isoform	chrom	strand	length	exons	structural_category	associated_gene	associated_transcript	ref_length	ref_exons	diff_to_TSS	diff_to_TTS	diff_to_gene_TSS	diff_to_gene_TTS	subcategory	RTS_stage	all_canonical	min_sample_cov	min_cov	min_cov_pos	sd_cov	FL	n_indels	n_indels_junc	bite	iso_exp	gene_exp	ratio_exp	FSM_class	coding	ORF_length	CDS_length	CDS_start	CDS_end	CDS_genomic_start	CDS_genomic_end	predicted_NMD	perc_A_downstream_TTS	seq_A_downstream_TTS	dist_to_cage_peak	within_cage_peak	pos_cage_peak	dist_to_polya_site	within_polya_site	polyA_motif	polyA_dist	ORF_seq	TSS_genomic_coord	TTS_genomic_coord	experiment_id	entry_id	LRGASP_id
transcript_10.known	ERCC-00024	+	519	1	FSM	ERCC-00024A	DQ854993	519	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00024_+_0_500
transcript_100004.known	chrX	-	2344	10	FSM	ENSMUSG00000036572.17	ENSMUST00000076265.13	2344	10	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_3	69.0213779729436	891	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCGTTTATTTATTCAAG	NA	False	NA	-1	True	AATAAA	-24	NA	36373975	36355330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_36356315_36359174_36359476_36360510_36360672_36363159_36363343_36363745_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373728
transcript_100005.known	chrX	-	2553	8	FSM	ENSMUSG00000036572.17	ENSMUST00000133481.2	2553	8	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	43.5576090496534	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAAAACAAAGTAACA	NA	False	NA	NA	False	NA	NA	NA	36373975	36361102	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_36362758_36363159_36363343_36363745_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373728
transcript_100007.known	chrX	+	4230	9	FSM	ENSMUSG00000016409.5	ENSMUST00000016553.5	4230	9	0	0	0	0	multi-exon	TRUE	canonical	3	360	junction_3	33.4381425171914	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTTTAATGTGTGGATT	NA	False	NA	24	True	AATAAA	-24	NA	36390447	36414399	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_36391029_36394630_36394712_36400164_36400236_36400404_36400546_36403329_36403394_36405290_36405401_36405489_36405566_36406557_36406708_36411443
transcript_100009.nic	chrX	+	970	5	ISM	ENSMUSG00000016409.5	ENSMUST00000016553.5	4230	9	-36	11010	-36	-2133	5prime_fragment	FALSE	canonical	3	360	junction_3	30.7520324531567	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGTCAGTTGTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	36390411	36403389	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_+_36391029_36394630_36394712_36400164_36400236_36400404_36400546_36403329
transcript_10001.known	chr10	+	1583	13	FSM	ENSMUSG00000025395.15	ENSMUST00000026461.8	1583	13	0	0	0	0	multi-exon	FALSE	canonical	2	393	junction_7	89.7794751970998	3856	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGTGCTCGGTTCTACCC	984	False	NA	18	True	TATAAA	-20	NA	127851040	127865906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_127851221_127851832_127851991_127853844_127853952_127854016_127854091_127855998_127856136_127857541_127857601_127858731_127858842_127859451_127859544_127859649_127859789_127862386_127862457_127862921_127863008_127865054_127865154_127865634
transcript_100010.nic	chrX	+	824	4	ISM	ENSMUSG00000016409.5	ENSMUST00000016553.5	4230	9	-36	13940	-36	-5063	5prime_fragment	FALSE	canonical	3	360	junction_3	31.947874212014	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAAAGAAAAAGTCATCTA	NA	False	NA	NA	False	AAGAAA	-39	NA	36390411	36400459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_+_36391029_36394630_36394712_36400164_36400236_36400404
transcript_100019.known	chrX	-	419	3	FSM	ENSMUSG00000016427.8	ENSMUST00000016571.8	419	3	0	0	0	0	multi-exon	FALSE	canonical	3	2951	junction_1	110	31452	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATTTTTATTTTTATGAA	2312	False	NA	-1	True	AATAAA	-20	NA	36454816	36451240	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_36451395_36453526_36453617_36454641
transcript_100020.known	chrX	+	1223	1	FSM	ENSMUSG00000036537.7	ENSMUST00000046433.7	1223	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	443	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTCTTTCTTTCTTTCT	NA	False	NA	21	True	AATAAA	-21	NA	36454897	36456120	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_36454900_36456100
transcript_100024.known	chrX	-	817	4	FSM	ENSMUSG00000073243.3	ENSMUST00000101636.3	817	4	0	0	0	0	multi-exon	TRUE	canonical	3	60	junction_3	3.74165738677394	365	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGCAAATTGAACAAATTTA	NA	False	NA	NA	False	ATTAAA	-12	NA	36474694	36473000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_36473184_36473576_36473674_36473912_36474226_36474470
transcript_100031.known	chrX	+	795	4	FSM	ENSMUSG00000051827.12	ENSMUST00000063340.12	795	4	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_3	56.8174464598878	713	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATACATTTGTTTTGTGC	NA	False	NA	NA	False	AATAAA	-12	NA	36508628	36513339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_36508740_36508901_36509314_36510828_36510875_36513113
transcript_100032.known	chrX	+	735	5	FSM	ENSMUSG00000051827.12	ENSMUST00000173650.2	735	5	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_3	65.4618209340376	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGACAGACGATGTTGTG	NA	False	NA	NA	False	NA	NA	NA	36508650	36513252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_36508740_36508901_36509314_36510828_36510875_36511141_36511191_36513113
transcript_100034.known	chrX	+	1053	6	FSM	ENSMUSG00000071772.14	ENSMUST00000115203.10	1053	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCCCATGTGCCTTTTGA	NA	False	NA	NA	False	AATATA	-2	NA	36513571	36522636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_36513634_36518187_36518337_36518521_36518712_36518961_36519332_36521207_36521254_36522400
transcript_100035.known	chrX	+	925	4	FSM	ENSMUSG00000079639.5	ENSMUST00000115194.5	925	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	1.24721912892465	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACTCATGTGTCTTTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	36528990	36533785	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_36529231_36529420_36529827_36532233_36532280_36533552
transcript_100036.known	chrX	+	828	4	FSM	ENSMUSG00000095601.9	ENSMUST00000096459.11	828	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAATTGTCCCATGTGCCT	NA	False	NA	NA	False	NA	NA	NA	36562040	36566141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_36562222_36562471_36562842_36564717_36564764_36565910
transcript_100037.known	chrX	+	901	4	FSM	ENSMUSG00000094945.4	ENSMUST00000179915.4	901	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	1.24721912892465	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGTGTCTTTTTGATTA	NA	False	NA	NA	False	AATAAA	-21	NA	36572500	36577274	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_36572713_36572902_36573309_36575718_36575765_36577037
transcript_100040.nnic	chrX	+	871	5	NNC	ENSMUSG00000079638.9	novel	799	4	NA	NA	-21	2	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	28.743477520996	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTTGTGCTTCTTC	NA	False	NA	NA	False	AATAAA	-18	NA	36593698	36598461	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_36593831_36593992_36594405_36595944_36595991_36596258_36596308_36598229
transcript_100041.nnic	chrX	+	774	5	NNC	ENSMUSG00000079638.9	novel	799	4	NA	NA	-21	-12	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	30.830180018936	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAATTCTCCATATATTTG	NA	False	NA	NA	False	AATAAA	-4	NA	36593698	36598447	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_36593831_36593992_36594405_36595944_36595991_36596258_36596308_36598312
transcript_100046.known	chrX	+	799	4	FSM	ENSMUSG00000079638.9	ENSMUST00000115191.7	799	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	23.6126143312331	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTTGTTTTGTGCTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	36593719	36598459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_36593831_36593992_36594405_36595944_36595991_36598229
transcript_100047.nnic	chrX	+	739	4	NNC	ENSMUSG00000079638.9	novel	799	4	NA	NA	-21	2	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_3	29.4392028877595	50	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTTGTGCTTCTTC	NA	False	NA	NA	False	AATAAA	-18	NA	36593698	36598461	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_36593831_36593992_36594405_36595944_36595991_36598312
transcript_100050.nic	chrX	+	986	3	NIC	ENSMUSG00000079638.9	novel	799	4	NA	NA	-25	0	intron_retention	FALSE	canonical	3	16	junction_2	18.5	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTTGTTTTGTGCTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	36593694	36598459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_36594405_36595944_36595991_36598229
transcript_100051.nnic	chrX	+	905	3	NNC	ENSMUSG00000079638.9	novel	799	4	NA	NA	-25	2	intron_retention	FALSE	canonical	1	3	junction_2	25	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTTGTGCTTCTTC	NA	False	NA	NA	False	AATAAA	-18	NA	36593694	36598461	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_36594405_36595944_36595991_36598312
transcript_100053.known	chrX	+	887	4	FSM	ENSMUSG00000071771.5	ENSMUST00000096458.5	887	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	7.87400787401181	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGTGTCTTTTTGATTA	9300	False	NA	NA	False	AATAAA	-21	NA	36614146	36618932	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_36614345_36614534_36614941_36617340_36617387_36618695
transcript_100058.known	chrX	+	720	5	FSM	ENSMUSG00000079637.11	ENSMUST00000184688.8	720	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	22.1585198061603	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGCCAGACGATGTTTTG	NA	False	NA	NA	False	NA	NA	NA	36635332	36639941	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_36635407_36635568_36635981_36637508_36637555_36637822_36637872_36639802
transcript_100062.known	chrX	+	762	4	FSM	ENSMUSG00000079637.11	ENSMUST00000115190.11	762	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	17.9133717900592	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTTGTTTTGTGCTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	36635332	36640032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_36635407_36635568_36635981_36637508_36637555_36639802
transcript_100063.nnic	chrX	+	738	4	NNC	ENSMUSG00000079637.11	novel	762	4	NA	NA	-59	0	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_3	20.3141986469235	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTTGTTTTGTGCTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	36635273	36640032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_36635407_36635568_36635981_36637508_36637555_36639885
transcript_100064.known	chrX	+	648	4	FSM	ENSMUSG00000079636.12	ENSMUST00000115189.10	648	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTCAGAAGTTCTCCTCC	NA	False	NA	NA	False	AATACA	-21	NA	36651520	36655432	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_36651702_36651951_36652322_36654190_36654237_36655381
transcript_100066.known	chrX	+	903	4	FSM	ENSMUSG00000079635.3	ENSMUST00000115183.2	903	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.24721912892465	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCATGTGTCTTTTTAATT	NA	False	NA	NA	False	AATAAA	-20	NA	36661989	36666777	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_36662205_36662397_36662804_36665222_36665269_36666541
transcript_100067.known	chrX	+	685	4	FSM	ENSMUSG00000095698.3	ENSMUST00000115179.4	685	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	8.9938250421547	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGACAGATGATGTTGTG	6889	False	NA	NA	False	NA	NA	NA	36675080	36679276	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_36675169_36675331_36675744_36677299_36677346_36679137
transcript_100068.nnic	chrX	+	777	3	NIC	ENSMUSG00000095698.3	novel	685	4	NA	NA	-45	93	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	8.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTTGTGCTTCTTC	6844	False	NA	NA	False	AATAAA	-18	NA	36675035	36679369	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_36675169_36675331_36675744_36679137
transcript_100069.nic	chrX	+	1352	3	NIC	ENSMUSG00000095698.3	novel	685	4	NA	NA	-413	91	intron_retention	FALSE	canonical	3	16	junction_1	10	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTTGTTTTGTGCTTCT	6476	False	NA	NA	False	AATAAA	-16	NA	36674667	36679367	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_36675744_36677299_36677346_36679137
transcript_100070.known	chrX	+	936	4	FSM	ENSMUSG00000079633.4	ENSMUST00000115175.4	936	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.4142135623731	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGTGTCTTTTTGATTA	NA	False	NA	NA	False	AATAAA	-21	NA	36696011	36700829	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_36696259_36696448_36696855_36699272_36699319_36700592
transcript_100073.known	chrX	+	735	5	FSM	ENSMUSG00000096788.9	ENSMUST00000184746.2	735	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	31.4523449046331	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGCCAGACGATGTTTTC	NA	False	NA	NA	False	NA	NA	NA	36712126	36723375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_36712216_36712377_36712790_36720942_36720989_36721255_36721305_36723236
transcript_100074.nnic	chrX	+	797	5	NNC	ENSMUSG00000096788.9	novel	735	5	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_3	31.4523449046331	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTTGTTTTGTGCTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	36712072	36723466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_36712216_36712377_36712790_36720942_36720989_36721255_36721305_36723319
transcript_100083.known	chrX	+	799	4	FSM	ENSMUSG00000096788.9	ENSMUST00000072167.10	799	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	24.1246761636296	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTTGTTTTGTGCTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	36712104	36723466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_36712216_36712377_36712790_36720942_36720989_36723236
transcript_100084.nnic	chrX	+	750	4	NNC	ENSMUSG00000096788.9	novel	799	4	NA	NA	-32	2	at_least_one_novel_splicesite	FALSE	canonical	1	16	junction_3	23.6690139681023	100	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTTGTGCTTCTTC	NA	False	NA	NA	False	AATAAA	-18	NA	36712072	36723468	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_36712216_36712377_36712790_36720942_36720989_36723319
transcript_100090.known	chrX	+	978	4	FSM	ENSMUSG00000071770.6	ENSMUST00000089075.6	978	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGTGTCTTTTTGATTA	NA	False	NA	NA	False	AATAAA	-21	NA	36739064	36743936	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_36739354_36739543_36739950_36742342_36742389_36743699
transcript_100095.known	chrX	+	799	4	FSM	ENSMUSG00000095741.4	ENSMUST00000115173.5	799	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	1.69967317119759	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTTGTTTTGTGCTTCT	9346	False	NA	NA	False	AATAAA	-16	NA	36753057	36757816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_36753169_36753330_36753743_36755287_36755334_36757586
transcript_100099.known	chrX	-	795	4	FSM	ENSMUSG00000079629.6	ENSMUST00000115169.4	795	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	7.03957069398096	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATATATTTGTTTTGTGC	NA	False	NA	NA	False	AATAAA	-12	NA	36825123	36820769	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_36820996_36822809_36822856_36824438_36824851_36825012
transcript_100101.nic	chrX	-	1177	3	NIC	ENSMUSG00000079629.6	novel	795	4	NA	NA	-426	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	7.5	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATATTTGTTTTGTGCTT	NA	False	NA	NA	False	AATAAA	-14	NA	36825549	36820767	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_36820996_36824438_36824851_36825012
transcript_100103.known	chrX	-	979	4	FSM	ENSMUSG00000079628.4	ENSMUST00000115166.3	979	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	1.24721912892465	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGTGTCTTTTTGATTA	6368	False	NA	NA	False	AATAAA	-21	NA	36832980	36828152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_36828390_36829677_36829724_36832090_36832497_36832690
transcript_100104.nnic	chrX	-	967	3	NIC	ENSMUSG00000079628.4	novel	979	4	NA	NA	-40	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	10	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGACTCATGTGTCTTTT	6328	False	NA	NA	False	AATAAA	-15	NA	36833020	36828158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_36828390_36832090_36832497_36832690
transcript_100106.known	chrX	-	779	4	FSM	ENSMUSG00000079627.3	ENSMUST00000115162.2	779	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	11.2644968324772	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATACATTTGTTTTGTGC	9229	False	NA	NA	False	AATAAA	-12	NA	36854930	36850649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_36850876_36852672_36852719_36854261_36854674_36854835
transcript_100107.nnic	chrX	-	403	3	NIC	ENSMUSG00000079627.3	novel	779	4	NA	NA	-36	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_2	14.5	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATACATTTGTTTTGTGC	9193	False	NA	NA	False	AATAAA	-12	NA	36854966	36850649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_36850876_36852672_36852719_36854835
transcript_100108.nnic	chrX	-	871	5	Fusion	ENSMUSG00000106388.2_ENSMUSG00000081195.3	novel	322	3	NA	NA	-109	102	multi-exon	FALSE	canonical	0	0	junction_3	6.16441400296898	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGCCTCAGGTGTCTTC	NA	False	NA	NA	False	AATAAA	-15	NA	36865193	36857920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chrX_-_36858142_36859175_36859222_36861051_36861185_36864533_36864794_36864982
transcript_100109.nnic	chrX	-	868	5	Fusion	ENSMUSG00000106388.2_ENSMUSG00000081195.3	novel	322	3	NA	NA	-108	102	multi-exon	FALSE	canonical	0	0	junction_3	5.53962995154008	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGCCTCAGGTGTCTTC	NA	False	NA	NA	False	AATAAA	-15	NA	36865192	36857920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chrX_-_36858142_36859175_36859222_36861051_36861185_36864533_36864809_36864999
transcript_100121.known	chrX	+	957	6	FSM	ENSMUSG00000095180.11	ENSMUST00000179626.3	957	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1594.13919091151	8196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTTAGTGATTCGAGTAA	8630	False	NA	17	True	ATTAAA	-14	NA	36891760	36897308	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_36891896_36892583_36892653_36893274_36893357_36893532_36893891_36894500_36894547_36897041
transcript_100123.known	chrX	+	868	6	FSM	ENSMUSG00000095180.11	ENSMUST00000239523.1	868	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	1588.16578479704	6484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAGTGATTCGAGTAATAT	9192	False	NA	20	True	ATTAAA	-17	NA	36892322	36897311	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_36892366_36892583_36892653_36893274_36893357_36893532_36893891_36894500_36894547_36897041
transcript_100130.known	chrX	+	893	6	FSM	ENSMUSG00000095180.11	ENSMUST00000184866.10	893	6	0	0	0	0	multi-exon	FALSE	canonical	3	2792	junction_1	493.533626007388	46023	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTTAGTGATTCGAGTAA	8505	False	NA	17	True	ATTAAA	-14	NA	36891635	36897308	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_36891707_36892583_36892653_36893274_36893357_36893532_36893891_36894500_36894547_36897041
transcript_100133.known	chrX	+	1010	4	FSM	ENSMUSG00000006200.4	ENSMUST00000006362.4	1010	4	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_1	47.588514020367	2098	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGCTCCATTGTCTTGG	NA	False	NA	14	True	AATAAA	-18	NA	36915786	36918734	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_36916057_36916242_36916703_36917291_36917338_36918500
transcript_100138.known	chrX	+	409	3	FSM	ENSMUSG00000071767.5	ENSMUST00000184891.2	409	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCCTCAGGTGTCTTCTG	NA	False	NA	NA	False	AATAAA	-17	NA	36926728	36930152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_36926871_36928868_36928915_36929931
transcript_100140.nnic	chrX	-	927	5	NNC	ENSMUSG00000079626.3	novel	1091	8	NA	NA	6120	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	4.27200187265877	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCAGGTGTCTTCTGGATT	9704	False	NA	NA	False	AATAAA	-21	NA	36979989	36975315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_36975541_36976568_36976615_36978426_36978865_36979613_36979644_36979801
transcript_100141.nnic	chrX	-	552	4	NNC	ENSMUSG00000079626.3	novel	1091	8	NA	NA	6140	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	4.64279609239471	18	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCAGGTGTCTTCTGGATT	9724	False	NA	NA	False	AATAAA	-21	NA	36979969	36975315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_36975541_36976568_36976615_36978426_36978540_36979801
transcript_100144.nnic	chrX	-	1676	4	NNC	ENSMUSG00000079626.3	novel	1091	8	NA	NA	6120	0	intron_retention	FALSE	canonical	2	3	junction_3	3.29983164553722	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCAGGTGTCTTCTGGATT	9704	False	NA	NA	False	AATAAA	-21	NA	36979989	36975315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_36975541_36976568_36976615_36978426_36979644_36979801
transcript_100145.nnic	chrX	-	760	4	NNC	ENSMUSG00000068048.9	novel	882	4	NA	NA	138	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	24.7790233867277	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTGGCTCCATTATCTT	1282	False	NA	-1	True	AATAAA	-16	NA	36990443	36987973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_36988177_36989156_36989203_36989828_36990289_36990392
transcript_100146.known	chrX	-	882	4	FSM	ENSMUSG00000068048.9	ENSMUST00000089062.8	882	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	21.013223349966	578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTGGCTCCATTATCTT	1078	False	NA	-1	True	AATAAA	-16	NA	36990647	36987973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_36988177_36989156_36989203_36989828_36990289_36990474
transcript_100147.nnic	chrX	-	827	4	NNC	ENSMUSG00000081133.3	novel	451	3	NA	NA	-102	208	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	4.32049379893857	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCTTCAATTGCCCTC	NA	False	NA	NA	False	AATAAA	-14	NA	37034581	37029484	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_37029729_37030445_37030512_37031396_37031443_37034110
transcript_100150.known	chrX	-	451	3	FSM	ENSMUSG00000081133.3	ENSMUST00000117962.3	451	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCAGAAGGCAGCACCGTG	NA	False	NA	NA	False	NA	NA	NA	37034479	37029692	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_37029729_37031396_37031443_37034110
transcript_100152.known	chrX	+	763	3	FSM	ENSMUSG00000053909.9	ENSMUST00000115150.4	763	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	1	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTGTTTGTGTTTGTCA	NA	False	NA	NA	False	AATAAA	-18	NA	37155351	37160568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_37155824_37158275_37158322_37160323
transcript_100153.known	chrX	+	876	3	FSM	ENSMUSG00000050197.6	ENSMUST00000152730.4	876	3	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	2	818	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTTTAATTTTATGTGC	NA	False	NA	2	True	AATAAA	-15	NA	37210095	37218844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_37210700_37211950_37211997_37218618
transcript_100157.nnic	chrX	+	580	4	NNC	ENSMUSG00000084009.2	novel	806	6	NA	NA	3413	102	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	5.09901951359278	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGCCCCATGTGTCTTC	NA	False	NA	NA	False	AATAAA	-15	NA	37389157	37395007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_37389322_37390586_37390738_37391584_37391631_37394788
transcript_100161.known	chrX	-	1769	9	FSM	ENSMUSG00000016534.16	ENSMUST00000016678.14	1769	9	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	278.250982702667	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTGTTTCAATTTGTAA	NA	False	NA	-1	True	AATAAA	-18	NA	37545331	37493938	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_37494449_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
transcript_100162.known	chrX	-	3604	9	FSM	ENSMUSG00000016534.16	ENSMUST00000061755.9	3604	9	0	0	0	0	multi-exon	FALSE	canonical	3	893	junction_3	45.9604109533411	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAATTTGCTCACATTTTT	NA	False	NA	-22	True	AATAAA	-19	NA	37545331	37508383	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_37510729_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
transcript_100164.known	chrX	-	2184	9	FSM	ENSMUSG00000016534.16	ENSMUST00000074913.12	2184	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	322.044615503815	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAATACTGTTCGTGTTTTT	NA	False	NA	NA	False	ATTAAA	-26	NA	37545331	37490233	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_37491159_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
transcript_100165.known	chrX	-	3090	23	FSM	ENSMUSG00000031095.16	ENSMUST00000050083.6	3090	23	0	0	0	0	multi-exon	FALSE	non_canonical	3	112	junction_22	288.723912992818	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCATGTTATTTGACTTCT	NA	False	NA	-5	True	GATAAA	-14	NA	37665060	37622450	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653809_37653984_37661280_37661356_37664956
transcript_100175.nic	chrX	-	846	2	ISM	ENSMUSG00000031095.16	ENSMUST00000050083.6	3090	23	-53	38216	-40	-38216	5prime_fragment	FALSE	canonical	3	112	junction_1	0	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCCTCAGCATGCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	37665113	37660666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_37661356_37664956
transcript_100176.known	chrX	-	3344	23	FSM	ENSMUSG00000031095.16	ENSMUST00000115118.8	3344	23	0	0	0	0	multi-exon	FALSE	non_canonical	3	600	junction_22	211.248653964121	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGTCATTTAAAGATACT	NA	False	NA	-28	True	AATAAA	-20	NA	37665073	37622150	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653809_37653984_37661280_37661356_37665015
transcript_100195.nic	chrX	+	831	5	NIC	ENSMUSG00000000355.14	novel	783	6	NA	NA	-124	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_1	253.564094461341	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGTTAGTTTCAGAAAT	NA	False	NA	17	True	AATAAA	-19	NA	37689330	37702303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_37689656_37691452_37691551_37694815_37694950_37700642_37700711_37702097
transcript_100196.nic	chrX	+	929	5	NIC	ENSMUSG00000000355.14	novel	783	6	NA	NA	-124	98	combination_of_known_junctions	FALSE	canonical	3	42	junction_1	253.564094461341	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATGACTCAATGTCCTAT	NA	False	NA	10	True	ATTAAA	-23	NA	37689330	37702401	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_37689656_37691452_37691551_37694815_37694950_37700642_37700711_37702097
transcript_10020.known	chr10	+	885	8	FSM	ENSMUSG00000061315.15	ENSMUST00000073868.9	885	8	0	0	0	0	multi-exon	FALSE	canonical	3	9741	junction_1	845.476607528293	111227	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGCAGGTGCTAGATCTT	4912	False	NA	0	True	AATAAA	-24	NA	127871443	127884502	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883867_127883997_127884113_127884237_127884361
transcript_100203.known	chrX	+	783	6	FSM	ENSMUSG00000000355.14	ENSMUST00000000365.3	783	6	0	0	0	0	multi-exon	FALSE	canonical	3	489	junction_1	58.4486099064811	1454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGTTAGTTTCAGAAAT	NA	False	NA	17	True	AATAAA	-19	NA	37689531	37702303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_37689656_37690805_37690959_37691452_37691551_37694815_37694950_37700642_37700711_37702097
transcript_100204.known	chrX	+	501	4	FSM	ENSMUSG00000000355.14	ENSMUST00000140204.8	501	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	273.57062870288	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTTTCACTTTAGGCTC	NA	False	NA	NA	False	NA	NA	NA	37689454	37700710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_37689656_37691452_37691551_37694815_37694950_37700642
transcript_100205.known	chrX	-	1449	2	FSM	ENSMUSG00000048970.10	ENSMUST00000058265.8	1449	2	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	0	324	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCTATTACTTTTCTGT	NA	False	NA	-2	True	ATTAAA	-18	NA	37723964	37719661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_37721001_37723854
transcript_100206.nic	chrX	-	3886	31	ISM	ENSMUSG00000037475.16	ENSMUST00000047037.15	7622	39	-36	19603	-36	0	5prime_fragment	FALSE	canonical	3	149	junction_12	22.2343328111179	100	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAGAGAAAGAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	41000814	40903470	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_40903506_40911244_40911348_40911569_40911749_40912238_40912424_40912510_40912643_40912966_40913096_40914312_40914471_40914896_40915039_40916059_40916336_40919569_40919735_40922185_40922366_40923974_40924093_40925377_40925475_40926991_40927073_40927460_40927555_40928426_40928512_40932903_40933006_40933101_40933233_40933640_40933683_40945610_40945807_40946940_40947114_40947675_40947832_40949001_40949095_40952905_40953073_40961166_40961301_40961441_40961564_40962758_40962830_40968762_40968815_40970785_40970878_40986668_40986728_41000677
transcript_100208.nic	chrX	-	2823	23	ISM	ENSMUSG00000037475.16	ENSMUST00000047037.15	7622	39	-36	32192	-36	-3775	5prime_fragment	FALSE	canonical	3	149	junction_4	23.7647300993345	113	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTTTGATGTAGCGAT	NA	False	NA	NA	False	AATAAA	-43	NA	41000814	40916059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_40916336_40919569_40919735_40922185_40922366_40923974_40924093_40925377_40925475_40926991_40927073_40927460_40927555_40928426_40928512_40932903_40933006_40933101_40933233_40933640_40933683_40945610_40945807_40946940_40947114_40947675_40947832_40949001_40949095_40952905_40953073_40961166_40961301_40961441_40961564_40962758_40962830_40968762_40968815_40970785_40970878_40986668_40986728_41000677
transcript_10021.known	chr10	+	2000	8	FSM	ENSMUSG00000071072.13	ENSMUST00000052798.14	2000	8	0	0	0	0	multi-exon	FALSE	canonical	3	2953	junction_7	394.34461257812	3767	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCAGTGTCACCTTGTTT	846	False	NA	39	True	AATAAA	-40	NA	127894822	127913141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_127895156_127904540_127904655_127905084_127905155_127906002_127906102_127907936_127908027_127910090_127910154_127911206_127911232_127911935
transcript_100214.nic	chrX	-	549	7	ISM	ENSMUSG00000037475.16	ENSMUST00000127338.8	2697	11	-36	15821	-36	1515	5prime_fragment	FALSE	canonical	3	197	junction_5	10.8115164934846	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCAATTTATTAAGAGAAGA	NA	False	NA	NA	False	NA	NA	NA	41000814	40961284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_40961301_40961441_40961564_40962758_40962830_40968762_40968815_40970785_40970878_40986668_40986728_41000677
transcript_100219.nic	chrX	-	1051	2	ISM	ENSMUSG00000037475.16	ENSMUST00000129915.8	869	9	-51	36812	-36	-17051	5prime_fragment	FALSE	canonical	3	228	junction_1	0	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	41000814	40985813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_40986728_41000677
transcript_10022.known	chr10	+	1559	7	FSM	ENSMUSG00000071072.13	ENSMUST00000084771.3	1559	7	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_4	1337.80347543609	669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTTGGAAGATTTCTTGG	903	False	NA	-1	True	TTTAAA	-22	NA	127894879	127912847	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_127895156_127904540_127904655_127905084_127905155_127906002_127906102_127910090_127910154_127911206_127911232_127911935
transcript_100220.known	chrX	+	6542	8	FSM	ENSMUSG00000025860.16	ENSMUST00000115094.8	6542	8	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	28.7345344383332	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTTATCTTCTTTGTAT	NA	False	NA	18	True	AATAAA	-14	NA	41156712	41198533	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_41156934_41157233_41157360_41183243_41184150_41185489_41185590_41187680_41187760_41188713_41188757_41190872_41191074_41193667
transcript_100221.known	chrX	+	5407	6	FSM	ENSMUSG00000025860.16	ENSMUST00000145065.2	5407	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	43.8880393729317	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTTATCTTCTTTGTAT	NA	False	NA	18	True	AATAAA	-14	NA	41157631	41198533	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_41157750_41185489_41185590_41187680_41187760_41188713_41188757_41190872_41191074_41193667
transcript_100226.nic	chrX	+	755	2	ISM	ENSMUSG00000025860.16	ENSMUST00000126375.2	487	3	-28	25649	17	501	5prime_fragment	FALSE	canonical	3	44	junction_1	0	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTGATCAACCTCCCTGC	NA	False	NA	NA	False	ATTAAA	-12	NA	41156729	41157784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_+_41156934_41157233
transcript_100227.known	chrX	+	500	3	FSM	ENSMUSG00000025860.16	ENSMUST00000146874.3	500	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGAGGCTCAGAGTCTTC	NA	False	NA	NA	False	AATAAA	-21	NA	41157286	41161515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_41157360_41160118_41160381_41161350
transcript_100229.known	chrX	+	5825	33	FSM	ENSMUSG00000025862.15	ENSMUST00000069619.14	5825	33	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	27.0432957264827	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTTATCTCTTGTAATC	NA	False	NA	19	True	AATAAA	-22	NA	41239577	41366062	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_41239712_41290731_41290872_41294922_41295002_41299954_41300120_41306211_41306309_41309854_41309932_41312122_41312328_41313804_41313957_41315665_41315740_41317087_41317212_41318000_41318100_41318195_41318276_41322747_41322856_41323522_41323635_41325165_41325284_41325827_41325932_41335842_41335936_41336055_41336146_41336726_41336931_41338881_41338953_41339208_41339297_41339397_41339479_41341930_41342024_41342553_41342729_41345731_41345872_41346902_41347005_41348231_41348381_41349480_41349610_41351535_41351760_41354962_41355153_41358257_41358385_41360121_41360200_41364139
transcript_100233.known	chrX	+	6171	34	FSM	ENSMUSG00000025862.15	ENSMUST00000115073.9	6171	34	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	38.2930798352529	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTTATCTCTTGTAATC	NA	False	NA	19	True	AATAAA	-22	NA	41238193	41366062	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_41238563_41290731_41290872_41294922_41295002_41299954_41300120_41306211_41306309_41309854_41309932_41312122_41312328_41313804_41313957_41315665_41315740_41317087_41317212_41318000_41318100_41318195_41318276_41322747_41322856_41323522_41323635_41325165_41325284_41325827_41325932_41335842_41335936_41336055_41336146_41336726_41336931_41338881_41338953_41339208_41339297_41339397_41339479_41341930_41342024_41342553_41342729_41345731_41345872_41346902_41347005_41348231_41348381_41349480_41349610_41351535_41351760_41354962_41355153_41355242_41355354_41358257_41358385_41360121_41360200_41364139
transcript_100235.known	chrX	-	3509	2	FSM	ENSMUSG00000045284.10	ENSMUST00000060481.9	3509	2	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACCTCTGTTTTTCTTTA	NA	False	NA	-5	True	AATAAA	-40	NA	43879074	43875446	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_43877171_43877289
transcript_100236.known	chrX	-	3495	2	FSM	ENSMUSG00000045284.10	ENSMUST00000115056.2	3495	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACCTCTGTTTTTCTTTA	NA	False	NA	-5	True	AATAAA	-40	NA	43879038	43875446	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_43877171_43877267
transcript_100238.known	chrX	-	408	1	FSM	ENSMUSG00000063816.4	ENSMUST00000078326.4	408	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTTGTGTGCATATTTT	NA	False	NA	NA	False	AAGAAA	-9	NA	45545171	45544763	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_45544800_45545200
transcript_100239.known	chrX	-	4798	23	FSM	ENSMUSG00000031099.17	ENSMUST00000088973.11	4798	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_21	6.17462817162712	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCTCACTTCTTTGTTGC	NA	False	NA	NA	False	ATTAAA	-19	NA	46981429	46898509	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_46900146_46912241_46912455_46912566_46912686_46915369_46915503_46917735_46917859_46930413_46930528_46930785_46930897_46938792_46938913_46940521_46940671_46941471_46941605_46943442_46943596_46947132_46947255_46949297_46949525_46950155_46950266_46963031_46963101_46964040_46964173_46965261_46965418_46968322_46968503_46972224_46972326_46972452_46972554_46972913_46973081_46975973_46976076_46981102
transcript_100240.known	chrX	+	483	1	FSM	ENSMUSG00000068014.6	ENSMUST00000119328.2	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	810	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTACACAAAGAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	46989221	46989704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_46989200_46989700
transcript_100241.known	chrX	+	5253	24	FSM	ENSMUSG00000001173.16	ENSMUST00000001202.15	5253	24	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	28.8803018275155	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATTGTGATCTGACTGAG	NA	False	NA	17	True	AATAAA	-18	NA	47001263	47054745	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_47001569_47001845_47001926_47005351_47005432_47009037_47009077_47019247_47019359_47019774_47019862_47020452_47020574_47020660_47020823_47022250_47022353_47023721_47023837_47024966_47025084_47025177_47025366_47027175_47027288_47029985_47030096_47032382_47032519_47035879_47035991_47036583_47036750_47037001_47037238_47045086_47045111_47049329_47049447_47050253_47050339_47050956_47051085_47052017_47052130_47052336
transcript_100246.known	chrX	+	3498	21	FSM	ENSMUSG00000037005.17	ENSMUST00000077775.11	3498	21	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_11	7.3109506905737	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCCTGCCTCTGGTTTTGC	NA	False	NA	NA	False	AAAACA	-12	NA	47197601	47225858	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_47198072_47200601_47200676_47202553_47202665_47204804_47204869_47205828_47205934_47206154_47206242_47207211_47207359_47210677_47210780_47211405_47211488_47211764_47211961_47212715_47212806_47213492_47213603_47214221_47214300_47215745_47215818_47217601_47217663_47218923_47218994_47219555_47219661_47220024_47220085_47220774_47220852_47223961_47224052_47224611
transcript_100247.nnic	chrX	+	1283	8	NNC	ENSMUSG00000037005.17	novel	3017	20	NA	NA	-67	6674	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	17.1618941916357	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTGTGTCTGGATGTTT	NA	False	NA	NA	False	AAAAAG	-17	NA	47197534	47207705	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_47198072_47200601_47200676_47202553_47202665_47204804_47204869_47205828_47205934_47206154_47206242_47207211_47207359_47207547
transcript_100248.nic	chrX	+	1254	7	ISM	ENSMUSG00000037005.17	ENSMUST00000114998.8	3017	20	-261	15415	-67	6456	5prime_fragment	TRUE	canonical	3	34	junction_5	7.51480021173033	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGAGATGCTTGGTTAAAA	NA	False	NA	NA	False	NA	NA	NA	47197534	47207487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_+_47198072_47200601_47200676_47202553_47202665_47204804_47204869_47205828_47205934_47206154_47206242_47207211
transcript_100249.known	chrX	+	2677	8	FSM	ENSMUSG00000031101.7	ENSMUST00000033427.7	2677	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	1.30930734141595	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACCGTCGCCTGTTTTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	47235312	47250442	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_47235595_47243402_47243499_47243852_47244000_47246295_47246438_47247609_47247759_47247918_47248129_47248280_47248432_47248942
transcript_100251.known	chrX	-	2982	10	FSM	ENSMUSG00000036985.13	ENSMUST00000037960.11	2982	10	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_4	12.3107902084129	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGCCTGCCTCCTCCTTCC	NA	False	NA	-2	True	ATTAAA	-16	NA	47297564	47260845	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_47262519_47266916_47267014_47267385_47267490_47270123_47270227_47270975_47271025_47271897_47272036_47280097_47280257_47283436_47283598_47295544_47295835_47297356
transcript_100252.known	chrX	-	1388	6	FSM	ENSMUSG00000036985.13	ENSMUST00000123054.8	1388	6	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	9.45304183847718	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGATGTTTTTCATTTATA	NA	False	NA	NA	False	GATAAA	-21	NA	47297542	47270570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_47271025_47271897_47272036_47280097_47280257_47283436_47283598_47295544_47295835_47297356
transcript_100254.known	chrX	+	2507	15	FSM	ENSMUSG00000063785.13	ENSMUST00000080713.5	2507	15	0	0	0	0	multi-exon	FALSE	canonical	3	320	junction_8	49.1840047833705	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGACTACCTTCTGTATTA	NA	False	NA	20	True	AATAAA	-24	NA	47345738	47371330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361676_47361797_47361898_47361994_47362566_47362691_47362775_47362854_47363677_47364066_47366098_47366497_47367243_47367438_47367544_47367645_47370938
transcript_100270.nnic	chrX	+	1485	10	NIC	ENSMUSG00000063785.13	novel	2507	15	NA	NA	-61	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_7	130.820015835536	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGACTACCTTCTGTATTA	NA	False	NA	20	True	AATAAA	-24	NA	47345677	47371330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361676_47361797_47367243_47367438_47367544_47367645_47370938
transcript_100272.nic	chrX	+	998	9	ISM	ENSMUSG00000063785.13	ENSMUST00000080713.5	2507	15	-61	8660	-61	709	5prime_fragment	FALSE	canonical	3	320	junction_8	33.9484903935359	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAAAAAGCCAGAATGATG	NA	False	NA	NA	False	NA	NA	NA	47345677	47362670	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361676_47361797_47361898_47361994_47362566
transcript_100275.known	chrX	+	2138	7	FSM	ENSMUSG00000063785.13	ENSMUST00000125966.8	2138	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_6	135.426999605774	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGATTTGAGTTCTGTTTT	NA	False	NA	NA	False	GATAAA	-41	NA	47345773	47356846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47355291
transcript_100276.nic	chrX	+	798	6	ISM	ENSMUSG00000063785.13	ENSMUST00000125966.8	2138	7	-96	4218	-61	-4218	5prime_fragment	FALSE	canonical	3	345	junction_4	29.36256119619	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACTATATTCTAATTGTC	NA	False	NA	NA	False	AAAAAG	-9	NA	47345677	47352628	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353
transcript_100280.known	chrX	-	2221	16	FSM	ENSMUSG00000036932.15	ENSMUST00000114945.9	2221	16	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_15	394.039704711199	699	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTTGTTTTATTTTAA	NA	False	NA	-1	True	ATTAAA	-16	NA	47602436	47563820	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47592459_47592591_47602112
transcript_100284.known	chrX	-	2237	16	FSM	ENSMUSG00000036932.15	ENSMUST00000037349.8	2237	16	0	0	0	0	multi-exon	FALSE	canonical	3	1039	junction_9	82.1482129378898	2299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTTGTTTTATTTTAA	NA	False	NA	-1	True	ATTAAA	-16	NA	47602440	47563820	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47593686_47593830_47602112
transcript_100285.known	chrX	+	1158	2	FSM	ENSMUSG00000031104.3	ENSMUST00000033430.3	1158	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCACGTGGCTTTGTGTCTT	NA	False	NA	6	True	AATAAA	-14	NA	47608161	47619109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_47608736_47618525
transcript_100286.known	chrX	-	4045	20	FSM	ENSMUSG00000036916.14	ENSMUST00000072292.12	4045	20	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_17	15.8598431908636	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATTGCATCATCTAATACG	NA	False	NA	44	True	AATAAA	-22	NA	47683329	47630501	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_47632167_47632281_47632319_47632461_47632581_47636141_47636205_47637434_47637573_47638928_47639237_47642854_47642987_47647145_47647293_47647919_47648021_47648543_47648702_47652558_47652780_47655584_47655695_47655825_47655991_47657997_47658104_47661158_47661293_47661622_47661689_47667256_47667407_47677579_47677627_47680549_47680639_47683240
transcript_100293.nnic	chrX	+	1476	12	NIC	ENSMUSG00000031105.17	novel	1862	13	NA	NA	-30	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	47.4155186089816	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTTGACTTTGTCTTCA	NA	False	NA	14	True	ATTAAA	-17	NA	47712595	47751171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_47712706_47714472_47714518_47717012_47717061_47718128_47718223_47719765_47719914_47723633_47723729_47726266_47726353_47729111_47729208_47740806_47740932_47742243_47742380_47749565_47749647_47750759
transcript_100294.nic	chrX	+	1508	11	NIC	ENSMUSG00000031105.17	novel	1760	11	NA	NA	16	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	33.2180673730426	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTTGACTTTGTCTTCA	NA	False	NA	14	True	ATTAAA	-17	NA	47712305	47751171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_47712386_47712550_47712706_47718128_47718223_47719765_47719914_47723633_47723729_47726266_47726353_47729111_47729208_47740806_47740932_47742243_47742380_47749565_47749647_47750759
transcript_100297.known	chrX	+	1760	11	FSM	ENSMUSG00000031105.17	ENSMUST00000033431.14	1760	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	43.9708994677161	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTTGACTTTGTCTTCA	NA	False	NA	14	True	ATTAAA	-17	NA	47712454	47751171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_47712706_47712838_47713075_47718128_47718223_47719765_47719914_47723633_47723729_47726266_47726353_47729111_47729208_47740806_47740932_47742243_47742380_47749565_47749647_47750759
transcript_100298.known	chrX	+	724	7	FSM	ENSMUSG00000031105.17	ENSMUST00000153047.8	724	7	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_3	17.5665401639974	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGAATTATGTTTGAT	NA	False	NA	NA	False	NA	NA	NA	47712625	47740931	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_47712706_47718128_47718223_47719765_47719914_47723633_47723729_47726266_47726353_47729111_47729208_47740806
transcript_100299.known	chrX	+	1582	11	FSM	ENSMUSG00000031105.17	ENSMUST00000114936.8	1582	11	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	43.3798340245787	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTTGACTTTGTCTTCA	NA	False	NA	14	True	ATTAAA	-17	NA	47712641	47751171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_47712706_47712838_47713084_47718128_47718223_47719765_47719914_47723633_47723729_47726266_47726353_47729111_47729208_47740806_47740932_47742243_47742380_47749565_47749647_47750759
transcript_100300.known	chrX	+	1747	6	FSM	ENSMUSG00000031107.7	ENSMUST00000033433.3	1747	6	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_1	50.9768574943572	1377	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGGCATTTGGTCCACTCA	NA	False	NA	NA	False	NA	NA	NA	47783880	47799600	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_47783998_47784196_47784313_47786277_47786330_47795181_47795312_47797766_47797951_47798452
transcript_100304.nic	chrX	-	606	3	ISM	ENSMUSG00000079606.2	ENSMUST00000114928.2	2122	21	-79	34711	-79	-34711	5prime_fragment	FALSE	canonical	3	6	junction_2	1.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCTAAGCACTTTCTAAGA	NA	False	NA	NA	False	AATAAA	-43	NA	47966669	47965053	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_47965258_47965864_47965991_47966393
transcript_100305.known	chrX	-	2122	21	FSM	ENSMUSG00000079606.2	ENSMUST00000114928.2	2122	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	2.37697286480094	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAACCTCTATTCCTG	NA	False	NA	NA	False	ATTAAA	-10	NA	47966590	47930342	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_47930518_47931665_47931712_47933207_47933309_47933523_47933596_47934354_47934427_47935111_47935184_47942295_47942368_47943118_47943191_47943943_47944019_47944848_47944921_47945500_47945573_47946351_47946418_47947147_47947217_47961723_47961842_47962307_47962419_47963043_47963186_47964080_47964221_47964535_47964626_47965095_47965258_47965864_47965991_47966393
transcript_100307.known	chrX	-	3226	16	FSM	ENSMUSG00000031109.17	ENSMUST00000114918.9	3226	16	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_4	10.7695042700313	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGACAGGGACTCCTCTGG	NA	False	NA	45	True	NA	NA	NA	48377119	48099334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_48100512_48102009_48102058_48102373_48102460_48107659_48107772_48111970_48112079_48114039_48114222_48129392_48129508_48140608_48140716_48142585_48142799_48145211_48145446_48151019_48151227_48158511_48158668_48169493_48169629_48257517_48257662_48375721_48375782_48376977
transcript_100310.known	chrX	-	3167	15	FSM	ENSMUSG00000031109.17	ENSMUST00000114912.8	3167	15	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_13	14.647560220329	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGACAGGGACTCCTCTGG	NA	False	NA	45	True	NA	NA	NA	48377119	48099334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_48100512_48102373_48102460_48107659_48107772_48111970_48112079_48114039_48114222_48129392_48129508_48140608_48140716_48142585_48142799_48145211_48145446_48151019_48151227_48158511_48158668_48169493_48169629_48257517_48257662_48375732_48375782_48376977
transcript_100317.known	chrX	-	968	6	FSM	ENSMUSG00000031109.17	ENSMUST00000137518.8	968	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	20.1395134002786	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACCAACTGAGTGTTTT	NA	False	NA	NA	False	AATAAA	-35	NA	48377089	48154316	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_48154678_48158511_48158668_48169493_48169629_48257517_48257662_48375721_48375782_48376977
transcript_100320.nic	chrX	-	364	3	ISM	ENSMUSG00000031109.17	ENSMUST00000137518.8	968	6	-68	103221	-21	-98906	5prime_fragment	FALSE	canonical	3	33	junction_1	11	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAACAAATCCTCCTTCAG	NA	False	NA	NA	False	AAGAAA	-6	NA	48377157	48257537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_48257662_48375721_48375782_48376977
transcript_100322.known	chrX	-	1761	5	FSM	ENSMUSG00000031111.17	ENSMUST00000114891.2	1761	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	1.08972473588517	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATATAGCTTTTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	48886626	48881842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_48883069_48883368_48883651_48883999_48884027_48884155_48884285_48886529
transcript_100328.nic	chrX	-	3223	2	ISM	ENSMUSG00000085396.8	ENSMUST00000148530.3	716	6	-8	12629	0	-12629	5prime_fragment	FALSE	canonical	3	63	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAGAAAAAACCCGGTACCA	NA	False	NA	NA	False	AATAGA	-39	NA	49724188	49717016	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_49719873_49723821
transcript_100329.known	chrX	+	3639	12	FSM	ENSMUSG00000031112.11	ENSMUST00000033444.11	3639	12	0	0	0	0	multi-exon	TRUE	canonical	3	20	junction_11	5.29618605950164	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATCCTCGATGTTTGTTT	NA	False	NA	NA	False	AATAAA	-13	NA	49929923	49981974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_49930424_49930555_49930713_49959132_49959364_49968365_49968423_49974465_49974575_49974663_49974822_49975527_49975714_49976737_49976887_49977892_49977987_49978565_49978629_49978709_49978847_49980176
transcript_100332.known	chrX	-	2243	8	FSM	ENSMUSG00000036109.18	ENSMUST00000114876.9	2243	8	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_7	7.54848275064166	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGAGAGTAGCCATTACATT	NA	False	NA	NA	False	AATAAA	-24	NA	50294867	50208956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_50209896_50212693_50212789_50217797_50217949_50218981_50219219_50220305_50220498_50228080_50228246_50253294_50253542_50294650
transcript_100337.known	chrX	-	1803	7	FSM	ENSMUSG00000036109.18	ENSMUST00000041495.14	1803	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	9.88966913276453	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGAGAGTAGCCATTACATT	NA	False	NA	NA	False	AATAAA	-24	NA	50235292	50208956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_50209896_50212693_50212789_50217797_50217949_50218981_50219219_50220305_50220498_50228080_50228246_50235268
transcript_100340.known	chrX	-	4649	7	FSM	ENSMUSG00000036109.18	ENSMUST00000114875.8	4649	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	9.88966913276453	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	50294709	50206145	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_50209896_50212693_50212789_50217797_50217949_50218981_50219219_50220305_50220498_50228080_50228246_50294650
transcript_100347.known	chrX	-	3800	2	FSM	ENSMUSG00000062184.12	ENSMUST00000142738.2	3800	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAATTCGAAGTT	NA	False	NA	NA	False	NA	NA	NA	50770225	50765659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_50769286_50770051
transcript_100348.known	chrX	-	4120	8	FSM	ENSMUSG00000055780.11	ENSMUST00000069509.4	4120	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	4.17475405605784	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTGTATTAACTGGACAGA	NA	False	NA	NA	False	NA	NA	NA	50890021	50842835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_50846351_50854031_50854113_50882224_50882281_50885803_50885850_50886599_50886704_50887371_50887431_50889689_50889806_50889878
transcript_10035.known	chr10	+	1916	10	FSM	ENSMUSG00000025393.13	ENSMUST00000026459.6	1916	10	0	0	0	0	multi-exon	FALSE	canonical	3	8904	junction_3	854.417771581948	14153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATGGGCCTTGTGTTTC	NA	False	NA	11	True	ATTAAA	-22	NA	127919141	127926260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_127919323_127919760_127919944_127920165_127920341_127920959_127921082_127921310_127921496_127921906_127922066_127922166_127922290_127924189_127924403_127924825_127925028_127925887
transcript_100355.nnic	chrX	-	415	5	NNC	ENSMUSG00000055780.11	novel	4120	8	NA	NA	57	-43813	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	10.6183802907977	47	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAACAGAACTGC	NA	False	NA	NA	False	NA	NA	NA	50889964	50886648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_50886704_50887371_50887431_50887774_50887874_50889689_50889806_50889878
transcript_100358.nic	chrX	-	316	4	ISM	ENSMUSG00000055780.11	ENSMUST00000069509.4	4120	8	57	43813	57	-43813	5prime_fragment	FALSE	canonical	3	22	junction_3	2.86744175568088	451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAACAGAACTGC	NA	False	NA	NA	False	NA	NA	NA	50889964	50886648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_50886704_50887371_50887431_50889689_50889806_50889878
transcript_10036.known	chr10	+	343	2	FSM	ENSMUSG00000025393.13	ENSMUST00000127439.2	343	2	0	0	0	0	multi-exon	FALSE	canonical	3	10408	junction_1	0	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAGAGGTGGGAAAGAGC	NA	False	NA	NA	False	NA	NA	NA	127919174	127919955	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_127919323_127919760
transcript_100362.known	chrX	-	1454	4	FSM	ENSMUSG00000031118.9	ENSMUST00000033449.8	1454	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	37.249906785864	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTGTTGCTCCGTTTCA	NA	False	NA	-2	True	CATAAA	-17	NA	51061649	51057571	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_51058747_51059091_51059163_51059786_51059953_51061607
transcript_100363.known	chrX	-	2651	9	FSM	ENSMUSG00000031119.5	ENSMUST00000033450.3	2651	9	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_5	29.8493613834534	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGCTGGAAAATTTCCATT	NA	False	NA	-19	True	ATTAAA	-15	NA	51254129	51141897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_51142604_51142693_51142870_51143322_51143460_51145536_51145684_51145777_51145909_51151734_51151901_51163170_51163563_51180518_51180678_51253492
transcript_100365.known	chrX	-	2216	8	FSM	ENSMUSG00000055653.14	ENSMUST00000069360.14	2216	8	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_6	17.9398086582293	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGTTGGTCCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-17	NA	51702798	51361302	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_51361832_51403713_51403874_51454598_51454720_51476985_51477112_51485949_51486084_51517316_51518012_51671673_51671836_51702509
transcript_10037.known	chr10	+	478	3	FSM	ENSMUSG00000025393.13	ENSMUST00000126751.2	478	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5636	991	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTCTGTTTATGTTGC	NA	False	NA	22	True	AATAAA	-15	NA	127924420	127926142	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_127924442_127924825_127925028_127925887
transcript_100371.nic	chrX	-	904	2	ISM	ENSMUSG00000055653.14	ENSMUST00000114857.2	1880	5	-67	194776	-67	-194776	5prime_fragment	FALSE	canonical	3	258	junction_1	0	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGTGGATAGTATTAAA	NA	False	NA	NA	False	AAAAAG	-1	NA	51702894	51671316	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_51671836_51702509
transcript_100384.known	chrX	-	408	1	FSM	ENSMUSG00000083621.2	ENSMUST00000119571.2	408	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	105489	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTTATGCCATATTTTCA	NA	False	NA	NA	False	AAAACA	-19	NA	51861626	51861218	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_51861200_51861600
transcript_100385.known	chrX	+	1536	2	FSM	ENSMUSG00000073207.2	ENSMUST00000101588.2	1536	2	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	0	529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATATGCCTGTGATTC	NA	False	NA	NA	False	AATAAA	-23	NA	51880076	51888345	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_51880203_51886935
transcript_100386.nnic	chrX	+	1555	2	NNC	ENSMUSG00000073207.2	novel	1536	2	NA	NA	1831	6	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	0	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCCTGTGATTCTTGAAA	NA	False	NA	NA	False	AATAAA	-29	NA	51881907	51888351	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_51882047_51886935
transcript_100418.known	chrX	+	882	1	FSM	ENSMUSG00000081684.5	ENSMUST00000117295.2	882	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	98544	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTTTTTATATGAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	51987464	51988346	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_51987500_51988300
transcript_100419.known	chrX	+	3057	9	FSM	ENSMUSG00000025626.17	ENSMUST00000154864.4	3057	9	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	81.7778049045094	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACTTCCAATAGTTTGAT	NA	False	NA	NA	False	ATTAAA	-17	NA	52001171	52044842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_52001314_52020449_52020584_52020857_52020902_52029101_52029269_52029413_52029558_52031440_52031546_52034760_52034895_52042328_52042456_52042782
transcript_100421.known	chrX	+	4350	11	FSM	ENSMUSG00000025626.17	ENSMUST00000078944.13	4350	11	0	0	0	0	multi-exon	FALSE	canonical	3	199	junction_10	29.4423164849507	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGTGTCTGCTTTGTAA	NA	False	NA	17	True	AATAAA	-17	NA	52001142	52045820	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_52001314_52005429_52005614_52006042_52006145_52020449_52020584_52020857_52020902_52029101_52029269_52029413_52029558_52031440_52031546_52034760_52034895_52042328_52042456_52042782
transcript_100428.known	chrX	+	1289	9	FSM	ENSMUSG00000025630.9	ENSMUST00000026723.9	1289	9	0	0	0	0	multi-exon	FALSE	canonical	3	2155	junction_4	129.05328356923	9107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCACTTTTTGAATTCTTT	NA	False	NA	12	True	AATAAA	-16	NA	52077013	52110536	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_52077128_52087967_52088075_52090964_52091149_52097529_52097596_52101153_52101172_52105223_52105307_52108981_52109029_52109199_52109277_52109943
transcript_100430.known	chrX	-	868	4	FSM	ENSMUSG00000087365.8	ENSMUST00000129764.8	868	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.16024689946929	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGAGAATACAGGAAATT	NA	False	NA	NA	False	NA	NA	NA	52146037	52144083	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_52144368_52144732_52145042_52145534_52145647_52145874
transcript_100432.known	chrX	-	770	2	FSM	ENSMUSG00000087365.8	ENSMUST00000151099.2	770	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTAGTTGTTTTTTTTTT	NA	False	NA	NA	False	ATTAAA	-13	NA	52146067	52145069	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_52145647_52145874
transcript_100433.known	chrX	-	1041	3	FSM	ENSMUSG00000061082.12	ENSMUST00000074861.9	1041	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGTTGGATGGTTTTGC	NA	False	NA	NA	False	AATAAA	-20	NA	52328988	52158871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_52159766_52187295_52187368_52328913
transcript_100435.known	chrX	-	3536	9	FSM	ENSMUSG00000036022.16	ENSMUST00000114838.8	3536	9	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_3	8.54034542626936	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATCGTAAAAGTCTGCCT	NA	False	NA	-13	True	AATAAA	-24	NA	52357897	52332301	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_52335168_52342912_52343010_52347833_52347896_52348717_52348804_52349071_52349174_52349422_52349478_52349566_52349611_52354917_52354997_52357752
transcript_100437.nic	chrX	-	1570	8	ISM	ENSMUSG00000036022.16	ENSMUST00000114841.2	3074	9	-13	10181	-6	-9063	5prime_fragment	FALSE	canonical	3	73	junction_2	9.11603207631075	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCTCCATGGAGGTGTA	NA	False	NA	NA	False	AATATA	-19	NA	52358688	52342803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_52343010_52347833_52347896_52348717_52348804_52349071_52349174_52349422_52349478_52349566_52349611_52354917_52354997_52357752
transcript_100440.nnic	chrX	-	2364	7	NNC	ENSMUSG00000023074.12	novel	1782	7	NA	NA	-58	0	intron_retention	FALSE	canonical	1	3	junction_2	42.1056871323683	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTGTTCTCTCTCCGTTC	NA	False	NA	-4	True	CATAAA	-18	NA	52459437	52433474	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_52434867_52436580_52436743_52440547_52440671_52444532_52444751_52446286_52446363_52446450_52446705_52459298
transcript_100443.known	chrX	-	1763	6	FSM	ENSMUSG00000023074.12	ENSMUST00000023836.4	1763	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	37.7804182083788	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAAGCCCCCT	NA	False	NA	NA	False	AATAAA	-7	NA	52459379	52433897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_52434867_52436580_52436743_52444529_52444751_52446286_52446363_52446450_52446705_52459298
transcript_100449.nnic	chrX	+	741	5	Antisense	novelGene_ENSMUSG00000079593.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_4	1.92028643696715	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAACATGAACTCTGCCCT	NA	False	NA	NA	False	ATTAAA	-4	NA	52549495	52576606	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chrX_+_52549659_52550126_52550264_52551675_52551841_52552289_52552396_52576436
transcript_100454.nnic	chrX	+	972	2	Genic_Genomic	ENSMUSG00000051851.6	novel	401	1	NA	NA	-134	698	multi-exon	FALSE	canonical	3	9	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAATGGAGTCTTACTTAG	NA	False	NA	NA	False	AATAAA	-20	NA	52609864	52611097	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chrX_+_52610392_52610652
transcript_100455.known	chrX	-	1195	1	FSM	ENSMUSG00000067925.5	ENSMUST00000088779.5	1195	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTCTTACTTAGTATAG	NA	False	NA	NA	False	AATAAA	-25	NA	52645649	52644454	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_52644500_52645600
transcript_100456.known	chrX	-	1232	1	FSM	ENSMUSG00000067924.5	ENSMUST00000088778.5	1232	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	198	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAAGGAAATGGAGTCT	NA	False	NA	NA	False	AATAAA	-13	NA	52672375	52671143	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_52671100_52672400
transcript_100466.nnic	chrX	-	644	3	NNC	ENSMUSG00000085998.9	novel	416	3	NA	NA	-1987	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGTAATGATGCTTCAGA	NA	False	NA	NA	False	NA	NA	NA	52714435	52698834	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_52699036_52707926_52708167_52714232
transcript_100470.known	chrX	+	1427	5	FSM	ENSMUSG00000055555.2	ENSMUST00000069209.2	1427	5	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_4	18.2397231338636	683	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTGTTTACCTGTAGTT	NA	False	NA	NA	False	AATAAA	-18	NA	52726792	52740408	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_52727016_52729333_52729516_52735693_52735827_52738241_52738355_52739632
transcript_100481.known	chrX	-	1224	9	FSM	ENSMUSG00000054727.3	ENSMUST00000067940.3	1224	9	0	0	0	0	multi-exon	FALSE	canonical	3	1101	junction_5	153.190241203544	11010	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTGACTTTAGTATATTT	NA	False	NA	-11	True	AGTAAA	-17	NA	52759798	52744867	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_52745154_52745318_52745424_52747619_52747719_52748908_52749009_52749789_52749908_52751980_52752016_52752989_52753054_52753476_52753824_52759728
transcript_100486.known	chrX	-	984	8	FSM	ENSMUSG00000054626.12	ENSMUST00000114810.2	984	8	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_7	54.1238187409392	923	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGAGTGGCAAATAGTCC	NA	False	NA	NA	False	AATAAA	-13	NA	52799663	52785714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798188_52799598
transcript_100487.known	chrX	-	1032	8	FSM	ENSMUSG00000054626.12	ENSMUST00000067763.10	1032	8	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_7	69.0238054173031	791	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGAGTGGCAAATAGTCC	NA	False	NA	NA	False	AATAAA	-13	NA	52799663	52785714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798236_52799598
transcript_10049.known	chr10	-	3302	14	FSM	ENSMUSG00000040043.18	ENSMUST00000099139.9	3302	14	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_13	100.648665396784	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGTCATAAGTACACCTCCA	NA	False	NA	NA	False	NA	NA	NA	128016166	127967426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_127969237_127969509_127969595_127969996_127970078_127970865_127970977_127973342_127973437_127973529_127973577_127973788_127973899_127973986_127974067_127979263_127979422_127981541_127981634_127982470_127982530_127987051_127987225_128015661_128015715_128015817
transcript_100505.nnic	chrX	+	1195	9	NNC	ENSMUSG00000031125.3	novel	1022	8	NA	NA	-45	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	22.852447899514	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTGGCAAATAGTCCTT	NA	False	NA	NA	False	AATAAA	-15	NA	55181886	55198858	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_55181986_55182172_55182301_55183330_55183457_55183770_55183835_55184104_55184140_55192435_55192554_55193247_55193348_55198014_55198114_55198432
transcript_100508.known	chrX	+	1022	8	FSM	ENSMUSG00000031125.3	ENSMUST00000033458.3	1022	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	16.2819544532076	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTGGCAAATAGTCCTT	NA	False	NA	NA	False	AATAAA	-15	NA	55181931	55198858	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_55181986_55183330_55183457_55183770_55183835_55184104_55184140_55192435_55192554_55193247_55193348_55198014_55198114_55198432
transcript_100511.nnic	chrX	+	1008	8	NNC	ENSMUSG00000031125.3	novel	1022	8	NA	NA	-34	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	20.1048273216323	50	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTGGCAAATAGTCCTT	NA	False	NA	NA	False	AATAAA	-15	NA	55181897	55198858	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_55181986_55183378_55183457_55183770_55183835_55184104_55184140_55192435_55192554_55193247_55193348_55198014_55198114_55198432
transcript_100515.nnic	chrX	+	930	7	NIC	ENSMUSG00000031125.3	novel	1022	8	NA	NA	-34	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_1	19.6864307469779	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTGGCAAATAGTCCTT	NA	False	NA	NA	False	AATAAA	-15	NA	55181897	55198858	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_55181986_55183770_55183835_55184104_55184140_55192435_55192554_55193247_55193348_55198014_55198114_55198432
transcript_100520.known	chrX	-	951	8	FSM	ENSMUSG00000073177.9	ENSMUST00000101561.8	951	8	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	4.42165358301205	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGATTTTTTGCAATGTTA	NA	False	NA	NA	False	AATAAA	-19	NA	55258241	55235186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_55235530_55239012_55239112_55241930_55242031_55242833_55242952_55246943_55246979_55247366_55247437_55248032_55248151_55258173
transcript_100523.nic	chrX	-	974	7	NIC	ENSMUSG00000073177.9	novel	951	8	NA	NA	-58	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_4	8.67307455417179	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGATTTTTTGCAATGTTA	NA	False	NA	NA	False	AATAAA	-19	NA	55258299	55235186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_55235530_55239012_55239112_55241930_55242031_55242833_55242952_55247366_55247437_55248032_55248151_55258173
transcript_100527.known	chrX	+	547	3	FSM	ENSMUSG00000085114.2	ENSMUST00000151426.2	547	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGCTGTATTTTCATTTC	NA	False	NA	NA	False	AATAAA	-27	NA	55362967	55366024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_55363107_55364299_55364361_55365677
transcript_100528.known	chrX	+	3738	5	FSM	ENSMUSG00000073176.5	ENSMUST00000101560.4	3738	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	8.6421930087218	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTTTCTGATTCTTTTA	NA	False	NA	6	True	AATAAA	-16	NA	55391759	55411034	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_55391800_55393642_55394089_55398822_55399028_55407826_55407941_55408101
transcript_100534.known	chrX	+	2393	2	FSM	ENSMUSG00000054850.5	ENSMUST00000068106.5	2393	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACATCCTGGCTGCCTCCTG	NA	False	NA	14	True	AAGAAA	-15	NA	55419945	55423159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_55420569_55421389
transcript_100537.known	chrX	+	3766	17	FSM	ENSMUSG00000035967.16	ENSMUST00000039374.9	3766	17	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_10	18.8414436814168	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATTTCTAGGTGTATGTC	NA	False	NA	15	True	AATAAA	-26	NA	55500236	55553199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_55500677_55500808_55500887_55524989_55525140_55525930_55526021_55526249_55526434_55526685_55526815_55529138_55529303_55530598_55530752_55534365_55534499_55538398_55538494_55541875_55542095_55543220_55543345_55544927_55545071_55547020_55547256_55550084_55550460_55551732_55551827_55552239
transcript_100541.known	chrX	-	1040	5	FSM	ENSMUSG00000064016.5	ENSMUST00000081133.5	1040	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.707106781186548	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAACTTCTTACTGCTTTCT	NA	False	NA	NA	False	AATAAA	-35	NA	55594966	55589233	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_55589511_55589905_55590000_55590336_55590676_55592483_55592638_55594790
transcript_100542.known	chrX	-	4234	4	FSM	ENSMUSG00000061273.4	ENSMUST00000059899.3	4234	4	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_2	4.64279609239471	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTTGTGTTTGGTAGTGG	NA	False	NA	-7	True	AATAAA	-14	NA	55643429	55630871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_55634664_55636437_55636542_55640749_55640803_55643144
transcript_100544.nic	chrX	+	2348	17	NIC	ENSMUSG00000060681.16	novel	4976	16	NA	NA	-5	358	combination_of_known_junctions	TRUE	canonical	0	0	junction_8	37.5097903886439	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGATTGACTCTTTCTTATA	NA	False	NA	5	True	CATAAA	-7	NA	55655129	55707099	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_55655181_55655322_55655548_55665685_55665886_55667970_55668049_55668347_55668425_55668719_55668833_55673753_55673860_55678809_55678952_55680145_55680252_55680537_55680627_55683634_55683749_55688727_55688840_55691159_55691314_55696987_55697019_55700333_55700414_55703618_55703725_55706535
transcript_10055.known	chr10	-	1481	13	FSM	ENSMUSG00000040043.18	ENSMUST00000092033.4	1481	13	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_9	21.4048281157936	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCGCAGTGCTGTGAAGTC	NA	False	NA	NA	False	TTTAAA	-14	NA	128012348	127968975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_127969237_127969509_127969595_127969996_127970078_127970865_127970977_127973342_127973437_127973529_127973577_127973788_127973899_127973986_127974067_127979263_127979422_127981541_127981634_127982470_127982530_127987051_127987225_128012218
transcript_100550.known	chrX	+	2356	7	FSM	ENSMUSG00000023092.17	ENSMUST00000023854.10	2356	7	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_5	4.78423336480244	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTCCTGTCTTTTTATTC	NA	False	NA	12	True	AATAAA	-18	NA	55777146	55838706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_55777229_55799694_55799752_55833348_55833531_55834503_55834679_55835236_55835407_55835823_55836011_55837203
transcript_100553.nic	chrX	+	2246	6	NIC	ENSMUSG00000023092.17	novel	2356	7	NA	NA	-98	-13	combination_of_known_junctions	FALSE	canonical	3	22	junction_5	48.3553513067582	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAGCAGCATAGAAAGAGC	NA	False	NA	-9	True	NA	NA	NA	55777048	55838685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_55777229_55799694_55799752_55833348_55833531_55834503_55834679_55835236_55835407_55837203
transcript_100555.known	chrX	-	2891	16	FSM	ENSMUSG00000067878.14	ENSMUST00000114766.8	2891	16	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_7	2.18682926224756	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTCTGTTGTCTCTTTTT	NA	False	NA	NA	False	AGTAAA	-27	NA	55867686	55843217	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_55843463_55844649_55845030_55846362_55846553_55847120_55847203_55849725_55849831_55850759_55850905_55853203_55853331_55854977_55855151_55855397_55855526_55856222_55856912_55858674_55858768_55860884_55860994_55862635_55862800_55864035_55864114_55864203_55864297_55867596
transcript_100556.known	chrX	+	2810	10	FSM	ENSMUSG00000067873.12	ENSMUST00000088652.6	2810	10	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_1	40.9980427114861	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGACTTGAGTTAACTTG	NA	False	NA	16	True	AATAAA	-31	NA	56098974	56112543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_56099126_56099313_56099559_56100857_56101039_56101404_56101453_56101859_56102015_56104245_56104410_56105213_56105314_56109476_56109567_56110365_56110504_56111005
transcript_100557.nic	chrX	+	2780	9	ISM	ENSMUSG00000067873.12	ENSMUST00000088652.6	2810	10	218	0	-65	0	3prime_fragment	FALSE	canonical	3	455	junction_5	31.3996417177012	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGACTTGAGTTAACTTG	NA	False	NA	16	True	AATAAA	-31	NA	56099192	56112543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_+_56099559_56100857_56101039_56101404_56101453_56101859_56102015_56104245_56104410_56105213_56105314_56109476_56109567_56110365_56110504_56111005
transcript_100559.known	chrX	+	1128	6	FSM	ENSMUSG00000067873.12	ENSMUST00000114751.9	1128	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_5	193.065170344109	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCCACTGGCTCACTTAT	NA	False	NA	25	True	NA	NA	NA	56098942	56102566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_56099126_56099313_56099559_56100857_56101039_56101404_56101453_56101859_56102015_56102250
transcript_10056.known	chr10	+	2398	18	FSM	ENSMUSG00000044005.14	ENSMUST00000159440.8	2398	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	26.6050181285294	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTATCACCATTGTAGCACC	NA	False	NA	75	True	NA	NA	NA	128030594	128045873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_128030777_128035050_128035151_128035505_128035628_128036012_128036172_128036754_128036835_128037074_128037239_128037427_128037487_128039691_128039725_128039943_128040003_128040529_128040597_128040729_128040781_128040956_128041134_128042740_128042873_128043166_128043260_128043429_128043492_128044459_128044537_128044974_128045039_128045156
transcript_100560.nic	chrX	+	1066	5	ISM	ENSMUSG00000067873.12	ENSMUST00000114751.9	1128	6	250	0	-65	0	3prime_fragment	FALSE	canonical	3	35	junction_4	215.852380111964	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCCACTGGCTCACTTAT	NA	False	NA	25	True	NA	NA	NA	56099192	56102566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_+_56099559_56100857_56101039_56101404_56101453_56101859_56102015_56102250
transcript_100562.known	chrX	-	2139	10	FSM	ENSMUSG00000031134.17	ENSMUST00000140384.8	2139	10	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_8	6.66296193358442	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAAAAAAATTAGCCTT	NA	False	NA	NA	False	AATATA	-28	NA	56438341	56428889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_56429922_56430492_56430582_56433420_56433504_56433881_56434008_56434104_56434220_56434778_56434932_56435423_56435596_56436631_56436739_56436926_56437059_56438211
transcript_100565.known	chrX	-	2108	9	FSM	ENSMUSG00000031134.17	ENSMUST00000114726.8	2108	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_8	24.9871842151132	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACCCTGAAGCTGCAAAC	NA	False	NA	-16	True	AATAAA	-15	NA	56438396	56431721	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_56432754_56433420_56433504_56433881_56434008_56434104_56434220_56434778_56434932_56435423_56435596_56436631_56436739_56436926_56437062_56438211
transcript_10057.known	chr10	+	2573	18	FSM	ENSMUSG00000044005.14	ENSMUST00000044776.13	2573	18	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_3	13.3766309680488	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATAATTTTTATTTTATAT	NA	False	NA	10	True	AATAAA	-16	NA	128030325	128045808	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_128030777_128035050_128035151_128035505_128035628_128036041_128036172_128036754_128036835_128037074_128037239_128037427_128037487_128039691_128039725_128039943_128040003_128040529_128040597_128040729_128040781_128040956_128041134_128042740_128042873_128043166_128043260_128043429_128043492_128044459_128044537_128044974_128045039_128045156
transcript_100574.known	chrX	+	2156	17	FSM	ENSMUSG00000079584.3	ENSMUST00000114725.3	2156	17	0	0	0	0	multi-exon	FALSE	canonical	1	199	junction_7	106.775300719548	1994	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAAACCTCCCTGTCTGGC	NA	False	NA	9	True	TATAAA	-2	NA	56454513	56534127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_56454734_56459619_56459688_56461126_56461221_56463018_56463147_56463508_56463639_56467202_56467331_56468624_56468737_56478568_56478649_56481769_56481879_56482743_56482877_56484923_56485044_56485247_56485306_56508440_56508601_56509625_56509775_56513777_56513890_56517713_56517886_56533944
transcript_100595.known	chrX	+	3949	3	FSM	ENSMUSG00000067860.12	ENSMUST00000088627.11	3949	3	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_2	9.5	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTTATAACTTTTTTTG	9500	False	NA	12	True	AATAAA	-18	NA	57076002	57081919	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_57077598_57078721_57078886_57079729
transcript_10060.known	chr10	+	381	3	FSM	ENSMUSG00000044005.14	ENSMUST00000152928.2	381	3	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	8	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGGGAATTAAACAGTTCAA	NA	False	NA	NA	False	AAAACA	-21	NA	128030674	128035684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_128030777_128035050_128035151_128035505
transcript_100600.known	chrX	+	1951	3	FSM	ENSMUSG00000067860.12	ENSMUST00000088629.4	1951	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	99.5	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGATTATTGTTTTAT	9867	False	NA	NA	False	NA	NA	NA	57076369	57087096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_57077598_57078721_57078886_57086537
transcript_100603.known	chrX	+	1572	2	FSM	ENSMUSG00000046180.12	ENSMUST00000062542.5	1572	2	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	0	399	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTCAGCAGTGTTTGTTC	NA	False	NA	13	True	AATAAA	-18	NA	57956820	57965664	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_57956922_57964193
transcript_100605.known	chrX	-	2499	5	FSM	ENSMUSG00000031137.18	ENSMUST00000033473.12	2499	5	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	5.62916512459885	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAACTTCAATGTGTGTT	NA	False	NA	NA	False	AATAAA	-25	NA	58179796	58107504	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_58109030_58112760_58112960_58171253_58171358_58177199_58177311_58179236
transcript_10061.known	chr10	-	1583	2	FSM	ENSMUSG00000051346.10	ENSMUST00000061995.10	1583	2	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_1	0	564	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTCTGTCTATAAAATTGC	NA	False	NA	0	True	AATAAA	-41	NA	128047676	128045776	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128047261_128047577
transcript_100612.nnic	chrX	-	4083	28	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	557	0	at_least_one_novel_splicesite	FALSE	canonical	3	198	junction_27	79.0220750182634	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGGTGTTCGTGTATT	NA	False	NA	-2	True	AATAAA	-29	NA	59223892	59101315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
transcript_100613.known	chrX	-	4227	28	FSM	ENSMUSG00000031139.17	ENSMUST00000063507.11	4227	28	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_27	54.2283947104	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGGTGTTCGTGTATT	NA	False	NA	-2	True	AATAAA	-29	NA	59224449	59101315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223941
transcript_100619.nic	chrX	-	3318	16	NIC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	-117	-56486	combination_of_known_junctions	FALSE	canonical	3	25	junction_2	177.057228664131	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCTGTTCTACTTTGTTT	NA	False	NA	-1	True	NA	NA	NA	59224566	59157804	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_59158819_59160462_59160507_59164448_59164497_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223941
transcript_10062.known	chr10	+	2144	4	FSM	ENSMUSG00000025389.8	ENSMUST00000026455.8	2144	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.24721912892465	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCATTTAAGACTTTGGAAT	364	False	NA	NA	False	AATAAA	-19	NA	128061706	128067681	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_128062111_128062916_128063082_128063501_128063583_128066187
transcript_100621.nnic	chrX	-	3009	15	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	557	-56486	at_least_one_novel_splicesite	FALSE	canonical	3	198	junction_14	93.2665972536004	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCTGTTCTACTTTGTTT	NA	False	NA	-1	True	NA	NA	NA	59223892	59157804	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
transcript_100622.nic	chrX	-	3270	15	ISM	ENSMUSG00000031139.17	ENSMUST00000063507.11	4227	28	-117	56489	-117	-56486	5prime_fragment	FALSE	canonical	3	390	junction_14	50.407775963149	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCTGTTCTACTTTGTTT	NA	False	NA	-1	True	NA	NA	NA	59224566	59157804	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223941
transcript_100631.nnic	chrX	-	1050	8	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	557	-74195	at_least_one_novel_splicesite	FALSE	canonical	3	198	junction_7	118.163152514838	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGAAAAGTTCTGCTCAT	NA	False	NA	NA	False	NA	NA	NA	59223892	59175513	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
transcript_100633.nnic	chrX	-	812	5	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	557	-92532	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	217.092722125823	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGCCAGGTCTGGTGGT	NA	False	NA	NA	False	ATTAAA	-7	NA	59223892	59193850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_59194024_59198259_59198351_59200962_59201078_59205586_59205656_59223528
transcript_100634.nnic	chrX	-	1073	5	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	-117	-92532	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	209.325703151811	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGCCAGGTCTGGTGGT	NA	False	NA	NA	False	ATTAAA	-7	NA	59224566	59193850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_59194024_59198259_59198351_59200962_59201078_59205586_59205656_59223941
transcript_100635.known	chrX	+	1210	1	FSM	ENSMUSG00000082226.5	ENSMUST00000117865.3	1210	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGACCTTATTTTAAATTC	2325	False	NA	NA	False	NA	NA	NA	59591613	59592823	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_59591600_59592800
transcript_100649.known	chrX	+	1459	1	FSM	ENSMUSG00000057615.6	ENSMUST00000075983.6	1459	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	135	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGTTGTCTTTTCATGG	NA	False	NA	13	True	AATAAA	-26	NA	60753102	60754561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_60753100_60754600
transcript_100653.known	chrX	+	1931	4	FSM	ENSMUSG00000045330.9	ENSMUST00000178085.8	1931	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2.94392028877595	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAAATCTTTTCTGTTTGG	NA	False	NA	NA	False	AATAAA	-21	NA	61327104	61335684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_61327160_61332956_61333046_61333767_61333841_61333970
transcript_100654.known	chrX	+	1970	4	FSM	ENSMUSG00000045330.9	ENSMUST00000051414.2	1970	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	2.62466929133727	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAAATCTTTTCTGTTTGG	NA	False	NA	NA	False	AATAAA	-21	NA	61330747	61335684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_61330842_61332956_61333046_61333767_61333841_61333970
transcript_10066.nnic	chr10	-	638	3	Antisense	novelGene_ENSMUSG00000039994.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_2	8.5	32	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCGGCTCTGCAGACCTT	NA	False	NA	NA	False	NA	NA	NA	128068174	128064984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr10_-_128065342_128066773_128066877_128067996
transcript_100666.nnic	chrX	-	727	4	NNC	ENSMUSG00000085757.8	novel	594	3	NA	NA	5301	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	20.4993224820291	232	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATGAGTTGATTT	NA	False	NA	NA	False	AATAAA	-25	NA	61565316	61554144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_61554605_61558040_61558144_61564384_61564454_61565221
transcript_10068.nnic	chr10	-	561	3	Antisense	novelGene_ENSMUSG00000039994.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_2	9	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCGGCTCTGCAGACCTT	NA	False	NA	NA	False	NA	NA	NA	128068717	128064984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr10_-_128065342_128066773_128066877_128068616
transcript_100692.known	chrX	-	594	3	FSM	ENSMUSG00000085757.8	ENSMUST00000133350.8	594	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	27.5	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATGAGTTGATTT	NA	False	NA	NA	False	AATAAA	-25	NA	61559675	61554144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_61554605_61558040_61558144_61559644
transcript_100693.nnic	chrX	-	658	3	NNC	ENSMUSG00000085757.8	novel	594	3	NA	NA	5301	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_2	16	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATGAGTTGATTT	NA	False	NA	NA	False	AATAAA	-25	NA	61565316	61554144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_61554605_61558040_61558144_61565221
transcript_100694.nnic	chrX	-	663	3	NNC	ENSMUSG00000085757.8	novel	594	3	NA	NA	4549	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	19	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATGAGTTGATTT	NA	False	NA	NA	False	AATAAA	-25	NA	61566068	61554144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_61554605_61558040_61558144_61565968
transcript_100695.nnic	chrX	-	632	3	NNC	ENSMUSG00000085757.8	novel	594	3	NA	NA	-720	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	28	174	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATGAGTTGATTT	NA	False	NA	NA	False	AATAAA	-25	NA	61571337	61554144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_61554605_61558040_61558144_61571268
transcript_100702.nnic	chrX	-	658	3	NNC	ENSMUSG00000085757.8	novel	594	3	NA	NA	-26427	0	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_2	22.5	229	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATGAGTTGATTT	NA	False	NA	NA	False	AATAAA	-25	NA	61597044	61554144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_61554605_61558040_61558144_61596949
transcript_100706.nnic	chrX	-	662	3	NNC	ENSMUSG00000085757.8	novel	594	3	NA	NA	-27925	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_2	26.5	232	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATGAGTTGATTT	NA	False	NA	NA	False	AATAAA	-25	NA	61598542	61554144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_61554605_61558040_61558144_61598443
transcript_100707.known	chrX	-	747	3	FSM	ENSMUSG00000085757.8	ENSMUST00000129479.2	747	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	17.5	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATGAGTTGATTT	NA	False	NA	NA	False	AATAAA	-25	NA	61570617	61554144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_61554605_61558040_61558144_61570433
transcript_100708.known	chrX	+	1649	4	FSM	ENSMUSG00000031179.15	ENSMUST00000033522.15	1649	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	1.69967317119759	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGTTTAGTCTCCCGTT	NA	False	NA	NA	False	AATAAA	-20	NA	63217153	63222384	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_63217298_63219533_63219620_63220397_63220469_63221036
transcript_100710.known	chrX	+	854	3	FSM	ENSMUSG00000031181.3	ENSMUST00000033524.3	854	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTGAGTTACTGTTTTTA	NA	False	NA	NA	False	AAAACA	-1	NA	64091249	64092620	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_64091683_64092028_64092158_64092328
transcript_100711.nnic	chrX	-	1689	9	NNC	ENSMUSG00000079578.2	novel	782	8	NA	NA	-933	679	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_8	9.82264602843857	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTGAAATATGTCAATTAAA	NA	False	NA	NA	False	AATAAA	-23	NA	66738101	66725826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_66726652_66726758_66726864_66732572_66732672_66733445_66733546_66734431_66734550_66736337_66736373_66736521_66736592_66737059_66737213_66737917
transcript_100712.nnic	chrX	-	1597	9	NNC	ENSMUSG00000079578.2	novel	782	8	NA	NA	-886	679	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	20.4862758938759	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTGAAATATGTCAATTAAA	NA	False	NA	NA	False	AATAAA	-23	NA	66738054	66725826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_66726652_66726758_66726864_66732572_66732672_66733445_66733546_66734431_66734550_66736337_66736373_66736521_66736592_66737059_66737213_66737962
transcript_100713.known	chrX	-	782	8	FSM	ENSMUSG00000079578.2	ENSMUST00000114675.2	782	8	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_5	5.823947745897	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCATTTGTCATTCTTTTGT	NA	False	NA	NA	False	CATAAA	-44	NA	66737168	66726505	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_66726652_66726758_66726864_66732572_66732672_66733445_66733546_66734431_66734550_66736337_66736373_66736521_66736592_66737059
transcript_100715.nnic	chrX	+	1706	9	NNC	ENSMUSG00000079577.2	novel	782	8	NA	NA	-952	675	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	9.9365172470036	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTACTTGAAATATGTCAAT	NA	False	NA	NA	False	AATAAA	-19	NA	66738351	66750631	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_66738557_66739259_66739413_66739880_66739951_66740099_66740135_66741912_66742031_66742916_66743017_66743790_66743890_66749598_66749704_66749810
transcript_100717.known	chrX	+	4076	16	FSM	ENSMUSG00000000838.18	ENSMUST00000114657.9	4076	16	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_11	161.476190195335	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAGTCTGACAGATGTTT	NA	False	NA	20	True	ATTAAA	-26	NA	67722416	67761569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854_67748987_67751647_67751735_67754189_67754386_67755836_67756020_67756846_67756930_67759170
transcript_100718.known	chrX	+	4058	17	FSM	ENSMUSG00000000838.18	ENSMUST00000114653.2	4058	17	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_14	173.862182759075	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAGTCTGACAGATGTTT	NA	False	NA	20	True	ATTAAA	-26	NA	67722422	67761569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854_67748987_67749466_67749530_67751647_67751735_67754189_67754386_67755911_67756020_67756846_67756930_67759170
transcript_100729.known	chrX	+	842	6	FSM	ENSMUSG00000062170.13	ENSMUST00000071848.7	842	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	319.056484027515	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGATTCTTTTTGTTAAA	NA	False	NA	27	True	ATTAAA	-27	NA	67805539	67848173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_67805838_67807537_67807616_67812561_67812700_67815650_67815748_67847210_67847300_67848031
transcript_10073.known	chr10	+	4457	29	FSM	ENSMUSG00000039994.16	ENSMUST00000055539.11	4457	29	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_23	47.0561431934758	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTTTGTTGTCTTCCTCC	6591	False	NA	20	True	AATAAA	-20	NA	128067933	128088810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_128068045_128075702_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086153_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088060
transcript_100730.known	chrX	+	799	5	FSM	ENSMUSG00000062170.13	ENSMUST00000069731.12	799	5	0	0	0	0	multi-exon	FALSE	canonical	3	455	junction_2	146.787899705664	11232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGATTCTTTTTGTTAAA	NA	False	NA	27	True	ATTAAA	-27	NA	67805444	67848173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_67805838_67807537_67807616_67815650_67815748_67847210_67847300_67848031
transcript_100731.known	chrX	+	679	4	FSM	ENSMUSG00000062170.13	ENSMUST00000114647.8	679	4	0	0	0	0	multi-exon	FALSE	canonical	3	331	junction_1	201.191451110627	8065	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGATTCTTTTTGTTAAA	NA	False	NA	27	True	ATTAAA	-27	NA	67805486	67848173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_67805838_67815650_67815748_67847210_67847300_67848031
transcript_100732.known	chrX	-	525	2	FSM	ENSMUSG00000056815.2	ENSMUST00000074894.2	525	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGCCTGTCTCTGTGTTCT	NA	False	NA	NA	False	AATAAA	-19	NA	67936659	67935980	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_67936355_67936508
transcript_100733.nnic	chrX	-	715	2	Genic_Genomic	ENSMUSG00000082926.4	novel	750	1	NA	NA	-45	35	multi-exon	FALSE	canonical	0	0	junction_1	0	1054	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTCATTGGCTTTCATTA	NA	False	NA	NA	False	AATAAA	-14	NA	68649896	68649066	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chrX_-_68649598_68649712
transcript_100734.known	chrX	-	750	1	FSM	ENSMUSG00000082926.4	ENSMUST00000120762.2	750	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	89715	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCTTTAAGAGCAACAAATA	NA	False	NA	NA	False	NA	NA	NA	68649851	68649101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_68649100_68649900
transcript_100735.known	chrX	+	525	2	FSM	ENSMUSG00000059690.2	ENSMUST00000075654.2	525	2	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGCCTGTCTCTGTGTTCT	NA	False	NA	NA	False	AATAAA	-19	NA	68988905	68989584	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_68989057_68989210
transcript_100736.known	chrX	-	4972	9	FSM	ENSMUSG00000035847.16	ENSMUST00000101509.9	4972	9	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_4	5.15842757049084	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTGGGGTTCTTAATGT	NA	False	NA	62	True	AATAAA	-20	NA	69408690	69386674	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_69390280_69394532_69394707_69396749_69396877_69401872_69402044_69403554_69403756_69404648_69404738_69406582_69406761_69407407_69407545_69408400
transcript_10074.known	chr10	+	4341	29	FSM	ENSMUSG00000039994.16	ENSMUST00000105244.8	4341	29	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_28	54.1443059549842	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGGAAAGAGTCATATAGC	6615	False	NA	-69	True	NA	NA	NA	128067957	128088721	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_128068045_128075702_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086153_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088063
transcript_100741.known	chrX	+	1094	3	FSM	ENSMUSG00000045237.6	ENSMUST00000053981.6	1094	3	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_1	1.5	1763	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAAGTGTCTAGCTCCCT	NA	False	NA	14	True	AATAAA	-21	NA	69429482	69433023	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_69429758_69431499_69431773_69432477
transcript_100743.nic	chrX	-	2366	7	NIC	ENSMUSG00000073139.10	novel	1307	7	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_5	74.9288551449529	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGTATTTTATTCT	NA	False	NA	-1	True	AATAAA	-20	NA	69520797	69503358	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_69504899_69505796_69505921_69506450_69506628_69508608_69508693_69510759_69510810_69513723_69513901_69520583
transcript_100744.known	chrX	-	1307	7	FSM	ENSMUSG00000073139.10	ENSMUST00000114630.3	1307	7	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_5	21.8587638158144	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCATCTGAAGCCTCGTTT	NA	False	NA	NA	False	NA	NA	NA	69520786	69504564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_69504899_69505796_69505921_69506450_69506628_69508608_69508693_69510759_69510968_69513723_69513901_69520583
transcript_100747.nnic	chrX	-	2339	6	NIC	ENSMUSG00000073139.10	novel	1307	7	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_5	86.1519587705352	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGTATTTTATTCT	NA	False	NA	-1	True	AATAAA	-20	NA	69520789	69503358	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_69504899_69505796_69505921_69506450_69506628_69508608_69508693_69510759_69510968_69520583
transcript_100749.known	chrX	-	2429	6	FSM	ENSMUSG00000073139.10	ENSMUST00000101506.10	2429	6	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_3	81.8300678235085	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGTATTTTATTCT	NA	False	NA	-1	True	AATAAA	-20	NA	69520786	69503358	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_69504899_69505796_69505921_69506450_69506628_69510759_69510968_69513723_69513901_69520583
transcript_100754.known	chrX	+	3316	15	FSM	ENSMUSG00000031337.17	ENSMUST00000033700.12	3316	15	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_10	89.0701683952556	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATAAATATATTAACTAAA	NA	False	NA	-14	True	AATAAA	-18	NA	70258644	70358871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_70258689_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339954_70343171_70343381_70345339_70345433_70346106_70346221_70351305_70351483_70357251
transcript_100755.known	chrX	+	3338	15	FSM	ENSMUSG00000031337.17	ENSMUST00000114617.2	3338	15	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_10	112.146496756225	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATAAATATATTAACTAAA	NA	False	NA	-14	True	AATAAA	-18	NA	70258687	70358871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_70258754_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339954_70343171_70343381_70345339_70345433_70346106_70346221_70351305_70351483_70357251
transcript_100757.known	chrX	+	4111	14	FSM	ENSMUSG00000031337.17	ENSMUST00000156452.8	4111	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_10	92.2693510115611	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGGGAAGCAAAGAGAAAAC	NA	False	NA	NA	False	AAAAAG	-4	NA	70258664	70353917	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_70258689_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339954_70343171_70343381_70345339_70345433_70346106_70346221_70351305
transcript_100772.known	chrX	-	3600	10	FSM	ENSMUSG00000035776.15	ENSMUST00000037391.12	3600	10	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_4	6.51683479938452	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTGATGTGATCTGTCT	NA	False	NA	1	True	NA	NA	NA	70536455	70463665	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_70466356_70467629_70467696_70472652_70472773_70473916_70473956_70481739_70481806_70484130_70484218_70484679_70484752_70493544_70493614_70494216_70494280_70536127
transcript_100775.known	chrX	-	3327	9	FSM	ENSMUSG00000035776.15	ENSMUST00000080035.11	3327	9	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_7	17.0399347123162	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTGATGTGATCTGTCT	NA	False	NA	1	True	NA	NA	NA	70536251	70463665	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_70466356_70467629_70467696_70472652_70472773_70473916_70473956_70481739_70481806_70484130_70484218_70484679_70484752_70494216_70494280_70536127
transcript_100777.known	chrX	-	1609	5	FSM	ENSMUSG00000035776.15	ENSMUST00000128515.2	1609	5	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	5.76085931090146	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTCGCTGCTAACACCAT	NA	False	NA	NA	False	NA	NA	NA	70536255	70482940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_70484218_70484679_70484752_70493544_70493614_70494216_70494280_70536127
transcript_100780.known	chrX	+	1544	5	FSM	ENSMUSG00000015217.12	ENSMUST00000015361.11	1544	5	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	352.483687565822	3788	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGACTCACCAGTCTTT	NA	False	NA	NA	False	AATAAA	-45	NA	70599546	70604282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_70599615_70601662_70601814_70602038_70602179_70602703_70602879_70603272
transcript_100782.known	chrX	+	1743	5	FSM	ENSMUSG00000015217.12	ENSMUST00000114582.9	1743	5	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	303.596360320739	2809	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGACTCACCAGTCTTT	NA	False	NA	NA	False	AATAAA	-45	NA	70599533	70604282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_70599797_70601658_70601814_70602038_70602179_70602703_70602879_70603272
transcript_100783.known	chrX	+	1728	5	FSM	ENSMUSG00000015217.12	ENSMUST00000088874.10	1728	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	352.060630431748	2659	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGACTCACCAGTCTTT	NA	False	NA	NA	False	AATAAA	-45	NA	70599595	70604282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_70599844_70601658_70601814_70602038_70602179_70602703_70602879_70603272
transcript_100790.known	chrX	+	347	1	FSM	ENSMUSG00000083411.4	ENSMUST00000117119.2	347	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAATAAAGTTTTCCTTTA	NA	False	NA	NA	False	NA	NA	NA	70847293	70847640	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_70847300_70847600
transcript_100792.known	chrX	+	4652	4	FSM	ENSMUSG00000073131.13	ENSMUST00000114577.8	4652	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	185.102374076858	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGCTGTGTCCTCATTCG	NA	False	NA	16	True	ATTAAA	-20	NA	70859529	70868312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_70859941_70860076_70860306_70863673_70863784_70864410
transcript_100793.known	chrX	+	483	4	FSM	ENSMUSG00000073131.13	ENSMUST00000138979.2	483	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	185.749532674752	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATATGTTACATAATTCCG	NA	False	NA	-47	True	ATTAAA	-37	NA	70860418	70864590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_70860547_70861248_70861314_70863673_70863784_70864410
transcript_100794.known	chrX	+	4195	3	FSM	ENSMUSG00000073131.13	ENSMUST00000114576.9	4195	3	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_1	56.5	2248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGCTGTGTCCTCATTCG	NA	False	NA	16	True	ATTAAA	-20	NA	70860363	70868312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_70860547_70863673_70863784_70864410
transcript_100795.known	chrX	+	4290	3	FSM	ENSMUSG00000073131.13	ENSMUST00000114575.4	4290	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	199.5	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGCTGTGTCCTCATTCG	NA	False	NA	16	True	ATTAAA	-20	NA	70860395	70868312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_70860674_70863673_70863784_70864410
transcript_100796.known	chrX	+	5931	4	FSM	ENSMUSG00000033361.14	ENSMUST00000048790.7	5931	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0.471404520791032	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTACCTTGTCCTGGTCG	NA	False	NA	6	True	AATAAA	-17	NA	71006587	71016328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_71006654_71009420_71009459_71010107_71010269_71010662
transcript_100799.nnic	chrX	+	2215	7	Genic_Genomic	ENSMUSG00000033343.2	novel	948	1	NA	NA	-4091	383	multi-exon	FALSE	canonical	2	4	junction_1	3.07769755210323	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATTTAGTGTGTGGTGTGG	NA	False	NA	NA	False	AATAAA	-22	NA	71261531	71266953	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chrX_+_71261614_71262220_71262501_71263739_71263837_71264233_71264433_71264562_71264653_71264786_71264860_71265559
transcript_100801.known	chrX	-	1821	4	FSM	ENSMUSG00000043453.6	ENSMUST00000088481.5	1821	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	0.471404520791032	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCACATGCTCCAAATTTT	NA	False	NA	NA	False	AATAAA	-14	NA	71430464	71425475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_71427050_71427946_71428036_71428780_71428874_71430399
transcript_100804.known	chrX	-	1124	5	FSM	ENSMUSG00000031347.13	ENSMUST00000114550.8	1124	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	282.3605850681	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTCATTCTTTAAAGGAT	NA	False	NA	-13	True	AATAAA	-17	NA	71961599	71957309	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_71957900_71958445_71958584_71959870_71960000_71960293_71960453_71961491
transcript_100810.known	chrX	-	1286	5	FSM	ENSMUSG00000031347.13	ENSMUST00000114551.10	1286	5	0	0	0	0	multi-exon	TRUE	canonical	3	590	junction_4	36.4862987983161	1449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTTGTGGATTTTTACA	NA	False	NA	-2	True	CATAAA	-17	NA	71962017	71957137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_71957900_71958445_71958584_71959870_71960000_71960293_71960453_71961919
transcript_100811.known	chrX	-	1026	4	FSM	ENSMUSG00000031347.13	ENSMUST00000033713.11	1026	4	0	0	0	0	multi-exon	FALSE	canonical	3	611	junction_2	29.9146935282461	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTCATTCTTTAAAGGAT	NA	False	NA	-13	True	AATAAA	-17	NA	71960462	71957309	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_71957900_71958445_71958584_71959870_71960000_71960293
transcript_100822.known	chrX	+	2168	8	FSM	ENSMUSG00000031349.5	ENSMUST00000033715.5	2168	8	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_6	28.7537042866494	1086	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTTTGTGTTGCTGGCT	NA	False	NA	NA	False	AATAAA	-6	NA	71962162	72002120	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_71962300_71969899_71970017_71973229_71973389_71992770_71992918_71996448_71996578_71998677_71998821_71999942_72000046_72000887
transcript_10083.nnic	chr10	+	1617	4	NNC	ENSMUSG00000047631.5	novel	1258	2	NA	NA	-5380	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	4.18993502999218	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCACAGTATTTATCATTCA	1565	False	NA	NA	False	ATTAAA	-16	NA	128098485	128106022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_128098581_128104009_128104295_128104560_128104639_128104863
transcript_10084.nnic	chr10	+	1332	3	NNC	ENSMUSG00000047631.5	novel	1258	2	NA	NA	-5380	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	2	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCACAGTATTTATCATTCA	1565	False	NA	NA	False	ATTAAA	-16	NA	128098485	128106022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_128098581_128104560_128104639_128104863
transcript_100840.known	chrX	+	3533	19	FSM	ENSMUSG00000031351.16	ENSMUST00000114546.9	3533	19	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_9	16.5279411756629	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCGTGTGTATGTGTGCAC	NA	False	NA	45	True	AATAAA	-45	NA	72030965	72075149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_72031126_72040640_72040719_72040887_72041012_72041343_72041410_72042141_72042181_72042274_72042353_72042856_72042944_72043622_72043707_72044593_72044678_72045013_72045053_72046180_72046265_72046978_72047066_72056045_72056235_72059344_72059456_72060300_72060382_72061979_72062049_72064473_72064577_72072450_72072550_72073278
transcript_100842.nic	chrX	+	1176	12	ISM	ENSMUSG00000031351.16	ENSMUST00000164800.8	3557	19	0	27942	0	6196	5prime_fragment	FALSE	canonical	3	42	junction_6	15.1226391504933	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTATGCAATGTAATTTT	NA	False	NA	NA	False	AATGAA	-1	NA	72030944	72047207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_+_72031126_72040640_72040719_72040887_72041012_72041343_72041410_72042141_72042181_72042274_72042353_72042856_72042944_72043622_72043707_72044593_72044678_72045010_72045053_72046180_72046265_72046978
transcript_100843.nic	chrX	+	1429	12	ISM	ENSMUSG00000031351.16	ENSMUST00000164800.8	3557	19	0	27689	0	6449	5prime_fragment	FALSE	canonical	3	42	junction_6	15.1226391504933	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGCTTATAGGACAAGGC	NA	False	NA	NA	False	ATTAAA	-17	NA	72030944	72047460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_+_72031126_72040640_72040719_72040887_72041012_72041343_72041410_72042141_72042181_72042274_72042353_72042856_72042944_72043622_72043707_72044593_72044678_72045010_72045053_72046180_72046265_72046978
transcript_100848.nnic	chrX	-	2603	5	NNC	ENSMUSG00000050424.10	novel	1280	2	NA	NA	-2596	0	at_least_one_novel_splicesite	FALSE	canonical	1	35	junction_1	20.9568008054665	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTATGTTCTTTCTGGC	NA	False	NA	-7	True	AATAAA	-14	NA	72083305	72077593	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_72077934_72078769_72080775_72080892_72080952_72081548_72081672_72083229
transcript_100855.nnic	chrX	-	1235	9	NNC	ENSMUSG00000079845.9	novel	1162	9	NA	NA	-49	0	at_least_one_novel_splicesite	FALSE	canonical	3	72	junction_8	86.1506674379253	468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	72126133	72117950	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_72118324_72118440_72118537_72120338_72120438_72121630_72121731_72122581_72122700_72124325_72124395_72125079_72125208_72125590_72125674_72125964
transcript_100858.nnic	chrX	-	1199	9	NNC	ENSMUSG00000079845.9	novel	1162	9	NA	NA	-49	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_7	100.580502583751	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	72126133	72117950	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_72118324_72118440_72118537_72120338_72120438_72121630_72121731_72122581_72122700_72124325_72124395_72125079_72125208_72125626_72125674_72125964
transcript_10086.known	chr10	-	1360	4	FSM	ENSMUSG00000025383.3	ENSMUST00000026449.3	1360	4	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	5.73488351136175	249	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGGTCTAAATTTCTAA	NA	False	NA	NA	False	NA	NA	NA	128133953	128132007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128132845_128132946_128133094_128133358_128133461_128133679
transcript_100872.known	chrX	-	1162	9	FSM	ENSMUSG00000079845.9	ENSMUST00000078775.13	1162	9	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_8	89.7743699504486	856	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	72126084	72117950	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72118324_72118440_72118537_72120338_72120438_72121630_72121731_72122581_72122700_72124325_72124395_72125079_72125208_72125590_72125674_72125988
transcript_100873.known	chrX	-	372	5	FSM	ENSMUSG00000079845.9	ENSMUST00000114534.2	372	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	121.278604873242	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAACTGTCCAAAACATT	NA	False	NA	NA	False	AAGAAA	-41	NA	72126062	72122645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72122700_72124325_72124395_72125079_72125208_72125626_72125674_72125988
transcript_10089.known	chr10	+	4445	26	FSM	ENSMUSG00000005682.10	ENSMUST00000005825.8	4445	26	0	0	0	0	multi-exon	FALSE	canonical	2	78	junction_17	49.8603810655314	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCTAGTGTGGGATTCTTT	NA	False	NA	15	True	AATAAA	-24	NA	128139203	128157222	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_128139341_128139963_128140363_128143933_128144104_128144204_128144326_128144472_128144551_128144905_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149130_128149483_128149613_128149710_128149911_128150051_128150186_128150316_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151355_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154031_128154212_128154813_128154908_128156116_128156315_128156602
transcript_10090.known	chr10	+	4379	26	FSM	ENSMUSG00000005682.10	ENSMUST00000218315.2	4379	26	0	0	0	0	multi-exon	FALSE	canonical	2	164	junction_12	40.3480061465248	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCTAGTGTGGGATTCTTT	NA	False	NA	15	True	AATAAA	-24	NA	128139242	128157222	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_128139341_128139963_128140363_128143933_128144104_128144204_128144326_128144472_128144551_128144905_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149130_128149483_128149613_128149710_128149911_128150051_128150186_128150316_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151382_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154031_128154212_128154813_128154908_128156116_128156315_128156602
transcript_100901.known	chrX	-	1584	9	FSM	ENSMUSG00000057836.13	ENSMUST00000114524.9	1584	9	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	496.010190797528	2718	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	-5	True	AATAAA	-18	NA	72140623	72129898	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138551_72138689_72140586
transcript_100902.known	chrX	-	1645	9	FSM	ENSMUSG00000057836.13	ENSMUST00000074619.6	1645	9	0	0	0	0	multi-exon	FALSE	canonical	3	586	junction_7	340.598531081683	3127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	-7	True	AATAAA	-16	NA	72140701	72129900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138566_72138689_72140586
transcript_100903.known	chrX	-	3783	7	FSM	ENSMUSG00000057836.13	ENSMUST00000172709.8	3783	7	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_5	560.301406982587	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	-5	True	AATAAA	-18	NA	72140629	72129898	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72136911_72137788_72137859_72138551_72138689_72140586
transcript_100916.nnic	chrX	-	1189	9	NNC	ENSMUSG00000058328.14	novel	1650	9	NA	NA	-33	303	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_8	132.269551957357	270	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72161341	72151711	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_72152123_72152218_72152324_72153534_72153634_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161230
transcript_10093.nnic	chr10	+	2053	3	NNC	ENSMUSG00000005682.10	novel	1601	3	NA	NA	-16	-8	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	135	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAACCCACCCAAA	NA	False	NA	NA	False	NA	NA	NA	128139187	128143289	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_128139341_128139963_128140995_128142420
transcript_100936.nnic	chrX	-	1090	8	NNC	ENSMUSG00000058328.14	novel	1474	8	NA	NA	-33	303	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_7	139.651022779159	266	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72161341	72151711	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_72152123_72152218_72152324_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161230
transcript_10095.known	chr10	+	3410	2	FSM	ENSMUSG00000005682.10	ENSMUST00000219801.2	3410	2	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	128139244	128143277	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_128139341_128139963
transcript_100952.known	chrX	-	1474	8	FSM	ENSMUSG00000058328.14	ENSMUST00000114521.8	1474	8	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_7	121.461844180947	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGTTCAGCACATATG	NA	False	NA	NA	False	ATTAAA	-14	NA	72161308	72151240	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72152123_72152218_72152324_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161284
transcript_100953.known	chrX	-	1650	9	FSM	ENSMUSG00000058328.14	ENSMUST00000078574.12	1650	9	0	0	0	0	multi-exon	TRUE	canonical	3	269	junction_2	77.2438306598009	501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGTTCAGCACATATG	NA	False	NA	NA	False	ATTAAA	-14	NA	72161308	72151240	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72152123_72152218_72152324_72153534_72153634_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161207
transcript_100954.known	chrX	+	2864	5	FSM	ENSMUSG00000067771.10	ENSMUST00000088459.9	2864	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	16.161296358894	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAGTGTAGATGTCTAAGA	NA	False	NA	NA	False	AATAAA	-18	NA	72160652	72172868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_72160742_72166673_72166742_72167034_72167132_72168423_72168590_72170424
transcript_100958.nnic	chrX	+	1138	9	NNC	ENSMUSG00000072479.11	novel	1652	9	NA	NA	-36	306	at_least_one_novel_splicesite	TRUE	canonical	3	104	junction_1	165.884749148317	273	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72192365	72202005	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_72192426_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72200075_72200175_72201393_72201499_72201594
transcript_100959.nnic	chrX	+	1184	9	NNC	ENSMUSG00000072479.11	novel	1652	9	NA	NA	-28	306	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_1	176.825434751339	232	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72192373	72202005	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_72192480_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72200075_72200175_72201393_72201499_72201594
transcript_100964.nnic	chrX	+	1039	8	NNC	ENSMUSG00000072479.11	novel	1652	9	NA	NA	-36	306	at_least_one_novel_splicesite	FALSE	canonical	3	104	junction_1	175.455093388361	181	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72192365	72202005	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_72192426_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72201393_72201499_72201594
transcript_100965.nnic	chrX	+	1085	8	NNC	ENSMUSG00000072479.11	novel	1652	9	NA	NA	-28	306	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_1	187.636209029002	199	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72192373	72202005	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_72192480_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72201393_72201499_72201594
transcript_100967.known	chrX	-	2862	5	FSM	ENSMUSG00000071745.2	ENSMUST00000080324.4	2862	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	17.5499287747842	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGACAGTGTAGATGTCTAA	NA	False	NA	NA	False	AATAAA	-16	NA	72193056	72180837	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72183280_72185114_72185281_72186572_72186670_72186962_72187031_72192967
transcript_100968.known	chrX	+	1652	9	FSM	ENSMUSG00000072479.11	ENSMUST00000114518.9	1652	9	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_8	146.338167868127	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGTTCAGCACATATG	NA	False	NA	NA	False	ATTAAA	-14	NA	72192401	72202478	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_72192503_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72200075_72200175_72201393_72201499_72201594
transcript_100969.nnic	chrX	-	924	2	NNC	ENSMUSG00000079566.2	novel	1015	2	NA	NA	300	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGAAGTTGTAATTTCTAG	NA	False	NA	NA	False	AATAAA	-22	NA	72220295	72218899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_72219726_72220197
transcript_100970.known	chrX	-	1015	2	FSM	ENSMUSG00000079566.2	ENSMUST00000114517.2	1015	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATAAAGTTGAAGTTGTA	NA	False	NA	NA	False	AATAAA	-14	NA	72220595	72218907	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72219726_72220398
transcript_100980.known	chrX	+	3780	7	FSM	ENSMUSG00000073125.11	ENSMUST00000137641.8	3780	7	0	0	0	0	multi-exon	FALSE	canonical	3	979	junction_3	266.969203384127	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	NA	False	AATAAA	-18	NA	72235812	72246536	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72241992_72243351_72243451_72245455_72245552_72245645
transcript_100981.known	chrX	+	1564	9	FSM	ENSMUSG00000073125.11	ENSMUST00000101486.5	1564	9	0	0	0	0	multi-exon	FALSE	canonical	3	836	junction_5	296.174779479955	2950	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTCAGACTTGTTGGCA	NA	False	NA	NA	False	AATAAA	-8	NA	72235827	72246526	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72239583_72240958_72241077_72241891_72241992_72243351_72243451_72245455_72245552_72245645
transcript_100982.known	chrX	+	2384	8	FSM	ENSMUSG00000073125.11	ENSMUST00000138149.2	2384	8	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_2	448.163508791429	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTTGGCATGAGTCATT	NA	False	NA	NA	False	AATAAA	-17	NA	72235816	72246535	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_72235856_72237775_72237898_72238605_72238676_72239547_72239583_72240958_72241992_72243351_72243451_72245455_72245552_72245645
transcript_10099.known	chr10	+	763	6	FSM	ENSMUSG00000025381.4	ENSMUST00000026446.4	763	6	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	1015.96602305392	1555	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAACTGTGTTGTCTTTTTT	NA	False	NA	33	True	AATGAA	-29	NA	128158336	128163056	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_128158400_128159198_128159312_128159452_128159569_128161932_128162137_128162445_128162543_128162886
transcript_100991.known	chrX	+	1077	9	FSM	ENSMUSG00000067768.13	ENSMUST00000081827.4	1077	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	104.421546507414	591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	15	True	AATAAA	-15	NA	72258037	72266056	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_72258064_72258379_72258463_72258846_72258962_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
transcript_100997.known	chrX	+	1304	9	FSM	ENSMUSG00000067768.13	ENSMUST00000069103.11	1304	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	98.081519028816	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	18	True	AATAAA	-18	NA	72257954	72266059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_72258192_72258379_72258463_72258833_72258962_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
transcript_101006.known	chrX	+	1200	9	FSM	ENSMUSG00000067768.13	ENSMUST00000069077.10	1200	9	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	80.9281123899477	999	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	18	True	AATAAA	-18	NA	72257954	72266059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_72258088_72258379_72258463_72258833_72258962_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
transcript_101011.nnic	chrX	-	1277	9	NNC	ENSMUSG00000031362.18	novel	1220	9	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_8	110.415125775412	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	-8	True	AATAAA	-15	NA	72286769	72277684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_72278057_72278174_72278271_72280979_72281079_72282267_72282368_72283213_72283332_72284921_72284991_72285673_72285802_72286183_72286267_72286557
transcript_101012.known	chrX	-	1104	9	FSM	ENSMUSG00000031362.18	ENSMUST00000114531.8	1104	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_7	121.935433734415	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	-8	True	AATAAA	-15	NA	72286633	72277684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72278057_72278174_72278271_72280979_72281079_72282267_72282368_72283213_72283332_72284921_72284991_72285673_72285789_72286183_72286267_72286581
transcript_101013.nnic	chrX	-	1241	9	NNC	ENSMUSG00000031362.18	novel	1220	9	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_7	125.741736806042	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	-8	True	AATAAA	-15	NA	72286769	72277684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_72278057_72278174_72278271_72280979_72281079_72282267_72282368_72283213_72283332_72284921_72284991_72285673_72285802_72286219_72286267_72286557
transcript_101014.known	chrX	-	1500	9	FSM	ENSMUSG00000031362.18	ENSMUST00000068551.9	1500	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	125.099897581893	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCAGCTTTGAATGTCTC	NA	False	NA	NA	False	NA	NA	NA	72286674	72277293	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72278057_72278174_72278271_72280979_72281079_72282267_72282368_72283213_72283332_72284921_72284991_72285673_72285789_72286219_72286267_72286581
transcript_101046.known	chrX	-	1584	9	FSM	ENSMUSG00000058147.2	ENSMUST00000080839.2	1584	9	0	0	0	0	multi-exon	FALSE	canonical	3	686	junction_5	383.166718772651	3986	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	-8	True	AATAAA	-16	NA	72308996	72298145	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72299035_72299128_72299225_72301241_72301341_72302698_72302799_72303613_72303732_72305110_72305146_72306028_72306099_72306921_72307059_72308956
transcript_101069.known	chrX	-	1656	9	FSM	ENSMUSG00000067764.12	ENSMUST00000114503.9	1656	9	0	0	0	0	multi-exon	TRUE	canonical	3	126	junction_7	127.059963698248	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGTTCAGCACATATG	NA	False	NA	NA	False	ATTAAA	-14	NA	72336582	72326501	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72327390_72327485_72327591_72328811_72328911_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015_72334153_72336481
transcript_101071.nnic	chrX	-	1224	9	NNC	ENSMUSG00000067764.12	novel	1656	9	NA	NA	-118	-473	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_8	149.667913645511	306	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72336700	72326974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_72327390_72327485_72327591_72328811_72328911_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015_72334153_72336558
transcript_101083.nnic	chrX	-	1106	8	NIC	ENSMUSG00000067764.12	novel	1656	9	NA	NA	-22	-473	combination_of_known_splicesites	FALSE	canonical	3	126	junction_6	133.486986295309	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72336604	72326974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_72327390_72327485_72327591_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015_72334153_72336481
transcript_101084.nnic	chrX	-	1090	8	NNC	ENSMUSG00000067764.12	novel	1656	9	NA	NA	-29	-473	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_7	166.663782287966	175	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72336611	72326974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_72327390_72327485_72327591_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015_72334153_72336504
transcript_101085.nnic	chrX	-	1043	8	NNC	ENSMUSG00000067764.12	novel	1656	9	NA	NA	-36	-473	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_7	157.992508218147	167	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72336618	72326974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_72327390_72327485_72327591_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015_72334153_72336558
transcript_101091.known	chrX	-	540	6	FSM	ENSMUSG00000067764.12	ENSMUST00000088450.4	540	6	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_5	141.168835087635	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGAACTTGAGAACAGAGC	NA	False	NA	NA	False	NA	NA	NA	72334121	72328802	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72328911_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015
transcript_101092.known	chrX	+	6376	6	FSM	ENSMUSG00000031365.14	ENSMUST00000033731.4	6376	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	13.9226434271657	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTCTTTCTTGACTCATT	NA	False	NA	12	True	NA	NA	NA	72386226	72402686	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_72386358_72388442_72388519_72394874_72394967_72395414_72395530_72396441_72396544_72396826
transcript_101093.known	chrX	+	6284	5	FSM	ENSMUSG00000031365.14	ENSMUST00000114499.8	6284	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	9.63068014212911	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTCTTTCTTGACTCATT	NA	False	NA	12	True	NA	NA	NA	72386226	72402686	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_72386358_72388442_72388519_72395414_72395530_72396441_72396544_72396826
transcript_101096.known	chrX	-	1017	2	FSM	ENSMUSG00000031372.8	ENSMUST00000033738.8	1017	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTGGCCAGACTTCTCT	NA	False	NA	NA	False	AATAAA	-25	NA	72478950	72477310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72478280_72478902
transcript_101105.known	chrX	-	1380	10	FSM	ENSMUSG00000031371.15	ENSMUST00000033737.15	1380	10	0	0	0	0	multi-exon	FALSE	canonical	3	498	junction_3	42.8281089190294	2204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTGCCTTCGGACTACT	NA	False	NA	-12	True	AATAAA	-17	NA	72502650	72480920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72481172_72489415_72489531_72490533_72490744_72491565_72491663_72491797_72491957_72492416_72492509_72496604_72496667_72498472_72498541_72501579_72501696_72502440
transcript_101115.known	chrX	-	1032	7	FSM	ENSMUSG00000031371.15	ENSMUST00000077243.5	1032	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_3	203.601462557506	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTGCCTTCGGACTACT	NA	False	NA	-12	True	AATAAA	-17	NA	72502650	72480920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72481172_72489415_72489531_72490533_72490744_72496604_72496667_72498472_72498541_72501579_72501696_72502440
transcript_101122.known	chrX	+	2419	8	FSM	ENSMUSG00000031375.18	ENSMUST00000033741.15	2419	8	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	0.451753951452626	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTCTGTGTGCCAGTTCT	NA	False	NA	NA	False	ATTAAA	-17	NA	72527207	72539539	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_72527369_72534384_72534637_72534923_72535037_72535553_72535768_72536328_72536440_72536568_72536663_72536805_72536945_72538204
transcript_101124.known	chrX	+	2722	4	FSM	ENSMUSG00000031383.9	ENSMUST00000019701.9	2722	4	0	0	0	0	multi-exon	TRUE	canonical	3	583	junction_1	9.62635271879577	1050	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGAGGTTGTTGCTTCTT	NA	False	NA	28	True	AATAAA	-22	NA	72683024	72687120	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_72683248_72683798_72684411_72684952_72685409_72685689
transcript_101128.nnic	chrX	-	1486	12	NNC	ENSMUSG00000002012.14	novel	1532	12	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	20.4110648974504	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTGGTGCTGAACTGGG	NA	False	NA	-2	True	AATAAA	-15	NA	72703729	72699599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_72699940_72700275_72700421_72700517_72700606_72700676_72700756_72700836_72700950_72701043_72701120_72701325_72701450_72701624_72701764_72701859_72701935_72702293_72702426_72702785_72702856_72703624
transcript_10113.known	chr10	+	1383	6	FSM	ENSMUSG00000025381.4	ENSMUST00000219037.2	1383	6	0	0	0	0	multi-exon	FALSE	canonical	3	1395	junction_2	667.271938567778	8793	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATTTATTCAGTGTGTAC	NA	False	NA	NA	False	NA	NA	NA	128158327	128163422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_128158645_128159198_128159312_128159452_128159569_128161932_128162137_128162445_128162543_128162886
transcript_101130.known	chrX	-	1492	12	FSM	ENSMUSG00000002012.14	ENSMUST00000114473.8	1492	12	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_11	19.8644164606543	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTGGTGCTGAACTGGG	NA	False	NA	-2	True	AATAAA	-15	NA	72703330	72699599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72699993_72700275_72700421_72700517_72700606_72700676_72700756_72700836_72700950_72701043_72701120_72701325_72701450_72701624_72701764_72701859_72701935_72702293_72702426_72702785_72702856_72703272
transcript_101131.known	chrX	-	1536	12	FSM	ENSMUSG00000002012.14	ENSMUST00000002087.14	1536	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_11	21.8518679346047	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTGGTGCTGAACTGGG	NA	False	NA	-2	True	AATAAA	-15	NA	72703434	72699599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72699993_72700275_72700421_72700517_72700606_72700676_72700756_72700836_72700950_72701043_72701120_72701325_72701450_72701624_72701764_72701859_72701935_72702293_72702426_72702785_72702856_72703332
transcript_101132.known	chrX	-	1532	12	FSM	ENSMUSG00000002012.14	ENSMUST00000114472.8	1532	12	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_11	13.5176652099123	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTCTGGTGCTGAACTGG	NA	False	NA	-3	True	AATAAA	-14	NA	72703723	72699600	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72699993_72700275_72700421_72700517_72700606_72700676_72700756_72700836_72700950_72701043_72701120_72701325_72701450_72701624_72701764_72701859_72701935_72702293_72702426_72702785_72702856_72703624
transcript_101136.nnic	chrX	-	1468	11	NIC	ENSMUSG00000002012.14	novel	1532	12	NA	NA	-5	0	combination_of_known_splicesites	TRUE	canonical	2	5	junction_10	21.6148097377701	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTGGTGCTGAACTGGG	NA	False	NA	-2	True	AATAAA	-15	NA	72703728	72699599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_72699993_72700275_72700421_72700517_72700606_72700676_72700756_72700836_72700950_72701043_72701120_72701325_72701450_72701624_72701764_72701859_72701935_72702293_72702426_72703624
transcript_101158.known	chrX	-	1219	8	FSM	ENSMUSG00000002015.6	ENSMUST00000002091.6	1219	8	0	0	0	0	multi-exon	FALSE	canonical	3	2403	junction_7	231.225131040053	12097	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTTGTGTCTAACTGAG	NA	False	NA	-13	True	AATAAA	-17	NA	72759781	72729783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72730202_72731442_72731544_72732265_72732387_72733152_72733289_72750602_72750751_72756050_72756152_72758398_72758535_72759723
transcript_101159.known	chrX	+	3648	10	FSM	ENSMUSG00000031378.15	ENSMUST00000002084.14	3648	10	0	0	0	0	multi-exon	TRUE	canonical	3	38	junction_7	8.3901765016235	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCCTCCTGAACTTGGT	NA	False	NA	18	True	AGTAAA	-19	NA	72760202	72782140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_72761537_72764519_72764701_72772589_72772733_72772814_72772984_72774399_72774495_72777614_72777761_72778067_72778214_72780395_72780481_72780708_72780835_72780917
transcript_101160.known	chrX	+	1981	15	FSM	ENSMUSG00000002007.6	ENSMUST00000002081.6	1981	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.95831484749991	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCAGTGTCTTGGAGTAAG	NA	False	NA	NA	False	AATAAA	-14	NA	72818010	72822531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_72818113_72818189_72818321_72818498_72818608_72818709_72818798_72819083_72819172_72819625_72819733_72819803_72819970_72820066_72820093_72820575_72820706_72820793_72821034_72821114_72821216_72821529_72821638_72821710_72821781_72821859_72821953_72822109
transcript_101167.known	chrX	-	1331	13	FSM	ENSMUSG00000002010.18	ENSMUST00000052761.9	1331	13	0	0	0	0	multi-exon	TRUE	canonical	2	205	junction_10	445.162891535222	5827	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830503	72822568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72825903_72825916_72826280_72826323_72830380
transcript_101168.known	chrX	-	2080	10	FSM	ENSMUSG00000002010.18	ENSMUST00000156299.8	2080	10	0	0	0	0	multi-exon	FALSE	canonical	3	1120	junction_7	119.009596044257	647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830503	72822568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824637_72824757_72824819_72825282_72825396_72825611_72826323_72830380
transcript_10118.known	chr10	+	2926	11	FSM	ENSMUSG00000005683.9	ENSMUST00000005826.9	2926	11	0	0	0	0	multi-exon	TRUE	canonical	3	1246	junction_9	132.722869167299	2222	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAGCTTGCTCTTACGTA	NA	False	NA	18	True	AATAAA	-18	NA	128173602	128198348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
transcript_10119.known	chr10	-	1307	5	FSM	ENSMUSG00000039914.7	ENSMUST00000220027.2	1307	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	35.9400542570542	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTGTCATTTTTTGAG	7245	False	NA	-3	True	AATAAA	-12	NA	128204560	128198968	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128199661_128200273_128200376_128200891_128201085_128203875_128204023_128204387
transcript_101194.known	chrX	+	765	6	FSM	ENSMUSG00000002014.13	ENSMUST00000002090.3	765	6	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_1	441.755135793575	5419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACGGGGCTCCTGTGTCT	5466	False	NA	48	True	AATAAA	-30	NA	72830667	72834432	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_72830913_72832443_72832560_72833405_72833481_72833636_72833727_72833964_72834031_72834259
transcript_101195.known	chrX	+	2568	3	FSM	ENSMUSG00000002014.13	ENSMUST00000141721.2	2568	3	0	0	0	0	multi-exon	FALSE	canonical	3	1319	junction_2	168.5	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACGGGGCTCCTGTGTCT	5588	False	NA	48	True	AATAAA	-30	NA	72830789	72834432	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_72832560_72833405_72834031_72834259
transcript_101196.known	chrX	+	747	4	FSM	ENSMUSG00000002014.13	ENSMUST00000129239.2	747	4	0	0	0	0	multi-exon	FALSE	canonical	3	1491	junction_3	71.4438396380137	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGGCTCCTGTGTCTATGG	7248	False	NA	52	True	AATAAA	-34	NA	72832449	72834436	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_72832560_72833405_72833481_72833636_72833727_72833964
transcript_101197.known	chrX	-	3353	22	FSM	ENSMUSG00000031389.18	ENSMUST00000064376.13	3353	22	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_18	9.77989051592099	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACATAGGTATGTCTATG	NA	False	NA	NA	False	AATACA	-28	NA	72954936	72937957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72938570_72939553_72939654_72939999_72940093_72940419_72940604_72940686_72940761_72940834_72941069_72941158_72941265_72941359_72941495_72941574_72941653_72941737_72941799_72943146_72943250_72943450_72943479_72943704_72943790_72943883_72944076_72944240_72944343_72947853_72948076_72948185_72948315_72949256_72949470_72949762_72949826_72950034_72950198_72950274_72950483_72954768
transcript_1012.known	chr1	-	1163	7	FSM	ENSMUSG00000043716.14	ENSMUST00000058437.14	1163	7	0	0	0	0	multi-exon	FALSE	canonical	3	5309	junction_1	773.772953348289	244716	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGGAGTCTTTGTTGG	NA	False	NA	-5	True	AATAAA	-25	NA	16174886	16171518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391_16173559_16173733_16173909_16174588
transcript_10120.known	chr10	-	1434	5	FSM	ENSMUSG00000039914.7	ENSMUST00000220227.2	1434	5	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_4	16.3248277173145	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTGTCATTTTTTGAG	6939	False	NA	-3	True	AATAAA	-12	NA	128204866	128198968	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128199661_128200273_128200376_128200891_128201085_128203875_128204023_128204566
transcript_101207.known	chrX	-	834	7	FSM	ENSMUSG00000031388.15	ENSMUST00000114391.10	834	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	477.944789931036	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGGAAATTTGTGAATGT	NA	False	NA	-24	True	AATAAA	-15	NA	72965490	72960501	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72960802_72961448_72961534_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
transcript_101208.known	chrX	-	979	8	FSM	ENSMUSG00000031388.15	ENSMUST00000114387.8	979	8	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	343.561063104701	3389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGAATGTGCATAGTGG	NA	False	NA	-15	True	AATAAA	-24	NA	72965494	72960492	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72960889_72961448_72961534_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
transcript_101209.known	chrX	-	3123	22	FSM	ENSMUSG00000031389.18	ENSMUST00000130976.8	3123	22	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	11.1118820594215	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTGTAATAGCCTGTG	NA	False	NA	NA	False	CATAAA	-17	NA	72954877	72938137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72938570_72939553_72939654_72939990_72940093_72940419_72940604_72940686_72940761_72940834_72941069_72941158_72941265_72941359_72941495_72941574_72941653_72941737_72941799_72943146_72943250_72943450_72943479_72943704_72943790_72943883_72944076_72944240_72944343_72947853_72948076_72948185_72948315_72949256_72949470_72949762_72949826_72950034_72950198_72950274_72950483_72954768
transcript_10121.nic	chr10	-	1355	5	NIC	ENSMUSG00000039914.7	novel	1307	5	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_3	43.0058135604944	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTGTCATTTTTTGAG	7227	False	NA	-3	True	AATAAA	-12	NA	128204578	128198968	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_-_128199661_128200273_128200376_128200891_128201115_128203875_128204023_128204387
transcript_10122.known	chr10	-	1421	5	FSM	ENSMUSG00000039914.7	ENSMUST00000043211.7	1421	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	37.9629753839185	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTGTCATTTTTTGAG	6982	False	NA	-3	True	AATAAA	-12	NA	128204823	128198968	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128199661_128200273_128200376_128200891_128201115_128203875_128204023_128204566
transcript_101225.known	chrX	-	1318	11	FSM	ENSMUSG00000031387.15	ENSMUST00000114379.8	1318	11	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_8	509.144390129166	3474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGCGCGCCTCTG	NA	False	NA	-2	True	AATAAA	-18	NA	72974398	72965726	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72973834_72973869_72974013_72974124_72974319
transcript_101226.known	chrX	-	416	3	FSM	ENSMUSG00000031387.15	ENSMUST00000135213.8	416	3	0	0	0	0	multi-exon	FALSE	canonical	3	1965	junction_1	27	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTTGTGTGCGCGCCTCT	NA	False	NA	-3	True	AATAAA	-17	NA	72970007	72965727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72965870_72965956_72966045_72969821
transcript_101227.known	chrX	-	1310	11	FSM	ENSMUSG00000031387.15	ENSMUST00000155597.2	1310	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	617.352095647208	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGACCCTGTTCCACATG	NA	False	NA	-20	True	NA	NA	NA	72974362	72965744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72973792_72973869_72974013_72974124_72974315
transcript_101228.known	chrX	-	2125	7	FSM	ENSMUSG00000031387.15	ENSMUST00000135711.8	2125	7	0	0	0	0	multi-exon	FALSE	canonical	3	1962	junction_4	102.832252830628	873	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCTTGTGTGCGCGCCTC	NA	False	NA	-4	True	AATAAA	-16	NA	72974423	72965728	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72974124_72974319
transcript_101229.known	chrX	-	1407	4	FSM	ENSMUSG00000031387.15	ENSMUST00000146371.8	1407	4	0	0	0	0	multi-exon	FALSE	canonical	3	2042	junction_3	97.9841256984461	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCATCATTGAGTTTGGGG	NA	False	NA	NA	False	NA	NA	NA	72974347	72971844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_72971967_72972721_72973869_72974013_72974124_72974319
transcript_101233.known	chrX	-	10538	4	FSM	ENSMUSG00000031393.17	ENSMUST00000100750.10	10538	4	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_3	52.083266666624	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAAGGTCTGGGCTTTCAT	NA	False	NA	NA	False	GATAAA	-18	NA	73129275	73070197	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_73080101_73080587_73080939_73123514_73123639_73129115
transcript_101234.known	chrX	-	1739	3	FSM	ENSMUSG00000031393.17	ENSMUST00000033770.13	1739	3	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_2	51.5	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTTAGAGTTTCGTGGC	NA	False	NA	NA	False	AATAAA	-22	NA	73129296	73078893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_73080101_73080587_73080939_73129115
transcript_101236.known	chrX	+	1214	1	FSM	ENSMUSG00000084131.2	ENSMUST00000117131.2	1214	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	350	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAGGACCACTTTGTGCA	NA	False	NA	-53	True	AAGAAA	-31	NA	73214258	73215472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_73214300_73215500
transcript_101237.known	chrX	+	2473	13	FSM	ENSMUSG00000031397.12	ENSMUST00000010127.12	2473	13	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_9	3.8151743807532	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTTATGCAGTTTGTGCC	6476	False	NA	6	True	AATAAA	-18	NA	73220864	73252106	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_73221030_73225389_73225505_73234827_73234926_73237124_73237317_73237399_73237528_73240589_73240784_73241245_73241411_73244203_73244361_73246136_73246268_73248479_73248564_73249479_73249577_73249950_73250071_73251279
transcript_101240.known	chrX	+	1595	6	FSM	ENSMUSG00000001964.15	ENSMUST00000002029.13	1595	6	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_2	18.1592951405059	1510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTATGTTTTGGTTGTGGG	NA	False	NA	NA	False	NA	NA	NA	73298292	73301493	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_73298640_73298813_73298922_73299058_73299137_73299348_73299483_73300483_73300531_73300612
transcript_101241.known	chrX	+	1338	6	FSM	ENSMUSG00000001964.15	ENSMUST00000088313.5	1338	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_5	106.854293315711	3187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAAGG	NA	False	NA	NA	False	AATAAA	-13	NA	73298435	73305154	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_73298640_73298813_73298922_73299058_73299137_73299348_73299483_73300483_73300531_73304387
transcript_101249.known	chrX	+	614	3	FSM	ENSMUSG00000001964.15	ENSMUST00000129516.2	614	3	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_2	26.5	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGAGGCCAGTTAAGGGG	NA	False	NA	NA	False	NA	NA	NA	73298366	73299291	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_73298640_73298813_73298922_73299058
transcript_101273.known	chrX	+	855	6	FSM	ENSMUSG00000008682.14	ENSMUST00000074085.12	855	6	0	0	0	0	multi-exon	FALSE	canonical	3	7516	junction_1	832.521615335001	10905	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTGTTTCTGATTCTT	NA	False	NA	12	True	AATAAA	-22	NA	73314465	73316741	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316277_73316441_73316520
transcript_101274.known	chrX	+	523	5	FSM	ENSMUSG00000008682.14	ENSMUST00000135690.2	523	5	0	0	0	0	multi-exon	FALSE	canonical	2	85	junction_4	3846.15960244762	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACCCTACCAAATCGTTC	NA	False	NA	-38	True	NA	NA	NA	73314584	73316691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316520
transcript_1013.known	chr1	-	1597	5	FSM	ENSMUSG00000043716.14	ENSMUST00000141217.2	1597	5	0	0	0	0	multi-exon	FALSE	canonical	3	5452	junction_4	739.819403638483	1273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATTGAAATGTGTCGGA	NA	False	NA	-16	True	AATAAA	-14	NA	16174626	16171529	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_16172161_16172713_16172824_16172915_16173559_16173733_16173909_16174588
transcript_10130.known	chr10	-	612	7	FSM	ENSMUSG00000025374.14	ENSMUST00000172348.8	612	7	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_6	118.544881327238	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGAGCACCCAGCTAGGT	NA	False	NA	NA	False	NA	NA	NA	128245501	128237768	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128237793_128244022_128244090_128244184_128244267_128244403_128244476_128244566_128244706_128245115_128245218_128245375
transcript_101303.known	chrX	-	1625	8	FSM	ENSMUSG00000019088.15	ENSMUST00000239458.2	1625	8	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	3.01018678652935	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGTATGCTTAATTCAAT	NA	False	NA	NA	False	AATAAA	-17	NA	73325342	73316822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_73317298_73317383_73317633_73317711_73317825_73317973_73318075_73320084_73320163_73320251_73320341_73320644_73320949_73325126
transcript_10131.known	chr10	-	1130	7	FSM	ENSMUSG00000025374.14	ENSMUST00000026439.14	1130	7	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_1	32.5444140965679	1662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGAGTCTGTGTTTCTC	NA	False	NA	-7	True	AATAAA	-13	NA	128245743	128237263	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128237793_128244022_128244090_128244184_128244267_128244403_128244476_128244566_128244706_128245115_128245218_128245604
transcript_101318.known	chrX	+	1786	10	FSM	ENSMUSG00000009995.18	ENSMUST00000114180.11	1786	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_6	91.4165611600053	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCTCTGTCTTCTGTGTA	NA	False	NA	7	True	AATAAA	-20	NA	73326367	73333754	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73331826_73332053_73332120_73332267_73332321_73332710_73332789_73332904
transcript_10132.known	chr10	-	614	7	FSM	ENSMUSG00000025374.14	ENSMUST00000164664.8	614	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	121.06942452806	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACGGAAATGGACTGAGCAC	NA	False	NA	NA	False	NA	NA	NA	128246420	128237778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128237793_128244022_128244090_128244184_128244267_128244403_128244476_128244566_128244706_128245115_128245218_128246282
transcript_101325.known	chrX	+	2189	10	FSM	ENSMUSG00000019087.14	ENSMUST00000019231.12	2189	10	0	0	0	0	multi-exon	TRUE	canonical	3	647	junction_4	26.5934179176579	5145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACAGTAGATTTTTTTTTC	NA	False	NA	46	True	NA	NA	NA	73340702	73348327	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_73340928_73341228_73341356_73343855_73343931_73344183_73344378_73344929_73344971_73345541_73345628_73345967_73346207_73346827_73346876_73346963_73347193_73347402
transcript_101326.known	chrX	+	2157	10	FSM	ENSMUSG00000019087.14	ENSMUST00000114171.10	2157	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	217.728565868289	2862	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGGGCTTCGTGTCACT	NA	False	NA	14	True	AATAAA	-19	NA	73340768	73348295	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_73340928_73341228_73341356_73343855_73343931_73344183_73344378_73344929_73344971_73345541_73345628_73345967_73346207_73346827_73346876_73346963_73347193_73347336
transcript_101328.known	chrX	+	2666	11	FSM	ENSMUSG00000015291.11	ENSMUST00000015435.11	2666	11	0	0	0	0	multi-exon	FALSE	canonical	3	553	junction_5	84.5884152824723	810	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTCTTTAGGTTCTC	5948	False	NA	15	True	AATAAA	-16	NA	73348603	73355468	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351477_73351735_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
transcript_101330.known	chrX	+	1383	13	FSM	ENSMUSG00000001962.9	ENSMUST00000114160.2	1383	13	0	0	0	0	multi-exon	FALSE	canonical	3	663	junction_3	69.864700592566	3219	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATAAGAACCTGCGCTTTA	199	False	NA	NA	False	AATAAA	-33	NA	73356638	73363755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_73356932_73358282_73358368_73358469_73358570_73359032_73359179_73361035_73361113_73361242_73361310_73361747_73361810_73361973_73362051_73362420_73362476_73362655_73362705_73362796_73362868_73362997_73363109_73363565
transcript_101331.known	chrX	-	761	3	FSM	ENSMUSG00000015289.5	ENSMUST00000015433.4	761	3	0	0	0	0	multi-exon	FALSE	canonical	3	1433	junction_2	31	13979	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCAGCCTCTAAATTTTC	4493	False	NA	-18	True	AATAAA	-30	NA	73397224	73395766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_73396105_73396479_73396609_73396930
transcript_101344.known	chrX	-	746	3	FSM	ENSMUSG00000015289.5	ENSMUST00000114152.2	746	3	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	662	670	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCAGCCTCTAAATTTT	4536	False	NA	-19	True	AATAAA	-29	NA	73397181	73395767	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_73396105_73396450_73396609_73396930
transcript_101346.known	chrX	-	2220	3	FSM	ENSMUSG00000015290.16	ENSMUST00000126117.2	2220	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	782.5	257	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACTGAATCCTGTGTAAT	NA	False	NA	-7	True	AATAAA	-19	NA	73412164	73409324	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_73411193_73411306_73411516_73412021
transcript_101347.known	chrX	-	2023	3	FSM	ENSMUSG00000032806.14	ENSMUST00000037967.6	2023	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	8.5	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGCTCGGGTCCCTTCCA	NA	False	NA	NA	False	AATAAA	-21	NA	73416955	73412822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_73414618_73416219_73416289_73416796
transcript_101348.known	chrX	-	1910	2	FSM	ENSMUSG00000032806.14	ENSMUST00000073067.11	1910	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGCTCGGGTCCCTTCCA	NA	False	NA	NA	False	AATAAA	-21	NA	73416911	73412822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_73414618_73416796
transcript_101351.nic	chrX	-	1535	10	NIC	ENSMUSG00000031399.16	novel	1899	9	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_9	35.9828491381487	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAGAGTCAAGGGTGGTG	NA	False	NA	-6	True	AATAAA	-43	NA	73436865	73428324	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_73429042_73430027_73430155_73430237_73430323_73430639_73430691_73431043_73431103_73431233_73431358_73434079_73434104_73434596_73434711_73436280_73436354_73436704
transcript_101352.known	chrX	-	1899	9	FSM	ENSMUSG00000031399.16	ENSMUST00000114143.10	1899	9	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	16.2322017915007	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAGAGTCAAGGGTGGTG	NA	False	NA	-6	True	AATAAA	-43	NA	73436878	73428324	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_73429042_73430027_73430155_73430237_73430323_73430639_73430691_73431043_73431103_73431233_73431358_73434079_73434104_73434596_73434711_73436280
transcript_101356.known	chrX	-	814	9	FSM	ENSMUSG00000031399.16	ENSMUST00000122894.8	814	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_8	38.1174172787192	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACAGCAGAGAACCTGGCA	NA	False	NA	NA	False	NA	NA	NA	73436861	73430027	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_73430155_73430237_73430323_73430639_73430691_73431043_73431103_73431233_73431358_73434079_73434104_73434596_73434711_73436280_73436354_73436704
transcript_101359.known	chrX	-	507	6	FSM	ENSMUSG00000031399.16	ENSMUST00000114138.8	507	6	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_3	12.8156154748806	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGATTCTGTTTTGTGAC	NA	False	NA	NA	False	AATACA	-18	NA	73436293	73430517	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_73430691_73431043_73431103_73431233_73431358_73434079_73434104_73434596_73434711_73436280
transcript_101361.known	chrX	-	2652	13	FSM	ENSMUSG00000031400.11	ENSMUST00000004327.11	2652	13	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_8	19.8990507869653	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTCTCCTTGTTCTTTTC	NA	False	NA	-6	True	ATTAAA	-18	NA	73472800	73453088	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_73453904_73454002_73454096_73454188_73454266_73454362_73454599_73454863_73455051_73455170_73455265_73455571_73455698_73455924_73456084_73457469_73457688_73458513_73458623_73458721_73458760_73471657_73471786_73472428
transcript_101367.known	chrX	+	4530	10	FSM	ENSMUSG00000004221.17	ENSMUST00000064407.10	4530	10	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	31.82591536608	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCATGCACTCTGTCCTCC	NA	False	NA	1	True	AATAAA	-15	NA	73473309	73495126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_73473428_73476410_73476613_73477408_73477621_73480772_73480889_73482512_73482666_73483480_73483557_73486950_73487095_73487377_73487521_73491464_73491527_73491822
transcript_101372.known	chrX	-	580	5	FSM	ENSMUSG00000031400.11	ENSMUST00000135894.2	580	5	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_4	6.68954408012983	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAGGTCAAGCCAGTCTA	NA	False	NA	NA	False	NA	NA	NA	73472455	73457409	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_73457688_73458513_73458623_73458721_73458760_73471657_73471786_73472428
transcript_10138.known	chr10	-	1371	6	FSM	ENSMUSG00000025374.14	ENSMUST00000164199.8	1371	6	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_1	33.0732520324204	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGAGTCTGTGTTTCTC	NA	False	NA	-7	True	AATAAA	-13	NA	128245597	128237263	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128237793_128244022_128244090_128244184_128244267_128244403_128244476_128244566_128244706_128245115
transcript_10139.known	chr10	+	3144	7	FSM	ENSMUSG00000025373.15	ENSMUST00000096386.13	3144	7	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_5	11.6535640709422	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTCTTAGTCACCCCCCT	315	False	NA	NA	False	AATAAA	-17	NA	128247614	128276207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_128247695_128250987_128251171_128264459_128264573_128271181_128271454_128272336_128272473_128273176_128273281_128273951
transcript_101390.known	chrX	+	776	3	FSM	ENSMUSG00000079532.2	ENSMUST00000114117.2	776	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	2.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAAATAAAAAATAGCAAAT	NA	False	NA	NA	False	TTTAAA	-11	NA	73784532	73785794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_73784886_73785195_73785325_73785500
transcript_101395.known	chrX	+	631	3	FSM	ENSMUSG00000083981.5	ENSMUST00000118897.2	631	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGTTACCAGATACAAGAA	NA	False	NA	NA	False	NA	NA	NA	74002136	74003253	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_74002494_74002803_74002933_74003108
transcript_101396.known	chrX	-	2153	10	FSM	ENSMUSG00000032750.14	ENSMUST00000037374.11	2153	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.5475986974649	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGTTTCTCACAAGTTTACA	NA	False	NA	NA	False	NA	NA	NA	74128511	74032126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_74032443_74033659_74033777_74043570_74043707_74045416_74045499_74047929_74048138_74048921_74048978_74068383_74068863_74069594_74069812_74076776_74077081_74128273
transcript_101397.known	chrX	-	750	3	FSM	ENSMUSG00000032750.14	ENSMUST00000127024.2	750	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAAGTTCAATGTTTTTG	2179	False	NA	NA	False	NA	NA	NA	74012731	74011387	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_74011592_74011767_74011897_74012314
transcript_1014.known	chr1	-	838	6	FSM	ENSMUSG00000043716.14	ENSMUST00000149566.2	838	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	2771.11529893651	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTGGCAACAGGGAAGACC	NA	False	NA	NA	False	AAAAAG	-27	NA	16174451	16172003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_16172161_16172713_16172824_16172915_16173054_16173391_16173559_16173733_16173909_16174360
transcript_101425.known	chrX	-	2525	12	FSM	ENSMUSG00000031402.13	ENSMUST00000033775.9	2525	12	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_6	19.4626151487859	1214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGCCAGTCCAAGATTAT	NA	False	NA	NA	False	AATAAA	-17	NA	74174622	74153338	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_74154450_74155532_74155608_74155804_74156008_74157191_74157273_74157839_74157921_74159661_74159769_74161361_74161559_74165040_74165110_74167501_74167588_74168976_74169056_74169342_74169487_74174330
transcript_10143.known	chr10	+	4533	28	FSM	ENSMUSG00000025369.16	ENSMUST00000026433.9	4533	28	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_11	16.862633913377	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTTGTGGGTGCCTCTGT	2667	False	NA	46	True	TATAAA	-19	NA	128295162	128326041	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_128295307_128297220_128297341_128298849_128298936_128299560_128299643_128299735_128299829_128301025_128301096_128301305_128301376_128304663_128304740_128304874_128305007_128305110_128305227_128305533_128305659_128310069_128310130_128310240_128310279_128310551_128310683_128310861_128310934_128316218_128316333_128316719_128316874_128317951_128318072_128318159_128318223_128318552_128318812_128319043_128319206_128319459_128319525_128319947_128320084_128320165_128320333_128321428_128321564_128323123_128323506_128323802_128323887_128324764
transcript_10144.nic	chr10	+	1492	11	ISM	ENSMUSG00000025369.16	ENSMUST00000105235.10	4032	28	-83	19245	-10	1243	5prime_fragment	FALSE	canonical	3	89	junction_2	8.72696969170857	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTGTCTTGTGTTTTTA	2611	False	NA	NA	False	NA	NA	NA	128295106	128305980	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_128295307_128297220_128297341_128298849_128298936_128299560_128299643_128299735_128299829_128301025_128301096_128301305_128301376_128304663_128304740_128304874_128305007_128305110_128305227_128305533
transcript_10145.nnic	chr10	+	843	8	NNC	ENSMUSG00000025369.16	novel	4533	28	NA	NA	-10	-3140	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_7	35.9194109310363	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTTTGTGTGTGTGTGT	2611	False	NA	NA	False	NA	NA	NA	128295106	128301597	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_128295307_128297220_128297341_128298849_128298936_128299560_128299643_128299735_128299829_128301025_128301096_128301305_128301376_128301475
transcript_101450.known	chrX	+	2804	15	FSM	ENSMUSG00000031403.15	ENSMUST00000033776.15	2804	15	0	0	0	0	multi-exon	FALSE	canonical	3	1536	junction_9	499.509294922813	3454	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	34	True	ATTAAA	-21	NA	74139459	74153383	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
transcript_101451.known	chrX	-	1558	11	FSM	ENSMUSG00000031402.13	ENSMUST00000114091.8	1558	11	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_5	19.9120566491761	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATATATACTGATGTGAAG	NA	False	NA	NA	False	AATAAA	-15	NA	74174555	74155321	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_74155608_74155804_74156008_74157191_74157273_74157839_74157921_74159661_74159769_74161361_74161559_74165040_74165110_74167501_74167588_74168976_74169056_74169342_74169487_74174330
transcript_101452.known	chrX	+	783	1	FSM	ENSMUSG00000080254.5	ENSMUST00000116535.3	783	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAGGTTCAAGCAGAACAA	NA	False	NA	NA	False	NA	NA	NA	74187293	74188076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_74187300_74188100
transcript_101456.nic	chrX	-	1261	8	NIC	ENSMUSG00000031196.14	novel	7295	25	NA	NA	-43	4434	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	2.07019667802706	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCATTGTATAGTTACAAT	2951	False	NA	NA	False	AATACA	-15	NA	74425965	74377453	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_74377779_74378301_74378419_74381825_74381895_74397646_74397860_74409607_74409731_74411704_74411827_74423092_74423183_74425763
transcript_101458.known	chrX	+	2562	5	FSM	ENSMUSG00000031198.5	ENSMUST00000033541.5	2562	5	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_1	30.589009464185	2696	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGTCAGACTCCACTTGT	537	False	NA	NA	False	AATAAA	-21	NA	74426004	74440065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_74426058_74430707_74430859_74434389_74434466_74435245_74435378_74437915
transcript_10146.nic	chr10	+	943	7	ISM	ENSMUSG00000025369.16	ENSMUST00000105235.10	4032	28	-83	23628	-10	-3140	5prime_fragment	FALSE	canonical	3	89	junction_2	10.4788146064121	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTTTGTGTGTGTGTGT	2611	False	NA	NA	False	NA	NA	NA	128295106	128301597	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_128295307_128297220_128297341_128298849_128298936_128299560_128299643_128299735_128299829_128301025_128301096_128301305
transcript_101464.known	chrX	-	980	6	FSM	ENSMUSG00000031200.17	ENSMUST00000114081.2	980	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	14.0370937162933	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATCACCAAGGACTTGGT	NA	False	NA	NA	False	NA	NA	NA	74460194	74454382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_74454738_74454823_74454876_74454957_74455129_74455240_74455393_74459620_74459820_74460143
transcript_101470.known	chrX	-	1592	5	FSM	ENSMUSG00000031200.17	ENSMUST00000033542.11	1592	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	5.33853912601566	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTACAACATTTTACATAT	NA	False	NA	NA	False	NA	NA	NA	74460149	74454049	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_74454738_74454823_74454876_74454957_74455129_74455240_74455393_74459620
transcript_101473.nnic	chrX	-	813	4	NNC	ENSMUSG00000090110.9	novel	507	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_3	27.1825107171668	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGGTTTGTTACTAAAT	NA	False	NA	NA	False	AATAAA	-17	NA	74460190	74448451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_74448825_74453151_74453220_74459620_74459820_74460017
transcript_101474.known	chrX	-	507	4	FSM	ENSMUSG00000090110.9	ENSMUST00000149863.3	507	4	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	9.20144916122817	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTTATTTACTGTCCCT	NA	False	NA	NA	False	AGTAAA	-44	NA	74460190	74448631	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_74448825_74453151_74453220_74459620_74459820_74460143
transcript_101477.nnic	chrX	-	777	3	NNC	ENSMUSG00000090110.9	novel	992	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	39.5	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGGTTTGTTACTAAAT	NA	False	NA	NA	False	AATAAA	-17	NA	74460190	74448451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_74448825_74453151_74453220_74459854
transcript_101480.known	chrX	-	992	3	FSM	ENSMUSG00000090110.9	ENSMUST00000033543.14	992	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	10	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGGTTTGTTACTAAAT	NA	False	NA	NA	False	AATAAA	-17	NA	74460171	74448451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_74448825_74453151_74453220_74459620
transcript_101484.known	chrX	+	4310	11	FSM	ENSMUSG00000031201.18	ENSMUST00000033544.14	4310	11	0	0	0	0	multi-exon	FALSE	canonical	1	239	junction_10	337.579694294547	669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAATCTTTATGACTTTGG	NA	False	NA	NA	False	NA	NA	NA	74460233	74497607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_74460448_74461182_74461200_74462016_74462072_74466384_74466505_74479070_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574_74493752_74494289
transcript_101487.nnic	chrX	+	1151	11	NNC	ENSMUSG00000031201.18	novel	4310	11	NA	NA	-8	1701	at_least_one_novel_splicesite	FALSE	canonical	1	27	junction_10	385.15219069869	748	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTGGTCATGGTATTTT	NA	False	NA	15	True	NA	NA	NA	74460225	74499308	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_74460448_74461182_74461200_74462016_74462072_74466384_74466505_74479070_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574_74493752_74499157
transcript_101489.known	chrX	+	2473	10	FSM	ENSMUSG00000031201.18	ENSMUST00000114074.8	2473	10	0	0	0	0	multi-exon	FALSE	canonical	1	349	junction_4	251.832836972818	1101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGAAAAAAAGGTTGTCT	NA	False	NA	NA	False	NA	NA	NA	74460315	74495314	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_74460448_74461182_74461200_74462016_74462072_74466384_74466505_74479070_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574
transcript_101501.known	chrX	+	1595	6	FSM	ENSMUSG00000031197.12	ENSMUST00000033540.6	1595	6	0	0	0	0	multi-exon	FALSE	canonical	3	1794	junction_5	66.7580706731403	14982	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGACAATTTTTTCATT	NA	False	NA	14	True	ATTAAA	-20	NA	74557904	74578548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74574690_74574830_74577513
transcript_101502.known	chrX	+	632	5	FSM	ENSMUSG00000031197.12	ENSMUST00000114070.10	632	5	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_4	774.241685457455	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGTCCTTATTAGAAACTT	NA	False	NA	NA	False	AATAAA	-15	NA	74557904	74567652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74567441
transcript_101507.nnic	chrX	+	1018	6	Fusion	ENSMUSG00000031197.12_ENSMUSG00000086937.2	novel	1595	6	NA	NA	-5	0	multi-exon	FALSE	canonical	0	0	junction_4	914.697895482437	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTGTGTTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	74557917	74618874	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74617342_74617409_74618330
transcript_101509.known	chrX	-	3401	2	FSM	ENSMUSG00000031202.6	ENSMUST00000033545.6	3401	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATGTGTGTTGTAGCTAT	442	False	NA	NA	False	AGTAAA	-28	NA	74621837	74615651	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_74618614_74621398
transcript_101512.known	chrX	-	3242	16	FSM	ENSMUSG00000016382.16	ENSMUST00000033547.14	3242	16	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_15	76.3600826493936	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTCTCTACTCTCTTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	74918180	74829268	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_74830506_74834567_74834693_74834890_74835015_74837194_74837329_74837782_74837898_74838912_74838992_74839939_74840136_74843000_74843097_74844107_74844251_74845181_74845348_74846130_74846213_74848745_74848879_74849356_74849487_74859689_74859854_74870478_74870560_74917943
transcript_101513.known	chrX	-	3149	16	FSM	ENSMUSG00000016382.16	ENSMUST00000114059.10	3149	16	0	0	0	0	multi-exon	FALSE	canonical	3	263	junction_13	28.3953047762008	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTCTTTTGTTTTAATGA	NA	False	NA	NA	False	AATAAA	-26	NA	74918788	74829259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_74830506_74834567_74834693_74834890_74835015_74837194_74837329_74837782_74837898_74838912_74838992_74839939_74840136_74843000_74843097_74844107_74844251_74845181_74845348_74846130_74846213_74848745_74848879_74849356_74849487_74859689_74859854_74870478_74870560_74918653
transcript_101516.known	chrX	-	656	3	FSM	ENSMUSG00000016382.16	ENSMUST00000126599.2	656	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATGTTCCCCAAACTACC	NA	False	NA	NA	False	TTTAAA	-22	NA	74918705	74917018	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_74917581_74917943_74917986_74918653
transcript_101519.known	chrX	+	5234	16	FSM	ENSMUSG00000025246.14	ENSMUST00000088217.12	5234	16	0	0	0	0	multi-exon	TRUE	canonical	3	377	junction_1	40.4669412401448	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAACATAGTGACTGTGTT	NA	False	NA	12	True	AATAAA	-20	NA	76554618	76706589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_76554876_76677151_76677247_76684999_76685114_76687016_76687163_76689813_76690076_76691397_76691531_76691857_76692000_76692259_76692324_76692428_76692527_76693478_76693540_76693974_76694097_76696369_76696445_76696819_76696948_76699011_76699178_76702306_76702409_76703320
transcript_101533.known	chrX	+	402	1	FSM	ENSMUSG00000081049.2	ENSMUST00000118723.2	402	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	870	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGCGGTGACTTGATGTT	NA	False	NA	NA	False	AAAAAG	-13	NA	78238652	78239054	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_78238700_78239100
transcript_101541.known	chrX	-	1854	4	FSM	ENSMUSG00000046942.18	ENSMUST00000052283.7	1854	4	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_2	116.448367194316	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGCTCTCTTTTATTAC	NA	False	NA	0	True	AATAAA	-22	NA	78715041	78666836	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_78668390_78671446_78671527_78685326_78685395_78714888
transcript_101543.known	chrX	-	1725	3	FSM	ENSMUSG00000046942.18	ENSMUST00000114016.10	1725	3	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_2	42	1959	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGCTCTCTTTTATTAC	NA	False	NA	0	True	AATAAA	-22	NA	78679188	78666836	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_78668390_78671446_78671527_78679096
transcript_101546.known	chrX	-	1407	1	FSM	ENSMUSG00000083367.2	ENSMUST00000120076.2	1407	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGATAAAGTTGCATTGTCT	NA	False	NA	NA	False	AATAAA	-13	NA	79578757	79577350	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_79577400_79578800
transcript_101547.known	chrX	+	4007	3	FSM	ENSMUSG00000025666.17	ENSMUST00000026760.3	4007	3	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_2	10.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTTACTTTGTGTCTTC	NA	False	NA	18	True	ATTAAA	-24	NA	80114321	80141478	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_80114767_80127896_80128038_80138057
transcript_101553.known	chrX	+	586	3	FSM	ENSMUSG00000025666.17	ENSMUST00000150052.2	586	3	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	73.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTGACATCTTTTCTAAC	NA	False	NA	NA	False	AAAAAG	-28	NA	80114303	80138382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_80114424_80127896_80128038_80138057
transcript_101554.nic	chrX	+	1055	2	ISM	ENSMUSG00000025666.17	ENSMUST00000171953.8	1801	4	-78	10920	-71	-9965	5prime_fragment	FALSE	canonical	3	169	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAATATCTTTCACAGGG	NA	False	NA	NA	False	NA	NA	NA	80114232	80128417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_+_80114767_80127896
transcript_101555.known	chrX	-	2347	1	FSM	ENSMUSG00000082319.4	ENSMUST00000118948.2	2347	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	368	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAAAAAAAGAGAGAGAAAG	9723	False	NA	NA	False	AATAAA	-20	NA	80866336	80863989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_80864000_80866300
transcript_101560.known	chrX	+	1383	9	FSM	ENSMUSG00000045103.20	ENSMUST00000149433.2	1383	9	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_8	32.8916307744082	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	84091927	84188017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_84092066_84097576_84097639_84133422_84133498_84148749_84148952_84151185_84151272_84153548_84153707_84182933_84183101_84185331_84185444_84187634
transcript_101561.known	chrX	+	2133	7	FSM	ENSMUSG00000045103.20	ENSMUST00000132333.8	2133	7	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_3	27.9011150713053	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAGAAAAAAAAAAGTA	NA	False	NA	NA	False	NA	NA	NA	84091924	84184342	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_84092066_84097576_84097639_84133422_84133498_84148749_84148952_84151185_84151272_84153548_84153707_84182933
transcript_101570.nnic	chrX	+	2841	4	Intergenic	novelGene_127	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	535	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTAGCATTACAATAGATC	NA	False	NA	NA	False	NA	NA	NA	83456434	83486837	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chrX_+_83458730_83459197_83459397_83473568_83473652_83486573
transcript_101572.nnic	chrX	+	1095	3	Intergenic	novelGene_126	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	203	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTAGCATTACAATAGATC	NA	False	NA	NA	False	NA	NA	NA	83445212	83486837	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chrX_+_83445961_83473568_83473652_83486573
transcript_101577.nnic	chrX	+	3160	3	NNC	ENSMUSG00000045103.20	novel	10809	51	NA	NA	-175676	133243	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATCTTCTCTGTAGCTATT	NA	False	NA	NA	False	NA	NA	NA	83467130	83486743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_83470038_83473568_83473652_83486573
transcript_101578.known	chrX	-	4279	21	FSM	ENSMUSG00000025059.17	ENSMUST00000113978.9	4279	21	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_12	44.8534000940843	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTCTTTCTGTCTCTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	84820259	84745542	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_84748003_84749843_84749931_84754656_84754738_84755947_84756092_84756204_84756326_84756879_84756965_84757947_84758045_84759270_84759350_84773807_84773889_84774488_84774532_84780438_84780507_84780919_84780956_84782827_84782846_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84797937_84798016_84804180_84804288_84804939_84805014_84820031
transcript_101582.known	chrX	-	4245	20	FSM	ENSMUSG00000025059.17	ENSMUST00000156390.8	4245	20	0	0	0	0	multi-exon	TRUE	canonical	3	125	junction_19	13.2977827073068	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTCTTTCTGTCTCTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	84820243	84745542	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_84748003_84749843_84749931_84754656_84754738_84755947_84756092_84756204_84756326_84756879_84756965_84757947_84758045_84759270_84759350_84773807_84773889_84774488_84774532_84780438_84780507_84780919_84780956_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84797937_84798016_84804180_84804288_84804939_84805014_84820031
transcript_101585.known	chrX	-	4340	19	FSM	ENSMUSG00000025059.17	ENSMUST00000026039.15	4340	19	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	33.6576812358314	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTCTTTCTGTCTCTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	84820425	84745542	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_84748003_84754656_84754738_84755947_84756092_84756204_84756326_84756879_84756965_84757947_84758045_84759270_84759350_84773807_84773889_84774488_84774532_84780438_84780507_84780919_84780956_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84797937_84798016_84804180_84804288_84804939_84805014_84820031
transcript_101587.nic	chrX	-	1978	19	NIC	ENSMUSG00000025059.17	novel	778	8	NA	NA	-74	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	37.4737768395085	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTTTCAGCAGTATT	NA	False	NA	NA	False	AATAAA	-18	NA	84820333	84750601	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_84750792_84754656_84754738_84755947_84756092_84756204_84756326_84756879_84756965_84757947_84758045_84759270_84759350_84773807_84773889_84774488_84774532_84780438_84780507_84780919_84780956_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84797937_84798016_84804180_84804288_84804939_84805014_84820031
transcript_101595.known	chrX	+	1808	2	FSM	ENSMUSG00000025056.5	ENSMUST00000026036.5	1808	2	0	0	0	0	multi-exon	FALSE	canonical	3	839	junction_1	0	2199	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGACTGGAGAGTTTTCTTG	NA	False	NA	11	True	AATAAA	-23	NA	85235369	85239553	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_85236581_85238956
transcript_101600.nnic	chrX	-	2245	4	NNC	ENSMUSG00000035427.19	novel	2403	3	NA	NA	-56	5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	13.589211407093	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTTTATTCTTTGCTCA	NA	False	NA	NA	False	AATAAA	-17	NA	85299881	85293854	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_85294567_85294785_85296089_85298945_85299028_85299733
transcript_101601.nnic	chrX	-	2376	4	NNC	ENSMUSG00000035427.19	novel	2403	3	NA	NA	-56	5	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	13.589211407093	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTTTATTCTTTGCTCA	NA	False	NA	NA	False	AATAAA	-17	NA	85299881	85293854	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_85294698_85294785_85296089_85298945_85299028_85299733
transcript_101604.nnic	chrX	-	2196	3	NNC	ENSMUSG00000035427.19	novel	2401	3	NA	NA	-53	-49165	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	13	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTTTATTCTTTGCTCA	NA	False	NA	NA	False	AATAAA	-17	NA	85348752	85343026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_85344996_85347819_85347902_85348607
transcript_101605.known	chrX	-	2403	3	FSM	ENSMUSG00000035427.19	ENSMUST00000113969.10	2403	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	2.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGAGATTTTATTCTTT	NA	False	NA	NA	False	AATAAA	-12	NA	85299825	85293859	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_85296089_85298945_85299028_85299733
transcript_101606.known	chrX	-	842	1	FSM	ENSMUSG00000097961.2	ENSMUST00000182943.2	842	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87803918	87803076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_87803100_87803900
transcript_101610.nnic	chrX	+	1394	2	Genic_Genomic	ENSMUSG00000091497.2	novel	993	1	NA	NA	-13843	209	multi-exon	FALSE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATATTTCATTTATTGACT	NA	False	NA	NA	False	AATAAA	-21	NA	89921904	89936949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chrX_+_89922040_89935690
transcript_101614.known	chrX	-	559	2	FSM	ENSMUSG00000057805.5	ENSMUST00000078832.5	559	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATCTGTCTATGAGAATCT	NA	False	NA	NA	False	NA	NA	NA	90619517	90618815	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_90619171_90619313
transcript_101615.known	chrX	+	577	2	FSM	ENSMUSG00000095110.2	ENSMUST00000088134.4	577	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATCTGTCTCTGAGAATCT	NA	False	NA	NA	False	AATAAA	-19	NA	92199759	92200479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_92199990_92200132
transcript_101616.known	chrX	+	577	2	FSM	ENSMUSG00000096153.2	ENSMUST00000088133.4	577	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATCTGTCTCTGAGAATCT	NA	False	NA	NA	False	AATAAA	-19	NA	92226832	92227552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_92227063_92227205
transcript_101618.known	chrX	-	5346	37	FSM	ENSMUSG00000006678.7	ENSMUST00000006856.3	5346	37	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_20	43.7489682418023	904	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTACTGTGTTTTGTTTTG	4277	False	NA	-2	True	AATAAA	-19	NA	92675761	92348372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_92349423_92419196_92419291_92464172_92464290_92504974_92505107_92506899_92507079_92517918_92518094_92524084_92524217_92531700_92531834_92534348_92534555_92536324_92536418_92537154_92537188_92604973_92605097_92605475_92605626_92616713_92616839_92619384_92619485_92621102_92621223_92621682_92621813_92624327_92624504_92625623_92625741_92628191_92628282_92629449_92629512_92630603_92630689_92635011_92635167_92637424_92637564_92638379_92638455_92639720_92639838_92640823_92640937_92646806_92646980_92647067_92647270_92647515_92647604_92648012_92648106_92648956_92649020_92649453_92649570_92664110_92664192_92667424_92667522_92670093_92670219_92675674
transcript_101623.nnic	chrX	+	1617	9	NNC	ENSMUSG00000035246.17	novel	4888	8	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_8	21.2176223927187	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGTTGCCTTGTTTATT	NA	False	NA	4	True	AATAAA	-17	NA	92718726	92793557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_92719083_92745690_92745791_92750163_92750281_92761390_92761543_92763784_92763864_92775282_92775426_92778370_92778560_92789824_92790040_92793291
transcript_101626.known	chrX	+	4888	8	FSM	ENSMUSG00000035246.17	ENSMUST00000045898.4	4888	8	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_6	4.01527694930148	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGTTGCCTTGTTTATT	NA	False	NA	4	True	AATAAA	-17	NA	92718707	92793557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_92719083_92745690_92745791_92750163_92750281_92761390_92761543_92763784_92763864_92775282_92775426_92778370_92778560_92789824
transcript_101634.known	chrX	-	2115	12	FSM	ENSMUSG00000035232.9	ENSMUST00000045748.7	2115	12	0	0	0	0	multi-exon	FALSE	canonical	3	493	junction_5	23.1352473386711	296	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACACCTTGGTTTGAAAGA	NA	False	NA	-2	True	ATTAAA	-33	NA	92875807	92808212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_92808862_92812494_92812635_92820914_92821029_92825072_92825184_92825751_92825854_92827385_92827463_92832499_92832578_92843719_92843810_92845814_92846000_92852476_92852549_92857532_92857675_92875452
transcript_101635.known	chrX	+	2997	3	FSM	ENSMUSG00000081044.9	ENSMUST00000121565.8	2997	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTGATTCCAATTCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	93012264	93019076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_93013537_93015408_93015640_93017582
transcript_101637.known	chrX	-	6933	8	FSM	ENSMUSG00000079509.11	ENSMUST00000113927.8	6933	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_7	34.1317973719043	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTAGTGGAGTGTTGGCT	NA	False	NA	-2	True	AATAAA	-21	NA	93167013	93118237	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_93123586_93124325_93124467_93124942_93125093_93125430_93125575_93125755_93125906_93141888_93142459_93145896_93145987_93166673
transcript_101644.known	chrX	-	879	4	FSM	ENSMUSG00000079509.11	ENSMUST00000113925.8	879	4	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	30.6920185064456	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTTGTCCAGGTGTGATG	NA	False	NA	NA	False	ATTAAA	-28	NA	93166715	93141779	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_93142459_93145896_93145987_93157801_93157870_93166673
transcript_101647.nic	chrX	-	881	3	ISM	ENSMUSG00000079509.11	ENSMUST00000113927.8	6933	8	228	23542	-47	0	5prime_fragment	FALSE	canonical	3	21	junction_2	52.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTTGTCCAGGTGTGATG	NA	False	NA	NA	False	ATTAAA	-28	NA	93166785	93141779	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_93142459_93145896_93145987_93166673
transcript_101651.known	chrX	-	3647	12	FSM	ENSMUSG00000035150.16	ENSMUST00000050328.15	3647	12	0	0	0	0	multi-exon	TRUE	canonical	3	1008	junction_2	64.9970120101527	1207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTGTGCCCATGTGTTT	NA	False	NA	-2	True	AATAAA	-21	NA	93256315	93232312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
transcript_101662.known	chrX	-	1103	9	FSM	ENSMUSG00000035150.16	ENSMUST00000113922.2	1103	9	0	0	0	0	multi-exon	FALSE	canonical	3	1024	junction_3	65.9374703791403	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTTTGTTTTGTTTTTAA	NA	False	NA	NA	False	AGTAAA	-18	NA	93256257	93243246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
transcript_101669.nic	chrX	+	1167	5	NIC	ENSMUSG00000043929.17	novel	627	4	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	18.9868375460475	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGCAGCCTGGCATGTTT	NA	False	NA	NA	False	AATAAA	-24	NA	93278183	93297673	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_93278260_93278826_93279027_93285550_93285602_93296020_93296733_93297545
transcript_101671.known	chrX	+	1227	5	FSM	ENSMUSG00000043929.17	ENSMUST00000113911.9	1227	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	15.1224171348366	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGCAGCCTGGCATGTTT	NA	False	NA	NA	False	AATAAA	-24	NA	93278595	93297673	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_93278732_93278826_93279027_93285550_93285602_93296020_93296733_93297545
transcript_101673.known	chrX	+	3944	4	FSM	ENSMUSG00000043929.17	ENSMUST00000096369.10	3944	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	6.59966329107444	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATGAGTAAGGACTTTTC	NA	False	NA	NA	False	NA	NA	NA	93278592	93299574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_93278732_93278826_93279027_93285550_93285602_93296020
transcript_101674.known	chrX	+	1235	4	FSM	ENSMUSG00000043929.17	ENSMUST00000113908.8	1235	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	24.3447461820136	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTCAGCAGCCTGGCAT	NA	False	NA	NA	False	AATAAA	-20	NA	93278532	93297669	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_93278732_93278826_93279027_93296020_93296733_93297545
transcript_101676.known	chrX	+	1173	9	FSM	ENSMUSG00000079508.9	ENSMUST00000113895.2	1173	9	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	144.775688566831	613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCCTGCTTTCTTTACT	NA	False	NA	NA	False	ATTAAA	-18	NA	93410788	93460699	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_93411092_93423531_93423640_93425716_93425837_93431270_93431326_93434350_93434447_93437794_93437887_93441727_93441809_93456065_93456132_93460447
transcript_101677.known	chrX	+	1032	9	FSM	ENSMUSG00000079508.9	ENSMUST00000113896.8	1032	9	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	148.965547610849	636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCCTGCTTTCTTTACT	NA	False	NA	NA	False	ATTAAA	-18	NA	93410770	93460699	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_93410933_93423531_93423640_93425716_93425837_93431270_93431326_93434350_93434447_93437794_93437887_93441727_93441809_93456065_93456132_93460447
transcript_101678.known	chrX	+	1218	9	FSM	ENSMUSG00000079508.9	ENSMUST00000113897.9	1218	9	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	150.255979498321	619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCCTGCTTTCTTTACT	NA	False	NA	NA	False	ATTAAA	-18	NA	93410759	93460699	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_93411108_93423531_93423640_93425716_93425837_93431270_93431326_93434350_93434447_93437794_93437887_93441727_93441809_93456065_93456132_93460447
transcript_101683.known	chrX	+	784	9	FSM	ENSMUSG00000079508.9	ENSMUST00000113898.8	784	9	0	0	0	0	multi-exon	FALSE	canonical	3	325	junction_1	51.8975854447969	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTTTGGGTGATGCCATA	NA	False	NA	NA	False	AGTAAA	-39	NA	93410722	93460567	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_93410769_93423531_93423640_93425716_93425837_93431270_93431326_93434350_93434447_93437794_93437887_93441727_93441809_93456065_93456132_93460447
transcript_101689.known	chrX	-	2821	13	FSM	ENSMUSG00000025151.17	ENSMUST00000026142.8	2821	13	0	0	0	0	multi-exon	TRUE	canonical	3	1240	junction_10	166.264514821681	424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTGTGCTTCTCATCTT	NA	False	NA	-2	True	AATAAA	-21	NA	93585749	93579079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581362_93581579_93581672_93581789_93581870_93582050_93582115_93582212_93582888_93583460_93584154_93584856_93584931_93585497
transcript_101691.known	chrX	-	2884	12	FSM	ENSMUSG00000025151.17	ENSMUST00000153386.8	2884	12	0	0	0	0	multi-exon	FALSE	canonical	3	1240	junction_9	165.668493041908	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTAAGTGTGCTTCTCATC	NA	False	NA	-4	True	AATAAA	-19	NA	93585596	93579081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581672_93581789_93581870_93582050_93582115_93582212_93582888_93583460_93584154_93584856_93584931_93585497
transcript_101705.known	chrX	+	2491	1	FSM	ENSMUSG00000071723.8	ENSMUST00000096368.4	2491	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGTTTGAATAATGCT	4256	False	NA	22	True	AATAAA	-28	NA	93679674	93682165	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_93679700_93682200
transcript_101706.known	chrX	-	8496	2	FSM	ENSMUSG00000050332.8	ENSMUST00000084535.6	8496	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAAGTGTTTTCTTGTTGT	NA	False	NA	NA	False	AATAAA	-30	NA	94488478	94463923	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_94472205_94488263
transcript_101708.known	chrX	-	2219	5	FSM	ENSMUSG00000035062.14	ENSMUST00000044382.7	2219	5	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	3.76662979332984	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAATGCTAACTGAGTGC	881	False	NA	NA	False	AATAAA	-15	NA	94702115	94682804	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_94684258_94685769_94685933_94686913_94687087_94688912_94689085_94701857
transcript_101711.known	chrX	-	507	2	FSM	ENSMUSG00000071721.6	ENSMUST00000096366.6	507	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGTGTCCCTGAGAATCT	NA	False	NA	NA	False	AATAAA	-19	NA	94776871	94776191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_94776415_94776587
transcript_101713.known	chrX	-	2530	13	FSM	ENSMUSG00000057421.13	ENSMUST00000079987.13	2530	13	0	0	0	0	multi-exon	FALSE	canonical	3	815	junction_5	66.9966831683148	680	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTGTCATGGTGTTTGT	NA	False	NA	-36	True	AATAAA	-4	NA	95000519	94978940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_94979256_94980977_94981129_94983904_94984555_94990016_94990165_94990472_94990680_94991375_94991462_94993942_94994053_94994915_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
transcript_101714.known	chrX	-	2581	14	FSM	ENSMUSG00000057421.13	ENSMUST00000113864.3	2581	14	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_5	331.353544718678	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTGTCATGGTGTTTGT	NA	False	NA	-36	True	AATAAA	-4	NA	95000519	94978940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_94979256_94980977_94981129_94983904_94984555_94990016_94990165_94990472_94990680_94991003_94991055_94991375_94991462_94993942_94994053_94994915_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
transcript_101716.known	chrX	+	3842	13	FSM	ENSMUSG00000031207.17	ENSMUST00000117399.2	3842	13	0	0	0	0	multi-exon	FALSE	canonical	3	982	junction_10	94.3325971702724	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATGACTCAGTCTTTCTG	NA	False	NA	6	True	AATAAA	-16	NA	95139647	95212158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129_95196405_95197900_95197985_95199069_95199217_95201452_95201550_95203693_95203858_95206972_95207104_95207355_95207517_95208980_95209074_95209530_95209756_95210075
transcript_101720.known	chrX	+	1883	4	FSM	ENSMUSG00000031207.17	ENSMUST00000149985.8	1883	4	0	0	0	0	multi-exon	FALSE	canonical	3	1220	junction_3	48.6095555306659	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95139662	95197645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129
transcript_101721.known	chrX	+	1924	8	FSM	ENSMUSG00000031209.15	ENSMUST00000154413.8	1924	8	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	2.89968330431206	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTTCTTTTCTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	95500033	95519427	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_95500222_95503180_95503376_95506496_95506698_95509415_95509661_95513550_95513764_95514338_95514522_95516417_95516673_95518983
transcript_101725.nnic	chrX	-	585	2	Antisense	novelGene_ENSMUSG00000082035.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	430	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCTCATATTTCTAACAAT	NA	False	NA	NA	False	NA	NA	NA	95529104	95528463	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chrX_-_95528793_95528848
transcript_101731.known	chrX	+	621	1	FSM	ENSMUSG00000082035.2	ENSMUST00000118924.2	621	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	68621	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-30	NA	95528464	95529085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_95528500_95529100
transcript_101733.nnic	chrX	-	1091	9	NNC	ENSMUSG00000034457.11	novel	779	6	NA	NA	-24	38643	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	54.7014625033006	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTTGTGTGACTTCACTG	NA	False	NA	NA	False	AAAAAG	-4	NA	96420846	96338802	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_96338942_96339342_96339435_96340422_96340518_96385233_96385399_96386897_96386984_96387501_96387681_96405366_96405465_96414764_96414862_96420706
transcript_101735.nnic	chrX	-	1214	8	NNC	ENSMUSG00000034457.11	novel	779	6	NA	NA	-24	38365	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	50.6117676080194	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTGTTGCTTTTTAAAAG	NA	False	NA	NA	False	AATAAA	-15	NA	96420846	96339080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_96339435_96340422_96340518_96385233_96385399_96386897_96386984_96387501_96387681_96405366_96405465_96414764_96414862_96420706
transcript_101737.known	chrX	-	2153	7	FSM	ENSMUSG00000034457.11	ENSMUST00000126283.8	2153	7	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_5	9.18331820930394	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTTCACAAGTGTAAAAAGC	NA	False	NA	NA	False	ATTAAA	-17	NA	96420822	96381396	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_96382809_96385233_96385399_96386897_96386984_96387501_96387681_96405366_96405465_96414764_96414862_96420706
transcript_101739.known	chrX	-	779	6	FSM	ENSMUSG00000034457.11	ENSMUST00000126609.2	779	6	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_4	10.0119928086271	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGGAAT	NA	False	NA	NA	False	GGGGCT	-33	NA	96420778	96385151	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_96385399_96386897_96386984_96387501_96387681_96405366_96405465_96414764_96414862_96420706
transcript_101743.known	chrX	-	4752	8	FSM	ENSMUSG00000034457.11	ENSMUST00000037353.10	4752	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	34.3130843134516	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGCCTTGTTTATTCCTC	NA	False	NA	-23	True	AATAAA	-14	NA	96420822	96377445	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_96381057_96382408_96382809_96385233_96385399_96386897_96386984_96387501_96387681_96405366_96405465_96414764_96414862_96420706
transcript_101744.known	chrX	-	7170	25	FSM	ENSMUSG00000031214.14	ENSMUST00000033560.9	7170	25	0	0	0	0	multi-exon	TRUE	canonical	1	4	junction_23	4.90959944055181	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTGTCTGATCTAATCT	NA	False	NA	NA	False	NA	NA	NA	97934591	97597882	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_97602012_97603191_97603234_97607235_97607287_97608321_97608488_97621989_97622314_97640633_97640782_97670519_97670680_97684513_97684620_97685356_97685416_97688515_97688601_97739604_97739680_97741892_97741956_97742461_97742496_97745470_97745550_97748635_97748728_97753683_97753785_97755946_97756077_97757712_97757818_97769610_97769722_97775970_97776073_97807310_97807383_97824561_97824624_97846690_97846787_97933687_97933861_97933986
transcript_101746.known	chrX	-	1782	3	FSM	ENSMUSG00000031214.14	ENSMUST00000156917.8	1782	3	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	3.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAAGAAAAAAGCAT	NA	False	NA	NA	False	NA	NA	NA	97934215	97845406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_97846787_97933687_97933861_97933986
transcript_101757.known	chrX	+	1020	6	FSM	ENSMUSG00000047694.13	ENSMUST00000140479.2	1020	6	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_3	12.2376468326227	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAAGAAAATAAACAAA	NA	False	NA	NA	False	NA	NA	NA	97981812	97987641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_97981895_97983378_97983508_97983727_97983807_97984392_97984436_97986383_97986513_97987083
transcript_101758.known	chrX	-	395	1	FSM	ENSMUSG00000082549.2	ENSMUST00000122291.2	395	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATCACATGAAAGACTGAAA	NA	False	NA	NA	False	NA	NA	NA	98006084	98005689	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_98005700_98006100
transcript_101759.known	chrX	+	4963	14	FSM	ENSMUSG00000031216.14	ENSMUST00000036606.14	4963	14	0	0	0	0	multi-exon	TRUE	canonical	3	27	junction_1	6.60016137511158	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGGCTCTGGAGAGTTTG	NA	False	NA	3	True	AATAAA	-18	NA	98086186	98118334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_98086401_98104333_98104406_98106970_98107053_98107999_98108064_98109163_98110570_98111194_98111369_98112179_98112340_98112793_98112993_98113352_98113564_98113827_98113943_98114879_98115105_98116039_98116258_98116359_98116537_98116688
transcript_101760.known	chrX	+	3258	5	FSM	ENSMUSG00000031217.9	ENSMUST00000052839.7	3258	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	5.76085931090146	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAATT	NA	False	NA	52	True	NA	NA	NA	98179735	98192597	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_98180620_98188897_98189176_98190083_98190177_98190357_98190484_98190720
transcript_101761.known	chrX	-	695	4	FSM	ENSMUSG00000085053.2	ENSMUST00000152025.2	695	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTGTTTTGTCCTGACTC	NA	False	NA	NA	False	NA	NA	NA	98462501	98453176	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_98453512_98454093_98454225_98455239_98455375_98462407
transcript_101764.known	chrX	+	361	3	FSM	ENSMUSG00000085553.2	ENSMUST00000129259.2	361	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGGGAGAGAAAACAGACCA	NA	False	NA	NA	False	NA	NA	NA	98502630	98504359	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_98502763_98503182_98503300_98504247
transcript_101767.known	chrX	-	1676	3	FSM	ENSMUSG00000034403.17	ENSMUST00000113797.4	1676	3	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_1	188.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTATTAAAGTTCTTCTT	NA	False	NA	-36	True	NA	NA	NA	98514278	98509751	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_98511180_98511728_98511921_98514222
transcript_101768.nnic	chrX	-	1085	3	NNC	ENSMUSG00000034403.17	novel	3038	3	NA	NA	-12	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	189.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGCATCATTTGGATTT	NA	False	NA	0	True	ATTAAA	-26	NA	98514353	98509715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_98510106_98511356_98511921_98514222
transcript_101772.known	chrX	-	2666	2	FSM	ENSMUSG00000034403.17	ENSMUST00000167246.2	2666	2	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_1	0	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAATAAATAAAT	NA	False	NA	NA	False	AAAACA	-20	NA	98514341	98509373	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_98511921_98514222
transcript_101774.known	chrX	-	2563	2	FSM	ENSMUSG00000034403.17	ENSMUST00000036354.7	2563	2	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACAATGGCATCATTTGG	NA	False	NA	-4	True	ATTAAA	-22	NA	98514298	98509719	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_98512207_98514222
transcript_101776.nic	chrX	+	1123	6	NIC	ENSMUSG00000059327.10	novel	403	5	NA	NA	-3	352	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	10.8369737473153	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAGGTGCACTCCAGATT	NA	False	NA	NA	False	ACTAAA	-31	NA	99430857	99441114	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_99430979_99433307_99433488_99434946_99434982_99435938_99435991_99438624_99438756_99440510
transcript_101779.nnic	chrX	-	1792	9	NNC	ENSMUSG00000031220.15	novel	1984	8	NA	NA	-51474	-269	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_7	4.92442890089805	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGCTCCAGCTGGTCT	NA	False	NA	NA	False	AATAAA	-17	NA	99537797	99446100	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_99446547_99446745_99446946_99447736_99447912_99448134_99448340_99448564_99448636_99449191_99449303_99467905_99468055_99488875_99489014_99537500
transcript_101783.known	chrX	-	1619	7	FSM	ENSMUSG00000031220.15	ENSMUST00000033567.15	1619	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	5.8142545141708	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGGAGAGTGACACAAAATT	NA	False	NA	NA	False	NA	NA	NA	99456193	99445826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_99446547_99446745_99446946_99447736_99447912_99448134_99448340_99448564_99448636_99449191_99449303_99456056
transcript_101786.known	chrX	+	1518	6	FSM	ENSMUSG00000031221.8	ENSMUST00000033570.6	1518	6	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_5	20.4743742273116	2739	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGCCTGGACTTTGTCCT	NA	False	NA	NA	False	NA	NA	NA	99537896	99559731	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_99538163_99538510_99538805_99546600_99546797_99548795_99548876_99549545_99549659_99559162
transcript_101787.known	chrX	+	4983	30	FSM	ENSMUSG00000034311.4	ENSMUST00000048962.4	4983	30	0	0	0	0	multi-exon	TRUE	canonical	3	204	junction_20	20.3345386022518	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGAAGGAGATCCTTCTAT	NA	False	NA	18	True	AATAAA	-22	NA	99669342	99770820	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_99670195_99670309_99670425_99677444_99677636_99679289_99679383_99681889_99682057_99682282_99682378_99708341_99708459_99709278_99709455_99713514_99713577_99720892_99721026_99723451_99723511_99723614_99723721_99732663_99732721_99734119_99734306_99738476_99738581_99739603_99739749_99741036_99741148_99747647_99747732_99748395_99748510_99755397_99755554_99755667_99755769_99757483_99757614_99759186_99759358_99759876_99759985_99760936_99761015_99761542_99761642_99762099_99762277_99768247_99768365_99769733_99769857_99770064
transcript_101791.known	chrX	-	1041	7	FSM	ENSMUSG00000015668.14	ENSMUST00000059099.7	1041	7	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_6	158.307366291724	1080	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAATAAACGTGGCTTGAG	NA	False	NA	-29	True	AGTAAA	-10	NA	99669541	99666513	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669421
transcript_101792.nnic	chrX	-	1080	7	NNC	ENSMUSG00000015668.14	novel	1626	7	NA	NA	-61	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	208.783314041669	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACTGCTTGAATATAAAAT	NA	False	NA	-4	True	AATAAA	-17	NA	99669605	99666488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669471
transcript_1018.known	chr1	-	3907	12	FSM	ENSMUSG00000025920.20	ENSMUST00000128957.9	3907	12	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_10	22.8368268627019	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTGGTATGATTTAAGCC	NA	False	NA	NA	False	NA	NA	NA	16589471	16413709	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_16416236_16436302_16436364_16439978_16440111_16444897_16445036_16460044_16460258_16462740_16462849_16464274_16464435_16510546_16510683_16533258_16533419_16556243_16556375_16579565_16579633_16589396
transcript_101803.known	chrX	-	1626	7	FSM	ENSMUSG00000015668.14	ENSMUST00000015812.12	1626	7	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_6	98.6728601659713	2167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACTACTGCTTGAATATAA	NA	False	NA	-7	True	AATAAA	-14	NA	99670174	99666491	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669491
transcript_101804.known	chrX	-	1497	6	FSM	ENSMUSG00000015668.14	ENSMUST00000144643.8	1497	6	0	0	0	0	multi-exon	FALSE	canonical	3	516	junction_1	29.9506260368627	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACTGCTTGAATATAAAAT	NA	False	NA	-4	True	AATAAA	-17	NA	99669544	99666488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893
transcript_101805.known	chrX	+	3692	14	FSM	ENSMUSG00000000881.13	ENSMUST00000113735.3	3692	14	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	29.3332212656995	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATGGCTCAGAGGTCTT	NA	False	NA	NA	False	AATAAA	-15	NA	99818346	99862014	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_99818551_99819412_99819570_99819984_99820088_99840291_99840407_99850117_99850295_99850785_99850862_99851658_99851759_99855107_99855150_99856331_99856383_99856942_99857045_99857809_99857983_99858398_99858509_99858813_99858906_99859824
transcript_101806.known	chrX	+	3316	12	FSM	ENSMUSG00000000881.13	ENSMUST00000151020.8	3316	12	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	11.5078126534158	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATGGCTCAGAGGTCTT	699	False	NA	NA	False	AATAAA	-15	NA	99820890	99862014	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_99820979_99840291_99840407_99850117_99850295_99850785_99850862_99851658_99851759_99855107_99855150_99856331_99856383_99856942_99857045_99857809_99857983_99858398_99858509_99858813_99858906_99859824
transcript_101808.known	chrX	-	3250	30	FSM	ENSMUSG00000009670.12	ENSMUST00000009814.10	3250	30	0	0	0	0	multi-exon	TRUE	canonical	3	57	junction_17	8.2193472636908	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCATTGATCAGCTGATT	NA	False	NA	-5	True	AATAAA	-16	NA	100103245	99882253	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_99882667_99883306_99883472_99892654_99892776_99893874_99893984_99895431_99895582_99920141_99920215_99923582_99923700_99925849_99925921_99926528_99926616_99927967_99928009_99947363_99947421_99949724_99949811_99960131_99960257_99976993_99977097_99990261_99990400_99995170_99995257_99998305_99998458_100015699_100015779_100018785_100018868_100021229_100021326_100029298_100029354_100051308_100051395_100059149_100059231_100076103_100076224_100076306_100076388_100082652_100082733_100087046_100087132_100094064_100094187_100102961_100103024_100103118
transcript_101809.known	chrX	-	2591	25	FSM	ENSMUSG00000009670.12	ENSMUST00000113716.3	2591	25	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	14.9015286315047	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTCTGCTAAGTTTAACAT	NA	False	NA	NA	False	NA	NA	NA	100103273	99921487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_99921832_99923582_99923700_99925849_99925921_99926528_99926616_99927967_99928009_99947363_99947421_99949724_99949811_99960131_99960257_99976993_99977097_99990261_99990400_99995170_99995257_99998305_99998458_100015699_100015779_100018785_100018868_100021229_100021326_100029298_100029354_100051308_100051395_100059149_100059231_100076103_100076224_100076306_100076388_100082652_100082733_100087046_100087132_100094064_100094187_100102961_100103024_100103118
transcript_101810.known	chrX	-	3278	30	FSM	ENSMUSG00000009670.12	ENSMUST00000113718.8	3278	30	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_6	15.4932381399703	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCATTGATCAGCTGATT	NA	False	NA	-5	True	AATAAA	-16	NA	100103273	99882253	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_99882667_99883306_99883472_99892654_99892776_99893874_99893984_99895431_99895582_99920141_99920217_99923584_99923700_99925849_99925921_99926528_99926616_99927967_99928009_99947363_99947421_99949724_99949811_99960131_99960257_99976993_99977097_99990261_99990400_99995170_99995257_99998305_99998458_100015699_100015779_100018785_100018868_100021229_100021326_100029298_100029354_100051308_100051395_100059149_100059231_100076103_100076224_100076306_100076388_100082652_100082733_100087046_100087132_100094064_100094187_100102961_100103024_100103118
transcript_101817.known	chrX	-	2750	13	FSM	ENSMUSG00000031297.15	ENSMUST00000113710.8	2750	13	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_12	396.021464064765	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAACCAAAAAACC	NA	False	NA	NA	False	ATTAAA	-11	NA	100129626	100122827	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128877_100129064_100129193
transcript_101818.nnic	chrX	-	2262	12	NNC	ENSMUSG00000031297.15	novel	2232	12	NA	NA	80	0	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_11	409.125251083797	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAACCTGTCCTGTTCTT	NA	False	NA	NA	False	ATTAAA	-23	NA	100128878	100122815	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128759
transcript_101825.known	chrX	-	2371	13	FSM	ENSMUSG00000031297.15	ENSMUST00000101362.8	2371	13	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_12	497.596780089618	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAACCAAAAAACCT	NA	False	NA	NA	False	ATTAAA	-12	NA	100128958	100122826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128426_100128585_100128877
transcript_101826.known	chrX	-	2717	11	FSM	ENSMUSG00000031297.15	ENSMUST00000138162.2	2717	11	0	0	0	0	multi-exon	FALSE	canonical	3	1250	junction_10	85.0282306060758	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAACCTGTCCTGTTCTT	NA	False	NA	NA	False	ATTAAA	-23	NA	100129011	100122815	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_100123199_100123305_100123415_100123706_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128877
transcript_10183.known	chr10	-	665	6	FSM	ENSMUSG00000090841.3	ENSMUST00000164181.2	665	6	0	0	0	0	multi-exon	FALSE	canonical	3	2189	junction_3	223.361948415571	47461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGTTCTTTCTTTCTTTC	8224	False	NA	-4	True	AATAAA	-21	NA	128329744	128326728	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128326903_128327927_128328006_128328097_128328272_128328470_128328615_128329407_128329436_128329677
transcript_101831.known	chrX	-	1114	6	FSM	ENSMUSG00000046032.17	ENSMUST00000156473.8	1114	6	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_2	126.702170462861	1111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTCTCAGCTAGTTTCT	NA	False	NA	-11	True	NA	NA	NA	100266159	100141391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_100141834_100145973_100146042_100257379_100257471_100258006_100258132_100259088_100259185_100265867
transcript_101836.known	chrX	-	1002	5	FSM	ENSMUSG00000046032.17	ENSMUST00000077876.4	1002	5	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_1	142.088880634622	652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCGTTTTTCTCCTTAA	NA	False	NA	-15	True	ATTAAA	-15	NA	100266169	100255564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_100255953_100257379_100257471_100258006_100258132_100259088_100259185_100265867
transcript_101839.known	chrX	-	2415	4	FSM	ENSMUSG00000046032.17	ENSMUST00000120389.8	2415	4	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_3	23.8094285712381	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCGTTTTTCTCCTTAA	NA	False	NA	-15	True	ATTAAA	-15	NA	100266155	100255564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_100257471_100258006_100258132_100259088_100259185_100265867
transcript_10184.known	chr10	-	691	7	FSM	ENSMUSG00000090841.3	ENSMUST00000218127.2	691	7	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	1160.32375750142	3058	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTCTTTCTTTCTTT	8242	False	NA	-5	True	AATAAA	-20	NA	128329726	128326729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128326903_128327588_128327634_128327927_128328006_128328097_128328272_128328470_128328615_128329407_128329436_128329677
transcript_101844.known	chrX	-	1670	8	FSM	ENSMUSG00000031304.19	ENSMUST00000033664.14	1670	8	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	5.61702950038214	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTTACAGGGGTTGGG	NA	False	NA	NA	False	AATAAA	-26	NA	100311861	100307983	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_100308644_100308981_100309049_100309235_100309333_100309786_100309950_100310583_100310727_100310916_100311102_100311316_100311471_100311660
transcript_101845.nnic	chrX	-	1582	8	NNC	ENSMUSG00000031304.19	novel	1670	8	NA	NA	-6467	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	11.3856336258122	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTTACAGGGGTTGGG	NA	False	NA	NA	False	AATAAA	-26	NA	100318328	100307983	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_100308644_100308981_100309049_100309235_100309333_100309786_100309950_100310583_100310727_100310916_100311102_100311316_100311471_100318215
transcript_101848.nic	chrX	-	1569	7	NIC	ENSMUSG00000031304.19	novel	1670	8	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	12.0611866009204	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTTACAGGGGTTGGG	NA	False	NA	NA	False	AATAAA	-26	NA	100311857	100307983	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_100308644_100308981_100309049_100309786_100309950_100310583_100310727_100310916_100311102_100311316_100311471_100311660
transcript_10185.known	chr10	-	608	6	FSM	ENSMUSG00000090841.3	ENSMUST00000217969.2	608	6	0	0	0	0	multi-exon	FALSE	canonical	2	43	junction_4	956.330152196405	8289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTGGTTCTTTCTTTCT	8242	False	NA	-7	True	AATAAA	-18	NA	128329726	128326731	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128326903_128327927_128328006_128328097_128328272_128328470_128328579_128329407_128329436_128329677
transcript_101850.known	chrX	-	558	3	FSM	ENSMUSG00000031304.19	ENSMUST00000127538.2	558	3	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	5.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGATAAGGGGAATTACCTC	NA	False	NA	NA	False	NA	NA	NA	100311764	100310801	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_100311102_100311316_100311471_100311660
transcript_101851.known	chrX	-	1335	2	FSM	ENSMUSG00000031304.19	ENSMUST00000145074.2	1335	2	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAGAACAAGAAATTAGAA	NA	False	NA	NA	False	NA	NA	NA	100311796	100310271	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_100311471_100311660
transcript_101854.known	chrX	+	3273	18	FSM	ENSMUSG00000079487.12	ENSMUST00000148846.8	3273	18	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_10	46.1443500123502	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTGAATGTACACATGG	NA	False	NA	31	True	AATACA	-22	NA	100329629	100341071	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_100330154_100331166_100331239_100331654_100331789_100331955_100332118_100332736_100332849_100333011_100333102_100333623_100333734_100333930_100334067_100334800_100334963_100336149_100336532_100336745_100336893_100337030_100337228_100337398_100337477_100337563_100337782_100339447_100339695_100340198_100340340_100340524_100340607_100340792
transcript_101856.known	chrX	+	6940	46	FSM	ENSMUSG00000079487.12	ENSMUST00000117706.8	6940	46	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_43	26.9266401657779	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTGAATGTACACATGG	NA	False	NA	31	True	AATACA	-22	NA	100317635	100341071	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_100317966_100318501_100318607_100318777_100318970_100319097_100319258_100319705_100319888_100320047_100320159_100320270_100320526_100321039_100321187_100321458_100321559_100321669_100321807_100322033_100322166_100322950_100323078_100324161_100324392_100324773_100324855_100324968_100325140_100325343_100325489_100325655_100325707_100326006_100326126_100326305_100326450_100326887_100327052_100327273_100327406_100327751_100327980_100328149_100328295_100328467_100328589_100329066_100329169_100329264_100329379_100329630_100329807_100329973_100330154_100331166_100331239_100331654_100331789_100331955_100332118_100332736_100332849_100333011_100333102_100333623_100333734_100333930_100334067_100334800_100334963_100336149_100336528_100336741_100336893_100337030_100337237_100337398_100337477_100337563_100337619_100337693_100337782_100339447_100339695_100340222_100340340_100340524_100340607_100340792
transcript_101858.known	chrX	+	1585	2	FSM	ENSMUSG00000047797.15	ENSMUST00000119190.2	1585	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTGTTTTGAGTGTTGAA	NA	False	NA	NA	False	ATTAAA	-22	NA	100427341	100429235	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_100427449_100427757
transcript_10186.known	chr10	-	1668	5	FSM	ENSMUSG00000090841.3	ENSMUST00000217733.2	1668	5	0	0	0	0	multi-exon	FALSE	canonical	3	2189	junction_2	245.142305610435	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTCTTTCTTTCTTT	8245	False	NA	-5	True	AATAAA	-20	NA	128329723	128326729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128328006_128328097_128328272_128328470_128328615_128329407_128329436_128329677
transcript_101861.nic	chrX	-	1923	7	ISM	ENSMUSG00000031310.17	ENSMUST00000121520.8	5564	25	32	10549	-22	0	5prime_fragment	FALSE	canonical	3	74	junction_4	23.7065391822594	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCCTCAGCCTCTCCTT	NA	False	NA	-4	True	NA	NA	NA	100463488	100458538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_100459013_100459366_100459545_100459772_100460068_100460514_100460582_100460892_100460937_100461878_100462559_100463303
transcript_101862.known	chrX	-	1890	7	FSM	ENSMUSG00000031310.17	ENSMUST00000121429.8	1890	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	51.0274980334678	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCCTCAGCCTCTCCTT	NA	False	NA	-4	True	NA	NA	NA	100464291	100458538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_100459013_100459366_100459545_100459772_100460068_100460514_100460588_100460892_100460937_100461878_100462559_100464145
transcript_101863.nic	chrX	-	1401	7	NIC	ENSMUSG00000031310.17	novel	5564	25	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_5	46.821172798449	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCCTCAGCCTCTCCTT	NA	False	NA	-4	True	NA	NA	NA	100463488	100458538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_100459013_100459366_100459545_100459772_100460068_100460514_100460582_100460892_100460937_100462400_100462559_100463303
transcript_101865.known	chrX	-	1859	7	FSM	ENSMUSG00000031310.17	ENSMUST00000120201.8	1859	7	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_4	20.0637871688163	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTCAGCCTCTCCTTCCC	NA	False	NA	-1	True	NA	NA	NA	100463415	100458535	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_100459013_100459366_100459545_100459772_100460068_100460514_100460588_100460892_100460937_100461878_100462559_100463303
transcript_10187.known	chr10	-	790	5	FSM	ENSMUSG00000090841.3	ENSMUST00000219554.2	790	5	0	0	0	0	multi-exon	FALSE	canonical	3	2189	junction_3	229.335998046534	14052	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTCTTTCTTTCTTT	8340	False	NA	-5	True	AATAAA	-20	NA	128329628	128326729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128326903_128327927_128328006_128328097_128328272_128328470_128328615_128329407
transcript_10188.known	chr10	-	620	6	FSM	ENSMUSG00000090841.3	ENSMUST00000219100.2	620	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	875.6	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGGGTCTGTGACCTTTCT	7954	False	NA	NA	False	NA	NA	NA	128330014	128328096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128328272_128328470_128328615_128328807_128328915_128329202_128329223_128329407_128329436_128329868
transcript_101881.nic	chrX	-	1055	6	NIC	ENSMUSG00000031310.17	novel	1593	6	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_2	54.6421083048595	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCCTCAGCCTCTCCTT	NA	False	NA	-4	True	NA	NA	NA	100463437	100458538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_100459013_100459366_100459545_100460514_100460582_100460892_100460937_100462400_100462559_100463303
transcript_101882.known	chrX	-	1593	6	FSM	ENSMUSG00000031310.17	ENSMUST00000117637.8	1593	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	47.004680617998	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCCTCAGCCTCTCCTT	NA	False	NA	-4	True	NA	NA	NA	100463447	100458538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_100459013_100459366_100459545_100460514_100460588_100460892_100460937_100461878_100462559_100463303
transcript_101883.known	chrX	-	1502	6	FSM	ENSMUSG00000031310.17	ENSMUST00000118092.8	1502	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	50.7014792683606	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAACCCAGCCTCAGCCTC	NA	False	NA	-9	True	NA	NA	NA	100463822	100458543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_100459013_100459366_100459545_100460514_100460588_100460892_100460937_100461878_100462559_100463764
transcript_101885.nic	chrX	-	1112	6	NIC	ENSMUSG00000031310.17	novel	1593	6	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_2	54.6713819104657	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCCTCAGCCTCTCCTT	NA	False	NA	-4	True	NA	NA	NA	100463488	100458538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_100459013_100459366_100459545_100460514_100460588_100460892_100460937_100462400_100462559_100463303
transcript_101891.nic	chrX	-	914	5	NIC	ENSMUSG00000031310.17	novel	1593	6	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_4	53.4555890436164	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCCTCAGCCTCTCCTT	NA	False	NA	-4	True	NA	NA	NA	100463454	100458538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_100459013_100459366_100459545_100460514_100460582_100460892_100460937_100463303
transcript_101895.nic	chrX	-	920	5	NIC	ENSMUSG00000031310.17	novel	1593	6	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_4	54.2332923581079	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCCTCAGCCTCTCCTT	NA	False	NA	-4	True	NA	NA	NA	100463454	100458538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_100459013_100459366_100459545_100460514_100460588_100460892_100460937_100463303
transcript_10190.known	chr10	-	1026	7	FSM	ENSMUSG00000039824.5	ENSMUST00000026428.4	1026	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.63299316185545	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGGTTTCCGACAGTTTT	3414	False	NA	-10	True	AATAAA	-14	NA	128334554	128330025	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128330353_128330458_128330537_128330922_128331097_128332121_128332266_128332482_128332511_128333069_128333287_128334496
transcript_101900.known	chrX	-	5178	24	FSM	ENSMUSG00000031310.17	ENSMUST00000117901.8	5178	24	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	34.4771368861147	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGCTTTCTCTGGGGGA	NA	False	NA	-2	True	AATAAA	-14	NA	100463404	100447989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_100449410_100449510_100449626_100452082_100452198_100452759_100452912_100453238_100453387_100453662_100453767_100454818_100454966_100455137_100455313_100455450_100455564_100455743_100455901_100455983_100456082_100456717_100456884_100457094_100457268_100457509_100457661_100457780_100457868_100458027_100458144_100458353_100458505_100458793_100459013_100459366_100459545_100459772_100460068_100460514_100460588_100460892_100460937_100461878_100462559_100463303
transcript_101901.known	chrX	-	1750	7	FSM	ENSMUSG00000031310.17	ENSMUST00000119699.8	1750	7	0	0	0	0	multi-exon	FALSE	canonical	2	22	junction_6	44.6819003873182	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAATAAAAGTGAAGGG	NA	False	NA	-29	True	NA	NA	NA	100463970	100458563	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_100459013_100459366_100459545_100459772_100460068_100460514_100460582_100460892_100460937_100461878_100462559_100463933
transcript_101904.known	chrX	+	2562	12	FSM	ENSMUSG00000031311.18	ENSMUST00000033673.7	2562	12	0	0	0	0	multi-exon	FALSE	canonical	3	3075	junction_4	297.011255595496	13005	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	20	True	ATTAAA	-21	NA	100473160	100492197	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
transcript_101905.known	chrX	+	1364	5	FSM	ENSMUSG00000031311.18	ENSMUST00000126019.2	1364	5	0	0	0	0	multi-exon	FALSE	canonical	3	397	junction_1	1520.69496859166	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGCAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	100473340	100486037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_100473369_100474101_100474159_100480814_100480984_100483092_100483287_100485121
transcript_101906.known	chrX	+	345	4	FSM	ENSMUSG00000031311.18	ENSMUST00000148312.2	345	4	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_1	1706.81893851952	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAAATAAACGCCGCCGAT	NA	False	NA	NA	False	NA	NA	NA	100488338	100491309	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_100488424_100488900_100488941_100489724_100489835_100491199
transcript_101907.nnic	chrX	+	804	5	NIC	ENSMUSG00000031312.6	novel	1314	11	NA	NA	-375	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	1.29903810567666	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACGTCTCATCTCTCCTC	991	False	NA	NA	False	AATAAA	-21	NA	100495341	100497147	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_100495451_100495559_100495631_100495720_100495821_100496079_100496194_100496737
transcript_101911.known	chrX	+	3840	23	FSM	ENSMUSG00000034160.14	ENSMUST00000119299.8	3840	23	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	138.801667470395	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACTTAAGACTTTTCAGC	NA	False	NA	NA	False	NA	NA	NA	100683665	100726546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_100683717_100683823_100683929_100686611_100686763_100687552_100687797_100695745_100695815_100699229_100699347_100704857_100704938_100706964_100707161_100707448_100707590_100708249_100708351_100710883_100711038_100711121_100711224_100711585_100711766_100713362_100713522_100713636_100713727_100716053_100716180_100716648_100716820_100716928_100717046_100717147_100717319_100719754_100719908_100722314_100722568_100722829_100722954_100725761
transcript_101914.known	chrX	+	1317	5	FSM	ENSMUSG00000034160.14	ENSMUST00000155713.8	1317	5	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	106.6123233965	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAAAGTC	NA	False	NA	NA	False	NA	NA	NA	100683667	100696483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_100683717_100683823_100683929_100686581_100686763_100687552_100687797_100695745
transcript_101915.nic	chrX	+	1491	5	ISM	ENSMUSG00000034160.14	ENSMUST00000119299.8	3840	23	-185	30046	-185	0	5prime_fragment	FALSE	canonical	3	98	junction_1	113.781589020368	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCAGAAGGACAAAGCTGGT	NA	False	NA	NA	False	TTTAAA	-13	NA	100683480	100696500	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_+_100683717_100683823_100683929_100686611_100686763_100687552_100687797_100695745
transcript_101916.known	chrX	+	1066	5	FSM	ENSMUSG00000034160.14	ENSMUST00000153979.8	1066	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	141.204417423819	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGCTTCTAACTCTTCT	NA	False	NA	NA	False	ATTAAA	-21	NA	100683699	100697924	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_100683929_100686581_100686763_100687552_100687797_100695745_100695815_100697581
transcript_101919.known	chrX	+	3087	4	FSM	ENSMUSG00000034160.14	ENSMUST00000150161.8	3087	4	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_1	65.0743164901996	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTCTCTATGGGCCTG	NA	False	NA	NA	False	GATAAA	-44	NA	100683713	100698192	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_100683929_100686581_100686763_100687552_100687797_100695745
transcript_101920.known	chrX	+	1333	4	FSM	ENSMUSG00000034160.14	ENSMUST00000155792.2	1333	4	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_1	90.0530707724926	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCAGAAGGACAAAGCTGGT	NA	False	NA	NA	False	TTTAAA	-13	NA	100683745	100696500	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_100683929_100686611_100686763_100687552_100687797_100695745
transcript_101923.known	chrX	+	5384	22	FSM	ENSMUSG00000034160.14	ENSMUST00000044475.5	5384	22	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_4	118.587682955494	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTTGGTGTAGTTTGT	NA	False	NA	15	True	AATAAA	-20	NA	100683669	100727957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_100683929_100686581_100686763_100687552_100687797_100695745_100695815_100699229_100699347_100704857_100704938_100706964_100707161_100707448_100707590_100708249_100708351_100710883_100711038_100711121_100711224_100711585_100711766_100713362_100713522_100713636_100713727_100716053_100716180_100716648_100716820_100716928_100717046_100717147_100717319_100719754_100719908_100722314_100722568_100722829_100722954_100725761
transcript_101924.known	chrX	-	1190	7	FSM	ENSMUSG00000045010.15	ENSMUST00000124577.8	1190	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	111.484926734016	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGCCCGGCTCTGAGTCC	NA	False	NA	NA	False	NA	NA	NA	100836869	100833658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_100834130_100834212_100834255_100834440_100834505_100834844_100834891_100835166_100835250_100835786_100835944_100836542
transcript_101927.known	chrX	-	1991	6	FSM	ENSMUSG00000045010.15	ENSMUST00000147742.9	1991	6	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_5	73.271003814606	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100838029	100833953	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_100834130_100834212_100834255_100834844_100834891_100835166_100835250_100835786_100835944_100836542
transcript_101928.nic	chrX	-	2281	6	NIC	ENSMUSG00000045010.15	novel	1991	6	NA	NA	-40	0	intron_retention	FALSE	canonical	3	117	junction_2	83.8035798758024	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100838069	100833953	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_100834130_100834212_100834505_100834844_100834891_100835166_100835250_100835786_100835944_100836542
transcript_10193.known	chr10	-	3981	31	FSM	ENSMUSG00000025366.9	ENSMUST00000026427.8	3981	31	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_22	28.253790306199	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTGGTGCACTGTGTGAA	8319	False	NA	NA	False	AATATA	-21	NA	128361739	128345833	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128346529_128346848_128346899_128347334_128347441_128347523_128347656_128347737_128347837_128347926_128348088_128348195_128348334_128351554_128351642_128351733_128351806_128352013_128352110_128352227_128352318_128352401_128352451_128352544_128352628_128352822_128353000_128353117_128353265_128353483_128353634_128354796_128354884_128355010_128355083_128355296_128355390_128355467_128355555_128355657_128355707_128356141_128356225_128356512_128356690_128356775_128356900_128357482_128357539_128357695_128357786_128357923_128357997_128358117_128358192_128358289_128358425_128358942_128358985_128361332
transcript_101930.nic	chrX	-	2621	5	NIC	ENSMUSG00000045010.15	novel	1991	6	NA	NA	-40	0	intron_retention	FALSE	canonical	3	142	junction_4	69.9052930757035	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100838069	100833953	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_100834130_100834212_100834891_100835166_100835250_100835786_100835944_100836542
transcript_101932.nnic	chrX	+	931	8	NNC	ENSMUSG00000046774.18	novel	1991	7	NA	NA	-139	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	110.314393014341	47	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100838122	100842248	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_100838373_100839575_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841763_100841947_100841990_100842072
transcript_101933.nnic	chrX	+	1074	8	NIC	ENSMUSG00000046774.18	novel	1050	9	NA	NA	-66	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_1	107.73872401816	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100838195	100842248	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_100838373_100839359_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841763_100841947_100841990_100842072
transcript_101951.known	chrX	+	1991	7	FSM	ENSMUSG00000046774.18	ENSMUST00000163399.8	1991	7	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_5	79.7050116924205	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAGCTGTACTTTTGCAA	NA	False	NA	NA	False	NA	NA	NA	100838261	100842244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841763_100841947_100841990_100842072
transcript_101952.known	chrX	+	1940	6	FSM	ENSMUSG00000046774.18	ENSMUST00000151231.10	1940	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	112.716280989039	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100838261	100842248	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841947_100841990_100842072
transcript_101953.known	chrX	-	2017	5	FSM	ENSMUSG00000118638.2	ENSMUST00000239206.2	2017	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.06155281280883	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTTCCCTGTGTTTTGTT	333	False	NA	NA	False	NA	NA	NA	100865583	100861789	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_100862058_100862488_100862535_100862797_100862881_100863345_100863533_100864150
transcript_101963.known	chrX	+	489	4	FSM	ENSMUSG00000079480.4	ENSMUST00000113627.4	489	4	0	0	0	0	multi-exon	FALSE	canonical	3	1046	junction_3	75.7495874576225	5558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAGTGTTTTCTATTTTGT	NA	False	NA	NA	False	AATAAA	-18	NA	101163052	101171275	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_101163171_101165273_101165348_101170622_101170743_101171098
transcript_101966.known	chrX	+	530	4	FSM	ENSMUSG00000079480.4	ENSMUST00000144367.2	530	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	540.53389245161	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTAAGTGTTTTCTATTT	NA	False	NA	NA	False	AATAAA	-15	NA	101163174	101171272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_101163337_101165273_101165348_101170622_101170743_101171098
transcript_101968.known	chrX	-	5302	2	FSM	ENSMUSG00000051220.3	ENSMUST00000056904.3	5302	2	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_1	0	184	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGATTCCGGTTTGTTGTG	NA	False	NA	NA	False	NA	NA	NA	101200697	101185321	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_101190440_101200513
transcript_1020.known	chr1	-	2964	11	FSM	ENSMUSG00000025920.20	ENSMUST00000162007.8	2964	11	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_9	11.3207773584679	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTTTGATTCATATAGTGA	NA	False	NA	NA	False	AATAAA	-18	NA	16589464	16414514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_16416236_16436302_16436364_16439978_16440111_16444897_16445036_16460044_16460258_16462740_16462849_16464274_16464435_16510546_16510683_16533258_16533419_16579565_16579633_16589396
transcript_10200.known	chr10	-	992	3	FSM	ENSMUSG00000039810.12	ENSMUST00000152539.8	992	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	46	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCCCATCTGCCGCGACT	NA	False	NA	NA	False	NA	NA	NA	128383508	128380948	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128381408_128382696_128382761_128383039
transcript_10201.known	chr10	-	3721	3	FSM	ENSMUSG00000039810.12	ENSMUST00000040572.10	3721	3	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_2	17	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTGTTAGGAATATTATTA	NA	False	NA	NA	False	ATTAAA	-15	NA	128383643	128377831	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128381408_128382696_128382761_128383562
transcript_102043.known	chrX	-	975	7	FSM	ENSMUSG00000031320.10	ENSMUST00000033683.8	975	7	0	0	0	0	multi-exon	FALSE	canonical	3	11043	junction_6	2028.67992108716	354985	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTTGCTGTTGCTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	101233000	101228546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899_101231978_101232903
transcript_102044.known	chrX	-	784	2	FSM	ENSMUSG00000031320.10	ENSMUST00000152739.2	784	2	0	0	0	0	multi-exon	FALSE	canonical	3	11043	junction_1	0	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGAATCTCTGTTGGGCT	NA	False	NA	NA	False	TTTAAA	-40	NA	101232942	101231232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_101231978_101232903
transcript_102045.known	chrX	-	576	3	FSM	ENSMUSG00000051159.17	ENSMUST00000130589.2	576	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	102	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTTCAACCTGCATCCTA	NA	False	NA	NA	False	NA	NA	NA	101294381	101291426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_101291615_101292168_101292294_101294118
transcript_102046.known	chrX	-	607	3	FSM	ENSMUSG00000051159.17	ENSMUST00000134887.8	607	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	97.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCAGGCCTACCAGGGGAG	NA	False	NA	NA	False	NA	NA	NA	101294552	101291319	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_101291615_101292168_101292294_101294365
transcript_102047.known	chrX	-	1090	3	FSM	ENSMUSG00000051159.17	ENSMUST00000101336.10	1090	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	78.5	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGTTAACTTGCAAAGA	NA	False	NA	-23	True	AAAAAG	-20	NA	101295458	101291009	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_101291615_101292168_101292294_101295098
transcript_102048.known	chrX	-	901	3	FSM	ENSMUSG00000051159.17	ENSMUST00000050551.10	901	3	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_2	38	1322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGCCTGGGTGTGTTCTT	NA	False	NA	0	True	AATAAA	-20	NA	101295787	101290986	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_101291615_101292168_101292294_101295639
transcript_102052.known	chrX	-	1936	11	FSM	ENSMUSG00000067567.13	ENSMUST00000087916.11	1936	11	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	12.0747670784989	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCGTCCCACCGCTCTGT	NA	False	NA	-1	True	AATAAA	-15	NA	101548965	101328244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_101328775_101351244_101351351_101446190_101446286_101449142_101449316_101471720_101471830_101472369_101472448_101476090_101476204_101541736_101541879_101543427_101543559_101548004_101548058_101548559
transcript_102055.nnic	chrX	-	1572	10	NNC	ENSMUSG00000067567.13	novel	686	7	NA	NA	-47	47575	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	19.2700112437262	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGAGAATACAATTACTAG	NA	False	NA	NA	False	AATAAA	-14	NA	101549012	101401677	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_101401903_101446190_101446286_101449142_101449316_101471720_101471830_101472369_101472448_101476090_101476204_101541736_101541879_101543427_101543559_101548004_101548058_101548559
transcript_102056.nnic	chrX	-	1453	10	NNC	ENSMUSG00000067567.13	novel	686	7	NA	NA	-30	13336	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_1	19.2700112437262	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATGTGTTAATGTCTATTC	NA	False	NA	NA	False	NA	NA	NA	101548782	101435916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_101436253_101446190_101446286_101449142_101449316_101471720_101471830_101472369_101472448_101476090_101476204_101541736_101541879_101543427_101543559_101548004_101548058_101548559
transcript_102059.nnic	chrX	-	903	5	NNC	ENSMUSG00000067567.13	novel	591	3	NA	NA	-47	6535	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	29.0645832586672	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTATTTTTATTTTAT	NA	False	NA	NA	False	AATAAA	-17	NA	101549012	101535226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_101535351_101541736_101541879_101543427_101543559_101548004_101548058_101548559
transcript_102060.nnic	chrX	-	863	5	NNC	ENSMUSG00000067567.13	novel	591	3	NA	NA	-30	4403	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	29.8998327754521	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGTGCACTGTAGTATTT	NA	False	NA	NA	False	TATAAA	-15	NA	101548782	101537358	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_101537673_101541736_101541879_101543427_101543559_101548004_101548058_101548559
transcript_102067.known	chrX	-	337	3	FSM	ENSMUSG00000081443.3	ENSMUST00000122154.3	337	3	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_2	7	270	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTTCTTTGACTGTGTG	3627	False	NA	NA	False	AATAAA	-16	NA	101730578	101729897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_101730044_101730198_101730354_101730542
transcript_102068.known	chrX	-	420	3	FSM	ENSMUSG00000079479.3	ENSMUST00000113610.3	420	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	3	126	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTGACTTCGTGAAAATT	NA	False	NA	NA	False	AATAAA	-22	NA	101751241	101750495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_101750648_101750793_101750958_101751137
transcript_102069.known	chrX	+	1200	7	FSM	ENSMUSG00000073027.11	ENSMUST00000101324.9	1200	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.5723301886761	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCATTTGTCCTGTGATT	3864	False	NA	NA	False	NA	NA	NA	101751470	101758815	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_101751533_101754965_101755124_101755540_101755600_101755900_101756038_101756834_101756896_101757072_101757251_101758270
transcript_102073.known	chrX	+	1611	9	FSM	ENSMUSG00000067562.12	ENSMUST00000118218.8	1611	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	65.1257197656963	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101846568	101853548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_101846761_101846861_101847052_101848305_101848480_101848622_101848775_101849096_101849156_101849476_101849614_101850489_101850554_101850740_101850871_101853035
transcript_102079.nnic	chrX	+	1506	8	NNC	ENSMUSG00000067562.12	novel	1611	9	NA	NA	-57	0	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	44.698993277254	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101846511	101853548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_101846789_101848305_101848480_101848622_101848775_101849096_101849156_101849476_101849614_101850489_101850554_101850740_101850871_101853035
transcript_102081.nnic	chrX	+	1536	8	NNC	ENSMUSG00000067562.12	novel	1611	9	NA	NA	-34	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	56.4623768539724	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101846534	101853548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_101846789_101848252_101848480_101848622_101848775_101849096_101849156_101849476_101849614_101850489_101850554_101850740_101850871_101853035
transcript_102082.nnic	chrX	+	1448	8	NIC	ENSMUSG00000067562.12	novel	1611	9	NA	NA	-27	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_1	52.0670682085782	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101846541	101853548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_101846761_101848305_101848480_101848622_101848775_101849096_101849156_101849476_101849614_101850489_101850554_101850740_101850871_101853035
transcript_102092.known	chrX	-	1611	9	FSM	ENSMUSG00000067561.13	ENSMUST00000120314.8	1611	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	64.8072864344743	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101898222	101891244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_101891758_101893920_101894051_101894237_101894302_101895177_101895315_101895635_101895695_101896016_101896169_101896311_101896486_101897739_101897930_101898030
transcript_102094.nnic	chrX	-	1477	8	NNC	ENSMUSG00000067561.13	novel	1611	9	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_7	44.1518714790442	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101898250	101891244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_101891758_101893920_101894051_101894237_101894302_101895177_101895315_101895635_101895695_101896016_101896169_101896311_101896486_101898002
transcript_102095.nnic	chrX	-	1458	8	NIC	ENSMUSG00000067561.13	novel	1611	9	NA	NA	-37	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_7	51.90218429598	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101898259	101891244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_101891758_101893920_101894051_101894237_101894302_101895177_101895315_101895635_101895695_101896016_101896169_101896311_101896486_101898030
transcript_102097.nnic	chrX	-	1511	8	NNC	ENSMUSG00000067561.13	novel	1611	9	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_7	56.3197866415254	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101898231	101891244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_101891758_101893920_101894051_101894237_101894302_101895177_101895315_101895635_101895695_101896016_101896169_101896311_101896539_101898002
transcript_102110.known	chrX	-	685	4	FSM	ENSMUSG00000031325.16	ENSMUST00000127012.9	685	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	0.816496580927726	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATCTAAGAAGCTACTAAA	NA	False	NA	NA	False	GATAAA	-14	NA	102355388	102273633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_102273781_102276407_102276548_102277627_102277876_102355238
transcript_102114.known	chrX	-	373	3	FSM	ENSMUSG00000031325.16	ENSMUST00000182224.8	373	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	0.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCAAAATCCCGCAGTCAT	NA	False	NA	NA	False	AATGAA	-44	NA	102296653	102273699	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_102273781_102277627_102277876_102296609
transcript_102120.known	chrX	-	2465	1	FSM	ENSMUSG00000082229.2	ENSMUST00000121720.2	2465	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGTGTTAAATGTTTTAA	NA	False	NA	NA	False	AATAAA	-15	NA	102230246	102227781	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_102227800_102230200
transcript_102121.known	chrX	+	1963	3	FSM	ENSMUSG00000031326.3	ENSMUST00000033689.3	1963	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAACTTCCA	NA	False	NA	NA	False	NA	NA	NA	102365003	102374198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_102365662_102371614_102371761_102373039
transcript_102122.known	chrX	+	7375	6	FSM	ENSMUSG00000031327.11	ENSMUST00000116547.3	7375	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	5.41848687365763	174	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTGAACCGTGTGGCTT	NA	False	NA	8	True	AATAAA	-18	NA	102400081	102439698	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_102400496_102409819_102409875_102417204_102417361_102430860_102430918_102431592_102431653_102433065
transcript_102128.known	chrX	+	812	7	FSM	ENSMUSG00000031329.5	ENSMUST00000033691.5	812	7	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	4.2687494916219	240	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCTTTGCGTTTCTGTGT	NA	False	NA	1	True	AATAAA	-10	NA	102458072	102468186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_102458253_102459640_102459677_102460356_102460394_102461814_102461897_102464105_102464207_102465593_102465653_102467869
transcript_102135.nnic	chrX	+	689	2	NNC	ENSMUSG00000085715.3	novel	3263	2	NA	NA	-10	-686	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	20	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCACTGAAAGAAACCACTAG	NA	False	NA	NA	False	NA	NA	NA	102491317	102525326	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_102491561_102524880
transcript_102138.known	chrX	+	3802	3	FSM	ENSMUSG00000097571.10	ENSMUST00000181020.9	3802	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGGGACACTGGCCTGTA	NA	False	NA	NA	False	AATAAA	-14	NA	102537163	102550031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_102537307_102540043_102540137_102546465
transcript_102139.known	chrX	+	1085	1	FSM	ENSMUSG00000031330.9	ENSMUST00000033692.9	1085	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGATGACTTTGATAGCTT	NA	False	NA	NA	False	AATAAA	-16	NA	102674191	102675276	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_102674200_102675300
transcript_102141.known	chrX	-	7439	5	FSM	ENSMUSG00000056537.12	ENSMUST00000121153.8	7439	5	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_4	53.7261575026541	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGCTTTTTCATCCTT	2373	False	NA	-1	True	AATAAA	-16	NA	103024890	103000768	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_103007650_103008856_103008941_103010096_103010287_103022878_103022941_103024668
transcript_102143.known	chrX	-	1762	2	FSM	ENSMUSG00000056537.12	ENSMUST00000135101.2	1762	2	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAAGTAAAAAAAATA	2373	False	NA	NA	False	NA	NA	NA	103024890	103021400	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_103022941_103024668
transcript_102147.known	chrX	-	5667	16	FSM	ENSMUSG00000031333.8	ENSMUST00000033695.6	5667	16	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_7	23.4516997725585	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTGTCTGGTGGAAATCA	9861	False	NA	-2	True	AATAAA	-24	NA	103457452	103324262	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_103327865_103334728_103334837_103338073_103338178_103339436_103339609_103343374_103343505_103343655_103343820_103344376_103344535_103345399_103345575_103346557_103346646_103346734_103346824_103347737_103348007_103348875_103349009_103366939_103367060_103386099_103386187_103388530_103388609_103457262
transcript_102152.known	chrX	+	2304	7	FSM	ENSMUSG00000073016.4	ENSMUST00000087867.6	2304	7	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	1.67497927018682	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGTTTGTATGTGTTCAT	NA	False	NA	NA	False	ATTAAA	-32	NA	103526423	103551096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_103526956_103539341_103539385_103541880_103541951_103543009_103543073_103545350_103545513_103547934_103548034_103549761
transcript_102153.known	chrX	-	5509	12	FSM	ENSMUSG00000033906.6	ENSMUST00000042070.6	5509	12	0	0	0	0	multi-exon	TRUE	canonical	3	93	junction_8	6.78841989185253	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTGTGTCTTTTCTATA	NA	False	NA	NA	False	ATTAAA	-15	NA	103714670	103580574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_103584775_103588433_103588511_103604290_103604395_103607426_103607554_103609307_103609441_103615259_103615381_103616110_103616144_103617774_103617845_103631906_103632028_103641697_103641793_103676189_103676217_103714269
transcript_102161.nnic	chrX	-	491	3	NNC	ENSMUSG00000033906.6	novel	5509	12	NA	NA	-45047	-133935	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGTGGAGCGCCGCACA	3833	False	NA	NA	False	NA	NA	NA	103759717	103714509	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_103714618_103724291_103724365_103759407
transcript_102162.known	chrX	-	2316	1	FSM	ENSMUSG00000031224.7	ENSMUST00000033575.7	2316	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCATGCTTATGTGATCAT	NA	False	NA	NA	False	AATAAA	-17	NA	103900873	103898557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_103898600_103900900
transcript_102168.known	chrX	-	1691	7	FSM	ENSMUSG00000087174.8	ENSMUST00000156974.8	1691	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	48.3482735529983	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCTTTTGTTTGGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	104113652	104082413	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_104083419_104086730_104086911_104087607_104087718_104110364_104110484_104112069_104112235_104113216_104113282_104113605
transcript_102183.known	chrX	-	3287	6	FSM	ENSMUSG00000087174.8	ENSMUST00000140954.8	3287	6	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_2	25.9183332797462	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACAAGAGAAAGAAGAC	NA	False	NA	NA	False	NA	NA	NA	104113730	104085006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_104087718_104091514_104091617_104110364_104110484_104112069_104112235_104113216_104113282_104113605
transcript_102184.known	chrX	-	531	6	FSM	ENSMUSG00000087174.8	ENSMUST00000146227.8	531	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	40.4899987651272	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGCAGTCTACTACTGAAC	NA	False	NA	NA	False	NA	NA	NA	104113714	104087681	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_104087718_104091514_104091617_104110364_104110484_104112069_104112235_104113216_104113282_104113670
transcript_102185.known	chrX	-	709	6	FSM	ENSMUSG00000087174.8	ENSMUST00000144366.8	709	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	33.8904116233486	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTGTGGATTTACATGTA	NA	False	NA	-3	True	AATAAA	-17	NA	104113661	104087408	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_104087718_104091514_104091617_104110364_104110484_104112176_104112235_104113216_104113282_104113605
transcript_10220.known	chr10	-	544	3	FSM	ENSMUSG00000093674.8	ENSMUST00000177163.8	544	3	0	0	0	0	multi-exon	FALSE	canonical	3	15318	junction_2	3514.5	217647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	-18	True	AATAAA	-29	NA	128385022	128383982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128384299_128384526_128384550_128384817
transcript_102201.known	chrX	-	3732	5	FSM	ENSMUSG00000087174.8	ENSMUST00000138460.8	3732	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	38.5940409908058	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATTGAAAATAAAGACA	NA	False	NA	NA	False	NA	NA	NA	104113730	104084459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_104087718_104110364_104110484_104112069_104112235_104113216_104113282_104113605
transcript_102203.nic	chrX	-	686	5	NIC	ENSMUSG00000087174.8	novel	709	6	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	44.3790491110389	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTGTGGATTTACATGTA	NA	False	NA	-3	True	AATAAA	-17	NA	104113740	104087408	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_104087718_104110364_104110484_104112176_104112235_104113216_104113282_104113605
transcript_10221.known	chr10	-	582	4	FSM	ENSMUSG00000093674.8	ENSMUST00000176010.8	582	4	0	0	0	0	multi-exon	FALSE	canonical	3	7075	junction_3	6241.33064516071	967543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	-18	True	AATAAA	-29	NA	128385174	128383982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128384299_128384526_128384550_128384817_128384843_128384956
transcript_102217.nic	chrX	-	567	4	ISM	ENSMUSG00000087174.8	ENSMUST00000147478.8	311	5	-91	532	-10	0	5prime_fragment	FALSE	canonical	3	5	junction_1	55.1180551180827	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTGTGGATTTACATGTA	NA	False	NA	-3	True	AATAAA	-17	NA	104113740	104087408	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_104087718_104112176_104112235_104113216_104113282_104113605
transcript_10222.known	chr10	-	680	3	FSM	ENSMUSG00000093674.8	ENSMUST00000177513.2	680	3	0	0	0	0	multi-exon	FALSE	canonical	3	7075	junction_2	7636	59135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGCTGTTACGTGTTTT	NA	False	NA	-21	True	AATAAA	-26	NA	128385007	128383985	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128384299_128384526_128384843_128384956
transcript_102221.known	chrX	-	659	4	FSM	ENSMUSG00000087174.8	ENSMUST00000136211.2	659	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.942809041582063	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAATAGCAGAAAACAGTTG	NA	False	NA	NA	False	NA	NA	NA	104123215	104118851	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_104118940_104119291_104119466_104121624_104121758_104122951
transcript_102223.known	chrX	-	1887	8	FSM	ENSMUSG00000087174.8	ENSMUST00000154334.8	1887	8	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	49.1934955049954	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATATGACCTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	104113648	104082422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_104083419_104086209_104086424_104086735_104086911_104087607_104087718_104110364_104110484_104112069_104112235_104113216_104113282_104113605
transcript_102225.known	chrX	+	2638	6	FSM	ENSMUSG00000031226.14	ENSMUST00000033577.11	2638	6	0	0	0	0	multi-exon	FALSE	canonical	3	1180	junction_1	116.642359372571	2478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAATAGCTCTTTCCAG	NA	False	NA	NA	False	NA	NA	NA	104123361	104128792	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_104123450_104123559_104123626_104124976_104125037_104125543_104125685_104126299_104126412_104126621
transcript_102226.known	chrX	+	1239	6	FSM	ENSMUSG00000031226.14	ENSMUST00000119477.2	1239	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	564.946723151838	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGGCCAGAGTTCCTTTT	NA	False	NA	5	True	AATAAA	-20	NA	104123366	104160696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_104123450_104123559_104123626_104124976_104125037_104125543_104125685_104126299_104126412_104159919
transcript_102227.known	chrX	+	3550	1	FSM	ENSMUSG00000031227.9	ENSMUST00000033578.7	3550	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTATTCAATAAATATAT	NA	False	NA	NA	False	AATAAA	-32	NA	104163983	104167533	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_104164000_104167500
transcript_102228.known	chrX	-	345	1	FSM	ENSMUSG00000085791.5	ENSMUST00000122265.2	345	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	198	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGAAAGTTTTCCTTTAA	NA	False	NA	NA	False	NA	NA	NA	104322587	104322242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_104322200_104322600
transcript_10223.known	chr10	-	509	3	FSM	ENSMUSG00000093674.8	ENSMUST00000176906.2	509	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	7652	38853	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAACTGCTGTTACGTGT	NA	False	NA	-24	True	AATAAA	-23	NA	128384971	128383988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128384321_128384526_128384550_128384817
transcript_102231.known	chrX	-	1920	11	FSM	ENSMUSG00000031229.17	ENSMUST00000150914.8	1920	11	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_8	93.3439339218141	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAGAAAAAAATACCAAA	NA	False	NA	NA	False	NA	NA	NA	104972976	104920565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104954179_104954250_104955075_104955261_104972564
transcript_10224.known	chr10	-	695	3	FSM	ENSMUSG00000093674.8	ENSMUST00000176184.2	695	3	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_2	10878.5	50651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAAACTGCTGTTACGTG	NA	False	NA	-25	True	AATAAA	-22	NA	128385028	128383989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128384299_128384526_128384841_128384956
transcript_102241.nic	chrX	-	1372	9	NIC	ENSMUSG00000031229.17	novel	1920	11	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_8	72.3134453265781	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAGAAAAAAATACCAAA	NA	False	NA	NA	False	NA	NA	NA	104972212	104920565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104972093
transcript_102242.nic	chrX	-	1698	9	NIC	ENSMUSG00000031229.17	novel	1920	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	69	junction_8	63.7397050510904	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAGAAAAAAATACCAAA	NA	False	NA	NA	False	NA	NA	NA	104973009	104920565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104972564
transcript_10225.known	chr10	-	523	2	FSM	ENSMUSG00000093674.8	ENSMUST00000176966.2	523	2	0	0	0	0	multi-exon	FALSE	canonical	3	7075	junction_1	0	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GCAAAGGAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	128384981	128384344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128384843_128384956
transcript_102250.known	chrX	-	1155	7	FSM	ENSMUSG00000031229.17	ENSMUST00000134381.8	1155	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	100.557888247958	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCCTGTTCTGGTTCTGT	NA	False	NA	NA	False	AAAAAG	-7	NA	104972973	104920845	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_104921180_104921972_104922041_104923514_104923625_104931320_104931446_104932598_104932652_104934522_104934579_104972564
transcript_102252.known	chrX	-	720	5	FSM	ENSMUSG00000031229.17	ENSMUST00000130980.2	720	5	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_4	64.9975961093947	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTAAATGAAAAAGCTGCT	NA	False	NA	NA	False	NA	NA	NA	104973003	104931386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104972564
transcript_102253.known	chrX	-	10275	35	FSM	ENSMUSG00000031229.17	ENSMUST00000113573.8	10275	35	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_34	46.470253163349	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTGTGCTCTTTATTGC	NA	False	NA	-2	True	ATTAAA	-19	NA	104973009	104841220	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_104844063_104844953_104845083_104845586_104845683_104846295_104846422_104847389_104847540_104861637_104861833_104862948_104863127_104864381_104864491_104867314_104867422_104869706_104869861_104874453_104874627_104874800_104874881_104876052_104876184_104879915_104880034_104881844_104882021_104883446_104883585_104889102_104889281_104889400_104889548_104890291_104890402_104891187_104891330_104894642_104894877_104895570_104895674_104896889_104896984_104899463_104899638_104900063_104900225_104911456_104911530_104918165_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104972705
transcript_102254.known	chrX	-	3124	2	FSM	ENSMUSG00000031229.17	ENSMUST00000200471.2	3124	2	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTGTTGAAGCATTTAAT	NA	False	NA	-1	True	AATAAA	-16	NA	104918911	104909151	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_104911530_104918165
transcript_102255.known	chrX	-	1579	6	FSM	ENSMUSG00000031229.17	ENSMUST00000198209.2	1579	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	93.3710876021052	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATTAAGGTTCAAGAGGAT	NA	False	NA	NA	False	TATAAA	-20	NA	104919201	104895608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_104895674_104896889_104896984_104899463_104899638_104900087_104900225_104911456_104911530_104918165
transcript_102256.known	chrX	-	3233	8	FSM	ENSMUSG00000031229.17	ENSMUST00000128968.8	3233	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	94.231802768817	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAGGAAGAATTATCT	NA	False	NA	NA	False	GATAAA	-8	NA	104972972	104918735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_104921180_104921972_104922041_104923514_104923622_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104972705
transcript_102257.known	chrX	-	1716	9	FSM	ENSMUSG00000031229.17	ENSMUST00000134507.8	1716	9	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	95.8315579545694	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAGAAAAAAATACCAAA	NA	False	NA	NA	False	NA	NA	NA	104972956	104920565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_104921180_104921972_104922041_104923514_104923625_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104955075_104955261_104972564
transcript_102259.known	chrX	-	1608	11	FSM	ENSMUSG00000031232.18	ENSMUST00000113566.10	1608	11	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	64.6371410258839	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAGAAAAAAAAAGGAAG	NA	False	NA	NA	False	NA	NA	NA	105055392	105014083	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_105014633_105015041_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
transcript_102264.known	chrX	-	4524	10	FSM	ENSMUSG00000031232.18	ENSMUST00000238718.2	4524	10	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_8	15.5404688745065	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACATGGTTTTTTTATTCT	NA	False	NA	NA	False	AATAAA	-16	NA	105055505	105011689	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
transcript_102269.nic	chrX	-	1121	8	ISM	ENSMUSG00000031232.18	ENSMUST00000139421.3	1059	9	-137	2721	-11	-2721	5prime_fragment	FALSE	canonical	3	195	junction_6	17.4016185031914	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTTTCCCTTTATAGAAA	NA	False	NA	NA	False	AATAAA	-18	NA	105055523	105022945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
transcript_102271.nnic	chrX	-	1149	8	NNC	ENSMUSG00000031232.18	novel	4524	10	NA	NA	-11	-6194	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	81.6523241605303	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACATGGGCAGTCATTCTT	NA	False	NA	NA	False	NA	NA	NA	105055523	105026418	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_105026588_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
transcript_102302.known	chrX	+	180	2	FSM	ENSMUSG00000031231.5	ENSMUST00000152398.2	180	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGCGGACACCTTGCTC	NA	False	NA	NA	False	NA	NA	NA	105059321	105059735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_105059477_105059710
transcript_102303.known	chrX	+	1001	3	FSM	ENSMUSG00000031231.5	ENSMUST00000033582.5	1001	3	0	0	0	0	multi-exon	FALSE	canonical	3	7724	junction_1	851.5	27240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTGGGTTTAAAGTGATAA	NA	False	NA	NA	False	AATAAA	-14	NA	105059305	105066056	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_105059477_105063184_105063310_105065351
transcript_102304.known	chrX	+	526	2	FSM	ENSMUSG00000031231.5	ENSMUST00000155377.2	526	2	0	0	0	0	multi-exon	FALSE	canonical	3	9427	junction_1	0	1708	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTAGGCTTTGTTTTTTTC	NA	False	NA	12	True	AATAAA	-24	NA	105062996	105065564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_105063310_105065351
transcript_102311.known	chrX	+	1825	11	FSM	ENSMUSG00000062070.13	ENSMUST00000081593.13	1825	11	0	0	0	0	multi-exon	FALSE	canonical	3	3907	junction_10	353.61602056468	25949	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTCCTGTCATACTTTG	NA	False	NA	NA	False	AATAAA	-20	NA	105230705	105247305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
transcript_102312.known	chrX	-	2512	8	FSM	ENSMUSG00000047242.15	ENSMUST00000113495.9	2512	8	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_7	5.73211504221111	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCATTAACCTTTCATTTC	NA	False	NA	NA	False	AATAAA	-12	NA	105264764	105250488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_105252264_105253312_105253424_105259732_105259803_105261702_105261838_105261915_105262053_105262501_105262584_105263184_105263305_105264682
transcript_102314.known	chrX	+	4238	3	FSM	ENSMUSG00000049929.8	ENSMUST00000060576.8	4238	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATACTTTGGTCAGTTATG	NA	False	NA	NA	False	AATAAA	-23	NA	105964230	105977506	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_105964596_105967683_105967786_105973735
transcript_102315.known	chrX	-	1744	6	FSM	ENSMUSG00000031239.6	ENSMUST00000033591.6	1744	6	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	8.06473806146238	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCCATTCCCATCTCTAC	NA	False	NA	NA	False	TATAAA	-18	NA	106446982	106440704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_106441586_106441701_106441853_106442376_106442488_106442701_106442900_106443172_106443305_106446711
transcript_102316.known	chrX	-	5842	8	FSM	ENSMUSG00000031242.8	ENSMUST00000120722.2	5842	8	0	0	0	0	multi-exon	TRUE	canonical	3	41	junction_6	7.21958786771044	175	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCTGTACTCTGTAACTA	NA	False	NA	NA	False	AATAAA	-25	NA	106859940	106826356	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_106831460_106831871_106831945_106834341_106834386_106836504_106836613_106836698_106836768_106837113_106837261_106851397_106851496_106859740
transcript_102318.nnic	chrX	+	628	3	NNC	ENSMUSG00000082354.2	novel	820	2	NA	NA	-432	2128	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTATCTGTTTTTATTTG	NA	False	NA	NA	False	AGTAAA	-24	NA	107448861	107452502	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_107448987_107449207_107449378_107452169
transcript_10232.known	chr10	-	2483	12	FSM	ENSMUSG00000025364.14	ENSMUST00000131728.4	2483	12	0	0	0	0	multi-exon	FALSE	canonical	3	1853	junction_11	115.182428067554	9120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGTTGTGTGTTCTCTT	8692	False	NA	-7	True	AATAAA	-12	NA	128401856	128393636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
transcript_10233.known	chr10	-	6016	28	FSM	ENSMUSG00000018166.9	ENSMUST00000082059.7	6016	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	16.414470513838	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTGTGGATTCCTGTC	NA	False	NA	0	True	AATAAA	-21	NA	128425521	128403391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128405764_128405922_128406224_128406804_128406877_128407038_128407228_128407314_128407413_128407513_128407661_128407997_128408074_128408302_128408459_128408627_128408814_128409043_128409143_128409280_128409401_128410207_128410344_128411850_128411905_128412729_128412885_128413072_128413164_128413968_128414102_128414262_128414469_128414870_128414962_128415364_128415439_128417632_128417754_128417858_128417973_128418985_128419128_128419234_128419354_128419505_128419572_128420179_128420306_128420880_128421068_128422008_128422161_128425288
transcript_102331.known	chrX	+	747	4	FSM	ENSMUSG00000086629.9	ENSMUST00000144421.8	747	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.69967317119759	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCAATCTCTATTTTCAAG	NA	False	NA	NA	False	AATAAA	-19	NA	107878107	107930296	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_107878292_107879871_107879962_107915077_107915205_107929950
transcript_102337.nnic	chrX	+	869	4	NIC	ENSMUSG00000086629.9	novel	1005	5	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	5.90668171555645	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTGTTGTAACAGACAATG	NA	False	NA	NA	False	AATAAA	-16	NA	107878257	107930502	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_107878380_107879871_107879962_107901873_107901979_107929950
transcript_102347.nic	chrX	+	1004	3	NIC	ENSMUSG00000086629.9	novel	546	3	NA	NA	-13	1	combination_of_known_junctions	TRUE	canonical	3	8	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGTTGTAACAGACAATGA	NA	False	NA	NA	False	AATAAA	-17	NA	107878249	107930503	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_107878611_107879871_107879962_107929950
transcript_102353.nnic	chrX	+	460	3	NNC	ENSMUSG00000086629.9	novel	546	3	NA	NA	-5	-2167	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	6	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCTAGATTTCAAATCATAA	NA	False	NA	NA	False	AATAAA	-26	NA	107878257	107928122	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_107878380_107879871_107879962_107927874
transcript_102354.nnic	chrX	+	677	3	NNC	ENSMUSG00000086629.9	novel	546	3	NA	NA	-5	-1950	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	6	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGATTTTCCAGTGATCCA	NA	False	NA	NA	False	AATAAA	-16	NA	107878257	107928339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_107878380_107879871_107879962_107927874
transcript_102355.known	chrX	+	546	3	FSM	ENSMUSG00000086629.9	ENSMUST00000131640.8	546	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	2.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTGTCTCCAATCTCTAT	NA	False	NA	NA	False	AATAAA	-12	NA	107878262	107930289	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_107878380_107879871_107879962_107929950
transcript_102357.known	chrX	-	1934	6	FSM	ENSMUSG00000031245.9	ENSMUST00000033597.9	1934	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	41.3424721079908	787	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGTTTGCAATATTTCA	NA	False	NA	1	True	AATAAA	-19	NA	108057010	108048139	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_108049678_108051767_108051903_108054159_108054214_108054462_108054493_108055027_108055052_108056857
transcript_102358.known	chrX	+	2882	4	FSM	ENSMUSG00000031246.15	ENSMUST00000033598.9	2882	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	2.86744175568088	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGATTACTTTTAATTT	NA	False	NA	NA	False	AATAAA	-18	NA	108138970	108206077	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_108139244_108193520_108193707_108197911_108197993_108203735
transcript_102359.nic	chrX	-	4143	24	NIC	ENSMUSG00000025665.17	novel	4170	24	NA	NA	83	0	combination_of_known_junctions	FALSE	canonical	3	110	junction_23	71.6464486948656	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATTTAGTCTTGGTGTAG	NA	False	NA	-7	True	ATTAAA	-30	NA	110373069	110297889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309967_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546_110372799_110372967
transcript_102360.nic	chrX	-	4283	24	NIC	ENSMUSG00000025665.17	novel	4170	24	NA	NA	-42	0	combination_of_known_junctions	FALSE	canonical	3	110	junction_23	62.1628144548264	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATTTAGTCTTGGTGTAG	NA	False	NA	-7	True	ATTAAA	-30	NA	110373194	110297889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309982_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546_110372799_110372967
transcript_102362.known	chrX	-	4135	23	FSM	ENSMUSG00000025665.17	ENSMUST00000113428.9	4135	23	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_4	54.455987232393	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATTTAGTCTTGGTGTAG	NA	False	NA	-7	True	ATTAAA	-30	NA	110372892	110297889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309967_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546
transcript_102363.known	chrX	-	4151	23	FSM	ENSMUSG00000025665.17	ENSMUST00000096348.10	4151	23	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_4	39.3304500040447	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTAGTCTTGGTGTAGT	NA	False	NA	-6	True	ATTAAA	-31	NA	110372892	110297888	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309982_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546
transcript_102365.known	chrX	-	798	7	FSM	ENSMUSG00000025665.17	ENSMUST00000123213.8	798	7	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_6	102.444700529928	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTGGAAGTAAATCATCCC	NA	False	NA	NA	False	NA	NA	NA	110373152	110344055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546_110372799_110372967
transcript_102367.known	chrX	+	1359	9	FSM	ENSMUSG00000025525.13	ENSMUST00000026599.10	1359	9	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_1	40.3205902734571	1975	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGAGCTTTGTTTATTTAT	NA	False	NA	7	True	AATAAA	-20	NA	111221030	111282452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_111221134_111243497_111243603_111255934_111256055_111259497_111259553_111260996_111261096_111263857_111263950_111273853_111273968_111274158_111274268_111281890
transcript_102376.known	chrX	+	783	7	FSM	ENSMUSG00000025525.13	ENSMUST00000113415.2	783	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	195.448771349994	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAAGTGGTAAAATCATAA	NA	False	NA	8	True	AATAAA	-16	NA	111221062	111282127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_111221134_111255934_111256055_111259497_111259553_111260996_111261096_111263857_111263950_111274158_111274268_111281890
transcript_102377.known	chrX	+	2441	3	FSM	ENSMUSG00000025525.13	ENSMUST00000154378.2	2441	3	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_1	58.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCAAAAAAAAAAAAAAGCCT	NA	False	NA	NA	False	NA	NA	NA	111221044	111258181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_111221134_111243497_111243603_111255934
transcript_102378.known	chrX	-	3886	17	FSM	ENSMUSG00000034607.7	ENSMUST00000039887.4	3886	17	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_16	3.09989919190931	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGTATTGTCTTTGTGA	NA	False	NA	NA	False	AATAAA	-11	NA	111608348	111548127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_111550139_111552674_111552790_111554029_111554113_111554943_111555073_111556408_111556529_111556815_111556969_111557756_111557871_111558714_111558808_111565785_111565861_111567148_111567177_111571447_111571579_111573845_111574020_111578730_111578833_111587067_111587149_111593090_111593166_111607866_111608205_111608284
transcript_102379.known	chrX	-	4868	15	FSM	ENSMUSG00000025531.15	ENSMUST00000026607.15	4868	15	0	0	0	0	multi-exon	TRUE	canonical	3	145	junction_7	16.3001189428489	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCACTGTAATGGCTTATT	NA	False	NA	-9	True	AATAAA	-16	NA	112095214	111950289	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_111953333_111957032_111957194_111962758_111962858_111974543_111974641_111979275_111979340_111981613_111981719_111989834_111989913_112019872_112020099_112021625_112021747_112022245_112022363_112025712_112026128_112049032_112049158_112050410_112050484_112069200_112069268_112095137
transcript_102382.known	chrX	-	3386	13	FSM	ENSMUSG00000025531.15	ENSMUST00000135821.8	3386	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	51.3946468245694	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAATGAAAATAAACAT	NA	False	NA	NA	False	NA	NA	NA	112095206	111972227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_111974057_111974543_111974641_111979275_111979340_111981613_111981719_111989834_111989913_112019872_112020099_112021625_112021747_112022245_112022363_112025712_112026128_112049032_112049158_112050410_112050484_112069200_112069268_112095137
transcript_102388.known	chrX	+	2520	13	FSM	ENSMUSG00000025592.18	ENSMUST00000067219.5	2520	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.65148371670111	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCATTTCTCTGAGTTTTT	NA	False	NA	NA	False	AATAAA	-18	NA	112207953	112745590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_112208633_112362154_112362194_112465944_112466058_112549590_112549723_112614405_112614565_112633941_112634115_112659967_112660104_112662516_112662601_112724539_112724689_112724813_112724962_112727319_112727467_112729645_112729712_112745095
transcript_102392.nnic	chrX	+	952	3	NNC	ENSMUSG00000050435.3	novel	743	2	NA	NA	-7260	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	13	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATCAGTCATTTTTTTTTT	NA	False	NA	1	True	AATAAA	-16	NA	113807448	113815638	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_113807624_113814674_113814900_113815086
transcript_102394.known	chrX	+	743	2	FSM	ENSMUSG00000050435.3	ENSMUST00000059509.3	743	2	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	0	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATCAGTCATTTTTTTTTT	NA	False	NA	1	True	AATAAA	-16	NA	113814708	113815638	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_113814900_113815086
transcript_102395.known	chrX	+	743	2	FSM	ENSMUSG00000047079.2	ENSMUST00000062695.2	743	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGTCATTTTCTTTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	113817278	113818207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_113817472_113817657
transcript_102396.known	chrX	-	348	1	FSM	ENSMUSG00000082260.4	ENSMUST00000118664.2	348	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGAAAGTTTTCCTTTAA	NA	False	NA	NA	False	NA	NA	NA	113891014	113890666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_113890700_113891000
transcript_102397.known	chrX	-	2837	1	FSM	ENSMUSG00000055733.7	ENSMUST00000079490.6	2837	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGACTTACCATTTTCT	NA	False	NA	NA	False	AATAAA	-11	NA	121307098	121304261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_121304300_121307100
transcript_102398.nnic	chrX	+	1259	3	NNC	ENSMUSG00000079450.12	novel	3301	3	NA	NA	-84	-23833	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3.5	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGCAGTATGTGTTTATA	NA	False	NA	NA	False	NA	NA	NA	122013107	122028946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_122013335_122027150_122027267_122028030
transcript_102399.known	chrX	+	3301	3	FSM	ENSMUSG00000079450.12	ENSMUST00000113343.8	3301	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	3	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGGTGTTTCCCAGTCGTT	NA	False	NA	NA	False	AATAAA	-16	NA	122013191	122055348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_122013335_122027150_122027267_122052306
transcript_102400.known	chrX	+	1111	3	FSM	ENSMUSG00000079450.12	ENSMUST00000153946.8	1111	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	3.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCTAAGTGTAACTGCTT	NA	False	NA	NA	False	NA	NA	NA	122013231	122056684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_122013335_122027150_122027267_122055792
transcript_102401.known	chrX	+	402	1	FSM	ENSMUSG00000094015.2	ENSMUST00000121168.2	402	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATTTTGGCTCATTAAA	NA	False	NA	NA	False	AAGAAA	-4	NA	122866970	122867372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_122867000_122867400
transcript_102404.known	chrX	-	399	1	FSM	ENSMUSG00000094238.2	ENSMUST00000178427.2	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATTTTGGCTCATTAAA	NA	False	NA	NA	False	AAGAAA	-4	NA	123380054	123379655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_123379700_123380100
transcript_102405.known	chrX	-	399	1	FSM	ENSMUSG00000095017.2	ENSMUST00000179567.2	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATTTTGGCTCATTAAA	NA	False	NA	NA	False	AAGAAA	-4	NA	124031086	124030687	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_124030700_124031100
transcript_102407.known	chrX	-	399	1	FSM	ENSMUSG00000096763.2	ENSMUST00000178365.2	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATTTTGGCTCATTAAA	NA	False	NA	NA	False	AAGAAA	-4	NA	124582854	124582455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_124582500_124582900
transcript_102408.known	chrX	-	399	1	FSM	ENSMUSG00000095499.2	ENSMUST00000179356.2	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATTTTGGCTCATTAAA	NA	False	NA	NA	False	AAGAAA	-4	NA	124765704	124765305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_124765300_124765700
transcript_102409.known	chrX	-	399	1	FSM	ENSMUSG00000096437.2	ENSMUST00000118529.2	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATTTTGGCTCATTAAA	NA	False	NA	NA	False	NA	NA	NA	124894987	124894588	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_124894600_124895000
transcript_102411.known	chrX	-	1765	8	FSM	ENSMUSG00000067377.13	ENSMUST00000087557.12	1765	8	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_3	4.33777898591114	323	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATCGTTTTAATTTTTAGA	NA	False	NA	4	True	AATAAA	-42	NA	132799178	132791816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_132792673_132793410_132793516_132795247_132795332_132795676_132795812_132796183_132796283_132797431_132797507_132797872_132798062_132798956
transcript_102417.known	chrX	+	4502	14	FSM	ENSMUSG00000031256.12	ENSMUST00000033609.9	4502	14	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_8	78.010695670871	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACCCTACTTAGAAATCTT	NA	False	NA	12	True	AATAAA	-12	NA	132959945	132987568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973884_132974027_132974874_132975060_132975261_132975555_132981075_132981187_132981939_132982066_132984980
transcript_102419.known	chrX	+	3661	14	FSM	ENSMUSG00000031256.12	ENSMUST00000113287.8	3661	14	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_8	147.051615138335	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTTCATGATCTGCCTTTA	NA	False	NA	NA	False	AATACA	-13	NA	132959935	132986795	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973962_132974027_132974874_132975060_132975261_132975555_132981075_132981187_132981939_132982066_132984980
transcript_102425.known	chrX	+	2717	11	FSM	ENSMUSG00000031256.12	ENSMUST00000113286.8	2717	11	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_8	82.5556781814552	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAAGTTTTGCTTTTTAA	NA	False	NA	4	True	AATAAA	-19	NA	132959963	132976612	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973884_132974027_132974874_132975060_132975261
transcript_102429.nic	chrX	+	725	4	ISM	ENSMUSG00000031256.12	ENSMUST00000113286.8	2717	11	29	13873	29	494	5prime_fragment	FALSE	canonical	3	713	junction_2	19.2527054375915	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTGTTTCTGTGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	132959992	132962739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442
transcript_102430.known	chrX	-	3128	14	FSM	ENSMUSG00000067369.13	ENSMUST00000113252.8	3128	14	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_12	15.8476474277441	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTCACTATCTCTAGT	NA	False	NA	-10	True	AATAAA	-18	NA	133177669	133123848	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_133125455_133138891_133138992_133139215_133139336_133140827_133140930_133141103_133141319_133141725_133141821_133143763_133143911_133162325_133162397_133163533_133163634_133164475_133164611_133167009_133167065_133168079_133168311_133171258_133171335_133177594
transcript_102437.known	chrX	-	3119	13	FSM	ENSMUSG00000067369.13	ENSMUST00000087541.12	3119	13	0	0	0	0	multi-exon	TRUE	canonical	1	13	junction_4	11.7686022959398	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTATCTCTAGTCCATG	NA	False	NA	-5	True	AATAAA	-23	NA	133177731	133123843	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_133125455_133138891_133138992_133139215_133139336_133140827_133140930_133141103_133141319_133141725_133141821_133143763_133143911_133162325_133162397_133163533_133163634_133164475_133164611_133167009_133167065_133168079_133168311_133177594
transcript_102438.known	chrX	-	822	4	FSM	ENSMUSG00000067369.13	ENSMUST00000087540.4	822	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	24.2624538467705	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCTGCTGTCTCCGCATT	NA	False	NA	-7	True	AGTAAA	-14	NA	133177733	133163236	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_133163634_133167009_133167065_133168079_133168311_133177594
transcript_102439.known	chrX	+	1918	2	FSM	ENSMUSG00000033578.8	ENSMUST00000037687.8	1918	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATGGTGTGGATATGGA	NA	False	NA	6	True	AATAAA	-18	NA	133195973	133206718	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_133196379_133205205
transcript_102442.known	chrX	+	3227	23	FSM	ENSMUSG00000031262.13	ENSMUST00000081064.12	3227	23	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_9	42.2862392872416	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATTTCCGAATTTTTTTT	NA	False	NA	6	True	AATAAA	-17	NA	133208832	133263388	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_133208978_133209314_133209383_133209475_133209597_133210889_133211122_133212739_133212878_133218359_133218479_133218773_133218882_133225509_133225559_133225839_133225887_133236833_133236924_133237259_133237389_133237958_133238121_133238351_133238473_133239502_133239595_133240582_133240701_133241096_133241162_133243824_133243920_133247973_133248110_133249908_133250034_133251815_133251865_133251993_133252213_133261963_133262006_133262631
transcript_102445.known	chrX	+	3085	22	FSM	ENSMUSG00000031262.13	ENSMUST00000101251.8	3085	22	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	51.4515821537341	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGTATTTCCGAATTTTT	NA	False	NA	3	True	AATAAA	-14	NA	133208903	133263385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_133208978_133209475_133209597_133210889_133211122_133212739_133212878_133218359_133218479_133218773_133218882_133225509_133225559_133225839_133225887_133236833_133236924_133237259_133237389_133237958_133238121_133238351_133238473_133239502_133239595_133240582_133240701_133241096_133241162_133243824_133243920_133247973_133248110_133249908_133250034_133251815_133251865_133251993_133252213_133261963_133262006_133262631
transcript_102456.known	chrX	+	1423	7	FSM	ENSMUSG00000000223.14	ENSMUST00000142146.8	1423	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.10554159678513	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGTATTAATTGTGAGCC	NA	False	NA	NA	False	ATTAAA	-16	NA	133324524	133336158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_133324703_133329062_133329227_133331223_133331381_133332279_133332401_133334539_133334809_133335173_133335321_133335771
transcript_102457.known	chrX	-	1933	13	FSM	ENSMUSG00000009596.10	ENSMUST00000009740.9	1933	13	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	4.16999866773227	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACGTCTCTAATTTCT	NA	False	NA	NA	False	NA	NA	NA	133377239	133360866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_133361415_133365048_133365109_133366370_133366484_133366656_133366891_133367272_133367375_133367824_133367898_133368646_133368689_133370864_133370921_133371128_133371259_133372140_133372275_133372779_133372859_133373654_133373717_133376939
transcript_102458.nic	chrX	-	1866	13	NIC	ENSMUSG00000009596.10	novel	1933	13	NA	NA	-41	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_8	5.1010619809343	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACGTCTCTAATTTCT	NA	False	NA	NA	False	NA	NA	NA	133377280	133360866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_133361415_133365048_133365109_133366370_133366484_133366656_133366891_133367272_133367375_133367824_133367898_133368646_133368689_133370864_133370921_133371236_133371259_133372140_133372275_133372779_133372859_133373654_133373717_133376939
transcript_102466.known	chrX	-	1421	2	FSM	ENSMUSG00000048007.5	ENSMUST00000054213.5	1421	2	0	0	0	0	multi-exon	FALSE	canonical	3	1175	junction_1	0	8219	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTGACGAAGAGGCTTT	NA	False	NA	-10	True	AATAAA	-16	NA	133442614	133438004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_133439017_133442205
transcript_102468.known	chrX	-	2540	19	FSM	ENSMUSG00000031264.14	ENSMUST00000033617.13	2540	19	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	2.60104442460436	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTATTTTAATTTATTAC	NA	False	NA	NA	False	AATAAA	-16	NA	133483889	133443084	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_133443557_133446230_133446389_133447460_133447580_133448310_133448376_133450163_133450381_133451055_133451228_133451950_133452026_133455147_133455276_133455437_133455518_133456297_133456353_133457086_133457150_133457536_133457725_133459435_133459504_133459946_133460076_133466345_133466428_133469653_133469723_133473957_133474057_133474665_133474837_133483759
transcript_102474.known	chrX	+	770	4	FSM	ENSMUSG00000079435.10	ENSMUST00000149857.3	770	4	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	5569.45900025806	2838	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATTAAAAGCTTTCAGAAA	NA	False	NA	52	True	NA	NA	NA	133486449	133488782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_133486933_133487260_133487328_133488199_133488323_133488685
transcript_102475.known	chrX	+	452	5	FSM	ENSMUSG00000079435.10	ENSMUST00000170828.2	452	5	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	5056.48450012457	84010	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTCTCCTGTTGAGTGG	NA	False	NA	81	True	ATTAAA	-22	NA	133486438	133488811	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_133486469_133486826_133486933_133487260_133487328_133488199_133488323_133488685
transcript_102476.known	chrX	+	553	2	FSM	ENSMUSG00000079435.10	ENSMUST00000152266.2	553	2	0	0	0	0	multi-exon	FALSE	canonical	3	10431	junction_1	0	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCCTTTGATTGCAGTTG	NA	False	NA	15	True	AATAAA	-14	NA	133487829	133488745	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_133488323_133488685
transcript_102481.known	chrX	-	3015	7	FSM	ENSMUSG00000031266.8	ENSMUST00000239113.2	3015	7	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_5	18.580904176062	362	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAAAATTTCAAATA	NA	False	NA	NA	False	NA	NA	NA	133501754	133488934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_133490877_133491694_133491893_133492813_133492976_133494382_133494475_133495928_133496107_133497023_133497199_133501486
transcript_102484.known	chrX	+	2315	2	FSM	ENSMUSG00000045427.14	ENSMUST00000113203.2	2315	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	1121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGCATAGTTTGATTTTC	NA	False	NA	NA	False	AATAAA	-25	NA	133501973	133507809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_133502083_133505603
transcript_102485.known	chrX	+	2426	3	FSM	ENSMUSG00000045427.14	ENSMUST00000074950.11	2426	3	0	0	0	0	multi-exon	FALSE	canonical	3	597	junction_2	148.5	1732	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAATCTTGCATAGTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	133501927	133507803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_133502083_133503440_133503512_133505603
transcript_102486.known	chrX	+	2364	4	FSM	ENSMUSG00000045427.14	ENSMUST00000059297.6	2364	4	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_3	339.283886377699	1273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAATCTTGCATAGTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	133502034	133507803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_133502083_133503440_133503512_133503666_133503712_133505603
transcript_102488.known	chrX	+	7996	6	FSM	ENSMUSG00000049804.10	ENSMUST00000124226.3	7996	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	2.44948974278318	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAGATATTGTCTTCATT	NA	False	NA	NA	False	AATAAA	-24	NA	133587267	133597506	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_133587387_133587896_133587975_133588765_133588856_133589198_133589282_133589568_133589654_133589965
transcript_10249.known	chr10	-	596	3	FSM	ENSMUSG00000025362.7	ENSMUST00000219591.2	596	3	0	0	0	0	multi-exon	FALSE	canonical	3	15147	junction_1	3128	10478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCATCGGAGTGTGTTTAT	NA	False	NA	-9	True	NA	NA	NA	128462293	128460402	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128460506_128461075_128461207_128461931
transcript_102496.known	chrX	+	2303	6	FSM	ENSMUSG00000033460.15	ENSMUST00000035748.14	2303	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	61.3286230075321	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618737	133622666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_133618800_133619118_133619211_133619474_133619568_133619668_133619742_133620375_133620475_133620782
transcript_102497.nnic	chrX	+	2320	6	NNC	ENSMUSG00000033460.15	novel	2303	6	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	59.4151495832502	240	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618679	133622666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_133618800_133619118_133619211_133619474_133619568_133619668_133619742_133620375_133620475_133620823
transcript_102498.known	chrX	+	2413	6	FSM	ENSMUSG00000033460.15	ENSMUST00000113199.8	2413	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	37.1020215082683	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAAGCACTGTCTTTGT	NA	False	NA	NA	False	AATAAA	-20	NA	133618736	133622659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_133618800_133619118_133619211_133619474_133619568_133619668_133619858_133620375_133620475_133620782
transcript_102499.nnic	chrX	+	2436	6	NNC	ENSMUSG00000033460.15	novel	2413	6	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	30.440762145518	199	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618679	133622666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_133618800_133619118_133619211_133619474_133619568_133619668_133619858_133620375_133620475_133620823
transcript_10250.known	chr10	-	681	4	FSM	ENSMUSG00000025362.7	ENSMUST00000026420.7	681	4	0	0	0	0	multi-exon	FALSE	canonical	3	11844	junction_3	3964.03030036631	101498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGGCATCGGAGTGTGTT	NA	False	NA	-12	True	NA	NA	NA	128462616	128460405	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128460506_128461075_128461207_128461931_128462110_128462344
transcript_102503.known	chrX	+	2228	5	FSM	ENSMUSG00000033460.15	ENSMUST00000113201.8	2228	5	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	55.9955355363265	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAAAAGCACTGTCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	133618711	133622657	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_133618800_133619474_133619568_133619668_133619742_133620375_133620475_133620782
transcript_102504.nnic	chrX	+	2259	5	NNC	ENSMUSG00000033460.15	novel	2303	6	NA	NA	-63	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	54.8925085963467	272	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618648	133622666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_133618800_133619474_133619568_133619668_133619742_133620375_133620475_133620823
transcript_102506.nnic	chrX	+	2375	5	NNC	ENSMUSG00000033460.15	novel	2413	6	NA	NA	-63	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	26.9664142963057	203	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618648	133622666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_133618800_133619474_133619568_133619668_133619858_133620375_133620475_133620823
transcript_102507.known	chrX	+	2179	5	FSM	ENSMUSG00000033460.15	ENSMUST00000113197.2	2179	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	75.7310207246674	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618768	133622666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_133618800_133619118_133619211_133619668_133619742_133620375_133620475_133620782
transcript_102510.known	chrX	+	2085	4	FSM	ENSMUSG00000033460.15	ENSMUST00000113198.8	2085	4	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_3	26.0895892391327	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAAAAGCACTGTCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	133618761	133622657	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_133618800_133619668_133619742_133620375_133620475_133620782
transcript_102511.nnic	chrX	+	2250	4	NNC	ENSMUSG00000033460.15	novel	2179	5	NA	NA	-147	0	at_least_one_novel_splicesite	FALSE	canonical	3	112	junction_3	34.8839345385363	295	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618564	133622666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_133618800_133619668_133619742_133620375_133620475_133620823
transcript_102514.known	chrX	+	2253	4	FSM	ENSMUSG00000033460.15	ENSMUST00000051256.10	2253	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	53.7463177033243	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618718	133622666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_133618800_133619668_133619858_133620375_133620475_133620782
transcript_102515.nnic	chrX	+	2253	4	NNC	ENSMUSG00000033460.15	novel	2253	4	NA	NA	-34	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_2	53.074371299987	198	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618677	133622666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_133618800_133619668_133619858_133620375_133620475_133620823
transcript_102516.known	chrX	-	2024	4	FSM	ENSMUSG00000050394.15	ENSMUST00000052431.12	2024	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	2.05480466765633	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGGGGCACTGGCCTCC	NA	False	NA	NA	False	AATAAA	-28	NA	133652166	133649211	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_133650975_133651299_133651380_133651689_133651783_133652078
transcript_102518.known	chrX	+	3327	5	FSM	ENSMUSG00000049047.12	ENSMUST00000081834.10	3327	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	4.81534007106456	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAATAATAAAGGTTAACA	NA	False	NA	NA	False	NA	NA	NA	133657343	133662174	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_133657480_133658012_133658092_133658480_133658543_133658825_133658896_133659194
transcript_10252.nnic	chr10	-	1027	5	Fusion	ENSMUSG00000118400.2_ENSMUSG00000093674.8	novel	582	4	NA	NA	-90	0	multi-exon	FALSE	non_canonical	0	0	junction_4	8421.22701867133	193	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	9864	False	NA	-18	True	AATAAA	-29	NA	128512608	128383982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr10_-_128384299_128384526_128384550_128384817_128384843_128384956_128384965_128511953
transcript_102521.known	chrX	+	2024	5	FSM	ENSMUSG00000049047.12	ENSMUST00000086880.11	2024	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	7.24568837309472	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACTAGTCTGTCTTTTGG	NA	False	NA	NA	False	AATAAA	-41	NA	133657355	133660855	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_133657480_133657984_133658092_133658480_133658543_133658825_133658896_133659194
transcript_102522.known	chrX	-	3666	6	FSM	ENSMUSG00000033436.14	ENSMUST00000113193.9	3666	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	6.60302960768767	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAAGTTGTTCTGGTGCTT	NA	False	NA	-3	True	AATAAA	-19	NA	133709970	133704895	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_133707763_133708010_133708077_133708202_133708263_133708369_133708475_133708983_133709249_133709667
transcript_102524.known	chrX	-	2375	22	FSM	ENSMUSG00000009941.11	ENSMUST00000113189.8	2375	22	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_3	7.21770310384392	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTATGTCTTGAAGTGCT	NA	False	NA	-2	True	AATAAA	-18	NA	133865503	133845276	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_133845538_133845640_133845702_133850435_133850616_133851095_133851169_133851717_133851761_133851850_133851967_133852078_133852138_133852238_133852347_133852497_133852554_133852635_133852891_133853240_133853278_133855976_133856087_133856257_133856366_133856471_133856561_133856713_133856784_133856913_133856995_133857111_133857217_133857340_133857425_133857798_133857953_133858216_133858320_133862672_133862768_133865376
transcript_102525.known	chrX	-	2393	22	FSM	ENSMUSG00000009941.11	ENSMUST00000010085.4	2393	22	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	6.66632652193486	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTATGTCTTGAAGTGCT	NA	False	NA	-2	True	AATAAA	-18	NA	133865503	133845276	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_133845538_133845640_133845702_133850435_133850634_133851095_133851169_133851717_133851761_133851850_133851967_133852078_133852138_133852238_133852347_133852497_133852554_133852635_133852891_133853240_133853278_133855976_133856087_133856257_133856366_133856471_133856561_133856713_133856784_133856913_133856995_133857111_133857217_133857340_133857425_133857798_133857953_133858216_133858320_133862672_133862768_133865376
transcript_10253.nnic	chr10	-	1001	5	Fusion	ENSMUSG00000118400.2_ENSMUSG00000093674.8	novel	582	4	NA	NA	-90	0	multi-exon	FALSE	non_canonical	0	0	junction_4	8421.22701867133	242	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	9864	False	NA	-18	True	AATAAA	-29	NA	128512608	128383982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr10_-_128384299_128384526_128384550_128384817_128384843_128384956_128384965_128511979
transcript_102537.known	chrX	-	636	6	FSM	ENSMUSG00000085556.2	ENSMUST00000147142.2	636	6	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	8.86791971095815	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCCATTGTTTATTGCTG	1134	False	NA	NA	False	NA	NA	NA	134053345	134023626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_134023744_134044969_134045069_134048327_134048426_134050176_134050266_134051692_134051783_134053202
transcript_102538.nnic	chrX	-	608	5	NIC	ENSMUSG00000085556.2	novel	636	6	NA	NA	-6	64	combination_of_known_splicesites	FALSE	canonical	2	7	junction_2	9.36416040016402	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGGCCCTTTTACTGTCT	1128	False	NA	NA	False	AATACA	-19	NA	134053351	134023562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_134023744_134044969_134045069_134050176_134050266_134051692_134051783_134053202
transcript_102539.known	chrX	-	3698	5	FSM	ENSMUSG00000079432.2	ENSMUST00000113183.2	3698	5	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_3	56.4933624419719	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCCATGAGATTCATTTA	NA	False	NA	NA	False	AGTAAA	-16	NA	134078381	134068372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_134070935_134071511_134072097_134073399_134073700_134077932_134078052_134078249
transcript_102543.known	chrX	+	3677	5	FSM	ENSMUSG00000094004.8	ENSMUST00000113173.8	3677	5	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_2	39.7955713616478	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGTTACTAAAATTTAAGT	NA	False	NA	NA	False	NA	NA	NA	134274032	134283975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_134274160_134274357_134274485_134278675_134278976_134280276_134280862_134281437
transcript_102544.known	chrX	+	3836	5	FSM	ENSMUSG00000094004.8	ENSMUST00000180198.2	3836	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	73.5272058492637	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTTTTATTGGTTCTT	NA	False	NA	NA	False	ATTAAA	-10	NA	134274032	134284142	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_134274160_134274357_134274477_134278675_134278976_134280276_134280862_134281437
transcript_102546.known	chrX	+	3519	5	FSM	ENSMUSG00000096508.8	ENSMUST00000179953.2	3519	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	73.4825659595526	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAGAATGGAGAATTAATGA	NA	False	NA	NA	False	AATAAA	-21	NA	134334583	134344429	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_134334711_134334908_134335028_134339279_134339580_134340880_134341466_134342041
transcript_102547.known	chrX	+	3677	5	FSM	ENSMUSG00000096508.8	ENSMUST00000113172.8	3677	5	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_2	40.2336923485777	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGTTACTAAAATTTAAGT	NA	False	NA	NA	False	NA	NA	NA	134334583	134344579	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_134334711_134334908_134335036_134339279_134339580_134340880_134341466_134342041
transcript_102548.known	chrX	+	3698	5	FSM	ENSMUSG00000054994.3	ENSMUST00000068340.3	3698	5	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_2	53.6516542149448	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCCATGAGATTCATTTA	NA	False	NA	NA	False	AGTAAA	-16	NA	134395336	134405343	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_134395469_134395666_134395786_134400016_134400317_134401619_134402205_134402781
transcript_10255.nnic	chr10	-	1113	5	Fusion	ENSMUSG00000118400.2_ENSMUSG00000093674.8	novel	582	4	NA	NA	-90	0	multi-exon	FALSE	canonical	0	0	junction_4	8421.22701867133	205	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	9864	False	NA	-18	True	AATAAA	-29	NA	128512608	128383982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr10_-_128384299_128384526_128384550_128384817_128384843_128384956_128385005_128511907
transcript_102550.nic	chrX	+	1535	8	NIC	ENSMUSG00000086685.2	novel	636	6	NA	NA	-6	2519	combination_of_known_splicesites	FALSE	canonical	3	6	junction_4	10.2399776785471	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTGGGATGACTTTGGG	NA	False	NA	NA	False	ATTAAA	-18	NA	134420333	134452584	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_134420483_134421903_134421994_134423420_134423510_134425261_134425360_134428618_134428718_134449948_134450249_134450691_134451274_134452456
transcript_102552.known	chrX	+	636	6	FSM	ENSMUSG00000086685.2	ENSMUST00000135491.2	636	6	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_4	12.0266371026983	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCCATTGTTTATTGCTG	NA	False	NA	NA	False	NA	NA	NA	134420339	134450065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_134420483_134421903_134421994_134423420_134423510_134425261_134425360_134428618_134428718_134449948
transcript_102554.known	chrX	-	2233	23	FSM	ENSMUSG00000031410.15	ENSMUST00000113163.8	2233	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	1.12540167301272	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCTGGATTCTTCTTTGC	NA	False	NA	NA	False	AATAAA	-18	NA	134499526	134480303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_134480575_134480703_134480765_134483832_134484016_134484471_134484539_134485101_134485145_134485235_134485352_134485452_134485512_134485645_134485754_134485889_134485946_134486029_134486099_134486514_134486552_134487985_134488096_134488266_134488375_134488481_134488571_134488715_134488786_134488930_134489012_134489121_134489227_134489324_134489409_134489679_134489831_134490065_134490220_134493014_134493045_134494561_134494643_134499426
transcript_102557.known	chrX	-	1776	10	FSM	ENSMUSG00000058252.7	ENSMUST00000078605.7	1776	10	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	2.8588178511708	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCAGTGTCTTTTATGATG	6971	False	NA	NA	False	AATAAA	-20	NA	134594539	134555446	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_134555875_134558185_134558350_134559471_134559654_134559749_134559968_134561192_134561330_134565131_134565353_134566154_134566276_134570064_134570177_134593910_134594046_134594481
transcript_10256.nnic	chr10	-	1108	5	Fusion	ENSMUSG00000118400.2_ENSMUSG00000093674.8	novel	582	4	NA	NA	-90	0	multi-exon	FALSE	canonical	0	0	junction_4	8421.22701867133	176	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	9864	False	NA	-18	True	AATAAA	-29	NA	128512608	128383982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr10_-_128384299_128384526_128384550_128384817_128384843_128384956_128385033_128511940
transcript_102562.known	chrX	-	544	5	FSM	ENSMUSG00000060726.11	ENSMUST00000113154.8	544	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	4.9180788932265	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGGCTTGTTTTTGTAA	NA	False	NA	NA	False	AATAAA	-26	NA	134626010	134619415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_134619503_134620414_134620520_134621315_134621402_134624106_134624186_134625823
transcript_102564.nnic	chrX	-	437	4	NIC	ENSMUSG00000060726.11	novel	544	5	NA	NA	28	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_3	7.58653778449403	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGGCTTGTTTTTGTAA	NA	False	NA	NA	False	AATAAA	-26	NA	134625982	134619415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_134619503_134620414_134620520_134621315_134621402_134625823
transcript_102565.nnic	chrX	-	458	4	NIC	ENSMUSG00000060726.11	novel	544	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	6.59966329107444	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGGCTTGTTTTTGTAA	NA	False	NA	NA	False	AATAAA	-26	NA	134626010	134619415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_134619503_134620414_134620520_134624106_134624186_134625823
transcript_102567.known	chrX	-	299	3	FSM	ENSMUSG00000060726.11	ENSMUST00000073674.3	299	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	1	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGGCTTGTTTTTGTAA	NA	False	NA	NA	False	AATAAA	-26	NA	134621422	134619415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_134619503_134620414_134620520_134621315
transcript_102569.nnic	chrX	+	1047	9	NNC	ENSMUSG00000084330.2	novel	434	5	NA	NA	-2327	5366	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	4.05431868505671	18	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTGTCCTGAGTTGCAC	NA	False	NA	NA	False	AATAAA	-13	NA	134625419	134635589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_134625674_134627458_134627605_134628012_134628123_134628832_134628921_134629024_134629068_134629488_134629566_134633679_134633709_134635168_134635227_134635347
transcript_10257.nnic	chr10	-	1149	5	Fusion	ENSMUSG00000118400.2_ENSMUSG00000093674.8	novel	582	4	NA	NA	-90	0	multi-exon	FALSE	canonical	0	0	junction_4	8421.22701867133	182	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	9864	False	NA	-18	True	AATAAA	-29	NA	128512608	128383982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr10_-_128384299_128384526_128384550_128384817_128384843_128384956_128385074_128511940
transcript_102574.nnic	chrX	+	1018	8	NNC	ENSMUSG00000084330.2	novel	434	5	NA	NA	-2327	5366	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3.95381500088516	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTGTCCTGAGTTGCAC	NA	False	NA	NA	False	AATAAA	-13	NA	134625419	134635589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_134625674_134627458_134627605_134628012_134628123_134628832_134628921_134629024_134629068_134629488_134629566_134635168_134635227_134635347
transcript_102578.nnic	chrX	+	887	8	NNC	ENSMUSG00000084330.2	novel	434	5	NA	NA	-2313	5366	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3.95897327444315	16	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTGTCCTGAGTTGCAC	NA	False	NA	NA	False	AATAAA	-13	NA	134625433	134635589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_134625674_134628012_134628123_134628832_134628921_134629024_134629068_134629488_134629566_134633679_134633709_134635168_134635227_134635347
transcript_10258.nnic	chr10	-	1143	5	Fusion	ENSMUSG00000118400.2_ENSMUSG00000093674.8	novel	582	4	NA	NA	-90	0	multi-exon	FALSE	non_canonical	0	0	junction_4	8421.22701867133	177	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	9864	False	NA	-18	True	AATAAA	-29	NA	128512608	128383982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr10_-_128384299_128384526_128384550_128384817_128384843_128384956_128385087_128511959
transcript_10259.nnic	chr10	-	1135	5	Fusion	ENSMUSG00000118400.2_ENSMUSG00000093674.8	novel	582	4	NA	NA	-90	0	multi-exon	FALSE	non_canonical	0	0	junction_4	8421.22701867133	182	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	9864	False	NA	-18	True	AATAAA	-29	NA	128512608	128383982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr10_-_128384299_128384526_128384550_128384817_128384843_128384956_128385087_128511967
transcript_102599.nnic	chrX	+	951	7	NNC	ENSMUSG00000043384.16	novel	837	6	NA	NA	-63	0	at_least_one_novel_splicesite	TRUE	canonical	2	3	junction_4	42.1521714215953	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAATAGATTCTTCTCTC	NA	False	NA	NA	False	TTTAAA	-17	NA	134643418	134662739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_134643728_134644311_134644364_134645247_134645325_134649404_134649532_134651284_134651336_134652693_134652767_134662477
transcript_102602.known	chrX	+	3736	7	FSM	ENSMUSG00000072966.12	ENSMUST00000113136.8	3736	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	54.6669207311169	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATGACCCTTCTTCACT	NA	False	NA	NA	False	AATAAA	-20	NA	134739804	134745475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_134739998_134740531_134740622_134741141_134741219_134741367_134741440_134741601_134741674_134741969_134742053_134742326
transcript_102604.nnic	chrX	+	773	7	NNC	ENSMUSG00000072964.15	novel	2812	5	NA	NA	-31	37811	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	96.3027633156091	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTTCTGTGGACACATG	NA	False	NA	NA	False	NA	NA	NA	134786568	134829641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_134786837_134787593_134787676_134788009_134788067_134789120_134789229_134827575_134827638_134828799_134828865_134829510
transcript_102605.known	chrX	+	837	6	FSM	ENSMUSG00000043384.16	ENSMUST00000149595.8	837	6	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_5	28.5629130167075	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAATAGATTCTTCTCTC	NA	False	NA	NA	False	TTTAAA	-17	NA	134643481	134662739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_134643728_134644311_134644364_134645247_134645325_134649404_134649532_134652693_134652767_134662477
transcript_102609.nic	chrX	+	922	6	NIC	ENSMUSG00000043384.16	novel	837	6	NA	NA	-56	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	15.9549365401433	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAATAGATTCTTCTCTC	NA	False	NA	NA	False	TTTAAA	-17	NA	134643425	134662739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_134643728_134644190_134644272_134645247_134645325_134649404_134649532_134652693_134652767_134662477
transcript_102617.nic	chrX	+	834	5	NIC	ENSMUSG00000043384.16	novel	837	6	NA	NA	-49	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	13.3299474867683	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAATAGATTCTTCTCTC	NA	False	NA	NA	False	TTTAAA	-17	NA	134643432	134662739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_134643728_134645247_134645325_134649404_134649532_134652693_134652767_134662477
transcript_10262.nnic	chr10	-	995	4	Fusion	ENSMUSG00000118400.2_ENSMUSG00000093674.8	novel	582	4	NA	NA	-90	0	multi-exon	FALSE	non_canonical	0	0	junction_3	9329.97781347844	175	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	9864	False	NA	-18	True	AATAAA	-29	NA	128512608	128383982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr10_-_128384299_128384526_128384550_128384817_128384843_128511977
transcript_102622.known	chrX	+	1058	5	FSM	ENSMUSG00000072964.15	ENSMUST00000148374.8	1058	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	89.3168517134365	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCTAGATCCACACGTAAA	NA	False	NA	NA	False	AGTAAA	-39	NA	134786601	134790075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_134786837_134787593_134787676_134788009_134788067_134789120_134789229_134789499
transcript_102624.known	chrX	+	2779	4	FSM	ENSMUSG00000072969.3	ENSMUST00000096321.3	2779	4	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_3	8.05536398239638	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACATTGTTCCAGTTC	NA	False	NA	NA	False	AATAAA	-19	NA	134643481	134648071	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_134643728_134644311_134644364_134645247_134645325_134645667
transcript_102627.nic	chrX	+	2864	4	NIC	ENSMUSG00000072969.3	novel	2779	4	NA	NA	-56	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_1	31.6789449880446	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACATTGTTCCAGTTC	NA	False	NA	NA	False	AATAAA	-19	NA	134643425	134648071	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_134643728_134644190_134644272_134645247_134645325_134645667
transcript_102630.nic	chrX	+	2776	3	NIC	ENSMUSG00000072969.3	novel	2779	4	NA	NA	-49	0	combination_of_known_splicesites	FALSE	canonical	3	29	junction_1	31	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACATTGTTCCAGTTC	NA	False	NA	NA	False	AATAAA	-19	NA	134643432	134648071	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_134643728_134645247_134645325_134645667
transcript_102632.known	chrX	+	2329	2	FSM	ENSMUSG00000072969.3	ENSMUST00000128847.2	2329	2	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAAAGATAAGA	NA	False	NA	NA	False	NA	NA	NA	134643483	134646155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_134645325_134645667
transcript_102633.known	chrX	+	1532	1	FSM	ENSMUSG00000048040.9	ENSMUST00000058119.9	1532	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	511	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGTAGGTCCATTATTT	NA	False	NA	20	True	AATAAA	-17	NA	134894572	134896104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_134894600_134896100
transcript_102634.known	chrX	+	1580	1	FSM	ENSMUSG00000048355.3	ENSMUST00000057625.3	1580	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	585	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTTTGCTTCCTTTAT	NA	False	NA	22	True	AATAGA	-16	NA	134934115	134935695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_134934100_134935700
transcript_102642.known	chrX	-	903	3	FSM	ENSMUSG00000042750.8	ENSMUST00000049130.8	903	3	0	0	0	0	multi-exon	FALSE	canonical	3	901	junction_2	34	10775	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAGTAGTTCTTTAAAGG	4156	False	NA	0	True	AATAAA	-18	NA	134968985	134967312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_134967957_134968348_134968422_134968799
transcript_102645.nnic	chrX	-	3005	20	NNC	ENSMUSG00000057000.13	novel	2978	19	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_19	16.3524206785987	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGTGTTTATATGTATG	NA	False	NA	NA	False	AATAAA	-25	NA	134985996	134972847	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_134974063_134974170_134974232_134974604_134974779_134975448_134975522_134976083_134976127_134976232_134976349_134976579_134976639_134976756_134976865_134977009_134977066_134977135_134977205_134977484_134977522_134978944_134979055_134979529_134979619_134979739_134979810_134979920_134979999_134980109_134980215_134980308_134980393_134981370_134981525_134981712_134981866_134985845
transcript_102652.known	chrX	-	2978	19	FSM	ENSMUSG00000057000.13	ENSMUST00000080929.13	2978	19	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_14	17.7173452014588	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGTGTTTATATGTATG	NA	False	NA	NA	False	AATAAA	-25	NA	134986004	134972847	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_134974063_134974170_134974232_134974604_134974779_134975448_134975522_134976083_134976127_134976232_134976349_134976579_134976639_134976756_134976865_134977009_134977066_134977135_134977205_134977484_134977522_134978944_134979055_134979529_134979619_134979739_134979846_134980109_134980215_134980308_134980393_134981370_134981525_134981712_134981873_134985845
transcript_10266.known	chr10	-	3180	6	FSM	ENSMUSG00000000711.4	ENSMUST00000000727.4	3180	6	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_5	17.0528589978338	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCACTGGACTGTTGTTTT	NA	False	NA	NA	False	AGTAAA	-16	NA	128532133	128513043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128515515_128517254_128517349_128518692_128518816_128519063_128519216_128522616_128522878_128532054
transcript_102662.known	chrX	+	837	3	FSM	ENSMUSG00000047844.4	ENSMUST00000116527.2	837	3	0	0	0	0	multi-exon	FALSE	canonical	3	2369	junction_2	964	36319	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGCTCAGTCATCTTCT	NA	False	NA	NA	False	AATAAA	-17	NA	135039744	135041192	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_135039916_135040271_135040349_135040603
transcript_102666.known	chrX	-	1250	3	FSM	ENSMUSG00000051579.11	ENSMUST00000060101.10	1250	3	0	0	0	0	multi-exon	FALSE	canonical	3	703	junction_2	29	4573	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTGGTTAAGACTTGGTC	NA	False	NA	NA	False	NA	NA	NA	135073091	135070829	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_135071799_135072384_135072455_135072880
transcript_102667.known	chrX	-	1044	3	FSM	ENSMUSG00000054034.11	ENSMUST00000066819.11	1044	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0.5	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCCAGTATCAGTCCATTT	NA	False	NA	NA	False	NA	NA	NA	135104625	135101696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_135102563_135103133_135103202_135104515
transcript_10267.known	chr10	-	1629	4	FSM	ENSMUSG00000000711.4	ENSMUST00000220593.2	1629	4	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_3	13.5728487143349	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAGAAAAAAAAAAGAAA	NA	False	NA	NA	False	AATAAA	-3	NA	128532126	128517671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128518816_128519063_128519216_128522616_128522878_128532054
transcript_102672.known	chrX	+	453	4	FSM	ENSMUSG00000079428.9	ENSMUST00000126811.8	453	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.43650214343336	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTCAGTCTCTTGAAGAAT	NA	False	NA	NA	False	NA	NA	NA	135115527	135126136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_135115753_135116151_135116173_135125650_135125722_135126000
transcript_102688.known	chrX	-	718	2	FSM	ENSMUSG00000050071.9	ENSMUST00000113120.2	718	2	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_1	0	5078	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTCTGTACTCATCTTTT	NA	False	NA	-3	True	AATAAA	-16	NA	135116192	135114721	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_135115333_135116085
transcript_102689.known	chrX	-	866	3	FSM	ENSMUSG00000050071.9	ENSMUST00000058125.9	866	3	0	0	0	0	multi-exon	FALSE	canonical	3	4595	junction_1	588.5	72191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTGTACTCATCTTTTC	NA	False	NA	-2	True	AATAAA	-17	NA	135116262	135114720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_135115333_135115652_135115730_135116085
transcript_102690.known	chrX	-	754	3	FSM	ENSMUSG00000050071.9	ENSMUST00000113118.2	754	3	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_1	2702.5	1369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTACCTATTGTGAACCTA	NA	False	NA	-43	True	NA	NA	NA	135116233	135114761	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_135115333_135115694_135115730_135116085
transcript_102694.known	chrX	+	1019	3	FSM	ENSMUSG00000042712.11	ENSMUST00000048687.11	1019	3	0	0	0	0	multi-exon	FALSE	canonical	3	2732	junction_2	36	18395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAACAGCCCATCAATTTA	NA	False	NA	8	True	AATAAA	-24	NA	135145827	135147888	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_135145977_135146449_135146516_135147084
transcript_102695.known	chrX	+	888	2	FSM	ENSMUSG00000042712.11	ENSMUST00000113115.2	888	2	0	0	0	0	multi-exon	FALSE	canonical	3	2732	junction_1	0	1117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAACAGCCCATCAATTTA	NA	False	NA	8	True	AATAAA	-24	NA	135146431	135147888	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_135146516_135147084
transcript_10270.known	chr10	-	2834	24	FSM	ENSMUSG00000025357.9	ENSMUST00000026414.9	2834	24	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_14	14.5196561901106	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTCCCGCAAGGTTCTGA	9991	False	NA	-10	True	AATAAA	-16	NA	128579944	128556002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128556376_128556585_128556647_128556820_128556942_128557046_128557246_128558322_128558414_128559053_128559119_128559387_128559549_128563936_128564027_128564124_128564211_128565467_128565540_128565743_128565818_128566059_128566129_128566473_128566573_128566936_128567057_128567192_128567282_128568851_128568967_128569133_128569254_128569433_128569509_128569956_128570007_128571699_128571778_128572009_128572146_128572513_128572588_128572877_128573014_128579664
transcript_102708.known	chrX	+	766	2	FSM	ENSMUSG00000046432.13	ENSMUST00000113113.2	766	2	0	0	0	0	multi-exon	FALSE	canonical	3	4289	junction_1	0	2696	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTGTCCTTAAAGCAT	NA	False	NA	NA	False	AATAAA	-16	NA	135171523	135172669	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_135171632_135172011
transcript_102709.known	chrX	+	930	3	FSM	ENSMUSG00000046432.13	ENSMUST00000053540.11	930	3	0	0	0	0	multi-exon	FALSE	canonical	3	4289	junction_2	392	16210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTGAAATTCAACAGTATT	NA	False	NA	NA	False	AATAAA	-32	NA	135171009	135172727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_135171151_135171558_135171632_135172011
transcript_102710.known	chrX	+	826	3	FSM	ENSMUSG00000046432.13	ENSMUST00000113112.2	826	3	0	0	0	0	multi-exon	FALSE	canonical	3	533	junction_2	2270	3774	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGCCACAAGAACTCTGA	NA	False	NA	NA	False	AATAAA	-18	NA	135171053	135172713	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_135171151_135171558_135171632_135172057
transcript_102712.known	chrX	+	1116	3	FSM	ENSMUSG00000044550.12	ENSMUST00000060904.11	1116	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTATGGTATTGGCCTGTT	NA	False	NA	5	True	AATAAA	-19	NA	135567123	135569127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_135567305_135567872_135567940_135568259
transcript_102713.known	chrX	+	2803	2	FSM	ENSMUSG00000049536.6	ENSMUST00000055104.6	2803	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTACTATAACAAGTATGC	NA	False	NA	NA	False	AATAAA	-21	NA	135608730	135612227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_135608838_135609531
transcript_102722.known	chrX	-	1926	4	FSM	ENSMUSG00000031422.17	ENSMUST00000166930.8	1926	4	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	1454.90228766975	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAATGTGTGGTG	NA	False	NA	NA	False	AATAAA	-23	NA	135641904	135633701	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135641694
transcript_102723.known	chrX	-	1996	4	FSM	ENSMUSG00000031422.17	ENSMUST00000033797.13	1996	4	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_3	1439.93989072075	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGTGTTCTTTTTATG	NA	False	NA	NA	False	AATAAA	-34	NA	135642410	135633690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135642141
transcript_102724.known	chrX	-	462	4	FSM	ENSMUSG00000031422.17	ENSMUST00000152150.8	462	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	1452.09664508485	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGGTCGCTCTGCTGAGA	NA	False	NA	NA	False	NA	NA	NA	135643667	135635050	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135643572
transcript_102725.known	chrX	-	1825	4	FSM	ENSMUSG00000031422.17	ENSMUST00000113097.8	1825	4	0	0	0	0	multi-exon	TRUE	canonical	3	47	junction_3	1449.75867723639	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGTGTTCTTTTTATG	NA	False	NA	NA	False	AATAAA	-34	NA	135644439	135633690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135644341
transcript_102727.known	chrX	-	384	3	FSM	ENSMUSG00000031422.17	ENSMUST00000136650.8	384	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	13	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGGTTCTGTGCGGAAGAC	NA	False	NA	NA	False	NA	NA	NA	135643638	135635022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_135635251_135640553_135640644_135643572
transcript_102731.known	chrX	-	1859	4	FSM	ENSMUSG00000031422.17	ENSMUST00000080411.13	1859	4	0	0	0	0	multi-exon	FALSE	canonical	3	2872	junction_1	198.526236721162	1821	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAATGTGTGGTG	NA	False	NA	NA	False	AATAAA	-23	NA	135642101	135633701	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135641958
transcript_102732.known	chrX	+	3201	10	FSM	ENSMUSG00000087368.8	ENSMUST00000134066.8	3201	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	8.4648875354404	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAAATGAGTGTCATT	NA	False	NA	NA	False	AATAAA	-16	NA	135643724	135704104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_135645458_135648071_135648198_135657242_135657370_135658849_135658946_135659308_135659508_135660604_135660668_135661166_135661325_135662739_135662838_135689269_135689367_135703600
transcript_102733.known	chrX	-	1720	3	FSM	ENSMUSG00000031422.17	ENSMUST00000166478.8	1720	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1436	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAATGTGTGGTG	NA	False	NA	NA	False	AATAAA	-23	NA	135644435	135633701	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_135635251_135636294_135636372_135644341
transcript_102734.known	chrX	+	2540	7	FSM	ENSMUSG00000031425.16	ENSMUST00000113085.2	2540	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_5	2.35702260395516	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	135723538	135738547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_135723667_135731819_135732007_135732701_135732859_135734016_135734186_135734903_135734978_135735847_135735914_135736788
transcript_102735.known	chrX	+	1052	1	FSM	ENSMUSG00000048155.5	ENSMUST00000059808.5	1052	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTTTCTGCTAGTTCAT	NA	False	NA	NA	False	AATAAA	-21	NA	135828073	135829125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_135828100_135829100
transcript_102739.known	chrX	-	816	4	FSM	ENSMUSG00000072955.15	ENSMUST00000127404.8	816	4	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	61.5918465022405	389	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTTGAGCAGATTGCACA	NA	False	NA	NA	False	AATAAA	-17	NA	135877618	135855736	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_135856232_135857483_135857589_135876146_135876252_135877507
transcript_102747.known	chrX	-	439	3	FSM	ENSMUSG00000089768.3	ENSMUST00000113071.2	439	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	50	260	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGTGTAACTTCCTTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	135877623	135874770	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_135874989_135876146_135876252_135877507
transcript_102750.known	chrX	-	450	3	FSM	ENSMUSG00000089996.7	ENSMUST00000069803.5	450	3	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_2	19	1595	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGTGTAACTTCCTTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	135858774	135856013	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_135856232_135857483_135857589_135858647
transcript_102752.known	chrX	-	1737	7	FSM	ENSMUSG00000044348.15	ENSMUST00000125747.8	1737	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	13.5359603361646	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGAGATTATCCCTAGTT	NA	False	NA	NA	False	NA	NA	NA	135938781	135903530	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_135904559_135916005_135916132_135916997_135917089_135928738_135928904_135930774_135930849_135933099_135933250_135938678
transcript_102753.known	chrX	-	1740	7	FSM	ENSMUSG00000044348.15	ENSMUST00000123516.8	1740	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	9.36304793679209	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGAGAGATTATCCCTAGT	NA	False	NA	NA	False	NA	NA	NA	135939021	135903531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_135904559_135916005_135916132_135916997_135917089_135928738_135928904_135930774_135930849_135933099_135933250_135938914
transcript_102754.known	chrX	-	3440	7	FSM	ENSMUSG00000044348.15	ENSMUST00000145842.8	3440	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	12.9871731591854	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATGTGAGAGTTTAAATT	NA	False	NA	NA	False	ATTAAA	-16	NA	135939051	135901803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_135904559_135916005_135916132_135916997_135917089_135928738_135928904_135930774_135930849_135933099_135933250_135938972
transcript_102758.nnic	chrX	-	1700	6	NIC	ENSMUSG00000044348.15	novel	1740	7	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_4	11.7813411800185	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGAGATTATCCCTAGTT	NA	False	NA	NA	False	NA	NA	NA	135939054	135903530	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_135904559_135916005_135916132_135916997_135917089_135928738_135928904_135933099_135933250_135938914
transcript_102764.known	chrX	+	2045	4	FSM	ENSMUSG00000031428.12	ENSMUST00000101227.3	2045	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.942809041582063	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAGTGTGCATTACCTGA	7905	False	NA	NA	False	ATTAAA	-11	NA	135893907	135896865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_135894154_135894455_135894511_135894679_135894820_135895261
transcript_102765.known	chrX	+	2259	4	FSM	ENSMUSG00000031428.12	ENSMUST00000113067.8	2259	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.816496580927726	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGGCAGGGGTGTTCTATT	7901	False	NA	7	True	AATAAA	-23	NA	135893903	135897127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_135894102_135894455_135894511_135894679_135894820_135895261
transcript_102769.known	chrX	-	218	2	FSM	ENSMUSG00000044348.15	ENSMUST00000140615.2	218	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTTGTATGCTGTTGCA	NA	False	NA	NA	False	NA	NA	NA	135938757	135933152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_135933250_135938636
transcript_102770.known	chrX	-	843	2	FSM	ENSMUSG00000044348.15	ENSMUST00000132171.2	843	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGTAAAAAGT	NA	False	NA	NA	False	AGTAAA	-7	NA	135939051	135932543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_135933250_135938914
transcript_102771.known	chrX	+	8299	6	FSM	ENSMUSG00000042595.8	ENSMUST00000047852.8	8299	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	9.32523458149981	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCATGTGTGTGTTTCTT	NA	False	NA	NA	False	AATAAA	-24	NA	135950342	135983252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_135950819_135963406_135963627_135972247_135972398_135972762_135972925_135974637_135974905_135976228
transcript_102775.known	chrX	-	1600	5	FSM	ENSMUSG00000023443.14	ENSMUST00000074698.3	1600	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	18.0052075800308	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGGCTTTGAGAGTTATA	NA	False	NA	-1	True	AATAAA	-18	NA	136021075	136016145	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_136016755_136018006_136018053_136019115_136019552_136020319_136020446_136020692
transcript_10278.known	chr10	-	2406	8	FSM	ENSMUSG00000025358.17	ENSMUST00000026416.15	2406	8	0	0	0	0	multi-exon	FALSE	canonical	3	682	junction_2	218.467295455575	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAGAGTGAATCTCTTT	8248	False	NA	-21	True	ATTAAA	-15	NA	128540899	128533812	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128535080_128535340_128535545_128535844_128535989_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
transcript_102780.known	chrX	-	1692	4	FSM	ENSMUSG00000023443.14	ENSMUST00000113066.9	1692	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	6.23609564462324	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGGCTTTGAGAGTTATA	NA	False	NA	-1	True	AATAAA	-18	NA	136020920	136016145	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_136016755_136018006_136018053_136019115_136019552_136020319
transcript_102781.known	chrX	+	1026	2	FSM	ENSMUSG00000042525.6	ENSMUST00000113046.2	1026	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATAAATGGGTGATGGTG	NA	False	NA	NA	False	AATAAA	-12	NA	138079976	138081758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_138080811_138081566
transcript_102784.nnic	chrX	-	947	4	NNC	ENSMUSG00000086807.9	novel	3511	20	NA	NA	-46	1261	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6.18241233033047	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTACTGTTTATATATGAA	NA	False	NA	NA	False	AATAAA	-20	NA	138258533	138246978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_138247568_138255752_138255851_138257038_138257123_138258357
transcript_102787.known	chrX	-	712	4	FSM	ENSMUSG00000086807.9	ENSMUST00000126591.2	712	4	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	6.59966329107444	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTCCAGTTTGAGCTG	NA	False	NA	NA	False	AATAAA	-12	NA	138258487	138248239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_138248639_138255751_138255851_138257038_138257123_138258357
transcript_102788.nnic	chrX	-	849	3	NNC	ENSMUSG00000086807.9	novel	3511	20	NA	NA	-32	1261	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTACTGTTTATATATGAA	NA	False	NA	NA	False	AATAAA	-20	NA	138258519	138246978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_138247568_138255752_138255851_138258357
transcript_1028.known	chr1	-	1151	5	FSM	ENSMUSG00000025920.20	ENSMUST00000115359.10	1151	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	33.2217925464596	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGTTTGTTGTTTATTG	NA	False	NA	NA	False	NA	NA	NA	16589484	16529938	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_16530644_16533258_16533419_16556243_16556375_16579565_16579633_16589396
transcript_102802.known	chrX	+	1178	3	FSM	ENSMUSG00000051257.4	ENSMUST00000054534.4	1178	3	0	0	0	0	multi-exon	FALSE	canonical	3	2592	junction_2	198.5	17350	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTGTTTCACGTTAACGT	NA	False	NA	20	True	AATAAA	-21	NA	138234431	138238918	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_138235157_138237570_138237800_138238694
transcript_102818.nnic	chrX	-	2260	3	Fusion	ENSMUSG00000082018.3_ENSMUSG00000098559.3	novel	1004	2	NA	NA	-23	200	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTTCACAAAAGTCTAGAG	NA	False	NA	NA	False	AATAAA	-14	NA	138615253	138576635	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chrX_-_138577363_138577761_138578376_138614334
transcript_10282.known	chr10	-	2240	7	FSM	ENSMUSG00000025358.17	ENSMUST00000026415.9	2240	7	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_2	273.112309011024	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTGAATCTCTTTCATAT	8275	False	NA	-16	True	ATTAAA	-20	NA	128540872	128533807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128535080_128535340_128535545_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
transcript_102823.known	chrX	-	811	4	FSM	ENSMUSG00000072945.4	ENSMUST00000101217.4	811	4	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_3	2.16024689946929	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTCTTGTGCCAACAGT	NA	False	NA	NA	False	NA	NA	NA	138683102	138680297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_138680762_138681239_138681305_138681861_138681938_138682896
transcript_102824.known	chrX	-	2195	6	FSM	ENSMUSG00000031434.16	ENSMUST00000113014.8	2195	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	25.9044397739075	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAACACTTTTTTCCTG	NA	False	NA	NA	False	AATAAA	-5	NA	138772371	138757103	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_138758376_138758496_138758645_138759547_138759766_138765243_138765377_138771818_138771892_138772020
transcript_102825.known	chrX	-	2326	5	FSM	ENSMUSG00000031434.16	ENSMUST00000144481.8	2326	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	23.3706546763243	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTTTTCCTGACTTTTT	NA	False	NA	NA	False	AATAAA	-12	NA	138772374	138757096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_138758645_138759547_138759766_138765243_138765377_138771818_138771892_138772020
transcript_102826.known	chrX	-	3728	8	FSM	ENSMUSG00000031433.16	ENSMUST00000113011.9	3728	8	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	12.2291054623044	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACAAAAAGGGGAAAACAT	NA	False	NA	NA	False	NA	NA	NA	138899306	138844121	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_138846653_138855655_138855804_138868944_138869349_138892264_138892337_138894046_138894252_138894660_138894854_138895860_138895978_138899248
transcript_102827.known	chrX	-	2787	7	FSM	ENSMUSG00000031433.16	ENSMUST00000033810.8	2787	7	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	6.26276474268531	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGAAATAAGGTGGCTAAAT	NA	False	NA	NA	False	AATAAA	-7	NA	138899300	138844984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_138846653_138855655_138855804_138868944_138869349_138894046_138894252_138894660_138894854_138895860_138895978_138899248
transcript_102828.known	chrX	-	2229	7	FSM	ENSMUSG00000031433.16	ENSMUST00000087400.12	2229	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACCTGAGTGTTTCTAGT	NA	False	NA	NA	False	NA	NA	NA	138899344	138790259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_138791326_138855655_138855804_138868944_138869349_138894046_138894252_138894660_138894854_138895860_138895978_138899248
transcript_10283.known	chr10	-	549	5	FSM	ENSMUSG00000025358.17	ENSMUST00000220407.2	549	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	506.888732859589	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATCTTTGCTGAAATGGTA	8697	False	NA	NA	False	NA	NA	NA	128540450	128537228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540356
transcript_102832.nic	chrX	-	1089	5	ISM	ENSMUSG00000031433.16	ENSMUST00000033810.8	2787	7	-15	23857	0	272	5prime_fragment	FALSE	canonical	3	21	junction_4	5.67890834580027	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGGTACAGTGAGTGGTC	NA	False	NA	NA	False	TTTAAA	-30	NA	138899315	138868841	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_138869349_138894046_138894252_138894660_138894854_138895860_138895978_138899248
transcript_102837.nic	chrX	-	1931	9	NIC	ENSMUSG00000072944.12	novel	1996	9	NA	NA	-45	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_8	170.821864452417	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGGCTGAACTGGGTTT	NA	False	NA	-9	True	AATAAA	-16	NA	138963087	138907553	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_138908616_138922769_138922837_138925977_138926090_138928316_138928452_138928587_138928638_138928886_138929038_138935506_138935664_138939798_138939905_138962996
transcript_102838.known	chrX	-	1996	9	FSM	ENSMUSG00000072944.12	ENSMUST00000101212.9	1996	9	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_8	135.330151850946	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGGCTGAACTGGGTTT	NA	False	NA	-9	True	AATAAA	-16	NA	138963317	138907553	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_138908616_138922769_138922837_138925977_138926090_138928316_138928452_138928587_138928638_138928886_138929038_138935506_138935664_138939798_138939905_138963161
transcript_102839.nic	chrX	-	2026	9	NIC	ENSMUSG00000072944.12	novel	1996	9	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	238	junction_8	106.849119673491	922	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGGCTGAACTGGGTTT	NA	False	NA	-9	True	AATAAA	-16	NA	138963493	138907553	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_138908616_138922769_138922837_138925977_138926090_138928316_138928452_138928587_138928638_138928886_138929038_138935506_138935664_138939798_138939905_138963307
transcript_102848.known	chrX	-	365	4	FSM	ENSMUSG00000072944.12	ENSMUST00000125678.9	365	4	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_3	165.703215284301	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACACTATTTTTATCAG	NA	False	NA	NA	False	NA	NA	NA	138963329	138928957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_138929038_138935506_138935664_138939798_138939905_138963307
transcript_10285.nic	chr10	-	1044	5	ISM	ENSMUSG00000025358.17	ENSMUST00000026416.15	2406	8	-45	3191	-44	225	5prime_fragment	FALSE	canonical	3	1015	junction_2	105.157025442906	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTGAGTGAGCTCAATC	8203	False	NA	NA	False	NA	NA	NA	128540944	128537003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
transcript_102852.nnic	chrX	+	504	3	Genic_Genomic	ENSMUSG00000093102.3	novel	65	1	NA	NA	-17148	48	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGACCGCCTCATCCTG	NA	False	NA	NA	False	NA	NA	NA	139194548	139211809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chrX_+_139194678_139200137_139200179_139211475
transcript_10286.nic	chr10	-	938	4	ISM	ENSMUSG00000025357.9	ENSMUST00000026414.9	2834	24	22515	0	9487	0	3prime_fragment	FALSE	canonical	3	88	junction_2	12.5521135891752	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTCCCGCAAGGTTCTGA	8804	False	NA	-10	True	AATAAA	-16	NA	128557429	128556002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_128556376_128556585_128556647_128556820_128556942_128557046
transcript_102861.known	chrX	+	1965	7	FSM	ENSMUSG00000031432.4	ENSMUST00000033809.4	1965	7	0	0	0	0	multi-exon	FALSE	canonical	3	1771	junction_6	191.019850626403	10267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGGGTGTACTGTCATA	NA	False	NA	27	True	AATAAA	-19	NA	139357361	139376889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_139357613_139365979_139366164_139368420_139368520_139369583_139369709_139372745_139372920_139374527_139374688_139375917
transcript_102862.known	chrX	+	463	2	FSM	ENSMUSG00000031432.4	ENSMUST00000155235.2	463	2	0	0	0	0	multi-exon	FALSE	canonical	3	2349	junction_1	0	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	139357361	139366191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_139357613_139365979
transcript_102864.known	chrX	-	1552	4	FSM	ENSMUSG00000031431.14	ENSMUST00000112996.9	1552	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	117.12196871448	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGCATCGTTTTTCTATA	NA	False	NA	NA	False	TATAAA	-17	NA	139501408	139441010	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_139441857_139442853_139442906_139498876_139499308_139501185
transcript_102866.known	chrX	-	1790	3	FSM	ENSMUSG00000031431.14	ENSMUST00000112995.3	1790	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_2	112.5	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTGTGAGTGCATAA	NA	False	NA	NA	False	AATAAA	-26	NA	139443417	139440276	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_139441857_139442853_139442906_139443259
transcript_10287.known	chr10	-	2971	6	FSM	ENSMUSG00000025358.17	ENSMUST00000219099.2	2971	6	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_2	293.827160078846	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAGAGTGAATCTCTTT	8247	False	NA	-21	True	ATTAAA	-15	NA	128540900	128533812	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128535080_128535340_128535545_128537211_128537314_128538281_128538453_128539575_128539697_128539794
transcript_102871.known	chrX	-	1974	3	FSM	ENSMUSG00000031431.14	ENSMUST00000055738.12	1974	3	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_2	61	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTGTGAGTGCATAA	NA	False	NA	NA	False	AATAAA	-26	NA	139443936	139440276	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_139441857_139442853_139442906_139443594
transcript_102875.known	chrX	-	1430	5	FSM	ENSMUSG00000031429.15	ENSMUST00000033805.15	1430	5	0	0	0	0	multi-exon	FALSE	canonical	3	522	junction_1	39.0024037720754	1926	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCCCAATTTCTCATTC	NA	False	NA	-8	True	AATAAA	-11	NA	139857438	139849177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_139850059_139852895_139853063_139853153_139853301_139854548_139854648_139857302
transcript_102876.known	chrX	-	1390	5	FSM	ENSMUSG00000031429.15	ENSMUST00000112978.2	1390	5	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	228.562218006389	533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCCCAATTTCTCATTC	NA	False	NA	-8	True	AATAAA	-11	NA	139857477	139849177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_139850059_139852974_139853063_139853153_139853301_139854548_139854648_139857302
transcript_102877.known	chrX	+	2202	13	FSM	ENSMUSG00000079418.6	ENSMUST00000112971.2	2202	13	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_1	12.4707992259251	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGACGTTTCAGGACTAAAA	NA	False	NA	NA	False	ATTAAA	-10	NA	139857655	139947266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_139857721_139887027_139887139_139888914_139888987_139890906_139891006_139893565_139893668_139893817_139893891_139895351_139895432_139896010_139896190_139896311_139896391_139941722_139941869_139943027_139943085_139945462_139945572_139946236
transcript_102880.known	chrX	+	2091	12	FSM	ENSMUSG00000079418.6	ENSMUST00000239541.1	2091	12	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	18.0797133013179	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGACGTTTCAGGACTAAAA	NA	False	NA	NA	False	ATTAAA	-10	NA	139857694	139947266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_139857721_139887027_139887139_139890906_139891006_139893565_139893668_139893817_139893891_139895351_139895432_139896010_139896190_139896311_139896391_139941722_139941869_139943027_139943085_139945462_139945572_139946236
transcript_102883.known	chrX	+	2532	5	FSM	ENSMUSG00000042271.14	ENSMUST00000112916.9	2532	5	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_1	39.4865483424419	577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTCAAGTCTTTCTTA	NA	False	NA	11	True	AATAAA	-22	NA	141009765	141022688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_141009928_141011286_141011378_141012519_141012607_141019779_141019925_141020641
transcript_102884.known	chrX	+	2447	5	FSM	ENSMUSG00000042271.14	ENSMUST00000042329.12	2447	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	115.070358911407	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTCAAGTCTTTCTTA	NA	False	NA	11	True	AATAAA	-22	NA	141010932	141022688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_141011010_141011286_141011378_141012519_141012607_141019779_141019925_141020641
transcript_102886.known	chrX	+	2484	4	FSM	ENSMUSG00000042271.14	ENSMUST00000112914.8	2484	4	0	0	0	0	multi-exon	FALSE	canonical	3	263	junction_3	9.93310961716756	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTCAAGTCTTTCTTA	NA	False	NA	11	True	AATAAA	-22	NA	141011172	141022688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_141011378_141012519_141012607_141019779_141019925_141020641
transcript_102887.known	chrX	+	2538	4	FSM	ENSMUSG00000042271.14	ENSMUST00000112913.2	2538	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	129.476724635056	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTCAAGTCTTTCTTA	NA	False	NA	11	True	AATAAA	-22	NA	141011698	141022688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_141011958_141012519_141012607_141019779_141019925_141020641
transcript_102888.known	chrX	-	4959	16	FSM	ENSMUSG00000031278.13	ENSMUST00000112904.8	4959	16	0	0	0	0	multi-exon	TRUE	canonical	3	35	junction_14	37.5140862432589	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTTTGTTTTTTCTTAT	NA	False	NA	-3	True	AATAAA	-18	NA	141173500	141100988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_141103831_141110971_141111130_141111843_141111959_141115187_141115380_141116665_141116741_141121879_141122053_141122945_141123086_141124330_141124403_141126069_141126194_141126302_141126454_141128423_141128563_141131997_141132108_141133955_141134134_141134374_141134615_141143382_141143433_141173300
transcript_102889.known	chrX	-	5280	16	FSM	ENSMUSG00000031278.13	ENSMUST00000033634.5	5280	16	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_14	18.9168942717585	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTTTGTTTTTTCTTAT	NA	False	NA	-3	True	AATAAA	-18	NA	141173531	141100988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_141103831_141110971_141111130_141111843_141111959_141115187_141115380_141116665_141116741_141121879_141122053_141122945_141123086_141124330_141124403_141126069_141126194_141126302_141126454_141128423_141128563_141131997_141132108_141133955_141134134_141134374_141134905_141143382_141143433_141173300
transcript_102892.known	chrX	+	213	1	FSM	ENSMUSG00000071680.7	ENSMUST00000117647.2	213	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGACCTCTGCGTGTGAC	NA	False	NA	NA	False	NA	NA	NA	141195750	141195963	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_141195800_141196000
transcript_102893.known	chrX	+	5149	7	FSM	ENSMUSG00000047045.18	ENSMUST00000087333.9	5149	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	37.6592913133296	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACTTAGCATTTTGAATC	NA	False	NA	8	True	AATAAA	-15	NA	141464413	141621234	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_141464553_141465286_141465946_141535035_141535086_141553962_141554030_141588985_141589065_141615496_141615598_141617180
transcript_102894.nic	chrX	+	707	6	ISM	ENSMUSG00000047045.18	ENSMUST00000112889.8	1742	7	-47	9098	-47	-3842	5prime_fragment	FALSE	canonical	3	60	junction_1	22.0599184042009	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGGGTTTTGTTTTTGTT	NA	False	NA	NA	False	AATAGA	-10	NA	141464354	141617392	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_+_141464553_141535035_141535086_141553962_141554030_141588985_141589065_141615496_141615598_141617180
transcript_102896.known	chrX	-	3561	13	FSM	ENSMUSG00000067276.6	ENSMUST00000087316.6	3561	13	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	5.06348584365444	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCTTGACTAGTTAATGG	NA	False	NA	NA	False	AATAAA	-22	NA	142610410	142585226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_142586823_142587352_142587490_142587670_142587793_142588390_142588594_142588758_142588882_142590241_142590429_142590522_142590601_142590836_142591031_142591613_142591807_142592290_142592500_142593840_142593973_142603291_142603473_142610204
transcript_102909.known	chrX	+	479	4	FSM	ENSMUSG00000041718.17	ENSMUST00000149330.8	479	4	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_3	280.483313031077	880	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAATCAAAATAAATTCAT	NA	False	NA	40	True	TTTAAA	-31	NA	143100998	143107173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_143101118_143102998_143103058_143105007_143105147_143107011
transcript_10291.known	chr10	+	1143	4	FSM	ENSMUSG00000064030.16	ENSMUST00000218218.2	1143	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	140.632697320202	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTCAGGCTTTGGCTCT	NA	False	NA	NA	False	AATAAA	-16	NA	128584396	128602433	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_128584436_128586151_128586207_128601015_128601110_128601478
transcript_102910.known	chrX	+	1802	4	FSM	ENSMUSG00000041718.17	ENSMUST00000070801.11	1802	4	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_3	294.754511792818	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTGGCTGTTACTTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	143100799	143108193	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_143101118_143102894_143103058_143105007_143105147_143107011
transcript_102911.known	chrX	+	508	4	FSM	ENSMUSG00000041718.17	ENSMUST00000040338.9	508	4	0	0	0	0	multi-exon	TRUE	canonical	3	134	junction_1	450.286081903	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAGATCCCAAGGTAAGTT	NA	False	NA	NA	False	NA	NA	NA	143118864	143121997	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_143118899_143119107_143119460_143120087_143120172_143121959
transcript_102912.known	chrX	-	4892	21	FSM	ENSMUSG00000031290.15	ENSMUST00000112819.9	4892	21	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_17	2.22710574513201	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATCTAAGCCTGGAA	NA	False	NA	NA	False	GATAAA	-9	NA	146337046	146253382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_146256073_146263252_146263331_146263463_146263602_146263779_146263893_146264610_146264669_146267749_146267801_146271229_146271275_146274830_146274948_146275034_146275084_146279762_146279829_146286379_146286488_146291654_146291714_146291814_146291913_146292105_146292218_146292700_146292789_146295048_146295183_146302033_146302171_146302255_146302362_146305508_146305636_146308269_146308415_146336673
transcript_102915.known	chrX	+	1350	7	FSM	ENSMUSG00000095872.8	ENSMUST00000178833.2	1350	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	6.15539510420646	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAATCTTCGAGAAACCAGG	NA	False	NA	NA	False	NA	NA	NA	146572723	146615851	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_146572740_146589721_146589848_146590566_146590647_146594315_146595275_146608125_146608208_146609013_146609064_146615814
transcript_102917.known	chrX	+	2029	7	FSM	ENSMUSG00000072931.5	ENSMUST00000112804.3	2029	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	7.01585505994973	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTGTGTTTGTTT	NA	False	NA	NA	False	AATAAA	-19	NA	146775988	146816170	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_146776081_146793097_146793224_146793943_146794024_146797694_146798654_146807824_146807907_146808712_146808763_146815530
transcript_102919.known	chrX	+	2028	7	FSM	ENSMUSG00000072930.4	ENSMUST00000112796.2	2028	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	7.43303437365925	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTGTTTGTGTGTGTG	1209	False	NA	NA	False	AATAAA	-19	NA	146963719	147007706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_146963812_146980956_146981083_146981801_146981882_146985542_146986502_146999377_146999460_147000265_147000316_147007067
transcript_102926.known	chrX	+	2026	7	FSM	ENSMUSG00000096834.8	ENSMUST00000101186.10	2026	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	5.30461015427985	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTGTGTTTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	147446593	147486845	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_147446686_147463739_147463866_147464585_147464666_147468313_147469273_147478430_147478513_147479317_147479368_147486208
transcript_102930.known	chrX	+	2025	7	FSM	ENSMUSG00000079387.11	ENSMUST00000163338.2	2025	7	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	4.85626742811116	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTGTGTTTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	147665571	147707135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_147665664_147686432_147686559_147687278_147687359_147690981_147691941_147698819_147698902_147699707_147699758_147706499
transcript_102931.known	chrX	+	2023	7	FSM	ENSMUSG00000079387.11	ENSMUST00000101185.10	2023	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6.77413381096719	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTGTGTTTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	147640635	147707135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_147640726_147686432_147686559_147687278_147687359_147690981_147691941_147698819_147698902_147699707_147699758_147706499
transcript_102933.known	chrX	+	2028	7	FSM	ENSMUSG00000094885.8	ENSMUST00000177554.2	2028	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	5.58022301426107	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTGTGTTTGTTT	NA	False	NA	NA	False	AATAAA	-19	NA	147880947	147921148	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_147881040_147898081_147898208_147898926_147899007_147902668_147903628_147912815_147912898_147913703_147913754_147920509
transcript_102936.known	chrX	+	2028	7	FSM	ENSMUSG00000095621.2	ENSMUST00000178169.2	2028	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	6.67707520800338	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTGTGTTTGTTT	NA	False	NA	NA	False	AATAAA	-19	NA	148230612	148270780	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_148230705_148247706_148247833_148248551_148248632_148252302_148253262_148262449_148262532_148263337_148263388_148270141
transcript_102940.known	chrX	+	1977	7	FSM	ENSMUSG00000072923.7	ENSMUST00000101181.5	1977	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.06622805119022	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTGTGTTTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	148377565	148419760	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_148377658_148394767_148394894_148395612_148395693_148399354_148400266_148411437_148411520_148412325_148412376_148419124
transcript_102941.known	chrX	+	2029	7	FSM	ENSMUSG00000094378.8	ENSMUST00000101180.8	2029	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	4.6785562825394	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTTGTGTTTGT	NA	False	NA	NA	False	AATAAA	-19	NA	148567468	148609690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_148567561_148582582_148582709_148583428_148583509_148587159_148588119_148601122_148601205_148602010_148602061_148609050
transcript_102942.nnic	chrX	+	1118	6	NIC	ENSMUSG00000094378.8	novel	2029	7	NA	NA	-48	0	combination_of_known_splicesites	TRUE	canonical	0	0	junction_3	5.63560112144215	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTTGTGTTTGT	NA	False	NA	NA	False	AATAAA	-19	NA	148567420	148609690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_148567561_148582582_148582709_148583428_148583509_148601122_148601205_148602010_148602061_148609050
transcript_102943.known	chrX	+	2026	7	FSM	ENSMUSG00000095082.2	ENSMUST00000112740.2	2026	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	4.07226390762354	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTGTGTTTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	148724650	148767978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_148724743_148744867_148744994_148745713_148745794_148749452_148750412_148759566_148759649_148760454_148760505_148767341
transcript_102963.known	chrX	-	748	3	FSM	ENSMUSG00000041353.13	ENSMUST00000143526.8	748	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	129.5	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAAGTGGCTCATTAGGT	NA	False	NA	NA	False	NA	NA	NA	149218518	149192101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_149192597_149203337_149203438_149218365
transcript_102964.known	chrX	-	669	3	FSM	ENSMUSG00000041353.13	ENSMUST00000128771.2	669	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	123	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTAAAATAGCAGCATGAGG	NA	False	NA	NA	False	NA	NA	NA	149223901	149192166	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_149192597_149203337_149203438_149223762
transcript_102965.known	chrX	-	1250	3	FSM	ENSMUSG00000041353.13	ENSMUST00000141948.8	1250	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	125	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGACTTGAGAGGTATT	NA	False	NA	NA	False	GATAAA	-21	NA	149224102	149191573	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_149192597_149203337_149203438_149223975
transcript_102967.known	chrX	-	1316	3	FSM	ENSMUSG00000041353.13	ENSMUST00000148968.8	1316	3	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_2	83.5	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGACTTGAGAGGTATT	NA	False	NA	NA	False	GATAAA	-21	NA	149242150	149191573	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_149192597_149203337_149203438_149241957
transcript_102968.known	chrX	-	864	3	FSM	ENSMUSG00000041353.13	ENSMUST00000151067.8	864	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	131	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTCTCATTCTGATATG	NA	False	NA	NA	False	NA	NA	NA	149242150	149191915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_149192597_149203337_149203438_149242067
transcript_102977.known	chrX	-	523	2	FSM	ENSMUSG00000041353.13	ENSMUST00000134601.2	523	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTTTGCATATCGCATT	NA	False	NA	NA	False	AATAAA	-25	NA	149223785	149220949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_149221359_149223671
transcript_102980.nic	chrX	+	2138	16	NIC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	-60	0	combination_of_known_junctions	TRUE	canonical	3	14	junction_2	17.6227126175286	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCTTTCATTGTTCTC	NA	False	NA	19	True	AATAAA	-37	NA	149371164	149426874	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_149371339_149371940_149372041_149372791_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
transcript_102983.nic	chrX	+	1981	16	NIC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	-60	0	combination_of_known_junctions	FALSE	canonical	3	50	junction_2	10.2058806577385	120	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCTTTCATTGTTCTC	NA	False	NA	19	True	AATAAA	-37	NA	149371164	149426874	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_149371339_149371940_149372041_149372948_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
transcript_102987.nnic	chrX	+	2015	16	NNC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	17.7330827049958	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCTTTCATTGTTCTC	NA	False	NA	19	True	AATAAA	-37	NA	149371201	149426874	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_149371410_149371940_149372041_149372948_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
transcript_102991.known	chrX	-	795	6	FSM	ENSMUSG00000025269.17	ENSMUST00000140207.8	795	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	34.2963554915096	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGCTGGTCAGTGGTCA	NA	False	NA	NA	False	AAAACA	-13	NA	149371067	149355544	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_149355679_149367460_149367531_149368196_149368344_149368860_149369042_149370038_149370123_149370888
transcript_102992.known	chrX	-	1884	6	FSM	ENSMUSG00000025269.17	ENSMUST00000026303.16	1884	6	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	8.28009661779378	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCATGTTGAGTGGATAT	NA	False	NA	-4	True	AATAAA	-21	NA	149371145	149354503	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_149355679_149367460_149367531_149368196_149368344_149368860_149369042_149370038_149370123_149370918
transcript_102993.known	chrX	-	1852	6	FSM	ENSMUSG00000025269.17	ENSMUST00000112721.10	1852	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	32.5662401882686	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCATGTTGAGTGGATAT	NA	False	NA	-4	True	AATAAA	-21	NA	149371092	149354503	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_149355679_149367460_149367531_149368196_149368344_149368860_149369063_149370038_149370123_149370918
transcript_102995.known	chrX	-	2644	12	FSM	ENSMUSG00000025272.17	ENSMUST00000163969.8	2644	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	8.02063454549555	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGAGCTTATTCTGTCCTT	NA	False	NA	-21	True	ATTAAA	-14	NA	149440432	149428303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_149428518_149433429_149433545_149433972_149434036_149434411_149434455_149434548_149434629_149435279_149435372_149435836_149435917_149436115_149436180_149436287_149436393_149436984_149438611_149438879_149438950_149440340
transcript_102996.known	chrX	-	6610	13	FSM	ENSMUSG00000025272.17	ENSMUST00000112709.8	6610	13	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_12	3.93964888452427	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTATTCTGTCCTTTAAT	NA	False	NA	-17	True	ATTAAA	-18	NA	149440432	149428299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_149428518_149428689_149432652_149433429_149433545_149433972_149434036_149434411_149434455_149434548_149434629_149435279_149435372_149435836_149435917_149436115_149436180_149436287_149436393_149436984_149438611_149438879_149438950_149440340
transcript_1030.nic	chr1	-	1057	4	NIC	ENSMUSG00000025920.20	novel	1151	5	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	38.8529993122224	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGTTTGTTGTTTATTG	NA	False	NA	NA	False	NA	NA	NA	16589521	16529938	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_16530644_16533258_16533419_16579565_16579633_16589396
transcript_10300.known	chr10	+	1156	3	FSM	ENSMUSG00000064030.16	ENSMUST00000065210.10	1156	3	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	117	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACATGTGGTCAGGCTTTG	NA	False	NA	NA	False	AATAAA	-11	NA	128584323	128602428	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_128584436_128601015_128601110_128601478
transcript_103009.nic	chrX	-	2191	13	NIC	ENSMUSG00000025268.16	novel	2107	13	NA	NA	-28	0	intron_retention	FALSE	canonical	3	35	junction_12	45.1259810604342	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTGCCATTTTTGTTT	NA	False	NA	0	True	NA	NA	NA	149595992	149589416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149595816
transcript_103010.known	chrX	-	2107	13	FSM	ENSMUSG00000025268.16	ENSMUST00000112700.8	2107	13	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_12	38.0929965858409	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTGCCATTTTTGTTT	NA	False	NA	0	True	NA	NA	NA	149596703	149589416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149596611
transcript_103011.known	chrX	-	2183	13	FSM	ENSMUSG00000025268.16	ENSMUST00000112699.9	2183	13	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_12	47.4332864839309	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCGTCAAAGTTTCCATCTG	NA	False	NA	51	True	TTTAAA	-5	NA	149597341	149589365	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149597224
transcript_103012.nic	chrX	-	2272	12	ISM	ENSMUSG00000025268.16	ENSMUST00000112700.8	2107	13	713	0	-26	0	3prime_fragment	FALSE	canonical	3	154	junction_9	18.0545546095372	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTGCCATTTTTGTTT	NA	False	NA	0	True	NA	NA	NA	149595990	149589416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666
transcript_103013.known	chrX	-	2572	11	FSM	ENSMUSG00000025268.16	ENSMUST00000145342.8	2572	11	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_8	16.0735808082704	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTGCCATTTTTGTTT	NA	False	NA	0	True	NA	NA	NA	149595964	149589416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666
transcript_103028.known	chrX	+	4001	18	FSM	ENSMUSG00000025265.15	ENSMUST00000026296.8	4001	18	0	0	0	0	multi-exon	FALSE	canonical	3	331	junction_3	37.9662935558211	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCAGAGCACTGCTATGG	NA	False	NA	20	True	AATACA	-23	NA	149830165	149872517	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_149830978_149849176_149849351_149849705_149849884_149850008_149850448_149851872_149851963_149852637_149852787_149855168_149855326_149855429_149855569_149861954_149862014_149862153_149862301_149862874_149862968_149863112_149863193_149868626_149868658_149869109_149869212_149869515_149869642_149869815_149869978_149870963_149871108_149871598
transcript_103034.known	chrX	-	1318	4	FSM	ENSMUSG00000025264.13	ENSMUST00000166010.2	1318	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_3	140.42158745087	715	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTATCCATTGTCCTCCCC	NA	False	NA	-3	True	AATAAA	-21	NA	149879539	149872476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_149873411_149873600_149873778_149874671_149874764_149879424
transcript_103035.known	chrX	-	483	1	FSM	ENSMUSG00000083596.5	ENSMUST00000121545.2	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12154	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTACACAAAGAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	149998645	149998162	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_149998200_149998600
transcript_10304.known	chr10	+	1158	3	FSM	ENSMUSG00000064030.16	ENSMUST00000163377.10	1158	3	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_1	26	868	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGGTCAGGCTTTGGCTC	NA	False	NA	NA	False	AATAAA	-15	NA	128583757	128602432	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_128583868_128601015_128601110_128601478
transcript_103044.nnic	chrX	-	810	5	NNC	ENSMUSG00000084771.9	novel	641	5	NA	NA	-13680	123	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3.3166247903554	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATACTTTTGGGATATAAGA	NA	False	NA	NA	False	AATAAA	-44	NA	150108082	150076096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_150076491_150076760_150076884_150078466_150078569_150094333_150094403_150107960
transcript_103046.nnic	chrX	-	692	5	NNC	ENSMUSG00000084771.9	novel	641	5	NA	NA	-13678	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2.95803989154981	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCAGTATCTTCTTGTC	NA	False	NA	NA	False	ATTAAA	-14	NA	150108080	150076219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_150076491_150076760_150076884_150078466_150078569_150082101_150082178_150107960
transcript_103050.nnic	chrX	-	616	4	NNC	ENSMUSG00000084771.9	novel	676	4	NA	NA	-13678	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	1.88561808316413	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCAGTATCTTCTTGTC	NA	False	NA	NA	False	ATTAAA	-14	NA	150108080	150076219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_150076491_150076760_150076884_150078466_150078569_150107960
transcript_103053.known	chrX	+	644	6	FSM	ENSMUSG00000025261.19	ENSMUST00000138566.8	644	6	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	49.6040320941756	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCTCTTGGAACTGCAGC	NA	False	NA	NA	False	AATAGA	-28	NA	150586657	150623104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_150586799_150589271_150589404_150589715_150589857_150618219_150618289_150619217_150619326_150623051
transcript_103054.known	chrX	+	4473	25	FSM	ENSMUSG00000025261.19	ENSMUST00000153687.8	4473	25	0	0	0	0	multi-exon	TRUE	canonical	3	17	junction_3	37.1289045832968	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCCCATTTTGTCTTTTGT	NA	False	NA	NA	False	NA	NA	NA	150586238	150656029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_150586566_150589715_150589857_150618219_150618289_150619217_150619326_150623051_150623151_150623772_150623980_150625998_150626152_150633712_150633776_150635470_150635549_150636394_150636443_150636519_150636589_150637137_150637238_150639081_150639183_150639468_150639620_150639712_150639841_150640455_150640597_150640803_150640910_150643162_150643265_150643664_150643746_150645293_150645401_150645647_150645826_150646868_150646961_150647557_150647770_150653454_150653513_150654475
transcript_103059.known	chrX	+	962	6	FSM	ENSMUSG00000025260.11	ENSMUST00000026289.10	962	6	0	0	0	0	multi-exon	FALSE	canonical	3	1359	junction_1	187.651165730459	15786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGTGCAGTCTTGTGTG	NA	False	NA	16	True	AATAAA	-16	NA	150784840	150787438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_150784931_150785273_150785439_150786356_150786522_150786648_150786778_150786857_150786967_150787134
transcript_103060.known	chrX	+	1001	5	FSM	ENSMUSG00000025260.11	ENSMUST00000151200.8	1001	5	0	0	0	0	multi-exon	FALSE	canonical	3	1649	junction_4	99.7180399927716	2335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGTGCAGTCTTGTGTG	NA	False	NA	16	True	AATAAA	-16	NA	150785144	150787438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_150785439_150786356_150786522_150786648_150786778_150786857_150786967_150787134
transcript_103061.known	chrX	+	992	6	FSM	ENSMUSG00000025260.11	ENSMUST00000112617.4	992	6	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	696.467486678309	487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGTGCAGTCTTGTGTG	NA	False	NA	16	True	AATAAA	-16	NA	150784840	150787438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_150784931_150785273_150785439_150786356_150786522_150786618_150786778_150786857_150786967_150787134
transcript_103065.nnic	chrX	-	1555	8	NIC	ENSMUSG00000025257.6	novel	1508	8	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_7	33.0126753640761	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGTGTCGTAAGAGTA	NA	False	NA	-2	True	AATAAA	-17	NA	150799299	150787577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_150787807_150787914_150788310_150788734_150788854_150790211_150790557_150790742_150790825_150792520_150792638_150798776_150798865_150799119
transcript_103066.known	chrX	-	1508	8	FSM	ENSMUSG00000025257.6	ENSMUST00000026288.5	1508	8	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_7	14.6816559150582	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGTGTCGTAAGAGTA	NA	False	NA	-2	True	AATAAA	-17	NA	150799291	150787577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_150787807_150787914_150788310_150788734_150788854_150790211_150790557_150790742_150790825_150792520_150792638_150798776_150798865_150799158
transcript_103076.known	chrX	+	4691	25	FSM	ENSMUSG00000041133.12	ENSMUST00000045312.6	4691	25	0	0	0	0	multi-exon	TRUE	canonical	3	535	junction_3	101.202320735358	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTAGCTTCAATTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	150799423	150845690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
transcript_103082.known	chrX	+	1824	10	FSM	ENSMUSG00000041133.12	ENSMUST00000145518.8	1824	10	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_1	207.77290546872	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAAAAAAGAACGTTT	NA	False	NA	NA	False	NA	NA	NA	150799423	150819208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_150799637_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097
transcript_103083.known	chrX	+	959	3	FSM	ENSMUSG00000041115.17	ENSMUST00000146835.8	959	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTCTGTCTGATGTATGT	NA	False	NA	NA	False	AATAAA	-12	NA	150961959	150977597	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_150962087_150963992_150964089_150976861
transcript_103086.nnic	chrX	-	863	3	Antisense	novelGene_ENSMUSG00000041115.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_2	2	22	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTAATCTCAGGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	150992508	150990232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chrX_-_150990586_150991699_150991850_150992148
transcript_103089.known	chrX	+	863	2	FSM	ENSMUSG00000041115.17	ENSMUST00000128724.8	863	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTCTGTCTGATGTATGT	NA	False	NA	NA	False	AATAAA	-12	NA	150961959	150977597	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_150962087_150976861
transcript_103090.known	chrX	+	5900	26	FSM	ENSMUSG00000025332.15	ENSMUST00000112584.8	5900	26	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_24	80.1180528969595	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGGAGAAAAAAAAAAGC	NA	False	NA	21	True	AATAAA	-31	NA	151016015	151056764	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_151016707_151020628_151020707_151022625_151022749_151023021_151023193_151025032_151025168_151027868_151027993_151028097_151028280_151029250_151029410_151031423_151031544_151031657_151031817_151036419_151036602_151036694_151036858_151044932_151045053_151045158_151045354_151049552_151049735_151049812_151049938_151050078_151050227_151050890_151050997_151051760_151052120_151052710_151052850_151053347_151053528_151053689_151053828_151054007_151054590_151054855_151054935_151055070_151055271_151055704
transcript_103094.known	chrX	-	367	4	FSM	ENSMUSG00000087403.10	ENSMUST00000141922.8	367	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	33.5360502544153	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGATAGAGCACCTGCCGG	NA	False	NA	NA	False	NA	NA	NA	151110466	151098307	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_151098416_151103205_151103281_151110156_151110236_151110361
transcript_103099.known	chrX	-	445	3	FSM	ENSMUSG00000087403.10	ENSMUST00000149098.8	445	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	40.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGACTGCTCTCCAGGCCC	NA	False	NA	NA	False	NA	NA	NA	151110491	151081647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_151081884_151110156_151110236_151110361
transcript_103100.known	chrX	-	4212	3	FSM	ENSMUSG00000087403.10	ENSMUST00000195280.3	4212	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	19	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATGACTGTGTGACTTCC	NA	False	NA	NA	False	NA	NA	NA	151110491	151077823	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_151081871_151110156_151110236_151110405
transcript_103102.nnic	chrX	-	439	3	NIC	ENSMUSG00000087403.10	novel	367	4	NA	NA	-15	11	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	40	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAAAAAAAAACAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	151110506	151098200	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_151098416_151110156_151110236_151110361
transcript_103103.nnic	chrX	-	401	3	NIC	ENSMUSG00000087403.10	novel	367	4	NA	NA	-21	11	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	7.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAAAAAAAAACAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	151110512	151098200	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_151098416_151110156_151110236_151110405
transcript_103106.nnic	chrX	-	359	3	NNC	ENSMUSG00000087403.10	novel	4212	3	NA	NA	-15	-5858	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	40.5	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTTGATATAACTTCACT	NA	False	NA	NA	False	NA	NA	NA	151110506	151108650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_151108786_151110156_151110236_151110361
transcript_103108.known	chrX	-	672	3	FSM	ENSMUSG00000087403.10	ENSMUST00000154085.2	672	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	29.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGTGCTCTTAACCACTG	NA	False	NA	NA	False	NA	NA	NA	151110466	151102792	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_151103281_151110156_151110236_151110361
transcript_103109.known	chrX	-	2696	7	FSM	ENSMUSG00000041096.14	ENSMUST00000044509.7	2696	7	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_2	16.4189930669738	225	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCCTCTTGGAGTCTTTTG	NA	False	NA	-4	True	AATAAA	-17	NA	151125421	151119850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_151120562_151121720_151122389_151122628_151122724_151122857_151123004_151123081_151123194_151123298_151123377_151124535
transcript_103112.known	chrX	-	998	3	FSM	ENSMUSG00000056679.14	ENSMUST00000137840.2	998	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	2	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCTGTGTTTATAGGATG	NA	False	NA	NA	False	NA	NA	NA	151151700	151150011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_151150266_151150416_151150507_151151046
transcript_103113.known	chrX	+	1586	9	FSM	ENSMUSG00000025333.11	ENSMUST00000026383.4	1586	9	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_8	3.91910385164772	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAACTCCATTTTGACATG	NA	False	NA	NA	False	AATAAA	-10	NA	151564981	151591642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_151565289_151568038_151568149_151569121_151569217_151573479_151573573_151576324_151576435_151578551_151578661_151580695_151580814_151581373_151581612_151591236
transcript_103122.nnic	chrX	+	647	2	Antisense	novelGene_ENSMUSG00000095597.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	859	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTCTTCTTGAACAGAGG	NA	False	NA	NA	False	NA	NA	NA	151692481	151693190	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chrX_+_151692755_151692816
transcript_103124.nnic	chrX	-	655	2	Genic_Genomic	ENSMUSG00000095597.3	novel	651	1	NA	NA	-37	17	multi-exon	FALSE	canonical	0	0	junction_1	0	1067	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAGAGG	NA	False	NA	NA	False	AATAAA	-31	NA	151693188	151692483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chrX_-_151692826_151692875
transcript_103125.nnic	chrX	-	610	2	Genic_Genomic	ENSMUSG00000095597.3	novel	651	1	NA	NA	-33	12	multi-exon	FALSE	canonical	0	0	junction_1	0	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-26	NA	151693184	151692488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chrX_-_151692610_151692695
transcript_103128.known	chrX	-	651	1	FSM	ENSMUSG00000095597.3	ENSMUST00000178147.3	651	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	191321	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	151693151	151692500	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_151692500_151693200
transcript_103129.known	chrX	-	582	1	FSM	ENSMUSG00000095597.3	ENSMUST00000187973.2	582	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	366	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAGAAAATGACTGAATAA	NA	False	NA	NA	False	NA	NA	NA	151693116	151692534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_151692500_151693100
transcript_103130.known	chrX	-	1410	1	FSM	ENSMUSG00000047238.5	ENSMUST00000051484.5	1410	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	567	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTTCATTTATTGTC	NA	False	NA	NA	False	AATAAA	-17	NA	151820571	151819161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_151819200_151820600
transcript_103133.known	chrX	+	3210	4	FSM	ENSMUSG00000071665.11	ENSMUST00000096265.10	3210	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.942809041582063	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATAGAGTTGATGTTTCTT	NA	False	NA	NA	False	AATAAA	-11	NA	151901781	151915857	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_151901847_151902010_151902087_151909895_151909940_151912832
transcript_103135.known	chrX	+	2258	11	FSM	ENSMUSG00000041658.13	ENSMUST00000039720.11	2258	11	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_4	30.0765689532566	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCAGTGTCTGTGTTTCTT	3176	False	NA	NA	False	AATAAA	-17	NA	151922976	151954939	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_151923572_151924359_151924394_151926971_151927072_151931447_151931532_151933357_151933425_151936126_151936350_151941190_151941287_151943397_151943521_151946073_151946166_151953182_151953299_151954211
transcript_103137.nnic	chrX	+	2247	11	NNC	ENSMUSG00000041658.13	novel	2258	11	NA	NA	-56	18249	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_10	82.4209318073995	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAACAACAACAACTGAATGA	3120	False	NA	NA	False	NA	NA	NA	151922920	151973188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_151923572_151924359_151924394_151926971_151927072_151931447_151931532_151933357_151933425_151936126_151936350_151941190_151941287_151943397_151943521_151946073_151946166_151953182_151953299_151972527
transcript_103145.nnic	chrX	+	624	4	NNC	ENSMUSG00000041649.14	novel	247	3	NA	NA	5	-116788	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	4.32049379893857	13	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGTTTCATCTGTCATTC	3990	False	NA	NA	False	NA	NA	NA	152020466	152037111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_152020508_152020946_152021089_152035141_152035302_152036830
transcript_103149.known	chrX	+	669	2	FSM	ENSMUSG00000048573.10	ENSMUST00000112573.8	669	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATGTGTCACTCTGTC	NA	False	NA	NA	False	NA	NA	NA	152341588	152342419	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_152341879_152342040
transcript_103152.known	chrX	+	485	4	FSM	ENSMUSG00000086316.9	ENSMUST00000155617.2	485	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	75.3967284878241	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGAAGGCCATGGTGTGT	NA	False	NA	NA	False	NA	NA	NA	152506934	152524118	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_152507122_152508700_152508838_152511857_152511936_152524035
transcript_103157.known	chrX	+	788	4	FSM	ENSMUSG00000086316.9	ENSMUST00000140575.8	788	4	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_3	8.37987005998436	1277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAATGTCCAAATAAATTT	NA	False	NA	9	True	ATTAAA	-14	NA	152506585	152524260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_152506934_152508700_152508838_152511857_152511936_152524035
transcript_103158.known	chrX	+	775	3	FSM	ENSMUSG00000086316.9	ENSMUST00000149514.8	775	3	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_1	3	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTGTGACCCCTTTCTT	NA	False	NA	NA	False	AGTAAA	-20	NA	152506622	152512184	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_152506934_152508700_152508838_152511857
transcript_103159.known	chrX	-	545	3	FSM	ENSMUSG00000109128.2	ENSMUST00000208332.2	545	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAAGAGTTCACGGTGTC	NA	False	NA	NA	False	NA	NA	NA	152506877	152504152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_152504422_152505936_152506044_152506708
transcript_103160.known	chrX	+	536	3	FSM	ENSMUSG00000046550.9	ENSMUST00000123264.2	536	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	2	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTGTCGTTCTCTGGAGTC	NA	False	NA	NA	False	TTTAAA	-21	NA	152615236	152616519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_152615326_152615430_152615545_152616186
transcript_103161.known	chrX	+	1309	2	FSM	ENSMUSG00000046550.9	ENSMUST00000049999.9	1309	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAGTCATCTAAAAAATTGA	NA	False	NA	NA	False	AATAAA	-19	NA	152615288	152617239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_152615545_152616186
transcript_103162.nnic	chrX	-	1722	4	NNC	ENSMUSG00000063728.11	novel	1212	3	NA	NA	-1678	346	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	3.55902608401044	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATAACACTATACTCTTC	NA	False	NA	NA	False	NA	NA	NA	153720661	153706661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_153708120_153709022_153709112_153718972_153719075_153720588
transcript_103163.nnic	chrX	-	1780	5	Genic_Genomic	ENSMUSG00000094196.3	novel	963	1	NA	NA	-9532	377	multi-exon	FALSE	canonical	3	11	junction_3	4.5	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTTAATCTCTTGTTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	153742033	153731161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chrX_-_153732567_153733511_153733601_153740339_153740441_153741158_153741264_153741953
transcript_103166.nnic	chrX	-	1779	5	NNC	ENSMUSG00000079350.3	novel	1646	4	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_3	13.4233937586588	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAACTCTTTAGTTTCTTG	NA	False	NA	-5	True	AATAAA	-16	NA	153778875	153768770	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_153770173_153771107_153771197_153777179_153777280_153777995_153778100_153778791
transcript_103169.known	chrX	-	1646	4	FSM	ENSMUSG00000079350.3	ENSMUST00000070141.7	1646	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	17.6823829464998	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAACTCTTTAGTTTCTTG	NA	False	NA	-5	True	AATAAA	-16	NA	153778846	153768770	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_153770173_153771107_153771197_153777179_153777280_153778791
transcript_103173.nnic	chrX	-	1757	5	NNC	ENSMUSG00000079349.10	novel	1360	4	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_3	19.2272592950738	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGTTTAGTTTCTTTTT	NA	False	NA	0	True	AATAAA	-18	NA	153846150	153836056	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_153837456_153838390_153838480_153844474_153844576_153845292_153845397_153846086
transcript_103175.known	chrX	-	1685	4	FSM	ENSMUSG00000055746.10	ENSMUST00000069477.8	1685	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	9.56846672960488	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGGCATTTGTAACACTA	NA	False	NA	NA	False	ATTAAA	-19	NA	153816288	153810196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_153811648_153812583_153812673_153815451_153815557_153816248
transcript_103179.known	chrX	-	1360	4	FSM	ENSMUSG00000079349.10	ENSMUST00000069556.4	1360	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	7.03957069398096	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACATTCAATTTTCGCTT	NA	False	NA	NA	False	NA	NA	NA	153846141	153836340	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_153837456_153838390_153838480_153844474_153844576_153846086
transcript_103180.nnic	chrX	-	1624	3	NIC	ENSMUSG00000055746.10	novel	1685	4	NA	NA	-44	0	combination_of_known_splicesites	FALSE	canonical	3	5	junction_2	13	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGGCATTTGTAACACTA	NA	False	NA	NA	False	ATTAAA	-19	NA	153816332	153810196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_153811648_153812583_153812673_153816248
transcript_103182.nnic	chrX	-	1463	3	NIC	ENSMUSG00000055746.10	novel	1685	4	NA	NA	-44	122	combination_of_known_splicesites	FALSE	canonical	3	5	junction_2	13	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGTAAAATGTTTCAAGAT	NA	False	NA	NA	False	AATAAA	-22	NA	153816332	153810357	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_153811648_153812583_153812673_153816248
transcript_103183.nnic	chrX	-	1587	3	NIC	ENSMUSG00000079349.10	novel	1360	4	NA	NA	-29	3	combination_of_known_splicesites	FALSE	canonical	2	6	junction_1	18.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTAGTTTCTTTTTGTG	NA	False	NA	3	True	AATAAA	-21	NA	153846170	153836053	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_153837456_153844474_153844576_153846086
transcript_103184.known	chrX	-	1563	3	FSM	ENSMUSG00000079349.10	ENSMUST00000169540.8	1563	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	8.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGTTTAGTTTCTTTTT	NA	False	NA	0	True	AATAAA	-18	NA	153844549	153836056	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_153837456_153838390_153838480_153844474
transcript_103185.known	chrX	-	360	1	FSM	ENSMUSG00000045694.5	ENSMUST00000154056.2	360	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	139	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACAACTGAATAAATCGACT	NA	False	NA	-46	True	NA	NA	NA	153934307	153933947	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_153933900_153934300
transcript_103199.known	chrX	-	1162	6	FSM	ENSMUSG00000025283.16	ENSMUST00000026318.15	1162	6	0	0	0	0	multi-exon	FALSE	canonical	3	1003	junction_1	103.839106313566	8247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAGCATTTTTACTAGT	NA	False	NA	-7	True	AATAAA	-24	NA	153999445	153996127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_153996664_153996892_153996934_153997028_153997131_153998596_153998681_153998780_153998833_153999098
transcript_103200.known	chrX	-	1272	7	FSM	ENSMUSG00000025283.16	ENSMUST00000152463.8	1272	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_4	540.496993516153	918	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAGCATTTTTACTAGT	NA	False	NA	-7	True	AATAAA	-24	NA	153999445	153996127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_153996664_153996892_153996934_153997028_153997131_153998116_153998227_153998596_153998681_153998780_153998833_153999098
transcript_103212.known	chrX	+	1752	15	FSM	ENSMUSG00000025287.16	ENSMUST00000026324.10	1752	15	0	0	0	0	multi-exon	FALSE	canonical	2	666	junction_2	111.349262068796	4147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGAGTCTCCCATGTTGT	NA	False	NA	26	True	AATAAA	-20	NA	154045438	154080650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_154045671_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
transcript_103213.known	chrX	+	1740	16	FSM	ENSMUSG00000025287.16	ENSMUST00000131332.8	1740	16	0	0	0	0	multi-exon	FALSE	canonical	2	22	junction_1	338.793873747577	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTACGATTGTGAGTCTCC	NA	False	NA	18	True	AATAAA	-12	NA	154045500	154080642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_154045671_154047031_154047090_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
transcript_103217.known	chrX	-	1025	2	FSM	ENSMUSG00000025289.16	ENSMUST00000123915.2	1025	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAATTAAGGCTATTTTT	NA	False	NA	NA	False	CATAAA	-14	NA	154121470	154119787	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_154120451_154121108
transcript_103218.known	chrX	-	990	7	FSM	ENSMUSG00000025289.16	ENSMUST00000026328.11	990	7	0	0	0	0	multi-exon	FALSE	canonical	3	951	junction_2	71.6488349909163	7842	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGTTTGCCATTGTAATTT	NA	False	NA	-1	True	AATAAA	-22	NA	154121463	154106913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_154107025_154109590_154109626_154111441_154111573_154113298_154113422_154115351_154115469_154117833_154117952_154121108
transcript_103222.known	chrX	-	1540	10	FSM	ENSMUSG00000071708.12	ENSMUST00000145477.8	1540	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	195.70127146833	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGATTAGCAGTGCTTCA	NA	False	NA	-46	True	ATTAAA	-27	NA	156275062	156228691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_156229173_156230350_156230467_156237829_156237910_156243322_156243413_156244171_156244327_156244956_156245133_156248819_156248885_156249393_156249488_156252983_156253105_156274900
transcript_103223.known	chrX	-	3053	6	FSM	ENSMUSG00000071708.12	ENSMUST00000127089.2	3053	6	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_1	22.6680391741324	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGGATGGCACTGTTGA	NA	False	NA	NA	False	AATAAA	-18	NA	156275040	156241869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_156244327_156244956_156245133_156248819_156248885_156249393_156249488_156252983_156253105_156274900
transcript_103224.known	chrX	-	4797	11	FSM	ENSMUSG00000046873.19	ENSMUST00000058098.15	4797	11	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_9	30.3809150619266	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCTTCTGTATCATATTT	NA	False	NA	-5	True	AATAAA	-35	NA	156381711	156330819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_156334147_156335911_156335988_156337878_156338075_156338592_156338688_156341880_156342062_156344378_156344498_156355854_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381491
transcript_103239.nic	chrX	-	1257	7	ISM	ENSMUSG00000046873.19	ENSMUST00000058098.15	4797	11	-22	10929	-22	7193	5prime_fragment	FALSE	canonical	3	154	junction_5	38.2771327150936	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTATTCTTGGTATGTTGG	NA	False	NA	NA	False	AATAAA	-19	NA	156381733	156341748	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_156342062_156344378_156344498_156355854_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381491
transcript_103241.nic	chrX	-	1085	6	NIC	ENSMUSG00000046873.19	novel	4797	11	NA	NA	1	7193	combination_of_known_junctions	FALSE	canonical	3	97	junction_5	56.7577307509735	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTATTCTTGGTATGTTGG	NA	False	NA	NA	False	AATAAA	-19	NA	156381710	156341748	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_156342062_156344378_156344498_156355854_156355983_156359079_156359184_156374349_156374552_156381491
transcript_103242.nnic	chrX	-	2150	6	NNC	ENSMUSG00000046873.19	novel	3891	6	NA	NA	-22	-167	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	90.6831847698348	101	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTGCTTGTGTGAATAT	NA	False	NA	NA	False	AATAAA	-21	NA	156381733	156349109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_156350435_156355854_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381491
transcript_103248.known	chrX	-	2379	5	FSM	ENSMUSG00000046873.19	ENSMUST00000139786.8	2379	5	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_3	45.1386752131695	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAGAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	156381647	156354214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381491
transcript_103252.known	chrX	-	529	4	FSM	ENSMUSG00000046873.19	ENSMUST00000149249.2	529	4	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_3	71.2242156073964	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTATTTATCCTGGGGCAT	NA	False	NA	NA	False	NA	NA	NA	156381675	156355943	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_156355983_156359079_156359184_156374349_156374552_156381491
transcript_103256.known	chrX	-	796	3	FSM	ENSMUSG00000046873.19	ENSMUST00000152826.3	796	3	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_1	4	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAGCAGAAATTGTCACA	NA	False	NA	NA	False	NA	NA	NA	156381639	156374052	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_156374552_156376720_156376870_156381491
transcript_103257.nic	chrX	-	719	2	ISM	ENSMUSG00000046873.19	ENSMUST00000149249.2	529	4	-35	18108	1	1	5prime_fragment	FALSE	canonical	3	97	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAGCAGAAATTGTCACAG	NA	False	NA	NA	False	NA	NA	NA	156381710	156374051	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_156374552_156381491
transcript_10327.known	chr10	+	953	12	FSM	ENSMUSG00000078427.4	ENSMUST00000219512.2	953	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1650.06371026512	664	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAATGTGTTTTATTAGGT	NA	False	NA	NA	False	AATAAA	-13	NA	128657765	128713493	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_128657841_128666819_128666854_128669180_128669281_128674315_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
transcript_103273.nic	chrX	+	1569	10	NIC	ENSMUSG00000041020.15	novel	3670	17	NA	NA	74	-1321	combination_of_known_junctions	FALSE	canonical	1	49	junction_5	37.9326889224701	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAGAACAAGAAAAGAAGGA	NA	False	NA	NA	False	NA	NA	NA	158197641	158272453	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_158197889_158226918_158226997_158228930_158229095_158242373_158242480_158245109_158245221_158252958_158253090_158255820_158255946_158265073_158265373_158265955_158266083_158272272
transcript_103283.nnic	chrX	+	3384	13	NNC	ENSMUSG00000044150.13	novel	3366	12	NA	NA	-6	-14	at_least_one_novel_splicesite	TRUE	canonical	3	151	junction_11	167.554634539172	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTACCTGGCAGTTGGT	NA	False	NA	9	True	AATAAA	-22	NA	158315657	158376063	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158349539_158350914_158351011_158357940_158358094_158374327_158374354_158375066
transcript_103288.known	chrX	+	3366	12	FSM	ENSMUSG00000044150.13	ENSMUST00000112464.8	3366	12	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_9	109.675027103931	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGTGAGAGCATTCTTTG	NA	False	NA	23	True	AATAAA	-36	NA	158315663	158376077	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158349539_158350914_158351011_158357940_158358094_158375066
transcript_103291.known	chrX	+	2513	11	FSM	ENSMUSG00000044150.13	ENSMUST00000057180.13	2513	11	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_8	176.193756983612	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTTGAAAGCTTTCTGT	NA	False	NA	NA	False	ATTAAA	-17	NA	158315714	158375390	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158350914_158351011_158357940_158358094_158375066
transcript_103299.nic	chrX	+	1447	4	ISM	ENSMUSG00000044150.13	ENSMUST00000057180.13	2513	11	-123	38645	-72	1860	5prime_fragment	FALSE	canonical	3	487	junction_1	64.3238334954903	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAGTAAAGAAGATTGCAGA	NA	False	NA	24	True	TATAAA	-45	NA	158315591	158336745	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239
transcript_1033.known	chr1	-	2763	13	FSM	ENSMUSG00000025920.20	ENSMUST00000027052.13	2763	13	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	35.7596140918774	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTATGAGTTGTTCCTT	NA	False	NA	NA	False	AGTAAA	-13	NA	16589530	16299033	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_16300091_16301226_16301316_16415927_16416236_16436302_16436364_16439978_16440111_16444897_16445036_16460044_16460258_16462740_16462849_16464274_16464435_16510546_16510683_16533258_16533419_16579565_16579633_16589396
transcript_103303.known	chrX	-	2848	11	FSM	ENSMUSG00000031299.11	ENSMUST00000033662.9	2848	11	0	0	0	0	multi-exon	FALSE	canonical	3	1235	junction_1	109.21011857882	2124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTCTTGAGTTCCCTTTC	NA	False	NA	-1	True	ATTAAA	-24	NA	158921409	158905204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
transcript_103311.known	chrX	-	629	5	FSM	ENSMUSG00000031299.11	ENSMUST00000126440.2	629	5	0	0	0	0	multi-exon	FALSE	canonical	3	1352	junction_1	53.8162382557533	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGTTTATTATTATACAT	NA	False	NA	NA	False	AATAAA	-35	NA	158921305	158912283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
transcript_103312.known	chrX	-	457	2	FSM	ENSMUSG00000031299.11	ENSMUST00000127535.2	457	2	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAGAATCAAAGTTTCTATA	NA	False	NA	NA	False	AATAAA	-10	NA	158921352	158919892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_158920249_158921251
transcript_103315.known	chrX	+	4133	33	FSM	ENSMUSG00000031295.14	ENSMUST00000033652.9	4133	33	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_12	13.3855098894289	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTCATTTGTAGACTCAT	NA	False	NA	7	True	CATAAA	-18	NA	159285429	159374137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_159285901_159306267_159306427_159310725_159310774_159311842_159312012_159312910_159312994_159314103_159314185_159315974_159316074_159324364_159324512_159326629_159326684_159327207_159327331_159332170_159332267_159335708_159335817_159337296_159337376_159340681_159340817_159341462_159341573_159342726_159342872_159343095_159343175_159345718_159345889_159347181_159347356_159357638_159357728_159358775_159358910_159359597_159359755_159360491_159360572_159360763_159360843_159360943_159361074_159361588_159361691_159364156_159364276_159365962_159365993_159367459_159367514_159369774_159369946_159371960_159372015_159373163_159373365_159373934
transcript_103316.known	chrX	+	3947	34	FSM	ENSMUSG00000031295.14	ENSMUST00000112377.8	3947	34	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	19.1295904422098	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTCATTTGTAGACTCAT	NA	False	NA	7	True	CATAAA	-18	NA	159285161	159374137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_159285289_159285742_159285901_159306267_159306427_159310725_159310774_159311842_159312012_159312910_159312994_159314103_159314185_159315974_159316074_159324364_159324512_159326629_159326684_159327207_159327331_159332170_159332267_159335708_159335817_159337296_159337376_159340681_159340817_159341462_159341573_159342726_159342872_159343095_159343175_159345718_159345889_159347181_159347356_159357638_159357728_159358775_159358910_159359597_159359755_159360491_159360572_159360763_159360843_159360943_159361074_159361588_159361691_159364156_159364276_159365962_159365993_159367459_159367514_159369774_159369946_159371960_159372015_159373163_159373365_159373934
transcript_103317.known	chrX	-	2017	2	FSM	ENSMUSG00000055691.6	ENSMUST00000069417.6	2017	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCATATGTATTTCTTCTC	NA	False	NA	NA	False	AATAAA	-15	NA	159690048	159685111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_159686987_159689906
transcript_103337.nnic	chrX	+	4542	26	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	14603	0	at_least_one_novel_splicesite	TRUE	canonical	3	8	junction_16	103.266459220794	44	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCACAGCAATTAACAGCT	4634	False	NA	2	True	AATAAA	-11	NA	159921866	160041192	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_159922056_159927758_159927837_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
transcript_103364.known	chrX	+	5010	15	FSM	ENSMUSG00000108981.2	ENSMUST00000207320.2	5010	15	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	5.75210697865378	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACATAAATATTTTGTTTT	NA	False	NA	NA	False	AATAAA	-29	NA	160081374	160149248	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_160081394_160083835_160084019_160090688_160090874_160106160_160106266_160107235_160107483_160109457_160109572_160114803_160114930_160116053_160116204_160117551_160117699_160123836_160123936_160136646_160136851_160137986_160138109_160140870_160141061_160143316_160143521_160146333
transcript_103365.known	chrX	+	387	1	FSM	ENSMUSG00000059461.8	ENSMUST00000118642.2	387	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	129	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGGGGTCATACCTGGCA	NA	False	NA	NA	False	NA	NA	NA	161349852	161350239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_161349900_161350200
transcript_10337.known	chr10	+	2298	7	FSM	ENSMUSG00000025354.6	ENSMUST00000219508.2	2298	7	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	133.703236892588	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGGGAAACATTTTAAA	4138	False	NA	7	True	TTTAAA	-8	NA	128641544	128653372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_128641596_128642036_128643490_128649906_128650014_128650434_128650555_128652580_128652742_128652826_128652930_128653069
transcript_103376.known	chrX	-	3715	11	FSM	ENSMUSG00000038344.15	ENSMUST00000112316.9	3715	11	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_9	58.6501491899211	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGCTTCTGTGTATTATT	NA	False	NA	NA	False	AGTAAA	-17	NA	161612450	161561914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_161564415_161565224_161565321_161567317_161567411_161569612_161569688_161570554_161570675_161573607_161573803_161580635_161580807_161590480_161590573_161594287_161594385_161594531_161594592_161612234
transcript_103379.known	chrX	-	3862	10	FSM	ENSMUSG00000038344.15	ENSMUST00000041370.11	3862	10	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_4	53.4535681747934	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGCTTCTGTGTATTATT	NA	False	NA	NA	False	AGTAAA	-17	NA	161612450	161561914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_161564415_161565224_161565321_161567317_161567411_161569612_161569688_161570554_161570675_161573607_161573803_161580635_161580807_161590480_161590573_161594287_161594592_161612234
transcript_103388.known	chrX	-	2525	6	FSM	ENSMUSG00000038344.15	ENSMUST00000112315.2	2525	6	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_4	64.8382603097893	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTATGTCTCATCTCCA	NA	False	NA	-7	True	AATAAA	-16	NA	161612450	161571913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_161573803_161580635_161580807_161590480_161590573_161594287_161594385_161594531_161594592_161612234
transcript_10339.known	chr10	-	2335	5	FSM	ENSMUSG00000047090.14	ENSMUST00000051011.14	2335	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	8.20060973342836	144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGGAGATGCGCCTCTA	5737	False	NA	-7	True	AATAAA	-18	NA	128640239	128635904	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128637099_128637219_128637381_128637804_128638387_128638966_128639227_128640101
transcript_103396.known	chrX	+	1862	12	FSM	ENSMUSG00000031353.14	ENSMUST00000112327.8	1862	12	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_3	868.427533053443	7949	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTGATTGGCTTTGCAGA	NA	False	NA	-32	True	NA	NA	NA	161543416	161561752	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_161543704_161544570_161544716_161551847_161551994_161552786_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
transcript_103397.known	chrX	+	2244	12	FSM	ENSMUSG00000031353.14	ENSMUST00000033720.12	2244	12	0	0	0	0	multi-exon	FALSE	canonical	3	2711	junction_3	173.446540695797	8987	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTATATCTGCATCATTT	NA	False	NA	NA	False	AATAAA	-17	NA	161543397	161562088	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
transcript_103398.known	chrX	+	1430	10	FSM	ENSMUSG00000031353.14	ENSMUST00000112326.8	1430	10	0	0	0	0	multi-exon	FALSE	canonical	3	2711	junction_3	178.323675750959	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	161543457	161558891	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731
transcript_103402.known	chrX	-	2087	9	FSM	ENSMUSG00000031357.4	ENSMUST00000033723.4	2087	9	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	15.2105021284637	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTTTATAGAATGGTCTT	NA	False	NA	NA	False	TATAAA	-15	NA	161671443	161640052	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_161641005_161642294_161642443_161642868_161642928_161646055_161646205_161655510_161655651_161661326_161661401_161665675_161665743_161665963_161666083_161671064
transcript_103409.nnic	chrX	-	877	5	NNC	ENSMUSG00000031357.4	novel	2087	9	NA	NA	-44	-18312	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	52.4994047585304	76	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGAGTCTTCCTTGACT	NA	False	NA	NA	False	NA	NA	NA	161671487	161659216	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_161659411_161661326_161661401_161665675_161665743_161665963_161666083_161671064
transcript_103414.nic	chrX	+	2191	19	NIC	ENSMUSG00000031360.15	novel	1665	15	NA	NA	7	0	combination_of_known_junctions	TRUE	canonical	2	23	junction_1	48.2283982220199	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCGGGCCCGGCAGAAAGT	NA	False	NA	11	True	ATTAAA	-17	NA	161684247	161814315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_161684391_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706_161719802_161724642_161724706_161724796_161724841_161758178_161758276_161779700_161779757_161783057_161783155_161794057_161794203_161812762_161812875_161814109
transcript_103415.known	chrX	+	3353	19	FSM	ENSMUSG00000031360.15	ENSMUST00000033727.14	3353	19	0	0	0	0	multi-exon	FALSE	canonical	2	133	junction_1	30.7828415409191	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGGGCAGACTTGTACTT	NA	False	NA	NA	False	AATAAA	-22	NA	161684627	161815504	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_161684744_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706_161719802_161724642_161724706_161724796_161724841_161758178_161758276_161779700_161779757_161783057_161783155_161794057_161794203_161812762_161812875_161814109
transcript_103416.nnic	chrX	+	2181	19	NNC	ENSMUSG00000031360.15	novel	3289	19	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	50.5288390945895	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCGGGCCCGGCAGAAAGT	NA	False	NA	11	True	ATTAAA	-17	NA	161684571	161814315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_161684705_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706_161719802_161724642_161724706_161724796_161724841_161758178_161758276_161779700_161779757_161783057_161783155_161794057_161794203_161812762_161812875_161814109
transcript_103417.known	chrX	+	3099	19	FSM	ENSMUSG00000031360.15	ENSMUST00000112301.8	3099	19	0	0	0	0	multi-exon	FALSE	canonical	2	41	junction_1	44.8724185955837	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTATGCAGTGTCATTTAT	NA	False	NA	NA	False	NA	NA	NA	161684865	161815321	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_161684911_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706_161719802_161724642_161724706_161724796_161724841_161758178_161758276_161779700_161779757_161783057_161783155_161794057_161794203_161812762_161812875_161814109
transcript_103440.nic	chrX	+	609	2	ISM	ENSMUSG00000031360.15	ENSMUST00000112301.8	3099	19	-285	128613	-20	142	5prime_fragment	FALSE	canonical	3	41	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTCTTCTCTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	161684580	161686708	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_+_161684911_161686429
transcript_103441.known	chrX	-	480	3	FSM	ENSMUSG00000040808.5	ENSMUST00000038769.3	480	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTACTGACATTTCAGAGG	NA	False	NA	NA	False	AATAAA	-43	NA	161747595	161744987	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_161745237_161747057_161747202_161747508
transcript_103442.known	chrX	+	3199	5	FSM	ENSMUSG00000031367.16	ENSMUST00000112294.9	3199	5	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_1	15.8192920195564	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTCATGTGAATGAC	NA	False	NA	-2	True	AATAAA	-13	NA	162692140	162712542	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_162692270_162694324_162694504_162699470_162699580_162700701_162700840_162709898
transcript_103444.nnic	chrX	+	2133	5	NNC	ENSMUSG00000031367.16	novel	3199	5	NA	NA	-49	5	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_4	59.8351903147303	182	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGTGAATGACTTCTT	NA	False	NA	3	True	AATAAA	-18	NA	162692088	162712547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_162692270_162694324_162694504_162699470_162699580_162700701_162700840_162711021
transcript_103445.known	chrX	+	1785	5	FSM	ENSMUSG00000031367.16	ENSMUST00000033734.14	1785	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	61.936963923008	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACTGTGGTGTGCTTTTC	NA	False	NA	2	True	AATAAA	-9	NA	162692137	162716355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_162692270_162694324_162694504_162699470_162699580_162700701_162700840_162715128
transcript_103452.known	chrX	-	460	6	FSM	ENSMUSG00000031370.13	ENSMUST00000147928.8	460	6	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_5	268.200372855818	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGGGAAGAACAGCAGAGAA	NA	False	NA	-16	True	TTTAAA	-19	NA	162741548	162736635	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269_162741416_162741522
transcript_103462.known	chrX	-	3867	5	FSM	ENSMUSG00000031370.13	ENSMUST00000090840.10	3867	5	0	0	0	0	multi-exon	FALSE	canonical	3	635	junction_1	78.6924392810389	742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTTTTAAAAACTTTTTA	NA	False	NA	NA	False	AATAAA	-15	NA	162741594	162733381	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269
transcript_103463.known	chrX	-	504	4	FSM	ENSMUSG00000031370.13	ENSMUST00000139166.2	504	4	0	0	0	0	multi-exon	FALSE	canonical	3	635	junction_1	90.1566537878499	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAGAGAAGAGAGAAAGAGA	NA	False	NA	-11	True	NA	NA	NA	162741158	162736586	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911
transcript_103464.known	chrX	-	382	4	FSM	ENSMUSG00000031370.13	ENSMUST00000127370.3	382	4	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_3	246.780604316196	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCAGTACTAACTGAAACAC	NA	False	NA	NA	False	AAGAAA	-38	NA	162741657	162739467	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_162739550_162740911_162740992_162741269_162741416_162741583
transcript_103465.known	chrX	-	3436	8	FSM	ENSMUSG00000031373.5	ENSMUST00000033739.5	3436	8	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	1.92724822331886	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCACAAGAAAAGAAGAGCTT	NA	False	NA	NA	False	AATAAA	-37	NA	162810993	162759817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_162762367_162770093_162770250_162771345_162771409_162773420_162773517_162774346_162774466_162783234_162783433_162797798_162797991_162810930
transcript_10347.known	chr10	-	1051	4	FSM	ENSMUSG00000025353.6	ENSMUST00000219215.2	1051	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	384.57248991575	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTCATAATGCTGGGGA	NA	False	NA	7	True	AATAAA	-45	NA	128657475	128654350	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128654885_128655822_128655975_128656129_128656430_128657410
transcript_103470.known	chrX	-	1783	4	FSM	ENSMUSG00000040749.12	ENSMUST00000037928.9	1783	4	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	206.108385726216	709	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCAGGTTTTTCTCACTT	NA	False	NA	-18	True	AATAAA	-15	NA	162859117	162853700	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_162855224_162856285_162856347_162858573_162858666_162859010
transcript_103471.known	chrX	-	1712	4	FSM	ENSMUSG00000040749.12	ENSMUST00000071667.9	1712	4	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_3	112.11402925395	915	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCAGGTTTTTCTCACTT	NA	False	NA	-18	True	AATAAA	-15	NA	162859146	162853700	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_162855224_162856285_162856347_162858573_162858666_162859110
transcript_103472.known	chrX	-	803	4	FSM	ENSMUSG00000040749.12	ENSMUST00000134272.2	803	4	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	219.75794765049	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAACTTACATGTTGTCC	NA	False	NA	NA	False	NA	NA	NA	162859489	162854880	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_162855224_162856285_162856347_162858573_162858666_162859182
transcript_103483.known	chrX	+	1599	10	FSM	ENSMUSG00000031379.14	ENSMUST00000033749.9	1599	10	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_3	17.8270151493682	1600	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATGTGCTTTTTTATATG	NA	False	NA	NA	False	TATAAA	-15	NA	163052426	163156007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_163052674_163054598_163054728_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163125469_163125515_163141143_163141227_163152041_163152109_163155448
transcript_103498.nnic	chrX	+	1195	9	NIC	ENSMUSG00000031379.14	novel	1599	10	NA	NA	-29	-224	combination_of_known_splicesites	FALSE	canonical	3	28	junction_1	80.2507788124203	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTTTTTGTAATGAAT	NA	False	NA	NA	False	AATAAA	-23	NA	163052477	163155783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_163052674_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163125469_163125515_163141143_163141227_163152041_163152109_163155448
transcript_103508.known	chrX	+	2228	7	FSM	ENSMUSG00000031379.14	ENSMUST00000123343.2	2228	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	131.536644661816	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAAAGTAAGTTTGAGTAA	NA	False	NA	NA	False	AATAAA	-21	NA	163052568	163092773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_163052674_163054598_163054728_163063124_163063218_163078910_163078995_163083219_163083427_163090199_163090318_163091281
transcript_103523.nnic	chrX	+	1163	6	NNC	ENSMUSG00000031380.11	novel	918	4	NA	NA	8820	201	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_4	1.72046505340853	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	163165193	163183977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_163165371_163168799_163169026_163174597_163174789_163177428_163177578_163178928_163179030_163183658
transcript_103524.nnic	chrX	+	1185	6	NNC	ENSMUSG00000031380.11	novel	918	4	NA	NA	8842	201	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3.72021504754765	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	163165215	163183977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_163165415_163168799_163169026_163174597_163174789_163177428_163177578_163178928_163179030_163183658
transcript_103525.known	chrX	+	3903	6	FSM	ENSMUSG00000031381.17	ENSMUST00000151911.9	3903	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	95.333939392013	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGTCTCAGTTTGTCTT	NA	False	NA	28	True	AATAAA	-28	NA	163202782	163216912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_163202837_163205579_163206669_163210927_163211061_163211535_163211669_163211806_163212014_163214625
transcript_103526.known	chrX	+	3594	6	FSM	ENSMUSG00000031381.17	ENSMUST00000033754.15	3594	6	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_2	38.4052079801685	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGTCTCAGTTTGTCTT	NA	False	NA	28	True	AATAAA	-28	NA	163202782	163216912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_163202837_163205579_163206360_163210927_163211061_163211535_163211669_163211806_163212014_163214625
transcript_103527.known	chrX	+	3212	6	FSM	ENSMUSG00000031381.17	ENSMUST00000112257.10	3212	6	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	78.77715404862	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTATTTTTGTCTCAGTTT	NA	False	NA	23	True	AATAAA	-23	NA	163202782	163216907	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_163202837_163205579_163205983_163210927_163211061_163211535_163211669_163211806_163212014_163214625
transcript_103530.nic	chrX	+	1257	6	ISM	ENSMUSG00000031382.15	ENSMUST00000033755.6	1369	7	7621	0	7621	0	3prime_fragment	FALSE	canonical	1	1	junction_1	1.62480768092719	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGATTTCTTTTAATTTA	NA	False	NA	NA	False	AATAAA	-13	NA	163228674	163242160	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_+_163228805_163233450_163233559_163235894_163236046_163237383_163237519_163238792_163238985_163241619
transcript_103532.known	chrX	+	1139	7	FSM	ENSMUSG00000031384.3	ENSMUST00000033756.3	1139	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.25830573921179	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGACGAGTGGTTTCTTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	163289322	163322748	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_163289583_163297924_163298005_163312403_163312512_163314577_163314729_163316452_163316588_163318365_163318558_163322535
transcript_103533.known	chrX	-	2479	15	FSM	ENSMUSG00000061778.11	ENSMUST00000112247.9	2479	15	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	17.508598470699	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGTTCTGGTGCTTTTCAT	NA	False	NA	NA	False	TATAAA	-39	NA	163763293	163719313	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_163720300_163722638_163722742_163726426_163726557_163727212_163727310_163727968_163728066_163730237_163730351_163731062_163731240_163734846_163734972_163739474_163739514_163741751_163741813_163745047_163745203_163746922_163747010_163747977_163748134_163762989_163763060_163763210
transcript_103534.known	chrX	-	2015	15	FSM	ENSMUSG00000061778.11	ENSMUST00000004715.2	2015	15	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_12	10.321366781822	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAATGTAGTCTGC	NA	False	NA	NA	False	AATACA	-40	NA	163763331	163721204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_163721689_163722638_163722742_163726426_163726557_163727212_163727310_163727968_163728066_163730237_163730351_163731062_163731240_163734846_163734972_163739474_163739514_163741751_163741813_163745047_163745203_163746922_163747010_163747977_163748134_163762989_163763060_163763210
transcript_103539.known	chrX	-	1322	7	FSM	ENSMUSG00000061778.11	ENSMUST00000146813.8	1322	7	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	8.95203266799719	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGATCAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	163763324	163738834	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_163739514_163741751_163741813_163745047_163745203_163746922_163747010_163747977_163748134_163762989_163763060_163763210
transcript_103541.known	chrX	-	2487	15	FSM	ENSMUSG00000061778.11	ENSMUST00000112248.9	2487	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	17.7207649441011	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTTGTCTCTAATTGATA	NA	False	NA	NA	False	AATAAA	-18	NA	163763371	163719164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_163720081_163722638_163722742_163726426_163726557_163727212_163727310_163727968_163728066_163730237_163730351_163731062_163731240_163734846_163734972_163739474_163739514_163741751_163741813_163745047_163745203_163746922_163747010_163747977_163748134_163762989_163763060_163763210
transcript_103542.known	chrX	-	1713	5	FSM	ENSMUSG00000061778.11	ENSMUST00000124523.8	1713	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	10.4283268073071	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTAGGCGCCACAGTCACC	NA	False	NA	NA	False	AATAAA	-23	NA	163763321	163743913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_163745203_163746922_163747010_163747977_163748134_163762989_163763060_163763210
transcript_103545.known	chrX	+	2953	9	FSM	ENSMUSG00000047757.18	ENSMUST00000167446.8	2953	9	0	0	0	0	multi-exon	TRUE	canonical	3	98	junction_5	7.72981241687015	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTCTTGTTTTCTTTTAC	NA	False	NA	NA	False	ATTAAA	-17	NA	163763587	163780265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_163763807_163765432_163766450_163769555_163769709_163770700_163770794_163774540_163774685_163775726_163775891_163778339_163778768_163778882_163779118_163779765
transcript_10355.known	chr10	-	666	3	FSM	ENSMUSG00000025353.6	ENSMUST00000217685.2	666	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	430	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTGTATATTTTTCTTAA	NA	False	NA	-63	True	NA	NA	NA	128657460	128654420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128654885_128655822_128655975_128657410
transcript_103552.nnic	chrX	+	1390	6	NNC	ENSMUSG00000040621.15	novel	1389	5	NA	NA	-58	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	18.6719040271741	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTAAGCCACGTGTCATT	NA	False	NA	NA	False	CATAAA	-2	NA	164953391	164972800	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_164953547_164959840_164959999_164960055_164960076_164961787_164961827_164963348_164963806_164972239
transcript_103559.known	chrX	+	1928	5	FSM	ENSMUSG00000040621.15	ENSMUST00000087169.11	1928	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	20.8371663140649	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGGACTGGATTTGATCT	NA	False	NA	NA	False	NA	NA	NA	164953490	164973506	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_164953547_164961529_164961639_164961787_164961827_164963348_164963806_164972239
transcript_103563.known	chrX	+	1389	5	FSM	ENSMUSG00000040621.15	ENSMUST00000130880.9	1389	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	17.0293863659264	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTAAGCCACGTGTCATT	NA	False	NA	NA	False	CATAAA	-2	NA	164953449	164972800	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_164953547_164959840_164960076_164961787_164961827_164963348_164963806_164972239
transcript_103565.known	chrX	+	1862	4	FSM	ENSMUSG00000040621.15	ENSMUST00000056410.11	1862	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	17.1529071070248	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGACTGGATTTGATCTAC	NA	False	NA	NA	False	NA	NA	NA	164953449	164973508	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_164953547_164961787_164961827_164963348_164963806_164972239
transcript_103568.known	chrX	-	4453	23	FSM	ENSMUSG00000040586.9	ENSMUST00000049501.9	4453	23	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_14	25.8655535317559	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACTCTGACTTCTTTTTT	NA	False	NA	NA	False	AATAAA	-11	NA	165223700	165173028	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_165174055_165174886_165174955_165175413_165175567_165176172_165176328_165183915_165184030_165186537_165186636_165188421_165188579_165188992_165189605_165191584_165191697_165192483_165192615_165193601_165193792_165194811_165194904_165196296_165196371_165197971_165198092_165207971_165208079_165209815_165209990_165210163_165210301_165211523_165211632_165214684_165214716_165214797_165214867_165218330_165218532_165223024_165223124_165223275
transcript_103570.known	chrX	+	1613	5	FSM	ENSMUSG00000079317.11	ENSMUST00000116495.8	1613	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	101.671038157383	1294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGGTCATTTGATGCC	NA	False	NA	9	True	AATAAA	-14	NA	165223569	165236136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_165223836_165229786_165229899_165232783_165232929_165233624_165233711_165235132
transcript_103573.known	chrX	+	1294	4	FSM	ENSMUSG00000079317.11	ENSMUST00000112192.8	1294	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	114.126635317479	1054	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATGTGGTCATTTGATG	NA	False	NA	7	True	AATAAA	-12	NA	165223771	165236134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_165223836_165229786_165229899_165232783_165232900_165235132
transcript_103578.known	chrX	-	876	5	FSM	ENSMUSG00000079316.11	ENSMUST00000049435.15	876	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.29903810567666	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCTGCACCGAAAGCCCAA	NA	False	NA	NA	False	NA	NA	NA	165262642	165240745	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_165241340_165241887_165242006_165245310_165245339_165248089_165248119_165262535
transcript_103593.known	chrX	-	4050	5	FSM	ENSMUSG00000051224.14	ENSMUST00000112188.8	4050	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_2	3.35410196624968	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTTATTCTCCAATATTT	NA	False	NA	-2	True	AATAAA	-20	NA	165293474	165282807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_165286402_165288701_165288833_165290704_165290743_165291901_165292003_165293288
transcript_103594.known	chrX	-	2704	12	FSM	ENSMUSG00000000402.3	ENSMUST00000000412.3	2704	12	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_6	3.09892009982897	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTGTTGAAACACTTTGT	NA	False	NA	NA	False	AATAAA	-15	NA	165368716	165306002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_165306968_165310309_165310576_165314967_165315070_165319195_165319277_165321409_165321731_165329416_165329540_165331818_165331954_165335420_165335541_165339965_165340086_165345937_165346031_165351404_165351518_165368451
transcript_103599.nnic	chrX	-	788	5	NNC	ENSMUSG00000000402.3	novel	2704	12	NA	NA	-36	-33676	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	7.43303437365925	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTGTTGTCCTAGTGTG	NA	False	NA	NA	False	AATAAA	-44	NA	165368752	165339678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_165339840_165339965_165340086_165345937_165346031_165351404_165351518_165368451
transcript_10360.known	chr10	+	4133	7	FSM	ENSMUSG00000025354.6	ENSMUST00000217745.2	4133	7	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_3	32.4242707448191	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATATGACTTTTGGAGCCC	4016	False	NA	NA	False	GATAAA	-30	NA	128641422	128655128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_128641553_128642036_128643490_128649906_128650014_128650434_128650555_128652580_128652742_128652826_128652930_128653069
transcript_103600.nic	chrX	-	914	4	ISM	ENSMUSG00000000402.3	ENSMUST00000000412.3	2704	12	-36	33676	-36	-33676	5prime_fragment	FALSE	canonical	3	11	junction_3	4.96655480858378	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTGTTGTCCTAGTGTG	NA	False	NA	NA	False	AATAAA	-44	NA	165368752	165339678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_165340086_165345937_165346031_165351404_165351518_165368451
transcript_103603.known	chrX	+	801	1	FSM	ENSMUSG00000067147.8	ENSMUST00000118791.2	801	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACACTGAATTTTCTGT	NA	False	NA	NA	False	AAAAAG	-36	NA	165637206	165638007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_165637200_165638000
transcript_103604.known	chrX	-	693	5	FSM	ENSMUSG00000086008.9	ENSMUST00000126769.8	693	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.08972473588517	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGAAATAAGATCACCACAT	NA	False	NA	NA	False	NA	NA	NA	165853376	165846331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_165846572_165847832_165848002_165851275_165851405_165852131_165852199_165853288
transcript_103605.nnic	chrX	-	698	4	NIC	ENSMUSG00000086008.9	novel	693	5	NA	NA	-27	-35	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	1.4142135623731	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTGATTTGCAATTCCTT	NA	False	NA	NA	False	AGTAAA	-45	NA	165853403	165846224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_165846572_165847832_165848002_165852131_165852199_165853288
transcript_103608.known	chrX	-	864	3	FSM	ENSMUSG00000049775.17	ENSMUST00000112175.2	864	3	0	0	0	0	multi-exon	FALSE	canonical	1	16	junction_2	587.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAAAAGAACTTGCATGTT	NA	False	NA	NA	False	NA	NA	NA	165991823	165990287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_165990532_165990932_165991048_165991318
transcript_103609.known	chrX	-	698	3	FSM	ENSMUSG00000049775.17	ENSMUST00000112176.8	698	3	0	0	0	0	multi-exon	FALSE	canonical	1	19	junction_2	586	636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGGTGTGTCTGCTTGGT	NA	False	NA	-2	True	AATAAA	-13	NA	165992145	165990090	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_165990532_165990932_165991048_165992003
transcript_10361.known	chr10	-	724	4	FSM	ENSMUSG00000025353.6	ENSMUST00000219524.2	724	4	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_3	240.049994792751	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTCCAGTCTTCATAGGG	NA	False	NA	NA	False	GATAAA	-45	NA	128657514	128654591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128654885_128655822_128655975_128656129_128656305_128657410
transcript_103610.known	chrX	-	768	3	FSM	ENSMUSG00000049775.17	ENSMUST00000112172.4	768	3	0	0	0	0	multi-exon	FALSE	canonical	3	1191	junction_1	25.5	8054	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTGTCTGCTTGGTGA	NA	False	NA	0	True	AATAAA	-15	NA	165992311	165990088	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_165990532_165990932_165991048_165992101
transcript_103611.known	chrX	-	3699	7	FSM	ENSMUSG00000025742.6	ENSMUST00000026839.5	3699	7	0	0	0	0	multi-exon	TRUE	canonical	3	187	junction_5	11.6535640709422	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTCTTGTCATCCTTTTG	NA	False	NA	-3	True	AATAAA	-24	NA	166165745	166129317	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_166131995_166133510_166133671_166135131_166135306_166146540_166146666_166148114_166148214_166156998_166157183_166165465
transcript_103619.known	chrX	-	599	3	FSM	ENSMUSG00000025742.6	ENSMUST00000145456.2	599	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	111.5	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATTTATGTCCTAAGAT	NA	False	NA	NA	False	AATAAA	-25	NA	166165706	166155404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_166155579_166156998_166157183_166165465
transcript_10362.known	chr10	+	918	11	FSM	ENSMUSG00000078427.4	ENSMUST00000105230.4	918	11	0	0	0	0	multi-exon	FALSE	canonical	3	1529	junction_8	1099.33345259753	6833	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAGAAAATGTGTTTT	NA	False	NA	NA	False	AATAAA	-6	NA	128657762	128713486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_128657841_128669180_128669281_128674312_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
transcript_103620.known	chrX	-	2399	13	FSM	ENSMUSG00000031358.18	ENSMUST00000033725.16	2399	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_12	12.277746354912	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCAAGAGGAGTTTTGCT	NA	False	NA	NA	False	AATAAA	-23	NA	167456894	167437112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_167437965_167439958_167440044_167441610_167441711_167445426_167445537_167447038_167447302_167449938_167450098_167451626_167451788_167452485_167452612_167453215_167453308_167454138_167454240_167454790_167454887_167455258_167455342_167456723
transcript_103623.nic	chrX	-	2439	12	ISM	ENSMUSG00000031358.18	ENSMUST00000033725.16	2399	13	1342	0	-37	0	3prime_fragment	TRUE	canonical	3	23	junction_11	7.54928708800971	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCAAGAGGAGTTTTGCT	NA	False	NA	NA	False	AATAAA	-23	NA	167455552	167437112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_167437965_167439958_167440044_167441610_167441711_167445426_167445537_167447038_167447302_167449938_167450098_167451626_167451788_167452485_167452612_167453215_167453308_167454138_167454240_167454790_167454887_167455258
transcript_103624.known	chrX	-	2316	12	FSM	ENSMUSG00000031358.18	ENSMUST00000112137.2	2316	12	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_9	6.17646827325928	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCAAGAGGAGTTTTGCT	NA	False	NA	NA	False	AATAAA	-23	NA	167456894	167437112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_167437965_167439958_167440044_167441610_167441711_167445426_167445537_167447038_167447302_167449938_167450098_167451626_167451788_167452485_167452612_167453215_167453308_167454138_167454240_167454790_167454887_167456723
transcript_103626.nic	chrX	-	1709	12	ISM	ENSMUSG00000031358.18	ENSMUST00000033725.16	2399	13	1342	730	-37	-725	3prime_fragment	FALSE	canonical	3	23	junction_11	7.54928708800971	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTGCACTATGTGGCTTT	NA	False	NA	NA	False	ATTAAA	-22	NA	167455552	167437842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_167437965_167439958_167440044_167441610_167441711_167445426_167445537_167447038_167447302_167449938_167450098_167451626_167451788_167452485_167452612_167453215_167453308_167454138_167454240_167454790_167454887_167455258
transcript_103629.known	chrX	-	1336	3	FSM	ENSMUSG00000031358.18	ENSMUST00000145564.2	1336	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	1	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAGAAGCAAGAGGAGTT	4565	False	NA	NA	False	AATAAA	-18	NA	167442014	167437117	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_167437965_167439958_167440044_167441610
transcript_10363.known	chr10	-	1573	4	FSM	ENSMUSG00000025353.6	ENSMUST00000026409.5	1573	4	0	0	0	0	multi-exon	FALSE	canonical	3	462	junction_3	176.577335905703	1614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAATCAGTTTCCACTC	NA	False	NA	NA	False	AATAAA	-15	NA	128657463	128653770	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128654885_128655822_128655975_128656129_128656384_128657410
transcript_103639.known	chrX	-	403	2	FSM	ENSMUSG00000086695.2	ENSMUST00000124513.2	403	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACCTCTATGGAGAGTTCA	NA	False	NA	NA	False	AATAAA	-16	NA	168769935	168768796	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_168769003_168769738
transcript_10364.known	chr10	+	423	4	FSM	ENSMUSG00000078427.4	ENSMUST00000220150.2	423	4	0	0	0	0	multi-exon	FALSE	canonical	3	3949	junction_2	461.36777328095	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGTGGTGGGATTAAAATC	NA	False	NA	NA	False	NA	NA	NA	128657776	128675882	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_128657841_128669180_128669281_128674312_128674360_128675670
transcript_10365.known	chr10	+	1084	12	FSM	ENSMUSG00000078427.4	ENSMUST00000220381.2	1084	12	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_9	1706.39307380042	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTATTAGGTGTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	128657800	128713498	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_128657841_128669180_128669281_128674315_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128687606_128687802_128689051_128689121_128708289_128708380_128713201
transcript_10366.known	chr10	-	4062	3	FSM	ENSMUSG00000025352.7	ENSMUST00000026408.7	4062	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTCCATGGTGAGCTCTT	9995	False	NA	NA	False	AATAAA	-19	NA	128727587	128718163	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128721356_128722016_128722415_128727115
transcript_103660.nnic	chrY	+	1013	3	NNC	ENSMUSG00000096768.9	novel	774	4	NA	NA	35	5937	intron_retention	FALSE	canonical	3	68	junction_1	974.5	157	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAGATGTGTGTGTGTC	4160	False	NA	NA	False	AATAAA	-18	NA	90796214	90833671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrY_+_90796989_90804564_90804687_90833554
transcript_10381.known	chr10	+	1043	8	FSM	ENSMUSG00000025351.15	ENSMUST00000105229.9	1043	8	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_1	1345.38160886396	6227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGATGGTCTCAGTTTATC	NA	False	NA	35	True	ATTAAA	-27	NA	128744688	128748691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_128744922_128746263_128746341_128747320_128747510_128747663_128747739_128747836_128747933_128748029_128748171_128748306_128748391_128748543
transcript_10382.known	chr10	+	1109	9	FSM	ENSMUSG00000025351.15	ENSMUST00000219317.2	1109	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	1695.03832921265	6390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGATGGTCTCAGTTTATC	NA	False	NA	35	True	ATTAAA	-27	NA	128736857	128748691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_128737005_128744769_128744922_128746263_128746341_128747320_128747510_128747663_128747739_128747836_128747933_128748029_128748171_128748306_128748391_128748543
transcript_10385.known	chr10	-	550	4	FSM	ENSMUSG00000090247.8	ENSMUST00000026405.10	550	4	0	0	0	0	multi-exon	FALSE	canonical	3	559	junction_1	37.4788829431544	4803	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGGTGTGTTTGAAGGAG	NA	False	NA	-1	True	AATAAA	-19	NA	128759393	128755782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128755977_128756427_128756561_128758522_128758596_128759243
transcript_10386.known	chr10	-	361	2	FSM	ENSMUSG00000090247.8	ENSMUST00000143628.2	361	2	0	0	0	0	multi-exon	FALSE	canonical	3	623	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTCAGCTTTCACTCTCT	NA	False	NA	NA	False	NA	NA	NA	128759393	128758384	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_128758596_128759243
transcript_10390.nnic	chr10	+	804	4	NNC	ENSMUSG00000112742.2	novel	415	3	NA	NA	-42	922	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	29.0095769627128	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAATGTGGTAAAGCTTTC	NA	False	NA	NA	False	NA	NA	NA	130378173	130408584	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_130378320_130407161_130407289_130407478_130407540_130408114
transcript_10392.known	chr10	+	415	3	FSM	ENSMUSG00000112742.2	ENSMUST00000218557.2	415	3	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	6.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAGAAAAAAAGGCAT	NA	False	NA	NA	False	NA	NA	NA	130378215	130407662	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_130378320_130407161_130407289_130407478
transcript_10396.known	chr11	-	3969	33	FSM	ENSMUSG00000023764.19	ENSMUST00000081318.13	3969	33	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_15	28.2531628483874	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATAGGGTTGAAAAGTTAAG	8035	False	NA	36	True	NA	NA	NA	3143407	3081849	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_3082132_3082215_3082328_3082886_3082966_3083071_3083208_3084317_3084502_3084625_3084731_3085282_3085543_3085653_3085831_3085942_3086018_3086624_3086700_3086945_3087107_3090136_3090234_3092307_3092411_3093259_3093337_3093694_3093791_3094216_3094293_3094791_3094971_3095240_3095323_3096161_3096293_3103431_3103499_3105398_3105497_3106771_3106865_3107865_3107937_3109984_3110147_3114556_3114714_3115575_3115679_3120586_3120705_3127426_3127522_3129396_3129508_3136064_3136137_3137239_3137411_3138940_3139057_3143359
transcript_10405.known	chr11	-	3898	32	FSM	ENSMUSG00000023764.19	ENSMUST00000066391.14	3898	32	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_15	27.928964448237	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTACTTTTCATACAAAAT	7979	False	NA	5	True	AATGAA	-22	NA	3143463	3081880	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_3082132_3082215_3082328_3082886_3082966_3083071_3083208_3084317_3084502_3084625_3084731_3085282_3085543_3085653_3085831_3085942_3086018_3086624_3086700_3086945_3087107_3090136_3090234_3092307_3092411_3093259_3093337_3094216_3094293_3094791_3094971_3095240_3095323_3096161_3096293_3103431_3103499_3105398_3105497_3106771_3106865_3107865_3107937_3109984_3110147_3114556_3114714_3115575_3115679_3120586_3120705_3127426_3127522_3129396_3129508_3136064_3136137_3137239_3137411_3138940_3139057_3143359
transcript_10406.known	chr11	-	831	5	FSM	ENSMUSG00000023764.19	ENSMUST00000118627.2	831	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	37.5724300518346	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACACTCTGCACTTTGTT	8018	False	NA	NA	False	NA	NA	NA	3143424	3135567	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_3135975_3136064_3136137_3137239_3137411_3138940_3139057_3143359
transcript_10407.known	chr11	+	3565	18	FSM	ENSMUSG00000020454.18	ENSMUST00000020734.11	3565	18	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	69.1571601699214	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGATATGGCTGGTACTGT	3573	False	NA	7	True	ATTAAA	-23	NA	3152391	3194581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_3152557_3153629_3153751_3163259_3163334_3165591_3165720_3170243_3170531_3171092_3171295_3174631_3174808_3177394_3177531_3177705_3177886_3179868_3180102_3184461_3184646_3185580_3185661_3186213_3186354_3189400_3189486_3190894_3191028_3192376_3192719_3193182_3193351_3193850
transcript_10408.known	chr11	-	1546	9	FSM	ENSMUSG00000020457.14	ENSMUST00000020741.12	1546	9	0	0	0	0	multi-exon	FALSE	canonical	3	1733	junction_5	106.427719016241	6966	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGTGAGGTTTGCTGTG	NA	False	NA	-1	True	TATAAA	-34	NA	3216393	3199906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_3200366_3202159_3202283_3202643_3202812_3204511_3204643_3206542_3206713_3209305_3209376_3212488_3212665_3214766_3214891_3216268
transcript_10409.known	chr11	+	1904	6	FSM	ENSMUSG00000020453.18	ENSMUST00000134089.8	1904	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	36.2513448026415	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTGCTCCCCCGAG	5294	False	NA	14	True	ATTAAA	-16	NA	3239280	3259083	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_3239348_3243279_3243344_3244455_3244548_3249033_3249206_3256287_3256361_3257647
transcript_10410.known	chr11	+	2573	6	FSM	ENSMUSG00000034614.15	ENSMUST00000045153.11	2573	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	4.60434577328853	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTTTGTGGTGATGAGG	NA	False	NA	NA	False	TATAAA	-25	NA	3280400	3292971	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_3281005_3281914_3282032_3282108_3282229_3283208_3283413_3283504_3283584_3291522
transcript_10411.known	chr11	+	920	6	FSM	ENSMUSG00000034614.15	ENSMUST00000136536.8	920	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	5.41848687365763	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCACCCTCCTCACGGGC	NA	False	NA	NA	False	NA	NA	NA	3280786	3291683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_3281005_3281914_3282032_3282108_3282250_3283208_3283413_3283504_3283584_3291522
transcript_10413.known	chr11	+	3702	5	FSM	ENSMUSG00000020453.18	ENSMUST00000110043.8	3702	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	207.771960331513	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTGCTCCCCCGAG	6006	False	NA	14	True	ATTAAA	-16	NA	3239992	3259083	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_3241885_3243279_3243344_3249033_3249206_3256222_3256361_3257647
transcript_10414.known	chr11	+	3173	5	FSM	ENSMUSG00000020453.18	ENSMUST00000093402.12	3173	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	189.564467925822	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTGCTCCCCCGAG	6470	False	NA	14	True	ATTAAA	-16	NA	3240456	3259083	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_3241885_3243279_3243344_3249033_3249206_3256287_3256361_3257647
transcript_10418.known	chr11	+	1853	4	FSM	ENSMUSG00000020453.18	ENSMUST00000101644.10	1853	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	164.248456782874	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTGCTCCCCCGAG	5180	False	NA	14	True	ATTAAA	-16	NA	3239166	3259083	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_3239348_3243279_3243344_3249033_3249206_3257647
transcript_10419.known	chr11	+	3118	4	FSM	ENSMUSG00000020453.18	ENSMUST00000057089.13	3118	4	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_3	67.6576348652209	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTGCTCCCCCGAG	6452	False	NA	14	True	ATTAAA	-16	NA	3240438	3259083	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_3241885_3243279_3243344_3249033_3249206_3257647
transcript_10422.known	chr11	+	617	4	FSM	ENSMUSG00000034614.15	ENSMUST00000136474.2	617	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	6.0184900284226	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCACGGGCCAGGCTGGC	NA	False	NA	NA	False	NA	NA	NA	3282450	3291692	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_3282615_3283208_3283413_3283504_3283584_3291522
transcript_10424.known	chr11	+	844	3	FSM	ENSMUSG00000020453.18	ENSMUST00000144396.8	844	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	24	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTCTTAATTGGGCGGGA	5215	False	NA	NA	False	GGGGCT	-11	NA	3239201	3245089	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_3239348_3243279_3243344_3244455
transcript_10425.known	chr11	+	2930	3	FSM	ENSMUSG00000020453.18	ENSMUST00000094471.10	2930	3	0	0	0	0	multi-exon	TRUE	canonical	3	69	junction_2	176	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGGCTTTGTGTGTTTT	6006	False	NA	NA	False	GATAAA	-17	NA	3239992	3245429	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_3241885_3243279_3243344_3244455
transcript_10426.known	chr11	+	456	3	FSM	ENSMUSG00000020453.18	ENSMUST00000153603.8	456	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	34.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCTGAGACAGGGATGGAC	8208	False	NA	NA	False	NA	NA	NA	3242194	3244668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_3242374_3243279_3243344_3244455
transcript_10428.known	chr11	+	652	3	FSM	ENSMUSG00000020453.18	ENSMUST00000136285.2	652	3	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_1	30	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCACCTTTCTGAAGGCCC	8881	False	NA	NA	False	NA	NA	NA	3242867	3244895	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_3243016_3243279_3243344_3244455
transcript_10429.nic	chr11	+	1165	2	ISM	ENSMUSG00000020453.18	ENSMUST00000136285.2	652	3	285	-534	285	0	3prime_fragment	FALSE	canonical	3	69	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGGCTTTGTGTGTTTT	9166	False	NA	NA	False	GATAAA	-17	NA	3243152	3245429	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_3243344_3244455
transcript_10430.known	chr11	-	3514	16	FSM	ENSMUSG00000020451.18	ENSMUST00000101638.4	3514	16	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_14	50.0611182012104	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGACAGAGAGTGCCAAAG	NA	False	NA	-6	True	AATAAA	-19	NA	3359174	3294255	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_3295885_3296234_3296393_3297051_3297108_3297573_3297749_3298593_3298660_3300391_3300449_3300641_3300774_3302290_3302378_3303276_3303464_3305272_3305470_3305810_3305917_3308109_3308299_3308994_3309105_3310450_3310587_3342916_3343017_3359045
transcript_10432.known	chr11	-	3693	15	FSM	ENSMUSG00000020451.18	ENSMUST00000101642.10	3693	15	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_14	38.572023804931	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGACAGAGAGTGCCAAAG	9814	False	NA	-6	True	AATAAA	-19	NA	3321376	3294255	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_3295885_3296234_3296393_3297051_3297108_3297573_3297749_3298593_3298660_3300391_3300449_3300641_3300774_3302290_3302378_3303276_3303464_3305272_3305470_3305810_3305917_3308109_3308299_3308994_3309105_3310450_3310587_3320968
transcript_10440.nic	chr11	-	2139	5	ISM	ENSMUSG00000020451.18	ENSMUST00000110029.9	2939	12	7429	-2	4105	2	3prime_fragment	FALSE	canonical	3	202	junction_1	18.3354165483089	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACAGAGAGTGCCAAAGTG	NA	False	NA	-4	True	AATAAA	-21	NA	3298712	3294253	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_3295885_3296234_3296393_3297051_3297108_3297573_3297749_3298593
transcript_10441.nic	chr11	-	1180	5	ISM	ENSMUSG00000020451.18	ENSMUST00000110029.9	2939	12	7165	1221	3841	-1221	3prime_fragment	FALSE	canonical	3	202	junction_1	18.3354165483089	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAAGAGTCTGTTACTCG	NA	False	NA	-22	True	GATAAA	-16	NA	3298976	3295476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_3295885_3296234_3296393_3297051_3297108_3297573_3297749_3298593
transcript_10444.nic	chr11	-	1211	5	ISM	ENSMUSG00000020451.18	ENSMUST00000101638.4	3514	16	-16	13323	-1	673	5prime_fragment	FALSE	canonical	3	97	junction_3	84.1616747694579	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGCCCCACTTAAATGTT	NA	False	NA	NA	False	NA	NA	NA	3359190	3307578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_3308299_3308994_3309105_3310450_3310587_3342916_3343017_3359045
transcript_10449.nic	chr11	-	1407	4	ISM	ENSMUSG00000020451.18	ENSMUST00000101640.10	3711	16	-33	13323	-33	673	5prime_fragment	FALSE	canonical	3	120	junction_3	71.1243043316887	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGCCCCACTTAAATGTT	9781	False	NA	NA	False	NA	NA	NA	3321409	3307578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_3308299_3308994_3309105_3310450_3310587_3320968
transcript_1045.known	chr1	-	1508	7	FSM	ENSMUSG00000025939.20	ENSMUST00000182554.9	1508	7	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	188.385243583461	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGGAGTCTGTTCTTAAA	NA	False	NA	NA	False	AATAAA	-17	NA	16689536	16611013	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_16612014_16614172_16614257_16652150_16652227_16655499_16655577_16668174_16668278_16672485_16672578_16689460
transcript_10451.known	chr11	-	400	2	FSM	ENSMUSG00000020451.18	ENSMUST00000145223.2	400	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTATTGAATTTAGCAATC	NA	False	NA	NA	False	AATAAA	-29	NA	3359189	3346778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_3347035_3359045
transcript_10452.known	chr11	-	2906	8	FSM	ENSMUSG00000020448.17	ENSMUST00000064364.3	2906	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	67.856390973278	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGAGTGTGGAGCTTGTG	6815	False	NA	-5	True	ATTAAA	-14	NA	3402363	3365981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_3368088_3369861_3369980_3375281_3375337_3376565_3376679_3378883_3378903_3382399_3382621_3388204_3388324_3402208
transcript_10453.known	chr11	-	2787	7	FSM	ENSMUSG00000020448.17	ENSMUST00000077078.12	2787	7	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_2	17.6391294821737	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGAGTGTGGAGCTTGTG	6815	False	NA	-5	True	ATTAAA	-14	NA	3402363	3365981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_3368088_3369861_3369980_3375281_3375337_3376565_3376679_3378883_3378903_3382399_3382621_3402208
transcript_10456.known	chr11	-	643	6	FSM	ENSMUSG00000020448.17	ENSMUST00000144055.2	643	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	57.6485906159032	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGAGTTGGAACTCAAAAC	6844	False	NA	NA	False	NA	NA	NA	3402334	3367875	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_3368088_3369861_3369980_3375281_3375337_3376565_3376679_3378883_3378903_3402208
transcript_1046.known	chr1	-	423	2	FSM	ENSMUSG00000025939.20	ENSMUST00000132919.2	423	2	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCATTATGGATGGTTGT	NA	False	NA	NA	False	NA	NA	NA	16689508	16672202	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_16672578_16689460
transcript_10461.known	chr11	+	407	2	FSM	ENSMUSG00000034587.9	ENSMUST00000136038.2	407	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAAAATCATCCCCTGAGC	NA	False	NA	NA	False	NA	NA	NA	3402364	3407099	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_3402435_3406762
transcript_10462.known	chr11	+	1675	2	FSM	ENSMUSG00000034587.9	ENSMUST00000146456.2	1675	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATAAGGACTGTAGCTT	NA	False	NA	NA	False	AATAAA	-17	NA	3402471	3408338	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_3402571_3406762
transcript_10463.known	chr11	+	505	2	FSM	ENSMUSG00000034587.9	ENSMUST00000144844.2	505	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCTGCTGTGAGGGCCCT	NA	False	NA	NA	False	NA	NA	NA	3402436	3406963	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_3402741_3406762
transcript_10469.known	chr11	+	707	5	FSM	ENSMUSG00000075702.11	ENSMUST00000094469.6	707	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_4	6.04152298679729	631	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGGAGTCTCTTCTTATTT	NA	False	NA	22	True	ACTAAA	-14	NA	3464866	3467351	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_3465074_3466260_3466297_3466485_3466521_3466841_3466921_3467001
transcript_10470.known	chr11	+	972	4	FSM	ENSMUSG00000075702.11	ENSMUST00000131865.2	972	4	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_3	5.71547606649408	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGAAGCTTCAGAACACGA	NA	False	NA	NA	False	NA	NA	NA	3464701	3467130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_3465074_3466260_3466297_3466485_3466921_3467001
transcript_10472.known	chr11	-	3335	21	FSM	ENSMUSG00000020439.18	ENSMUST00000020721.15	3335	21	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_20	9.90908673894825	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTGACTTTTCTCTGCTG	8137	False	NA	-6	True	GATAAA	-17	NA	3489292	3467522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_3467828_3470751_3470917_3471816_3471969_3472460_3472579_3472774_3472949_3474632_3474727_3474882_3474946_3475041_3475207_3476164_3476241_3476327_3476481_3479439_3479613_3479766_3480283_3480369_3480442_3481044_3481118_3481201_3481523_3482410_3482509_3482597_3482677_3482760_3482855_3483374_3483524_3487322_3487437_3489111
transcript_10473.known	chr11	-	3386	22	FSM	ENSMUSG00000020439.18	ENSMUST00000170588.8	3386	22	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_21	27.3941583060523	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTGACTTTTCTCTGCTG	8137	False	NA	-6	True	GATAAA	-17	NA	3489292	3467522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_3467828_3470751_3470917_3471816_3471969_3472460_3472579_3472774_3472949_3474632_3474727_3474882_3474946_3475041_3475207_3476164_3476241_3476327_3476481_3479439_3479613_3479766_3480283_3480369_3480442_3481044_3481118_3481201_3481523_3482410_3482509_3482597_3482677_3482760_3482855_3483374_3483524_3487322_3487437_3487554_3487606_3489111
transcript_10474.known	chr11	-	2590	3	FSM	ENSMUSG00000020434.5	ENSMUST00000020712.5	2590	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCTGACTTATGTTGCCT	NA	False	NA	NA	False	NA	NA	NA	3845098	3836087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_3838310_3840038_3840148_3844839
transcript_10476.known	chr11	+	4632	2	FSM	ENSMUSG00000047205.13	ENSMUST00000055931.5	4632	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGTCTCATCCTCAAAT	5245	False	NA	NA	False	AATAAA	-17	NA	3845239	3851296	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_3845518_3846942
transcript_10477.known	chr11	-	3059	2	FSM	ENSMUSG00000048807.3	ENSMUST00000051207.2	3059	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCTCTGTCATTCCTTGG	NA	False	NA	NA	False	AATAAA	-16	NA	3864664	3857021	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_3857985_3862568
transcript_10479.nnic	chr11	-	1903	10	NNC	ENSMUSG00000020432.13	novel	1949	10	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_9	43.1225643434566	177	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3882055	3867191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881531_3881975
transcript_10480.nnic	chr11	-	1886	10	NNC	ENSMUSG00000020432.13	novel	1943	10	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_9	46.5015597773709	142	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3882075	3867191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881531_3882012
transcript_10481.known	chr11	-	1945	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109992.8	1945	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	47.4250545858319	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3881789	3867191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881588_3881724
transcript_10482.known	chr11	-	2027	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109993.9	2027	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_9	35.4989132158461	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3882159	3867191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881588_3882012
transcript_10486.known	chr11	-	1949	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109989.10	1949	10	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_9	32.7813557369218	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3882044	3867191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881588_3881975
transcript_10487.known	chr11	-	1914	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109990.8	1914	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	47.7330540029071	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3881960	3867191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881588_3881926
transcript_10488.known	chr11	-	1957	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109988.2	1957	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	47.4250545858319	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3881804	3867191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881585_3881724
transcript_10496.known	chr11	+	2911	15	FSM	ENSMUSG00000020430.13	ENSMUST00000020705.5	2911	15	0	0	0	0	multi-exon	FALSE	canonical	3	864	junction_12	97.3847042006336	1763	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATTGCTGCCCATTATTG	NA	False	NA	NA	False	NA	NA	NA	3913974	3930004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_3914061_3918262_3918343_3919432_3919587_3920624_3920735_3923196_3923369_3923448_3923539_3925528_3925646_3925739_3925815_3926034_3926122_3926287_3926419_3926771_3926898_3927015_3927201_3927625_3927784_3927870_3928033_3928826
transcript_10498.known	chr11	+	2956	12	FSM	ENSMUSG00000019368.14	ENSMUST00000019512.8	2956	12	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_7	3.13603423830188	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAACAAGCTTT	NA	False	NA	NA	False	NA	NA	NA	3981782	3998024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_3981900_3985122_3985199_3989435_3989480_3989770_3989831_3989936_3990126_3991736_3991833_3992190_3992252_3993286_3993371_3993652_3993760_3993832_3993973_3994063_3994234_3996212
transcript_10502.nnic	chr11	+	923	8	NNC	ENSMUSG00000019368.14	novel	3238	11	NA	NA	-13	186	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	6.1145527311522	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTCAATGTTTGCTGCT	NA	False	NA	NA	False	NA	NA	NA	3981769	3992655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_3981900_3985122_3985199_3989435_3989480_3989770_3989831_3989936_3990126_3991736_3991833_3992190_3992252_3992388
transcript_10507.known	chr11	-	1411	4	FSM	ENSMUSG00000004748.6	ENSMUST00000004868.6	1411	4	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_3	5.18544972870135	696	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTTTTCATTTCCTCTT	NA	False	NA	1	True	AATAAA	-17	NA	4045445	4041479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_4042300_4043800_4044034_4044388_4044517_4045215
transcript_10508.known	chr11	-	2631	12	FSM	ENSMUSG00000003585.14	ENSMUST00000003681.8	2631	12	0	0	0	0	multi-exon	TRUE	canonical	3	7	junction_11	8.90816321700644	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCAGAATTCATTGCCCAT	NA	False	NA	0	True	AATAAA	-22	NA	4068831	4047038	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_4048436_4053387_4053558_4053673_4053814_4053894_4054002_4058496_4058581_4058963_4059025_4059148_4059245_4061036_4061226_4061442_4061503_4061893_4061938_4066680_4066757_4068624
transcript_10511.known	chr11	+	1874	9	FSM	ENSMUSG00000003581.15	ENSMUST00000003677.11	1874	9	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_6	6.41165930161608	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATCTGTTAAGACATAA	7850	False	NA	NA	False	AATAAA	-19	NA	4085201	4091172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_4085564_4085813_4085958_4086559_4086632_4086711_4086798_4087211_4087369_4089738_4089859_4089934_4090079_4090297_4090401_4090486
transcript_10513.known	chr11	+	4920	16	FSM	ENSMUSG00000002129.12	ENSMUST00000002198.4	4920	16	0	0	0	0	multi-exon	FALSE	canonical	3	694	junction_11	81.820834075979	237	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCCTCCATTATCCTCATC	NA	False	NA	46	True	TATAAA	-15	NA	4110349	4132541	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_4110551_4111045_4111168_4116495_4116704_4117632_4117891_4121061_4121137_4123079_4123231_4124031_4124220_4125035_4125154_4125394_4125581_4126269_4126392_4126480_4126727_4127412_4127621_4128070_4128226_4129140_4129243_4129353_4129426_4130033
transcript_10519.known	chr11	+	1921	9	FSM	ENSMUSG00000034412.14	ENSMUST00000180088.2	1921	9	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_8	26.2963875846094	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAGCTGTGTATAGTTAG	1582	False	NA	21	True	AATAAA	-12	NA	4136821	4165502	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_4137100_4155756_4155857_4159925_4160034_4162140_4162248_4162784_4162900_4162977_4163044_4163556_4163747_4163836_4163992_4164700
transcript_10522.nnic	chr11	+	1572	10	NNC	ENSMUSG00000020424.4	novel	1574	9	NA	NA	-51	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	42.6686920815557	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGAGTGACAGCTGGCG	7067	False	NA	17	True	AATAAA	-25	NA	4168173	4172409	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_4168427_4168947_4169019_4170107_4170293_4170374_4170508_4170682_4170807_4171145_4171260_4171423_4171507_4171600_4171696_4171842_4172019_4172071
transcript_10523.nnic	chr11	+	1673	10	NNC	ENSMUSG00000020424.4	novel	1574	9	NA	NA	-150	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	42.6686920815557	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGAGTGACAGCTGGCG	6968	False	NA	17	True	AATAAA	-25	NA	4168074	4172409	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_4168427_4168947_4169019_4170107_4170293_4170374_4170508_4170682_4170807_4171145_4171260_4171423_4171507_4171600_4171696_4171842_4172042_4172092
transcript_10532.known	chr11	+	1574	9	FSM	ENSMUSG00000020424.4	ENSMUST00000020699.4	1574	9	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_3	11.4229757506527	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGAGTGACAGCTGGCG	7118	False	NA	17	True	AATAAA	-25	NA	4168224	4172409	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_4168427_4168947_4169019_4170107_4170293_4170374_4170508_4170682_4170807_4171145_4171260_4171423_4171507_4171600_4171696_4171842
transcript_1054.known	chr1	-	742	5	FSM	ENSMUSG00000079658.10	ENSMUST00000185771.7	742	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	1265.55254730888	909	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGAGCTGTAAAGCTAATT	NA	False	NA	52	True	NA	NA	NA	16727138	16713414	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16726519_16726684_16727045
transcript_10544.nnic	chr11	+	1958	3	NNC	ENSMUSG00000058755.4	novel	773	2	NA	NA	1220	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	20	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGTGTCAGTCTTTTAT	768	False	NA	5	True	TTTAAA	-18	NA	4187639	4191026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_4187820_4188405_4188543_4189385
transcript_10545.known	chr11	+	773	2	FSM	ENSMUSG00000058755.4	ENSMUST00000131764.2	773	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACCTGAGCCCACACAGAC	8293	False	NA	NA	False	NA	NA	NA	4186419	4189664	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_4186914_4189385
transcript_10546.known	chr11	+	2272	3	FSM	ENSMUSG00000058755.4	ENSMUST00000075221.3	2272	3	0	0	0	0	multi-exon	TRUE	canonical	3	46	junction_2	1.5	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGTGTCAGTCTTTTAT	8293	False	NA	5	True	TTTAAA	-18	NA	4186419	4191026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_4186914_4188405_4188543_4189385
transcript_10547.known	chr11	+	3798	3	FSM	ENSMUSG00000034394.15	ENSMUST00000040750.4	3798	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTCTGGAGTGCATTGAT	NA	False	NA	NA	False	AATAAA	-18	NA	4217094	4222514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_4217120_4218183_4218366_4218923
transcript_10564.nnic	chr11	-	579	6	NNC	ENSMUSG00000020419.12	novel	583	5	NA	NA	-136	0	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_5	60.0066662963374	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAAATTAAAGACTCATCT	NA	False	NA	NA	False	NA	NA	NA	4391241	4374247	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390876_4390941_4391080
transcript_10567.nic	chr11	-	557	5	NIC	ENSMUSG00000020419.12	novel	583	5	NA	NA	-113	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	77.2572812102523	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAAATTAAAGACTCATCT	NA	False	NA	NA	False	NA	NA	NA	4391218	4374247	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4391015
transcript_10568.nnic	chr11	-	491	5	NNC	ENSMUSG00000020419.12	novel	583	5	NA	NA	-112	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_4	75.5326915977446	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAAATTAAAGACTCATCT	NA	False	NA	NA	False	NA	NA	NA	4391217	4374247	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4391080
transcript_10572.known	chr11	-	583	5	FSM	ENSMUSG00000020419.12	ENSMUST00000130174.2	583	5	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_4	8.69985632065266	576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAAATTAAAGACTCATCT	NA	False	NA	NA	False	NA	NA	NA	4391105	4374247	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390876
transcript_10574.known	chr11	+	2650	20	FSM	ENSMUSG00000020412.17	ENSMUST00000070257.14	2650	20	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_9	44.9846388062843	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTGTGACATGCTCCAG	NA	False	NA	8	True	AATAAA	-20	NA	4587746	4633385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_4587823_4590382_4590481_4596561_4596721_4597062_4597234_4599739_4599870_4606268_4606337_4608214_4608326_4609271_4609385_4614228_4614304_4618314_4618423_4618579_4618649_4618861_4618937_4620275_4620463_4622282_4622498_4623327_4623448_4629251_4629346_4629430_4629553_4630082_4630183_4631438_4631519_4632906
transcript_10578.nnic	chr11	+	1013	7	NNC	ENSMUSG00000020412.17	novel	4844	19	NA	NA	-68	-25632	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_6	120.00370364655	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGAAGGTGTTTCTCAGCCT	NA	False	NA	NA	False	NA	NA	NA	4587678	4607753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_4587823_4590382_4590481_4596561_4596721_4597062_4597234_4599739_4599870_4606268_4606337_4607510
transcript_10581.nnic	chr11	+	683	6	NNC	ENSMUSG00000020412.17	novel	4844	19	NA	NA	-68	-30828	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	136.699670811601	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATCTTGCTGACTGTCTT	NA	False	NA	NA	False	NA	NA	NA	4587678	4602557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_4587823_4590382_4590481_4596561_4596721_4597062_4597234_4599739_4599778_4602484
transcript_10582.nnic	chr11	+	692	6	NNC	ENSMUSG00000020412.17	novel	4844	19	NA	NA	-68	-30828	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	136.699670811601	55	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATCTTGCTGACTGTCTT	NA	False	NA	NA	False	NA	NA	NA	4587678	4602557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_4587823_4590382_4590481_4596561_4596721_4597062_4597234_4599739_4599787_4602484
transcript_10584.nnic	chr11	+	712	6	NNC	ENSMUSG00000020412.17	novel	4844	19	NA	NA	-68	-30842	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	136.699670811601	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTCCTGCTGAGCCATC	NA	False	NA	NA	False	NA	NA	NA	4587678	4602543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_4587823_4590382_4590481_4596561_4596721_4597062_4597234_4599739_4599821_4602484
transcript_10588.nnic	chr11	+	817	6	NNC	ENSMUSG00000020412.17	novel	4844	19	NA	NA	-68	-31962	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_5	127.679912280672	123	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGTAGATATTTATGAATT	NA	False	NA	NA	False	AATAAA	-27	NA	4587678	4601423	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_4587823_4590382_4590481_4596561_4596721_4597062_4597234_4599739_4599870_4601308
transcript_10596.nnic	chr11	+	717	5	NNC	ENSMUSG00000020412.17	novel	4844	19	NA	NA	-66	-31962	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	143.630385016542	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGTAGATATTTATGAATT	NA	False	NA	NA	False	AATAAA	-27	NA	4587680	4601423	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_4587823_4596561_4596721_4597062_4597234_4599739_4599870_4601308
transcript_10597.nnic	chr11	-	600	2	Antisense	novelGene_ENSMUSG00000020412.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGTCTACTTCTGATTTT	NA	False	NA	NA	False	AAGAAA	-17	NA	4644794	4635420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr11_-_4635880_4644653
transcript_10607.known	chr11	-	434	2	FSM	ENSMUSG00000059534.9	ENSMUST00000058407.6	434	2	0	0	0	0	multi-exon	FALSE	canonical	3	8152	junction_1	0	38611	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGCTTTTGCACGAGTCCT	NA	False	NA	-6	True	AATAAA	-19	NA	4654342	4651972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_4652221_4654156
transcript_10608.known	chr11	-	510	3	FSM	ENSMUSG00000059534.9	ENSMUST00000151559.2	510	3	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_1	31	3776	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCGGCTTTTGCACGAGTC	NA	False	NA	-8	True	AATAAA	-17	NA	4654334	4651974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_4652221_4653903_4653990_4654156
transcript_10609.known	chr11	-	389	2	FSM	ENSMUSG00000059534.9	ENSMUST00000130236.2	389	2	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_1	0	1089	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGAGACCGGCTTTTGC	NA	False	NA	-15	True	AATAAA	-10	NA	4654053	4651981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_4652221_4653903
transcript_1061.known	chr1	-	534	4	FSM	ENSMUSG00000079658.10	ENSMUST00000186701.2	534	4	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_3	1176.35397167123	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTGAGAATGAAACCAACG	NA	False	NA	NA	False	TATAAA	-25	NA	16726849	16713695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16726519
transcript_10619.known	chr11	+	599	6	FSM	ENSMUSG00000009076.11	ENSMUST00000154341.8	599	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	283.910549293259	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCCTCCCTGCGGGCACC	NA	False	NA	NA	False	NA	NA	NA	4654707	4687395	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_4654722_4672357_4672512_4678584_4678648_4680186_4680268_4681955_4682179_4687331
transcript_10621.known	chr11	+	792	6	FSM	ENSMUSG00000009076.11	ENSMUST00000009220.5	792	6	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_1	205.698225563567	3003	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGGCCTGTCTCTCTTG	NA	False	NA	13	True	TATAAA	-16	NA	4654677	4687669	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_4654722_4672357_4672512_4678584_4678648_4680186_4680268_4682066_4682179_4687331
transcript_1064.known	chr1	-	2014	4	FSM	ENSMUSG00000079658.10	ENSMUST00000188641.7	2014	4	0	0	0	0	multi-exon	FALSE	canonical	3	1161	junction_3	673.864641864785	5130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATCAGCACTTGGTCTTTA	NA	False	NA	0	True	AATAAA	-23	NA	16727108	16711948	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727045
transcript_10643.known	chr11	-	2394	17	FSM	ENSMUSG00000009073.17	ENSMUST00000056290.13	2394	17	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_1	34.4219565648148	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTGGGGGGGGAAAAAAAAA	9396	False	NA	-6	True	NA	NA	NA	4798985	4717664	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_4718274_4730577_4730623_4732186_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504_4768628_4770367_4770494_4798871
transcript_10644.known	chr11	-	2470	17	FSM	ENSMUSG00000009073.17	ENSMUST00000053079.13	2470	17	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	88.5606915835124	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTTTTCCCATTTTTGT	9016	False	NA	NA	False	NA	NA	NA	4799365	4722333	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_4722639_4730577_4730623_4732186_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504_4768628_4770367_4770494_4798871
transcript_10648.nic	chr11	-	2474	15	ISM	ENSMUSG00000009073.17	ENSMUST00000053079.13	2470	17	-104	9603	67	0	5prime_fragment	FALSE	canonical	3	334	junction_11	18.239338512889	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGGACTTATGCCCAAGG	8912	False	NA	NA	False	AATAAA	-21	NA	4799469	4731936	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504_4768628_4770367_4770494_4798871
transcript_10649.known	chr11	-	4720	16	FSM	ENSMUSG00000009073.17	ENSMUST00000109910.9	4720	16	0	0	0	0	multi-exon	TRUE	canonical	3	105	junction_1	67.5504749551524	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGTCGAGTTTTTTTTTT	8845	False	NA	-8	True	AATAAA	-21	NA	4799536	4715844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_4718274_4732186_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504_4768628_4770367_4770494_4798871
transcript_10655.nnic	chr11	-	2152	11	NNC	ENSMUSG00000009073.17	novel	4720	16	NA	NA	67	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	111.144050672989	228	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGTCTTTCGTCGAGTTT	8912	False	NA	-15	True	AATAAA	-14	NA	4799469	4715851	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_4716521_4744411_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504_4768628_4770367_4770494_4798871
transcript_1066.known	chr1	-	641	4	FSM	ENSMUSG00000079658.10	ENSMUST00000186948.7	641	4	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_3	1146.38165062465	1541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGAGTTGAAATTTGTTT	NA	False	NA	-82	True	NA	NA	NA	16727242	16713365	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727135
transcript_10669.known	chr11	+	1926	10	FSM	ENSMUSG00000034285.16	ENSMUST00000038570.9	1926	10	0	0	0	0	multi-exon	FALSE	canonical	3	1103	junction_6	68.3294488507475	3179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTTGTGGTGTTGTCTTCA	NA	False	NA	11	True	ATTAAA	-11	NA	4823950	4844200	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_4824104_4833367_4833496_4833725_4833772_4834021_4834117_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
transcript_10670.known	chr11	+	1566	11	FSM	ENSMUSG00000034285.16	ENSMUST00000136552.8	1566	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	513.053808094239	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAATAAATAAAAAT	NA	False	NA	NA	False	AAAAAG	-16	NA	4823998	4843617	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_4824104_4832900_4833172_4833367_4833496_4833725_4833772_4834021_4834117_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
transcript_10671.known	chr11	+	435	6	FSM	ENSMUSG00000034285.16	ENSMUST00000139737.2	435	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	511.248511000277	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCTGTCCAGGAGAAACC	NA	False	NA	NA	False	NA	NA	NA	4833193	4839131	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_4833254_4833367_4833496_4833725_4833772_4834021_4834117_4838879_4838951_4839096
transcript_10676.known	chr11	+	2235	20	FSM	ENSMUSG00000034274.12	ENSMUST00000038237.8	2235	20	0	0	0	0	multi-exon	TRUE	canonical	3	228	junction_1	27.0805712775824	498	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTGTTTGTAGCTCCTT	NA	False	NA	21	True	ATTAAA	-18	NA	4845342	4878865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_4845379_4849790_4849907_4851151_4851296_4852085_4852200_4852334_4852433_4854094_4854242_4855640_4855756_4860626_4860760_4862780_4862859_4864269_4864311_4864521_4864622_4865488_4865598_4868123_4868226_4869732_4869830_4870376_4870492_4871921_4872026_4872138_4872227_4874747_4874864_4876045_4876237_4878674
transcript_10689.known	chr11	-	3994	4	FSM	ENSMUSG00000020396.9	ENSMUST00000093369.5	3994	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	3.09120616516523	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGTTGTTTTTACTTGT	NA	False	NA	NA	False	AATAAA	-23	NA	4898064	4888753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_4891416_4893850_4893976_4895110_4895311_4897057
transcript_10690.known	chr11	+	4085	21	FSM	ENSMUSG00000009090.18	ENSMUST00000009234.16	4085	21	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_7	27.5174490096738	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTCTGGCTATGGTCCC	NA	False	NA	NA	False	NA	NA	NA	4936823	4992791	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_4937052_4959529_4959593_4962881_4962988_4965605_4965742_4966605_4966852_4968015_4968207_4969280_4969503_4973096_4973218_4974371_4974468_4975593_4975710_4976244_4976411_4980961_4981061_4981629_4981890_4982417_4982620_4983686_4983843_4987631_4987778_4989124_4989255_4989518_4989604_4990093_4990181_4990266_4990422_4991717
transcript_10691.nnic	chr11	+	974	2	NNC	ENSMUSG00000009090.18	novel	3942	21	NA	NA	2054	-150	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGCACATTTCTTCCCTC	3860	False	NA	20	True	AATAAA	-20	NA	4990817	4992579	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_4990930_4991717
transcript_10693.known	chr11	+	1110	3	FSM	ENSMUSG00000034209.5	ENSMUST00000037218.2	1110	3	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	0.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTAAGGGTTTCTTGTTC	NA	False	NA	NA	False	AATAAA	-27	NA	5008127	5010385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_5008525_5009432_5009558_5009797
transcript_10694.nic	chr11	+	1472	2	ISM	ENSMUSG00000034209.5	ENSMUST00000037218.2	1110	3	-127	5	-127	-5	intron_retention	FALSE	canonical	3	10	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACAATTTAAGGGTTTCT	NA	False	NA	NA	False	AATAAA	-22	NA	5008000	5010380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_5008525_5009432
transcript_10698.known	chr11	+	1790	9	FSM	ENSMUSG00000034175.14	ENSMUST00000036320.12	1790	9	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_6	83.1500901983876	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGGTCTCCTGAGTGTC	NA	False	NA	16	True	AATAAA	-17	NA	5049438	5056091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_5049567_5049747_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055180_5055314_5055432_5055718_5055799
transcript_10699.known	chr11	+	2333	9	FSM	ENSMUSG00000034175.14	ENSMUST00000101610.10	2333	9	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	51.4605431374369	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGGTCTCCTGAGTGTC	9767	False	NA	16	True	AATAAA	-17	NA	5048925	5056091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_5049567_5049747_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
transcript_10713.known	chr11	+	1611	8	FSM	ENSMUSG00000034175.14	ENSMUST00000109878.9	1611	8	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	73.7707424998528	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGGTCTCCTGAGTGTC	NA	False	NA	16	True	AATAAA	-17	NA	5050156	5056091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_5050227_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
transcript_10724.known	chr11	-	2588	17	FSM	ENSMUSG00000009079.17	ENSMUST00000079949.13	2588	17	0	0	0	0	multi-exon	FALSE	canonical	3	2776	junction_9	796.06296616144	6295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCTCCTCCTCTGTTCTC	NA	False	NA	-13	True	AATAAA	-23	NA	5049266	5019688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919_5028953_5029484_5029520_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
transcript_10725.known	chr11	-	2269	15	FSM	ENSMUSG00000009079.17	ENSMUST00000073308.11	2269	15	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_7	1383.04088950429	3049	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACTGTCATCCTCCTCC	NA	False	NA	-22	True	AATAAA	-14	NA	5049067	5019697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028580_5032283_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
transcript_10726.known	chr11	-	2174	18	FSM	ENSMUSG00000009079.17	ENSMUST00000102930.10	2174	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	1623.90424701095	3899	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGCTGAGTTTTTTTTTG	NA	False	NA	NA	False	ATTAAA	-16	NA	5049042	5019896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919_5028953_5029484_5029520_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041459_5041478_5041858_5041983_5043680_5043733_5043868_5043906_5049008
transcript_10727.known	chr11	-	1290	9	FSM	ENSMUSG00000009079.17	ENSMUST00000093365.12	1290	9	0	0	0	0	multi-exon	FALSE	canonical	2	21	junction_1	1813.8341296822	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGAGAGAGCATTTTATG	NA	False	NA	-5	True	ATTAAA	-21	NA	5049066	5030417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_5030689_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
transcript_10728.known	chr11	+	1707	7	FSM	ENSMUSG00000034175.14	ENSMUST00000129016.3	1707	7	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_4	70.035110242411	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTCTCCTGAGTGTCAG	NA	False	NA	18	True	AATAAA	-19	NA	5050236	5056093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055180_5055348_5055432_5055718_5055799
transcript_10729.known	chr11	-	1923	15	FSM	ENSMUSG00000034164.18	ENSMUST00000163299.8	1923	15	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_13	6.0995148686312	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCGCTTGGTCTCTATGT	7879	False	NA	NA	False	AATAAA	-18	NA	5102240	5056265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_5056970_5060689_5060775_5066879_5066925_5078869_5078915_5079008_5079072_5079427_5079481_5079621_5079721_5080631_5080779_5081481_5081572_5081919_5082041_5084348_5084411_5085353_5085432_5093826_5093925_5094294_5094409_5102121
transcript_1073.known	chr1	-	960	4	FSM	ENSMUSG00000079658.10	ENSMUST00000115352.10	960	4	0	0	0	0	multi-exon	TRUE	canonical	3	1066	junction_3	717.825574603995	5500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTGTGTTTTGTTTATT	NA	False	NA	-2	True	TATAAA	-20	NA	16727266	16712990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727215
transcript_10734.known	chr11	+	2129	5	FSM	ENSMUSG00000020484.20	ENSMUST00000063084.16	2129	5	0	0	0	0	multi-exon	FALSE	canonical	3	876	junction_4	35.2801289680182	531	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGTTCTGTGATTTCTA	NA	False	NA	34	True	ATTAAA	-17	NA	5470658	5475893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_5471201_5471922_5472020_5473332_5473468_5474238_5474385_5474684
transcript_1074.known	chr1	-	366	3	FSM	ENSMUSG00000079658.10	ENSMUST00000185393.7	366	3	0	0	0	0	multi-exon	FALSE	canonical	3	2400	junction_2	162.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACCTGAAATTGCACTGGA	NA	False	NA	-99	True	NA	NA	NA	16718263	16713565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_16713703_16715909_16716054_16718178
transcript_10741.known	chr11	+	1696	7	FSM	ENSMUSG00000020481.16	ENSMUST00000137933.2	1696	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.372677996249965	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAGATTTTGGAAACAG	4576	False	NA	NA	False	AATATA	-9	NA	5578737	5595153	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_5579407_5580701_5580796_5582135_5582210_5585027_5585388_5589099_5589186_5593679_5593851_5594911
transcript_10743.known	chr11	+	1840	7	FSM	ENSMUSG00000083844.9	ENSMUST00000142942.8	1840	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	34.0216434379973	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATTGACATTTAAGTTTC	NA	False	NA	NA	False	AATAAA	-23	NA	5712149	5734710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_5712241_5715508_5715572_5718885_5719073_5719166_5719244_5730205_5730636_5732184_5732358_5733891
transcript_10744.known	chr11	-	5089	6	FSM	ENSMUSG00000049680.18	ENSMUST00000093362.12	5089	6	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_5	4.96386945839634	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATACATGCAGAAAGTTTGT	8847	False	NA	NA	False	AATAAA	-26	NA	5691150	5663416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_5668264_5672801_5672841_5673110_5673162_5676347_5676419_5676830_5676858_5691096
transcript_10771.nnic	chr11	-	675	4	NNC	ENSMUSG00000020477.11	novel	995	4	NA	NA	-41	0	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_3	1216.61890317205	269	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTCTGGGTCTCTCTCTC	NA	False	NA	-25	True	AATAAA	-18	NA	5657731	5654325	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_5654733_5657297_5657410_5657486_5657556_5657644
transcript_10772.known	chr11	+	1846	3	FSM	ENSMUSG00000083844.9	ENSMUST00000137510.8	1846	3	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_2	16.5	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTGTTGTTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	5712128	5731876	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_5712241_5715508_5715572_5730205
transcript_1078.known	chr1	+	1710	3	FSM	ENSMUSG00000025940.7	ENSMUST00000065373.6	1710	3	0	0	0	0	multi-exon	FALSE	canonical	3	512	junction_1	10.5	934	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGTGTTTTGTTTGCCTC	NA	False	NA	22	True	ATTAAA	-12	NA	16735433	16748499	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_16735730_16737891_16737998_16747191
transcript_10782.known	chr11	-	700	3	FSM	ENSMUSG00000020477.11	ENSMUST00000020770.11	700	3	0	0	0	0	multi-exon	FALSE	canonical	3	2385	junction_2	231.5	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTCTGGGTCTCTCTCTC	NA	False	NA	-25	True	AATAAA	-18	NA	5657667	5654325	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_5654733_5657297_5657410_5657486
transcript_10784.known	chr11	+	2295	13	FSM	ENSMUSG00000020476.15	ENSMUST00000102928.5	2295	13	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_7	84.6740072277201	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATATAACTGATGTCAG	NA	False	NA	-2	True	NA	NA	NA	5738529	5750962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_5738643_5741791_5741848_5743649_5743763_5744236_5744312_5745447_5745595_5746745_5746824_5747023_5747176_5747283_5747336_5747626_5747721_5748015_5748112_5748215_5748326_5749233_5749340_5749859
transcript_10795.known	chr11	-	840	3	FSM	ENSMUSG00000020475.4	ENSMUST00000020768.4	840	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	6	177	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCACGTTTCATATAGCT	8648	False	NA	NA	False	AATAAA	-15	NA	5753733	5751639	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_5751840_5752998_5753180_5753274
transcript_10796.known	chr11	-	2924	11	FSM	ENSMUSG00000020474.12	ENSMUST00000020767.4	2924	11	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_5	4.04969134626332	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATAGTTTTACAAGTTTT	380	False	NA	NA	False	AATAAA	-18	NA	5788016	5777860	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_5779116_5779310_5779395_5779476_5779726_5779825_5779929_5780067_5780201_5781659_5781781_5784741_5784814_5785415_5785587_5785700_5785800_5786193_5786375_5787560
transcript_10803.known	chr11	-	1646	11	FSM	ENSMUSG00000020471.12	ENSMUST00000102922.10	1646	11	0	0	0	0	multi-exon	FALSE	canonical	3	869	junction_10	541.870242770352	3598	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGTTCACTTGGGCATGT	9505	False	NA	2	True	AATAAA	-25	NA	5828292	5822179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_5822419_5822669_5822772_5823026_5823155_5823408_5823567_5823688_5823770_5824023_5824223_5824314_5824430_5824760_5824885_5825053_5825176_5826712_5826990_5828191
transcript_10804.known	chr11	-	498	3	FSM	ENSMUSG00000020471.12	ENSMUST00000141907.2	498	3	0	0	0	0	multi-exon	FALSE	canonical	3	2338	junction_1	292.5	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGAACCTTGTTCACTT	NA	False	NA	-6	True	AATAAA	-17	NA	5823191	5822187	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_5822419_5822669_5822772_5823026
transcript_10806.known	chr11	-	590	7	FSM	ENSMUSG00000020469.9	ENSMUST00000102921.4	590	7	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_6	30.6671195618731	282	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTGTTGGCTTGACTG	NA	False	NA	2	True	AATAAA	-20	NA	5848782	5846636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_5846782_5847125_5847175_5847319_5847399_5847831_5847937_5848159_5848236_5848425_5848540_5848760
transcript_10809.known	chr11	-	2727	10	FSM	ENSMUSG00000041798.16	ENSMUST00000102920.4	2727	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.4142135623731	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATGGCCTGCTGATTGT	NA	False	NA	NA	False	ATTAAA	-16	NA	5900081	5850822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_5851815_5852084_5852319_5853099_5853256_5854360_5854545_5856476_5856577_5856682_5856779_5859082_5859203_5860277_5860433_5860861_5861025_5899554
transcript_10812.known	chr11	-	394	2	FSM	ENSMUSG00000041798.16	ENSMUST00000125434.2	394	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGGGAGAGGCCCCTG	NA	False	NA	NA	False	NA	NA	NA	5852087	5851568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_5851815_5851939
transcript_10813.known	chr11	+	2541	7	FSM	ENSMUSG00000002741.10	ENSMUST00000002818.9	2541	7	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_4	17.3205080756888	714	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGTCTTGTGTTTACTTT	NA	False	NA	19	True	GATAAA	-20	NA	5905692	5917780	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_5906005_5909296_5909380_5911187_5911289_5912336_5912442_5912692_5912759_5914560_5914663_5916008
transcript_10818.known	chr11	-	1973	21	FSM	ENSMUSG00000057897.15	ENSMUST00000093355.12	1973	21	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	41.4625131896271	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGATGACAACGACAACCA	3040	False	NA	-144	True	TTTAAA	-6	NA	6015582	5921668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_5921827_5922216_5922451_5922631_5922727_5922812_5922889_5926764_5926894_5927811_5927941_5929672_5929722_5932500_5932573_5932720_5932762_5938100_5938144_5938954_5939039_5939331_5939455_5939573_5939669_5940162_5940247_5940319_5940423_5942819_5942893_5947882_5947949_5951337_5951393_5965449_5965510_5978866_5978962_6015473
transcript_10824.known	chr11	-	393	1	FSM	ENSMUSG00000083022.2	ENSMUST00000117476.2	393	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	40442	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATGTAAAGCATAAATAAAAA	NA	False	NA	-51	True	AAAACA	-35	NA	6123036	6122643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_6122600_6123000
transcript_10825.known	chr11	-	3927	6	FSM	ENSMUSG00000053838.15	ENSMUST00000066496.10	3927	6	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_5	15.4090882274066	269	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTTTGTTTATCTGGCTTA	9458	False	NA	NA	False	NA	NA	NA	6150415	6055690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_6058356_6063242_6063432_6075417_6075562_6100494_6100628_6143153_6143477_6149942
transcript_10826.known	chr11	-	1956	14	FSM	ENSMUSG00000004393.11	ENSMUST00000004507.11	1956	14	0	0	0	0	multi-exon	FALSE	canonical	3	937	junction_7	74.9654752883426	1289	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGGTGTTGTCTGGCTCTG	4489	False	NA	-2	True	NA	NA	NA	6217772	6208918	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_6209259_6209546_6209621_6211615_6211722_6212456_6212547_6212662_6212737_6213938_6214034_6214123_6214238_6214675_6214796_6215511_6215757_6216315_6216407_6216511_6216683_6216810_6216972_6217417_6217580_6217659
transcript_1083.known	chr1	+	632	5	FSM	ENSMUSG00000025779.11	ENSMUST00000026881.11	632	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	0.707106781186548	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTTCTGTTTTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	16758656	16779835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_16758844_16761907_16761998_16771018_16771148_16776396_16776450_16779662
transcript_10831.known	chr11	-	2003	5	FSM	ENSMUSG00000004394.13	ENSMUST00000004508.13	2003	5	0	0	0	0	multi-exon	FALSE	canonical	3	418	junction_4	49.7663289785373	865	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAATTCTCCCTTTGTTTT	5338	False	NA	NA	False	ATTAAA	-24	NA	6224870	6220368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_6221801_6223740_6223888_6224107_6224234_6224397_6224499_6224673
transcript_10833.known	chr11	+	4127	23	FSM	ENSMUSG00000020456.18	ENSMUST00000003461.15	4127	23	0	0	0	0	multi-exon	FALSE	canonical	3	535	junction_8	60.360778272973	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGCCTGCTGTCGTGTGT	NA	False	NA	14	True	CATAAA	-18	NA	6241632	6306642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_6241694_6246951_6247200_6263787_6263980_6266977_6267081_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
transcript_10840.known	chr11	+	779	2	FSM	ENSMUSG00000020456.18	ENSMUST00000125929.2	779	2	0	0	0	0	multi-exon	FALSE	canonical	3	605	junction_1	0	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTTGTGTTTCTATTTTT	NA	False	NA	NA	False	TATAAA	-12	NA	6241640	6247677	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_6241694_6246951
transcript_10848.known	chr11	+	746	5	FSM	ENSMUSG00000071866.13	ENSMUST00000090749.13	746	5	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_1	16065.018555467	84461	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCCTTGTTTGTATTGG	NA	False	NA	0	True	AATAAA	-17	NA	6365869	6369815	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_6365985_6368100_6368132_6368225_6368315_6369112_6369286_6369477
transcript_1085.known	chr1	-	4809	5	FSM	ENSMUSG00000042686.6	ENSMUST00000038382.5	4809	5	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	2.12132034355964	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGAAGTGTCTTTCCTTTG	NA	False	NA	NA	False	AATAAA	-21	NA	17168113	17065161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_17067784_17074114_17074759_17086262_17086382_17161521_17162282_17167449
transcript_10857.known	chr11	-	1633	5	FSM	ENSMUSG00000041126.17	ENSMUST00000109737.9	1633	5	0	0	0	0	multi-exon	FALSE	canonical	3	3133	junction_4	74.0485482639599	5137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGTCCTGGTCCTGA	NA	False	NA	-5	True	AATAAA	-24	NA	6394443	6377228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_6378433_6379095_6379226_6383723_6383838_6389375_6389454_6394336
transcript_10858.known	chr11	-	519	4	FSM	ENSMUSG00000041126.17	ENSMUST00000093346.6	519	4	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_2	1363.86957669061	1762	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTGTGTCTCAGTATTTC	NA	False	NA	-3	True	GATAAA	-16	NA	6394352	6378137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_6378433_6379095_6379226_6389375_6389454_6394336
transcript_10859.known	chr11	-	3307	22	FSM	ENSMUSG00000020437.13	ENSMUST00000003459.4	3307	22	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_15	5.11677690501468	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGCTGCCACTGCTTTG	5089	False	NA	0	True	AATAAA	-20	NA	6470958	6456547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_6456833_6456906_6457062_6457868_6457983_6458189_6458295_6459324_6459470_6460147_6460372_6460867_6461076_6461482_6461650_6462160_6462294_6462462_6462538_6464466_6464538_6464751_6464923_6465093_6465209_6465848_6465995_6466078_6466304_6466747_6466865_6467086_6467198_6467569_6467624_6467851_6468018_6468733_6468828_6468978_6469188_6470741
transcript_10872.known	chr11	-	611	4	FSM	ENSMUSG00000085156.9	ENSMUST00000147762.9	611	4	0	0	0	0	multi-exon	FALSE	canonical	3	436	junction_3	5.24933858267454	3546	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTGATCGGGTTTGA	NA	False	NA	-1	True	NA	NA	NA	6478779	6475590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_6475818_6476354_6476438_6478305_6478375_6478547
transcript_10873.known	chr11	-	771	3	FSM	ENSMUSG00000085156.9	ENSMUST00000124818.3	771	3	0	0	0	0	multi-exon	FALSE	canonical	3	446	junction_1	1	523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTGATCGGGTTTGA	NA	False	NA	-1	True	NA	NA	NA	6478766	6475590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_6475818_6476354_6476438_6478305
transcript_10874.nic	chr11	+	1661	9	NIC	ENSMUSG00000000378.16	novel	1858	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	133.856266196245	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCAGTTGTCAAGCATTT	NA	False	NA	15	True	AAAACA	-27	NA	6496909	6546744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_6497030_6534519_6534604_6535033_6535218_6539431_6539569_6540752_6540889_6543066_6543125_6543601_6543741_6544147_6544287_6546080
transcript_10875.known	chr11	+	1858	10	FSM	ENSMUSG00000000378.16	ENSMUST00000000388.15	1858	10	0	0	0	0	multi-exon	TRUE	canonical	3	315	junction_9	41.5204843093617	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCAGTTGTCAAGCATTT	NA	False	NA	15	True	AAAACA	-27	NA	6496886	6546744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_6497030_6519963_6520138_6534519_6534604_6535033_6535218_6539431_6539569_6540752_6540889_6543066_6543125_6543601_6543741_6544147_6544287_6546080
transcript_10876.known	chr11	-	4892	8	FSM	ENSMUSG00000041073.11	ENSMUST00000045713.4	4892	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	1.8405855323893	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCTGGAGTCCCCTCAGT	4958	False	NA	NA	False	AATAAA	-18	NA	6556053	6547822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_6547910_6548004_6548128_6548268_6548413_6548499_6548647_6548880_6548953_6549035_6549236_6549375_6552919_6555477
transcript_10877.known	chr11	-	1212	7	FSM	ENSMUSG00000041073.11	ENSMUST00000177391.2	1212	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.88561808316413	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGTAGCTGCTGACTGGA	9595	False	NA	NA	False	NA	NA	NA	6549938	6547902	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_6547910_6548004_6548128_6548268_6548413_6548499_6548647_6548880_6548953_6549079_6549236_6549375
transcript_10880.known	chr11	-	2347	13	FSM	ENSMUSG00000000384.16	ENSMUST00000189268.7	2347	13	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	134.990406037697	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGGGCCACTGGCTTTTC	NA	False	NA	-6	True	AATAAA	-18	NA	6576067	6565598	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_6565767_6566557_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575964
transcript_10892.known	chr11	-	2290	12	FSM	ENSMUSG00000000384.16	ENSMUST00000000394.14	2290	12	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_8	40.423788103394	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCTATCTTCCCAGGCT	NA	False	NA	-27	True	AATAAA	-19	NA	6576043	6566422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575964
transcript_1091.known	chr1	-	3031	17	FSM	ENSMUSG00000041859.11	ENSMUST00000053266.11	3031	17	0	0	0	0	multi-exon	FALSE	canonical	3	2257	junction_11	181.480370839383	853	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTGTGTGTATGTGTG	NA	False	NA	-12	True	AATACA	-9	NA	20890536	20873191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
transcript_10916.known	chr11	-	853	4	FSM	ENSMUSG00000000384.16	ENSMUST00000131815.8	853	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	235.927013195936	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATGAGATAAGGCCTATTT	NA	False	NA	-12	True	AATAAA	-6	NA	6576022	6573199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_6573462_6573815_6574284_6575148_6575214_6575964
transcript_10920.known	chr11	-	2241	12	FSM	ENSMUSG00000000384.16	ENSMUST00000150697.8	2241	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	158.94096830257	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCAGCTATCTTCCCAGG	NA	False	NA	-29	True	AATAAA	-17	NA	6576043	6566424	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569064_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575964
transcript_10921.known	chr11	+	1233	3	FSM	ENSMUSG00000041046.8	ENSMUST00000045374.8	1233	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	3.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGTATTTCTCATTTTAT	NA	False	NA	14	True	ATTAAA	-14	NA	6608520	6627475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_6608628_6624762_6624896_6626482
transcript_10922.nic	chr11	+	1181	2	ISM	ENSMUSG00000041046.8	ENSMUST00000139540.2	1333	4	16143	-3	16143	0	3prime_fragment	FALSE	canonical	3	12	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGTATTTCTCATTTTAT	NA	False	NA	14	True	ATTAAA	-14	NA	6624707	6627475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_6624896_6626482
transcript_10923.known	chr11	+	1333	4	FSM	ENSMUSG00000041046.8	ENSMUST00000139540.2	1333	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.65685424949238	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACGTGGTATTTCTCATTT	NA	False	NA	11	True	ATTAAA	-11	NA	6608564	6627472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_6608628_6614200_6614348_6624762_6624896_6626482
transcript_10924.known	chr11	-	1007	4	FSM	ENSMUSG00000087512.3	ENSMUST00000122910.3	1007	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.4142135623731	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCCAACGTTTATGCCTG	NA	False	NA	NA	False	AATAAA	-18	NA	7138569	7133152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_7133462_7134628_7134842_7136092_7136519_7138510
transcript_10926.known	chr11	-	2421	5	FSM	ENSMUSG00000020427.12	ENSMUST00000020702.11	2421	5	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_4	11.7340317027013	201	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTTTTGTCTGTTTCTGG	NA	False	NA	NA	False	AATAAA	-23	NA	7163897	7156085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_7157507_7158368_7158509_7159458_7159579_7160018_7160246_7163384
transcript_10930.known	chr11	-	4640	8	FSM	ENSMUSG00000020413.12	ENSMUST00000020683.10	4640	8	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_5	37.6557988054094	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGAATTCATTTATTAAT	NA	False	NA	92	True	AATAAA	-21	NA	8961191	8943136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_8946933_8948636_8948757_8950076_8950177_8955988_8956064_8957493_8957605_8960240_8960418_8960496_8960625_8961058
transcript_10933.known	chr11	-	2114	7	FSM	ENSMUSG00000020413.12	ENSMUST00000139877.8	2114	7	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_4	35.6436841841892	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAGAAACCACAAGGAGAC	NA	False	NA	NA	False	NA	NA	NA	8961164	8947339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_8948757_8950076_8950177_8955988_8956064_8957493_8957605_8960240_8960418_8960496_8960625_8961058
transcript_10938.nic	chr11	-	767	6	ISM	ENSMUSG00000020413.12	ENSMUST00000139877.8	2114	7	-1	2668	-1	-1269	5prime_fragment	FALSE	canonical	3	104	junction_3	31.5936702521249	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATTGAAGCTTGATTTTC	NA	False	NA	NA	False	AATAAA	-32	NA	8961165	8950007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_8950177_8955988_8956064_8957493_8957605_8960240_8960418_8960496_8960625_8961058
transcript_10940.nnic	chr11	-	1832	5	NIC	ENSMUSG00000020413.12	novel	2114	7	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_4	82.1990723791942	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAGAAACCACAAGGAGAC	NA	False	NA	NA	False	NA	NA	NA	8961187	8947339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_8948757_8950076_8950177_8955988_8956064_8957493_8957605_8961058
transcript_10942.known	chr11	-	2792	7	FSM	ENSMUSG00000020413.12	ENSMUST00000152890.8	2792	7	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_5	37.7079419869195	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAAATAAATCAAAATC	NA	False	NA	NA	False	ATTAAA	-44	NA	8961128	8945355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_8946933_8948636_8948757_8950076_8950177_8955988_8956064_8957493_8957605_8960240_8960418_8960496
transcript_10943.known	chr11	-	433	4	FSM	ENSMUSG00000020413.12	ENSMUST00000127578.2	433	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	65.9309403003544	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTATTACTCCTTCAG	NA	False	NA	NA	False	NA	NA	NA	8961128	8955988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_8956064_8957493_8957605_8960240_8960418_8961058
transcript_10944.known	chr11	+	2400	7	FSM	ENSMUSG00000040978.5	ENSMUST00000043285.5	2400	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.25830573921179	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCAGCTGCCTCTCTTCCTT	NA	False	NA	NA	False	AATAAA	-19	NA	8998593	9019356	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_8999201_9002693_9002880_9004209_9004319_9006421_9006579_9009910_9010009_9011165_9011387_9018334
transcript_1095.known	chr1	-	3431	16	FSM	ENSMUSG00000041859.11	ENSMUST00000185296.2	3431	16	0	0	0	0	multi-exon	FALSE	canonical	3	2257	junction_10	187.277975213318	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTATTTGTCTGTGTGTAT	NA	False	NA	-17	True	AATACA	-4	NA	20890484	20873196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_20873879_20875040_20875132_20875486_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
transcript_10951.known	chr11	+	1157	9	FSM	ENSMUSG00000020407.14	ENSMUST00000101525.9	1157	9	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	904.856126339983	1886	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGACTCTGCGGTAGA	NA	False	NA	26	True	AATAAA	-20	NA	9068106	9086170	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_9068163_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
transcript_10953.known	chr11	+	1277	9	FSM	ENSMUSG00000020407.14	ENSMUST00000020677.8	1277	9	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	932.389931506663	938	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACATTGTGTGACTCTGC	NA	False	NA	20	True	AATAAA	-14	NA	9068102	9086164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_9068285_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
transcript_10971.known	chr11	+	1252	9	FSM	ENSMUSG00000020407.14	ENSMUST00000164791.8	1252	9	0	0	0	0	multi-exon	FALSE	canonical	3	2502	junction_1	159.654656602932	15485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTGTGTGACTCTGCGGT	NA	False	NA	23	True	AATAAA	-17	NA	9068506	9086167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_9068661_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
transcript_10972.known	chr11	+	621	6	FSM	ENSMUSG00000020407.14	ENSMUST00000130522.8	621	6	0	0	0	0	multi-exon	FALSE	canonical	3	2502	junction_1	103.683364142952	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCATTGGCACTTCAGGCG	NA	False	NA	NA	False	NA	NA	NA	9068547	9083322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_9068661_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233
transcript_10974.nnic	chr11	-	3012	4	NNC	ENSMUSG00000035455.13	novel	2961	3	NA	NA	0	-88	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	293.968630223627	450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGACGGAGTTGCTTCAT	NA	False	NA	-9	True	AATAAA	-20	NA	11758959	11750375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_11753064_11756095_11756216_11758021_11758161_11758894
transcript_10978.known	chr11	-	421	2	FSM	ENSMUSG00000035455.13	ENSMUST00000150714.2	421	2	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGTGTACAGGAGATGAT	NA	False	NA	NA	False	AATAGA	-17	NA	11758948	11752696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_11753064_11758894
transcript_10979.known	chr11	-	2807	3	FSM	ENSMUSG00000035455.13	ENSMUST00000109664.2	2807	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	194	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAGCAAGATGTAATCTT	NA	False	NA	NA	False	AATAAA	-11	NA	11758932	11750551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_11753064_11755958_11756216_11758894
transcript_10983.nnic	chr11	-	2378	15	NNC	ENSMUSG00000020182.17	novel	1922	15	NA	NA	-2115	0	at_least_one_novel_splicesite	TRUE	canonical	3	14	junction_14	27.1151174040743	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTGAGTAAGCGTCTT	3523	False	NA	-1	True	AATAAA	-21	NA	11832744	11764100	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11774848_11774869_11779101_11779179_11785741_11785810_11789397_11789493_11796635_11796703_11813650_11813795_11814893_11815029_11823133_11823254_11826244_11826359_11830441_11830651_11832251
transcript_10984.known	chr11	-	1954	15	FSM	ENSMUSG00000020182.17	ENSMUST00000109659.9	1954	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_14	28.5478474116129	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTATTGAGTAAGCGTC	NA	False	NA	-3	True	AATAAA	-19	NA	11840408	11764102	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11774848_11774869_11779101_11779179_11785741_11785810_11789397_11789493_11796635_11796703_11813650_11813795_11814893_11815029_11823133_11823254_11826244_11826359_11830441_11830651_11840337
transcript_10993.nic	chr11	-	1228	6	ISM	ENSMUSG00000020182.17	ENSMUST00000109659.9	1954	15	60935	-2	-6552	0	3prime_fragment	FALSE	canonical	3	63	junction_5	20.3666393889615	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTGAGTAAGCGTCTT	NA	False	NA	-1	True	AATAAA	-21	NA	11779473	11764100	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11774848_11774869_11779101
transcript_10998.nnic	chr11	-	1178	5	NNC	ENSMUSG00000020182.17	novel	1922	15	NA	NA	47	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_4	40.5362492098122	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTGAGTAAGCGTCTT	NA	False	NA	-1	True	AATAAA	-21	NA	11772874	11764100	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11772532
transcript_11.known	ERCC-00025	+	1978	1	FSM	ERCC-00025A	DQ883689	1978	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00025_+_0_2000
transcript_11000.known	chr11	-	964	5	FSM	ENSMUSG00000020182.17	ENSMUST00000136810.8	964	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	46.0271658914602	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTATTGAGTAAGCGTC	NA	False	NA	-3	True	AATAAA	-19	NA	11772921	11764102	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11772791
transcript_11009.nnic	chr11	+	1151	3	NNC	ENSMUSG00000086391.2	novel	1075	4	NA	NA	13920	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	3	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTGTAAATATTTTATTT	2639	False	NA	NA	False	NA	NA	NA	11832042	11835321	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_11832389_11832956_11833080_11834639
transcript_11010.nnic	chr11	+	1024	3	NNC	ENSMUSG00000086391.2	novel	1075	4	NA	NA	14271	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5.5	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTGTAAATATTTTATTT	2990	False	NA	NA	False	NA	NA	NA	11832393	11835321	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_11832613_11832956_11833080_11834639
transcript_11011.known	chr11	+	1075	4	FSM	ENSMUSG00000086391.2	ENSMUST00000151032.2	1075	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.18544972870135	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTGTAAATATTTTATTT	8316	False	NA	NA	False	NA	NA	NA	11818122	11835321	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_11818200_11820963_11821157_11832956_11833080_11834639
transcript_11012.known	chr11	-	741	3	FSM	ENSMUSG00000020182.17	ENSMUST00000145033.8	741	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	14.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTTCCTGTGTCACTCCT	5638	False	NA	NA	False	AATAAA	-18	NA	11830629	11823336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_11823776_11826244_11826359_11830441
transcript_11013.known	chr11	-	5061	17	FSM	ENSMUSG00000020176.18	ENSMUST00000093321.12	5061	17	0	0	0	0	multi-exon	TRUE	canonical	3	35	junction_14	7.38135319572231	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGTGTCCTGTCGTGTTT	NA	False	NA	NA	False	AATAAA	-16	NA	11987401	11880507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_11883610_11884198_11884293_11886717_11886806_11887000_11887068_11887806_11887924_11888409_11888485_11893881_11893981_11894815_11894927_11895494_11895633_11895963_11896033_11896686_11896803_11901502_11901660_11904743_11904909_11917531_11917686_11920422_11920643_11937595_11937675_11987191
transcript_11021.known	chr11	+	379	1	FSM	ENSMUSG00000081631.2	ENSMUST00000121451.2	379	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	885	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACATTGGTCTGCAATGT	NA	False	NA	NA	False	NA	NA	NA	14112078	14112457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_14112100_14112500
transcript_11022.nic	chr11	+	1301	4	ISM	ENSMUSG00000048834.17	ENSMUST00000208926.2	1039	5	-422	18872	-83	-18668	5prime_fragment	FALSE	canonical	2	5	junction_1	0.816496580927726	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAATGCATGTTCATTTT	NA	False	NA	NA	False	AATAAA	-21	NA	16207640	16213550	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_16208087_16209854_16210022_16211437_16211489_16212913
transcript_11025.known	chr11	-	450	4	FSM	ENSMUSG00000078974.11	ENSMUST00000109641.2	450	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	2930.40759394775	1407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCCATAACAGACATTTAT	NA	False	NA	-51	True	AATAAA	-6	NA	16458069	16451650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_16451808_16454735_16454839_16456372_16456473_16457979
transcript_11026.known	chr11	-	779	4	FSM	ENSMUSG00000078974.11	ENSMUST00000178855.8	779	4	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_3	2890.84082347449	1599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTTATCAAATTTTAGTAA	NA	False	NA	-38	True	AATAAA	-19	NA	16458484	16451637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_16451808_16454735_16454839_16456372_16456473_16458078
transcript_11033.known	chr11	-	754	4	FSM	ENSMUSG00000078974.11	ENSMUST00000166950.8	754	4	0	0	0	0	multi-exon	FALSE	canonical	3	4864	junction_3	651.205207459386	19965	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTTATCAAATTTTAGTAA	NA	False	NA	-38	True	AATAAA	-19	NA	16458484	16451637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_16451808_16454735_16454839_16456372_16456473_16458103
transcript_11034.known	chr11	-	410	2	FSM	ENSMUSG00000078974.11	ENSMUST00000138695.2	410	2	0	0	0	0	multi-exon	FALSE	canonical	3	4864	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGCTCGCGAGTCAATAAA	NA	False	NA	NA	False	NA	NA	NA	16458132	16456091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_16456473_16458103
transcript_11035.known	chr11	+	2943	16	FSM	ENSMUSG00000020122.17	ENSMUST00000102884.10	2943	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.92757763930679	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCCTCTTAGTTTCCAAG	NA	False	NA	NA	False	AATAAA	-19	NA	16702202	16837923	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_16702571_16808895_16809048_16810067_16810252_16812945_16813081_16817230_16817300_16818107_16818227_16819218_16819361_16820975_16821093_16821582_16821710_16821801_16821876_16822845_16822937_16824959_16825160_16828126_16828260_16831463_16831555_16833455_16833614_16837140
transcript_11037.nic	chr11	-	1177	5	NIC	ENSMUSG00000087060.8	novel	600	6	NA	NA	-34	0	combination_of_known_junctions	TRUE	canonical	3	6	junction_3	9.28372231381357	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGGTGTATCGTTTATTT	NA	False	NA	NA	False	ATTAAA	-21	NA	16901152	16885153	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_16885927_16886454_16886565_16887372_16887485_16900881_16900931_16901019
transcript_11039.known	chr11	-	747	5	FSM	ENSMUSG00000087060.8	ENSMUST00000136053.8	747	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	9.35414346693485	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCACAGAAGAATATTTTG	NA	False	NA	NA	False	CATAAA	-28	NA	16901282	16885628	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_16885842_16886454_16886565_16887372_16887485_16900881_16900931_16901019
transcript_11041.nic	chr11	-	745	5	NIC	ENSMUSG00000087060.8	novel	600	6	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_3	9.28372231381357	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTAATTTTATTTTTATG	NA	False	NA	NA	False	NA	NA	NA	16901152	16885585	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_16885927_16886454_16886565_16887372_16887485_16900881_16900931_16901019
transcript_11043.known	chr11	-	598	4	FSM	ENSMUSG00000087060.8	ENSMUST00000129735.8	598	4	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_3	10.4243305140746	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTAATTTTATTTTTATG	NA	False	NA	NA	False	NA	NA	NA	16901100	16885585	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_16885927_16886454_16886565_16900881_16900931_16901002
transcript_11044.known	chr11	-	941	4	FSM	ENSMUSG00000087060.8	ENSMUST00000139493.8	941	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	8.73053390247253	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAATGAAGGTGTATCGTT	NA	False	NA	NA	False	ATTAAA	-16	NA	16901118	16885158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_16885842_16886454_16886565_16900881_16900931_16901019
transcript_11048.known	chr11	-	1540	3	FSM	ENSMUSG00000087060.8	ENSMUST00000130392.8	1540	3	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	0.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGGTGTATCGTTTATTT	NA	False	NA	NA	False	ATTAAA	-21	NA	16901099	16885153	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_16886565_16900881_16900931_16901019
transcript_11053.known	chr11	+	1098	4	FSM	ENSMUSG00000044966.5	ENSMUST00000109635.2	1098	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.88561808316413	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTTTGTTTGTATTTTGC	NA	False	NA	NA	False	AAGAAA	-16	NA	16901374	16904447	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_16901432_16902255_16902465_16903141_16903682_16904155
transcript_11055.known	chr11	+	2117	4	FSM	ENSMUSG00000044966.5	ENSMUST00000061327.2	2117	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.69967317119759	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAACTTTACAGTTTCCAC	NA	False	NA	NA	False	AATAAA	-11	NA	16901409	16904772	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_16902465_16903141_16903254_16903348_16903682_16904155
transcript_11058.known	chr11	+	2859	6	FSM	ENSMUSG00000033953.11	ENSMUST00000102880.5	2859	6	0	0	0	0	multi-exon	FALSE	canonical	3	579	junction_5	55.0962793662149	608	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGAATGTATTGTGTCAG	NA	False	NA	11	True	AATAAA	-15	NA	17109262	17150375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_17109543_17132106_17132147_17142956_17143134_17144216_17144277_17144668_17144854_17148258
transcript_11060.known	chr11	-	1544	7	FSM	ENSMUSG00000020116.8	ENSMUST00000020317.8	1544	7	0	0	0	0	multi-exon	FALSE	canonical	3	1392	junction_5	81.0276016072438	1641	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGCAGTCTCTTTTTCTAA	NA	False	NA	48	True	AGTAAA	-19	NA	17161568	17153197	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_17154002_17154500_17154572_17158788_17158907_17159076_17159138_17159310_17159395_17160987_17161138_17161312
transcript_11061.known	chr11	+	2002	8	FSM	ENSMUSG00000078970.6	ENSMUST00000046955.7	2002	8	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_1	21.86601127274	785	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATATTTGGAGGCGTTGA	2471	False	NA	8	True	AATAAA	-10	NA	17161917	17183796	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_17162147_17169013_17169115_17172196_17172328_17174548_17174651_17177160_17177277_17178140_17178276_17179768_17179867_17182706
transcript_11065.known	chr11	+	684	5	FSM	ENSMUSG00000000581.9	ENSMUST00000156784.2	684	5	0	0	0	0	multi-exon	TRUE	canonical	2	9	junction_1	280.161895160637	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACGCACTCTGGGAACCC	7425	False	NA	NA	False	NA	NA	NA	17207687	17216624	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_17208008_17212647_17212795_17213608_17213676_17213950_17214007_17216530
transcript_11067.nnic	chr11	+	510	3	NNC	ENSMUSG00000086468.2	novel	550	3	NA	NA	-8	13063	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1.5	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTTTCTAGCCTTTGTAT	NA	False	NA	NA	False	NA	NA	NA	17903961	17922641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_17904086_17906632_17906739_17922361
transcript_11068.known	chr11	+	388	2	FSM	ENSMUSG00000086468.2	ENSMUST00000148496.2	388	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAAAAGGGCTATGCT	NA	False	NA	NA	False	NA	NA	NA	17904003	17905098	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_17904086_17904792
transcript_11070.known	chr11	-	3631	9	FSM	ENSMUSG00000020152.8	ENSMUST00000000137.8	3631	9	0	0	0	0	multi-exon	FALSE	canonical	3	719	junction_1	58.8430114796991	1350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAATTTTGTCTTTTTCT	1336	False	NA	-4	True	AATAAA	-19	NA	20062913	20012303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_20014860_20022455_20022589_20027187_20027334_20030022_20030173_20030661_20030799_20041294_20041368_20044229_20044446_20050822_20050934_20062804
transcript_11073.known	chr11	-	2087	6	FSM	ENSMUSG00000020152.8	ENSMUST00000132022.2	2087	6	0	0	0	0	multi-exon	FALSE	canonical	3	722	junction_1	59.9486446885999	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGCC	1382	False	NA	NA	False	NA	NA	NA	20062867	20028685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_20030173_20030661_20030799_20041294_20041368_20044229_20044446_20050822_20050934_20062804
transcript_11075.known	chr11	-	452	2	FSM	ENSMUSG00000020152.8	ENSMUST00000134779.2	452	2	0	0	0	0	multi-exon	FALSE	canonical	3	909	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTGATACATATTAGTGC	1340	False	NA	NA	False	TATAAA	-26	NA	20062909	20050586	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_20050934_20062804
transcript_11077.nnic	chr11	-	863	3	NNC	ENSMUSG00000085035.2	novel	627	2	NA	NA	-7446	190	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTCTTGGCCTCCATTAT	9110	False	NA	NA	False	NA	NA	NA	20103790	20095376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_20095695_20101422_20101772_20103594
transcript_11079.known	chr11	-	627	2	FSM	ENSMUSG00000085035.2	ENSMUST00000156150.2	627	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACACTGCTACCTGCTGAA	NA	False	NA	NA	False	NA	NA	NA	20096344	20095566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_20095695_20095845
transcript_11082.known	chr11	+	2657	6	FSM	ENSMUSG00000020149.18	ENSMUST00000163483.2	2657	6	0	0	0	0	multi-exon	FALSE	canonical	3	1848	junction_1	130.08397287906	1662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCGCTTGTTGGGTCTAT	NA	False	NA	NA	False	AATAAA	-24	NA	20151601	20176856	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_20151653_20165629_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647
transcript_11089.known	chr11	+	962	3	FSM	ENSMUSG00000020149.18	ENSMUST00000132285.8	962	3	0	0	0	0	multi-exon	FALSE	canonical	3	1848	junction_1	46.5	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAAGAAAAGGA	NA	False	NA	NA	False	AAAACA	-45	NA	20151438	20169487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_20151653_20165629_20165703_20168812
transcript_11090.known	chr11	-	4804	7	FSM	ENSMUSG00000044066.15	ENSMUST00000050611.14	4804	7	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_3	29.8756682863422	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTGGTGTTGTATCATTT	3055	False	NA	NA	False	ATTAAA	-23	NA	20199418	20177036	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_20179482_20180423_20180595_20186005_20186103_20188465_20188589_20189195_20190699_20191885_20192239_20199306
transcript_11092.known	chr11	-	2171	4	FSM	ENSMUSG00000044066.15	ENSMUST00000109596.8	2171	4	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	18.3726850393609	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGTAGCTCAGTTGACT	3055	False	NA	-8	True	AATAAA	-17	NA	20199418	20188385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_20188589_20189195_20190699_20191885_20192239_20199306
transcript_11094.known	chr11	-	2788	3	FSM	ENSMUSG00000044066.15	ENSMUST00000162811.2	2788	3	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_1	11	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTGTAGCTCAGTTGAC	3044	False	NA	-9	True	AATAAA	-16	NA	20199429	20188386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_20190699_20191885_20192239_20199306
transcript_11095.known	chr11	-	3872	8	FSM	ENSMUSG00000020142.13	ENSMUST00000004634.7	3872	8	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_4	11.5440593433354	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGAGTAACGTGTTTTTC	7790	False	NA	-5	True	NA	NA	NA	20282684	20252204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_20254501_20256465_20256601_20257891_20258087_20258403_20258638_20263915_20264083_20268659_20268723_20270191_20270235_20281945
transcript_11098.nic	chr11	-	2580	6	ISM	ENSMUSG00000020142.13	ENSMUST00000109594.8	3926	8	-42	4644	-42	-4619	5prime_fragment	FALSE	canonical	3	286	junction_2	12.5698050899765	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTTACAGTTTGTTTTTG	7719	False	NA	NA	False	NA	NA	NA	20282755	20256823	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_20258087_20258403_20258638_20263915_20264083_20268659_20268723_20270191_20270235_20281945
transcript_11099.nic	chr11	-	1607	6	ISM	ENSMUSG00000020142.13	ENSMUST00000109594.8	3926	8	-42	5617	-42	-5592	5prime_fragment	FALSE	canonical	3	286	junction_2	12.5698050899765	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCTCCTCTGTAAAGGTG	7719	False	NA	NA	False	AAAAAG	-13	NA	20282755	20257796	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_20258087_20258403_20258638_20263915_20264083_20268659_20268723_20270191_20270235_20281945
transcript_11100.nnic	chr11	-	963	2	NNC	ENSMUSG00000020142.13	novel	3926	8	NA	NA	-40	-29276	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGTTGCCCAGCTACGTG	7721	False	NA	NA	False	AATAAA	-21	NA	20282753	20281480	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_20281636_20281945
transcript_11104.nnic	chr11	-	1861	2	Genic_Genomic	ENSMUSG00000078965.6	novel	1002	1	NA	NA	-110845	197	multi-exon	FALSE	canonical	0	0	junction_1	0	5358	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAAGCCTTTAAAGCAC	NA	False	NA	NA	False	AATAAA	-33	NA	20396858	20284814	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr11_-_20286086_20396268
transcript_11105.nnic	chr11	-	1136	2	Genic_Genomic	ENSMUSG00000078965.6	novel	1002	1	NA	NA	-73	190	multi-exon	FALSE	canonical	2	150	junction_1	0	200	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGAAGCCTTT	4388	False	NA	NA	False	AATAAA	-26	NA	20286086	20284821	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr11_-_20285876_20286004
transcript_11106.known	chr11	+	399	1	FSM	ENSMUSG00000083878.4	ENSMUST00000119032.2	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	410	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTTATGCCATATTTTCA	NA	False	NA	NA	False	AAAACA	-16	NA	20396411	20396810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_20396400_20396800
transcript_11107.nnic	chr11	+	2000	3	NIC	ENSMUSG00000049800.14	novel	639	3	NA	NA	-85	58	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	3	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATATATATCTATATTATT	NA	False	NA	22	True	NA	NA	NA	20493167	20599123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_20493761_20545129_20545215_20597801
transcript_11108.known	chr11	+	5515	2	FSM	ENSMUSG00000049800.14	ENSMUST00000109586.3	5515	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTCACAGTTTTCTTGT	NA	False	NA	17	True	AATAAA	-17	NA	20581978	20603021	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_20582274_20597801
transcript_11109.known	chr11	-	3998	9	FSM	ENSMUSG00000049659.16	ENSMUST00000035350.12	3998	9	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_7	17.066048165876	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGCCTTTTGTCTTTGTA	9260	False	NA	NA	False	AATAAA	-16	NA	20691589	20635083	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_20636199_20642464_20642589_20648312_20648374_20653710_20653834_20658680_20658738_20659619_20659747_20662163_20662316_20675684_20677640_20691305
transcript_11113.known	chr11	-	3362	5	FSM	ENSMUSG00000042363.15	ENSMUST00000047028.9	3362	5	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_4	26.8269920043228	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTCTGGGTTATTACAT	NA	False	NA	-3	True	AATAAA	-17	NA	20781056	20773575	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_20776516_20779268_20779447_20780037_20780127_20780275_20780348_20780973
transcript_1112.known	chr1	-	716	1	FSM	ENSMUSG00000041859.11	ENSMUST00000188112.2	716	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCATGCTTTGTGCTTTAA	NA	False	NA	-12	True	AGTAAA	-24	NA	20873945	20873229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_20873200_20873900
transcript_11121.nic	chr11	-	597	4	ISM	ENSMUSG00000042363.15	ENSMUST00000047028.9	3362	5	-18	5536	-18	200	5prime_fragment	FALSE	canonical	3	286	junction_3	14.8847423745107	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTCTGTTTGCTGATAGA	NA	False	NA	NA	False	AATAAA	-12	NA	20781074	20779111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_20779447_20780037_20780127_20780275_20780348_20780973
transcript_11122.known	chr11	+	4323	23	FSM	ENSMUSG00000020128.16	ENSMUST00000006221.14	4323	23	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_2	46.1409984237141	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTTTCAATGGTACAGTA	NA	False	NA	33	True	AATAAA	-29	NA	21189280	21271136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_21189372_21213198_21213355_21214629_21214872_21218784_21218864_21221703_21221739_21224997_21225130_21227674_21228061_21241032_21241160_21242023_21242132_21245340_21245397_21248753_21248851_21249977_21250319_21255650_21255781_21256365_21256548_21256908_21257022_21258738_21258803_21261076_21261183_21262239_21262328_21262850_21262973_21263083_21263165_21264918_21265027_21266791_21266887_21269752
transcript_11125.known	chr11	-	2683	10	FSM	ENSMUSG00000001891.17	ENSMUST00000102875.11	2683	10	0	0	0	0	multi-exon	TRUE	canonical	3	61	junction_9	120.111779214916	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTTTAAGTCTGTTT	NA	False	NA	NA	False	AATATA	-18	NA	21320477	21271137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_21272130_21273198_21273304_21278870_21279114_21279724_21279923_21280833_21281132_21282415_21282550_21283624_21283811_21303348_21303457_21304278_21304407_21320186
transcript_11126.known	chr11	-	2044	10	FSM	ENSMUSG00000001891.17	ENSMUST00000060895.6	2044	10	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_7	61.1714853284106	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGCTGTCTAGTGCTCA	NA	False	NA	-7	True	AATAAA	-21	NA	21321201	21271672	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_21272130_21273198_21273304_21278870_21279114_21279724_21279923_21280833_21281132_21282415_21282550_21283624_21283811_21303348_21303457_21304278_21304407_21321014
transcript_11135.nnic	chr11	-	1786	8	NNC	ENSMUSG00000001891.17	novel	2044	10	NA	NA	-6824	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_7	143.823020495642	73	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGCTGTCTAGTGCTCA	NA	False	NA	-7	True	AATAAA	-21	NA	21286716	21271672	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_21272130_21273198_21273304_21278870_21279114_21279724_21279923_21280833_21281132_21282415_21282550_21283624_21283811_21286551
transcript_1114.known	chr1	+	2146	11	FSM	ENSMUSG00000041809.6	ENSMUST00000038447.6	2146	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	4.06939798987516	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGGTGCCTTATTTGGAG	NA	False	NA	12	True	NA	NA	NA	21021911	21061065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_21022021_21025558_21025781_21030353_21030642_21031376_21031527_21037547_21037741_21042998_21043220_21045122_21045264_21048866_21049081_21049633_21049782_21059591_21059827_21060840
transcript_11141.known	chr11	+	2792	18	FSM	ENSMUSG00000020319.10	ENSMUST00000020568.10	2792	18	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	3.74350648863466	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAATTTCTTCTCCTGCTT	NA	False	NA	NA	False	NA	NA	NA	21522234	21848989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_21522371_21602225_21602311_21609994_21610043_21610888_21610940_21613996_21614068_21614325_21614386_21639567_21639683_21641769_21641904_21645113_21645306_21661461_21662072_21671102_21671292_21674512_21674637_21698877_21698942_21763359_21763463_21807446_21807610_21834983_21835088_21836259_21836289_21848475
transcript_11152.known	chr11	+	1568	4	FSM	ENSMUSG00000049904.8	ENSMUST00000059319.8	1568	4	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_3	9.0921211313239	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTTATCTGTGTAGTTC	NA	False	NA	7	True	ATTAAA	-16	NA	22462087	22469234	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_22462584_22467187_22467292_22467407_22467522_22468380
transcript_11153.nnic	chr11	+	1238	4	NNC	ENSMUSG00000049904.8	novel	1568	4	NA	NA	122	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	27.8846831711525	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTTATCTGTGTAGTTC	NA	False	NA	7	True	ATTAAA	-16	NA	22462209	22469234	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_22462376_22467187_22467292_22467407_22467522_22468380
transcript_11158.known	chr11	+	933	2	FSM	ENSMUSG00000086256.2	ENSMUST00000142151.2	933	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTATTGAGTTTGTAGCTT	NA	False	NA	NA	False	NA	NA	NA	22567407	22568487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_22567831_22567977
transcript_11159.known	chr11	+	1257	3	FSM	ENSMUSG00000085803.2	ENSMUST00000148364.2	1257	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGTTTTTAGAAAATTTT	NA	False	NA	NA	False	AATAAA	-15	NA	22684037	22687937	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_22684201_22685598_22685684_22686928
transcript_1116.known	chr1	-	6492	11	FSM	ENSMUSG00000041779.6	ENSMUST00000037998.6	6492	11	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	7.25534285888682	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATCTCTGATAGGCTTCAC	NA	False	NA	-5	True	AATAAA	-24	NA	21149453	21066522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_21071860_21073193_21073358_21074061_21074206_21074449_21074555_21075790_21075862_21076373_21076459_21077076_21077136_21083016_21083134_21083625_21083736_21107620_21107685_21149217
transcript_11161.known	chr11	-	2602	2	FSM	ENSMUSG00000051650.12	ENSMUST00000055549.4	2602	2	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	0	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATATACTAGTATCTTGTAA	3582	False	NA	-18	True	AATAAA	-18	NA	22810488	22784864	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_22787196_22810217
transcript_11163.known	chr11	-	2746	3	FSM	ENSMUSG00000098650.2	ENSMUST00000160826.2	2746	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1098	323	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTATAATAAGTGATACTCT	NA	False	NA	-25	True	AATAAA	-24	NA	22932090	22784743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_22787196_22906410_22906693_22932078
transcript_11165.known	chr11	+	663	2	FSM	ENSMUSG00000092626.2	ENSMUST00000174568.2	663	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTGTGTACTTGATTAAC	NA	False	NA	NA	False	AATAAA	-20	NA	22808930	22811264	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_22809169_22810839
transcript_11166.nnic	chr11	+	1141	2	NNC	ENSMUSG00000092626.2	novel	663	2	NA	NA	933	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTGTGTACTTGATTAAC	NA	False	NA	NA	False	AATAAA	-20	NA	22809863	22811264	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_22810580_22810839
transcript_11176.known	chr11	-	473	2	FSM	ENSMUSG00000051355.19	ENSMUST00000071068.9	473	2	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	0	324	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGGGTAAAAAAGAGAAACC	NA	False	NA	-31	True	AATATA	-10	NA	22932252	22849758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_22850058_22932078
transcript_11180.known	chr11	+	2484	14	FSM	ENSMUSG00000007739.11	ENSMUST00000173867.8	2484	14	0	0	0	0	multi-exon	FALSE	canonical	3	4673	junction_2	338.771431558561	3293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGCCAGATGTTAGGTCT	NA	False	NA	NA	False	NA	NA	NA	22940518	22953780	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
transcript_11181.known	chr11	+	1736	8	FSM	ENSMUSG00000007739.11	ENSMUST00000174244.8	1736	8	0	0	0	0	multi-exon	FALSE	canonical	3	4673	junction_2	250.300227889694	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAATGAAAACCACAT	NA	False	NA	NA	False	NA	NA	NA	22940638	22949876	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032
transcript_11185.nic	chr11	+	2033	5	NIC	ENSMUSG00000049811.18	novel	1935	4	NA	NA	-42	0	combination_of_known_junctions	TRUE	canonical	2	2	junction_1	6.68954408012983	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTACCTCAAGACATTCCT	NA	False	NA	8	True	AATAAA	-19	NA	22958422	22973730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_22958627_22965658_22965885_22969999_22971134_22971493_22971662_22973429
transcript_11186.known	chr11	+	1947	5	FSM	ENSMUSG00000049811.18	ENSMUST00000109557.10	1947	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	6.96419413859206	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATTCCTGACACGGTTTG	NA	False	NA	19	True	AATAAA	-30	NA	22958464	22973741	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_22958627_22963538_22963648_22965654_22965885_22969999_22971134_22973429
transcript_11187.known	chr11	+	1935	4	FSM	ENSMUSG00000049811.18	ENSMUST00000172602.9	1935	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	7.40870359029762	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCCATGTACCTCAAGAC	NA	False	NA	2	True	AATAAA	-13	NA	22958346	22973724	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_22958627_22965658_22965885_22969999_22971134_22973429
transcript_11194.known	chr11	+	1047	3	FSM	ENSMUSG00000049811.18	ENSMUST00000151877.2	1047	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	2	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTACCTCAAGACATTCCT	NA	False	NA	8	True	AATAAA	-19	NA	22970555	22973730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_22971134_22971493_22971662_22973429
transcript_11195.known	chr11	+	3105	2	FSM	ENSMUSG00000085665.2	ENSMUST00000128996.2	3105	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACAAGTGTCAGCTCTA	7009	False	NA	NA	False	AATAAA	-14	NA	23017997	23025574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_23018407_23022878
transcript_11196.known	chr11	+	6004	25	FSM	ENSMUSG00000020290.15	ENSMUST00000102869.8	6004	25	0	0	0	0	multi-exon	FALSE	canonical	2	1142	junction_7	252.998761388053	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATCAACCAGTGCAAATTC	NA	False	NA	NA	False	AATAAA	-41	NA	23206077	23248249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_23206718_23211834_23211967_23217661_23217764_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228325_23228675_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
transcript_11205.nic	chr11	+	485	3	ISM	ENSMUSG00000056342.17	ENSMUST00000137823.8	11363	80	-67	156077	-46	-86985	5prime_fragment	FALSE	canonical	3	16	junction_1	2.5	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCAATAGAAAAAAAATCAAA	275	False	NA	NA	False	AATACA	-13	NA	23256848	23283667	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_23257017_23270660_23270749_23283438
transcript_11213.known	chr11	-	3023	9	FSM	ENSMUSG00000020288.14	ENSMUST00000020529.13	3023	9	0	0	0	0	multi-exon	TRUE	canonical	3	225	junction_2	27.6394193137265	400	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGCACTGAAATCCTATTG	NA	False	NA	NA	False	AATAAA	-15	NA	23448030	23438546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_23440571_23440668_23440721_23441012_23441115_23441474_23441583_23442217_23442307_23443278_23443394_23444978_23445065_23446690_23446882_23447774
transcript_1122.nnic	chr1	+	693	2	NNC	ENSMUSG00000100819.2	novel	571	5	NA	NA	-12571	440	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	22	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGTTCCTTCAAGTAATT	NA	False	NA	NA	False	NA	NA	NA	21236640	21258091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_21236776_21257533
transcript_11232.known	chr11	+	3559	18	FSM	ENSMUSG00000020280.13	ENSMUST00000058163.11	3559	18	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	15.9356404539699	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAGCATTGTTTTTTTTT	NA	False	NA	10	True	ATTAAA	-17	NA	23616006	23682876	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_23616454_23617277_23617415_23622507_23622757_23623237_23623325_23649929_23649965_23652889_23653002_23656884_23656947_23657522_23657569_23658757_23658823_23661195_23661282_23662199_23662326_23667561_23667619_23668575_23668653_23668748_23668805_23670103_23670222_23675431_23675575_23678974_23679075_23681320
transcript_11242.known	chr11	-	367	3	FSM	ENSMUSG00000020283.6	ENSMUST00000130811.2	367	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	213	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAACAACAGTCTTTTACC	NA	False	NA	NA	False	AATAGA	-18	NA	23615852	23599455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_23599591_23600929_23601056_23615746
transcript_11243.known	chr11	-	7466	10	FSM	ENSMUSG00000020275.10	ENSMUST00000102864.5	7466	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1.22726233524303	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGTTACAGTTTTGCTG	NA	False	NA	NA	False	AATAAA	-19	NA	23720970	23686846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_23693041_23694238_23694308_23694436_23694506_23695428_23695642_23695745_23695851_23698750_23698892_23703216_23703309_23706898_23707048_23711012_23711156_23720679
transcript_11244.known	chr11	-	3747	22	FSM	ENSMUSG00000020273.14	ENSMUST00000020513.10	3747	22	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_1	18.5612914946701	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTGTCTTTAATTTTTT	1269	False	NA	-1	True	TTTAAA	-8	NA	23845253	23812645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_23814057_23816410_23816468_23816629_23816696_23817197_23817419_23817501_23817591_23817956_23818127_23818358_23818481_23820192_23820303_23820742_23820863_23822426_23822481_23823227_23823313_23823789_23823911_23824474_23824548_23826319_23826459_23829873_23829964_23832182_23832295_23834060_23834115_23835163_23835274_23835490_23835573_23840228_23840296_23841742_23841905_23845021
transcript_11245.nnic	chr11	-	2760	17	NNC	ENSMUSG00000020273.14	novel	3747	22	NA	NA	-20	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	42.1559141017011	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGTCTTTAATTTT	1249	False	NA	-3	True	TTTAAA	-6	NA	23845273	23812647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_23813655_23818358_23818481_23820192_23820303_23820742_23820863_23822426_23822481_23823227_23823313_23823789_23823911_23824474_23824548_23826319_23826459_23829873_23829964_23832182_23832295_23834060_23834115_23835163_23835274_23835490_23835573_23840228_23840296_23841742_23841905_23845021
transcript_11246.known	chr11	+	1505	5	FSM	ENSMUSG00000000861.16	ENSMUST00000118955.2	1505	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.866025403784439	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAGGGTCTGAAGTTGTC	NA	False	NA	NA	False	AATACA	-18	NA	24030669	24123558	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_24030740_24035320_24035651_24108252_24108355_24113145_24113289_24122698
transcript_1125.known	chr1	+	1261	5	FSM	ENSMUSG00000025933.16	ENSMUST00000027064.8	1261	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	35.5984550226551	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCCTTCTCATTCATTTC	NA	False	NA	14	True	AATAAA	-14	NA	21288885	21300388	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_21289114_21295781_21295868_21296168_21296271_21296815_21296904_21299631
transcript_11253.nic	chr11	-	1830	13	NIC	ENSMUSG00000064090.15	novel	1889	13	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	30.8175635348128	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAACTTTTAAGCATTCC	NA	False	NA	-7	True	AATAAA	-28	NA	26543657	26421403	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_26421787_26426553_26426701_26433157_26433325_26436959_26437019_26439772_26439894_26448916_26449050_26484210_26484304_26485536_26485643_26497838_26497927_26499294_26499365_26500025_26500076_26541586_26541728_26543385
transcript_11254.known	chr11	-	1889	13	FSM	ENSMUSG00000064090.15	ENSMUST00000078362.13	1889	13	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_12	13.1368332899862	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAACTTTTAAGCATTCC	NA	False	NA	-7	True	AATAAA	-28	NA	26543920	26421403	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_26421787_26426553_26426701_26433157_26433325_26436959_26437019_26439772_26439894_26448916_26449050_26484210_26484304_26485536_26485643_26497838_26497927_26499294_26499365_26500025_26500076_26541586_26541728_26543589
transcript_11255.nic	chr11	-	1604	13	NIC	ENSMUSG00000064090.15	novel	1889	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_12	27.6777086399065	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAACTTTTAAGCATTCC	NA	False	NA	-7	True	AATAAA	-28	NA	26543999	26421403	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_26421787_26426553_26426701_26433157_26433325_26436959_26437019_26439772_26439894_26448916_26449050_26484210_26484304_26485536_26485643_26497838_26497927_26499294_26499365_26500025_26500076_26541586_26541728_26543953
transcript_11258.known	chr11	-	1642	12	FSM	ENSMUSG00000064090.15	ENSMUST00000109504.8	1642	12	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_9	9.82407230705347	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAGAGAAAGAGAGAGAA	NA	False	NA	75	True	NA	NA	NA	26541729	26421321	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_26421787_26426553_26426701_26433157_26433325_26436959_26437019_26439772_26439894_26448916_26449050_26484210_26484304_26485536_26485643_26497838_26497927_26499294_26499365_26500025_26500076_26541586
transcript_1126.known	chr1	+	1168	5	FSM	ENSMUSG00000025933.16	ENSMUST00000027065.12	1168	5	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_4	3.08220700148449	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTCTCATTCATTTCTAT	NA	False	NA	17	True	AATAAA	-17	NA	21288798	21300391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_21289114_21295781_21295868_21296168_21296271_21296815_21296904_21299814
transcript_11278.known	chr11	+	1187	14	FSM	ENSMUSG00000004018.10	ENSMUST00000109509.8	1187	14	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_10	68.2542237026723	959	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACCAATTTATTTGATG	NA	False	NA	3	True	AATAAA	-10	NA	26337201	26421421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_26337311_26347745_26347805_26349648_26349710_26353321_26353379_26357547_26357649_26372407_26372505_26384431_26384501_26409685_26409837_26418334_26418419_26418671_26418718_26418815_26418883_26419651_26419769_26420876_26420949_26421324
transcript_11279.known	chr11	+	2037	11	FSM	ENSMUSG00000020467.16	ENSMUST00000020759.12	2037	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	1.00498756211209	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCATGTTTGTGTTGGT	NA	False	NA	NA	False	AATAAA	-26	NA	28803203	28876743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_28803325_28804464_28804555_28817465_28817515_28817652_28818040_28860609_28860733_28864587_28864708_28865660_28865781_28866849_28866970_28871402_28871527_28871610_28871807_28876156
transcript_11281.known	chr11	+	2707	28	FSM	ENSMUSG00000020464.16	ENSMUST00000020756.9	2707	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	125.489275633577	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTGCTTGCCTACTATT	NA	False	NA	NA	False	NA	NA	NA	29080747	29111828	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_29080919_29082844_29082906_29083851_29083927_29084599_29084706_29085513_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29090006_29091223_29091321_29091663_29091767_29095428_29095500_29096795_29096833_29097297_29097365_29097443_29097534_29098277_29098332_29103231_29103339_29104143_29104216_29104301_29104366_29104815_29104900_29105714_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
transcript_11292.nnic	chr11	+	1630	19	NNC	ENSMUSG00000020464.16	novel	3368	27	NA	NA	-21	5136	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	150.53862143387	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCACTAAAGTTTATGTCTC	NA	False	NA	NA	False	NA	NA	NA	29080722	29100606	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_29080919_29082844_29082906_29083851_29083927_29084599_29084706_29085513_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29090006_29091223_29091321_29091663_29091767_29095428_29095500_29096795_29096833_29097297_29097365_29097443_29097534_29098277_29098332_29100506
transcript_11294.known	chr11	+	3368	27	FSM	ENSMUSG00000020464.16	ENSMUST00000154924.8	3368	27	0	0	0	0	multi-exon	FALSE	canonical	3	488	junction_10	52.7864403424181	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATTTTTATATCTTAGGA	NA	False	NA	8	True	AATAAA	-20	NA	29080743	29111680	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_29080919_29082844_29082906_29083851_29083927_29084599_29084706_29085513_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29090006_29091223_29091321_29091663_29091767_29095428_29095500_29096795_29096833_29097297_29097365_29097443_29097534_29098277_29098332_29103231_29104216_29104301_29104366_29104815_29104900_29105714_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
transcript_11295.known	chr11	+	5125	16	FSM	ENSMUSG00000020463.16	ENSMUST00000020755.12	5125	16	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_14	38.0796825383593	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACGTGTTTTAATCACTA	NA	False	NA	23	True	AATAAA	-35	NA	29122889	29170797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_29123448_29124672_29124729_29132446_29132546_29137950_29138575_29144572_29144651_29146173_29146291_29147092_29147210_29148792_29148925_29150700_29150804_29152866_29152909_29155545_29155705_29159316_29159487_29161115_29161256_29161606_29161792_29163593_29163797_29168455
transcript_1130.known	chr1	+	1457	7	FSM	ENSMUSG00000025934.16	ENSMUST00000027067.15	1457	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	32.5883414736007	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGGGGGAGGTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	21310812	21335885	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_21310884_21319974_21320083_21327554_21327607_21329071_21329205_21330271_21330414_21333016_21333149_21335066
transcript_11301.known	chr11	+	2410	12	FSM	ENSMUSG00000020463.16	ENSMUST00000102856.9	2410	12	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_3	30.8097333552481	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTTTTTATTCTTACTT	NA	False	NA	NA	False	AATAAA	-19	NA	29122889	29159641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_29123448_29124672_29124729_29132446_29132546_29137950_29138575_29144572_29144651_29146173_29146291_29147092_29147210_29148792_29148925_29150700_29150804_29152866_29152909_29155545_29155705_29159316
transcript_11305.known	chr11	-	1664	10	FSM	ENSMUSG00000020462.15	ENSMUST00000020754.10	1664	10	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_4	19.5037191768236	672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGATGTTTTCTCTTCA	NA	False	NA	NA	False	AATAAA	-19	NA	29197409	29171531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_29171986_29172433_29172584_29172743_29172884_29175856_29175960_29179907_29179960_29180585_29180674_29184357_29184473_29194058_29194161_29195085_29195151_29197014
transcript_11315.known	chr11	-	456	3	FSM	ENSMUSG00000020462.15	ENSMUST00000144627.2	456	3	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_1	19	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATCCATGTGTGGTTTC	NA	False	NA	NA	False	ATTAAA	-38	NA	29197068	29193823	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_29194161_29195085_29195151_29197014
transcript_11317.known	chr11	-	2126	3	FSM	ENSMUSG00000032673.6	ENSMUST00000133103.2	2126	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	1	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTTTGGGGTTTATTTT	NA	False	NA	NA	False	AATAAA	-11	NA	29465031	29461756	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_29463677_29464431_29464523_29464916
transcript_11318.known	chr11	-	918	2	FSM	ENSMUSG00000032673.6	ENSMUST00000039900.4	918	2	0	0	0	0	multi-exon	FALSE	canonical	3	382	junction_1	0	3220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTGTGTCTTTAATTTG	NA	False	NA	-1	True	AATAAA	-23	NA	29465033	29462875	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_29463677_29464916
transcript_11319.known	chr11	+	428	2	FSM	ENSMUSG00000085165.2	ENSMUST00000138402.2	428	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAGACAATTTTGTATCC	1343	False	NA	NA	False	ATTAAA	-16	NA	29465085	29467355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_29465367_29467208
transcript_11323.known	chr11	+	2425	14	FSM	ENSMUSG00000020459.15	ENSMUST00000020749.13	2425	14	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	55.902387454177	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAAATGGGCTGGAGAGAT	NA	False	NA	NA	False	NA	NA	NA	29476447	29495279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_29476488_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
transcript_11326.nic	chr11	+	2514	14	NIC	ENSMUSG00000020459.15	novel	2741	14	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	63.202408013447	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	29476405	29495248	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_29476566_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
transcript_11329.known	chr11	+	2741	14	FSM	ENSMUSG00000020459.15	ENSMUST00000093239.11	2741	14	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_5	30.3862706462472	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	29476456	29495248	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_29476844_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
transcript_11346.nic	chr11	+	1803	10	ISM	ENSMUSG00000020459.15	ENSMUST00000093239.11	2741	14	-44	4586	5	390	5prime_fragment	FALSE	canonical	3	166	junction_5	28.4331574828482	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGCAAAGATGACCTGAAAAT	NA	False	NA	NA	False	AAAAAG	-9	NA	29476412	29490662	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_29476844_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608
transcript_11350.nnic	chr11	+	1239	3	NNC	ENSMUSG00000020459.15	novel	697	2	NA	NA	5	173	intron_retention	FALSE	non_canonical	0	0	junction_2	88.5	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTAAATATTTTCCCTTCA	NA	False	NA	6	True	NA	NA	NA	29476412	29495452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_29476844_29479928_29480517_29495232
transcript_11351.known	chr11	+	1605	9	FSM	ENSMUSG00000020459.15	ENSMUST00000144321.8	1605	9	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_5	24.4716034415402	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATGGAAAAATACTTAAT	NA	False	NA	NA	False	NA	NA	NA	29476449	29490165	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_29476844_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067
transcript_11369.known	chr11	-	791	6	FSM	ENSMUSG00000020460.16	ENSMUST00000102845.11	791	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	5362.30439270282	152965	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTATTGTGCTTTATTG	NA	False	NA	-31	True	AATAAA	-16	NA	29498109	29495845	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_29496030_29496290_29496423_29496702_29496789_29497205_29497261_29497680_29497746_29497840
transcript_11370.known	chr11	-	637	5	FSM	ENSMUSG00000020460.16	ENSMUST00000102844.4	637	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	5966.04937856703	55566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTATTGTGCTTTATTG	NA	False	NA	-31	True	AATAAA	-16	NA	29497860	29495845	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_29496030_29496290_29496423_29496702_29496789_29497205_29497261_29497680
transcript_11371.known	chr11	-	928	5	FSM	ENSMUSG00000020460.16	ENSMUST00000150739.2	928	5	0	0	0	0	multi-exon	FALSE	canonical	3	7569	junction_4	3562.36217277244	473	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAACCAGAAGACAAGTAGT	NA	False	NA	-84	True	NA	NA	NA	29497882	29495898	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_29496030_29496290_29496423_29496702_29497261_29497680_29497746_29497840
transcript_11378.nnic	chr11	+	1539	7	NNC	ENSMUSG00000020458.17	novel	697	5	NA	NA	-4238	0	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_1	335.435040904594	511	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTTTAGTGTTTTA	NA	False	NA	14	True	AATAAA	-14	NA	29664324	29692916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_29664411_29683632_29683841_29686359_29686499_29690980_29691051_29691499_29691547_29691694_29691754_29691986
transcript_11379.known	chr11	+	1773	7	FSM	ENSMUSG00000020458.17	ENSMUST00000060992.6	1773	7	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	322.410409605866	622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTTTAGTGTTTTA	NA	False	NA	14	True	AATAAA	-14	NA	29668562	29692916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_29668883_29683632_29683841_29686359_29686499_29690980_29691051_29691499_29691547_29691694_29691754_29691986
transcript_11384.known	chr11	+	2257	8	FSM	ENSMUSG00000020458.17	ENSMUST00000102842.10	2257	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	364.665796116311	510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTTTAGTGTTTTA	NA	False	NA	14	True	AATAAA	-14	NA	29642946	29692916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_29643694_29655534_29655592_29683632_29683841_29686359_29686499_29690980_29691051_29691499_29691547_29691694_29691754_29691986
transcript_11394.known	chr11	-	863	4	FSM	ENSMUSG00000060923.6	ENSMUST00000074613.4	863	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	6.84754619472471	348	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTACTGTTGCCTA	NA	False	NA	NA	False	AATAAA	-15	NA	30599587	30455990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_30456440_30582207_30582318_30583685_30583703_30599300
transcript_11396.nnic	chr11	+	489	4	NNC	ENSMUSG00000087474.2	novel	1933	2	NA	NA	-1056	-1450	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5.09901951359278	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAACCAGTTCATTCAGTG	NA	False	NA	NA	False	NA	NA	NA	30699775	30704697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_30699880_30700139_30700269_30701058_30701181_30704563
transcript_11397.nnic	chr11	+	493	4	NNC	ENSMUSG00000087474.2	novel	1933	2	NA	NA	-946	-1450	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	4.64279609239471	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAACCAGTTCATTCAGTG	NA	False	NA	NA	False	NA	NA	NA	30699885	30704697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_30699994_30700139_30700269_30701058_30701181_30704563
transcript_11400.nnic	chr11	+	639	3	NNC	ENSMUSG00000087474.2	novel	1933	2	NA	NA	-946	-1450	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	1.5	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAACCAGTTCATTCAGTG	NA	False	NA	NA	False	NA	NA	NA	30699885	30704697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_30700269_30701058_30701181_30704563
transcript_11402.known	chr11	+	6491	47	FSM	ENSMUSG00000040850.18	ENSMUST00000041231.14	6491	47	0	0	0	0	multi-exon	TRUE	canonical	2	239	junction_13	60.0854464039772	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGCTGATTGTTTTTTA	NA	False	NA	17	True	AATAAA	-19	NA	30721725	30830361	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_30722225_30741091_30741233_30741921_30742039_30752813_30752859_30754289_30754440_30754962_30755027_30756254_30756330_30757702_30757826_30759835_30759929_30760782_30761049_30761977_30762165_30763662_30763753_30765227_30765293_30765557_30765709_30767730_30767830_30768088_30768159_30769003_30769072_30769927_30770144_30770915_30771074_30773058_30773155_30780349_30780406_30782133_30782191_30782388_30782445_30782531_30782631_30784085_30784149_30784273_30784370_30785335_30785468_30787281_30787492_30788884_30789022_30791568_30791623_30791990_30792121_30793506_30793589_30795179_30795334_30795827_30795898_30797397_30797524_30798046_30798200_30800602_30800708_30801142_30801235_30802672_30802805_30803176_30803386_30806029_30806116_30811347_30811477_30815433_30815590_30824117_30824281_30826745_30826880_30828378_30828518_30829663
transcript_11407.known	chr11	+	3228	10	FSM	ENSMUSG00000020305.14	ENSMUST00000020551.13	3228	10	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_7	7.49979423586054	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGTTATTATTGTGGTTT	NA	False	NA	NA	False	TATAAA	-14	NA	30904394	31052704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_30904570_30948312_30948522_30978907_30979067_31005457_31005571_31006101_31006238_31008821_31009000_31011388_31011587_31031361_31031623_31035000_31035132_31051036
transcript_1141.nnic	chr1	+	1127	6	NNC	ENSMUSG00000025934.16	novel	1457	7	NA	NA	3228	192	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	18.4867520132661	160	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGAGTATTCGAACATT	NA	False	NA	14	True	AATAAA	-20	NA	21326972	21335437	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_21327270_21327554_21327607_21329071_21329205_21330271_21330414_21333016_21333149_21335066
transcript_11415.known	chr11	+	1297	4	FSM	ENSMUSG00000020305.14	ENSMUST00000148163.2	1297	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	40.0693842672377	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTTTCTGTGAATATAAAA	NA	False	NA	NA	False	AATAAA	-15	NA	30904447	30979760	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_30904570_30948312_30948522_30978692_30978806_30978907
transcript_11419.known	chr11	-	2532	14	FSM	ENSMUSG00000020311.18	ENSMUST00000073192.14	2532	14	0	0	0	0	multi-exon	TRUE	canonical	2	57	junction_8	15.3746121325012	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGTTCATGCTTTTGTTC	NA	False	NA	NA	False	AATAAA	-12	NA	30904152	30880773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_30881849_30884671_30884748_30884981_30885060_30889496_30889622_30893038_30893099_30893698_30893861_30898078_30898209_30898299_30898524_30899942_30899978_30900559_30900624_30900740_30900819_30901306_30901388_30902571_30902677_30903913
transcript_11424.known	chr11	-	1315	3	FSM	ENSMUSG00000020309.7	ENSMUST00000101394.5	1315	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	6	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCTAAGTGTCATTTCT	NA	False	NA	NA	False	AATAAA	-33	NA	30936350	30926706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_30927747_30929564_30929601_30936111
transcript_11425.known	chr11	-	1018	2	FSM	ENSMUSG00000020309.7	ENSMUST00000020553.5	1018	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAATTGTACTTTTCT	NA	False	NA	NA	False	ATTAAA	-20	NA	30936334	30926951	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_30927747_30936111
transcript_11430.known	chr11	-	3940	4	FSM	ENSMUSG00000020303.3	ENSMUST00000020546.3	3940	4	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_2	14.613540144522	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGACCTGCTCCTGAGCAG	NA	False	NA	NA	False	AATAAA	-12	NA	31320074	31307306	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_31310529_31315331_31315544_31317725_31317869_31319711
transcript_11435.nnic	chr11	-	880	4	NNC	ENSMUSG00000020303.3	novel	544	2	NA	NA	-50	586	intron_retention	FALSE	canonical	3	7	junction_1	66.9676538835479	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGCAGCCTTTTCGTCTTT	NA	False	NA	NA	False	NA	NA	NA	31320124	31314854	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_31314967_31315331_31315544_31317725_31317869_31319711
transcript_11436.known	chr11	-	447	3	FSM	ENSMUSG00000020303.3	ENSMUST00000152094.2	447	3	0	0	0	0	multi-exon	TRUE	canonical	2	6	junction_2	6	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAATGACATTTTCTTT	NA	False	NA	NA	False	AATACA	-22	NA	31320047	31317998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_31318328_31319711_31319794_31320011
transcript_11437.nic	chr11	-	783	2	ISM	ENSMUSG00000020303.3	ENSMUST00000152094.2	447	3	-118	0	-91	0	intron_retention	FALSE	canonical	3	18	junction_1	0	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAATGACATTTTCTTT	NA	False	NA	NA	False	AATACA	-22	NA	31320165	31317998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_31318328_31319711
transcript_11438.nic	chr11	-	717	2	ISM	ENSMUSG00000020303.3	ENSMUST00000152094.2	447	3	-118	66	-91	-62	intron_retention	FALSE	canonical	3	18	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGATTGTTATATTTGTT	NA	False	NA	NA	False	ACTAAA	-1	NA	31320165	31318064	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_31318328_31319711
transcript_11439.nic	chr11	-	536	2	ISM	ENSMUSG00000020303.3	ENSMUST00000152094.2	447	3	-56	185	-29	-181	intron_retention	FALSE	canonical	3	18	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTATTTTCCCTGTGGGTT	NA	False	NA	NA	False	CATAAA	-18	NA	31320103	31318183	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_31318328_31319711
transcript_11440.known	chr11	-	1394	4	FSM	ENSMUSG00000044502.17	ENSMUST00000058060.14	1394	4	0	0	0	0	multi-exon	FALSE	canonical	3	568	junction_1	23.4141457717813	333	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGACGATCTTTCCC	NA	False	NA	-29	True	AATAAA	-22	NA	31621885	31615180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_31615868_31616736_31616934_31619243_31619369_31621500
transcript_11441.nnic	chr11	-	915	5	NNC	ENSMUSG00000085772.8	novel	715	5	NA	NA	20899	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	1.11803398874989	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACTGCTTTAAAAGTACAT	NA	False	NA	NA	False	AATAAA	-21	NA	31753574	31750687	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_31750814_31750949_31751038_31752331_31752449_31752829_31752982_31753142
transcript_11447.known	chr11	-	715	5	FSM	ENSMUSG00000085772.8	ENSMUST00000134944.2	715	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.11803398874989	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACTGCTTTAAAAGTACAT	5106	False	NA	NA	False	AATAAA	-21	NA	31774524	31750687	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_31750814_31750949_31751038_31752331_31752449_31752829_31752982_31774292
transcript_11451.known	chr11	+	2000	5	FSM	ENSMUSG00000020299.7	ENSMUST00000102829.4	2000	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	0.707106781186548	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATTGAGTATCCTTGGCC	2284	False	NA	NA	False	GATAAA	-14	NA	31915591	31929651	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_31915952_31923555_31923642_31925036_31925136_31926785_31926831_31928241
transcript_11453.known	chr11	+	2239	5	FSM	ENSMUSG00000020297.11	ENSMUST00000020537.9	2239	5	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	2.06155281280883	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTGACTGTCTGTCCAT	NA	False	NA	21	True	AATAAA	-17	NA	31950462	32009202	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_31950597_31951730_31951881_31967650_31967735_32005012_32005124_32007442
transcript_11457.known	chr11	+	821	5	FSM	ENSMUSG00000040767.11	ENSMUST00000039601.10	821	5	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_3	16.768646337734	4828	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATCAGAAAGCCATAGT	NA	False	NA	21	True	AATAAA	-22	NA	32155414	32158984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_32155664_32156959_32157051_32157556_32157663_32158333_32158409_32158684
transcript_11464.known	chr11	+	375	3	FSM	ENSMUSG00000040767.11	ENSMUST00000155736.2	375	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	204	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATCAGCTGGTGAGTGCG	NA	False	NA	NA	False	NA	NA	NA	32155457	32157651	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_32155664_32156959_32157051_32157573
transcript_11469.known	chr11	-	2865	13	FSM	ENSMUSG00000020289.16	ENSMUST00000020530.12	2865	13	0	0	0	0	multi-exon	TRUE	canonical	3	148	junction_6	11.6770786871831	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTTTGCTGAGGCTGAT	4567	False	NA	NA	False	ATTAAA	-15	NA	32217707	32181962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_32183117_32183903_32184097_32184731_32184922_32186787_32186918_32187299_32187407_32189796_32189954_32191797_32191936_32198144_32198227_32200124_32200279_32203874_32203950_32205438_32205569_32213024_32213095_32217422
transcript_11480.known	chr11	-	406	2	FSM	ENSMUSG00000020289.16	ENSMUST00000132856.2	406	2	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGATGGATGAGGCATGT	4723	False	NA	NA	False	NA	NA	NA	32217551	32212817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_32213095_32217422
transcript_11481.known	chr11	+	1737	4	FSM	ENSMUSG00000020287.16	ENSMUST00000020528.14	1737	4	0	0	0	0	multi-exon	FALSE	canonical	3	333	junction_1	11.8977121983832	883	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGATGGCACGCGTGTGT	NA	False	NA	6	True	NA	NA	NA	32176510	32182700	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_32176718_32177751_32177950_32179848_32180054_32181573
transcript_11482.known	chr11	+	1404	5	FSM	ENSMUSG00000020287.16	ENSMUST00000142964.8	1404	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	173.059780133918	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCCAAGTCTCAGCCAGAA	NA	False	NA	25	True	AATAAA	-22	NA	32176504	32182022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_32176718_32177751_32177950_32179246_32179617_32179879_32180054_32181573
transcript_11483.known	chr11	+	699	3	FSM	ENSMUSG00000069919.8	ENSMUST00000093209.4	699	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGCCTGAGTAGGAAGA	6997	False	NA	NA	False	NA	NA	NA	32233510	32234465	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_32233802_32233923_32234129_32234262
transcript_11484.known	chr11	+	562	3	FSM	ENSMUSG00000073063.4	ENSMUST00000101387.4	562	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.5	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCCTGGACGCAGAGGGG	NA	False	NA	NA	False	AGTAAA	-20	NA	32236964	32237727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_32237108_32237202_32237408_32237513
transcript_11485.known	chr11	+	554	3	FSM	ENSMUSG00000069917.8	ENSMUST00000093207.4	554	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAGCCTGCATGCCTGGT	NA	False	NA	NA	False	AATAAA	-12	NA	32246488	32247298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_32246619_32246740_32246946_32247079
transcript_11487.known	chr11	+	604	3	FSM	ENSMUSG00000020295.2	ENSMUST00000020535.2	604	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTTGAGCCTGGTGTGTC	NA	False	NA	NA	False	NA	NA	NA	32250068	32250873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_32250213_32250307_32250513_32250618
transcript_11489.known	chr11	+	1012	3	FSM	ENSMUSG00000044949.5	ENSMUST00000051053.5	1012	3	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_1	5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATTACAATTTCTAATTT	4481	False	NA	NA	False	AATAAA	-29	NA	32405369	32466687	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_32405547_32449224_32449462_32466089
transcript_11490.nnic	chr11	+	1320	9	NNC	ENSMUSG00000020272.9	novel	5026	19	NA	NA	-26	-1081	at_least_one_novel_splicesite	TRUE	canonical	1	19	junction_2	23.5889274872767	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTAGAATTAGGCTTCAT	NA	False	NA	NA	False	NA	NA	NA	32483278	32547447	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_32483560_32505123_32505289_32524498_32524548_32527623_32527774_32537312_32537386_32538755_32538951_32539409_32539492_32546614_32546750_32547257
transcript_11492.nnic	chr11	+	534	4	NNC	ENSMUSG00000020272.9	novel	5026	19	NA	NA	26142	-1944	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	21.9696760710454	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTGCTTCTGTGCCAGCT	1667	False	NA	NA	False	NA	NA	NA	32564736	32572643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_32564811_32565780_32565907_32567848_32567963_32572423
transcript_11493.nnic	chr11	+	766	4	NNC	ENSMUSG00000020272.9	novel	5026	19	NA	NA	26142	-1712	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	21.9696760710454	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTATTGTGATCCTTGTG	1667	False	NA	NA	False	NA	NA	NA	32564736	32572875	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_32564811_32565780_32565907_32567848_32567963_32572423
transcript_11495.nnic	chr11	+	830	4	NNC	ENSMUSG00000020272.9	novel	5026	19	NA	NA	26152	-1712	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	27.0102861065105	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTATTGTGATCCTTGTG	1677	False	NA	NA	False	NA	NA	NA	32564746	32572875	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_32564885_32565780_32565907_32567848_32567963_32572423
transcript_11496.nnic	chr11	+	721	4	NNC	ENSMUSG00000020272.9	novel	5026	19	NA	NA	26154	-1712	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	32.5610537640019	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTATTGTGATCCTTGTG	1679	False	NA	NA	False	NA	NA	NA	32564748	32572875	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_32564778_32565780_32565907_32567848_32567963_32572423
transcript_11497.nnic	chr11	-	1049	4	Antisense	novelGene_ENSMUSG00000020272.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	1.63299316185545	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGATTGGGTATGGGCACTTC	NA	False	NA	NA	False	NA	NA	NA	32564742	32562173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr11_-_32562751_32563436_32563569_32563965_32564062_32564498
transcript_11500.nnic	chr11	+	638	3	NNC	ENSMUSG00000020272.9	novel	5026	19	NA	NA	-26	-38782	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_2	15	116	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTTTTAATTTTCTGTG	NA	False	NA	NA	False	NA	NA	NA	32483278	32509746	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_32483560_32505123_32505289_32509554
transcript_11501.known	chr11	+	5026	19	FSM	ENSMUSG00000020272.9	ENSMUST00000102821.4	5026	19	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_8	17.3190824607989	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGCAAGCACTGTTGTTC	NA	False	NA	1	True	AATAAA	-12	NA	32483304	32574587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_32483560_32505123_32505289_32524498_32524548_32527623_32527774_32537312_32537386_32538755_32538951_32539409_32539492_32546614_32546750_32548438_32548985_32550740_32550872_32553666_32553791_32554120_32554301_32560632_32560726_32562670_32562801_32563461_32563587_32564524_32564714_32565780_32565907_32567848_32567963_32572423
transcript_11506.known	chr11	-	1633	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	0	0	0	0	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	136462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAACTCAGTGGATAGT	NA	False	NA	NA	False	AATACA	-9	NA	33113206	33102286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
transcript_11624.known	chr11	-	1157	10	FSM	ENSMUSG00000057113.14	ENSMUST00000109354.10	1157	10	0	0	0	0	multi-exon	FALSE	canonical	3	2877	junction_1	5620.63509877489	43867	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAGGATGTATGTGACAA	NA	False	NA	-22	True	AATAAA	-15	NA	33113077	33104926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_33105221_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
transcript_11625.known	chr11	-	1192	10	FSM	ENSMUSG00000057113.14	ENSMUST00000093201.13	1192	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	6125.12875954356	7186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	-32	True	AATAAA	-21	NA	33113072	33102509	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
transcript_11626.known	chr11	-	966	10	FSM	ENSMUSG00000057113.14	ENSMUST00000101375.5	966	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	6470.30156337304	6601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTCCTGGTGTCACTGA	NA	False	NA	-7	True	ATTAAA	-11	NA	33113076	33105327	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_33105432_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
transcript_11627.known	chr11	+	447	1	FSM	ENSMUSG00000099902.2	ENSMUST00000119969.2	447	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAACGGATGATTCGTCTT	NA	False	NA	NA	False	AAGAAA	-6	NA	33122918	33123365	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_33122900_33123400
transcript_11631.known	chr11	-	5001	28	FSM	ENSMUSG00000040594.20	ENSMUST00000102815.10	5001	28	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_14	30.62978637606	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGTGGGCTCCCTTCTCT	NA	False	NA	NA	False	ATTAAA	-19	NA	33463746	33161794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_33163499_33167291_33167420_33169170_33169270_33193109_33193277_33214635_33214775_33216109_33216325_33233907_33233991_33239563_33239672_33247341_33247431_33252766_33252871_33268238_33268348_33268427_33268492_33278443_33278525_33279470_33279545_33391802_33391939_33402443_33402550_33424886_33425081_33428163_33428337_33429142_33429290_33431021_33431142_33433005_33433080_33435917_33436084_33437642_33437748_33441326_33441393_33443250_33443418_33450679_33450771_33454681_33454829_33463601
transcript_11637.known	chr11	-	537	5	FSM	ENSMUSG00000085684.3	ENSMUST00000223852.2	537	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTTGTCTTAAGGATCGAAA	NA	False	NA	NA	False	AATAAA	-25	NA	34048545	34041280	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_34041475_34041559_34041648_34044291_34044423_34046751_34046846_34048515
transcript_11639.nic	chr11	-	703	5	ISM	ENSMUSG00000020143.16	ENSMUST00000143540.8	3727	26	-2	234694	-2	-234694	5prime_fragment	FALSE	canonical	1	2	junction_1	0.82915619758885	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGGGATTTGATTTGGT	9016	False	NA	NA	False	AATAAA	-21	NA	34674721	34622005	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_34622414_34623167_34623224_34624257_34624299_34647025_34647110_34674607
transcript_11644.known	chr11	-	2505	12	FSM	ENSMUSG00000069910.3	ENSMUST00000093191.3	2505	12	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_9	17.9669117367279	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATTTGTATTTTTTAAT	NA	False	NA	-7	True	AATAAA	-15	NA	34724468	34700016	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_34700670_34704152_34704502_34709949_34710138_34710604_34710715_34711716_34711858_34713007_34713119_34713200_34713300_34713386_34713537_34714156_34714355_34716189_34716367_34721551_34721727_34724314
transcript_11650.nnic	chr11	-	1862	9	NNC	ENSMUSG00000069910.3	novel	2505	12	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	57.6974869470066	53	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATTTGTATTTTTTAAT	NA	False	NA	-7	True	AATAAA	-15	NA	34724481	34700016	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_34700670_34704152_34704285_34713007_34713119_34713200_34713300_34713386_34713537_34714156_34714355_34716189_34716367_34721551_34721727_34724314
transcript_11651.known	chr11	-	671	2	FSM	ENSMUSG00000069910.3	ENSMUST00000148387.2	671	2	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGCTTGAGCCTGAAGTC	NA	False	NA	NA	False	NA	NA	NA	34724419	34721160	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_34721727_34724314
transcript_11654.known	chr11	+	7376	7	FSM	ENSMUSG00000018846.9	ENSMUST00000018990.8	7376	7	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_4	14.5191444498481	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTCCTGCTTGTTTCA	NA	False	NA	15	True	AATAAA	-17	NA	35660310	35682112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_35660775_35666912_35667266_35668393_35668648_35669402_35669580_35672410_35672535_35674274_35674401_35676234
transcript_11656.known	chr11	-	2109	15	FSM	ENSMUSG00000018848.5	ENSMUST00000018992.4	2109	15	0	0	0	0	multi-exon	FALSE	canonical	3	825	junction_11	73.3093807511866	3647	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCAGGTGTGTTTCTTTGT	NA	False	NA	-1	True	AGTAAA	-17	NA	35725333	35699207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_35699419_35699921_35700170_35700454_35700628_35706465_35706572_35707463_35707574_35708176_35708356_35710700_35710806_35711922_35712053_35715222_35715344_35716813_35716936_35717303_35717405_35718184_35718294_35719451_35719641_35723998_35724134_35725263
transcript_11662.nnic	chr11	-	1454	4	NNC	ENSMUSG00000018849.7	novel	4531	23	NA	NA	11151	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	143.815468183672	202	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCTTGTCATTTGTCCC	NA	False	NA	NA	False	AATAAA	-18	NA	35733230	35729226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_35730072_35731136_35731259_35732580_35732815_35732977
transcript_11664.nnic	chr11	-	992	4	NNC	ENSMUSG00000018849.7	novel	4531	23	NA	NA	11251	-362	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	143.815468183672	41	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTGTATTTGAGGGGCGA	NA	False	NA	NA	False	AATAAA	-9	NA	35733130	35729588	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_35730072_35731136_35731259_35732580_35732815_35732977
transcript_11667.known	chr11	-	2053	7	FSM	ENSMUSG00000042032.14	ENSMUST00000101347.10	2053	7	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_6	83.011378068846	1507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGGCTTTATTTTGTA	NA	False	NA	-12	True	AATAAA	-18	NA	40586030	40570140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576169_40578427_40578623_40585629
transcript_11673.nic	chr11	-	1825	7	NIC	ENSMUSG00000042032.14	novel	2053	7	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_5	204.398032171436	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGGCTTTATTTTGTA	NA	False	NA	-12	True	AATAAA	-18	NA	40585830	40570140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576141_40578427_40578623_40585629
transcript_11674.known	chr11	-	1949	7	FSM	ENSMUSG00000042032.14	ENSMUST00000040167.11	1949	7	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_6	119.767367100652	791	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGGCTTTATTTTGTA	NA	False	NA	-12	True	AATAAA	-18	NA	40583601	40570140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576169_40578427_40578623_40583304
transcript_1169.nnic	chr1	-	845	4	Intergenic	novelGene_1	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_3	28.3901391331568	275	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGCTTTGTGAGATCTTT	NA	False	NA	-6	True	ATTAAA	-16	NA	21326789	21323508	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr1_-_21323669_21324392_21324563_21326110_21326225_21326388
transcript_11691.nnic	chr11	-	3699	19	NNC	ENSMUSG00000020330.17	novel	3892	18	NA	NA	-48	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.337481440185	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACCCAATCAGTGATTAA	NA	False	NA	-8	True	AATAAA	-17	NA	40624297	40592221	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_40592459_40592802_40593686_40594608_40594763_40596718_40596896_40598176_40598277_40598391_40598545_40598841_40598989_40600631_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
transcript_11694.nnic	chr11	-	3676	19	NNC	ENSMUSG00000020330.17	novel	3892	18	NA	NA	-48	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.337481440185	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACCCAATCAGTGATTAA	NA	False	NA	-8	True	AATAAA	-17	NA	40624297	40592221	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_40592459_40592802_40593686_40594608_40594763_40596718_40596896_40598176_40598277_40598391_40598545_40598841_40599069_40600734_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
transcript_11696.known	chr11	-	3892	18	FSM	ENSMUSG00000020330.17	ENSMUST00000020579.9	3892	18	0	0	0	0	multi-exon	TRUE	canonical	3	534	junction_10	59.4855104336938	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACCCAATCAGTGATTAA	NA	False	NA	-8	True	AATAAA	-17	NA	40624249	40592221	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_40593686_40594608_40594763_40596718_40596896_40598176_40598277_40598391_40598545_40598841_40598989_40600734_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
transcript_117.known	SIRV1	+	464	3	FSM	SIRV1B	SIRV109	464	3	0	0	0	0	multi-exon	FALSE	canonical	3	3494	junction_2	198.5	8502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTTCGGCTAATCATGT	NA	False	NA	NA	False	NA	NA	NA	10711	11643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV1_+_10792_10882_11058_11434
transcript_1170.nnic	chr1	-	880	4	Intergenic	novelGene_2	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_2	29.9369708257569	302	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGCTTTGTGAGATCTTT	NA	False	NA	-6	True	ATTAAA	-16	NA	21326789	21323508	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr1_-_21323669_21324392_21324598_21326110_21326225_21326388
transcript_11704.nic	chr11	-	2045	14	ISM	ENSMUSG00000020330.17	ENSMUST00000020579.9	3892	18	-48	6170	-48	-6170	5prime_fragment	FALSE	canonical	3	534	junction_6	64.2459217502439	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTCAGGCTAGACCTTG	NA	False	NA	NA	False	AAAAAG	-1	NA	40624297	40598391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_40598545_40598841_40598989_40600734_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
transcript_11706.nic	chr11	-	1939	14	ISM	ENSMUSG00000020330.17	ENSMUST00000020579.9	3892	18	-48	6276	-48	-6276	5prime_fragment	FALSE	canonical	3	534	junction_6	64.2459217502439	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGAAATCACATCTTCA	NA	False	NA	NA	False	AAGAAA	-1	NA	40624297	40598497	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_40598545_40598841_40598989_40600734_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
transcript_11710.nic	chr11	-	1460	10	ISM	ENSMUSG00000020330.17	ENSMUST00000020579.9	3892	18	-48	13017	-48	6491	5prime_fragment	FALSE	canonical	3	534	junction_2	71.1602260942008	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCAGTGTGATGATTTTAC	NA	False	NA	NA	False	NA	NA	NA	40624297	40605238	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
transcript_11715.known	chr11	-	1443	7	FSM	ENSMUSG00000020330.17	ENSMUST00000156399.8	1443	7	0	0	0	0	multi-exon	FALSE	canonical	3	653	junction_3	43.8203402796261	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTCTGTTTTCCATAACT	NA	False	NA	NA	False	NA	NA	NA	40624243	40611729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
transcript_11719.known	chr11	-	1080	5	FSM	ENSMUSG00000020330.17	ENSMUST00000127705.8	1080	5	0	0	0	0	multi-exon	FALSE	canonical	3	653	junction_1	36.1939221417077	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAACTAAG	NA	False	NA	NA	False	NA	NA	NA	40624243	40613663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
transcript_11722.nic	chr11	-	563	3	ISM	ENSMUSG00000020330.17	ENSMUST00000152749.2	547	4	-79	3569	-48	-3569	5prime_fragment	FALSE	canonical	3	655	junction_1	43	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGCTAAGTGTGTAAATCAA	NA	False	NA	NA	False	NA	NA	NA	40624297	40619026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_40619334_40619948_40620048_40624140
transcript_11727.known	chr11	+	577	4	FSM	ENSMUSG00000020328.11	ENSMUST00000141839.2	577	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	492.487788906712	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCATATTTAATTGTATTT	NA	False	NA	NA	False	NA	NA	NA	40625031	40630310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_40625083_40626844_40626894_40627319_40627472_40629985
transcript_11734.known	chr11	+	1577	4	FSM	ENSMUSG00000020328.11	ENSMUST00000020578.11	1577	4	0	0	0	0	multi-exon	FALSE	canonical	3	1122	junction_2	37.9326889224701	6625	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTACTTTTTCTTTTCT	NA	False	NA	29	True	AATAAA	-21	NA	40624493	40630873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_40624982_40626844_40626894_40627319_40627472_40629985
transcript_11735.known	chr11	+	806	2	FSM	ENSMUSG00000020328.11	ENSMUST00000127057.2	806	2	0	0	0	0	multi-exon	FALSE	canonical	3	1212	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTACCTAATAGCCTTTGG	NA	False	NA	NA	False	NA	NA	NA	40624570	40627239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_40624982_40626844
transcript_11736.known	chr11	+	727	4	FSM	ENSMUSG00000020328.11	ENSMUST00000127382.2	727	4	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	523.696052644619	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTTCATGGAAAAATATTT	NA	False	NA	-52	True	AAAAAG	-3	NA	40624772	40630377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_40624982_40626844_40626894_40627394_40627472_40629985
transcript_11739.known	chr11	-	3512	6	FSM	ENSMUSG00000020326.8	ENSMUST00000020576.8	3512	6	0	0	0	0	multi-exon	FALSE	canonical	3	618	junction_3	51.9422756528822	678	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCCTTGTTTTGGTTTCT	NA	False	NA	-5	True	AATAAA	-16	NA	40646138	40639378	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_40641887_40642087_40642187_40642266_40642346_40642930_40643185_40644634_40644896_40645827
transcript_11752.nic	chr11	-	1196	5	ISM	ENSMUSG00000020326.8	ENSMUST00000020576.8	3512	6	-21	2538	-21	-2000	5prime_fragment	FALSE	canonical	3	618	junction_2	50.9043220168975	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGGCTTTTTTTTTTAAT	NA	False	NA	NA	False	TATAAA	-5	NA	40646159	40641916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_40642187_40642266_40642346_40642930_40643185_40644634_40644896_40645827
transcript_11761.nnic	chr11	+	1279	6	NNC	ENSMUSG00000007653.13	novel	3989	10	NA	NA	-433	37349	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_5	1.95959179422654	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAAGTTACTTTATTGCA	NA	False	NA	NA	False	ATTAAA	-4	NA	42311672	42459798	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_42312254_42312378_42312471_42313407_42313476_42378022_42378244_42420238_42420322_42459564
transcript_1177.nnic	chr1	+	927	3	Genic_Genomic	ENSMUSG00000025934.16	novel	2792	1	NA	NA	-236	277	multi-exon	FALSE	non_canonical	0	0	junction_1	0	181	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGTGGGGTATGCCAGCCA	NA	False	NA	NA	False	NA	NA	NA	21323508	21326813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr1_+_21323669_21324392_21324563_21326216
transcript_11776.known	chr11	-	696	6	FSM	ENSMUSG00000020415.17	ENSMUST00000118368.8	696	6	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_5	3753.79296179211	12379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGTTCAGATTGTGAATA	NA	False	NA	-35	True	AATAAA	-11	NA	43317044	43311099	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_43311236_43311933_43312093_43313719_43313814_43315545_43315725_43316409_43316509_43317015
transcript_11777.known	chr11	-	700	6	FSM	ENSMUSG00000020415.17	ENSMUST00000101340.11	700	6	0	0	0	0	multi-exon	FALSE	canonical	3	4089	junction_5	2240.31940579909	17245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAGATTGTGAATACTTA	NA	False	NA	-31	True	AATAAA	-15	NA	43317029	43311095	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_43311236_43311933_43312093_43313719_43313814_43315545_43315725_43316409_43316509_43317000
transcript_11778.known	chr11	-	476	3	FSM	ENSMUSG00000020415.17	ENSMUST00000140434.8	476	3	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_1	5041.5	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATTGTGAATACTTAACCA	NA	False	NA	-27	True	AATAAA	-19	NA	43313813	43311091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_43311236_43311854_43312093_43313719
transcript_11780.nic	chr11	+	2065	17	NIC	ENSMUSG00000020409.11	novel	3625	16	NA	NA	-16	926	combination_of_known_junctions	FALSE	canonical	3	72	junction_1	62.6749738232893	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTCTCAACAGTCAAGAA	NA	False	NA	14	True	AATAAA	-19	NA	43324554	43337138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_43324647_43327180_43327260_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010_43336083_43336185_43336300_43336838
transcript_11782.nic	chr11	+	2789	17	NIC	ENSMUSG00000020409.11	novel	3625	16	NA	NA	-16	-946	combination_of_known_junctions	FALSE	canonical	3	72	junction_1	62.6749738232893	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTGGATTTTCGTACACTT	NA	False	NA	14	True	AATAAA	-25	NA	43324554	43337862	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_43324647_43327180_43327260_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010_43336083_43336185_43336300_43336838
transcript_11787.known	chr11	+	3625	16	FSM	ENSMUSG00000020409.11	ENSMUST00000020681.10	3625	16	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_1	28.1705914425349	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCATGAGTTGTTTGAAGT	NA	False	NA	NA	False	AATAAA	-20	NA	43324585	43338808	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_43324647_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010_43336083_43336185_43336300_43336838
transcript_1179.nnic	chr1	+	982	3	Genic_Genomic	ENSMUSG00000025934.16	novel	2792	1	NA	NA	-236	191	multi-exon	FALSE	non_canonical	0	0	junction_1	0	318	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGCGAAGAGGAAAGGGAGG	NA	False	NA	NA	False	NA	NA	NA	21323508	21326727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr1_+_21323669_21324392_21324598_21326110
transcript_11790.known	chr11	+	1662	16	FSM	ENSMUSG00000020409.11	ENSMUST00000151880.8	1662	16	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	64.5679659136187	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAGAAGAAAAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	43324570	43336212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_43324647_43327180_43327260_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010_43336083_43336185
transcript_11796.known	chr11	+	1211	4	FSM	ENSMUSG00000046491.11	ENSMUST00000057679.10	1211	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAATGGTCTTAGTATCTGT	NA	False	NA	NA	False	ATTAAA	-37	NA	43365132	43382352	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_43365215_43371722_43371797_43376647_43376901_43381550
transcript_118.known	SIRV1	+	702	3	FSM	SIRV1B	SIRV108	702	3	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	13	4763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAAAGACATAGGGCGTGG	NA	False	NA	NA	False	NA	NA	NA	10582	11606	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV1_+_10792_10897_11188_11403
transcript_1180.nnic	chr1	+	909	3	Genic_Genomic	ENSMUSG00000025934.16	novel	2792	1	NA	NA	-236	224	multi-exon	FALSE	non_canonical	0	0	junction_1	0	274	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCTCTGGGGGTAGGGGA	NA	False	NA	NA	False	NA	NA	NA	21323508	21326760	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr1_+_21323669_21324392_21324598_21326216
transcript_11800.known	chr11	+	1506	2	FSM	ENSMUSG00000044950.8	ENSMUST00000129229.2	1506	2	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAGAAAAAAAGCCAAA	1513	False	NA	95	True	NA	NA	NA	43596069	43612318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_43596305_43611047
transcript_11804.known	chr11	-	1438	8	FSM	ENSMUSG00000041278.11	ENSMUST00000048578.3	1438	8	0	0	0	0	multi-exon	FALSE	canonical	3	649	junction_5	59.12318513416	2712	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTGGGGACTATGTTGT	NA	False	NA	-10	True	AATAAA	-12	NA	43638809	43620835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_43621435_43627245_43627301_43628693_43628843_43629623_43629661_43630543_43630657_43632587_43632649_43635911_43636275_43638748
transcript_11806.known	chr11	-	2088	11	FSM	ENSMUSG00000041231.16	ENSMUST00000102795.4	2088	11	0	0	0	0	multi-exon	FALSE	canonical	2	61	junction_9	50.7897627480184	551	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTTATCTGTTTTATAAT	NA	False	NA	NA	False	AATAAA	-18	NA	44361325	44345397	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_44346443_44347190_44347319_44349031_44349149_44351547_44351647_44352145_44352184_44354484_44354584_44356191_44356308_44356384_44356471_44356822_44356915_44357641_44357839_44361254
transcript_11807.known	chr11	-	6453	4	FSM	ENSMUSG00000044847.14	ENSMUST00000129820.8	6453	4	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_3	23.3666428910958	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCTTGCTGCTTGGTCTC	NA	False	NA	-5	True	AATAAA	-15	NA	45835762	45819095	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_45824851_45825247_45825332_45828185_45828326_45835288
transcript_11813.known	chr11	-	2250	6	FSM	ENSMUSG00000011254.17	ENSMUST00000011398.13	2250	6	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_3	12.8	423	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTTCCTACAGAATGAGT	6301	False	NA	NA	False	AATAAA	-26	NA	45846321	45837669	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_45839156_45841022_45841131_45842369_45842459_45843561_45843732_45844882_45845060_45846101
transcript_11814.known	chr11	+	2997	5	FSM	ENSMUSG00000040489.6	ENSMUST00000049038.4	2997	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.433012701892219	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTTGTTAAATGTTTTC	NA	False	NA	NA	False	AATAAA	-11	NA	45871136	45908821	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_45872201_45874145_45874386_45875543_45875724_45882445_45882939_45907801
transcript_11816.known	chr11	-	784	2	FSM	ENSMUSG00000069899.4	ENSMUST00000154156.2	784	2	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	0	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGAGAC	1787	False	NA	NA	False	AATAAA	-16	NA	45943148	45942194	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_45942889_45943058
transcript_11817.known	chr11	-	958	1	FSM	ENSMUSG00000069899.4	ENSMUST00000093169.3	958	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2442	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAGACAGAGAGAGAGAGAA	1797	False	NA	NA	False	AATAAA	-30	NA	45943138	45942180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_45942200_45943100
transcript_1182.known	chr1	-	1124	1	FSM	ENSMUSG00000082935.4	ENSMUST00000119064.2	1124	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTTATGAAAATGATTTT	NA	False	NA	NA	False	NA	NA	NA	21583280	21582156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_21582200_21583300
transcript_11824.known	chr11	+	6383	23	FSM	ENSMUSG00000011256.17	ENSMUST00000011400.8	6383	23	0	0	0	0	multi-exon	TRUE	canonical	3	430	junction_20	39.4256282802095	144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTCTGTTTGGATGGCT	NA	False	NA	15	True	ATTAAA	-20	NA	45946818	46038170	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_45947038_45951749_45951836_45955838_45955910_45984689_45984769_45990679_45990757_46003583_46003777_46004449_46004516_46009246_46009319_46012246_46012414_46013919_46014005_46015834_46015975_46018072_46018251_46019612_46019703_46022449_46022646_46025254_46025364_46027074_46027289_46028190_46028269_46028366_46028476_46029663_46029803_46030519_46030605_46030832_46031058_46033745_46033899_46034618
transcript_11830.known	chr11	+	778	3	FSM	ENSMUSG00000020397.16	ENSMUST00000109231.2	778	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	128	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCCCCATTCAGAAGCAG	NA	False	NA	NA	False	NA	NA	NA	46327797	46331927	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_46328019_46330632_46330652_46331389
transcript_11831.known	chr11	+	2547	3	FSM	ENSMUSG00000020397.16	ENSMUST00000109232.4	2547	3	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_1	137	606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATCCAGGAATTTTGTGAG	NA	False	NA	NA	False	NA	NA	NA	46327800	46333548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_46328019_46330632_46330803_46331389
transcript_1184.known	chr1	+	347	1	FSM	ENSMUSG00000100775.2	ENSMUST00000190910.2	347	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGAATTATTTTCTTGT	NA	False	NA	NA	False	AATAAA	-23	NA	23332809	23333156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_23332800_23333200
transcript_11840.known	chr11	+	381	2	FSM	ENSMUSG00000020397.16	ENSMUST00000152119.2	381	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACATCTTAATAAGAAGTCC	NA	False	NA	NA	False	NA	NA	NA	46327751	46331685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_46327837_46331389
transcript_11842.known	chr11	+	702	2	FSM	ENSMUSG00000020397.16	ENSMUST00000128940.2	702	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACGAGTCATTGAAATGAT	NA	False	NA	NA	False	NA	NA	NA	46327804	46331877	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_46328019_46331389
transcript_11844.known	chr11	+	1193	3	FSM	ENSMUSG00000020397.16	ENSMUST00000020665.13	1193	3	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	179.5	799	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGAATTGTCATTCTTGGA	NA	False	NA	12	True	AATAAA	-14	NA	46327778	46332354	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_46327837_46330632_46330803_46331389
transcript_11847.nnic	chr11	+	2055	4	NNC	ENSMUSG00000086981.4	novel	327	4	NA	NA	-1676	408	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.471404520791032	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCAACTTGTAACGTAGAA	64	False	NA	NA	False	NA	NA	NA	46437563	46448302	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_46438008_46439230_46439289_46445106_46445141_46446783
transcript_11849.nnic	chr11	+	845	2	Genic_Genomic	ENSMUSG00000080776.2	novel	813	1	NA	NA	-25	73	multi-exon	TRUE	canonical	0	0	junction_1	0	416	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATATTTCTTGCAGCCATA	NA	False	NA	NA	False	AATAAA	-32	NA	46618619	46619530	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr11_+_46618675_46618740
transcript_1185.known	chr1	-	2926	6	FSM	ENSMUSG00000026158.12	ENSMUST00000186064.7	2926	6	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_5	8.81816307401944	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	23419882	23408804	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_23409530_23414810_23414957_23415068_23415136_23415251_23415331_23417806_23417886_23418052
transcript_11852.known	chr11	+	813	1	FSM	ENSMUSG00000080776.2	ENSMUST00000119853.2	813	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2277	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCACCCATTGTATTTT	NA	False	NA	NA	False	GATAAA	-26	NA	46618644	46619457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_46618600_46619500
transcript_1186.known	chr1	-	2289	10	FSM	ENSMUSG00000026155.14	ENSMUST00000027339.14	2289	10	0	0	0	0	multi-exon	FALSE	canonical	3	380	junction_6	35.0269737329517	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTTTATTTGTGGGTTTT	NA	False	NA	-2	True	ATTAAA	-17	NA	23961398	23884705	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_23885645_23887344_23887653_23888383_23888550_23892503_23892632_23898103_23898195_23905297_23905379_23915454_23915531_23916789_23916876_23930940_23931075_23961118
transcript_11872.known	chr11	-	3432	6	FSM	ENSMUSG00000040365.15	ENSMUST00000047145.14	3432	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_5	5.01996015920445	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTGGACTCTTTTA	NA	False	NA	-25	True	AATAAA	-18	NA	48708180	48697230	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_48698674_48698951_48699080_48699291_48699315_48699876_48700108_48703126_48703223_48706669
transcript_1188.known	chr1	-	683	3	FSM	ENSMUSG00000026154.5	ENSMUST00000027338.4	683	3	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_1	0.5	2563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTATTATTTTATTTTTA	NA	False	NA	-1	True	AATAAA	-23	NA	24044737	24035019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_24035442_24042237_24042388_24044626
transcript_11882.known	chr11	+	1447	8	FSM	ENSMUSG00000020372.16	ENSMUST00000020640.8	1447	8	0	0	0	0	multi-exon	FALSE	canonical	1	1907	junction_2	1651.73542626153	30681	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACCCACCTTTCCCCAAG	NA	False	NA	NA	False	AATAAA	-23	NA	48691186	48697261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_48691400_48692489_48692662_48693099_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
transcript_11883.known	chr11	+	1542	7	FSM	ENSMUSG00000020372.16	ENSMUST00000139959.8	1542	7	0	0	0	0	multi-exon	FALSE	canonical	3	5433	junction_6	484.72730019626	5506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTTCTATATGTGAGTC	NA	False	NA	23	True	AATAAA	-15	NA	48691183	48696915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_48691400_48692489_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
transcript_11884.known	chr11	+	4456	2	FSM	ENSMUSG00000020372.16	ENSMUST00000142269.2	4456	2	0	0	0	0	multi-exon	FALSE	canonical	3	6843	junction_1	0	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	48691158	48695801	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_48694796_48694982
transcript_11885.known	chr11	+	766	3	FSM	ENSMUSG00000020372.16	ENSMUST00000136703.2	766	3	0	0	0	0	multi-exon	FALSE	canonical	1	1907	junction_2	2329	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCATGGGACTTACAGGC	NA	False	NA	NA	False	NA	NA	NA	48691200	48693494	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_48691400_48692489_48692662_48693099
transcript_11888.known	chr11	-	1310	1	FSM	ENSMUSG00000078154.4	ENSMUST00000104959.2	1310	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	295	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGAGTGTAAGAAGGTTA	NA	False	NA	NA	False	AATAAA	-27	NA	48717482	48716172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_48716200_48717500
transcript_11889.known	chr11	-	837	1	FSM	ENSMUSG00000078153.4	ENSMUST00000104958.2	837	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1329	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAAAGAAATAC	1535	False	NA	NA	False	AATAAA	-22	NA	48837017	48836180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_48836200_48837000
transcript_1189.known	chr1	-	426	2	FSM	ENSMUSG00000026154.5	ENSMUST00000155767.3	426	2	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATGCCTCCGTGCATGAA	NA	False	NA	NA	False	AAAAAG	-13	NA	24044711	24042046	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_24042388_24044626
transcript_11891.known	chr11	+	3872	4	FSM	ENSMUSG00000046311.14	ENSMUST00000109198.8	3872	4	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	17.4547032821147	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGGATGGCTTTTTATT	1166	False	NA	NA	False	AATAAA	-12	NA	49094118	49109380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_49094366_49103521_49103604_49104416_49104470_49105890
transcript_11894.known	chr11	+	1457	3	FSM	ENSMUSG00000046311.14	ENSMUST00000157023.8	1457	3	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	20.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATTTAAAGATTATT	1359	False	NA	NA	False	NA	NA	NA	49094311	49105737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_49094366_49103521_49103604_49104416
transcript_11895.known	chr11	+	3151	4	FSM	ENSMUSG00000020346.17	ENSMUST00000167400.8	3151	4	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_1	35.4432253360529	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATAAGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-19	NA	49135017	49153849	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_49135167_49136019_49136445_49142376_49142502_49151397
transcript_11897.known	chr11	+	2976	3	FSM	ENSMUSG00000020346.17	ENSMUST00000081794.7	2976	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	11	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTGTGTGTGTGTGTCCT	NA	False	NA	NA	False	AATAAA	-24	NA	49135072	49153854	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_49135167_49136019_49136445_49151397
transcript_11898.known	chr11	+	2729	3	FSM	ENSMUSG00000020346.17	ENSMUST00000101293.11	2729	3	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	25.5	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGTGTGTCCTAGG	NA	False	NA	NA	False	AATAAA	-27	NA	49141338	49153857	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_49141483_49142376_49142502_49151397
transcript_11899.known	chr11	+	493	3	FSM	ENSMUSG00000064057.13	ENSMUST00000043873.10	493	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTTGATGTCTTCTTGC	NA	False	NA	NA	False	AATAAA	-16	NA	49554436	49555945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_49554543_49555196_49555433_49555794
transcript_11901.known	chr11	-	5736	12	FSM	ENSMUSG00000020362.14	ENSMUST00000145353.8	5736	12	0	0	0	0	multi-exon	TRUE	canonical	3	61	junction_7	45.9026998251701	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTAAAAGTGTAGTTTG	NA	False	NA	-10	True	AATAAA	-19	NA	49603550	49562329	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_49566233_49568126_49568330_49570747_49570979_49571967_49572123_49572865_49573021_49573951_49574110_49575913_49575983_49576074_49576180_49577673_49577760_49579991_49580179_49593367_49593482_49603180
transcript_11904.known	chr11	-	2498	12	FSM	ENSMUSG00000020362.14	ENSMUST00000020624.7	2498	12	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_7	24.0849049121664	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGCAAA	NA	False	NA	NA	False	NA	NA	NA	49603537	49565539	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_49566233_49568126_49568330_49570747_49570979_49571967_49572123_49572865_49573021_49573951_49574110_49575913_49575983_49576089_49576180_49577673_49577760_49579991_49580179_49593367_49593482_49603180
transcript_11911.known	chr11	-	348	1	FSM	ENSMUSG00000083061.2	ENSMUST00000118307.2	348	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10212	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGAAAGTTTTCCTTTAA	NA	False	NA	NA	False	NA	NA	NA	49569884	49569536	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_49569500_49569900
transcript_11912.known	chr11	+	2947	19	FSM	ENSMUSG00000020363.7	ENSMUST00000020629.5	2947	19	0	0	0	0	multi-exon	FALSE	canonical	2	320	junction_10	53.5808204583287	374	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCGACTTGTTTGAATT	NA	False	NA	27	True	AATAAA	-17	NA	49685013	49729440	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_49685071_49695778_49695887_49698521_49698621_49699860_49699987_49701790_49701850_49702496_49702632_49706106_49706169_49709406_49709487_49709963_49710082_49714038_49714203_49714560_49714657_49714767_49714866_49715158_49715280_49717570_49717729_49717957_49718073_49720566_49720695_49723687_49723856_49726438_49726601_49728547
transcript_1192.known	chr1	-	345	1	FSM	ENSMUSG00000101939.2	ENSMUST00000188299.2	345	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	308	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATGGTAATTAGTTTAAA	NA	False	NA	NA	False	AAAAAG	-18	NA	24652200	24651855	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_24651900_24652200
transcript_11920.known	chr11	+	4677	12	FSM	ENSMUSG00000020366.19	ENSMUST00000178543.8	4677	12	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_7	121.043192891854	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTACTTGTGGTTTTG	NA	False	NA	14	True	NA	NA	NA	49737577	49777248	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_49737803_49745039_49745210_49754370_49754501_49757809_49757869_49759998_49760138_49763560_49763727_49764662_49764735_49769057_49769241_49770528_49770654_49772045_49772110_49772957_49773027_49773973
transcript_11921.known	chr11	+	4675	12	FSM	ENSMUSG00000020366.19	ENSMUST00000020634.14	4675	12	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_7	40.7615521322656	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTACTTGTGGTTTTG	NA	False	NA	14	True	NA	NA	NA	49737579	49777248	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_49737803_49745039_49745210_49754370_49754501_49757809_49757869_49759998_49760138_49763560_49763727_49765090_49765163_49769057_49769241_49770528_49770654_49772045_49772110_49772957_49773027_49773973
transcript_11924.known	chr11	+	1245	6	FSM	ENSMUSG00000020366.19	ENSMUST00000148274.8	1245	6	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_5	26.8029849084015	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATTCATGTGATTATTTA	NA	False	NA	NA	False	AATAAA	-21	NA	49737719	49764224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_49737803_49745039_49745210_49754370_49754501_49757809_49757869_49759998_49760138_49763560
transcript_11925.nnic	chr11	+	2027	12	NNC	ENSMUSG00000020374.17	novel	2120	13	NA	NA	-5521	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	2.42916167561589	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGAGTGTCCATATGTCT	2147	False	NA	NA	False	AGTAAA	-25	NA	49849090	49871049	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_49849314_49849426_49849565_49851224_49851426_49851980_49852056_49858163_49858254_49860322_49860426_49860870_49860951_49861032_49861129_49862195_49862292_49866453_49866578_49869234_49869308_49870321
transcript_11928.known	chr11	+	1502	9	FSM	ENSMUSG00000020376.18	ENSMUST00000102776.5	1502	9	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_8	44.3931300991494	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCGCCAGCGTGTGTTT	NA	False	NA	24	True	NA	NA	NA	49916174	49995580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_49916475_49943602_49943798_49961997_49962249_49976567_49976640_49978205_49978289_49984549_49984647_49986602_49986808_49990072_49990167_49995375
transcript_11929.known	chr11	+	1415	8	FSM	ENSMUSG00000020376.18	ENSMUST00000054684.14	1415	8	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_7	82.1161447249552	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCAGCGTGTGTTTCAGAG	NA	False	NA	29	True	NA	NA	NA	49916172	49995585	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_49916475_49943602_49943798_49961997_49962249_49976567_49976640_49978205_49978289_49984549_49984647_49986602_49986808_49995375
transcript_1193.known	chr1	-	783	1	FSM	ENSMUSG00000101111.2	ENSMUST00000190277.2	783	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	489	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTCCCTTAGTATAATTAA	NA	False	NA	NA	False	NA	NA	NA	24653052	24652269	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_24652300_24653100
transcript_11931.known	chr11	+	4407	21	FSM	ENSMUSG00000036644.16	ENSMUST00000093138.13	4407	21	0	0	0	0	multi-exon	TRUE	canonical	3	113	junction_18	14.0538251020852	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACACTGTGTGCAGTGCTT	NA	False	NA	7	True	AATAAA	-20	NA	50022222	50062857	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_50022384_50026651_50026763_50031209_50031329_50035853_50036083_50036929_50037189_50038847_50039056_50040528_50040742_50042145_50042308_50042748_50042900_50043450_50043666_50045912_50046031_50047571_50047858_50049243_50049374_50049488_50049588_50050469_50050539_50052281_50052523_50052872_50052939_50054651_50054724_50058995_50059053_50059522_50059630_50061523
transcript_11937.nic	chr11	+	620	3	ISM	ENSMUSG00000036644.16	ENSMUST00000093138.13	4407	21	-28	31328	-28	134	5prime_fragment	FALSE	canonical	3	150	junction_2	1.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTGCTGTGGTGCGTGTT	NA	False	NA	NA	False	NA	NA	NA	50022194	50031529	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_50022384_50026651_50026763_50031209
transcript_1194.known	chr1	-	678	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	488	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGACCCACCAAACTCAT	NA	False	NA	NA	False	AATACA	-1	NA	24653732	24653054	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_24653100_24653700
transcript_11944.known	chr11	-	2037	8	FSM	ENSMUSG00000015837.16	ENSMUST00000102774.11	2037	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	263.494104027287	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGTGATCCGTACGAGT	NA	False	NA	-14	True	AATAAA	-22	NA	50101654	50090978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_50091775_50093225_50093422_50093640_50093862_50096849_50096931_50097986_50098129_50098233_50098464_50098647_50098744_50101379
transcript_11946.known	chr11	-	2673	8	FSM	ENSMUSG00000015837.16	ENSMUST00000015981.12	2673	8	0	0	0	0	multi-exon	TRUE	canonical	3	390	junction_1	128.516496201532	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCATTGAGTGAGCCATCT	NA	False	NA	NA	False	TATAAA	-11	NA	50101618	50090192	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_50091775_50093339_50093422_50093640_50093862_50096849_50096931_50097986_50098129_50098233_50098464_50098647_50098744_50101379
transcript_11948.known	chr11	+	1142	7	FSM	ENSMUSG00000020381.11	ENSMUST00000020647.10	1142	7	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_2	8.63616427202108	746	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTCTTGCTGCTACACTC	NA	False	NA	7	True	AATAAA	-17	NA	50065675	50090942	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_50065779_50067653_50067714_50073318_50073408_50085034_50085111_50087770_50087920_50088445_50088531_50090362
transcript_1195.known	chr1	-	681	1	FSM	ENSMUSG00000102070.2	ENSMUST00000188231.2	681	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	631	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTTCACTATGAAGCTAA	NA	False	NA	NA	False	ACTAAA	-32	NA	24654646	24653965	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_24654000_24654600
transcript_11951.nic	chr11	+	445	3	NIC	ENSMUSG00000020381.11	novel	471	6	NA	NA	-57	-448	combination_of_known_junctions	FALSE	canonical	3	5	junction_2	90.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGTTGTTGTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	50065618	50068727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_50065779_50067653_50067714_50068502
transcript_11953.known	chr11	+	2429	15	FSM	ENSMUSG00000036620.15	ENSMUST00000041725.14	2429	15	0	0	0	0	multi-exon	TRUE	canonical	3	193	junction_14	11.6647471695966	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTCTCATAGGTGAAT	NA	False	NA	13	True	AATAAA	-13	NA	50116161	50125930	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_50116567_50121506_50121693_50121787_50121929_50122017_50122152_50122565_50122613_50122850_50122965_50123133_50123210_50123390_50123506_50123771_50123903_50124102_50124211_50124290_50124485_50124909_50124989_50125070_50125159_50125236_50125350_50125432
transcript_11954.nnic	chr11	-	644	5	NNC	ENSMUSG00000020377.16	novel	649	5	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	1.22474487139159	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCTGGGTCTGAGAGGGT	NA	False	NA	NA	False	ATTAAA	-25	NA	50128489	50127287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_50127540_50127843_50127926_50128020_50128092_50128167_50128268_50128350
transcript_11955.known	chr11	-	649	5	FSM	ENSMUSG00000020377.16	ENSMUST00000102772.4	649	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	0.82915619758885	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGTCTGCATTCTCTGGG	NA	False	NA	NA	False	ATTAAA	-14	NA	50129359	50127298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_50127540_50127843_50127926_50128020_50128092_50128167_50128268_50129204
transcript_11958.known	chr11	-	622	4	FSM	ENSMUSG00000020377.16	ENSMUST00000221391.2	622	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	0.471404520791032	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCTGGGTCTGAGAGGGT	NA	False	NA	NA	False	ATTAAA	-25	NA	50128384	50127287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_50127540_50127843_50127926_50128020_50128092_50128167
transcript_11959.known	chr11	-	593	4	FSM	ENSMUSG00000020377.16	ENSMUST00000221081.2	593	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.88561808316413	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCACGACGGTTCCGTCT	NA	False	NA	NA	False	ATTAAA	-2	NA	50128461	50127310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_50127540_50127843_50127926_50128020_50128092_50128250
transcript_1196.known	chr1	+	4453	16	FSM	ENSMUSG00000073725.9	ENSMUST00000191471.7	4453	16	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_9	21.4185796810983	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCGACTAATGAACAGCTT	NA	False	NA	NA	False	CATAAA	-22	NA	24717710	24804529	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_24717898_24724477_24724655_24732021_24732083_24743901_24744000_24745057_24745126_24750592_24750682_24753989_24754064_24767626_24767753_24770827_24770981_24782963_24783029_24783336_24783440_24783946_24784052_24785885_24786036_24787880_24787960_24801272_24801365_24801703
transcript_11962.known	chr11	+	1235	3	FSM	ENSMUSG00000097887.3	ENSMUST00000180443.3	1235	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTTTGAGTGTTGTACC	8238	False	NA	NA	False	AATAAA	-22	NA	50127838	50179666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_50128207_50175242_50175422_50178978
transcript_11966.known	chr11	-	3779	15	FSM	ENSMUSG00000020368.16	ENSMUST00000020637.9	3779	15	0	0	0	0	multi-exon	FALSE	canonical	3	3893	junction_7	208.647160908319	1336	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATGTCTGCAGGTTTCTC	8136	False	NA	-54	True	AATAAA	-22	NA	50216500	50185293	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216319
transcript_11993.known	chr11	+	2225	14	FSM	ENSMUSG00000007850.17	ENSMUST00000069304.14	2225	14	0	0	0	0	multi-exon	TRUE	canonical	3	130	junction_1	115.462537790991	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTCTGTCTGTGCTTTAG	NA	False	NA	NA	False	AATAAA	-18	NA	50268545	50277354	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_50268630_50269117_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
transcript_11997.nnic	chr11	+	2205	14	NNC	ENSMUSG00000007850.17	novel	2225	14	NA	NA	27	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	133.201631207028	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTGTCTGTGCTTTAGT	NA	False	NA	NA	False	AATAAA	-19	NA	50268622	50277355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_50268686_50269117_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
transcript_11999.known	chr11	+	2126	13	FSM	ENSMUSG00000007850.17	ENSMUST00000077817.8	2126	13	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_12	133.956356906104	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTGTCTGTGCTTTAGT	NA	False	NA	NA	False	AATAAA	-19	NA	50268595	50277355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_50268630_50269117_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50276603
transcript_12.known	ERCC-00028	+	1120	1	FSM	ERCC-00028A	DQ459419	1120	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1120	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00028_+_0_1100
transcript_1200.known	chr1	+	688	6	FSM	ENSMUSG00000073725.9	ENSMUST00000186096.7	688	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	66.2613009229369	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTCATGATGTGATTTGT	NA	False	NA	NA	False	AGTAAA	-20	NA	24717740	24746132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_24717898_24724477_24724655_24732021_24732083_24743901_24744000_24745057_24745126_24746005
transcript_12010.nic	chr11	-	2489	18	NIC	ENSMUSG00000020375.10	novel	2688	18	NA	NA	-67	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_17	12.7347167373532	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGGCCTCCAGCTTGCT	738	False	NA	0	True	AATAAA	-32	NA	50312885	50280112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_50280786_50281120_50281199_50282845_50282895_50285747_50285843_50288470_50288601_50289197_50289318_50292264_50292363_50295280_50295449_50297193_50297311_50298649_50298752_50301392_50301463_50305343_50305410_50307066_50307129_50308010_50308135_50310447_50310550_50311203_50311322_50312456_50312631_50312742
transcript_12011.known	chr11	-	2688	18	FSM	ENSMUSG00000020375.10	ENSMUST00000020643.4	2688	18	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_10	7.873128931343	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGGCCTCCAGCTTGCT	4149	False	NA	0	True	AATAAA	-32	NA	50321952	50280112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_50280786_50281120_50281199_50282845_50282895_50285747_50285843_50288470_50288601_50289197_50289318_50292264_50292363_50295280_50295449_50297193_50297311_50298649_50298752_50301392_50301463_50305343_50305410_50307066_50307129_50308010_50308135_50310447_50310550_50311203_50311322_50312456_50312631_50321610
transcript_12013.nnic	chr11	-	920	8	NNC	ENSMUSG00000020375.10	novel	2688	18	NA	NA	-67	-5701	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	24.1897262725905	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAACAGAGTCTGAC	738	False	NA	NA	False	NA	NA	NA	50312885	50304435	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_50304567_50305343_50305410_50307066_50307129_50308010_50308135_50310447_50310550_50311203_50311322_50312456_50312631_50312742
transcript_12014.nic	chr11	+	658	2	ISM	ENSMUSG00000036545.10	ENSMUST00000040523.9	7266	22	194272	3520	14586	-3520	3prime_fragment	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCTTTCCCCTTGCTTAT	NA	False	NA	NA	False	AATAAA	-21	NA	50687182	50694880	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_50687356_50694395
transcript_12015.known	chr11	-	5325	5	FSM	ENSMUSG00000044807.14	ENSMUST00000109135.9	5325	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	5.87367006223537	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATAAAGTGGTGAATGT	330	False	NA	NA	False	AATAAA	-17	NA	50718517	50701912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_50706821_50707945_50708039_50708635_50708763_50717252_50717338_50718405
transcript_12016.known	chr11	-	381	2	FSM	ENSMUSG00000044807.14	ENSMUST00000136333.2	381	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAAAAGCCTCCCTCCTCA	296	False	NA	NA	False	AAGAAA	-4	NA	50718551	50717102	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_50717338_50718405
transcript_12017.known	chr11	-	2059	6	FSM	ENSMUSG00000048728.16	ENSMUST00000050595.13	2059	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	5.56417109729742	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAATTTGTTTCTTTTTTT	NA	False	NA	-1	True	ATTAAA	-26	NA	50778270	50763546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_50765115_50768869_50768933_50774010_50774104_50774511_50774639_50777195_50777326_50778192
transcript_12018.known	chr11	-	2090	6	FSM	ENSMUSG00000048728.16	ENSMUST00000163301.8	2090	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	3.42928563989645	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAATTTGTTTCTTTTTTT	NA	False	NA	-1	True	ATTAAA	-26	NA	50778328	50763546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_50765115_50768869_50768933_50774010_50774104_50774511_50774639_50777195_50777326_50778219
transcript_12019.known	chr11	-	579	4	FSM	ENSMUSG00000048728.16	ENSMUST00000126718.8	579	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	5.43650214343336	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGGTGAAGTTGCAGCAAG	NA	False	NA	NA	False	NA	NA	NA	50778478	50764987	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_50765115_50768869_50768933_50777195_50777326_50778219
transcript_12020.known	chr11	-	1957	3	FSM	ENSMUSG00000048728.16	ENSMUST00000109131.8	1957	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAATTTGTTTCTTTTTTT	NA	False	NA	-1	True	ATTAAA	-26	NA	50778478	50763546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_50765115_50777195_50777326_50778219
transcript_12024.known	chr11	-	3069	6	FSM	ENSMUSG00000049321.18	ENSMUST00000116378.8	3069	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	26.1763251813542	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGGTATT	NA	False	NA	0	True	NA	NA	NA	50806969	50789538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_50792119_50796912_50796985_50801262_50801353_50801532_50801704_50803106_50803229_50806935
transcript_12031.nic	chr11	-	629	5	ISM	ENSMUSG00000049321.18	ENSMUST00000116378.8	3069	6	-44	7278	-21	0	5prime_fragment	FALSE	canonical	3	29	junction_4	20.1308221391974	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGTTCTTTAATGGTGTT	NA	False	NA	NA	False	AATAAA	-18	NA	50807013	50796816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_50796985_50801262_50801353_50801532_50801704_50803106_50803229_50806935
transcript_12032.known	chr11	-	1407	5	FSM	ENSMUSG00000049321.18	ENSMUST00000124748.8	1407	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	31.2209865314983	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAATCCCCCCACAGAT	NA	False	NA	NA	False	NA	NA	NA	50806979	50796010	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_50796985_50801262_50801356_50801532_50801704_50803106_50803232_50806935
transcript_12033.nic	chr11	-	585	5	ISM	ENSMUSG00000049321.18	ENSMUST00000109128.8	2782	7	-21	6931	-21	0	5prime_fragment	FALSE	canonical	3	18	junction_2	26.0516314268416	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGTTCTTTAATGGTGTT	NA	False	NA	NA	False	AATAAA	-18	NA	50807013	50796816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_50796985_50801262_50801353_50801576_50801704_50803106_50803229_50806935
transcript_12034.known	chr11	-	539	5	FSM	ENSMUSG00000049321.18	ENSMUST00000151027.2	539	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	29.0172362570938	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGTTCTTTAATGGTGTT	NA	False	NA	NA	False	AATAAA	-18	NA	50806961	50796816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_50796985_50801262_50801356_50801576_50801704_50803106_50803232_50806935
transcript_12035.known	chr11	-	2455	5	FSM	ENSMUSG00000020335.14	ENSMUST00000109124.10	2455	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.78535710713571	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAAACTGCATGGTTTTT	5251	False	NA	NA	False	NA	NA	NA	50822460	50812649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_50814668_50819390_50819487_50820203_50820331_50821727_50821813_50822331
transcript_12036.known	chr11	+	2592	5	FSM	ENSMUSG00000020364.15	ENSMUST00000102766.10	2592	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	1.29903810567666	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATAGTCCACCTAGTTAT	NA	False	NA	NA	False	AATAAA	-28	NA	50950083	50962189	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_50950230_50950898_50950982_50951686_50951814_50952229_50952326_50960049
transcript_12037.known	chr11	+	4165	5	FSM	ENSMUSG00000020364.15	ENSMUST00000109122.8	4165	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2.77263412660235	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACATTTCTTCCTGCTAA	NA	False	NA	NA	False	AATAAA	-22	NA	50950120	50963626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_50950230_50950612_50950869_50951686_50951814_50952229_50952326_50960049
transcript_1204.nic	chr1	-	2688	4	ISM	ENSMUSG00000048874.16	ENSMUST00000186733.7	7567	16	-121	27089	-7	3	5prime_fragment	FALSE	canonical	3	122	junction_2	3.09120616516523	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAATGGCTATTTTTCTTT	NA	False	NA	-9	True	AATAAA	-16	NA	30912783	30868508	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_30870641_30876185_30876348_30902067_30902337_30912658
transcript_12057.nnic	chr11	-	881	5	NNC	ENSMUSG00000086646.8	novel	937	5	NA	NA	-36	15813	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	9.2736184954957	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGTTGCAGTTTCTGAT	NA	False	NA	NA	False	AATAAA	-15	NA	51111281	51064846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_51065022_51080756_51081139_51089402_51089544_51110284_51110381_51111194
transcript_12062.known	chr11	-	937	5	FSM	ENSMUSG00000086646.8	ENSMUST00000143209.8	937	5	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_3	6.29980158417708	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATAATTGATTCTGTATGT	NA	False	NA	NA	False	NA	NA	NA	51111245	51080659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_51081139_51089402_51089544_51104871_51105042_51110284_51110381_51111194
transcript_12069.nic	chr11	-	550	4	NIC	ENSMUSG00000086646.8	novel	937	5	NA	NA	-36	165	combination_of_known_junctions	FALSE	canonical	3	10	junction_2	7.11805216802087	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAGGAAGTCTTTAACCA	NA	False	NA	NA	False	AATAAA	-27	NA	51111281	51080912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_51081139_51089402_51089544_51110284_51110381_51111194
transcript_1207.known	chr1	-	941	3	FSM	ENSMUSG00000048874.16	ENSMUST00000188780.2	941	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	46.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCACTTCTCTCAGAGACTA	NA	False	NA	NA	False	NA	NA	NA	30912975	30870285	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_30870641_30902067_30902337_30912658
transcript_12071.nnic	chr11	-	365	3	NNC	ENSMUSG00000086646.8	novel	937	5	NA	NA	-36	-28015	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	11	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCACAGTCATGGTATCT	NA	False	NA	NA	False	NA	NA	NA	51111281	51109092	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_51109275_51110284_51110381_51111194
transcript_12073.known	chr11	+	1462	6	FSM	ENSMUSG00000061469.4	ENSMUST00000126189.3	1462	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	4.24264068711928	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCCCCCCGTGCCTCATC	NA	False	NA	NA	False	AAGAAA	-30	NA	51111299	51125880	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_51111470_51122618_51122914_51123233_51123435_51124291_51124380_51124877_51125184_51125478
transcript_12077.nic	chr11	+	1989	14	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_3	53.6563688406117	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGTGATTGAGTATT	NA	False	NA	13	True	AGTAAA	-13	NA	51153935	51172591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_51154097_51157997_51158159_51158991_51159059_51161363_51161423_51162626_51162850_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
transcript_12079.nnic	chr11	+	1982	14	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	-10	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_4	49.8634822681421	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGTGATTGAGTATT	NA	False	NA	13	True	AGTAAA	-13	NA	51153966	51172591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_51154097_51157997_51158159_51161363_51161423_51162626_51162850_51163904_51163996_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
transcript_12082.nnic	chr11	+	1922	13	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	3	44	junction_2	39.9666527661916	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGTGATTGAGTATT	NA	False	NA	13	True	AGTAAA	-13	NA	51153935	51172591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_51154097_51157997_51158159_51161363_51161423_51162626_51162850_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
transcript_12083.known	chr11	+	1949	13	FSM	ENSMUSG00000020385.17	ENSMUST00000093132.13	1949	13	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	48.5840480221875	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGTGATTGAGTATT	NA	False	NA	13	True	AGTAAA	-13	NA	51153940	51172591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_51154097_51157997_51158159_51162626_51162850_51163904_51163996_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
transcript_1209.known	chr1	-	1313	1	FSM	ENSMUSG00000048874.16	ENSMUST00000185521.2	1313	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGGAATGGCTATTTTTC	6093	False	NA	-12	True	AATAAA	-13	NA	30869824	30868511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_30868500_30869800
transcript_12091.nic	chr11	+	1914	12	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	-56	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_2	35.3321898042513	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGTGATTGAGTATT	NA	False	NA	13	True	AGTAAA	-13	NA	51153884	51172591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_51154097_51157997_51158159_51162626_51162850_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
transcript_12094.known	chr11	+	1627	11	FSM	ENSMUSG00000020385.17	ENSMUST00000109113.8	1627	11	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	50.5050492525252	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGTGATTGAGTATTCT	NA	False	NA	15	True	AGTAAA	-15	NA	51154012	51172593	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_51154097_51162626_51162850_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
transcript_12099.nnic	chr11	+	1389	4	NIC	ENSMUSG00000020385.17	novel	742	7	NA	NA	0	448	combination_of_known_splicesites	FALSE	canonical	3	44	junction_2	34.3737626039914	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATTGTGTTGTTTTTTTCT	NA	False	NA	NA	False	ATTAAA	-18	NA	51153940	51163639	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_51154097_51157997_51158159_51161363_51161423_51162626
transcript_1210.known	chr1	-	889	3	FSM	ENSMUSG00000086727.9	ENSMUST00000135245.3	889	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATAGTGCTGTTTCTAA	NA	False	NA	NA	False	AATAAA	-21	NA	31261765	31242011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_31242470_31243332_31243555_31261556
transcript_12100.known	chr11	+	832	3	FSM	ENSMUSG00000020385.17	ENSMUST00000136587.8	832	3	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_2	33	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTAGTTGGAAATAACTCAG	NA	False	NA	NA	False	AAGAAA	-11	NA	51153990	51163191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_51154097_51157997_51158159_51162626
transcript_12102.known	chr11	+	442	2	FSM	ENSMUSG00000020385.17	ENSMUST00000133200.2	442	2	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGGGATTGATAGGAGA	NA	False	NA	NA	False	ACTAAA	-30	NA	51153988	51158331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_51154097_51157997
transcript_12103.nic	chr11	-	647	2	ISM	ENSMUSG00000045942.14	ENSMUST00000231433.2	855	4	1661	-142	1661	0	3prime_fragment	FALSE	canonical	2	4	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTCTCCTGCCTCATTTT	NA	False	NA	NA	False	AATAAA	-14	NA	51145430	51144477	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_51144880_51145185
transcript_12105.known	chr11	+	3116	13	FSM	ENSMUSG00000020359.14	ENSMUST00000167797.8	3116	13	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	4.87054639873415	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTCAACTTGGGATCTA	NA	False	NA	NA	False	AATAAA	-16	NA	51475583	51495316	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_51475707_51476340_51476460_51477387_51477548_51482225_51482301_51482832_51482921_51482995_51483113_51484430_51484514_51484742_51484969_51489102_51489258_51489477_51489568_51490292_51490424_51491395_51491450_51493621
transcript_1212.known	chr1	-	1163	2	FSM	ENSMUSG00000086727.9	ENSMUST00000152491.4	1163	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTCCTGTGTCATAAAGT	NA	False	NA	NA	False	AATAAA	-4	NA	31038985	31036947	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_31038025_31038899
transcript_12123.known	chr11	-	2370	7	FSM	ENSMUSG00000020358.18	ENSMUST00000074669.10	2370	7	0	0	0	0	multi-exon	FALSE	canonical	3	2171	junction_1	392.745889008826	5463	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTTCTTGACCTTGAGT	NA	False	NA	-11	True	AATAAA	-16	NA	51497674	51490926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_51492306_51493419_51493523_51495226_51495359_51495485_51495645_51496287_51496457_51497166_51497414_51497493
transcript_12135.known	chr11	+	1609	13	FSM	ENSMUSG00000020359.14	ENSMUST00000020625.7	1609	13	0	0	0	0	multi-exon	FALSE	canonical	1	19	junction_6	5.84700778176325	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATTTGGTACATAATTGT	NA	False	NA	NA	False	CATAAA	-13	NA	51475615	51492155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_51475707_51476340_51476460_51477387_51477548_51482225_51482301_51482832_51482921_51482995_51483113_51484430_51484514_51484742_51484969_51489102_51489258_51489477_51489568_51490292_51490424_51491395_51491450_51491935
transcript_12142.known	chr11	-	1946	10	FSM	ENSMUSG00000001054.10	ENSMUST00000001081.10	1946	10	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_3	13.1581078605222	825	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAATGATTGCATGGTCTT	NA	False	NA	-9	True	AATATA	-19	NA	51526723	51514499	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_51514974_51515055_51515211_51515301_51515405_51516495_51516662_51517562_51517730_51517825_51517927_51518448_51518590_51518706_51518853_51520302_51520489_51526416
transcript_12158.known	chr11	+	1042	4	FSM	ENSMUSG00000001056.4	ENSMUST00000127405.2	1042	4	0	0	0	0	multi-exon	FALSE	canonical	3	5273	junction_1	70.8723421998235	20693	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTCAGTTCTAACGGGT	NA	False	NA	NA	False	TATAAA	-3	NA	51510561	51514541	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_51510805_51510908_51510979_51513311_51513418_51513918
transcript_12159.known	chr11	+	825	3	FSM	ENSMUSG00000001056.4	ENSMUST00000001083.4	825	3	0	0	0	0	multi-exon	FALSE	canonical	3	5400	junction_2	19.5	1368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACGTGGCAAGTGTGTGG	NA	False	NA	16	True	AGTAAA	-11	NA	51510597	51514256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_51510979_51513311_51513418_51513918
transcript_1216.nnic	chr1	-	1513	10	NNC	ENSMUSG00000026134.12	novel	1975	14	NA	NA	-13385	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_9	102.591723488764	53	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTGCAAGTGGGAGTC	4281	False	NA	-2	True	AATAAA	-18	NA	33675790	33492890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33667475_33667614_33669418_33669515_33675612
transcript_12163.known	chr11	-	2367	5	FSM	ENSMUSG00000001053.16	ENSMUST00000001080.16	2367	5	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_4	13.2382022948737	250	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGGAGGAATGTTATTC	NA	False	NA	0	True	AATATA	-32	NA	51541669	51533889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_51534976_51535101_51535357_51535999_51536513_51536753_51537102_51541504
transcript_12166.known	chr11	+	3426	4	FSM	ENSMUSG00000052563.14	ENSMUST00000064493.6	3426	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	4.64279609239471	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTCGTTCCTGACTACA	NA	False	NA	11	True	AATAAA	-17	NA	51541782	51548507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_51542041_51544560_51544699_51544818_51544941_51545599
transcript_12169.known	chr11	-	892	2	FSM	ENSMUSG00000007777.10	ENSMUST00000109098.2	892	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTATGTGTATGAATGCT	4963	False	NA	-12	True	ATTAAA	-14	NA	51579701	51576212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_51576920_51579516
transcript_1217.nnic	chr1	-	1634	10	NNC	ENSMUSG00000026134.12	novel	1975	14	NA	NA	-14696	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_9	101.707763399863	76	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTGCAAGTGGGAGTC	2970	False	NA	-2	True	AATAAA	-18	NA	33677101	33492890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33667475_33667614_33669418_33669515_33676802
transcript_12170.known	chr11	-	813	2	FSM	ENSMUSG00000007777.10	ENSMUST00000007921.9	813	2	0	0	0	0	multi-exon	FALSE	canonical	3	574	junction_1	0	2939	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTATGTGTATGAATGCT	5184	False	NA	-12	True	ATTAAA	-14	NA	51579480	51576212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_51576920_51579374
transcript_12171.known	chr11	-	2094	11	FSM	ENSMUSG00000036391.17	ENSMUST00000109092.8	2094	11	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	19.6611291639112	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTTTGTTTTTTTCAG	3780	False	NA	NA	False	AATAAA	-14	NA	51647258	51612516	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_51612761_51614410_51614524_51617311_51617422_51620278_51620403_51622629_51622733_51624218_51624392_51624596_51624755_51625410_51625489_51627177_51627349_51634362_51634828_51646903
transcript_12172.known	chr11	-	2104	11	FSM	ENSMUSG00000036391.17	ENSMUST00000064297.5	2104	11	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_9	12.9015502944414	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTTTGTTTTTTTCAG	3773	False	NA	NA	False	AATAAA	-14	NA	51647265	51612516	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_51612761_51614410_51614524_51617311_51617422_51620278_51620406_51622629_51622733_51624218_51624392_51624596_51624755_51625410_51625489_51627177_51627349_51634362_51634828_51646903
transcript_12174.known	chr11	-	4273	3	FSM	ENSMUSG00000036391.17	ENSMUST00000154325.2	4273	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	41.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAATAAAAAGGAAGGGAA	NA	False	NA	NA	False	NA	NA	NA	51654461	51631388	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_51634828_51646903_51647662_51654385
transcript_12177.known	chr11	+	1201	7	FSM	ENSMUSG00000020386.6	ENSMUST00000020653.6	1201	7	0	0	0	0	multi-exon	FALSE	canonical	3	666	junction_5	46.9006041183551	2814	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCAGTGTTGGGCAGCTGT	3565	False	NA	12	True	AATAAA	-18	NA	51654513	51682752	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_51654619_51668313_51668389_51670515_51670636_51673598_51673665_51678976_51679081_51680023_51680156_51682153
transcript_12182.known	chr11	+	637	4	FSM	ENSMUSG00000020392.9	ENSMUST00000127136.2	637	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	516.72386780132	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATACAGTTCTTGTTTTG	NA	False	NA	16	True	TTTAAA	-13	NA	51858718	51867071	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_51858785_51859052_51859179_51860970_51861071_51866726
transcript_12184.known	chr11	+	1832	3	FSM	ENSMUSG00000020392.9	ENSMUST00000102763.5	1832	3	0	0	0	0	multi-exon	FALSE	canonical	3	1066	junction_1	20	2494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTAGGTTCAAGTTGTGT	NA	False	NA	NA	False	AATAAA	-20	NA	51858487	51868161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_51858785_51860970_51861071_51866726
transcript_1219.nnic	chr1	-	1413	10	NNC	ENSMUSG00000026134.12	novel	1975	14	NA	NA	-14720	0	at_least_one_novel_splicesite	FALSE	canonical	3	64	junction_9	88.3062851670253	225	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTGCAAGTGGGAGTC	2946	False	NA	-2	True	AATAAA	-18	NA	33677125	33492890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33667475_33667614_33669418_33669515_33677047
transcript_12203.known	chr11	-	1792	6	FSM	ENSMUSG00000020390.13	ENSMUST00000020657.13	1792	6	0	0	0	0	multi-exon	FALSE	canonical	3	559	junction_4	76.342910607338	2097	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACACCAGCCTCCTAGAGA	NA	False	NA	58	True	NA	NA	NA	51891311	51876323	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_51877638_51879438_51879528_51882220_51882311_51886200_51886227_51888644_51888726_51891119
transcript_12204.known	chr11	-	585	7	FSM	ENSMUSG00000020390.13	ENSMUST00000109086.8	585	7	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_6	225.904662782039	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATCCTTCATCGTTGTTG	NA	False	NA	NA	False	AATAGA	-12	NA	51891589	51877493	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_51877638_51879438_51879528_51882220_51882311_51886200_51886227_51888644_51888726_51891119_51891189_51891503
transcript_12208.nic	chr11	+	1811	9	ISM	ENSMUSG00000020389.20	ENSMUST00000063321.13	2008	13	-23	6305	-3	0	5prime_fragment	FALSE	canonical	0	0	junction_1	3.70809924354783	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCCACAGAGTCCAGACTA	NA	False	NA	NA	False	ATTAAA	-21	NA	51895044	51918391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_51895245_51895736_51895920_51901957_51902153_51909103_51909283_51910556_51910670_51913564_51913705_51916665_51916755_51917585_51917746_51917839
transcript_12209.known	chr11	+	2216	9	FSM	ENSMUSG00000020389.20	ENSMUST00000109078.8	2216	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	3.42554740151118	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAATGTC	NA	False	NA	NA	False	NA	NA	NA	51895051	51918710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_51895338_51895736_51895920_51901957_51902153_51909103_51909283_51910556_51910670_51913564_51913705_51916665_51916755_51917585_51917746_51917839
transcript_12227.known	chr11	+	1754	6	FSM	ENSMUSG00000036309.15	ENSMUST00000109072.2	1754	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	1986.48266038242	1068	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGTGTTTCTTAATGAA	591	False	NA	34	True	AATAAA	-41	NA	52123015	52137685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_52123440_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
transcript_12232.known	chr11	+	1440	6	FSM	ENSMUSG00000036309.15	ENSMUST00000037324.12	1440	6	0	0	0	0	multi-exon	FALSE	canonical	3	4483	junction_4	346.23483360286	15893	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGTGTTTCTTAATGAA	411	False	NA	34	True	AATAAA	-41	NA	52122835	52137685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_52122946_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
transcript_12233.known	chr11	+	642	6	FSM	ENSMUSG00000036309.15	ENSMUST00000147684.8	642	6	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_2	2471.62502010317	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTTTACTGAAGAGGAAGA	397	False	NA	16	True	NA	NA	NA	52122821	52135921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_52122946_52127663_52127761_52128210_52128300_52133413_52133488_52134441_52134586_52135807
transcript_12234.known	chr11	+	370	4	FSM	ENSMUSG00000036309.15	ENSMUST00000166537.8	370	4	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_3	2467.99315684266	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACTGAAGAGGAAGAGGC	439	False	NA	19	True	NA	NA	NA	52122863	52135924	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_52122946_52127663_52127761_52133413_52133488_52135807
transcript_12238.known	chr11	+	891	8	FSM	ENSMUSG00000020402.12	ENSMUST00000020673.3	891	8	0	0	0	0	multi-exon	FALSE	canonical	3	3141	junction_5	166.267181097786	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAATATTGTACAATCGTT	3539	False	NA	NA	False	NA	NA	NA	52265089	52279350	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
transcript_12239.known	chr11	+	2472	3	FSM	ENSMUSG00000036275.14	ENSMUST00000109057.8	2472	3	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_1	2	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTTCTGTTAGTGTGTT	4558	False	NA	NA	False	AATAAA	-16	NA	52287254	52299555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_52287431_52293872_52294385_52297771
transcript_12242.known	chr11	+	1373	2	FSM	ENSMUSG00000036275.14	ENSMUST00000153855.2	1373	2	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAAGAAAAAAAAG	4558	False	NA	NA	False	NA	NA	NA	52287254	52295069	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_52287431_52293872
transcript_12243.known	chr11	-	4618	19	FSM	ENSMUSG00000020361.14	ENSMUST00000020630.8	4618	19	0	0	0	0	multi-exon	FALSE	canonical	3	1487	junction_13	205.703280251368	1115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTTCTTAATTTTCTTA	NA	False	NA	-1	True	AATAAA	-22	NA	53191284	53150640	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_53152643_53153090_53153253_53153706_53153827_53155860_53155969_53156750_53156877_53157792_53157946_53159316_53159413_53160514_53160697_53161772_53161907_53162840_53162948_53163553_53163706_53165969_53166047_53171294_53171540_53174355_53174490_53174926_53175027_53177679_53177803_53179850_53179992_53183083_53183142_53190886
transcript_12252.known	chr11	+	1267	4	FSM	ENSMUSG00000018239.10	ENSMUST00000018383.10	1267	4	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_3	30.2691628926573	726	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGATGTAAGTTTCAAGT	NA	False	NA	14	True	TATAAA	-27	NA	53215505	53224128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_53215569_53218095_53218255_53221513_53221559_53223128
transcript_12255.known	chr11	-	375	2	FSM	ENSMUSG00000044894.15	ENSMUST00000156503.2	375	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	898	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGACTTTGTGTGCTT	2943	False	NA	-8	True	AATAAA	-17	NA	53321658	53319779	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_53319978_53321481
transcript_12258.known	chr11	-	405	3	FSM	ENSMUSG00000044894.15	ENSMUST00000109021.4	405	3	0	0	0	0	multi-exon	FALSE	canonical	3	885	junction_2	2412.5	8633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGACTTTGTGTGCTT	2947	False	NA	-8	True	AATAAA	-17	NA	53321654	53319779	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_53319978_53321362_53321530_53321614
transcript_12259.known	chr11	-	1359	2	FSM	ENSMUSG00000086851.2	ENSMUST00000155165.2	1359	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATACAAAAGTTAACATAAAA	NA	False	NA	NA	False	NA	NA	NA	53458132	53455514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_53456542_53457800
transcript_12260.known	chr11	+	2290	17	FSM	ENSMUSG00000018395.20	ENSMUST00000057330.15	2290	17	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_9	19.4950915296646	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGAGAGAACTCCTTAAT	919	False	NA	21	True	AATAAA	-18	NA	53458205	53491932	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_53458359_53461362_53461637_53469670_53469816_53469926_53470012_53470554_53470661_53474053_53474194_53474641_53474840_53475097_53475273_53477661_53477758_53484200_53484358_53484745_53484927_53485103_53485215_53485652_53485779_53488785_53488840_53489120_53489190_53489533_53489659_53491837
transcript_12266.nic	chr11	+	1348	9	ISM	ENSMUSG00000018395.20	ENSMUST00000057330.15	2290	17	-11	14210	-11	0	5prime_fragment	FALSE	canonical	3	61	junction_1	8.55496931613434	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGGAGAAGATGGAGAAAAAA	908	False	NA	NA	False	NA	NA	NA	53458194	53477722	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_53458359_53461362_53461637_53469670_53469816_53469926_53470012_53470554_53470661_53474053_53474194_53474641_53474840_53475097_53475273_53477661
transcript_12268.known	chr11	+	3161	18	FSM	ENSMUSG00000018395.20	ENSMUST00000120613.9	3161	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	25.820514362377	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATAAAAAAAAAAAAATAAAA	919	False	NA	NA	False	NA	NA	NA	53458205	53492794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_53458359_53461362_53461637_53469670_53469816_53469926_53470012_53470554_53470661_53474053_53474194_53474641_53474840_53475097_53475273_53477661_53477758_53481543_53481553_53484200_53484358_53484745_53484927_53485103_53485215_53485652_53485779_53488785_53488840_53489120_53489190_53489533_53489659_53491837
transcript_12269.known	chr11	-	5153	25	FSM	ENSMUSG00000020380.17	ENSMUST00000020649.14	5153	25	0	0	0	0	multi-exon	FALSE	canonical	2	205	junction_2	31.5695880379977	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGGGCATGGATGTGGGT	NA	False	NA	1	True	NA	NA	NA	53598146	53540345	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_53541483_53543060_53543195_53545703_53545847_53546359_53546446_53558848_53559074_53560456_53560585_53565524_53565639_53565729_53565823_53566728_53566840_53569691_53569886_53570216_53570344_53570859_53571050_53574028_53574267_53574952_53575129_53576976_53577135_53578921_53579105_53582939_53583147_53583534_53583729_53585727_53585894_53586109_53586239_53588940_53589146_53589648_53589835_53592783_53592936_53596811_53596896_53597753
transcript_12271.nnic	chr11	-	1944	10	NNC	ENSMUSG00000020380.17	novel	693	3	NA	NA	-29	3103	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	88.9856417881247	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAAGATTTATTTTTAT	NA	False	NA	NA	False	NA	NA	NA	53598175	53579644	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_53579844_53582939_53583147_53583534_53583729_53585727_53585894_53586109_53586239_53588940_53589146_53589648_53589835_53592783_53592936_53596811_53596896_53597753
transcript_12274.nic	chr11	-	618	3	ISM	ENSMUSG00000020380.17	ENSMUST00000124352.2	2211	12	-53	18742	-29	-10076	5prime_fragment	FALSE	canonical	3	253	junction_2	43.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAATTTAAAACCTTGGAA	NA	False	NA	NA	False	AATAAA	-5	NA	53598175	53592823	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_53592936_53596811_53596896_53597753
transcript_12275.known	chr11	-	693	3	FSM	ENSMUSG00000020380.17	ENSMUST00000152598.2	693	3	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_2	2	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTAGACTTTCAAGCTTTT	1088	False	NA	NA	False	ATTAAA	-17	NA	53585827	53582747	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_53583147_53583534_53583729_53585727
transcript_12276.known	chr11	-	3085	18	FSM	ENSMUSG00000020380.17	ENSMUST00000128483.8	3085	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	70.4614056670836	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAGAAAAGATAAATAAAGA	NA	False	NA	NA	False	ACTAAA	-17	NA	53598146	53565581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_53565639_53565729_53565823_53566728_53566840_53569691_53569886_53570216_53570344_53570859_53571050_53574028_53574267_53574952_53575129_53578921_53579105_53582939_53583147_53583534_53583729_53585727_53585894_53586109_53586239_53588940_53589146_53589648_53589835_53592783_53592936_53596811_53596896_53597753
transcript_12277.known	chr11	+	2136	10	FSM	ENSMUSG00000018899.18	ENSMUST00000108920.10	2136	10	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	9.82940913537621	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGTGTGGCTTTTTATTTA	NA	False	NA	10	True	TATAAA	-17	NA	53660840	53668149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_53661105_53662109_53662202_53663664_53663765_53664481_53664659_53664751_53664802_53664887_53665021_53665171_53665295_53665879_53665930_53666743_53666880_53667138
transcript_12279.known	chr11	+	2069	10	FSM	ENSMUSG00000018899.18	ENSMUST00000019043.13	2069	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	21.2573879677132	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGTGTGGCTTTTTATTTA	NA	False	NA	10	True	TATAAA	-17	NA	53661320	53668149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_53661518_53662109_53662202_53663664_53663765_53664481_53664659_53664751_53664802_53664887_53665021_53665171_53665295_53665879_53665930_53666743_53666880_53667138
transcript_12284.known	chr11	-	3062	10	FSM	ENSMUSG00000018900.8	ENSMUST00000019044.8	3062	10	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_7	3.67507453523138	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAATTGAATACAATCTTTA	NA	False	NA	NA	False	AATAAA	-23	NA	53782486	53755367	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_53756723_53757062_53757199_53758348_53758532_53760047_53760263_53762393_53762495_53764493_53764621_53765760_53765933_53766834_53766990_53774486_53774591_53781972
transcript_12286.known	chr11	-	3461	10	FSM	ENSMUSG00000063652.11	ENSMUST00000076493.11	3461	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.87247772737252	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATAATAGCAACTGACTA	NA	False	NA	NA	False	AATAAA	-19	NA	53871158	53840790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_53842182_53842532_53842669_53843826_53844010_53845513_53845729_53846810_53846921_53848799_53848927_53850029_53850202_53851108_53851264_53860325_53860430_53870290
transcript_12289.known	chr11	-	1182	7	FSM	ENSMUSG00000020388.13	ENSMUST00000018755.10	1182	7	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_5	18.9245578254523	723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCTAGTGTCTGGCCTGA	NA	False	NA	-2	True	AATAAA	-22	NA	53959840	53945753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_53946066_53946182_53946301_53946615_53946780_53946968_53947151_53950763_53950843_53954460_53954613_53959665
transcript_12296.known	chr11	-	1370	3	FSM	ENSMUSG00000020388.13	ENSMUST00000127271.2	1370	3	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_1	3	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACAGG	NA	False	NA	NA	False	NA	NA	NA	53959817	53949776	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_53950843_53954460_53954613_53959665
transcript_12297.known	chr11	-	962	6	FSM	ENSMUSG00000020388.13	ENSMUST00000093109.11	962	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	86.7787992541957	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCTGCTTGCTCTGGAA	NA	False	NA	-22	True	AATAAA	-2	NA	53959758	53945773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_53946066_53946615_53946780_53946968_53947151_53950763_53950843_53954460_53954613_53959665
transcript_1230.nnic	chr1	-	1196	8	NNC	ENSMUSG00000026134.12	novel	1975	14	NA	NA	214	0	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_7	107.409572788139	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTGCAAGTGGGAGTC	8791	False	NA	-2	True	AATAAA	-18	NA	33661009	33492890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33660914
transcript_12300.known	chr11	+	2263	16	FSM	ENSMUSG00000018906.15	ENSMUST00000093107.12	2263	16	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_12	14.6945190084225	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAATAGCCTTATTTT	NA	False	NA	15	True	AATAAA	-17	NA	53991749	54022478	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_53991867_53992345_53992474_54001034_54001141_54001811_54001909_54002248_54002401_54004962_54005101_54008269_54008510_54009959_54010154_54010895_54011073_54015482_54015554_54015771_54015872_54016588_54016643_54017063_54017124_54019873_54019943_54020291_54020389_54022015
transcript_12301.known	chr11	+	2230	16	FSM	ENSMUSG00000018906.15	ENSMUST00000019050.12	2230	16	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_12	14.0816665680357	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAATAGCCTTATTTT	NA	False	NA	15	True	AATAAA	-17	NA	53991788	54022478	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_53991867_53992345_53992474_54001034_54001141_54001811_54001909_54002248_54002401_54004962_54005101_54008269_54008510_54009959_54010154_54010895_54011073_54015482_54015554_54015771_54015872_54016588_54016643_54017171_54017238_54019873_54019943_54020291_54020389_54022015
transcript_12305.nnic	chr11	+	1731	12	NNC	ENSMUSG00000018906.15	novel	1997	3	NA	NA	-54	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	24.5589188660203	62	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAATAGCCTTATTTT	NA	False	NA	15	True	AATAAA	-17	NA	54003974	54022478	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_54004043_54004962_54005101_54008269_54008510_54009959_54010154_54010895_54011073_54015482_54015554_54015771_54015872_54016588_54016643_54017063_54017124_54019873_54019943_54020291_54020389_54022015
transcript_12306.nnic	chr11	+	1737	12	NNC	ENSMUSG00000018906.15	novel	1997	3	NA	NA	-54	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	24.1325540564868	53	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAATAGCCTTATTTT	NA	False	NA	15	True	AATAAA	-17	NA	54003974	54022478	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_54004043_54004962_54005101_54008269_54008510_54009959_54010154_54010895_54011073_54015482_54015554_54015771_54015872_54016588_54016643_54017171_54017238_54019873_54019943_54020291_54020389_54022015
transcript_12310.known	chr11	+	610	5	FSM	ENSMUSG00000018906.15	ENSMUST00000135596.9	610	5	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_4	6.75925291729789	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCCTGTCCTTTTGTCAT	NA	False	NA	NA	False	TTTAAA	-16	NA	53991800	54002461	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_53991867_53992345_53992474_54001034_54001141_54001811_54001909_54002248
transcript_12311.nnic	chr11	-	291	3	Intergenic	novelGene_9	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTCCAGGCAACTAGGGT	NA	False	NA	NA	False	NA	NA	NA	54176103	54152585	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr11_-_54152704_54152896_54152950_54175983
transcript_12313.known	chr11	+	5804	21	FSM	ENSMUSG00000020333.18	ENSMUST00000093106.12	5804	21	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_10	11.8346947573649	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTCATAATTTTCTTATA	NA	False	NA	NA	False	AATAAA	-22	NA	54194623	54255582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_54194749_54210977_54211199_54214066_54214182_54214815_54214881_54215891_54215994_54216386_54216487_54217940_54218120_54219227_54219261_54220745_54220798_54225877_54225952_54227761_54227840_54229237_54229373_54229825_54229961_54231322_54231419_54232584_54232658_54236001_54236091_54236703_54236821_54241383_54241528_54242847_54242950_54243816_54243889_54251885
transcript_12314.nic	chr11	+	2570	21	NIC	ENSMUSG00000020333.18	novel	5804	21	NA	NA	13	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_10	9.20584053739798	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGATATATTGTACTTAATT	NA	False	NA	5	True	ATTAAA	-19	NA	54194636	54252361	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_54194749_54210977_54211199_54214066_54214182_54214815_54214881_54215891_54215994_54216386_54216487_54217940_54218120_54219227_54219261_54220745_54220798_54225877_54225952_54227896_54227975_54229237_54229373_54229825_54229961_54231322_54231419_54232584_54232658_54236001_54236091_54236703_54236821_54241383_54241528_54242847_54242950_54243816_54243889_54251885
transcript_12315.known	chr11	+	5807	21	FSM	ENSMUSG00000020333.18	ENSMUST00000108905.10	5807	21	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	14.4874946074192	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTGTTCATAATTTTCT	NA	False	NA	NA	False	AATAAA	-18	NA	54195027	54255578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_54195160_54210977_54211199_54214066_54214182_54214815_54214881_54215891_54215994_54216386_54216487_54217940_54218120_54219227_54219261_54220745_54220798_54225877_54225952_54227761_54227840_54229237_54229373_54229825_54229961_54231322_54231419_54232584_54232658_54236001_54236091_54236703_54236821_54241383_54241528_54242847_54242950_54243816_54243889_54251885
transcript_12316.known	chr11	+	2594	21	FSM	ENSMUSG00000020333.18	ENSMUST00000108904.10	2594	21	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	12.5876924017073	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTGTACTTAATTATTT	NA	False	NA	9	True	ATTAAA	-23	NA	54195027	54252365	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_54195160_54210977_54211199_54214066_54214182_54214815_54214881_54215891_54215994_54216386_54216487_54217940_54218120_54219227_54219261_54220745_54220798_54225877_54225952_54227896_54227975_54229237_54229373_54229825_54229961_54231322_54231419_54232584_54232658_54236001_54236091_54236703_54236821_54241383_54241528_54242847_54242950_54243816_54243889_54251885
transcript_12318.known	chr11	+	1433	14	FSM	ENSMUSG00000020332.8	ENSMUST00000094193.3	1433	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_10	0.737820234355803	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAAACTGTGGGGAAATTC	NA	False	NA	NA	False	ATTAAA	-18	NA	54261477	54317616	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_54261619_54261709_54261804_54262563_54262646_54264325_54264387_54281292_54281425_54285457_54285578_54286371_54286412_54289281_54289347_54290638_54290716_54296703_54296860_54300475_54300557_54302621_54302742_54308555_54308677_54317473
transcript_12322.known	chr11	+	6255	18	FSM	ENSMUSG00000035992.16	ENSMUST00000046835.14	6255	18	0	0	0	0	multi-exon	TRUE	canonical	3	95	junction_9	15.4083965785252	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGGTAATGTTTGTGTTTC	1976	False	NA	27	True	AATAAA	-17	NA	54329024	54409061	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_54329215_54356912_54357040_54366457_54366593_54371075_54371177_54371435_54371511_54373320_54373413_54378537_54378622_54380094_54380167_54381628_54381765_54384018_54384221_54387427_54387514_54390236_54390384_54391345_54391516_54393084_54394502_54395563_54395733_54400707_54400906_54404195_54404312_54406323
transcript_12327.known	chr11	+	1829	13	FSM	ENSMUSG00000037533.21	ENSMUST00000108895.8	1829	13	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	14.7082743152735	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTATGCTCATTATTGT	NA	False	NA	NA	False	AATAAA	-15	NA	54413715	54525835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_54413945_54434404_54434476_54437198_54437256_54443615_54443700_54452150_54452221_54459178_54459323_54501613_54501746_54510711_54510890_54513141_54513279_54516686_54516846_54517410_54517564_54522017_54522183_54525585
transcript_12337.known	chr11	-	3069	6	FSM	ENSMUSG00000052298.13	ENSMUST00000064104.13	3069	6	0	0	0	0	multi-exon	FALSE	canonical	3	549	junction_4	66.5263857428013	551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTGTTTGGATTTTTCT	NA	False	NA	-12	True	AATAAA	-13	NA	54678501	54608281	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_54610551_54611068_54611184_54614399_54614502_54631063_54631377_54647231_54647386_54678385
transcript_1234.known	chr1	-	1975	14	FSM	ENSMUSG00000026134.12	ENSMUST00000027312.11	1975	14	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_10	82.0868352460372	586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTGCAAGTGGGAGTC	NA	False	NA	-2	True	AATAAA	-18	NA	33708876	33492890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33667475_33667614_33669418_33669515_33701326_33701448_33702857_33702938_33706125_33706230_33707938_33708102_33708704
transcript_12341.nnic	chr11	-	2768	5	NIC	ENSMUSG00000052298.13	novel	3069	6	NA	NA	-12	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_3	267.149770727957	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTGTTTGGATTTTTCT	NA	False	NA	-12	True	AATAAA	-13	NA	54678513	54608281	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_54610551_54611068_54611184_54614399_54614502_54647231_54647386_54678385
transcript_12349.known	chr11	-	801	3	FSM	ENSMUSG00000052298.13	ENSMUST00000136059.8	801	3	0	0	0	0	multi-exon	FALSE	canonical	3	549	junction_1	84	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGCCTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	54678467	54630811	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_54631377_54647231_54647386_54678385
transcript_12351.known	chr11	-	279	4	FSM	ENSMUSG00000020268.15	ENSMUST00000124351.2	279	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	82.0460575259747	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTTCCAGGATAAACCCAT	NA	False	NA	NA	False	NA	NA	NA	54751435	54731957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_54732029_54739404_54739487_54741170_54741239_54751377
transcript_12353.known	chr11	+	636	3	FSM	ENSMUSG00000020267.7	ENSMUST00000020504.6	636	3	0	0	0	0	multi-exon	FALSE	canonical	3	4351	junction_2	227.5	70146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGATTTGTTACTCTGGAA	NA	False	NA	34	True	AATAAA	-23	NA	54757208	54761327	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_54757427_54760673_54760779_54761014
transcript_12362.known	chr11	+	1594	5	FSM	ENSMUSG00000018339.13	ENSMUST00000082430.11	1594	5	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_4	9.98436277385793	263	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCAGCCTACTTGGAATTT	NA	False	NA	9	True	AGTAAA	-16	NA	54793597	54801203	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_54793879_54797952_54798107_54799366_54799485_54799865_54799966_54800262
transcript_12365.nic	chr11	-	2759	18	NIC	ENSMUSG00000020400.18	novel	2973	19	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	179	junction_17	40.9030417393305	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	3581	False	NA	-5	True	CATAAA	-18	NA	54846949	54801612	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54846846
transcript_12369.known	chr11	-	2834	18	FSM	ENSMUSG00000020400.18	ENSMUST00000108889.10	2834	18	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	53.1161161918674	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGACTGGCTAATTCT	3582	False	NA	-3	True	CATAAA	-20	NA	54846948	54801610	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54846846
transcript_12370.known	chr11	-	2810	18	FSM	ENSMUSG00000020400.18	ENSMUST00000018482.13	2810	18	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_17	76.4117873477302	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	6845	False	NA	-5	True	CATAAA	-18	NA	54853738	54801612	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54853658
transcript_12372.nic	chr11	-	2568	17	NIC	ENSMUSG00000020400.18	novel	2973	19	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	81	junction_16	54.30350903717	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	3600	False	NA	-5	True	CATAAA	-18	NA	54846930	54801612	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54846846
transcript_12375.known	chr11	-	2642	17	FSM	ENSMUSG00000020400.18	ENSMUST00000108886.8	2642	17	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_16	76.2520491527933	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	6841	False	NA	-5	True	CATAAA	-18	NA	54853742	54801612	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54853658
transcript_1238.known	chr1	+	4322	8	FSM	ENSMUSG00000004768.15	ENSMUST00000088287.10	4322	8	0	0	0	0	multi-exon	FALSE	canonical	2	71	junction_6	20.1190335305671	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATTGTGTGTGGTGTGTG	NA	False	NA	NA	False	AATAAA	-18	NA	33758975	33781645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_33759255_33760688_33760781_33762866_33763087_33764014_33764101_33773782_33773940_33775880_33775964_33777368_33777462_33778333
transcript_12383.known	chr11	-	2489	26	FSM	ENSMUSG00000018340.14	ENSMUST00000108883.10	2489	26	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_6	73.4786608478952	1485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGATGTGTGTGCTTTA	NA	False	NA	-4	True	NA	NA	NA	54924271	54869933	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_54870348_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54877876_54877895_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54889360_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924184
transcript_12393.known	chr11	-	2471	25	FSM	ENSMUSG00000018340.14	ENSMUST00000102727.3	2471	25	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_5	83.6892399827414	1360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGATGTGTGTGCTTTA	NA	False	NA	-4	True	NA	NA	NA	54924271	54869933	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_54870348_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54889360_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924184
transcript_12406.known	chr11	-	2096	20	FSM	ENSMUSG00000018340.14	ENSMUST00000148298.2	2096	20	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_15	45.6419280439364	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAAAACAAAAAACAAACCT	NA	False	NA	NA	False	ACTAAA	-35	NA	54924241	54881775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54889360_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924184
transcript_12407.known	chr11	-	1402	7	FSM	ENSMUSG00000049588.14	ENSMUST00000055040.13	1402	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	2.51661147842358	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGAGGGTGTATTTCATTC	4853	False	NA	NA	False	AATAAA	-23	NA	54968933	54940556	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_54941385_54941977_54942076_54943173_54943294_54943720_54943823_54945797_54945872_54951286_54951372_54968838
transcript_12408.known	chr11	+	4127	4	FSM	ENSMUSG00000000594.8	ENSMUST00000000608.8	4127	4	0	0	0	0	multi-exon	FALSE	canonical	3	325	junction_3	15.195028426722	221	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTGTTAATTTCTTTTA	NA	False	NA	NA	False	AATAAA	-20	NA	54988940	55003855	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_54989071_54994412_54994575_54999723_54999907_55000203
transcript_12409.nic	chr11	-	1598	9	ISM	ENSMUSG00000049491.16	ENSMUST00000128244.8	1841	12	4661	-10	4661	0	3prime_fragment	FALSE	canonical	0	0	junction_6	2.82566363886433	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCTTTCTTAATTTGCGG	NA	False	NA	NA	False	NA	NA	NA	55037851	55015640	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_55015988_55016428_55016599_55020373_55020541_55022364_55022461_55026084_55026304_55028114_55028200_55033588_55033685_55036971_55037061_55037522
transcript_12413.nnic	chr11	-	991	3	NNC	ENSMUSG00000049491.16	novel	1768	11	NA	NA	11492	-6617	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAAAATCTGCACTGTC	2409	False	NA	NA	False	NA	NA	NA	55031020	55022267	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_55022773_55023498_55023588_55030623
transcript_12415.known	chr11	+	520	2	FSM	ENSMUSG00000085531.2	ENSMUST00000155883.2	520	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCAGCTTGTGTGTGTGTGT	NA	False	NA	NA	False	ATTAAA	-22	NA	55027869	55031019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_55027994_55030623
transcript_12416.known	chr11	-	1772	7	FSM	ENSMUSG00000020264.6	ENSMUST00000125560.2	1772	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.577350269189626	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAGAAAAAAAAAAGA	2229	False	NA	NA	False	NA	NA	NA	55075903	55058829	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_55059755_55060679_55060899_55065493_55065579_55070150_55070247_55071532_55071622_55072370_55072462_55075636
transcript_12419.known	chr11	+	5264	11	FSM	ENSMUSG00000020261.16	ENSMUST00000108872.9	5264	11	0	0	0	0	multi-exon	TRUE	canonical	3	47	junction_5	8.1516869419771	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTTGCAAACTGTGTCTT	NA	False	NA	24	True	AATAAA	-24	NA	55095175	55127156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_55095315_55104755_55104901_55109833_55109925_55110405_55110495_55111201_55111298_55112822_55112908_55114424_55114644_55115780_55115880_55116791_55116959_55119012_55119183_55123192
transcript_12433.known	chr11	-	2115	10	FSM	ENSMUSG00000018593.14	ENSMUST00000108858.8	2115	10	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_8	195.999685058956	1133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTGTCCCGGGTGATGG	3858	False	NA	-2	True	AATAAA	-22	NA	55310724	55285325	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298103_55300753_55300824_55310613
transcript_12435.known	chr11	-	1269	10	FSM	ENSMUSG00000018593.14	ENSMUST00000214685.2	1269	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_9	224.039568815559	513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAGTAAGAAAGAAACTAG	573	False	NA	NA	False	AATACA	-28	NA	55314009	55286246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55313826
transcript_1244.known	chr1	-	1860	3	FSM	ENSMUSG00000042215.9	ENSMUST00000044691.9	1860	3	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	4.5	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTAGCATTGGCCATTAT	NA	False	NA	-5	True	NA	NA	NA	33796876	33784564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_33786098_33787297_33787408_33796659
transcript_12452.known	chr11	-	1366	11	FSM	ENSMUSG00000018593.14	ENSMUST00000213866.2	1366	11	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_10	199.894497172884	1557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAGTAAGAAAGAAACTAG	3466	False	NA	NA	False	AATACA	-28	NA	55311116	55286246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310613_55310682_55310904
transcript_12461.known	chr11	-	541	4	FSM	ENSMUSG00000018585.10	ENSMUST00000108857.2	541	4	0	0	0	0	multi-exon	FALSE	canonical	3	2715	junction_3	136.123310110927	22243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTGTCTGGTGTATGTT	NA	False	NA	-7	True	AATAAA	-20	NA	55352065	55337466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_55337611_55341282_55341452_55345706_55345783_55351913
transcript_12462.known	chr11	-	327	3	FSM	ENSMUSG00000018585.10	ENSMUST00000138412.2	327	3	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	1312.5	388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGAAGTGTCTGGTGTAT	NA	False	NA	-10	True	AATAAA	-17	NA	55352023	55337469	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_55337611_55345706_55345783_55351913
transcript_12467.known	chr11	+	6703	12	FSM	ENSMUSG00000018583.6	ENSMUST00000018727.4	6703	12	0	0	0	0	multi-exon	TRUE	canonical	3	6361	junction_7	586.595613027527	1101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATGAATTCTCTTTTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	55360510	55395664	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284
transcript_12472.known	chr11	-	1765	14	FSM	ENSMUSG00000020523.15	ENSMUST00000108850.2	1765	14	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_12	166.027587356179	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	57409429	57374617	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57404899_57405115_57409398
transcript_12474.known	chr11	-	2557	14	FSM	ENSMUSG00000020523.15	ENSMUST00000020831.13	2557	14	0	0	0	0	multi-exon	TRUE	canonical	3	63	junction_13	118.75144346678	414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCGTGGTATTTAATAGC	NA	False	NA	NA	False	AATAAA	-21	NA	57409443	57373818	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57404920_57405115_57409398
transcript_12476.nnic	chr11	-	2504	14	NNC	ENSMUSG00000020523.15	novel	2557	14	NA	NA	-57	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_12	161.785488776646	155	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCGTGGTATTTAATAGC	NA	False	NA	NA	False	AATAAA	-21	NA	57409500	57373818	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57405030_57405115_57409398
transcript_12499.nnic	chr11	-	770	6	NNC	ENSMUSG00000020523.15	novel	2557	14	NA	NA	-57	-1665	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	238.82378441018	66	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCTTGTAACTTCATCT	NA	False	NA	NA	False	NA	NA	NA	57409500	57399865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_57400058_57400203_57400293_57404067_57404161_57404461_57404562_57404920_57405115_57409398
transcript_12503.nic	chr11	-	916	5	ISM	ENSMUSG00000020523.15	ENSMUST00000130596.2	759	6	-72	1665	-57	-1665	5prime_fragment	FALSE	canonical	3	63	junction_4	198.735219576199	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCTTGTAACTTCATCT	NA	False	NA	NA	False	NA	NA	NA	57409500	57399865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_57400293_57404067_57404161_57404461_57404562_57404920_57405115_57409398
transcript_12507.known	chr11	+	4827	3	FSM	ENSMUSG00000020522.14	ENSMUST00000108849.8	4827	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	35	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTTGAATGATGTATATTA	NA	False	NA	19	True	AATAAA	-20	NA	57409489	57424641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_57409539_57418684_57419116_57420294
transcript_12508.known	chr11	+	4839	3	FSM	ENSMUSG00000020522.14	ENSMUST00000020830.14	4839	3	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	12.5	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTTGAATGATGTATATT	NA	False	NA	18	True	AATAAA	-19	NA	57409512	57424640	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_57409575_57418684_57419116_57420294
transcript_1251.known	chr1	-	3958	15	FSM	ENSMUSG00000042197.14	ENSMUST00000019861.13	3958	15	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_7	31.7753594690564	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGAGGAAATTTTTTCTA	NA	False	NA	-2	True	AATAAA	-17	NA	33853608	33800625	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_33801291_33804924_33804991_33808801_33808989_33809849_33809981_33811973_33812115_33815349_33816945_33818124_33818273_33818976_33819131_33821148_33821276_33822121_33822273_33822933_33823046_33825487_33825614_33844419_33844501_33852807_33852892_33853418
transcript_12510.known	chr11	+	1258	2	FSM	ENSMUSG00000020522.14	ENSMUST00000128971.2	1258	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGACATGTTCTTTTCATG	NA	False	NA	NA	False	AATAAA	-17	NA	57409511	57419915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_57409539_57418684
transcript_12516.known	chr11	-	714	4	FSM	ENSMUSG00000087165.8	ENSMUST00000152790.8	714	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	7.84573486395988	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATCTTGTCTCAGTGATT	NA	False	NA	-3	True	NA	NA	NA	57692243	57686324	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_57686621_57686851_57687000_57687137_57687224_57692059
transcript_12517.nnic	chr11	-	1005	3	NNC	ENSMUSG00000087165.8	novel	543	3	NA	NA	5819	4280	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGGCGGGGCTGAGAGAC	NA	False	NA	NA	False	NA	NA	NA	57686405	57682044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_57682282_57685438_57685692_57685890
transcript_12518.known	chr11	-	502	3	FSM	ENSMUSG00000087165.8	ENSMUST00000140069.2	502	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	6.5	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAACCCCCTGTTGCGGTGC	NA	False	NA	NA	False	NA	NA	NA	57692224	57686431	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_57686621_57686851_57687000_57692059
transcript_12520.known	chr11	-	543	3	FSM	ENSMUSG00000087165.8	ENSMUST00000132378.2	543	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	6.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAACTCTTCCTTTTGTCC	NA	False	NA	-23	True	NA	NA	NA	57692240	57686344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_57686621_57687137_57687224_57692059
transcript_12533.known	chr11	+	2099	7	FSM	ENSMUSG00000020515.14	ENSMUST00000108843.8	2099	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	277.140558000609	592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCATGAAGTGTGGTCTTTG	NA	False	NA	14	True	AATAAA	-19	NA	57995054	58009420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_57995175_58000381_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008264
transcript_12536.known	chr11	+	2035	7	FSM	ENSMUSG00000020515.14	ENSMUST00000020822.12	2035	7	0	0	0	0	multi-exon	FALSE	canonical	3	691	junction_3	50.6603614497787	1147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCATGAAGTGTGGTCTTTG	NA	False	NA	14	True	AATAAA	-19	NA	57994978	58009420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_57995035_58000381_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008264
transcript_12537.known	chr11	-	4919	28	FSM	ENSMUSG00000037275.15	ENSMUST00000102711.9	4919	28	0	0	0	0	multi-exon	TRUE	canonical	3	91	junction_2	45.8600782424762	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAATGTCTCGTTCTGTGG	NA	False	NA	-34	True	TATAAA	-12	NA	58059365	58012115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_58012611_58013107_58013202_58015757_58016245_58017257_58017421_58019470_58019726_58020843_58021055_58021468_58021589_58025589_58025738_58027683_58027822_58028493_58028590_58029844_58029968_58030320_58030435_58032413_58032636_58036174_58036347_58037218_58037359_58038652_58038835_58039240_58039315_58041371_58041509_58042357_58042441_58045927_58046014_58046457_58046671_58047492_58047659_58051531_58051665_58054619_58054740_58055082_58055235_58056718_58056901_58058534_58058696_58059113
transcript_12538.known	chr11	-	4922	28	FSM	ENSMUSG00000037275.15	ENSMUST00000035604.13	4922	28	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_2	43.3607067704434	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAATGTCTCGTTCTGTGG	NA	False	NA	-34	True	TATAAA	-12	NA	58059365	58012115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_58012611_58013107_58013202_58015757_58016245_58017257_58017421_58019470_58019726_58020843_58021055_58021468_58021589_58025589_58025738_58027683_58027822_58028493_58028593_58029844_58029968_58030320_58030435_58032413_58032636_58036174_58036347_58037218_58037359_58038652_58038835_58039240_58039315_58041371_58041509_58042357_58042441_58045927_58046014_58046457_58046671_58047492_58047659_58051531_58051665_58054619_58054740_58055082_58055235_58056718_58056901_58058534_58058696_58059113
transcript_12541.known	chr11	+	722	7	FSM	ENSMUSG00000020514.9	ENSMUST00000020820.2	722	7	0	0	0	0	multi-exon	TRUE	canonical	3	1080	junction_1	114.661821603066	10087	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGTTTCATTGAATTATT	1481	False	NA	12	True	AGTAAA	-15	NA	58062486	58070391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_58062540_58062619_58062669_58063858_58063977_58066102_58066169_58066957_58067036_58068042_58068113_58070103
transcript_12542.known	chr11	+	525	5	FSM	ENSMUSG00000020514.9	ENSMUST00000133038.8	525	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	520.737457842241	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTAAGACTCGGTGGTTG	1496	False	NA	NA	False	ATTAAA	-1	NA	58062501	58067032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_58062540_58062619_58062848_58063858_58063977_58066102_58066169_58066957
transcript_12545.known	chr11	+	2022	3	FSM	ENSMUSG00000078853.9	ENSMUST00000035266.11	2022	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTGTTCTCTTCTTATCT	NA	False	NA	NA	False	AATAAA	-41	NA	58090381	58098417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_58090606_58092293_58092544_58096869
transcript_12546.known	chr11	+	3459	2	FSM	ENSMUSG00000069874.8	ENSMUST00000108836.2	3459	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATGTATTATTTTTGTTC	1594	False	NA	NA	False	AATAAA	-23	NA	58105853	58113605	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_58105997_58110289
transcript_12548.known	chr11	+	1860	12	FSM	ENSMUSG00000037243.18	ENSMUST00000049353.9	1860	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	44.8549544883144	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATATAAGAATCTGGGAGT	7776	False	NA	28	True	AATAAA	-35	NA	58197997	58205453	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_58198083_58198337_58198588_58198798_58198831_58199620_58199885_58200217_58200267_58200353_58200492_58200779_58200999_58201081_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
transcript_12551.known	chr11	+	1887	12	FSM	ENSMUSG00000037243.18	ENSMUST00000153510.9	1887	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	49.3946830209872	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTGGTGCTACAGATAT	7673	False	NA	14	True	AATAAA	-21	NA	58197894	58205439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_58198083_58198399_58198588_58198798_58198831_58199620_58199885_58200217_58200267_58200353_58200492_58200779_58200999_58201081_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
transcript_12555.nic	chr11	+	2261	11	NIC	ENSMUSG00000037243.18	novel	1887	12	NA	NA	-24	0	intron_retention	FALSE	canonical	3	82	junction_1	26.5083005867973	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTGGTGCTACAGATAT	7649	False	NA	14	True	AATAAA	-21	NA	58197870	58205439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_58198083_58198337_58198588_58198798_58198831_58199620_58199885_58200217_58200267_58200353_58200999_58201081_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
transcript_12557.nic	chr11	+	2195	11	NIC	ENSMUSG00000037243.18	novel	1887	12	NA	NA	-20	0	intron_retention	FALSE	canonical	3	39	junction_1	35.6712769606023	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTGGTGCTACAGATAT	7653	False	NA	14	True	AATAAA	-21	NA	58197874	58205439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_58198083_58198399_58198588_58198798_58198831_58199620_58199885_58200217_58200267_58200353_58200999_58201081_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
transcript_1256.nnic	chr1	-	929	7	NNC	ENSMUSG00000042197.14	novel	542	2	NA	NA	46	-273	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_1	116.134500568187	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTCTGCTGTGGCTCATT	NA	False	NA	NA	False	AATAAA	-18	NA	33853562	33821531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_33821763_33822121_33822273_33822933_33823046_33825487_33825614_33844419_33844501_33852807_33852892_33853418
transcript_12570.known	chr11	-	426	3	FSM	ENSMUSG00000049755.15	ENSMUST00000135097.8	426	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	2.5	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTCATCCCAAACTAAAAC	647	False	NA	NA	False	AGTAAA	-23	NA	58214140	58210529	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_58210781_58213425_58213556_58214095
transcript_12571.nnic	chr11	-	527	3	NIC	ENSMUSG00000049755.15	novel	426	3	NA	NA	-18	0	combination_of_known_splicesites	FALSE	canonical	3	6	junction_2	11.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTCATCCCAAACTAAAAC	NA	False	NA	NA	False	AGTAAA	-23	NA	58221183	58210529	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_58210781_58213425_58213556_58221037
transcript_12572.known	chr11	-	423	3	FSM	ENSMUSG00000049755.15	ENSMUST00000130217.2	423	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	4	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATAGTAAAGTATTCAA	647	False	NA	NA	False	AATAAA	-16	NA	58214140	58210563	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_58210781_58213394_58213556_58214095
transcript_12577.nnic	chr11	-	570	2	NNC	ENSMUSG00000049755.15	novel	697	3	NA	NA	-303	-2112	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTTTAGTCAAGAGCTG	9971	False	NA	NA	False	AGTAAA	-11	NA	58221468	58220658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_58221067_58221306
transcript_12578.known	chr11	-	3125	1	FSM	ENSMUSG00000049755.15	ENSMUST00000185661.2	3125	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAACAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	58221165	58218040	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_58218000_58221200
transcript_12580.known	chr11	+	2977	7	FSM	ENSMUSG00000013646.18	ENSMUST00000073128.7	2977	7	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	22.1716786313832	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGTTTACTGTCTGTTAA	469	False	NA	16	True	AATAAA	-17	NA	58221575	58238551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_58221619_58222079_58222690_58228562_58228626_58228774_58228904_58232111_58232274_58236137_58236312_58236755
transcript_12582.known	chr11	-	471	1	FSM	ENSMUSG00000085342.2	ENSMUST00000134617.2	471	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	340	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGTAGAGCAGAGTTGGA	NA	False	NA	NA	False	NA	NA	NA	58400087	58399616	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_58399600_58400100
transcript_12586.nnic	chr11	+	2276	4	NNC	ENSMUSG00000107677.3	novel	2719	3	NA	NA	-1328	-210	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	4.18993502999218	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAATAATGTTATGTCAAGA	1819	False	NA	NA	False	AATAAA	-9	NA	58642231	58650287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_58642396_58643956_58644171_58647616_58647657_58648429
transcript_12587.known	chr11	-	561	4	FSM	ENSMUSG00000049154.13	ENSMUST00000239007.2	561	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	3.29983164553722	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGAAGACTATGTCACAGA	NA	False	NA	NA	False	AATAAA	-21	NA	58692786	58683628	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_58683826_58687380_58687485_58689461_58689522_58692586
transcript_12589.nnic	chr11	-	346	3	NNC	ENSMUSG00000049154.13	novel	501	3	NA	NA	4500	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	12	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGAAGACTATGTCACAGA	NA	False	NA	NA	False	AATAAA	-21	NA	58688286	58683628	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_58683826_58687380_58687485_58688241
transcript_12590.known	chr11	-	493	3	FSM	ENSMUSG00000049154.13	ENSMUST00000060581.5	493	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	12.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAATCTACAGAAGACTAT	NA	False	NA	NA	False	AATAAA	-13	NA	58692786	58683636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_58683826_58687380_58687485_58692586
transcript_12592.known	chr11	+	4100	5	FSM	ENSMUSG00000072915.4	ENSMUST00000139337.3	4100	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_4	6.04152298679729	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCTCCGAGTGGGCCTCT	NA	False	NA	NA	False	AATAAA	-22	NA	58737983	58752782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_58738086_58739471_58739529_58745085_58745213_58746886_58746980_58749061
transcript_12595.known	chr11	+	2524	1	FSM	ENSMUSG00000072915.4	ENSMUST00000093768.4	2524	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCTCCGAGTGGGCCTCT	NA	False	NA	NA	False	AATAAA	-22	NA	58750258	58752782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_58750300_58752800
transcript_12596.known	chr11	+	3866	5	FSM	ENSMUSG00000020491.16	ENSMUST00000073924.10	3866	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	8.74642784226795	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAAGTGTTAAAAGTGCTA	NA	False	NA	NA	False	ATTAAA	-16	NA	58758041	58774114	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_58758136_58759640_58759833_58767519_58767647_58769601_58769695_58770754
transcript_12598.known	chr11	-	3890	5	FSM	ENSMUSG00000037001.11	ENSMUST00000102703.2	3890	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	4.94974746830583	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACACCATTTTCTCTTAT	7184	False	NA	NA	False	AATAAA	-19	NA	58795051	58778978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_58782373_58783787_58783881_58791390_58791518_58793568_58793734_58794940
transcript_12599.known	chr11	+	614	1	FSM	ENSMUSG00000056895.5	ENSMUST00000078267.5	614	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGCGTAGTTTAATAGAT	NA	False	NA	14	True	AATAAA	-22	NA	58839745	58840359	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_58839700_58840400
transcript_12600.nnic	chr11	-	486	3	NNC	ENSMUSG00000085379.2	novel	3201	2	NA	NA	7163	-2520	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCCTGGTGTCAGTGGG	NA	False	NA	NA	False	NA	NA	NA	58861713	58859093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_58859406_58859893_58860003_58861648
transcript_12601.known	chr11	-	3201	2	FSM	ENSMUSG00000085379.2	ENSMUST00000131221.2	3201	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAACATGTGGATGAGTCAC	NA	False	NA	NA	False	AATAAA	-25	NA	58868876	58856573	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_58859406_58868507
transcript_12602.known	chr11	+	2301	7	FSM	ENSMUSG00000020455.17	ENSMUST00000108810.10	2301	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	38.6566078870525	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTCTGCTTATCCTGTG	1688	False	NA	15	True	AATAAA	-15	NA	58868940	58882284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_58869471_58872066_58872163_58872818_58873050_58878458_58878507_58879550_58879574_58879654_58879756_58881012
transcript_12604.known	chr11	+	2251	6	FSM	ENSMUSG00000020455.17	ENSMUST00000093061.7	2251	6	0	0	0	0	multi-exon	FALSE	canonical	2	58	junction_2	16.6781293915115	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTCTCTGCTTATCCTGT	1689	False	NA	14	True	AATAAA	-14	NA	58868941	58882283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_58869471_58872066_58872163_58872818_58873050_58879550_58879574_58879654_58879756_58881012
transcript_12607.known	chr11	+	3522	5	FSM	ENSMUSG00000020455.17	ENSMUST00000108809.8	3522	5	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	36.1481327318577	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTCTCTGCTTATCCT	1666	False	NA	12	True	AATAAA	-12	NA	58868918	58882281	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_58869471_58872066_58872163_58872818_58873050_58879550_58879574_58879661
transcript_12608.known	chr11	-	4021	3	FSM	ENSMUSG00000049287.6	ENSMUST00000054523.6	4021	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	4.5	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGGAGTTGTTTGTTTT	NA	False	NA	NA	False	AATAAA	-31	NA	59054565	59046194	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_59049486_59049663_59050005_59054176
transcript_12618.known	chr11	-	1078	8	FSM	ENSMUSG00000020444.20	ENSMUST00000170202.9	1078	8	0	0	0	0	multi-exon	FALSE	canonical	3	619	junction_7	90.3745042609262	3913	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAGTGTCACAGCCCTCC	1470	False	NA	-20	True	AATAAA	-13	NA	59082778	59074700	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_59075014_59075261_59075348_59075854_59075940_59076019_59076159_59076767_59076865_59077225_59077268_59077599_59077714_59082576
transcript_1262.nnic	chr1	+	1880	10	NNC	ENSMUSG00000026127.14	novel	5836	9	NA	NA	-392	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	221.497930765354	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGCTGAGGTTGGGTTAA	5221	False	NA	52	True	AATAAA	-15	NA	34478539	34488437	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_34479009_34479121_34479231_34481990_34482075_34482458_34482569_34482643_34482777_34482849_34483005_34483077_34483173_34483276_34483351_34487706_34487954_34488033
transcript_12621.known	chr11	+	729	4	FSM	ENSMUSG00000036860.15	ENSMUST00000108784.4	729	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	265.902655538117	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGTCATTGTCTTCTT	NA	False	NA	9	True	NA	NA	NA	59093363	59096714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_59093546_59094997_59095082_59095360_59095584_59096474
transcript_12625.nnic	chr11	+	647	3	NIC	ENSMUSG00000036860.15	novel	718	4	NA	NA	-31	0	combination_of_known_splicesites	FALSE	canonical	3	65	junction_1	260	641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGTCATTGTCTTCTT	NA	False	NA	9	True	NA	NA	NA	59093280	59096714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_59093486_59095381_59095584_59096474
transcript_12628.nnic	chr11	+	448	2	NIC	ENSMUSG00000036860.15	novel	718	4	NA	NA	-34	0	combination_of_known_splicesites	FALSE	canonical	3	57	junction_1	0	692	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGTCATTGTCTTCTT	NA	False	NA	9	True	NA	NA	NA	59093277	59096714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_59093486_59096474
transcript_12629.known	chr11	+	718	4	FSM	ENSMUSG00000036860.15	ENSMUST00000108787.9	718	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	235.799820940465	1511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGTCATTGTCTTCTT	NA	False	NA	9	True	NA	NA	NA	59093314	59096714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_59093486_59094997_59095082_59095360_59095584_59096474
transcript_12630.known	chr11	+	792	4	FSM	ENSMUSG00000036860.15	ENSMUST00000108785.2	792	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	266.007936389541	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGACTTTTGGGGTTGACT	NA	False	NA	12	True	ATTAAA	-26	NA	59093330	59096828	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_59093486_59095000_59095082_59095381_59095584_59096474
transcript_12633.known	chr11	+	1285	7	FSM	ENSMUSG00000020441.7	ENSMUST00000020719.7	1285	7	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_6	17.464249196573	453	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGTATATTATCTCGCT	NA	False	NA	7	True	AGTAAA	-15	NA	59099146	59101564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_59099500_59099645_59099692_59099794_59099878_59099953_59100027_59100133_59100220_59100798_59100931_59101052
transcript_12653.known	chr11	-	1800	5	FSM	ENSMUSG00000048076.15	ENSMUST00000061242.8	1800	5	0	0	0	0	multi-exon	FALSE	canonical	3	1704	junction_4	263.796678333902	5728	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGGCTTGTGTGTCAGT	1847	False	NA	-4	True	AATAAA	-15	NA	59119096	59102239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165_59104350_59118998
transcript_12657.known	chr11	-	1243	5	FSM	ENSMUSG00000049291.7	ENSMUST00000061481.7	1243	5	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_3	3.57071421427143	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAATGCCTCAGAGCTC	NA	False	NA	NA	False	ATTAAA	-9	NA	59266483	59263494	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_59263997_59264251_59264395_59264991_59265264_59265982_59266146_59266320
transcript_12661.known	chr11	+	659	3	FSM	ENSMUSG00000086910.2	ENSMUST00000133698.2	659	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTTGGGAAAAATGCCTCC	NA	False	NA	NA	False	NA	NA	NA	59266286	59270731	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_59266712_59269251_59269320_59270565
transcript_12662.nnic	chr11	+	563	3	NNC	ENSMUSG00000086910.2	novel	659	3	NA	NA	172	18837	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	0.5	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTCTAGTCTGAACTCAA	NA	False	NA	NA	False	AATAAA	-16	NA	59266458	59289568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_59266712_59269251_59269320_59289326
transcript_12663.nnic	chr11	-	729	3	NNC	ENSMUSG00000049291.7	novel	1243	5	NA	NA	1861	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_2	3.5	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAATGCCTCAGAGCTC	NA	False	NA	NA	False	ATTAAA	-9	NA	59264622	59263494	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_59263997_59264251_59264395_59264538
transcript_12667.known	chr11	+	4351	6	FSM	ENSMUSG00000036819.15	ENSMUST00000108777.10	4351	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	13.8506317545446	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTAACCCCAGCACTTGG	9481	False	NA	7	True	NA	NA	NA	59340870	59349299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_59341339_59341500_59341667_59344336_59344472_59344617_59344886_59345758_59345906_59346132
transcript_12670.known	chr11	+	4315	6	FSM	ENSMUSG00000036819.15	ENSMUST00000045279.13	4315	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	19.0326036053925	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTAACCCCAGCACTTGG	9481	False	NA	7	True	NA	NA	NA	59340870	59349299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_59341339_59341500_59341667_59344336_59344472_59344653_59344886_59345758_59345906_59346132
transcript_12671.known	chr11	+	4359	6	FSM	ENSMUSG00000036819.15	ENSMUST00000147163.8	4359	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	10.3614670775909	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTATGTGGTTTTAACG	9481	False	NA	101	True	NA	NA	NA	59340870	59349393	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_59341339_59341500_59341667_59344336_59344472_59344703_59344886_59345758_59345906_59346132
transcript_12678.nic	chr11	-	1985	6	NIC	ENSMUSG00000009894.16	novel	1896	5	NA	NA	-31	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_5	132.4259793243	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCGGGTCTATAACAGCCA	NA	False	NA	3	True	NA	NA	NA	59340864	59297959	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_59298637_59312350_59312476_59319166_59319640_59328803_59329340_59333617_59333668_59340740
transcript_12682.known	chr11	-	1896	5	FSM	ENSMUSG00000009894.16	ENSMUST00000010038.10	1896	5	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_2	15.4110350074224	573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCGGGTCTATAACAGCCA	NA	False	NA	3	True	NA	NA	NA	59340825	59297959	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_59298637_59312350_59312476_59319166_59319640_59328803_59329340_59340740
transcript_12686.known	chr11	-	3412	4	FSM	ENSMUSG00000054519.9	ENSMUST00000057799.8	3412	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	2.86744175568088	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAGAAGAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	59363300	59352022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_59355113_59355837_59355899_59356276_59356404_59363166
transcript_12688.known	chr11	-	4064	10	FSM	ENSMUSG00000020472.15	ENSMUST00000013262.15	4064	10	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	26.5236907846458	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTTTCTTCTATCCTTGT	NA	False	NA	-1	True	AATAAA	-25	NA	59397470	59376345	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_59378644_59382940_59383055_59383996_59384108_59384540_59384674_59390369_59390447_59393745_59393927_59394209_59394637_59394973_59395081_59396653_59396789_59396989
transcript_12689.known	chr11	+	1883	5	FSM	ENSMUSG00000072893.13	ENSMUST00000145533.8	1883	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	3.08220700148449	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGCTCTATTGCATTTAT	NA	False	NA	NA	False	NA	NA	NA	59396510	59401899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_59397713_59398016_59398139_59398656_59398765_59400479_59400577_59401545
transcript_1269.known	chr1	+	5836	9	FSM	ENSMUSG00000026127.14	ENSMUST00000027303.14	5836	9	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_1	56.5552826887109	1451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGCTGAGGTTGGGTTAA	5613	False	NA	52	True	AATAAA	-15	NA	34478931	34488437	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_34479009_34479121_34479231_34481990_34482075_34482458_34482569_34482643_34482777_34482849_34483005_34483077_34483173_34483276_34483351_34483438
transcript_12692.nnic	chr11	-	886	2	NNC	ENSMUSG00000020472.15	novel	361	3	NA	NA	59	722	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGTACTTGCACGTTTTT	4110	False	NA	NA	False	AGTAAA	-27	NA	59417518	59415555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_59416243_59417319
transcript_12693.known	chr11	+	8766	24	FSM	ENSMUSG00000005417.18	ENSMUST00000116371.8	8766	24	0	0	0	0	multi-exon	TRUE	canonical	3	400	junction_2	48.3490381455828	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGCATGCATATGGCTG	3585	False	NA	NA	False	AATAAA	-16	NA	59553332	59671680	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_59553775_59586951_59587030_59587783_59587850_59618377_59618530_59622333_59622419_59626655_59626891_59627897_59628055_59631945_59632088_59632816_59632925_59634596_59634654_59635577_59635647_59639372_59639463_59640344_59640455_59643315_59643887_59645818_59645936_59655205_59655354_59656233_59656352_59657553_59657714_59658780_59658901_59660038_59660126_59660709_59660873_59662442_59662529_59662977_59663044_59666341
transcript_12694.known	chr11	-	948	2	FSM	ENSMUSG00000043648.8	ENSMUST00000125307.2	948	2	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCACGCCTGCAGCTTGCC	NA	False	NA	NA	False	NA	NA	NA	59678468	59675528	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_59676052_59678043
transcript_12696.known	chr11	-	1753	2	FSM	ENSMUSG00000043648.8	ENSMUST00000051493.8	1753	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTGCATGTCTACCTTA	NA	False	NA	-13	True	AATAAA	-16	NA	59678471	59674722	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_59676052_59678047
transcript_12699.known	chr11	-	3437	13	FSM	ENSMUSG00000032633.13	ENSMUST00000102697.10	3437	13	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_12	22.951034835057	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGAGGTTGGTACCAG	NA	False	NA	NA	False	NA	NA	NA	59700842	59682233	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_59683638_59684911_59685018_59685098_59685231_59685966_59686091_59686575_59686690_59688880_59689072_59690179_59690272_59691868_59692030_59692954_59693177_59694574_59694722_59695346_59695618_59698625_59698742_59700485
transcript_127.known	SIRV1	-	973	3	FSM	SIRV1A	SIRV106	973	3	0	0	0	0	multi-exon	FALSE	canonical	2	497	junction_2	204	7888	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10786	1000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV1_-_1485_7552_7809_10553
transcript_12713.known	chr11	+	1316	5	FSM	ENSMUSG00000032615.15	ENSMUST00000149076.8	1316	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	25.0337272494529	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGCTGTGGCCTTCTC	2645	False	NA	6	True	AATAAA	-16	NA	59730272	59767359	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_59730583_59743616_59743718_59751575_59751637_59765378_59765494_59766630
transcript_12715.known	chr11	+	1306	5	FSM	ENSMUSG00000032615.15	ENSMUST00000102695.4	1306	5	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	9.12414379544733	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGCTGTGGCCTTCTC	1719	False	NA	6	True	AATAAA	-16	NA	59738898	59767359	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_59739199_59743616_59743718_59751575_59751637_59765378_59765494_59766630
transcript_12716.known	chr11	+	1387	5	FSM	ENSMUSG00000032615.15	ENSMUST00000137695.2	1387	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	25.8976350271603	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGCTGTGGCCTTCTC	1750	False	NA	6	True	AATAAA	-16	NA	59738929	59767359	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_59739311_59743616_59743718_59751575_59751637_59765378_59765494_59766630
transcript_12724.known	chr11	+	771	2	FSM	ENSMUSG00000087249.2	ENSMUST00000151825.2	771	2	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	0	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGCATCTGTGCAAGAGT	NA	False	NA	NA	False	NA	NA	NA	59700905	59709317	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_59701088_59708728
transcript_12725.known	chr11	-	1646	12	FSM	ENSMUSG00000019373.12	ENSMUST00000019517.10	1646	12	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_5	45.2577558304642	1183	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAATGTGTGTTCTCTCA	NA	False	NA	-4	True	ATTAAA	-27	NA	59730664	59708620	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_59708935_59709244_59709326_59710830_59710945_59712125_59712213_59715100_59715275_59717115_59717257_59718671_59718852_59720972_59721066_59723709_59723760_59723857_59723971_59727716_59727847_59730495
transcript_12727.known	chr11	+	274	2	FSM	ENSMUSG00000085551.2	ENSMUST00000130205.2	274	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTCAGCTCTGACGAAAG	2003	False	NA	NA	False	AATAAA	-16	NA	59812324	59812715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_59812434_59812550
transcript_12728.nnic	chr11	+	350	2	NNC	ENSMUSG00000085551.2	novel	274	2	NA	NA	-39	2	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	0	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCAGCTCTGACGAAAGCT	1964	False	NA	NA	False	AATAAA	-18	NA	59812285	59812717	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_59812469_59812550
transcript_12729.known	chr11	-	446	3	FSM	ENSMUSG00000085260.8	ENSMUST00000139794.8	446	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGAAGGTATATCTTAG	9279	False	NA	NA	False	ATTAAA	-25	NA	59838967	59837714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_59837923_59838649_59838748_59838827
transcript_12730.known	chr11	-	527	2	FSM	ENSMUSG00000085260.8	ENSMUST00000146334.2	527	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGAAGGTATATCTTAG	9278	False	NA	NA	False	ATTAAA	-25	NA	59838968	59837714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_59837923_59838649
transcript_12731.known	chr11	+	1920	2	FSM	ENSMUSG00000061650.7	ENSMUST00000081980.7	1920	2	0	0	0	0	multi-exon	FALSE	canonical	3	425	junction_1	0	1226	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACATGGTTTGCCTGTTGGC	NA	False	NA	10	True	ATTAAA	-21	NA	59839031	59853031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_59839305_59851384
transcript_12732.known	chr11	-	1611	2	FSM	ENSMUSG00000049892.8	ENSMUST00000062405.8	1611	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGCTTTGCTTTTAGGTT	NA	False	NA	NA	False	AATAAA	-20	NA	59855770	59854006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_59855193_59855345
transcript_12735.known	chr11	-	961	7	FSM	ENSMUSG00000000301.17	ENSMUST00000102693.9	961	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	8.67307455417179	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTCTGGTCTCCTTCCCA	NA	False	NA	1	True	AATAAA	-19	NA	59937307	59861439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_59861702_59862009_59862085_59864893_59865006_59867664_59867811_59874268_59874385_59922538_59922647_59937165
transcript_12736.nnic	chr11	-	1047	7	NNC	ENSMUSG00000000301.17	novel	1003	7	NA	NA	-13117	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	14.1499901845274	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTCTGGTCTCCTTCCCA	NA	False	NA	1	True	AATAAA	-19	NA	59950432	59861439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_59861702_59862009_59862085_59864893_59865006_59867664_59867811_59874268_59874385_59922538_59922647_59950204
transcript_12737.nnic	chr11	-	824	6	NNC	ENSMUSG00000000301.17	novel	1003	7	NA	NA	-15916	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	15.663971399361	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTCTGGTCTCCTTCCCA	NA	False	NA	1	True	AATAAA	-19	NA	59890482	59861439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_59861702_59862009_59862085_59864893_59865006_59867664_59867811_59874268_59874385_59890369
transcript_12738.nic	chr11	-	942	6	NIC	ENSMUSG00000000301.17	novel	961	7	NA	NA	-81	0	combination_of_known_junctions	TRUE	canonical	1	2	junction_5	14.8942942095287	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTCTGGTCTCCTTCCCA	NA	False	NA	1	True	AATAAA	-19	NA	59937396	59861439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_59861702_59862009_59862085_59864893_59865006_59867664_59867811_59874268_59874385_59937165
transcript_12749.nnic	chr11	+	916	3	NNC	ENSMUSG00000062115.16	novel	7217	2	NA	NA	-8561	-758	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGGGGGCCCCCCCCTCCC	NA	False	NA	NA	False	NA	NA	NA	60022346	60031315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_60022730_60029146_60029242_60030877
transcript_12750.known	chr11	-	1111	2	FSM	ENSMUSG00000051008.6	ENSMUST00000130746.2	1111	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACTGTAGTCCTAGATAA	NA	False	NA	NA	False	AATAAA	-28	NA	60006056	60003044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_60003620_60005520
transcript_12751.known	chr11	-	4999	15	FSM	ENSMUSG00000000538.19	ENSMUST00000102683.11	4999	15	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_8	7.39553091745416	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTGTGTGATGTCTGA	NA	False	NA	-1	True	AATAAA	-14	NA	60243731	60117540	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_60121068_60121926_60121964_60123723_60123784_60132643_60132720_60133533_60133652_60135887_60136012_60136461_60136511_60139756_60139891_60149681_60149799_60151880_60152040_60153474_60153610_60161143_60161294_60165749_60165829_60171024_60171110_60243582
transcript_12752.known	chr11	-	2151	13	FSM	ENSMUSG00000000538.19	ENSMUST00000064019.15	2151	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	13.4935684268057	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGGATAGTCATGTGTGTA	NA	False	NA	NA	False	AATAAA	-13	NA	60243731	60131395	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_60132172_60132643_60132720_60133533_60133652_60135887_60136012_60136461_60136511_60139756_60139891_60149681_60149799_60151880_60152040_60153474_60153610_60161143_60161294_60165749_60165829_60171024_60171110_60243582
transcript_12753.known	chr11	+	1858	14	FSM	ENSMUSG00000056598.17	ENSMUST00000108722.5	1858	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_8	9.60892090438596	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAAAAGGTCTGGTGTCA	3472	False	NA	NA	False	AATATA	-14	NA	60244205	60285159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_60244259_60244927_60245027_60249443_60249643_60254289_60254407_60255691_60255859_60261294_60261442_60265903_60266024_60266619_60266731_60268633_60268811_60275039_60275172_60278118_60278190_60279638_60279763_60284522_60284655_60284950
transcript_12760.nnic	chr11	+	679	4	NNC	ENSMUSG00000056598.17	novel	2061	7	NA	NA	-127	-12946	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	4.64279609239471	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGCTCTCCCTGTTATAT	3294	False	NA	NA	False	AATATA	-14	NA	60244027	60249884	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_60244259_60244927_60245027_60249443_60249643_60249734
transcript_12762.nic	chr11	+	889	3	ISM	ENSMUSG00000056598.17	ENSMUST00000070805.13	2061	7	-245	12946	-245	-12946	5prime_fragment	FALSE	canonical	2	6	junction_1	4	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGCTCTCCCTGTTATAT	3176	False	NA	NA	False	AATATA	-14	NA	60243909	60249884	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_60244259_60244927_60245027_60249443
transcript_12764.nic	chr11	-	1691	9	NIC	ENSMUSG00000042709.16	novel	719	8	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_8	131.387249666777	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTGGTCTAAGCAGTT	NA	False	NA	0	True	NA	NA	NA	60307927	60291451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296683_60298119_60298218_60300085_60300232_60300411_60300457_60302492_60302556_60307811
transcript_12766.nic	chr11	-	1712	9	NIC	ENSMUSG00000042709.16	novel	719	8	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_8	146.351460532514	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTGGTCTAAGCAGTT	NA	False	NA	0	True	NA	NA	NA	60307927	60291451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296704_60298119_60298218_60300085_60300232_60300411_60300457_60302492_60302556_60307811
transcript_12774.known	chr11	-	1849	8	FSM	ENSMUSG00000042709.16	ENSMUST00000239016.2	1849	8	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_1	36.2902134443535	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAGTGAATCTTTG	NA	False	NA	-12	True	NA	NA	NA	60307925	60291463	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296683_60298119_60298218_60300085_60300232_60300411_60300457_60307576
transcript_12775.nic	chr11	-	1628	8	NIC	ENSMUSG00000042709.16	novel	1813	8	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_7	105.029830553622	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTGGTCTAAGCAGTT	NA	False	NA	0	True	NA	NA	NA	60307927	60291451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296683_60298119_60298218_60300085_60300232_60300411_60300457_60307811
transcript_12777.known	chr11	-	949	8	FSM	ENSMUSG00000042709.16	ENSMUST00000145532.9	949	8	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_4	104.174892192242	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTGCTGCTGGCACCCTT	NA	False	NA	NA	False	NA	NA	NA	60307844	60292303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296704_60298119_60298218_60300085_60300232_60300411_60300457_60307576
transcript_12778.nic	chr11	-	1649	8	NIC	ENSMUSG00000042709.16	novel	1813	8	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_7	134.352870745478	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTGGTCTAAGCAGTT	NA	False	NA	0	True	NA	NA	NA	60307927	60291451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296704_60298119_60298218_60300085_60300232_60300411_60300457_60307811
transcript_12792.known	chr11	+	4283	6	FSM	ENSMUSG00000018415.15	ENSMUST00000070681.7	4283	6	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_3	37.1408131305711	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCCAATTTGTAAGTCAAA	NA	False	NA	27	True	AATAAA	-18	NA	60308087	60336103	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_60308671_60315599_60315660_60323158_60323267_60327173_60327276_60329268_60329400_60332804
transcript_12801.known	chr11	-	522	3	FSM	ENSMUSG00000042709.16	ENSMUST00000156966.2	522	3	0	0	0	0	multi-exon	FALSE	canonical	3	293	junction_2	53.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATGCTCCCCAAGCCTTC	NA	False	NA	NA	False	NA	NA	NA	60307862	60300040	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_60300232_60300411_60300457_60307576
transcript_12804.known	chr11	+	1788	13	FSM	ENSMUSG00000020537.10	ENSMUST00000018568.4	1788	13	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_10	43.4117879536576	804	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGGGAACTTGTGTTTCT	NA	False	NA	40	True	NA	NA	NA	60345416	60359580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_60345570_60347376_60347538_60350267_60350358_60350853_60350915_60351612_60351704_60352147_60352221_60352339_60352431_60352999_60353098_60353383_60353461_60354959_60355049_60355658_60355718_60358510_60358565_60358889
transcript_12809.known	chr11	-	4060	30	FSM	ENSMUSG00000002812.5	ENSMUST00000002889.5	4060	30	0	0	0	0	multi-exon	TRUE	canonical	3	227	junction_19	35.2603363548522	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGTACTTTTAATATTAAA	NA	False	NA	NA	False	ATTAAA	-26	NA	60618089	60604968	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_60605274_60605414_60605481_60605856_60605963_60606109_60606217_60606286_60606416_60606491_60606553_60606628_60606784_60606917_60607159_60607230_60607371_60607480_60607670_60607962_60608155_60608234_60608340_60608945_60609118_60609407_60609492_60609671_60609747_60609850_60609934_60610518_60610699_60610831_60611045_60611186_60611324_60611463_60611612_60611903_60611989_60612272_60612431_60612507_60612684_60613120_60613225_60613410_60613573_60613825_60613912_60614190_60614272_60615616_60615689_60615983_60616095_60617952
transcript_12810.known	chr11	+	4268	21	FSM	ENSMUSG00000020536.13	ENSMUST00000108719.4	4268	21	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_6	33.7192452465947	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTGCACACATGTGGACA	NA	False	NA	39	True	AATAAA	-24	NA	60590670	60605012	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_60590768_60593609_60593708_60595494_60595577_60595676_60595808_60596792_60596949_60597018_60597182_60597263_60597400_60597577_60597633_60597784_60597940_60598014_60598239_60598406_60598475_60599369_60599524_60599614_60599720_60600260_60600554_60600806_60600955_60601112_60601267_60602161_60602458_60602825_60603091_60603204_60603320_60603447_60603555_60603746
transcript_12813.nic	chr11	+	2637	4	NIC	ENSMUSG00000018599.6	novel	2522	4	NA	NA	-68	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_2	59.6713219785406	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGTGTAATTCTTGCTG	NA	False	NA	14	True	AATAAA	-17	NA	60619155	60623777	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_60619394_60621108_60621262_60621408_60621619_60621741
transcript_12814.known	chr11	+	2522	4	FSM	ENSMUSG00000018599.6	ENSMUST00000018743.5	2522	4	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_2	26.4701089281224	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGTGTAATTCTTGCTG	NA	False	NA	14	True	AATAAA	-17	NA	60619223	60623777	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_60619394_60621108_60621262_60621455_60621619_60621741
transcript_12816.known	chr11	+	716	3	FSM	ENSMUSG00000018599.6	ENSMUST00000154890.2	716	3	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_2	20.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGGCCTTCGAGCGCAAG	NA	False	NA	NA	False	NA	NA	NA	60619268	60621822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_60619394_60621108_60621619_60621741
transcript_12819.known	chr11	-	3741	19	FSM	ENSMUSG00000002814.16	ENSMUST00000002891.11	3741	19	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_8	18.9965071513323	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTGGTGGCATTCAGTC	NA	False	NA	1	True	AATAAA	-16	NA	60668191	60630883	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_60631528_60633261_60633951_60634758_60634882_60636642_60636787_60638691_60638858_60638937_60639052_60639991_60640122_60640229_60640416_60641401_60641610_60643108_60643192_60644712_60644788_60646769_60646871_60647103_60647275_60647430_60647575_60650122_60650232_60652557_60652634_60653293_60653368_60654191_60654252_60667747
transcript_12820.known	chr11	-	3542	18	FSM	ENSMUSG00000002814.16	ENSMUST00000102668.10	3542	18	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_7	18.3744218184581	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTAAGTAGATCTTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	60668091	60632716	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_60633951_60634758_60634882_60636642_60636787_60638691_60638858_60638937_60639052_60639991_60640122_60640229_60640416_60641401_60641610_60643108_60643192_60644712_60644788_60646769_60646871_60647103_60647275_60647430_60647575_60650122_60650232_60652557_60652634_60653293_60653368_60654191_60654252_60667747
transcript_12822.known	chr11	-	2318	18	FSM	ENSMUSG00000002814.16	ENSMUST00000120417.8	2318	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	40.9623001624918	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATACACTCTCTATATCAG	NA	False	NA	NA	False	ATTAAA	-30	NA	60668090	60633059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_60633158_60634845_60634882_60636642_60636787_60638691_60638858_60638937_60639052_60639991_60640122_60640229_60640416_60641401_60641610_60643108_60643192_60644712_60644788_60646769_60646871_60647103_60647275_60647430_60647575_60650122_60650232_60652557_60652634_60653293_60653368_60654191_60654252_60667747
transcript_12825.known	chr11	+	3544	1	FSM	ENSMUSG00000049323.9	ENSMUST00000102667.5	3544	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCTTTTTCAATGGTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	60668349	60671893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_60668300_60671900
transcript_12826.known	chr11	-	2858	12	FSM	ENSMUSG00000020534.15	ENSMUST00000018744.15	2858	12	0	0	0	0	multi-exon	TRUE	canonical	3	983	junction_2	78.1211180853749	1309	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCCTCATATTATTTATT	NA	False	NA	-8	True	AATAAA	-19	NA	60702091	60678929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_60680143_60680421_60680533_60680971_60681089_60683774_60683898_60685661_60685779_60688350_60688564_60689419_60689502_60692253_60692415_60692741_60692858_60695088_60695235_60697771_60697869_60701729
transcript_12831.nnic	chr11	+	1334	7	NNC	ENSMUSG00000042569.14	novel	1553	7	NA	NA	-29	-277	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	85.6536955160462	268	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAACCATGTACAGGTCT	NA	False	NA	34	True	AATAAA	-31	NA	60721427	60748972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_60721587_60734990_60735170_60739926_60740031_60742567_60742785_60743244_60743338_60746525_60746679_60748543
transcript_12841.known	chr11	-	725	3	FSM	ENSMUSG00000043284.13	ENSMUST00000155031.2	725	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	10	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGTCCCGCCTGCCTCTG	7834	False	NA	NA	False	NA	NA	NA	60769613	60755812	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_60756175_60766585_60766874_60769538
transcript_12842.known	chr11	-	1457	2	FSM	ENSMUSG00000043284.13	ENSMUST00000062677.12	1457	2	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_1	0	4866	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGTTCTCTTTTCTGCC	7349	False	NA	-5	True	ATTAAA	-17	NA	60770098	60755277	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_60756175_60769538
transcript_12843.known	chr11	-	4179	3	FSM	ENSMUSG00000018931.4	ENSMUST00000019075.4	4179	3	0	0	0	0	multi-exon	TRUE	canonical	3	156	junction_2	31	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAAAAAAAACAAACCAC	6624	False	NA	NA	False	NA	NA	NA	60804638	60793071	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_60796948_60797707_60797827_60804454
transcript_12847.nnic	chr11	-	906	4	NNC	ENSMUSG00000042549.11	novel	1291	2	NA	NA	-7	5190	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	3.29983164553722	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTGTAATTTTGTTACTG	NA	False	NA	NA	False	NA	NA	NA	60822700	60806552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_60806785_60807034_60807229_60807774_60807946_60822391
transcript_12849.nnic	chr11	-	1064	4	NNC	ENSMUSG00000042549.11	novel	1291	2	NA	NA	-7	5190	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3.29983164553722	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTGTAATTTTGTTACTG	NA	False	NA	NA	False	NA	NA	NA	60822700	60806552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_60806785_60807034_60807387_60807774_60807946_60822391
transcript_1285.known	chr1	-	1705	5	FSM	ENSMUSG00000042111.10	ENSMUST00000042493.10	1705	5	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	5.33853912601566	866	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGCTCTCATTTTATTTT	7204	False	NA	1	True	AATAAA	-23	NA	34478753	34475750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_34476692_34476807_34476940_34477930_34478014_34478123_34478228_34478308
transcript_12851.nnic	chr11	-	1452	3	NNC	ENSMUSG00000042549.11	novel	1291	2	NA	NA	-7	5190	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	2.5	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTGTAATTTTGTTACTG	NA	False	NA	NA	False	NA	NA	NA	60822700	60806552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_60806785_60807034_60807946_60822391
transcript_12854.known	chr11	-	1291	2	FSM	ENSMUSG00000042549.11	ENSMUST00000123544.2	1291	2	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	0	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTATGGGTATAAAATTC	NA	False	NA	NA	False	NA	NA	NA	60822693	60811742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_60812732_60822391
transcript_12858.known	chr11	+	2198	12	FSM	ENSMUSG00000018932.10	ENSMUST00000019076.10	2198	12	0	0	0	0	multi-exon	FALSE	canonical	3	361	junction_6	27.3405217988137	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCAAGCCTGCTCTTTC	NA	False	NA	NA	False	NA	NA	NA	60822858	60843637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_60823098_60832705_60832773_60833130_60833180_60833976_60834091_60834312_60834433_60835490_60835608_60836336_60836389_60837469_60837598_60837936_60838015_60840746_60840887_60841983_60842030_60842589
transcript_1286.nic	chr1	+	1527	15	NIC	ENSMUSG00000026126.16	novel	1559	15	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	5.28426621090905	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGGGCTTTGTTCCAGTGA	400	False	NA	NA	False	AATAAA	-23	NA	34498805	34512865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_34498926_34501782_34501892_34502187_34502265_34502349_34502446_34502546_34502586_34507373_34507443_34508920_34508984_34509280_34509424_34510573_34510641_34510721_34510800_34510892_34510983_34511183_34511273_34511843_34512050_34512415_34512491_34512659
transcript_12860.known	chr11	+	2096	11	FSM	ENSMUSG00000018932.10	ENSMUST00000130269.2	2096	11	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_6	128.562980674843	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCGTGTGAGACTGACTGT	NA	False	NA	NA	False	NA	NA	NA	60822891	60843620	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_60823098_60832705_60832773_60833130_60833180_60833976_60834091_60834312_60834433_60835490_60835608_60837469_60837598_60837936_60838015_60840746_60840887_60841983_60842030_60842589
transcript_12864.known	chr11	+	764	3	FSM	ENSMUSG00000010142.13	ENSMUST00000137832.8	764	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	4.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAGGCAGATAGCTGAGTG	NA	False	NA	NA	False	NA	NA	NA	61033286	61038759	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_61033356_61037666_61037844_61038241
transcript_12865.known	chr11	-	456	1	FSM	ENSMUSG00000082626.2	ENSMUST00000117939.2	456	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTGTTGTGTGCACAAGC	NA	False	NA	NA	False	NA	NA	NA	61097001	61096545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_61096500_61097000
transcript_12867.nic	chr11	+	1572	10	ISM	ENSMUSG00000019102.11	ENSMUST00000019246.4	1729	11	3470	0	3470	0	3prime_fragment	TRUE	canonical	1	1	junction_1	6.02668960992027	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCATGCAATGCTTCTTTT	NA	False	NA	NA	False	AATAAA	-21	NA	61103040	61109247	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_61103220_61104276_61104509_61105010_61105097_61105375_61105585_61106315_61106434_61107104_61107247_61107906_61108074_61108488_61108589_61108816_61108948_61109039
transcript_12869.known	chr11	-	2892	10	FSM	ENSMUSG00000010025.20	ENSMUST00000066277.10	2892	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	34.7499000797924	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCAGGGTGTGTGTGTTT	1333	False	NA	NA	False	AATAAA	-13	NA	61158011	61114242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_61115513_61139687_61139924_61141768_61141869_61144449_61144617_61147564_61147707_61149566_61149685_61153044_61153254_61155071_61155158_61155889_61156122_61157679
transcript_1287.known	chr1	+	1559	15	FSM	ENSMUSG00000026126.16	ENSMUST00000027302.14	1559	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	5.28426621090905	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGGGCTTTGTTCCAGTGA	440	False	NA	NA	False	AATAAA	-23	NA	34498845	34512865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_34498998_34501782_34501892_34502187_34502265_34502349_34502446_34502546_34502586_34507373_34507443_34508920_34508984_34509280_34509424_34510573_34510641_34510721_34510800_34510892_34510983_34511183_34511273_34511843_34512050_34512415_34512491_34512659
transcript_12870.known	chr11	-	3091	10	FSM	ENSMUSG00000010025.20	ENSMUST00000074127.14	3091	10	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	16.3435342295084	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTGTGTGTTAATTTTGA	1333	False	NA	NA	False	AATAAA	-14	NA	61158011	61135678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_61137148_61139687_61139924_61141768_61141869_61144449_61144617_61147564_61147707_61149566_61149685_61153044_61153254_61155071_61155158_61155889_61156122_61157679
transcript_12878.known	chr11	-	2639	17	FSM	ENSMUSG00000010122.15	ENSMUST00000010267.10	2639	17	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_16	9.25675429078681	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGGGCTGTAGATTATTA	NA	False	NA	-1	True	ATTAAA	-18	NA	61268907	61234226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_61235355_61239484_61239558_61240270_61240366_61243487_61243621_61243891_61243962_61250177_61250254_61250345_61250455_61253512_61253581_61253652_61253767_61253848_61253947_61254219_61254318_61258498_61258544_61260076_61260120_61260943_61261093_61262581_61262651_61264180_61264283_61268738
transcript_1288.nic	chr1	+	872	7	ISM	ENSMUSG00000026126.16	ENSMUST00000027302.14	1559	15	11667	0	-1288	0	3prime_fragment	FALSE	canonical	2	6	junction_1	3.74165738677394	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGGGCTTTGTTCCAGTGA	NA	False	NA	NA	False	AATAAA	-23	NA	34510512	34512865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_34510641_34510721_34510800_34510892_34510983_34511183_34511273_34511843_34512050_34512415_34512491_34512659
transcript_12890.known	chr11	-	3019	7	FSM	ENSMUSG00000001034.18	ENSMUST00000079080.13	3019	7	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_5	27.9861076647365	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCGTCATTTTTGGGGT	NA	False	NA	1	True	AATACA	-19	NA	61385122	61379637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383896_61384472_61384781_61384905
transcript_12891.known	chr11	+	1722	6	FSM	ENSMUSG00000042436.13	ENSMUST00000064783.10	1722	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.26491106406735	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAGACTGCTCAGGGAGG	NA	False	NA	NA	False	AATAAA	-14	NA	61376256	61379726	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_61376312_61376546_61376632_61376863_61377019_61377735_61377833_61377904_61378088_61378579
transcript_12895.known	chr11	-	3134	7	FSM	ENSMUSG00000001034.18	ENSMUST00000125840.8	3134	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	86.2491545852286	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCGTCATTTTTGGGGT	NA	False	NA	1	True	AATACA	-19	NA	61385122	61379637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383888_61384349_61384781_61384905
transcript_12896.known	chr11	-	674	1	FSM	ENSMUSG00000060808.5	ENSMUST00000137010.2	674	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCAGTTTTCTGGAGGGC	NA	False	NA	NA	False	AATAAA	-14	NA	61395885	61395211	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_61395200_61395900
transcript_12899.known	chr11	+	817	7	FSM	ENSMUSG00000001039.13	ENSMUST00000102657.10	817	7	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_4	19.5739339144917	2182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGGCCTTCATTTCTTG	NA	False	NA	23	True	AATAAA	-23	NA	61395969	61403757	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_61396098_61397169_61397239_61398453_61398566_61399897_61399995_61400295_61400359_61403197_61403266_61403477
transcript_12900.known	chr11	+	594	6	FSM	ENSMUSG00000001039.13	ENSMUST00000155176.8	594	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	136.509926379	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGGCCTTCATTTCTTG	NA	False	NA	23	True	AATAAA	-23	NA	61396080	61403757	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_61396098_61397169_61397239_61399897_61399995_61400295_61400359_61403197_61403266_61403477
transcript_12903.known	chr11	-	4243	10	FSM	ENSMUSG00000001036.18	ENSMUST00000001063.15	4243	10	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_6	113.072029921715	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTTTTGGCTGTGTCC	NA	False	NA	0	True	TATAAA	-25	NA	61470511	61408074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61425403_61425440_61426096_61426210_61436975_61437738_61470392
transcript_12908.known	chr11	-	4207	9	FSM	ENSMUSG00000001036.18	ENSMUST00000108713.8	4207	9	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_6	30.1330383466387	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTTTTGGCTGTGTCC	NA	False	NA	0	True	TATAAA	-25	NA	61470511	61408074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61426096_61426210_61436975_61437738_61470392
transcript_12914.nic	chr11	-	304	2	ISM	ENSMUSG00000001036.18	ENSMUST00000001063.15	4243	10	-17	29495	-15	5	5prime_fragment	FALSE	canonical	3	295	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACAACTTCATCTATCAGA	NA	False	NA	NA	False	GATAAA	-3	NA	61470528	61437569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_61437738_61470392
transcript_12917.known	chr11	+	1662	5	FSM	ENSMUSG00000004837.3	ENSMUST00000004959.3	1662	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTCTCCCCATATCTGAC	NA	False	NA	NA	False	AATAAA	-22	NA	61544090	61563610	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_61544251_61551047_61551146_61555010_61555134_61560661_61560831_61562498
transcript_1292.nic	chr1	+	613	3	ISM	ENSMUSG00000026126.16	ENSMUST00000027302.14	1559	15	12872	0	-83	0	3prime_fragment	FALSE	canonical	3	11	junction_1	3.5	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGGGCTTTGTTCCAGTGA	NA	False	NA	NA	False	AATAAA	-23	NA	34511717	34512865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_34512050_34512415_34512491_34512659
transcript_12920.known	chr11	+	4778	5	FSM	ENSMUSG00000042377.9	ENSMUST00000093019.6	4778	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	2.38484800354236	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGTGTTGTCATTGAACT	NA	False	NA	NA	False	AATAAA	-28	NA	61575244	61600777	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_61575882_61585935_61586104_61592468_61592594_61593282_61594544_61598190
transcript_12921.nic	chr11	-	1978	13	NIC	ENSMUSG00000020528.15	novel	1837	12	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_11	72.6714447970376	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTATGTGGATAGTTG	196	False	NA	-7	True	AATAAA	-22	NA	61652934	61620479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61646235_61646289_61647020_61647172_61647407_61647504_61652305_61652401_61652779
transcript_1293.known	chr1	+	1040	6	FSM	ENSMUSG00000026124.5	ENSMUST00000027298.5	1040	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	10.3807514178888	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTCCTTGCTTGGCTGGG	NA	False	NA	NA	False	AATAAA	-16	NA	34574728	34583394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_34575037_34575278_34575329_34575430_34575599_34576212_34576328_34576406_34576517_34583105
transcript_12932.known	chr11	-	1771	11	FSM	ENSMUSG00000020528.15	ENSMUST00000168115.8	1771	11	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_10	57.9565354382058	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGTGGATAGTTGTTCT	216	False	NA	-3	True	AATAAA	-26	NA	61652914	61620475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61646235_61646289_61647020_61647172_61652779
transcript_12937.nic	chr11	-	1731	10	NIC	ENSMUSG00000020528.15	novel	1837	12	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_8	77.5972508104078	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTATGTGGATAGTTG	199	False	NA	-7	True	AATAAA	-22	NA	61652931	61620479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61647020_61647172_61652779
transcript_12945.known	chr11	-	1837	12	FSM	ENSMUSG00000020528.15	ENSMUST00000004955.14	1837	12	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_11	44.7137821487915	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTATGTGGATAGTTG	242	False	NA	-7	True	AATAAA	-22	NA	61652888	61620479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61646235_61646289_61647020_61647172_61647407_61647504_61652779
transcript_12946.known	chr11	-	1734	11	FSM	ENSMUSG00000020528.15	ENSMUST00000151966.8	1734	11	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_8	65.5872701063248	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTATGTGGATAGTTG	292	False	NA	-7	True	AATAAA	-22	NA	61652838	61620479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61647020_61647172_61647407_61647504_61652779
transcript_12947.known	chr11	-	5743	27	FSM	ENSMUSG00000004798.15	ENSMUST00000004920.4	5743	27	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_8	4.53666848543571	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTATTTCATATCATGTA	NA	False	NA	NA	False	AATAAA	-22	NA	61745899	61666474	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_61668666_61670499_61670636_61672417_61672576_61672831_61672951_61674362_61674542_61678254_61678464_61682259_61682410_61689888_61689993_61690285_61690477_61690727_61691015_61692308_61692390_61694467_61694614_61698887_61699026_61703543_61703605_61710110_61710283_61715464_61715554_61716667_61716716_61718427_61718511_61720217_61720277_61721415_61721518_61724238_61724313_61725605_61725780_61730935_61730973_61732124_61732158_61741887_61741930_61744091_61744185_61745312
transcript_12952.known	chr11	-	3874	15	FSM	ENSMUSG00000047804.16	ENSMUST00000102650.10	3874	15	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_4	17.9790127081323	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTCTTTGTGCATTTTGT	NA	False	NA	NA	False	TTTAAA	-30	NA	61821078	61762132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_61763848_61768132_61768229_61768799_61768853_61777525_61777609_61781063_61781174_61784205_61784380_61787473_61787619_61791135_61791273_61794732_61794857_61795600_61795686_61800673_61800773_61805849_61806408_61806909_61807093_61813607_61813656_61820814
transcript_12954.known	chr11	+	674	5	FSM	ENSMUSG00000042331.14	ENSMUST00000202744.4	674	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.5108644332213	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGAAAGAGAGCCCAGCC	NA	False	NA	NA	False	NA	NA	NA	61967884	62028910	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_61968063_62019025_62019234_62022655_62022730_62023101_62023281_62028875
transcript_12955.known	chr11	+	2792	3	FSM	ENSMUSG00000042331.14	ENSMUST00000136971.5	2792	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	61847635	61936310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_61847716_61920078_61920249_61933768
transcript_12956.known	chr11	+	1845	2	FSM	ENSMUSG00000018500.3	ENSMUST00000018644.3	1845	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACGCACTGGCTTCTTGCA	8723	False	NA	NA	False	AATAAA	-20	NA	62139809	62157279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_62140263_62155887
transcript_1296.nic	chr1	+	759	3	ISM	ENSMUSG00000026124.5	ENSMUST00000027298.5	1040	6	1239	0	1239	0	3prime_fragment	FALSE	canonical	3	21	junction_1	0.5	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTCCTTGCTTGGCTGGG	NA	False	NA	NA	False	AATAAA	-16	NA	34575967	34583394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_34576328_34576406_34576517_34583105
transcript_12964.nnic	chr11	-	667	3	NIC	ENSMUSG00000014243.6	novel	732	5	NA	NA	-60	0	combination_of_known_splicesites	FALSE	canonical	3	97	junction_2	132	772	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGATCAAGTTATTGAAGT	NA	False	NA	-15	True	AATAAA	-25	NA	62172261	62158049	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_62158433_62159529_62159635_62172082
transcript_12966.known	chr11	-	732	5	FSM	ENSMUSG00000014243.6	ENSMUST00000072916.5	732	5	0	0	0	0	multi-exon	TRUE	canonical	3	218	junction_4	57.8986182909402	1960	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGATCAAGTTATTGAAGT	NA	False	NA	-15	True	AATAAA	-25	NA	62172201	62158049	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_62158433_62159529_62159635_62164537_62164641_62167443_62167466_62172082
transcript_1297.nnic	chr1	+	521	3	NNC	ENSMUSG00000026124.5	novel	1040	6	NA	NA	1362	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	10.5	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTCCTTGCTTGGCTGGG	NA	False	NA	NA	False	AATAAA	-16	NA	34576090	34583394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_34576213_34576406_34576517_34583105
transcript_12971.known	chr11	-	2815	20	FSM	ENSMUSG00000018501.18	ENSMUST00000127471.9	2815	20	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_19	149.401279720997	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCGCAGAGCCGATGGAC	NA	False	NA	NA	False	NA	NA	NA	62348632	62264211	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_62264401_62267460_62267588_62269340_62269481_62272233_62272297_62273986_62274202_62275543_62275672_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62348261
transcript_1298.nic	chr1	+	467	2	ISM	ENSMUSG00000026124.5	ENSMUST00000027298.5	1040	6	1610	0	1610	0	3prime_fragment	FALSE	canonical	3	22	junction_1	0	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTCCTTGCTTGGCTGGG	NA	False	NA	NA	False	AATAAA	-16	NA	34576338	34583394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_34576517_34583105
transcript_12982.known	chr11	+	2174	7	FSM	ENSMUSG00000014245.9	ENSMUST00000014389.6	2174	7	0	0	0	0	multi-exon	TRUE	canonical	3	156	junction_1	58.9736287580211	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGTTTACATAAAGCAGTAT	NA	False	NA	NA	False	GATAAA	-4	NA	62349285	62405243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_62349521_62364194_62364295_62394504_62394596_62398552_62398621_62400645_62400678_62402963_62403098_62403729
transcript_12995.nnic	chr11	+	1280	3	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	53057	-513	at_least_one_novel_splicesite	FALSE	canonical	3	92	junction_1	112	165	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCTGGGCCCACACCTTT	NA	False	NA	25	True	AATAAA	-29	NA	62402490	62404730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_62402636_62402963_62403098_62403729
transcript_13.known	ERCC-00031	+	1122	1	FSM	ERCC-00031A	DQ459431	1122	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1122	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00031_+_0_1100
transcript_1300.known	chr1	+	3279	8	FSM	ENSMUSG00000026123.12	ENSMUST00000027297.11	3279	8	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_4	21.365621823817	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGTCTCATTGTGACTTC	NA	False	NA	18	True	ATTAAA	-18	NA	34889072	34918661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_34889145_34900953_34900999_34902086_34902240_34902551_34902655_34903553_34903594_34905221_34905312_34908380_34908487_34915991
transcript_13002.known	chr11	-	1032	5	FSM	ENSMUSG00000018509.9	ENSMUST00000018653.8	1032	5	0	0	0	0	multi-exon	FALSE	canonical	3	1369	junction_4	69.2639877569867	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTACTATGACATATTTCT	8371	False	NA	-14	True	AATAAA	-19	NA	62430087	62415771	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_62416114_62418317_62418433_62424710_62424781_62427107_62427207_62429681
transcript_13004.known	chr11	-	744	2	FSM	ENSMUSG00000018509.9	ENSMUST00000135497.2	744	2	0	0	0	0	multi-exon	FALSE	canonical	3	1542	junction_1	0	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTATTACTATGACATATT	NA	False	NA	-17	True	AATAAA	-16	NA	62418722	62415774	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_62416114_62418317
transcript_13023.known	chr11	+	890	2	FSM	ENSMUSG00000019505.8	ENSMUST00000136938.2	890	2	0	0	0	0	multi-exon	FALSE	canonical	3	711	junction_1	0	543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGGCAAGACCATCACCTT	NA	False	NA	NA	False	NA	NA	NA	62442501	62443679	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_62442678_62442965
transcript_13024.known	chr11	+	1499	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	0	0	0	0	multi-exon	FALSE	canonical	3	35417	junction_1	0	87288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGTCACTTGTGAAAT	NA	False	NA	25	True	AATAAA	-24	NA	62441996	62444039	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_62442422_62442965
transcript_1304.known	chr1	+	5176	7	FSM	ENSMUSG00000026123.12	ENSMUST00000156687.8	5176	7	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_4	21.2733531808118	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34889056	34913037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_34889145_34900953_34900999_34902086_34902240_34902551_34902655_34903553_34903594_34905221_34905312_34908380
transcript_13041.known	chr11	+	462	5	FSM	ENSMUSG00000086841.2	ENSMUST00000131787.2	462	5	0	0	0	0	multi-exon	FALSE	canonical	3	3662	junction_1	404.852056311932	54920	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGCCAGTGTTTTGGATG	NA	False	NA	NA	False	AATAAA	-18	NA	62493702	62495633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_62493850_62494060_62494109_62494422_62494473_62495228_62495293_62495480
transcript_13042.known	chr11	-	567	4	FSM	ENSMUSG00000046417.15	ENSMUST00000143262.2	567	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	67.1532244613433	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGCAACCGACTGACCCG	5944	False	NA	NA	False	NA	NA	NA	62538875	62496852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_62497073_62500028_62500142_62511259_62511389_62538770
transcript_13043.known	chr11	-	1984	4	FSM	ENSMUSG00000046417.15	ENSMUST00000057194.9	1984	4	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_3	14.7044966667419	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGGACTGTGCTTTATTAG	5470	False	NA	-2	True	AATACA	-17	NA	62539349	62495709	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_62497073_62500028_62500142_62511259_62511389_62538970
transcript_13052.nnic	chr11	+	1551	4	NNC	ENSMUSG00000048497.12	novel	366	3	NA	NA	30	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1.69967317119759	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGAGTCTGTGTCTGGTT	NA	False	NA	2	True	NA	NA	NA	62539519	62557180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_62539683_62550989_62551196_62555495_62556067_62556569
transcript_13055.nnic	chr11	+	1370	4	NNC	ENSMUSG00000048497.12	novel	388	3	NA	NA	-42	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2.16024689946929	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGAGTCTGTGTCTGGTT	NA	False	NA	2	True	NA	NA	NA	62539596	62557180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_62539683_62540272_62540375_62555495_62556067_62556569
transcript_13058.nnic	chr11	+	1347	3	NNC	ENSMUSG00000048497.12	novel	343	2	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	7.5	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGAGTCTGTGTCTGGTT	NA	False	NA	2	True	NA	NA	NA	62539477	62557180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_62539643_62555495_62556067_62556569
transcript_13059.nnic	chr11	+	1381	3	NNC	ENSMUSG00000048497.12	novel	589	2	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	8	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGAGTCTGTGTCTGGTT	NA	False	NA	2	True	NA	NA	NA	62539483	62557180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_62539683_62555495_62556067_62556569
transcript_13063.known	chr11	+	366	3	FSM	ENSMUSG00000048497.12	ENSMUST00000148696.2	366	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAAGGCTAGCTCTGGGGC	NA	False	NA	NA	False	NA	NA	NA	62539642	62555615	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_62539683_62550989_62551196_62555495
transcript_13066.known	chr11	+	343	2	FSM	ENSMUSG00000048497.12	ENSMUST00000062860.5	343	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCGGTCTCTTCGCCCTCA	NA	False	NA	NA	False	NA	NA	NA	62539489	62555685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_62539643_62555495
transcript_13067.known	chr11	+	589	2	FSM	ENSMUSG00000048497.12	ENSMUST00000155759.3	589	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAGTAACAGGACAGACGC	NA	False	NA	NA	False	NA	NA	NA	62539660	62556062	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_62539683_62555495
transcript_13069.known	chr11	+	374	2	FSM	ENSMUSG00000048497.12	ENSMUST00000142112.2	374	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGACGAGGCCAGACGAG	NA	False	NA	NA	False	NA	NA	NA	62539645	62555547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_62539968_62555495
transcript_1307.nnic	chr1	+	786	3	NNC	ENSMUSG00000102531.2	novel	566	2	NA	NA	-4573	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	1.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACATCCTTTGTCAGCAT	NA	False	NA	NA	False	NA	NA	NA	35914352	35920200	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_35914437_35918789_35919054_35919762
transcript_13070.known	chr11	+	1828	2	FSM	ENSMUSG00000048497.12	ENSMUST00000129162.3	1828	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGAGTCTGTGTCTGGTT	NA	False	NA	2	True	NA	NA	NA	62540274	62557180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_62540418_62555495
transcript_13072.known	chr11	-	1605	8	FSM	ENSMUSG00000005267.14	ENSMUST00000150336.8	1605	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.12485826771597	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATATTTCTGAGCAATGCC	NA	False	NA	NA	False	NA	NA	NA	62622711	62591181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_62591453_62596294_62596418_62602975_62603046_62615622_62615710_62616073_62616201_62618375_62618480_62619107_62619712_62622492
transcript_13073.known	chr11	-	1668	7	FSM	ENSMUSG00000047342.18	ENSMUST00000207597.2	1668	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	23.6249632568791	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATCGGAGGGTTCATACT	NA	False	NA	NA	False	NA	NA	NA	62680247	62643402	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_62644509_62646613_62646679_62674497_62674588_62675704_62675820_62678784_62678871_62679755_62679916_62680201
transcript_13074.known	chr11	-	3051	6	FSM	ENSMUSG00000047342.18	ENSMUST00000054654.13	3051	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	11.4262854856686	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCAGGTTTTTAGTTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	62680288	62669212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_62671726_62674497_62674588_62675704_62675820_62678784_62678871_62679755_62679916_62680201
transcript_13077.known	chr11	-	641	5	FSM	ENSMUSG00000047342.18	ENSMUST00000145474.8	641	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	12.1243556529821	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAAACATTTTTTCACTC	NA	False	NA	NA	False	AATAAA	-15	NA	62680235	62674341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_62674588_62675704_62675820_62678784_62678871_62679755_62679916_62680201
transcript_13079.nnic	chr11	-	1647	4	NIC	ENSMUSG00000047342.18	novel	3051	6	NA	NA	-19	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	27.3130005674953	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGGGGTGTGTCTGTGTG	NA	False	NA	-5	True	AATAGA	-16	NA	62680307	62670430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_62671726_62678784_62678871_62679755_62679916_62680201
transcript_1308.known	chr1	+	566	2	FSM	ENSMUSG00000102531.2	ENSMUST00000194261.2	566	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACATCCTTTGTCAGCAT	NA	False	NA	NA	False	NA	NA	NA	35918925	35920200	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_35919054_35919762
transcript_13080.nnic	chr11	-	605	4	NIC	ENSMUSG00000047342.18	novel	641	5	NA	NA	-19	7	combination_of_known_splicesites	FALSE	canonical	3	15	junction_1	20.3960780543711	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTTTTCACTCTCCTCTC	NA	False	NA	NA	False	AATAAA	-22	NA	62680307	62674334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_62674588_62678784_62678871_62679755_62679916_62680201
transcript_13083.known	chr11	+	3906	6	FSM	ENSMUSG00000047821.17	ENSMUST00000055006.12	3906	6	0	0	0	0	multi-exon	TRUE	canonical	3	37	junction_4	2.33238075793812	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTTTTGCTAGTATTTG	NA	False	NA	NA	False	TTTAAA	-5	NA	62711056	62733762	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_62711826_62719928_62720025_62724804_62725039_62727504_62727671_62728060_62728157_62731217
transcript_13084.known	chr11	+	1412	2	FSM	ENSMUSG00000090173.9	ENSMUST00000175804.2	1412	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTAGAGCTTCCTTGAT	NA	False	NA	NA	False	AATAGA	-14	NA	62737953	62742141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_62738622_62741397
transcript_13091.known	chr11	+	1784	7	FSM	ENSMUSG00000014177.11	ENSMUST00000014321.5	1784	7	0	0	0	0	multi-exon	FALSE	canonical	3	376	junction_1	45.7666181111663	2320	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAGATGTGTGGTCCCATT	9241	False	NA	10	True	TATAAA	-18	NA	62770280	62786011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_62770422_62772762_62772846_62774452_62774598_62775901_62775992_62777014_62777147_62782767_62782897_62784947
transcript_13106.known	chr11	+	1800	5	FSM	ENSMUSG00000018217.13	ENSMUST00000018361.10	1800	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.78535710713571	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTCTCTCCCGGGTTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	63022337	63050373	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_63022481_63023950_63024071_63025246_63025347_63041944_63042086_63049077
transcript_13112.known	chr11	-	2915	7	FSM	ENSMUSG00000042148.9	ENSMUST00000049091.9	2915	7	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_1	27.1272720502613	748	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGCGTGTGTCCTGTGT	5007	False	NA	-4	True	AATAAA	-14	NA	63970292	63853452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_63855355_63867069_63867303_63884711_63884783_63936052_63936178_63962343_63962663_63964362_63964497_63970161
transcript_13118.nnic	chr11	-	1453	6	NIC	ENSMUSG00000042148.9	novel	2915	7	NA	NA	-20	-1251	combination_of_known_splicesites	FALSE	canonical	1	3	junction_1	106.914919445323	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAATATTT	4985	False	NA	NA	False	AAGAAA	-39	NA	63970314	63854703	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_63855355_63884711_63884783_63936052_63936178_63962343_63962663_63964362_63964497_63970161
transcript_13125.known	chr11	-	706	3	FSM	ENSMUSG00000042148.9	ENSMUST00000125702.2	706	3	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_2	15.5	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTACACATGATTGTGGA	5005	False	NA	NA	False	NA	NA	NA	63970294	63962223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_63962663_63964362_63964497_63970161
transcript_13127.known	chr11	+	959	3	FSM	ENSMUSG00000087497.8	ENSMUST00000146333.2	959	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGTTTCATGTTTCTTA	4332	False	NA	NA	False	AATAAA	-22	NA	63970407	63974085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_63970604_63970684_63970841_63973478
transcript_13128.known	chr11	+	901	2	FSM	ENSMUSG00000087497.8	ENSMUST00000135037.8	901	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGTTTCATGTTTCTTA	4234	False	NA	NA	False	AATAAA	-22	NA	63970309	63974085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_63970604_63973478
transcript_13132.known	chr11	+	2771	25	FSM	ENSMUSG00000020549.15	ENSMUST00000071891.12	2771	25	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_24	61.5767221304718	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTTGACAACAGTTTGTA	NA	False	NA	10	True	AATAAA	-18	NA	64869863	64892895	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_64870158_64870543_64870595_64870732_64870804_64871433_64871499_64872442_64872501_64873581_64873651_64874419_64874552_64876388_64876448_64878096_64878156_64878233_64878307_64878857_64878971_64880178_64880275_64883046_64883186_64883264_64883351_64885061_64885181_64886131_64886229_64888693_64888833_64889166_64889206_64889333_64889444_64889962_64890063_64890143_64890265_64890511_64890591_64891121_64891267_64891820_64892040_64892657
transcript_13134.known	chr11	+	3329	24	FSM	ENSMUSG00000020549.15	ENSMUST00000140369.2	3329	24	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_13	71.3428581053949	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTCTTGACAACAGTTTG	NA	False	NA	8	True	AATAAA	-16	NA	64869916	64892893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_64870158_64870543_64870595_64870732_64870804_64871433_64871499_64872442_64872501_64873581_64873651_64874419_64874552_64876388_64876448_64878096_64878156_64878233_64878307_64878857_64878971_64880178_64880275_64883046_64883181_64883264_64883351_64885061_64885181_64886131_64886229_64888693_64888833_64889166_64889206_64889333_64889444_64889962_64890063_64890143_64890265_64890511_64890591_64891121_64891267_64891820
transcript_13136.known	chr11	-	3695	11	FSM	ENSMUSG00000033352.12	ENSMUST00000046963.10	3695	11	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_10	28.4703354388388	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTTTCTGGTTCTTTTCT	NA	False	NA	-1	True	ATTAAA	-42	NA	65679123	65579068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_65581631_65582553_65582600_65584247_65584397_65587113_65587192_65597809_65597938_65600757_65600810_65603003_65603124_65610309_65610430_65626017_65626193_65647094_65647198_65678961
transcript_13141.known	chr11	+	2270	7	FSM	ENSMUSG00000018347.17	ENSMUST00000071465.9	2270	7	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_5	5.11262055005932	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTCCTTGTAGCTGCCTT	NA	False	NA	14	True	AATAAA	-20	NA	65698000	65720064	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_65698088_65705190_65705678_65706743_65706952_65707314_65707407_65712755_65712841_65713650_65713765_65718867
transcript_13147.known	chr11	+	4200	2	FSM	ENSMUSG00000048070.5	ENSMUST00000123434.3	4200	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGGTTCAGAAGTGTGTT	NA	False	NA	3	True	AATAAA	-13	NA	66802806	66820702	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_66802969_66816664
transcript_13151.nnic	chr11	-	424	2	NNC	ENSMUSG00000072834.5	novel	731	4	NA	NA	32941	115	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTAAACCCATTTATTTC	NA	False	NA	NA	False	NA	NA	NA	66804971	66796431	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_66796731_66804846
transcript_13152.known	chr11	+	1597	6	FSM	ENSMUSG00000050270.13	ENSMUST00000061786.6	1597	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	4.45421149026402	160	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCAATTACTGGGGAGAAT	3918	False	NA	NA	False	NA	NA	NA	66915979	66926138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_66916098_66916734_66916765_66920791_66920853_66921887_66922012_66923006_66923067_66924934
transcript_13158.known	chr11	-	1531	5	FSM	ENSMUSG00000020910.17	ENSMUST00000146338.8	1531	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	39.9710832978042	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTCATGTGGGCATATAC	NA	False	NA	NA	False	AATAAA	-10	NA	66943420	66928730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_66929272_66931044_66931162_66932218_66932934_66942506_66942605_66943360
transcript_13159.known	chr11	-	1283	5	FSM	ENSMUSG00000020910.17	ENSMUST00000116363.2	1283	5	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_4	11.1579568022107	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTCTGTTTGTGTACAAA	NA	False	NA	2	True	CATAAA	-28	NA	66943396	66928866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_66929272_66931044_66931162_66932306_66932934_66942506_66942605_66943360
transcript_13173.nic	chr11	-	1235	4	NIC	ENSMUSG00000020910.17	novel	1283	5	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_3	43.2229362980145	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTCTGTTTGTGTACAAA	NA	False	NA	2	True	CATAAA	-28	NA	66943446	66928866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_66929272_66931044_66931162_66932306_66932934_66943360
transcript_13178.nic	chr11	+	1798	7	NIC	ENSMUSG00000069844.13	novel	2412	6	NA	NA	-40	-10	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	109.193126564308	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCTTGGTACTTACATGAA	NA	False	NA	4	True	AATAAA	-22	NA	66943455	66956388	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_66943743_66944600_66944692_66946556_66946755_66947340_66947434_66949152_66949269_66954731_66955453_66956096
transcript_13182.known	chr11	+	2186	6	FSM	ENSMUSG00000069844.13	ENSMUST00000108690.10	2186	6	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	119.607023205161	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	66943495	66956157	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_66943743_66944600_66944692_66946541_66946755_66947340_66947434_66949152_66949269_66954731
transcript_13188.nic	chr11	+	727	4	NIC	ENSMUSG00000057003.13	novel	6016	39	NA	NA	18133	0	intron_retention	FALSE	canonical	0	0	junction_1	0.471404520791032	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTTCATTTTTTTTCTTT	NA	False	NA	NA	False	AATAAA	-25	NA	67149555	67151272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_67149823_67149908_67150014_67150115_67150212_67151013
transcript_1319.nnic	chr1	-	2698	3	Intergenic	novelGene_3	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTAGAAGCAAGACATGCCC	NA	False	NA	NA	False	NA	NA	NA	36033723	36024630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr1_-_36024686_36026666_36026768_36031181
transcript_13190.nic	chr11	+	1171	6	ISM	ENSMUSG00000060180.13	ENSMUST00000081911.12	5817	39	17680	20661	17680	-18363	internal_fragment	FALSE	canonical	3	64	junction_4	7.8587530817554	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCATGCATGATTTTCA	NA	False	NA	NA	False	AATAAA	-44	NA	67235608	67241667	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_67235705_67235806_67235895_67238714_67238833_67239625_67239750_67240395_67240533_67241059
transcript_13191.nnic	chr11	+	577	4	NIC	ENSMUSG00000060180.13	novel	6062	40	NA	NA	2696	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	43.8279464370496	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCATGCTCTGCTGTGTT	1065	False	NA	22	True	AATAAA	-18	NA	67258306	67262412	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_67258554_67260134_67260231_67261745_67261881_67262313
transcript_13192.known	chr11	-	2199	14	FSM	ENSMUSG00000020904.12	ENSMUST00000021287.12	2199	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_9	5.45557637738374	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATCTCTTTTCTGTGTCTC	NA	False	NA	NA	False	AATAAA	-18	NA	67856468	67815633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_67816095_67817204_67817317_67818134_67818238_67821554_67821707_67822549_67822696_67826649_67826799_67829742_67829914_67830604_67830706_67836178_67836296_67837123_67837224_67840393_67840523_67844306_67844444_67844797_67844998_67856347
transcript_13197.known	chr11	+	1497	3	FSM	ENSMUSG00000020903.14	ENSMUST00000108675.2	1497	3	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_1	29.5	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAATGGGGGCCTTCTTT	NA	False	NA	NA	False	AATAAA	-15	NA	67857305	67865417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_67857344_67860597_67860698_67864058
transcript_13198.known	chr11	+	1638	5	FSM	ENSMUSG00000020903.14	ENSMUST00000021286.11	1638	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_4	126.986957991756	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATCTCTGGAGTGTTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	67857294	67878433	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_67857344_67860597_67860698_67864058_67864154_67875388_67875500_67877150
transcript_13200.known	chr11	+	2060	1	FSM	ENSMUSG00000048329.8	ENSMUST00000053211.8	2060	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTTTATTTTTTATGTGT	4204	False	NA	NA	False	AGTAAA	-17	NA	68447011	68449071	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_68447000_68449100
transcript_13205.known	chr11	+	1811	2	FSM	ENSMUSG00000020900.16	ENSMUST00000139059.2	1811	2	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCGCCTGCTCTGTTTAC	681	False	NA	-77	True	AATAAA	-18	NA	68705187	68707370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_68705381_68705752
transcript_13206.nic	chr11	-	2421	10	NIC	ENSMUSG00000018736.15	novel	2382	9	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_2	74.7099742130432	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTCGAGATTGCTTTATTT	NA	False	NA	NA	False	AATAAA	-24	NA	68743965	68712259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_68713492_68716995_68717031_68720740_68720893_68724179_68724272_68726975_68727150_68730696_68730834_68732845_68732995_68734646_68734801_68736152_68736251_68743767
transcript_13209.known	chr11	-	2382	9	FSM	ENSMUSG00000018736.15	ENSMUST00000018880.14	2382	9	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_5	15.9530561335438	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTCGAGATTGCTTTATTT	NA	False	NA	NA	False	AATAAA	-24	NA	68743961	68712259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_68713492_68720740_68720893_68724179_68724272_68726975_68727150_68730696_68730834_68732845_68732995_68734646_68734801_68736152_68736251_68743767
transcript_1321.nnic	chr1	-	2035	3	NNC	ENSMUSG00000103708.2	novel	654	3	NA	NA	5371	1273	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	3	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGCATCTAGGTGTCTC	NA	False	NA	NA	False	NA	NA	NA	36044700	36040792	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_36042488_36042894_36043073_36044538
transcript_13216.known	chr11	-	1653	8	FSM	ENSMUSG00000018736.15	ENSMUST00000108672.2	1653	8	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_4	16.3507473460851	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGTGTG	NA	False	NA	NA	False	NA	NA	NA	68743867	68720143	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_68720893_68724179_68724272_68726975_68727150_68730696_68730834_68732845_68732995_68734646_68734801_68736152_68736251_68743767
transcript_13223.known	chr11	+	606	4	FSM	ENSMUSG00000060938.15	ENSMUST00000167436.3	606	4	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	7534.13486886333	6486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCCTGTCTTGTGTGGTGT	NA	False	NA	32	True	ATTAAA	-13	NA	68792460	68795359	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_68792584_68793095_68793269_68794004_68794146_68795190
transcript_13225.known	chr11	+	526	4	FSM	ENSMUSG00000060938.15	ENSMUST00000073471.13	526	4	0	0	0	0	multi-exon	FALSE	canonical	3	13360	junction_1	1585.12172683642	174132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGTCTTGTGTGGTGTT	NA	False	NA	33	True	ATTAAA	-14	NA	68792408	68795360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_68792451_68793095_68793269_68794004_68794146_68795190
transcript_13226.known	chr11	+	657	4	FSM	ENSMUSG00000060938.15	ENSMUST00000101014.9	657	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	6885.97448925471	1600	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCATTAAAGACTGCTTA	NA	False	NA	9	True	AAGAAA	-41	NA	68792435	68795336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_68792639_68793095_68793263_68794004_68794146_68795190
transcript_13227.known	chr11	+	500	3	FSM	ENSMUSG00000060938.15	ENSMUST00000128952.8	500	3	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_1	8462	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGTGTTTTTGAAGGAGG	NA	False	NA	NA	False	NA	NA	NA	68792452	68794145	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_68792639_68793095_68793269_68794004
transcript_1323.known	chr1	-	654	3	FSM	ENSMUSG00000103708.2	ENSMUST00000193725.2	654	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	3	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGTGCCTCTGGCCTCTC	NA	False	NA	NA	False	AATAAA	-39	NA	36050125	36042065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_36042488_36042894_36043073_36050071
transcript_13235.known	chr11	+	1828	5	FSM	ENSMUSG00000018740.15	ENSMUST00000102606.10	1828	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	4.96865172858795	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAAGTGTCTTATGTTTA	5558	False	NA	6	True	CATAAA	-18	NA	68858956	68863342	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_68859864_68861549_68861616_68862009_68862163_68862494_68862630_68862775
transcript_13238.known	chr11	-	820	5	FSM	ENSMUSG00000032892.15	ENSMUST00000038644.5	820	5	0	0	0	0	multi-exon	FALSE	canonical	3	482	junction_2	47.2989164780759	10410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGCCTTCAAATCTA	7236	False	NA	-2	True	AATAAA	-22	NA	68864669	68863309	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_68863568_68863768_68863855_68863942_68864100_68864266_68864384_68864467
transcript_13239.known	chr11	-	967	4	FSM	ENSMUSG00000032892.15	ENSMUST00000132093.8	967	4	0	0	0	0	multi-exon	FALSE	canonical	3	482	junction_1	54.6036221834738	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGCCTTCAAATCTA	7290	False	NA	-2	True	AATAAA	-22	NA	68864615	68863309	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_68863855_68863942_68864100_68864266_68864384_68864467
transcript_13240.known	chr11	-	568	3	FSM	ENSMUSG00000032892.15	ENSMUST00000143444.8	568	3	0	0	0	0	multi-exon	FALSE	canonical	3	482	junction_2	39.5	532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTCTGTGCCTTCAAAT	7736	False	NA	-5	True	AATAAA	-19	NA	68864169	68863312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_68863568_68863768_68863855_68863942
transcript_13241.known	chr11	-	6373	28	FSM	ENSMUSG00000020899.17	ENSMUST00000021282.12	6373	28	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_27	41.3360546031052	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTTTTCCGATGGCCT	NA	False	NA	-11	True	NA	NA	NA	68899286	68876522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_68879100_68879192_68879517_68880796_68880912_68880995_68881088_68881193_68881402_68881498_68881645_68881865_68881986_68882163_68882320_68882510_68882595_68882681_68882863_68883005_68883237_68883480_68883613_68883741_68883865_68884122_68884285_68884391_68884454_68884633_68884791_68885083_68885158_68888489_68888619_68888738_68888871_68890834_68890964_68891070_68891196_68891274_68891416_68891699_68891806_68891932_68892123_68892558_68892665_68893305_68893442_68894521_68894699_68899228
transcript_13244.known	chr11	+	3978	23	FSM	ENSMUSG00000020898.19	ENSMUST00000116359.3	3978	23	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_14	52.8328292942908	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTGTGTTCATCTCTGA	5272	False	NA	18	True	AATAAA	-18	NA	68906922	68927296	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_68906992_68911855_68912020_68913202_68913441_68913534_68913747_68914987_68915133_68916899_68917179_68917276_68917406_68918079_68918313_68918429_68918608_68918689_68918891_68920511_68920639_68921309_68921425_68921516_68921833_68921925_68922016_68922236_68922431_68924008_68924098_68924192_68924368_68924784_68924863_68925460_68925606_68925709_68925775_68926330_68926497_68926592_68926720_68926853
transcript_13246.known	chr11	+	4164	23	FSM	ENSMUSG00000020898.19	ENSMUST00000021278.14	4164	23	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_14	54.4241833704208	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTTCATCTCTGAGGT	5086	False	NA	21	True	AATAAA	-21	NA	68906736	68927299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_68906992_68911855_68912020_68913202_68913441_68913534_68913747_68914987_68915133_68916899_68917179_68917276_68917406_68918079_68918313_68918429_68918608_68918689_68918891_68920511_68920639_68921309_68921425_68921516_68921833_68921925_68922016_68922239_68922431_68924008_68924098_68924192_68924368_68924784_68924863_68925460_68925606_68925709_68925775_68926330_68926497_68926592_68926720_68926853
transcript_13254.known	chr11	+	1831	9	FSM	ENSMUSG00000020897.13	ENSMUST00000108666.8	1831	9	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	202.492592457107	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGTGGTCTGAATAT	NA	False	NA	16	True	AATAAA	-26	NA	68936472	68942490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_68936637_68936760_68936835_68938610_68938714_68938797_68938868_68938999_68939192_68939331_68939471_68939556_68939706_68941127_68941303_68941725
transcript_13259.known	chr11	+	1950	8	FSM	ENSMUSG00000020897.13	ENSMUST00000021277.6	1950	8	0	0	0	0	multi-exon	FALSE	canonical	3	581	junction_1	36.6756327936728	726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGTGGTCTGAATAT	NA	False	NA	16	True	AATAAA	-26	NA	68936477	68942490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_68936835_68938610_68938714_68938797_68938868_68938999_68939192_68939331_68939471_68939556_68939706_68941127_68941303_68941725
transcript_13268.known	chr11	+	1862	1	FSM	ENSMUSG00000045176.4	ENSMUST00000051888.4	1862	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGAGCCTGTTTTTTTGT	NA	False	NA	17	True	ATTAAA	-17	NA	68950542	68952404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_68950500_68952400
transcript_1327.known	chr1	+	425	2	FSM	ENSMUSG00000104201.2	ENSMUST00000192017.2	425	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTGTATGTTGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	36050152	36050975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_36050277_36050674
transcript_13272.known	chr11	+	367	4	FSM	ENSMUSG00000020895.15	ENSMUST00000146646.2	367	4	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_1	173.330769211804	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAATCCGGGTGTAGGGAC	4777	False	NA	NA	False	AAAAAG	-14	NA	68961761	68963642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_68961860_68962199_68962301_68963248_68963346_68963571
transcript_13276.known	chr11	+	779	5	FSM	ENSMUSG00000020895.15	ENSMUST00000075980.12	779	5	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_4	23.6893963620857	1741	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGGCGTATACTATTTTT	4647	False	NA	NA	False	AATAAA	-19	NA	68961631	68963856	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_68961860_68962049_68962118_68962199_68962301_68963248_68963346_68963571
transcript_13277.known	chr11	+	1263	4	FSM	ENSMUSG00000020895.15	ENSMUST00000094081.5	1263	4	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_2	22.0655588845805	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGCAAATAGATATTATTC	4652	False	NA	NA	False	AATAAA	-14	NA	68961636	68964119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_68961860_68962049_68962118_68962199_68962301_68963248
transcript_13278.known	chr11	+	135	1	FSM	ENSMUSG00000064899.3	ENSMUST00000082965.3	135	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTGGCGATCACACTTTT	7268	False	NA	NA	False	NA	NA	NA	68964252	68964387	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_68964300_68964400
transcript_1328.known	chr1	-	9033	41	FSM	ENSMUSG00000037470.15	ENSMUST00000046875.14	9033	41	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_21	76.4630261956719	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTCTGCTTGTTCATTC	NA	False	NA	1	True	AATAAA	-20	NA	36283386	36179107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_36183333_36185112_36185267_36185705_36185823_36189125_36189241_36190714_36190876_36194153_36194337_36195307_36195393_36196480_36196583_36197188_36197278_36199022_36199108_36200756_36200843_36201285_36201445_36202301_36202492_36203524_36203605_36204589_36204693_36209279_36209376_36212515_36212647_36213159_36213292_36213976_36214184_36215313_36215409_36215856_36215881_36216598_36216698_36218639_36218761_36221550_36221716_36223436_36223569_36224913_36225050_36230609_36230696_36231466_36231587_36234930_36235082_36236624_36236717_36240785_36240847_36241859_36241960_36247022_36247124_36249066_36249146_36250470_36250568_36255212_36255388_36260292_36260406_36266564_36266696_36269738_36269822_36273887_36274024_36283150
transcript_13281.known	chr11	+	2205	5	FSM	ENSMUSG00000020894.17	ENSMUST00000021273.13	2205	5	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_4	21.4126131053639	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGTCCAAAATCTTTT	NA	False	NA	18	True	AATAAA	-18	NA	68979315	68983210	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_68979454_68979931_68980053_68980556_68980716_68980801_68980854_68981475
transcript_13284.known	chr11	+	3507	18	FSM	ENSMUSG00000020893.18	ENSMUST00000101004.9	3507	18	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	5.21177798431451	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGGCCCCATTCCCCCT	NA	False	NA	NA	False	NA	NA	NA	68986042	68997284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_68986130_68991334_68991743_68991830_68991930_68992021_68992177_68992276_68992399_68992500_68992703_68992812_68992865_68992989_68993133_68993499_68993579_68993650_68993758_68993929_68994084_68994178_68994288_68994374_68994507_68994667_68994774_68994856_68995029_68995116_68995248_68995459_68995640_68996215
transcript_13287.nic	chr11	+	1720	8	ISM	ENSMUSG00000020892.11	ENSMUST00000021268.9	3019	15	7877	0	-369	0	3prime_fragment	FALSE	canonical	2	6	junction_2	2.49079939630896	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTTTGTTTTGATGATG	3692	False	NA	21	True	AATAAA	-22	NA	69024598	69039941	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_69024908_69024989_69025194_69025282_69025370_69025831_69026002_69026697_69026820_69033011_69033113_69033672_69033844_69039385
transcript_13288.nic	chr11	+	1464	7	ISM	ENSMUSG00000020892.11	ENSMUST00000021268.9	3019	15	8215	0	-31	0	3prime_fragment	FALSE	canonical	2	6	junction_1	2.58198889747161	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTTTGTTTTGATGATG	4030	False	NA	21	True	AATAAA	-22	NA	69024936	69039941	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_69025194_69025282_69025370_69025831_69026002_69026697_69026820_69033011_69033113_69033672_69033844_69039385
transcript_13298.known	chr11	-	3861	19	FSM	ENSMUSG00000032782.20	ENSMUST00000092973.6	3861	19	0	0	0	0	multi-exon	TRUE	canonical	3	88	junction_15	16.162847964421	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGTTTAAGAATGTTTAA	NA	False	NA	NA	False	AATAAA	-25	NA	69214601	69190312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69190817_69191068_69191142_69193677_69193793_69193919_69194091_69195083_69195148_69196312_69196456_69198768_69199028_69200173_69200337_69200803_69200930_69202160_69202295_69205536_69205684_69206015_69206253_69209771_69209871_69210178_69210296_69210683_69210801_69211643_69211801_69212181_69212246_69212674_69212760_69213515
transcript_1330.known	chr1	+	4640	7	FSM	ENSMUSG00000037447.17	ENSMUST00000115032.8	4640	7	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	6.46572158042361	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTTGTTTGCTTTATGG	NA	False	NA	NA	False	AATAAA	-31	NA	36346834	36362072	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_36346918_36355289_36355409_36356284_36356406_36356690_36356744_36357164_36357263_36357568_36357735_36358072
transcript_13301.nic	chr11	-	1570	2	ISM	ENSMUSG00000032782.20	ENSMUST00000092973.6	3861	19	-112	22075	-112	-6370	5prime_fragment	FALSE	canonical	3	93	junction_1	0	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACGAGAAGAAAAAGTGCCCA	NA	False	NA	NA	False	AAGAAA	-3	NA	69214713	69212387	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_69212760_69213515
transcript_13303.known	chr11	+	751	5	FSM	ENSMUSG00000049299.15	ENSMUST00000102602.8	751	5	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_1	97.8682149627753	1634	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCTGAGTGTGAGTTC	NA	False	NA	16	True	AATAAA	-25	NA	69214805	69216619	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69214893_69214983_69215083_69215220_69215292_69215649_69215789_69216264
transcript_1331.known	chr1	+	739	6	FSM	ENSMUSG00000037447.17	ENSMUST00000145179.8	739	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	10	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGGTCAGCAAGGCAGAG	NA	False	NA	NA	False	AAAAAG	-11	NA	36346834	36358295	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_36346918_36355292_36355409_36356690_36356744_36357164_36357263_36357568_36357735_36358072
transcript_13311.known	chr11	+	759	4	FSM	ENSMUSG00000049299.15	ENSMUST00000102601.10	759	4	0	0	0	0	multi-exon	FALSE	canonical	3	452	junction_2	10.7082522694727	1303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCTGAGTGTGAGTTC	NA	False	NA	16	True	AATAAA	-25	NA	69214888	69216619	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69215083_69215220_69215292_69215649_69215789_69216264
transcript_13312.known	chr11	+	628	4	FSM	ENSMUSG00000049299.15	ENSMUST00000060956.13	628	4	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_3	212.171314429323	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCTGAGTGTGAGTTC	NA	False	NA	16	True	AATAAA	-25	NA	69214900	69216619	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69215083_69215220_69215292_69215649_69215789_69216383
transcript_13313.known	chr11	+	635	4	FSM	ENSMUSG00000049299.15	ENSMUST00000108662.2	635	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	220.713992910886	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCTGAGTGTGAGTTC	NA	False	NA	16	True	AATAAA	-25	NA	69214982	69216619	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69215083_69215220_69215292_69215679_69215789_69216264
transcript_13318.known	chr11	+	2538	14	FSM	ENSMUSG00000018470.9	ENSMUST00000018614.3	2538	14	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	7.85293824331087	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGACCACGTCTGAAATTGCA	NA	False	NA	11	True	AATAAA	-20	NA	69217083	69223868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69217750_69218945_69218990_69219076_69219115_69219334_69219415_69220675_69220721_69220808_69220854_69221008_69221053_69221222_69221310_69221565_69221652_69221876_69221998_69222087_69222183_69222285_69222407_69222561_69222651_69222891
transcript_13320.nic	chr11	+	1300	3	NIC	ENSMUSG00000018470.9	novel	2126	13	NA	NA	1023	0	intron_retention	FALSE	canonical	3	49	junction_1	1	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGACCACGTCTGAAATTGCA	NA	False	NA	11	True	AATAAA	-20	NA	69222172	69223868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_69222407_69222561_69222651_69222891
transcript_13321.nnic	chr11	-	584	2	NNC	ENSMUSG00000086900.2	novel	566	2	NA	NA	672	-2	intron_retention	FALSE	canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACGCATCTCCTTAAGATAG	NA	False	NA	NA	False	AATAAA	-14	NA	69222276	69220652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_69221003_69222042
transcript_13322.known	chr11	+	1026	2	FSM	ENSMUSG00000043419.12	ENSMUST00000218008.2	1026	2	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	0	192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGAAAAAAAAAGATGCT	NA	False	NA	NA	False	NA	NA	NA	69231596	69232722	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69231885_69231984
transcript_13325.nnic	chr11	-	484	3	NNC	ENSMUSG00000018474.19	novel	6066	39	NA	NA	-4349	-3300	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	6	82	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAGAAAAAAACAAAAAGGAG	NA	False	NA	NA	False	NA	NA	NA	69264581	69254849	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_69254970_69255517_69255631_69264330
transcript_13329.known	chr11	-	753	4	FSM	ENSMUSG00000044795.13	ENSMUST00000051620.5	753	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	12.1197726417986	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTGGAGTTTGCCTCTT	NA	False	NA	NA	False	NA	NA	NA	69286159	69284437	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69284695_69285453_69285673_69285797_69285875_69285959
transcript_1333.known	chr1	+	5504	5	FSM	ENSMUSG00000037447.17	ENSMUST00000137906.2	5504	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	7.79021822544144	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATTTTCTCTTGAATAG	NA	False	NA	NA	False	AAAAAG	-16	NA	36346834	36363110	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_36346918_36355289_36355409_36357164_36357263_36357568_36357735_36358072
transcript_13331.known	chr11	+	533	3	FSM	ENSMUSG00000059278.10	ENSMUST00000082283.10	533	3	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_1	636	1689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTCTGTGTGTAGGT	NA	False	NA	17	True	ATTAAA	-17	NA	69286639	69287506	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69286799_69286973_69287187_69287345
transcript_13334.known	chr11	-	1582	2	FSM	ENSMUSG00000045377.6	ENSMUST00000050140.6	1582	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGGAAAAAAAAAAAAAAGTC	NA	False	NA	NA	False	AATGAA	-3	NA	69289060	69287344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69288708_69288841
transcript_13335.known	chr11	+	671	3	FSM	ENSMUSG00000059278.10	ENSMUST00000144531.2	671	3	0	0	0	0	multi-exon	FALSE	canonical	3	948	junction_1	166	7541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTCTGTGTGTAGGT	NA	False	NA	17	True	ATTAAA	-17	NA	69286472	69287506	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69286799_69287002_69287187_69287345
transcript_13336.known	chr11	+	404	2	FSM	ENSMUSG00000059278.10	ENSMUST00000124932.2	404	2	0	0	0	0	multi-exon	FALSE	canonical	3	1280	junction_1	0	2915	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTCTGTGTGTAGGT	NA	False	NA	17	True	ATTAAA	-17	NA	69286943	69287506	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69287187_69287345
transcript_13337.known	chr11	+	343	2	FSM	ENSMUSG00000059278.10	ENSMUST00000142126.2	343	2	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGGGCTCTGCGCAAGAG	NA	False	NA	NA	False	NA	NA	NA	69286312	69287150	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69286508_69287002
transcript_13338.nnic	chr11	+	718	3	NNC	ENSMUSG00000085178.2	novel	840	2	NA	NA	-1748	0	intron_retention	FALSE	canonical	1	2	junction_2	2	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACTAACCATGGATGAGAA	NA	False	NA	NA	False	ATTAAA	-16	NA	69290590	69293526	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_69290880_69290995_69291070_69293171
transcript_13346.nnic	chr11	+	981	2	NNC	ENSMUSG00000086591.2	novel	859	2	NA	NA	3741	8	intron_retention	FALSE	canonical	3	26	junction_1	0	251	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAACGATGTCTAGAACT	2314	False	NA	NA	False	AATAAA	-26	NA	69343114	69344510	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_69343301_69343715
transcript_13347.known	chr11	-	3183	5	FSM	ENSMUSG00000003934.6	ENSMUST00000004036.6	3183	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	2.17944947177034	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGAAGGCTGGAAAATGAC	NA	False	NA	1	True	TTTAAA	-7	NA	69451031	69444917	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69447096_69447518_69447624_69447731_69447825_69448025_69448319_69450517
transcript_1335.known	chr1	-	2907	22	FSM	ENSMUSG00000010453.13	ENSMUST00000188961.7	2907	22	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_8	60.2515512921168	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCTGCTGAGCCGGCTGA	NA	False	NA	NA	False	NA	NA	NA	36408252	36376653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_36376733_36382331_36382466_36382753_36382977_36383150_36383261_36383996_36384128_36384465_36384548_36384918_36385111_36386297_36386376_36387605_36387763_36387898_36388100_36388482_36388547_36390713_36390872_36391006_36391082_36392674_36392747_36392852_36392955_36393178_36393296_36393729_36393862_36397120_36397307_36397450_36397542_36404562_36404734_36406830_36407116_36408185
transcript_13352.known	chr11	-	1891	10	FSM	ENSMUSG00000041346.12	ENSMUST00000048139.12	1891	10	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_6	29.7960143162773	494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGTCATTGTGTCTGTT	NA	False	NA	-4	True	TATAAA	-15	NA	69470150	69452584	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69452846_69452947_69453086_69453219_69453324_69453474_69453684_69454129_69454263_69454372_69454464_69454684_69454774_69468451_69468564_69469272_69469372_69469495
transcript_13353.known	chr11	-	985	7	FSM	ENSMUSG00000041346.12	ENSMUST00000155894.2	985	7	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	61.2880267443995	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGTCATTGTGTCTGTTC	NA	False	NA	-3	True	TATAAA	-16	NA	69454748	69452583	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69452846_69452947_69453086_69453219_69453324_69453474_69453684_69454145_69454263_69454372_69454464_69454684
transcript_1336.known	chr1	-	2177	2	FSM	ENSMUSG00000010453.13	ENSMUST00000185614.2	2177	2	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATGAAACTTTAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	36408238	36404991	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_36407116_36408185
transcript_13368.known	chr11	+	1771	11	FSM	ENSMUSG00000059552.14	ENSMUST00000108658.10	1771	11	0	0	0	0	multi-exon	FALSE	canonical	3	1895	junction_3	134.752402575984	3220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGGTTTTGAGAGGTTGA	NA	False	NA	15	True	AATAAA	-16	NA	69471184	69482698	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482175
transcript_13369.known	chr11	+	1822	11	FSM	ENSMUSG00000059552.14	ENSMUST00000108657.4	1822	11	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_10	535.886405873484	1168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTTGAGAGGTTGAT	NA	False	NA	16	True	AATAAA	-17	NA	69471230	69482699	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482079
transcript_13370.known	chr11	+	3275	5	FSM	ENSMUSG00000059552.14	ENSMUST00000147512.2	3275	5	0	0	0	0	multi-exon	FALSE	canonical	3	1895	junction_3	156.088716760694	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAACAAAACAAA	NA	False	NA	NA	False	ATTAAA	-20	NA	69471227	69481331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69479374_69479451
transcript_13371.known	chr11	-	2842	7	FSM	ENSMUSG00000041329.14	ENSMUST00000047889.13	2842	7	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_6	5.18544972870135	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACAGAGCCCTGTGTGTG	NA	False	NA	-7	True	AATAAA	-33	NA	69496655	69490561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69492239_69492350_69492450_69493250_69493308_69493525_69493732_69493832_69493938_69494250_69494380_69496086
transcript_13373.known	chr11	-	1419	8	FSM	ENSMUSG00000005202.3	ENSMUST00000005334.3	1419	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGATTTCATTTATTCAA	NA	False	NA	NA	False	NA	NA	NA	69508731	69505629	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69505943_69506345_69506554_69506857_69506995_69507162_69507323_69507517_69507680_69507967_69508158_69508319_69508412_69508574
transcript_13374.known	chr11	+	800	7	FSM	ENSMUSG00000069835.11	ENSMUST00000092969.2	800	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	2.7938424357067	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTGCAGCCATTTTGAAG	NA	False	NA	NA	False	AATAAA	-34	NA	69512877	69514696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69512942_69513081_69513159_69513318_69513371_69513532_69513617_69513685_69513788_69513937_69513979_69514316
transcript_13377.known	chr11	+	968	6	FSM	ENSMUSG00000069835.11	ENSMUST00000108656.9	968	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	1.72046505340853	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTGCAGCCATTTTGAAG	NA	False	NA	NA	False	AATAAA	-34	NA	69512849	69514696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69513159_69513318_69513371_69513532_69513617_69513685_69513788_69513937_69513979_69514316
transcript_13384.known	chr11	+	1016	4	FSM	ENSMUSG00000069835.11	ENSMUST00000151255.2	1016	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	2.05480466765633	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCTGTGCAGTAAGCGTA	NA	False	NA	NA	False	NA	NA	NA	69512877	69514284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69513159_69513318_69513371_69513532_69513617_69513685
transcript_13386.known	chr11	+	2951	17	FSM	ENSMUSG00000018765.6	ENSMUST00000018909.4	2951	17	0	0	0	0	multi-exon	FALSE	canonical	3	970	junction_6	95.5459436279217	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTTTCCCATGTTGCC	NA	False	NA	12	True	AATAAA	-15	NA	69523815	69544123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69524225_69530215_69530269_69531059_69531154_69532107_69532180_69532266_69532416_69532872_69532967_69534663_69534781_69539630_69539802_69539975_69540055_69540553_69540664_69541288_69541376_69541669_69541899_69542064_69542263_69542348_69542550_69542803_69542900_69543035_69543134_69543429
transcript_13389.nnic	chr11	+	1053	5	NNC	ENSMUSG00000018765.6	novel	2951	17	NA	NA	-37	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	516.404395798487	1304	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTTTCCCATGTTGCC	NA	False	NA	12	True	AATAAA	-15	NA	69523778	69544123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_69523858_69542463_69542550_69542803_69542900_69543035_69543134_69543429
transcript_1339.known	chr1	-	2290	9	FSM	ENSMUSG00000001143.14	ENSMUST00000115011.8	2290	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	79.4618619213016	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTCTGGCTCAGTGGCC	NA	False	NA	-3	True	CATAAA	-21	NA	36484352	36462266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_36463585_36463918_36464039_36467182_36467298_36467380_36467543_36468503_36468537_36477830_36477914_36478689_36478808_36482571_36482691_36484130
transcript_13392.nnic	chr11	+	951	4	NNC	ENSMUSG00000018765.6	novel	2951	17	NA	NA	-59	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	556.054154037376	1308	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTTTCCCATGTTGCC	NA	False	NA	12	True	AATAAA	-15	NA	69523756	69544123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_69523854_69542837_69542900_69543035_69543134_69543429
transcript_13394.nnic	chr11	+	957	4	NNC	ENSMUSG00000018765.6	novel	2951	17	NA	NA	-42	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	556.054154037376	1287	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTTTCCCATGTTGCC	NA	False	NA	12	True	AATAAA	-15	NA	69523773	69544123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_69523877_69542837_69542900_69543035_69543134_69543429
transcript_13395.nnic	chr11	+	966	4	NNC	ENSMUSG00000018765.6	novel	2951	17	NA	NA	-42	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	556.054154037376	1283	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTTTCCCATGTTGCC	NA	False	NA	12	True	AATAAA	-15	NA	69523773	69544123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_69523886_69542837_69542900_69543035_69543134_69543429
transcript_134.known	SIRV1	-	744	3	FSM	SIRV1A	SIRV107	744	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGAGGCGCAAGGTACAT	NA	False	NA	NA	False	GATAAA	-18	NA	11643	10647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV1_-_10792_10882_11243_11403
transcript_13404.known	chr11	+	861	2	FSM	ENSMUSG00000041287.6	ENSMUST00000047373.6	861	2	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	0	262	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATTGTCCCATTTGTAT	NA	False	NA	24	True	ATTAAA	-17	NA	69546139	69547553	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69546726_69547278
transcript_13405.known	chr11	-	1321	7	FSM	ENSMUSG00000018761.15	ENSMUST00000018905.12	1321	7	0	0	0	0	multi-exon	FALSE	canonical	3	557	junction_4	37.1427426738163	4139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTTAGTGTGCATTCT	6761	False	NA	-4	True	AATAAA	-33	NA	69553468	69547522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69548155_69548245_69548357_69548550_69548670_69548761_69548848_69549391_69549525_69549636_69549703_69553294
transcript_13409.known	chr11	-	1230	6	FSM	ENSMUSG00000018774.14	ENSMUST00000018918.12	1230	6	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_5	17.4653943556966	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTTCTTTCCTCATTAA	3250	False	NA	-1	True	AATAAA	-19	NA	69556979	69555038	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69555331_69555576_69555748_69555860_69555940_69556072_69556193_69556328_69556763_69556845
transcript_13411.known	chr11	-	612	5	FSM	ENSMUSG00000018774.14	ENSMUST00000154124.2	612	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	48.9540600971972	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAACAGTTACCTTCCTTCT	3341	False	NA	-94	True	NA	NA	NA	69556888	69555131	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69555331_69555576_69555748_69555860_69555940_69556072_69556193_69556845
transcript_13415.nnic	chr11	-	754	4	NIC	ENSMUSG00000018774.14	novel	1230	6	NA	NA	-78	0	combination_of_known_splicesites	FALSE	canonical	3	9	junction_3	62.8242699033494	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTTCTTTCCTCATTAA	3172	False	NA	-1	True	AATAAA	-19	NA	69557057	69555038	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_69555331_69555576_69555748_69555860_69555940_69556845
transcript_1343.nic	chr1	-	1099	8	NIC	ENSMUSG00000001143.14	novel	705	6	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	59.6068753738756	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGAGAGTTTCTACTCCC	NA	False	NA	-1	True	AATAAA	-16	NA	36484347	36458951	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_36459117_36463918_36464039_36467182_36467298_36467380_36467543_36477830_36477914_36478689_36478808_36482571_36482691_36484130
transcript_13437.known	chr11	-	1774	11	FSM	ENSMUSG00000059796.17	ENSMUST00000163666.3	1774	11	0	0	0	0	multi-exon	TRUE	canonical	3	9657	junction_10	1402.57834362292	36516	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGGCTTCTTGTTTCTT	NA	False	NA	64	True	AATAAA	-19	NA	69563143	69557761	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
transcript_13438.known	chr11	-	1845	10	FSM	ENSMUSG00000059796.17	ENSMUST00000128519.8	1845	10	0	0	0	0	multi-exon	FALSE	canonical	3	9657	junction_9	1461.90417007037	12548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGGCTTCTTGTTTCTT	NA	False	NA	64	True	AATAAA	-19	NA	69563143	69557761	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
transcript_13439.known	chr11	-	3167	7	FSM	ENSMUSG00000059796.17	ENSMUST00000123995.8	3167	7	0	0	0	0	multi-exon	FALSE	canonical	3	9657	junction_6	1712.7377126175	2022	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGGGCTTCTTGTTTCT	NA	False	NA	63	True	AATAAA	-18	NA	69563143	69557762	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559580_69559903_69561574_69561753_69561803_69563104
transcript_13440.known	chr11	-	813	7	FSM	ENSMUSG00000059796.17	ENSMUST00000102589.12	813	7	0	0	0	0	multi-exon	FALSE	canonical	3	9657	junction_6	1495.68305651818	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTCGGATTCTTGTCAAG	NA	False	NA	NA	False	AAGAAA	-14	NA	69563249	69559307	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
transcript_13443.known	chr11	-	2313	11	FSM	ENSMUSG00000005204.13	ENSMUST00000005336.9	2313	11	0	0	0	0	multi-exon	FALSE	canonical	3	762	junction_10	82.7371742326265	1108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAAGTGGTGGTCTTCCTT	8530	False	NA	-5	True	AATAAA	-17	NA	69572672	69563940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69570968_69571677_69572488
transcript_13446.known	chr11	-	2219	11	FSM	ENSMUSG00000005204.13	ENSMUST00000066760.8	2219	11	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_10	281.644616493907	985	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATATGCAAGTGGTGGTC	8292	False	NA	-11	True	AATAAA	-11	NA	69572910	69563946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69570968_69571677_69572814
transcript_13449.known	chr11	-	1470	13	FSM	ENSMUSG00000018752.20	ENSMUST00000174159.8	1470	13	0	0	0	0	multi-exon	TRUE	canonical	3	10	junction_3	8.53871900358726	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGCCCCAAATTCTTTTG	5451	False	NA	-3	True	ATTAAA	-30	NA	69586636	69573873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69574171_69574679_69574819_69575043_69575160_69575310_69575359_69575485_69575565_69575854_69575957_69577782_69577918_69578077_69578203_69584331_69584368_69584446_69584501_69585575_69585652_69586219_69586268_69586421
transcript_13454.known	chr11	-	1435	7	FSM	ENSMUSG00000097328.8	ENSMUST00000181810.8	1435	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	8.13941029804985	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAAGGTACCAGAAAAAAAA	5412	False	NA	NA	False	AATAGA	-6	NA	69586675	69577075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69577918_69578077_69578203_69584331_69584368_69584446_69584501_69585575_69585652_69586219_69586268_69586421
transcript_13455.known	chr11	-	1407	6	FSM	ENSMUSG00000089669.8	ENSMUST00000018896.14	1407	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	9.09065454189081	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTATTGCGTCCAAATTCT	4822	False	NA	NA	False	NA	NA	NA	69576380	69573671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69574171_69574679_69574819_69575043_69575160_69575310_69575359_69575485_69575565_69575854
transcript_1346.known	chr1	-	3378	8	FSM	ENSMUSG00000001143.14	ENSMUST00000125304.8	3378	8	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_1	29.2707278728098	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTTCTTGTCAGAAGTG	NA	False	NA	NA	False	AATAGA	-13	NA	36484352	36461145	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_36463585_36463918_36464039_36467182_36467298_36467380_36467543_36477830_36477914_36478689_36478808_36482571_36482691_36484130
transcript_13462.nnic	chr11	-	1058	3	NNC	ENSMUSG00000097328.8	novel	1435	7	NA	NA	5456	-98	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	19.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGGGTTCAGAGTAACTG	311	False	NA	NA	False	AATAAA	-16	NA	69580891	69577173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_69577918_69578077_69578203_69580702
transcript_13464.known	chr11	-	6740	29	FSM	ENSMUSG00000005198.16	ENSMUST00000058470.16	6740	29	0	0	0	0	multi-exon	FALSE	canonical	2	202	junction_15	57.5883527056204	171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTATGTGTACTGACTG	NA	False	NA	-3	True	AATAAA	-22	NA	69649463	69624822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69626393_69626475_69626626_69626726_69626841_69626964_69627152_69627600_69627805_69628007_69628191_69628273_69628379_69630252_69630354_69630704_69630952_69631082_69631308_69631824_69632031_69632462_69632569_69632666_69632839_69633199_69633384_69633512_69633736_69634079_69634284_69634416_69634512_69634628_69634798_69634876_69635087_69635422_69635634_69635745_69635871_69636394_69636528_69636747_69636969_69637092_69637255_69637523_69637806_69637930_69638105_69638201_69638339_69638806_69638940_69648956
transcript_13466.known	chr11	-	1494	2	FSM	ENSMUSG00000018776.11	ENSMUST00000231829.2	1494	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAACTGGTGTGGAGAGA	9960	False	NA	NA	False	AATAAA	-17	NA	69652670	69650715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69651981_69652441
transcript_13467.known	chr11	+	433	3	FSM	ENSMUSG00000018750.15	ENSMUST00000132528.8	433	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCCTACTAGCTTCAGC	747	False	NA	NA	False	NA	NA	NA	69657274	69666864	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69657464_69666201_69666269_69666687
transcript_13469.known	chr11	-	2155	11	FSM	ENSMUSG00000041189.10	ENSMUST00000045971.9	2155	11	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_10	6.56429737291052	247	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTTTGTCTATTTTTAA	3	True	NA	-2	True	ATTAAA	-24	NA	69686769	69674861	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69675588_69675875_69676024_69676532_69676706_69677706_69677931_69683524_69683735_69684290_69684439_69684709_69684819_69684975_69685086_69685794_69685840_69686420_69686561_69686647
transcript_13477.known	chr11	-	3039	5	FSM	ENSMUSG00000042826.14	ENSMUST00000102585.2	3039	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	2.59807621135332	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGAGTGTTATCTGACATT	3397	False	NA	-4	True	ATTAAA	-15	NA	69692683	69686898	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69689099_69689389_69689589_69690177_69690282_69690491_69690603_69692258
transcript_13478.known	chr11	-	1933	2	FSM	ENSMUSG00000089876.4	ENSMUST00000051025.5	1933	2	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGAATGGAAAGTGTTT	NA	False	NA	-6	True	ATTAAA	-12	NA	69696450	69694428	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69695757_69695845
transcript_13481.known	chr11	+	421	4	FSM	ENSMUSG00000070394.11	ENSMUST00000133967.8	421	4	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_1	597.808404832927	2568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACTTTGGTGTCTTTAT	NA	False	NA	NA	False	ATTAAA	-16	NA	69729339	69730439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69729400_69729745_69729778_69730013_69730095_69730191
transcript_13487.known	chr11	+	953	2	FSM	ENSMUSG00000070394.11	ENSMUST00000139085.2	953	2	0	0	0	0	multi-exon	FALSE	canonical	3	1529	junction_1	0	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAACTTTGGTGTCTTTA	NA	False	NA	NA	False	ATTAAA	-15	NA	69729388	69730438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69730095_69730191
transcript_13488.known	chr11	+	492	4	FSM	ENSMUSG00000070394.11	ENSMUST00000094065.5	492	4	0	0	0	0	multi-exon	FALSE	canonical	3	1210	junction_1	145.470119115767	11533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTGTCTTTATTCATC	NA	False	NA	NA	False	ATTAAA	-21	NA	69729349	69730444	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69729476_69729745_69729778_69730013_69730095_69730191
transcript_13489.known	chr11	+	603	3	FSM	ENSMUSG00000070394.11	ENSMUST00000128281.2	603	3	0	0	0	0	multi-exon	FALSE	canonical	3	1507	junction_1	11	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGTTGAAGCAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	69729463	69730399	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69729778_69730013_69730095_69730191
transcript_13490.known	chr11	-	2778	14	FSM	ENSMUSG00000001583.14	ENSMUST00000001626.10	2778	14	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_11	5.7316726185222	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAGACACAGCCTCCTTC	9080	False	NA	-6	True	AAAAAG	-27	NA	69749556	69741830	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69742542_69742623_69742720_69742800_69743112_69743638_69743719_69743942_69744108_69744406_69744502_69745783_69746058_69746345_69746630_69746736_69746893_69747203_69747396_69747518_69747590_69747737_69747952_69749230_69749336_69749532
transcript_13494.known	chr11	+	2785	8	FSM	ENSMUSG00000019461.13	ENSMUST00000108633.9	2785	8	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	4.6246897303539	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGTGATTATGTGAGGATT	NA	False	NA	NA	False	NA	NA	NA	69737442	69742884	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69737518_69737733_69737902_69738160_69738400_69738482_69738526_69738628_69738850_69739039_69739202_69740837_69741000_69741169
transcript_13497.nnic	chr11	+	1695	8	NNC	ENSMUSG00000019461.13	novel	2785	8	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	22.8963948681705	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGTAGAAGCCGGATGT	NA	False	NA	15	True	TATAAA	-15	NA	69737424	69741862	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_69737518_69737819_69737902_69738160_69738400_69738482_69738526_69738628_69738850_69739039_69739202_69740837_69741000_69741169
transcript_13500.known	chr11	-	1798	8	FSM	ENSMUSG00000001583.14	ENSMUST00000108626.8	1798	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	4.4629998148038	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAGAAAGAAAAGAGG	9080	False	NA	NA	False	NA	NA	NA	69749556	69745305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69746058_69746345_69746630_69746736_69746893_69747203_69747396_69747518_69747590_69747737_69747952_69749230_69749336_69749532
transcript_13510.known	chr11	+	1927	7	FSM	ENSMUSG00000019461.13	ENSMUST00000019605.4	1927	7	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_4	3.33749739908346	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGCCGGATGTGATGGGA	NA	False	NA	22	True	TATAAA	-22	NA	69737501	69741869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69737902_69738160_69738400_69738482_69738526_69738628_69738850_69739039_69739202_69740837_69741000_69741169
transcript_13511.known	chr11	+	1835	8	FSM	ENSMUSG00000019461.13	ENSMUST00000108632.8	1835	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	24.6311566425741	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGTAGAAGCCGGATGT	NA	False	NA	15	True	TATAAA	-15	NA	69737201	69741862	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69737349_69737733_69737902_69738160_69738400_69738482_69738526_69738628_69738850_69739039_69739202_69740837_69741000_69741169
transcript_13512.known	chr11	-	2482	22	FSM	ENSMUSG00000001588.13	ENSMUST00000001631.7	2482	22	0	0	0	0	multi-exon	TRUE	canonical	3	20	junction_20	9.40183800238705	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTTCTTAGTTCATTTA	9573	False	NA	-6	True	ATTAAA	-15	NA	69786365	69772392	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69772552_69772807_69772858_69773207_69773319_69773410_69773521_69774409_69774583_69775147_69775318_69775411_69775507_69775621_69775692_69776218_69776431_69776518_69776643_69777793_69777895_69777981_69778034_69780062_69780173_69780261_69780337_69780443_69780540_69780645_69780691_69780824_69781009_69781259_69781319_69781414_69781469_69781689_69781810_69785425_69785484_69786111
transcript_13516.nic	chr11	-	414	2	ISM	ENSMUSG00000001588.13	ENSMUST00000001631.7	2482	22	-13	12944	-13	-5137	5prime_fragment	FALSE	canonical	3	28	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGGGAATGCGTTAGAGT	9560	False	NA	NA	False	NA	NA	NA	69786378	69785336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_69785484_69786111
transcript_13520.known	chr11	-	1640	9	FSM	ENSMUSG00000018570.18	ENSMUST00000102580.10	1640	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6.57647321898295	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGTGCTGGGAGCTGCG	9726	False	NA	-13	True	AATAAA	-15	NA	69791783	69788188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69788319_69788444_69788581_69788928_69788977_69789077_69789237_69789672_69789919_69790024_69790114_69790342_69790415_69790531_69790637_69791128
transcript_13527.known	chr11	-	1485	8	FSM	ENSMUSG00000018570.18	ENSMUST00000018714.13	1485	8	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_7	3.28260722659316	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGTGCTGGGAGCTGCG	9745	False	NA	-13	True	AATAAA	-15	NA	69791764	69788188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69788319_69788928_69788977_69789077_69789237_69789672_69789919_69790024_69790114_69790342_69790415_69790531_69790637_69791128
transcript_13529.nic	chr11	-	1639	8	NIC	ENSMUSG00000018570.18	novel	1640	9	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_7	5.03457433905888	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGTGCTGGGAGCTGCG	9707	False	NA	-13	True	AATAAA	-15	NA	69791802	69788188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_69788319_69788928_69788977_69789077_69789237_69789672_69789919_69790024_69790114_69790342_69790415_69790531_69790753_69791128
transcript_13538.known	chr11	-	1437	8	FSM	ENSMUSG00000018570.18	ENSMUST00000100969.9	1437	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	8.02546966010751	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCTGCGTGTCCAGACTG	9789	False	NA	-2	True	AATAAA	-26	NA	69791720	69788177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69788319_69788928_69788977_69789077_69789237_69789672_69789919_69790008_69790083_69790342_69790415_69790531_69790637_69791128
transcript_13540.known	chr11	+	1159	11	FSM	ENSMUSG00000023170.15	ENSMUST00000116358.8	1159	11	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	67.5763272159711	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCATGCCTGAGTGCTGTTT	4091	False	NA	11	True	AATAAA	-21	NA	69804875	69807416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69804897_69805098_69805260_69805577_69805688_69805758_69805872_69805964_69806045_69806133_69806217_69806456_69806611_69806690_69806781_69806858_69806939_69807023_69807120_69807245
transcript_13546.known	chr11	+	1220	10	FSM	ENSMUSG00000023170.15	ENSMUST00000057884.6	1220	10	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_9	31.9443961352292	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGCCTGAGTGCTGTTTA	4233	False	NA	12	True	AATAAA	-22	NA	69805017	69807417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69805260_69805577_69805688_69805758_69805872_69805964_69806045_69806133_69806217_69806456_69806611_69806690_69806781_69806858_69806939_69807023_69807120_69807245
transcript_13566.known	chr11	-	1373	7	FSM	ENSMUSG00000078812.11	ENSMUST00000070996.11	1373	7	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_6	9665.3113547021	6483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	9941	False	NA	-15	True	AATAAA	-20	NA	69812212	69807545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69810274_69810305_69811988
transcript_13567.known	chr11	-	1353	7	FSM	ENSMUSG00000078812.11	ENSMUST00000108611.8	1353	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_6	9790.70116658319	6303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	6717	False	NA	-15	True	AATAAA	-20	NA	69811766	69807545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166_69811261_69811626
transcript_13568.known	chr11	-	1281	7	FSM	ENSMUSG00000078812.11	ENSMUST00000164359.8	1281	7	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_6	9789.73126404511	6709	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCAGTTGTTTATTTGTT	6572	False	NA	-9	True	AATAAA	-26	NA	69811911	69807539	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166_69811261_69811849
transcript_1359.known	chr1	-	1513	1	FSM	ENSMUSG00000001143.14	ENSMUST00000193502.2	1513	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAAAGAAAAACAT	NA	False	NA	NA	False	NA	NA	NA	36484338	36482825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_36482800_36484300
transcript_13590.known	chr11	-	1259	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108612.8	1259	6	0	0	0	0	multi-exon	FALSE	canonical	3	1359	junction_5	7943.03597876782	6311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	6717	False	NA	-15	True	AATAAA	-20	NA	69811766	69807545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811626
transcript_13591.known	chr11	-	775	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108608.8	775	6	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_5	8383.38681917994	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTGCTTGTGGTTTAGGT	6593	False	NA	NA	False	NA	NA	NA	69811890	69807912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811867
transcript_1360.known	chr1	-	2174	7	FSM	ENSMUSG00000001143.14	ENSMUST00000001171.13	2174	7	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_4	67.569717082926	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTCTGGCTCAGTGGCC	NA	False	NA	-3	True	CATAAA	-21	NA	36484352	36462266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_36463585_36463918_36464039_36467182_36467298_36467380_36467543_36478689_36478808_36482571_36482691_36484130
transcript_13606.known	chr11	-	1343	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	0	0	0	0	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	49834	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	9941	False	NA	-15	True	AATAAA	-20	NA	69812212	69807545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
transcript_13607.known	chr11	-	1409	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108610.8	1409	6	0	0	0	0	multi-exon	FALSE	canonical	3	855	junction_5	8144.23656336185	6654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	7027	False	NA	-15	True	AATAAA	-20	NA	69811456	69807545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166
transcript_13608.nnic	chr11	+	1198	7	NNC	ENSMUSG00000018554.14	novel	679	3	NA	NA	-1062	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	33.2097709851918	39	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGTTGTCCTGGTCTC	NA	False	NA	11	True	AGTAAA	-14	NA	69829610	69832421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_69829697_69830063_69830154_69830699_69830985_69831153_69831258_69831415_69831594_69831871_69831957_69832051
transcript_13609.known	chr11	-	2524	11	FSM	ENSMUSG00000018566.15	ENSMUST00000018710.13	2524	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	3.57910603363466	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGAGTGTCCTGTGCTGGA	NA	False	NA	2	True	ATTAAA	-40	NA	69838975	69833368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69834399_69834884_69835089_69835612_69835715_69835827_69835933_69836094_69836283_69836388_69836552_69836663_69836780_69836894_69837020_69837111_69837285_69837393_69837511_69838774
transcript_13610.known	chr11	-	1776	10	FSM	ENSMUSG00000018566.15	ENSMUST00000141837.9	1776	10	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	3.19722101554181	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAATGCTATAAGTGGTT	NA	False	NA	NA	False	AATAAA	-24	NA	69838990	69834617	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69835089_69835612_69835715_69835827_69835933_69836094_69836283_69836388_69836552_69836663_69836780_69836894_69837020_69837111_69837285_69837393_69837511_69838774
transcript_13611.known	chr11	+	913	5	FSM	ENSMUSG00000018569.13	ENSMUST00000108597.8	913	5	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_1	50.4727649331796	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTGGGGGGTTACTGGGA	8126	False	NA	-66	True	NA	NA	NA	69855604	69858636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69855747_69856710_69856976_69857768_69857934_69858045_69858131_69858380
transcript_13612.nic	chr11	+	901	5	NIC	ENSMUSG00000018569.13	novel	1335	4	NA	NA	-87	0	combination_of_known_junctions	FALSE	canonical	1	6	junction_1	48.7493589701444	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGTCTTTCCAGGCCGCT	8656	False	NA	6	True	AATAAA	-16	NA	69856134	69858708	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_69856193_69856710_69856976_69857768_69857934_69858045_69858131_69858380
transcript_13613.nnic	chr11	+	662	4	NIC	ENSMUSG00000018569.13	novel	373	3	NA	NA	-113	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	56.9814784722974	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGTCTTTCCAGGCCGCT	8630	False	NA	6	True	AATAAA	-16	NA	69856108	69858708	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_69856193_69857768_69857934_69858045_69858131_69858380
transcript_13614.known	chr11	+	1335	4	FSM	ENSMUSG00000018569.13	ENSMUST00000018713.13	1335	4	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	5.71547606649408	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTTTCCAGGCCGCTTTT	8743	False	NA	9	True	AATAAA	-19	NA	69856221	69858711	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69856976_69857768_69857934_69858045_69858131_69858380
transcript_1362.known	chr1	-	664	4	FSM	ENSMUSG00000079610.10	ENSMUST00000194894.4	664	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	19.6015872373189	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGTACACAGACTAGCTCT	7014	False	NA	NA	False	NA	NA	NA	36586312	36578440	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_36578616_36580904_36581144_36581842_36581947_36586166
transcript_13623.known	chr11	-	899	7	FSM	ENSMUSG00000018565.18	ENSMUST00000142788.8	899	7	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_4	199.487468278085	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGGTAATGCTTAAACAAG	9880	False	NA	2	True	AATAAA	-32	NA	69871098	69859047	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69870655_69870737_69870824_69870886_69871039
transcript_13624.known	chr11	-	1259	7	FSM	ENSMUSG00000018565.18	ENSMUST00000123701.9	1259	7	0	0	0	0	multi-exon	FALSE	canonical	3	523	junction_1	38.6393581727233	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCTCTGGTAATGCTTA	9889	False	NA	-4	True	AATAAA	-26	NA	69871089	69859053	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69865865_69866087_69870655_69870737_69870824
transcript_13625.known	chr11	-	755	5	FSM	ENSMUSG00000018565.18	ENSMUST00000138562.8	755	5	0	0	0	0	multi-exon	FALSE	canonical	3	471	junction_4	39.6042926966257	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCGGATCATCACACAACCC	9891	False	NA	NA	False	NA	NA	NA	69871087	69860340	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69860415_69861386_69861569_69865865_69866087_69870655_69870886_69871039
transcript_13627.known	chr11	+	750	4	FSM	ENSMUSG00000018567.15	ENSMUST00000108592.2	750	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	446.878805345103	188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGAATTGAATTTGCCCTG	5224	False	NA	5	True	AATAAA	-15	NA	69882464	69885766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69882629_69883190_69883270_69883501_69883527_69885284
transcript_1363.known	chr1	-	2646	4	FSM	ENSMUSG00000079610.10	ENSMUST00000207843.2	2646	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	29.9369708257569	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7026	False	NA	NA	False	NA	NA	NA	36586300	36576587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_36578616_36580939_36581144_36581842_36581947_36585990
transcript_13634.known	chr11	+	2006	5	FSM	ENSMUSG00000018572.11	ENSMUST00000018716.10	2006	5	0	0	0	0	multi-exon	FALSE	canonical	3	427	junction_3	63.9193828192982	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCCTTGTCCTATTTGG	2317	False	NA	16	True	AATAAA	-26	NA	69886602	69890835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69886880_69888422_69888455_69888571_69888665_69889126_69889959_69890063
transcript_13636.known	chr11	+	1706	5	FSM	ENSMUSG00000018572.11	ENSMUST00000101526.9	1706	5	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_3	201.26273251648	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCCTTGTCCTATTTGG	2416	False	NA	16	True	AATAAA	-26	NA	69886701	69890835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69886880_69888422_69888455_69888571_69888665_69889327_69889959_69890063
transcript_1364.known	chr1	-	2109	4	FSM	ENSMUSG00000079610.10	ENSMUST00000001172.12	2109	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_3	11.5566238822398	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAATGTGTGGCGCTAAT	6800	False	NA	77	True	NA	NA	NA	36586526	36577174	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_36578616_36580939_36581144_36581842_36581947_36586166
transcript_13642.known	chr11	+	2214	4	FSM	ENSMUSG00000018572.11	ENSMUST00000135814.2	2214	4	0	0	0	0	multi-exon	FALSE	canonical	3	427	junction_2	68.3585319392458	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCCTCCTTGTCCTATT	3649	False	NA	13	True	AATAAA	-23	NA	69887934	69890832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69888455_69888571_69888665_69889126_69889959_69890063
transcript_13643.known	chr11	-	2168	20	FSM	ENSMUSG00000018574.15	ENSMUST00000102574.10	2168	20	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_10	16.9960073525513	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCGTGAATGTCACTGCTC	NA	False	NA	4	True	AATAAA	-21	NA	69906234	69901008	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69901263_69901350_69901427_69901523_69901597_69901674_69901748_69901831_69901905_69901993_69902092_69902170_69902273_69902361_69902425_69902509_69902597_69903011_69903117_69903273_69903473_69903783_69903910_69903997_69904128_69904259_69904405_69905070_69905206_69905304_69905370_69905456_69905530_69905618_69905685_69905942_69906022_69906088
transcript_13645.known	chr11	-	2020	19	FSM	ENSMUSG00000018574.15	ENSMUST00000018718.8	2020	19	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_17	40.1080331229001	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATGGGGGTGATGGAGT	NA	False	NA	-57	True	NA	NA	NA	69906213	69901069	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_69901263_69901350_69901427_69901523_69901597_69901674_69901748_69901831_69901905_69901993_69902092_69902170_69902273_69902361_69902425_69902509_69902597_69903011_69903117_69903273_69903473_69903783_69903910_69903997_69904128_69904259_69904405_69905070_69905206_69905304_69905370_69905456_69905530_69905942_69906022_69906088
transcript_13650.known	chr11	+	2968	15	FSM	ENSMUSG00000020888.17	ENSMUST00000019362.15	2968	15	0	0	0	0	multi-exon	FALSE	canonical	3	488	junction_4	30.5160546571265	448	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCCAAGCCTCTGGCTCC	7135	False	NA	12	True	AATAAA	-16	NA	69891420	69900937	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69891853_69895630_69895701_69895980_69896127_69896262_69896373_69896487_69896624_69896763_69896855_69896961_69897032_69897116_69897257_69897339_69897417_69898278_69898347_69898640_69898770_69898845_69898978_69899106_69899287_69899602_69899822_69899969
transcript_13652.nnic	chr11	+	1190	8	NNC	ENSMUSG00000040963.16	novel	672	5	NA	NA	-1615	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	15.9885162870488	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTGTAGCCTGGTTGTTT	5375	False	NA	NA	False	AAAAAG	-15	NA	69986902	69997013	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_69987005_69987627_69987745_69988004_69988101_69988645_69988718_69988878_69988966_69989053_69989200_69996201_69996309_69996550
transcript_13655.known	chr11	+	672	5	FSM	ENSMUSG00000040963.16	ENSMUST00000179757.2	672	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	4.49305018890286	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAGACGGAACATCACCC	6990	False	NA	NA	False	NA	NA	NA	69988517	69996682	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_69988718_69988878_69988966_69989053_69989200_69996201_69996309_69996550
transcript_13658.nic	chr11	+	1089	4	ISM	ENSMUSG00000040950.14	ENSMUST00000041550.12	1586	10	5809	0	1965	0	3prime_fragment	FALSE	canonical	1	2	junction_3	0.942809041582063	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTCTTAGCTCCATTTCT	129	False	NA	NA	False	NA	NA	NA	70026963	70028376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_70027164_70027266_70027419_70027495_70027603_70027746
transcript_13659.nic	chr11	+	1231	3	ISM	ENSMUSG00000040950.14	ENSMUST00000108584.2	1307	8	1965	-253	1965	0	3prime_fragment	FALSE	canonical	1	4	junction_1	0	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGTCTTAGCTCCATTT	129	False	NA	NA	False	NA	NA	NA	70026963	70028374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_70027164_70027266_70027419_70027495
transcript_13663.known	chr11	-	2531	4	FSM	ENSMUSG00000044367.8	ENSMUST00000060010.3	2531	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	1.24721912892465	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTGATGGTCAAGCTCAG	NA	False	NA	NA	False	NA	NA	NA	70111820	70107614	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70108748_70109418_70110157_70111020_70111165_70111304
transcript_13664.nnic	chr11	-	1877	3	NIC	ENSMUSG00000044367.8	novel	2531	4	NA	NA	-14	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	3.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTGATGGTCAAGCTCAG	NA	False	NA	NA	False	NA	NA	NA	70111904	70107614	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_70108748_70111020_70111165_70111304
transcript_13671.known	chr11	-	516	5	FSM	ENSMUSG00000020831.19	ENSMUST00000138658.9	516	5	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	183.751700672402	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCCTGGACCTGTGGATC	NA	False	NA	NA	False	NA	NA	NA	70128589	70126204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70126295_70126849_70127038_70127713_70127805_70128356_70128452_70128537
transcript_13681.known	chr11	-	779	3	FSM	ENSMUSG00000093989.2	ENSMUST00000125752.3	779	3	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_2	359	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGCTGTCTGTGCTTTCA	NA	False	NA	-1	True	AATAAA	-20	NA	70130606	70128949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70129297_70129763_70129841_70130251
transcript_13683.known	chr11	-	779	5	FSM	ENSMUSG00000020831.19	ENSMUST00000021181.13	779	5	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_1	106.829303096107	2742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128740	70126031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70126295_70126849_70127038_70127702_70127805_70128356_70128452_70128609
transcript_13684.known	chr11	-	778	5	FSM	ENSMUSG00000020831.19	ENSMUST00000102569.10	778	5	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_3	164.364495862093	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128740	70126031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70126291_70126521_70126627_70126849_70127038_70128356_70128452_70128609
transcript_13685.known	chr11	-	880	6	FSM	ENSMUSG00000020831.19	ENSMUST00000108578.9	880	6	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_1	133.830340356737	1191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128740	70126031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70126291_70126521_70126627_70126849_70127038_70127702_70127805_70128356_70128452_70128609
transcript_13686.known	chr11	-	643	4	FSM	ENSMUSG00000020831.19	ENSMUST00000108575.9	643	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	223.35671519393	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128679	70126031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70126295_70126822_70127038_70128356_70128452_70128609
transcript_13687.known	chr11	-	659	4	FSM	ENSMUSG00000020831.19	ENSMUST00000108577.8	659	4	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	221.278607692254	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGGTGCTGCCAGCTGC	NA	False	NA	-14	True	ATTAAA	-13	NA	70128728	70126033	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70126291_70126849_70127038_70128356_70128452_70128609
transcript_13688.known	chr11	-	576	6	FSM	ENSMUSG00000020831.19	ENSMUST00000108576.10	576	6	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	159.443532324143	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTCCACCTCTGACCCTC	NA	False	NA	NA	False	NA	NA	NA	70128630	70126229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70126295_70126521_70126627_70126849_70127038_70127702_70127805_70128356_70128452_70128609
transcript_13689.known	chr11	-	611	3	FSM	ENSMUSG00000093989.2	ENSMUST00000040428.4	611	3	0	0	0	0	multi-exon	FALSE	canonical	3	718	junction_2	4	6787	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGCTGTCTGTGCTTTCA	NA	False	NA	-1	True	AATAAA	-20	NA	70130668	70128949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70129297_70129763_70129841_70130481
transcript_13690.known	chr11	-	465	2	FSM	ENSMUSG00000093989.2	ENSMUST00000141880.2	465	2	0	0	0	0	multi-exon	FALSE	canonical	3	726	junction_1	0	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGCTTGCTGTCTGTGCTT	NA	False	NA	-4	True	AATAAA	-17	NA	70129884	70128952	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70129297_70129763
transcript_13691.known	chr11	-	3001	14	FSM	ENSMUSG00000000320.11	ENSMUST00000000329.9	3001	14	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	3.422860840198	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGACCAGTTCACCAAG	7402	False	NA	NA	False	AATAAA	-18	NA	70146179	70132282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70133391_70133510_70133682_70133802_70133904_70136686_70136809_70137720_70137891_70138085_70138173_70140872_70141083_70142275_70142420_70143223_70143385_70143620_70143725_70143836_70143960_70144072_70144155_70145234_70145437_70145963
transcript_13692.known	chr11	-	2314	8	FSM	ENSMUSG00000000320.11	ENSMUST00000108574.3	2314	8	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_3	2.55550625999976	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCAGCCTCCTCTTGTTTC	7414	False	NA	NA	False	NA	NA	NA	70146167	70139788	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70141083_70142275_70142420_70143223_70143385_70143620_70143725_70143836_70143960_70144072_70144155_70145234_70145437_70145963
transcript_13700.known	chr11	-	2409	14	FSM	ENSMUSG00000018924.7	ENSMUST00000019068.7	2409	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.421325044234743	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATAGAGCATCCAGATATT	NA	False	NA	NA	False	AATAAA	-13	NA	70242857	70234977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70235549_70235645_70235814_70235921_70236023_70236355_70236478_70236642_70236813_70236905_70236993_70237912_70238123_70238914_70239059_70240369_70240531_70240729_70240834_70240954_70241078_70241150_70241233_70241539_70241745_70242696
transcript_13701.known	chr11	-	3435	17	FSM	ENSMUSG00000018921.12	ENSMUST00000019065.10	3435	17	0	0	0	0	multi-exon	FALSE	canonical	3	551	junction_9	48.6591701917532	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCCTGTGCTGCTTTGGCT	NA	False	NA	-27	True	AATAAA	-13	NA	70300854	70283708	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70283849_70284587_70286019_70286127_70286335_70286485_70286542_70287111_70287272_70287381_70287530_70287643_70287761_70287840_70287930_70288275_70288364_70288468_70288599_70288891_70289043_70289306_70289367_70292475_70292548_70292742_70292893_70296452_70296559_70297082_70297148_70300589
transcript_1371.nnic	chr1	-	2403	16	NNC	ENSMUSG00000046337.18	novel	2286	15	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_5	46.2106288879758	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTTCTGGAGTTCCTTC	NA	False	NA	-1	True	ATTAAA	-18	NA	36722262	36601776	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_36602102_36603410_36603564_36603911_36603990_36617599_36617726_36624996_36625085_36639203_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36695891_36696015_36698444_36698507_36699815_36700131_36721948
transcript_13711.known	chr11	-	562	4	FSM	ENSMUSG00000018921.12	ENSMUST00000135148.2	562	4	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_1	310.061284264901	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACTCAGATCTTTTAAGTG	NA	False	NA	NA	False	NA	NA	NA	70300857	70293456	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70293580_70296452_70296559_70297082_70297148_70300589
transcript_13714.nic	chr11	+	1765	15	NIC	ENSMUSG00000060216.16	novel	1777	15	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	65.7627538650745	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAATGTGTATGTGTTCTG	NA	False	NA	14	True	AATAAA	-14	NA	70323467	70331500	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_70323580_70326341_70326399_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70328855_70329144_70329218_70329473_70329612_70330297_70330382_70330487_70330568_70330676_70330732_70330989
transcript_13718.known	chr11	+	1443	16	FSM	ENSMUSG00000060216.16	ENSMUST00000079056.9	1443	16	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_15	82.1467521505804	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTTGGCTTGGTCTGTGC	NA	False	NA	42	True	NA	NA	NA	70323470	70331654	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_70323580_70326367_70326399_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70328855_70329144_70329218_70329473_70329612_70330297_70330382_70330487_70330568_70330643_70330732_70330989_70331102_70331581
transcript_13719.known	chr11	+	1848	15	FSM	ENSMUSG00000060216.16	ENSMUST00000102564.11	1848	15	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_13	22.0579015413562	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGCTATGCCAGTGTTC	NA	False	NA	8	True	AATAAA	-14	NA	70323478	70331620	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_70323580_70326367_70326399_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70328855_70329144_70329218_70329473_70329612_70330297_70330382_70330487_70330568_70330676_70330732_70330989
transcript_13720.known	chr11	+	1352	16	FSM	ENSMUSG00000060216.16	ENSMUST00000102563.2	1352	16	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_15	64.7561580083315	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGAAACTTGGCTTGGTC	NA	False	NA	37	True	AATAAA	-43	NA	70323523	70331649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_70323580_70326367_70326399_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70328855_70329144_70329218_70329473_70329612_70330297_70330382_70330487_70330568_70330676_70330732_70330989_70331102_70331581
transcript_13721.known	chr11	+	1777	15	FSM	ENSMUSG00000060216.16	ENSMUST00000108568.10	1777	15	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_13	60.0347263452324	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAATGTGTATGTGTTCTG	NA	False	NA	14	True	AATAAA	-14	NA	70323462	70331500	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_70323580_70326367_70326399_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70328855_70329144_70329218_70329473_70329612_70330297_70330382_70330487_70330568_70330643_70330732_70330989
transcript_13722.known	chr11	+	902	3	FSM	ENSMUSG00000018923.14	ENSMUST00000019067.8	902	3	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_2	11	867	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAAGAGTCTCTCTCTCGC	NA	False	NA	NA	False	AATAAA	-20	NA	70342744	70344553	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_70342890_70343033_70343165_70343927
transcript_13726.known	chr11	+	445	3	FSM	ENSMUSG00000018923.14	ENSMUST00000151013.8	445	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	58	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGGATGATCCAGAGTGTG	NA	False	NA	NA	False	NA	NA	NA	70342744	70344066	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_70342920_70343033_70343165_70343927
transcript_13728.known	chr11	+	870	2	FSM	ENSMUSG00000018923.14	ENSMUST00000152348.2	870	2	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGTACTTGGGAAGTAGAGG	NA	False	NA	33	True	AATAAA	-43	NA	70342757	70344390	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_70343165_70343927
transcript_1373.known	chr1	-	2286	15	FSM	ENSMUSG00000046337.18	ENSMUST00000170295.8	2286	15	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_5	44.2795502622663	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGGAGTTCCTTCCATC	NA	False	NA	3	True	ATTAAA	-22	NA	36722264	36601772	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_36602102_36603410_36603564_36603911_36603990_36617599_36617726_36624996_36625085_36639203_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36698444_36698507_36699815_36700131_36721948
transcript_13730.nic	chr11	+	1009	7	ISM	ENSMUSG00000040829.15	ENSMUST00000092958.4	2100	12	3273	-112	3273	0	3prime_fragment	FALSE	canonical	0	0	junction_6	0.942809041582063	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTGACTTCACCTTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	70354663	70357028	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_70354823_70355181_70355271_70355358_70355458_70355605_70355760_70355932_70355992_70356164_70356326_70356740
transcript_13731.known	chr11	-	2699	5	FSM	ENSMUSG00000018920.12	ENSMUST00000019064.9	2699	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	7.17635004720366	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTGACTTCTGCAGACTC	7600	False	NA	NA	False	NA	NA	NA	70350810	70344808	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70346271_70346480_70346889_70349570_70349654_70349854_70349994_70350203
transcript_13733.nic	chr11	+	709	2	NIC	ENSMUSG00000040829.15	novel	2649	14	NA	NA	4514	0	intron_retention	FALSE	canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTGACTTCACCTTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	70355904	70357028	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_70356326_70356740
transcript_13734.known	chr11	+	1000	5	FSM	ENSMUSG00000018919.11	ENSMUST00000019063.3	1000	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	5.95818764390649	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAATGTGCCAGTGATGAA	NA	False	NA	NA	False	AATAAA	-20	NA	70396069	70402004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_70396331_70400619_70400701_70401040_70401178_70401394_70401579_70401667
transcript_13736.nnic	chr11	+	772	4	NNC	ENSMUSG00000018919.11	novel	478	4	NA	NA	-37	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	4.96655480858378	68	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAATGTGCCAGTGATGAA	NA	False	NA	NA	False	AATAAA	-20	NA	70400758	70402004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_70400873_70401040_70401178_70401394_70401579_70401667
transcript_13737.known	chr11	+	478	4	FSM	ENSMUSG00000018919.11	ENSMUST00000179986.8	478	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	5.71547606649408	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTGGAAGTCTGAGTGG	NA	False	NA	NA	False	NA	NA	NA	70400795	70401708	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_70400912_70401040_70401178_70401394_70401579_70401667
transcript_13739.nnic	chr11	-	849	3	NNC	ENSMUSG00000020830.4	novel	672	3	NA	NA	-5910	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGCTGTCCCCTTGATTA	NA	False	NA	NA	False	ATTAAA	-16	NA	70411352	70404341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_70404692_70405006_70405123_70410969
transcript_13740.known	chr11	+	794	2	FSM	ENSMUSG00000046811.4	ENSMUST00000179000.2	794	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAGAGACCGACCAGAAAG	NA	False	NA	NA	False	NA	NA	NA	70410464	70411345	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_70410710_70410796
transcript_13741.known	chr11	+	1216	3	FSM	ENSMUSG00000046811.4	ENSMUST00000057685.3	1216	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCCGGCGTTATGTATGAT	NA	False	NA	NA	False	AATAAA	-22	NA	70410021	70411562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_70410305_70410542_70410710_70410796
transcript_13762.known	chr11	+	798	6	FSM	ENSMUSG00000018286.7	ENSMUST00000018430.7	798	6	0	0	0	0	multi-exon	FALSE	canonical	3	5742	junction_5	304.149305440601	45910	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACGTTTCTGTGTGAAGG	NA	False	NA	23	True	AATAAA	-13	NA	70416211	70418475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_70416322_70416710_70416779_70417119_70417252_70417369_70417500_70418004_70418150_70418262
transcript_13763.known	chr11	-	1591	12	FSM	ENSMUSG00000014609.17	ENSMUST00000102556.10	1591	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.445361771415123	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGGGTTGTGTGGTCATG	4609	False	NA	NA	False	AATAAA	-20	NA	70510020	70505708	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70505955_70506033_70506141_70506225_70506413_70506486_70506602_70507780_70507896_70507972_70508174_70508430_70508532_70508980_70509137_70509235_70509346_70509450_70509496_70509578_70509722_70509955
transcript_13764.known	chr11	-	641	3	FSM	ENSMUSG00000014609.17	ENSMUST00000134836.2	641	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACTTGCAGGAGGGGTTG	8106	False	NA	NA	False	AATAAA	-10	NA	70506523	70505718	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70505955_70506033_70506141_70506225
transcript_13777.known	chr11	+	1833	9	FSM	ENSMUSG00000040746.16	ENSMUST00000037534.8	1833	9	0	0	0	0	multi-exon	FALSE	canonical	3	485	junction_5	18.8244355825082	1573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAAGATCATCTTTACAC	9190	False	NA	30	True	AATAAA	-31	NA	70538112	70542247	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589_70541671_70541747
transcript_13810.known	chr11	+	610	2	FSM	ENSMUSG00000040746.16	ENSMUST00000131071.2	610	2	0	0	0	0	multi-exon	FALSE	canonical	3	531	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTAGGTTGAATCTCCAG	9472	False	NA	NA	False	NA	NA	NA	70538394	70539080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_70538779_70538854
transcript_13811.known	chr11	-	1711	8	FSM	ENSMUSG00000014606.15	ENSMUST00000014750.15	1711	8	0	0	0	0	multi-exon	FALSE	canonical	3	687	junction_5	58.5020495018625	2278	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGTGTAAAGTCGTAACT	NA	False	NA	0	True	ATTAAA	-28	NA	70537884	70535021	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70535748_70535864_70535917_70535995_70536096_70536175_70536267_70536355_70536447_70536609_70536817_70536901_70537055_70537593
transcript_13812.known	chr11	+	291	2	FSM	ENSMUSG00000040746.16	ENSMUST00000152458.2	291	2	0	0	0	0	multi-exon	FALSE	canonical	3	548	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	234	False	NA	NA	False	GATAAA	-41	NA	70540761	70541160	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_70540844_70540951
transcript_13819.known	chr11	-	724	3	FSM	ENSMUSG00000018293.5	ENSMUST00000178254.2	724	3	0	0	0	0	multi-exon	FALSE	canonical	3	1190	junction_2	4423	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGAAAATTTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	70545447	70542764	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70543048_70543612_70543781_70545174
transcript_13823.known	chr11	-	861	3	FSM	ENSMUSG00000018293.5	ENSMUST00000018437.3	861	3	0	0	0	0	multi-exon	FALSE	canonical	3	9692	junction_2	172	20168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGACCTGTGTTGGTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	70545470	70542675	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70543048_70543612_70543806_70545174
transcript_13824.known	chr11	-	608	2	FSM	ENSMUSG00000018293.5	ENSMUST00000108549.2	608	2	0	0	0	0	multi-exon	FALSE	canonical	3	9692	junction_1	0	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTACCTCTTAAGTCCCTT	NA	False	NA	NA	False	ACTAAA	-6	NA	70545424	70543447	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70543806_70545174
transcript_13825.nnic	chr11	-	259	3	Fusion	ENSMUSG00000018293.5_ENSMUSG00000087523.2	novel	357	2	NA	NA	-474	229	multi-exon	FALSE	canonical	2	4	junction_1	16.5	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCCCGCAGAGCAGCCCCA	NA	False	NA	NA	False	NA	NA	NA	70545944	70545337	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr11_-_70545404_70545609_70545723_70545864
transcript_13826.nnic	chr11	-	236	3	Fusion	ENSMUSG00000018293.5_ENSMUSG00000087523.2	novel	357	2	NA	NA	-474	220	multi-exon	FALSE	canonical	0	0	junction_1	18.5	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCAGCAACAGCCCGCAGA	NA	False	NA	NA	False	NA	NA	NA	70545944	70545346	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr11_-_70545404_70545623_70545723_70545864
transcript_13828.known	chr11	-	357	2	FSM	ENSMUSG00000087523.2	ENSMUST00000131642.2	357	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCTGGCCCGGCGGGGGGG	NA	False	NA	NA	False	TTTAAA	-23	NA	70547319	70545566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70545723_70547118
transcript_13830.nnic	chr11	+	1671	12	NNC	ENSMUSG00000060600.16	novel	1461	11	NA	NA	-1418	0	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_1	16.078320705043	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCATGCTGTGTTCCTTA	5695	False	NA	10	True	AATAAA	-13	NA	70546609	70553336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_70546896_70548697_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
transcript_13835.known	chr11	+	1454	12	FSM	ENSMUSG00000060600.16	ENSMUST00000072841.12	1454	12	0	0	0	0	multi-exon	FALSE	canonical	2	23	junction_1	14.3486688414174	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGCTGTGTTCCTTAGGA	7113	False	NA	13	True	AATAAA	-16	NA	70548027	70553339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_70548094_70548697_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
transcript_13836.known	chr11	+	1564	12	FSM	ENSMUSG00000060600.16	ENSMUST00000108548.8	1564	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	19.1466718079752	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGCTGTGTTCCTTAGGA	7115	False	NA	13	True	AATAAA	-16	NA	70548029	70553339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_70548094_70548585_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
transcript_13840.known	chr11	-	1159	7	FSM	ENSMUSG00000018287.13	ENSMUST00000018431.13	1159	7	0	0	0	0	multi-exon	FALSE	canonical	3	730	junction_3	39.5179284207392	5412	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAATGTGGATACTAGTCC	NA	False	NA	-9	True	AATAAA	-33	NA	70560242	70554596	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70555047_70555145_70555303_70555403_70555494_70555608_70555694_70555813_70555903_70556122_70556191_70560022
transcript_13842.known	chr11	-	1189	7	FSM	ENSMUSG00000057054.12	ENSMUST00000126114.9	1189	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	4.61880215351701	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGCGAGGTAGTGATGG	NA	False	NA	NA	False	ATTAAA	-21	NA	70590981	70579186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70579576_70579810_70579971_70580571_70580766_70581008_70581049_70581264_70581379_70586689_70586775_70590774
transcript_13843.known	chr11	-	1150	7	FSM	ENSMUSG00000057054.12	ENSMUST00000108541.9	1150	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	4.41273409829124	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGCGAGGTAGTGATGG	NA	False	NA	NA	False	ATTAAA	-21	NA	70590981	70579186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70579576_70579810_70579971_70580571_70580766_70581008_70581049_70581264_70581379_70586689_70586775_70590813
transcript_13844.known	chr11	-	1080	7	FSM	ENSMUSG00000057054.12	ENSMUST00000108542.8	1080	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	4.07226390762354	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGCGAGGTAGTGATGG	NA	False	NA	NA	False	ATTAAA	-21	NA	70590981	70579186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70579576_70579810_70579971_70580571_70580766_70581008_70581049_70581264_70581379_70586689_70586775_70590883
transcript_13849.known	chr11	-	1218	7	FSM	ENSMUSG00000057054.12	ENSMUST00000073625.8	1218	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	4.61880215351701	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGCGAGGTAGTGATGG	NA	False	NA	NA	False	ATTAAA	-21	NA	70590981	70579186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70579576_70579810_70579971_70580571_70580766_70581008_70581049_70581264_70581379_70586689_70586775_70590745
transcript_1385.nnic	chr1	-	1831	11	NNC	ENSMUSG00000046337.18	novel	1659	10	NA	NA	2	51	at_least_one_novel_splicesite	FALSE	canonical	3	62	junction_8	39.9335698379196	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGTCTTATGCAATTAGC	NA	False	NA	NA	False	AGTAAA	-2	NA	36722262	36639005	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36695891_36696015_36698444_36698507_36699815_36700131_36721948
transcript_13850.known	chr11	+	2061	2	FSM	ENSMUSG00000043602.6	ENSMUST00000060444.6	2061	2	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTCCTCTGGCCTTTCCTT	922	False	NA	18	True	ATTAAA	-26	NA	70655034	70663754	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_70655376_70662034
transcript_13854.known	chr11	-	2389	17	FSM	ENSMUSG00000040667.12	ENSMUST00000108530.2	2389	17	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_6	121.230008016786	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGAATAAATTTTTATTC	NA	False	NA	-29	True	AATAAA	-19	NA	70860780	70833927	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835797_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
transcript_13855.known	chr11	-	2453	17	FSM	ENSMUSG00000040667.12	ENSMUST00000108531.8	2453	17	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_6	132.716744893024	489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGCTTTACAATTAAAGT	NA	False	NA	1	True	AATAAA	-31	NA	70860799	70833897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835812_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
transcript_13860.known	chr11	-	1976	9	FSM	ENSMUSG00000040667.12	ENSMUST00000138634.8	1976	9	0	0	0	0	multi-exon	FALSE	canonical	3	678	junction_3	66.9976678698595	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGAACCTGTGATTCTGAC	NA	False	NA	NA	False	AATAAA	-10	NA	70860787	70840390	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
transcript_13862.known	chr11	+	1264	5	FSM	ENSMUSG00000020817.17	ENSMUST00000179114.8	1264	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_4	19.8179211826064	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCTGGCCCTCCTTTTTC	NA	False	NA	NA	False	NA	NA	NA	70735617	70784947	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_70735835_70765571_70765701_70775590_70775795_70777836_70777998_70784394
transcript_13865.known	chr11	+	474	1	FSM	ENSMUSG00000081968.2	ENSMUST00000119375.2	474	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGTCCAGAGGCTAATT	5798	False	NA	NA	False	NA	NA	NA	70770253	70770727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_70770300_70770700
transcript_13866.known	chr11	+	5408	18	FSM	ENSMUSG00000020817.17	ENSMUST00000076270.13	5408	18	0	0	0	0	multi-exon	TRUE	canonical	3	115	junction_10	23.0000752217816	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTGAATAAATAAATTTATT	NA	False	NA	NA	False	AATAAA	-18	NA	70735603	70833931	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_70735835_70765571_70765701_70775590_70775795_70777836_70777998_70784394_70784515_70791297_70791434_70795430_70795610_70799211_70799344_70808140_70808609_70810002_70810108_70811677_70811795_70813968_70814068_70816597_70816739_70825230_70825421_70825952_70826009_70828349_70828449_70830705_70830823_70831207
transcript_13870.known	chr11	+	1100	7	FSM	ENSMUSG00000018449.13	ENSMUST00000018593.10	1100	7	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_4	48.3922055248111	1601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAACTTTCCTGGAGATT	NA	False	NA	45	True	NA	NA	NA	70861038	70868659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70864627_70864740_70864894_70864959_70865725_70865867_70868483
transcript_13871.known	chr11	+	434	4	FSM	ENSMUSG00000018449.13	ENSMUST00000126815.8	434	4	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	145.669336359975	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGTATTAAAGGCCCTCT	NA	False	NA	NA	False	NA	NA	NA	70861305	70864988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70864894
transcript_13872.known	chr11	+	343	4	FSM	ENSMUSG00000018449.13	ENSMUST00000169965.8	343	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	151.702193641211	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCCCGACCTCACACTTC	NA	False	NA	NA	False	NA	NA	NA	70861332	70868513	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70868483
transcript_13873.known	chr11	+	548	6	FSM	ENSMUSG00000018449.13	ENSMUST00000171254.8	548	6	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	115.373480488369	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCCCGACCTCACACTTC	NA	False	NA	NA	False	NA	NA	NA	70861332	70868513	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70864894_70864959_70865725_70865867_70868483
transcript_13874.known	chr11	+	445	2	FSM	ENSMUSG00000018449.13	ENSMUST00000129540.2	445	2	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTCTTGGTGTTCTGATG	NA	False	NA	13	True	ATTAAA	-14	NA	70865565	70868627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_70865867_70868483
transcript_13877.nnic	chr11	-	1126	6	NNC	ENSMUSG00000018446.9	novel	1175	6	NA	NA	281	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_5	2089.26833125858	920	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAAGTTGAGGTTCTTT	NA	False	NA	-38	True	AATAAA	-20	NA	70873552	70868673	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_70869071_70869253_70869377_70869514_70869611_70870835_70870930_70872995_70873147_70873287
transcript_13879.known	chr11	-	1175	6	FSM	ENSMUSG00000018446.9	ENSMUST00000078528.7	1175	6	0	0	0	0	multi-exon	FALSE	canonical	3	4814	junction_4	225.05234946563	929	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTCTTTCGCCCACATCAG	NA	False	NA	-26	True	AATAAA	-32	NA	70873852	70868661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70869071_70869253_70869377_70869514_70869611_70870835_70870930_70872995_70873147_70873550
transcript_13883.known	chr11	-	5184	12	FSM	ENSMUSG00000040620.16	ENSMUST00000108527.8	5184	12	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_7	13.0123907891512	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGGTATCCAGCATTTA	NA	False	NA	2	True	ATTAAA	-30	NA	70895263	70874916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70878254_70879892_70879980_70882933_70883138_70883484_70883613_70884435_70884525_70884682_70884843_70885964_70886077_70886713_70886900_70890195_70890367_70890546_70890775_70892344_70892506_70894942
transcript_13887.known	chr11	-	1466	7	FSM	ENSMUSG00000018442.14	ENSMUST00000171041.8	1466	7	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_6	208.810719712056	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTGTATTTAAGCTTTCG	NA	False	NA	-9	True	AATAAA	-20	NA	70910667	70900758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70901253_70903935_70904027_70904268_70904465_70905375_70905470_70906552_70906627_70909137_70909204_70910216
transcript_13890.known	chr11	+	1416	4	FSM	ENSMUSG00000040599.14	ENSMUST00000164220.8	1416	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	46.3057471835	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTTCTGCTCATTTTTGC	NA	False	NA	NA	False	AATAGA	-17	NA	70910436	70916892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_70910550_70910831_70911016_70915375_70915538_70915935
transcript_13893.known	chr11	+	3003	3	FSM	ENSMUSG00000040599.14	ENSMUST00000048807.12	3003	3	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	24	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGTATTATTGCTTAAT	NA	False	NA	16	True	AATAAA	-37	NA	70910436	70918197	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_70911016_70915375_70915538_70915935
transcript_13897.known	chr11	-	3666	7	FSM	ENSMUSG00000018442.14	ENSMUST00000143850.8	3666	7	0	0	0	0	multi-exon	FALSE	canonical	3	526	junction_4	25.493463214453	437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTATCTTGTATTTTTAA	NA	False	NA	-3	True	NA	NA	NA	70910129	70898267	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70901253_70903935_70904027_70904268_70904465_70905375_70905470_70906552_70906627_70909137_70909204_70909969
transcript_13898.known	chr11	-	1494	2	FSM	ENSMUSG00000018451.8	ENSMUST00000156068.3	1494	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCGTTTGTCCACCAGCTTC	NA	False	NA	1	True	AATAAA	-24	NA	70924339	70922766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_70923236_70923314
transcript_1390.known	chr1	-	1659	10	FSM	ENSMUSG00000046337.18	ENSMUST00000114981.3	1659	10	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_7	27.7328525599353	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAACGCC	NA	False	NA	NA	False	AATACA	-27	NA	36722264	36639056	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36698444_36698507_36699815_36700131_36721948
transcript_13904.known	chr11	+	1513	6	FSM	ENSMUSG00000020808.4	ENSMUST00000021164.4	1513	6	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	92.1316449435263	892	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCATGTTTTTAGATATCT	NA	False	NA	14	True	AATAAA	-18	NA	71933280	71938196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_71933361_71933842_71934164_71935806_71936085_71936504_71936601_71937165_71937220_71937512
transcript_13905.known	chr11	+	747	3	FSM	ENSMUSG00000020808.4	ENSMUST00000133880.2	747	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	91	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTGGAGTCCCTGGTCT	NA	False	NA	NA	False	NA	NA	NA	71933349	71936919	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_71933361_71933842_71934164_71936504
transcript_13906.known	chr11	-	555	2	FSM	ENSMUSG00000020807.16	ENSMUST00000144553.2	555	2	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCACCAGCCGTCCAGAGT	NA	False	NA	NA	False	NA	NA	NA	72093438	72089435	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_72089790_72093237
transcript_13907.nic	chr11	-	784	2	ISM	ENSMUSG00000020807.16	ENSMUST00000108505.2	1495	4	-84	6716	-56	-3481	5prime_fragment	FALSE	canonical	3	10	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTGTGGATACTTGTATG	NA	False	NA	NA	False	AAGAAA	-42	NA	72098341	72092916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_72093381_72098021
transcript_13910.known	chr11	+	981	4	FSM	ENSMUSG00000020803.4	ENSMUST00000021158.4	981	4	0	0	0	0	multi-exon	FALSE	canonical	3	1302	junction_3	85.4959388249264	8549	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTAACTCAGGCAGTTTTC	NA	False	NA	NA	False	ATTAAA	-29	NA	72098372	72100841	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_72098595_72099078_72099161_72099555_72099632_72100240
transcript_13914.known	chr11	+	1427	2	FSM	ENSMUSG00000053574.6	ENSMUST00000124762.2	1427	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAGTCACTTCTTATTC	NA	False	NA	NA	False	AATAAA	-14	NA	72105997	72109270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_72106828_72108673
transcript_13915.known	chr11	-	1161	4	FSM	ENSMUSG00000020801.9	ENSMUST00000021157.9	1161	4	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_2	14.0079342596338	3064	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGATTGCTCCACTTTGA	NA	False	NA	-5	True	AATAAA	-15	NA	72106418	72102549	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_72102904_72104602_72104700_72104963_72105042_72105786
transcript_13916.known	chr11	-	837	3	FSM	ENSMUSG00000020801.9	ENSMUST00000129264.2	837	3	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_1	10.5	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	72105879	72104033	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_72104700_72104963_72105042_72105786
transcript_13917.known	chr11	-	3329	12	FSM	ENSMUSG00000020805.15	ENSMUST00000021161.14	3329	12	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	6.58196885814471	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGTGCCTGGCCTTCCTGG	NA	False	NA	0	True	AATAAA	-23	NA	72157485	72132814	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_72134463_72135951_72136090_72138492_72138655_72141551_72141671_72143083_72143185_72144009_72144229_72148185_72148309_72149783_72149953_72151020_72151209_72152438_72152576_72152848_72152978_72157289
transcript_13921.nic	chr11	-	1043	4	ISM	ENSMUSG00000020805.15	ENSMUST00000137701.3	1746	11	-74	16442	-28	261	5prime_fragment	FALSE	canonical	3	49	junction_1	1.4142135623731	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTGCTAGACTTATTTTC	NA	False	NA	NA	False	ATTAAA	-21	NA	72157513	72150655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_72151209_72152438_72152576_72152848_72152978_72157289
transcript_13924.nnic	chr11	-	906	3	NIC	ENSMUSG00000020805.15	novel	1746	11	NA	NA	-28	261	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	25	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTGCTAGACTTATTTTC	NA	False	NA	NA	False	ATTAAA	-21	NA	72157513	72150655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_72151209_72152848_72152978_72157289
transcript_13925.known	chr11	+	1359	2	FSM	ENSMUSG00000086951.2	ENSMUST00000154739.2	1359	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTAAATGCCTGAATCCAT	NA	False	NA	NA	False	TATAAA	-12	NA	72157669	72159383	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_72158352_72158706
transcript_13952.known	chr11	+	672	3	FSM	ENSMUSG00000040483.16	ENSMUST00000151440.8	672	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	2.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTCGGCTATCTGGTTTG	NA	False	NA	NA	False	NA	NA	NA	72192454	72199887	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_72192536_72194152_72194289_72199432
transcript_13953.known	chr11	+	2597	6	FSM	ENSMUSG00000040483.16	ENSMUST00000146233.8	2597	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	2.24499443206436	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGAGCTGTGTCTTTCACG	NA	False	NA	8	True	NA	NA	NA	72192455	72204559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_72192536_72194152_72194289_72195491_72195688_72197389_72197479_72199432_72199751_72202781
transcript_13957.nnic	chr11	-	1022	6	NNC	ENSMUSG00000020799.17	novel	1403	8	NA	NA	4469	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_5	10.6320270880016	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTAGCACAGAGCTCTCA	NA	False	NA	-1	True	ATTAAA	-17	NA	72247653	72235547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_72235798_72236411_72236609_72242653_72242877_72245524_72245669_72246035_72246165_72247574
transcript_13958.nic	chr11	-	1364	6	ISM	ENSMUSG00000020799.17	ENSMUST00000108502.8	1403	8	3391	0	3391	0	3prime_fragment	FALSE	canonical	3	33	junction_5	9.09065454189081	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTAGCACAGAGCTCTCA	NA	False	NA	-1	True	ATTAAA	-17	NA	72248731	72235547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_72235798_72236411_72236609_72242653_72242877_72245524_72245669_72246035_72246165_72248310
transcript_13962.nnic	chr11	-	878	5	NNC	ENSMUSG00000020799.17	novel	1403	8	NA	NA	4469	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_3	17.8518206354422	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTAGCACAGAGCTCTCA	NA	False	NA	-1	True	ATTAAA	-17	NA	72247653	72235547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_72235798_72236411_72236609_72242653_72242877_72246035_72246165_72247574
transcript_13964.nnic	chr11	-	561	3	NNC	ENSMUSG00000020799.17	novel	1403	8	NA	NA	15261	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	26	73	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTAGCACAGAGCTCTCA	NA	False	NA	-1	True	ATTAAA	-17	NA	72236861	72235547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_72235798_72236411_72236609_72236747
transcript_13967.known	chr11	-	1397	8	FSM	ENSMUSG00000020799.17	ENSMUST00000108503.9	1397	8	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_6	18.5681315754731	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTAGCACAGAGCTCTCA	NA	False	NA	-1	True	ATTAAA	-17	NA	72252699	72235547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_72235798_72236411_72236609_72242653_72242877_72245524_72245669_72246035_72246165_72248310_72248477_72250504_72250712_72252618
transcript_13972.known	chr11	+	1818	4	FSM	ENSMUSG00000040471.18	ENSMUST00000076443.10	1818	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0.942809041582063	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAAGAGTCTGAGTGCC	NA	False	NA	NA	False	AATAAA	-14	NA	72326351	72329226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_72326591_72327264_72327468_72327544_72327659_72327964
transcript_13973.known	chr11	+	874	2	FSM	ENSMUSG00000040471.18	ENSMUST00000108499.2	874	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCTCCTCCTCATCTCCT	NA	False	NA	NA	False	NA	NA	NA	72326359	72328607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_72326591_72327964
transcript_13974.known	chr11	+	4358	26	FSM	ENSMUSG00000040463.17	ENSMUST00000045633.6	4358	26	0	0	0	0	multi-exon	FALSE	canonical	3	2354	junction_12	204.057066527969	536	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACACTTGGACCTGGTTC	NA	False	NA	19	True	AATAAA	-32	NA	72332180	72342594	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
transcript_1398.nic	chr1	-	1348	2	ISM	ENSMUSG00000046337.18	ENSMUST00000114981.3	1659	10	2	60040	2	-60040	5prime_fragment	FALSE	canonical	3	139	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGAATACCCTGATAATG	NA	False	NA	NA	False	NA	NA	NA	36722262	36699096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_36700131_36721948
transcript_13987.known	chr11	-	2080	12	FSM	ENSMUSG00000020798.15	ENSMUST00000092940.13	2080	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_10	5.71210111723818	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTCAGAGCTTCTTAGAC	NA	False	NA	NA	False	ATTAAA	-24	NA	72441332	72388980	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_72389301_72390180_72390353_72390463_72390563_72395881_72395948_72420359_72420550_72427353_72427507_72427996_72428146_72429149_72429217_72429860_72430013_72431240_72431378_72436713_72436780_72440823
transcript_13992.nic	chr11	-	1371	8	ISM	ENSMUSG00000020798.15	ENSMUST00000021154.7	1804	11	11751	0	11751	0	3prime_fragment	FALSE	canonical	1	2	junction_5	5.11101251999952	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAGATTTCAGAGCTTCT	NA	False	NA	NA	False	ATTAAA	-19	NA	72429376	72388985	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_72389301_72390180_72390353_72390463_72390563_72395881_72395948_72420359_72420550_72427353_72427507_72427996_72428146_72429149
transcript_13994.nnic	chr11	-	1181	7	NIC	ENSMUSG00000020798.15	novel	1804	11	NA	NA	11751	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	5.67646212197547	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAGATTTCAGAGCTTCT	NA	False	NA	NA	False	ATTAAA	-19	NA	72429376	72388985	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_72389301_72390180_72390353_72390463_72390563_72395881_72395948_72427353_72427507_72427996_72428146_72429149
transcript_14.known	ERCC-00034	+	1003	1	FSM	ERCC-00034A	DQ855001	1003	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00034_+_0_1000
transcript_14001.known	chr11	-	801	1	FSM	ENSMUSG00000081675.2	ENSMUST00000120676.2	801	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACATTAAGTTTTCTGT	NA	False	NA	NA	False	AAAAAG	-36	NA	72464156	72463355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_72463400_72464200
transcript_14004.known	chr11	+	3931	7	FSM	ENSMUSG00000020794.14	ENSMUST00000138247.8	3931	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	366.180017963236	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGAGCTATTTTGGTTTT	NA	False	NA	11	True	AATAAA	-20	NA	72498108	72577307	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_72498462_72536362_72536479_72553896_72554000_72563785_72563884_72568530_72568710_72570194_72570319_72574349
transcript_14009.known	chr11	+	3815	6	FSM	ENSMUSG00000020794.14	ENSMUST00000021148.13	3815	6	0	0	0	0	multi-exon	FALSE	canonical	3	783	junction_5	11.0453610171873	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGAGCTATTTTGGTTTT	NA	False	NA	11	True	AATAAA	-20	NA	72498108	72577307	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_72498462_72553896_72554000_72563785_72563884_72568530_72568710_72570194_72570319_72574349
transcript_14013.nnic	chr11	+	1690	6	NNC	ENSMUSG00000020794.14	novel	3815	6	NA	NA	581	-1869	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	315.78689016487	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCAAGTTGTTGGCTTTT	NA	False	NA	NA	False	AATATA	-16	NA	72498725	72575438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_72498823_72553896_72554000_72563785_72563884_72568530_72568710_72570194_72570319_72574349
transcript_14015.known	chr11	+	8030	25	FSM	ENSMUSG00000020790.15	ENSMUST00000155998.2	8030	25	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	42.0138659320415	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTACTTGGACTAATGTG	NA	False	NA	NA	False	AATAAA	-25	NA	72580831	72662972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_72580861_72602982_72603176_72605190_72605310_72613453_72613590_72619586_72619711_72621297_72621448_72623073_72623240_72629077_72629283_72630814_72630884_72631227_72631428_72637681_72637780_72640125_72640355_72640905_72641005_72641226_72641381_72642890_72643060_72644425_72644545_72645162_72645320_72646515_72646717_72648118_72648296_72649278_72649427_72650741_72650833_72651065_72651191_72652188_72652336_72655602_72655694_72658338
transcript_14017.known	chr11	-	2393	4	FSM	ENSMUSG00000057778.15	ENSMUST00000079681.6	2393	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	4.02768199119819	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGCTTTTTTTTCTTTTG	NA	False	NA	0	True	AATAAA	-36	NA	72686682	72668057	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_72669779_72673473_72673661_72679902_72680044_72686338
transcript_14018.known	chr11	-	2158	4	FSM	ENSMUSG00000057778.15	ENSMUST00000156294.8	2158	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	3.55902608401044	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCACTGTAACTCCCACAT	NA	False	NA	-17	True	AATAAA	-19	NA	72686968	72668074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_72669779_72673473_72673661_72679902_72680044_72686842
transcript_14020.nic	chr11	+	1511	3	ISM	ENSMUSG00000020788.16	ENSMUST00000021142.8	4593	22	27836	0	6908	0	3prime_fragment	FALSE	canonical	3	82	junction_2	6.5	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGTAGTCTTTTCTGAG	NA	False	NA	22	True	AATAAA	-22	NA	72879830	72883869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_72879914_72880300_72880374_72882514
transcript_14021.known	chr11	+	2486	12	FSM	ENSMUSG00000020787.15	ENSMUST00000021141.14	2486	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.11340442853781	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGTTTTTTGCTTTCCT	8137	False	NA	NA	False	AATAAA	-16	NA	72889928	72906026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_72890278_72898927_72899076_72899292_72899365_72899753_72899824_72900011_72900109_72900411_72900493_72900755_72900898_72903278_72903407_72903733_72903825_72904216_72904283_72904645_72904748_72904886
transcript_14022.known	chr11	+	12106	13	FSM	ENSMUSG00000020783.15	ENSMUST00000021135.5	12106	13	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_10	28.6544305280857	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCATTAAGGCCATGTGGTT	NA	False	NA	4	True	NA	NA	NA	72938608	72980143	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_72938909_72940684_72940751_72944248_72944355_72955813_72955940_72956396_72956526_72957508_72957586_72958528_72958638_72960539_72960640_72961623_72961728_72964051_72964347_72966440_72966596_72968680_72968843_72969766
transcript_14026.nic	chr11	+	2033	11	ISM	ENSMUSG00000020783.15	ENSMUST00000021135.5	12106	13	55	13027	-32	-13027	5prime_fragment	FALSE	canonical	3	251	junction_10	29.380946206683	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTTTCAGTATTTTTTG	NA	False	NA	NA	False	AATAAA	-24	NA	72938663	72967116	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_72938909_72940684_72940751_72944248_72944355_72955813_72955940_72956396_72956526_72957508_72957586_72958528_72958638_72960539_72960640_72961623_72961728_72964051_72964347_72966440
transcript_1403.known	chr1	+	362	4	FSM	ENSMUSG00000061518.12	ENSMUST00000193235.2	362	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3383.70989694251	704	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCTGGCTAGTCTTATGT	NA	False	NA	22	True	AATAAA	-27	NA	36730724	36732466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_36730771_36731338_36731366_36731531_36731632_36732277
transcript_14031.nic	chr11	+	761	5	ISM	ENSMUSG00000005947.12	ENSMUST00000006101.4	3845	31	47769	98	47769	-98	3prime_fragment	FALSE	canonical	3	28	junction_3	3.24037034920393	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCAGTGCCTTTAATGAGC	NA	False	NA	-89	True	ATTAAA	-15	NA	73029177	73038174	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_73029338_73029592_73029689_73031492_73031589_73036366_73036478_73037876
transcript_14032.nic	chr11	+	859	5	ISM	ENSMUSG00000005947.12	ENSMUST00000006101.4	3845	31	47769	0	47769	0	3prime_fragment	FALSE	canonical	3	28	junction_3	3.24037034920393	217	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGTTGTTTGAGACA	NA	False	NA	9	True	ATTAAA	-18	NA	73029177	73038272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_73029338_73029592_73029689_73031492_73031589_73036366_73036478_73037876
transcript_14035.nnic	chr11	+	763	4	NIC	ENSMUSG00000005947.12	novel	3845	31	NA	NA	47769	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	15.369522511198	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGTTGTTTGAGACA	NA	False	NA	9	True	ATTAAA	-18	NA	73029177	73038272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_73029338_73029592_73029689_73036366_73036478_73037876
transcript_14036.nnic	chr11	+	719	4	NIC	ENSMUSG00000005947.12	novel	3845	31	NA	NA	47813	0	combination_of_known_splicesites	FALSE	canonical	1	4	junction_1	12.9614813968157	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGTTGTTTGAGACA	NA	False	NA	9	True	ATTAAA	-18	NA	73029221	73038272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_73029338_73031492_73031589_73036366_73036478_73037876
transcript_14040.nnic	chr11	+	655	3	NIC	ENSMUSG00000005947.12	novel	3845	31	NA	NA	47781	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	16.5	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGTTGTTTGAGACA	NA	False	NA	9	True	ATTAAA	-18	NA	73029189	73038272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_73029338_73036366_73036478_73037876
transcript_14043.known	chr11	-	2810	1	FSM	ENSMUSG00000050107.3	ENSMUST00000052140.3	2810	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTGAGATTTGGCTTAT	NA	False	NA	-7	True	AATAAA	-17	NA	73029120	73026310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_73026300_73029100
transcript_14046.known	chr11	+	2395	13	FSM	ENSMUSG00000005950.15	ENSMUST00000006104.10	2395	13	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	3.62476052848859	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCTGACCTGTGCCCCA	3368	False	NA	12	True	GATAAA	-22	NA	73051246	73063511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_73051560_73055681_73055833_73056365_73056438_73056968_73057045_73057130_73057228_73057387_73057469_73057738_73057878_73058319_73058454_73058704_73058799_73058914_73058981_73061241_73061325_73061908_73062077_73062590
transcript_14048.nic	chr11	+	1548	5	ISM	ENSMUSG00000005950.15	ENSMUST00000006104.10	2395	13	7242	0	7078	0	3prime_fragment	FALSE	canonical	2	6	junction_4	2.9474565306379	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCTGACCTGTGCCCCA	NA	False	NA	12	True	GATAAA	-22	NA	73058488	73063511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_73058799_73058914_73058981_73061241_73061325_73061908_73062077_73062590
transcript_14049.known	chr11	-	563	2	FSM	ENSMUSG00000047260.5	ENSMUST00000108480.2	563	2	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTCTTGCCAGAATTAAC	NA	False	NA	NA	False	TTTAAA	-12	NA	73067828	73067161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_73067578_73067681
transcript_14051.known	chr11	-	1332	2	FSM	ENSMUSG00000047260.5	ENSMUST00000054952.4	1332	2	0	0	0	0	multi-exon	FALSE	canonical	3	946	junction_1	0	3288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTTGCGCATGGAATTTG	NA	False	NA	-27	True	AATAAA	-25	NA	73067863	73066344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_73067578_73067764
transcript_14052.nnic	chr11	+	746	5	NNC	ENSMUSG00000040158.13	novel	1523	4	NA	NA	-41	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	44.3924261558208	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGGTTTCTGTTAGATG	4335	False	NA	NA	False	AATAAA	-16	NA	73068035	73072873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_73068169_73071214_73071335_73071556_73071635_73071913_73072136_73072680
transcript_14055.known	chr11	+	1523	4	FSM	ENSMUSG00000040158.13	ENSMUST00000040687.12	1523	4	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	3.09120616516523	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTCTTTGTCTGGAAACC	4208	False	NA	NA	False	AGTAAA	-16	NA	73067908	73072978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_73068169_73071214_73071335_73071556_73071635_73071913
transcript_14057.known	chr11	-	2570	11	FSM	ENSMUSG00000005949.10	ENSMUST00000006103.9	2570	11	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_10	9.23525852372309	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTCGGAACGTTTACTAGA	4465	False	NA	0	True	ATTAAA	-24	NA	73089868	73074421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_73075878_73076063_73076182_73077114_73077286_73078347_73078468_73078562_73078663_73079255_73079388_73079514_73079619_73082503_73082589_73083880_73083960_73087463_73087544_73089743
transcript_14058.nic	chr11	-	1290	2	ISM	ENSMUSG00000005949.10	ENSMUST00000144658.8	715	4	-18	4239	3	-3837	5prime_fragment	FALSE	canonical	3	46	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGGCCTCAGACCATGAG	4468	False	NA	NA	False	NA	NA	NA	73089865	73086375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_73087544_73089743
transcript_14059.known	chr11	-	2723	12	FSM	ENSMUSG00000005949.10	ENSMUST00000108476.8	2723	12	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_11	20.3534877308514	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTCGGAACGTTTACTAG	4465	False	NA	-1	True	ATTAAA	-23	NA	73089868	73074422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_73075878_73076063_73076182_73077114_73077286_73078347_73078468_73078562_73078663_73079255_73079388_73079514_73079619_73082503_73082589_73083880_73083960_73087463_73087544_73087924_73088079_73089743
transcript_14060.known	chr11	+	2808	7	FSM	ENSMUSG00000005951.14	ENSMUST00000006105.7	2808	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_6	1.34370962471642	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCTTTGATGAACACACAC	4992	False	NA	NA	False	AATAAA	-22	NA	73090285	73115337	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_73090507_73094747_73094890_73104156_73104341_73104880_73105034_73105790_73105967_73108624_73108826_73113606
transcript_14064.nic	chr11	-	1685	7	NIC	ENSMUSG00000020774.10	novel	1746	7	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_5	6.39444203108363	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTAGTGATGACTGTGATA	NA	False	NA	NA	False	ATTAAA	-16	NA	73215462	73195817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_73196460_73199534_73199645_73204335_73204444_73210620_73210715_73212911_73213108_73213904_73214058_73215080
transcript_14065.nic	chr11	-	1438	7	NIC	ENSMUSG00000020774.10	novel	1746	7	NA	NA	-2	-247	combination_of_known_junctions	FALSE	canonical	3	7	junction_5	6.39444203108363	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCAAGTGTGCTTCTGGT	NA	False	NA	NA	False	GATAAA	-42	NA	73215462	73196064	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_73196460_73199534_73199645_73204335_73204444_73210620_73210715_73212911_73213108_73213904_73214058_73215080
transcript_14066.nnic	chr11	-	1087	6	NNC	ENSMUSG00000020774.10	novel	733	5	NA	NA	-33	4421	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	7.31026675299883	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGGAATCCACATATGTGTA	NA	False	NA	NA	False	AATAAA	-24	NA	73215493	73191396	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_73191563_73199534_73199645_73204335_73204444_73210620_73210715_73212911_73213108_73215080
transcript_14067.known	chr11	-	1530	6	FSM	ENSMUSG00000020774.10	ENSMUST00000021119.9	1530	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_5	4.1182520563948	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTAGTGATGACTGTGATA	NA	False	NA	NA	False	ATTAAA	-16	NA	73215460	73195817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_73196460_73199534_73199645_73204335_73204444_73210620_73210715_73212911_73213108_73215080
transcript_14069.known	chr11	-	581	3	FSM	ENSMUSG00000020774.10	ENSMUST00000141898.2	581	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAAAATAGTGATGATGCC	NA	False	NA	NA	False	AATAAA	-15	NA	73215440	73213039	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_73213108_73213904_73214058_73215080
transcript_14070.known	chr11	-	1746	7	FSM	ENSMUSG00000020774.10	ENSMUST00000184572.8	1746	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	7.43116560320265	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTAGTGATGACTGTGATA	NA	False	NA	NA	False	ATTAAA	-16	NA	73220422	73195817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_73196460_73199534_73199645_73204335_73204444_73210620_73210715_73212911_73213108_73215080_73215344_73220089
transcript_14072.known	chr11	+	1274	9	FSM	ENSMUSG00000112920.2	ENSMUST00000092926.11	1274	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	2.3418742493994	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTTTATAAAAGTAAAACT	7171	False	NA	NA	False	NA	NA	NA	73220566	73236870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_73220602_73221913_73222021_73224123_73224253_73226835_73226897_73227020_73227117_73231076_73231411_73234562_73234687_73235471_73235570_73236580
transcript_14073.known	chr11	+	4002	4	FSM	ENSMUSG00000069814.7	ENSMUST00000100866.3	4002	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGATGAGAGTGCCGTTGCCT	NA	False	NA	24	True	AATAAA	-30	NA	74510430	74532342	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_74510673_74520784_74520938_74526066_74526115_74528783
transcript_14074.known	chr11	+	5379	26	FSM	ENSMUSG00000020741.18	ENSMUST00000092915.12	5379	26	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_12	69.5319897601097	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCCAGCCTTTCCTGTGT	NA	False	NA	26	True	AATAAA	-20	NA	74540340	74561673	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_74540521_74547248_74547452_74547993_74548166_74550011_74550156_74550308_74550434_74550519_74550675_74550774_74550901_74551177_74551326_74551489_74551583_74552222_74552918_74554205_74554433_74554609_74554715_74554856_74554958_74555599_74555753_74555832_74555896_74556007_74556253_74556518_74556604_74556748_74556903_74556980_74557121_74557767_74557849_74557925_74558052_74558142_74558265_74558492_74558587_74558672_74558808_74558892_74558967_74560240
transcript_1408.known	chr1	+	865	4	FSM	ENSMUSG00000061518.12	ENSMUST00000193210.6	865	4	0	0	0	0	multi-exon	FALSE	canonical	3	7132	junction_3	70.6588045940962	35297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGGCTAAAAATTCTTTT	NA	False	NA	NA	False	NA	NA	NA	36730564	36732762	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_36730771_36731291_36731366_36731531_36731632_36732277
transcript_14089.known	chr11	-	5803	11	FSM	ENSMUSG00000020745.16	ENSMUST00000021091.15	5803	11	0	0	0	0	multi-exon	FALSE	canonical	3	936	junction_5	79.0964600977819	1287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGTGGGGTTTTTTTC	NA	False	NA	NA	False	ATTAAA	-15	NA	74615496	74564774	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_74568569_74570283_74570441_74573060_74573163_74574284_74574514_74575231_74575335_74576721_74576891_74579802_74580010_74581035_74581111_74581351_74581437_74590136_74590347_74614824
transcript_1409.known	chr1	+	625	4	FSM	ENSMUSG00000061518.12	ENSMUST00000081180.7	625	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	3394.14034280651	15744	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGGCTAGTCTTATGTC	NA	False	NA	23	True	AATAAA	-28	NA	36730529	36732467	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_36730771_36731291_36731366_36731511_36731632_36732277
transcript_14096.known	chr11	-	5789	11	FSM	ENSMUSG00000020745.16	ENSMUST00000102520.9	5789	11	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_10	313.620790127185	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATCTGGTGGGGTTTTTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	74614684	74564775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_74568569_74570283_74570441_74573060_74573163_74574284_74574514_74575231_74575335_74576721_74576891_74579802_74580010_74581035_74581111_74581351_74581437_74590136_74590347_74614025
transcript_141.known	SIRV1	-	1363	6	FSM	SIRV1A	SIRV103	1363	6	0	0	0	0	multi-exon	FALSE	canonical	3	1304	junction_5	2022.74937646758	8671	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10791	1000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV1_-_1485_6337_6474_6560_6814_7552_7815_10282_10367_10647
transcript_1410.known	chr1	+	344	3	FSM	ENSMUSG00000061518.12	ENSMUST00000195151.6	344	3	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_2	3647.5	567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGGCTAGTCTTATGTC	NA	False	NA	23	True	AATAAA	-28	NA	36730690	36732467	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_36730771_36731291_36731366_36732277
transcript_14126.known	chr11	+	12584	10	FSM	ENSMUSG00000010554.15	ENSMUST00000141755.8	12584	10	0	0	0	0	multi-exon	FALSE	canonical	3	325	junction_5	30.3892443611141	437	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTAAGGCTGTTTGTTT	8494	False	NA	NA	False	AATAAA	-15	NA	74661655	74719351	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_74661811_74664347_74664476_74674883_74675084_74678380_74678522_74683028_74683145_74686807_74686951_74694656_74694727_74696078_74696169_74707695_74707870_74707984
transcript_14130.nic	chr11	+	794	2	ISM	ENSMUSG00000038290.16	ENSMUST00000045281.13	5848	19	-48	234891	-48	-62649	5prime_fragment	FALSE	canonical	3	122	junction_1	0	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTGAAAAGGGGGAGGGGT	NA	False	NA	21	True	NA	NA	NA	74816600	74820383	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_74816830_74819818
transcript_14134.known	chr11	+	3389	15	FSM	ENSMUSG00000038335.14	ENSMUST00000045807.14	3389	15	0	0	0	0	multi-exon	FALSE	canonical	3	655	junction_8	75.3882467968452	1716	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTGTCTGGATTCTAGTA	NA	False	NA	26	True	AATAAA	-18	NA	74788903	74800168	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_74789042_74789202_74789307_74790007_74790228_74790334_74790470_74790978_74791404_74792314_74792475_74792834_74792993_74794645_74794840_74795654_74795818_74796031_74796143_74796716_74796850_74798160_74798278_74798649_74798791_74798871_74798947_74799053
transcript_1414.known	chr1	-	3248	11	FSM	ENSMUSG00000037351.10	ENSMUST00000043951.10	3248	11	0	0	0	0	multi-exon	FALSE	canonical	3	484	junction_1	31.3043128019128	340	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTATGAGTAAATATAGCCG	NA	False	NA	NA	False	AATAAA	-14	NA	36749089	36737194	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_36739260_36739417_36739459_36739616_36739679_36740214_36740390_36740501_36740595_36740765_36740983_36741139_36741265_36741555_36741682_36745950_36746027_36747271_36747337_36748886
transcript_14141.known	chr11	-	3699	9	FSM	ENSMUSG00000001323.18	ENSMUST00000065211.9	3699	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_8	25.2140833662459	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACACACGATGGTAAGAGA	NA	False	NA	NA	False	AATAAA	-13	NA	74816624	74797184	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_74799670_74799821_74800032_74800519_74800595_74801026_74801147_74801868_74801973_74802094_74802222_74803787_74803960_74810262_74810489_74816444
transcript_14146.known	chr11	-	3183	8	FSM	ENSMUSG00000001323.18	ENSMUST00000121738.8	3183	8	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_7	16.4527771987291	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACATCTCATTTATTTGG	NA	False	NA	NA	False	AATAAA	-10	NA	74816774	74797624	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_74799670_74799821_74800032_74800519_74800595_74801026_74801147_74801868_74801973_74802094_74802222_74803787_74803960_74816444
transcript_1415.known	chr1	+	2245	13	FSM	ENSMUSG00000026117.11	ENSMUST00000027291.7	2245	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	13.1790553530972	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTATTCTCATCTTCCCT	NA	False	NA	4	True	AATAAA	-17	NA	36800878	36821899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_36801024_36809882_36810294_36810869_36811031_36817233_36817373_36817460_36817546_36817627_36817672_36817831_36817884_36818197_36818394_36818765_36818973_36819917_36820111_36820199_36820341_36820426_36820540_36821541
transcript_14155.known	chr11	+	1369	6	FSM	ENSMUSG00000038335.14	ENSMUST00000155785.8	1369	6	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_5	65.4443274852756	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCAGGGTTTATTTAGCT	NA	False	NA	NA	False	AATAAA	-14	NA	74788923	74792681	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_74789042_74789202_74789307_74790007_74790228_74790334_74790470_74790978_74791404_74792314
transcript_14157.known	chr11	-	3239	9	FSM	ENSMUSG00000001323.18	ENSMUST00000108448.8	3239	9	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	30.0956807532244	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCATTTATTTGGGGGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	74816599	74797618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_74799670_74799821_74800032_74800519_74800595_74801026_74801147_74801868_74801973_74802094_74802222_74803787_74803959_74810262_74810489_74816444
transcript_14159.known	chr11	-	2139	13	FSM	ENSMUSG00000078789.10	ENSMUST00000044949.11	2139	13	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_12	23.7876893931854	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATTTTTGGTGGAAGTCA	NA	False	NA	53	True	NA	NA	NA	75081345	75068468	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_75069214_75069750_75069858_75069998_75070140_75070551_75070631_75071386_75071488_75071613_75071771_75072118_75072188_75074027_75074150_75074294_75074453_75074993_75075116_75076610_75076675_75076788_75076942_75081224
transcript_14165.known	chr11	-	2670	2	FSM	ENSMUSG00000038268.5	ENSMUST00000071562.3	2670	2	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_1	0	521	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTCTGTAGGCCCTGGCT	1637	False	NA	NA	False	AATAAA	-18	NA	75069661	75066767	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_75069214_75069437
transcript_14166.known	chr11	-	745	2	FSM	ENSMUSG00000038268.5	ENSMUST00000123489.2	745	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGACACACATAAGCCCAGA	1685	False	NA	-105	True	NA	NA	NA	75069613	75068626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_75069214_75069455
transcript_14167.known	chr11	-	5077	17	FSM	ENSMUSG00000000751.14	ENSMUST00000092907.12	5077	17	0	0	0	0	multi-exon	FALSE	canonical	3	1486	junction_1	165.245638652734	358	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGCTGTTCTGACTTTTT	NA	False	NA	NA	False	ATTAAA	-17	NA	75239150	75188991	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
transcript_1417.nnic	chr1	+	1997	12	NNC	ENSMUSG00000026117.11	novel	1338	6	NA	NA	288	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	12.0288908414713	70	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTATTCTCATCTTCCCT	NA	False	NA	4	True	AATAAA	-17	NA	36810360	36821899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_36810669_36810869_36811031_36817233_36817373_36817460_36817546_36817627_36817672_36817831_36817884_36818197_36818394_36818765_36818973_36819917_36820111_36820199_36820341_36820426_36820540_36821541
transcript_14170.known	chr11	+	3517	11	FSM	ENSMUSG00000018809.3	ENSMUST00000044530.3	3517	11	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_7	9.20923449587424	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTGTATTGGTTTCCTA	NA	False	NA	35	True	AATAAA	-37	NA	75239258	75296531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_75239578_75240494_75240641_75273075_75273221_75278236_75278327_75280897_75282054_75290426_75290610_75291107_75291272_75292943_75293077_75293934_75294052_75294242_75294367_75295591
transcript_14174.known	chr11	+	1172	3	FSM	ENSMUSG00000018809.3	ENSMUST00000157055.2	1172	3	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	8.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	75239320	75273844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_75239578_75240494_75240641_75273075
transcript_14176.known	chr11	+	527	2	FSM	ENSMUSG00000018809.3	ENSMUST00000135774.2	527	2	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	75290434	75291459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_75290610_75291107
transcript_14177.known	chr11	-	1832	8	FSM	ENSMUSG00000000753.16	ENSMUST00000000769.14	1832	8	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_1	3.91751691451488	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAAATCAACAGCTGCATT	5378	False	NA	NA	False	NA	NA	NA	75313527	75300594	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_75301220_75301659_75301871_75304732_75304876_75305746_75305951_75306400_75306557_75307055_75307255_75308734_75308823_75313321
transcript_14178.known	chr11	-	605	4	FSM	ENSMUSG00000000753.16	ENSMUST00000125982.2	605	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	3.39934634239519	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTGGCGTGAAGTTGCT	5527	False	NA	NA	False	NA	NA	NA	75313378	75306295	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_75306557_75307055_75307255_75308734_75308823_75313321
transcript_1418.nnic	chr1	+	1821	12	NNC	ENSMUSG00000026117.11	novel	1338	6	NA	NA	300	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	12.0288908414713	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTATTCTCATCTTCCCT	NA	False	NA	4	True	AATAAA	-17	NA	36810372	36821899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_36810505_36810869_36811031_36817233_36817373_36817460_36817546_36817627_36817672_36817831_36817884_36818197_36818394_36818765_36818973_36819917_36820111_36820199_36820341_36820426_36820540_36821541
transcript_14181.known	chr11	+	564	5	FSM	ENSMUSG00000038217.14	ENSMUST00000124718.8	564	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	11.2249721603218	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCTCTGGGATGGATGAG	4014	False	NA	NA	False	NA	NA	NA	75352540	75360489	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_75352582_75354518_75354684_75359382_75359466_75359667_75359751_75360297
transcript_14182.known	chr11	+	1112	5	FSM	ENSMUSG00000038217.14	ENSMUST00000108435.2	1112	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	13.1220234720107	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCTTGTGAATGTGATTG	NA	False	NA	32	True	AATAAA	-24	NA	75358904	75361725	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_75359204_75359382_75359466_75359667_75359751_75360297_75360445_75361225
transcript_14183.known	chr11	+	1153	5	FSM	ENSMUSG00000038217.14	ENSMUST00000043598.14	1153	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_4	12.2754836971909	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTGGACATGACAGCCG	NA	False	NA	NA	False	NA	NA	NA	75358904	75361483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_75359204_75359382_75359466_75359667_75359751_75360297_75360728_75361225
transcript_14185.nnic	chr11	+	1278	5	NNC	ENSMUSG00000038217.14	novel	1153	5	NA	NA	-44	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	13.1220234720107	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAGAAGAGAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	75358860	75361467	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_75359204_75359382_75359466_75359667_75359751_75360297_75360926_75361326
transcript_14186.nnic	chr11	+	1528	5	NNC	ENSMUSG00000038217.14	novel	1153	5	NA	NA	-44	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	13.1220234720107	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCATCAGTCTCTTGTGAA	NA	False	NA	24	True	AATAAA	-16	NA	75358860	75361717	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_75359204_75359382_75359466_75359667_75359751_75360297_75360926_75361326
transcript_14187.nic	chr11	+	1929	4	ISM	ENSMUSG00000038217.14	ENSMUST00000108435.2	1112	5	-44	8	-44	-8	intron_retention	FALSE	canonical	3	27	junction_1	3.09120616516523	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCATCAGTCTCTTGTGAA	NA	False	NA	24	True	AATAAA	-16	NA	75358860	75361717	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_75359204_75359382_75359466_75359667_75359751_75360297
transcript_14189.known	chr11	+	1752	3	FSM	ENSMUSG00000085148.2	ENSMUST00000149940.2	1752	3	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	6.5	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTAAAATTTTTACTCT	3838	False	NA	8	True	AATAAA	-19	NA	75352364	75357502	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_75352582_75354518_75354684_75356132
transcript_14190.known	chr11	+	1489	8	FSM	ENSMUSG00000038195.7	ENSMUST00000042972.7	1489	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.98976975388345	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTCAGTCTGTCTGTCT	NA	False	NA	NA	False	AATAAA	-21	NA	75400919	75403994	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_75401199_75401269_75401364_75401457_75401565_75401647_75401834_75402114_75402261_75402605_75402729_75403176_75403261_75403524
transcript_14191.known	chr11	+	2887	11	FSM	ENSMUSG00000038188.18	ENSMUST00000042808.13	2887	11	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_9	2.37697286480094	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATTAATTTATTTGGGGG	NA	False	NA	NA	False	ATTAAA	-25	NA	75404365	75417408	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_75404517_75404830_75404890_75405134_75405237_75405991_75406515_75411119_75411339_75411728_75411858_75412777_75412882_75413004_75413123_75414600_75414723_75414816_75414964_75416195
transcript_14195.known	chr11	+	3761	12	FSM	ENSMUSG00000017781.18	ENSMUST00000143219.8	3761	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	251.085083205404	296	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTACAGTATGGATTCGGGC	NA	False	NA	NA	False	AATAAA	-24	NA	75478922	75519630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_75479179_75483014_75483046_75489005_75489155_75494214_75494307_75498932_75498941_75499930_75500006_75503045_75503130_75510065_75510144_75510281_75510393_75511079_75511203_75516290_75516357_75516942
transcript_142.known	SIRV1	-	1300	4	FSM	SIRV1A	SIRV102	1300	4	0	0	0	0	multi-exon	FALSE	canonical	3	4191	junction_1	833.052752764727	4051	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTTGAATCGATGCATAC	NA	False	NA	NA	False	NA	NA	NA	10366	1006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV1_-_1485_6337_6814_7552_7815_10282
transcript_1420.known	chr1	+	1338	6	FSM	ENSMUSG00000026117.11	ENSMUST00000190128.2	1338	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	6.93974062915899	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGAGTATTCTCATCTTC	NA	False	NA	1	True	AATAAA	-14	NA	36818064	36821896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_36818394_36818765_36818973_36819917_36820111_36820199_36820341_36820426_36820540_36821541
transcript_14202.known	chr11	+	2679	12	FSM	ENSMUSG00000006127.10	ENSMUST00000006286.9	2679	12	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_6	22.5527847321246	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTGACTCCTTTGATGGG	5439	False	NA	27	True	TATAAA	-18	NA	75521813	75539697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_75522024_75523894_75524003_75524288_75524398_75527769_75527887_75528235_75528412_75528970_75529083_75530281_75530392_75536253_75536444_75537611_75537750_75538018_75538103_75538227_75538333_75538477
transcript_14205.known	chr11	+	2571	12	FSM	ENSMUSG00000006127.10	ENSMUST00000150857.8	2571	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	41.3619380270723	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTCGTGTGACTCCTTT	5506	False	NA	21	True	TATAAA	-12	NA	75521880	75539691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_75522024_75523929_75524003_75524288_75524398_75527769_75527887_75528235_75528412_75528970_75529083_75530281_75530392_75536253_75536444_75537611_75537750_75538018_75538103_75538227_75538333_75538477
transcript_14213.known	chr11	+	4718	32	FSM	ENSMUSG00000017774.20	ENSMUST00000108431.3	4718	32	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	44.4739631998939	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACAGTCTTCCTGTGAGT	NA	False	NA	13	True	AATAAA	-17	NA	75546698	75564734	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_75547028_75548317_75548474_75548578_75548695_75549177_75549377_75549464_75549546_75550996_75551177_75551258_75551358_75551724_75551839_75551922_75551995_75552320_75552441_75552559_75552643_75552847_75552954_75553060_75553142_75553397_75553490_75556343_75556439_75556518_75556566_75556662_75556744_75559006_75559113_75559235_75559354_75559833_75559948_75560023_75560101_75560606_75560676_75560772_75560858_75560956_75561117_75561368_75561453_75562018_75562113_75562205_75562262_75562412_75562549_75562630_75562702_75562783_75562882_75562977_75563078_75563435
transcript_14214.known	chr11	+	965	3	FSM	ENSMUSG00000017776.16	ENSMUST00000093115.4	965	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	223.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAATTTAAAAAAA	2150	False	NA	NA	False	NA	NA	NA	75570136	75591615	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_75570491_75583022_75583389_75591370
transcript_14215.nic	chr11	+	801	2	ISM	ENSMUSG00000017776.16	ENSMUST00000147718.2	852	3	12657	-74	12657	22	3prime_fragment	FALSE	canonical	3	15	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATACCGTTCTTTTTGAGT	5892	False	NA	NA	False	TTTAAA	-7	NA	75583024	75591637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_75583559_75591370
transcript_14216.known	chr11	+	4290	3	FSM	ENSMUSG00000017776.16	ENSMUST00000108425.8	4290	3	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_2	118.5	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACTATGTTGAATGTCGG	2123	False	NA	NA	False	AATAAA	-17	NA	75570109	75597734	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_75570491_75583022_75583389_75594191
transcript_14221.known	chr11	+	2100	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	0	0	0	0	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	5127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTAACTATGGATCATTT	2991	False	NA	26	True	ATTAAA	-22	NA	75623694	75656671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
transcript_14224.known	chr11	-	2199	9	FSM	ENSMUSG00000020847.16	ENSMUST00000121287.8	2199	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_8	5.97390157267426	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGGCGCAAGAGTCGTT	NA	False	NA	-10	True	AATAAA	-24	NA	75828564	75721824	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_75723041_75724227_75724375_75725588_75725703_75745129_75745305_75769774_75769862_75797343_75797474_75799736_75799881_75801775_75801886_75828488
transcript_14232.known	chr11	+	921	2	FSM	ENSMUSG00000053783.6	ENSMUST00000066408.6	921	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGAAGGAAGCCGATGCTT	NA	False	NA	NA	False	AATAAA	-18	NA	75890737	75894395	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_75891093_75893829
transcript_14233.known	chr11	-	3512	3	FSM	ENSMUSG00000020846.7	ENSMUST00000021207.7	3512	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	0.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGGGAATGCGTTTGTTT	7887	False	NA	NA	False	AATAAA	-17	NA	75918608	75910019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_75913067_75915773_75915884_75918253
transcript_14235.known	chr11	-	2833	22	FSM	ENSMUSG00000017288.16	ENSMUST00000056601.11	2833	22	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_11	13.2142642642469	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCCATCCCTGAAGCTGG	NA	False	NA	68	True	ATTAAA	-16	NA	76070473	75937051	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_75937409_75937890_75937996_75939265_75939404_75953810_75953881_75957566_75957716_75967260_75967340_75967865_75967949_75971972_75972121_75973267_75973511_75983046_75983142_75992812_75992915_76004766_76004909_76007884_76008028_76008487_76008632_76012343_76012423_76025234_76025355_76027024_76027141_76029133_76029221_76054623_76054691_76057024_76057075_76065452_76065534_76070238
transcript_14237.known	chr11	-	478	3	FSM	ENSMUSG00000017288.16	ENSMUST00000140886.3	478	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	39.5	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAAACCAGATGAGTGGT	NA	False	NA	NA	False	AATAAA	-26	NA	76070438	76061339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_76061537_76065452_76065534_76070238
transcript_14238.known	chr11	-	650	2	FSM	ENSMUSG00000017288.16	ENSMUST00000129256.2	650	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTTTATGTGTGTATG	NA	False	NA	-9	True	AATAAA	-16	NA	76070464	76067784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_76068209_76070238
transcript_1424.nic	chr1	+	1614	9	ISM	ENSMUSG00000050122.20	ENSMUST00000238425.2	4095	29	71117	46269	-81	0	internal_fragment	TRUE	canonical	3	35	junction_7	9.96164519544839	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCAGATTTCTCCCTCA	NA	False	NA	5	True	AATAAA	-22	NA	37139530	37180417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_37139908_37148076_37148232_37153541_37153681_37154738_37154871_37163031_37163131_37167964_37168142_37174515_37174647_37176810_37176969_37180171
transcript_14241.known	chr11	-	1434	9	FSM	ENSMUSG00000017286.16	ENSMUST00000017430.12	1434	9	0	0	0	0	multi-exon	FALSE	canonical	3	653	junction_6	49.1602926659311	1795	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACAAAAAAAAAACAAAAG	NA	False	NA	NA	False	NA	NA	NA	76134551	76112335	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_76112858_76123847_76123935_76124027_76124142_76124725_76124813_76125214_76125352_76128494_76128640_76130277_76130399_76131698_76131749_76134380
transcript_14242.known	chr11	+	2130	5	FSM	ENSMUSG00000069808.14	ENSMUST00000094014.10	2130	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	6.18465843842649	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTTATGTGCCCTGGCG	3406	False	NA	NA	False	ATTAAA	-17	NA	76092840	76100242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_76093082_76093377_76093462_76096079_76096282_76097953_76098050_76098735
transcript_14245.known	chr11	+	581	2	FSM	ENSMUSG00000038057.5	ENSMUST00000040806.5	581	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAGTGGAGTCTGTGGCA	NA	False	NA	NA	False	AATAAA	-15	NA	76108433	76109492	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_76108575_76109052
transcript_14246.known	chr11	-	3540	2	FSM	ENSMUSG00000049396.7	ENSMUST00000102500.5	3540	2	0	0	0	0	multi-exon	FALSE	canonical	3	437	junction_1	0	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGAGCCTTTCTCAGAAG	NA	False	NA	-1	True	AATAAA	-22	NA	76108490	76101396	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_76104750_76108303
transcript_14247.known	chr11	-	234	2	FSM	ENSMUSG00000049396.7	ENSMUST00000143822.2	234	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTCTTTCTCCCAGAGGC	NA	False	NA	NA	False	CATAAA	-15	NA	76108343	76107904	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_76108099_76108303
transcript_14251.known	chr11	+	1510	4	FSM	ENSMUSG00000038046.5	ENSMUST00000040577.5	1510	4	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	6.53197264742181	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATATGAGTGTTTGCAGG	550	False	NA	23	True	ATTAAA	-31	NA	76134540	76141445	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_76134913_76135104_76135350_76138172_76138341_76140720
transcript_14254.nic	chr11	+	837	3	ISM	ENSMUSG00000038046.5	ENSMUST00000040577.5	1510	4	8	3045	8	2690	5prime_fragment	FALSE	canonical	3	128	junction_1	8	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTGTACATGTGTATGT	558	False	NA	NA	False	NA	NA	NA	76134548	76138400	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_76134913_76135104_76135350_76138172
transcript_14255.known	chr11	+	957	2	FSM	ENSMUSG00000038046.5	ENSMUST00000125463.3	957	2	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTGTTGTTTGTTTGTTTG	571	False	NA	NA	False	AAAAAG	-4	NA	76134561	76135710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_76134913_76135104
transcript_14256.nnic	chr11	-	1765	8	NNC	ENSMUSG00000020844.7	novel	2755	8	NA	NA	111653	-760	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_7	32.3412922387691	93	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTTACTGTGTGCTTAGTT	1381	False	NA	-5	True	NA	NA	NA	76178241	76148783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_76149574_76152367_76152493_76153833_76154014_76163201_76163309_76164796_76164898_76165340_76165475_76169299_76169418_76178031
transcript_14257.nnic	chr11	-	1717	8	NNC	ENSMUSG00000020844.7	novel	2755	8	NA	NA	111634	-760	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_7	33.6961210145704	41	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTTACTGTGTGCTTAGTT	1362	False	NA	-5	True	NA	NA	NA	76178260	76148783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_76149574_76152367_76152493_76153833_76154014_76163201_76163309_76164796_76164898_76165340_76165475_76169299_76169418_76178098
transcript_1426.nic	chr1	+	1346	8	NIC	ENSMUSG00000050122.20	novel	4717	27	NA	NA	32	0	combination_of_known_junctions	FALSE	canonical	2	12	junction_1	16.9440857179231	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCAGATTTCTCCCTCA	NA	False	NA	5	True	AATAAA	-22	NA	37139643	37180417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_37139908_37153541_37153681_37154738_37154871_37163031_37163131_37167964_37168142_37174515_37174647_37176810_37176969_37180171
transcript_14263.known	chr11	+	746	4	FSM	ENSMUSG00000020843.16	ENSMUST00000120699.8	746	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	120.856204731996	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGGAGGTGGTATGGCAGA	NA	False	NA	-49	True	NA	NA	NA	76297777	76305155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_76297970_76300467_76300665_76301952_76302026_76304871
transcript_14266.known	chr11	+	362	3	FSM	ENSMUSG00000020843.16	ENSMUST00000152183.2	362	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	125	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCTTTCTCTGCTGCAA	NA	False	NA	NA	False	AGTAAA	-28	NA	76298016	76304908	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_76298269_76301952_76302026_76304871
transcript_14268.known	chr11	+	2817	4	FSM	ENSMUSG00000020843.16	ENSMUST00000021203.7	2817	4	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_1	9.62635271879577	1385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGCTGATTAAGTCCCAC	NA	False	NA	3	True	AATAAA	-15	NA	76297968	76307118	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_76298269_76300467_76300665_76301952_76302026_76304871
transcript_14269.known	chr11	+	503	1	FSM	ENSMUSG00000080763.3	ENSMUST00000119724.3	503	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	127	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGATCTTACTGTTAATAAA	NA	False	NA	NA	False	NA	NA	NA	76404894	76405397	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_76404900_76405400
transcript_14271.nnic	chr11	+	286	2	Genic_Genomic	ENSMUSG00000024205.8	novel	311	1	NA	NA	-37	44	multi-exon	FALSE	canonical	0	0	junction_1	0	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGACAGGACCTCACC	NA	False	NA	NA	False	AATAAA	-29	NA	76492107	76492499	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr11_+_76492283_76492388
transcript_14272.known	chr11	+	311	1	FSM	ENSMUSG00000024205.8	ENSMUST00000136893.3	311	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2917	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCCTCCCCCAATAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	76492144	76492455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_76492100_76492500
transcript_14273.known	chr11	-	4289	9	FSM	ENSMUSG00000010392.9	ENSMUST00000010536.9	4289	9	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_2	27.7778576387741	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTCTTTGGTTATCTG	NA	False	NA	NA	False	AATAAA	-16	NA	76654405	76617427	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_76621060_76625394_76625478_76628207_76628238_76639333_76639409_76641636_76641729_76645194_76645303_76645538_76645627_76652060_76652182_76654345
transcript_14276.nic	chr11	-	873	7	ISM	ENSMUSG00000010392.9	ENSMUST00000010536.9	4289	9	-63	10544	-63	-10544	5prime_fragment	FALSE	canonical	3	229	junction_5	30.259984578097	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGAATTTGCCTATGAT	NA	False	NA	NA	False	AAAAAG	-4	NA	76654468	76627971	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_76628238_76639333_76639409_76641636_76641729_76645194_76645303_76645538_76645627_76652060_76652182_76654345
transcript_14283.known	chr11	+	2497	12	FSM	ENSMUSG00000020840.11	ENSMUST00000021197.10	2497	12	0	0	0	0	multi-exon	FALSE	canonical	3	631	junction_4	56.5853410915431	2781	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGCCGGCGTGTCTGGTC	NA	False	NA	30	True	AATAAA	-19	NA	76836329	76878205	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_76836720_76837067_76837266_76840785_76840896_76841869_76842012_76843326_76843416_76845335_76845429_76856640_76856797_76857557_76857717_76857819_76857888_76859428_76859547_76862734_76862805_76877301
transcript_14297.known	chr11	-	3114	7	FSM	ENSMUSG00000037958.14	ENSMUST00000102494.8	3114	7	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_6	27.2457947825593	612	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGACATCCTGTAAATTTA	NA	False	NA	-5	True	AATAAA	-28	NA	76969261	76935117	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_76937581_76939178_76939288_76940098_76940307_76941409_76941539_76945769_76945827_76967479_76967571_76969204
transcript_143.known	SIRV1	-	670	5	FSM	SIRV1A	SIRV105	670	5	0	0	0	0	multi-exon	FALSE	canonical	3	1547	junction_4	2187.81237769604	13865	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCTGGAAGTCAAAAGACT	NA	False	NA	NA	False	NA	NA	NA	10640	6449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV1_-_6474_6560_6814_7552_7815_10282_10367_10593
transcript_14300.known	chr11	+	2255	2	FSM	ENSMUSG00000083899.3	ENSMUST00000121455.3	2255	2	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6456	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACCAGAACTATGTGTTT	NA	False	NA	NA	False	NA	NA	NA	77184269	77186724	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_77185700_77185899
transcript_14304.nnic	chr11	-	1346	6	NIC	ENSMUSG00000044328.14	novel	1463	7	NA	NA	48	0	combination_of_known_splicesites	FALSE	canonical	2	14	junction_5	68.0458668840364	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGTTGGGAGATTGTCTCT	NA	False	NA	1	True	ATTAAA	-21	NA	77404148	77398924	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_77399204_77399282_77399818_77399901_77400100_77400423_77400553_77403478_77403521_77403985
transcript_14309.known	chr11	-	1463	7	FSM	ENSMUSG00000044328.14	ENSMUST00000060417.11	1463	7	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_1	13.984117975602	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGTTGGGAGATTGTCTCT	NA	False	NA	1	True	ATTAAA	-21	NA	77404196	77398924	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_77399204_77399282_77399818_77399901_77400100_77400423_77400553_77403478_77403521_77403722_77403792_77403985
transcript_14310.known	chr11	+	2662	2	FSM	ENSMUSG00000000686.12	ENSMUST00000094004.5	2662	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTTTTGTTTGTTATTTA	NA	False	NA	NA	False	NA	NA	NA	77405946	77410871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_77406879_77409141
transcript_14314.known	chr11	+	5158	4	FSM	ENSMUSG00000037857.17	ENSMUST00000100802.11	5158	4	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_1	19.0146142626022	553	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTTTCTGATTTTTTGT	NA	False	NA	17	True	ATTAAA	-18	NA	77576980	77603567	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_77577334_77582367_77584081_77596334_77596368_77600508
transcript_14317.known	chr11	+	3040	2	FSM	ENSMUSG00000000631.21	ENSMUST00000100795.4	3040	2	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAAAGGCTGTGTGTGGT	NA	False	NA	NA	False	AAAAAG	-2	NA	77654126	77671021	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_77654206_77668060
transcript_14318.known	chr11	+	286	2	FSM	ENSMUSG00000000631.21	ENSMUST00000164315.2	286	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAACTGCGGAGCCTGGAA	NA	False	NA	47	True	NA	NA	NA	77656428	77668232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_77656543_77668060
transcript_14319.known	chr11	+	7513	42	FSM	ENSMUSG00000000631.21	ENSMUST00000108375.9	7513	42	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_10	31.5068522239413	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAAGTTTCCCTGCCTCTC	NA	False	NA	19	True	AATAAA	-20	NA	77654071	77756806	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_77654206_77668060_77669141_77708444_77708533_77708724_77708832_77708927_77709105_77709406_77709621_77709736_77709880_77710802_77710904_77711623_77711688_77711867_77712013_77713488_77713501_77714101_77714273_77714587_77714679_77714918_77715112_77715928_77716010_77718361_77718504_77718616_77718777_77720002_77720190_77720445_77720690_77723219_77723330_77727242_77727309_77731506_77731636_77732273_77732418_77732744_77732835_77732973_77733094_77733282_77733395_77733929_77734058_77734342_77734498_77736221_77736346_77736433_77736635_77737197_77737309_77737716_77737822_77738117_77738265_77738750_77738865_77740195_77740313_77741047_77741132_77741571_77741710_77744042_77744229_77744577_77744718_77745503_77745549_77748548_77748672_77755516
transcript_14330.known	chr11	+	1779	5	FSM	ENSMUSG00000020834.18	ENSMUST00000021187.12	1779	5	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	5.93190525885234	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTGGCTCCCGCCTCTT	NA	False	NA	5	True	AATAAA	-17	NA	77923105	77928692	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_77923325_77923410_77923530_77924838_77924963_77925100_77925413_77927687
transcript_14331.known	chr11	+	2699	12	FSM	ENSMUSG00000061981.15	ENSMUST00000100784.9	2699	12	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	138.547303733782	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCTTTCATCGTATATTC	NA	False	NA	18	True	AATAAA	-15	NA	77928766	77951257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_77928939_77940303_77940386_77944188_77944280_77945610_77945702_77946582_77946707_77948087_77948207_77948313_77948428_77948527_77948648_77948725_77948941_77949332_77949517_77949770_77949921_77950020
transcript_14333.known	chr11	+	2621	11	FSM	ENSMUSG00000061981.15	ENSMUST00000072289.12	2621	11	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_3	23.4778619128744	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTCATCGTATATTCTGT	NA	False	NA	21	True	AATAAA	-18	NA	77928756	77951260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_77928939_77940303_77940386_77945610_77945702_77946582_77946707_77948087_77948207_77948313_77948428_77948527_77948648_77948725_77948941_77949332_77949517_77949770_77949921_77950020
transcript_14340.known	chr11	-	2014	10	FSM	ENSMUSG00000020832.15	ENSMUST00000021183.4	2014	10	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_8	16.2890556304942	335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATCTTTTATTTCTTT	NA	False	NA	-2	True	AATAAA	-22	NA	77971209	77964201	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_77965001_77965105_77965187_77965303_77965454_77966216_77966466_77966547_77966661_77966815_77966878_77967058_77967106_77968642_77968721_77969087_77969216_77970902
transcript_14342.nnic	chr11	-	1999	10	NNC	ENSMUSG00000020832.15	novel	2014	10	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	63.831375078753	48	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATCTTTTATTTCTTT	NA	False	NA	-2	True	AATAAA	-22	NA	77971215	77964201	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_77965001_77965105_77965187_77965324_77965454_77966216_77966466_77966547_77966661_77966815_77966878_77967058_77967106_77968642_77968721_77969087_77969216_77970902
transcript_14346.known	chr11	-	2131	9	FSM	ENSMUSG00000020832.15	ENSMUST00000139731.8	2131	9	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_7	16.6466025062173	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATCTTTTATTTCTTT	NA	False	NA	-2	True	AATAAA	-22	NA	77971209	77964201	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_77965001_77965105_77965454_77966216_77966466_77966547_77966661_77966815_77966878_77967058_77967106_77968642_77968721_77969087_77969216_77970902
transcript_14349.known	chr11	+	3258	3	FSM	ENSMUSG00000037750.17	ENSMUST00000073705.12	3258	3	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_2	31	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAAAATGCCTGCGTGTGT	2598	False	NA	2	True	TTTAAA	-17	NA	77985485	78047526	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_77985618_78033918_78034041_78044522
transcript_14351.known	chr11	+	2473	3	FSM	ENSMUSG00000037750.17	ENSMUST00000100782.4	2473	3	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_2	46.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTTTAAAAATGCATTTGG	2646	False	NA	NA	False	ATTAAA	-26	NA	77985533	78046901	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_77985618_78033918_78034041_78044634
transcript_14353.known	chr11	-	2078	7	FSM	ENSMUSG00000017386.11	ENSMUST00000017530.4	2078	7	0	0	0	0	multi-exon	FALSE	canonical	3	457	junction_4	31.7525152109596	550	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAGCCTGTCTCCTCCCA	NA	False	NA	1	True	NA	NA	NA	78056415	78050225	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_78051375_78051618_78051775_78051858_78052021_78052112_78052275_78052343_78052449_78053207_78053260_78056123
transcript_14355.known	chr11	-	2809	15	FSM	ENSMUSG00000017405.15	ENSMUST00000017549.13	2809	15	0	0	0	0	multi-exon	FALSE	canonical	1	11	junction_10	13.5103890486136	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGCTTATGATCTCTT	6248	False	NA	0	True	AATAAA	-14	NA	78067501	78056931	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_78057604_78057975_78058135_78058288_78058448_78058548_78058713_78058917_78059069_78059797_78059916_78060197_78060275_78061203_78061355_78061438_78061621_78061698_78061779_78061915_78062125_78062936_78063069_78063276_78063510_78063750_78063957_78067385
transcript_14359.known	chr11	-	2882	14	FSM	ENSMUSG00000017405.15	ENSMUST00000152611.8	2882	14	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_7	9.26148734971841	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGCTTATGATCTCTT	6312	False	NA	0	True	AATAAA	-14	NA	78067437	78056931	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_78057604_78057975_78058135_78058288_78058448_78058548_78058713_78058917_78059069_78059797_78059916_78060197_78060275_78061203_78061355_78061438_78061621_78061698_78062125_78062936_78063069_78063276_78063510_78063750_78063957_78067385
transcript_14363.nic	chr11	-	1439	3	ISM	ENSMUSG00000017405.15	ENSMUST00000142812.8	2876	4	-92	1607	-31	-411	5prime_fragment	FALSE	canonical	3	45	junction_1	5.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTTTTTTTTTTTTAAT	6217	False	NA	NA	False	NA	NA	NA	78067532	78062423	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_78063510_78063750_78063957_78067385
transcript_14364.known	chr11	-	2876	4	FSM	ENSMUSG00000017405.15	ENSMUST00000142812.8	2876	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_2	5.18544972870135	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCAAAAAAAAAAAAAAAGGG	6309	False	NA	NA	False	NA	NA	NA	78067440	78060816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_78061621_78061698_78063510_78063750_78063957_78067385
transcript_14372.known	chr11	+	462	4	FSM	ENSMUSG00000019437.18	ENSMUST00000145507.8	462	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	84.0119039184329	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCAAGTTCTTCCTACAG	NA	False	NA	NA	False	NA	NA	NA	78068974	78070980	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_78069063_78070195_78070279_78070365_78070449_78070772
transcript_14374.known	chr11	-	560	5	FSM	ENSMUSG00000058546.9	ENSMUST00000102483.5	560	5	0	0	0	0	multi-exon	FALSE	canonical	3	10927	junction_1	3598.81438810061	42092	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGCTGCTTGTCATTTGT	5963	False	NA	-14	True	CATAAA	-1	NA	78074410	78071760	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_78071824_78071979_78072050_78072242_78072420_78073628_78073813_78074344
transcript_14375.known	chr11	+	1412	4	FSM	ENSMUSG00000019437.18	ENSMUST00000127587.8	1412	4	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	14.2672897060218	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGTCTTAATTGCTCAGA	NA	False	NA	52	True	NA	NA	NA	78069510	78071646	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_78069883_78070195_78070279_78070365_78070449_78070772
transcript_14376.known	chr11	+	714	3	FSM	ENSMUSG00000019437.18	ENSMUST00000108338.2	714	3	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	5	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGTTCCTCAGCTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	78069587	78070701	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_78069883_78070195_78070279_78070365
transcript_14377.known	chr11	-	588	4	FSM	ENSMUSG00000058546.9	ENSMUST00000127270.2	588	4	0	0	0	0	multi-exon	FALSE	canonical	3	10927	junction_1	3582.37128170713	3301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCTTGTCATTTGTCGC	6470	False	NA	-11	True	CATAAA	-4	NA	78073903	78071757	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_78071824_78071979_78072050_78072242_78072420_78073628
transcript_14379.known	chr11	+	1368	11	FSM	ENSMUSG00000002059.19	ENSMUST00000002128.14	1368	11	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	27.8790243731735	1546	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTCTTTCTTTAAAG	6025	False	NA	21	True	ATTAAA	-15	NA	78079255	78083014	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_78079338_78080003_78080217_78080396_78080489_78080955_78081022_78081114_78081217_78081303_78081369_78081510_78081563_78082033_78082116_78082190_78082282_78082400_78082509_78082599
transcript_14386.known	chr11	+	795	10	FSM	ENSMUSG00000002059.19	ENSMUST00000150941.8	795	10	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	46.6883547486501	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCAGTGAGGACTGTCCA	6035	False	NA	NA	False	AAAAAG	-16	NA	78079265	78082664	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_78079338_78080396_78080489_78080955_78081022_78081114_78081217_78081303_78081369_78081510_78081563_78082033_78082116_78082190_78082282_78082400_78082509_78082599
transcript_14392.known	chr11	+	1685	10	FSM	ENSMUSG00000002059.19	ENSMUST00000108322.9	1685	10	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	10.0443461155462	1350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTCTTTCTTTAAAG	6374	False	NA	21	True	ATTAAA	-15	NA	78079604	78083014	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_78080217_78080396_78080489_78080955_78081022_78081114_78081217_78081303_78081369_78081510_78081563_78082033_78082116_78082190_78082282_78082400_78082509_78082599
transcript_14394.known	chr11	+	1359	4	FSM	ENSMUSG00000044122.16	ENSMUST00000108317.3	1359	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	3.74165738677394	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGCCTGCCTCTCCATCC	NA	False	NA	NA	False	AATAAA	-17	NA	78085559	78096589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_78085781_78092637_78092719_78094890_78095024_78095665
transcript_144.nnic	SIRV12002	+	254	2	Genic_Genomic	SIRV12002A	novel	11999	1	NA	NA	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	AAGAAA	-36	NA	0	11999	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_SIRV12002_+_51_11795
transcript_14400.known	chr11	+	960	3	FSM	ENSMUSG00000044122.16	ENSMUST00000060539.13	960	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	1	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGCAAACAGAGTGAATAATA	NA	False	NA	-30	True	NA	NA	NA	78085529	78096293	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_78085781_78092637_78092719_78095665
transcript_14404.known	chr11	-	6488	37	FSM	ENSMUSG00000002052.7	ENSMUST00000002121.5	6488	37	0	0	0	0	multi-exon	TRUE	canonical	3	251	junction_18	43.9224555183955	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGTTTATTGTTTTTTTTG	NA	False	NA	-1	True	NA	NA	NA	78136813	78097571	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_78098596_78098875_78099064_78099677_78099845_78099927_78100006_78100249_78100363_78102622_78102748_78102908_78103023_78103494_78103734_78104092_78104289_78107030_78107172_78108666_78108810_78109993_78110142_78110708_78110917_78111946_78112075_78112935_78113104_78113173_78113312_78113595_78113732_78113979_78114057_78115191_78115310_78115421_78115562_78116132_78116329_78116489_78116645_78116772_78116924_78117005_78117136_78117500_78117600_78117716_78117866_78119454_78119598_78119779_78119870_78120222_78120340_78120991_78121094_78121753_78122028_78122598_78122684_78122843_78123037_78123330_78123408_78123500_78123660_78124370_78124510_78136373
transcript_1441.known	chr1	+	462	3	FSM	ENSMUSG00000050122.20	ENSMUST00000195450.2	462	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	16	604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCAGATTTCTCCCTCA	NA	False	NA	5	True	AATAAA	-22	NA	37174588	37180417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_37174647_37176810_37176969_37180171
transcript_14413.nnic	chr11	+	1218	4	NNC	ENSMUSG00000002064.11	novel	1268	3	NA	NA	-40	-12	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_3	99.5199589138893	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTTTATTCATTGTGTGG	NA	False	NA	7	True	NA	NA	NA	78136531	78146310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_78136997_78141841_78142039_78145676_78145738_78145815
transcript_14425.known	chr11	+	1268	3	FSM	ENSMUSG00000002064.11	ENSMUST00000002133.9	1268	3	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_1	4	2354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGGTCATTTATTAAG	NA	False	NA	19	True	NA	NA	NA	78136571	78146322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_78136997_78141841_78142039_78145676
transcript_1443.known	chr1	-	3863	3	FSM	ENSMUSG00000026112.8	ENSMUST00000027286.7	3863	3	0	0	0	0	multi-exon	FALSE	canonical	3	395	junction_2	27.5	792	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTCTGTTTCAAGATTA	6272	False	NA	-3	True	NA	NA	NA	37469184	37456164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_37459709_37467422_37467507_37468949
transcript_14434.known	chr11	+	964	3	FSM	ENSMUSG00000002064.11	ENSMUST00000154080.2	964	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	3	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGGTCATTTATTAAG	NA	False	NA	19	True	NA	NA	NA	78141246	78146322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_78141372_78141841_78142039_78145680
transcript_14435.known	chr11	+	7443	39	FSM	ENSMUSG00000010277.8	ENSMUST00000010421.7	7443	39	0	0	0	0	multi-exon	FALSE	canonical	3	514	junction_1	88.3718730713483	194	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTCCTTCCCTCCTCA	NA	False	NA	21	True	AGTAAA	-14	NA	78152577	78181449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_78152744_78153524_78153655_78154415_78154466_78154737_78154886_78155289_78155409_78156004_78156066_78156398_78156589_78157176_78157301_78157420_78157546_78157761_78157830_78157922_78158069_78158924_78159044_78159151_78159316_78159464_78159724_78160313_78160520_78162116_78163210_78163603_78163796_78163922_78164126_78164266_78164386_78164507_78164729_78165290_78165482_78165613_78165714_78165832_78166036_78167865_78168161_78169872_78170031_78170534_78170742_78173884_78173985_78174925_78175109_78175564_78175687_78176263_78176420_78176500_78176623_78177338_78177520_78178121_78178209_78178509_78178621_78178757_78178894_78178990_78179122_78179766_78179869_78180111_78180247_78180629
transcript_14439.known	chr11	+	3887	24	FSM	ENSMUSG00000002055.10	ENSMUST00000045026.4	3887	24	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_10	25.9765053072448	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCAGTCCACTGAATCTT	2752	False	NA	8	True	AATAAA	-18	NA	78192354	78213283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_78192537_78192720_78192847_78194871_78195867_78195968_78196147_78203940_78204016_78204173_78204267_78204338_78204474_78204645_78204766_78204989_78205083_78205168_78205283_78205530_78205625_78205786_78205935_78206013_78206117_78206334_78206469_78206725_78206868_78210292_78210405_78210811_78210899_78211157_78211279_78211386_78211499_78211868_78211950_78212087_78212244_78212323_78212399_78212511_78212593_78212953
transcript_14447.known	chr11	+	2786	9	FSM	ENSMUSG00000017390.16	ENSMUST00000017534.15	2786	9	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_5	18.6547581061776	496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTACCGTTTTGTCAGTTTT	NA	False	NA	NA	False	NA	NA	NA	78213793	78218607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_78214049_78215215_78215340_78215429_78215642_78215734_78215790_78215874_78216036_78216154_78216239_78216467_78216643_78216760_78216961_78217087
transcript_14458.known	chr11	+	1700	8	FSM	ENSMUSG00000017390.16	ENSMUST00000102478.4	1700	8	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_4	13.6426701557867	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACCGCTCTGTCTGTCTGT	NA	False	NA	18	True	AATAAA	-18	NA	78215025	78217586	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_78215340_78215429_78215642_78215734_78215790_78215874_78216036_78216154_78216239_78216467_78216643_78216760_78216961_78217087
transcript_14461.known	chr11	+	2501	12	FSM	ENSMUSG00000041958.11	ENSMUST00000048073.9	2501	12	0	0	0	0	multi-exon	FALSE	canonical	3	513	junction_10	36.2694234084327	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCATAACTCGTTCTTGT	NA	False	NA	28	True	NA	NA	NA	78219240	78233608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_78219335_78219557_78219698_78219800_78219913_78223775_78223866_78224492_78224585_78226252_78226461_78227513_78227657_78228614_78228730_78230168_78230315_78230834_78230936_78232050_78232262_78232559
transcript_14462.nnic	chr11	+	2356	11	NIC	ENSMUSG00000041958.11	novel	2501	12	NA	NA	5	0	combination_of_known_splicesites	FALSE	canonical	3	77	junction_1	151.766300607216	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCATAACTCGTTCTTGT	NA	False	NA	28	True	NA	NA	NA	78219245	78233608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_78219335_78219800_78219913_78223775_78223866_78224492_78224585_78226252_78226461_78227513_78227657_78228614_78228730_78230168_78230315_78230834_78230936_78232050_78232262_78232559
transcript_14465.nic	chr11	+	1617	10	ISM	ENSMUSG00000041958.11	ENSMUST00000048073.9	2501	12	16	2281	16	-2281	5prime_fragment	FALSE	canonical	3	527	junction_7	30.7394466483526	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGTCTTGTTTTTTTCAT	NA	False	NA	NA	False	NA	NA	NA	78219256	78231327	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_78219335_78219557_78219698_78219800_78219913_78223775_78223866_78224492_78224585_78226252_78226461_78227513_78227657_78228614_78228730_78230168_78230315_78230834
transcript_14469.nnic	chr11	+	1117	5	NNC	ENSMUSG00000002058.14	novel	1329	5	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	102.793482283655	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGTGTCTATAGGGAA	NA	False	NA	19	True	AATAAA	-26	NA	78234305	78239990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_78234399_78238043_78238158_78238622_78238726_78238912_78239086_78239356
transcript_14471.known	chr11	+	1371	5	FSM	ENSMUSG00000002058.14	ENSMUST00000108295.8	1371	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	104.920207777148	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGTGTCTATAGGGAA	NA	False	NA	19	True	AATAAA	-26	NA	78234331	78239990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_78234613_78238043_78238158_78238622_78238726_78238912_78239086_78239290
transcript_14472.known	chr11	+	1329	5	FSM	ENSMUSG00000002058.14	ENSMUST00000002127.14	1329	5	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_3	19.8557296516648	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGTGTCTATAGGGAA	NA	False	NA	19	True	AATAAA	-26	NA	78234307	78239990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_78234613_78238043_78238158_78238622_78238726_78238912_78239086_78239356
transcript_14474.known	chr11	+	1185	4	FSM	ENSMUSG00000002058.14	ENSMUST00000149161.2	1185	4	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_2	14.613540144522	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGAGTAGTGCCCCCTT	NA	False	NA	NA	False	NA	NA	NA	78234370	78239722	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_78234613_78238043_78238158_78238622_78239086_78239356
transcript_14476.nnic	chr11	+	753	4	Antisense	novelGene_ENSMUSG00000002057.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	0.471404520791032	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAGCTGCCCATGCAAAAA	3447	False	NA	NA	False	AATAAA	-20	NA	78251518	78267327	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr11_+_78251646_78263583_78263808_78265094_78265173_78267003
transcript_1448.known	chr1	+	1094	6	FSM	ENSMUSG00000026111.16	ENSMUST00000114925.10	1094	6	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_1	76.7739539166767	1828	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTGTGACTGTTTATTT	NA	False	NA	NA	False	AATAAA	-13	NA	37469219	37478065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_37469364_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
transcript_14480.known	chr11	-	2412	12	FSM	ENSMUSG00000001095.6	ENSMUST00000001122.6	2412	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	4.88884714899955	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTCACCGACCCTTCCTC	NA	False	NA	NA	False	CATAAA	-19	NA	78313043	78287912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_78288682_78289116_78289255_78289857_78290020_78290909_78291032_78291301_78291391_78291569_78291789_78293897_78294021_78294139_78294312_78295203_78295404_78295496_78295634_78297635_78297765_78312891
transcript_14482.known	chr11	+	1978	5	FSM	ENSMUSG00000020829.10	ENSMUST00000001126.4	1978	5	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	12.7549010188241	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGCTTTGGGGCTTTCTG	8337	False	NA	26	True	AGTAAA	-27	NA	78356522	78362771	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_78356832_78357176_78358030_78359450_78359535_78361520_78361678_78362196
transcript_14483.known	chr11	+	749	4	FSM	ENSMUSG00000020829.10	ENSMUST00000146431.3	749	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	30.8796948747159	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAGATACAGAATCTAATCA	8390	False	NA	NA	False	NA	NA	NA	78356575	78362448	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_78356832_78359450_78359535_78361520_78361678_78362196
transcript_14484.known	chr11	-	2497	4	FSM	ENSMUSG00000050132.14	ENSMUST00000153534.2	2497	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	7.78888096369861	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGGCACAAGTCACTACTA	4413	False	NA	76	True	AAGAAA	-19	NA	78374624	78364038	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_78365859_78366032_78366155_78373982_78374173_78374259
transcript_14488.known	chr11	-	1347	6	FSM	ENSMUSG00000051232.14	ENSMUST00000052566.8	1347	6	0	0	0	0	multi-exon	FALSE	canonical	3	479	junction_5	35.6561355169065	2338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATCTTTGGTCTTAAA	1631	False	NA	-29	True	AATAAA	-21	NA	78402998	78397880	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_78398632_78399144_78399258_78399478_78399522_78400550_78400641_78401173_78401248_78402722
transcript_14489.known	chr11	-	562	3	FSM	ENSMUSG00000051232.14	ENSMUST00000148393.2	562	3	0	0	0	0	multi-exon	FALSE	canonical	3	479	junction_2	29	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTAAGGCCTATGTTCC	1720	False	NA	NA	False	NA	NA	NA	78402909	78400339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_78400641_78401173_78401248_78402722
transcript_14491.known	chr11	+	2054	11	FSM	ENSMUSG00000001100.11	ENSMUST00000001127.11	2054	11	0	0	0	0	multi-exon	FALSE	canonical	3	1074	junction_9	50.3904752904753	3405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGAGTATTGTTCTTAA	1635	False	NA	18	True	ATTAAA	-15	NA	78403018	78413562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_78403299_78404745_78404828_78405913_78406012_78407644_78407742_78408378_78408455_78408650_78408759_78408898_78409036_78409778_78409806_78410005_78410132_78411977_78412058_78412619
transcript_14493.known	chr11	+	1329	11	FSM	ENSMUSG00000001100.11	ENSMUST00000133601.2	1329	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	351.171240280294	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCACGGCCATTTTTGTCT	1858	False	NA	15	True	AATAAA	-17	NA	78403241	78412997	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_78403299_78404745_78404828_78405913_78406012_78407644_78407742_78408378_78408455_78408650_78408759_78408898_78409036_78409778_78409806_78410005_78410195_78411977_78412058_78412619
transcript_1450.known	chr1	+	1414	6	FSM	ENSMUSG00000026111.16	ENSMUST00000027285.13	1414	6	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_1	129.498416978741	799	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTTCAGCAAGCGGTAT	NA	False	NA	NA	False	AATGAA	-44	NA	37469250	37478205	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_37469575_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
transcript_14509.known	chr11	-	3768	7	FSM	ENSMUSG00000017615.13	ENSMUST00000108277.3	3768	7	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_6	14.2789666604026	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTCTGTTCCCTCCATG	NA	False	NA	14	True	NA	NA	NA	78427158	78413675	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_78416368_78418351_78418548_78419076_78419130_78419215_78419306_78419895_78420066_78420853_78421174_78426911
transcript_1451.nic	chr1	+	1156	6	NIC	ENSMUSG00000026111.16	novel	1179	6	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	188.928134485047	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGACTGTTTATTTTCA	NA	False	NA	NA	False	AATAAA	-16	NA	37469215	37478068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_37469419_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
transcript_1452.known	chr1	+	1179	6	FSM	ENSMUSG00000026111.16	ENSMUST00000118059.3	1179	6	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	196.480635178126	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGACTGTTTATTTTCA	NA	False	NA	NA	False	AATAAA	-16	NA	37469282	37478068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_37469509_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
transcript_14521.known	chr11	+	735	6	FSM	ENSMUSG00000001105.16	ENSMUST00000050366.15	735	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	183.589760063027	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCTTTGTGTAAAGTAGA	NA	False	NA	-73	True	NA	NA	NA	78427253	78432202	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_78427403_78429335_78429565_78429637_78429789_78430785_78430872_78431720_78431825_78432186
transcript_14526.known	chr11	+	1141	6	FSM	ENSMUSG00000001105.16	ENSMUST00000128788.8	1141	6	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_1	100.921751867474	1404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGCTGTGTGCATTATTT	NA	False	NA	24	True	AATAAA	-33	NA	78427186	78432563	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_78427403_78429335_78429565_78429659_78429789_78430785_78430872_78431720_78431825_78432186
transcript_14533.known	chr11	+	582	5	FSM	ENSMUSG00000001105.16	ENSMUST00000108275.2	582	5	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	91.1125677390337	805	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGCACCCCA	NA	False	NA	40	True	NA	NA	NA	78427268	78432315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_78427403_78429659_78429789_78430785_78430872_78431720_78431825_78432186
transcript_14535.known	chr11	+	1167	5	FSM	ENSMUSG00000001105.16	ENSMUST00000137120.8	1167	5	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_1	109.732344821388	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGCAC	NA	False	NA	36	True	AATGAA	-43	NA	78427270	78432311	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_78427403_78429335_78429565_78429659_78429789_78430785_78430872_78431720
transcript_14540.known	chr11	+	909	4	FSM	ENSMUSG00000001105.16	ENSMUST00000152016.2	909	4	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	104.521130240094	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGCA	NA	False	NA	35	True	AATGAA	-42	NA	78427298	78432310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_78427403_78429659_78429789_78430785_78430872_78431720
transcript_14550.known	chr11	-	1375	3	FSM	ENSMUSG00000037278.10	ENSMUST00000103242.5	1375	3	0	0	0	0	multi-exon	TRUE	canonical	3	1037	junction_2	9	4898	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTTTGTTGTGTGGAT	NA	False	NA	-7	True	AATAAA	-23	NA	78441603	78432642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_78433623_78434311_78434457_78441353
transcript_14551.known	chr11	-	4444	11	FSM	ENSMUSG00000017376.16	ENSMUST00000142739.8	4444	11	0	0	0	0	multi-exon	TRUE	canonical	3	79	junction_6	8.57962703152066	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGTCGCTGTCTTATTTCC	NA	False	NA	-1	True	ATTAAA	-19	NA	78588199	78457993	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_78459802_78462296_78462391_78463058_78463258_78465666_78465754_78474148_78474251_78477694_78477905_78480130_78480217_78481708_78481816_78509100_78509157_78517402_78517533_78586634
transcript_14552.known	chr11	-	395	1	FSM	ENSMUSG00000082110.2	ENSMUST00000119052.2	395	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	871	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATCACATGAAAGACTGAAA	NA	False	NA	NA	False	NA	NA	NA	78476381	78475986	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_78476000_78476400
transcript_14553.known	chr11	-	1224	1	FSM	ENSMUSG00000049489.6	ENSMUST00000059468.6	1224	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2481	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGAGTCTGCCTTATGGTA	6595	False	NA	-2	True	AATAAA	-37	NA	78642555	78641331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_78641300_78642600
transcript_14557.known	chr11	+	8035	4	FSM	ENSMUSG00000072640.12	ENSMUST00000147875.9	8035	4	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_1	44.0782133132559	1859	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTACAGCTGGGTTGTCTC	NA	False	NA	NA	False	NA	NA	NA	78717409	78737696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_78717463_78726843_78726985_78728915_78729009_78729948
transcript_1456.known	chr1	+	808	5	FSM	ENSMUSG00000026111.16	ENSMUST00000144617.8	808	5	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	199.60774033088	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTTTTGGTGGTTTGAG	NA	False	NA	NA	False	NA	NA	NA	37469257	37476559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_37469419_37470373_37470658_37471631_37471753_37476242_37476383_37476457
transcript_14562.known	chr11	+	365	3	FSM	ENSMUSG00000072640.12	ENSMUST00000100748.5	365	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTGAGGTGGTTCTCGT	NA	False	NA	20	True	AAGAAA	-13	NA	78717454	78730101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_78717463_78728915_78729120_78729948
transcript_14564.nnic	chr11	-	1437	10	NNC	ENSMUSG00000001123.16	novel	1586	11	NA	NA	7072	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	7.18709405724277	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACATGTGAGATGGCTGGC	NA	False	NA	-2	True	AATAAA	-24	NA	78868585	78853804	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_78854368_78856517_78856681_78856823_78856913_78857702_78857745_78858269_78858321_78858823_78858860_78862142_78862254_78863813_78864016_78867438_78867528_78868494
transcript_14567.known	chr11	-	1520	10	FSM	ENSMUSG00000001123.16	ENSMUST00000108268.10	1520	10	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_9	3.82970843102535	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGATGGCTGGCTTATT	NA	False	NA	3	True	AATAAA	-29	NA	78875772	78853799	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_78854368_78856517_78856681_78856823_78856913_78857702_78857745_78858269_78858321_78858823_78858860_78862142_78862254_78863813_78864016_78867438_78867528_78875603
transcript_14568.known	chr11	-	1586	11	FSM	ENSMUSG00000001123.16	ENSMUST00000108269.10	1586	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	7.48398289682706	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACATGTGAGATGGCTGGC	NA	False	NA	-2	True	AATAAA	-24	NA	78875750	78853804	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_78854368_78856517_78856681_78856823_78856913_78857702_78857745_78858269_78858321_78858823_78858860_78860539_78860633_78862142_78862254_78863813_78864016_78867438_78867528_78875603
transcript_14572.known	chr11	-	2476	9	FSM	ENSMUSG00000017677.12	ENSMUST00000017821.12	2476	9	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_4	86.5338625914734	633	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTCATGGGTTGCATT	975	False	NA	-8	True	ATTAAA	-28	NA	79145497	79130197	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
transcript_14575.known	chr11	-	696	2	FSM	ENSMUSG00000086474.3	ENSMUST00000150312.2	696	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTGATTTTGGTCTTGGT	1414	False	NA	NA	False	NA	NA	NA	79673713	79672804	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_79673383_79673595
transcript_14577.known	chr11	-	3877	19	FSM	ENSMUSG00000035575.12	ENSMUST00000043152.6	3877	19	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_5	33.8632416611651	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTGAGAATGTTAATCTT	NA	False	NA	-14	True	NA	NA	NA	79853216	79824778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_79826936_79828498_79828572_79831719_79831787_79832703_79832814_79832952_79833034_79834056_79834237_79836604_79836683_79837031_79837112_79839716_79839902_79841595_79841678_79842424_79842507_79844402_79844481_79846436_79846556_79847562_79847627_79848166_79848215_79849611_79849705_79849934_79849977_79851572_79851658_79853043
transcript_14586.nic	chr11	-	780	7	ISM	ENSMUSG00000035575.12	ENSMUST00000043152.6	3877	19	-30	21532	-30	3112	5prime_fragment	FALSE	canonical	3	451	junction_4	23.4431937528429	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCTGCGTACTTTATTT	NA	False	NA	NA	False	AATACA	-16	NA	79853246	79846310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_79846556_79847562_79847627_79848166_79848215_79849611_79849705_79849934_79849977_79851572_79851658_79853043
transcript_1459.known	chr1	+	818	4	FSM	ENSMUSG00000026111.16	ENSMUST00000193979.6	818	4	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_1	217.192694781999	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCATTTTATCCAGCTCTT	NA	False	NA	NA	False	NA	NA	NA	37469266	37476351	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_37469575_37470377_37470658_37471631_37471753_37476242
transcript_14590.known	chr11	-	559	4	FSM	ENSMUSG00000035575.12	ENSMUST00000146127.2	559	4	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_1	32.1074584619974	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTTTTCTTACTCTGTGA	NA	False	NA	NA	False	NA	NA	NA	79853193	79849422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_79849705_79849934_79849977_79851572_79851658_79853043
transcript_14593.known	chr11	-	2308	20	FSM	ENSMUSG00000035575.12	ENSMUST00000108241.8	2308	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	111.483896952781	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTGGTGAACCAGTGAGT	NA	False	NA	NA	False	NA	NA	NA	79853205	79823146	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_79823541_79826730_79826936_79828498_79828572_79831719_79831787_79832703_79832814_79832952_79833034_79834056_79834237_79836604_79836683_79837031_79837112_79839716_79839902_79841595_79841678_79842424_79842507_79844402_79844481_79846436_79846556_79847562_79847627_79848166_79848215_79849611_79849705_79849934_79849977_79851572_79851658_79853043
transcript_14594.known	chr11	+	4373	16	FSM	ENSMUSG00000017548.16	ENSMUST00000017692.15	4373	16	0	0	0	0	multi-exon	FALSE	canonical	3	1594	junction_3	192.466747488726	242	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGGTCTGCATTGTTAT	NA	False	NA	37	True	TATAAA	-22	NA	79883931	79924949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_79884426_79886442_79886490_79886570_79886636_79889882_79889952_79898338_79898389_79901383_79901470_79904189_79904422_79905968_79906063_79910504_79910611_79912917_79913096_79915735_79915828_79915993_79916138_79916622_79916781_79919973_79920173_79920832_79920913_79922670
transcript_14598.known	chr11	-	2396	8	FSM	ENSMUSG00000017561.17	ENSMUST00000061283.15	2396	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	192.168081190846	615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTATTTTGTGGTTTTTTGT	4488	False	NA	-3	True	AATAAA	-20	NA	79971817	79937318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_79938564_79939417_79939531_79947277_79947411_79948617_79948841_79950025_79950204_79950923_79951012_79955017_79955226_79971609
transcript_1460.known	chr1	+	730	4	FSM	ENSMUSG00000026111.16	ENSMUST00000134184.2	730	4	0	0	0	0	multi-exon	FALSE	canonical	3	468	junction_2	19.4307888557196	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGGAACAGGTGGTGTG	NA	False	NA	NA	False	NA	NA	NA	37470424	37476693	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_37470658_37471631_37471753_37476242_37476383_37476457
transcript_14603.known	chr11	-	2230	7	FSM	ENSMUSG00000017561.17	ENSMUST00000103233.10	2230	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	206.037820152838	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTATTTTGTGGTTTTTTGT	4541	False	NA	-3	True	AATAAA	-20	NA	79971764	79937318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_79938564_79947277_79947411_79948617_79948841_79950025_79950204_79950923_79951012_79955017_79955226_79971609
transcript_14605.known	chr11	-	1871	2	FSM	ENSMUSG00000017561.17	ENSMUST00000178280.2	1871	2	0	0	0	0	multi-exon	FALSE	canonical	3	548	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4541	False	NA	NA	False	NA	NA	NA	79971764	79953509	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_79955226_79971609
transcript_1461.nic	chr1	-	416	3	ISM	ENSMUSG00000060771.16	ENSMUST00000193669.2	1981	8	-63	15003	-57	-9212	5prime_fragment	FALSE	canonical	3	21	junction_2	3	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGGTGGACACTGCCG	NA	False	NA	NA	False	ATTAAA	-39	NA	37904217	37888354	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_37888528_37894325_37894455_37904103
transcript_14619.known	chr11	-	1309	4	FSM	ENSMUSG00000046909.10	ENSMUST00000050207.10	1309	4	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_2	2.16024689946929	2195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGCCTTCTTTGCTTAA	NA	False	NA	-4	True	AATAAA	-14	NA	80033001	80027503	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_80028106_80028743_80028894_80030691_80031150_80032902
transcript_14620.nic	chr11	-	2427	4	NIC	ENSMUSG00000046909.10	novel	1309	4	NA	NA	-871	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_3	108.206592528675	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGCCTTCTTTGCTTAA	NA	False	NA	-4	True	AATAAA	-14	NA	80033872	80027503	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_80028106_80028743_80028894_80030691_80031397_80032902
transcript_14625.known	chr11	-	894	3	FSM	ENSMUSG00000046909.10	ENSMUST00000131601.2	894	3	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	113.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACCCAACGTCCTTTTATC	NA	False	NA	NA	False	NA	NA	NA	80032969	80028771	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_80028894_80030691_80031397_80032902
transcript_14629.nic	chr11	+	1219	10	ISM	ENSMUSG00000020709.16	ENSMUST00000021050.14	1785	11	-42	1729	-42	-1729	5prime_fragment	FALSE	canonical	3	12	junction_2	3.01027048536535	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGGGGCGTCTTGTCCAGT	NA	False	NA	NA	False	NA	NA	NA	80044888	80068055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_80045136_80045815_80045947_80047770_80047863_80050988_80051069_80052973_80053087_80056498_80056646_80061503_80061588_80064913_80064977_80066881_80066960_80067871
transcript_14634.nnic	chr11	-	1205	3	NNC	ENSMUSG00000086507.2	novel	984	3	NA	NA	270	-6305	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	2	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAACCCCACAAATTTAAAT	NA	False	NA	NA	False	NA	NA	NA	80068185	80055991	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_80056876_80067781_80067899_80067981
transcript_14637.known	chr11	+	1984	5	FSM	ENSMUSG00000020707.7	ENSMUST00000017839.3	1984	5	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	3.96074487943871	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGAGTTCATTGGGT	NA	False	NA	34	True	NA	NA	NA	80074676	80090583	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_80075082_80080049_80080194_80084711_80084875_80087698_80087774_80089386
transcript_14639.nnic	chr11	+	1852	4	NIC	ENSMUSG00000020707.7	novel	1984	5	NA	NA	-31	0	combination_of_known_splicesites	FALSE	canonical	3	5	junction_2	26.4491125665032	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGAGTTCATTGGGT	NA	False	NA	34	True	NA	NA	NA	80074645	80090583	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_80075082_80080049_80080194_80087698_80087774_80089386
transcript_14640.known	chr11	+	333	3	FSM	ENSMUSG00000020707.7	ENSMUST00000134909.2	333	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	28	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATAAATAAATCTTTA	NA	False	NA	NA	False	NA	NA	NA	80075048	80080837	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_80075082_80080049_80080194_80080681
transcript_14641.nnic	chr11	+	1681	3	NIC	ENSMUSG00000020707.7	novel	1984	5	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	3	4	junction_1	29.5	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGAGTTCATTGGGT	NA	False	NA	34	True	NA	NA	NA	80074672	80090583	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_80075082_80087698_80087774_80089386
transcript_14642.known	chr11	+	3297	21	FSM	ENSMUSG00000017686.18	ENSMUST00000077451.14	3297	21	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_19	176.261425161605	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGAGGTTTTTTGTCTTC	NA	False	NA	9	True	AATAAA	-20	NA	80099844	80157638	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_80100150_80111083_80111143_80114728_80114811_80116411_80116456_80116888_80116943_80118105_80118159_80124207_80124317_80124754_80124857_80132846_80132946_80133398_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80146687_80146784_80148339_80148463_80156567
transcript_14643.known	chr11	+	3029	20	FSM	ENSMUSG00000017686.18	ENSMUST00000017831.16	3029	20	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_18	134.011803341732	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACCTTTTCAAGTATTTA	NA	False	NA	34	True	AATAAA	-45	NA	80099944	80157593	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_80100150_80111083_80111143_80114728_80114811_80116411_80116456_80116888_80116943_80118105_80118159_80124207_80124317_80124754_80124857_80132846_80132946_80133398_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80146687_80146784_80156567
transcript_14644.known	chr11	+	4260	20	FSM	ENSMUSG00000017686.18	ENSMUST00000055056.16	4260	20	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_18	152.933077899418	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGCCACTGTGCCTGGCT	NA	False	NA	NA	False	NA	NA	NA	80099880	80158733	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_80100150_80111083_80111143_80114728_80114811_80116411_80116456_80116888_80116943_80118105_80118159_80124207_80124317_80124754_80124857_80132846_80132946_80133398_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80148339_80148463_80156567
transcript_14647.known	chr11	+	3687	19	FSM	ENSMUSG00000017686.18	ENSMUST00000092857.13	3687	19	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_18	65.0695971182841	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACACTTTTCAAAGACAAC	NA	False	NA	NA	False	AATAAA	-13	NA	80099909	80158312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_80100150_80111083_80111143_80114728_80114811_80116411_80116456_80116888_80116943_80118105_80118159_80124207_80124317_80124754_80124857_80132846_80132946_80133398_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80156567
transcript_14652.known	chr11	-	4554	10	FSM	ENSMUSG00000057181.16	ENSMUST00000103225.11	4554	10	0	0	0	0	multi-exon	FALSE	canonical	2	53	junction_6	17.0105268787113	168	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAAGGCTTAAATAGTGT	NA	False	NA	NA	False	TTTAAA	-3	NA	80268860	80251318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_80254845_80255661_80255766_80258887_80259025_80259353_80259419_80261156_80261277_80264465_80264524_80264899_80265044_80266332_80266459_80267628_80267710_80268667
transcript_1466.known	chr1	-	1231	7	FSM	ENSMUSG00000026088.16	ENSMUST00000027257.10	1231	7	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_5	18.2543754267908	1324	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGGATCCACTCACCTG	NA	False	NA	0	True	AATAAA	-19	NA	37929492	37917968	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_37918445_37918640_37918702_37920013_37920130_37920779_37920867_37921642_37921780_37924295_37924398_37929240
transcript_14662.known	chr11	+	1562	12	FSM	ENSMUSG00000017421.19	ENSMUST00000053740.15	1562	12	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_9	283.951136525079	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAATAGGTTTGGAGATTAA	NA	False	NA	NA	False	NA	NA	NA	80274222	80286392	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80283909_80284003_80285111_80285358_80285927_80286088_80286215
transcript_14674.known	chr11	+	2245	11	FSM	ENSMUSG00000017421.19	ENSMUST00000017567.14	2245	11	0	0	0	0	multi-exon	FALSE	canonical	3	695	junction_8	108.208317610062	888	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTGATACATGATTGAAT	NA	False	NA	130	True	AATAAA	-18	NA	80274128	80287074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80285111_80285358_80285927_80286088_80286215
transcript_14678.known	chr11	+	2311	11	FSM	ENSMUSG00000017421.19	ENSMUST00000165565.8	2311	11	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_5	381.677992553933	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTTTTGATACATGATTG	NA	False	NA	127	True	AATAAA	-15	NA	80274104	80287071	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80282156_80282228_80282660_80282819_80283909_80284003_80285111_80285358_80285927_80286088_80286215
transcript_14688.known	chr11	+	2152	9	FSM	ENSMUSG00000017421.19	ENSMUST00000108216.8	2152	9	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_8	245.265035217008	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCTCAGGCAGCTGTCCAA	NA	False	NA	NA	False	AATAAA	-16	NA	80274156	80285109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80283909
transcript_14695.known	chr11	+	2848	14	FSM	ENSMUSG00000017428.17	ENSMUST00000017572.14	2848	14	0	0	0	0	multi-exon	FALSE	canonical	3	918	junction_5	68.6804624122448	2550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTCCTTTCTTGAGTGCT	NA	False	NA	16	True	AATAAA	-20	NA	80319450	80364074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_80319582_80322530_80322633_80329076_80329202_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277_80362421_80362535
transcript_14696.known	chr11	+	1626	13	FSM	ENSMUSG00000017428.17	ENSMUST00000173938.8	1626	13	0	0	0	0	multi-exon	FALSE	canonical	3	918	junction_5	64.9491253897148	837	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAGAAAAAGAAAA	NA	False	NA	-44	True	NA	NA	NA	80319448	80362735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_80319582_80322530_80322633_80329076_80329202_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277
transcript_14697.known	chr11	+	1633	7	FSM	ENSMUSG00000035413.9	ENSMUST00000040865.9	1633	7	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	3.67045259092421	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTAGTTACCGAGTCAA	NA	False	NA	5	True	AGTAAA	-23	NA	80701000	80712859	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_80701286_80703331_80703516_80705044_80705177_80706491_80706526_80708328_80708445_80710755_80710816_80712037
transcript_14699.known	chr11	+	511	3	FSM	ENSMUSG00000009185.3	ENSMUST00000009329.3	511	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGGCATTTTTATTCAAA	NA	False	NA	NA	False	AATAAA	-26	NA	82006010	82007625	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_82006139_82006864_82006977_82007354
transcript_14706.nic	chr11	-	718	5	ISM	ENSMUSG00000020698.12	ENSMUST00000021040.10	1787	14	14	34345	14	-34345	5prime_fragment	FALSE	canonical	2	8	junction_4	0.82915619758885	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTGTGCACGTGACTCTG	NA	False	NA	NA	False	ATTAAA	-13	NA	82655118	82644420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_82644564_82645787_82645962_82651175_82651311_82653013_82653078_82654916
transcript_14707.nnic	chr11	-	583	4	NIC	ENSMUSG00000020698.12	novel	1787	14	NA	NA	14	-34345	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	3.85861230093008	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTGTGCACGTGACTCTG	NA	False	NA	NA	False	ATTAAA	-13	NA	82655118	82644420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_82644564_82645787_82645962_82653013_82653078_82654916
transcript_14708.known	chr11	-	1871	14	FSM	ENSMUSG00000020698.12	ENSMUST00000100722.5	1871	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	3.52001882727617	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTGTTTGAAAAACACTTA	NA	False	NA	NA	False	AATAAA	-24	NA	82655147	82610075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_82610261_82610760_82610834_82613206_82613310_82614639_82614774_82627139_82627288_82627916_82628014_82630448_82630532_82632101_82632262_82632835_82632947_82644459_82644564_82645787_82645962_82651175_82651311_82653013_82653078_82654847
transcript_14711.known	chr11	+	1591	1	FSM	ENSMUSG00000046010.8	ENSMUST00000056677.8	1591	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	562	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGATGGGTATTCTTTTTT	NA	False	NA	NA	False	CATAAA	-21	NA	82655170	82656761	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_82655200_82656800
transcript_14712.known	chr11	-	686	3	FSM	ENSMUSG00000085175.8	ENSMUST00000152784.8	686	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	9	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGTTCATTATGTCTTTG	NA	False	NA	4	True	AATAAA	-22	NA	82671868	82670426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_82670762_82670960_82671125_82671681
transcript_14713.nnic	chr11	-	646	3	NNC	ENSMUSG00000085175.8	novel	686	3	NA	NA	-77	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	1	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGTTCATTATGTCTTTG	NA	False	NA	4	True	AATAAA	-22	NA	82671945	82670426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_82670762_82670960_82671125_82671798
transcript_14714.known	chr11	-	655	2	FSM	ENSMUSG00000085175.8	ENSMUST00000136051.2	655	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTTTCTCTTCTTAGACC	NA	False	NA	NA	False	NA	NA	NA	82671868	82670656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_82671125_82671681
transcript_14717.known	chr11	+	3056	20	FSM	ENSMUSG00000020697.17	ENSMUST00000080461.12	3056	20	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_19	43.9286124489467	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGTGTGTCTGTCTCTC	NA	False	NA	NA	False	ATTAAA	-34	NA	82672010	82691479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_82672103_82674171_82674726_82676140_82676285_82678453_82678655_82679589_82679742_82680372_82680540_82680642_82680721_82681298_82681468_82682862_82683019_82684699_82684832_82685329_82685410_82686190_82686279_82686534_82686613_82686853_82686978_82688131_82688275_82688599_82688675_82689081_82689229_82690247_82690447_82691001_82691124_82691324
transcript_14721.known	chr11	+	1785	7	FSM	ENSMUSG00000020697.17	ENSMUST00000173009.8	1785	7	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_3	26.4601377337475	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACTATTTGTGGCTCCAT	NA	False	NA	NA	False	NA	NA	NA	82672023	82681130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_82672103_82674171_82674726_82676140_82676285_82678453_82678655_82679589_82679742_82680372_82680540_82680642
transcript_14724.known	chr11	-	3489	7	FSM	ENSMUSG00000020696.19	ENSMUST00000108173.10	3489	7	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_4	36.5942466637706	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGCCTGTCCCATCTGGT	2743	False	NA	NA	False	AATAAA	-11	NA	82762036	82694647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_82697016_82699338_82699363_82700833_82701045_82701853_82701938_82703225_82703637_82709241_82709430_82761833
transcript_14730.known	chr11	-	3426	10	FSM	ENSMUSG00000018841.18	ENSMUST00000018985.15	3426	10	0	0	0	0	multi-exon	TRUE	canonical	3	107	junction_4	12.9099444873581	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCCTAGGGGTGCTAGGA	NA	False	NA	NA	False	NA	NA	NA	82781440	82767524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_82769850_82770010_82770179_82772426_82772498_82772596_82772688_82773712_82773809_82774318_82774454_82774708_82774791_82780517_82780637_82780795_82780858_82781163
transcript_14736.known	chr11	-	1292	9	FSM	ENSMUSG00000018841.18	ENSMUST00000135963.8	1292	9	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	41.6186181293901	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGGGTCTCAAGTTTTCT	NA	False	NA	-107	True	NA	NA	NA	82781415	82769562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_82769850_82770010_82770179_82772596_82772688_82773712_82773809_82774318_82774454_82774708_82774791_82780517_82780637_82780795_82780858_82781163
transcript_14737.known	chr11	-	1201	8	FSM	ENSMUSG00000018841.18	ENSMUST00000021033.16	1201	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	46.160323982876	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGGGTCTCAAGTTTTCT	NA	False	NA	-107	True	NA	NA	NA	82781415	82769562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_82769850_82770010_82770179_82773712_82773809_82774318_82774454_82774708_82774791_82780517_82780637_82780795_82780858_82781163
transcript_14738.known	chr11	-	1386	10	FSM	ENSMUSG00000018841.18	ENSMUST00000100718.4	1386	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	41.0088819045549	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGGGTCTCAAGTTTTCT	NA	False	NA	-107	True	NA	NA	NA	82781415	82769562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_82769850_82770010_82770179_82772426_82772498_82772596_82772688_82773712_82773809_82774318_82774454_82774708_82774791_82780494_82780637_82780795_82780858_82781163
transcript_14740.nic	chr11	-	1742	13	NIC	ENSMUSG00000020692.15	novel	1783	13	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_4	66.8112494686004	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGTTGCAGCTTCTTGT	8276	False	NA	-10	True	AATAAA	-18	NA	82799264	82791597	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_82791877_82792382_82792454_82792534_82792695_82793820_82793960_82794915_82794963_82795065_82795202_82795617_82795811_82796103_82796202_82796332_82796410_82797250_82797331_82798378_82798597_82798917_82799062_82799164
transcript_14744.known	chr11	-	1783	13	FSM	ENSMUSG00000020692.15	ENSMUST00000103213.10	1783	13	0	0	0	0	multi-exon	TRUE	canonical	3	193	junction_4	34.6180548590215	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCAGCTTCTTGTTCTA	8303	False	NA	-6	True	AATAAA	-22	NA	82799237	82791593	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_82791877_82792382_82792454_82792534_82792695_82793820_82794024_82794915_82794963_82795065_82795202_82795617_82795811_82796103_82796202_82796332_82796410_82797250_82797331_82798378_82798597_82798917_82799062_82799164
transcript_14766.known	chr11	-	539	2	FSM	ENSMUSG00000020692.15	ENSMUST00000124109.2	539	2	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGTTGCAGCTTCTTGT	NA	False	NA	-10	True	AATAAA	-18	NA	82792642	82791597	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_82791877_82792382
transcript_14767.known	chr11	-	2128	5	FSM	ENSMUSG00000069793.13	ENSMUST00000138797.2	2128	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	14.1133801762724	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATATCTGCCAGGCAG	8620	False	NA	NA	False	NA	NA	NA	82881963	82872809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_82872813_82872979_82873704_82875382_82875518_82878064_82879135_82881767
transcript_14769.known	chr11	-	2128	5	FSM	ENSMUSG00000035208.17	ENSMUST00000130822.3	2128	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6.75925291729789	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAATCTGCCAGGCAG	NA	False	NA	NA	False	NA	NA	NA	82910934	82894712	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_82894716_82894882_82895607_82904190_82904326_82907478_82908549_82910738
transcript_14770.known	chr11	-	498	1	FSM	ENSMUSG00000082419.4	ENSMUST00000119608.2	498	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	842	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGCAACAAGAAAATATTT	NA	False	NA	NA	False	NA	NA	NA	82918823	82918325	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_82918300_82918800
transcript_14771.known	chr11	+	1966	4	FSM	ENSMUSG00000018986.11	ENSMUST00000214041.2	1966	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	4.49691252107735	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAACAAATGGAGTATGG	3797	False	NA	NA	False	NA	NA	NA	83082158	83105966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_83082235_83084868_83085036_83103369_83104440_83105313
transcript_14773.known	chr11	+	1816	3	FSM	ENSMUSG00000018986.11	ENSMUST00000019130.8	1816	3	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	4.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGGCACAATGATGTTTC	3794	False	NA	NA	False	CATAAA	-14	NA	83082155	83105980	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_83082235_83103369_83104440_83105313
transcript_14775.known	chr11	+	1428	4	FSM	ENSMUSG00000087107.9	ENSMUST00000143673.2	1428	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	6.23609564462324	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATGTATGTATGTATGTA	NA	False	NA	NA	False	NA	NA	NA	83114401	83117430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_83114478_83115035_83115137_83115277_83115458_83116359
transcript_14777.known	chr11	+	191	1	FSM	ENSMUSG00000119838.1	ENSMUST00000084010.3	191	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGGGTTTCTATTACTGGT	NA	False	NA	NA	False	NA	NA	NA	83162323	83162514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_83162300_83162500
transcript_14778.known	chr11	+	308	3	FSM	ENSMUSG00000093483.2	ENSMUST00000177533.2	308	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	5.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGTATTTGTTTGGGTA	5891	False	NA	7	True	ATTAAA	-16	NA	83182567	83185455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_83182660_83182792_83182894_83185340
transcript_1478.known	chr1	+	1485	2	FSM	ENSMUSG00000037216.6	ENSMUST00000041621.5	1485	2	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	0	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTCCTTTTCCTTAAGG	NA	False	NA	15	True	ATTAAA	-15	NA	37911286	37915309	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_37911407_37913944
transcript_14780.known	chr11	+	356	3	FSM	ENSMUSG00000093483.2	ENSMUST00000176545.2	356	3	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	166	2735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTATTTGTTTGGGTAAGA	5869	False	NA	10	True	ATTAAA	-19	NA	83182545	83185458	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_83182660_83182799_83182924_83185340
transcript_14781.known	chr11	+	471	2	FSM	ENSMUSG00000093483.2	ENSMUST00000176016.2	471	2	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_1	0	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTATTTGTTTGGGTAA	5892	False	NA	8	True	ATTAAA	-17	NA	83182568	83185456	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_83182924_83185340
transcript_14782.known	chr11	+	5625	22	FSM	ENSMUSG00000035152.15	ENSMUST00000018875.13	5625	22	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_14	47.3312733095844	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGTTTGTGGTATGGACT	1959	False	NA	NA	False	AATAAA	-16	NA	83193308	83295861	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_83193664_83199040_83199101_83207245_83207352_83212764_83212901_83215336_83215583_83223811_83224003_83226206_83226429_83227167_83227289_83227591_83227688_83230138_83230255_83232099_83232266_83233425_83233525_83237473_83237734_83241804_83241998_83255620_83255663_83256472_83256620_83258708_83258855_83260478_83260609_83280528_83280614_83281520_83281608_83288580_83288736_83293395
transcript_14784.known	chr11	+	3269	21	FSM	ENSMUSG00000035152.15	ENSMUST00000065692.14	3269	21	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_14	24.9631728752577	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATAAACTGCACCTTAT	2250	False	NA	NA	False	ATTAAA	-20	NA	83193599	83293838	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_83193664_83199040_83199101_83207245_83207352_83212764_83212901_83215336_83215583_83223811_83224003_83226206_83226429_83227167_83227289_83227591_83227688_83230138_83230255_83232099_83232266_83233425_83233525_83237473_83237734_83241804_83241998_83256472_83256620_83258708_83258855_83260478_83260609_83280528_83280614_83281520_83281608_83288580_83288736_83293395
transcript_1479.known	chr1	+	775	2	FSM	ENSMUSG00000037216.6	ENSMUST00000144440.2	775	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTGCAGAGTACGCGGC	NA	False	NA	NA	False	NA	NA	NA	37911642	37914635	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_37911727_37913944
transcript_14790.known	chr11	-	2337	4	FSM	ENSMUSG00000018733.11	ENSMUST00000175741.8	2337	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	26.4112770527204	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTGACTTCTTGAAGTTT	2473	False	NA	-7	True	AATAAA	-16	NA	83189721	83185900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_83187267_83188313_83188868_83189141_83189380_83189542
transcript_14791.known	chr11	-	2729	4	FSM	ENSMUSG00000018733.11	ENSMUST00000018877.9	2729	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	22.7596133534821	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAATACCATGGTTAATTAA	2391	False	NA	NA	False	AATAAA	-14	NA	83189803	83185467	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_83187267_83188313_83188868_83189141_83189380_83189665
transcript_14805.known	chr11	+	2068	16	FSM	ENSMUSG00000020680.16	ENSMUST00000021018.11	2068	16	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	25.2651714597168	817	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGAGTGCATTATTTGTC	8660	False	NA	41	True	AATAAA	-21	NA	83363917	83397569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_83364033_83372759_83372800_83375476_83375529_83375635_83375721_83375802_83375906_83378048_83378240_83379750_83379872_83388087_83388123_83388719_83388753_83389898_83390009_83391940_83392071_83393585_83393679_83395071_83395154_83395253_83395343_83395467_83395931_83397243
transcript_14814.known	chr11	+	881	7	FSM	ENSMUSG00000020680.16	ENSMUST00000134185.8	881	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	8.74960316560446	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATTGTAAAAAAAAAGGC	8654	False	NA	NA	False	CATAAA	-34	NA	83363911	83380039	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_83364033_83372759_83372800_83375476_83375529_83375635_83375721_83375802_83375906_83378048_83378240_83379750
transcript_14824.known	chr11	+	649	2	FSM	ENSMUSG00000020680.16	ENSMUST00000152405.2	649	2	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGAGTTACAGATGATAAT	8679	False	NA	NA	False	NA	NA	NA	83363936	83373312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_83364033_83372759
transcript_14826.nnic	chr11	-	1223	5	NNC	ENSMUSG00000019122.9	novel	3006	4	NA	NA	-3706	658	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_4	25.1445819213603	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGTCTGTCTGCCTCTTTT	NA	False	NA	-1	True	AATAAA	-18	NA	83473168	83465485	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_83466322_83466668_83466778_83467200_83467273_83469214_83469351_83473098
transcript_14827.nnic	chr11	-	1087	4	NNC	ENSMUSG00000019122.9	novel	3006	4	NA	NA	-3706	658	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_3	12.9614813968157	165	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGTCTGTCTGCCTCTTTT	NA	False	NA	-1	True	AATAAA	-18	NA	83473168	83465485	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_83466322_83466668_83466778_83467200_83467273_83473098
transcript_14828.nnic	chr11	+	756	4	NNC	ENSMUSG00000051832.8	novel	861	2	NA	NA	-6	-17057	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0.471404520791032	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGATGTAGTCTGTTTGAC	NA	False	NA	NA	False	ATTAAA	-16	NA	83472875	83475840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_83473008_83473159_83473221_83474764_83475009_83475521
transcript_14829.known	chr11	-	766	3	FSM	ENSMUSG00000000982.6	ENSMUST00000001008.6	766	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGTGTTGAGTTTTATTT	NA	False	NA	NA	False	AATAAA	-19	NA	83540181	83538669	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_83539170_83539394_83539507_83540027
transcript_14830.known	chr11	+	5614	20	FSM	ENSMUSG00000000976.14	ENSMUST00000001002.8	5614	20	0	0	0	0	multi-exon	TRUE	canonical	3	50	junction_5	6.60059596066985	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGTTGGTTTCTGGGTCTCT	4017	False	NA	11	True	AATAAA	-20	NA	83644521	83674580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_83644768_83646535_83646644_83648135_83648277_83649114_83649231_83650129_83650245_83651724_83651827_83655711_83655850_83656678_83656987_83657903_83658082_83659881_83660089_83660493_83660594_83663070_83663427_83664695_83664819_83665247_83665335_83666526_83666662_83667439_83667563_83668063_83668189_83669670_83669768_83670226_83670432_83671976
transcript_14834.known	chr11	+	4067	20	FSM	ENSMUSG00000000976.14	ENSMUST00000125831.8	4067	20	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	14.4999761199536	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAGAATTGTGTTTTCAAG	4035	False	NA	4	True	AATAAA	-23	NA	83644539	83672847	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_83644972_83646535_83646644_83648135_83648277_83649114_83649231_83650129_83650245_83651724_83651827_83655711_83655850_83656678_83656987_83657903_83658082_83659881_83660089_83660493_83660594_83663070_83663427_83664695_83664819_83665247_83665335_83666526_83666662_83667439_83667563_83668063_83668189_83669670_83669768_83670226_83670432_83671976
transcript_14837.nnic	chr11	-	496	3	Antisense	novelGene_ENSMUSG00000000976.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	2.5	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	4554	False	NA	NA	False	NA	NA	NA	83644803	83643916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr11_-_83644015_83644193_83644240_83644451
transcript_14840.nnic	chr11	-	416	3	Antisense	novelGene_ENSMUSG00000000976.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	2.5	27	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	4546	False	NA	NA	False	NA	NA	NA	83644811	83643916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr11_-_83644015_83644193_83644240_83644539
transcript_14846.known	chr11	+	3194	15	FSM	ENSMUSG00000020677.8	ENSMUST00000049257.8	3194	15	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_7	30.0713437392763	487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTAATTGTTTTGTTCT	NA	False	NA	NA	False	AATAAA	-26	NA	83832887	83853914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_83833091_83834068_83834268_83835361_83835496_83836930_83837117_83839270_83839415_83840408_83840521_83842115_83842189_83842937_83843142_83844052_83844144_83845906_83846030_83846114_83846266_83846797_83846874_83848291_83848364_83850272_83850360_83852575
transcript_14854.nnic	chr11	+	1129	6	NNC	ENSMUSG00000020677.8	novel	3194	15	NA	NA	18	-3060	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_5	140.667835698144	56	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGATCAGTGTCTTCAGC	NA	False	NA	NA	False	NA	NA	NA	83832905	83839927	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_83833091_83834068_83834268_83835361_83835496_83836930_83837117_83839270_83839415_83839646
transcript_14857.nic	chr11	+	864	4	ISM	ENSMUSG00000020677.8	ENSMUST00000049257.8	3194	15	18	16638	18	-5711	5prime_fragment	FALSE	canonical	3	311	junction_3	37.1872140511882	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGATGCCATCATTTCCTT	NA	False	NA	NA	False	TATAAA	-16	NA	83832905	83837276	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_83833091_83834068_83834268_83835361_83835496_83836930
transcript_14861.known	chr11	-	1571	4	FSM	ENSMUSG00000018648.16	ENSMUST00000018792.12	1571	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	40.077702307171	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTTATTAATCATTTTG	NA	False	NA	-14	True	AATAAA	-15	NA	83959627	83938866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_83940137_83941657_83941747_83959306_83959407_83959515
transcript_14862.known	chr11	-	710	4	FSM	ENSMUSG00000018648.16	ENSMUST00000138208.2	710	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	40.077702307171	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGACATTCCTCATGCCCC	NA	False	NA	NA	False	NA	NA	NA	83960087	83939805	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_83940137_83941657_83941747_83959306_83959407_83959897
transcript_14863.known	chr11	-	1447	3	FSM	ENSMUSG00000018648.16	ENSMUST00000100705.11	1447	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_2	13.5	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTTATTAATCATTTTG	NA	False	NA	-14	True	AATAAA	-15	NA	83959183	83938866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_83940137_83941657_83941747_83959095
transcript_14864.known	chr11	-	1454	3	FSM	ENSMUSG00000018648.16	ENSMUST00000164891.8	1454	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	42	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGCCCTTTATTAATCAT	NA	False	NA	-18	True	AATAAA	-11	NA	83959405	83938870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_83940137_83941657_83941747_83959306
transcript_14866.known	chr11	-	2151	16	FSM	ENSMUSG00000018651.15	ENSMUST00000018795.13	2151	16	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_10	48.5691259958423	1328	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGGGTGTGTCAGATAT	NA	False	NA	-4	True	ATTAAA	-17	NA	84020426	83969745	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_83970604_83972863_83972938_83975539_83975584_83976464_83976598_83977936_83978009_83981374_83981486_83982801_83982846_83984409_83984474_83993878_83993952_83995017_83995107_83997014_83997173_84000779_84000872_84009073_84009134_84011907_84012015_84017813_84017922_84020362
transcript_14874.known	chr11	-	1822	13	FSM	ENSMUSG00000018697.15	ENSMUST00000018841.3	1822	13	0	0	0	0	multi-exon	TRUE	canonical	3	481	junction_8	26.3136793744665	695	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTCTTCACTGTGAGT	NA	False	NA	0	True	AATAAA	-44	NA	84404348	84313680	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_84313846_84333391_84333464_84336452_84336534_84339945_84340014_84358286_84358371_84361389_84361555_84361913_84362113_84363877_84363993_84400484_84400623_84401024_84401244_84402308_84402405_84402966_84403156_84404117
transcript_14882.known	chr11	-	1992	9	FSM	ENSMUSG00000018697.15	ENSMUST00000148434.2	1992	9	0	0	0	0	multi-exon	FALSE	canonical	3	481	junction_4	26.8348537353942	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84404348	84357730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_84358371_84361389_84361555_84361913_84362113_84363877_84363993_84400484_84400623_84401024_84401244_84402308_84402405_84402966_84403156_84404117
transcript_14892.known	chr11	-	2477	5	FSM	ENSMUSG00000018405.8	ENSMUST00000018549.8	2477	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	44.51404272811	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCCTGGAGTTGATTTGT	NA	False	NA	-4	True	AATAAA	-23	NA	84710341	84703886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_84705338_84705514_84705635_84705733_84705867_84709425_84709520_84709662
transcript_14893.nnic	chr11	-	2154	5	NNC	ENSMUSG00000018405.8	novel	2477	5	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_4	41.1035278291292	59	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCCTGGAGTTGATTTGT	NA	False	NA	-4	True	AATAAA	-23	NA	84710331	84703886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_84705338_84705514_84705635_84705733_84705867_84709425_84709520_84709975
transcript_14894.nnic	chr11	-	1034	3	NNC	ENSMUSG00000018405.8	novel	2477	5	NA	NA	-37	-2825	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGACAGGTTATTGTGTGG	NA	False	NA	NA	False	ATTAAA	-33	NA	84710378	84708653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_84708878_84709425_84709520_84709662
transcript_14898.nic	chr11	-	1447	7	NIC	ENSMUSG00000034449.8	novel	1254	7	NA	NA	-89	130	combination_of_known_junctions	FALSE	canonical	3	14	junction_6	15.7585955380971	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTACCTTCAGAAGTATCT	NA	False	NA	NA	False	ATTAAA	-19	NA	84719909	84711551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_84712128_84712228_84712295_84712490_84712584_84713136_84713267_84713897_84713993_84716193_84716348_84719576
transcript_14899.known	chr11	-	1254	7	FSM	ENSMUSG00000034449.8	ENSMUST00000047560.8	1254	7	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_6	7.19760762722973	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCCCCCCCCCAGCTCT	NA	False	NA	NA	False	NA	NA	NA	84719790	84711681	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_84712128_84712228_84712295_84712490_84712584_84713136_84713267_84713897_84713993_84716193_84716404_84719576
transcript_1491.known	chr1	+	969	6	FSM	ENSMUSG00000026087.12	ENSMUST00000027256.12	969	6	0	0	0	0	multi-exon	FALSE	canonical	3	545	junction_1	191.904559612324	5418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAGTAGTCAGTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	37929557	37937616	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_37929666_37932023_37932105_37933019_37933097_37934410_37934492_37936768_37936916_37937141
transcript_14916.known	chr11	-	3034	14	FSM	ENSMUSG00000020530.15	ENSMUST00000108081.9	3034	14	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_13	134.623999724325	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGCCTCTTCCTTCCTCA	NA	False	NA	0	True	AATAAA	-16	NA	84761615	84723186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732240_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761430
transcript_14917.known	chr11	-	2950	14	FSM	ENSMUSG00000020530.15	ENSMUST00000172405.8	2950	14	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_13	140.403560365518	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGCCTCTTCCTTCCTCA	NA	False	NA	0	True	AATAAA	-16	NA	84761564	84723186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732240_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761463
transcript_14920.known	chr11	-	3056	14	FSM	ENSMUSG00000020530.15	ENSMUST00000168434.8	3056	14	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_13	138.817874810357	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGCCTCTTCCTTCCTCA	NA	False	NA	0	True	AATAAA	-16	NA	84761643	84723186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732246_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761430
transcript_14972.known	chr11	-	386	4	FSM	ENSMUSG00000020530.15	ENSMUST00000166425.2	386	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_3	242.907847181235	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTCCCATGTGTTGGTT	NA	False	NA	NA	False	NA	NA	NA	84761317	84751544	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_84751625_84753063_84753145_84760702_84760899_84761288
transcript_14979.known	chr11	-	1205	3	FSM	ENSMUSG00000020530.15	ENSMUST00000167429.2	1205	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	20.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGTGTAGTT	NA	False	NA	NA	False	NA	NA	NA	84761605	84759705	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_84760625_84760702_84760899_84761515
transcript_14981.known	chr11	-	2275	14	FSM	ENSMUSG00000020530.15	ENSMUST00000100686.10	2275	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	186.026211807073	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGACTACTGCGCCTTCTC	NA	False	NA	NA	False	AATAAA	-34	NA	84761566	84723797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730866_84731002_84731086_84731262_84732246_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761463
transcript_14982.known	chr11	+	4091	25	FSM	ENSMUSG00000020527.15	ENSMUST00000093969.11	4091	25	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_6	19.4264996561112	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAATTACAGTTGTAAGT	NA	False	NA	120	True	NA	NA	NA	84770973	84802052	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_84771338_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84784150_84784221_84785375_84785479_84786093_84786191_84786303_84786381_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218
transcript_14985.known	chr11	-	2675	2	FSM	ENSMUSG00000045140.9	ENSMUST00000067058.3	2675	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATATTTTGTCTGCATGTA	NA	False	NA	6	True	TTTAAA	-15	NA	84771021	84767140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_84769339_84770544
transcript_14986.known	chr11	-	1728	2	FSM	ENSMUSG00000045140.9	ENSMUST00000108080.3	1728	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAGGAAGATTCATGGAT	NA	False	NA	NA	False	ATTAAA	-12	NA	84771111	84767668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_84769339_84771053
transcript_14992.known	chr11	-	998	5	FSM	ENSMUSG00000020526.13	ENSMUST00000103195.5	998	5	0	0	0	0	multi-exon	FALSE	canonical	3	360	junction_2	22.0609949911603	1281	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTTCCCTTAGTAAAC	NA	False	NA	69	True	AATAAA	-16	NA	84807192	84801775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_84802475_84804047_84804129_84805036_84805112_84806924_84806957_84807081
transcript_14993.known	chr11	-	7053	34	FSM	ENSMUSG00000000804.15	ENSMUST00000108075.9	7053	34	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_26	11.8228429036788	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTCTCTTTGTGATCCT	7485	False	NA	-14	True	AGTAAA	-22	NA	85030864	84875267	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_84877410_84878094_84878188_84879159_84879585_84883278_84883568_84885211_84885404_84896633_84896755_84897818_84897906_84900784_84900970_84908455_84908668_84910590_84910703_84912981_84913134_84913556_84913732_84916344_84916519_84917601_84917708_84917926_84918066_84919886_84919962_84921308_84921391_84922894_84923050_84927347_84927466_84930026_84930168_84930820_84930997_84933313_84933507_84935535_84935639_84941212_84941275_84942016_84942101_84944473_84944537_84944759_84944876_84946591_84946700_84949953_84950086_84968090_84968251_84971956_84972076_84974614_84974721_84994724_84994853_85030536
transcript_14996.nic	chr11	-	970	5	ISM	ENSMUSG00000000804.15	ENSMUST00000108075.9	7053	34	59	92635	-11	4099	5prime_fragment	FALSE	canonical	3	36	junction_2	6.41774882649672	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTTGCTGCAGATTACC	7544	False	NA	NA	False	AATAAA	-19	NA	85030805	84967902	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_84968251_84971956_84972076_84974614_84974721_84994724_84994853_85030536
transcript_14999.nnic	chr11	+	592	3	NNC	ENSMUSG00000018479.13	novel	687	5	NA	NA	6879	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	2.5	13	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACAGTGGTACTTTACTT	NA	False	NA	NA	False	AATAAA	-36	NA	85068800	85071971	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_85068937_85069082_85069279_85071711
transcript_15.known	ERCC-00035	+	1114	1	FSM	ERCC-00035A	DQ459413	1114	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	228	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1114	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00035_+_0_1100
transcript_1500.known	chr1	+	662	5	FSM	ENSMUSG00000026087.12	ENSMUST00000193673.6	662	5	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_1	367.71796257458	1887	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTTCGTTCAGTTCTCTC	NA	False	NA	46	True	NA	NA	NA	37929612	37937445	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_37929666_37933019_37933097_37934410_37934492_37936768_37936916_37937141
transcript_15002.known	chr11	-	6463	13	FSM	ENSMUSG00000018481.10	ENSMUST00000018625.10	6463	13	0	0	0	0	multi-exon	TRUE	canonical	3	360	junction_12	22.6180544894756	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTCCGATTGAATTGTGA	NA	False	NA	0	True	AATAAA	-25	NA	85125956	85078087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_85082726_85085400_85085567_85086891_85087083_85088891_85088978_85091119_85091245_85092241_85092348_85092428_85092497_85095059_85095150_85100765_85100935_85105061_85105186_85105935_85106088_85107261_85107351_85125497
transcript_15003.known	chr11	+	635	4	FSM	ENSMUSG00000085628.5	ENSMUST00000136454.2	635	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	0.942809041582063	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGGCCTGAGCAGGACAA	NA	False	NA	NA	False	ATTAAA	-16	NA	85125996	85129130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_85126159_85127965_85128074_85128236_85128341_85128869
transcript_15005.nnic	chr11	+	555	3	NIC	ENSMUSG00000085628.5	novel	635	4	NA	NA	-28	0	intron_retention	FALSE	canonical	2	3	junction_2	1.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGGCCTGAGCAGGACAA	NA	False	NA	NA	False	ATTAAA	-16	NA	85125968	85129130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_85126159_85128236_85128341_85128869
transcript_15006.known	chr11	+	2899	6	FSM	ENSMUSG00000020525.18	ENSMUST00000020835.16	2899	6	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	8.90842298052804	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGCTGGCGTTTTGTTGG	7706	False	NA	3	True	AATAAA	-13	NA	85202069	85237892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_85202750_85217689_85217919_85223076_85223202_85227890_85228082_85230379_85230623_85236461
transcript_15018.known	chr11	+	253	2	FSM	ENSMUSG00000059439.16	ENSMUST00000140562.2	253	2	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAGAGCCAGCCGCTCAGCC	NA	False	NA	NA	False	AAGAAA	-34	NA	85712791	85716133	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_85712939_85716027
transcript_15020.known	chr11	-	507	5	FSM	ENSMUSG00000034329.17	ENSMUST00000149748.8	507	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	46.7085377634539	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAATGTTTGTGTTAC	NA	False	NA	NA	False	AATAAA	-9	NA	86091990	86085858	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_86085994_86087079_86087126_86088694_86088807_86089697_86089821_86091899
transcript_15022.nnic	chr11	-	692	4	NIC	ENSMUSG00000034329.17	novel	507	5	NA	NA	-14	188	combination_of_known_splicesites	FALSE	canonical	1	5	junction_1	49.0328687945364	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTTCTGATCTGTCCGTT	NA	False	NA	NA	False	AATAAA	-21	NA	86092033	86085670	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_86085994_86088694_86088807_86089697_86089821_86091899
transcript_15024.nnic	chr11	-	512	4	NIC	ENSMUSG00000034329.17	novel	507	5	NA	NA	-14	8	combination_of_known_splicesites	FALSE	canonical	1	5	junction_1	49.0328687945364	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGTGTTACTGATAGAG	NA	False	NA	NA	False	AATAAA	-17	NA	86092033	86085850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_86085994_86088694_86088807_86089697_86089821_86091899
transcript_15025.known	chr11	-	6931	20	FSM	ENSMUSG00000034329.17	ENSMUST00000044423.4	6931	20	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	12.1006856333757	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAAGGTCCGATGACTT	NA	False	NA	NA	False	AATAAA	-14	NA	86092019	85948963	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_85952872_85955603_85955928_85965104_85965188_85968682_85968796_85999592_85999715_86001168_86001329_86026084_86026247_86029588_86029730_86029839_86030006_86034082_86034238_86036887_86037021_86039183_86039384_86043413_86043636_86048413_86048705_86077790_86077920_86080557_86080686_86083640_86083815_86088694_86088807_86089697_86089821_86091934
transcript_15026.known	chr11	+	4423	2	FSM	ENSMUSG00000085208.4	ENSMUST00000128960.2	4423	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATGCATGATACGATGTA	NA	False	NA	NA	False	AATAAA	-17	NA	86092195	86102018	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_86092379_86097778
transcript_15034.nnic	chr11	+	696	3	Antisense	novelGene_ENSMUSG00000064526.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATAAGTAGCAAGCAGACT	NA	False	NA	NA	False	AATAAA	-16	NA	86327224	86336330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr11_+_86327286_86334656_86334737_86335775
transcript_15039.known	chr11	-	5531	15	FSM	ENSMUSG00000020516.16	ENSMUST00000154617.8	5531	15	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_9	22.8179351227342	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATAACAGTTATAAAACTTT	NA	False	NA	NA	False	AATAAA	-17	NA	86435631	86389696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_86393789_86395091_86395205_86397616_86397725_86402414_86402493_86402650_86402714_86403631_86403740_86404125_86404217_86404372_86404464_86406916_86407018_86408408_86408467_86410717_86410866_86423597_86423667_86424851_86424973_86426236_86426287_86435391
transcript_1504.known	chr1	+	587	4	FSM	ENSMUSG00000026087.12	ENSMUST00000195373.2	587	4	0	0	0	0	multi-exon	FALSE	canonical	3	1006	junction_1	22.6421435969889	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCGCTGATGGAGTCCTG	NA	False	NA	20	True	ATTAAA	-20	NA	37933015	37937419	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_37933097_37934410_37934492_37936768_37936916_37937141
transcript_1505.known	chr1	+	501	5	FSM	ENSMUSG00000026087.12	ENSMUST00000194857.6	501	5	0	0	0	0	multi-exon	FALSE	canonical	3	895	junction_1	64.9514241568266	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCACAGAAGAGACCATGTC	NA	False	NA	NA	False	NA	NA	NA	37932013	37937246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_37932105_37933019_37933097_37934410_37934492_37936768_37936916_37937141
transcript_15056.known	chr11	+	4452	9	FSM	ENSMUSG00000020521.8	ENSMUST00000020827.7	4452	9	0	0	0	0	multi-exon	TRUE	canonical	3	265	junction_2	21.9146070008111	964	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCATTTAATTTCTATTT	NA	False	NA	NA	False	AATAAA	-30	NA	86375482	86389851	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_86375626_86376886_86377332_86377481_86377559_86379892_86379994_86381183_86381338_86382504_86382664_86383986_86384053_86386053_86386156_86386646
transcript_15067.known	chr11	+	1871	9	FSM	ENSMUSG00000020513.16	ENSMUST00000069503.13	1871	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	8.83087623059003	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTCAGTCTGTTAAGTAAT	NA	False	NA	NA	False	AATAAA	-19	NA	86435816	86458186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_86436057_86439608_86439829_86440149_86440298_86443613_86443831_86445898_86446131_86448550_86448716_86452061_86452203_86456510_86456695_86457862
transcript_15070.known	chr11	+	1976	9	FSM	ENSMUSG00000020513.16	ENSMUST00000167178.9	1976	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	14.9702830634561	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTCAGTCTGTTAAGTAA	NA	False	NA	NA	False	AATAAA	-18	NA	86435816	86458185	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_86436163_86439608_86439829_86440149_86440298_86443613_86443831_86445898_86446131_86448550_86448716_86452061_86452203_86456510_86456695_86457862
transcript_15080.known	chr11	-	599	1	FSM	ENSMUSG00000083992.2	ENSMUST00000117851.2	599	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25464	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCAATAAAGACTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	86521852	86521253	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_86521300_86521900
transcript_15081.known	chr11	-	2787	12	FSM	ENSMUSG00000018171.10	ENSMUST00000018315.10	2787	12	0	0	0	0	multi-exon	FALSE	canonical	3	615	junction_5	55.9317766244166	869	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTGCCTCATGGATTTTG	9872	False	NA	NA	False	AATAAA	-16	NA	86574662	86474690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_86476278_86477321_86477425_86492833_86492896_86498001_86498119_86502167_86502249_86526000_86526133_86534323_86534492_86551948_86552060_86554308_86554400_86555479_86555616_86556602_86556705_86574565
transcript_15082.known	chr11	-	420	3	FSM	ENSMUSG00000018171.10	ENSMUST00000139040.2	420	3	0	0	0	0	multi-exon	FALSE	canonical	3	717	junction_1	4	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAATTAAATTTAGAACATT	9887	False	NA	NA	False	NA	NA	NA	86574647	86555379	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_86555616_86556602_86556705_86574565
transcript_15083.known	chr11	+	3132	3	FSM	ENSMUSG00000072582.10	ENSMUST00000108021.2	3132	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	3	262	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTTTGGTGTCTGATTCAT	NA	False	NA	NA	False	NA	NA	NA	86574810	86583283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_86574950_86578861_86578956_86580384
transcript_15084.known	chr11	-	6519	32	FSM	ENSMUSG00000047126.18	ENSMUST00000103186.11	6519	32	0	0	0	0	multi-exon	TRUE	canonical	3	813	junction_25	122.673691341487	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATGGTATTTCTTTTCAA	NA	False	NA	0	True	AATAAA	-18	NA	86648391	86585176	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_86586517_86588090_86588167_86593034_86593257_86593426_86593598_86594489_86594601_86594696_86594829_86594905_86595056_86595465_86595634_86595713_86595822_86595971_86596137_86596798_86596957_86597492_86597686_86597877_86598062_86598295_86598442_86599775_86599899_86602166_86602402_86602672_86602816_86603406_86603533_86608723_86608888_86610011_86610193_86610284_86610450_86611075_86611214_86612400_86612524_86613000_86613154_86615896_86616098_86617080_86617279_86621036_86621211_86621543_86621658_86623330_86623493_86624401_86624671_86627896_86628105_86648073
transcript_15086.known	chr11	-	6163	32	FSM	ENSMUSG00000047126.18	ENSMUST00000060766.16	6163	32	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_30	214.48063252277	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGTAGAATTGCAGTTT	NA	False	NA	-7	True	AATAAA	-19	NA	86648327	86585480	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_86586517_86588090_86588167_86593034_86593257_86593426_86593598_86594489_86594601_86594696_86594829_86594905_86595056_86595465_86595634_86595713_86595822_86595971_86596137_86596798_86596957_86597492_86597686_86597877_86598062_86598295_86598442_86599775_86599899_86602166_86602402_86602672_86602816_86603406_86603533_86608723_86608888_86610011_86610193_86610284_86610450_86611075_86611214_86612400_86612524_86613000_86613154_86615896_86616098_86617080_86617279_86621036_86621211_86621543_86621658_86623330_86623493_86624401_86624671_86627884_86628105_86648073
transcript_15087.known	chr11	-	3813	18	FSM	ENSMUSG00000018425.19	ENSMUST00000018569.14	3813	18	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_4	18.4312056730034	214	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGACAGTATGTGGATTTTT	8527	False	NA	-8	True	ATTAAA	-7	NA	86698572	86659671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_86661088_86661855_86662085_86662719_86662790_86664629_86664725_86666485_86666595_86667440_86667556_86675704_86675863_86676582_86676664_86679992_86680176_86680311_86680399_86683987_86684088_86688448_86688581_86689747_86689815_86690245_86690474_86691794_86691915_86695082_86695229_86697285_86697454_86698263
transcript_1509.known	chr1	-	1348	1	FSM	ENSMUSG00000058407.13	ENSMUST00000194692.2	1348	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	38036343	38034995	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_38035000_38036300
transcript_15090.known	chr11	-	4847	5	FSM	ENSMUSG00000018427.9	ENSMUST00000018571.5	4847	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	6.94172168845741	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGGGAGAATGTCTGTT	NA	False	NA	-8	True	AATAAA	-16	NA	86884533	86827250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_86831515_86835398_86835508_86836758_86836803_86862634_86862949_86884417
transcript_15094.known	chr11	-	2336	10	FSM	ENSMUSG00000061666.7	ENSMUST00000020804.8	2336	10	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_6	8.73053390247253	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGTGATTCCAGTGTGT	NA	False	NA	-8	True	AATAAA	-39	NA	86964888	86924692	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_86926122_86926417_86926470_86928656_86928717_86932613_86932748_86935952_86936043_86936581_86936701_86947617_86947664_86950250_86950387_86954724_86954768_86964661
transcript_15095.known	chr11	-	3218	4	FSM	ENSMUSG00000020495.14	ENSMUST00000020801.14	3218	4	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_2	5.65685424949238	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGGTATCTGTTTTGTC	NA	False	NA	1	True	AATAAA	-35	NA	86977600	86968557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_86968977_86970991_86971865_86974425_86974572_86975820
transcript_15096.known	chr11	-	3824	10	FSM	ENSMUSG00000020493.9	ENSMUST00000051395.9	3824	10	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_6	5.79484658240235	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTCCAGAGTTCATGTTG	NA	False	NA	-13	True	ATTAAA	-16	NA	86999534	86979978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_86982692_86987788_86987886_86987960_86988021_86989488_86989605_86990200_86990300_86992207_86992472_86994012_86994136_86994365_86994517_86996834_86996968_86999466
transcript_1510.known	chr1	-	3381	5	FSM	ENSMUSG00000058407.13	ENSMUST00000162031.8	3381	5	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_1	112.632976965008	2221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCGTTCTCTGTTTGATGG	NA	False	NA	NA	False	TATAAA	-17	NA	38036396	38024269	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_38026861_38029283_38029539_38033072_38033192_38034713_38034923_38036189
transcript_15104.known	chr11	+	3037	4	FSM	ENSMUSG00000020492.12	ENSMUST00000020794.6	3037	4	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_1	6.12825877028341	721	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGCCTCCATGTTATATT	NA	False	NA	13	True	AATAAA	-21	NA	87000059	87015461	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_87000131_87006929_87007017_87008493_87008671_87012759
transcript_15105.nnic	chr11	+	3614	25	NNC	ENSMUSG00000018548.16	novel	5632	24	NA	NA	-54	30188	at_least_one_novel_splicesite	TRUE	canonical	3	225	junction_24	67.5794671109502	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGTTTTGTCATAATTTG	1862	False	NA	5	True	NA	NA	NA	87017848	87141697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_87018321_87020541_87020644_87028415_87028457_87031310_87031428_87033952_87034041_87036289_87036413_87037759_87037884_87040121_87040190_87050646_87050772_87054644_87054696_87057427_87057510_87058265_87058343_87068674_87068855_87073246_87073362_87075709_87075929_87077204_87077342_87080899_87080986_87087646_87087842_87092143_87092453_87096758_87096882_87097589_87097780_87100594_87100714_87107262_87107374_87109077_87109157_87141416
transcript_1511.known	chr1	-	2605	4	FSM	ENSMUSG00000058407.13	ENSMUST00000194747.2	2605	4	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_1	99.432836069826	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTCACATGTCTGTTTTT	NA	False	NA	-5	True	NA	NA	NA	38036305	38026476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_38026861_38029283_38029539_38033072_38034923_38036189
transcript_15110.nic	chr11	+	720	4	ISM	ENSMUSG00000018548.16	ENSMUST00000041282.13	5632	24	-54	80094	-54	-8728	5prime_fragment	FALSE	canonical	3	425	junction_2	42.4290257043716	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGAAAGACAAGTGCGTAG	1862	False	NA	NA	False	AAGAAA	-2	NA	87017848	87031415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_87018321_87020541_87020644_87028415_87028457_87031310
transcript_15111.known	chr11	+	5632	24	FSM	ENSMUSG00000018548.16	ENSMUST00000041282.13	5632	24	0	0	0	0	multi-exon	FALSE	canonical	3	377	junction_12	47.8466359016781	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTTTTGTTGTTTTATT	1916	False	NA	13	True	AATAAA	-15	NA	87017902	87111509	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_87018321_87020541_87020644_87028415_87028457_87031310_87031428_87033952_87034041_87036289_87036413_87037759_87037884_87040121_87040190_87050646_87050772_87054644_87054696_87057427_87057510_87058265_87058343_87068674_87068855_87073246_87073362_87075709_87075929_87077204_87077342_87080899_87080986_87087646_87087842_87092143_87092453_87096758_87096882_87097589_87097780_87100594_87100714_87107262_87107374_87109077
transcript_15113.known	chr11	-	2061	10	FSM	ENSMUSG00000007646.14	ENSMUST00000153073.8	2061	10	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	58.9867112048589	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAATAGAAATAAAA	NA	False	NA	-38	True	NA	NA	NA	87295332	87269416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_87270314_87271657_87271719_87279073_87279154_87279444_87279506_87280659_87280727_87286091_87286224_87288449_87288584_87292215_87292383_87293423_87293683_87295129
transcript_15114.known	chr11	+	4763	31	FSM	ENSMUSG00000010342.17	ENSMUST00000060835.12	4763	31	0	0	0	0	multi-exon	FALSE	canonical	1	19	junction_12	24.6584671056414	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGGTGCCAGTTGTGATT	NA	False	NA	14	True	AATAAA	-20	NA	87295890	87446649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_87295997_87324634_87324772_87365229_87365345_87375525_87375692_87377074_87377212_87383865_87383948_87385777_87385909_87387025_87387140_87388655_87388780_87390309_87390489_87400393_87400546_87402250_87402442_87402958_87403110_87404767_87405688_87407493_87407601_87410480_87410564_87411463_87411746_87413320_87413422_87418669_87418737_87423172_87423255_87424364_87424428_87426358_87426487_87427520_87427727_87429391_87429489_87429821_87429897_87433315_87433394_87434109_87434204_87440257_87440351_87442356_87442467_87445753_87445806_87446309
transcript_15117.nnic	chr11	+	640	4	Intergenic	novelGene_10	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCAGGTTTCAGGCTGGGG	NA	False	NA	NA	False	NA	NA	NA	87368782	87373970	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr11_+_87369013_87370717_87370815_87373550_87373748_87373854
transcript_15118.nnic	chr11	+	482	3	NNC	ENSMUSG00000010342.17	novel	4763	31	NA	NA	-89	-49227	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_2	35.5	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATATTTATTTATATAAAT	NA	False	NA	NA	False	NA	NA	NA	87295801	87326365	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_87295997_87324634_87324772_87326215
transcript_15124.known	chr11	+	164	1	FSM	ENSMUSG00000119476.1	ENSMUST00000240501.1	164	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTACTTGGTTTTAAAAAT	NA	False	NA	NA	False	NA	NA	NA	87313692	87313856	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_87313700_87313900
transcript_15125.known	chr11	+	164	1	FSM	ENSMUSG00000118815.1	ENSMUST00000093684.3	164	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTTGTTGTTAAACGAGA	NA	False	NA	NA	False	NA	NA	NA	87317541	87317705	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_87317500_87317700
transcript_15126.known	chr11	+	216	1	FSM	ENSMUSG00002074955.1	ENSMUST00020183227.1	216	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	244	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGTTTTATTTTACATGTT	NA	False	NA	NA	False	NA	NA	NA	87353111	87353327	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_87353100_87353300
transcript_15127.known	chr11	+	1678	12	FSM	ENSMUSG00000020486.20	ENSMUST00000107962.8	1678	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.18560277821297	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGGTGTCTCTGTATTTT	6936	False	NA	6	True	AATAAA	-17	NA	87469226	87481365	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_87469364_87474143_87474441_87474746_87474841_87475224_87475312_87475943_87476068_87479543_87479679_87479793_87479912_87480000_87480103_87480293_87480391_87480481_87480645_87480781_87480882_87481141
transcript_15129.known	chr11	+	1303	11	FSM	ENSMUSG00000020486.20	ENSMUST00000122067.8	1303	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	2.11896201004171	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCAGGTGTCTCTGTATT	6959	False	NA	4	True	AATAAA	-15	NA	87469249	87481363	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_87469364_87474746_87474841_87475224_87475312_87475943_87476068_87479543_87479679_87479793_87479912_87480000_87480103_87480293_87480391_87480481_87480645_87480834_87480882_87481141
transcript_1513.known	chr1	+	673	4	FSM	ENSMUSG00000085391.2	ENSMUST00000133299.2	673	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGTTTTGTTTTGTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	38278780	38285747	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_38279049_38284657_38284791_38285149_38285204_38285529
transcript_15130.known	chr11	+	1653	12	FSM	ENSMUSG00000020486.20	ENSMUST00000107960.8	1653	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.25996416266474	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGGTGTCTCTGTATTTT	216	False	NA	6	True	AATAAA	-17	NA	87471886	87481365	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_87472052_87474143_87474441_87474746_87474841_87475224_87475312_87475943_87476068_87479543_87479679_87479793_87479912_87480000_87480103_87480293_87480391_87480481_87480645_87480834_87480882_87481141
transcript_15131.known	chr11	+	535	4	FSM	ENSMUSG00000020486.20	ENSMUST00000143950.2	535	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.942809041582063	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGGTGTCTCTGTATTTT	8632	False	NA	6	True	AATAAA	-17	NA	87480302	87481365	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_87480391_87480468_87480645_87480834_87480882_87481141
transcript_15132.known	chr11	+	5753	19	FSM	ENSMUSG00000018401.18	ENSMUST00000103179.10	5753	19	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	26.7350973833791	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGGGTCTTTTTATTT	NA	False	NA	20	True	AATAAA	-20	NA	87482987	87507128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_87483077_87484214_87484260_87488021_87488112_87488440_87488558_87489688_87489772_87491329_87491491_87491599_87491697_87491884_87491999_87493233_87493431_87493605_87493735_87494213_87494326_87494812_87495009_87495243_87495430_87495507_87495679_87495821_87495977_87501758_87503143_87504247_87504359_87504597_87504687_87504901
transcript_15146.known	chr11	+	706	5	FSM	ENSMUSG00000020485.15	ENSMUST00000093955.12	706	5	0	0	0	0	multi-exon	FALSE	canonical	3	512	junction_3	25.7972866790289	5568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAAGGGTACTGAGGCCT	NA	False	NA	2	True	AATAAA	-19	NA	87628377	87634443	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_87628495_87628992_87629100_87633621_87633678_87633883_87633938_87634071
transcript_15147.known	chr11	+	854	6	FSM	ENSMUSG00000020485.15	ENSMUST00000152700.8	854	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	256.77351888386	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTACTGAGGCCTGTGCCT	NA	False	NA	8	True	AATAAA	-25	NA	87628377	87634449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_87628495_87628992_87629100_87631330_87631473_87633621_87633678_87633883_87633938_87634071
transcript_15148.known	chr11	+	799	5	FSM	ENSMUSG00000020485.15	ENSMUST00000141169.2	799	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	233.365057367207	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTACTGAGGCCTGTGCCT	NA	False	NA	8	True	AATAAA	-25	NA	87628378	87634449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_87628495_87628992_87629100_87633533_87633678_87633883_87633938_87634071
transcript_15151.nnic	chr11	+	2462	18	NNC	ENSMUSG00000034121.13	novel	2194	7	NA	NA	-5064	0	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_1	31.5170080957562	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGTGGACTCTCGTTC	1392	False	NA	18	True	TATAAA	-20	NA	87738976	87754629	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_87739055_87744562_87744673_87745803_87745875_87746297_87746454_87747388_87747487_87747633_87747763_87748012_87748118_87748686_87748805_87749428_87749486_87750440_87750484_87750902_87750969_87751539_87751611_87751935_87752006_87752094_87752203_87752810_87752945_87753393_87753477_87753566_87753665_87753762
transcript_15159.known	chr11	+	2499	18	FSM	ENSMUSG00000034121.13	ENSMUST00000038196.7	2499	18	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	22.9555008070187	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGTGGACTCTCGTTC	6456	False	NA	18	True	TATAAA	-20	NA	87744040	87754629	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_87744156_87744562_87744673_87745803_87745875_87746297_87746454_87747388_87747487_87747633_87747763_87748012_87748118_87748686_87748805_87749428_87749486_87750440_87750484_87750902_87750969_87751539_87751611_87751935_87752006_87752094_87752203_87752810_87752945_87753393_87753477_87753566_87753665_87753762
transcript_1516.nnic	chr1	+	718	7	NNC	ENSMUSG00000026077.16	novel	484	3	NA	NA	4136	25469	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3.93347457373532	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTCTTTCAATGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	39237428	39352165	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_39237508_39302399_39302457_39326548_39326698_39331767_39331860_39339724_39339815_39350921_39351043_39352035
transcript_15160.nic	chr11	-	1780	6	ISM	ENSMUSG00000052234.3	ENSMUST00000049768.4	2689	13	5219	0	1451	0	3prime_fragment	FALSE	canonical	2	6	junction_4	6.99714227381436	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCCCGCTGTCTCTCTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	87761143	87754825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_87755231_87755520_87755734_87756230_87756469_87759376_87759548_87760072_87760329_87760646
transcript_15161.nic	chr11	-	1146	4	ISM	ENSMUSG00000052234.3	ENSMUST00000049768.4	2689	13	6696	0	2928	0	3prime_fragment	FALSE	canonical	3	12	junction_2	4.89897948556636	58	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCCCGCTGTCTCTCTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	87759666	87754825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_87755231_87755520_87755734_87756230_87756469_87759376
transcript_15163.nnic	chr11	-	888	4	NNC	ENSMUSG00000020483.15	novel	2443	3	NA	NA	-44301	-1108	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_2	286.479008344804	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTTTAGTTGCCTGGG	NA	False	NA	-24	True	AGTAAA	-16	NA	87922660	87872088	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_87872397_87874697_87874837_87892657_87892839_87922400
transcript_15164.known	chr11	-	2476	3	FSM	ENSMUSG00000020483.15	ENSMUST00000020775.9	2476	3	0	0	0	0	multi-exon	FALSE	canonical	3	615	junction_2	8	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTTGGGGTTTCTTTGGG	NA	False	NA	0	True	ATTAAA	-22	NA	87878359	87870350	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_87872397_87874697_87874837_87878068
transcript_15165.nnic	chr11	-	515	3	NNC	ENSMUSG00000020483.15	novel	2476	3	NA	NA	-14	-1108	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	300	137	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTTTAGTTGCCTGGG	NA	False	NA	-24	True	AGTAAA	-16	NA	87878373	87872088	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_87872397_87874697_87874837_87878305
transcript_15166.nnic	chr11	-	719	3	NNC	ENSMUSG00000020483.15	novel	2443	3	NA	NA	-44313	-1108	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_2	289.5	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTTTAGTTGCCTGGG	NA	False	NA	-24	True	AGTAAA	-16	NA	87922672	87872088	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_87872397_87874697_87874837_87922400
transcript_15168.known	chr11	-	2187	2	FSM	ENSMUSG00000020483.15	ENSMUST00000178105.3	2187	2	0	0	0	0	multi-exon	FALSE	canonical	3	631	junction_1	0	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTTGGGGTTTCTTTGGG	691	False	NA	0	True	ATTAAA	-22	NA	87874838	87870350	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_87872397_87874697
transcript_15169.known	chr11	+	5362	4	FSM	ENSMUSG00000018379.18	ENSMUST00000139129.9	5362	4	0	0	0	0	multi-exon	FALSE	canonical	3	1111	junction_3	192.19839287107	332	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGAGATTTAAGTTCTCC	6250	False	NA	20	True	AATAAA	-22	NA	87938198	87944581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_87938859_87939315_87939501_87939868_87940042_87940237
transcript_15170.nnic	chr11	-	1285	3	Intergenic	novelGene_11	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_1	15	16	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATGTGTTGGGTTGGTGTG	NA	False	NA	NA	False	NA	NA	NA	87922672	87891288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr11_-_87892121_87892657_87892839_87922400
transcript_15172.nnic	chr11	-	619	3	Intergenic	novelGene_12	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_2	1	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAGATTTGGGTGGAATCA	NA	False	NA	NA	False	NA	NA	NA	87922672	87892626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr11_-_87892839_87894566_87894702_87922400
transcript_15176.known	chr11	+	4583	6	FSM	ENSMUSG00000018377.11	ENSMUST00000018521.11	4583	6	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_5	9.15641851380768	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGGACTGTTAATGCCGC	NA	False	NA	17	True	ATTAAA	-22	NA	87959104	87975555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_87959260_87963882_87964578_87965487_87965552_87967016_87967201_87969228_87969382_87972223
transcript_15177.known	chr11	+	1844	6	FSM	ENSMUSG00000018378.14	ENSMUST00000133149.2	1844	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	7.56306816047562	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAGAAAAAGAAAAGAAAA	3479	False	NA	NA	False	NA	NA	NA	87990115	88076191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_87990170_88060390_88061001_88068095_88068224_88073306_88073434_88074064_88074258_88075459
transcript_15179.known	chr11	+	805	4	FSM	ENSMUSG00000018378.14	ENSMUST00000125297.2	805	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0.816496580927726	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGTTCGGTTTCTTTCCT	NA	False	NA	NA	False	NA	NA	NA	88078646	88083830	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_88078914_88079608_88079668_88080880_88080952_88083422
transcript_15181.known	chr11	+	1332	5	FSM	ENSMUSG00000023723.18	ENSMUST00000024486.14	1332	5	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_1	23.6999472573253	2092	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTCTCTATTTGTGGG	NA	False	NA	19	True	AATAAA	-19	NA	88095213	88102333	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_88095312_88096014_88096186_88100678_88100757_88100929_88101057_88101475
transcript_15186.known	chr11	+	1404	5	FSM	ENSMUSG00000023723.18	ENSMUST00000118784.8	1404	5	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	110.143939915004	542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTCTCTATTTGTGGG	NA	False	NA	19	True	AATAAA	-19	NA	88095236	88102333	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_88095407_88096014_88096186_88100678_88100757_88100929_88101057_88101475
transcript_15195.known	chr11	+	569	4	FSM	ENSMUSG00000023723.18	ENSMUST00000144070.3	569	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	131.053000304796	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACTTTGAAACTGTAAAT	NA	False	NA	NA	False	AATAAA	-27	NA	88095269	88101797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_88095312_88100678_88100757_88100929_88101057_88101475
transcript_15196.known	chr11	-	6436	14	FSM	ENSMUSG00000069769.14	ENSMUST00000107909.8	6436	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	5.72650848321069	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTAGTGTTCTTGTGT	1982	False	NA	-1	True	AATAAA	-20	NA	88609055	88230207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_88235487_88237878_88237952_88239609_88239765_88257610_88257674_88276870_88276946_88285390_88285506_88304733_88304817_88370831_88370881_88480880_88480974_88603263_88603306_88607335_88607421_88608115_88608198_88608530_88608572_88608854
transcript_15197.known	chr11	-	1855	14	FSM	ENSMUSG00000069769.14	ENSMUST00000092794.12	1855	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	5.8895153054003	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTACAAGGTTTTTTGAA	2110	False	NA	NA	False	NA	NA	NA	88608927	88234714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_88235487_88237878_88237952_88239609_88239819_88257610_88257674_88276870_88276946_88285390_88285506_88304733_88304817_88370831_88370881_88480880_88480974_88603263_88603306_88607335_88607421_88608115_88608198_88608530_88608572_88608854
transcript_15198.nnic	chr11	-	1015	10	NNC	ENSMUSG00000069769.14	novel	6436	14	NA	NA	-35540	-561	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_9	5.3356476460191	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTTGGTTCTGTTTG	NA	False	NA	1	True	AATATA	-36	NA	88516513	88235275	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_88235487_88237878_88237952_88239609_88239765_88257610_88257674_88276870_88276946_88285390_88285506_88304733_88304817_88370831_88370881_88480880_88480974_88516415
transcript_1520.nnic	chr1	+	1152	6	Fusion	ENSMUSG00000073702.12_ENSMUSG00000026077.16	novel	356	4	NA	NA	-26691	0	multi-exon	FALSE	non_canonical	0	0	junction_1	5606.88331963489	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGGGTTTGGTTTTCCTT	1500	False	NA	26	True	AATAAA	-15	NA	39353944	39410447	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr1_+_39354584_39375075_39375178_39407229_39407337_39409094_39409221_39410034_39410148_39410382
transcript_15200.nnic	chr11	-	1069	10	NNC	ENSMUSG00000069769.14	novel	1855	14	NA	NA	-35540	-561	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_9	5.75422550054402	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTTGGTTCTGTTTG	NA	False	NA	1	True	AATATA	-36	NA	88516513	88235275	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_88235487_88237878_88237952_88239609_88239819_88257610_88257674_88276870_88276946_88285390_88285506_88304733_88304817_88370831_88370881_88480880_88480974_88516415
transcript_15212.known	chr11	-	3758	11	FSM	ENSMUSG00000018428.16	ENSMUST00000018572.11	3758	11	0	0	0	0	multi-exon	FALSE	canonical	3	816	junction_2	49.6891336209437	307	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGAGTCCATTTTTTCTT	NA	False	NA	92	True	TATAAA	-7	NA	88755412	88721617	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88735084_88736692_88755222
transcript_15236.known	chr11	-	2097	13	FSM	ENSMUSG00000000278.11	ENSMUST00000000287.9	2097	13	0	0	0	0	multi-exon	FALSE	canonical	3	2404	junction_3	148.297748540638	3353	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGCTGAAAATTCTGTT	5201	False	NA	-9	True	AATAAA	-20	NA	88846291	88814845	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
transcript_15237.known	chr11	-	704	3	FSM	ENSMUSG00000057534.14	ENSMUST00000121228.2	704	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	27	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGCTCTCGCGTCATACT	6805	False	NA	0	True	AATAAA	-26	NA	88857757	88855483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_88856100_88857540_88857603_88857731
transcript_15239.known	chr11	-	819	2	FSM	ENSMUSG00000057534.14	ENSMUST00000061938.14	819	2	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	0	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGCTCTCGCGTCATACT	6819	False	NA	0	True	AATAAA	-26	NA	88857743	88855483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_88856100_88857540
transcript_1524.known	chr1	+	555	1	FSM	ENSMUSG00000092563.2	ENSMUST00000173076.2	555	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTCAGCATAAAATAAATGC	1535	False	NA	NA	False	AAGAAA	-34	NA	39353979	39354534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_39354000_39354500
transcript_15333.known	chr11	+	2607	7	FSM	ENSMUSG00000033983.15	ENSMUST00000036649.8	2607	7	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_2	22.1616535684702	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCACTCTGAGTTATGTT	NA	False	NA	15	True	AATAAA	-17	NA	88864760	88882439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_88865029_88871894_88872994_88873114_88873202_88873428_88873477_88875842_88875913_88878804_88878894_88881493
transcript_15334.known	chr11	+	3120	11	FSM	ENSMUSG00000033983.15	ENSMUST00000107898.8	3120	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	472.900412349154	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCACTCTGAGTTATGTT	9431	False	NA	15	True	AATAAA	-17	NA	88861077	88882439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_88861099_88861243_88861306_88863446_88863680_88864257_88864384_88864689_88865029_88871894_88872994_88873114_88873202_88873428_88873477_88875842_88875913_88878804_88878894_88881493
transcript_15337.known	chr11	-	581	2	FSM	ENSMUSG00000085152.2	ENSMUST00000128078.2	581	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTCCAGAGTTCAAATCCC	9039	False	NA	NA	False	NA	NA	NA	88887370	88883865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_88884304_88887227
transcript_15338.known	chr11	+	5590	9	FSM	ENSMUSG00000000275.17	ENSMUST00000107896.10	5590	9	0	0	0	0	multi-exon	TRUE	canonical	3	172	junction_5	154.213123630902	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACATTGTCCTGCCTTTTG	NA	False	NA	24	True	NA	NA	NA	88890201	88911119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_88890909_88895554_88895651_88899944_88900179_88901630_88901800_88904301_88904365_88905992_88906017_88906358_88906458_88906544_88906644_88907020
transcript_15339.known	chr11	+	5566	8	FSM	ENSMUSG00000000275.17	ENSMUST00000000284.7	5566	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	189.00091782522	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACATTGTCCTGCCTTTTG	NA	False	NA	24	True	NA	NA	NA	88890201	88911119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_88890909_88895554_88895651_88899944_88900179_88901630_88901800_88904301_88904365_88906358_88906458_88906544_88906644_88907020
transcript_15341.known	chr11	+	771	2	FSM	ENSMUSG00000063109.14	ENSMUST00000146524.8	771	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCGTGACTAACCTCCGC	2833	False	NA	NA	False	AATAAA	-26	NA	88957099	88958712	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_88957324_88958165
transcript_15344.known	chr11	-	2723	6	FSM	ENSMUSG00000020553.9	ENSMUST00000020864.9	2723	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	5.78273291792038	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTGGTATTTGATTTTC	NA	False	NA	NA	False	ATTAAA	-17	NA	89893720	89873490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_89875583_89876918_89876987_89878021_89878194_89879520_89879601_89881896_89882015_89893527
transcript_15346.known	chr11	+	2677	7	FSM	ENSMUSG00000003948.18	ENSMUST00000004050.7	2677	7	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_6	11.2249721603218	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGGCTGAGAGTAATGCT	NA	False	NA	29	True	AATAAA	-34	NA	90140301	90169415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_90140562_90148345_90148428_90150652_90150814_90155328_90155404_90156870_90156973_90158337_90158408_90167488
transcript_15350.known	chr11	+	2031	4	FSM	ENSMUSG00000110344.2	ENSMUST00000134929.8	2031	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.7851130197758	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGCAATCTTTTTTAATG	6347	False	NA	NA	False	AATAAA	-16	NA	90078509	90142081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_90079062_90099809_90099873_90139630_90140562_90141596
transcript_15351.known	chr11	-	5985	18	FSM	ENSMUSG00000020546.15	ENSMUST00000143203.8	5985	18	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_15	2.25532817796245	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTGCTAGATTTTCTTT	NA	False	NA	NA	False	AGTAAA	-32	NA	90528910	90367317	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_90371541_90385427_90385486_90426305_90426440_90428736_90428787_90430991_90431109_90439636_90439814_90462547_90462614_90466075_90466166_90483157_90483250_90485570_90485668_90491011_90491107_90496778_90496858_90497793_90498011_90498170_90498278_90510008_90510142_90512480_90512609_90513017_90513088_90528858
transcript_15354.known	chr11	-	1782	16	FSM	ENSMUSG00000020546.15	ENSMUST00000020858.14	1782	16	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_13	1.92527054375915	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGGTAGTTCAATTGCA	NA	False	NA	NA	False	ATTAAA	-22	NA	90528888	90426205	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_90426440_90428736_90428787_90430991_90431109_90439636_90439814_90462547_90462614_90466075_90466166_90483157_90483250_90485570_90485668_90491011_90491107_90496778_90496858_90497793_90498011_90498170_90498278_90510008_90510142_90512480_90512609_90513017_90513088_90528858
transcript_15358.known	chr11	-	2093	16	FSM	ENSMUSG00000020541.13	ENSMUST00000107868.8	2093	16	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_14	62.6969430408426	401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTGTGTTGTTGTTTTGTC	NA	False	NA	-2	True	ATTAAA	-17	NA	90578427	90536516	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_90537136_90537660_90537726_90540173_90540250_90540611_90540715_90542736_90542789_90547176_90547277_90548539_90548658_90548973_90549035_90552581_90552716_90561909_90562027_90563658_90563764_90564489_90564613_90565495_90565646_90574060_90574157_90575887_90575973_90578338
transcript_15362.nic	chr11	-	2009	15	NIC	ENSMUSG00000020541.13	novel	4308	16	NA	NA	-31	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_10	63.368093754842	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTGTTGTTTTGTCT	NA	False	NA	-1	True	ATTAAA	-18	NA	90578464	90536515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_90537136_90537660_90537726_90540173_90540250_90540611_90540715_90542736_90542789_90547176_90547277_90548539_90548658_90548973_90549035_90552581_90552716_90561909_90562027_90564489_90564613_90565495_90565646_90574060_90574140_90575887_90575973_90578338
transcript_15365.known	chr11	-	1826	14	FSM	ENSMUSG00000020541.13	ENSMUST00000107869.9	1826	14	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_10	65.6742003507921	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTGTGTTGTTGTTTTGTC	NA	False	NA	-2	True	ATTAAA	-17	NA	90578405	90536516	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_90537136_90537660_90537726_90540173_90540250_90540611_90540715_90542736_90542789_90547176_90547277_90548539_90548658_90548973_90549035_90552581_90552716_90561909_90562027_90565495_90565646_90574060_90574140_90575887_90575973_90578338
transcript_15370.known	chr11	+	1224	4	FSM	ENSMUSG00000020544.15	ENSMUST00000020851.15	1224	4	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_3	41.2876091178294	290	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAGGCCTGACAACTTGA	NA	False	NA	10	True	NA	NA	NA	90528998	90535757	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_90529379_90531202_90531359_90534478_90534605_90535195
transcript_15375.known	chr11	-	2613	14	FSM	ENSMUSG00000054079.13	ENSMUST00000066888.10	2613	14	0	0	0	0	multi-exon	TRUE	canonical	3	770	junction_1	49.2161035848126	825	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACATGCTTTGATCAAACT	NA	False	NA	NA	False	AAGAAA	-4	NA	93776592	93750068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_93750895_93751619_93751664_93752784_93752928_93757171_93757347_93759156_93759281_93760631_93760723_93761305_93761407_93766609_93766785_93766880_93767007_93768809_93768899_93770888_93770960_93772900_93773000_93774492_93774609_93776159
transcript_15377.known	chr11	+	5245	16	FSM	ENSMUSG00000059474.14	ENSMUST00000107853.8	5245	16	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	36.201657420621	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTATCAATTTTTCAACAT	NA	False	NA	19	True	AATAAA	-20	NA	93776677	93837811	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_93776889_93795984_93796185_93799629_93799764_93801108_93801233_93803201_93803285_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834600
transcript_15378.known	chr11	+	5232	16	FSM	ENSMUSG00000059474.14	ENSMUST00000107854.9	5232	16	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	35.1887608319601	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTATCAATTTTTCAACAT	NA	False	NA	19	True	AATAAA	-20	NA	93777044	93837811	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_93777243_93795984_93796185_93799629_93799764_93801108_93801233_93803201_93803285_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834600
transcript_1539.known	chr1	+	487	5	FSM	ENSMUSG00000073702.12	ENSMUST00000178079.8	487	5	0	0	0	0	multi-exon	FALSE	canonical	3	1086	junction_1	4596.75456164455	8979	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCAGGGTTTGGTTTTCC	NA	False	NA	24	True	AATAAA	-13	NA	39407009	39410445	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_39407088_39407229_39407337_39409094_39409221_39410034_39410148_39410382
transcript_154.known	SIRV2	-	1971	11	FSM	SIRV2A	SIRV202	1971	11	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_6	1003.16519576788	963	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCGCTCTATAGCTGTATC	NA	False	NA	NA	False	NA	NA	NA	5911	1035	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV2_-_1662_1741_1854_1973_2065_2674_2803_2881_3011_3105_3326_3665_3826_3966_4095_4338_4480_4687_4801_5788
transcript_1540.known	chr1	+	1049	5	FSM	ENSMUSG00000073702.12	ENSMUST00000086535.12	1049	5	0	0	0	0	multi-exon	FALSE	canonical	3	7651	junction_1	2133.80345568658	35184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGGTTTGAACATGTTT	NA	False	NA	10	True	ATTAAA	-23	NA	39406922	39410992	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_39407016_39407229_39407337_39409094_39409221_39410034_39410148_39410382
transcript_15404.known	chr11	-	1012	5	FSM	ENSMUSG00000020857.12	ENSMUST00000021217.11	1012	5	0	0	0	0	multi-exon	FALSE	canonical	3	5665	junction_4	866.911327645452	54356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCAGTGTTCAGTACTCA	NA	False	NA	-28	True	NA	NA	NA	93847085	93840639	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_93840873_93842725_93842839_93843625_93843728_93846320_93846451_93846651
transcript_15405.known	chr11	-	3181	5	FSM	ENSMUSG00000037601.12	ENSMUST00000135884.8	3181	5	0	0	0	0	multi-exon	FALSE	canonical	3	3315	junction_4	669.623401622136	19183	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATATTATGTGTAGGTGTG	385	False	NA	NA	False	NA	NA	NA	93859347	93847804	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_93850340_93851493_93851607_93854052_93854155_93856633_93856764_93859046
transcript_15406.known	chr11	-	734	4	FSM	ENSMUSG00000020857.12	ENSMUST00000072566.5	734	4	0	0	0	0	multi-exon	FALSE	canonical	3	6715	junction_3	620.302256072706	7369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTGCAGTGTTCAGTAC	NA	False	NA	-31	True	NA	NA	NA	93846609	93840642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_93840873_93842725_93842839_93843625_93843728_93846320
transcript_15407.known	chr11	-	991	8	FSM	ENSMUSG00000091228.2	ENSMUST00000170303.2	991	8	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_4	2495.73089372183	1663	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTGTGCAGTGTTCAGT	613	False	NA	-33	True	NA	NA	NA	93859119	93840644	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_93840873_93842725_93842839_93843625_93843728_93846320_93846451_93851493_93851607_93854052_93854155_93856633_93856764_93859046
transcript_15408.known	chr11	-	411	1	FSM	ENSMUSG00000081604.6	ENSMUST00000118048.2	411	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	69262	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATATTTTTGTTTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	93928454	93928043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_93928000_93928500
transcript_15409.known	chr11	+	695	6	FSM	ENSMUSG00000086003.8	ENSMUST00000132584.8	695	6	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	57.6520598070876	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTGTTTACCTGCTTGTA	NA	False	NA	15	True	AATAAA	-22	NA	94024310	94046602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_94024382_94029312_94029490_94040661_94040792_94042163_94042239_94046281_94046324_94046402
transcript_1541.known	chr1	+	630	4	FSM	ENSMUSG00000073702.12	ENSMUST00000179954.8	630	4	0	0	0	0	multi-exon	FALSE	canonical	3	8615	junction_3	1758.8270712798	2843	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCAGGGTTTGGTTTTCCT	NA	False	NA	25	True	AATAAA	-14	NA	39407009	39410446	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_39407337_39409094_39409221_39410034_39410148_39410382
transcript_15415.known	chr11	+	473	4	FSM	ENSMUSG00000086003.8	ENSMUST00000155965.2	473	4	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	38.4967531098403	562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTGTTTACCTGCTTGTA	NA	False	NA	15	True	AATAAA	-22	NA	94024327	94046602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_94024382_94029312_94029490_94046281_94046324_94046402
transcript_1542.known	chr1	+	703	4	FSM	ENSMUSG00000073702.12	ENSMUST00000194746.6	703	4	0	0	0	0	multi-exon	FALSE	canonical	3	7651	junction_1	2213.20918326508	516	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGGGTTTGGTTTTCCTT	NA	False	NA	26	True	AATAAA	-15	NA	39406958	39410447	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_39407016_39407229_39407337_39409094_39409221_39410034
transcript_15422.nnic	chr11	+	554	4	NNC	ENSMUSG00000086003.8	novel	695	6	NA	NA	15075	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	67.7314960380734	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTGTTTACCTGCTTGTA	NA	False	NA	15	True	AATAAA	-22	NA	94041560	94046602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_94041798_94042163_94042239_94046281_94046324_94046402
transcript_1543.known	chr1	+	356	4	FSM	ENSMUSG00000073702.12	ENSMUST00000195123.6	356	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	5182.47514867816	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGGGTTTGGTTTTCCTT	NA	False	NA	26	True	AATAAA	-15	NA	39407229	39410447	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_39407337_39409094_39409221_39410089_39410148_39410382
transcript_15434.known	chr11	-	5244	12	FSM	ENSMUSG00000020863.16	ENSMUST00000166312.8	5244	12	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	82.4268270539502	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTTGGTGTAGGTAGTGA	NA	False	NA	NA	False	AATAAA	-24	NA	94212784	94178715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_94182405_94183752_94183859_94183963_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
transcript_15436.known	chr11	-	3373	11	FSM	ENSMUSG00000020863.16	ENSMUST00000021226.14	3373	11	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	62.20843994186	388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGATTGTCTGTGTCAT	NA	False	NA	-5	True	AATAAA	-23	NA	94212814	94181964	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_94183859_94183963_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
transcript_15439.known	chr11	-	2050	11	FSM	ENSMUSG00000020863.16	ENSMUST00000107821.9	2050	11	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_1	26.33172990899	863	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAATATGAGGCATACTAG	NA	False	NA	73	True	AATAAA	-27	NA	94212814	94181886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_94182405_94183910_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
transcript_15440.known	chr11	-	3478	10	FSM	ENSMUSG00000020863.16	ENSMUST00000107820.2	3478	10	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_9	26.1850018328748	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGATTGTCTGTGTCAT	NA	False	NA	-5	True	AATAAA	-23	NA	94212814	94181964	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
transcript_15445.nic	chr11	-	1048	8	ISM	ENSMUSG00000020863.16	ENSMUST00000021226.14	3373	11	-43	5917	-43	0	5prime_fragment	FALSE	canonical	3	230	junction_7	21.9981446341945	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAAAGACGAAGAGAA	NA	False	NA	6	True	NA	NA	NA	94212857	94187881	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
transcript_15451.known	chr11	-	1176	6	FSM	ENSMUSG00000020863.16	ENSMUST00000132623.9	1176	6	0	0	0	0	multi-exon	FALSE	canonical	2	19	junction_1	126.523673674139	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAATATGAGGCATACTAG	NA	False	NA	73	True	AATAAA	-27	NA	94187893	94181886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_94182405_94183232_94183299_94183752_94183859_94183963_94184105_94186745_94186907_94187709
transcript_15452.known	chr11	+	1215	5	FSM	ENSMUSG00000020864.14	ENSMUST00000021227.6	1215	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	194.973075064225	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATGAAAAGAAAATTTTAA	4247	False	NA	NA	False	AATAAA	-10	NA	94219079	94230335	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_94219214_94224726_94224876_94225253_94225734_94229165_94229348_94230065
transcript_15453.known	chr11	+	3487	5	FSM	ENSMUSG00000020864.14	ENSMUST00000107818.9	3487	5	0	0	0	0	multi-exon	FALSE	canonical	3	454	junction_3	18.6061145863396	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCCCATTCTCTCTCGTT	3994	False	NA	17	True	ATTAAA	-18	NA	94218826	94232667	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_94219214_94224726_94224876_94225253_94225734_94229165_94229348_94230378
transcript_15457.nnic	chr11	-	1020	4	NNC	ENSMUSG00000020865.17	novel	5005	31	NA	NA	-432	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_3	32.8937684067971	97	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGTCACATGTTACCTT	503	False	NA	-4	True	AATAAA	-17	NA	94242444	94234120	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_94234602_94236772_94236968_94241761_94241929_94242267
transcript_15458.nic	chr11	-	1468	4	ISM	ENSMUSG00000020865.17	ENSMUST00000178136.8	5005	31	40553	0	-1237	0	intron_retention	FALSE	canonical	3	69	junction_3	10.6249183003395	154	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGTCACATGTTACCTT	NA	False	NA	-4	True	AATAAA	-17	NA	94243249	94234120	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_94234602_94236772_94236968_94241761_94241929_94242624
transcript_1546.known	chr1	+	635	5	FSM	ENSMUSG00000003135.16	ENSMUST00000195567.2	635	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	347.966233994047	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGTTTCCCATGGATGAA	214	False	NA	27	True	AGTAAA	-15	NA	39579114	39584482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_39579157_39581480_39581684_39583972_39584070_39584149_39584234_39584273
transcript_15461.known	chr11	-	2627	16	FSM	ENSMUSG00000020867.14	ENSMUST00000041705.8	2627	16	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.997775303139718	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGGATCTTAGCCTCTT	NA	False	NA	NA	False	AATAAA	-22	NA	94376174	94369729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_94370093_94370264_94370346_94371241_94371442_94372448_94372661_94372915_94373085_94373329_94373523_94373604_94373815_94373911_94373987_94374206_94374312_94374408_94374540_94374774_94374977_94375093_94375238_94375312_94375468_94375579_94375645_94375742_94375926_94376035
transcript_15464.nnic	chr11	+	1042	3	Antisense	novelGene_ENSMUSG00000010080.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTCTCTCATTCATTTC	NA	False	NA	NA	False	AGTAAA	-18	NA	94381978	94386427	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr11_+_94382230_94384645_94384745_94385735
transcript_15469.known	chr11	-	4203	9	FSM	ENSMUSG00000039096.11	ENSMUST00000132274.8	4203	9	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_8	12.2270192606375	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGCGTAGCTCCTCCTT	3195	False	NA	1	True	AATAAA	-20	NA	94440081	94430623	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_94433474_94433706_94433811_94434119_94434175_94434380_94434529_94434930_94434995_94435245_94435612_94438984_94439190_94439296_94439431_94439804
transcript_15470.known	chr11	-	3154	16	FSM	ENSMUSG00000076435.4	ENSMUST00000103164.4	3154	16	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_6	8.37615663654877	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGATTGGACTGTAACTC	7285	False	NA	-4	True	AATAAA	-19	NA	94492697	94447927	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_94449184_94449465_94449535_94449690_94449802_94450288_94450431_94452065_94452218_94453636_94453745_94460135_94460213_94460766_94460859_94461128_94461287_94461439_94461536_94462096_94462263_94462387_94462507_94463051_94463106_94463347_94463477_94463858_94464055_94492468
transcript_15475.known	chr11	+	2837	7	FSM	ENSMUSG00000020869.9	ENSMUST00000021239.7	2837	7	0	0	0	0	multi-exon	FALSE	canonical	3	2480	junction_6	120.266371026983	721	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTTCTCCTTTGTGCTG	NA	False	NA	27	True	ATTAAA	-18	NA	94520592	94536042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_94520936_94522906_94522967_94525370_94525530_94525737_94525843_94529356_94529430_94532045_94532220_94534119
transcript_15481.known	chr11	+	655	4	FSM	ENSMUSG00000024414.14	ENSMUST00000132813.8	655	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	381.100453365718	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGAGATGGCTCAGCAGT	NA	False	NA	NA	False	NA	NA	NA	94544601	94550744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_94544668_94547233_94547445_94547808_94547877_94550434
transcript_15485.known	chr11	+	439	4	FSM	ENSMUSG00000024414.14	ENSMUST00000125148.2	439	4	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	344.111416065592	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTAGTCTGCCCAAGGGT	NA	False	NA	NA	False	AAAACA	-19	NA	94544856	94550543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_94544987_94547312_94547445_94547808_94547877_94550434
transcript_15487.known	chr11	+	442	4	FSM	ENSMUSG00000024414.14	ENSMUST00000129498.8	442	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	387.191884671613	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAACAAGTGCCTGTATGCC	NA	False	NA	NA	False	GGGGCT	-6	NA	94544836	94550447	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_94544987_94547233_94547445_94547808_94547877_94550434
transcript_1549.known	chr1	-	668	6	FSM	ENSMUSG00000048234.14	ENSMUST00000195136.2	668	6	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_5	84.7230783199005	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCCTCACTGACAGCCTCA	4766	False	NA	NA	False	NA	NA	NA	39616437	39591549	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_39591597_39594558_39594752_39599773_39599857_39603128_39603198_39604162_39604414_39616412
transcript_15491.known	chr11	+	756	4	FSM	ENSMUSG00000024414.14	ENSMUST00000025278.8	756	4	0	0	0	0	multi-exon	FALSE	canonical	3	766	junction_3	47.8632310744781	7950	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGGAAAGGGACAGGACAG	NA	False	NA	19	True	NA	NA	NA	94544592	94550915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_94544668_94547312_94547445_94547808_94547877_94550434
transcript_15492.known	chr11	-	2444	9	FSM	ENSMUSG00000039055.5	ENSMUST00000039949.5	2444	9	0	0	0	0	multi-exon	TRUE	canonical	3	178	junction_8	32.4422563950167	256	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGAGCTTGGAGGAAGAC	4403	False	NA	-5	True	AATAAA	-18	NA	94544790	94535821	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_94536432_94536641_94536832_94538116_94538233_94538453_94538575_94538769_94538889_94538968_94539056_94540833_94540965_94541048_94541850_94544521
transcript_15494.known	chr11	-	3442	11	FSM	ENSMUSG00000020868.16	ENSMUST00000116349.9	3442	11	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_7	13.508885964431	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAATGTCCTTGTTTGCT	2205	False	NA	-6	True	AATATA	-16	NA	94568341	94554676	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_94555736_94557023_94557358_94557924_94558121_94558409_94558673_94558886_94559064_94559150_94559368_94559552_94559634_94560266_94560470_94560732_94560909_94561133_94561627_94568098
transcript_15498.nnic	chr11	-	759	4	NNC	ENSMUSG00000083227.2	novel	354	3	NA	NA	-4275	-179	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0.471404520791032	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGCTGGTTGTTTTGAAA	NA	False	NA	-1	True	AATAAA	-17	NA	94692878	94688053	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_94688355_94688551_94688636_94689121_94689145_94692527
transcript_1550.known	chr1	-	1832	3	FSM	ENSMUSG00000085894.2	ENSMUST00000146314.2	1832	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	2	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAGTCTCAAGATTATATA	NA	False	NA	1	True	AATAAA	-22	NA	39591083	39586650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_39586743_39588006_39588198_39589534
transcript_15502.nnic	chr11	-	751	3	NNC	ENSMUSG00000081478.2	novel	354	3	NA	NA	-4303	-180	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGCCGGTGGTTTTGAA	NA	False	NA	-4	True	AATAAA	-16	NA	94708477	94703624	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_94703927_94704122_94704207_94708112
transcript_15511.nic	chr11	+	1365	5	ISM	ENSMUSG00000001506.11	ENSMUST00000001547.8	5930	51	13758	1145	4614	-1145	3prime_fragment	FALSE	canonical	2	4	junction_1	14.6180539060437	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGGTCCTCTTGCTTGAA	NA	False	NA	NA	False	AAAAAG	-4	NA	94840807	94842723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_94841031_94841116_94841400_94841534_94841726_94841926_94842170_94842298
transcript_15512.nnic	chr11	-	774	3	NNC	ENSMUSG00000001508.16	novel	1724	11	NA	NA	6261	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCGTTTCTAGTGCTTCTT	NA	False	NA	NA	False	AATAAA	-23	NA	94855241	94853616	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_94853907_94854027_94854226_94854955
transcript_15516.known	chr11	-	2246	11	FSM	ENSMUSG00000038967.14	ENSMUST00000038431.8	2246	11	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	6.12290780593665	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGCCTGGCTTCCTTGC	6074	False	NA	-1	True	NA	NA	NA	94932180	94917083	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_94918149_94918690_94918805_94919304_94919413_94919523_94919623_94919747_94919825_94920479_94920558_94920742_94920833_94922661_94922847_94923290_94923363_94930174_94930317_94931964
transcript_1552.known	chr1	-	6091	4	FSM	ENSMUSG00000050967.6	ENSMUST00000053355.6	6091	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTTTTAGATTTCCCAGTC	NA	False	NA	NA	False	AATAAA	-20	NA	39690642	39657573	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_39662412_39664037_39664152_39686943_39687114_39689673
transcript_15523.known	chr11	+	1664	3	FSM	ENSMUSG00000086552.4	ENSMUST00000156477.4	1664	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATACTGGCTCTAAACCA	NA	False	NA	NA	False	NA	NA	NA	95035877	95049873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_95036101_95046176_95046332_95048587
transcript_15525.known	chr11	-	3414	15	FSM	ENSMUSG00000038909.17	ENSMUST00000092766.12	3414	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	245.342544793426	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	-5	True	AATAAA	-17	NA	95200428	95165084	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200362
transcript_15526.known	chr11	-	3560	15	FSM	ENSMUSG00000038909.17	ENSMUST00000107734.10	3560	15	0	0	0	0	multi-exon	FALSE	canonical	3	566	junction_10	130.748239149965	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	-5	True	AATAAA	-17	NA	95201072	95165084	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
transcript_15527.known	chr11	-	3470	14	FSM	ENSMUSG00000038909.17	ENSMUST00000107733.10	3470	14	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_9	177.090656421269	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	-5	True	AATAAA	-17	NA	95201072	95165084	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
transcript_15528.nic	chr11	-	3464	14	NIC	ENSMUSG00000038909.17	novel	3560	15	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	152	junction_1	222.401444165419	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	-5	True	AATAAA	-17	NA	95201083	95165084	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_95166714_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
transcript_15531.nic	chr11	-	3374	13	NIC	ENSMUSG00000038909.17	novel	3470	14	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	152	junction_1	258.98824244012	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	-5	True	AATAAA	-17	NA	95201083	95165084	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_95166714_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
transcript_15534.nnic	chr11	+	805	3	NNC	ENSMUSG00000085143.2	novel	630	3	NA	NA	-142	98	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.5	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTACGGAGCTGCTCAG	NA	False	NA	NA	False	AATAAA	-14	NA	95201112	95215420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_95201215_95210002_95210279_95214993
transcript_15535.known	chr11	+	630	3	FSM	ENSMUSG00000085143.2	ENSMUST00000122837.2	630	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	3.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCCCATAAGAAGAGACATT	NA	False	NA	NA	False	NA	NA	NA	95201254	95215322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_95201280_95210002_95210279_95214993
transcript_15537.known	chr11	+	1523	9	FSM	ENSMUSG00000020873.16	ENSMUST00000021243.16	1523	9	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_2	19.5923294939627	1184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCGAGACCCTGCTGCTGC	NA	False	NA	21	True	AATAAA	-22	NA	95275517	95282602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_95275940_95276626_95276731_95277311_95277443_95278036_95278068_95278595_95278754_95279905_95280033_95281103_95281211_95281350_95281505_95282313
transcript_15539.known	chr11	+	1299	9	FSM	ENSMUSG00000020873.16	ENSMUST00000131193.3	1299	9	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	72.2789734293453	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCGAGACCCTGCTGCTGC	NA	False	NA	21	True	AATAAA	-22	NA	95275716	95282602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_95275940_95276626_95276731_95277336_95277443_95278036_95278068_95278595_95278754_95279905_95280033_95281103_95281211_95281350_95281505_95282313
transcript_1555.known	chr1	+	4082	31	FSM	ENSMUSG00000026074.16	ENSMUST00000195636.6	4082	31	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	31.472668919062	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCGGTGCTAGGAGTGCT	NA	False	NA	28	True	AATAAA	-38	NA	39940383	40064129	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_39940447_39940668_39940735_40001337_40001395_40013086_40013213_40015866_40015978_40019719_40019811_40022298_40022430_40023042_40023098_40024341_40024421_40025784_40025961_40028129_40028203_40029248_40029460_40036180_40036343_40039047_40039135_40039783_40039910_40040589_40040752_40043966_40044074_40045830_40045983_40046592_40046691_40048847_40049024_40049716_40049838_40050809_40051002_40053265_40053384_40053686_40053858_40056269_40056414_40058703_40058839_40060243_40060345_40061864_40062015_40062519_40062680_40063469_40063610_40063788
transcript_15555.known	chr11	+	2881	11	FSM	ENSMUSG00000057522.16	ENSMUST00000107724.9	2881	11	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	65.0422170593838	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTCCTGTCATTGATGTA	NA	False	NA	NA	False	AATAAA	-20	NA	95304905	95384232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_95304958_95305157_95305231_95361347_95361492_95362048_95362171_95365056_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381254_95382522
transcript_15559.known	chr11	+	3063	10	FSM	ENSMUSG00000057522.16	ENSMUST00000107722.8	3063	10	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_3	21.694853460364	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTCCTGTCATTGATGTA	NA	False	NA	NA	False	AATAAA	-20	NA	95304923	95384232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_95305231_95361347_95361492_95362048_95362171_95365056_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381254_95382522
transcript_1556.known	chr1	+	1419	9	FSM	ENSMUSG00000026073.14	ENSMUST00000027243.13	1419	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.04633819296811	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGACCCATGTGGTTTCTT	NA	False	NA	NA	False	AATAAA	-20	NA	40123857	40164391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_40123980_40141548_40141698_40144423_40144683_40151114_40151296_40154183_40154359_40157114_40157178_40160068_40160205_40162281_40162425_40164200
transcript_15568.known	chr11	-	2099	2	FSM	ENSMUSG00000046719.8	ENSMUST00000058866.8	2099	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTATTCTAAGTAATCCAG	NA	False	NA	1	True	AATAAA	-20	NA	95405396	95400670	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_95402359_95404985
transcript_15569.known	chr11	-	3446	6	FSM	ENSMUSG00000000120.7	ENSMUST00000000122.7	3446	6	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_2	5.88557558782486	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAACGATGCCAAGAGAAT	NA	False	NA	NA	False	ATTAAA	-15	NA	95478561	95459643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_95461922_95462645_95462807_95465016_95465270_95468799_95469160_95471778_95471921_95478309
transcript_1558.known	chr1	-	3160	6	FSM	ENSMUSG00000041945.13	ENSMUST00000039672.6	3160	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	1.46969384566991	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTGTGTGTGTGTCGTGT	NA	False	NA	NA	False	ATTAAA	-14	NA	40829823	40811197	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_40813707_40820540_40820751_40823536_40823667_40825326_40825371_40826689_40826778_40829644
transcript_15580.known	chr11	+	724	7	FSM	ENSMUSG00000038845.12	ENSMUST00000036374.6	724	7	0	0	0	0	multi-exon	FALSE	canonical	3	311	junction_1	2134.13703610825	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCAGCCATCATCTCTGC	NA	False	NA	NA	False	NA	NA	NA	95557889	95570534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_95557966_95558862_95558978_95562212_95562375_95565967_95566111_95566395_95566513_95568876_95568973_95570519
transcript_15583.known	chr11	+	1799	7	FSM	ENSMUSG00000038845.12	ENSMUST00000125172.8	1799	7	0	0	0	0	multi-exon	FALSE	canonical	3	4384	junction_3	774.980806213935	13743	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGGGTGTGTTTTCAATT	NA	False	NA	11	True	AATAAA	-25	NA	95557782	95571599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_95557869_95558862_95558978_95562212_95562375_95565967_95566111_95566395_95566513_95568876_95568973_95570519
transcript_15585.known	chr11	-	537	2	FSM	ENSMUSG00000086191.2	ENSMUST00000155531.2	537	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTGTTGTTCAGATGTT	NA	False	NA	NA	False	TATAAA	-28	NA	95603580	95590931	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_95591342_95603453
transcript_15586.known	chr11	-	4006	8	FSM	ENSMUSG00000018381.16	ENSMUST00000059026.10	4006	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	1.51185789203691	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCAAGGCCGGGTGGGCA	NA	False	NA	NA	False	AATAAA	-35	NA	95733235	95720899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_95723703_95724034_95724161_95724465_95724627_95724828_95724925_95725131_95725218_95726603_95726781_95727895_95728064_95732846
transcript_15589.nnic	chr11	+	614	4	NNC	ENSMUSG00000038811.14	novel	629	3	NA	NA	-690	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	7.03957069398096	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCGGAGTGGATTCTCAAT	NA	False	NA	NA	False	AATAAA	-22	NA	95732430	95736560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_95732619_95734637_95734722_95735876_95735967_95736308
transcript_1559.known	chr1	-	499	3	FSM	ENSMUSG00000060424.15	ENSMUST00000188153.7	499	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGCCTACTGTTTTCTG	NA	False	NA	-1	True	AATAAA	-16	NA	42733985	42687359	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_42687617_42706000_42706164_42733906
transcript_15591.nnic	chr11	+	505	4	NNC	ENSMUSG00000038811.14	novel	1587	3	NA	NA	-72	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	6.84754619472471	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCGGAGTGGATTCTCAAT	NA	False	NA	NA	False	AATAAA	-22	NA	95733048	95736560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_95733109_95734637_95734722_95735857_95735967_95736308
transcript_15592.nnic	chr11	+	486	4	NNC	ENSMUSG00000038811.14	novel	629	3	NA	NA	-72	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	6.34209919681348	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCGGAGTGGATTCTCAAT	NA	False	NA	NA	False	AATAAA	-22	NA	95733048	95736560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_95733109_95734637_95734722_95735876_95735967_95736308
transcript_15594.known	chr11	+	563	4	FSM	ENSMUSG00000038811.14	ENSMUST00000107711.8	563	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	5.71547606649408	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCGGAGTGGATTCTCAAT	NA	False	NA	NA	False	AATAAA	-22	NA	95733134	95736560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_95733253_95734637_95734722_95735857_95735967_95736308
transcript_15595.known	chr11	+	558	4	FSM	ENSMUSG00000038811.14	ENSMUST00000107714.9	558	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	4.54606056566195	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCGGAGTGGATTCTCAAT	NA	False	NA	NA	False	AATAAA	-22	NA	95733120	95736560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_95733253_95734637_95734722_95735876_95735967_95736308
transcript_15598.known	chr11	+	573	4	FSM	ENSMUSG00000038811.14	ENSMUST00000100532.10	573	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	7.71722460186015	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCGGAGTGGATTCTCAAT	NA	False	NA	NA	False	AATAAA	-22	NA	95733493	95736560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_95733622_95734637_95734722_95735857_95735967_95736308
transcript_15599.nic	chr11	+	560	4	NIC	ENSMUSG00000038811.14	novel	573	4	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	7.40870359029762	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCGGAGTGGATTCTCAAT	NA	False	NA	NA	False	AATAAA	-22	NA	95733487	95736560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_95733622_95734637_95734722_95735876_95735967_95736308
transcript_15600.known	chr11	+	590	3	FSM	ENSMUSG00000050860.7	ENSMUST00000150134.2	590	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	1.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTACTACAATGAGTACATG	2197	False	NA	NA	False	NA	NA	NA	95715324	95721527	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_95715536_95719491_95719602_95721258
transcript_15601.known	chr11	+	629	3	FSM	ENSMUSG00000038811.14	ENSMUST00000107708.2	629	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	5.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCGGAGTGGATTCTCAAT	NA	False	NA	NA	False	AATAAA	-22	NA	95734434	95736560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_95734722_95735876_95735967_95736308
transcript_15603.known	chr11	+	1269	2	FSM	ENSMUSG00000086015.2	ENSMUST00000146868.2	1269	2	0	0	0	0	multi-exon	TRUE	canonical	3	111	junction_1	0	471	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATATTATAAATGTATATT	1026	False	NA	NA	False	NA	NA	NA	95749690	95751870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_95749909_95750819
transcript_15611.known	chr11	-	1722	11	FSM	ENSMUSG00000013418.9	ENSMUST00000038343.7	1722	11	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	6.67907179179862	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGGAGCTAGGGTAGGAC	2890	False	NA	NA	False	NA	NA	NA	95805717	95756768	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_95757103_95757575_95757796_95759175_95759317_95760059_95760248_95764687_95764775_95766923_95767105_95774768_95774807_95779632_95779740_95781798_95781937_95782583_95782800_95805645
transcript_15616.nnic	chr11	-	1017	8	NNC	ENSMUSG00000013418.9	novel	1722	11	NA	NA	0	1257	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	11.5864100548524	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAAGAAAAGATTGTG	2890	False	NA	NA	False	NA	NA	NA	95805717	95755511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_95755690_95764687_95764775_95766923_95767105_95774768_95774807_95779632_95779740_95781798_95781937_95782583_95782800_95805645
transcript_1562.known	chr1	+	1418	11	FSM	ENSMUSG00000060679.15	ENSMUST00000057208.13	1418	11	0	0	0	0	multi-exon	FALSE	canonical	3	624	junction_3	42.3685024517034	3378	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCGCCCTTTTTTTTTAAA	NA	False	NA	14	True	AATAAA	-16	NA	42890392	42944842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_42890587_42901628_42901809_42918914_42918978_42919055_42919087_42926866_42926947_42934509_42934578_42935252_42935329_42937599_42937769_42938600_42938710_42942454_42942625_42944564
transcript_15622.nic	chr11	-	931	3	ISM	ENSMUSG00000013418.9	ENSMUST00000038343.7	1722	11	-97	24622	-97	-24622	5prime_fragment	FALSE	canonical	3	31	junction_1	3	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTTCAGTAAAACTGACAG	2793	False	NA	NA	False	NA	NA	NA	95805814	95781390	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_95781937_95782583_95782800_95805645
transcript_15626.known	chr11	-	8378	15	FSM	ENSMUSG00000013415.10	ENSMUST00000013559.3	8378	15	0	0	0	0	multi-exon	FALSE	canonical	3	452	junction_5	71.7782867514933	774	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGAGTGTGTCTGTGCTTC	NA	False	NA	-5	True	AATAAA	-19	NA	95896766	95847988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
transcript_15636.known	chr11	-	823	1	FSM	ENSMUSG00000103376.2	ENSMUST00000194862.2	823	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTTTATTCCTAAGAACT	NA	False	NA	NA	False	AATAAA	-12	NA	95897981	95897158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_95897200_95898000
transcript_15637.known	chr11	+	652	6	FSM	ENSMUSG00000014351.13	ENSMUST00000103157.10	652	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.56124969497314	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGGTGTCCATGGTGAAA	NA	False	NA	NA	False	AATAAA	-19	NA	95915370	95921657	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_95915451_95916179_95916288_95917449_95917597_95919511_95919602_95920313_95920416_95921532
transcript_15642.known	chr11	+	1004	8	FSM	ENSMUSG00000006058.11	ENSMUST00000006217.10	1004	8	0	0	0	0	multi-exon	FALSE	canonical	3	665	junction_5	23.859281341282	3715	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTTCCCCCAGTAT	3197	False	NA	21	True	AATAAA	-43	NA	95925710	95938256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_95925894_95926144_95926196_95930104_95930244_95932450_95932556_95934229_95934303_95935986_95936129_95937105_95937181_95938020
transcript_15647.known	chr11	+	849	7	FSM	ENSMUSG00000006058.11	ENSMUST00000107700.4	849	7	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_6	239.545866635645	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTTCCCCCAGTAT	3277	False	NA	21	True	AATAAA	-43	NA	95925790	95938256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_95925894_95926144_95926196_95930104_95930244_95932450_95932556_95934229_95934303_95935986_95936129_95938020
transcript_1565.known	chr1	+	3458	4	FSM	ENSMUSG00000010290.8	ENSMUST00000010434.8	3458	4	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_3	24.6080384337223	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAGCAGGCCTGTCATTT	NA	False	NA	NA	False	AATAAA	-15	NA	43137869	43155107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_43138023_43139874_43140042_43150157_43150534_43152345
transcript_15654.known	chr11	+	484	4	FSM	ENSMUSG00000006058.11	ENSMUST00000150946.8	484	4	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_3	334.70617296701	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	3263	False	NA	NA	False	NA	NA	NA	95925776	95930704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_95925894_95926144_95926196_95930104_95930244_95930527
transcript_15658.known	chr11	-	3997	7	FSM	ENSMUSG00000014349.8	ENSMUST00000100528.5	3997	7	0	0	0	0	multi-exon	FALSE	canonical	3	1035	junction_3	37.418429802557	302	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTTGGAATGAACTTTT	5467	False	NA	NA	False	AATAAA	-19	NA	95956214	95938257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_95941241_95942559_95942651_95946663_95946777_95949141_95949254_95951762_95951951_95953820_95953894_95955777
transcript_1566.known	chr1	-	1563	6	FSM	ENSMUSG00000008136.15	ENSMUST00000008280.14	1563	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.4	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTGTGTGGACTAATGAT	NA	False	NA	-2	True	AATAAA	-30	NA	43203121	43162233	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_43162826_43167403_43167591_43170811_43170982_43180857_43181033_43192235_43192415_43202861
transcript_1567.known	chr1	+	483	1	FSM	ENSMUSG00000094497.2	ENSMUST00000178557.2	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	475	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGACTCCTGCCAGTGTG	NA	False	NA	NA	False	NA	NA	NA	43228315	43228798	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_43228300_43228800
transcript_1568.known	chr1	+	2772	5	FSM	ENSMUSG00000066877.12	ENSMUST00000086421.9	2772	5	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_4	15.4757875405422	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGCTGTGTGTTTGTGTT	NA	False	NA	11	True	AATAAA	-15	NA	43484910	43609675	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_43485188_43548780_43548944_43572711_43572954_43593020_43593743_43608307
transcript_1569.known	chr1	+	902	4	FSM	ENSMUSG00000026051.9	ENSMUST00000027217.9	902	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	0.816496580927726	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATCAGAATTCACTTGGGA	NA	False	NA	NA	False	AATAAA	-22	NA	43769761	43781738	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_43770124_43776359_43776408_43777719_43777878_43781404
transcript_15694.known	chr11	-	4715	5	FSM	ENSMUSG00000006057.16	ENSMUST00000090541.12	4715	5	0	0	0	0	multi-exon	FALSE	canonical	3	2808	junction_4	3276.79938163751	27433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGGTCCAATTTCTGAT	3479	False	NA	NA	False	TTTAAA	-2	NA	95966496	95959677	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_95964045_95964348_95964528_95964787_95964866_95965812_95965860_95966452
transcript_15695.known	chr11	-	596	5	FSM	ENSMUSG00000006057.16	ENSMUST00000107684.2	596	5	0	0	0	0	multi-exon	FALSE	canonical	3	5157	junction_4	2293.78611688187	53091	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACCATGTGCCTGTGCCT	3530	False	NA	-9	True	NA	NA	NA	95966445	95963815	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_95964045_95964348_95964528_95964787_95964866_95965812_95965860_95966382
transcript_15696.known	chr11	-	691	5	FSM	ENSMUSG00000006057.16	ENSMUST00000107686.8	691	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_4	4410.8346149	12016	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCATGTGCCTGTGCCTGTC	3568	False	NA	-6	True	NA	NA	NA	95966407	95963812	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_95964045_95964348_95964528_95964787_95964866_95965812_95965860_95966252
transcript_15698.known	chr11	-	1621	6	FSM	ENSMUSG00000006056.14	ENSMUST00000068686.13	1621	6	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_5	66.2751838926155	1401	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTATGTGAGTACACTATC	4211	False	NA	-2	True	NA	NA	NA	96002790	95990151	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_95991229_95993473_95993579_95994042_95994177_95994283_95994387_95998256_95998431_96002762
transcript_157.known	SIRV2	-	2051	11	FSM	SIRV2A	SIRV201	2051	11	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_6	997.649657946115	1557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCCCAACGTGGCATGCG	NA	False	NA	NA	False	NA	NA	NA	5907	1000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV2_-_1662_1741_1854_1973_2065_2674_2803_2881_3011_3105_3375_3665_3826_3966_4095_4338_4480_4687_4801_5788
transcript_15702.nnic	chr11	-	355	2	Antisense	novelGene_ENSMUSG00000038756.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	6	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGCATGTCATCTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	96031991	96027182	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr11_-_96027344_96031797
transcript_15704.known	chr11	+	2206	2	FSM	ENSMUSG00000049604.4	ENSMUST00000062709.4	2206	2	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTCCCTCTTCTTCCTCA	3944	False	NA	NA	False	AATAAA	-20	NA	96085141	96088273	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_96085873_96086798
transcript_15706.known	chr11	+	557	1	FSM	ENSMUSG00000083337.2	ENSMUST00000119837.2	557	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1351	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGGATCTTAACTGTTAA	5803	False	NA	NA	False	NA	NA	NA	96139458	96140015	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_96139500_96140000
transcript_1571.known	chr1	-	4620	15	FSM	ENSMUSG00000057363.13	ENSMUST00000126008.8	4620	15	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_12	17.2527726254451	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGGTAATGGTGTCACTT	NA	False	NA	NA	False	NA	NA	NA	43866960	43786125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_43789523_43792876_43792981_43794858_43794917_43796131_43796193_43799680_43799725_43804049_43804170_43810840_43810963_43813976_43814037_43819224_43819330_43829623_43829805_43836404_43836466_43844512_43844557_43844785_43844835_43846509_43846538_43866774
transcript_15710.nnic	chr11	+	1971	5	NNC	ENSMUSG00000078706.5	novel	1172	3	NA	NA	-581	4374	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_4	6.48074069840786	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCACATGTCCTTTTGGGC	7694	False	NA	4	True	AATAAA	-17	NA	96141349	96160068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_96142640_96152437_96152590_96154999_96155212_96155549_96155672_96159873
transcript_15716.nnic	chr11	+	1335	4	NNC	ENSMUSG00000078706.5	novel	1172	3	NA	NA	-97	4374	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	2.82842712474619	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCACATGTCCTTTTGGGC	8178	False	NA	4	True	AATAAA	-17	NA	96141833	96160068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_96142640_96154999_96155212_96155549_96155672_96159873
transcript_15718.known	chr11	+	3257	2	FSM	ENSMUSG00000078706.5	ENSMUST00000150490.3	3257	2	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCATCAATTTTTTTTTC	8814	False	NA	NA	False	NA	NA	NA	96142469	96155524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_96142640_96152437
transcript_15720.known	chr11	+	2574	2	FSM	ENSMUSG00000020875.10	ENSMUST00000000010.9	2574	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACCTCTCCTGCGTTTTA	NA	False	NA	NA	False	AATATA	-18	NA	96162282	96167421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_96162885_96165449
transcript_15721.known	chr11	+	1291	2	FSM	ENSMUSG00000038721.9	ENSMUST00000049352.8	1291	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGACACGCTGTGTTTTCT	84	False	NA	NA	False	AATAAA	-17	NA	96177448	96180988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_96177954_96180202
transcript_15724.known	chr11	+	555	1	FSM	ENSMUSG00000075587.6	ENSMUST00000117614.2	555	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTCAGCATAAAATAAAGGC	194	False	NA	NA	False	AAGAAA	-34	NA	96282937	96283492	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_96282900_96283500
transcript_15727.known	chr11	-	2551	9	FSM	ENSMUSG00000020876.15	ENSMUST00000021246.9	2551	9	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_6	14.0529133990073	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGCAAAGCCCTGGCTGC	NA	False	NA	-7	True	AATAAA	-15	NA	96668357	96658380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_96660149_96661464_96661678_96661854_96661951_96663607_96663709_96663961_96664049_96665266_96665322_96666199_96666260_96667793_96667888_96668280
transcript_15729.known	chr11	-	2197	8	FSM	ENSMUSG00000020876.15	ENSMUST00000107661.10	2197	8	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_6	17.839419776416	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACTGTTGTTGCAATTTG	NA	False	NA	-16	True	AATAAA	-13	NA	96668385	96658702	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_96660149_96661464_96661678_96661854_96661951_96663607_96663709_96663961_96664049_96665266_96665322_96667793_96667888_96668280
transcript_15748.known	chr11	+	1824	4	FSM	ENSMUSG00000018666.14	ENSMUST00000018810.10	1824	4	0	0	0	0	multi-exon	FALSE	canonical	3	611	junction_3	65.5455736279897	632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATCTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96679952	96694795	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553
transcript_15749.known	chr11	+	1251	6	FSM	ENSMUSG00000018666.14	ENSMUST00000093943.10	1251	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_5	266.87570140423	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATCTGTCTTTTGGTGGGG	NA	False	NA	NA	False	ATTAAA	-15	NA	96679984	96699466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96697441_96697591_96699009
transcript_15750.known	chr11	+	2377	5	FSM	ENSMUSG00000018666.14	ENSMUST00000134585.8	2377	5	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_4	281.892155797213	1697	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGATTTCTGTCTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	96679962	96698975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693825_96697441
transcript_15751.known	chr11	+	912	5	FSM	ENSMUSG00000018666.14	ENSMUST00000079702.4	912	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	308.662032002642	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTTTTATGAAGTAGCTTA	NA	False	NA	NA	False	AATATA	-14	NA	96680074	96699366	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96699009
transcript_15752.known	chr11	-	4596	5	FSM	ENSMUSG00000038615.18	ENSMUST00000167149.8	4596	5	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_4	530.254891538023	1093	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTCTCCCCCCTCTCCCT	NA	False	NA	-6	True	AATAAA	-33	NA	96720328	96708239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96718023_96719050_96720236
transcript_15753.known	chr11	-	4654	5	FSM	ENSMUSG00000038615.18	ENSMUST00000081775.12	4654	5	0	0	0	0	multi-exon	FALSE	canonical	3	711	junction_4	320.112870719064	1102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTCTCCCCCCTCTCCCT	NA	False	NA	-6	True	AATAAA	-33	NA	96720794	96708239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96718023_96719050_96720644
transcript_15757.known	chr11	-	486	4	FSM	ENSMUSG00000038615.18	ENSMUST00000142065.2	486	4	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_3	463.171914327955	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGGAGACCCTCTTAGCA	NA	False	NA	NA	False	AGTAAA	-34	NA	96714834	96711295	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96714770
transcript_15760.known	chr11	-	851	4	FSM	ENSMUSG00000038615.18	ENSMUST00000126949.8	851	4	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_3	612.843826399153	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCAGCTCGAAGAGGAG	NA	False	NA	NA	False	NA	NA	NA	96714953	96710918	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96714901
transcript_15762.nic	chr11	-	293	2	ISM	ENSMUSG00000038615.18	ENSMUST00000081775.12	4654	5	-21	10688	-21	-369	5prime_fragment	FALSE	canonical	3	711	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGGAAAGAAAGACTCCAT	NA	False	NA	NA	False	AATAAA	-33	NA	96720815	96718927	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_96719050_96720644
transcript_15763.known	chr11	-	582	2	FSM	ENSMUSG00000038615.18	ENSMUST00000135836.2	582	2	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATAAATATTCTGGTCCTT	NA	False	NA	NA	False	TTTAAA	-10	NA	96720327	96718558	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_96719050_96720236
transcript_15767.known	chr11	+	930	9	FSM	ENSMUSG00000018672.16	ENSMUST00000018816.14	930	9	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_8	11.8420595759353	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTCCTTTCTTGACTTTG	775	False	NA	11	True	AATAAA	-22	NA	96740701	96752029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_96740823_96741498_96741568_96744260_96744343_96744883_96744976_96745409_96745466_96746081_96746160_96747497_96747550_96748378_96748418_96751688
transcript_15775.known	chr11	+	1045	2	FSM	ENSMUSG00000018672.16	ENSMUST00000155696.2	1045	2	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAGAAAAAGAAAA	769	False	NA	NA	False	NA	NA	NA	96740695	96742416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_96740823_96741498
transcript_15779.known	chr11	-	3055	7	FSM	ENSMUSG00000018678.14	ENSMUST00000107624.8	3055	7	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_6	154.880599172395	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAGTCTGCGTTTGGCAGT	NA	False	NA	-17	True	AATAAA	-16	NA	96868537	96844166	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_96845397_96846600_96846795_96846930_96847106_96848249_96848563_96851863_96852836_96854190_96854271_96868446
transcript_15782.known	chr11	+	1216	6	FSM	ENSMUSG00000078700.11	ENSMUST00000107628.8	1216	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	1.72046505340853	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAAAAAAAAGGGAAGG	4811	False	NA	NA	False	NA	NA	NA	96835014	96850888	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_96835041_96835670_96835920_96843406_96843555_96849678_96849851_96850165_96850278_96850379
transcript_15784.known	chr11	+	2801	6	FSM	ENSMUSG00000078700.11	ENSMUST00000135825.9	2801	6	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_3	5.35163526410386	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAAAACAAACAA	4787	False	NA	NA	False	NA	NA	NA	96834990	96855886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_96835041_96835670_96835920_96843406_96843555_96850379_96851108_96851686_96851823_96854396
transcript_15788.known	chr11	+	3545	3	FSM	ENSMUSG00000047040.10	ENSMUST00000107636.4	3545	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACACGGCTGACAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	96820149	96828656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_96820336_96822336_96822380_96825340
transcript_1579.nnic	chr1	-	757	7	NNC	ENSMUSG00000057363.13	novel	449	7	NA	NA	9	2227	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	70.068418944153	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTAGTATAATAGTCTTAA	NA	False	NA	NA	False	CATAAA	-20	NA	43866951	43827563	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_43827781_43829623_43829805_43836404_43836466_43844512_43844557_43844785_43844835_43846509_43846538_43866774
transcript_15793.nic	chr11	-	1449	3	ISM	ENSMUSG00000018678.14	ENSMUST00000107624.8	3055	7	-5	7396	-5	-6518	5prime_fragment	FALSE	canonical	3	58	junction_2	224.5	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATATAACAGCAAGAATGAG	NA	False	NA	-11	True	AATAAA	-21	NA	96868542	96851562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_96852836_96854190_96854271_96868446
transcript_15794.known	chr11	+	1342	2	FSM	ENSMUSG00000047040.10	ENSMUST00000054311.6	1342	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACGGTCTTATTTATACAC	NA	False	NA	NA	False	AATAAA	-15	NA	96820127	96826474	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_96820336_96825340
transcript_15795.known	chr11	+	1242	2	FSM	ENSMUSG00000047040.10	ENSMUST00000062172.6	1242	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACCACGGTCTTATTTA	NA	False	NA	NA	False	AATAAA	-10	NA	96820219	96826469	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_96820336_96825343
transcript_15797.known	chr11	-	2250	14	FSM	ENSMUSG00000018669.15	ENSMUST00000103152.11	2250	14	0	0	0	0	multi-exon	FALSE	canonical	3	831	junction_13	105.723262738262	659	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGTCACCTTTACTGGCT	NA	False	NA	-13	True	GATAAA	-16	NA	96807322	96798251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802523_96802698_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976_96807023_96807209
transcript_15798.known	chr11	-	836	2	FSM	ENSMUSG00000018669.15	ENSMUST00000154289.2	836	2	0	0	0	0	multi-exon	FALSE	canonical	3	1146	junction_1	0	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGTGGCTGGCAGTCACT	1253	False	NA	-41	True	AATAAA	-15	NA	96799584	96798641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_96798949_96799055
transcript_15799.known	chr11	-	768	6	FSM	ENSMUSG00000018669.15	ENSMUST00000127048.8	768	6	0	0	0	0	multi-exon	FALSE	canonical	3	1008	junction_1	85.042577571473	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGCAGGGGCTCAGTCCC	NA	False	NA	NA	False	NA	NA	NA	96807218	96802770	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976
transcript_1580.known	chr1	+	4649	30	FSM	ENSMUSG00000041763.15	ENSMUST00000087933.10	4649	30	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_23	82.0288369004111	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTATAAATAAAAGTAAATA	3304	False	NA	-21	True	NA	NA	NA	43973166	44042131	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_43973414_43979269_43979399_43988471_43988568_43990266_43990372_43992416_43992542_43993736_43993901_43995630_43995786_43996595_43996673_43999243_43999372_44000027_44000128_44008041_44008191_44009560_44009677_44010723_44010893_44011689_44011848_44012603_44012681_44014575_44014683_44016366_44016522_44017572_44017690_44017894_44017996_44019467_44019565_44020889_44021028_44022231_44022477_44022673_44022753_44024575_44024615_44029670_44029823_44030422_44030520_44031423_44031555_44038787_44038996_44040478_44040599_44041263
transcript_15800.known	chr11	-	1994	7	FSM	ENSMUSG00000018659.13	ENSMUST00000018803.12	1994	7	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_4	10.434983894999	582	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTTTAACTTGATTCCAT	NA	False	NA	-2	True	AATAAA	-25	NA	96834812	96828650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_96829910_96830080_96830152_96830473_96830603_96830841_96830896_96831681_96831782_96833235_96833361_96834556
transcript_15805.known	chr11	+	1530	8	FSM	ENSMUSG00000020877.12	ENSMUST00000021249.11	1530	8	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_5	16.9597362320652	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGGATCTCAAGTCTATT	NA	False	NA	17	True	AATAAA	-23	NA	96920763	96924784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_96920882_96921241_96921416_96921705_96921888_96922914_96923115_96923580_96923797_96923889_96924056_96924144_96924326_96924491
transcript_15813.nnic	chr11	+	1584	8	NNC	ENSMUSG00000020877.12	novel	1530	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	41.1958983494271	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGGATCTCAAGTCTATT	NA	False	NA	17	True	AATAAA	-23	NA	96920826	96924784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_96920999_96921241_96921416_96921705_96921888_96922914_96923115_96923580_96923797_96923889_96924056_96924144_96924326_96924491
transcript_15816.known	chr11	+	1552	7	FSM	ENSMUSG00000020877.12	ENSMUST00000126874.2	1552	7	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	9.66810334151545	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAGTGAACTGGATCTCA	NA	False	NA	9	True	AATAAA	-15	NA	96920826	96924776	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_96920882_96921241_96921416_96921705_96921888_96922914_96923115_96923580_96924056_96924144_96924326_96924491
transcript_1582.known	chr1	+	4631	29	FSM	ENSMUSG00000041763.15	ENSMUST00000188313.7	4631	29	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_23	40.426725727682	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACAATTGGTCTTAATTT	3312	False	NA	8	True	AATAAA	-18	NA	43973174	44042160	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_43973414_43979269_43979399_43988471_43988568_43990266_43990372_43992416_43992542_43993736_43993901_43995630_43995786_43996595_43996673_43999243_43999372_44000027_44000128_44008041_44008191_44009560_44009677_44010723_44010893_44011689_44011848_44012603_44012681_44014575_44014683_44016366_44016522_44017572_44017690_44017894_44017996_44019467_44019565_44020889_44021028_44022231_44022477_44022673_44022753_44029670_44029823_44030422_44030520_44031423_44031555_44038787_44038996_44040478_44040599_44041263
transcript_15822.known	chr11	+	605	3	FSM	ENSMUSG00000020877.12	ENSMUST00000133054.8	605	3	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	14	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGCTTTAATTTTTTTT	NA	False	NA	NA	False	GATAAA	-17	NA	96920777	96922032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_96920882_96921241_96921416_96921705
transcript_15823.known	chr11	-	1336	8	FSM	ENSMUSG00000020878.7	ENSMUST00000021251.7	1336	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.24539969815448	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAATGCTTTTCATGTTA	4148	False	NA	NA	False	AATAAA	-13	NA	96932233	96925427	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_96925851_96926284_96926431_96926697_96926768_96926921_96927032_96927295_96927343_96929597_96929707_96931692_96931799_96931908
transcript_15824.known	chr11	+	3771	23	FSM	ENSMUSG00000038534.20	ENSMUST00000090020.13	3771	23	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	33.8534762061397	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGTGACCACTCATTGAA	9941	False	NA	22	True	AATAAA	-18	NA	96941453	96959730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_96941780_96943050_96943203_96943311_96943438_96943595_96943650_96944940_96945055_96945375_96945472_96945584_96945703_96946352_96946457_96946680_96946774_96946856_96946990_96947078_96947174_96947353_96947450_96949285_96949424_96949924_96950019_96950868_96951117_96951276_96951415_96956414_96956479_96956606_96956686_96957758_96957904_96958030_96958176_96958259_96958387_96958490_96958614_96958767
transcript_15837.known	chr11	+	920	5	FSM	ENSMUSG00000038534.20	ENSMUST00000143360.2	920	5	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	29.0978951128772	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTCTTGTGACCCCAAATC	NA	False	NA	NA	False	NA	NA	NA	96957708	96959097	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_96957904_96958030_96958176_96958259_96958387_96958490_96958614_96958767
transcript_15840.nnic	chr11	+	1324	4	NIC	ENSMUSG00000001445.11	novel	1708	5	NA	NA	-8	-222	combination_of_known_splicesites	FALSE	canonical	3	40	junction_1	229.382262222305	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTTTAAGAATTATTTT	865	False	NA	20	True	AATAAA	-21	NA	96932377	96939817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_96932479_96937855_96938021_96938238_96938384_96938904
transcript_15841.nnic	chr11	+	1546	4	NIC	ENSMUSG00000001445.11	novel	1708	5	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	3	40	junction_1	229.382262222305	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTATGTTTATATCTGTA	865	False	NA	10	True	NA	NA	NA	96932377	96940039	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_96932479_96937855_96938021_96938238_96938384_96938904
transcript_15845.known	chr11	+	1708	5	FSM	ENSMUSG00000001445.11	ENSMUST00000001485.10	1708	5	0	0	0	0	multi-exon	FALSE	canonical	3	440	junction_1	35.8643276808586	1057	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTATGTTTATATCTGTA	873	False	NA	10	True	NA	NA	NA	96932385	96940039	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_96932479_96935353_96935524_96937855_96938021_96938238_96938384_96938904
transcript_15846.known	chr11	-	2488	6	FSM	ENSMUSG00000001444.3	ENSMUST00000001484.3	2488	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	1.26491106406735	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACGCCCTCCTTCTGTGGCT	NA	False	NA	NA	False	AATAAA	-16	NA	97006157	96988896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_96990205_96990595_96990658_96990752_96990912_96992304_96992427_96992769_96992925_97005475
transcript_15847.known	chr11	-	5894	22	FSM	ENSMUSG00000001440.6	ENSMUST00000001479.5	5894	22	0	0	0	0	multi-exon	TRUE	canonical	3	682	junction_21	133.681077140662	2040	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTGCTGCTTCGTTCTTT	NA	False	NA	-4	True	AATAAA	-25	NA	97078707	97050539	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_97053508_97054178_97054341_97054739_97054855_97055550_97055657_97055778_97055923_97056201_97056310_97056872_97056956_97058375_97058521_97059690_97059763_97059973_97060122_97060727_97060859_97062347_97062540_97063878_97064104_97066574_97066677_97068071_97068183_97069095_97069186_97069693_97069754_97071269_97071423_97072450_97072652_97075752_97075936_97078214_97078274_97078371
transcript_15848.known	chr11	-	4215	23	FSM	ENSMUSG00000001441.14	ENSMUST00000001480.14	4215	23	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_18	36.1553409289133	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTGTTGGCCTGGTTCTT	NA	False	NA	-2	True	AATAAA	-13	NA	97171464	97096669	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_97098095_97103105_97103154_97103857_97104014_97104596_97104705_97108616_97108674_97109333_97109477_97113776_97113997_97115484_97115620_97117554_97117695_97120655_97120720_97122714_97122825_97125880_97125942_97126890_97126996_97128919_97129085_97131754_97131870_97132629_97132664_97132776_97132874_97133428_97133630_97135253_97135362_97139027_97139150_97149099_97149178_97158420_97158506_97171026
transcript_15859.known	chr11	+	2431	8	FSM	ENSMUSG00000018882.13	ENSMUST00000019026.10	2431	8	0	0	0	0	multi-exon	FALSE	canonical	3	2561	junction_3	172.211545276531	2131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACCCAGCTTAAAATTACT	NA	False	NA	14	True	NA	NA	NA	97206541	97220746	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_97206766_97207572_97207751_97212268_97212387_97214676_97214776_97216534_97216584_97217607_97217758_97218911_97219086_97219307
transcript_1586.known	chr1	+	1389	7	FSM	ENSMUSG00000041763.15	ENSMUST00000186028.2	1389	7	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_5	33.8070505466932	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAAAAAAAAAAAAAAAAGA	3312	False	NA	NA	False	AAAAAG	-23	NA	43973174	43996161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_43973414_43979269_43979399_43988471_43988568_43990266_43990372_43992416_43992542_43993736_43993901_43995630
transcript_15860.known	chr11	+	493	3	FSM	ENSMUSG00000018882.13	ENSMUST00000132168.2	493	3	0	0	0	0	multi-exon	FALSE	canonical	3	2928	junction_1	123	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTATATCATATTGATTTT	NA	False	NA	NA	False	NA	NA	NA	97206733	97212551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_97206766_97207572_97207751_97212268
transcript_15870.known	chr11	+	612	4	FSM	ENSMUSG00000085860.2	ENSMUST00000131687.2	612	4	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_3	12.3917535302941	748	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	NA	False	NA	29	True	AATATA	-14	NA	97489336	97513719	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_97489494_97505749_97505855_97509262_97509326_97513432
transcript_15875.known	chr11	-	1971	4	FSM	ENSMUSG00000085586.2	ENSMUST00000134427.2	1971	4	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	2.82842712474619	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATATTATGCATATTATT	NA	False	NA	NA	False	NA	NA	NA	97551193	97535009	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_97535384_97535684_97536944_97537179_97537348_97551023
transcript_1588.nnic	chr1	-	478	2	Antisense	novelGene_ENSMUSG00000041763.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	15	junction_1	0	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGGCTATTCTAGTTATAA	NA	False	NA	NA	False	NA	NA	NA	43973080	43971378	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr1_-_43971575_43972798
transcript_15880.known	chr11	+	546	4	FSM	ENSMUSG00000078695.9	ENSMUST00000107584.8	546	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	467.239410438232	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGTTTCTGTGGTCAC	2325	False	NA	-1	True	AATAAA	-21	NA	97576651	97579447	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_97576691_97577008_97577042_97577326_97577447_97579093
transcript_15881.known	chr11	+	586	4	FSM	ENSMUSG00000078695.9	ENSMUST00000107585.9	586	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	482.196594301075	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGTTTCTGTGGTCAC	2342	False	NA	-1	True	AATAAA	-21	NA	97576668	97579447	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_97576748_97577008_97577042_97577326_97577447_97579093
transcript_15885.known	chr11	+	737	3	FSM	ENSMUSG00000078695.9	ENSMUST00000107583.3	737	3	0	0	0	0	multi-exon	FALSE	canonical	3	940	junction_1	75.5	6535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGTTTCTGTGGTCAC	2452	False	NA	-1	True	AATAAA	-21	NA	97576778	97579447	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_97577042_97577326_97577447_97579093
transcript_15891.known	chr11	-	1438	11	FSM	ENSMUSG00000018537.17	ENSMUST00000103148.8	1438	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	75.0416550990182	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAATATACATACTTATTT	NA	False	NA	8	True	NA	NA	NA	97590467	97580645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_97581185_97581786_97581868_97582509_97582606_97582683_97582739_97582852_97582962_97583194_97583246_97583329_97583386_97583551_97583649_97584241_97584395_97590031_97590127_97590361
transcript_15897.known	chr11	-	2347	10	FSM	ENSMUSG00000018537.17	ENSMUST00000169807.8	2347	10	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_9	43.2000800182158	543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTGTGGTTCTTTGGGA	NA	False	NA	-3	True	AATAAA	-17	NA	97590474	97579648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_97581185_97581786_97581868_97582509_97582606_97582683_97582739_97582852_97582962_97583194_97583246_97583329_97583386_97583551_97583649_97584241_97584395_97590361
transcript_15905.known	chr11	+	766	6	FSM	ENSMUSG00000069744.8	ENSMUST00000103147.5	766	6	0	0	0	0	multi-exon	FALSE	canonical	3	3867	junction_2	170.920566345891	14009	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCCTGCCTGCCTGCCTTT	NA	False	NA	22	True	AATAAA	-15	NA	97594224	97604326	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_97594317_97594613_97594799_97597623_97597732_97601927_97602106_97603262_97603358_97604218
transcript_15906.known	chr11	+	578	2	FSM	ENSMUSG00000069744.8	ENSMUST00000129197.2	578	2	0	0	0	0	multi-exon	FALSE	canonical	3	3872	junction_1	0	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCCTGCCTGCCTGCCTTT	4374	False	NA	22	True	AATAAA	-15	NA	97602887	97604326	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_97603358_97604218
transcript_15907.known	chr11	-	5053	10	FSM	ENSMUSG00000018547.9	ENSMUST00000018691.9	5053	10	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	2.70801280154532	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGTATGTGAGTCCTTTG	NA	False	NA	-5	True	AATAAA	-22	NA	97635530	97605982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_97609766_97610555_97610660_97611048_97611308_97613187_97613302_97613765_97613805_97615204_97615352_97617530_97617684_97620379_97620477_97623483_97623582_97635271
transcript_15908.known	chr11	-	3105	10	FSM	ENSMUSG00000018541.11	ENSMUST00000018685.9	3105	10	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_2	12.1969435556112	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGTAGAGCGATCTAC	7435	False	NA	-21	True	AATAAA	-19	NA	97657382	97636440	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_97638296_97638786_97638949_97641697_97641788_97643395_97643590_97644041_97644106_97644730_97644859_97646976_97647047_97648398_97648636_97654034_97654208_97657250
transcript_15916.nic	chr11	-	689	5	ISM	ENSMUSG00000018541.11	ENSMUST00000018685.9	3105	10	-54	8395	-54	2251	5prime_fragment	FALSE	canonical	3	108	junction_1	9.80752262296652	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAGAAGAAGAAGAAGAAGG	7381	False	NA	NA	False	NA	NA	NA	97657436	97644835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_97644859_97646976_97647047_97648398_97648636_97654034_97654208_97657250
transcript_15918.nic	chr11	-	360	2	ISM	ENSMUSG00000018541.11	ENSMUST00000107579.2	1838	3	-70	6947	-54	-6947	5prime_fragment	FALSE	canonical	3	135	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTGAGGAGCAGGCGGTT	7381	False	NA	0	True	GGGGCT	-7	NA	97657436	97654033	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_97654208_97657250
transcript_15919.known	chr11	-	624	3	FSM	ENSMUSG00000018543.9	ENSMUST00000107576.2	624	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGGTGTGCTCATTCTTT	NA	False	NA	NA	False	TTTAAA	-16	NA	97666744	97662306	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_97662564_97663541_97663642_97666477
transcript_1593.known	chr1	-	2359	10	FSM	ENSMUSG00000026047.14	ENSMUST00000065767.9	2359	10	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_6	34.7545183135931	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATCTGGCCTCTGCCTCTG	NA	False	NA	NA	False	AATAAA	-18	NA	44157968	44145705	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_44146265_44146924_44147033_44149153_44149244_44149894_44150105_44151804_44152043_44152162_44152336_44153600_44153679_44153853_44154060_44156197_44156404_44157477
transcript_15930.known	chr11	-	728	5	FSM	ENSMUSG00000071415.7	ENSMUST00000151118.2	728	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_4	6071.74712809254	25822	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAGCTGGTCTTCTTGAC	NA	False	NA	-35	True	ATTAAA	-11	NA	97673102	97668863	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_97668991_97669090_97669205_97672159_97672289_97672631_97672716_97672828
transcript_15939.known	chr11	-	137	1	FSM	ENSMUSG00000064901.3	ENSMUST00000082967.3	137	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTTCTGAAAGATTACTTA	NA	False	NA	-3	True	NA	NA	NA	97672601	97672464	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_97672500_97672600
transcript_15940.known	chr11	-	1059	5	FSM	ENSMUSG00000071415.7	ENSMUST00000103146.5	1059	5	0	0	0	0	multi-exon	FALSE	canonical	3	11120	junction_4	1307.0006455622	135809	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTGTGAGTGCTTGAGA	NA	False	NA	-9	True	AATAAA	-17	NA	97673263	97668352	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_97668991_97669090_97669205_97672159_97672289_97672631_97672716_97673169
transcript_15941.known	chr11	-	658	2	FSM	ENSMUSG00000071415.7	ENSMUST00000151965.2	658	2	0	0	0	0	multi-exon	FALSE	canonical	3	14449	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGGCAAACCAGAACTAAG	NA	False	NA	NA	False	NA	NA	NA	97673188	97672187	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_97672289_97672631
transcript_15942.known	chr11	-	334	3	FSM	ENSMUSG00000071415.7	ENSMUST00000128801.2	334	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	7224.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTGCTGGTGTTGGGGA	NA	False	NA	NA	False	NA	NA	NA	97673208	97672229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_97672289_97672631_97672868_97673169
transcript_15943.known	chr11	+	3540	7	FSM	ENSMUSG00000038366.16	ENSMUST00000043843.12	3540	7	0	0	0	0	multi-exon	FALSE	canonical	3	479	junction_6	89.534754270184	1184	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTAGGCTTCTTCCTCTTTG	4456	False	NA	10	True	AATAAA	-21	NA	97690390	97729590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_97690689_97697650_97697746_97706523_97706609_97715667_97715776_97724371_97724529_97724909_97725014_97726897
transcript_15950.known	chr11	+	1859	2	FSM	ENSMUSG00000050538.9	ENSMUST00000164364.2	1859	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAACAAACCA	5325	False	NA	NA	False	NA	NA	NA	97732140	97734635	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_97732374_97733009
transcript_15952.known	chr11	+	1118	2	FSM	ENSMUSG00000050538.9	ENSMUST00000170806.2	1118	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAAAGAATGAATGA	5329	False	NA	NA	False	AATAAA	-2	NA	97732144	97733869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_97732403_97733009
transcript_15953.known	chr11	+	2181	2	FSM	ENSMUSG00000050538.9	ENSMUST00000155954.3	2181	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAAAACAAACAAATCT	5310	False	NA	NA	False	NA	NA	NA	97732125	97734925	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_97732391_97733009
transcript_15954.known	chr11	-	2162	11	FSM	ENSMUSG00000070336.4	ENSMUST00000093939.4	2162	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	1.84661853126194	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATATATATGTATATTTA	7434	False	NA	NA	False	NA	NA	NA	97774980	97744651	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_97745315_97746178_97746339_97746981_97747125_97748493_97748641_97754184_97754362_97755884_97755994_97759417_97759496_97763683_97763761_97768782_97768954_97770209_97770415_97774748
transcript_15955.known	chr11	+	382	2	FSM	ENSMUSG00000086917.2	ENSMUST00000152825.2	382	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGCATTTACAAGTGATC	31	False	NA	NA	False	NA	NA	NA	97775419	97784637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_97775453_97784288
transcript_15963.nnic	chr11	-	520	2	NNC	ENSMUSG00000017417.15	novel	2881	14	NA	NA	0	-5913	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	0	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGATTCCTCACAATGGT	6905	False	NA	NA	False	AATAAA	-22	NA	97877225	97874994	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_97875353_97877063
transcript_15964.known	chr11	-	2439	14	FSM	ENSMUSG00000017417.15	ENSMUST00000107565.3	2439	14	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_12	10.3877488150122	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGGTGTGGTGGTGCTCA	6905	False	NA	NA	False	ATTAAA	-13	NA	97877225	97814481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_97815434_97816638_97816800_97819259_97819296_97823032_97823166_97824800_97824862_97829355_97829438_97831638_97831735_97844708_97844809_97845576_97845696_97846226_97846350_97846924_97846995_97847248_97847414_97869328_97869508_97877063
transcript_15965.known	chr11	-	1571	6	FSM	ENSMUSG00000038352.16	ENSMUST00000042971.16	1571	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	2.57681974534503	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCTCACTTCTTATTTTTG	NA	False	NA	3	True	ATTAAA	-26	NA	97887007	97880403	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_97881166_97883107_97883260_97884250_97884335_97885163_97885312_97885892_97885954_97886643
transcript_15972.known	chr11	-	823	3	FSM	ENSMUSG00000038352.16	ENSMUST00000107563.2	823	3	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	2	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAAAGATAAAAGAAGAACT	NA	False	NA	NA	False	NA	NA	NA	97886755	97884661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_97885312_97885892_97885954_97886643
transcript_15974.known	chr11	-	1745	13	FSM	ENSMUSG00000020882.18	ENSMUST00000107562.2	1745	13	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_7	26.3358384884341	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTCTGGTGTCTGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	97913460	97895750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_97896141_97896513_97896610_97900106_97900259_97900394_97900505_97900683_97900743_97901121_97901203_97901452_97901473_97902691_97902769_97903010_97903148_97903637_97903761_97907548_97907669_97910505_97910593_97913167
transcript_15975.known	chr11	-	1880	13	FSM	ENSMUSG00000020882.18	ENSMUST00000092736.11	1880	13	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_6	26.3832596335041	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTCTGGTGTCTGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	97913460	97895750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_97896141_97896513_97896610_97900106_97900259_97900394_97900505_97900683_97900743_97901121_97901203_97902168_97902324_97902691_97902769_97903010_97903148_97903637_97903761_97907548_97907669_97910505_97910593_97913167
transcript_1598.known	chr1	-	2085	9	FSM	ENSMUSG00000026047.14	ENSMUST00000141125.8	2085	9	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_5	36.3145976158349	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTCTGTTTTGTTACAGTT	NA	False	NA	-5	True	AATAAA	-17	NA	44157913	44146044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_44146265_44146924_44147033_44149153_44149244_44149894_44150105_44151804_44152336_44153600_44153679_44153853_44154060_44156197_44156404_44157477
transcript_1599.known	chr1	-	1765	9	FSM	ENSMUSG00000026047.14	ENSMUST00000027213.14	1765	9	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	107.302653159183	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGTCTGTTTTGTTACAG	NA	False	NA	-7	True	AATAAA	-15	NA	44157925	44146046	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_44146265_44146924_44147033_44149153_44149244_44151804_44152043_44152162_44152336_44153600_44153679_44153853_44154060_44156197_44156404_44157477
transcript_16.known	ERCC-00039	+	724	1	FSM	ERCC-00039A	DQ883656	724	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	724	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00039_+_0_700
transcript_16006.known	chr11	+	737	6	FSM	ENSMUSG00000017404.13	ENSMUST00000092425.11	737	6	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	6391.5163271324	26856	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGCTGCTGTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	97917535	97921318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_97917589_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096
transcript_16007.known	chr11	+	751	6	FSM	ENSMUSG00000017404.13	ENSMUST00000017548.7	751	6	0	0	0	0	multi-exon	FALSE	canonical	3	9068	junction_1	2898.60244945732	104437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGCTGCTGTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	97917749	97921318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_97917817_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096
transcript_16008.known	chr11	-	3050	11	FSM	ENSMUSG00000017400.11	ENSMUST00000017544.9	3050	11	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_9	5.98748695196908	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTGCTTGGTGTATC	5359	False	NA	-2	True	ATTAAA	-15	NA	97944288	97927448	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_97928897_97930444_97930583_97930923_97930976_97931247_97931346_97931964_97932027_97932129_97932203_97932292_97932406_97933354_97933446_97933582_97933681_97934305_97934613_97943718
transcript_16009.nic	chr11	-	2535	15	NIC	ENSMUSG00000020883.19	novel	8601	15	NA	NA	-90	2388	combination_of_known_junctions	TRUE	canonical	3	15	junction_14	36.7548414137095	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTACCATCAGGGGACCC	2284	False	NA	-15	True	AATAAA	-17	NA	98041319	97979528	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_97980525_97981483_97981697_97982970_97983028_97983938_97983984_97985958_97986020_97987754_97987886_97989245_97989321_97990808_97990936_97992526_97992623_98000319_98000389_98001760_98001856_98004046_98004122_98006218_98006274_98019140_98019203_98040941
transcript_16013.nic	chr11	-	2538	18	NIC	ENSMUSG00000018160.16	novel	8024	17	NA	NA	-12	294	combination_of_known_junctions	FALSE	canonical	3	134	junction_1	37.2323667653306	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGCTGACCTTATTGCAG	NA	False	NA	-8	True	AATGAA	-15	NA	98084131	98048284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_98048961_98049154_98049296_98051762_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
transcript_16017.known	chr11	-	8024	17	FSM	ENSMUSG00000018160.16	ENSMUST00000107545.9	8024	17	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_3	32.1266414950271	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGCCTCTGTGTTTTTTA	NA	False	NA	NA	False	AATAAA	-41	NA	98084119	98042980	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_98049296_98051762_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
transcript_16018.nic	chr11	-	2170	16	ISM	ENSMUSG00000018160.16	ENSMUST00000107545.9	8024	17	-12	8333	-12	-2735	5prime_fragment	FALSE	canonical	3	176	junction_2	32.5798847279865	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACTGTTGCCTCCATAGA	NA	False	NA	NA	False	AATAAA	-20	NA	98084131	98051313	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
transcript_16019.known	chr11	-	1372	10	FSM	ENSMUSG00000018160.16	ENSMUST00000129557.2	1372	10	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	68.4675285747617	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTAGGACTTTGCATATTT	NA	False	NA	NA	False	AATAAA	-15	NA	98084102	98060736	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_98061267_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
transcript_16020.known	chr11	-	2627	18	FSM	ENSMUSG00000018160.16	ENSMUST00000092735.12	2627	18	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	53.6447367918524	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCCTCTGTGTTTTTTAT	NA	False	NA	NA	False	AATAAA	-42	NA	98084086	98042979	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_98043790_98049154_98049296_98051762_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
transcript_16023.known	chr11	+	2001	7	FSM	ENSMUSG00000061718.13	ENSMUST00000078694.13	2001	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	2.21108319357027	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGAGACTCCTCTTTCA	NA	False	NA	NA	False	AATAAA	-16	NA	98239229	98248622	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_98240001_98241394_98241456_98241710_98241734_98242091_98242168_98246152_98246336_98247650_98247774_98247858
transcript_16026.known	chr11	+	2070	15	FSM	ENSMUSG00000018167.11	ENSMUST00000018311.5	2070	15	0	0	0	0	multi-exon	TRUE	canonical	3	120	junction_11	11.573412528335	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAAAATGCAGGGTGTG	875	False	NA	-2	True	AATAAA	-1	NA	98249193	98271925	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_98249335_98262895_98263169_98265905_98265984_98266301_98266380_98266500_98266555_98267315_98267434_98267577_98267677_98267890_98267947_98268275_98268369_98268981_98269045_98269160_98269257_98269563_98269644_98269719_98269825_98270798_98270893_98271283
transcript_16030.known	chr11	-	2419	8	FSM	ENSMUSG00000038208.14	ENSMUST00000090827.12	2419	8	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_7	8.7084289452161	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGACTCTGCTACTCTAT	NA	False	NA	NA	False	AATAAA	-21	NA	98291316	98279502	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_98280928_98281112_98281318_98281502_98281640_98281905_98281968_98282520_98282584_98288721_98288875_98289710_98289809_98291040
transcript_16033.known	chr11	-	747	4	FSM	ENSMUSG00000002580.8	ENSMUST00000002655.8	747	4	0	0	0	0	multi-exon	FALSE	canonical	3	749	junction_2	62.9567752950829	5267	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCGTGTGTTTATGTCCA	NA	False	NA	1	True	AATAAA	-26	NA	98329817	98328533	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_98328972_98329062_98329140_98329472_98329571_98329683
transcript_16034.known	chr11	+	2397	15	FSM	ENSMUSG00000019312.11	ENSMUST00000019456.5	2397	15	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	7.18736135624932	188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGAGTCCTGTCTGGCA	NA	False	NA	18	True	AATAAA	-18	NA	98337659	98346199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_98338076_98341591_98341749_98341853_98342005_98342131_98342289_98342420_98342543_98342667_98342746_98342944_98343095_98344006_98344118_98344320_98344420_98344618_98344700_98344797_98344915_98345046_98345108_98345223_98345312_98345408_98345503_98345684
transcript_16037.nnic	chr11	-	1027	3	NNC	ENSMUSG00000018168.9	novel	863	3	NA	NA	-145	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCTTTGGCAGCATGCTT	4813	False	NA	NA	False	AATAAA	-22	NA	98379991	98375091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_98375688_98376399_98376517_98379677
transcript_16038.known	chr11	-	863	3	FSM	ENSMUSG00000018168.9	ENSMUST00000140876.2	863	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTCTTTGGCAGCATGCT	4958	False	NA	NA	False	AATAAA	-21	NA	98379846	98375092	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_98375670_98376399_98376517_98379677
transcript_16039.known	chr11	-	2184	4	FSM	ENSMUSG00000038150.8	ENSMUST00000052919.8	2184	4	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_2	8.33999733546454	434	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGGCCTCTGCTTCCTG	1323	False	NA	1	True	AATAAA	-23	NA	98478194	98472081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_98473674_98473961_98474114_98474767_98474967_98477953
transcript_16041.known	chr11	-	1311	1	FSM	ENSMUSG00000078134.2	ENSMUST00000104933.2	1311	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19526	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAGAAAAAAGAAAGGA	NA	False	NA	NA	False	ATTAAA	-32	NA	98516487	98515176	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_98515200_98516500
transcript_16043.known	chr11	+	2726	12	FSM	ENSMUSG00000017204.5	ENSMUST00000017348.3	2726	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.46586504514519	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTTGTCACCAGTCTTG	4001	False	NA	NA	False	ATTAAA	-41	NA	98555176	98568534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_98555265_98556881_98557101_98557276_98557458_98560444_98560611_98561582_98561680_98562143_98562192_98562556_98562584_98563120_98563142_98563801_98563957_98564431_98564547_98566698_98566773_98566999
transcript_16046.nic	chr11	+	984	5	ISM	ENSMUSG00000017204.5	ENSMUST00000017348.3	2726	12	7807	1053	7807	-1053	3prime_fragment	FALSE	canonical	1	1	junction_1	0.707106781186548	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTTGAGTCACTTCATT	NA	False	NA	NA	False	NA	NA	NA	98562983	98567481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_98563142_98563801_98563957_98564431_98564547_98566698_98566773_98566999
transcript_16047.nic	chr11	+	1047	4	ISM	ENSMUSG00000017204.5	ENSMUST00000017348.3	2726	12	8404	1053	8404	-1053	3prime_fragment	FALSE	canonical	2	2	junction_1	0.471404520791032	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTTGAGTCACTTCATT	NA	False	NA	NA	False	NA	NA	NA	98563580	98567481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_98563957_98564431_98564547_98566698_98566773_98566999
transcript_16049.nic	chr11	+	861	3	ISM	ENSMUSG00000017204.5	ENSMUST00000017348.3	2726	12	9065	1053	9065	-1053	3prime_fragment	FALSE	canonical	2	2	junction_1	0.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTTGAGTCACTTCATT	NA	False	NA	NA	False	NA	NA	NA	98564241	98567481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_98564547_98566698_98566773_98566999
transcript_16051.known	chr11	+	2148	12	FSM	ENSMUSG00000017221.15	ENSMUST00000017365.15	2148	12	0	0	0	0	multi-exon	FALSE	canonical	3	1019	junction_3	95.9435956889203	9221	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTGTGCACGGTGTCAG	NA	False	NA	16	True	AATAAA	-14	NA	98573379	98586805	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_98573764_98576307_98576499_98576759_98576898_98578503_98578641_98581288_98581480_98581741_98581846_98584208_98584324_98584404_98584525_98584630_98584735_98584963_98585120_98586188_98586240_98586348
transcript_16053.known	chr11	-	3410	26	FSM	ENSMUSG00000017210.15	ENSMUST00000017354.13	3410	26	0	0	0	0	multi-exon	TRUE	canonical	3	102	junction_19	25.7353919729232	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTGTGTGGGGACAGTT	NA	False	NA	-2	True	AATAAA	-23	NA	98620261	98595416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_98595843_98595944_98596094_98596347_98596429_98597204_98597305_98597651_98597743_98597943_98598126_98598362_98598628_98600407_98600584_98600888_98600989_98601100_98601280_98601598_98601682_98602088_98602127_98603358_98603502_98603979_98604086_98604858_98604946_98605227_98605311_98605906_98605955_98606467_98606582_98606956_98607108_98607239_98607352_98608735_98608969_98609322_98609397_98609643_98609683_98619440_98619524_98619610_98619814_98620197
transcript_16054.nic	chr11	-	474	3	ISM	ENSMUSG00000017210.15	ENSMUST00000126565.2	416	5	-8	9955	-8	-9868	5prime_fragment	FALSE	canonical	1	3	junction_2	74	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATATTACATTTATTTAC	NA	False	NA	NA	False	AATGAA	-1	NA	98620208	98619331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_98619524_98619610_98619814_98620129
transcript_16055.nic	chr11	-	452	3	ISM	ENSMUSG00000017210.15	ENSMUST00000144048.2	537	4	-25	9868	7	-9868	5prime_fragment	FALSE	canonical	3	109	junction_2	21	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATATTACATTTATTTAC	NA	False	NA	NA	False	AATGAA	-1	NA	98620254	98619331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_98619524_98619610_98619814_98620197
transcript_16060.known	chr11	+	2246	9	FSM	ENSMUSG00000058756.14	ENSMUST00000103139.11	2246	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	12.2519131159179	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAAAAAACAAAAAAC	6352	False	NA	NA	False	TATAAA	-17	NA	98632698	98655937	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_98632833_98644115_98644465_98646933_98647002_98647748_98647850_98651701_98651850_98652546_98652753_98653746_98653894_98654354_98654614_98655103
transcript_16061.known	chr11	-	2721	8	FSM	ENSMUSG00000020889.12	ENSMUST00000064941.7	2721	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_7	7.40104791256493	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCTTCTGTGATGTGTG	NA	False	NA	0	True	NA	NA	NA	98666159	98658757	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_98659246_98659874_98660086_98660528_98660715_98661013_98661658_98662025_98662171_98662262_98662352_98662618_98662961_98665543
transcript_16064.known	chr11	+	535	4	FSM	ENSMUSG00000058756.14	ENSMUST00000153043.8	535	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	9.53356643071673	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCTGTATCACTTGTGAGG	6637	False	NA	NA	False	NA	NA	NA	98632983	98647821	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_98633029_98644115_98644465_98646933_98647002_98647748
transcript_16066.nic	chr11	+	1325	3	ISM	ENSMUSG00000058756.14	ENSMUST00000064187.12	2452	10	21630	0	9855	0	3prime_fragment	FALSE	canonical	3	46	junction_2	2	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCGTGTGCCTCCTCCAGG	7503	False	NA	29	True	NA	NA	NA	98654266	98659832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_98654614_98655103_98655232_98658982
transcript_16068.nic	chr11	+	1208	3	ISM	ENSMUSG00000058756.14	ENSMUST00000124072.2	1240	9	9855	-603	9855	0	3prime_fragment	FALSE	canonical	3	17	junction_2	16.5	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCGTGTGCCTCCTCCAGG	7503	False	NA	29	True	NA	NA	NA	98654266	98659832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_98654614_98655103_98655232_98659099
transcript_16072.known	chr11	-	680	4	FSM	ENSMUSG00000075576.13	ENSMUST00000153181.8	680	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAACACTGAGGTATTTCA	6854	False	NA	NA	False	NA	NA	NA	98700913	98688532	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_98688627_98689947_98690060_98692791_98692854_98700501
transcript_16073.known	chr11	+	2077	3	FSM	ENSMUSG00000038020.6	ENSMUST00000139889.2	2077	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCAACTTCCTTATGTTCT	237	False	NA	NA	False	AATACA	-13	NA	98741157	98743825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_98741256_98741610_98741666_98741901
transcript_16074.nic	chr11	+	1456	5	ISM	ENSMUSG00000038013.15	ENSMUST00000037480.9	7011	8	-19	12187	-19	13	5prime_fragment	FALSE	canonical	2	8	junction_1	4.74341649025257	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACTCATTGTGGAC	923	False	NA	NA	False	AAGAAA	-2	NA	98754444	98783679	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_98754729_98775799_98775931_98781525_98781659_98782321_98782439_98782888
transcript_16075.known	chr11	+	660	5	FSM	ENSMUSG00000038013.15	ENSMUST00000142414.8	660	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	7.25861557047899	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGTGCCAACGCGCCCCCC	942	False	NA	NA	False	NA	NA	NA	98754463	98783125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_98754506_98775799_98775931_98781525_98781659_98782321_98782439_98782888
transcript_16077.known	chr11	+	7011	8	FSM	ENSMUSG00000038013.15	ENSMUST00000037480.9	7011	8	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	4.16986271980755	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTTTCTGACTTAATA	942	False	NA	40	True	NA	NA	NA	98754463	98795866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_98754729_98775799_98775931_98781525_98781659_98782321_98782439_98782888_98783546_98786942_98787153_98789556_98789659_98790470
transcript_1608.known	chr1	-	1272	8	FSM	ENSMUSG00000026049.12	ENSMUST00000027215.12	1272	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	186.541782812039	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGCCTTTGTTTTACTCT	NA	False	NA	0	True	ATTAAA	-20	NA	44141551	44125772	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44140626_44140683_44141059_44141118_44141487
transcript_16083.known	chr11	+	4614	12	FSM	ENSMUSG00000017499.16	ENSMUST00000092706.13	4614	12	0	0	0	0	multi-exon	FALSE	canonical	3	550	junction_4	61.3919799860826	387	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCAAGATGCCTCTGCCAT	17	False	NA	NA	False	AATAAA	-18	NA	98798626	98814762	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_98798808_98799462_98799657_98801012_98801298_98801403_98801604_98802213_98802390_98802984_98803092_98804700_98804841_98805913_98806015_98807779_98807845_98810028_98810232_98811498_98811640_98811941
transcript_16090.known	chr11	+	2469	9	FSM	ENSMUSG00000037992.17	ENSMUST00000107475.9	2469	9	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_2	61.7220331405245	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATACTGAAGGAATTTGT	NA	False	NA	6	True	NA	NA	NA	98828523	98864988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_98828706_98841070_98841622_98857172_98857322_98858870_98859013_98860982_98861144_98861318_98861496_98862407_98862613_98863337_98863497_98864245
transcript_16092.known	chr11	+	3238	8	FSM	ENSMUSG00000037992.17	ENSMUST00000107473.3	3238	8	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	54.9043695521437	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTCTTGCCTCTCTGCCT	7438	False	NA	14	True	AATAAA	-19	NA	98851237	98865768	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_98851960_98857172_98857322_98858870_98859013_98860982_98861144_98861318_98861496_98862407_98862613_98863337_98863497_98864245
transcript_16098.known	chr11	-	5221	36	FSM	ENSMUSG00000020914.18	ENSMUST00000068031.8	5221	36	0	0	0	0	multi-exon	FALSE	canonical	3	1094	junction_4	183.786113485769	813	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATTCCTCTTATTTTAAC	NA	False	NA	0	True	AATAAA	-22	NA	98915015	98883768	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_98884240_98884589_98884762_98885032_98885233_98886069_98886205_98886506_98886551_98886675_98886800_98887554_98887702_98888654_98888746_98889987_98890174_98891593_98891678_98891799_98891959_98892175_98892268_98893699_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896978_98897785_98897908_98898006_98898122_98900055_98900149_98900415_98900526_98900618_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
transcript_16099.known	chr11	-	632	3	FSM	ENSMUSG00000020914.18	ENSMUST00000129777.2	632	3	0	0	0	0	multi-exon	FALSE	canonical	3	1518	junction_2	50	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAGTCCAATAAAGTCCAG	NA	False	NA	NA	False	AAAAAG	-6	NA	98915004	98912910	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_98913257_98913665_98913819_98914871
transcript_16100.known	chr11	+	3831	4	FSM	ENSMUSG00000017493.13	ENSMUST00000017637.13	3831	4	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_3	1.69967317119759	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCTGGCAGATTTTATTT	4229	False	NA	NA	False	NA	NA	NA	98932069	98945218	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_98932672_98939051_98939198_98939919_98940055_98942270
transcript_16101.known	chr11	-	1978	3	FSM	ENSMUSG00000037944.9	ENSMUST00000103134.4	1978	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGGAGGAAATTCCTTGG	5582	False	NA	NA	False	AATAAA	-35	NA	99045903	99035021	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_99036861_99039860_99039911_99045814
transcript_16103.known	chr11	-	2919	11	FSM	ENSMUSG00000037935.17	ENSMUST00000103133.4	2919	11	0	0	0	0	multi-exon	FALSE	canonical	3	598	junction_2	51.2922021363872	876	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCAGTGTTTTTATTGC	NA	False	NA	-2	True	AATAAA	-15	NA	99121843	99099872	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_99101104_99103945_99104157_99104859_99104962_99105939_99106113_99110045_99110218_99110440_99110573_99111480_99111562_99115863_99115969_99119100_99119145_99119322_99119375_99121227
transcript_16122.known	chr11	-	3072	6	FSM	ENSMUSG00000035849.15	ENSMUST00000103132.10	3072	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1.35646599662505	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTAAGGCTTCCTTGTATT	6814	False	NA	NA	False	AATAAA	-19	NA	99134893	99123586	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_99125974_99126962_99127096_99127290_99127368_99129359_99129581_99131318_99131448_99134768
transcript_16124.known	chr11	-	2094	8	FSM	ENSMUSG00000019761.11	ENSMUST00000103131.5	2094	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	28.6940227011744	876	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGTCAGAATTATTATTTA	5072	False	NA	NA	False	AATAAA	-38	NA	99280190	99276079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_99276463_99276756_99277096_99277356_99277575_99277823_99277950_99278055_99278218_99278323_99278481_99278835_99278919_99279564
transcript_16126.known	chr11	-	557	2	FSM	ENSMUSG00000019761.11	ENSMUST00000211768.2	557	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAACTATAAAAATCTGTCA	8339	False	NA	NA	False	AATAAA	-25	NA	99276923	99276092	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_99276463_99276736
transcript_16128.nic	chr11	-	908	4	ISM	ENSMUSG00000020912.5	ENSMUST00000017741.4	1852	8	3813	0	3813	0	3prime_fragment	FALSE	canonical	1	1	junction_3	2.62466929133727	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGTGCCTCTCCTTGA	9325	False	NA	NA	False	ATTAAA	-20	NA	99309272	99306491	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_99306935_99307720_99307792_99308740_99308962_99309099
transcript_16131.known	chr11	-	1654	8	FSM	ENSMUSG00000044041.5	ENSMUST00000007275.3	1654	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	0.494871659305394	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTTGTTTCTGGCCTGG	3818	False	NA	NA	False	AATAAA	-21	NA	100012392	100008152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100008493_100008808_100008832_100009558_100009780_100009869_100009996_100010106_100010269_100010447_100010605_100010798_100010882_100011850
transcript_16132.known	chr11	-	1576	6	FSM	ENSMUSG00000020911.15	ENSMUST00000007317.8	1576	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_5	2.56124969497314	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATACCTTGCTTATTTCAG	9599	False	NA	NA	False	AATAAA	-21	NA	100036946	100031635	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100031994_100032105_100032232_100032348_100032511_100032877_100033035_100033251_100033335_100036256
transcript_16133.known	chr11	+	357	1	FSM	ENSMUSG00000082456.2	ENSMUST00000119257.2	357	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	119	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCCTAGGCCTACCCCCTA	333	False	NA	NA	False	AATGAA	-16	NA	100134098	100134455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_100134100_100134500
transcript_16136.known	chr11	-	1551	8	FSM	ENSMUSG00000035557.10	ENSMUST00000080893.7	1551	8	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_4	2.1946130708196	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGGACTGGTGTGTGTG	NA	False	NA	48	True	AATAAA	-16	NA	100151855	100147042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100147323_100148145_100148172_100148258_100148480_100148568_100148695_100149234_100149397_100149998_100150156_100150520_100150604_100151359
transcript_16139.nnic	chr11	-	1515	9	NNC	ENSMUSG00000053654.8	novel	1542	8	NA	NA	-1466	0	at_least_one_novel_splicesite	TRUE	canonical	3	10	junction_8	27.8632262130572	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGAATTCATCATTTGT	NA	False	NA	-11	True	AATAAA	-18	NA	100162163	100153712	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_100153994_100154119_100154170_100155303_100155525_100155754_100155881_100156425_100156588_100157760_100157918_100158025_100158109_100160235_100160370_100161862
transcript_16140.nnic	chr11	-	1338	9	NNC	ENSMUSG00000053654.8	novel	1542	8	NA	NA	-1895	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_8	29.6858552175948	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGAATTCATCATTTGT	NA	False	NA	-11	True	AATAAA	-18	NA	100162592	100153712	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_100153994_100154119_100154170_100155303_100155525_100155754_100155881_100156425_100156588_100157760_100157918_100158025_100158109_100160235_100160370_100162468
transcript_16143.known	chr11	-	1542	8	FSM	ENSMUSG00000053654.8	ENSMUST00000017270.8	1542	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_5	18.9510648023497	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGAATTCATCATTTGT	NA	False	NA	-11	True	AATAAA	-18	NA	100160697	100153712	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100153994_100154119_100154170_100155303_100155525_100155754_100155881_100156425_100156588_100157760_100157918_100158025_100158109_100160235
transcript_16148.known	chr11	-	1062	5	FSM	ENSMUSG00000053654.8	ENSMUST00000107406.2	1062	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	11.3688170009021	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCATCATTTGTCCTGT	NA	False	NA	-6	True	AATAAA	-23	NA	100156804	100153707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100153994_100154119_100154170_100155303_100155525_100155754_100155881_100156425
transcript_16159.known	chr11	+	1322	4	FSM	ENSMUSG00000035530.14	ENSMUST00000049385.14	1322	4	0	0	0	0	multi-exon	FALSE	canonical	3	11207	junction_1	646.711854091312	39471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGATGTCCAGATTGCAC	3957	False	NA	21	True	AATAAA	-17	NA	100210710	100212922	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_100210987_100211491_100211656_100211773_100211876_100212142
transcript_16160.known	chr11	+	447	3	FSM	ENSMUSG00000035530.14	ENSMUST00000139846.2	447	3	0	0	0	0	multi-exon	FALSE	canonical	3	12221	junction_1	273.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGGTTTTAAGTGCTTGT	4590	False	NA	NA	False	NA	NA	NA	100211343	100212175	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_100211656_100211773_100211876_100212142
transcript_16161.known	chr11	+	383	2	FSM	ENSMUSG00000035530.14	ENSMUST00000132618.2	383	2	0	0	0	0	multi-exon	FALSE	canonical	3	12768	junction_1	0	844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTGTGTAGTCTTGAAGT	4956	False	NA	-1	True	AATAAA	-13	NA	100211709	100212359	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_100211876_100212142
transcript_16162.known	chr11	+	460	3	FSM	ENSMUSG00000017165.2	ENSMUST00000017309.2	460	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCCTGAGTCATGTCATGT	NA	False	NA	NA	False	ATTAAA	-21	NA	100225232	100227822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_100225285_100227303_100227520_100227630
transcript_16163.nnic	chr11	-	3147	13	NNC	ENSMUSG00000006930.16	novel	3316	12	NA	NA	-5	-2	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_2	196.783863385413	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCCTGTCTCAGTTGTG	2002	False	NA	-4	True	AATAAA	-15	NA	100246959	100238154	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_100239306_100239477_100239686_100240062_100240446_100242035_100242128_100242243_100242379_100242668_100242732_100243010_100243142_100244369_100244437_100244513_100244614_100244782_100244962_100245071_100245189_100245497_100245575_100246515
transcript_16166.known	chr11	-	2120	11	FSM	ENSMUSG00000006930.16	ENSMUST00000103124.11	2120	11	0	0	0	0	multi-exon	FALSE	canonical	3	486	junction_1	44.9070150421958	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCCAACCCCGCAGCAGC	2048	False	NA	NA	False	NA	NA	NA	100246913	100239684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100240446_100242035_100242128_100242243_100242379_100242668_100242732_100243010_100243142_100244369_100244437_100244513_100244614_100244782_100244962_100245071_100245189_100245497_100245575_100246515
transcript_16169.known	chr11	-	3316	12	FSM	ENSMUSG00000006930.16	ENSMUST00000138603.9	3316	12	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	156.163931667075	501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCTGTCTCAGTTGTGTT	2007	False	NA	-2	True	AATAAA	-17	NA	100246954	100238152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100239686_100240062_100240446_100242035_100242128_100242243_100242379_100242668_100242732_100243010_100243142_100244369_100244437_100244513_100244614_100244782_100244962_100245071_100245189_100245497_100245575_100246515
transcript_16176.known	chr11	-	3205	14	FSM	ENSMUSG00000001552.15	ENSMUST00000001592.15	3205	14	0	0	0	0	multi-exon	FALSE	canonical	3	399	junction_13	65.0294425807792	292	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGCTGTTAAAAGCATT	NA	False	NA	-17	True	AATAAA	-18	NA	100288575	100261444	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100262276_100263121_100263288_100263481_100263522_100264903_100265026_100265151_100265303_100267548_100267825_100268914_100269254_100270347_100270452_100271369_100271515_100272501_100272704_100273832_100274072_100274220_100274481_100276998_100277215_100288461
transcript_16178.known	chr11	-	2178	8	FSM	ENSMUSG00000006931.16	ENSMUST00000066489.13	2178	8	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_5	9.9979589753844	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCCAGTCTGCAAGGTGG	NA	False	NA	NA	False	AATAAA	-31	NA	100305662	100299281	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100299971_100300188_100300334_100301939_100302024_100302554_100302701_100303526_100303656_100304434_100304607_100304752_100304906_100305002
transcript_1618.known	chr1	-	935	7	FSM	ENSMUSG00000026049.12	ENSMUST00000133677.8	935	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	163.292596960861	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACGGTTGGTTAATTTGAT	NA	False	NA	NA	False	AATAAA	-2	NA	44141583	44126019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139096_44141059_44141118_44141487
transcript_16180.known	chr11	+	2584	10	FSM	ENSMUSG00000001555.11	ENSMUST00000001595.10	2584	10	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	6.35959467611297	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTCCAGAAGTGGACAGA	NA	False	NA	13	True	AATAAA	-14	NA	100306522	100315650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_100306852_100311225_100311372_100311716_100311907_100312019_100312166_100312469_100312660_100312769_100312916_100313451_100313645_100313910_100314054_100314261_100314426_100314713
transcript_16185.known	chr11	-	1344	8	FSM	ENSMUSG00000017176.18	ENSMUST00000092689.9	1344	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_7	183.081112836772	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATGCACGCGTCTTTAAT	NA	False	NA	-5	True	ATTAAA	-16	NA	100331846	100320181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331753
transcript_16193.known	chr11	-	1399	9	FSM	ENSMUSG00000017176.18	ENSMUST00000092688.12	1399	9	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_8	92.107868149252	2005	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCACGCGTCTTTAATCCC	NA	False	NA	-2	True	ATTAAA	-19	NA	100331915	100320178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331654_100331754_100331869
transcript_16194.known	chr11	-	1348	8	FSM	ENSMUSG00000017176.18	ENSMUST00000107397.2	1348	8	0	0	0	0	multi-exon	FALSE	canonical	3	485	junction_1	42.2470866040561	536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGTGGATGCACGCGTCTTT	NA	False	NA	-8	True	ATTAAA	-13	NA	100331754	100320184	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331654
transcript_16195.known	chr11	-	598	4	FSM	ENSMUSG00000017176.18	ENSMUST00000130666.2	598	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	238.736023441978	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGGGTTTATTTTTATTA	NA	False	NA	NA	False	AGTAAA	-17	NA	100331753	100330378	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100330761_100330865_100330913_100331010_100331081_100331654
transcript_16196.nnic	chr11	+	1329	4	NNC	ENSMUSG00000001558.6	novel	2017	5	NA	NA	-811	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	6.59966329107444	165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTAAGAGTACTGGAAAATG	NA	False	NA	NA	False	AATAAA	-16	NA	100331931	100347848	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_100332042_100337946_100338565_100347109_100347260_100347397
transcript_16199.known	chr11	-	2393	2	FSM	ENSMUSG00000048732.6	ENSMUST00000056665.4	2393	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGTCTAGTTACTTGGCC	7694	False	NA	-8	True	ATTAAA	-16	NA	100363567	100353439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100355272_100363006
transcript_16200.known	chr11	-	4426	29	FSM	ENSMUSG00000020917.18	ENSMUST00000107389.8	4426	29	0	0	0	0	multi-exon	FALSE	canonical	3	1365	junction_16	642.699119466695	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGATGCTCTTTTATGTTC	NA	False	NA	-14	True	AATAAA	-18	NA	100418826	100367178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100393985_100394016_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
transcript_16202.known	chr11	-	4393	28	FSM	ENSMUSG00000020917.18	ENSMUST00000007131.16	4393	28	0	0	0	0	multi-exon	FALSE	canonical	3	2198	junction_15	363.337822300204	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	NA	False	NA	-17	True	AATAAA	-15	NA	100418826	100367181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
transcript_16208.nic	chr11	-	2516	12	ISM	ENSMUSG00000020917.18	ENSMUST00000165111.8	4162	27	29321	-2	-78	0	3prime_fragment	FALSE	canonical	3	3497	junction_4	188.959482298225	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	1671	False	NA	-17	True	AATAAA	-15	NA	100385103	100367181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709
transcript_16217.nic	chr11	+	1408	6	NIC	ENSMUSG00000006784.15	novel	2240	12	NA	NA	4111	0	intron_retention	FALSE	canonical	3	29	junction_1	2.60768096208106	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTTGAGTGACACTGTGC	2533	False	NA	NA	False	ATTAAA	-22	NA	100444483	100462789	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_100444898_100452643_100452731_100454355_100454553_100457734_100457836_100460681_100460767_100462265
transcript_16221.known	chr11	-	1900	15	FSM	ENSMUSG00000014195.17	ENSMUST00000239410.2	1900	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_14	710.897567896259	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAACCATGAGTGTGGACA	5362	False	NA	NA	False	AATGAA	-41	NA	100511014	100473880	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490010_100490136_100492553_100492643_100510353_100510639_100510851
transcript_16224.known	chr11	-	1399	13	FSM	ENSMUSG00000014195.17	ENSMUST00000239389.2	1399	13	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_12	702.16860016349	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAGGCCAACTACTTAAAA	5943	False	NA	NA	False	NA	NA	NA	100510433	100473924	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490010_100490136_100510353
transcript_1623.nic	chr1	-	1317	7	NIC	ENSMUSG00000026049.12	novel	1272	8	NA	NA	-51	0	combination_of_known_junctions	FALSE	canonical	3	144	junction_6	127.50348579113	992	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGCCTTTGTTTTACTCT	NA	False	NA	0	True	ATTAAA	-20	NA	44141652	44125772	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44141059_44141118_44141487
transcript_16231.known	chr11	+	2357	4	FSM	ENSMUSG00000006782.17	ENSMUST00000103120.5	2357	4	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_2	8.2192186706253	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTGCTATCACTCTTG	NA	False	NA	19	True	AATAAA	-15	NA	100465729	100472554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_100465895_100467061_100467732_100469738_100469879_100471172
transcript_16233.known	chr11	+	2097	4	FSM	ENSMUSG00000017837.13	ENSMUST00000017981.10	2097	4	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_1	10.0332779621949	500	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCCCGTCCCCTACCCCT	NA	False	NA	17	True	AATAAA	-24	NA	100513701	100518433	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_100513835_100515017_100515126_100515768_100516011_100516819
transcript_16238.known	chr11	-	1771	14	FSM	ENSMUSG00000014195.17	ENSMUST00000239499.2	1771	14	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_11	720.895014063612	731	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGTCCTTGGCTTTGGC	5919	False	NA	-21	True	AATAAA	-15	NA	100510457	100473643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490032_100490136_100492553_100492643_100510353
transcript_16239.known	chr11	-	1049	5	FSM	ENSMUSG00000014195.17	ENSMUST00000154972.9	1049	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	1222.31570696772	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGGCTCCTTTTGTTTTG	5930	False	NA	NA	False	NA	NA	NA	100510446	100488252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100488881_100489440_100489555_100490010_100490136_100492553_100492643_100510353
transcript_16240.known	chr11	-	2946	18	FSM	ENSMUSG00000020918.15	ENSMUST00000153526.8	2946	18	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_12	124.621058832359	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATTGTTTTTTGGGGGG	7071	False	NA	-1	True	AATAAA	-18	NA	100602999	100595571	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100596258_100596401_100596487_100596586_100596651_100596784_100596822_100596908_100597024_100597175_100597320_100597683_100597795_100599034_100599162_100599372_100599582_100599671_100599809_100599901_100600004_100600208_100600316_100601075_100601463_100601547_100601730_100601965_100602056_100602158_100602305_100602638_100602763_100602906
transcript_16241.known	chr11	-	3046	18	FSM	ENSMUSG00000020918.15	ENSMUST00000103118.4	3046	18	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_10	104.829867108865	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATTGTTTTTTGGGGGG	6779	False	NA	-1	True	AATAAA	-18	NA	100603291	100595571	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100596258_100596401_100596487_100596586_100596651_100596784_100596822_100596908_100597024_100597175_100597320_100597683_100597795_100599034_100599162_100599372_100599582_100599671_100599812_100599901_100600004_100600208_100600316_100601270_100601463_100601547_100601730_100601965_100602056_100602158_100602305_100602638_100602763_100602906
transcript_16243.known	chr11	-	3269	16	FSM	ENSMUSG00000020918.15	ENSMUST00000126299.2	3269	16	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_8	109.540170206591	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATTGTTTTTTGGGGGG	6795	False	NA	-1	True	AATAAA	-18	NA	100603275	100595571	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100596258_100596401_100596487_100596586_100596651_100596784_100597320_100597683_100597795_100599034_100599162_100599372_100599582_100599671_100599812_100599901_100600004_100600208_100600316_100601270_100601463_100601547_100601730_100601965_100602056_100602158_100602305_100602638_100602763_100602906
transcript_16247.known	chr11	-	1915	6	FSM	ENSMUSG00000019173.12	ENSMUST00000107364.8	1915	6	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_2	14.961283367412	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAAGATTGTTGGTGTCT	NA	False	NA	-10	True	ATTAAA	-17	NA	100629041	100605834	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100606989_100607583_100607678_100608667_100608791_100609256_100609409_100610740_100610995_100628903
transcript_16249.known	chr11	-	1967	6	FSM	ENSMUSG00000019173.12	ENSMUST00000019317.12	1967	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	59.308009577122	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGAAGATTGTTGGTGT	NA	False	NA	-12	True	ATTAAA	-15	NA	100629041	100605836	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100606989_100607583_100607732_100608667_100608791_100609256_100609409_100610740_100610995_100628903
transcript_16253.nic	chr11	-	850	3	ISM	ENSMUSG00000019173.12	ENSMUST00000019317.12	1967	6	-38	3152	-38	337	5prime_fragment	FALSE	canonical	3	135	junction_2	8	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACCTCATTTCAGACCACT	NA	False	NA	NA	False	NA	NA	NA	100629079	100608988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_100609409_100610740_100610995_100628903
transcript_16256.nnic	chr11	-	830	3	NNC	ENSMUSG00000045471.5	novel	586	2	NA	NA	-721	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATGTTTCTGTGTGTCAA	NA	False	NA	NA	False	AATAAA	-26	NA	100654478	100652516	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_100652992_100653646_100653838_100654314
transcript_16259.known	chr11	-	2462	9	FSM	ENSMUSG00000017747.14	ENSMUST00000017891.14	2462	9	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_7	5.82961190818051	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAATGTATGTATTTTAT	NA	False	NA	NA	False	NA	NA	NA	100661783	100656857	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100657851_100658109_100658196_100658839_100658974_100659043_100659116_100659210_100659404_100659853_100660356_100660481_100660604_100660895_100661177_100661704
transcript_16265.known	chr11	-	2927	24	FSM	ENSMUSG00000004040.17	ENSMUST00000092671.12	2927	24	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_3	102.661666503989	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAATAAGAA	NA	False	NA	NA	False	TTTAAA	-3	NA	100830206	100779061	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100779587_100780303_100780417_100780711_100780755_100783902_100784113_100784490_100784631_100784716_100784812_100784989_100785043_100785526_100785663_100785889_100785989_100787148_100787233_100789276_100789325_100789433_100789528_100789619_100789650_100793562_100793623_100794247_100794341_100794429_100794589_100795732_100795885_100796029_100796125_100796418_100796501_100796658_100796755_100798816_100798916_100799485_100799631_100802059_100802211_100830081
transcript_16273.known	chr11	-	3491	2	FSM	ENSMUSG00000004044.10	ENSMUST00000060792.6	3491	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGTGAGGTTATATTGT	NA	False	NA	1	True	AATAAA	-19	NA	100861713	100847558	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100850152_100860815
transcript_16274.known	chr11	+	4008	22	FSM	ENSMUSG00000019302.17	ENSMUST00000044721.13	4008	22	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_19	48.1567734584863	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTCTCTGAGTGTG	NA	False	NA	17	True	AATAAA	-22	NA	100900277	100954545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917506_100917590_100918092_100918220_100920001_100920085_100921235_100921330_100924726_100924940_100927547_100927699_100928984_100929125_100929515_100929674_100930646_100930738_100933775_100933895_100934616_100934834_100935341_100935450_100939243_100939352_100940284_100940303_100945851_100945970_100946259_100946432_100953137
transcript_16275.known	chr11	+	2716	21	FSM	ENSMUSG00000019302.17	ENSMUST00000103110.10	2716	21	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_5	41.6171839508634	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGAGCAGCTCCCCTGCC	NA	False	NA	NA	False	NA	NA	NA	100900277	100953250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917485_100917590_100918092_100918220_100920001_100920085_100921235_100921330_100924726_100924940_100927547_100927699_100928984_100929125_100929515_100929674_100930646_100930738_100933775_100933895_100934616_100934834_100935341_100935450_100939243_100939352_100945851_100945970_100946259_100946432_100953137
transcript_16276.nic	chr11	+	2396	17	ISM	ENSMUSG00000019302.17	ENSMUST00000044721.13	4008	22	-9	18893	-9	0	5prime_fragment	FALSE	canonical	3	143	junction_12	25.0571222409917	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCCTGGTCGTGATTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	100900268	100935652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917506_100917590_100918092_100918220_100920001_100920085_100921235_100921330_100924726_100924940_100927547_100927699_100928984_100929125_100929515_100929674_100930646_100930738_100933775_100933895_100934616_100934834_100935341
transcript_16279.nic	chr11	+	947	7	ISM	ENSMUSG00000019302.17	ENSMUST00000103110.10	2716	21	-9	34924	-9	0	5prime_fragment	FALSE	canonical	3	25	junction_5	68.6547319725467	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTGAAAGCTTACTCCCC	NA	False	NA	NA	False	ATTAAA	-20	NA	100900268	100918326	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917485_100917590_100918092
transcript_16280.known	chr11	+	4162	16	FSM	ENSMUSG00000019302.17	ENSMUST00000154896.8	4162	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	51.1891481555309	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTTTCCTGGTCGTGATT	NA	False	NA	NA	False	AATAAA	-13	NA	100900277	100935649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917506_100917590_100918092_100920085_100921235_100921330_100924726_100924940_100927547_100927699_100928984_100929125_100929515_100929674_100930646_100930738_100933775_100933895_100934616_100934834_100935345
transcript_16282.known	chr11	+	828	5	FSM	ENSMUSG00000019302.17	ENSMUST00000151554.2	828	5	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_3	14.517231140958	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGGTGCGGTGGTGGTGGG	NA	False	NA	NA	False	NA	NA	NA	100900277	100912236	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879
transcript_16283.known	chr11	+	384	3	FSM	ENSMUSG00000019302.17	ENSMUST00000134919.2	384	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	92.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTGAAAGCTTACTCCCC	NA	False	NA	NA	False	ATTAAA	-20	NA	100911962	100918326	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_100912009_100917485_100917590_100918092
transcript_16284.known	chr11	+	504	2	FSM	ENSMUSG00000019302.17	ENSMUST00000127810.2	504	2	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCCTGGTCGTGATTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	100934640	100935652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_100934834_100935341
transcript_16285.known	chr11	+	2560	6	FSM	ENSMUSG00000001751.10	ENSMUST00000001802.10	2560	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	1.93907194296653	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTGGACGTTGCTGGCAT	NA	False	NA	23	True	AATAAA	-33	NA	100960837	100968498	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_100961328_100961905_100962054_100962721_100962869_100963042_100963129_100964672_100964930_100967066
transcript_16286.known	chr11	+	1339	6	FSM	ENSMUSG00000019301.6	ENSMUST00000019445.6	1339	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	8.26075057122535	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTGGAGGGGGACACAT	NA	False	NA	NA	False	NA	NA	NA	100969236	100971353	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_100969365_100969451_100969620_100969754_100969935_100970014_100970109_100970485_100970661_100970759
transcript_16291.known	chr11	+	2138	10	FSM	ENSMUSG00000001755.13	ENSMUST00000001806.10	2138	10	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	26.2908705931015	917	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGGTTTTCTGTT	3511	False	NA	25	True	ATTAAA	-16	NA	100973390	100977445	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_100973517_100973824_100974533_100975141_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073
transcript_16297.nic	chr11	+	1426	9	NIC	ENSMUSG00000001755.13	novel	2138	10	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	48.4418143239908	853	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGGTTTTCTGTT	3515	False	NA	25	True	ATTAAA	-16	NA	100973394	100977445	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_100973517_100975141_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073
transcript_16302.known	chr11	+	2386	9	FSM	ENSMUSG00000001755.13	ENSMUST00000107308.4	2386	9	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_1	20.9388992069784	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGGTTTTCTGTT	3571	False	NA	25	True	ATTAAA	-16	NA	100973450	100977445	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_100974533_100975141_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073
transcript_16306.known	chr11	+	1826	8	FSM	ENSMUSG00000017801.16	ENSMUST00000107302.8	1826	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	91.1912097446562	593	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTGTTTTAAGTCCTTGT	8223	False	NA	18	True	AATAAA	-22	NA	100978102	100983033	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_100978194_100978579_100978617_100979061_100979152_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
transcript_16309.known	chr11	+	679	8	FSM	ENSMUSG00000017801.16	ENSMUST00000149411.8	679	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	90.5047072854021	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCGGTGTCCTTCATCAGTT	8236	False	NA	NA	False	NA	NA	NA	100978115	100981952	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_100978141_100978579_100978617_100979061_100979152_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
transcript_16311.known	chr11	+	1965	8	FSM	ENSMUSG00000017801.16	ENSMUST00000017945.15	1965	8	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_1	39.4052726193346	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTGTTTTAAGTCCTTGT	8246	False	NA	18	True	AATAAA	-22	NA	100978125	100983033	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_100978356_100978579_100978617_100979061_100979152_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
transcript_16315.known	chr11	+	1736	7	FSM	ENSMUSG00000017801.16	ENSMUST00000107303.10	1736	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	122.609701446863	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTGTTTTAAGTCCTTGT	8223	False	NA	18	True	AATAAA	-22	NA	100978102	100983033	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_100978194_100978579_100978617_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
transcript_16327.known	chr11	-	1291	8	FSM	ENSMUSG00000019303.15	ENSMUST00000019447.15	1291	8	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_7	41.1021624139417	1107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCCTTTGCCTTTGGGA	NA	False	NA	NA	False	GATAAA	-14	NA	100986262	100982648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100983283_100983357_100983418_100983549_100983604_100983688_100983835_100984506_100984619_100985761_100985852_100985983_100986085_100986168
transcript_16328.known	chr11	+	618	2	FSM	ENSMUSG00000017801.16	ENSMUST00000143344.2	618	2	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGTTTGCCTCTGCTTGGTC	NA	False	NA	6	True	NA	NA	NA	100980487	100982344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_100980696_100981934
transcript_16329.known	chr11	-	1030	7	FSM	ENSMUSG00000019303.15	ENSMUST00000126386.8	1030	7	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_2	24.7571538482651	632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCCAGATATCAAACCTGG	NA	False	NA	4	True	TATAAA	-30	NA	100986226	100982957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100983283_100983357_100983418_100983549_100983604_100983688_100983835_100984506_100984619_100985761_100985852_100985983
transcript_16330.known	chr11	-	3165	9	FSM	ENSMUSG00000017802.15	ENSMUST00000017946.6	3165	9	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_5	11.6162601554889	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTTCGTTGTGTACT	9795	False	NA	1	True	AATAAA	-29	NA	101010719	100987338	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_100989447_100989833_100989967_100990498_100990582_100991747_100991886_100992831_100992917_100993708_100993836_100994715_100994747_100997132_100997240_101010366
transcript_16336.known	chr11	+	1802	11	FSM	ENSMUSG00000035198.10	ENSMUST00000043680.9	1802	11	0	0	0	0	multi-exon	TRUE	canonical	3	373	junction_8	104.461715475096	1480	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCCCCGGTCTCTGAA	1230	False	NA	16	True	AATAAA	-19	NA	101010763	101017245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101011069_101011372_101011486_101011656_101011825_101013498_101013568_101014239_101014320_101014738_101014866_101015058_101015146_101015248_101015399_101015795_101015949_101016028_101016191_101016857
transcript_16337.known	chr11	+	1754	11	FSM	ENSMUSG00000045007.10	ENSMUST00000043654.10	1754	11	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_5	90.3044295702044	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGCTTTGTTTGTGACT	1651	False	NA	NA	False	AATAAA	-22	NA	101046732	101052613	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101046995_101047273_101047387_101047578_101047747_101048277_101048347_101048608_101048689_101049834_101049962_101050882_101050970_101051072_101051223_101051619_101051773_101051852_101052015_101052230
transcript_16340.nic	chr11	-	558	2	ISM	ENSMUSG00000035172.16	ENSMUST00000139200.8	1410	6	1943	0	1647	0	3prime_fragment	FALSE	canonical	3	92	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTCCTGTGGGAGTGTTG	8365	False	NA	3	True	AAGAAA	-22	NA	101054503	101053504	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_101053891_101054331
transcript_16342.known	chr11	-	3636	15	FSM	ENSMUSG00000006920.15	ENSMUST00000100417.3	3636	15	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_13	38.227634517667	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATATTAGCTGCAGTTTAT	2642	False	NA	NA	False	GATAAA	-21	NA	101117252	101088214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_101090210_101090771_101090813_101091661_101091754_101094080_101094278_101094586_101094768_101098163_101098256_101098947_101099112_101100205_101100309_101101372_101101550_101104549_101104671_101106008_101106129_101107820_101107950_101108068_101108195_101109479_101109547_101117221
transcript_16351.known	chr11	+	1178	4	FSM	ENSMUSG00000001240.14	ENSMUST00000129680.8	1178	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	6.16441400296898	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGCCTTCCTAGTGGGGT	NA	False	NA	17	True	AATAAA	-18	NA	101136853	101139076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101137399_101137880_101137971_101138411_101138515_101138636
transcript_16352.known	chr11	+	899	3	FSM	ENSMUSG00000001240.14	ENSMUST00000122006.8	899	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	3	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGCCTTCCTAGTGGGGT	NA	False	NA	17	True	AATAAA	-18	NA	101137254	101139076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101137399_101137880_101137971_101138411
transcript_16353.known	chr11	+	615	6	FSM	ENSMUSG00000078656.12	ENSMUST00000007533.15	615	6	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_5	475.771541813926	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTCTGTGACTCTTTA	NA	False	NA	1	True	AGTAAA	-17	NA	101144532	101148875	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101144634_101144856_101145003_101145768_101145823_101146834_101146924_101147703_101147780_101148726
transcript_16354.known	chr11	+	1106	6	FSM	ENSMUSG00000078656.12	ENSMUST00000042477.13	1106	6	0	0	0	0	multi-exon	FALSE	canonical	3	1136	junction_3	45.4682306671372	7441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGCCTGTTACTACTGCTG	NA	False	NA	20	True	ATTAAA	-17	NA	101144532	101150375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101144634_101144856_101145003_101145768_101145823_101146834_101146924_101147703_101147780_101149735
transcript_16355.known	chr11	+	1220	6	FSM	ENSMUSG00000078656.12	ENSMUST00000100414.12	1220	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_5	486.921595331322	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTCGGCCTGTTACTACT	NA	False	NA	16	True	ATTAAA	-13	NA	101144554	101150371	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101144634_101144856_101145003_101145768_101145823_101146834_101146924_101147703_101147780_101149595
transcript_16356.known	chr11	+	876	6	FSM	ENSMUSG00000078656.12	ENSMUST00000107280.11	876	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	474.329252734849	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACCCACCTACATGCGCC	NA	False	NA	NA	False	TATAAA	-35	NA	101144560	101150149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101144634_101144856_101145003_101145744_101145823_101146834_101146924_101147703_101147780_101149735
transcript_16358.known	chr11	+	2335	7	FSM	ENSMUSG00000078653.5	ENSMUST00000103107.5	2335	7	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_6	3.09120616516523	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTGGTATTGTAAACATG	NA	False	NA	9	True	AATAAA	-14	NA	101169921	101179527	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101170307_101174217_101174294_101174546_101174719_101175585_101175749_101176490_101176636_101177679_101177777_101178230
transcript_16362.known	chr11	-	886	2	FSM	ENSMUSG00000017188.4	ENSMUST00000017332.4	886	2	0	0	0	0	multi-exon	FALSE	canonical	3	1870	junction_1	0	1794	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAGCTAGTGTGTGGGGG	5502	False	NA	-5	True	AATAAA	-20	NA	101169940	101168793	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_101169279_101169539
transcript_16363.known	chr11	-	291	2	FSM	ENSMUSG00000017188.4	ENSMUST00000168089.2	291	2	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGGACCATCTTCAAACT	5673	False	NA	NA	False	NA	NA	NA	101169769	101169163	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_101169225_101169539
transcript_16364.known	chr11	-	3476	10	FSM	ENSMUSG00000035086.14	ENSMUST00000139997.9	3476	10	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_6	43.6603048800878	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGGTACGCCTGTATG	NA	False	NA	-2	True	AATAAA	-25	NA	101193078	101179087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101185991_101186120_101186258_101186359_101187143_101189834_101189903_101192553_101192683_101192957
transcript_16365.known	chr11	-	2662	11	FSM	ENSMUSG00000035086.14	ENSMUST00000122817.8	2662	11	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_7	42.6812605249658	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGGTACGCCTGTATG	NA	False	NA	-2	True	AATAAA	-25	NA	101193086	101179087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101184974_101185795_101185991_101186120_101186258_101186359_101187143_101189834_101189903_101192553_101192683_101192957
transcript_16366.known	chr11	-	2123	12	FSM	ENSMUSG00000035086.14	ENSMUST00000041403.12	2123	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	185.08889979263	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGGTACGCCTGTATG	NA	False	NA	-2	True	AATAAA	-25	NA	101193112	101179087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101184974_101185791_101185991_101186120_101186258_101186359_101186451_101187019_101187143_101189834_101189903_101192553_101192683_101192957
transcript_16367.known	chr11	-	725	4	FSM	ENSMUSG00000035086.14	ENSMUST00000170502.2	725	4	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_1	27.6445694888204	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCCTTCCTTTTTGCTGT	NA	False	NA	NA	False	ATTAAA	-16	NA	101193075	101186732	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_101187143_101189834_101189903_101192553_101192683_101192957
transcript_16377.known	chr11	+	2664	11	FSM	ENSMUSG00000078652.10	ENSMUST00000019470.14	2664	11	0	0	0	0	multi-exon	FALSE	canonical	3	1173	junction_6	119.560068584791	1260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTGGTGCTGTACTCTG	NA	False	NA	34	True	ATTAAA	-35	NA	101207038	101214363	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101207315_101208006_101208040_101208154_101208218_101208448_101208554_101210281_101210331_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211640_101212617
transcript_1638.known	chr1	-	1122	6	FSM	ENSMUSG00000026049.12	ENSMUST00000156392.8	1122	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	166.814148081031	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGGTGCCTTTGTTTTAC	NA	False	NA	-3	True	ATTAAA	-17	NA	44141598	44125775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139082_44141487
transcript_16388.nnic	chr11	+	2570	10	NIC	ENSMUSG00000078652.10	novel	2664	11	NA	NA	-11	0	combination_of_known_splicesites	FALSE	canonical	3	51	junction_3	427.085471539363	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTGGTGCTGTACTCTG	NA	False	NA	34	True	ATTAAA	-35	NA	101207027	101214363	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_101207315_101208006_101208040_101208154_101208218_101210281_101210331_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211640_101212617
transcript_1639.known	chr1	-	960	6	FSM	ENSMUSG00000026049.12	ENSMUST00000150911.8	960	6	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_5	82.045353311446	1765	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACGGTTGGTTAATTTGA	NA	False	NA	NA	False	AATAAA	-1	NA	44141601	44126020	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44141487
transcript_16396.known	chr11	+	698	7	FSM	ENSMUSG00000078652.10	ENSMUST00000142640.8	698	7	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	601.360332911974	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGAGAAATGTAACACGGTGA	NA	False	NA	NA	False	AGTAAA	-22	NA	101207038	101210834	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101207315_101207846_101207922_101208006_101208040_101208154_101208218_101208448_101208554_101210281_101210331_101210737
transcript_16398.known	chr11	-	1516	12	FSM	ENSMUSG00000075528.14	ENSMUST00000070395.9	1516	12	0	0	0	0	multi-exon	FALSE	canonical	3	448	junction_11	68.1448384565145	2983	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTTGTATACTGCCATT	NA	False	NA	-21	True	AGTAAA	-16	NA	101308441	101297664	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_101297851_101298956_101299052_101300478_101300534_101300939_101301032_101301179_101301247_101301586_101301718_101301908_101302026_101302119_101302277_101302765_101302824_101304762_101304923_101307928_101308061_101308175
transcript_16402.known	chr11	-	853	7	FSM	ENSMUSG00000097487.8	ENSMUST00000107252.9	853	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	3.45205252953466	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCCTTCCCTTCCTGTA	NA	False	NA	-10	True	AATAAA	-14	NA	101315495	101309637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_101310013_101310500_101310555_101312690_101312781_101314605_101314705_101314802_101314870_101314980_101315095_101315441
transcript_16404.known	chr11	-	1463	6	FSM	ENSMUSG00000097487.8	ENSMUST00000103102.10	1463	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	4.22374241638857	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCCTTCCCTTCCTGTA	NA	False	NA	-10	True	AATAAA	-14	NA	101316159	101309637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_101310013_101312690_101312781_101314605_101314705_101314802_101314870_101314980_101315095_101315441
transcript_16407.known	chr11	-	544	2	FSM	ENSMUSG00000075528.14	ENSMUST00000125472.2	544	2	0	0	0	0	multi-exon	FALSE	canonical	3	448	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTGAAGGGAAGGGATGAG	NA	False	NA	NA	False	NA	NA	NA	101308232	101307573	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_101308061_101308175
transcript_16408.known	chr11	+	3223	5	FSM	ENSMUSG00000035007.6	ENSMUST00000040561.6	3223	5	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_3	4.27200187265877	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCTCTGCACTCTCTAAG	NA	False	NA	35	True	AATAAA	-39	NA	101315910	101326499	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101316437_101320277_101320437_101322173_101322373_101322907_101323025_101324277
transcript_16444.known	chr11	+	614	5	FSM	ENSMUSG00000063316.14	ENSMUST00000077856.13	614	5	0	0	0	0	multi-exon	FALSE	canonical	3	8302	junction_4	1985.8892844265	107378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGTGTCTGCCTATTGC	2241	False	NA	62	True	ATTAAA	-18	NA	101333123	101336355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101333283_101333548_101333632_101334326_101334497_101336045_101336157_101336264
transcript_16445.known	chr11	+	732	4	FSM	ENSMUSG00000063316.14	ENSMUST00000107249.8	732	4	0	0	0	0	multi-exon	FALSE	canonical	3	8302	junction_3	2031.83972465022	12567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGTGTCTGCCTATTGC	2389	False	NA	62	True	ATTAAA	-18	NA	101333271	101336355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101333632_101334326_101334497_101336045_101336157_101336264
transcript_16446.known	chr11	+	1362	7	FSM	ENSMUSG00000010358.14	ENSMUST00000010502.13	1362	7	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_3	8.33499983336666	281	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACCCATTCTCCAGCAAC	981	False	NA	NA	False	NA	NA	NA	101339232	101349524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101339449_101347391_101347491_101348015_101348164_101348241_101348349_101348445_101348633_101348716_101348824_101349026
transcript_16448.known	chr11	+	1578	6	FSM	ENSMUSG00000001313.13	ENSMUST00000153185.8	1578	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	71.7568115233669	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGGACTTAGTTTTGTT	7809	False	NA	21	True	AATAAA	-21	NA	101355824	101362679	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101355971_101356456_101356760_101359758_101359847_101360838_101360949_101361543_101361679_101361883
transcript_16450.known	chr11	-	2766	6	FSM	ENSMUSG00000034993.8	ENSMUST00000040430.8	2766	6	0	0	0	0	multi-exon	TRUE	canonical	3	320	junction_5	13.7462722219517	764	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTGACCAGATGTTGTAT	NA	False	NA	-11	True	AATAAA	-15	NA	101357056	101349570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_101351103_101351202_101351445_101353023_101353114_101353215_101353387_101353734_101353943_101356533
transcript_16451.nnic	chr11	+	1314	5	NIC	ENSMUSG00000001313.13	novel	1578	6	NA	NA	-39	0	combination_of_known_splicesites	FALSE	canonical	3	4	junction_1	68.3245929369506	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGGACTTAGTTTTGTT	7770	False	NA	21	True	AATAAA	-21	NA	101355785	101362679	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_101355971_101359758_101359847_101360838_101360949_101361543_101361679_101361883
transcript_16453.known	chr11	+	1394	5	FSM	ENSMUSG00000001313.13	ENSMUST00000001347.7	1394	5	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	23.8051990119806	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGGACTTAGTTTTGTT	NA	False	NA	21	True	AATAAA	-21	NA	101359000	101362679	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101359266_101359758_101359847_101360838_101360949_101361543_101361679_101361883
transcript_16457.nic	chr11	-	747	3	ISM	ENSMUSG00000017146.13	ENSMUST00000142086.3	1917	9	-49	14116	-49	-7540	5prime_fragment	FALSE	canonical	3	286	junction_2	14	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACATAGCCATGTTGTACA	NA	False	NA	NA	False	NA	NA	NA	101442830	101430448	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_101430861_101439840_101439940_101442594
transcript_16458.known	chr11	-	6572	23	FSM	ENSMUSG00000017146.13	ENSMUST00000017290.11	6572	23	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_5	36.2819537137853	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTGACAAAGAATGACTGA	NA	False	NA	-11	True	AATAAA	-15	NA	101442705	101379589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_101380739_101382684_101382746_101383006_101383081_101384377_101384433_101388759_101388841_101392817_101392859_101393306_101393385_101396142_101396231_101398775_101399057_101400746_101400926_101403545_101403676_101408096_101408269_101413257_101413329_101414150_101417466_101418826_101418904_101420616_101420663_101421817_101421921_101422845_101422986_101424764_101424854_101426353_101426432_101430806_101430861_101439840_101439940_101442594
transcript_16459.known	chr11	+	4789	24	FSM	ENSMUSG00000017119.21	ENSMUST00000103099.8	4789	24	0	0	0	0	multi-exon	TRUE	canonical	3	23	junction_1	55.4078195296328	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCTGTTTATTGTTTAA	269	False	NA	21	True	AATAAA	-24	NA	101442974	101472777	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101443412_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463287_101463399_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101468757_101468864_101471410
transcript_16460.known	chr11	+	4654	24	FSM	ENSMUSG00000017119.21	ENSMUST00000103098.9	4654	24	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_17	38.3552196362625	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCTGTTTATTGTTTAA	774	False	NA	21	True	AATAAA	-24	NA	101443479	101472777	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101443782_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463287_101463399_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101468757_101468864_101471410
transcript_16461.known	chr11	+	4339	23	FSM	ENSMUSG00000017119.21	ENSMUST00000107213.8	4339	23	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_16	37.5030852725303	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCTGTTTATTGTTTAA	978	False	NA	21	True	AATAAA	-24	NA	101443683	101472777	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101443782_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101468757_101468864_101471410
transcript_16463.known	chr11	+	2304	9	FSM	ENSMUSG00000034947.14	ENSMUST00000039581.14	2304	9	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	4.99843725578305	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAAGGGGCATTCCTGGA	3688	False	NA	NA	False	AATAAA	-17	NA	101473067	101482614	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101473152_101473450_101473531_101474383_101474611_101475271_101475336_101477064_101477219_101479678_101479820_101479923_101479968_101480760_101480815_101481158
transcript_16466.known	chr11	+	191	1	FSM	ENSMUSG00000118859.1	ENSMUST00000239995.1	191	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGGTTCCTAATGTTGGT	NA	False	NA	NA	False	NA	NA	NA	101495675	101495866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101495700_101495900
transcript_16468.nnic	chr11	+	1003	4	NNC	ENSMUSG00000086617.2	novel	472	3	NA	NA	-43	682	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	8.04155872120988	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAATGCCTGTGGGGTTTT	NA	False	NA	7	True	AAAACA	-27	NA	101501482	101507464	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_101501736_101501917_101502004_101506606_101506824_101507017
transcript_16470.known	chr11	+	182	2	FSM	ENSMUSG00000086617.2	ENSMUST00000131042.2	182	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTAGGTGCTGTTGGTATG	NA	False	NA	NA	False	NA	NA	NA	101501439	101502001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101501538_101501917
transcript_16488.known	chr11	+	191	1	FSM	ENSMUSG00000119776.1	ENSMUST00000240535.1	191	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGGAGTAAAGTTGGTTT	NA	False	NA	NA	False	NA	NA	NA	101518191	101518382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101518200_101518400
transcript_16489.known	chr11	+	1124	7	FSM	ENSMUSG00000010362.10	ENSMUST00000010506.10	1124	7	0	0	0	0	multi-exon	FALSE	canonical	3	866	junction_2	120.614284210269	8042	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTGTGTGGTTTGGGTCCC	NA	False	NA	29	True	AATAAA	-28	NA	101518767	101526926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101518891_101519098_101519279_101521063_101521187_101521645_101521806_101524627_101524727_101525613_101525700_101526573
transcript_16490.known	chr11	+	191	1	FSM	ENSMUSG00000118718.1	ENSMUST00000240145.1	191	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGGGAATAAGAATGGTCA	NA	False	NA	NA	False	NA	NA	NA	101532573	101532764	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101532600_101532800
transcript_16491.known	chr11	-	191	1	FSM	ENSMUSG00000119892.1	ENSMUST00000240379.1	191	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGGGAATAAGAATGGTCA	NA	False	NA	NA	False	NA	NA	NA	101536756	101536565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_101536600_101536800
transcript_16492.known	chr11	+	191	1	FSM	ENSMUSG00000118837.1	ENSMUST00000240231.1	191	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGGGAATAAGAGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	101549063	101549254	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101549100_101549300
transcript_16493.known	chr11	+	1382	2	FSM	ENSMUSG00000034936.3	ENSMUST00000039388.3	1382	2	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	0	229	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTTTGATCTGGTAACT	2550	False	NA	NA	False	ATTAAA	-18	NA	101556366	101558658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101556464_101557373
transcript_16494.known	chr11	+	4325	23	FSM	ENSMUSG00000034931.16	ENSMUST00000039152.14	4325	23	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_7	24.6553097226675	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTTTATTATGACTTT	NA	False	NA	26	True	NA	NA	NA	101623775	101658184	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101624015_101624981_101625068_101626203_101626277_101626634_101626721_101628482_101628593_101628955_101629388_101630529_101630675_101631488_101631693_101632326_101632415_101633901_101634000_101635931_101636080_101640710_101640893_101641703_101641899_101642836_101643023_101643110_101643322_101643973_101644156_101645557_101645699_101648418_101648575_101653034_101653173_101654722_101654852_101654970_101655168_101655603_101655784_101657465
transcript_16495.nic	chr11	+	659	5	ISM	ENSMUSG00000034931.16	ENSMUST00000039152.14	4325	23	-64	29591	-33	2071	5prime_fragment	FALSE	canonical	3	176	junction_3	12.0830459735946	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCCTTATGTCCTGTTC	NA	False	NA	NA	False	NA	NA	NA	101623711	101628593	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_101624015_101624981_101625068_101626203_101626277_101626634_101626721_101628482
transcript_16496.nic	chr11	+	496	4	ISM	ENSMUSG00000034931.16	ENSMUST00000039152.14	4325	23	-64	31516	-33	146	5prime_fragment	FALSE	canonical	3	176	junction_3	11.4309521329882	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGAGGGAACTCTTCCCCG	NA	False	NA	NA	False	AAAAAG	-5	NA	101623711	101626668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_101624015_101624981_101625068_101626203_101626277_101626634
transcript_16497.nic	chr11	+	728	4	ISM	ENSMUSG00000034931.16	ENSMUST00000039152.14	4325	23	67	31153	-12	509	5prime_fragment	FALSE	canonical	3	176	junction_3	11.4309521329882	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAATATGAAAGGGTC	NA	False	NA	NA	False	NA	NA	NA	101623842	101627031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_101624015_101624981_101625068_101626203_101626277_101626634
transcript_16498.known	chr11	+	675	3	FSM	ENSMUSG00000034931.16	ENSMUST00000125409.2	675	3	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_1	2	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTTGTTTGTTTTTTGCA	NA	False	NA	NA	False	NA	NA	NA	101623744	101626522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101624015_101624981_101625068_101626203
transcript_16500.known	chr11	-	2377	13	FSM	ENSMUSG00000017724.15	ENSMUST00000107176.8	2377	13	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_11	4.75803414120673	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTATTTGCTCTTTGCT	NA	False	NA	-6	True	AATAAA	-19	NA	101676197	101660572	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_101661417_101661794_101661897_101662153_101662327_101662514_101662584_101662706_101662782_101664434_101664704_101664906_101665054_101666143_101666271_101667918_101667973_101674792_101674841_101675055_101675150_101675342_101675454_101675933
transcript_16505.known	chr11	+	399	1	FSM	ENSMUSG00000082171.2	ENSMUST00000120378.2	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATATTTTTGTTTTGTCAT	NA	False	NA	NA	False	AATACA	-45	NA	101830326	101830725	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101830300_101830700
transcript_16506.known	chr11	+	1184	4	FSM	ENSMUSG00000071818.10	ENSMUST00000123249.2	1184	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTGGACCTTGGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	101843246	101851399	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_101843306_101846520_101846691_101846876_101846928_101850495
transcript_16507.nic	chr11	-	800	4	NIC	ENSMUSG00000003518.14	novel	440	3	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	5.31245915016974	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTCACGTTCTCATTATT	NA	False	NA	NA	False	NA	NA	NA	101875642	101864294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_101864469_101865571_101865766_101872442_101872670_101875437
transcript_16508.known	chr11	-	4212	3	FSM	ENSMUSG00000003518.14	ENSMUST00000003612.13	4212	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	3.5	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACGTCTGTTTTGTGTTTCC	NA	False	NA	NA	False	AATAAA	-17	NA	101875625	101861968	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_101865766_101872442_101872670_101875437
transcript_16510.known	chr11	-	3577	12	FSM	ENSMUSG00000017314.13	ENSMUST00000100398.5	3577	12	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_2	3.33773813648833	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGACCACGGCCTCTGAT	674	False	NA	NA	False	NA	NA	NA	101973310	101948349	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_101950320_101951246_101951376_101951592_101951796_101952321_101952484_101952726_101952796_101952880_101952987_101953076_101953209_101954013_101954242_101955119_101955270_101955394_101955548_101971478_101971598_101973154
transcript_16511.known	chr11	-	555	4	FSM	ENSMUSG00000017311.16	ENSMUST00000017455.15	555	4	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.471404520791032	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCCGTGTGTTTTTTCCAT	NA	False	NA	NA	False	AATAAA	-20	NA	101998658	101997501	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_101997693_101997798_101997883_101997990_101998179_101998566
transcript_16512.known	chr11	+	569	1	FSM	ENSMUSG00000082045.5	ENSMUST00000120901.2	569	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCCACTTCTTGGCAAAA	NA	False	NA	NA	False	NA	NA	NA	102014897	102015466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_102014900_102015500
transcript_16513.known	chr11	+	2028	7	FSM	ENSMUSG00000048217.12	ENSMUST00000055409.6	2028	7	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	3.13138237134266	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTTGTCTCAAAAACCATC	NA	False	NA	12	True	NA	NA	NA	102036374	102040303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_102036818_102037315_102037591_102037688_102037903_102038189_102038371_102038635_102038808_102038917_102039101_102039743
transcript_16517.nic	chr11	-	1647	4	NIC	ENSMUSG00000020921.7	novel	1574	4	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_3	131.230924539742	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTTTGCTTCTGTCT	4456	False	NA	0	True	AATAAA	-16	NA	102047239	102043371	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_102044421_102045382_102045530_102046549_102046731_102046969
transcript_16518.known	chr11	-	1574	4	FSM	ENSMUSG00000020921.7	ENSMUST00000021296.7	1574	4	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_3	22.1710521977545	1056	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTTTGCTTCTGTCT	4465	False	NA	0	True	AATAAA	-16	NA	102047230	102043371	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_102044421_102045382_102045530_102046549_102046731_102047033
transcript_16523.known	chr11	-	2256	5	FSM	ENSMUSG00000020922.12	ENSMUST00000021297.6	2256	5	0	0	0	0	multi-exon	FALSE	canonical	3	919	junction_1	21.856063231973	1087	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTCTCAGGTTTGTGC	6356	False	NA	-1	True	AATAAA	-23	NA	102076122	102053322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_102054994_102056185_102056313_102057912_102058023_102073683_102073818_102075908
transcript_16528.known	chr11	+	1404	7	FSM	ENSMUSG00000034793.16	ENSMUST00000070334.10	1404	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	57.3044985629885	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTTCTTGTCTGTGCTC	NA	False	NA	5	True	AATAAA	-19	NA	102080445	102084907	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_102080479_102080696_102080970_102082860_102082968_102083298_102083390_102083574_102083694_102083910_102084053_102084268
transcript_1653.known	chr1	-	2031	5	FSM	ENSMUSG00000026047.14	ENSMUST00000149665.2	2031	5	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_1	26.3284541893367	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAAAATAAGAAATTAGT	NA	False	NA	NA	False	AAAAAG	-3	NA	44157925	44151242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_44152336_44153600_44153679_44153853_44154060_44156197_44156404_44157477
transcript_16530.known	chr11	+	1573	6	FSM	ENSMUSG00000034793.16	ENSMUST00000078975.8	1573	6	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_4	4.31740662898458	859	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTTCTTGTCTGTGCTC	NA	False	NA	5	True	AATAAA	-19	NA	102080494	102084907	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_102080970_102082860_102082968_102083298_102083390_102083574_102083694_102083910_102084053_102084268
transcript_16533.known	chr11	-	3872	28	FSM	ENSMUSG00000008855.18	ENSMUST00000124077.8	3872	28	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_25	66.6396241448948	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAACGTGTGCCGTGTGGG	NA	False	NA	-5	True	ATTAAA	-20	NA	102120965	102086574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_102086695_102086777_102086944_102087063_102087149_102087364_102087499_102087884_102088004_102088164_102088263_102088491_102088612_102089622_102089711_102089830_102089887_102090191_102090300_102090461_102090512_102090794_102090916_102091225_102091360_102092058_102092231_102092878_102093161_102093369_102093582_102095256_102095480_102095657_102095790_102096109_102096223_102096310_102096458_102096615_102096747_102097247_102097363_102097455_102097601_102097732_102097993_102104750_102104863_102109241_102109314_102115559_102115782_102120830
transcript_16538.known	chr11	+	2547	10	FSM	ENSMUSG00000034773.17	ENSMUST00000100392.5	2547	10	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_3	21.1502561056204	216	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCGTCCCACACCTCCT	NA	False	NA	15	True	AATAAA	-22	NA	102139707	102156013	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_102139919_102141504_102141556_102145779_102146848_102148712_102148797_102150145_102150287_102150659_102150769_102150904_102150991_102151316_102151443_102153008_102153127_102155460
transcript_1654.known	chr1	-	399	4	FSM	ENSMUSG00000026049.12	ENSMUST00000129702.2	399	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	194.64326343339	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTAGTAAAATTCATTGGA	NA	False	NA	NA	False	NA	NA	NA	44141593	44126188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44141487
transcript_16542.known	chr11	+	2843	5	FSM	ENSMUSG00000034768.5	ENSMUST00000036467.5	2843	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	21.6722749151998	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTGGACATTGTAGGGTT	NA	False	NA	NA	False	AATAAA	-21	NA	102159568	102170288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_102159950_102163312_102163581_102167204_102167698_102168003_102168118_102168701
transcript_16545.known	chr11	+	1939	4	FSM	ENSMUSG00000034757.16	ENSMUST00000036376.13	1939	4	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	22.5437845585479	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGCCTCTTTGTGACTGC	NA	False	NA	16	True	AATAAA	-18	NA	102175756	102180063	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_102175915_102176489_102176545_102178133_102178698_102178901
transcript_16547.known	chr11	+	1876	3	FSM	ENSMUSG00000034757.16	ENSMUST00000100387.11	1876	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	44	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGCCTCTTTGTGACTGC	NA	False	NA	16	True	AATAAA	-18	NA	102175764	102180063	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_102175915_102178133_102178698_102178901
transcript_16548.known	chr11	+	2249	3	FSM	ENSMUSG00000034757.16	ENSMUST00000156326.2	2249	3	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	18.5	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGCCTCTTTGTGACTGC	NA	False	NA	16	True	AATAAA	-18	NA	102176021	102180063	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_102176545_102178133_102178698_102178901
transcript_16549.known	chr11	-	2759	21	FSM	ENSMUSG00000020923.18	ENSMUST00000107123.10	2759	21	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_20	173.298954122637	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGGGTGGGAGAGAGTCT	8206	False	NA	NA	False	NA	NA	NA	102208461	102197123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102208407
transcript_16550.known	chr11	-	4692	21	FSM	ENSMUSG00000020923.18	ENSMUST00000174302.8	4692	21	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_20	166.063624855054	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCGTCTGGTCACTGGAA	9007	False	NA	34	True	AATAAA	-20	NA	102209922	102195385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102209673
transcript_16551.known	chr11	-	3286	20	FSM	ENSMUSG00000020923.18	ENSMUST00000079589.11	3286	20	0	0	0	0	multi-exon	FALSE	canonical	3	503	junction_14	97.0817686596932	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGGTCTA	9161	False	NA	60	True	NA	NA	NA	102207506	102196749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174
transcript_16558.known	chr11	-	1062	4	FSM	ENSMUSG00000020923.18	ENSMUST00000128016.2	1062	4	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_1	31.0161248385416	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGCAGCCATTCTCCTA	9136	False	NA	NA	False	NA	NA	NA	102207531	102204434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_102204880_102204964_102205049_102205689_102205866_102207174
transcript_16559.known	chr11	+	1822	11	FSM	ENSMUSG00000006575.15	ENSMUST00000107103.8	1822	11	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	76.5477628673758	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTGGGGAGACAGAGACAT	7409	False	NA	11	True	NA	NA	NA	102284228	102292580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_102284609_102288396_102288513_102288925_102289060_102289202_102289289_102290020_102290111_102290208_102290290_102290440_102290607_102290713_102290872_102291486_102291625_102291719_102291827_102292214
transcript_16560.known	chr11	+	2046	11	FSM	ENSMUSG00000006575.15	ENSMUST00000006750.8	2046	11	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_7	30.0134969638661	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTTCATCTGTTGGAGA	7409	False	NA	14	True	AATAAA	-16	NA	102284228	102293381	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_102284609_102288396_102288513_102288910_102289060_102289202_102289289_102290020_102290111_102290208_102290290_102290440_102290607_102290713_102290872_102291486_102291625_102291719_102291827_102292806
transcript_16580.known	chr11	-	1685	12	FSM	ENSMUSG00000018677.10	ENSMUST00000018821.9	1685	12	0	0	0	0	multi-exon	TRUE	canonical	3	4398	junction_3	174.765959202208	2892	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAAAAACCAA	7688	False	NA	NA	False	NA	NA	NA	102298370	102293810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_102294362_102294458_102294540_102294616_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296653_102297031_102297077_102297187_102297248_102297380_102297481_102298215
transcript_16581.known	chr11	-	1564	11	FSM	ENSMUSG00000018677.10	ENSMUST00000153395.8	1564	11	0	0	0	0	multi-exon	FALSE	canonical	3	4398	junction_2	183.250211459632	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTGTGGCTGTAGTGTC	7726	False	NA	95	True	NA	NA	NA	102298332	102293970	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_102294362_102294458_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296653_102297031_102297077_102297187_102297248_102297380_102297481_102298215
transcript_16588.known	chr11	+	2331	13	FSM	ENSMUSG00000034708.13	ENSMUST00000049460.12	2331	13	0	0	0	0	multi-exon	FALSE	canonical	3	528	junction_1	53.84932682959	1751	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGTATCTGATTTGTTGC	4138	False	NA	15	True	AATAAA	-17	NA	102321147	102327633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_102321367_102323790_102323936_102324050_102324177_102324311_102324397_102324761_102324872_102324967_102325104_102325225_102325336_102325528_102325653_102325884_102325983_102326071_102326318_102326534_102326769_102326849_102327075_102327160
transcript_1662.known	chr1	+	3907	15	FSM	ENSMUSG00000026048.17	ENSMUST00000027214.4	3907	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	30.0296622066399	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTACTATCCATATTGTTA	NA	False	NA	94	True	ATTAAA	-40	NA	44187006	44220420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_44187311_44196096_44196273_44197303_44197420_44197964_44198052_44200136_44200198_44200969_44201114_44203036_44203245_44205968_44207043_44212497_44212740_44213071_44213192_44213321_44213536_44214998_44215144_44217333_44217535_44218306_44218392_44219690
transcript_16621.known	chr11	-	6871	8	FSM	ENSMUSG00000034621.15	ENSMUST00000143842.2	6871	8	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	22.9658131018384	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTGGAGTCTGTTGTGA	637	False	NA	-3	True	AATAAA	-18	NA	102447025	102366740	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_102372914_102378325_102378457_102391628_102391773_102398268_102398356_102398969_102399038_102418919_102418993_102429107_102429183_102446905
transcript_16623.nnic	chr11	-	635	8	NNC	ENSMUSG00000034621.15	novel	390	6	NA	NA	16	10073	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	75.4291125521715	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACTCGGCTTAAACTTTC	676	False	NA	NA	False	AATAAA	-7	NA	102446986	102388246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_102388336_102391628_102391773_102398268_102398356_102398969_102399038_102418919_102418993_102422138_102422157_102429107_102429183_102446905
transcript_16627.nnic	chr11	-	852	7	NNC	ENSMUSG00000034621.15	novel	390	6	NA	NA	-3	10073	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	58.3628496753048	55	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACTCGGCTTAAACTTTC	441	False	NA	NA	False	AATAAA	-7	NA	102447221	102388246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_102388336_102391628_102391773_102398268_102398356_102398969_102399038_102418919_102418993_102429107_102429183_102446905
transcript_16629.known	chr11	-	893	2	FSM	ENSMUSG00000034621.15	ENSMUST00000125754.2	893	2	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGTAATGATACCAAGCCAG	444	False	NA	NA	False	NA	NA	NA	102447218	102428602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_102429183_102446905
transcript_16632.nnic	chr11	-	1294	5	NNC	ENSMUSG00000078640.10	novel	796	4	NA	NA	-238	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	1.78535710713571	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTAAACTATTTTCATAT	8000	False	NA	NA	False	NA	NA	NA	102470525	102467269	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_102467624_102467724_102467906_102469575_102469722_102469813_102469917_102470015
transcript_16636.nnic	chr11	-	1254	4	NNC	ENSMUSG00000078640.10	novel	818	3	NA	NA	-333	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	4.64279609239471	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTGCTTCTTTTTTTTT	7905	False	NA	NA	False	NA	NA	NA	102470620	102467223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_102467624_102469575_102469722_102469813_102469917_102470015
transcript_16637.known	chr11	-	796	4	FSM	ENSMUSG00000078640.10	ENSMUST00000139829.2	796	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	2.16024689946929	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTAAACTATTTTCATAT	4	True	NA	NA	False	NA	NA	NA	102470101	102467269	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_102467624_102467724_102467906_102469575_102469722_102469986
transcript_16638.nic	chr11	-	1011	4	NIC	ENSMUSG00000078640.10	novel	796	4	NA	NA	-58	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	2.16024689946929	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTAAACTATTTTCATAT	8180	False	NA	NA	False	NA	NA	NA	102470345	102467269	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_102467624_102467724_102467906_102469575_102469722_102470015
transcript_16642.nic	chr11	-	874	3	NIC	ENSMUSG00000078640.10	novel	818	3	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	3	3	junction_2	6.5	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTGCTTCTTTTTTTTT	8211	False	NA	NA	False	NA	NA	NA	102470314	102467223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_102467624_102469575_102469722_102469986
transcript_16643.known	chr11	-	818	3	FSM	ENSMUSG00000078640.10	ENSMUST00000107081.8	818	3	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	3.5	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTGCTTCTTTTTTTTT	8238	False	NA	NA	False	NA	NA	NA	102470287	102467223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_102467624_102469575_102469722_102470015
transcript_16645.known	chr11	+	4573	8	FSM	ENSMUSG00000051455.14	ENSMUST00000100378.4	4573	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	7.57277616039918	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTTTAGTTTCATTTTT	NA	False	NA	3	True	AATAAA	-13	NA	102556413	102573063	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_102556657_102557161_102557312_102559127_102559286_102563009_102563115_102564864_102566738_102567559_102567695_102570757_102570939_102571335
transcript_16646.known	chr11	-	2316	5	FSM	ENSMUSG00000020925.17	ENSMUST00000164506.3	2316	5	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	239.593405585379	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGTCTTCTGTCTTGTTCT	NA	False	NA	-6	True	AATAAA	-14	NA	102588560	102575513	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_102577323_102579626_102579688_102581028_102581163_102582936_102583025_102588336
transcript_16648.known	chr11	-	407	4	FSM	ENSMUSG00000020925.17	ENSMUST00000124869.8	407	4	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	267.304237818175	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGACACAGAAAGGCGAAC	NA	False	NA	14	True	NA	NA	NA	102588362	102577165	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_102577323_102581026_102581163_102582936_102583025_102588336
transcript_16649.known	chr11	-	989	4	FSM	ENSMUSG00000020925.17	ENSMUST00000153157.8	989	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	267.304237818175	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGGCTTCTTGTTGGGT	NA	False	NA	NA	False	NA	NA	NA	102588560	102579144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_102579686_102581026_102581163_102582936_102583025_102588336
transcript_16650.known	chr11	-	875	3	FSM	ENSMUSG00000020925.17	ENSMUST00000138147.2	875	3	0	0	0	0	multi-exon	FALSE	canonical	3	524	junction_2	39	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTAAATCTCGTGCAAGAC	NA	False	NA	NA	False	NA	NA	NA	102588496	102580535	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_102581163_102582936_102583025_102588336
transcript_16656.known	chr11	-	1890	3	FSM	ENSMUSG00000034520.15	ENSMUST00000092567.11	1890	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	376	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGTTAAAGGGTAATGT	NA	False	NA	-8	True	ATTAAA	-22	NA	102710526	102690404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_102692022_102693666_102693743_102710329
transcript_16657.known	chr11	-	247	3	FSM	ENSMUSG00000034520.15	ENSMUST00000131164.2	247	3	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_2	360	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGTTGGAGCTTCCTGAC	NA	False	NA	NA	False	NA	NA	NA	102710036	102692001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_102692022_102693666_102693743_102709885
transcript_1666.nic	chr1	+	831	5	ISM	ENSMUSG00000026048.17	ENSMUST00000027214.4	3907	15	33	20103	-29	-687	5prime_fragment	FALSE	canonical	0	0	junction_3	40.0398239256868	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGTGTTTCTCATTGC	NA	False	NA	NA	False	AATAAA	-19	NA	44187039	44200317	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_44187311_44196096_44196273_44197303_44197420_44197964_44198052_44200136
transcript_16666.known	chr11	-	3324	28	FSM	ENSMUSG00000020929.15	ENSMUST00000021306.14	3324	28	0	0	0	0	multi-exon	TRUE	canonical	3	142	junction_26	264.162864923118	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTGGTTTGCTGCTTTC	8466	False	NA	-5	True	TATAAA	-22	NA	102771793	102729298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_102729723_102729975_102730084_102730245_102730400_102730849_102730945_102731089_102731209_102731995_102732084_102732226_102732354_102732507_102732595_102734175_102734259_102734965_102735068_102736921_102737063_102737410_102737523_102738783_102738978_102740009_102740138_102742582_102742719_102745604_102745696_102746049_102746114_102750827_102750953_102753436_102753604_102755533_102755617_102756395_102756487_102758671_102758708_102759412_102759479_102759920_102759997_102760993_102761073_102761845_102762012_102768435_102768545_102771720
transcript_1668.known	chr1	+	1779	1	FSM	ENSMUSG00000026048.17	ENSMUST00000188376.2	1779	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACCATGTGAATAGCTGAG	NA	False	NA	NA	False	AATAAA	-14	NA	44186903	44188682	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_44186900_44188700
transcript_16685.nic	chr11	-	960	6	ISM	ENSMUSG00000020929.15	ENSMUST00000021306.14	3324	28	-20	29743	-2	1719	5prime_fragment	FALSE	canonical	3	142	junction_4	515.263583032995	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGACTGTTTTGACGTGT	8446	False	NA	NA	False	AATAAA	-17	NA	102771813	102759041	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_102759479_102759920_102759997_102760993_102761073_102761845_102762012_102768435_102768545_102771720
transcript_16686.known	chr11	-	796	2	FSM	ENSMUSG00000020929.15	ENSMUST00000148209.2	796	2	0	0	0	0	multi-exon	FALSE	canonical	3	1254	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCTGTCTCAAAAAAAAAAAG	8498	False	NA	NA	False	NA	NA	NA	102771761	102767789	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_102768545_102771720
transcript_16687.known	chr11	-	3339	28	FSM	ENSMUSG00000020929.15	ENSMUST00000107060.8	3339	28	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_26	289.083827865911	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTGGTTTGCTGCTTTC	8448	False	NA	-5	True	TATAAA	-22	NA	102771811	102729298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_102729723_102729975_102730084_102730245_102730400_102730849_102730945_102731089_102731209_102731995_102732084_102732226_102732354_102732507_102732595_102734175_102734259_102734965_102735068_102736921_102737063_102737410_102737523_102738783_102738978_102740009_102740138_102742582_102742719_102745604_102745696_102746049_102746114_102750827_102750953_102753436_102753604_102755533_102755617_102756395_102756487_102758671_102758708_102759412_102759479_102759920_102759997_102760993_102761073_102761845_102762009_102768435_102768545_102771720
transcript_16688.known	chr11	+	1156	5	FSM	ENSMUSG00000020930.10	ENSMUST00000159834.2	1156	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.82915619758885	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTTAACCGCTGAGCTA	NA	False	NA	NA	False	NA	NA	NA	102772070	102775349	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_102772142_102773177_102773258_102773370_102773523_102773899_102774033_102774629
transcript_16689.known	chr11	+	1841	5	FSM	ENSMUSG00000020930.10	ENSMUST00000021307.10	1841	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.82915619758885	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCGCCTCTGCAGTTCAC	NA	False	NA	NA	False	AATAAA	-16	NA	102772029	102776042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_102772142_102773177_102773258_102773370_102773523_102773899_102774033_102774678
transcript_1669.known	chr1	-	309	1	FSM	ENSMUSG00000101567.2	ENSMUST00000186385.2	309	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTCCTAATCATGCTCTG	NA	False	NA	NA	False	NA	NA	NA	44503391	44503082	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_44503100_44503400
transcript_16691.nnic	chr11	+	1350	5	NNC	ENSMUSG00000020930.10	novel	1841	5	NA	NA	8	-176	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.82915619758885	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATGTGTATGAGTGTTT	NA	False	NA	NA	False	AAAAAG	-4	NA	102772037	102775173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_102772528_102773177_102773258_102773370_102773523_102773899_102774033_102774678
transcript_16695.known	chr11	-	2648	9	FSM	ENSMUSG00000020932.15	ENSMUST00000067444.10	2648	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	0.866025403784439	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGTGGCTCTGATTTGTT	NA	False	NA	1	True	AATAAA	-22	NA	102787957	102778161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_102779548_102780260_102780347_102782736_102782781_102783860_102784082_102784286_102784413_102785203_102785366_102786298_102786395_102786575_102786637_102787491
transcript_16696.known	chr11	-	3326	16	FSM	ENSMUSG00000051378.11	ENSMUST00000021311.10	3326	16	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_10	31.928809700471	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCTGGAAAGTTAGTGCT	3724	False	NA	-7	True	AATAAA	-32	NA	102815950	102796354	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_102797103_102797321_102797408_102797821_102797903_102798938_102799465_102799712_102799919_102803179_102803296_102803745_102803915_102804275_102804377_102804509_102804585_102805075_102805253_102805364_102805563_102805640_102805752_102805975_102806081_102806368_102806527_102807014_102807342_102815808
transcript_1670.known	chr1	+	3138	11	FSM	ENSMUSG00000056870.10	ENSMUST00000074525.10	3138	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_7	3.104834939252	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTATGATATGCTCACTTA	NA	False	NA	NA	False	AATAAA	-20	NA	44590670	44835998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_44591033_44728303_44728376_44747776_44747839_44783633_44783706_44793502_44793602_44805173_44805312_44812430_44812548_44813212_44813306_44820127_44820267_44827607_44827703_44834109
transcript_16702.known	chr11	-	1187	3	FSM	ENSMUSG00000085338.2	ENSMUST00000138424.2	1187	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCAGGCTCCTCCTCGCAG	7470	False	NA	NA	False	AATAAA	-19	NA	102855213	102849125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_102849726_102852634_102852855_102854846
transcript_16713.known	chr11	+	449	3	FSM	ENSMUSG00000020936.9	ENSMUST00000135332.2	449	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	516.5	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAGAAAAAGAAACA	NA	False	NA	29	True	NA	NA	NA	102919015	102934024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_102919256_102919350_102919529_102933993
transcript_16715.known	chr11	-	1744	5	FSM	ENSMUSG00000020935.9	ENSMUST00000021313.9	1744	5	0	0	0	0	multi-exon	FALSE	canonical	3	1121	junction_2	32.0965340808007	2165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGAATTCCACTTGGCCT	8193	False	NA	-5	True	NA	NA	NA	102907994	102884872	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_102885999_102888178_102888267_102890469_102890674_102890975_102891183_102907875
transcript_16716.known	chr11	+	4861	12	FSM	ENSMUSG00000020936.9	ENSMUST00000021314.8	4861	12	0	0	0	0	multi-exon	TRUE	canonical	3	928	junction_6	43.300411312535	1122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTCTCCTGGTGTTCTT	NA	False	NA	9	True	AATAAA	-16	NA	102919171	102959738	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_102919529_102933993_102934103_102937204_102937350_102943031_102943151_102946023_102946116_102947208_102947326_102948190_102948362_102949030_102949140_102950903_102951075_102954633_102954802_102955555_102955694_102956573
transcript_16718.known	chr11	-	3023	15	FSM	ENSMUSG00000020937.15	ENSMUST00000103077.2	3023	15	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_14	6.65168384389875	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTGTACCTTTCCACT	9409	False	NA	NA	False	AGTAAA	-2	NA	102992484	102961129	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_102961756_102961835_102961986_102962080_102962217_102962466_102962634_102964553_102964671_102965384_102965536_102965682_102965830_102967539_102967693_102968307_102968453_102968586_102968789_102969064_102969294_102970365_102970496_102971012_102971242_102971329_102971492_102992205
transcript_16726.known	chr11	+	2083	10	FSM	ENSMUSG00000056938.17	ENSMUST00000092559.13	2083	10	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	33.6455746177417	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGTCTGGGAACCCG	NA	False	NA	6	True	ATTAAA	-16	NA	102992507	103003026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_102992615_102993507_102993923_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
transcript_16732.known	chr11	+	3495	1	FSM	ENSMUSG00000048878.7	ENSMUST00000053063.7	3495	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTTCCTCGTGATTTTC	NA	False	NA	NA	False	ATTAAA	-15	NA	103007056	103010551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_103007100_103010600
transcript_16733.nnic	chr11	+	1260	3	NNC	ENSMUSG00000043372.13	novel	370	2	NA	NA	-482	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	13	94	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAGTGGCTACAATTGA	NA	False	NA	NA	False	ATTAAA	-18	NA	103022772	103030017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_103022921_103024860_103024968_103029012
transcript_16736.known	chr11	+	1910	3	FSM	ENSMUSG00000043372.13	ENSMUST00000062530.5	1910	3	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	11.5	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAAGAACTTGTGGCCTG	NA	False	NA	-10	True	NA	NA	NA	103024170	103030702	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_103024284_103024860_103024968_103029012
transcript_16737.known	chr11	+	654	3	FSM	ENSMUSG00000043372.13	ENSMUST00000124928.2	654	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	13	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGACAGTGATGGGCAAGGC	NA	False	NA	NA	False	NA	NA	NA	103024164	103029472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_103024249_103024857_103024968_103029012
transcript_16738.nnic	chr11	+	1166	3	NNC	ENSMUSG00000043372.13	novel	1221	3	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	13.5	99	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAGTGGCTACAATTGA	NA	False	NA	NA	False	ATTAAA	-18	NA	103024135	103030017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_103024190_103024860_103024968_103029012
transcript_16739.known	chr11	-	1199	10	FSM	ENSMUSG00000020940.14	ENSMUST00000021323.11	1199	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	6.89605362185907	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGCTGCGCCTAGTGGGA	2261	False	NA	NA	False	AGTAAA	-17	NA	103099374	103089769	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_103089945_103090143_103090297_103090472_103090649_103090888_103091010_103091093_103091166_103091616_103091761_103091921_103091969_103092089_103092315_103092542_103092589_103099334
transcript_16740.nic	chr11	-	595	2	ISM	ENSMUSG00000020940.14	ENSMUST00000021323.11	1199	10	8811	0	8785	0	intron_retention	FALSE	canonical	3	22	junction_1	0	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGCTGCGCCTAGTGGGA	NA	False	NA	NA	False	AGTAAA	-17	NA	103090563	103089769	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_103089945_103090143
transcript_16742.known	chr11	+	923	2	FSM	ENSMUSG00000085733.2	ENSMUST00000130556.2	923	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTTTCCTTCTTTTGTCC	NA	False	NA	NA	False	NA	NA	NA	103254038	103255477	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_103254628_103255143
transcript_16743.known	chr11	-	5968	12	FSM	ENSMUSG00000034247.10	ENSMUST00000041272.10	5968	12	0	0	0	0	multi-exon	TRUE	canonical	3	46	junction_6	16.0020659823186	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTTGTGTTTAGTGTCTAT	NA	False	NA	-2	True	AATAAA	-17	NA	103303513	103255100	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_103257820_103258423_103258582_103258933_103258998_103261687_103261882_103264765_103264912_103267418_103268340_103270859_103271179_103277783_103278175_103285513_103286141_103287852_103288101_103294650_103294737_103303418
transcript_16748.nic	chr11	-	373	3	ISM	ENSMUSG00000078632.5	ENSMUST00000153273.3	9931	14	53364	0	53364	0	3prime_fragment	FALSE	canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGTGAGTATCAAAGTC	2626	False	NA	NA	False	AATAAA	-13	NA	103342059	103341534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_103341636_103341713_103341860_103341933
transcript_16750.known	chr11	-	3266	6	FSM	ENSMUSG00000020946.14	ENSMUST00000021329.14	3266	6	0	0	0	0	multi-exon	TRUE	canonical	3	264	junction_1	54.6867442804927	673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTTGGCATTCTTTGTCT	NA	False	NA	2	True	AATAAA	-31	NA	103588724	103567674	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_103570224_103574617_103574759_103577407_103577541_103578350_103578460_103580080_103580146_103588455
transcript_16753.known	chr11	-	917	5	FSM	ENSMUSG00000020946.14	ENSMUST00000145265.2	917	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	142.958910180513	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGGTGAGGCTTTTACA	NA	False	NA	NA	False	NA	NA	NA	103588524	103569758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_103570224_103574617_103574759_103577407_103577541_103578350_103578460_103588455
transcript_16756.known	chr11	-	1044	5	FSM	ENSMUSG00000020946.14	ENSMUST00000107013.3	1044	5	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	134.545531326759	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCTGGAAGCAGCTACTC	NA	False	NA	NA	False	AAGAAA	-40	NA	103588520	103569551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_103570224_103577407_103577541_103578350_103578460_103580080_103580146_103588455
transcript_16759.known	chr11	+	3076	5	FSM	ENSMUSG00000000125.6	ENSMUST00000000127.6	3076	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.4790199457749	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAGAAAATCTATTTCATC	NA	False	NA	NA	False	NA	NA	NA	103664975	103708783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_103665175_103698975_103699218_103702153_103702420_103703106_103703595_103706902
transcript_1676.known	chr1	+	2953	21	FSM	ENSMUSG00000025995.17	ENSMUST00000027139.15	2953	21	0	0	0	0	multi-exon	FALSE	canonical	3	530	junction_5	51.2145243070752	690	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAAAGCCTTGTGTTTAT	NA	False	NA	8	True	TATAAA	-24	NA	45834325	45862779	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_45834765_45838175_45838306_45840320_45840387_45841198_45841290_45843036_45843162_45844536_45844608_45845832_45845953_45846830_45846920_45851200_45851360_45852204_45852265_45852349_45852466_45853700_45853877_45855636_45855795_45856422_45856604_45857329_45857425_45857981_45858078_45858648_45858819_45859290_45859351_45861607_45861755_45862042_45862135_45862467
transcript_16760.nic	chr11	+	890	2	ISM	ENSMUSG00000000125.6	ENSMUST00000000127.6	3076	5	38048	1562	38048	-1562	3prime_fragment	FALSE	canonical	2	4	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTACCGCAACAGAACAGGC	5278	False	NA	NA	False	NA	NA	NA	103703023	103707221	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_103703595_103706902
transcript_16761.known	chr11	-	3766	21	FSM	ENSMUSG00000034187.19	ENSMUST00000103075.11	3766	21	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_14	21.9246436687122	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTATAGACCAGTATTT	NA	False	NA	NA	False	AATAAA	-19	NA	103844882	103712607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_103714086_103714564_103714621_103718036_103718151_103719257_103719393_103737199_103737280_103738819_103738887_103749720_103749855_103752718_103752876_103754064_103754161_103762984_103763173_103763416_103763492_103763970_103764137_103773567_103773768_103801268_103801425_103804141_103804218_103804626_103804735_103807331_103807499_103816973_103817014_103819569_103819670_103821555_103821642_103844795
transcript_16770.known	chr11	-	3212	9	FSM	ENSMUSG00000034187.19	ENSMUST00000145126.8	3212	9	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_2	26.9973957077345	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAAACTAAAGAAGTAA	NA	False	NA	NA	False	NA	NA	NA	103844850	103771343	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_103773768_103801268_103801425_103804141_103804218_103804626_103804735_103807331_103807499_103816973_103817014_103819569_103819670_103821555_103821642_103844795
transcript_16772.nic	chr11	-	1854	8	ISM	ENSMUSG00000034187.19	ENSMUST00000145126.8	3212	9	-49	28908	-17	0	5prime_fragment	FALSE	canonical	3	278	junction_1	26.1689955200923	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACCAG	NA	False	NA	NA	False	NA	NA	NA	103844899	103800251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_103801425_103804141_103804218_103804626_103804735_103807331_103807499_103816973_103817014_103819569_103819670_103821555_103821642_103844795
transcript_16773.known	chr11	-	1853	9	FSM	ENSMUSG00000034187.19	ENSMUST00000107009.8	1853	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_8	133.041346956501	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACCAG	NA	False	NA	NA	False	NA	NA	NA	103844850	103800251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_103801425_103804141_103804218_103804626_103804735_103807331_103807499_103816973_103817014_103819569_103819670_103821555_103821642_103821901_103821950_103844795
transcript_16774.known	chr11	+	2242	5	FSM	ENSMUSG00000062421.14	ENSMUST00000057921.10	2242	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_4	7.43303437365925	223	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTCATGTTCTCCTGGA	NA	False	NA	31	True	AATAAA	-20	NA	103857564	103876163	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_103857654_103859904_103860072_103863778_103863890_103872519_103872645_103874413
transcript_16780.known	chr11	+	5253	10	FSM	ENSMUSG00000018411.18	ENSMUST00000106992.10	5253	10	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	196.187551989303	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAATCTCTGTTCATGAG	NA	False	NA	NA	False	AATAAA	-19	NA	104122215	104222916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_104122434_104173193_104173307_104185684_104185751_104193186_104193237_104197451_104197585_104201094_104201361_104208982_104209076_104212176_104212259_104213253_104213367_104218797
transcript_16831.nnic	chr11	+	1168	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8254	0	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_1	186.526640188473	304	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGGGAAAAAAAAACATGTA	9602	False	NA	5	True	AATAAA	-9	NA	104200604	104219261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_104200848_104201094_104201361_104212176_104212259_104213253_104213367_104218797
transcript_16843.known	chr11	+	701	3	FSM	ENSMUSG00000018411.18	ENSMUST00000138384.8	701	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	6.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAAATTT	NA	False	NA	NA	False	NA	NA	NA	104122304	104186143	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_104122434_104173193_104173307_104185684
transcript_16846.known	chr11	-	5222	15	FSM	ENSMUSG00000018412.17	ENSMUST00000106971.2	5222	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	64.3563500823219	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGGAAAAATGAAAAAAA	8758	False	NA	-46	True	NA	NA	NA	104332528	104224370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_104226032_104226272_104226526_104227046_104227160_104227374_104227433_104228951_104229074_104233188_104233338_104233684_104233874_104234316_104234500_104241312_104241479_104247509_104247703_104248306_104248423_104259505_104259605_104269510_104269653_104314747_104316120_104332122
transcript_16847.nic	chr11	-	1498	11	ISM	ENSMUSG00000020687.14	ENSMUST00000093923.9	5425	19	-170	18783	-33	-1274	5prime_fragment	FALSE	canonical	3	170	junction_6	29.5323551380516	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAAAACTAATAAAGGAGGA	2033	False	NA	NA	False	AATGAA	-36	NA	104441479	104412353	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_104412415_104413548_104413649_104416876_104416993_104417688_104417804_104419088_104419301_104419403_104419559_104420166_104420265_104422555_104422682_104425563_104425712_104427420_104427497_104441188
transcript_16851.known	chr11	-	486	4	FSM	ENSMUSG00000020687.14	ENSMUST00000135303.2	486	4	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_3	91.8416511659546	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATTGGTAAGTGCAAGTG	2066	False	NA	NA	False	NA	NA	NA	104441446	104422562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_104422682_104425563_104425712_104427420_104427497_104441303
transcript_16856.nic	chr11	+	818	4	NIC	ENSMUSG00000061086.13	novel	900	7	NA	NA	-915	0	intron_retention	FALSE	canonical	3	41	junction_3	1.69967317119759	505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCGTTGATTTGTTTT	NA	False	NA	12	True	AATAAA	-26	NA	104474874	104478041	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_104475439_104475762_104475841_104476552_104476598_104477910
transcript_16857.nic	chr11	+	847	4	NIC	ENSMUSG00000061086.13	novel	486	3	NA	NA	-685	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	20.5101600838869	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAATTAAACATTCTAACA	NA	False	NA	NA	False	NA	NA	NA	104475104	104486579	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_104475439_104475762_104475841_104476552_104476598_104486189
transcript_16861.known	chr11	+	879	9	FSM	ENSMUSG00000061086.13	ENSMUST00000018800.9	879	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	20.7360645977003	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCGTTGATTTGTTTT	NA	False	NA	12	True	AATAAA	-26	NA	104441488	104478041	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_104441586_104452379_104452402_104468246_104468401_104471227_104471256_104474803_104474954_104475264_104475439_104475762_104475841_104476552_104476598_104477910
transcript_16862.known	chr11	+	900	7	FSM	ENSMUSG00000061086.13	ENSMUST00000106956.10	900	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	21.2243309016379	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCGTTGATTTGTTTT	NA	False	NA	12	True	AATAAA	-26	NA	104468106	104478041	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_104468401_104471227_104471256_104474803_104474954_104475264_104475439_104475762_104475841_104476552_104476598_104477910
transcript_16864.known	chr11	+	2556	8	FSM	ENSMUSG00000020691.14	ENSMUST00000136214.8	2556	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	88.9260183225015	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAATAAGAAA	NA	False	NA	NA	False	NA	NA	NA	105017304	105031220	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_105018268_105019566_105019902_105021272_105021323_105022398_105022460_105023266_105023407_105026163_105026271_105028544_105028611_105030386
transcript_16865.known	chr11	+	1867	9	FSM	ENSMUSG00000020691.14	ENSMUST00000021030.8	1867	9	0	0	0	0	multi-exon	TRUE	canonical	3	226	junction_6	21.0698243941424	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAATAAGAAA	NA	False	NA	NA	False	NA	NA	NA	105017250	105031220	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_105017433_105017601_105017694_105019566_105019902_105021272_105021323_105022398_105022460_105023266_105023407_105026163_105026271_105028544_105028611_105030386
transcript_16866.known	chr11	+	831	3	FSM	ENSMUSG00000020695.15	ENSMUST00000126931.2	831	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAAAGTGGCTCAGTGGAT	1497	False	NA	NA	False	AATAAA	-18	NA	105183468	105217717	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_105183728_105216327_105216730_105217547
transcript_16868.nic	chr11	+	978	2	ISM	ENSMUSG00000020695.15	ENSMUST00000126931.2	831	3	-101	772	-101	-772	5prime_fragment	FALSE	canonical	2	4	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATGAGGTTAAATCCCAGC	1396	False	NA	NA	False	NA	NA	NA	105183367	105216945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_105183728_105216327
transcript_16870.nic	chr11	-	2801	7	NIC	ENSMUSG00000019590.17	novel	2741	6	NA	NA	-54	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_6	64.1320252811859	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTTGCCTTCTGTCTTCAT	NA	False	NA	-4	True	AATAAA	-15	NA	105835019	105824527	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_105826394_105826577_105826736_105827007_105827112_105827380_105827480_105828454_105828667_105830925_105831205_105834936
transcript_16871.nnic	chr11	-	2764	7	NNC	ENSMUSG00000019590.17	novel	2741	6	NA	NA	-556	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_6	70.9475549653091	73	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTTGCCTTCTGTCTTCAT	NA	False	NA	-4	True	AATAAA	-15	NA	105835869	105824527	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_105826394_105826577_105826736_105827007_105827112_105827380_105827480_105828454_105828667_105830925_105831205_105835823
transcript_16873.known	chr11	-	2741	6	FSM	ENSMUSG00000019590.17	ENSMUST00000019734.11	2741	6	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_5	37.6690854680599	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTTGCCTTCTGTCTTCAT	NA	False	NA	-4	True	AATAAA	-15	NA	105835238	105824527	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_105826394_105826577_105826736_105827007_105827112_105827380_105827480_105828454_105828667_105834936
transcript_16874.nnic	chr11	-	2513	6	NNC	ENSMUSG00000019590.17	novel	2741	6	NA	NA	-584	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_5	67.416318499307	70	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTTGCCTTCTGTCTTCAT	NA	False	NA	-4	True	AATAAA	-15	NA	105835897	105824527	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_105826394_105826577_105826736_105827007_105827112_105827380_105827480_105828454_105828667_105835823
transcript_16876.known	chr11	-	1130	6	FSM	ENSMUSG00000019590.17	ENSMUST00000184086.8	1130	6	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	71.4898594207598	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGAGCTAGACAATAGCTC	NA	False	NA	NA	False	NA	NA	NA	105834965	105825909	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_105826394_105826577_105826780_105827007_105827112_105827380_105827480_105828454_105828667_105834936
transcript_16879.nic	chr11	+	1059	5	ISM	ENSMUSG00000020681.15	ENSMUST00000001964.8	2418	14	10313	0	8916	0	3prime_fragment	FALSE	canonical	0	0	junction_4	2.38484800354236	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCCACACCTGAGTCTGT	NA	False	NA	NA	False	ATTAAA	-6	NA	105876346	105880079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_105876544_105876815_105876915_105878841_105878965_105879254_105879443_105879627
transcript_16883.known	chr11	+	5750	7	FSM	ENSMUSG00000049354.9	ENSMUST00000058438.9	5750	7	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_6	15.5527775297176	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTCTTGTGATGAATTCA	4745	False	NA	15	True	AATAAA	-24	NA	105927697	105950150	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_105928088_105937516_105937676_105938462_105938575_105938968_105939088_105942582_105942793_105944556_105944675_105945508
transcript_16885.known	chr11	+	1383	5	FSM	ENSMUSG00000001983.8	ENSMUST00000002048.8	1383	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	5.93717104351896	291	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTCTTGAGGTGTCCTGA	874	False	NA	26	True	NA	NA	NA	105956886	105964438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_105957345_105960331_105960439_105962692_105962821_105963356_105963535_105963926
transcript_16888.known	chr11	-	644	2	FSM	ENSMUSG00000085255.2	ENSMUST00000140736.2	644	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCTTGAAACTCTTTAAG	NA	False	NA	NA	False	AATAAA	-18	NA	105957131	105955902	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_105956123_105956707
transcript_16889.known	chr11	-	798	5	FSM	ENSMUSG00000040699.14	ENSMUST00000064545.11	798	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	116.808336603172	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACAAGCCCAGCTTCCCTA	NA	False	NA	NA	False	NA	NA	NA	106050753	106049256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_106049660_106049760_106049901_106049987_106050033_106050173_106050269_106050638
transcript_16890.known	chr11	-	2950	5	FSM	ENSMUSG00000040699.14	ENSMUST00000045923.10	2950	5	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_1	24.7638849940796	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGCATGTCCACAGTTT	NA	False	NA	NA	False	AATAAA	-27	NA	106050968	106047081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_106049660_106049760_106049901_106049987_106050033_106050173_106050269_106050876
transcript_16891.nnic	chr11	-	1642	5	NIC	ENSMUSG00000040699.14	novel	2950	5	NA	NA	-68	273	combination_of_known_splicesites	FALSE	canonical	3	12	junction_4	112.144995430024	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGACTCTCTTGTGTGGC	NA	False	NA	-14	True	TTTAAA	-15	NA	106051754	106048866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_106049660_106049760_106049901_106049987_106050033_106050173_106050269_106051185
transcript_16893.known	chr11	-	2099	13	FSM	ENSMUSG00000069631.15	ENSMUST00000007444.14	2099	13	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_9	54.9804889635102	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAATTAAAATTTTCAGAGA	NA	False	NA	-34	True	NA	NA	NA	106084362	106054176	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_106055018_106055256_106055300_106055545_106055788_106058637_106058743_106059134_106059307_106061779_106061904_106061981_106062091_106064078_106064201_106064504_106064608_106071780_106071810_106075387_106075446_106077926_106078007_106084291
transcript_16902.known	chr11	-	1517	11	FSM	ENSMUSG00000069631.15	ENSMUST00000103072.10	1517	11	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_9	16.6340013225922	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATCACCAGGGACTTGGA	NA	False	NA	NA	False	NA	NA	NA	106084388	106054673	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_106055018_106055256_106055300_106055545_106055788_106058637_106058743_106059134_106059307_106061779_106061904_106061981_106062091_106064078_106064201_106064504_106064608_106077950_106078007_106084291
transcript_1691.nic	chr1	+	652	6	ISM	ENSMUSG00000025995.17	ENSMUST00000154436.8	3226	20	-13	18157	-13	0	5prime_fragment	FALSE	canonical	3	530	junction_5	70.1843287351243	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGAATTCCCTTTTATTG	NA	False	NA	NA	False	AAAAAG	-15	NA	45834595	45844607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_45834765_45838175_45838306_45840320_45840387_45841198_45841290_45843036_45843162_45844536
transcript_16912.known	chr11	+	4011	18	FSM	ENSMUSG00000020705.7	ENSMUST00000021046.6	4011	18	0	0	0	0	multi-exon	FALSE	canonical	2	294	junction_3	62.7187383355908	473	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCTTTTATCTTTTTATT	NA	False	NA	28	True	ATTAAA	-15	NA	106107751	106139965	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_106107983_106114906_106115145_106115609_106115761_106119588_106119651_106121155_106121193_106121957_106122108_106123631_106123737_106125677_106125798_106126432_106126610_106127820_106127950_106129333_106129434_106129961_106130010_106130827_106130926_106132376_106132654_106133700_106133928_106136152_106136264_106137601_106137704_106138317
transcript_16918.nic	chr11	+	689	4	ISM	ENSMUSG00000020705.7	ENSMUST00000021046.6	4011	18	-13	20321	-13	-10006	5prime_fragment	FALSE	canonical	2	294	junction_3	58.7329171381395	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCAAGTAAGTTTTTTTCT	NA	False	NA	NA	False	AAGAAA	-20	NA	106107738	106119644	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_106107983_106114906_106115145_106115609_106115761_106119588
transcript_1692.nic	chr1	+	885	6	ISM	ENSMUSG00000025995.17	ENSMUST00000154436.8	3226	20	-13	17924	-13	233	5prime_fragment	FALSE	canonical	3	530	junction_5	70.1843287351243	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGGCCTGGTGATTCTCA	NA	False	NA	NA	False	AATAAA	-19	NA	45834595	45844840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_45834765_45838175_45838306_45840320_45840387_45841198_45841290_45843036_45843162_45844536
transcript_16920.known	chr11	-	3144	21	FSM	ENSMUSG00000020706.14	ENSMUST00000021048.7	3144	21	0	0	0	0	multi-exon	FALSE	canonical	3	632	junction_7	76.5847732907789	1450	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTTTTCTGATAGTTTA	NA	False	NA	-14	True	AATAAA	-13	NA	106146905	106139967	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_106140443_106140529_106140625_106140698_106140883_106140980_106141081_106141173_106141260_106141387_106141663_106141731_106141850_106141979_106142162_106143028_106143165_106143253_106143404_106143491_106143573_106143725_106143827_106143906_106144012_106144114_106144231_106144307_106144503_106144587_106144688_106145432_106145513_106145611_106145659_106146145_106146252_106146410_106146504_106146586
transcript_1693.known	chr1	-	3370	8	FSM	ENSMUSG00000025993.11	ENSMUST00000027137.11	3370	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1.82946406783796	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGTGTGCTGTAGTCAAT	NA	False	NA	NA	False	TATAAA	-31	NA	45964742	45947227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_45948880_45950051_45950691_45951395_45951642_45957468_45957596_45958044_45958161_45960315_45960476_45963876_45963945_45964380
transcript_16937.known	chr11	+	1316	11	FSM	ENSMUSG00000020708.13	ENSMUST00000021049.9	1316	11	0	0	0	0	multi-exon	FALSE	canonical	3	2261	junction_6	178.766439803449	18316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACAACTCCAGTTTGTT	4536	False	NA	15	True	AATAAA	-19	NA	106146979	106153946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152731_106152859_106152943_106153135_106153229_106153329_106153406_106153518_106153622_106153710_106153834
transcript_16938.known	chr11	+	1394	10	FSM	ENSMUSG00000020708.13	ENSMUST00000133131.2	1394	10	0	0	0	0	multi-exon	FALSE	canonical	3	2261	junction_6	179.113523556954	1092	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACAACTCCAGTTTGTT	4536	False	NA	15	True	AATAAA	-19	NA	106146979	106153946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152731_106152859_106152943_106153135_106153229_106153518_106153622_106153710_106153834
transcript_16939.known	chr11	-	2747	13	FSM	ENSMUSG00000078619.11	ENSMUST00000021052.16	2747	13	0	0	0	0	multi-exon	FALSE	canonical	3	510	junction_5	34.2842488939487	374	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCAGACCTGGTCATTGA	NA	False	NA	-7	True	AATAAA	-20	NA	106163798	106154004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_106154946_106155020_106155123_106155258_106155382_106155497_106155634_106155765_106155864_106156008_106156171_106156485_106156588_106156713_106156810_106157362_106157519_106157716_106157840_106157963_106158007_106158159_106158345_106163318
transcript_16940.known	chr11	-	862	5	FSM	ENSMUSG00000020713.7	ENSMUST00000103071.4	862	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	0.866025403784439	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCACCCGGCTAGAGGTC	7057	False	NA	NA	False	AATAAA	-14	NA	106192691	106191096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_106191393_106191590_106191753_106191920_106192038_106192221_106192383_106192565
transcript_16941.nic	chr11	-	909	4	ISM	ENSMUSG00000020713.7	ENSMUST00000103071.4	862	5	136	0	136	0	3prime_fragment	FALSE	canonical	1	2	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCACCCGGCTAGAGGTC	7193	False	NA	NA	False	AATAAA	-14	NA	106192555	106191096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_106191393_106191590_106191753_106191920_106192038_106192221
transcript_16942.known	chr11	-	1195	6	FSM	ENSMUSG00000040592.12	ENSMUST00000167143.2	1195	6	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_4	7.4027022093287	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATCTTCGTGATATCAT	5089	False	NA	-3	True	AATAAA	-17	NA	106205355	106202169	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_106202732_106202832_106202875_106203147_106203267_106203458_106203768_106204486_106204538_106205243
transcript_16950.known	chr11	-	4934	12	FSM	ENSMUSG00000040548.17	ENSMUST00000042780.14	4934	12	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_11	20.6061051692923	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCAGACAAGCATGTT	3331	False	NA	NA	False	AATAAA	-11	NA	106503756	106392972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_106394545_106397692_106397814_106402727_106402938_106404412_106404539_106410707_106410841_106420087_106420188_106424696_106424844_106434997_106435246_106437489_106437830_106439539_106439741_106457790_106459454_106503683
transcript_16965.nnic	chr11	-	3325	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9065	0	at_least_one_novel_splicesite	FALSE	canonical	3	341	junction_15	368.337888357959	321	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	359	False	NA	-10	True	AATAAA	-18	NA	106615285	106545043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615168
transcript_16966.nnic	chr11	-	3308	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9076	0	at_least_one_novel_splicesite	FALSE	canonical	3	388	junction_15	360.626097533473	346	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	348	False	NA	-10	True	AATAAA	-18	NA	106615296	106545043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615196
transcript_16970.nnic	chr11	-	3269	15	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-9065	0	at_least_one_novel_splicesite	FALSE	canonical	3	341	junction_14	378.799506766483	313	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	359	False	NA	-9	True	AATAAA	-19	NA	106615285	106545042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_106545989_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615168
transcript_16971.nnic	chr11	-	3252	15	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-9076	0	at_least_one_novel_splicesite	FALSE	canonical	3	388	junction_14	370.599266494863	336	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	348	False	NA	-9	True	AATAAA	-19	NA	106615296	106545042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_106545989_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615196
transcript_16972.nnic	chr11	-	3273	15	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-9109	0	at_least_one_novel_splicesite	FALSE	canonical	3	387	junction_14	370.771513611985	314	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	315	False	NA	-9	True	AATAAA	-19	NA	106615329	106545042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_106545989_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615208
transcript_16977.nnic	chr11	-	3198	14	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-9076	0	at_least_one_novel_splicesite	FALSE	canonical	3	239	junction_2	473.471167808096	270	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	348	False	NA	-9	True	AATAAA	-19	NA	106615296	106545042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_106545989_106570374_106570438_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615196
transcript_1698.known	chr1	-	5498	10	FSM	ENSMUSG00000025986.7	ENSMUST00000027131.6	5498	10	0	0	0	0	multi-exon	TRUE	canonical	3	237	junction_4	21.0736509753792	235	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTGTGTTTTCATTGTC	NA	False	NA	NA	False	AATAAA	-16	NA	46893206	46846703	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_46849272_46851145_46851337_46857222_46857304_46858224_46858594_46859682_46859804_46865252_46865442_46866502_46866673_46871715_46871924_46874286_46875312_46892630
transcript_17.known	ERCC-00040	+	728	1	FSM	ERCC-00040A	DQ883661	728	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	728	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00040_+_0_700
transcript_17006.nic	chr11	-	1483	9	NIC	ENSMUSG00000020718.13	novel	1770	8	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_8	22.7692226481274	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTTTGGACTTTTGTA	4308	False	NA	NA	False	AATAAA	-33	NA	106670352	106659078	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_106659298_106663477_106663579_106664210_106664292_106664420_106664562_106666252_106666427_106667968_106668075_106668260_106668388_106669542_106669634_106669909
transcript_17009.known	chr11	-	1506	8	FSM	ENSMUSG00000020718.13	ENSMUST00000021060.6	1506	8	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_7	14.9652659072089	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTTTGGACTTTTGTA	4319	False	NA	NA	False	AATAAA	-33	NA	106670341	106659078	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_106659298_106663477_106663579_106664210_106664292_106664420_106664562_106666252_106666427_106667968_106668075_106668260_106668388_106669784
transcript_17010.nic	chr11	-	1427	8	NIC	ENSMUSG00000020718.13	novel	1770	8	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_7	16.8001457719623	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTTTGGACTTTTGTA	4273	False	NA	NA	False	AATAAA	-33	NA	106670387	106659078	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_106659298_106663477_106663579_106664210_106664292_106664420_106664562_106666252_106666427_106667968_106668075_106668260_106668388_106669909
transcript_17011.nnic	chr11	-	1121	8	NNC	ENSMUSG00000020718.13	novel	1770	8	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_7	20.9469689980217	83	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTTTGGACTTTTGTA	4279	False	NA	NA	False	AATAAA	-33	NA	106670381	106659078	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_106659298_106663477_106663579_106664210_106664292_106664420_106664562_106666252_106666427_106667968_106668075_106668260_106668388_106670209
transcript_17020.known	chr11	-	1770	8	FSM	ENSMUSG00000020718.13	ENSMUST00000127061.8	1770	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_7	17.739613230029	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTTTGGACTTTTGTA	4297	False	NA	NA	False	AATAAA	-33	NA	106670363	106659078	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_106659298_106663477_106663579_106664210_106664292_106664420_106664562_106666252_106666427_106667968_106668075_106668260_106668388_106669542
transcript_17026.nic	chr11	-	2474	14	NIC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	497	junction_13	995.534526816042	1165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAGTGAAATTGTACTT	8952	False	NA	-9	True	AATAAA	-45	NA	106680022	106672373	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098_106679286_106679841
transcript_17030.known	chr11	-	3559	13	FSM	ENSMUSG00000020719.15	ENSMUST00000021062.12	3559	13	0	0	0	0	multi-exon	FALSE	canonical	3	3830	junction_8	158.443711526277	3652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTTCATTTATTTATTC	9616	False	NA	-8	True	AATAAA	-18	NA	106679358	106671180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
transcript_17031.known	chr11	-	3593	12	FSM	ENSMUSG00000020719.15	ENSMUST00000133426.8	3593	12	0	0	0	0	multi-exon	FALSE	canonical	3	3830	junction_7	165.368159266449	2632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAGTGAAATTGTACTT	9654	False	NA	-9	True	AATAAA	-45	NA	106679320	106672373	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_106673083_106673294_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
transcript_17032.known	chr11	-	879	4	FSM	ENSMUSG00000020719.15	ENSMUST00000127481.8	879	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2039.68630485725	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCAATATGGAAGTAATGT	9660	False	NA	NA	False	NA	NA	NA	106679314	106672801	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_106673083_106673294_106673511_106677734_106677901_106679098
transcript_17033.known	chr11	+	2696	20	FSM	ENSMUSG00000018372.14	ENSMUST00000018516.11	2696	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	15.3330523078346	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTTACTGCTTTTGAAT	5119	False	NA	10	True	AATAAA	-12	NA	106680100	106709679	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_106680204_106681556_106681686_106683302_106683411_106686948_106687060_106690869_106690970_106692288_106692405_106695818_106695948_106697061_106697256_106700017_106700128_106700453_106700584_106702021_106702176_106703221_106703362_106704586_106704689_106705429_106705563_106706293_106706464_106706559_106706635_106707478_106707632_106708659_106708807_106709021_106709094_106709359
transcript_17037.nic	chr11	-	2022	11	NIC	ENSMUSG00000018362.15	novel	2054	11	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	138	junction_10	946.562882221778	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGTTTTCTTAATTGA	9677	False	NA	NA	False	AATAAA	-27	NA	106890356	106879454	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882953_106883428_106883518_106887334_106887473_106888063_106888141_106890184
transcript_17038.known	chr11	-	2054	11	FSM	ENSMUSG00000018362.15	ENSMUST00000018506.13	2054	11	0	0	0	0	multi-exon	FALSE	canonical	3	2002	junction_5	417.039386629129	1160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGTTTTCTTAATTGA	9666	False	NA	NA	False	AATAAA	-27	NA	106890367	106879454	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882953_106883428_106883518_106887334_106887473_106888063_106888162_106890184
transcript_17039.known	chr11	-	1843	10	FSM	ENSMUSG00000018362.15	ENSMUST00000145331.8	1843	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	1279.26507644134	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGTTTTCTTAATTGA	9767	False	NA	NA	False	AATAAA	-27	NA	106890266	106879454	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882953_106887334_106887473_106888063_106888141_106890184
transcript_1704.known	chr1	-	708	6	FSM	ENSMUSG00000026107.12	ENSMUST00000185534.2	708	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	22.105203007437	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTTTTATATTTTTGGT	NA	False	NA	NA	False	NA	NA	NA	51517558	51510300	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_51510571_51511487_51511540_51512164_51512241_51513692_51513765_51516636_51516776_51517459
transcript_17040.known	chr11	+	1677	5	FSM	ENSMUSG00000078607.7	ENSMUST00000140447.4	1677	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.5	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAAGCACCTGGCTTTGCT	NA	False	NA	NA	False	AGTAAA	-16	NA	106916506	106921264	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_106916580_106916696_106916796_106918635_106919095_106919191_106919384_106920410
transcript_17042.known	chr11	-	11488	28	FSM	ENSMUSG00000040481.18	ENSMUST00000057892.15	11488	28	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_24	20.9549781940023	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTGTCAGGTCAGATC	NA	False	NA	-6	True	AATAAA	-22	NA	107022748	106923906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_106926666_106931051_106931239_106933500_106933586_106934458_106934652_106937825_106938170_106943614_106943841_106944048_106944132_106945281_106946145_106946697_106946933_106949459_106949678_106951297_106951407_106952509_106952662_106953361_106953609_106956493_106956537_106956771_106956923_106957952_106958082_106959100_106959226_106963508_106965817_106967347_106967528_106968485_106968625_106969345_106969476_106971548_106971681_106972041_106972398_106973338_106973527_106986541_106986752_106990391_106990616_107001638_107002462_107022099
transcript_17045.known	chr11	-	3098	18	FSM	ENSMUSG00000018433.15	ENSMUST00000106757.8	3098	18	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_5	109.451004980994	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAATGAAAATGTCTCTC	1101	False	NA	NA	False	TATAAA	-12	NA	107080207	107057488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_107058468_107059107_107059216_107061917_107062011_107062440_107062520_107064035_107064228_107064429_107064556_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
transcript_17046.known	chr11	-	3158	18	FSM	ENSMUSG00000018433.15	ENSMUST00000018577.8	3158	18	0	0	0	0	multi-exon	FALSE	canonical	3	283	junction_14	59.6645176908376	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAATGAAAATGTCTCTC	1101	False	NA	NA	False	TATAAA	-12	NA	107080207	107057488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_107058468_107059107_107059216_107061917_107062011_107062440_107062520_107064035_107064288_107064429_107064556_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
transcript_1705.known	chr1	-	680	6	FSM	ENSMUSG00000026107.12	ENSMUST00000188051.7	680	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	22.4997777766804	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGGTTTGTTGAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	51517584	51510287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_51510571_51511487_51511540_51512164_51512241_51513692_51513765_51516636_51516776_51517526
transcript_17057.nic	chr11	-	2042	14	ISM	ENSMUSG00000018433.15	ENSMUST00000018577.8	3158	18	21	6383	-8	5490	5prime_fragment	FALSE	canonical	3	283	junction_10	55.5226911340691	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCGCTCTCTCTCTCTCTC	1122	False	NA	NA	False	ATTAAA	-18	NA	107080186	107063871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_107064288_107064429_107064556_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
transcript_17059.nic	chr11	-	706	6	ISM	ENSMUSG00000018433.15	ENSMUST00000106757.8	3098	18	21	15137	-8	-3264	5prime_fragment	FALSE	canonical	3	283	junction_2	76.478493709016	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGTTAAACCAAATTTTAC	1122	False	NA	NA	False	AATACA	-27	NA	107080186	107072625	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
transcript_17060.nic	chr11	-	734	4	ISM	ENSMUSG00000018433.15	ENSMUST00000106757.8	3098	18	21	17907	-8	1970	5prime_fragment	FALSE	canonical	3	456	junction_3	16.779617264871	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCCTAATTAAATCCCACT	1122	False	NA	NA	False	NA	NA	NA	107080186	107075395	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_107075715_107077460_107077518_107077634_107077749_107079942
transcript_17061.known	chr11	+	695	3	FSM	ENSMUSG00000087596.2	ENSMUST00000129501.2	695	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATGCATTGTAAAAAATT	NA	False	NA	NA	False	AAGAAA	-9	NA	107048233	107057976	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_107048351_107055846_107055988_107057539
transcript_17062.known	chr11	-	6329	10	FSM	ENSMUSG00000040430.19	ENSMUST00000103064.10	6329	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	23.9495354216649	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGAGTGTAGCATCCTCT	NA	False	NA	-1	True	AATAAA	-17	NA	107361525	107098717	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_107103485_107107503_107107623_107117056_107117121_107125172_107125329_107142847_107142944_107187024_107187097_107211618_107211627_107212412_107212502_107228237_107228387_107360716
transcript_17070.known	chr11	+	470	2	FSM	ENSMUSG00000086298.2	ENSMUST00000154414.2	470	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTTCACCCATCCCGTGA	NA	False	NA	NA	False	NA	NA	NA	107228875	107235630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_107229048_107235332
transcript_17071.known	chr11	+	367	2	FSM	ENSMUSG00000087683.2	ENSMUST00000129139.2	367	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGAATCCTCTGACATCT	NA	False	NA	NA	False	AATAAA	-18	NA	107277808	107279797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_107277929_107279550
transcript_17072.known	chr11	+	876	2	FSM	ENSMUSG00000087113.2	ENSMUST00000136927.2	876	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGTGTCGTGCGTTGGT	NA	False	NA	NA	False	AATAAA	-20	NA	107319101	107326512	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_107319311_107325845
transcript_17076.known	chr11	+	1311	10	FSM	ENSMUSG00000020720.14	ENSMUST00000106750.5	1311	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	899.695133549878	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCTGGATGCTTTTAGAA	NA	False	NA	-46	True	NA	NA	NA	107370402	107388559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_107370511_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107384342_107385455_107385631_107386513_107386592_107388349
transcript_17079.known	chr11	+	1904	11	FSM	ENSMUSG00000020720.14	ENSMUST00000021063.13	1904	11	0	0	0	0	multi-exon	FALSE	canonical	3	2673	junction_3	110.503800839609	5797	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTGCGTGGAGTTTGCT	NA	False	NA	NA	False	NA	NA	NA	107370309	107388999	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107384342_107385455_107385631_107386513_107386592_107388349
transcript_17080.known	chr11	+	1955	11	FSM	ENSMUSG00000020720.14	ENSMUST00000106752.10	1955	11	0	0	0	0	multi-exon	FALSE	canonical	2	44	junction_10	842.895657836722	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGGGTTCCAGACCTGAG	NA	False	NA	NA	False	ATTAAA	-16	NA	107370353	107395188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107384342_107385455_107385631_107386513_107386592_107394443
transcript_17087.known	chr11	+	687	5	FSM	ENSMUSG00000020721.17	ENSMUST00000141730.8	687	5	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	30.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGAGCATTTAGAGTGAG	NA	False	NA	NA	False	NA	NA	NA	107438755	107468982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_107438808_107440171_107440228_107446344_107446402_107465763_107465992_107468688
transcript_1709.known	chr1	-	2838	6	FSM	ENSMUSG00000026107.12	ENSMUST00000027279.12	2838	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_5	8.25590697622012	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATATAGGAGTAACAGAACT	NA	False	NA	-1	True	AATAAA	-32	NA	51517558	51508646	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_51510571_51511487_51511540_51512164_51512241_51513692_51513765_51516636_51516776_51516983
transcript_17093.known	chr11	+	6218	32	FSM	ENSMUSG00000020721.17	ENSMUST00000075012.8	6218	32	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_15	38.7019615966116	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTGTTACATATGTTTG	NA	False	NA	9	True	AATAAA	-17	NA	107438785	107577769	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_107438808_107440171_107440228_107465763_107465992_107468688_107468726_107483531_107483657_107485964_107486022_107489975_107490028_107491101_107491178_107493135_107493335_107493761_107493870_107494891_107495190_107504676_107504945_107509808_107510143_107510909_107511041_107517360_107517541_107518175_107518281_107522997_107523177_107525805_107525925_107526991_107527138_107528605_107528754_107536875_107537060_107539937_107540167_107546869_107547075_107551920_107551973_107552667_107552859_107554433_107554642_107556824_107556905_107560860_107561498_107561872_107562108_107563354_107563872_107576116_107576370_107577210
transcript_17095.nnic	chr11	-	722	3	Intergenic	novelGene_13	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_2	1.5	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGCTGTTAAATGGTTCT	NA	False	NA	NA	False	AATAAA	-21	NA	107438297	107437335	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr11_-_107437494_107437607_107437850_107437975
transcript_17096.known	chr11	-	1249	4	FSM	ENSMUSG00000020722.6	ENSMUST00000021065.6	1249	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.942809041582063	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTTTTTCCCATATGCC	NA	False	NA	NA	False	AATAAA	-17	NA	107607348	107594043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_107594717_107595130_107595269_107596602_107596678_107606985
transcript_1710.known	chr1	-	4767	31	FSM	ENSMUSG00000018417.15	ENSMUST00000018561.14	4767	31	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_21	30.4396671028665	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCATTTGCTGGATTACAA	NA	False	NA	NA	False	AATAAA	-16	NA	51955087	51789152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_51790456_51794801_51794930_51796263_51796417_51797034_51797168_51799453_51799561_51801650_51801786_51803048_51803124_51805980_51806068_51807808_51807896_51808162_51808250_51809944_51810014_51812391_51812542_51813470_51813565_51815362_51815564_51817479_51817707_51818719_51818921_51821128_51821192_51823595_51823701_51832798_51832865_51833470_51833558_51836157_51836277_51836546_51836695_51838690_51838795_51840342_51840442_51852161_51852226_51859299_51859347_51863255_51863361_51873607_51873703_51902477_51902594_51922241_51922386_51954919
transcript_17103.known	chr11	+	3453	27	FSM	ENSMUSG00000020728.18	ENSMUST00000150863.9	3453	27	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_14	12.2793543958426	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTTTTCTTTTTACATT	NA	False	NA	NA	False	ATTAAA	-18	NA	108316017	108751441	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_108316178_108324951_108325066_108328031_108328223_108331249_108331423_108361117_108361209_108362842_108362921_108377418_108377467_108377738_108377817_108389069_108389157_108393891_108393992_108397364_108397484_108399047_108399192_108409504_108409660_108409955_108410086_108410721_108410815_108414144_108414205_108422211_108422292_108461113_108461250_108481829_108481938_108497038_108497222_108555321_108555553_108643403_108643467_108648495_108648646_108699475_108699566_108746608_108746711_108750168_108750234_108751017
transcript_17113.nic	chr11	+	961	6	ISM	ENSMUSG00000020728.18	ENSMUST00000150863.9	3453	27	-63	388430	-63	-608	5prime_fragment	FALSE	canonical	3	43	junction_4	6.34350061086148	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTATTAAACGTTTATTA	NA	False	NA	NA	False	ATTAAA	-21	NA	108315954	108363011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_108316178_108324951_108325066_108328031_108328223_108331249_108331423_108361117_108361209_108362842
transcript_17119.nic	chr11	+	766	5	NIC	ENSMUSG00000020728.18	novel	1437	6	NA	NA	-33	-608	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	23.4360832905159	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTATTAAACGTTTATTA	NA	False	NA	NA	False	ATTAAA	-21	NA	108316058	108363011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_108316178_108324951_108325066_108328031_108328223_108331249_108331423_108362842
transcript_17120.known	chr11	+	4260	11	FSM	ENSMUSG00000000142.16	ENSMUST00000052915.14	4260	11	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	12.1720992437624	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGCCTCATCTTTGGAT	NA	False	NA	7	True	ATTAAA	-19	NA	108811174	108841609	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_108811388_108813977_108814929_108822264_108822406_108830137_108830241_108832728_108832870_108833016_108833523_108833760_108833956_108834481_108834713_108835335_108835432_108836705_108836874_108840094
transcript_17122.nnic	chr11	-	1020	12	NNC	ENSMUSG00000020599.14	novel	2313	17	NA	NA	8468	7970	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	9.52855647145737	21	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGTTTGTTTGATTTTAT	NA	False	NA	NA	False	TTTAAA	-42	NA	109180424	109138857	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_109139004_109139804_109139867_109140852_109140883_109150661_109150725_109159748_109159831_109164101_109164179_109166086_109166146_109166404_109166457_109166645_109166753_109167395_109167447_109172274_109172372_109180230
transcript_17123.nnic	chr11	-	1032	12	NNC	ENSMUSG00000020599.14	novel	2313	17	NA	NA	8429	7970	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	5.1889902519383	64	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGTTTGTTTGATTTTAT	NA	False	NA	NA	False	TTTAAA	-42	NA	109180463	109138857	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_109139004_109139804_109139867_109140852_109140883_109150661_109150725_109159748_109159831_109164101_109164179_109166086_109166146_109166404_109166457_109166645_109166753_109167395_109167447_109172274_109172372_109180257
transcript_17124.nic	chr11	-	1076	12	ISM	ENSMUSG00000020599.14	ENSMUST00000106706.8	2313	17	-121	12975	-58	7970	5prime_fragment	FALSE	canonical	2	4	junction_11	8.5753827951086	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGTTTGTTTGATTTTAT	NA	False	NA	NA	False	TTTAAA	-42	NA	109189013	109138857	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_109139004_109139804_109139867_109140852_109140883_109150661_109150725_109159748_109159831_109164101_109164179_109166086_109166146_109166404_109166457_109166645_109166753_109167395_109167447_109172274_109172372_109188763
transcript_17126.nnic	chr11	-	1797	11	NNC	ENSMUSG00000020599.14	novel	3464	10	NA	NA	8481	-1546	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	10.0776981498753	19	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTCTTTATTATTCTT	NA	False	NA	NA	False	NA	NA	NA	109180411	109148373	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_109148571_109148676_109149526_109150652_109150725_109159748_109159831_109164101_109164179_109166086_109166146_109166404_109166457_109166645_109166753_109167395_109167447_109172274_109172372_109180257
transcript_17132.known	chr11	+	6160	4	FSM	ENSMUSG00000020611.15	ENSMUST00000020930.14	6160	4	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_2	46.1976430375211	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGTAGCACGACGTTATT	NA	False	NA	12	True	AATAAA	-14	NA	109253656	109292195	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_109254083_109256361_109256589_109283171_109283223_109286739
transcript_17133.known	chr11	+	914	3	FSM	ENSMUSG00000020611.15	ENSMUST00000106702.4	914	3	0	0	0	0	multi-exon	TRUE	canonical	3	100	junction_2	132.5	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTATGTCCTCTTTTGCA	NA	False	NA	9	True	AATAAA	-18	NA	109253656	109271301	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_109254083_109256361_109256589_109271040
transcript_17137.known	chr11	-	2765	2	FSM	ENSMUSG00000056687.10	ENSMUST00000070956.4	2765	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAGAAGAAGAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	109254480	109245603	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_109247820_109253931
transcript_17148.known	chr11	-	2354	6	FSM	ENSMUSG00000041920.15	ENSMUST00000070872.13	2354	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	8.5463442476886	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACCCAAAAAACAAAAAAAAC	2874	False	NA	NA	False	NA	NA	NA	109364120	109343551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_109344221_109345688_109346505_109349302_109349432_109350624_109350769_109354135_109354375_109363763
transcript_17149.nnic	chr11	-	2266	6	NNC	ENSMUSG00000041920.15	novel	2354	6	NA	NA	-1506	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_5	8.20731381147328	262	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACCCAAAAAACAAAAAAAAC	1064	False	NA	NA	False	NA	NA	NA	109365930	109343551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_109344221_109345688_109346505_109349302_109349432_109350624_109350769_109354135_109354375_109365661
transcript_1715.known	chr1	-	5052	30	FSM	ENSMUSG00000018417.15	ENSMUST00000046390.14	5052	30	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_8	59.0883173807801	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCCGAAGTCTTCGTGTT	NA	False	NA	16	True	GATAAA	-5	NA	51955230	51788923	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_51790456_51794801_51794930_51796263_51796417_51797034_51797168_51799453_51799561_51801650_51801786_51803048_51803124_51805980_51806068_51808162_51808250_51809944_51810014_51812391_51812542_51813470_51813565_51815362_51815564_51817479_51817707_51818719_51818921_51821128_51821192_51823595_51823701_51832798_51832865_51833470_51833558_51836157_51836277_51836546_51836695_51838690_51838795_51840342_51840442_51852161_51852226_51859299_51859347_51863255_51863361_51873607_51873703_51902477_51902594_51922241_51922386_51954919
transcript_17156.known	chr11	+	1152	2	FSM	ENSMUSG00000020610.18	ENSMUST00000154875.2	1152	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACGGAGTGCTTGTAACAG	NA	False	NA	NA	False	AATATA	-15	NA	109330981	109343639	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_109331082_109342587
transcript_17158.known	chr11	+	1846	6	FSM	ENSMUSG00000020610.18	ENSMUST00000125108.2	1846	6	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	32.499846153482	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAGAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	109316807	109321871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_109316857_109317311_109317402_109317795_109317924_109319627_109319911_109320489_109320664_109320749
transcript_17159.known	chr11	+	1832	8	FSM	ENSMUSG00000020610.18	ENSMUST00000103061.3	1832	8	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_3	12.4638252063927	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTGGCCCTAGGAAT	NA	False	NA	19	True	AATAAA	-15	NA	109317051	109327815	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_109317402_109317795_109317924_109319627_109319911_109320489_109320664_109320749_109320879_109324715_109324880_109325405_109325583_109327388
transcript_17161.known	chr11	-	2050	13	FSM	ENSMUSG00000041895.16	ENSMUST00000103060.10	2050	13	0	0	0	0	multi-exon	FALSE	canonical	1	33	junction_5	23.2491039253846	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGAGTTGTTTACATTT	NA	False	NA	-6	True	AATAAA	-15	NA	109502258	109464156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_109464794_109467882_109467984_109468400_109468520_109469116_109469225_109470452_109470618_109473197_109473306_109473952_109474024_109474900_109474994_109475920_109476019_109487928_109488026_109494498_109494669_109496710_109496794_109502058
transcript_17166.known	chr11	-	3338	12	FSM	ENSMUSG00000041895.16	ENSMUST00000047186.10	3338	12	0	0	0	0	multi-exon	FALSE	canonical	1	33	junction_4	24.2817484087354	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	109502258	109465957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_109467984_109468400_109468520_109469116_109469225_109470452_109470618_109473197_109473306_109473952_109474024_109474900_109474994_109475920_109476019_109487928_109488026_109494498_109494669_109496710_109496794_109502058
transcript_17169.known	chr11	-	1220	8	FSM	ENSMUSG00000041895.16	ENSMUST00000106689.2	1220	8	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_2	3.73619909446343	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTCGAGCTTCACGGGG	NA	False	NA	NA	False	ATTAAA	-20	NA	109502258	109472897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_109473306_109473952_109474024_109474900_109474994_109475920_109476019_109487928_109488026_109494498_109494669_109496710_109496794_109502058
transcript_1717.nic	chr1	-	1147	3	ISM	ENSMUSG00000018417.15	ENSMUST00000151525.8	3045	7	-61	51964	-32	0	5prime_fragment	FALSE	canonical	3	305	junction_2	6	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAAAAGAAAGAAAGAA	NA	False	NA	NA	False	TATAAA	-13	NA	51955132	51901803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_51902594_51922241_51922386_51954919
transcript_17173.known	chr11	+	3513	12	FSM	ENSMUSG00000020612.17	ENSMUST00000106677.8	3513	12	0	0	0	0	multi-exon	TRUE	canonical	3	3	junction_1	598.701238977939	571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGAATCAGTTTTTCTTC	NA	False	NA	20	True	AATAAA	-25	NA	109540230	109560482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_109540354_109541266_109541451_109544604_109544788_109550824_109550996_109551860_109551953_109552113_109552176_109553101_109553149_109553774_109553934_109555584_109555646_109556690_109556813_109557469_109557552_109558255
transcript_17175.known	chr11	+	3359	11	FSM	ENSMUSG00000020612.17	ENSMUST00000049527.7	3359	11	0	0	0	0	multi-exon	FALSE	canonical	3	1417	junction_9	119.858458191318	1921	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGAATCAGTTTTTCTTC	NA	False	NA	20	True	AATAAA	-25	NA	109541746	109560482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_109541900_109544604_109544788_109550824_109550996_109551860_109551953_109552113_109552176_109553101_109553149_109553774_109553934_109555584_109555646_109556690_109556813_109557469_109557552_109558255
transcript_17176.nic	chr11	-	1400	7	ISM	ENSMUSG00000020614.14	ENSMUST00000020938.8	2541	11	43689	0	-2145	0	3prime_fragment	FALSE	canonical	0	0	junction_4	1.25830573921179	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGGCTTTCTCCAAGTC	4260	False	NA	NA	False	AATAAA	-16	NA	109569393	109563751	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_109564391_109565448_109565509_109565931_109566014_109566668_109566779_109567979_109568161_109568596_109568713_109569181
transcript_17177.nic	chr11	-	1425	7	NIC	ENSMUSG00000020614.14	novel	2541	11	NA	NA	-2145	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_4	0.942809041582063	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGGCTTTCTCCAAGTC	4260	False	NA	NA	False	AATAAA	-16	NA	109569393	109563751	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_109564391_109565448_109565509_109565931_109566014_109566668_109566804_109567979_109568161_109568596_109568713_109569181
transcript_17179.nic	chr11	-	865	5	NIC	ENSMUSG00000020617.14	novel	919	5	NA	NA	-68	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	1.22474487139159	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTATGGTGGTCCCTCAC	NA	False	NA	NA	False	NA	NA	NA	109704968	109682382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_109682621_109684931_109685106_109688103_109688238_109704384_109704573_109704837
transcript_1718.known	chr1	+	2982	24	FSM	ENSMUSG00000062939.12	ENSMUST00000027277.7	2982	24	0	0	0	0	multi-exon	TRUE	canonical	3	8	junction_15	7.16402480577569	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATTTGTTTCTGGTTTT	NA	False	NA	NA	False	AATATA	-18	NA	52047401	52146343	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_52047888_52050941_52051071_52052948_52053094_52104473_52104573_52107904_52107998_52111019_52111099_52113835_52113922_52115691_52115844_52117652_52117812_52118899_52118993_52121676_52121737_52122020_52122039_52122136_52122231_52123237_52123283_52135943_52136028_52137545_52137645_52139482_52139619_52141010_52141061_52141275_52141371_52141639_52141777_52142006_52142199_52144364_52144432_52144826_52144936_52146068
transcript_17180.known	chr11	-	582	4	FSM	ENSMUSG00000020617.14	ENSMUST00000143578.2	582	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.816496580927726	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAACAATGAAATATAACG	NA	False	NA	NA	False	ATTAAA	-24	NA	109704900	109682423	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_109682621_109688103_109688238_109704384_109704573_109704837
transcript_17182.nnic	chr11	-	476	3	NNC	ENSMUSG00000020617.14	novel	2035	6	NA	NA	-68	-13689	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCTTACACGGTCCTTC	NA	False	NA	NA	False	AATAAA	-16	NA	109704968	109696112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_109696270_109704384_109704573_109704837
transcript_17184.nnic	chr11	-	491	4	NNC	ENSMUSG00000018800.15	novel	8231	39	NA	NA	62646	-2960	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_3	4.98887651569859	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGAAATTTCTTAAAGTC	2325	False	NA	NA	False	ATTAAA	-14	NA	110165802	110163154	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_110163393_110164151_110164208_110165145_110165226_110165685
transcript_17186.known	chr11	+	1869	12	FSM	ENSMUSG00000020623.12	ENSMUST00000146084.8	1869	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	29.7790763528648	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGGCATAGTATTAGTG	NA	False	NA	14	True	AGTAAA	-24	NA	110290084	110404467	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_110290252_110373364_110373432_110380970_110381020_110381587_110381640_110383338_110383459_110383721_110383839_110385120_110385173_110387164_110387293_110388722_110388801_110390208_110390349_110397531_110397578_110403614
transcript_17187.known	chr11	+	2068	12	FSM	ENSMUSG00000020623.12	ENSMUST00000020949.12	2068	12	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_7	8.31308835611224	554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGGCATAGTATTAGTG	NA	False	NA	14	True	AGTAAA	-24	NA	110289947	110404467	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_110290252_110373364_110373432_110380970_110381020_110381587_110381702_110383338_110383459_110383721_110383839_110385120_110385173_110387164_110387293_110388722_110388801_110390208_110390349_110397531_110397578_110403614
transcript_17190.known	chr11	-	870	3	FSM	ENSMUSG00000075437.5	ENSMUST00000127337.2	870	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTGTGCCTCACTGTCTT	NA	False	NA	NA	False	NA	NA	NA	112689834	112683556	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_112684094_112687265_112687370_112689605
transcript_17191.known	chr11	-	1436	3	FSM	ENSMUSG00000087259.8	ENSMUST00000136438.8	1436	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGTTGTCTTTTCTAAA	NA	False	NA	NA	False	TATAAA	-23	NA	113063903	112934720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_112935987_112958167_112958213_113063778
transcript_17192.known	chr11	-	1861	3	FSM	ENSMUSG00000087259.8	ENSMUST00000127263.8	1861	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	2	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGTTGTCTTTTCTAAA	NA	False	NA	NA	False	TATAAA	-23	NA	113092664	112934720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_112935987_112958167_112958213_113092114
transcript_17194.known	chr11	-	1802	2	FSM	ENSMUSG00000087259.8	ENSMUST00000145206.2	1802	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGTTGTCTTTTCTAAA	NA	False	NA	NA	False	TATAAA	-23	NA	113092648	112934720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_112935989_113092114
transcript_17201.nic	chr11	-	2799	10	NIC	ENSMUSG00000041654.16	novel	2688	10	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	188.939601035638	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGTTCCGTGCGATC	7745	False	NA	-2	True	AATAAA	-19	NA	113456606	113135678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456411
transcript_17202.known	chr11	-	2688	10	FSM	ENSMUSG00000041654.16	ENSMUST00000106633.10	2688	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	154.822558728882	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGTTCCGTGCGATC	7766	False	NA	-2	True	AATAAA	-19	NA	113456585	113135678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456501
transcript_17205.known	chr11	-	2664	10	FSM	ENSMUSG00000041654.16	ENSMUST00000071539.10	2664	10	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_5	113.78341999899	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGTTCCGTGCGATC	7769	False	NA	-2	True	AATAAA	-19	NA	113456582	113135678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354797_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456501
transcript_17207.nnic	chr11	-	2705	9	NIC	ENSMUSG00000041654.16	novel	2688	10	NA	NA	-36	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	193.3874026404	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGTTCCGTGCGATC	7710	False	NA	-2	True	AATAAA	-19	NA	113456641	113135678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113452831_113452951_113456501
transcript_1721.known	chr1	+	2834	23	FSM	ENSMUSG00000026104.15	ENSMUST00000186574.7	2834	23	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_12	6.78598458418965	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGATGAGTGGGAAAGCAG	3248	False	NA	NA	False	AATAAA	-16	NA	52158598	52194571	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_52158783_52159070_52159232_52161749_52161881_52162272_52162418_52165678_52165778_52171702_52171793_52174761_52174841_52176037_52176130_52176437_52176590_52178352_52178512_52179735_52179829_52182059_52182120_52183244_52183275_52183362_52183457_52184308_52184351_52186452_52186537_52187059_52187159_52188061_52188198_52189777_52189828_52190396_52190492_52191391_52191538_52193002_52193189_52194144
transcript_17211.nic	chr11	-	1289	9	ISM	ENSMUSG00000041654.16	ENSMUST00000106633.10	2688	10	-56	2679	-36	-2679	5prime_fragment	FALSE	canonical	0	0	junction_4	163.816780276014	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGTGGCATAAGGCAGGA	7710	False	NA	NA	False	AATAAA	-20	NA	113456641	113138357	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456501
transcript_17213.nic	chr11	-	1268	9	ISM	ENSMUSG00000041654.16	ENSMUST00000071539.10	2664	10	-59	2679	-36	-2679	5prime_fragment	FALSE	canonical	3	154	junction_4	120.581922359863	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGTGGCATAAGGCAGGA	7710	False	NA	NA	False	AATAAA	-20	NA	113456641	113138357	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354797_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456501
transcript_1722.known	chr1	-	1170	2	FSM	ENSMUSG00000109599.2	ENSMUST00000210323.2	1170	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTTGACACCATCCTACT	2496	False	NA	NA	False	NA	NA	NA	52152910	52147279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_52148419_52152879
transcript_17225.nnic	chr11	-	731	5	NNC	ENSMUSG00000041654.16	novel	485	5	NA	NA	-36	19776	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	182.51712248444	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGACTATCTTTTCTTAT	7710	False	NA	NA	False	ATTAAA	-14	NA	113456641	113394636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_113394911_113414291_113414451_113450336_113450376_113452831_113452951_113456501
transcript_17228.known	chr11	-	2781	11	FSM	ENSMUSG00000041654.16	ENSMUST00000042657.16	2781	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	190.932474974793	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGTTCCGTGCGATC	7757	False	NA	-2	True	AATAAA	-19	NA	113456594	113135678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354797_113354922_113413726_113413832_113414291_113414451_113450336_113450376_113452831_113452951_113456501
transcript_17229.known	chr11	+	1537	3	FSM	ENSMUSG00000047904.7	ENSMUST00000106630.2	1537	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	4	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTTCCAGCATCTGTCTT	NA	False	NA	NA	False	AAGAAA	-32	NA	113510301	113516721	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_113510449_113514992_113516076_113516414
transcript_1723.known	chr1	-	432	1	FSM	ENSMUSG00000078291.2	ENSMUST00000105087.2	432	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGTCCAGATGGCTAAT	NA	False	NA	NA	False	NA	NA	NA	52130225	52129793	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_52129800_52130200
transcript_17230.known	chr11	+	2143	2	FSM	ENSMUSG00000047904.7	ENSMUST00000146390.3	2143	2	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAAGTAAGGTGGTTTTG	NA	False	NA	NA	False	NA	NA	NA	113510167	113516854	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_113510449_113514992
transcript_17231.known	chr11	+	3935	14	FSM	ENSMUSG00000018661.18	ENSMUST00000018805.15	3935	14	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_2	35.2900073021332	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCATTTTTAAGAGGCTCTT	NA	False	NA	NA	False	ATTAAA	-15	NA	113539994	113553773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_113540702_113542670_113542913_113543050_113543233_113543367_113543539_113544729_113544887_113545793_113546005_113546685_113547475_113547828_113547976_113548200_113548363_113549304_113549433_113550094_113550204_113551768_113551879_113551965_113552045_113553032
transcript_17236.known	chr11	-	2619	3	FSM	ENSMUSG00000041629.8	ENSMUST00000120194.2	2619	3	0	0	0	0	multi-exon	FALSE	canonical	3	1327	junction_2	35.5	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCCTAATTGGTTGGTT	NA	False	NA	-8	True	ATTAAA	-24	NA	113574981	113552144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_113554370_113568129_113568230_113574687
transcript_17239.nnic	chr11	-	1102	3	NNC	ENSMUSG00000041629.8	novel	2619	3	NA	NA	203	-1588	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_2	675	592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAGTTTCCATGGGGAAAA	NA	False	NA	-16	True	AATAAA	-14	NA	113574778	113553732	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_113554370_113568129_113568230_113574413
transcript_17243.nnic	chr11	-	808	3	NNC	ENSMUSG00000041629.8	novel	2619	3	NA	NA	203	-1882	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_2	675	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGTCGGCTTTCCGTCT	NA	False	NA	-22	True	TTTAAA	-27	NA	113574778	113554026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_113554370_113568129_113568230_113574413
transcript_17249.known	chr11	+	2062	5	FSM	ENSMUSG00000041623.18	ENSMUST00000106621.4	2062	5	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_1	30.335622624235	458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTCTTCTTTTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	113575272	113585473	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_113575538_113578599_113580048_113582554_113582660_113583220_113583329_113585337
transcript_1725.known	chr1	+	3396	9	FSM	ENSMUSG00000043015.16	ENSMUST00000165859.8	3396	9	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	7.49061913328932	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGGGCTCCGAGTCAGTG	NA	False	NA	9	True	ATTAAA	-20	NA	52669861	52691078	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_52670011_52676523_52676640_52679987_52680220_52680329_52680403_52681477_52681572_52682280_52682396_52684419_52684646_52687908_52688086_52688864
transcript_17251.known	chr11	+	2196	5	FSM	ENSMUSG00000041623.18	ENSMUST00000042227.15	2196	5	0	0	0	0	multi-exon	TRUE	canonical	3	41	junction_1	114.630929508575	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTCTTCTTTTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	113575237	113585473	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_113575637_113578599_113580048_113582554_113582660_113583220_113583329_113585337
transcript_17253.nic	chr11	+	2656	5	NIC	ENSMUSG00000041623.18	novel	2196	5	NA	NA	1	0	intron_retention	TRUE	canonical	3	43	junction_1	113.778293184597	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTCTTCTTTTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	113575238	113585473	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_113576098_113578599_113580048_113582554_113582660_113583220_113583329_113585337
transcript_1727.known	chr1	+	2023	9	FSM	ENSMUSG00000043015.16	ENSMUST00000185483.7	2023	9	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	9.4794184948234	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTTAATGTTTTGATAAG	NA	False	NA	NA	False	ATTAAA	-21	NA	52669905	52689795	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_52670011_52676523_52676640_52679987_52680220_52680329_52680403_52681477_52681572_52682326_52682396_52684419_52684646_52687908_52688086_52688864
transcript_1729.known	chr1	-	5767	6	FSM	ENSMUSG00000026102.10	ENSMUST00000027271.9	5767	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	1.49666295470958	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGATTATGGGTATAAAATA	NA	False	NA	NA	False	NA	NA	NA	52856847	52824585	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_52829377_52830846_52831022_52833628_52833830_52836199_52836261_52838443_52838696_52856560
transcript_17294.known	chr11	-	1375	8	FSM	ENSMUSG00000018727.20	ENSMUST00000100248.6	1375	8	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_7	53.4469028903587	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600352	113588997	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600053
transcript_17295.known	chr11	-	1213	8	FSM	ENSMUSG00000018727.20	ENSMUST00000173655.8	1213	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	68.8879599088851	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600346	113588997	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593336_113594096_113594193_113597242_113597396_113599629_113599681_113600212
transcript_17299.nic	chr11	-	1418	8	NIC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	-146	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_7	55.2692851188707	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600989	113588997	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600647
transcript_173.known	SIRV2	-	686	5	FSM	SIRV2A	SIRV203	686	5	0	0	0	0	multi-exon	FALSE	canonical	3	2087	junction_4	259.923065540556	11778	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATTGACGTGGACGTTTC	NA	False	NA	NA	False	NA	NA	NA	5895	3665	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV2_-_3826_3966_4095_4338_4480_4687_4801_5751
transcript_17321.nic	chr11	-	1667	7	NIC	ENSMUSG00000018727.20	novel	1235	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_2	66.4646940529749	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600843	113588997	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_113589493_113590661_113590809_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600212
transcript_17325.known	chr11	-	1235	7	FSM	ENSMUSG00000018727.20	ENSMUST00000018871.8	1235	7	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	88.6372131531422	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600843	113588997	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_113589493_113590661_113590809_113593238_113593336_113594096_113594193_113597242_113597396_113599629_113599681_113600647
transcript_1734.known	chr1	+	1830	14	FSM	ENSMUSG00000041426.13	ENSMUST00000044478.7	1830	14	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_5	8.39836557781919	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAGTTCTGTCTCCAGAA	NA	False	NA	NA	False	AAAAAG	-12	NA	52884204	52960145	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_52884304_52892826_52892870_52899186_52899325_52901426_52901512_52904707_52904789_52908064_52908118_52924261_52924341_52940346_52940493_52942005_52942093_52943800_52943860_52944529_52944612_52952889_52953010_52955795_52955830_52959421
transcript_17340.known	chr11	-	1123	7	FSM	ENSMUSG00000018727.20	ENSMUST00000106617.8	1123	7	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	84.0094240745247	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113599793	113588997	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_113589493_113590661_113590740_113592881_113592922_113593238_113593336_113594096_113594193_113597242_113597396_113599629
transcript_17341.known	chr11	-	3008	2	FSM	ENSMUSG00000041598.8	ENSMUST00000053536.5	3008	2	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	0	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTAGTGTCTGACTCTTC	7363	False	NA	-2	True	ATTAAA	-15	NA	113642707	113617677	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_113620492_113642513
transcript_17347.known	chr11	+	345	5	FSM	ENSMUSG00000057322.13	ENSMUST00000082092.5	345	5	0	0	0	0	multi-exon	FALSE	canonical	3	1304	junction_1	7543.63564122102	20960	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTCCTCAGTCTC	NA	False	NA	28	True	ATTAAA	-15	NA	114559451	114563157	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_114559512_114559606_114559641_114559731_114559793_114562559_114562683_114563090
transcript_17352.known	chr11	+	371	5	FSM	ENSMUSG00000057322.13	ENSMUST00000106602.10	371	5	0	0	0	0	multi-exon	FALSE	canonical	3	6598	junction_1	5536.08152825625	115689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTCCTCAGTCTC	NA	False	NA	28	True	ATTAAA	-15	NA	114559349	114563157	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_114559436_114559606_114559641_114559731_114559793_114562559_114562683_114563090
transcript_17353.known	chr11	+	457	4	FSM	ENSMUSG00000057322.13	ENSMUST00000106599.8	457	4	0	0	0	0	multi-exon	FALSE	canonical	3	12129	junction_3	3589.14031799012	13537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTCCTCAGTCTC	NA	False	NA	28	True	ATTAAA	-15	NA	114559434	114563157	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_114559641_114559731_114559793_114562559_114562683_114563090
transcript_17354.known	chr11	+	364	5	FSM	ENSMUSG00000057322.13	ENSMUST00000077915.10	364	5	0	0	0	0	multi-exon	FALSE	canonical	3	5140	junction_1	6068.87239835375	58780	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTCCTCAGTCTC	NA	False	NA	28	True	ATTAAA	-15	NA	114559373	114563157	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_114559453_114559606_114559641_114559731_114559793_114562559_114562683_114563090
transcript_17355.known	chr11	+	3486	14	FSM	ENSMUSG00000034714.10	ENSMUST00000045779.6	3486	14	0	0	0	0	multi-exon	TRUE	canonical	3	173	junction_11	15.0937896237857	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTGCAGCTGAGTCACTT	NA	False	NA	11	True	AATAAA	-14	NA	114566256	114611803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_114566499_114577219_114577393_114581064_114581177_114587414_114587636_114592606_114592703_114593061_114593135_114598161_114598232_114598504_114598561_114599242_114599336_114599594_114599688_114600868_114601012_114601636_114601823_114602585_114602665_114609954
transcript_17359.known	chr11	+	695	3	FSM	ENSMUSG00000034714.10	ENSMUST00000141111.2	695	3	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_1	12.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCTTACCCATCCCTGAAG	NA	False	NA	NA	False	NA	NA	NA	114566341	114581429	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_114566499_114577219_114577393_114581064
transcript_17360.nnic	chr11	+	722	3	NNC	ENSMUSG00000034714.10	novel	695	3	NA	NA	38	-10366	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.5	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCACTCTTGGCTTCATAAG	NA	False	NA	NA	False	AATAAA	-23	NA	114566294	114571063	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_114566499_114569762_114569895_114570677
transcript_17364.known	chr11	+	2247	8	FSM	ENSMUSG00000034706.17	ENSMUST00000144872.2	2247	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.87139303460597	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATGAATCTCTCATCTCT	NA	False	NA	NA	False	NA	NA	NA	114627866	114644895	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_114628021_114629441_114629585_114631242_114631357_114635126_114635267_114635880_114636004_114641163_114641388_114642611_114642748_114643682
transcript_17365.nnic	chr11	+	1393	5	NNC	ENSMUSG00000034706.17	novel	597	3	NA	NA	-1080	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3.5	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTGTCATGTGTGCCAT	NA	False	NA	NA	False	ATTAAA	-20	NA	114642421	114648715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_114642536_114642611_114642748_114643682_114643830_114645060_114645289_114647947
transcript_17366.nnic	chr11	+	631	3	NNC	ENSMUSG00000034706.17	novel	597	3	NA	NA	-1080	-832	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4.5	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGAGCCTCTCAGTTGAAA	NA	False	NA	NA	False	AGTAAA	-20	NA	114642421	114644063	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_114642536_114642611_114642748_114643682
transcript_17367.known	chr11	+	1286	5	FSM	ENSMUSG00000010021.14	ENSMUST00000138340.2	1286	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.06155281280883	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCTGTGTTGGGAGCTGTG	3213	False	NA	NA	False	AATAAA	-19	NA	114678728	114681565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_114678760_114678899_114678988_114679969_114680368_114680584_114680745_114680956
transcript_17369.nic	chr11	+	2535	4	ISM	ENSMUSG00000051043.17	ENSMUST00000053361.12	3667	5	-714	3521	-24	0	5prime_fragment	FALSE	canonical	3	20	junction_1	8.2192186706253	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTTGCTTTGGGCTTGTG	214	False	NA	NA	False	AATAAA	-19	NA	114741953	114759922	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_114742713_114754292_114755373_114757450_114757546_114759321
transcript_17371.known	chr11	+	2210	9	FSM	ENSMUSG00000020732.14	ENSMUST00000021076.6	2210	9	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_2	1.36358901432946	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGACCGGTTTTTCCCCC	NA	False	NA	NA	False	ATTAAA	-23	NA	115044982	115053062	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_115045118_115047752_115047864_115048776_115048819_115049330_115049398_115049484_115049538_115050501_115050568_115051124_115051182_115051263_115051341_115051460
transcript_17377.known	chr11	+	1925	6	FSM	ENSMUSG00000020733.4	ENSMUST00000021077.4	1925	6	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	12.6964561984831	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCCTCTGTGTCCTCCTTT	NA	False	NA	10	True	NA	NA	NA	115054166	115072007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_115054778_115067176_115067339_115068049_115068204_115069875_115069917_115070832_115070923_115071140
transcript_17385.known	chr11	-	386	3	FSM	ENSMUSG00000015542.18	ENSMUST00000134769.2	386	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	42.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTCCACCCTCCCTTTCT	NA	False	NA	NA	False	NA	NA	NA	115078102	115075803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115075943_115077574_115077664_115077944
transcript_17386.known	chr11	-	1204	7	FSM	ENSMUSG00000015542.18	ENSMUST00000103040.11	1204	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	40.7553677446297	1291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCCTTGTTTGTTCACC	NA	False	NA	-5	True	AGTAAA	-16	NA	115078216	115073657	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115074092_115074180_115074276_115074450_115074511_115075308_115075453_115075832_115075943_115077574_115077664_115077944
transcript_17387.known	chr11	-	1948	12	FSM	ENSMUSG00000018861.9	ENSMUST00000021078.3	1948	12	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_7	15.1766458254911	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATGGCTGATAGCTACCA	NA	False	NA	0	True	AATAAA	-17	NA	115167876	115158849	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115159281_115159403_115159575_115160270_115160443_115160522_115160723_115160840_115160926_115161148_115161257_115162087_115162190_115162482_115162597_115162702_115162826_115163012_115163109_115166904_115167009_115167634
transcript_17388.nnic	chr11	-	1778	12	NNC	ENSMUSG00000018861.9	novel	1948	12	NA	NA	-191	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_11	32.3513766360558	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATGGCTGATAGCTACCA	NA	False	NA	0	True	AATAAA	-17	NA	115168067	115158849	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_115159281_115159403_115159575_115160270_115160443_115160522_115160723_115160840_115160926_115161148_115161257_115162087_115162190_115162482_115162597_115162702_115162826_115163012_115163109_115166904_115167009_115167995
transcript_1739.known	chr1	+	1704	12	FSM	ENSMUSG00000041426.13	ENSMUST00000159352.8	1704	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	29.0121091845947	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGTAAAAGTTCTGTCTC	NA	False	NA	NA	False	AAAAAG	-7	NA	52884171	52960140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_52884304_52892826_52892870_52899186_52899325_52901426_52901512_52904707_52904789_52908064_52908118_52924261_52924341_52940346_52940493_52942005_52942093_52943800_52943860_52944529_52944612_52959421
transcript_17394.known	chr11	-	4951	6	FSM	ENSMUSG00000044788.11	ENSMUST00000056153.8	4951	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	1.6	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGGTATTGTCCCAATAAA	429	False	NA	NA	False	AATGAA	-1	NA	115188340	115170447	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115174482_115175025_115175206_115176124_115176313_115176943_115177125_115187363_115187531_115188139
transcript_17398.known	chr11	-	3236	19	FSM	ENSMUSG00000034586.15	ENSMUST00000044152.13	3236	19	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_16	3.67045259092421	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTGTGTCTCTGTACAT	8697	False	NA	0	True	AATAAA	-15	NA	115258545	115238532	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115239359_115239625_115239785_115239911_115240004_115240747_115240829_115241317_115241425_115241744_115241973_115243410_115243576_115245225_115245305_115245411_115245564_115245850_115245942_115246119_115246261_115247190_115247248_115247445_115247669_115249495_115249613_115249802_115249910_115250520_115250635_115251147_115251319_115252464_115252615_115258369
transcript_17399.known	chr11	-	3276	19	FSM	ENSMUSG00000034586.15	ENSMUST00000106542.9	3276	19	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_16	3.88928569404159	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTGTGTCTCTGTACAT	8660	False	NA	0	True	AATAAA	-15	NA	115258582	115238532	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115239359_115239625_115239785_115239911_115240004_115240747_115240829_115241317_115241425_115241744_115241973_115243410_115243576_115245225_115245305_115245411_115245564_115245850_115245942_115246119_115246261_115247190_115247248_115247445_115247669_115249495_115249613_115249802_115249910_115250520_115250638_115251147_115251319_115252464_115252615_115258369
transcript_17401.known	chr11	+	749	6	FSM	ENSMUSG00000018858.16	ENSMUST00000103036.5	749	6	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_1	353.082766501	1004	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTTTCCAGTGAGAGCT	NA	False	NA	16	True	AATAAA	-16	NA	115294582	115301745	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_115294700_115297376_115297414_115300305_115300366_115300885_115300969_115301057_115301228_115301463
transcript_17413.known	chr11	+	513	2	FSM	ENSMUSG00000018858.16	ENSMUST00000134386.2	513	2	0	0	0	0	multi-exon	FALSE	canonical	3	1124	junction_1	0	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCACAGGAGCCTGTTTC	NA	False	NA	5	True	AATAAA	-5	NA	115300985	115301734	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_115301228_115301463
transcript_1742.known	chr1	+	736	7	FSM	ENSMUSG00000041426.13	ENSMUST00000161125.8	736	7	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_5	9.8488578017961	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCGGGATGTATGTCACA	NA	False	NA	NA	False	AATAAA	-22	NA	52884202	52924496	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_52884304_52892826_52892870_52899186_52899325_52901426_52901512_52904707_52904789_52908064_52908118_52924261
transcript_1743.nnic	chr1	-	959	2	NNC	ENSMUSG00000043629.13	novel	3641	2	NA	NA	-308	290	at_least_one_novel_splicesite	TRUE	canonical	3	24	junction_1	0	160	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAACATAAAACAAAA	NA	False	NA	NA	False	TTTAAA	-39	NA	52992817	52964051	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_52964894_52992700
transcript_17435.known	chr11	-	659	6	FSM	ENSMUSG00000034566.11	ENSMUST00000073791.10	659	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	1301.70156333931	11559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGTCTCTGAGTAGATAAAT	NA	False	NA	-3	True	AATAAA	-22	NA	115310788	115306514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664_115308762_115309211_115309377_115310717
transcript_1744.known	chr1	-	3641	2	FSM	ENSMUSG00000043629.13	ENSMUST00000050567.11	3641	2	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_1	0	744	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCTCAGTCCTCATTT	680	False	NA	-5	True	AATAAA	-14	NA	52992003	52961482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_52964894_52991773
transcript_17441.known	chr11	-	510	4	FSM	ENSMUSG00000034566.11	ENSMUST00000137563.8	510	4	0	0	0	0	multi-exon	FALSE	canonical	3	2984	junction_1	272.998575494859	936	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGTCTCTGAGTAGATAAAT	NA	False	NA	-3	True	AATAAA	-22	NA	115308848	115306514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664
transcript_17442.known	chr11	-	625	6	FSM	ENSMUSG00000034566.11	ENSMUST00000043931.9	625	6	0	0	0	0	multi-exon	FALSE	canonical	3	1974	junction_5	551.930285452792	38444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGTCTCTGAGTAGATAAAT	NA	False	NA	-3	True	AATAAA	-22	NA	115310788	115306514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664_115308762_115309211_115309343_115310717
transcript_17443.known	chr11	-	682	7	FSM	ENSMUSG00000034566.11	ENSMUST00000106537.8	682	7	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_6	1501.20529353361	11401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGTCTCTGAGTAGATAAAT	NA	False	NA	-3	True	AATAAA	-22	NA	115310743	115306514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664_115308762_115309211_115309343_115310017_115310120_115310717
transcript_17444.known	chr11	+	1764	6	FSM	ENSMUSG00000016940.19	ENSMUST00000103035.10	1764	6	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_1	5.67097875150313	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGTGTCTCTCCTTCAT	3736	False	NA	28	True	NA	NA	NA	115310953	115322100	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_115311333_115312808_115312918_115315309_115315402_115318258_115318355_115320105_115320232_115321138
transcript_17445.known	chr11	-	407	3	FSM	ENSMUSG00000085651.2	ENSMUST00000144230.2	407	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTGCAGGCTTGCAGAGA	NA	False	NA	NA	False	NA	NA	NA	115354280	115352870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115353060_115353529_115353642_115354174
transcript_17447.known	chr11	+	2062	2	FSM	ENSMUSG00000045775.16	ENSMUST00000106532.4	2062	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTGCCTCTCTGTCTAA	NA	False	NA	NA	False	ATTAAA	-41	NA	115353299	115365224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_115353634_115363496
transcript_1745.known	chr1	-	3565	2	FSM	ENSMUSG00000043629.13	ENSMUST00000114492.8	3565	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCTCAGTCCTCATTT	174	False	NA	-5	True	AATAAA	-14	NA	52992509	52961482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_52964894_52992355
transcript_17452.known	chr11	+	2260	3	FSM	ENSMUSG00000057219.12	ENSMUST00000035240.7	2260	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	2.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTTGTGTGCTAGTCTCC	NA	False	NA	NA	False	ATTAAA	-22	NA	115366492	115381293	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_115366854_115366947_115367092_115379538
transcript_17453.known	chr11	+	1009	3	FSM	ENSMUSG00000057219.12	ENSMUST00000136985.8	1009	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	10	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGCAGATGCAAAGACCACA	NA	False	NA	NA	False	AAAACA	-30	NA	115366523	115374603	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_115366854_115366947_115367092_115374068
transcript_17454.known	chr11	-	858	5	FSM	ENSMUSG00000020736.13	ENSMUST00000021082.7	858	5	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_4	11.1214882097676	1346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTGGATCTTTGATGCT	NA	False	NA	-8	True	AATAAA	-19	NA	115382688	115381245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115381571_115381678_115381794_115381963_115382025_115382096_115382198_115382432
transcript_17455.known	chr11	-	836	5	FSM	ENSMUSG00000020736.13	ENSMUST00000106530.8	836	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	83.4487117935322	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTGGATCTTTGATGCT	NA	False	NA	-8	True	AATAAA	-19	NA	115382641	115381245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115381596_115381678_115381794_115381963_115382025_115382096_115382198_115382432
transcript_17456.known	chr11	-	650	5	FSM	ENSMUSG00000020737.13	ENSMUST00000139980.8	650	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	692.516064795612	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTACCGCTGTCTTTCCCT	NA	False	NA	-12	True	ATTAAA	-14	NA	115404974	115388857	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115389126_115391491_115391511_115392830_115392929_115393857_115394001_115404852
transcript_17462.known	chr11	-	696	4	FSM	ENSMUSG00000020737.13	ENSMUST00000155399.2	696	4	0	0	0	0	multi-exon	FALSE	canonical	3	1461	junction_1	143.613679323694	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACACTGGGTGTGGTGGC	NA	False	NA	NA	False	NA	NA	NA	115405197	115391207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115391511_115392830_115392929_115393857_115394001_115405045
transcript_17463.known	chr11	-	1375	5	FSM	ENSMUSG00000020737.13	ENSMUST00000021083.7	1375	5	0	0	0	0	multi-exon	FALSE	canonical	3	1461	junction_2	125.475844288851	8380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACCGTGTTTTGTCTTTCT	NA	False	NA	NA	False	AGTAAA	-19	NA	115405213	115388178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115389126_115391491_115391511_115392830_115392929_115393857_115394001_115405045
transcript_17466.known	chr11	-	911	4	FSM	ENSMUSG00000020738.17	ENSMUST00000121185.8	911	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_3	1864.33300554261	3038	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	False	NA	-51	True	AATAAA	-18	NA	115426643	115413927	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115414596_115421171_115421244_115425377_115425510_115426604
transcript_17468.known	chr11	-	1051	4	FSM	ENSMUSG00000020738.17	ENSMUST00000153892.2	1051	4	0	0	0	0	multi-exon	FALSE	canonical	3	3819	junction_1	149.312498546579	10264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	False	NA	-51	True	AATAAA	-18	NA	115427102	115413927	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115414596_115421171_115421244_115425377_115425510_115426923
transcript_17469.known	chr11	-	884	3	FSM	ENSMUSG00000020738.17	ENSMUST00000118155.8	884	3	0	0	0	0	multi-exon	FALSE	canonical	2	199	junction_1	1955	2087	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	False	NA	-51	True	AATAAA	-18	NA	115427007	115413927	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115414596_115425377_115425510_115426923
transcript_17473.known	chr11	+	2230	19	FSM	ENSMUSG00000020739.12	ENSMUST00000021085.11	2230	19	0	0	0	0	multi-exon	TRUE	canonical	3	862	junction_16	81.0315439264927	663	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAGATGGATGTTTCCAC	NA	False	NA	91	True	AATGAA	-12	NA	115455259	115474811	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
transcript_17474.known	chr11	-	3751	17	FSM	ENSMUSG00000020740.14	ENSMUST00000156173.8	3751	17	0	0	0	0	multi-exon	TRUE	canonical	3	18	junction_3	101.135564188618	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGCATCTTTCAATACAG	3381	False	NA	-2	True	AATAAA	-15	NA	115494877	115475080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115476667_115476911_115477023_115477141_115477247_115477821_115478028_115478231_115478543_115478761_115478830_115479137_115479372_115479681_115479799_115479880_115479963_115481221_115481360_115481712_115481794_115482088_115482193_115482455_115482580_115483257_115483357_115485531_115485608_115485734_115485820_115494653
transcript_17477.known	chr11	-	3816	17	FSM	ENSMUSG00000020740.14	ENSMUST00000019135.14	3816	17	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_6	42.6075385788712	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGCATCTTTCAATACAG	3381	False	NA	-2	True	AATAAA	-15	NA	115494877	115475080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115476667_115476911_115477023_115477141_115477312_115477821_115478028_115478231_115478543_115478761_115478830_115479137_115479372_115479681_115479799_115479880_115479963_115481221_115481360_115481712_115481794_115482088_115482193_115482455_115482580_115483257_115483357_115485531_115485608_115485734_115485820_115494653
transcript_17490.known	chr11	-	869	7	FSM	ENSMUSG00000020743.16	ENSMUST00000146244.8	869	7	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_4	162.572035315631	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGTATTACTACAGTGAGG	NA	False	NA	NA	False	NA	NA	NA	115503725	115499242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500475_115501242_115501309_115502728_115502861_115503610
transcript_17492.known	chr11	+	1962	5	FSM	ENSMUSG00000046756.11	ENSMUST00000058109.9	1962	5	0	0	0	0	multi-exon	TRUE	canonical	3	642	junction_4	47.0451910401053	1612	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTTGTAACTTGCCCTT	NA	False	NA	NA	False	TATAAA	-15	NA	115494750	115498862	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_115495070_115495546_115495739_115495848_115495913_115496795_115496964_115497643
transcript_17497.known	chr11	-	828	6	FSM	ENSMUSG00000020743.16	ENSMUST00000127132.8	828	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	172.877991658857	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCACCACCTTCCTCCTGG	NA	False	NA	NA	False	NA	NA	NA	115503656	115499032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115499440_115499886_115499923_115500105_115500262_115500364_115500416_115502728_115502861_115503610
transcript_17498.known	chr11	-	993	6	FSM	ENSMUSG00000020743.16	ENSMUST00000106506.8	993	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	146.078608974757	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGCCACTGGTGCAACAT	NA	False	NA	NA	False	NA	NA	NA	115503704	115498974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115499440_115499886_115499923_115500105_115500262_115500364_115500475_115502728_115502861_115503610
transcript_17499.known	chr11	-	1271	6	FSM	ENSMUSG00000020743.16	ENSMUST00000137304.8	1271	6	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_4	137.166468205608	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503753	115498743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500416_115502728_115502861_115503610
transcript_17503.known	chr11	-	1372	6	FSM	ENSMUSG00000020743.16	ENSMUST00000021087.14	1372	6	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_2	38.1030182531515	1655	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503795	115498743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500475_115502728_115502861_115503610
transcript_17524.nic	chr11	-	1510	5	NIC	ENSMUSG00000020743.16	novel	1372	6	NA	NA	-12	0	intron_retention	FALSE	canonical	3	324	junction_4	32.8129166640212	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503807	115498743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_115499440_115499886_115500262_115500364_115500475_115502728_115502861_115503610
transcript_1753.known	chr1	-	726	10	FSM	ENSMUSG00000060715.10	ENSMUST00000190748.2	726	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	21.8784521085626	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACATTCATATCTACTATAT	NA	False	NA	NA	False	AATAAA	-5	NA	53226767	53197758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_53197948_53202384_53202405_53209396_53209420_53209546_53209618_53216928_53216987_53221001_53221055_53221653_53221704_53224373_53224450_53226486_53226618_53226712
transcript_17531.known	chr11	-	621	4	FSM	ENSMUSG00000020743.16	ENSMUST00000142637.2	621	4	0	0	0	0	multi-exon	FALSE	canonical	3	324	junction_3	34.4222150491349	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCGCCTTTGCTCTCCCCA	NA	False	NA	NA	False	NA	NA	NA	115503730	115500002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115500262_115500364_115500475_115502728_115502861_115503610
transcript_17532.known	chr11	-	1656	5	FSM	ENSMUSG00000020743.16	ENSMUST00000106507.9	1656	5	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_2	39.92101576864	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503329	115498743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500475_115502728
transcript_17540.known	chr11	-	2307	7	FSM	ENSMUSG00000020744.14	ENSMUST00000021089.11	2307	7	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_6	21.3053201493586	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTGACTGCAGACCATT	NA	False	NA	-13	True	AATAAA	-17	NA	115518971	115505003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115506418_115507346_115507478_115508343_115508528_115511702_115511874_115514697_115514854_115515024_115515195_115518890
transcript_17549.known	chr11	-	1055	6	FSM	ENSMUSG00000020744.14	ENSMUST00000106503.10	1055	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	59.5973153757785	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGCGCATGCGTCTCAC	NA	False	NA	NA	False	AAAAAG	-20	NA	115518919	115506019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115506418_115507346_115507478_115511702_115511874_115514697_115514854_115515024_115515195_115518890
transcript_17554.nnic	chr11	-	1023	3	NNC	ENSMUSG00000020744.14	novel	826	5	NA	NA	655	212	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	83.5	80	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTTGTGTCACTCCTATA	6307	False	NA	-11	True	ATTAAA	-13	NA	115508076	115505807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_115506418_115507346_115507478_115507794
transcript_17558.known	chr11	-	2709	6	FSM	ENSMUSG00000059923.14	ENSMUST00000021090.14	2709	6	0	0	0	0	multi-exon	FALSE	canonical	3	859	junction_5	53.4714877294432	395	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGTCTTCATTTCTCC	4470	False	NA	-1	True	AATAAA	-19	NA	115599423	115534870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115536781_115537535_115537705_115540596_115540720_115546183_115546282_115589977_115590183_115599219
transcript_17559.known	chr11	-	483	1	FSM	ENSMUSG00000083394.3	ENSMUST00000118352.3	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	579	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTACGCAAAGAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	115615634	115615151	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115615200_115615600
transcript_17560.known	chr11	-	4929	20	FSM	ENSMUSG00000034471.13	ENSMUST00000041684.11	4929	20	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_9	9.14911860187284	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCTGTGTTTGCATCTG	4120	False	NA	-1	True	AATGAA	-18	NA	115704456	115690008	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115690904_115691185_115691409_115691491_115692968_115693106_115693246_115693373_115693476_115693554_115693666_115693824_115693914_115694037_115694099_115694183_115694306_115694407_115694670_115695301_115695397_115695524_115695634_115695906_115696016_115697129_115697261_115697359_115697456_115697544_115697691_115698089_115698188_115698664_115698717_115702712_115703209_115704339
transcript_17561.known	chr11	+	1979	11	FSM	ENSMUSG00000020781.15	ENSMUST00000021134.10	1979	11	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_1	26.8730348118704	158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTCAATACTTACAGGGG	5932	False	NA	NA	False	ATTAAA	-21	NA	115705549	115713920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_115705646_115705740_115705906_115706000_115706065_115706152_115706237_115706523_115706623_115707878_115707932_115710950_115711050_115711204_115711834_115712481_115712543_115712824_115712942_115713408
transcript_17563.known	chr11	+	3551	26	FSM	ENSMUSG00000020782.19	ENSMUST00000103032.11	3551	26	0	0	0	0	multi-exon	FALSE	canonical	3	630	junction_7	88.2626444199357	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCTGAGGACCCGTGCTT	6800	False	NA	40	True	AATAAA	-25	NA	115714874	115746606	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_115715004_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199_115736359_115737746_115737910_115737996_115738130_115738414_115738470_115739011_115739167_115740341_115740560_115740636_115740705_115740821_115740976_115741063_115741169_115741452_115741746_115741833_115741985_115742942_115743100_115743856_115743974_115744093_115744261_115744542_115744808_115745018_115745182_115745372_115745402_115745637_115745686_115745888_115745932_115746017_115746080_115746291
transcript_17566.nic	chr11	+	3553	25	NIC	ENSMUSG00000020782.19	novel	3551	26	NA	NA	-52	0	combination_of_known_junctions	TRUE	canonical	3	54	junction_22	172.677761668954	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACCTGAGGACCCGTGC	6748	False	NA	38	True	AATAAA	-23	NA	115714822	115746604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_115715004_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199_115736359_115737746_115737910_115737996_115738130_115738414_115738470_115739011_115739167_115740341_115740560_115740636_115740705_115740821_115740976_115741063_115741169_115741452_115741746_115741833_115741985_115742942_115743100_115743856_115743974_115744093_115744261_115744542_115744808_115745018_115745182_115745372_115745402_115745888_115745932_115746017_115746080_115746291
transcript_17573.known	chr11	+	847	7	FSM	ENSMUSG00000020782.19	ENSMUST00000133250.8	847	7	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	348.528215022352	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACCGAGAGCGGCAACGTG	6809	False	NA	NA	False	NA	NA	NA	115714883	115736267	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_115715004_115723487_115723745_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199
transcript_17574.nic	chr11	+	855	6	ISM	ENSMUSG00000020782.19	ENSMUST00000103032.11	3551	26	-52	10135	-52	169	5prime_fragment	FALSE	canonical	3	674	junction_1	80.564508314766	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCGTCTCAGTCAACCCC	6748	False	NA	NA	False	AGTAAA	-20	NA	115714822	115736471	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_115715004_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199
transcript_17576.known	chr11	+	451	3	FSM	ENSMUSG00000020782.19	ENSMUST00000132999.2	451	3	0	0	0	0	multi-exon	FALSE	canonical	3	906	junction_2	37	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCTGAGGACCCGTGCTT	NA	False	NA	40	True	AATAAA	-25	NA	115745857	115746606	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_115745932_115746017_115746080_115746291
transcript_17581.known	chr11	+	3654	11	FSM	ENSMUSG00000020755.10	ENSMUST00000140991.2	3654	11	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_4	19.7585424563656	1131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTTGGTTTTGTGGAGT	44	False	NA	7	True	NA	NA	NA	115824107	115857551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_115824608_115826191_115826302_115828835_115828884_115842792_115842836_115848186_115848276_115851325_115851418_115852181_115852243_115852564_115852617_115853319_115853379_115854768_115854854_115855036
transcript_1759.known	chr1	-	646	9	FSM	ENSMUSG00000060715.10	ENSMUST00000072235.10	646	9	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	9.08209089362136	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACAGAATGGAATTGCTT	NA	False	NA	NA	False	AATAAA	-28	NA	53226795	53197735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_53197948_53202384_53202405_53209396_53209420_53209546_53209618_53216928_53216987_53221001_53221055_53221653_53221704_53224373_53224450_53226712
transcript_17590.known	chr11	+	978	2	FSM	ENSMUSG00000075420.7	ENSMUST00000132961.2	978	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTTATCGTGAGCTCATT	NA	False	NA	NA	False	AGTAAA	-15	NA	115802842	115804746	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_115803283_115804208
transcript_17598.known	chr11	-	1406	8	FSM	ENSMUSG00000020766.5	ENSMUST00000021114.5	1406	8	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_4	62.9907670591006	1836	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGTTCCTACTGCAGG	NA	False	NA	9	True	NA	NA	NA	115903545	115899282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115899541_115899628_115899792_115899873_115900025_115900746_115900929_115901066_115901203_115901388_115901509_115901852_115902043_115903339
transcript_17613.known	chr11	-	1993	4	FSM	ENSMUSG00000016559.15	ENSMUST00000016703.8	1993	4	0	0	0	0	multi-exon	FALSE	canonical	3	12160	junction_3	927.451466235416	19615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTAGCCTTGGCCACAA	NA	False	NA	9	True	AATAAA	-39	NA	115915330	115912786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115914362_115914450_115914605_115914707_115914846_115915204
transcript_17614.known	chr11	-	874	3	FSM	ENSMUSG00000016559.15	ENSMUST00000139623.2	874	3	0	0	0	0	multi-exon	FALSE	canonical	3	12160	junction_2	887	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGGATGGGTGATACTTC	NA	False	NA	NA	False	NA	NA	NA	115915340	115914018	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115914362_115914450_115914846_115915204
transcript_17615.known	chr11	-	773	3	FSM	ENSMUSG00000016559.15	ENSMUST00000139378.2	773	3	0	0	0	0	multi-exon	FALSE	canonical	3	13934	junction_1	171	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTTGAAGATACCAATCT	NA	False	NA	NA	False	NA	NA	NA	115915299	115914334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115914362_115914450_115914605_115914707
transcript_17616.known	chr11	+	3696	16	FSM	ENSMUSG00000020770.14	ENSMUST00000106452.2	3696	16	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_8	23.4630679058719	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGCTTGTTTATATGGGA	8822	False	NA	19	True	AATAAA	-13	NA	115921147	115952040	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_115921318_115938502_115938713_115939810_115939988_115940139_115940271_115940862_115940999_115941512_115941631_115942283_115942369_115943841_115943946_115944315_115944517_115945222_115945289_115945662_115945838_115946806_115946909_115947016_115947206_115949068_115949251_115949814_115950073_115950648
transcript_17621.known	chr11	+	471	3	FSM	ENSMUSG00000020770.14	ENSMUST00000176788.2	471	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	1	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTAGCAACTAAAAGCAGACA	8823	False	NA	NA	False	NA	NA	NA	115921148	115931876	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_115921318_115929365_115929610_115931818
transcript_17623.known	chr11	-	991	7	FSM	ENSMUSG00000057948.13	ENSMUST00000155120.2	991	7	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_6	12.657891697365	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAGAGGATCAGAGA	NA	False	NA	NA	False	NA	NA	NA	115968787	115966222	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115966712_115966933_115967001_115967095_115967156_115967267_115967376_115967577_115967614_115968273_115968488_115968770
transcript_17624.nic	chr11	-	1240	6	ISM	ENSMUSG00000057948.13	ENSMUST00000155120.2	991	7	34	0	14	0	3prime_fragment	FALSE	canonical	3	26	junction_4	7.60526133673262	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAGAGGATCAGAGA	NA	False	NA	NA	False	NA	NA	NA	115968753	115966222	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_115966712_115966933_115967001_115967095_115967156_115967267_115967376_115967577_115967614_115968273
transcript_17631.known	chr11	-	1826	8	FSM	ENSMUSG00000034341.18	ENSMUST00000074628.13	1826	8	0	0	0	0	multi-exon	FALSE	canonical	3	961	junction_1	94.6975852546475	2164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTCTCTGACTCTTGTGTG	NA	False	NA	-11	True	AGTAAA	-16	NA	115977821	115969398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115970423_115970533_115970611_115971047_115971171_115971371_115971507_115972057_115972151_115973101_115973238_115974664_115974774_115977692
transcript_17632.nnic	chr11	-	1127	5	NNC	ENSMUSG00000020773.12	novel	1503	4	NA	NA	-37	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	54.7083174663597	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTCCCCCTTTCATTCCT	NA	False	NA	NA	False	NA	NA	NA	115998982	115996577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_115996921_115997333_115997468_115997757_115997830_115998249_115998449_115998603
transcript_17635.known	chr11	-	782	4	FSM	ENSMUSG00000020773.12	ENSMUST00000134691.2	782	4	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	44.1437047229462	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGGGCCGGCTGGGCCGCA	NA	False	NA	NA	False	NA	NA	NA	115998861	115997217	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_115997468_115997757_115997833_115998249_115998449_115998603
transcript_17639.known	chr11	-	995	2	FSM	ENSMUSG00000020775.14	ENSMUST00000138457.2	995	2	0	0	0	0	multi-exon	FALSE	canonical	3	763	junction_1	0	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCTGGTGCCCCATCTCC	410	False	NA	NA	False	NA	NA	NA	116029691	116028607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_116029448_116029536
transcript_17640.known	chr11	-	1411	9	FSM	ENSMUSG00000020775.14	ENSMUST00000106439.2	1411	9	0	0	0	0	multi-exon	FALSE	canonical	3	763	junction_8	33.509093914936	2706	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATGTCTTCACTTTCGGG	407	False	NA	-2	True	AATAAA	-20	NA	116029694	116022642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_116022957_116023245_116023383_116023568_116023728_116025081_116025128_116025258_116025332_116025733_116025943_116026016_116026152_116029267_116029448_116029536
transcript_17641.known	chr11	-	1403	8	FSM	ENSMUSG00000020775.14	ENSMUST00000142550.8	1403	8	0	0	0	0	multi-exon	FALSE	canonical	3	777	junction_5	29.2665442484229	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCAATATGTCTTCACTTT	500	False	NA	-6	True	AATAAA	-16	NA	116029601	116022646	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_116022957_116023245_116023383_116023568_116023728_116025081_116025128_116025258_116025332_116025733_116025943_116026016_116026152_116029267
transcript_17644.known	chr11	-	3987	14	FSM	ENSMUSG00000020777.17	ENSMUST00000066587.12	3987	14	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_12	15.262593015675	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGCTGTTACGTGTAGA	NA	False	NA	1	True	AATAAA	-15	NA	116089871	116062713	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_116064425_116065118_116065326_116065456_116065601_116065813_116065920_116066030_116066211_116068945_116069137_116069507_116069671_116070433_116070604_116071116_116071233_116071768_116071889_116072738_116072847_116074289_116074451_116089047_116089208_116089421
transcript_17647.known	chr11	-	3743	14	FSM	ENSMUSG00000020777.17	ENSMUST00000072948.11	3743	14	0	0	0	0	multi-exon	TRUE	canonical	2	9	junction_11	29.8427833148373	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGCTGTTACGTGTAGA	NA	False	NA	1	True	AATAAA	-15	NA	116089627	116062713	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_116064425_116065118_116065326_116065456_116065601_116065813_116065920_116066030_116066211_116068945_116069137_116069507_116069671_116070433_116070604_116071116_116071233_116071768_116071889_116072738_116072847_116080240_116080402_116089047_116089208_116089421
transcript_17652.known	chr11	+	435	2	FSM	ENSMUSG00000020778.13	ENSMUST00000146066.8	435	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGGCGCTGTGGCTTGTG	9171	False	NA	-63	True	AATGAA	-27	NA	116089784	116106074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116089810_116105664
transcript_17653.known	chr11	+	523	2	FSM	ENSMUSG00000020778.13	ENSMUST00000135460.2	523	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGGCGCTGTGGCTTGTG	9561	False	NA	-63	True	AATGAA	-27	NA	116101759	116106074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116101873_116105664
transcript_17654.known	chr11	+	902	4	FSM	ENSMUSG00000020778.13	ENSMUST00000021130.7	902	4	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_3	16.0277537068951	1771	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTGTGTGCTGATGCGG	9067	False	NA	7	True	AATAAA	-14	NA	116089680	116106144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116089810_116095670_116095806_116096436_116096595_116105664
transcript_17655.nnic	chr11	+	1576	8	NNC	ENSMUSG00000092300.8	novel	915	7	NA	NA	-583	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	2.76272565797339	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGGTGTCAATCTTCG	NA	False	NA	NA	False	AATAAA	-17	NA	116106245	116111113	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_116106386_116106818_116106945_116107236_116107315_116107385_116107507_116107596_116107768_116107857_116107960_116108919_116109124_116110479
transcript_1766.nnic	chr1	-	665	9	NNC	ENSMUSG00000060715.10	novel	646	9	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	14.6452850774575	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACAGAATGGAATTGCTT	NA	False	NA	NA	False	AATAAA	-28	NA	53226791	53197735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_53197948_53202384_53202428_53209396_53209420_53209546_53209618_53216928_53216987_53221001_53221055_53221653_53221704_53224373_53224450_53226712
transcript_17666.known	chr11	-	2526	16	FSM	ENSMUSG00000020780.16	ENSMUST00000021133.16	2526	16	0	0	0	0	multi-exon	FALSE	canonical	3	572	junction_9	48.1105209099031	742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGTGTCTGGTTTTTGCA	9817	False	NA	-2	True	ATTAAA	-17	NA	116165043	116135991	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_116136757_116137045_116137099_116137470_116137547_116138641_116138772_116139556_116139652_116141561_116141719_116143554_116143620_116145127_116145227_116151619_116151761_116152570_116152654_116153685_116153796_116154040_116154124_116156182_116156379_116159099_116159214_116162738_116162806_116164751
transcript_1770.nnic	chr1	-	756	8	NIC	ENSMUSG00000060715.10	novel	646	9	NA	NA	-2	184	combination_of_known_splicesites	FALSE	canonical	3	26	junction_7	12.1504178142657	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATGGTGCCCTTGGTTTA	NA	False	NA	NA	False	ATTAAA	-13	NA	53226797	53197551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_53197948_53202384_53202405_53209396_53209420_53209546_53209618_53216928_53216987_53221001_53221055_53221653_53221704_53226712
transcript_17701.nnic	chr11	-	1077	4	NNC	ENSMUSG00000020780.16	novel	2330	15	NA	NA	14080	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_3	284.738866722164	159	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGTGTCTGGTTTTTGCA	783	False	NA	-2	True	ATTAAA	-17	NA	116138084	116135991	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_116136757_116137045_116137099_116137470_116137547_116137901
transcript_17702.nnic	chr11	-	1180	4	NNC	ENSMUSG00000020780.16	novel	2330	15	NA	NA	13937	0	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_3	287.567190216285	177	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGTGTCTGGTTTTTGCA	640	False	NA	-2	True	ATTAAA	-17	NA	116138227	116135991	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_116136757_116137045_116137099_116137470_116137547_116137941
transcript_17706.known	chr11	+	1940	2	FSM	ENSMUSG00000020793.6	ENSMUST00000055872.3	1940	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATACCATTTCATATGCTGT	NA	False	NA	NA	False	AATAAA	-15	NA	116171764	116174764	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116172677_116173736
transcript_17709.known	chr11	-	3298	19	FSM	ENSMUSG00000020792.16	ENSMUST00000106413.10	3298	19	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_12	61.2926847990569	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAAGCTTCCTCTGGTGGTG	8920	False	NA	NA	False	ATTAAA	-19	NA	116197560	116178826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_116180112_116180350_116180485_116180775_116180818_116181032_116181097_116181964_116182061_116182279_116182401_116183344_116183411_116184797_116184865_116185232_116185296_116185567_116185667_116185999_116186153_116186369_116186516_116188396_116188490_116191091_116191260_116191929_116192153_116195402_116195509_116195689_116195875_116197213_116197280_116197439
transcript_17710.known	chr11	-	3205	18	FSM	ENSMUSG00000020792.16	ENSMUST00000106411.10	3205	18	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_14	26.4175940114993	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAAGCTTCCTCTGGTGGTG	8920	False	NA	NA	False	ATTAAA	-19	NA	116197560	116178826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_116180112_116180350_116180485_116180775_116180818_116181032_116181097_116181964_116182061_116182279_116182401_116183344_116183411_116184797_116184865_116185232_116185296_116185567_116185667_116185999_116186153_116186369_116186516_116191091_116191260_116191929_116192153_116195402_116195509_116195689_116195875_116197213_116197280_116197439
transcript_1772.nnic	chr1	-	572	8	NIC	ENSMUSG00000060715.10	novel	646	9	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	26	junction_7	12.1504178142657	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACAGAATGGAATTGCTT	NA	False	NA	NA	False	AATAAA	-28	NA	53226797	53197735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_53197948_53202384_53202405_53209396_53209420_53209546_53209618_53216928_53216987_53221001_53221055_53221653_53221704_53226712
transcript_17721.nnic	chr11	-	890	6	NNC	ENSMUSG00000020792.16	novel	370	3	NA	NA	-17	3761	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	84.2558009872317	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTTTGTTTTAGATTTA	8903	False	NA	NA	False	NA	NA	NA	116197577	116191676	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_116191849_116191929_116192153_116195402_116195509_116195689_116195875_116197213_116197280_116197439
transcript_17722.nnic	chr11	-	568	5	NNC	ENSMUSG00000020792.16	novel	370	3	NA	NA	-17	2955	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	94.1328847959097	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGCCTGCGAGCATCAC	8903	False	NA	NA	False	AAGAAA	-28	NA	116197577	116192482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_116192556_116195402_116195509_116195689_116195875_116197213_116197280_116197439
transcript_17724.known	chr11	+	456	1	FSM	ENSMUSG00000081929.2	ENSMUST00000121547.2	456	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	180	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGACTCTGGCCAATGCCC	NA	False	NA	NA	False	NA	NA	NA	116273575	116274031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116273600_116274000
transcript_17726.known	chr11	+	1482	3	FSM	ENSMUSG00000050628.7	ENSMUST00000057676.7	1482	3	0	0	0	0	multi-exon	TRUE	canonical	3	1535	junction_2	51	1059	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTGTTTTTGTTTTTGC	NA	False	NA	36	True	TTTAAA	-29	NA	116324919	116329903	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116325255_116325384_116325448_116328819
transcript_17731.known	chr11	-	1841	10	FSM	ENSMUSG00000015869.17	ENSMUST00000106391.8	1841	10	0	0	0	0	multi-exon	FALSE	canonical	3	803	junction_5	49.0028973696177	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGCTGCTGAGCTCCCAG	NA	False	NA	-7	True	AATAAA	-27	NA	116381174	116361670	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_116362382_116363002_116363150_116363769_116363841_116368027_116368174_116368885_116368942_116369350_116369467_116370477_116370651_116376694_116376762_116378943_116378997_116380873
transcript_17732.known	chr11	-	1691	9	FSM	ENSMUSG00000015869.17	ENSMUST00000152874.8	1691	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	291.250321888234	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGCTGCTGAGCTCCCAG	NA	False	NA	-7	True	AATAAA	-27	NA	116381140	116361670	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_116362382_116363002_116363150_116363769_116363841_116368027_116368174_116368885_116368942_116370477_116370651_116376694_116376762_116378943_116378997_116380873
transcript_17735.known	chr11	-	738	3	FSM	ENSMUSG00000015869.17	ENSMUST00000144154.2	738	3	0	0	0	0	multi-exon	FALSE	canonical	3	839	junction_2	49.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116381153	116376356	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_116376762_116378943_116378997_116380873
transcript_17736.known	chr11	+	2527	6	FSM	ENSMUSG00000061878.17	ENSMUST00000063446.13	2527	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.49666295470958	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATCCTATCCTGGGGATT	NA	False	NA	NA	False	AATAAA	-18	NA	116423298	116427500	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116424195_116424795_116425000_116425674_116425828_116425905_116426001_116426077_116426194_116426437
transcript_17737.known	chr11	-	3593	19	FSM	ENSMUSG00000020806.16	ENSMUST00000103029.10	3593	19	0	0	0	0	multi-exon	FALSE	canonical	2	65	junction_12	15.7409586041568	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCTTTTGCCTTAGAC	NA	False	NA	-15	True	ATTAAA	-19	NA	116515026	116488990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_116490265_116490886_116491041_116491223_116491325_116491435_116491512_116491720_116491816_116491911_116491976_116492110_116492218_116492419_116492582_116492714_116492790_116493014_116493127_116494478_116494680_116494757_116494877_116495203_116495333_116495786_116495991_116496068_116496265_116496933_116497059_116498053_116498254_116501129_116501306_116515003
transcript_17739.nic	chr11	+	630	4	ISM	ENSMUSG00000075410.14	ENSMUST00000116318.3	799	5	401	-2	353	0	3prime_fragment	FALSE	canonical	2	3	junction_1	3.09120616516523	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTAAAGACTGCTTTCT	NA	False	NA	NA	False	AATAAA	-39	NA	116548334	116559215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_116548433_116550123_116550203_116550558_116550654_116558857
transcript_17740.nnic	chr11	+	660	4	NNC	ENSMUSG00000075410.14	novel	934	6	NA	NA	542	0	intron_retention	FALSE	canonical	2	2	junction_1	3.55902608401044	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTAAAGACTGCTTTCT	NA	False	NA	NA	False	AATAAA	-39	NA	116548523	116559215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_116548652_116550123_116550203_116550558_116550654_116558857
transcript_17742.nnic	chr11	+	703	4	NNC	ENSMUSG00000075410.14	novel	934	6	NA	NA	923	0	intron_retention	FALSE	canonical	1	2	junction_1	3.55902608401044	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTAAAGACTGCTTTCT	NA	False	NA	NA	False	AATAAA	-39	NA	116548904	116559215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_116549076_116550123_116550203_116550558_116550654_116558857
transcript_17743.nnic	chr11	+	781	4	NNC	ENSMUSG00000075410.14	novel	934	6	NA	NA	1215	0	intron_retention	FALSE	canonical	1	1	junction_1	4.02768199119819	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTAAAGACTGCTTTCT	NA	False	NA	NA	False	AATAAA	-39	NA	116549196	116559215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_116549446_116550123_116550203_116550558_116550654_116558857
transcript_17747.nic	chr11	+	765	3	ISM	ENSMUSG00000075410.14	ENSMUST00000116318.3	799	5	1957	-2	1909	0	3prime_fragment	FALSE	canonical	3	9	junction_2	0.5	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTAAAGACTGCTTTCT	NA	False	NA	NA	False	AATAAA	-39	NA	116549890	116559215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_116550203_116550558_116550654_116558857
transcript_17748.nnic	chr11	+	527	3	NNC	ENSMUSG00000075410.14	novel	934	6	NA	NA	2254	0	intron_retention	FALSE	canonical	1	1	junction_1	4	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTAAAGACTGCTTTCT	NA	False	NA	NA	False	AATAAA	-39	NA	116550235	116559215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_116550310_116550558_116550654_116558857
transcript_17749.known	chr11	+	799	5	FSM	ENSMUSG00000075410.14	ENSMUST00000116318.3	799	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	3.83242742918897	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACTGTAAAGACTGCTTT	NA	False	NA	NA	False	AATAAA	-37	NA	116547933	116559213	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116548134_116548363_116548433_116550123_116550203_116550558_116550654_116558857
transcript_17750.known	chr11	-	3643	9	FSM	ENSMUSG00000057286.7	ENSMUST00000079545.6	3643	9	0	0	0	0	multi-exon	TRUE	canonical	3	12	junction_5	7.34421541078419	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGGCCAAAAAAAGGTTTC	NA	False	NA	NA	False	AAGAAA	-21	NA	116585694	116566128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_116568508_116569291_116569392_116570732_116570817_116572684_116572789_116575171_116575311_116575922_116576092_116576661_116576837_116581137_116581199_116585262
transcript_17755.known	chr11	+	661	5	FSM	ENSMUSG00000020812.19	ENSMUST00000142834.8	661	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	73.9915535720125	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTGGTAGCATTGTGGG	NA	False	NA	0	True	AATAAA	-13	NA	116562494	116566621	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116562583_116563489_116563565_116564763_116564898_116565125_116565202_116566333
transcript_17758.known	chr11	+	857	6	FSM	ENSMUSG00000020812.19	ENSMUST00000239281.2	857	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	61.1901952930369	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTAGCATTGTGGGTATA	NA	False	NA	4	True	AATAAA	-17	NA	116562513	116566625	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116562583_116562989_116563182_116563489_116563565_116564763_116564898_116565125_116565202_116566314
transcript_17759.known	chr11	+	1083	5	FSM	ENSMUSG00000020812.19	ENSMUST00000239180.2	1083	5	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_4	27.427176303805	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGGTAGCATTGTGGGTA	NA	False	NA	2	True	AATAAA	-15	NA	116562494	116566623	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116562583_116562989_116563182_116563489_116563565_116564763_116565202_116566333
transcript_17760.known	chr11	+	1988	5	FSM	ENSMUSG00000020812.19	ENSMUST00000106378.8	1988	5	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	18.9340962287615	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTAGCATTGTGGGTAT	NA	False	NA	3	True	AATAAA	-16	NA	116562494	116566624	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116562583_116562989_116563182_116563489_116563565_116564763_116564898_116565125
transcript_17761.known	chr11	+	1151	5	FSM	ENSMUSG00000020812.19	ENSMUST00000153405.3	1151	5	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_4	29.8862426544388	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAACTTGGTAGCATTGTG	NA	False	NA	-2	True	AATAAA	-11	NA	116562502	116566619	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116562583_116562989_116563565_116564763_116564898_116565125_116565202_116566333
transcript_17762.known	chr11	+	881	6	FSM	ENSMUSG00000020812.19	ENSMUST00000239190.2	881	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	68.9132788365203	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCCTGCCCCTGTCCTTA	NA	False	NA	NA	False	AATAAA	-14	NA	116562506	116575898	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116562583_116562989_116563182_116563489_116563565_116564763_116564898_116565125_116565202_116575570
transcript_17767.known	chr11	+	3298	13	FSM	ENSMUSG00000020818.17	ENSMUST00000021173.14	3298	13	0	0	0	0	multi-exon	TRUE	canonical	3	74	junction_12	6.07076326887045	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116744645	116766461	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116745000_116745468_116745525_116749299_116749408_116750124_116750205_116750322_116750420_116751884_116751944_116752348_116752494_116754731_116754773_116756716_116756783_116759359_116759486_116762119_116762295_116764069_116764206_116764606
transcript_17774.nic	chr11	+	1557	6	NIC	ENSMUSG00000090266.11	novel	1276	5	NA	NA	-98	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_2	44.7812460746684	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTACTCCCAATCATTAAA	8570	False	NA	15	True	ATTAAA	-17	NA	116734005	116740566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_116734601_116736588_116736772_116739079_116739185_116739726_116739965_116740041_116740127_116740215
transcript_17787.known	chr11	+	1276	5	FSM	ENSMUSG00000090266.11	ENSMUST00000106370.10	1276	5	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	13.3603892158874	1554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTACTCCCAATCATTAAA	8668	False	NA	15	True	ATTAAA	-17	NA	116734103	116740566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116734601_116739079_116739185_116739726_116739965_116740041_116740127_116740215
transcript_17795.known	chr11	+	568	5	FSM	ENSMUSG00000020818.17	ENSMUST00000134106.2	568	5	0	0	0	0	multi-exon	TRUE	canonical	2	6	junction_1	34.3684084589322	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTGGTCATGGTGATATT	5912	False	NA	NA	False	NA	NA	NA	116759193	116764663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116759268_116759359_116759486_116762119_116762295_116764069_116764206_116764606
transcript_17797.known	chr11	+	541	4	FSM	ENSMUSG00000090266.11	ENSMUST00000140869.2	541	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	46.2048578494609	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATGGGGCCACATATCAAA	9065	False	NA	NA	False	NA	NA	NA	116734500	116739879	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116734601_116736588_116736772_116739079_116739185_116739726
transcript_17803.known	chr11	+	847	4	FSM	ENSMUSG00000090266.11	ENSMUST00000176799.8	847	4	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	14.8996644257513	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTCAATGGGTATGAAGA	9063	False	NA	17	True	CATAAA	-17	NA	116734498	116740455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116734601_116739079_116739185_116739726_116740127_116740215
transcript_17810.known	chr11	+	1785	3	FSM	ENSMUSG00000090266.11	ENSMUST00000175930.8	1785	3	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	16.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAAATACATAAGAGAAG	8945	False	NA	NA	False	NA	NA	NA	116734380	116741186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116734601_116739079_116739185_116739726
transcript_17818.known	chr11	-	1899	3	FSM	ENSMUSG00000034120.19	ENSMUST00000092404.13	1899	3	0	0	0	0	multi-exon	FALSE	canonical	3	1775	junction_2	41.5	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCCTGGTCTTTTGTTT	6003	False	NA	-5	True	ATTAAA	-31	NA	116743920	116740726	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_116741788_116742846_116743158_116743393
transcript_1782.nnic	chr1	-	490	6	NIC	ENSMUSG00000060715.10	novel	646	9	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	19.630588376307	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACAGAATGGAATTGCTT	NA	False	NA	NA	False	AATAAA	-28	NA	53226791	53197735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_53197948_53202384_53202405_53221001_53221055_53221653_53221704_53224373_53224450_53226712
transcript_17821.known	chr11	+	585	2	FSM	ENSMUSG00000090266.11	ENSMUST00000128784.2	585	2	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATCAAAGTCTATGCAAT	8951	False	NA	24	True	AATAAA	-29	NA	116734386	116736959	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116734601_116736588
transcript_17823.known	chr11	+	427	2	FSM	ENSMUSG00000090266.11	ENSMUST00000176765.2	427	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGCCTCCACCCCTCAGT	8975	False	NA	-54	True	NA	NA	NA	116734410	116736881	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116734601_116736644
transcript_17826.known	chr11	+	343	2	FSM	ENSMUSG00000020818.17	ENSMUST00000135135.2	343	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAGCAAGCGGAGCCAAAA	NA	False	NA	NA	False	NA	NA	NA	116744299	116744884	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116744584_116744825
transcript_17827.known	chr11	+	382	2	FSM	ENSMUSG00000020818.17	ENSMUST00000126661.2	382	2	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	0	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCCAAGATTGCACCTCCT	NA	False	NA	5	True	AATAAA	-18	NA	116744604	116745082	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116744730_116744825
transcript_17828.known	chr11	+	419	2	FSM	ENSMUSG00000020818.17	ENSMUST00000151944.3	419	2	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTTATTTTGCATGTCAT	NA	False	NA	NA	False	NA	NA	NA	116744654	116745542	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116745000_116745468
transcript_17829.known	chr11	-	1668	6	FSM	ENSMUSG00000056962.12	ENSMUST00000047616.10	1668	6	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_2	32.356761271796	634	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGGACAGCTTTCTTT	NA	False	NA	-7	True	AATAAA	-16	NA	116734275	116728257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_116728590_116729815_116729955_116731235_116731372_116731894_116732182_116733157_116733547_116733890
transcript_17830.known	chr11	-	2072	6	FSM	ENSMUSG00000056962.12	ENSMUST00000141735.8	2072	6	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	108.952466699933	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGGACAGCTTTCTTT	NA	False	NA	-7	True	AATAAA	-16	NA	116734107	116728257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_116728590_116729815_116729955_116730663_116731372_116731894_116732182_116733157_116733547_116733890
transcript_17831.known	chr11	-	620	3	FSM	ENSMUSG00000034120.19	ENSMUST00000176834.8	620	3	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_1	811.5	1154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAATGTGTCCTGGTCTTT	7011	False	NA	-10	True	ATTAAA	-26	NA	116742912	116740731	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_116741180_116741681_116741788_116742846
transcript_17835.known	chr11	+	636	3	FSM	ENSMUSG00000086859.5	ENSMUST00000232695.2	636	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	306	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTTCCATTGTTCAAT	100	False	NA	20	True	AATAAA	-16	NA	116966833	116969781	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116967195_116967933_116968029_116969601
transcript_17837.known	chr11	+	389	3	FSM	ENSMUSG00000086859.5	ENSMUST00000233685.2	389	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	307	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTTCCATTGTTCAAT	556	False	NA	20	True	AATAAA	-16	NA	116967289	116969781	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116967404_116967933_116968029_116969601
transcript_17838.known	chr11	+	422	3	FSM	ENSMUSG00000086859.5	ENSMUST00000232907.2	422	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	299	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTTCCATTGTTCAAT	707	False	NA	20	True	AATAAA	-16	NA	116967440	116969781	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116967588_116967933_116968029_116969601
transcript_17844.known	chr11	+	1090	3	FSM	ENSMUSG00000086859.5	ENSMUST00000233355.2	1090	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.5	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCTGTTTCCATTGTTCA	880	False	NA	18	True	AATAAA	-14	NA	116967613	116969779	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116968029_116968668_116969166_116969601
transcript_17846.known	chr11	+	2153	1	FSM	ENSMUSG00000086859.5	ENSMUST00000182811.2	2153	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTGTTTCCATTGTTCAA	894	False	NA	19	True	AATAAA	-15	NA	116967627	116969780	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116967600_116969800
transcript_17847.known	chr11	+	193	1	FSM	ENSMUSG00002076896.1	ENSMUST00020182044.1	193	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGCTGAAGCTGTGGGG	1335	False	NA	25	True	NA	NA	NA	116968068	116968261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116968100_116968300
transcript_17848.known	chr11	+	110	1	FSM	ENSMUSG00000104740.3	ENSMUST00000196236.3	110	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGCACAGTCCTCCAAAAG	1440	False	NA	47	True	NA	NA	NA	116968173	116968283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116968200_116968300
transcript_17849.known	chr11	+	600	2	FSM	ENSMUSG00000086859.5	ENSMUST00000149822.3	600	2	0	0	0	0	multi-exon	FALSE	canonical	3	615	junction_1	0	4687	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTTCCATTGTTCAAT	875	False	NA	20	True	AATAAA	-16	NA	116967608	116969781	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_116968029_116969601
transcript_17853.known	chr11	-	753	3	FSM	ENSMUSG00000087057.8	ENSMUST00000147186.2	753	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAACCCATTTCTCCCTTA	NA	False	NA	NA	False	AATAAA	-14	NA	116987853	116985910	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_116986100_116986445_116986619_116987462
transcript_17854.known	chr11	+	2866	17	FSM	ENSMUSG00000020823.17	ENSMUST00000021177.15	2866	17	0	0	0	0	multi-exon	TRUE	canonical	3	28	junction_16	82.8488599423673	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGAGTGTCCTTTTCTTCT	NA	False	NA	5	True	AATAAA	-15	NA	117005997	117050091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_117006178_117007985_117008079_117032243_117032394_117032487_117032620_117034112_117034242_117034606_117034842_117035674_117035785_117037933_117038124_117039360_117039450_117039971_117040043_117040984_117041157_117041429_117041565_117043969_117044105_117046045_117046298_117047186_117047366_117047626_117047729_117049579
transcript_17855.known	chr11	+	4654	16	FSM	ENSMUSG00000020823.17	ENSMUST00000090433.6	4654	16	0	0	0	0	multi-exon	FALSE	canonical	3	319	junction_5	24.9420662068455	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTGTCCTTTTCTTCTTGG	NA	False	NA	8	True	AATAAA	-18	NA	117006063	117050094	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_117006178_117007985_117008079_117032243_117032394_117032487_117032620_117034112_117034242_117034606_117034842_117035674_117035785_117037933_117038124_117039360_117039450_117039971_117040043_117040984_117041157_117041429_117041565_117043969_117044105_117046045_117046298_117047186_117047366_117047626
transcript_17857.known	chr11	+	1047	3	FSM	ENSMUSG00000020823.17	ENSMUST00000146585.2	1047	3	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_2	191.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGGATTGAAGGAATAGT	NA	False	NA	NA	False	AATAAA	-15	NA	117006077	117019589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_117006178_117007985_117008079_117018735
transcript_17858.nic	chr11	+	361	2	ISM	ENSMUSG00000020823.17	ENSMUST00000146585.2	1047	3	-103	11446	-19	-11446	5prime_fragment	FALSE	canonical	3	387	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCGCTCCTTGTTATCATT	NA	False	NA	NA	False	ATTAAA	-18	NA	117005974	117008143	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_117006178_117007985
transcript_17859.known	chr11	+	3616	12	FSM	ENSMUSG00000059248.14	ENSMUST00000093907.11	3616	12	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	260.952736292441	1088	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTCTTTGGCAAGACCT	3698	False	NA	103	True	AATAAA	-28	NA	117090486	117253151	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_117090600_117109700_117109758_117181223_117181863_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
transcript_17860.known	chr11	+	3784	11	FSM	ENSMUSG00000059248.14	ENSMUST00000019038.15	3784	11	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	218.744622791053	1094	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	696	False	NA	91	True	AATAAA	-16	NA	117157071	117253139	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_117157422_117181223_117181863_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
transcript_17865.nic	chr11	+	2948	10	NIC	ENSMUSG00000059248.14	novel	647	4	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	3	78	junction_1	178.114819397177	1098	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	NA	False	NA	91	True	AATAAA	-16	NA	117198944	117253139	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_117199098_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
transcript_17871.known	chr11	+	2924	10	FSM	ENSMUSG00000059248.14	ENSMUST00000100193.8	2924	10	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	196.831569283656	1076	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACTTTTTTTCTGGAGT	NA	False	NA	86	True	AATAAA	-11	NA	117222545	117253134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_117222680_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
transcript_17875.known	chr11	+	2932	10	FSM	ENSMUSG00000059248.14	ENSMUST00000106349.2	2932	10	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_1	107.436803129406	1202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTCTCTTTGGCAAGACC	NA	False	NA	102	True	AATAAA	-27	NA	117223170	117253150	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_117223297_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
transcript_17878.known	chr11	+	374	3	FSM	ENSMUSG00000059248.14	ENSMUST00000153668.8	374	3	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	303.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGTGCAGCCCACCTCGG	NA	False	NA	NA	False	NA	NA	NA	117198979	117243038	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_117199098_117242254_117242447_117242974
transcript_17881.nic	chr11	+	522	2	ISM	ENSMUSG00000025571.14	ENSMUST00000026658.13	8724	22	-69	62658	-69	-48522	5prime_fragment	FALSE	canonical	1	10	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGCAGGAAGACAAGAA	NA	False	NA	NA	False	AAAAAG	-1	NA	117545045	117591605	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_+_117545513_117591550
transcript_17882.known	chr11	+	2644	16	FSM	ENSMUSG00000050106.19	ENSMUST00000106334.9	2644	16	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	5.15708789488366	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTTGGAAATACTTGAAT	7632	False	NA	NA	False	NA	NA	NA	117673140	117683936	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_117673235_117673875_117674097_117674220_117674370_117674596_117674747_117674935_117675022_117675630_117675768_117675945_117676094_117677212_117677384_117677554_117677695_117681041_117681166_117681508_117681607_117681733_117681918_117682053_117682185_117682268_117682428_117682914_117682994_117683363
transcript_17885.known	chr11	-	2865	20	FSM	ENSMUSG00000025572.19	ENSMUST00000026659.10	2865	20	0	0	0	0	multi-exon	TRUE	canonical	3	224	junction_9	41.6618095045227	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTTGTGCTTCAGGATG	NA	False	NA	-4	True	ATTAAA	-15	NA	117671465	117656813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_117657160_117658391_117658460_117659747_117659827_117659931_117660109_117660218_117660353_117661294_117661371_117661516_117661613_117663498_117663679_117663772_117663925_117664188_117664345_117665047_117665193_117665833_117666025_117666414_117666673_117666879_117666977_117667063_117667170_117669069_117669229_117669530_117669627_117669758_117669875_117669988_117670118_117671361
transcript_17886.known	chr11	+	2327	11	FSM	ENSMUSG00000017718.16	ENSMUST00000073388.13	2327	11	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	8.17312669668102	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGGTTTTCTGTTTGTTT	NA	False	NA	15	True	NA	NA	NA	117716749	117730734	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_117716833_117718904_117718996_117723170_117723276_117723353_117723403_117725592_117725679_117725771_117725845_117725970_117726069_117726328_117726408_117726491_117726634_117727233_117727339_117729318
transcript_17889.known	chr11	+	1583	10	FSM	ENSMUSG00000017718.16	ENSMUST00000149668.2	1583	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	8.4998184439579	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGACAGGTGATAATCTTT	NA	False	NA	NA	False	GATAAA	-21	NA	117716799	117728060	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_117716833_117718904_117718996_117723170_117723276_117723353_117723403_117725592_117725679_117725771_117725845_117725970_117726069_117726328_117726408_117726491_117726634_117727233
transcript_17901.nic	chr11	-	1301	6	NIC	ENSMUSG00000025574.14	novel	1440	7	NA	NA	107	0	combination_of_known_junctions	FALSE	canonical	3	149	junction_5	366.911215418662	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGTGTTTCTCCTTAGCC	NA	False	NA	-17	True	ATTAAA	-16	NA	117716811	117706351	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_117706966_117707272_117707393_117707927_117708018_117712922_117713017_117715496_117715608_117716539
transcript_17911.known	chr11	+	1520	4	FSM	ENSMUSG00000048277.16	ENSMUST00000026649.14	1520	4	0	0	0	0	multi-exon	FALSE	canonical	3	588	junction_1	45.536310297998	2321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTTGTGCTGGGTGGCGC	NA	False	NA	14	True	AATAAA	-14	NA	117700493	117705109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_117700630_117703284_117703523_117703871_117704012_117704103
transcript_17914.known	chr11	+	1402	4	FSM	ENSMUSG00000048277.16	ENSMUST00000120928.2	1402	4	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	286.604256772296	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTTGTGCTGGGTGGCGC	NA	False	NA	14	True	AATAAA	-14	NA	117700521	117705109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_117700630_117703374_117703523_117703871_117704012_117704103
transcript_17916.known	chr11	+	785	3	FSM	ENSMUSG00000048277.16	ENSMUST00000175737.2	785	3	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	289.5	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATAGTACTGTAGATAGG	NA	False	NA	NA	False	NA	NA	NA	117700537	117704558	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_117700630_117703284_117703523_117704103
transcript_17920.known	chr11	-	786	3	FSM	ENSMUSG00000025574.14	ENSMUST00000154790.2	786	3	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_2	493.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAATCAGCCTGTGCTCCAG	NA	False	NA	NA	False	NA	NA	NA	117716663	117712465	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_117713017_117715496_117715608_117716539
transcript_17921.known	chr11	-	1440	7	FSM	ENSMUSG00000025574.14	ENSMUST00000026661.4	1440	7	0	0	0	0	multi-exon	FALSE	canonical	3	796	junction_5	107.729084074615	3526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGTGTTTCTCCTTAGCC	NA	False	NA	-17	True	ATTAAA	-16	NA	117716918	117706351	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_117706966_117707272_117707393_117707927_117708018_117712922_117713017_117715496_117715608_117716426_117716459_117716539
transcript_17933.known	chr11	+	947	4	FSM	ENSMUSG00000017716.16	ENSMUST00000081387.11	947	4	0	0	0	0	multi-exon	FALSE	canonical	3	1683	junction_1	206.515536138729	16750	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTAAGCTCTGTCTGTCT	NA	False	NA	29	True	AATAAA	-18	NA	117740076	117746558	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_117740288_117740579_117740690_117743488_117743607_117746050
transcript_17934.known	chr11	+	3334	3	FSM	ENSMUSG00000017716.16	ENSMUST00000093906.5	3334	3	0	0	0	0	multi-exon	FALSE	canonical	3	1683	junction_1	252.5	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGTCTTGGAGAAATGG	NA	False	NA	40	True	AATAAA	-29	NA	117740144	117746569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_117740288_117740579_117740690_117743488
transcript_17937.known	chr11	-	2686	5	FSM	ENSMUSG00000017713.10	ENSMUST00000153989.2	2686	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.48746859276655	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTATACTGGTTACTTTTA	NA	False	NA	NA	False	NA	NA	NA	117764307	117758777	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_117759569_117760185_117760379_117760496_117760635_117761260_117762514_117763996
transcript_1794.known	chr1	-	3054	13	FSM	ENSMUSG00000026098.14	ENSMUST00000027267.14	3054	13	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_1	15.4495145554804	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTTTCACGTCCAACC	6052	False	NA	NA	False	AATAAA	-18	NA	53336177	53228345	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_53228658_53231258_53231420_53234086_53234218_53235981_53236462_53245720_53246572_53246734_53246879_53247121_53247245_53255389_53255507_53295787_53295952_53306986_53307090_53314228_53314412_53321099_53321252_53336044
transcript_17943.known	chr11	-	2552	2	FSM	ENSMUSG00000053113.4	ENSMUST00000054002.4	2552	2	0	0	0	0	multi-exon	FALSE	canonical	3	1319	junction_1	0	447	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTTGAGCCTTTCTTTC	NA	False	NA	NA	False	AATAAA	-30	NA	117860012	117856904	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_117859145_117859700
transcript_17949.nic	chr11	-	637	4	ISM	ENSMUSG00000033987.17	ENSMUST00000132685.9	13612	81	36947	65772	15	-1521	internal_fragment	FALSE	canonical	1	2	junction_2	0.816496580927726	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCTCTTCCCAGGGTGGT	7357	False	NA	NA	False	NA	NA	NA	117984513	117979673	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_117979908_117981541_117981650_117982219_117982346_117984344
transcript_17952.known	chr11	+	2863	10	FSM	ENSMUSG00000017715.12	ENSMUST00000132676.8	2863	10	0	0	0	0	multi-exon	TRUE	canonical	1	116	junction_9	67.5268579397108	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTTGCTCAAGTGAT	NA	False	NA	16	True	AATAAA	-14	NA	117877117	117914837	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_117877840_117888266_117888457_117891024_117891103_117892441_117892542_117893176_117893367_117894166_117894346_117896195_117896718_117905399_117905549_117910432_117910559_117914230
transcript_17954.known	chr11	+	2197	10	FSM	ENSMUSG00000017715.12	ENSMUST00000017859.10	2197	10	0	0	0	0	multi-exon	FALSE	canonical	1	46	junction_7	99.2782596518803	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTTGCTCAAGTGAT	NA	False	NA	16	True	AATAAA	-14	NA	117877710	117914837	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_117877840_117888266_117888457_117891024_117891103_117892441_117892542_117893176_117893367_117894166_117894346_117896195_117896718_117905472_117905549_117910432_117910559_117914230
transcript_17960.nnic	chr11	+	888	4	NNC	ENSMUSG00000017715.12	novel	3113	3	NA	NA	-4306	0	at_least_one_novel_splicesite	FALSE	canonical	1	16	junction_1	147.648983139818	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCAGACTGCTGTTGTCT	NA	False	NA	4	True	TATAAA	-14	NA	117898862	117914751	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_117898955_117905399_117905549_117910432_117910559_117914230
transcript_17961.nnic	chr11	+	974	4	NNC	ENSMUSG00000017715.12	novel	3113	3	NA	NA	-4306	0	at_least_one_novel_splicesite	FALSE	canonical	1	16	junction_1	147.648983139818	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTTGCTCAAGTGAT	NA	False	NA	16	True	AATAAA	-14	NA	117898862	117914837	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_117898955_117905399_117905549_117910432_117910559_117914230
transcript_17965.nnic	chr11	+	898	4	NNC	ENSMUSG00000017715.12	novel	3113	3	NA	NA	-4303	0	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_1	151.078346121033	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTTGCTCAAGTGAT	NA	False	NA	16	True	AATAAA	-14	NA	117898865	117914837	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_117898955_117905472_117905549_117910432_117910559_117914230
transcript_1797.known	chr1	-	3054	5	FSM	ENSMUSG00000026098.14	ENSMUST00000142922.2	3054	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	65.1267993993256	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGATCAAGGGAAAATAAGA	6103	False	NA	NA	False	TTTAAA	-5	NA	53336126	53302053	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_53304588_53306986_53307090_53314228_53314412_53321099_53321252_53336044
transcript_17970.nnic	chr11	+	948	4	NNC	ENSMUSG00000017715.12	novel	3113	3	NA	NA	-4004	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	153.168752252758	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTTGCTCAAGTGAT	NA	False	NA	16	True	AATAAA	-14	NA	117899164	117914837	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_117899231_117905399_117905549_117910432_117910559_117914230
transcript_17977.nnic	chr11	+	1309	3	NIC	ENSMUSG00000017715.12	novel	2863	10	NA	NA	4521	0	combination_of_known_splicesites	FALSE	canonical	1	6	junction_1	55	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTTGCTCAAGTGAT	NA	False	NA	16	True	AATAAA	-14	NA	117896141	117914837	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_117896718_117910432_117910559_117914230
transcript_17982.known	chr11	-	3135	13	FSM	ENSMUSG00000017132.18	ENSMUST00000017276.14	3135	13	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	8.05665701282003	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCACTTCATGTTCTGCTC	8632	False	NA	-6	True	AATAAA	-16	NA	118139386	118055000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_118056921_118059841_118059997_118061651_118061724_118068045_118068123_118073045_118073158_118073590_118073740_118074707_118074821_118075797_118075879_118076206_118076326_118076585_118076653_118083222_118083288_118084440_118084524_118139264
transcript_17983.nnic	chr11	-	1740	10	NNC	ENSMUSG00000017132.18	novel	545	6	NA	NA	15	3873	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	11.5256022043466	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCCGAGTTTAGGTTTAC	8615	False	NA	NA	False	AATAAA	-26	NA	118139403	118071924	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_118072737_118073045_118073158_118073590_118073740_118074707_118074821_118075797_118075879_118076206_118076326_118076585_118076653_118083222_118083288_118084440_118084524_118139264
transcript_17984.nic	chr11	-	1057	8	ISM	ENSMUSG00000017132.18	ENSMUST00000017276.14	3135	13	-17	18349	15	2448	5prime_fragment	FALSE	canonical	3	39	junction_5	3.37457480314792	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATTTCTTTTTTCCTTAA	8615	False	NA	NA	False	NA	NA	NA	118139403	118073349	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_118073740_118074707_118074821_118075797_118075879_118076206_118076326_118076585_118076653_118083222_118083288_118084440_118084524_118139264
transcript_17985.nnic	chr11	-	701	3	NNC	ENSMUSG00000017132.18	novel	1592	14	NA	NA	78992	16	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	0.5	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTGGCCTTAATTTCATG	NA	False	NA	NA	False	AATACA	-14	NA	118024576	118022828	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_118023202_118024122_118024201_118024326
transcript_17987.nic	chr11	-	2480	14	ISM	ENSMUSG00000033909.18	ENSMUST00000106296.9	5655	21	-18	8945	-5	-6208	5prime_fragment	FALSE	canonical	3	126	junction_5	7.95549752236794	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTCATGTCTCCTCCAC	NA	False	NA	NA	False	NA	NA	NA	118181075	118159421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_118160039_118162957_118163097_118163776_118163878_118164341_118164483_118165793_118165906_118166964_118167048_118167585_118167657_118168093_118168162_118170030_118170134_118170641_118170753_118175684_118175907_118176563_118176826_118178492_118178650_118180782
transcript_17988.known	chr11	-	1821	4	FSM	ENSMUSG00000033909.18	ENSMUST00000151433.2	1821	4	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_3	10.9848380355227	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATAAAAAAATAAAAAT	NA	False	NA	NA	False	NA	NA	NA	118180898	118174620	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_118175907_118176563_118176826_118178492_118178650_118180782
transcript_17990.known	chr11	-	5655	21	FSM	ENSMUSG00000033909.18	ENSMUST00000106296.9	5655	21	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_6	17.6138439870461	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTCTGTGTCTGCCTTGT	NA	False	NA	-4	True	AATAAA	-25	NA	118181057	118150476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_118152374_118152804_118152957_118153214_118153331_118153860_118153963_118154468_118154669_118155523_118156067_118158627_118158759_118159369_118160039_118162957_118163097_118163776_118163878_118164341_118164483_118165793_118165906_118166964_118167048_118167585_118167657_118168093_118168162_118170030_118170134_118170641_118170753_118175684_118175907_118176563_118176826_118178492_118178650_118180782
transcript_17991.known	chr11	-	718	5	FSM	ENSMUSG00000017466.10	ENSMUST00000155707.3	718	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	12.913171570145	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGGCTGACAGAGCCCC	2032	False	NA	-119	True	NA	NA	NA	118246566	118194526	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_118194723_118201401_118201527_118208244_118208354_118210934_118211036_118246379
transcript_17992.known	chr11	-	2330	6	FSM	ENSMUSG00000033880.12	ENSMUST00000043722.10	2330	6	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	1.85472369909914	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAAGTTTGTTCATCCATAC	9875	False	NA	NA	False	ATTAAA	-18	NA	118292918	118283576	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_118284949_118287416_118287670_118288946_118289079_118289205_118289398_118290553_118290628_118292611
transcript_17993.known	chr11	-	1600	6	FSM	ENSMUSG00000025575.15	ENSMUST00000106289.9	1600	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	74.5133545077659	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCGTTTGCTTTTTTTCTT	9021	False	NA	NA	False	CATAAA	-17	NA	118309849	118298469	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_118298921_118299506_118299711_118300905_118301017_118301678_118302338_118308399_118308481_118309755
transcript_17995.known	chr11	-	2873	5	FSM	ENSMUSG00000025575.15	ENSMUST00000106288.8	2873	5	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_4	37.662979170533	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTCTTGTCTATGTTGGC	8992	False	NA	-1	True	AATAAA	-17	NA	118309878	118297114	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_118298921_118299506_118299711_118301678_118302338_118308399_118308481_118309755
transcript_17996.known	chr11	-	1476	5	FSM	ENSMUSG00000025575.15	ENSMUST00000106287.8	1476	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	67.913547985656	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCGTTTGCTTTTTTTCTT	8992	False	NA	NA	False	CATAAA	-17	NA	118309878	118298469	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_118298921_118299506_118299711_118301678_118302338_118308399_118308481_118309797
transcript_17998.known	chr11	-	2995	5	FSM	ENSMUSG00000025575.15	ENSMUST00000092378.10	2995	5	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_4	68.7786304021823	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTCTCTTGTCTATGTTGG	9021	False	NA	-2	True	AATAAA	-16	NA	118309849	118297115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_118298921_118299506_118299711_118301678_118302338_118308399_118308633_118309755
transcript_18.known	ERCC-00041	+	1121	1	FSM	ERCC-00041A	EF011069	1121	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1121	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00041_+_0_1100
transcript_18003.known	chr11	+	3807	14	FSM	ENSMUSG00000033857.13	ENSMUST00000171769.8	3807	14	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	29.6532225814911	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCACGGCCCCCAGTCCCG	NA	False	NA	NA	False	NA	NA	NA	118367785	118379913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_118367931_118369708_118369780_118369915_118370114_118372101_118372251_118372699_118372858_118373357_118373507_118373707_118373874_118375243_118375348_118375665_118375775_118375949_118376141_118376582_118376732_118377273_118377380_118377647_118377763_118377916
transcript_18010.known	chr11	+	3807	5	FSM	ENSMUSG00000025577.8	ENSMUST00000026662.8	3807	5	0	0	0	0	multi-exon	TRUE	canonical	3	204	junction_1	10.9630059746403	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGCTGTTCTCTTCCCC	NA	False	NA	13	True	AATAAA	-15	NA	118913787	118922096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_118914007_118914083_118914128_118915000_118915067_118917275_118917382_118918724
transcript_18012.known	chr11	-	3580	5	FSM	ENSMUSG00000025578.10	ENSMUST00000026663.8	3580	5	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_4	2.91547594742265	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACGTGTCTTGGCTTCAT	NA	False	NA	NA	False	AATATA	-14	NA	118931795	118927130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_118930346_118930757_118930825_118930919_118930986_118931173_118931218_118931607
transcript_18013.known	chr11	-	5179	5	FSM	ENSMUSG00000039989.8	ENSMUST00000026665.8	5179	5	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_3	7	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTCTTTTTCTTTTATGT	NA	False	NA	NA	False	AATAAA	-17	NA	118977047	118968398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_118973128_118973342_118973410_118975388_118975455_118976582_118976627_118976774
transcript_18015.known	chr11	+	510	2	FSM	ENSMUSG00000087404.2	ENSMUST00000143291.2	510	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAAACCTTGGTCTCCTGT	NA	False	NA	NA	False	NA	NA	NA	119110985	119113299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_119111170_119112973
transcript_18016.known	chr11	-	6986	12	FSM	ENSMUSG00000039976.5	ENSMUST00000036113.4	6986	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.08100420768356	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATGGTCCTGTGCCTTGA	NA	False	NA	-1	True	AATAAA	-15	NA	119119325	119033870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_119038643_119039756_119039904_119041853_119042034_119044714_119044902_119045907_119046043_119046845_119046995_119047468_119047637_119048565_119048714_119049556_119049719_119099596_119100195_119101330_119101567_119119221
transcript_18018.known	chr11	+	799	5	FSM	ENSMUSG00000039963.21	ENSMUST00000133788.8	799	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	2.69258240356725	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCCCAGTACCAGGAGGT	NA	False	NA	NA	False	NA	NA	NA	119144378	119155262	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_119144538_119145167_119145289_119150680_119150870_119153900_119154060_119155091
transcript_18019.known	chr11	+	1662	4	FSM	ENSMUSG00000039963.21	ENSMUST00000126652.2	1662	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	4.02768199119819	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGGTCAGAAGAGTT	4631	False	NA	NA	False	AATAAA	-13	NA	119149752	119156062	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_119150096_119150680_119150870_119153900_119154060_119155091
transcript_18024.nnic	chr11	-	774	3	Antisense	novelGene_ENSMUSG00000039963.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_2	0.5	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGGCTCCACGGGCGT	7492	False	NA	NA	False	AATAAA	-13	NA	119143784	119142597	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr11_-_119142994_119143272_119143468_119143601
transcript_18026.nnic	chr11	-	1021	3	Antisense	novelGene_ENSMUSG00000039963.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_2	0.5	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGGCTCCACGGGCGT	7035	False	NA	NA	False	AATAAA	-13	NA	119144241	119142597	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr11_-_119142994_119143272_119143468_119143811
transcript_18028.nnic	chr11	-	812	3	Antisense	novelGene_ENSMUSG00000039963.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_2	1	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGGCTCCACGGGCGT	7483	False	NA	NA	False	AATAAA	-13	NA	119143793	119142597	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr11_-_119142994_119143272_119143497_119143601
transcript_18031.nnic	chr11	-	501	2	Antisense	novelGene_ENSMUSG00000039963.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGGTGGAGACGACTCT	65	False	NA	NA	False	NA	NA	NA	119133731	119133010	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr11_-_119133299_119133518
transcript_18033.known	chr11	+	3363	20	FSM	ENSMUSG00000025579.15	ENSMUST00000026666.13	3363	20	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	100.783495768854	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTCACGTCACCTCATG	NA	False	NA	19	True	AATAAA	-20	NA	119158851	119176280	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_119158918_119160913_119161505_119163695_119163842_119164800_119164967_119165040_119165138_119165466_119165587_119165681_119165801_119165885_119166018_119167667_119167779_119168326_119168441_119168519_119168605_119169090_119169209_119169701_119169836_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174639_119174884_119175050_119175272_119175426_119175830
transcript_18034.known	chr11	+	3633	20	FSM	ENSMUSG00000025579.15	ENSMUST00000106259.9	3633	20	0	0	0	0	multi-exon	TRUE	canonical	3	393	junction_7	40.3001893687597	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTCACGTCACCTCATG	NA	False	NA	19	True	AATAAA	-20	NA	119158712	119176280	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_119159049_119160913_119161505_119163695_119163842_119164800_119164967_119165040_119165138_119165466_119165587_119165681_119165801_119165885_119166018_119167667_119167779_119168326_119168441_119168519_119168605_119169090_119169209_119169701_119169836_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174639_119174884_119175050_119175272_119175426_119175830
transcript_18037.known	chr11	-	1509	12	FSM	ENSMUSG00000025580.16	ENSMUST00000026667.15	1509	12	0	0	0	0	multi-exon	FALSE	canonical	2	960	junction_1	150.634415963708	7488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAGTGCAGATCTTTGT	NA	False	NA	-10	True	ATTAAA	-20	NA	119190915	119179188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_119179386_119179485_119179614_119179694_119179803_119183644_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630_119188704_119190653
transcript_18038.known	chr11	-	466	3	FSM	ENSMUSG00000025580.16	ENSMUST00000129044.8	466	3	0	0	0	0	multi-exon	FALSE	canonical	2	960	junction_1	268	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGAGTGCAGATCTTTG	6687	False	NA	-11	True	ATTAAA	-19	NA	119179836	119179189	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_119179386_119179485_119179614_119179694
transcript_18039.known	chr11	-	377	2	FSM	ENSMUSG00000025580.16	ENSMUST00000134743.2	377	2	0	0	0	0	multi-exon	FALSE	canonical	3	1442	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGCGTTGCTGGTGTTCTG	NA	False	NA	NA	False	NA	NA	NA	119190844	119188517	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_119188704_119190653
transcript_18043.known	chr11	+	2695	17	FSM	ENSMUSG00000039908.15	ENSMUST00000050880.8	2695	17	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	16.3122605346408	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGATGTGTGTGTGGTGT	NA	False	NA	NA	False	ATTAAA	-24	NA	119246382	119271905	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_119246462_119247633_119247860_119248803_119248997_119250122_119250209_119253042_119253123_119254225_119254369_119259489_119259666_119260018_119260092_119261574_119261626_119263936_119263998_119265310_119265367_119265590_119265732_119267607_119267736_119267994_119268095_119268519_119268654_119270684_119270758_119271010
transcript_18049.nnic	chr11	+	1370	3	NNC	ENSMUSG00000039908.15	novel	2695	17	NA	NA	16172	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	43	55	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTAAAATACAATATTCTG	1595	False	NA	NA	False	ATTAAA	-45	NA	119269646	119271875	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_119270079_119270684_119270758_119271010
transcript_18054.known	chr11	-	626	3	FSM	ENSMUSG00000109408.2	ENSMUST00000207273.2	626	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATACCCGACACTGGTGC	9030	False	NA	NA	False	NA	NA	NA	119382061	119368623	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_119368958_119379727_119379827_119381868
transcript_18057.known	chr11	+	5070	9	FSM	ENSMUSG00000039850.17	ENSMUST00000106244.9	5070	9	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	7.28010988928052	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAGAAAGAAAAA	6254	False	NA	NA	False	NA	NA	NA	119382172	119402249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_119382286_119382610_119382783_119390352_119390488_119390671_119390712_119391416_119391530_119393118_119393188_119393524_119393654_119395916_119395994_119398027
transcript_18059.known	chr11	+	1184	8	FSM	ENSMUSG00000039850.17	ENSMUST00000129327.9	1184	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	15.3143923237227	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTCCTGGCTTTACCCTC	6296	False	NA	NA	False	AATACA	-8	NA	119382214	119398577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_119382286_119390352_119390488_119390671_119390712_119391416_119391530_119393118_119393188_119393524_119393654_119395916_119395994_119398027
transcript_1806.known	chr1	+	1723	9	FSM	ENSMUSG00000026096.15	ENSMUST00000135614.8	1723	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	64.608435981689	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATCATTTCGTGTTTCA	NA	False	NA	11	True	AATAAA	-31	NA	53352831	53365326	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_53353018_53354014_53354259_53357060_53357449_53359101_53359456_53360238_53360370_53360463_53360544_53360654_53360727_53362325_53362430_53365162
transcript_18060.known	chr11	+	5126	8	FSM	ENSMUSG00000039850.17	ENSMUST00000106245.9	5126	8	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	3.65892813567591	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAAATACACTACCAAC	6537	False	NA	NA	False	NA	NA	NA	119382455	119402263	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_119382783_119390352_119390488_119390671_119390712_119391416_119391530_119393118_119393188_119393524_119393654_119395916_119395994_119398027
transcript_18061.known	chr11	+	1099	7	FSM	ENSMUSG00000039850.17	ENSMUST00000153204.9	1099	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	21.1397466609439	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCGGTTGGCAACCTGTG	6281	False	NA	NA	False	NA	NA	NA	119382199	119398517	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_119382286_119390352_119390488_119391416_119391530_119393118_119393188_119393524_119393654_119395916_119395994_119398027
transcript_18064.known	chr11	-	5217	5	FSM	ENSMUSG00000025582.5	ENSMUST00000026670.5	5217	5	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_3	7.08872343937891	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCTCATTGGATTCTT	NA	False	NA	NA	False	AGTAAA	-15	NA	119438579	119429544	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_119433521_119434007_119434188_119435417_119435663_119437477_119437686_119437971
transcript_18068.nnic	chr11	+	599	3	NNC	ENSMUSG00000087675.2	novel	1705	4	NA	NA	17245	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	3	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTAGAACTAACCTCACTG	2096	False	NA	NA	False	ATTAAA	-17	NA	119456700	119459872	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_119456892_119459088_119459263_119459638
transcript_18071.known	chr11	+	1557	8	FSM	ENSMUSG00000025371.13	ENSMUST00000026434.13	1557	8	0	0	0	0	multi-exon	FALSE	canonical	3	311	junction_5	11.6303613925986	948	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGTTTAGTGTCTTGGT	NA	False	NA	18	True	ATTAAA	-33	NA	119804635	119810374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_119804764_119806238_119806349_119806457_119806546_119806850_119806938_119807506_119807573_119807754_119807836_119808809_119808865_119809432
transcript_18075.known	chr11	+	2442	15	FSM	ENSMUSG00000025372.17	ENSMUST00000106233.2	2442	15	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_13	13.1158495799579	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGTGTGTGGTCTGTTGT	NA	False	NA	10	True	AATAAA	-16	NA	119833588	119897608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_119834075_119847927_119848004_119850982_119851070_119871614_119871677_119872218_119872291_119872814_119872953_119884521_119884675_119887348_119887574_119887714_119887917_119888314_119888517_119889459_119889529_119889960_119890124_119891377_119891413_119893863_119893912_119897184
transcript_18076.known	chr11	+	3518	14	FSM	ENSMUSG00000025372.17	ENSMUST00000075180.12	3518	14	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_13	10.9230769230769	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGAGTTGGTCTGTGCCTCC	NA	False	NA	NA	False	AATAAA	-17	NA	119833588	119893447	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_119834075_119847927_119848004_119850982_119851070_119871614_119871677_119872218_119872291_119872814_119872953_119884521_119884675_119887348_119887574_119887714_119887917_119888314_119888517_119889459_119889529_119889960_119890124_119891377_119891413_119891899
transcript_18077.known	chr11	+	2394	14	FSM	ENSMUSG00000025372.17	ENSMUST00000026436.10	2394	14	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_13	8.07215976759687	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGTGTGTGGTCTGTTGT	NA	False	NA	10	True	AATAAA	-16	NA	119833588	119897608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_119834075_119847927_119848004_119850982_119851070_119871614_119871677_119872218_119872291_119872814_119872953_119884521_119884675_119887348_119887574_119887714_119887917_119888314_119888517_119889459_119889529_119889960_119890124_119891377_119891413_119897184
transcript_1808.known	chr1	+	1868	8	FSM	ENSMUSG00000026096.15	ENSMUST00000027265.10	1868	8	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_2	14.7537611946159	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGGCCTTGTGTGTTGTT	NA	False	NA	NA	False	AATAAA	-18	NA	53352782	53365502	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_53353018_53354014_53354259_53357060_53357449_53359101_53359456_53360238_53360370_53360654_53360727_53362325_53362430_53365162
transcript_18088.known	chr11	-	2770	13	FSM	ENSMUSG00000025377.15	ENSMUST00000093901.12	2770	13	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_11	8.42944574426786	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGCCACTTGGGCTGGT	NA	False	NA	-8	True	AATAAA	-16	NA	119989557	119981356	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_119982839_119983676_119983812_119984070_119984150_119984242_119984357_119984516_119984692_119984939_119985144_119986169_119986242_119986359_119986436_119986629_119986698_119987406_119987501_119987703_119987796_119988334_119988408_119989451
transcript_18096.known	chr11	+	427	3	FSM	ENSMUSG00000078572.4	ENSMUST00000185558.2	427	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	466	1446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAGATGATTTAATTTTG	NA	False	NA	19	True	NA	NA	NA	119989769	119991189	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_119989892_119989973_119990089_119990999
transcript_18097.known	chr11	+	401	2	FSM	ENSMUSG00000078572.4	ENSMUST00000186913.2	401	2	0	0	0	0	multi-exon	FALSE	canonical	3	883	junction_1	0	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATAAGGAACTGGTCTCTC	NA	False	NA	6	True	TATAAA	-6	NA	119989924	119991240	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_119990085_119990999
transcript_18098.known	chr11	-	4052	17	FSM	ENSMUSG00000061306.17	ENSMUST00000179094.8	4052	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	187.660889305683	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTCGAGTCGAGTTGGT	5030	False	NA	-12	True	AATAAA	-12	NA	120042138	119995277	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_119996863_119997259_119997437_120000197_120000222_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120032425_120032472_120038546_120038665_120041805
transcript_18099.known	chr11	-	4554	16	FSM	ENSMUSG00000061306.17	ENSMUST00000045402.14	4554	16	0	0	0	0	multi-exon	FALSE	canonical	3	392	junction_1	66.2227218474814	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTCATGTATGTGTATTA	4996	False	NA	NA	False	ATTAAA	-5	NA	120042172	119994785	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_119996863_119997259_119997437_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120032425_120032472_120038546_120038665_120041805
transcript_181.known	SIRV2	+	523	1	FSM	SIRV2B	SIRV205	523	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6027	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCGTCTACCGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	1108	1631	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV2_+_1100_1600
transcript_18100.known	chr11	-	1672	11	FSM	ENSMUSG00000061306.17	ENSMUST00000076697.13	1672	11	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	172.084979007466	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCAATGCTGCCTTTCCTT	4996	False	NA	NA	False	AATAAA	-17	NA	120042172	120009697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120009971_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120032425_120032472_120038546_120038665_120041805
transcript_18104.nic	chr11	-	1268	2	ISM	ENSMUSG00000075389.4	ENSMUST00000145437.2	646	3	-140	255	-140	-255	5prime_fragment	FALSE	canonical	1	2	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGATTTTTTTTTTCTCTCT	6003	False	NA	-3	True	AATAAA	-15	NA	120080818	120078787	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_120079503_120080265
transcript_18105.known	chr11	-	2615	2	FSM	ENSMUSG00000075389.4	ENSMUST00000155681.2	2615	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGACCTTGTTTTTTCCTGG	7244	False	NA	NA	False	ATTAAA	-13	NA	120079577	120076225	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120078578_120079314
transcript_18106.known	chr11	-	1588	2	FSM	ENSMUSG00000043993.7	ENSMUST00000139014.2	1588	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTGCAGTATTGCTACCG	NA	False	NA	1	True	NA	NA	NA	120122411	120120627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120122125_120122320
transcript_1811.known	chr1	+	1592	7	FSM	ENSMUSG00000026096.15	ENSMUST00000151296.8	1592	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_5	65.9858991670864	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCGTGTTTCAAGTGTTT	NA	False	NA	18	True	AATAAA	-38	NA	53352812	53365333	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_53353018_53354014_53354259_53357065_53357449_53359101_53359456_53360238_53360370_53362325_53362430_53365162
transcript_18114.known	chr11	-	1952	6	FSM	ENSMUSG00000062825.16	ENSMUST00000071555.13	1952	6	0	0	0	0	multi-exon	TRUE	canonical	3	5636	junction_4	454.292680988809	27139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTTTTTCTGGTTTGG	NA	False	NA	-21	True	AATAAA	-18	NA	120239368	120236515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794_120238924_120239250
transcript_18115.known	chr11	-	1827	5	FSM	ENSMUSG00000062825.16	ENSMUST00000106215.11	1827	5	0	0	0	0	multi-exon	FALSE	canonical	3	5636	junction_4	437.152933765747	3647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCATTGTTTTTCTGGTTTG	NA	False	NA	-22	True	AATAAA	-17	NA	120238917	120236516	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794
transcript_18116.known	chr11	+	619	2	FSM	ENSMUSG00000043644.5	ENSMUST00000143813.2	619	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGGAGCTCAACGTCTAAA	2995	False	NA	NA	False	AATAAA	-19	NA	120239503	120242016	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120239689_120241582
transcript_18117.known	chr11	-	3193	10	FSM	ENSMUSG00000025384.16	ENSMUST00000026448.10	3193	10	0	0	0	0	multi-exon	FALSE	canonical	1	16	junction_4	19.8612470857816	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTCTGTGTTGTGCTCTG	NA	False	NA	-3	True	NA	NA	NA	120269590	120260387	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120260879_120261109_120261246_120261520_120261608_120262935_120263053_120263932_120264070_120264707_120265478_120266242_120266400_120267531_120268488_120269153_120269273_120269367
transcript_18120.known	chr11	-	1779	3	FSM	ENSMUSG00000025384.16	ENSMUST00000148520.2	1779	3	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	20.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-29	NA	120269535	120266995	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120268488_120269153_120269273_120269367
transcript_18122.known	chr11	-	372	2	FSM	ENSMUSG00000039670.3	ENSMUST00000137632.2	372	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCTCTACCAGGATGGCG	9	True	NA	NA	False	NA	NA	NA	120348762	120347710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120347989_120348668
transcript_18123.known	chr11	-	813	2	FSM	ENSMUSG00000039670.3	ENSMUST00000044007.3	813	2	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	0	533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGCAGGGGCTTTTGTGT	959	False	NA	-6	True	AATAAA	-18	NA	120348894	120347431	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120347989_120348638
transcript_18125.known	chr11	+	2778	6	FSM	ENSMUSG00000049957.15	ENSMUST00000058370.14	2778	6	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_3	16.7164589551735	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATGAGAACATTCTTGTT	208	False	NA	NA	False	AATAAA	-20	NA	120348940	120355184	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120349105_120349437_120349572_120350867_120351091_120352541_120352625_120352831_120352912_120353090
transcript_18128.known	chr11	+	336	3	FSM	ENSMUSG00000049957.15	ENSMUST00000175970.8	336	3	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_2	68	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTCAAGCAAAGGAAGGGGG	235	False	NA	NA	False	NA	NA	NA	120348967	120350937	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120349105_120349437_120349572_120350872
transcript_18129.known	chr11	+	375	2	FSM	ENSMUSG00000049957.15	ENSMUST00000140308.2	375	2	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGAGTGCAGGGTATGGG	231	False	NA	NA	False	NA	NA	NA	120348963	120349671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120349105_120349437
transcript_18130.known	chr11	-	588	5	FSM	ENSMUSG00000057594.13	ENSMUST00000141654.8	588	5	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	74.6408065336917	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAGGTGTTTGATAGGA	NA	False	NA	-91	True	NA	NA	NA	120358291	120356416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120356648_120356809_120356926_120357479_120357559_120358007_120358067_120358188
transcript_18131.known	chr11	-	911	5	FSM	ENSMUSG00000057594.13	ENSMUST00000076921.7	911	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	70.9048658414922	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCTCCCACCAAGAAGTTG	NA	False	NA	62	True	NA	NA	NA	120358426	120356263	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120356648_120356809_120356926_120357479_120357594_120358007_120358067_120358188
transcript_18138.known	chr11	-	429	4	FSM	ENSMUSG00000057594.13	ENSMUST00000150688.2	429	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	81.6999932000541	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGACCATAGGGTCTGCAG	NA	False	NA	NA	False	NA	NA	NA	120358259	120356740	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120356926_120357479_120357594_120358007_120358067_120358188
transcript_1814.nnic	chr1	+	1312	7	NIC	ENSMUSG00000026096.15	novel	1723	9	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	3	27	junction_2	47.461387815079	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATCATTTCGTGTTTCA	NA	False	NA	11	True	AATAAA	-31	NA	53352774	53365326	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_53353018_53354014_53354259_53359101_53359456_53360238_53360370_53360654_53360727_53362325_53362430_53365162
transcript_18140.known	chr11	-	2206	3	FSM	ENSMUSG00000057594.13	ENSMUST00000143233.8	2206	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	83.5	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTCTTGGCCTGGAGAGA	NA	False	NA	NA	False	CATAAA	-26	NA	120358433	120355691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120357594_120358007_120358067_120358188
transcript_18141.known	chr11	+	2900	22	FSM	ENSMUSG00000025793.18	ENSMUST00000106205.9	2900	22	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_14	47.8204313112466	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCATGATTGATTGTTCG	8182	False	NA	13	True	AATAAA	-14	NA	120358460	120374805	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120358590_120359834_120359920_120360425_120360502_120360860_120360954_120362305_120362430_120363428_120363482_120365081_120365151_120365945_120366071_120367954_120368034_120368114_120368214_120368344_120368441_120369161_120369201_120369287_120369432_120369520_120369581_120369915_120370124_120370378_120370552_120370624_120370766_120370849_120371025_120373355_120373490_120373569_120373690_120373840_120373928_120374214
transcript_18156.known	chr11	+	1316	5	FSM	ENSMUSG00000039640.8	ENSMUST00000043627.8	1316	5	0	0	0	0	multi-exon	FALSE	canonical	3	1076	junction_2	33.5186515241887	2879	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAAAGTGTAACCCTGGCC	8955	False	NA	NA	False	NA	NA	NA	120375438	120379891	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120375595_120376068_120376256_120376481_120376569_120378922_120379061_120379143
transcript_18158.known	chr11	+	2023	11	FSM	ENSMUSG00000025792.10	ENSMUST00000026899.4	2023	11	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_8	8.74356906531881	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGGGGGCTGGCAGATC	NA	False	NA	23	True	AATAAA	-37	NA	120382665	120390013	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120382903_120385302_120385423_120385785_120385901_120385985_120386035_120386271_120386314_120387248_120387293_120387461_120387533_120387839_120387933_120388209_120388288_120388745_120388803_120388896
transcript_18160.known	chr11	+	1658	10	FSM	ENSMUSG00000025792.10	ENSMUST00000144706.8	1658	10	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_5	8.28355503094036	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTTCTGCTTACCAAATG	NA	False	NA	NA	False	NA	NA	NA	120382713	120389419	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120382903_120385302_120385423_120385785_120385901_120385985_120386035_120386271_120386314_120387248_120387293_120387461_120387533_120387839_120388288_120388745_120388803_120388896
transcript_18163.known	chr11	+	1957	14	FSM	ENSMUSG00000025127.16	ENSMUST00000026119.8	1957	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.737820234355803	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTCGTGGACAGCAGGCT	NA	False	NA	NA	False	AGTAAA	-24	NA	120421524	120429810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120421660_120425505_120425646_120425741_120425845_120426885_120426994_120427070_120427193_120427287_120427395_120427482_120427640_120427720_120427881_120427954_120428016_120428144_120428215_120428528_120428618_120428737_120428877_120428942_120428985_120429286
transcript_18164.known	chr11	-	563	2	FSM	ENSMUSG00000084983.8	ENSMUST00000140989.2	563	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTTCTGTTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	120421380	120417680	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120418030_120421166
transcript_18166.known	chr11	-	1205	5	FSM	ENSMUSG00000061111.9	ENSMUST00000034913.5	1205	5	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_4	30.2861354418156	653	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTCCATGGCAGTCTGT	NA	False	NA	-24	True	AATAAA	-17	NA	120440553	120433713	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120434575_120434729_120434832_120435506_120435626_120435702_120435755_120440482
transcript_18167.known	chr11	-	1256	4	FSM	ENSMUSG00000061111.9	ENSMUST00000135515.2	1256	4	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_3	32.7244387100664	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTCCATGGCAGTCTGT	NA	False	NA	-24	True	AATAAA	-17	NA	120440527	120433713	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120434575_120434729_120434832_120435506_120435755_120440482
transcript_18171.known	chr11	-	2150	6	FSM	ENSMUSG00000025132.14	ENSMUST00000067936.6	2150	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_5	1338.58961597646	1363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATTGTGTGGTCTGTGC	NA	False	NA	-15	True	AATAAA	-17	NA	120472206	120468934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120471815
transcript_18177.known	chr11	-	1867	6	FSM	ENSMUSG00000025132.14	ENSMUST00000106197.10	1867	6	0	0	0	0	multi-exon	TRUE	canonical	3	3168	junction_5	160.793780974265	5549	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGGTCTGTGCAGCTT	NA	False	NA	-10	True	AATAAA	-22	NA	120472450	120468929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120472347
transcript_18181.known	chr11	-	3527	6	FSM	ENSMUSG00000025134.3	ENSMUST00000026125.3	3527	6	0	0	0	0	multi-exon	FALSE	canonical	3	3672	junction_5	281.391257859941	549	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGATCACACCTCGTCTCT	4306	False	NA	3	True	AATAAA	-29	NA	120489191	120482946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120485694_120485805_120485981_120486080_120486145_120486745_120486894_120488460_120488593_120488930
transcript_18189.known	chr11	+	962	3	FSM	ENSMUSG00000025135.13	ENSMUST00000093140.5	962	3	0	0	0	0	multi-exon	FALSE	canonical	3	1006	junction_1	419	4355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCCAAAACCTTCATCGTA	4011	False	NA	129	True	AATAAA	-17	NA	120489357	120496602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120489697_120490067_120490195_120496106
transcript_18190.known	chr11	+	3229	3	FSM	ENSMUSG00000025135.13	ENSMUST00000026128.10	3229	3	0	0	0	0	multi-exon	FALSE	canonical	3	903	junction_1	470.5	2887	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCACTTTTGATCATGGT	3900	False	NA	NA	False	NA	NA	NA	120489246	120499024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120489431_120490067_120490195_120496106
transcript_18192.known	chr11	+	542	2	FSM	ENSMUSG00000044034.12	ENSMUST00000106195.3	542	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGCTAAGGGTTGCTGGA	1208	False	NA	NA	False	AATAAA	-14	NA	120499302	120499919	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120499566_120499640
transcript_18193.known	chr11	+	418	2	FSM	ENSMUSG00000044034.12	ENSMUST00000061309.5	418	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCTAGCTCCCACCATGC	1236	False	NA	NA	False	NA	NA	NA	120499330	120499859	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120499566_120499676
transcript_18194.known	chr11	+	530	2	FSM	ENSMUSG00000044034.12	ENSMUST00000106194.8	530	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGCTAAGGGTTGCTGGA	1208	False	NA	NA	False	AATAAA	-14	NA	120499302	120499919	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120499554_120499640
transcript_18195.known	chr11	-	1881	14	FSM	ENSMUSG00000025137.16	ENSMUST00000026129.16	1881	14	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_7	79.5574296680368	216	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTAGGCTCCCGACCCC	NA	False	NA	-6	True	AATAAA	-16	NA	120508762	120500912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120502910_120503288_120503428_120503855_120503910_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
transcript_18196.known	chr11	-	840	4	FSM	ENSMUSG00000051510.14	ENSMUST00000106181.8	840	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	166.65399951863	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGCACTGGGCTGAGCCC	9125	False	NA	NA	False	NA	NA	NA	120521462	120519966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120520563_120520643_120520708_120520811_120520843_120521313
transcript_182.known	SIRV2	+	424	1	FSM	SIRV2C	SIRV206	424	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12756	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGAACACACTTCCATCCAC	NA	False	NA	NA	False	NA	NA	NA	4033	4457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV2_+_4000_4500
transcript_18200.known	chr11	-	732	3	FSM	ENSMUSG00000051510.14	ENSMUST00000106180.2	732	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	175.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGGCAGCCCCGTCCCT	9613	False	NA	NA	False	NA	NA	NA	120520974	120520057	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120520563_120520643_120520708_120520811
transcript_18201.nnic	chr11	-	1652	3	NNC	ENSMUSG00000051510.14	novel	4923	3	NA	NA	623	676	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	179	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCTGCGAGCCTACCGGA	8025	False	NA	NA	False	TATAAA	-34	NA	120523759	120519156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_120520563_120520643_120520708_120523577
transcript_18203.known	chr11	-	4923	3	FSM	ENSMUSG00000051510.14	ENSMUST00000058162.14	4923	3	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_2	28	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTGGTATTTCTTTGAA	7358	False	NA	-1	True	AATAAA	-16	NA	120524426	120515942	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120520563_120520643_120520708_120524187
transcript_18207.known	chr11	-	1727	10	FSM	ENSMUSG00000025138.15	ENSMUST00000080202.12	1727	10	0	0	0	0	multi-exon	FALSE	canonical	2	54	junction_9	11.3376897945103	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTGTCCCGATGACTGT	NA	False	NA	-1	True	ATTAAA	-15	NA	120515840	120509197	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120509876_120510988_120511096_120511249_120511331_120511472_120511710_120511782_120511882_120512806_120512880_120512966_120513038_120515315_120515421_120515498_120515637_120515702
transcript_18208.known	chr11	-	1218	6	FSM	ENSMUSG00000025138.15	ENSMUST00000146809.2	1218	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	35.6011235777749	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTAAGCCTCCAGTCTGAG	NA	False	NA	-49	True	NA	NA	NA	120511803	120509245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120509876_120509974_120510117_120510988_120511096_120511249_120511331_120511472_120511710_120511782
transcript_18209.known	chr11	-	1925	8	FSM	ENSMUSG00000025138.15	ENSMUST00000133625.8	1925	8	0	0	0	0	multi-exon	FALSE	canonical	2	54	junction_7	11.9965981572669	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGGTGTCCCGATGACT	NA	False	NA	-3	True	ATTAAA	-13	NA	120515825	120509199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120509876_120510988_120511096_120511249_120511882_120512806_120512880_120512966_120513038_120515315_120515421_120515498_120515637_120515702
transcript_18227.known	chr11	-	1861	8	FSM	ENSMUSG00000025140.16	ENSMUST00000026133.15	1861	8	0	0	0	0	multi-exon	FALSE	canonical	3	750	junction_7	93.9428832116752	1288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCCCCAGAGCTCCAGTC	NA	False	NA	-16	True	AATAAA	-13	NA	120534574	120530241	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984_120534114_120534505
transcript_18228.nic	chr11	-	1867	8	NIC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_7	343.012048339592	606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCCCCAGAGCTCCAGTC	NA	False	NA	-16	True	AATAAA	-13	NA	120534603	120530241	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984_120534114_120534528
transcript_1823.known	chr1	-	2442	6	FSM	ENSMUSG00000026095.16	ENSMUST00000027264.10	2442	6	0	0	0	0	multi-exon	FALSE	canonical	3	502	junction_1	45.94344349306	1353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTGTTAATTTTTACCT	NA	False	NA	-2	True	AATAAA	-41	NA	53391911	53383775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_53384139_53385738_53385921_53386173_53387718_53389145_53389222_53390038_53390093_53391688
transcript_18231.nic	chr11	-	1751	7	NIC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	364.341148132107	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCCCCAGAGCTCCAGTC	NA	False	NA	-16	True	AATAAA	-13	NA	120534593	120530241	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120534505
transcript_18240.known	chr11	-	2914	8	FSM	ENSMUSG00000025140.16	ENSMUST00000170556.8	2914	8	0	0	0	0	multi-exon	FALSE	canonical	2	46	junction_1	338.819740166553	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACCTGGCTAGAACTGTT	NA	False	NA	NA	False	NA	NA	NA	120534496	120526537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120528061_120531025_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984
transcript_18241.known	chr11	-	542	5	FSM	ENSMUSG00000025140.16	ENSMUST00000151876.8	542	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_4	420.807854014157	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGCTTCCCAGACGCCTGG	NA	False	NA	NA	False	NA	NA	NA	120534530	120532303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120534505
transcript_18243.known	chr11	-	471	2	FSM	ENSMUSG00000025141.4	ENSMUST00000145047.2	471	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGGCCTGTTACCTTTCC	NA	False	NA	NA	False	AATAAA	-19	NA	120537908	120536857	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120537268_120537847
transcript_1825.known	chr1	-	983	6	FSM	ENSMUSG00000026095.16	ENSMUST00000123519.9	983	6	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_2	221.433872747599	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGGGGTGTAGTAGTT	NA	False	NA	-30	True	AATAAA	-13	NA	53391911	53383803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_53384139_53385738_53385921_53387604_53387718_53389145_53389222_53390038_53390093_53391688
transcript_18253.known	chr11	+	1820	16	FSM	ENSMUSG00000025142.19	ENSMUST00000026135.15	1820	16	0	0	0	0	multi-exon	FALSE	canonical	3	887	junction_3	62.8477525453377	1510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	16	True	AATAAA	-20	NA	120563817	120600273	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120563997_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
transcript_18268.known	chr11	+	1690	15	FSM	ENSMUSG00000025142.19	ENSMUST00000106158.9	1690	15	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_10	252.602010107212	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGAGTTTCTTTTCTG	NA	False	NA	13	True	AATAAA	-17	NA	120563881	120600270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120563997_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
transcript_183.known	SIRV2	-	740	3	FSM	SIRV2A	SIRV204	740	3	0	0	0	0	multi-exon	FALSE	canonical	3	2423	junction_1	198	4739	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTTATCCTATATCGGA	NA	False	NA	NA	False	NA	NA	NA	4732	3643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV2_-_3826_3966_4480_4687
transcript_18304.known	chr11	+	505	2	FSM	ENSMUSG00000025142.19	ENSMUST00000169964.2	505	2	0	0	0	0	multi-exon	FALSE	canonical	3	898	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCACAGAGAGCCTTCTGC	NA	False	NA	NA	False	NA	NA	NA	120563798	120565172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120563997_120564865
transcript_18305.known	chr11	+	2061	2	FSM	ENSMUSG00000025142.19	ENSMUST00000171700.2	2061	2	0	0	0	0	multi-exon	FALSE	canonical	1	28	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120563851	120566808	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120563970_120564865
transcript_18306.known	chr11	+	468	3	FSM	ENSMUSG00000025142.19	ENSMUST00000152990.2	468	3	0	0	0	0	multi-exon	FALSE	canonical	3	981	junction_1	57	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAGCTGAGTTTCTTTTC	797	False	NA	11	True	AATAAA	-15	NA	120599483	120600268	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120599536_120599755_120600073_120600169
transcript_18307.known	chr11	+	520	3	FSM	ENSMUSG00000025142.19	ENSMUST00000151531.2	520	3	0	0	0	0	multi-exon	FALSE	canonical	3	1054	junction_1	20.5	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	899	False	NA	16	True	AATAAA	-20	NA	120599585	120600273	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120599826_120599896_120600073_120600169
transcript_18310.known	chr11	-	700	6	FSM	ENSMUSG00000025144.18	ENSMUST00000106155.4	700	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	401.222631465375	692	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGCTTTCTCTTTGCCA	NA	False	NA	-2	True	AATAAA	-19	NA	120604558	120601767	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120602133_120602215_120602305_120602528_120602583_120602669_120602722_120603265_120603366_120604518
transcript_18314.known	chr11	-	873	6	FSM	ENSMUSG00000025144.18	ENSMUST00000106154.8	873	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	397.451380674417	826	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGCTTTCTCTTTGCCA	NA	False	NA	-2	True	AATAAA	-19	NA	120604558	120601767	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120602133_120602215_120602305_120602528_120602583_120602669_120602722_120603265_120603539_120604518
transcript_18332.known	chr11	-	606	5	FSM	ENSMUSG00000025144.18	ENSMUST00000055424.13	606	5	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_4	137.848422189012	5465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGCTTTCTCTTTGCCA	NA	False	NA	-2	True	AATAAA	-19	NA	120604564	120601767	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120602133_120602215_120602305_120602528_120602583_120602669_120602722_120604518
transcript_18333.known	chr11	-	692	4	FSM	ENSMUSG00000025144.18	ENSMUST00000026137.8	692	4	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_3	156.895577446346	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCCTGCTTTCTCTTTGCC	NA	False	NA	-3	True	AATAAA	-18	NA	120604564	120601768	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120602133_120602215_120602305_120602528_120602722_120604518
transcript_18334.known	chr11	+	2492	18	FSM	ENSMUSG00000025145.14	ENSMUST00000026139.14	2492	18	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_12	7.88805763716247	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCGTCCAGTTCCTTTCT	6064	False	NA	NA	False	GATAAA	-1	NA	120604750	120611954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120604880_120605098_120605355_120605743_120605806_120605975_120606047_120606246_120606426_120606631_120606761_120607881_120607995_120608305_120608365_120608650_120608729_120608862_120608999_120609069_120609148_120609267_120609380_120609475_120609547_120609865_120609959_120610291_120610385_120610759_120610934_120611011_120611160_120611443
transcript_18335.known	chr11	+	2390	17	FSM	ENSMUSG00000025145.14	ENSMUST00000145781.8	2390	17	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_12	14.0844273490263	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATTCTCGTCCAGTTCC	6090	False	NA	NA	False	AATACA	-19	NA	120604776	120611949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120604880_120605098_120605355_120605743_120605806_120605975_120606047_120606246_120606426_120606631_120606761_120607881_120607995_120608305_120608365_120608650_120608729_120608862_120608999_120609069_120609148_120609267_120609380_120609865_120609959_120610291_120610385_120610759_120610934_120611011_120611160_120611443
transcript_1834.known	chr1	+	1910	4	FSM	ENSMUSG00000026097.10	ENSMUST00000027266.4	1910	4	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_2	12.7104506432917	546	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGTTCCTCTGTTTAA	NA	False	NA	93	True	TATAAA	-8	NA	53336253	53349468	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_53336348_53338130_53338312_53344613_53344766_53347985
transcript_18341.known	chr11	+	1076	6	FSM	ENSMUSG00000018012.12	ENSMUST00000018156.12	1076	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	12.4739729036101	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTCTCGCTGTCTGCCC	3798	False	NA	14	True	AATAAA	-14	NA	120612295	120614795	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120612468_120613056_120613129_120613334_120613453_120613631_120613695_120614006_120614167_120614304
transcript_18345.nnic	chr11	+	1115	6	NNC	ENSMUSG00000018012.12	novel	717	5	NA	NA	-82	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	23.4486673395313	144	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTCTCGCTGTCTGCCC	4260	False	NA	14	True	AATAAA	-14	NA	120612757	120614795	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_120612969_120613056_120613129_120613334_120613453_120613631_120613695_120614006_120614167_120614304
transcript_18346.known	chr11	+	717	5	FSM	ENSMUSG00000018012.12	ENSMUST00000134322.2	717	5	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	3.80788655293195	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACCTCCAGTGAAAAAGCCA	4342	False	NA	NA	False	NA	NA	NA	120612839	120614391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120613129_120613334_120613453_120613631_120613695_120614006_120614167_120614304
transcript_18348.nnic	chr11	+	960	5	NNC	ENSMUSG00000018012.12	novel	1076	6	NA	NA	284	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	26.089988501339	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTCTCGCTGTCTGCCC	4626	False	NA	14	True	AATAAA	-14	NA	120613123	120614795	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_+_120613252_120613334_120613453_120613631_120613695_120614006_120614167_120614304
transcript_18351.known	chr11	-	892	8	FSM	ENSMUSG00000039450.12	ENSMUST00000026144.5	892	8	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_3	11.7438650940369	877	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACAGATCTGTGCTATCTG	9984	False	NA	-4	True	AATAAA	-37	NA	120618107	120616224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120616434_120616563_120616682_120616767_120616833_120616913_120617014_120617094_120617138_120617236_120617392_120617824_120617923_120618003
transcript_18352.known	chr11	-	910	7	FSM	ENSMUSG00000039450.12	ENSMUST00000125242.8	910	7	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_3	12.2202018532156	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCTGTGTGCTGATTCTC	6915	False	NA	-30	True	AATAAA	-11	NA	120618070	120616250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120616434_120616563_120616682_120616767_120616833_120616913_120617138_120617236_120617392_120617824_120617923_120618003
transcript_18353.known	chr11	-	830	7	FSM	ENSMUSG00000039450.12	ENSMUST00000106148.10	830	7	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	29.9035486560077	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACAGATCTGTGCTATCTG	6916	False	NA	-4	True	AATAAA	-37	NA	120618069	120616224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120616434_120616563_120616723_120616913_120617014_120617094_120617138_120617236_120617392_120617824_120617923_120618003
transcript_18354.known	chr11	-	914	7	FSM	ENSMUSG00000039450.12	ENSMUST00000122883.2	914	7	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_2	12.5786415094088	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTCCGCCCCTGCAATAAA	6930	False	NA	-60	True	NA	NA	NA	120618055	120616280	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120616682_120616767_120616833_120616913_120617014_120617094_120617138_120617236_120617392_120617824_120617923_120618003
transcript_18355.known	chr11	-	1110	8	FSM	ENSMUSG00000025150.11	ENSMUST00000026148.9	1110	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.45686271816937	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTGCCATTGCACAGGAC	7632	False	NA	NA	False	AATAAA	-23	NA	120622940	120620314	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120620652_120620740_120620859_120621082_120621148_120621249_120621350_120621443_120621487_120621570_120621726_120621831_120621930_120622746
transcript_18357.known	chr11	+	1626	1	FSM	ENSMUSG00000078249.6	ENSMUST00000105046.4	1626	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12607	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTACAAGAGTCCTGCCT	NA	False	NA	NA	False	NA	NA	NA	120653619	120655245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120653600_120655200
transcript_18360.nnic	chr11	+	756	5	NIC	ENSMUSG00000083618.2	novel	732	8	NA	NA	-131	211	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0.866025403784439	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGGGTTTGTAGTCCTGC	NA	False	NA	NA	False	AATAAA	-22	NA	120656004	120658402	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_+_120656188_120656820_120656917_120657255_120657299_120657879_120657998_120658086
transcript_18363.known	chr11	-	2118	8	FSM	ENSMUSG00000025158.8	ENSMUST00000026156.8	2118	8	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_3	23.1137382947714	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGTGTGGCTCCTCTTGTC	NA	False	NA	-6	True	AGTAAA	-17	NA	120675033	120671573	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120672730_120672804_120672891_120673208_120673375_120673454_120673544_120673832_120673987_120674093_120674197_120674560_120674610_120674718
transcript_18369.known	chr11	+	1827	14	FSM	ENSMUSG00000025156.18	ENSMUST00000116305.8	1827	14	0	0	0	0	multi-exon	FALSE	canonical	3	682	junction_1	155.049677093711	1499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAAGGCTCCTTTCCTTTC	1424	False	NA	2	True	ATTAAA	-19	NA	120675130	120679928	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120675169_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
transcript_1837.known	chr1	-	300	4	FSM	ENSMUSG00000117809.2	ENSMUST00000236737.2	300	4	0	0	0	0	multi-exon	FALSE	canonical	3	541	junction_1	43.3999487966928	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCACATAACCATGTGTGG	NA	False	NA	NA	False	NA	NA	NA	53391778	53387637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_53387718_53389145_53389222_53390038_53390093_53391688
transcript_18377.known	chr11	+	2000	14	FSM	ENSMUSG00000025156.18	ENSMUST00000172809.2	2000	14	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_1	255.452956564905	724	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAAGGCTCCTTTCCTTTC	1634	False	NA	2	True	ATTAAA	-19	NA	120675340	120679928	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120675552_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
transcript_18379.known	chr11	+	1925	13	FSM	ENSMUSG00000025156.18	ENSMUST00000100134.10	1925	13	0	0	0	0	multi-exon	TRUE	canonical	3	682	junction_1	150.079122650539	586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGCCCCAAGGCTCCTTTC	1394	False	NA	-3	True	ATTAAA	-14	NA	120675100	120679923	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120675169_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287
transcript_18394.known	chr11	+	798	3	FSM	ENSMUSG00000025156.18	ENSMUST00000132422.2	798	3	0	0	0	0	multi-exon	TRUE	canonical	3	682	junction_1	241.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGGAGTGGAGCCCCCG	1391	False	NA	NA	False	NA	NA	NA	120675097	120677159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120675169_120675946_120676040_120676525
transcript_18397.known	chr11	-	1909	14	FSM	ENSMUSG00000025155.16	ENSMUST00000167023.8	1909	14	0	0	0	0	multi-exon	FALSE	canonical	1	70	junction_13	260.320262471546	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGCAGAGATCTCTAGTG	NA	False	NA	-17	True	AATAAA	-16	NA	120687221	120680027	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682770_120682856_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120686968
transcript_1840.known	chr1	+	598	3	FSM	ENSMUSG00000026096.15	ENSMUST00000135786.8	598	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	79	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTAGTGTTTTCTGACAT	NA	False	NA	NA	False	NA	NA	NA	53352815	53355791	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_53353018_53354014_53354259_53355639
transcript_18400.nic	chr11	-	2134	14	NIC	ENSMUSG00000025155.16	novel	1909	14	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	1	287	junction_5	197.871304777721	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCAGAGATCTCTAGTGA	NA	False	NA	-16	True	AATAAA	-17	NA	120687241	120680026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682770_120682856_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120686764
transcript_18410.known	chr11	-	1863	14	FSM	ENSMUSG00000025155.16	ENSMUST00000106135.8	1863	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	245.913368110366	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCAGAGATCTCTAGTGA	NA	False	NA	-16	True	AATAAA	-17	NA	120687229	120680026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682787_120682852_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120687044
transcript_18414.nic	chr11	-	1453	7	ISM	ENSMUSG00000048445.7	ENSMUST00000056781.5	3403	19	-45	75155	-45	-27892	5prime_fragment	FALSE	canonical	3	22	junction_2	1.37436854187255	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTACTTGTGATAAGTGT	1426	False	NA	NA	False	NA	NA	NA	120823743	120792509	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr11_-_120792902_120794141_120794217_120794348_120794507_120794809_120794912_120810298_120810408_120812345_120812761_120823541
transcript_18416.nnic	chr11	-	937	4	NNC	ENSMUSG00000048445.7	novel	3403	19	NA	NA	10548	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	6.59966329107444	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTCTGTCTTGTCCTACT	NA	False	NA	2	True	ATTAAA	-28	NA	120753949	120717354	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_120717751_120751226_120751453_120751963_120752096_120753766
transcript_18424.nnic	chr11	-	585	2	NNC	ENSMUSG00000048445.7	novel	3403	19	NA	NA	20928	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	0	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTCTGTCTTGTCCTACT	4432	False	NA	2	True	ATTAAA	-28	NA	120743569	120717354	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_120717751_120743380
transcript_18426.known	chr11	-	3403	19	FSM	ENSMUSG00000048445.7	ENSMUST00000056781.5	3403	19	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_6	6.51399253648882	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTCTGTCTTGTCCTACT	1471	False	NA	2	True	ATTAAA	-28	NA	120823698	120717354	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120717751_120751226_120751453_120751963_120752096_120757380_120757503_120764411_120764626_120769703_120769875_120772640_120772742_120776058_120776212_120776675_120776890_120785424_120785560_120786082_120786246_120788634_120788794_120792700_120792902_120794141_120794217_120794348_120794507_120794809_120794912_120810298_120810408_120812345_120812761_120823541
transcript_18427.known	chr11	-	3500	10	FSM	ENSMUSG00000025162.19	ENSMUST00000070575.14	3500	10	0	0	0	0	multi-exon	TRUE	canonical	3	176	junction_1	174.428237039028	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCCTCCCCTTTGTGTGG	1014	False	NA	-11	True	AATAAA	-22	NA	120881918	120852574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120854733_120855773_120855837_120858820_120858961_120859848_120860021_120862392_120862542_120863202_120863374_120863791_120864021_120864646_120864796_120874058_120874170_120881760
transcript_1843.nnic	chr1	-	835	4	NNC	ENSMUSG00000096141.3	novel	732	4	NA	NA	-44621	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1.63299316185545	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTGTGATTTGACTGG	884	False	NA	NA	False	AATAAA	-13	NA	53790564	53737188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_53737688_53737790_53737854_53741176_53741240_53790354
transcript_18430.known	chr11	-	1823	9	FSM	ENSMUSG00000025162.19	ENSMUST00000239115.2	1823	9	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	191.835052844885	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTATGCTATACTTCAGCT	776	False	NA	NA	False	AATAAA	-45	NA	120882156	120849815	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120850122_120858820_120858961_120859848_120860021_120862392_120862542_120863202_120863374_120863791_120864021_120864646_120864796_120874058_120874170_120881760
transcript_18432.known	chr11	-	3675	9	FSM	ENSMUSG00000025162.19	ENSMUST00000018274.10	3675	9	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_1	79.8474130764423	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCCTCCCCTTTGTGTGG	776	False	NA	-11	True	AATAAA	-22	NA	120882156	120852574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120854733_120858820_120858961_120859848_120860021_120862392_120862542_120863202_120863374_120863791_120864021_120864646_120864796_120874058_120874170_120881760
transcript_18434.known	chr11	+	4335	6	FSM	ENSMUSG00000025161.17	ENSMUST00000168579.8	4335	6	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_1	37.4197808652055	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCATGATGTAAATATTTT	NA	False	NA	NA	False	NA	NA	NA	120839906	120851694	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120839977_120844999_120845095_120846051_120846296_120846624_120846769_120847180_120847949_120848680
transcript_18435.known	chr11	+	2386	5	FSM	ENSMUSG00000025161.17	ENSMUST00000100130.10	2386	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	128.437484793186	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGGCTTCCAACCTAAGT	NA	False	NA	NA	False	NA	NA	NA	120839892	120849826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_120839977_120846051_120846296_120846624_120846769_120847180_120847949_120848680
transcript_18437.known	chr11	-	982	4	FSM	ENSMUSG00000025163.7	ENSMUST00000026159.6	982	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	2.49443825784929	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTTGTTTTTGTTGCTTT	7896	False	NA	NA	False	AATAAA	-22	NA	120930244	120927572	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_120927977_120928505_120928643_120928861_120929177_120930118
transcript_18439.known	chr11	-	2046	3	FSM	ENSMUSG00000039337.4	ENSMUST00000039146.4	2046	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	13.5	238	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTTGCAGTCTCCTCAT	NA	False	NA	0	True	AATAAA	-19	NA	121009503	121007040	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_121008523_121008652_121008727_121009013
transcript_18443.known	chr11	+	1745	3	FSM	ENSMUSG00000039329.9	ENSMUST00000039088.9	1745	3	0	0	0	0	multi-exon	FALSE	canonical	3	732	junction_1	1	5168	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTTATGTGTATGGTTT	NA	False	NA	26	True	AATAAA	-20	NA	121036968	121039145	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_121037049_121037353_121037428_121037554
transcript_18444.known	chr11	+	1703	1	FSM	ENSMUSG00000039321.2	ENSMUST00000039044.2	1703	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTCAGGGATCCCCCAACA	NA	False	NA	NA	False	NA	NA	NA	121051096	121052799	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_121051100_121052800
transcript_18448.known	chr11	+	2149	13	FSM	ENSMUSG00000039307.17	ENSMUST00000106117.8	2149	13	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	4.64503916979059	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCCACCAGCAGAAACTCT	NA	False	NA	4	True	AATAAA	-20	NA	121095260	121113473	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_121095669_121098464_121098602_121102867_121102978_121104808_121104897_121105585_121105751_121107718_121107903_121108913_121108986_121109368_121109565_121110666_121110750_121111908_121111988_121112061_121112164_121112326_121112417_121113038
transcript_1845.known	chr1	-	3293	8	FSM	ENSMUSG00000026094.15	ENSMUST00000027263.14	3293	8	0	0	0	0	multi-exon	TRUE	canonical	3	57	junction_1	6.25316246521123	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCCTTAAGTTACTCTTG	686	False	NA	NA	False	AATAAA	-26	NA	53824383	53794664	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_53796930_53800140_53800321_53801747_53801797_53803190_53803318_53805079_53805225_53810768_53810982_53815675_53815839_53824232
transcript_18453.known	chr11	+	885	8	FSM	ENSMUSG00000039307.17	ENSMUST00000128913.8	885	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_5	7.04794079059658	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTGGCTGCCTGCCTACA	NA	False	NA	NA	False	NA	NA	NA	121095600	121110715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_121095669_121098464_121098602_121102867_121102978_121104808_121104897_121105585_121105751_121108913_121108986_121109368_121109565_121110666
transcript_18456.known	chr11	-	2417	7	FSM	ENSMUSG00000039294.15	ENSMUST00000038709.14	2417	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	26.4790273403101	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCCTTTCTGTTTTCTGC	NA	False	NA	0	True	AATAAA	-22	NA	121120135	121113413	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_121115059_121115374_121115520_121116629_121116727_121117594_121117669_121118068_121118111_121119153_121119297_121119864
transcript_18457.nic	chr11	-	2408	7	NIC	ENSMUSG00000039294.15	novel	2417	7	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_6	17.7709188157381	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCCTTTCTGTTTTCTGC	NA	False	NA	0	True	AATAAA	-22	NA	121120146	121113413	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr11_-_121115059_121115374_121115520_121116629_121116727_121117594_121117669_121118068_121118111_121119153_121119297_121119884
transcript_18458.known	chr11	-	2239	7	FSM	ENSMUSG00000039294.15	ENSMUST00000106115.8	2239	7	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_6	22.8284666346404	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCCTTTCTGTTTTCTGC	NA	False	NA	0	True	AATAAA	-22	NA	121120131	121113413	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_121115059_121115374_121115520_121116629_121116727_121117594_121117669_121118068_121118111_121119153_121119297_121120038
transcript_18459.known	chr11	-	1308	9	FSM	ENSMUSG00000025169.7	ENSMUST00000026169.7	1308	9	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_7	19.9483708607996	382	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGATCTGGGCGCTGC	NA	False	NA	-7	True	AGTAAA	-41	NA	121095537	121068416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_121068765_121074236_121074361_121085905_121086060_121087562_121087620_121088256_121088322_121090591_121090635_121091736_121091813_121093716_121093935_121095314
transcript_18460.known	chr11	+	4395	11	FSM	ENSMUSG00000000056.8	ENSMUST00000103015.4	4395	11	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_4	11.0295058819514	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGTGTATGTGTGTCTA	NA	False	NA	NA	False	NA	NA	NA	121128078	121146682	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_121128178_121129244_121129344_121133326_121133471_121135419_121135553_121135761_121135897_121136163_121136283_121137751_121137882_121139954_121140019_121141118_121141257_121141585_121141744_121143506
transcript_18461.known	chr11	-	2321	10	FSM	ENSMUSG00000025173.14	ENSMUST00000026173.13	2321	10	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_4	31.7350139610984	448	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCAGAGCCATATGTAATG	NA	False	NA	1	True	AATAAA	-33	NA	121245271	121218049	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_121219291_121219618_121219741_121220151_121220254_121220972_121221059_121226209_121226401_121227801_121227897_121229382_121229471_121231939_121232042_121240057_121240133_121245052
transcript_18462.known	chr11	-	1861	6	FSM	ENSMUSG00000025170.14	ENSMUST00000106107.3	1861	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.4	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGTCGTGGTATCTCTTT	NA	False	NA	NA	False	AATAAA	-24	NA	121279077	121246950	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_121248135_121248685_121248909_121249600_121249679_121250385_121250447_121254329_121254391_121278823
transcript_18464.known	chr11	+	2520	6	FSM	ENSMUSG00000039253.8	ENSMUST00000038096.8	2520	6	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_4	7.30479294709987	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTAAGACTGGTATATTT	3857	False	NA	NA	False	AATAAA	-20	NA	121312226	121322114	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_121312430_121315751_121315904_121316380_121316473_121317446_121317530_121319870_121319994_121320247
transcript_18465.known	chr11	+	1047	6	FSM	ENSMUSG00000025175.13	ENSMUST00000026175.9	1047	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCTACTTTTGAGTCGG	NA	False	NA	NA	False	AATAAA	-21	NA	121325738	121341317	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_121325956_121328098_121328251_121330111_121330204_121330896_121330980_121339707_121339831_121340937
transcript_18466.known	chr11	+	3906	39	FSM	ENSMUSG00000039230.15	ENSMUST00000103013.10	3906	39	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_21	67.5521189983218	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAGCCTCTGCCTATCTC	NA	False	NA	33	True	ATTAAA	-15	NA	121342774	121507990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_+_121343055_121344456_121344508_121350226_121350325_121351234_121351337_121352079_121352227_121352577_121352634_121366364_121366498_121383383_121383430_121384584_121384718_121387820_121387964_121389861_121389923_121390861_121390937_121394518_121394614_121431677_121431835_121441049_121441108_121447781_121447812_121451500_121451587_121464621_121464703_121466111_121466186_121466951_121467070_121469540_121469602_121470973_121470997_121473578_121473611_121481169_121481233_121482004_121482082_121483456_121483539_121485085_121485205_121487274_121487367_121488077_121488219_121492782_121492867_121493813_121493973_121494059_121494199_121494440_121494563_121496088_121496167_121499397_121499488_121500165_121500254_121500806_121500917_121502489_121502575_121507753
transcript_18469.known	chr11	-	2864	13	FSM	ENSMUSG00000046605.15	ENSMUST00000067399.14	2864	13	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_9	15.1867998238236	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTGACTATAACATTCATA	NA	False	NA	2	True	AATAAA	-26	NA	121563979	121507022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr11_-_121508679_121510460_121510555_121514257_121514333_121514747_121514817_121514917_121515054_121520698_121520824_121521597_121521694_121530577_121530674_121535352_121535419_121542434_121542500_121561695_121561796_121561882_121562000_121563810
transcript_18478.nnic	chr11	-	994	4	NNC	ENSMUSG00000046605.15	novel	2864	13	NA	NA	-5	-27019	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	36.4173340899938	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTGTCTCCACTTTA	NA	False	NA	NA	False	AATAAA	-21	NA	121563984	121545112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr11_-_121545716_121561695_121561796_121561882_121562000_121563810
transcript_1848.known	chr1	-	1132	7	FSM	ENSMUSG00000042807.16	ENSMUST00000097741.3	1132	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTTGTTCCAATGATTCA	NA	False	NA	NA	False	AATAAA	-18	NA	54234193	53969971	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_53970269_53972277_53972448_53976216_53976293_53981864_53981960_53989972_53990081_54079359_54079687_54234134
transcript_18487.known	chr12	+	1075	7	FSM	ENSMUSG00000079179.10	ENSMUST00000179643.8	1075	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_6	82.4479633870156	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAAGCCTGTTAGGCCA	NA	False	NA	NA	False	AATAAA	-20	NA	3285790	3300376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_3285930_3287284_3287413_3287590_3287661_3288028_3288113_3291521_3291579_3297351_3297439_3299866
transcript_18496.known	chr12	-	3513	6	FSM	ENSMUSG00000020671.10	ENSMUST00000021001.10	3513	6	0	0	0	0	multi-exon	FALSE	canonical	3	1286	junction_2	62.4422933595492	207	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGGTTTGGTTTTCAT	NA	False	NA	-2	True	TATAAA	-19	NA	3359969	3297427	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_3299871_3302611_3302714_3303268_3303359_3306866_3307006_3314688_3314750_3359291
transcript_1850.known	chr1	+	1204	7	FSM	ENSMUSG00000025983.12	ENSMUST00000161988.2	1204	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	2.3392781412697	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAATTGTATCTTAATTT	NA	False	NA	NA	False	GATAAA	-8	NA	54289841	54318120	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_54290045_54299082_54299247_54302602_54302824_54302932_54303112_54311636_54311706_54316812_54316930_54317869
transcript_18503.nnic	chr12	+	915	4	NNC	ENSMUSG00000079179.10	novel	4006	4	NA	NA	-107	1	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_1	68.3569065030496	80	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTCTCAGGACAAATTTG	NA	False	NA	11	True	AATAAA	-20	NA	3285396	3288274	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_3285930_3287346_3287413_3287590_3287661_3288028
transcript_18508.known	chr12	+	4006	4	FSM	ENSMUSG00000079179.10	ENSMUST00000178074.8	4006	4	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_1	34.8934887272046	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGAAAGCTCTTACTTGAT	NA	False	NA	NA	False	AATAAA	-20	NA	3285503	3291410	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_3285930_3287284_3287413_3287590_3287661_3288028
transcript_1851.nnic	chr1	-	4299	19	NNC	ENSMUSG00000041303.8	novel	4582	18	NA	NA	-62	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	45.5715419104814	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTCACCTTTTAAACTTT	6638	False	NA	-6	True	AATAAA	-19	NA	54478192	54435162	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_54435786_54436130_54437162_54438287_54438441_54442669_54442795_54444138_54444330_54444995_54445234_54455042_54455179_54455880_54455983_54456817_54457021_54458541_54458714_54459554_54459659_54462659_54462733_54463167_54463316_54466558_54466725_54467920_54468113_54469657_54469782_54473212_54473398_54476990_54477103_54477971
transcript_18511.known	chr12	+	812	4	FSM	ENSMUSG00000079179.10	ENSMUST00000178331.8	812	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_3	69.5621225156974	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTCTCTCAGGACAAATTT	NA	False	NA	10	True	AATAAA	-19	NA	3285525	3288273	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_3285930_3287284_3287413_3287590_3287661_3288063
transcript_1852.known	chr1	-	4582	18	FSM	ENSMUSG00000041303.8	ENSMUST00000041638.8	4582	18	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_11	22.8358062796764	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTCACCTTTTAAACTTT	6700	False	NA	-6	True	AATAAA	-19	NA	54478130	54435162	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_54437162_54438287_54438441_54442669_54442795_54444138_54444330_54444995_54445234_54455042_54455179_54455880_54455983_54456817_54457021_54458541_54458714_54459554_54459659_54462659_54462733_54463167_54463316_54466558_54466725_54467920_54468113_54469657_54469782_54473212_54473398_54476990_54477103_54477971
transcript_18523.known	chr12	+	2872	7	FSM	ENSMUSG00000079179.10	ENSMUST00000177896.8	2872	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_6	77.8117386174263	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAAGCCTGTTAGGCCAT	NA	False	NA	NA	False	AATAAA	-21	NA	3285525	3300377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_3287413_3287590_3287661_3288028_3288113_3288833_3289010_3291521_3291579_3297351_3297439_3299866
transcript_18524.known	chr12	+	1483	12	FSM	ENSMUSG00000037486.19	ENSMUST00000144247.9	1483	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	30.173328488354	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAACCCCAGCTGAGC	NA	False	NA	NA	False	NA	NA	NA	3476883	3546284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_3477213_3492473_3492557_3495451_3495455_3501661_3501771_3507061_3507210_3519477_3519594_3524489_3524614_3526025_3526170_3534444_3534609_3539636_3539734_3543733_3543840_3546224
transcript_18526.known	chr12	+	6791	8	FSM	ENSMUSG00000020668.11	ENSMUST00000020999.7	6791	8	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	14.4066311262614	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGCTTGCCTGCTTCTCTC	NA	False	NA	NA	False	AATAAA	-21	NA	3415189	3456494	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_3417532_3437551_3437654_3438134_3438258_3439622_3439742_3440437_3440555_3451682_3451792_3452433_3452607_3452788
transcript_18539.known	chr12	-	586	4	FSM	ENSMUSG00000071456.7	ENSMUST00000179637.3	586	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	28.7556757682529	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTGTCTTGAACGTGCT	NA	False	NA	NA	False	NA	NA	NA	3476714	3456705	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_3456712_3457643_3457925_3473099_3473185_3476500
transcript_18541.known	chr12	-	1923	3	FSM	ENSMUSG00000071456.7	ENSMUST00000095903.7	1923	3	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	5.5	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTGAATTGTTAAGTGCT	NA	False	NA	NA	False	AATAAA	-11	NA	3476740	3455309	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_3456712_3457643_3457925_3476500
transcript_18543.known	chr12	-	3569	3	FSM	ENSMUSG00000071456.7	ENSMUST00000168012.3	3569	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	29.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGGCCTGGGTTTGTTTCT	NA	False	NA	NA	False	AGTAAA	-19	NA	3477011	3453877	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_3456712_3457700_3457925_3476500
transcript_18546.nnic	chr12	-	450	2	NNC	ENSMUSG00000071456.7	novel	3569	3	NA	NA	-15	-18826	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0	41	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTAGAAATCGCATTGTGT	NA	False	NA	NA	False	NA	NA	NA	3476762	3476049	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_3476238_3476500
transcript_18547.known	chr12	-	948	2	FSM	ENSMUSG00000071456.7	ENSMUST00000180149.2	948	2	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTCTGTCCTCTGATCTC	NA	False	NA	NA	False	NA	NA	NA	3476747	3457223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_3457925_3476500
transcript_18548.known	chr12	+	2820	20	FSM	ENSMUSG00000071454.14	ENSMUST00000173199.8	2820	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	121.930910004004	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATGTGATCGCCAAGTC	NA	False	NA	NA	False	NA	NA	NA	3622380	3831796	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_3622648_3639170_3639239_3641905_3641987_3646648_3646863_3667605_3667692_3682809_3682965_3693916_3694023_3698222_3698390_3736737_3736863_3768411_3768490_3782617_3782708_3784938_3785027_3798424_3798511_3799469_3799584_3801810_3801908_3804095_3804117_3822586_3822747_3823550_3823641_3829618_3829655_3831105
transcript_18549.known	chr12	+	2390	20	FSM	ENSMUSG00000071454.14	ENSMUST00000164607.9	2390	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	90.3998198218487	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGTGTGTTCCTTCCG	NA	False	NA	27	True	AAAAAG	-7	NA	3622432	3831398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_3622648_3639170_3639239_3641905_3641987_3646648_3646863_3667605_3667692_3682809_3682965_3693916_3694023_3698222_3698390_3736737_3736863_3768411_3768490_3782617_3782708_3784938_3785027_3798424_3798511_3799469_3799584_3801810_3801908_3822586_3822747_3823550_3823641_3824569_3824611_3829618_3829655_3831105
transcript_18552.known	chr12	+	3689	7	FSM	ENSMUSG00000071454.14	ENSMUST00000174479.8	3689	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	135.946067737663	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGACACTTGTTTATATG	NA	False	NA	NA	False	AATAAA	-16	NA	3622433	3696787	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_3622648_3639170_3639239_3641905_3641987_3646648_3646863_3667605_3667692_3682809_3682965_3693916
transcript_18557.known	chr12	+	414	3	FSM	ENSMUSG00000071454.14	ENSMUST00000174414.2	414	3	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_1	84.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGTGTGTGTTCCTTCC	NA	False	NA	26	True	AAAAAG	-6	NA	3824524	3831397	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_3824611_3829618_3829655_3831105
transcript_18558.known	chr12	+	400	2	FSM	ENSMUSG00000071454.14	ENSMUST00000174293.2	400	2	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGTGTGTTCCTTCCG	2918	False	NA	27	True	AAAAAG	-7	NA	3829547	3831398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_3829655_3831105
transcript_18559.known	chr12	+	2328	18	FSM	ENSMUSG00000020661.16	ENSMUST00000172689.8	2328	18	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	19.4274446476198	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACGGAGAAAAGTTCAGCA	NA	False	NA	NA	False	NA	NA	NA	3941727	3957842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_3941861_3945542_3945759_3945989_3946149_3946577_3946686_3946885_3947043_3947297_3947448_3947564_3947610_3949192_3949273_3949586_3949700_3949863_3950048_3950276_3950362_3951548_3951695_3952380_3952472_3952665_3952815_3954139_3954226_3955592_3955663_3956764_3956884_3957605
transcript_18565.known	chr12	+	4698	7	FSM	ENSMUSG00000020657.17	ENSMUST00000020986.15	4698	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_5	5.84284938098603	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGTCTGCTGGCTGCAT	NA	False	NA	8	True	AGTAAA	-14	NA	4132582	4160606	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_4132874_4135953_4136037_4139133_4139204_4146212_4146378_4147223_4147347_4153053_4153215_4156801
transcript_18568.nic	chr12	+	881	3	ISM	ENSMUSG00000020657.17	ENSMUST00000219923.2	2934	9	-48	19566	-2	-6734	5prime_fragment	FALSE	canonical	3	31	junction_1	2	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGAAAAGAAAGACATTT	NA	False	NA	NA	False	NA	NA	NA	4132580	4139638	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_4132874_4135953_4136037_4139133
transcript_18571.known	chr12	-	4348	7	FSM	ENSMUSG00000020652.18	ENSMUST00000140975.8	4348	7	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_6	17.0953209972788	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCCTTTGCTTTTTAAGC	NA	False	NA	NA	False	ACTAAA	-23	NA	4284294	4261666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_4264631_4265258_4265431_4266518_4266779_4267207_4267323_4281515_4281683_4283530_4283658_4283751
transcript_18572.nnic	chr12	-	2470	7	NNC	ENSMUSG00000020652.18	novel	4348	7	NA	NA	33	0	at_least_one_novel_splicesite	FALSE	canonical	3	55	junction_6	14.9666295470958	103	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACCTGCAGATTCTTTGT	NA	False	NA	-9	True	AATAAA	-19	NA	4284261	4263481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_4264631_4265258_4265431_4266518_4266779_4267207_4267323_4281515_4281683_4283530_4283658_4283781
transcript_18575.known	chr12	-	1683	5	FSM	ENSMUSG00000020652.18	ENSMUST00000126017.2	1683	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_4	19.0328663106743	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCTGAGCAGTTCCACCT	NA	False	NA	NA	False	AGTAAA	-20	NA	4283938	4265691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_4266779_4267207_4267323_4281515_4281683_4283530_4283658_4283751
transcript_18576.known	chr12	-	781	5	FSM	ENSMUSG00000020647.11	ENSMUST00000219373.2	781	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	40.5855577761351	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAAGAAAAAAAGTT	NA	False	NA	NA	False	NA	NA	NA	4313578	4299440	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_4299748_4299835_4299891_4303656_4303747_4309211_4309396_4313433
transcript_18578.known	chr12	-	457	3	FSM	ENSMUSG00000112819.2	ENSMUST00000217932.2	457	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	2.5	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAACTGTCTTGGCTACA	NA	False	NA	NA	False	NA	NA	NA	4603785	4602545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_4602746_4603013_4603176_4603690
transcript_1858.nic	chr1	-	704	3	ISM	ENSMUSG00000073678.5	ENSMUST00000185817.2	1408	12	-49	23581	-49	6738	5prime_fragment	FALSE	canonical	3	35	junction_1	3	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAAAAACCCTCAAATCAT	NA	False	NA	NA	False	TATAAA	-21	NA	54596892	54587023	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_54587274_54590135_54590290_54596592
transcript_18580.known	chr12	-	3004	8	FSM	ENSMUSG00000079177.5	ENSMUST00000111154.4	3004	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.30930734141595	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTCAGTGCACAAGTGGAT	NA	False	NA	NA	False	AATAAA	-18	NA	4788419	4763669	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_4765708_4768576_4768719_4781139_4781306_4781424_4781507_4782740_4782930_4784967_4785037_4787678_4787786_4788208
transcript_18584.nnic	chr12	-	1532	11	NNC	ENSMUSG00000050545.11	novel	2851	7	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_3	8.77724330299668	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAGTTCAGTGTCTGTGAT	NA	False	NA	-4	True	AATAAA	-10	NA	4819246	4789891	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_4790044_4791061_4791208_4795651_4795757_4797154_4797224_4798020_4798178_4798263_4798352_4812326_4812408_4812999_4813192_4814078_4814148_4818389_4818522_4818905
transcript_18588.nic	chr12	-	1319	9	NIC	ENSMUSG00000050545.11	novel	2851	7	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	9.17792868789031	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTCAGTGTCTGTGATGA	NA	False	NA	-2	True	AATAAA	-12	NA	4819246	4789889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_-_4790044_4795651_4795757_4798020_4798178_4798263_4798352_4812326_4812408_4812999_4813192_4814078_4814148_4818389_4818522_4818905
transcript_1859.nic	chr1	-	626	3	ISM	ENSMUSG00000073678.5	ENSMUST00000185817.2	1408	12	-49	23659	-49	6660	5prime_fragment	FALSE	canonical	3	35	junction_1	3	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGTGGGAGATAAGTGTT	NA	False	NA	NA	False	ATTAAA	-18	NA	54596892	54587101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_54587274_54590135_54590290_54596592
transcript_18592.nnic	chr12	-	1262	7	NNC	ENSMUSG00000050545.11	novel	2851	7	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	8.55862138431185	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTCCTCCGTATGTGATA	NA	False	NA	NA	False	AATAAA	-16	NA	4819232	4797911	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_4798178_4798263_4798352_4812326_4812408_4812999_4813192_4814078_4814148_4818389_4818522_4818798
transcript_18593.known	chr12	-	2851	7	FSM	ENSMUSG00000050545.11	ENSMUST00000053458.7	2851	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	2.69258240356725	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAATAAAATAAAAACAT	NA	False	NA	NA	False	NA	NA	NA	4819232	4796215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_4798178_4798263_4798352_4812326_4812408_4812999_4813192_4814078_4814148_4818389_4818522_4818905
transcript_18596.nnic	chr12	-	1484	7	NNC	ENSMUSG00000050545.11	novel	239	2	NA	NA	-14	-13225	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	9.5524865872714	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTACTGGTATTTTTTACAA	NA	False	NA	NA	False	AATAAA	-29	NA	4819246	4811131	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_4811616_4811802_4811988_4812326_4812408_4812999_4813192_4814078_4814148_4818389_4818522_4818905
transcript_18598.known	chr12	-	1281	6	FSM	ENSMUSG00000050545.11	ENSMUST00000218575.2	1281	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	2.93938769133981	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCGTATGTGATATTTTT	NA	False	NA	NA	False	AATAAA	-21	NA	4819267	4797906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_4798352_4812326_4812408_4812999_4813192_4814078_4814148_4818389_4818522_4818905
transcript_1860.known	chr1	-	10583	27	FSM	ENSMUSG00000073678.5	ENSMUST00000097739.5	10583	27	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_18	5.36548800562088	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTTTACTGGTTTTCAT	NA	False	NA	3	True	AATAAA	-29	NA	54596841	54512152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_54520004_54521010_54521116_54525628_54525817_54529379_54529431_54531187_54531324_54532367_54532566_54533959_54534051_54536692_54536787_54549186_54549226_54550552_54550662_54551059_54551127_54551755_54551808_54551930_54552005_54553995_54554072_54560450_54560529_54563474_54563527_54564526_54564574_54567670_54567755_54569275_54569332_54570012_54570119_54571180_54571248_54572577_54572631_54575113_54575272_54582196_54582369_54587097_54587274_54590135_54590290_54596592
transcript_18611.known	chr12	+	1180	4	FSM	ENSMUSG00000037361.9	ENSMUST00000046207.9	1180	4	0	0	0	0	multi-exon	FALSE	canonical	3	1039	junction_3	63.8609600790829	8769	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTTTTCTCTTGTAA	NA	False	NA	NA	False	NA	NA	NA	4867543	4877659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_4867820_4870593_4870713_4876757_4876897_4877013
transcript_18612.known	chr12	-	976	4	FSM	ENSMUSG00000020635.9	ENSMUST00000020964.7	976	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	6.34209919681348	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTGTTGTGGGAGGTTCTT	NA	False	NA	0	True	AATAAA	-29	NA	4891591	4883173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_4883796_4884738_4884852_4888168_4888217_4891398
transcript_18613.known	chr12	-	246	4	FSM	ENSMUSG00000020635.9	ENSMUST00000219880.2	246	4	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	23.2999761564017	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTGGGGCAGAGGGCGAA	NA	False	NA	NA	False	NA	NA	NA	4891435	4883792	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_4883841_4884738_4884852_4888168_4888217_4891398
transcript_18614.known	chr12	+	2202	4	FSM	ENSMUSG00000051721.7	ENSMUST00000220215.2	2202	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	5.90668171555645	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGGATTTATTCATT	NA	False	NA	NA	False	NA	NA	NA	4893302	4906967	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_4893452_4900126_4901943_4905277_4905393_4906845
transcript_18616.known	chr12	+	605	2	FSM	ENSMUSG00000051721.7	ENSMUST00000219069.2	605	2	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	0	831	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACATGGTGGTGTGTGCC	NA	False	NA	NA	False	AATAAA	-15	NA	4893327	4899343	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_4893452_4898862
transcript_18617.known	chr12	-	2146	7	FSM	ENSMUSG00000020634.13	ENSMUST00000142867.8	2146	7	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_6	462.20356866741	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAACAAAAAGCAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	4957264	4929348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_4930772_4933822_4933982_4935720_4935859_4941314_4941422_4944537_4944680_4952219_4952273_4957140
transcript_18622.known	chr12	+	2737	7	FSM	ENSMUSG00000037669.16	ENSMUST00000037383.13	2737	7	0	0	0	0	multi-exon	TRUE	canonical	3	35	junction_1	76.8839312788367	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTGTGTGTGGTCTGATC	NA	False	NA	18	True	AATAAA	-18	NA	8258106	8335759	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_8258193_8270599_8270756_8277219_8277364_8288442_8288616_8318363_8318599_8325807_8325891_8333899
transcript_18624.known	chr12	+	1159	6	FSM	ENSMUSG00000037669.16	ENSMUST00000218086.2	1159	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	78.8958807543208	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAAGAACTAACATTGTG	NA	False	NA	NA	False	AATAAA	-34	NA	8258144	8326210	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_8258193_8270599_8270756_8277219_8277364_8288442_8288616_8318363_8318599_8325807
transcript_1863.known	chr1	-	6195	25	FSM	ENSMUSG00000025982.14	ENSMUST00000027127.14	6195	25	0	0	0	0	multi-exon	TRUE	canonical	2	1032	junction_2	157.733865172392	1125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATAGTATACCAGTTCTT	NA	False	NA	-9	True	AATAAA	-17	NA	55066640	55024327	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_55026652_55027097_55027315_55029461_55029735_55033488_55033621_55034524_55034646_55035975_55036088_55036170_55036354_55037196_55037419_55038785_55038912_55039173_55039321_55039400_55039547_55039802_55040074_55040170_55040258_55040541_55040722_55042262_55042365_55042451_55042650_55044960_55045083_55045329_55045543_55046638_55046877_55051260_55051432_55053641_55053722_55055534_55055650_55055937_55056043_55058392_55058560_55066497
transcript_18630.known	chr12	+	683	5	FSM	ENSMUSG00000037669.16	ENSMUST00000217999.2	683	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	94.3699501960237	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGAGTTTCTCCCTAAGG	NA	False	NA	NA	False	AAGAAA	-35	NA	8258149	8325871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_8258205_8270599_8270756_8288442_8288616_8318363_8318599_8325807
transcript_18631.known	chr12	+	1587	5	FSM	ENSMUSG00000037669.16	ENSMUST00000218305.2	1587	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	100.260909630823	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTGCCTAAACTTTATTG	NA	False	NA	NA	False	AGTAAA	-17	NA	8258135	8334943	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_8258205_8270599_8270756_8318363_8318599_8325807_8325891_8333899
transcript_18633.known	chr12	+	467	4	FSM	ENSMUSG00000037669.16	ENSMUST00000220345.2	467	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	79.5501239610739	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCCAGATAGTGAAGCGAGA	NA	False	NA	NA	False	AATAAA	-34	NA	8258148	8325839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_8258193_8270599_8270756_8318363_8318599_8325807
transcript_18634.known	chr12	+	3496	3	FSM	ENSMUSG00000037669.16	ENSMUST00000217763.2	3496	3	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_1	5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGGAAAAAAGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	8258149	8280504	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_8258205_8270599_8270756_8277219
transcript_18635.known	chr12	+	2626	6	FSM	ENSMUSG00000037669.16	ENSMUST00000169104.3	2626	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	96.0791340510519	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTGTGTGTGGTCTGATC	NA	False	NA	18	True	AATAAA	-18	NA	8258146	8335759	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_8258205_8270599_8270756_8277219_8277364_8288442_8288616_8318363_8318599_8333899
transcript_18636.known	chr12	+	2959	7	FSM	ENSMUSG00000020605.10	ENSMUST00000020927.10	2959	7	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	12.8765506078125	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCAGTGTTGTTCTTTTCC	NA	False	NA	NA	False	AGTAAA	-24	NA	8363431	8393824	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_8363498_8367784_8367951_8371518_8371727_8373869_8374102_8386237_8386396_8387632_8387769_8391831
transcript_1864.known	chr1	-	3403	10	FSM	ENSMUSG00000025982.14	ENSMUST00000187500.7	3403	10	0	0	0	0	multi-exon	FALSE	canonical	3	1240	junction_5	107.350930234545	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGTTGCTTTTAAAAATT	NA	False	NA	NA	False	AAAAAG	-13	NA	55066623	55042309	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_55042365_55042451_55042650_55044960_55045083_55045329_55045543_55046638_55046877_55051260_55051432_55053641_55055650_55055937_55056043_55058392_55058560_55066497
transcript_18642.nic	chr12	+	1421	3	ISM	ENSMUSG00000020605.10	ENSMUST00000020927.10	2959	7	-25	21142	-25	-1316	5prime_fragment	FALSE	canonical	3	118	junction_1	13.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAGCTGAGTGATTTTTAT	NA	False	NA	NA	False	NA	NA	NA	8363406	8372682	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_8363498_8367784_8367951_8371518
transcript_18643.nnic	chr12	+	481	3	NNC	ENSMUSG00000112276.2	novel	1194	3	NA	NA	8352	-41372	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_1	0	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACTTTAATTGAGCATTG	NA	False	NA	NA	False	NA	NA	NA	8569552	8571290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_8569746_8570846_8570989_8571144
transcript_18645.known	chr12	+	6311	21	FSM	ENSMUSG00000020594.15	ENSMUST00000111122.9	6311	21	0	0	0	0	multi-exon	TRUE	canonical	3	78	junction_1	34.6128227684481	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCCTCTATATCTCTGTC	NA	False	NA	18	True	AATAAA	-30	NA	8724223	8802561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_8724481_8748090_8748160_8755932_8756042_8759321_8759510_8760158_8760326_8763359_8763631_8763843_8763938_8768987_8769114_8771664_8771808_8774046_8774180_8778633_8778778_8778855_8779150_8783272_8783510_8793760_8794029_8794336_8794467_8794614_8794744_8797156_8797295_8798110_8798237_8798397_8798520_8798760_8798954_8799588
transcript_18647.known	chr12	+	3295	20	FSM	ENSMUSG00000020594.15	ENSMUST00000169089.8	3295	20	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_12	35.415538790362	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTCACATATTTTGTAAA	NA	False	NA	NA	False	AAAAAG	-9	NA	8724469	8800028	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_8724481_8748090_8748160_8755932_8756042_8759321_8759510_8760158_8760326_8763359_8763631_8763843_8763938_8768987_8769114_8771664_8771808_8774046_8774180_8778633_8778778_8778855_8779150_8793760_8794029_8794336_8794467_8794614_8794744_8797156_8797295_8798110_8798237_8798397_8798520_8798760_8798954_8799588
transcript_18649.known	chr12	+	3157	5	FSM	ENSMUSG00000020592.15	ENSMUST00000020911.14	3157	5	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_4	19.0574788468989	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGGTGTACTTGTGCAG	NA	False	NA	NA	False	AATAAA	-28	NA	8821322	8843715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_8821702_8839406_8839489_8840384_8840867_8841290_8841427_8841637
transcript_1865.known	chr1	+	834	4	FSM	ENSMUSG00000025981.14	ENSMUST00000087617.11	834	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	69.4694177318336	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCACTTGTACATAGAATT	3559	False	NA	NA	False	NA	NA	NA	55091928	55111112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_55092150_55103339_55103533_55106655_55106758_55110794
transcript_18651.nnic	chr12	+	286	2	NNC	ENSMUSG00000020592.15	novel	2311	6	NA	NA	-33	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTATGAACTCTACTGCT	NA	False	NA	7	True	AATAAA	-16	NA	8821289	8843064	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_8821459_8842947
transcript_18654.known	chr12	+	1773	7	FSM	ENSMUSG00000020585.5	ENSMUST00000020909.4	1773	7	0	0	0	0	multi-exon	FALSE	canonical	3	924	junction_4	59.5158708991886	6908	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCCTCATGTTTATGCTA	NA	False	NA	38	True	AATAAA	-29	NA	8971663	8988742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_8972295_8981627_8981749_8984695_8984773_8984865_8984989_8985986_8986083_8986696_8986796_8988116
transcript_18655.known	chr12	+	3014	8	FSM	ENSMUSG00000020583.5	ENSMUST00000020899.5	3014	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	6.68534797531291	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCTTTTAAAAACTTTATT	NA	False	NA	NA	False	NA	NA	NA	8997928	9022028	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_8998252_9001997_9002565_9005366_9005493_9008789_9008916_9011117_9011244_9013472_9013599_9017628_9017740_9020519
transcript_18656.known	chr12	+	4312	27	FSM	ENSMUSG00000066643.13	ENSMUST00000111113.3	4312	27	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_5	11.1856972283898	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTGAGTAATGCTGTAGT	NA	False	NA	7	True	AATAAA	-14	NA	9024046	9078846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_9024180_9024933_9025052_9027362_9027435_9028597_9028691_9031031_9031161_9032760_9032895_9035628_9035795_9035966_9036113_9037277_9037404_9039904_9040091_9046068_9046130_9053996_9054142_9055762_9055833_9056719_9056774_9058001_9058112_9058478_9058690_9062660_9062742_9065969_9066107_9066436_9066641_9068085_9068233_9069877_9070011_9071729_9071841_9072718_9072884_9074193_9074335_9074885_9075043_9077482_9077724_9078005
transcript_18660.known	chr12	+	1000	3	FSM	ENSMUSG00000066637.3	ENSMUST00000085741.2	1000	3	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_2	13	1461	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAAATAAAACAAAAGA	NA	False	NA	NA	False	NA	NA	NA	9079996	9086394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_9080197_9084921_9085089_9085761
transcript_18662.known	chr12	+	1480	2	FSM	ENSMUSG00000020621.7	ENSMUST00000020947.7	1480	2	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	0	187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTGTGCATTTCTTTAA	NA	False	NA	11	True	AATAAA	-17	NA	10440771	10445562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_10441227_10444537
transcript_18665.nnic	chr12	-	1669	2	Genic_Genomic	ENSMUSG00000066632.4	novel	1255	1	NA	NA	-73	432	multi-exon	FALSE	canonical	2	86	junction_1	0	868	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTCCATCCATAAACTGAA	NA	False	NA	NA	False	AATAAA	-29	NA	10950313	10948553	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr12_-_10949128_10949218
transcript_18667.known	chr12	-	2933	3	FSM	ENSMUSG00000043673.12	ENSMUST00000055673.2	2933	3	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	7	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAAGTGGTATACCTCAT	4007	False	NA	NA	False	ATTAAA	-32	NA	11200374	11140202	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_11142757_11169759_11169950_11200185
transcript_18668.known	chr12	-	5268	14	FSM	ENSMUSG00000051235.11	ENSMUST00000166117.4	5268	14	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	6.04323672043149	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTTAATCCTTACCTCA	NA	False	NA	4	True	NA	NA	NA	11315767	11288920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_11292578_11293190_11293335_11296289_11296352_11298215_11298347_11299130_11299212_11300052_11300090_11300714_11300866_11302004_11302094_11304351_11304426_11305157_11305269_11306838_11307016_11310882_11311070_11312407_11312595_11315587
transcript_1867.known	chr1	+	1733	5	FSM	ENSMUSG00000025981.14	ENSMUST00000027125.7	1733	5	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_4	22.7486263321547	613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGGTTATTTAAATCTTT	3559	False	NA	22	True	AATAAA	-28	NA	55091928	55111861	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_55092150_55100433_55100584_55103339_55103533_55106655_55106758_55110794
transcript_18670.nic	chr12	-	1765	12	ISM	ENSMUSG00000051235.11	ENSMUST00000166117.4	5268	14	-116	7187	-81	1634	5prime_fragment	FALSE	canonical	3	39	junction_9	5.8124972229621	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTTTTACTTTTAATATC	NA	False	NA	NA	False	AATAAA	-16	NA	11315883	11296107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_-_11296352_11298215_11298347_11299130_11299212_11300052_11300090_11300714_11300866_11302004_11302094_11304351_11304426_11305157_11305269_11306838_11307016_11310882_11311070_11312407_11312595_11315587
transcript_18673.nic	chr12	-	1816	11	ISM	ENSMUSG00000051235.11	ENSMUST00000166117.4	5268	14	-116	9000	-81	-179	5prime_fragment	FALSE	canonical	3	39	junction_8	5.88302643203309	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAACTATTAGTAAAAA	NA	False	NA	NA	False	NA	NA	NA	11315883	11297920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_-_11298347_11299130_11299212_11300052_11300090_11300714_11300866_11302004_11302094_11304351_11304426_11305157_11305269_11306838_11307016_11310882_11311070_11312407_11312595_11315587
transcript_18682.known	chr12	+	5603	27	FSM	ENSMUSG00000020608.8	ENSMUST00000020931.6	5603	27	0	0	0	0	multi-exon	TRUE	canonical	3	574	junction_19	50.8148542090207	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGGTCATGCTTTTGTGA	4317	False	NA	NA	False	AATAAA	-23	NA	11315886	11369786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_11316290_11321729_11321873_11323994_11324113_11326260_11326367_11329605_11329743_11330341_11330404_11332360_11332442_11333071_11333174_11335098_11335219_11335311_11335411_11339128_11339276_11339637_11339727_11339892_11340058_11340713_11340893_11341526_11341732_11344485_11344601_11344923_11345085_11347150_11347287_11348262_11348344_11349259_11349431_11350571_11350710_11351522_11351669_11356078_11356205_11359199_11359306_11364607_11364761_11366619_11366718_11367770
transcript_18687.known	chr12	+	3373	10	FSM	ENSMUSG00000020608.8	ENSMUST00000218866.2	3373	10	0	0	0	0	multi-exon	FALSE	canonical	3	624	junction_2	43.5943704599856	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTATGTCATTGTGGGT	4560	False	NA	NA	False	TATAAA	-20	NA	11316129	11337655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_11316290_11321729_11321873_11323994_11324113_11326260_11326367_11329605_11329743_11330341_11330404_11332360_11332442_11333071_11333174_11335098_11335219_11335311
transcript_18695.nic	chr12	+	814	7	ISM	ENSMUSG00000020608.8	ENSMUST00000218022.2	5272	26	-19	36639	-19	2738	5prime_fragment	FALSE	canonical	3	71	junction_3	228.569768099127	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAACAAAGGAACAAATAAAT	4517	False	NA	NA	False	AAGAAA	-1	NA	11316086	11333141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_11316290_11321729_11321873_11323994_11324113_11329605_11329743_11330341_11330404_11332360_11332442_11333071
transcript_18697.nic	chr12	+	696	6	NIC	ENSMUSG00000020608.8	novel	3373	10	NA	NA	-19	2738	combination_of_known_junctions	FALSE	canonical	3	100	junction_2	237.697623042385	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAACAAAGGAACAAATAAAT	4517	False	NA	NA	False	AAGAAA	-1	NA	11316086	11333141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_11316290_11321729_11321873_11329605_11329743_11330341_11330404_11332360_11332442_11333071
transcript_18700.known	chr12	+	460	4	FSM	ENSMUSG00000020608.8	ENSMUST00000219776.2	460	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	352.375115781779	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGTGAAAAAGGTTTGT	4632	False	NA	NA	False	NA	NA	NA	11316201	11329728	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_11316290_11321729_11321873_11326260_11326367_11329605
transcript_18701.known	chr12	+	446	2	FSM	ENSMUSG00000020608.8	ENSMUST00000219041.2	446	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGGGTACGAGATACTGTT	4561	False	NA	NA	False	NA	NA	NA	11316130	11320796	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_11316290_11320509
transcript_18702.known	chr12	+	462	4	FSM	ENSMUSG00000020608.8	ENSMUST00000217906.2	462	4	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_2	295.334085777823	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATTGCTAAATTTGTTTT	4600	False	NA	NA	False	NA	NA	NA	11316169	11330403	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_11316290_11321729_11321873_11329605_11329743_11330341
transcript_18703.known	chr12	-	1903	4	FSM	ENSMUSG00000054459.9	ENSMUST00000072299.7	1903	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGAGTCATGTTCCATAAAAC	NA	False	NA	5	True	AATAAA	-32	NA	11486614	11375242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_11376506_11382001_11382218_11436815_11436983_11486357
transcript_18706.known	chr12	+	614	1	FSM	ENSMUSG00000078377.6	ENSMUST00000105169.6	614	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10350	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACGTGATATTTGTAAAAT	NA	False	NA	NA	False	NA	NA	NA	12073045	12073659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_12073000_12073700
transcript_18707.known	chr12	+	9452	13	FSM	ENSMUSG00000020589.18	ENSMUST00000069066.14	9452	13	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	32.1829621936135	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGACTTGGCTTCGTTC	NA	False	NA	NA	False	NA	NA	NA	12312139	12430966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_12312240_12326343_12326417_12354181_12354324_12390679_12390760_12408045_12408168_12409213_12409320_12411435_12411573_12412015_12412094_12412252_12412370_12412461_12412542_12414720_12414848_12419894_12419966_12422747
transcript_18709.known	chr12	+	1771	12	FSM	ENSMUSG00000020589.18	ENSMUST00000069005.10	1771	12	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	14.2718586881045	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGGTTTGTGTCCCTT	NA	False	NA	NA	False	NA	NA	NA	12312177	12423396	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_12312240_12354181_12354324_12390679_12390760_12408045_12408168_12409213_12409320_12411435_12411573_12412015_12412094_12412252_12412370_12412461_12412542_12414720_12414848_12419894_12419966_12422747
transcript_18716.known	chr12	+	1466	2	FSM	ENSMUSG00000091430.2	ENSMUST00000171380.2	1466	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	9933	False	NA	NA	False	NA	NA	NA	12837985	12844286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_12838086_12842920
transcript_18721.known	chr12	+	315	1	FSM	ENSMUSG00000066629.3	ENSMUST00000085720.3	315	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	54863	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGAACCCTCCCCCAATA	NA	False	NA	NA	False	NA	NA	NA	12962022	12962337	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_12962000_12962300
transcript_18722.known	chr12	-	2674	3	FSM	ENSMUSG00000037169.16	ENSMUST00000043396.15	2674	3	0	0	0	0	multi-exon	FALSE	canonical	3	794	junction_2	66.5	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGATGTTTTCCTTCCTAG	NA	False	NA	-18	True	AATAAA	-20	NA	12991915	12986093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_12987612_12989610_12990488_12991636
transcript_18723.known	chr12	-	2522	2	FSM	ENSMUSG00000037169.16	ENSMUST00000130990.2	2522	2	0	0	0	0	multi-exon	FALSE	canonical	3	927	junction_1	0	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCGATGTTTTCCTTCC	NA	False	NA	-21	True	AATAAA	-17	NA	12990617	12986096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_12987612_12989610
transcript_18724.known	chr12	-	4842	26	FSM	ENSMUSG00000037149.11	ENSMUST00000071103.10	4842	26	0	0	0	0	multi-exon	FALSE	canonical	3	1685	junction_15	174.121171601847	751	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGCTGTGTGTTTATAGA	NA	False	NA	NA	False	ATTAAA	-22	NA	13299214	13266973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273720_13273793_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
transcript_18753.known	chr12	+	7234	52	FSM	ENSMUSG00000020576.11	ENSMUST00000042953.10	7234	52	0	0	0	0	multi-exon	TRUE	canonical	3	21	junction_37	10.8075685101282	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCTTTGAGTACTTCCTT	NA	False	NA	NA	False	AATAAA	-28	NA	13319133	13633812	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_13319266_13321164_13321220_13322657_13322695_13323788_13323867_13324175_13324224_13329388_13329433_13335183_13335318_13338671_13338806_13339882_13339982_13350093_13350233_13356904_13356974_13360176_13360306_13367698_13367763_13371645_13371840_13372856_13373115_13374269_13374396_13378336_13378489_13380617_13380759_13381024_13381104_13385831_13385937_13386274_13386412_13402783_13402868_13406824_13406979_13410931_13411118_13412442_13412617_13424696_13424831_13427434_13427498_13429647_13429771_13440925_13441029_13443303_13443534_13455374_13455488_13458194_13458309_13463528_13463643_13464784_13464943_13465645_13465733_13482897_13483063_13491467_13491582_13491862_13491948_13503053_13503131_13503485_13503624_13519841_13520072_13524127_13524239_13532386_13532638_13533710_13534046_13563370_13563590_13568945_13569149_13570695_13570786_13584380_13584577_13608612_13608753_13610837_13610977_13616129_13616259_13633391
transcript_18757.nnic	chr12	-	772	3	Intergenic	novelGene_14	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTGGGAGAGAAAGTGGAT	NA	False	NA	NA	False	NA	NA	NA	15056935	15051231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr12_-_15051345_15051635_15051814_15056454
transcript_18760.known	chr12	-	5581	21	FSM	ENSMUSG00000020593.17	ENSMUST00000067124.6	5581	21	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_16	22.2780160696593	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGAATCCACAAGCCCCAG	7242	False	NA	NA	False	NA	NA	NA	16639771	16585669	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_16588574_16590914_16591019_16591714_16591830_16594644_16594798_16596721_16596809_16597486_16597636_16598877_16599005_16603949_16604030_16608409_16608503_16610982_16611053_16612363_16612458_16613622_16613814_16614526_16614621_16615391_16615699_16618390_16618521_16621164_16621264_16623660_16623787_16626948_16627257_16629882_16629979_16630704_16630906_16639718
transcript_18761.nnic	chr12	-	1159	3	Intergenic	novelGene_15	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCAGGCAACTAGGGTGA	NA	False	NA	NA	False	NA	NA	NA	16680086	16672371	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr12_-_16672492_16672625_16672716_16679137
transcript_18762.known	chr12	-	4114	20	FSM	ENSMUSG00000020593.17	ENSMUST00000221230.2	4114	20	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_15	24.5031514734934	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAGAAAAAAAGCAGT	7239	False	NA	NA	False	NA	NA	NA	16639774	16587040	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_16588574_16590914_16591019_16591714_16591830_16594644_16594798_16596721_16596809_16597486_16597636_16598877_16599005_16603949_16604030_16608409_16608503_16610982_16611053_16612363_16612458_16613622_16613814_16614526_16614621_16615391_16615699_16618390_16618521_16623660_16623787_16626948_16627257_16629882_16629979_16630704_16630906_16639718
transcript_18764.nnic	chr12	-	1487	6	NNC	ENSMUSG00000036523.17	novel	978	5	NA	NA	3653	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	3.00665927567458	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTCACTTTGCATGTTG	NA	False	NA	NA	False	AATAAA	-43	NA	16803543	16773177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_16773436_16774758_16774942_16783278_16783456_16785146_16785267_16789889_16790256_16803160
transcript_18765.known	chr12	-	978	5	FSM	ENSMUSG00000036523.17	ENSMUST00000159573.2	978	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	2.29128784747792	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTCACTTTGCATGTTG	80	False	NA	NA	False	AATAAA	-43	NA	16790129	16773177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_16773436_16774758_16774942_16783278_16783456_16785146_16785267_16789889
transcript_18766.known	chr12	+	2362	8	FSM	ENSMUSG00000057469.9	ENSMUST00000221541.2	2362	8	0	0	0	0	multi-exon	FALSE	canonical	2	121	junction_1	60.8859757318245	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGCGTGCCTGTGTTTC	7532	False	NA	4	True	ATTAAA	-15	NA	16861099	16876753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_16861317_16863847_16863914_16866400_16866456_16868841_16869059_16870229_16870386_16872093_16872209_16874570_16874719_16875365
transcript_18767.known	chr12	+	2418	7	FSM	ENSMUSG00000057469.9	ENSMUST00000020908.9	2418	7	0	0	0	0	multi-exon	FALSE	canonical	2	127	junction_1	56.1505911713215	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGCGTGCCTGTGTTTC	7410	False	NA	4	True	ATTAAA	-15	NA	16860977	16876753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_16861317_16866400_16866456_16868841_16869059_16870229_16870386_16872093_16872209_16874570_16874719_16875365
transcript_18770.known	chr12	-	1928	7	FSM	ENSMUSG00000045679.15	ENSMUST00000054536.11	1928	7	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_2	25.4165300542777	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTAAGCTGTCATGAATT	NA	False	NA	1	True	AATAAA	-26	NA	17050119	17038648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_17039897_17042278_17042321_17043453_17043575_17045614_17045673_17047634_17047705_17047774_17047858_17049813
transcript_18772.known	chr12	-	1706	6	FSM	ENSMUSG00000045679.15	ENSMUST00000222203.2	1706	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	66.9943281181325	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTAGTTTTCTATATTTA	NA	False	NA	-49	True	AGTAAA	-18	NA	17050068	17038698	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_17039897_17042278_17042321_17045614_17045673_17047634_17047705_17047774_17047858_17049813
transcript_18773.known	chr12	-	922	6	FSM	ENSMUSG00000045679.15	ENSMUST00000067572.13	922	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	73.8322422793728	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTAGTGTTTTGCCCAA	NA	False	NA	NA	False	ATTAAA	-12	NA	17050026	17042961	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_17043339_17043453_17043575_17045614_17045673_17047634_17047705_17047774_17047858_17049813
transcript_18777.known	chr12	-	3437	5	FSM	ENSMUSG00000071398.9	ENSMUST00000095823.9	3437	5	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_1	0.82915619758885	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGCCTTGGTCATGGTG	NA	False	NA	NA	False	NA	NA	NA	17061728	17053319	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_17056000_17057020_17057238_17058273_17058314_17061128_17061353_17061452
transcript_18778.nic	chr12	-	843	4	ISM	ENSMUSG00000071398.9	ENSMUST00000095823.9	3437	5	126	3489	-47	332	5prime_fragment	FALSE	canonical	1	2	junction_1	0.816496580927726	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCTTGGTCTGTCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	17061602	17056808	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_-_17057238_17058273_17058314_17061128_17061353_17061452
transcript_18782.known	chr12	-	1425	13	FSM	ENSMUSG00000020566.20	ENSMUST00000221129.2	1425	13	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_8	6.04841577054135	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTCTTTTCTTGTGTTCT	NA	False	NA	-2	True	AATAAA	-12	NA	17374731	17334725	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_17334950_17335113_17335247_17338083_17338182_17341429_17341524_17341628_17341722_17344145_17344215_17344676_17344776_17347729_17347822_17351121_17351217_17358272_17358359_17371598_17371667_17373338_17373512_17374630
transcript_18784.known	chr12	+	1986	11	FSM	ENSMUSG00000020571.14	ENSMUST00000162936.8	1986	11	0	0	0	0	multi-exon	FALSE	canonical	3	2590	junction_6	177.381199680237	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTTTAGAGTTTTGTGT	NA	False	NA	NA	False	AATAAA	-14	NA	17316545	17331811	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_17316653_17320396_17320539_17323945_17324004_17324384_17324512_17327198_17327306_17328514_17328646_17328836_17328952_17329579_17329721_17330378_17330464_17330567_17330641_17330911
transcript_18785.known	chr12	+	491	2	FSM	ENSMUSG00000020571.14	ENSMUST00000163000.2	491	2	0	0	0	0	multi-exon	FALSE	canonical	3	2973	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGATACGGGGTGAGTGTGT	NA	False	NA	NA	False	NA	NA	NA	17327241	17328941	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_17327306_17328514
transcript_18786.nnic	chr12	-	967	3	NNC	ENSMUSG00000114024.2	novel	279	3	NA	NA	-36	786	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.5	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGTGACCATGTTTGAAT	NA	False	NA	NA	False	NA	NA	NA	17398410	17393615	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_17394304_17394398_17394550_17398282
transcript_18788.nnic	chr12	-	615	3	NNC	ENSMUSG00000114024.2	novel	279	3	NA	NA	-36	434	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.5	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGCTCGAGCTGTTTAAT	NA	False	NA	NA	False	NA	NA	NA	17398410	17393967	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_17394304_17394398_17394550_17398282
transcript_18791.known	chr12	+	3021	21	FSM	ENSMUSG00000061458.10	ENSMUST00000046011.12	3021	21	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_7	25.2103153490788	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTATTTGTTTAGCTTA	NA	False	NA	14	True	AATAAA	-17	NA	17398458	17480096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_17398621_17400516_17400563_17402641_17402741_17405237_17405316_17406921_17406960_17408102_17408240_17409090_17409157_17411134_17411196_17412595_17412682_17418309_17418389_17419466_17419617_17423562_17423630_17429248_17429302_17452073_17452201_17454971_17455052_17455233_17455333_17456807_17456898_17466028_17466200_17466714_17466963_17474650_17474754_17479115
transcript_18796.nnic	chr12	+	1681	5	NIC	ENSMUSG00000071379.3	novel	1526	4	NA	NA	-69	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	31.8541598539343	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTGAGTTTCCTGTGT	8555	False	NA	17	True	AATAAA	-5	NA	17740787	17841934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_17741048_17817214_17817301_17836147_17836550_17837545_17837652_17841107
transcript_18797.known	chr12	+	697	5	FSM	ENSMUSG00000071379.3	ENSMUST00000222944.2	697	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	35.2304910553344	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCATCAAAGGTGCCAAGAG	NA	False	NA	NA	False	NA	NA	NA	17778226	17841127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_17778310_17817214_17817301_17836147_17836550_17837545_17837652_17841107
transcript_18800.known	chr12	+	1526	4	FSM	ENSMUSG00000071379.3	ENSMUST00000071858.5	1526	4	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	8.52447456836295	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTGAGTTTCCTGTGT	8624	False	NA	17	True	AATAAA	-5	NA	17740856	17841934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_17741048_17836147_17836550_17837545_17837652_17841107
transcript_18801.nnic	chr12	+	1482	4	NIC	ENSMUSG00000071379.3	novel	697	5	NA	NA	-64	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	39.0412886854702	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTGAGTTTCCTGTGT	NA	False	NA	17	True	AATAAA	-5	NA	17778162	17841934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_17778310_17836147_17836550_17837545_17837652_17841107
transcript_18808.nnic	chr12	+	526	4	NNC	ENSMUSG00000113642.2	novel	550	2	NA	NA	-8542	-161012	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	65.2192882171797	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACATTGCCTTAAGAGATA	NA	False	NA	NA	False	NA	NA	NA	17942192	17951453	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_17942310_17950660_17950788_17950987_17951049_17951232
transcript_18809.nnic	chr12	+	2770	4	NNC	ENSMUSG00000114025.2	novel	1214	3	NA	NA	-10211	-507	intron_retention	FALSE	canonical	3	17	junction_3	60.3342541366198	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATACTGGAGAGAAATTCTA	NA	False	NA	3	True	NA	NA	NA	17942178	17954169	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_17942310_17950660_17950788_17950987_17951049_17951718
transcript_18810.nnic	chr12	+	2200	4	NNC	ENSMUSG00000114025.2	novel	1214	3	NA	NA	-10283	-478	intron_retention	FALSE	canonical	3	46	junction_1	45.4190366354119	89	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATGTGGTAAAGCCTTTA	NA	False	NA	32	True	NA	NA	NA	17942106	17954198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_17942310_17950660_17950788_17950987_17951049_17952389
transcript_18811.nnic	chr12	+	955	4	NNC	ENSMUSG00000113536.2	novel	540	3	NA	NA	-41058	-4947	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	63.545259461269	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCCCAGCTGAGTTCATCC	NA	False	NA	NA	False	AATAAA	-35	NA	17942106	17983937	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_17942310_17950660_17950788_17950987_17951049_17983373
transcript_18813.nnic	chr12	+	2189	4	NNC	ENSMUSG00000114025.2	novel	1214	3	NA	NA	-10223	-478	intron_retention	FALSE	canonical	3	10	junction_1	60.256857608814	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATGTGGTAAAGCCTTTA	NA	False	NA	32	True	NA	NA	NA	17942166	17954198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_17942310_17950611_17950788_17950987_17951049_17952389
transcript_18819.known	chr12	+	1132	1	FSM	ENSMUSG00000073198.6	ENSMUST00000220709.2	1132	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	191	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTAGTCTTTGTTTTG	NA	False	NA	NA	False	AAAAAG	-2	NA	18266542	18267674	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_18266500_18267700
transcript_1882.known	chr1	+	774	4	FSM	ENSMUSG00000073676.5	ENSMUST00000075242.7	774	4	0	0	0	0	multi-exon	FALSE	canonical	3	7281	junction_2	538.928154354136	86869	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGACAGTCTTTGGTAATT	NA	False	NA	13	True	AATAAA	-14	NA	55127290	55130466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_55127572_55128209_55128375_55129871_55129962_55130228
transcript_18824.nnic	chr12	+	968	4	Genic_Genomic	ENSMUSG00000113110.2	novel	494	1	NA	NA	-31508	105	multi-exon	FALSE	canonical	1	3	junction_2	1.69967317119759	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATCAAATGGGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	19236574	19268681	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr12_+_19236734_19246674_19246802_19247002_19247064_19268060
transcript_18825.known	chr12	+	494	1	FSM	ENSMUSG00000113110.2	ENSMUST00000221548.2	494	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTGCATGTCTTTGCAGA	NA	False	NA	NA	False	ACTAAA	-1	NA	19268082	19268576	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_19268100_19268600
transcript_18826.nnic	chr12	+	962	5	NNC	ENSMUSG00000073184.5	novel	241	3	NA	NA	-97	7832	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_4	8.86002257333467	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAAAGAATATGGTGAG	NA	False	NA	NA	False	AAAAAG	-4	NA	19342716	19359097	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_19342877_19350884_19351012_19351214_19351276_19357966_19358092_19358608
transcript_18829.nnic	chr12	+	1031	4	NNC	ENSMUSG00000073184.5	novel	241	3	NA	NA	-97	8026	at_least_one_novel_splicesite	FALSE	canonical	2	24	junction_3	2.62466929133727	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTATTTCTTATTTTATTA	NA	False	NA	NA	False	NA	NA	NA	19342716	19359291	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_19342877_19350884_19351012_19351214_19351276_19358608
transcript_1883.known	chr1	-	863	5	FSM	ENSMUSG00000025980.15	ENSMUST00000127861.8	863	5	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_4	2615.80354528011	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGTATGGGATTTGATAC	4236	False	NA	69	True	AAAAAG	-31	NA	55127402	55122225	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55127147
transcript_18832.nnic	chr12	-	2228	4	Genic_Genomic	ENSMUSG00000113411.2	novel	370	1	NA	NA	-9895	-347	multi-exon	FALSE	canonical	0	0	junction_3	1.69967317119759	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTCTATGAATGTAATCAAT	NA	False	NA	NA	False	NA	NA	NA	19925391	19915473	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr12_-_19917357_19918884_19918946_19919142_19919270_19925234
transcript_18833.nic	chr12	+	454	3	ISM	ENSMUSG00000116606.2	ENSMUST00000232483.2	654	4	-47	1582	-47	-1582	5prime_fragment	FALSE	canonical	3	28	junction_1	60	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATTTATTATATGTAAG	NA	False	NA	NA	False	NA	NA	NA	20476866	20483836	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_20476993_20483306_20483434_20483635
transcript_18842.nnic	chr12	-	677	3	NNC	ENSMUSG00000099759.2	novel	1735	2	NA	NA	-1	32266	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1.5	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGTGTGAGTTGTGTTG	NA	False	NA	NA	False	AATAAA	-21	NA	20865781	20822115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_20822270_20848304_20848393_20865346
transcript_18844.nnic	chr12	-	687	2	NNC	ENSMUSG00000099759.2	novel	1735	2	NA	NA	-1	6241	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCCAGCTATAAAGTCATT	NA	False	NA	NA	False	NA	NA	NA	20865781	20848140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_20848393_20865346
transcript_18845.known	chr12	-	1735	2	FSM	ENSMUSG00000099759.2	ENSMUST00000189625.2	1735	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCTTCTCACTTTATACA	NA	False	NA	NA	False	GGGGCT	-1	NA	20865780	20854381	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_20855683_20865346
transcript_18846.known	chr12	-	1471	1	FSM	ENSMUSG00000091071.3	ENSMUST00000110971.3	1471	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAACTAGACTA	NA	False	NA	NA	False	AAGAAA	-25	NA	20865728	20864257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_20864300_20865700
transcript_18847.known	chr12	-	928	6	FSM	ENSMUSG00000069755.6	ENSMUST00000208744.2	928	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	1.49666295470958	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACCTTATGAATGTCATC	NA	False	NA	NA	False	NA	NA	NA	20971263	20950743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_20950936_20952270_20952332_20952533_20952661_20964759_20964843_20965748_20965793_20970842
transcript_18851.nnic	chr12	+	442	4	NNC	ENSMUSG00000116627.2	novel	1230	4	NA	NA	13270	-19178	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	35.4400902933387	13	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	21053806	21071251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_21053965_21062987_21063115_21063316_21063378_21071155
transcript_18856.known	chr12	+	2499	18	FSM	ENSMUSG00000054309.10	ENSMUST00000067284.10	2499	18	0	0	0	0	multi-exon	FALSE	canonical	3	692	junction_10	70.3324286444819	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTTGTGCCACAGCTTT	NA	False	NA	NA	False	NA	NA	NA	21336358	21365057	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_21336546_21340248_21340313_21341751_21341850_21343226_21343356_21345030_21345209_21346647_21346738_21347789_21347941_21350042_21350219_21351416_21351576_21352359_21352507_21355303_21355457_21356773_21356883_21357993_21358093_21358904_21359000_21360197_21360286_21362298_21362369_21363767_21363865_21364648
transcript_18867.known	chr12	-	1701	7	FSM	ENSMUSG00000062352.16	ENSMUST00000173729.8	1701	7	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_6	78.2148039411693	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAATCACTGCATTAAGAC	NA	False	NA	NA	False	ATTAAA	-13	NA	21336098	21320093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_21320959_21321419_21321570_21322056_21322150_21324766_21324904_21326820_21326900_21329400_21329532_21335852
transcript_18868.known	chr12	-	1921	7	FSM	ENSMUSG00000062352.16	ENSMUST00000076260.12	1921	7	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_3	20.4728817924807	1545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATGCTTTCCTTTCAGTT	NA	False	NA	NA	False	TATAAA	-10	NA	21336285	21319806	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_21320959_21321419_21321570_21322056_21322150_21324766_21324904_21326820_21326900_21329400_21329532_21336106
transcript_1887.known	chr1	+	1816	7	FSM	ENSMUSG00000025979.14	ENSMUST00000159311.8	1816	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	175.833886255055	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCAGCCGGGCGGTGGTGG	NA	False	NA	NA	False	NA	NA	NA	55170389	55193097	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_55170519_55184282_55184384_55187477_55187521_55187706_55187794_55189304_55189385_55190129_55190242_55191833
transcript_18872.known	chr12	-	801	6	FSM	ENSMUSG00000062352.16	ENSMUST00000172834.2	801	6	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_2	20.9818969590454	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTCAGACAGGCTATGAGA	NA	False	NA	NA	False	AATAAA	-16	NA	21336186	21321288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_21321570_21322056_21322150_21324766_21324904_21326820_21326900_21329400_21329532_21336106
transcript_18876.known	chr12	+	1858	13	FSM	ENSMUSG00000054309.10	ENSMUST00000222968.2	1858	13	0	0	0	0	multi-exon	FALSE	canonical	2	20	junction_11	221.93434652317	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTCCTAAAATTTTATTTA	NA	False	NA	NA	False	TTTAAA	-6	NA	21336399	21358237	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_21336546_21340248_21340313_21341751_21341850_21343226_21343356_21345030_21345209_21346647_21346738_21347789_21347941_21350042_21350219_21351416_21351576_21352359_21352507_21355303_21355471_21356773_21356883_21357993
transcript_18877.known	chr12	-	4423	19	FSM	ENSMUSG00000052593.17	ENSMUST00000127974.8	4423	19	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_14	36.8288081684856	329	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATGAATGATACGAGCCA	NA	False	NA	NA	False	AATAAA	-36	NA	21423594	21373517	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_21375628_21376119_21376171_21378045_21378135_21379054_21379134_21380033_21380165_21382076_21382212_21382570_21382675_21383954_21384155_21386633_21386787_21390472_21390562_21390675_21390821_21392864_21392979_21395621_21395712_21397297_21397451_21399785_21399955_21401543_21401633_21403883_21404015_21411659_21411793_21423336
transcript_18890.known	chr12	+	1141	6	FSM	ENSMUSG00000062054.8	ENSMUST00000076813.8	1141	6	0	0	0	0	multi-exon	FALSE	canonical	3	356	junction_4	39.1131691377725	1470	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCACAATTTTATAAAAATG	NA	False	NA	NA	False	AATACA	-25	NA	21366389	21373820	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_21366514_21367376_21367430_21367898_21368048_21369770_21369933_21371334_21371457_21373289
transcript_1890.known	chr1	+	2840	8	FSM	ENSMUSG00000025979.14	ENSMUST00000162364.8	2840	8	0	0	0	0	multi-exon	FALSE	canonical	3	402	junction_7	40.5985824624356	1575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTTTGTATTCTTGCTTT	NA	False	NA	13	True	CATAAA	-13	NA	55170389	55194058	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_55170519_55175835_55175899_55184282_55184384_55187477_55187521_55187706_55187794_55189304_55189385_55190129_55190242_55191833
transcript_18901.known	chr12	+	554	4	FSM	ENSMUSG00000097055.3	ENSMUST00000226706.2	554	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.24721912892465	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTCTCTCCTATTTTTAC	NA	False	NA	NA	False	AATAAA	-15	NA	21467941	21471065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_21468017_21468216_21468292_21468630_21468836_21470866
transcript_18902.known	chr12	-	2197	6	FSM	ENSMUSG00000076432.14	ENSMUST00000135088.9	2197	6	0	0	0	0	multi-exon	FALSE	canonical	3	2872	junction_5	274.352328220484	5531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTGGCTGGTATTAGAAT	NA	False	NA	-12	True	AATAAA	-18	NA	21467638	21440071	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21467133_21467504
transcript_18903.known	chr12	-	1970	7	FSM	ENSMUSG00000076432.14	ENSMUST00000155480.9	1970	7	0	0	0	0	multi-exon	FALSE	canonical	2	21	junction_1	1514.35583114846	710	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTATTATGGCTTTGTA	NA	False	NA	NA	False	AATAAA	-17	NA	21467589	21440332	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_21441417_21441717_21441801_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21467133_21467504
transcript_18907.known	chr12	+	321	3	FSM	ENSMUSG00000109975.2	ENSMUST00000210709.2	321	3	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_2	13	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAAGTTCTTAAAGTCAAG	6100	False	NA	NA	False	AATAAA	-23	NA	21593307	21600058	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_21593347_21595309_21595401_21599867
transcript_18908.known	chr12	+	363	4	FSM	ENSMUSG00000109975.2	ENSMUST00000211164.2	363	4	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_3	54.7783412186483	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGACAAAGGCGTTTTTT	6100	False	NA	NA	False	ACTAAA	-18	NA	21593307	21604522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_21593347_21595309_21595401_21599867_21599956_21604377
transcript_18909.known	chr12	+	357	4	FSM	ENSMUSG00000109975.2	ENSMUST00000209258.2	357	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	78.4106001904221	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCCTGGACCCTGACATG	8102	False	NA	NA	False	NA	NA	NA	21595309	21604475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_21595383_21599867_21599956_21604009_21604108_21604377
transcript_1891.nnic	chr1	-	764	5	NNC	ENSMUSG00000025978.15	novel	1870	8	NA	NA	7787	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	3.56195171219375	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTGCTACTACTATCTTC	NA	False	NA	NA	False	ATTAAA	-19	NA	55237861	55210906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_55211242_55224108_55224188_55233402_55233507_55234674_55234797_55237737
transcript_18912.nnic	chr12	-	1678	4	NNC	ENSMUSG00000073158.5	novel	2245	4	NA	NA	10381	-310	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	11.8602979164381	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATAATTTGTATTGTTTGG	NA	False	NA	NA	False	AGTAAA	-43	NA	24136866	24093512	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_24094856_24124359_24124421_24124622_24124750_24136719
transcript_18913.known	chr12	-	2245	4	FSM	ENSMUSG00000073158.5	ENSMUST00000101538.5	2245	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	14.7044966667418	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACCTTGTCTGTGAAATT	NA	False	NA	NA	False	NA	NA	NA	24147247	24093202	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_24094856_24124359_24124421_24124622_24124750_24146843
transcript_18914.nnic	chr12	-	732	3	NNC	ENSMUSG00000073158.5	novel	2245	4	NA	NA	10381	-30760	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	8	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAACATTGCCTTAAGAGAT	NA	False	NA	NA	False	NA	NA	NA	24136866	24123962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_24124421_24124622_24124750_24136719
transcript_18915.nnic	chr12	-	700	3	NNC	ENSMUSG00000073158.5	novel	2245	4	NA	NA	-129093	-30760	at_least_one_novel_splicesite	FALSE	canonical	2	24	junction_2	2.5	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAACATTGCCTTAAGAGAT	NA	False	NA	NA	False	NA	NA	NA	24276340	24123962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_24124421_24124622_24124750_24276225
transcript_18916.nnic	chr12	-	895	4	NNC	ENSMUSG00000114120.2	novel	578	3	NA	NA	-43383	-4883	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9.84321537348893	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGCTCATCCATCAGGT	NA	False	NA	NA	False	NA	NA	NA	24401635	24357690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_24358277_24390254_24390316_24390513_24390641_24401514
transcript_18918.known	chr12	+	2209	15	FSM	ENSMUSG00000059669.9	ENSMUST00000075954.9	2209	15	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_4	28.2355254592363	705	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACACCTGGAAACTTGCAT	NA	False	NA	12	True	ATTAAA	-21	NA	24548357	24608538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_24548649_24550434_24550534_24554945_24555034_24559082_24559181_24559452_24559549_24564783_24564935_24566857_24567009_24573100_24573201_24594269_24594418_24597011_24597190_24597568_24597616_24599417_24599509_24605988_24606060_24606517_24606741_24608161
transcript_18921.known	chr12	+	1840	14	FSM	ENSMUSG00000059669.9	ENSMUST00000221372.2	1840	14	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_3	59.0833329855924	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACACCTGGAAACTTGCAT	NA	False	NA	12	True	ATTAAA	-21	NA	24548628	24608538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_24548649_24550434_24550534_24554945_24555034_24559452_24559549_24564783_24564935_24566857_24567009_24573100_24573201_24594269_24594418_24597011_24597190_24597568_24597616_24599417_24599509_24605988_24606060_24606517_24606741_24608161
transcript_18931.known	chr12	+	521	4	FSM	ENSMUSG00000059669.9	ENSMUST00000222710.2	521	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_3	107.002596022506	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATCTTCTGTCTTAGTTA	NA	False	NA	NA	False	ATTAAA	-18	NA	24548609	24559747	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_24548649_24550434_24550534_24554945_24555034_24559452
transcript_18933.known	chr12	+	1484	12	FSM	ENSMUSG00000059669.9	ENSMUST00000223503.2	1484	12	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_4	27.2065864655498	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATTTCCCCGTTTTTTTCT	NA	False	NA	NA	False	ATTAAA	-14	NA	24548627	24599724	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_24548649_24550434_24550534_24554945_24555034_24559082_24559181_24559452_24559549_24564783_24564935_24566857_24567009_24573100_24573201_24594269_24594418_24597011_24597190_24597568_24597616_24599417
transcript_18936.known	chr12	+	2193	10	FSM	ENSMUSG00000020649.12	ENSMUST00000020980.12	2193	10	0	0	0	0	multi-exon	FALSE	canonical	3	5416	junction_9	442.930588436653	1992	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCTTTGGGTAAAATGTAC	NA	False	NA	72	True	ATTAAA	-26	NA	24758239	24764145	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
transcript_1894.nic	chr1	+	889	2	ISM	ENSMUSG00000097649.3	ENSMUST00000209801.2	751	3	-74	6172	-27	-6172	5prime_fragment	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGCAAAAAAA	NA	False	NA	NA	False	CATAAA	-39	NA	55265382	55268016	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_55265910_55267654
transcript_18953.known	chr12	+	2351	13	FSM	ENSMUSG00000020646.18	ENSMUST00000110942.11	2351	13	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_3	25.3874148611735	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGAGGGAAGCTAAGATAA	NA	False	NA	NA	False	NA	NA	NA	24881621	25009873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_24881774_24928189_24928336_24932715_24932794_24974197_24974294_24984565_24984622_24989292_24989348_24996504_24996686_24998186_24998380_25001384_25001489_25004184_25004250_25005275_25005409_25007571_25007724_25008933
transcript_18958.known	chr12	+	6792	12	FSM	ENSMUSG00000020646.18	ENSMUST00000221952.2	6792	12	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	37.4053074415034	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACCTGTGTTTGTGTTTGC	NA	False	NA	NA	False	ATTAAA	-14	NA	24881607	25014396	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_24881774_24928189_24928336_24932715_24932794_24984565_24984622_24989292_24989348_24996504_24996686_24998186_24998380_25001384_25001489_25004184_25004250_25005275_25005409_25007571_25007724_25008933
transcript_18961.known	chr12	+	2467	10	FSM	ENSMUSG00000020646.18	ENSMUST00000078902.8	2467	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	44.1864735461481	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTAGATTCTATCTAAACA	NA	False	NA	NA	False	ATTAAA	-31	NA	24881616	25010304	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_24881774_24984565_24984622_24989292_24989348_24996504_24996686_24998186_24998380_25001384_25001489_25004184_25004250_25005275_25005409_25007571_25007724_25008933
transcript_18968.nnic	chr12	-	575	2	Antisense	novelGene_ENSMUSG00000020646.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	15	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGGGGAAAGTACGCAAGCA	480	False	NA	NA	False	ATTAAA	-20	NA	25002400	25000204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr12_-_25000511_25002131
transcript_18970.known	chr12	+	1115	8	FSM	ENSMUSG00000036333.12	ENSMUST00000221378.2	1115	8	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_5	7.39553091745416	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAATGTCCTTATTTTTA	NA	False	NA	NA	False	AATAAA	-16	NA	25024927	25045155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_25025062_25032235_25032377_25036902_25037002_25038530_25038630_25039736_25039836_25040674_25040774_25042208_25042308_25044810
transcript_18973.known	chr12	-	1270	3	FSM	ENSMUSG00000020644.10	ENSMUST00000020974.7	1270	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	1	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCCGGGATTCTGAATGG	NA	False	NA	NA	False	AATAAA	-15	NA	25146091	25143799	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_25144576_25145309_25145374_25145661
transcript_18975.known	chr12	-	4812	9	FSM	ENSMUSG00000020642.14	ENSMUST00000062149.6	4812	9	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_8	8.26041009877839	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCATTTGTGGTTTTGCAG	8872	False	NA	NA	False	NA	NA	NA	26465215	26357032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_26360789_26364018_26364109_26367647_26367796_26370950_26371159_26377276_26377338_26377501_26377607_26389304_26389451_26439392_26439575_26465099
transcript_18976.nnic	chr12	+	579	3	NNC	ENSMUSG00000113616.2	novel	389	2	NA	NA	-5810	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.5	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGTTGTGGTAAATACAG	NA	False	NA	NA	False	AATAAA	-14	NA	28024785	28032233	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_28024973_28030592_28030692_28031940
transcript_18981.nnic	chr12	-	1387	11	NNC	ENSMUSG00000020636.15	novel	1384	12	NA	NA	11446	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	2.7	20	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTCTTGATCTCCTGTTG	2391	False	NA	NA	False	AATAAA	-17	NA	28621068	28603753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_28604047_28605262_28605388_28607340_28607450_28609237_28609312_28609868_28610025_28613369_28613503_28614233_28614314_28615395_28615525_28618000_28618089_28620608_28620660_28620919
transcript_18984.known	chr12	-	954	7	FSM	ENSMUSG00000061477.5	ENSMUST00000074267.5	954	7	0	0	0	0	multi-exon	TRUE	canonical	3	10789	junction_4	2567.89392736971	64934	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTTTATGTCCTATTCTG	NA	False	NA	-7	True	NA	NA	NA	28685952	28680852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578_28685663_28685854
transcript_18985.known	chr12	-	820	6	FSM	ENSMUSG00000061477.5	ENSMUST00000221871.2	820	6	0	0	0	0	multi-exon	FALSE	canonical	3	10789	junction_4	2615.27425712869	2469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGGTTGTAGTAACTTGT	NA	False	NA	-11	True	AATAAA	-15	NA	28685856	28681082	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578
transcript_18986.known	chr12	-	403	3	FSM	ENSMUSG00000061477.5	ENSMUST00000222808.2	403	3	0	0	0	0	multi-exon	FALSE	canonical	3	12310	junction_1	2151.5	603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTGTAGTAACTTGTC	NA	False	NA	-10	True	AATAAA	-16	NA	28683907	28681081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_28681193_28681622_28681774_28683766
transcript_1899.known	chr1	-	882	10	FSM	ENSMUSG00000025977.16	ENSMUST00000087585.10	882	10	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	6.71831842570265	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTCTGGTTTTCTTCC	NA	False	NA	NA	False	ATTAAA	-19	NA	55402478	55339227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_55339345_55343656_55343786_55344834_55344883_55362808_55362881_55379631_55379760_55385535_55385612_55388039_55388095_55394806_55394899_55399774_55399919_55402457
transcript_18990.known	chr12	+	1455	8	FSM	ENSMUSG00000020630.10	ENSMUST00000020959.9	1455	8	0	0	0	0	multi-exon	TRUE	canonical	3	155	junction_3	35.1318217284442	1486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACATCTAGTTTGAGTTA	NA	False	NA	13	True	AATAAA	-21	NA	28699600	28709588	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_28699816_28702023_28702140_28703061_28703224_28705583_28705684_28707270_28707326_28707631_28707717_28708169_28708295_28708991
transcript_18991.known	chr12	+	1368	7	FSM	ENSMUSG00000020630.10	ENSMUST00000223322.2	1368	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	93.4768242221924	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAGAACACATCTAGTTT	NA	False	NA	7	True	AATAAA	-15	NA	28699622	28709582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_28699816_28702023_28702140_28703061_28703224_28705583_28705684_28707635_28707717_28708169_28708295_28708991
transcript_18992.known	chr12	+	1652	4	FSM	ENSMUSG00000020629.13	ENSMUST00000020957.13	1652	4	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_2	13.6950923894494	1980	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTCTCTCGAGAGTTCT	NA	False	NA	15	True	NA	NA	NA	28725229	28732174	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_28725372_28727776_28727897_28729388_28729569_28730964
transcript_18993.known	chr12	-	3377	12	FSM	ENSMUSG00000020628.17	ENSMUST00000020954.15	3377	12	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_11	21.61993264567	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTCCTGAGGAGACATGAG	8249	False	NA	-30	True	AATAAA	-19	NA	28800452	28740627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_28741557_28741757_28741846_28742492_28742594_28747142_28747242_28751534_28751609_28753524_28753598_28761870_28761984_28771050_28771190_28772361_28772476_28787731_28787849_28796297_28797536_28800160
transcript_18994.known	chr12	-	3230	12	FSM	ENSMUSG00000020628.17	ENSMUST00000168129.10	3230	12	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_11	21.4240924087157	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCTGAGGAGACATGAGC	8230	False	NA	-29	True	AATAAA	-20	NA	28800471	28740626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_28741557_28741757_28741846_28742492_28742594_28747142_28747242_28751534_28751609_28753524_28753598_28761870_28761984_28771050_28771190_28772361_28772476_28787731_28787849_28796297_28797536_28800327
transcript_19.known	ERCC-00042	+	1007	1	FSM	ERCC-00042A	DQ516783	1007	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	818	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	AAAACA	-5	NA	0	1007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00042_+_0_1000
transcript_1900.known	chr1	-	658	5	FSM	ENSMUSG00000025977.16	ENSMUST00000159398.2	658	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	5.78791845139511	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTGGTGCTTATATAAA	NA	False	NA	NA	False	AATAAA	-12	NA	55402628	55385415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_55385612_55388039_55388095_55394806_55394899_55399774_55399919_55402457
transcript_19003.known	chr12	+	489	2	FSM	ENSMUSG00000036613.9	ENSMUST00000222407.2	489	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAAATTTGTAATGATTGC	1134	False	NA	NA	False	NA	NA	NA	28801837	28802741	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_28802004_28802418
transcript_19004.known	chr12	+	1747	10	FSM	ENSMUSG00000036613.9	ENSMUST00000035657.9	1747	10	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	106.926188918072	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGGCTCTTTGTTTGTTTT	1150	False	NA	7	True	NA	NA	NA	28801853	28917490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_28802004_28810068_28810153_28816770_28816904_28843853_28843936_28878706_28878864_28897555_28897656_28909250_28909388_28912953_28913122_28914668_28914834_28916919
transcript_1901.known	chr1	-	1106	10	FSM	ENSMUSG00000025977.16	ENSMUST00000114423.7	1106	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	9.78787357579789	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTCTGGTTTTCTTCC	NA	False	NA	NA	False	ATTAAA	-19	NA	55401885	55339227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_55339345_55343656_55343786_55344834_55344883_55362808_55362881_55379631_55379760_55385535_55385612_55388039_55388095_55394806_55394899_55399774_55399919_55401640
transcript_19013.known	chr12	+	2971	5	FSM	ENSMUSG00000043061.11	ENSMUST00000057151.10	2971	5	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_1	9.17877987534291	212	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATACAGTGTGCTTTCGT	NA	False	NA	NA	False	AATAAA	-12	NA	30634424	30641214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_30634562_30635468_30635590_30637198_30637254_30638472_30638567_30638650
transcript_19016.known	chr12	-	2754	6	FSM	ENSMUSG00000044573.17	ENSMUST00000074038.7	2754	6	0	0	0	0	multi-exon	FALSE	canonical	3	735	junction_4	354.017287713467	1523	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTTTGGGATTTTAATTG	NA	False	NA	NA	False	ATTAAA	-23	NA	30961588	30943654	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_30945953_30946114_30946221_30947743_30947806_30954716_30954831_30955067_30955142_30961488
transcript_19023.known	chr12	+	1750	10	FSM	ENSMUSG00000020669.16	ENSMUST00000020997.15	1750	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	6.36153564813317	180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTTTGTGTTCACTCAAT	8039	False	NA	16	True	AATAAA	-24	NA	30961666	31010161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_30962227_30972233_30972345_30974762_30974877_30976808_30976874_30989572_30989686_30990289_30990419_30991965_30992129_30992788_30992868_31008846_31008904_31009802
transcript_19026.known	chr12	+	3088	2	FSM	ENSMUSG00000036136.10	ENSMUST00000041133.10	3088	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTTTGGTATGTGCGGTT	NA	False	NA	NA	False	NA	NA	NA	31123859	31130250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_31125322_31128624
transcript_19027.known	chr12	-	207	1	FSM	ENSMUSG00000112567.2	ENSMUST00000219694.2	207	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	241	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGCAACAAGAAAATATTT	NA	False	NA	NA	False	NA	NA	NA	31308856	31308649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_31308600_31308900
transcript_19028.known	chr12	+	5557	34	FSM	ENSMUSG00000002900.18	ENSMUST00000169088.8	5557	34	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	26.2601941375773	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAGGGGCTGTAGAGGG	NA	False	NA	NA	False	NA	NA	NA	31315232	31379492	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_31315344_31315478_31315601_31316689_31316866_31319055_31319192_31322428_31322503_31328460_31328650_31328734_31328799_31332555_31332759_31335624_31335746_31337414_31337604_31337877_31338058_31338201_31338315_31339340_31339421_31347624_31347761_31348811_31348971_31349922_31350051_31350205_31350330_31351004_31351210_31352560_31352705_31352902_31353135_31354588_31354753_31355765_31355991_31356973_31357189_31357948_31358046_31368262_31368633_31369917_31370103_31370896_31371139_31373460_31373665_31374174_31374320_31376168_31376377_31376566_31376709_31377643_31377821_31379108_31379269_31379355
transcript_19029.known	chr12	+	5778	33	FSM	ENSMUSG00000002900.18	ENSMUST00000239496.2	5778	33	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_13	20.6626313894794	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATCCTATGTTTCTTTT	NA	False	NA	NA	False	AATAAA	-18	NA	31315292	31379638	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_31315601_31316689_31316866_31319055_31319192_31322428_31322503_31328460_31328650_31328734_31328799_31332555_31332759_31335624_31335746_31337414_31337604_31337877_31338058_31338201_31338315_31339340_31339421_31347624_31347761_31348811_31348971_31349922_31350051_31350205_31350330_31351004_31351210_31352560_31352705_31352902_31353135_31354588_31354753_31355765_31355991_31356973_31357189_31357948_31358046_31368262_31368633_31369917_31370103_31370896_31371139_31373460_31373665_31374174_31374320_31376168_31376377_31376566_31376709_31377643_31377821_31379108_31379269_31379355
transcript_19034.known	chr12	-	3900	6	FSM	ENSMUSG00000020659.17	ENSMUST00000101499.10	3900	6	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_4	37.6542162313864	177	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCCTAGATGAGTCTTT	NA	False	NA	NA	False	AATAAA	-19	NA	31549615	31534934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_31538314_31540466_31540541_31541510_31541595_31542077_31542179_31544580_31544749_31549521
transcript_19046.known	chr12	-	6155	8	FSM	ENSMUSG00000020650.16	ENSMUST00000177962.9	6155	8	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_3	46.0678293167714	707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTGACCACTGGTGTAT	NA	False	NA	NA	False	CATAAA	-16	NA	31684634	31640965	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_31646377_31650642_31650744_31667073_31667180_31674113_31674250_31676724_31676876_31680791_31680893_31684261_31684380_31684603
transcript_19054.nic	chr12	-	975	6	ISM	ENSMUSG00000020650.16	ENSMUST00000177962.9	6155	8	-37	25813	-14	17295	5prime_fragment	FALSE	canonical	3	313	junction_1	47.6931860961291	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACATTTTCTTCTGTCAT	NA	False	NA	NA	False	TATAAA	-20	NA	31684671	31666778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_-_31667180_31674113_31674250_31676724_31676876_31680791_31680893_31684261_31684380_31684603
transcript_1906.known	chr1	-	2052	4	FSM	ENSMUSG00000097519.3	ENSMUST00000181949.3	2052	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	26.1576417557513	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTCAAAATAGATTCTGTTA	NA	False	NA	NA	False	AATAAA	-19	NA	57416703	57398380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_57399823_57401724_57401923_57414406_57414679_57416563
transcript_19067.known	chr12	-	1773	7	FSM	ENSMUSG00000020648.4	ENSMUST00000020977.4	1773	7	0	0	0	0	multi-exon	FALSE	canonical	2	86	junction_6	14.7016627933336	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGGTATGACTCGCCTGTA	9060	False	NA	-5	True	AATAAA	-17	NA	31704825	31690048	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_31690944_31691500_31691728_31692762_31692886_31696619_31696738_31698764_31698887_31702289_31702441_31704688
transcript_19068.nnic	chr12	-	1809	7	NNC	ENSMUSG00000020648.4	novel	1773	7	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	41.3145118437685	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGGTATGACTCGCCTGTA	9044	False	NA	-5	True	AATAAA	-17	NA	31704841	31690048	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_31690944_31691500_31691748_31692762_31692886_31696619_31696738_31698764_31698887_31702289_31702441_31704688
transcript_19074.known	chr12	-	296	1	FSM	ENSMUSG00000020648.4	ENSMUST00000219855.2	296	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATTGAGTTGGTCTGG	9110	False	NA	NA	False	AATAAA	-21	NA	31704775	31704479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_31704500_31704800
transcript_19075.known	chr12	+	2997	23	FSM	ENSMUSG00000035933.6	ENSMUST00000036862.5	2997	23	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_22	24.2086317506725	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGTGTTTCTTCCTTCCA	NA	False	NA	12	True	AATAAA	-19	NA	31704867	31987629	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_31704983_31710715_31710856_31715463_31715522_31719768_31719824_31720314_31720385_31735651_31735773_31810845_31810977_31840845_31841012_31851981_31852095_31852404_31852483_31870123_31870206_31883180_31883386_31887193_31887356_31889753_31889854_31919417_31919529_31920070_31920134_31936203_31936308_31943969_31944208_31950895_31950973_31969649_31969777_31970552_31970633_31975643_31975791_31987175
transcript_19086.nic	chr12	+	1181	5	ISM	ENSMUSG00000035933.6	ENSMUST00000036862.5	2997	23	245732	0	6480	0	3prime_fragment	FALSE	canonical	3	25	junction_4	29.4819860253681	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGTGTTTCTTCCTTCCA	1002	False	NA	12	True	AATAAA	-19	NA	31950599	31987629	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_31950973_31969649_31969777_31970552_31970633_31975643_31975791_31987175
transcript_19088.nic	chr12	+	762	4	ISM	ENSMUSG00000035933.6	ENSMUST00000219672.2	750	5	6480	196	6480	-196	3prime_fragment	FALSE	canonical	3	90	junction_2	3.77123616632825	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTTCCTCTTTCTGTTA	1002	False	NA	NA	False	ACTAAA	-18	NA	31950599	31975825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_31950973_31969649_31969777_31970552_31970633_31975643
transcript_1909.nnic	chr1	-	1058	3	NNC	ENSMUSG00000097519.3	novel	2052	4	NA	NA	-23	-2968	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	35	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTATGGCTACACAATGCT	NA	False	NA	NA	False	NA	NA	NA	57416726	57401348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_57401923_57414406_57414679_57416514
transcript_19094.nnic	chr12	-	868	2	Antisense	novelGene_ENSMUSG00000035933.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGGCTTTAAACTCCTGC	NA	False	NA	NA	False	AATAAA	-21	NA	31876135	31873381	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr12_-_31873929_31875814
transcript_1910.nic	chr1	-	1024	3	ISM	ENSMUSG00000097519.3	ENSMUST00000181949.3	2052	4	-38	2968	-38	-2968	5prime_fragment	FALSE	canonical	3	59	junction_2	8.5	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTATGGCTACACAATGCT	NA	False	NA	NA	False	NA	NA	NA	57416741	57401348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_57401923_57414406_57414679_57416563
transcript_19100.known	chr12	-	3142	11	FSM	ENSMUSG00000002996.18	ENSMUST00000172314.9	3142	11	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_10	30.1004983347452	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAACCCTGACTTCATTT	NA	False	NA	NA	False	AGTAAA	-10	NA	32000534	31976252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_31977507_31978582_31978725_31980680_31981005_31983355_31983501_31984283_31984441_31986970_31987084_31987168_31987281_31987616_31987759_31990276_31990506_31993827_31994012_32000194
transcript_19104.known	chr12	-	2733	9	FSM	ENSMUSG00000002996.18	ENSMUST00000167458.9	2733	9	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_8	33.3164280048147	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGCGCTTTCTCTACAT	NA	False	NA	NA	False	AATAAA	-42	NA	32000222	31979381	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_31981005_31983355_31983501_31984283_31984441_31986970_31987084_31987168_31987281_31987616_31987759_31990276_31990506_31993827_31994012_32000194
transcript_1911.nic	chr1	-	973	3	ISM	ENSMUSG00000097519.3	ENSMUST00000181949.3	2052	4	-38	3019	-38	-3019	5prime_fragment	FALSE	canonical	3	59	junction_2	8.5	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAATTATAATTTCAACTT	NA	False	NA	NA	False	NA	NA	NA	57416741	57401399	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_57401923_57414406_57414679_57416563
transcript_19112.known	chr12	-	979	3	FSM	ENSMUSG00000002996.18	ENSMUST00000175666.2	979	3	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_2	45	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACTGTAGATTGTTTCAT	NA	False	NA	NA	False	ATTAAA	-21	NA	32000233	31989749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_31990506_31993827_31994012_32000194
transcript_19113.known	chr12	-	1319	6	FSM	ENSMUSG00000002996.18	ENSMUST00000176103.8	1319	6	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_5	35.2669817251207	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAAATACCAATTGAAAAT	NA	False	NA	NA	False	NA	NA	NA	32000220	31986457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_31987084_31987168_31987281_31987616_31987759_31990276_31990506_31993827_31994012_32000194
transcript_19116.known	chr12	+	4527	11	FSM	ENSMUSG00000020572.9	ENSMUST00000020886.9	4527	11	0	0	0	0	multi-exon	FALSE	canonical	3	823	junction_5	70.9532240282286	260	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTGTTAGTGAAATGTTA	NA	False	NA	-7	True	AATAAA	-18	NA	32870333	32903348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_32870626_32880165_32880323_32883030_32883135_32884900_32885030_32888297_32888457_32889149_32889287_32890923_32891150_32892683_32892804_32896704_32896846_32898615_32898751_32900421
transcript_19124.known	chr12	+	4999	6	FSM	ENSMUSG00000020570.16	ENSMUST00000076698.13	4999	6	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	113.462592954683	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACTTTTTTAAAAATGG	8132	False	NA	NA	False	NA	NA	NA	33003889	33029859	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_33004018_33004286_33004359_33015371_33015500_33017534_33017743_33024126_33024319_33025588
transcript_1913.nic	chr1	-	742	3	ISM	ENSMUSG00000097519.3	ENSMUST00000181949.3	2052	4	-38	3250	-38	-3250	5prime_fragment	FALSE	canonical	3	59	junction_2	8.5	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGAGTTTGCTATCTGGC	NA	False	NA	NA	False	NA	NA	NA	57416741	57401630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_57401923_57414406_57414679_57416563
transcript_19131.known	chr12	+	2019	5	FSM	ENSMUSG00000020570.16	ENSMUST00000020885.13	2019	5	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_3	20.9806458432528	621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAAGAATGCCCCGTT	8425	False	NA	NA	False	AATAAA	-7	NA	33004182	33026903	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_33004359_33015371_33015500_33017534_33017743_33024126_33024319_33025588
transcript_19136.known	chr12	+	1675	4	FSM	ENSMUSG00000020564.18	ENSMUST00000110824.9	1675	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	2.35702260395516	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGCCTGTACATTGAGT	NA	False	NA	NA	False	NA	NA	NA	33197709	33301145	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_33197915_33198431_33198501_33267710_33267816_33299849
transcript_19138.known	chr12	+	673	4	FSM	ENSMUSG00000020562.8	ENSMUST00000020878.8	673	4	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	13.0213499897497	396	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCATGTGTCTGGTTTCA	NA	False	NA	4	True	AATAAA	-14	NA	33444852	33451266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_33445198_33448277_33448443_33448546_33448635_33451191
transcript_19149.known	chr12	+	4325	4	FSM	ENSMUSG00000020561.9	ENSMUST00000020877.9	4325	4	0	0	0	0	multi-exon	FALSE	canonical	3	454	junction_3	49.8687165354081	875	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTCTTGTACAGCGACAT	NA	False	NA	NA	False	AATAAA	-37	NA	33479633	33491391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_33479908_33483503_33483646_33486934_33487144_33487691
transcript_1915.nic	chr1	-	616	3	ISM	ENSMUSG00000097519.3	ENSMUST00000181949.3	2052	4	-38	3376	-38	-3376	5prime_fragment	FALSE	canonical	3	59	junction_2	8.5	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGATGCTTTTGAAGAC	NA	False	NA	NA	False	NA	NA	NA	57416741	57401756	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_57401923_57414406_57414679_57416563
transcript_19163.known	chr12	+	1628	2	FSM	ENSMUSG00000035799.7	ENSMUST00000049089.7	1628	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTAAAGTTTGGTCTAT	NA	False	NA	NA	False	AATAAA	-25	NA	34007669	34009828	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_34008638_34009168
transcript_19165.known	chr12	+	1145	7	FSM	ENSMUSG00000020590.17	ENSMUST00000222101.2	1145	7	0	0	0	0	multi-exon	TRUE	canonical	3	96	junction_3	5.7373048260195	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATACTGTTTAATTTATTT	NA	False	NA	NA	False	AATAAA	-15	NA	35097215	35141967	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_35097411_35128898_35129012_35132867_35132971_35135937_35136028_35136861_35136984_35141361_35141484_35141567
transcript_19166.known	chr12	-	393	1	FSM	ENSMUSG00000114058.2	ENSMUST00000221103.2	393	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGATGTAAAGCATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	35811776	35811383	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_35811400_35811800
transcript_19167.known	chr12	+	784	8	FSM	ENSMUSG00000020581.12	ENSMUST00000020898.12	784	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.989743318610787	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTTGTTTCTATTGGTT	NA	False	NA	NA	False	AATAAA	-24	NA	36042905	36054086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_36042969_36045508_36045655_36045893_36045958_36046073_36046127_36047421_36047496_36048581_36048646_36051684_36051769_36053850
transcript_19168.known	chr12	-	1932	6	FSM	ENSMUSG00000020577.18	ENSMUST00000020896.17	1932	6	0	0	0	0	multi-exon	FALSE	canonical	3	804	junction_3	64.3913037606787	715	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATGGGTGTTTAAATCAA	NA	False	NA	-4	True	AATAAA	-20	NA	36092488	36064555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_36065772_36070488_36070603_36071799_36071914_36072751_36072833_36073903_36074072_36092249
transcript_1917.known	chr1	+	3008	2	FSM	ENSMUSG00000038323.4	ENSMUST00000042734.3	3008	2	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTATTTGGATGTGTTTAT	NA	False	NA	8	True	ATTAAA	-19	NA	57416778	57424582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_57417106_57421901
transcript_19178.known	chr12	+	2456	10	FSM	ENSMUSG00000036188.5	ENSMUST00000041640.5	2456	10	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_5	20.5882622678524	291	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTTGTTTCATAATTCGT	NA	False	NA	21	True	AATAAA	-20	NA	36207112	36247290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_36207423_36215868_36215934_36220447_36220587_36226578_36226678_36232346_36232508_36236724_36236940_36237648_36237785_36243668_36243798_36244982_36245113_36246218
transcript_19185.known	chr12	-	1871	12	FSM	ENSMUSG00000020547.6	ENSMUST00000020856.6	1871	12	0	0	0	0	multi-exon	FALSE	canonical	3	931	junction_9	81.950499068161	1700	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATATGGTCAGAGCGTGT	NA	False	NA	-11	True	AATAAA	-21	NA	36206824	36141833	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_36142309_36142965_36143089_36154260_36154400_36157494_36157642_36159703_36159875_36163966_36164077_36168985_36169122_36170717_36170784_36173933_36174038_36179990_36180168_36184889_36184955_36206666
transcript_19186.known	chr12	-	2533	11	FSM	ENSMUSG00000020547.6	ENSMUST00000221521.2	2533	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	319.117157169589	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGGATCCTGTAGCAGCG	NA	False	NA	NA	False	NA	NA	NA	36206765	36149423	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_36150743_36154260_36154400_36157494_36157642_36159703_36159875_36163966_36164077_36168985_36169122_36170717_36170784_36173933_36174038_36179990_36180168_36184889_36184955_36206666
transcript_19187.known	chr12	-	1567	4	FSM	ENSMUSG00000020547.6	ENSMUST00000222842.2	1567	4	0	0	0	0	multi-exon	FALSE	canonical	3	931	junction_1	59.7345982008938	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTAGTGAATTTTAAGGCC	NA	False	NA	NA	False	TTTAAA	-13	NA	36206720	36172766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_36174038_36179990_36180168_36184889_36184955_36206666
transcript_19188.known	chr12	+	2690	10	FSM	ENSMUSG00000043153.7	ENSMUST00000062041.6	2690	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_5	4.59468291736341	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATGTCTCCTACAACAT	NA	False	NA	NA	False	AATAAA	-14	NA	36431517	36739443	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_36432024_36440344_36440622_36476287_36476438_36523100_36523206_36526698_36526745_36551976_36552072_36571431_36571522_36571957_36572051_36597827_36597960_36738247
transcript_19190.known	chr12	+	1456	10	FSM	ENSMUSG00000043153.7	ENSMUST00000221177.2	1456	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6.51494009523069	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTAAAGAATCTGTTCACT	NA	False	NA	NA	False	AATAAA	-18	NA	36432178	36738591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_36432303_36440344_36440622_36476287_36476438_36523100_36523206_36526698_36526745_36551976_36552072_36571431_36571522_36571957_36572051_36597827_36597960_36738247
transcript_19196.known	chr12	+	6576	13	FSM	ENSMUSG00000004151.18	ENSMUST00000095767.11	6576	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_8	7.23225798458238	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGGTTGTCGTGATCACT	325	False	NA	NA	False	AATAAA	-19	NA	38830080	38920483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_38830421_38830846_38830979_38831797_38831886_38833236_38833285_38843169_38843224_38877776_38877907_38881079_38881269_38885067_38885316_38902218_38902288_38904158_38904228_38906939_38907110_38911285_38911388_38915546
transcript_19197.known	chr12	-	1200	2	FSM	ENSMUSG00000047446.19	ENSMUST00000101472.4	1200	2	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_1	0	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCCTAGTGTTTTGTGCT	NA	False	NA	-7	True	AATAAA	-15	NA	40088024	40085820	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_40086833_40087836
transcript_19198.known	chr12	-	3710	2	FSM	ENSMUSG00000047446.19	ENSMUST00000146905.2	3710	2	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	0	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGCGTTAGACTATCAT	NA	False	NA	0	True	AATAAA	-16	NA	40087428	40083289	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_40086833_40087261
transcript_19204.known	chr12	-	3378	12	FSM	ENSMUSG00000001627.13	ENSMUST00000001672.12	3378	12	0	0	0	0	multi-exon	FALSE	canonical	3	551	junction_11	48.4295518005619	791	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTGGGAGGTTTGCTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	40273188	40251565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_40253451_40253917_40254014_40254295_40254425_40256987_40257123_40262308_40262418_40262937_40263117_40263207_40263259_40263976_40264135_40266188_40266314_40267156_40267242_40267376_40267482_40272867
transcript_19209.known	chr12	+	1366	2	FSM	ENSMUSG00000035983.5	ENSMUST00000038121.5	1366	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGCTCGCAATTTATG	NA	False	NA	NA	False	AATAAA	-9	NA	40272756	40275237	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_40273553_40274667
transcript_19212.known	chr12	-	2438	13	FSM	ENSMUSG00000055917.16	ENSMUST00000069692.10	2438	13	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_11	159.233493824495	236	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACCATTTTTACTTCTTC	NA	False	NA	NA	False	NA	NA	NA	40495773	40365044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_40365903_40367089_40367265_40368533_40368577_40370600_40370698_40372528_40372597_40378673_40378807_40379483_40379595_40385282_40385375_40413132_40413216_40414080_40414170_40428671_40428874_40460574_40460953_40495664
transcript_19223.known	chr12	+	347	4	FSM	ENSMUSG00000056899.11	ENSMUST00000140790.2	347	4	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_1	32.8667342798493	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTACTGTATTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	41074125	41160956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_41074145_41074559_41074633_41118308_41118446_41160838
transcript_19224.known	chr12	+	669	3	FSM	ENSMUSG00000056899.11	ENSMUST00000153184.8	669	3	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_1	38	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATAGCCCAGGCAACACAA	NA	False	NA	NA	False	NA	NA	NA	41074124	41118884	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_41074145_41074559_41074633_41118308
transcript_19226.known	chr12	+	1147	7	FSM	ENSMUSG00000056899.11	ENSMUST00000132121.8	1147	7	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_1	24.8310960960916	969	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTTGTTTGGGTGTTTAA	NA	False	NA	NA	False	AATAAA	-16	NA	41074088	42002371	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_41074145_41074559_41074633_41118308_41118446_41160838_41160943_41675546_41675613_41750437_41750541_42001763
transcript_19227.known	chr12	+	977	6	FSM	ENSMUSG00000056899.11	ENSMUST00000134965.8	977	6	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_5	15.5897402159241	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGATTGTGTGTTGTATT	NA	False	NA	NA	False	ATTAAA	-15	NA	41074327	42002025	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_41074633_41118308_41118446_41160838_41160943_41675546_41675613_41750437_41750541_42001763
transcript_19229.known	chr12	-	2461	3	FSM	ENSMUSG00000014905.5	ENSMUST00000015049.5	2461	3	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_1	7	213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGACGTGCTTGGAATGAT	NA	False	NA	NA	False	AATAAA	-16	NA	44257109	44252341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_44254189_44254869_44255097_44256722
transcript_1923.known	chr1	-	766	9	FSM	ENSMUSG00000048495.17	ENSMUST00000160837.8	766	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	49.931828526502	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACAGATACCTATGGCAAC	NA	False	NA	NA	False	NA	NA	NA	57445602	57427824	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_57427912_57429800_57429918_57430607_57430696_57432508_57432647_57432828_57432854_57433205_57433251_57435885_57435956_57440546_57440683_57445542
transcript_19232.known	chr12	+	13507	10	FSM	ENSMUSG00000036257.16	ENSMUST00000043082.16	13507	10	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_3	27.4419701988589	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTGCTCCCTGAAGCCATA	NA	False	NA	NA	False	NA	NA	NA	44315930	44369315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_44316085_44329360_44330488_44330575_44330726_44334953_44335106_44337348_44337444_44342680_44342853_44346016_44346075_44351693_44351889_44354701_44354898_44358107
transcript_19240.known	chr12	-	4553	6	FSM	ENSMUSG00000046314.17	ENSMUST00000053768.14	4553	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	7.73563184232549	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTTTCTCTCCTTTAT	NA	False	NA	NA	False	ATTAAA	-21	NA	45121492	44899266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_44902661_44908007_44908166_44948656_44948823_44949642_44949774_45066249_45066439_45120977
transcript_19244.known	chr12	+	345	1	FSM	ENSMUSG00000112908.2	ENSMUST00000217815.2	345	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	376	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGAGGCCGTTTTGTAAG	NA	False	NA	NA	False	NA	NA	NA	47859687	47860032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_47859700_47860000
transcript_19248.known	chr12	+	2926	16	FSM	ENSMUSG00000035293.14	ENSMUST00000119211.8	2926	16	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_11	51.696120636745	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCATCTCATAAATCAGAGAT	NA	False	NA	NA	False	AATAAA	-18	NA	51395070	51420050	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_51395228_51398187_51398229_51400386_51400485_51400582_51400685_51402663_51402789_51403809_51403976_51406524_51406632_51407713_51407831_51409968_51410094_51410199_51410330_51410734_51410804_51412037_51412343_51414557_51414740_51415828_51416002_51418342_51418534_51419212
transcript_19249.known	chr12	+	6803	15	FSM	ENSMUSG00000035293.14	ENSMUST00000054308.13	6803	15	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_10	21.5917595770389	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGATGTGAGATTTATTTCA	NA	False	NA	17	True	AATAAA	-18	NA	51394843	51423769	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_51395228_51398187_51398229_51400386_51400485_51400582_51400685_51402663_51402789_51403809_51403976_51406524_51406632_51407713_51407831_51409968_51410094_51410199_51410330_51412037_51412343_51414557_51414740_51415828_51416002_51418342_51418534_51419212
transcript_19256.nic	chr12	+	1263	9	ISM	ENSMUSG00000035293.14	ENSMUST00000119211.8	2926	16	-180	9912	47	-178	5prime_fragment	FALSE	canonical	3	119	junction_8	18.4657622371783	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTTGAAAATGTTTTGC	NA	False	NA	NA	False	AATAAA	-21	NA	51394890	51410138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_51395228_51398187_51398229_51400386_51400485_51400582_51400685_51402663_51402789_51403809_51403976_51406524_51406632_51407713_51407831_51409968
transcript_19260.known	chr12	+	2096	25	FSM	ENSMUSG00000020952.11	ENSMUST00000021335.7	2096	25	0	0	0	0	multi-exon	FALSE	canonical	3	358	junction_5	42.0133700610757	1058	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTTATTCTTGTTTGAA	NA	False	NA	15	True	AATAAA	-15	NA	51424362	51496884	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_51424420_51430887_51430959_51433832_51433922_51436064_51436156_51437088_51437212_51438965_51439054_51440603_51440694_51443462_51443519_51444475_51444562_51446781_51446882_51459286_51459427_51460877_51460969_51461632_51461707_51462297_51462380_51469689_51469787_51472820_51472892_51474647_51474728_51478270_51478334_51480013_51480090_51486065_51486120_51489313_51489367_51491766_51491801_51492453_51492520_51494354_51494424_51496689
transcript_19261.known	chr12	+	2749	14	FSM	ENSMUSG00000020952.11	ENSMUST00000219434.2	2749	14	0	0	0	0	multi-exon	TRUE	canonical	3	21	junction_13	120.151925523899	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAACATTTTTTAAGATT	NA	False	NA	NA	False	ATTAAA	-15	NA	51424362	51463998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_51424420_51430887_51430959_51433832_51433922_51436064_51436156_51437088_51437212_51438965_51439054_51440603_51440694_51443462_51443519_51444475_51444562_51446781_51446882_51459286_51459427_51460877_51460969_51461632_51461707_51462405
transcript_19262.known	chr12	+	2456	12	FSM	ENSMUSG00000020953.18	ENSMUST00000085412.7	2456	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	2.34608870919344	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCTATTTATTAACACTAG	NA	False	NA	NA	False	AATAAA	-17	NA	51640139	51652544	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_51640189_51640387_51640441_51640520_51640575_51642117_51642275_51643226_51643361_51643797_51643861_51644810_51644856_51644934_51645083_51648596_51648701_51649429_51649657_51649978_51650496_51651639
transcript_19266.known	chr12	-	8988	43	FSM	ENSMUSG00000035247.17	ENSMUST00000042052.9	8988	43	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_19	32.7528018915334	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAACCTGTGTCGTGTTAC	NA	False	NA	-5	True	ATTAAA	-14	NA	51876319	51790504	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_51791442_51791548_51791694_51792163_51792315_51792876_51792971_51793055_51793135_51795186_51795795_51797103_51797242_51798638_51798841_51800523_51800652_51800825_51800912_51800997_51801206_51801703_51801887_51803829_51803885_51806001_51806225_51807796_51807954_51809206_51809330_51810803_51810938_51814338_51814561_51815311_51816149_51819056_51819234_51819321_51819489_51820609_51820934_51821433_51821574_51823278_51823414_51829264_51829371_51830964_51831060_51832591_51832739_51834627_51834763_51836954_51837032_51837134_51837399_51838002_51838226_51841196_51841368_51841521_51841661_51844619_51844795_51845436_51845552_51847497_51847597_51847678_51847756_51848946_51849218_51849317_51849600_51850451_51850680_51853144_51853380_51874134_51874297_51875985
transcript_19268.nnic	chr12	+	847	6	NNC	ENSMUSG00000020955.10	novel	757	6	NA	NA	-141	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	27.8826110685495	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGTGACGTTTGAGTGAA	NA	False	NA	NA	False	AATAAA	-17	NA	51737674	51785715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_51737765_51763724_51763934_51767418_51767506_51769762_51769832_51777670_51777683_51785335
transcript_1927.known	chr1	-	1847	8	FSM	ENSMUSG00000048495.17	ENSMUST00000162686.8	1847	8	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_6	29.7341966257639	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGGTGGAGTGGCCGTCT	NA	False	NA	-15	True	AATAAA	-30	NA	57446260	57427395	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_57427912_57429800_57429918_57430607_57430696_57432508_57432647_57433205_57433251_57435885_57435956_57440527_57440683_57445542
transcript_19270.known	chr12	+	1035	6	FSM	ENSMUSG00000020955.10	ENSMUST00000021338.10	1035	6	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	14.8458748479165	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGTGACGTTTGAGTGAA	NA	False	NA	NA	False	AATAAA	-17	NA	51737819	51785715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_51738098_51763724_51763934_51767418_51767506_51769762_51769832_51777670_51777683_51785335
transcript_19278.nic	chr12	-	1998	11	ISM	ENSMUSG00000035181.7	ENSMUST00000218254.2	4111	13	-54	9264	-30	-3110	5prime_fragment	FALSE	canonical	1	15	junction_10	12.1363091588835	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGCTGTTAGTGTGTATC	9969	False	NA	NA	False	AATGAA	-24	NA	52018134	51992145	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_-_51992316_51994537_51994789_51996714_51996871_51997711_51997968_51999269_51999428_52002162_52002338_52002903_52003054_52003861_52003971_52005635_52005848_52008215_52008428_52017985
transcript_1928.known	chr1	-	1398	8	FSM	ENSMUSG00000048495.17	ENSMUST00000079998.13	1398	8	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_6	15.7025930524684	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTATTGGTGGAGTGGCCG	NA	False	NA	-18	True	AATAAA	-43	NA	57445833	57427398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_57427912_57429800_57429918_57430607_57430696_57432508_57432647_57433205_57433251_57435885_57435956_57440546_57440683_57445542
transcript_19281.known	chr12	-	7763	36	FSM	ENSMUSG00000035181.7	ENSMUST00000040583.7	7763	36	0	0	0	0	multi-exon	FALSE	canonical	1	15	junction_35	10.655036176305	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTTGTATTTTGAAGTG	9999	False	NA	0	True	AATAAA	-16	NA	52018104	51922653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_51924400_51926037_51926252_51927896_51928049_51931049_51931275_51934780_51935054_51935636_51935785_51936369_51936498_51938004_51938251_51940432_51940656_51941045_51941226_51943345_51943415_51944529_51944712_51945837_51946075_51952103_51952284_51956740_51956877_51961756_51961927_51962849_51963040_51965366_51965524_51967172_51967361_51968120_51968227_51971780_51971957_51972036_51972201_51976973_51977084_51984853_51984954_51986353_51986507_51992203_51992316_51994537_51994789_51996714_51996871_51997711_51997968_51999269_51999428_52002162_52002338_52002903_52003054_52003861_52003971_52005635_52005848_52008215_52008428_52017985
transcript_19287.known	chr12	-	2564	3	FSM	ENSMUSG00000020956.15	ENSMUST00000021339.8	2564	3	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_1	5	743	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATACTACAGCACTCTATG	NA	False	NA	NA	False	AATAAA	-21	NA	52053284	52044289	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_52046657_52051661_52051732_52053157
transcript_19292.known	chr12	+	2987	11	FSM	ENSMUSG00000035142.19	ENSMUST00000040090.16	2987	11	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_4	16.265300489078	869	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGGATATCAATATACTTC	NA	False	NA	NA	False	NA	NA	NA	52144519	52359527	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_52144675_52145135_52145284_52147249_52147285_52190751_52190843_52227874_52227915_52227999_52228091_52317821_52317916_52333120_52333207_52349463_52349585_52352580_52352664_52357484
transcript_19301.known	chr12	+	896	3	FSM	ENSMUSG00000035142.19	ENSMUST00000159485.2	896	3	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_1	12.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGTATGTATTTGTTCA	NA	False	NA	NA	False	NA	NA	NA	52144543	52147866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_52144675_52145135_52145284_52147249
transcript_19303.known	chr12	+	1308	5	FSM	ENSMUSG00000035142.19	ENSMUST00000159708.8	1308	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	123.067816670322	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGCAT	NA	False	NA	NA	False	NA	NA	NA	52144538	52191563	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_52144675_52145135_52145284_52147249_52147285_52152001_52152179_52190751
transcript_19304.nnic	chr12	+	1251	2	NNC	ENSMUSG00000035133.10	novel	9323	7	NA	NA	-5	-28392	at_least_one_novel_splicesite	FALSE	canonical	3	119	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAGAGAAGAATATATAAGT	NA	False	NA	NA	False	AAGAAA	-3	NA	52550749	52564030	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_52550832_52562861
transcript_19305.known	chr12	+	9323	7	FSM	ENSMUSG00000035133.10	ENSMUST00000219443.2	9323	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	120.718681238655	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCCAAGTCTTTTTAATT	NA	False	NA	NA	False	AATACA	-12	NA	52550798	52618758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_52550832_52562889_52566751_52589271_52589420_52604271_52604350_52606750_52606883_52609104_52609211_52613793
transcript_19306.known	chr12	-	2662	5	FSM	ENSMUSG00000035105.6	ENSMUST00000039516.4	2662	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	5.24404424085076	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTTTGGTTCATTTCCAT	NA	False	NA	NA	False	NA	NA	NA	54250646	54225766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_54227442_54228416_54228491_54230665_54230803_54232326_54232447_54249990
transcript_19310.known	chr12	-	384	2	FSM	ENSMUSG00000112705.2	ENSMUST00000217997.2	384	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCTGGGGCTCGGCTCAC	5529	False	NA	NA	False	NA	NA	NA	54363801	54362949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_54363234_54363701
transcript_19315.known	chr12	-	632	2	FSM	ENSMUSG00000044408.8	ENSMUST00000220090.2	632	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGGGACGGGAGGGAGGA	NA	False	NA	NA	False	AATACA	-4	NA	54702983	54692748	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_54693321_54702923
transcript_19316.known	chr12	-	1346	2	FSM	ENSMUSG00000044408.8	ENSMUST00000056228.8	1346	2	0	0	0	0	multi-exon	FALSE	canonical	3	293	junction_1	0	2077	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTCTCTTTTATGGTTAA	NA	False	NA	NA	False	ATTAAA	-17	NA	54703358	54692176	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_54693321_54703156
transcript_19317.known	chr12	-	2658	7	FSM	ENSMUSG00000054302.16	ENSMUST00000163433.8	2658	7	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	149.586559853781	457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACATAAAATAAAATAAAATA	NA	False	NA	NA	False	NA	NA	NA	54742669	54718439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_54718648_54718863_54720636_54725294_54725409_54732644_54732757_54738784_54738881_54739559_54739742_54742495
transcript_19323.known	chr12	-	4186	6	FSM	ENSMUSG00000054302.16	ENSMUST00000161592.8	4186	6	0	0	0	0	multi-exon	FALSE	canonical	3	353	junction_3	29.9973332148043	560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATTAAGTCCTTTATTTG	NA	False	NA	NA	False	ATTAAA	-5	NA	54742666	54717124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_54720636_54725294_54725409_54732644_54732757_54738784_54738881_54739559_54739742_54742495
transcript_19326.known	chr12	-	886	5	FSM	ENSMUSG00000054302.16	ENSMUST00000110713.10	886	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	171.146136386423	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGGAGTGGTTATCAAC	NA	False	NA	-5	True	ATTAAA	-19	NA	54742606	54720250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_54720636_54732644_54732757_54738784_54738881_54739559_54739742_54742495
transcript_19333.known	chr12	-	590	3	FSM	ENSMUSG00000054302.16	ENSMUST00000067272.9	590	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	216.5	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATGAAAAGGAGTGGTTA	NA	False	NA	-10	True	ATTAAA	-14	NA	54742682	54720255	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_54720576_54739658_54739742_54742495
transcript_19334.nic	chr12	-	468	3	ISM	ENSMUSG00000054302.16	ENSMUST00000160085.2	676	4	-38	1889	-3	-1889	5prime_fragment	FALSE	canonical	3	393	junction_1	26	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTAGCATTTAGCTTAG	NA	False	NA	NA	False	AAAACA	-2	NA	54742685	54738784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_-_54738881_54739559_54739742_54742495
transcript_19335.known	chr12	+	164	1	FSM	ENSMUSG00000119895.1	ENSMUST00000240065.1	164	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATTTTTGTTGAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	54743566	54743730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_54743600_54743700
transcript_19336.known	chr12	-	164	1	FSM	ENSMUSG00000118864.1	ENSMUST00001239507.1	164	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTCTGTGGTTGCAAAGT	NA	False	NA	NA	False	NA	NA	NA	54766104	54765940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_54765900_54766100
transcript_19337.known	chr12	-	164	1	FSM	ENSMUSG00000119670.1	ENSMUST00000240177.1	164	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTGTTGGTGCAAAAGCA	NA	False	NA	NA	False	NA	NA	NA	54781496	54781332	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_54781300_54781500
transcript_19338.known	chr12	-	164	1	FSM	ENSMUSG00000119206.1	ENSMUST00000179675.3	164	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGCTGTGGTACTTAAGA	NA	False	NA	NA	False	NA	NA	NA	54785404	54785240	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_54785200_54785400
transcript_19341.known	chr12	-	1928	14	FSM	ENSMUSG00000005656.10	ENSMUST00000005798.9	1928	14	0	0	0	0	multi-exon	FALSE	canonical	3	824	junction_2	126.191832929968	2597	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACAGTGAAGGTCTTTTCT	NA	False	NA	-10	True	AATAAA	-20	NA	54842488	54793133	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_54793845_54798566_54798653_54798725_54798886_54801074_54801162_54803820_54803861_54807183_54807260_54810404_54810511_54812368_54812465_54814803_54814928_54817503_54817626_54830187_54830299_54830799_54830905_54842238_54842287_54842432
transcript_19342.known	chr12	-	286	2	FSM	ENSMUSG00000005656.10	ENSMUST00000219722.2	286	2	0	0	0	0	multi-exon	FALSE	canonical	3	1087	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAATAAAAATT	NA	False	NA	-32	True	NA	NA	NA	54807268	54803659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_54803861_54807183
transcript_19343.known	chr12	+	507	2	FSM	ENSMUSG00000113209.2	ENSMUST00000220682.2	507	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGAAAAGGGCCTGACACA	NA	False	NA	NA	False	AATAAA	-14	NA	54909775	54910449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_54909895_54910061
transcript_19344.known	chr12	-	2940	4	FSM	ENSMUSG00000062929.9	ENSMUST00000078124.8	2940	4	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_2	55.9603033904888	496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTAAAGCTGTTGAGATG	NA	False	NA	-11	True	AATAAA	-12	NA	54909662	54905601	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_54908023_54908121_54908199_54908310_54908619_54909528
transcript_19345.known	chr12	-	2726	4	FSM	ENSMUSG00000062929.9	ENSMUST00000223450.2	2726	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	134.037308239162	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGAGATGTGTTTACT	NA	False	NA	-3	True	AATAAA	-20	NA	54909583	54905593	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_54908023_54908121_54908199_54908453_54908619_54909528
transcript_19346.known	chr12	-	1128	4	FSM	ENSMUSG00000062929.9	ENSMUST00000221374.2	1128	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	123.758725842755	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAATGTTGCCTTGTTTTC	NA	False	NA	NA	False	AATAAA	-16	NA	54909583	54907080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_54908023_54908121_54908199_54908564_54908619_54909528
transcript_19348.nic	chr12	-	1198	9	ISM	ENSMUSG00000035021.14	ENSMUST00000173433.8	5788	27	279	41215	108	5593	5prime_fragment	TRUE	canonical	3	19	junction_8	7.69638713943107	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAGACTTAAAATAGAAAGA	NA	False	NA	NA	False	AAAAAG	-10	NA	55033013	54981550	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_-_54981692_54982266_54982367_54988286_54988422_54990761_54990850_54993586_54993689_55001482_55001627_55021888_55022168_55032450_55032593_55032946
transcript_1935.known	chr1	-	1754	7	FSM	ENSMUSG00000048495.17	ENSMUST00000097732.11	1754	7	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_5	15.6178316890235	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTATTGGTGGAGTGGCCG	NA	False	NA	-18	True	AATAAA	-43	NA	57445630	57427398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_57427912_57429800_57429918_57430607_57430696_57432508_57433251_57435885_57435956_57440546_57440683_57445542
transcript_19353.nic	chr12	-	1533	8	NIC	ENSMUSG00000062198.6	novel	1105	8	NA	NA	-361	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_4	59.7586984531652	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATCTGAAATGTTTTGTT	NA	False	NA	-14	True	AATAAA	-25	NA	55127256	55092460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_-_55092729_55095671_55095763_55100085_55100193_55104026_55104138_55106159_55106364_55107839_55107979_55109772_55109895_55126765
transcript_19355.known	chr12	-	1105	8	FSM	ENSMUSG00000062198.6	ENSMUST00000021406.6	1105	8	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_4	27.3898536256157	526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTGCTCTTTTATTTGT	NA	False	NA	1	True	AATAAA	-40	NA	55126895	55092445	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_55092729_55095671_55095763_55100085_55100193_55104026_55104138_55106241_55106364_55107839_55107979_55109772_55109895_55126765
transcript_19357.nnic	chr12	-	1444	8	Fusion	ENSMUSG00000112022.3_ENSMUSG00000062198.6	novel	1105	8	NA	NA	-409	0	multi-exon	FALSE	canonical	3	143	junction_4	24.4423520027957	271	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATCTGAAATGTTTTGTT	NA	False	NA	-14	True	AATAAA	-25	NA	55202090	55092460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr12_-_55092729_55095671_55095763_55100085_55100193_55104026_55104138_55106241_55106364_55107839_55107979_55109772_55109895_55201606
transcript_19363.nnic	chr12	-	1190	6	NIC	ENSMUSG00000062198.6	novel	1105	8	NA	NA	-361	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_4	82.0243866176395	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATCTGAAATGTTTTGTT	NA	False	NA	-14	True	AATAAA	-25	NA	55127256	55092460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_-_55092729_55095671_55095763_55100085_55100193_55104026_55104138_55109772_55109895_55126765
transcript_19365.nnic	chr12	-	852	6	Fusion	ENSMUSG00000112022.3_ENSMUSG00000062198.6	novel	1105	8	NA	NA	-78	0	multi-exon	FALSE	canonical	3	8	junction_4	79.6552572025224	61	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATCTGAAATGTTTTGTT	NA	False	NA	-14	True	AATAAA	-25	NA	55201759	55092460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr12_-_55092729_55095671_55095763_55100085_55100193_55104026_55104138_55109772_55109895_55201606
transcript_19366.nnic	chr12	-	1079	5	NIC	ENSMUSG00000062198.6	novel	1105	8	NA	NA	-361	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_3	91.499658469308	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATCTGAAATGTTTTGTT	NA	False	NA	-14	True	AATAAA	-25	NA	55127256	55092460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_-_55092729_55095671_55095763_55100085_55100193_55109772_55109895_55126765
transcript_19367.nnic	chr12	-	1072	5	Fusion	ENSMUSG00000112022.3_ENSMUSG00000062198.6	novel	1105	8	NA	NA	-409	0	multi-exon	FALSE	canonical	2	8	junction_3	88.6721489533213	68	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATCTGAAATGTTTTGTT	NA	False	NA	-14	True	AATAAA	-25	NA	55202090	55092460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr12_-_55092729_55095671_55095763_55100085_55100193_55109772_55109895_55201606
transcript_19370.known	chr12	-	4110	5	FSM	ENSMUSG00000062198.6	ENSMUST00000156852.2	4110	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_1	29.9864552756741	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAAAAGAAATTAACTA	NA	False	NA	NA	False	NA	NA	NA	55126893	55100538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_55104138_55106241_55106364_55107839_55107979_55109772_55109895_55126765
transcript_19372.nic	chr12	-	2045	5	ISM	ENSMUSG00000062198.6	ENSMUST00000222572.2	798	6	-367	2954	-361	-2510	5prime_fragment	FALSE	canonical	3	37	junction_1	70.9449610613749	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGTAG	NA	False	NA	NA	False	NA	NA	NA	55127256	55103048	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_-_55104138_55106159_55106364_55107839_55107979_55109772_55109895_55126765
transcript_19385.known	chr12	+	4498	16	FSM	ENSMUSG00000073079.7	ENSMUST00000220578.2	4498	16	0	0	0	0	multi-exon	FALSE	canonical	3	524	junction_1	133.408578767967	916	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCTGGATGAAAGTCATGT	2576	False	NA	NA	False	NA	NA	NA	55127046	55162152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_55127522_55135954_55136065_55136920_55137013_55138033_55138119_55142599_55142705_55143893_55143961_55144040_55144099_55146697_55146849_55148124_55148274_55148607_55148709_55149252_55149340_55151975_55152050_55152401_55152511_55155286_55155458_55157870_55157967_55159584
transcript_19398.nic	chr12	+	1023	5	NIC	ENSMUSG00000073079.7	novel	428	4	NA	NA	-66	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_4	341.194226211406	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTCTGTGTGTCTGTGTC	2510	False	NA	NA	False	AATAAA	-22	NA	55126980	55138686	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_55127522_55135954_55136065_55136920_55137013_55138033_55138119_55138491
transcript_19399.known	chr12	+	1026	4	FSM	ENSMUSG00000073079.7	ENSMUST00000221479.2	1026	4	0	0	0	0	multi-exon	FALSE	canonical	3	524	junction_1	150.738183616494	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATATTTCTGTGTGTC	2874	False	NA	NA	False	AATAAA	-16	NA	55127344	55138680	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_55127522_55135954_55136065_55136920_55137013_55138033
transcript_1940.known	chr1	+	3540	5	FSM	ENSMUSG00000025971.7	ENSMUST00000027114.6	3540	5	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_4	18.5926732881531	1937	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTTGGGTCATGGTGTTC	NA	False	NA	NA	False	NA	NA	NA	57445486	57457112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_57446382_57449070_57449143_57450881_57451009_57452398_57452547_57454814
transcript_19402.known	chr12	+	3922	5	FSM	ENSMUSG00000095595.3	ENSMUST00000177768.3	3922	5	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_4	12.794041581924	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGATCTGCAGAGTTCTC	NA	False	NA	NA	False	NA	NA	NA	55171253	55188889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_55171508_55177400_55177575_55182452_55182520_55183902_55184001_55185560
transcript_19408.nnic	chr12	+	1049	4	NNC	ENSMUSG00000095595.3	novel	3922	5	NA	NA	9101	-2510	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	46.2913478836908	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTGTGGATTTCCTTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	55180354	55186379	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_55180420_55182452_55182520_55183902_55184001_55185560
transcript_19410.nnic	chr12	+	688	3	NIC	ENSMUSG00000095595.3	novel	3922	5	NA	NA	-20	-3089	combination_of_known_splicesites	FALSE	canonical	3	4	junction_2	60	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTCCAATCAGGAGCTTT	NA	False	NA	NA	False	TATAAA	-16	NA	55171233	55185800	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_55171508_55177400_55177575_55185560
transcript_19411.nnic	chr12	+	1267	3	NIC	ENSMUSG00000095595.3	novel	3922	5	NA	NA	-20	-2510	combination_of_known_splicesites	FALSE	canonical	3	4	junction_2	60	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTGTGGATTTCCTTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	55171233	55186379	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_55171508_55177400_55177575_55185560
transcript_19412.known	chr12	-	850	8	FSM	ENSMUSG00000112022.3	ENSMUST00000219562.3	850	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_7	67.4325059384779	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	55201681	55188893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_55189069_55190157_55190218_55192016_55192155_55195887_55196025_55196405_55196482_55196565_55196622_55197660_55197794_55201606
transcript_19414.known	chr12	+	3646	16	FSM	ENSMUSG00000112449.2	ENSMUST00000110708.4	3646	16	0	0	0	0	multi-exon	FALSE	canonical	3	704	junction_7	105.372650889856	769	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCATTCTTAGAAAAGTATT	2354	False	NA	NA	False	NA	NA	NA	55201888	55236358	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_55202366_55211014_55211125_55211980_55212073_55213093_55213179_55217659_55217765_55218953_55219021_55219100_55219159_55221757_55221909_55223184_55223334_55223667_55223769_55224312_55224400_55227035_55227110_55227461_55227571_55230346_55230518_55232930_55233027_55234644
transcript_19423.known	chr12	+	3863	5	FSM	ENSMUSG00000094103.3	ENSMUST00000177978.3	3863	5	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_4	12.794041581924	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGATCTGCAGAGTTCTC	NA	False	NA	NA	False	NA	NA	NA	55246376	55263953	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_55246572_55252464_55252639_55257516_55257584_55258966_55259065_55260624
transcript_19432.nnic	chr12	+	1267	3	NIC	ENSMUSG00000094103.3	novel	3863	5	NA	NA	-82	-2513	combination_of_known_splicesites	FALSE	canonical	3	4	junction_2	60	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCACTGTGGATTTCCTT	NA	False	NA	NA	False	AATAAA	-13	NA	55246294	55261440	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_55246572_55252464_55252639_55260624
transcript_19434.known	chr12	-	847	8	FSM	ENSMUSG00000112690.3	ENSMUST00000220144.3	847	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_7	67.4325059384779	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTTTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	55276745	55263960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_55264133_55265221_55265282_55267080_55267219_55270951_55271089_55271469_55271546_55271629_55271686_55272724_55272858_55276670
transcript_19437.known	chr12	+	3642	16	FSM	ENSMUSG00000079108.7	ENSMUST00000218879.2	3642	16	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_11	270.209005524736	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCATTCTTAGAAAAGTATT	NA	False	NA	NA	False	NA	NA	NA	55276952	55310621	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_55277430_55286078_55286189_55287044_55287137_55288157_55288243_55292723_55292829_55294017_55294085_55294164_55294223_55296788_55296940_55298428_55298578_55298911_55299013_55299556_55299644_55302323_55302398_55302752_55302862_55304209_55304381_55307187_55307284_55308911
transcript_19443.nnic	chr12	+	1015	5	NNC	ENSMUSG00000079108.7	novel	3642	16	NA	NA	-56	-20995	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_4	390.15149301265	50	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTCTGTGTGTCTGTGTC	NA	False	NA	NA	False	AATAAA	-22	NA	55276896	55288810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_55277430_55286078_55286189_55287044_55287137_55288157_55288243_55288615
transcript_1945.known	chr1	-	708	5	FSM	ENSMUSG00000048495.17	ENSMUST00000161780.3	708	5	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_3	19.6468827043885	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCAAAGCCTAGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	57445696	57432343	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_57432647_57433205_57433251_57435885_57435956_57440546_57440683_57445542
transcript_19452.known	chr12	-	4216	14	FSM	ENSMUSG00000021022.10	ENSMUST00000021410.10	4216	14	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_13	62.3614203298973	775	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCCCTGGGCTTAGGATC	NA	False	NA	NA	False	TATAAA	-17	NA	55349783	55325775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_55328591_55329698_55329759_55331561_55331700_55334705_55334843_55335223_55335300_55335375_55335432_55336444_55336578_55339288_55339360_55340566_55340665_55344562_55344676_55345195_55345301_55345678_55345807_55349378_55349581_55349699
transcript_19460.known	chr12	+	2250	8	FSM	ENSMUSG00000021023.15	ENSMUST00000184766.8	2250	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	146.839771068151	2062	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCGTCAAACTCACTTTT	NA	False	NA	36	True	AATAAA	-37	NA	55350027	55429298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_55350118_55350400_55351670_55353123_55353172_55355521_55355655_55384944_55385053_55423898_55424048_55426066_55426263_55429041
transcript_19461.known	chr12	+	3122	7	FSM	ENSMUSG00000021023.15	ENSMUST00000021411.15	3122	7	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_3	136.205726751851	2314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTTAGTTGGTTTTGCA	NA	False	NA	19	True	AATAAA	-20	NA	55349421	55429281	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_55351670_55353123_55353172_55355521_55355655_55384944_55385053_55423898_55424048_55426066_55426263_55429041
transcript_19477.known	chr12	+	914	6	FSM	ENSMUSG00000021024.15	ENSMUST00000162711.2	914	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1071.30021935963	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTTTTGGAAATGGCGGT	NA	False	NA	3	True	AATAAA	-4	NA	55445579	55465226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_55445777_55454786_55454869_55456911_55457068_55458971_55459151_55461188_55461284_55465021
transcript_1948.known	chr1	+	3929	14	FSM	ENSMUSG00000038305.16	ENSMUST00000167085.8	3929	14	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_13	12.6939392890685	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACGTCTGTAGAACCGTT	NA	False	NA	NA	False	AATAAA	-17	NA	57814019	57987553	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_57814184_57838463_57838514_57871211_57871297_57894622_57894684_57918666_57918776_57921864_57921915_57924861_57925109_57939792_57940000_57941247_57941384_57962524_57962584_57977070_57977181_57979531_57979635_57982179_57982401_57985226
transcript_19480.known	chr12	-	523	1	FSM	ENSMUSG00000059033.8	ENSMUST00000161190.2	523	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	362	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTCTAGACACAGAGACCC	NA	False	NA	NA	False	NA	NA	NA	55443014	55442491	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_55442500_55443000
transcript_19481.known	chr12	+	1042	7	FSM	ENSMUSG00000021024.15	ENSMUST00000021412.9	1042	7	0	0	0	0	multi-exon	FALSE	canonical	3	2423	junction_5	124.008960249743	24155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCGGTGCATCCTGTCTTT	NA	False	NA	16	True	AATAAA	-17	NA	55445559	55465239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_55445777_55454253_55454349_55454786_55454869_55456911_55457068_55458971_55459151_55461188_55461284_55465021
transcript_19482.known	chr12	-	1578	6	FSM	ENSMUSG00000021025.9	ENSMUST00000021413.9	1578	6	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_5	20.9914268214431	815	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTGTCCCGCTCGTTTGC	NA	False	NA	-2	True	ATTAAA	-17	NA	55539432	55536194	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_55536755_55537190_55537452_55537555_55537645_55537904_55538116_55538454_55538564_55539084
transcript_19489.nnic	chr12	+	1398	11	NNC	ENSMUSG00000012076.9	novel	2609	10	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	77.372152613198	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTAGTGTTGTGTGTTAC	NA	False	NA	2	True	AATAAA	-20	NA	55883107	55916521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_55883431_55888355_55888447_55891180_55891309_55892068_55892149_55906875_55906973_55907872_55907957_55908174_55908240_55909918_55909959_55912735_55912863_55915281_55915306_55916182
transcript_19490.known	chr12	+	2609	10	FSM	ENSMUSG00000012076.9	ENSMUST00000059250.8	2609	10	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_3	20.0277585143997	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTAGTGTTGTGTGTTAC	NA	False	NA	2	True	AATAAA	-20	NA	55883108	55916521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_55883431_55888355_55888447_55891180_55891309_55892068_55892149_55906875_55906973_55907872_55907957_55908174_55908240_55909918_55909959_55912735_55912863_55914946
transcript_19498.nnic	chr12	+	626	3	NNC	ENSMUSG00000012076.9	novel	481	2	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAAGAACCCAGTGTTGT	NA	False	NA	NA	False	NA	NA	NA	55883108	55886520	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_55883431_55884280_55884342_55886277
transcript_1950.known	chr1	+	384	2	FSM	ENSMUSG00000038305.16	ENSMUST00000168895.2	384	2	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCCATCTATATCACCCT	NA	False	NA	NA	False	NA	NA	NA	57814075	57838739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_57814184_57838463
transcript_19500.known	chr12	+	481	2	FSM	ENSMUSG00000012076.9	ENSMUST00000218779.2	481	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTTACATATAATCAATAAA	NA	False	NA	NA	False	NA	NA	NA	55883154	55886482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_55883431_55886277
transcript_19501.nic	chr12	-	1552	9	NIC	ENSMUSG00000021028.9	novel	1512	9	NA	NA	14	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_8	97.3735558301123	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATGTCTTTTTTACTGT	NA	False	NA	NA	False	AATAAA	-33	NA	56392665	56375087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_-_56375585_56377013_56377053_56382582_56382681_56384087_56384241_56384548_56384615_56386985_56387083_56387169_56387389_56389020_56389195_56392456
transcript_19504.known	chr12	-	1512	9	FSM	ENSMUSG00000021028.9	ENSMUST00000021416.9	1512	9	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_1	38.7193427113633	859	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATGTCTTTTTTACTGT	NA	False	NA	NA	False	AATAAA	-33	NA	56392679	56375087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_56375585_56377013_56377053_56382582_56382681_56384087_56384241_56384548_56384615_56386985_56387083_56387169_56387389_56389020_56389141_56392456
transcript_19505.known	chr12	-	1264	2	FSM	ENSMUSG00000058669.8	ENSMUST00000072631.6	1264	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGTGTTTTCCCCTTGAC	NA	False	NA	NA	False	AAAAAG	-4	NA	56660069	56658173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_56659065_56659696
transcript_1951.known	chr1	+	4939	9	FSM	ENSMUSG00000026039.10	ENSMUST00000027202.9	4939	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	80.2616813928041	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATCTATCTATTTATTTA	5139	False	NA	15	True	ATTAAA	-19	NA	58035129	58065058	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_58035472_58037254_58037381_58039122_58039299_58040376_58040455_58042052_58042139_58052665_58052902_58054517_58057143_58058747_58058902_58063942
transcript_19512.known	chr12	+	2117	11	FSM	ENSMUSG00000047022.19	ENSMUST00000123498.8	2117	11	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_10	14.6659469520382	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTTGGTATTTTTTAAT	NA	False	NA	NA	False	AATAAA	-31	NA	57277231	57543985	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144_57354251_57372309_57372440_57378781_57378816_57379074_57379246_57410912_57411021_57461101_57461197_57503738_57503970_57543243
transcript_19514.known	chr12	+	1424	10	FSM	ENSMUSG00000047022.19	ENSMUST00000145003.8	1424	10	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_9	13.9602610609146	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAGGAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57277231	57504018	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144_57354251_57372309_57372440_57378781_57378816_57379074_57379246_57410912_57411021_57461101_57461197_57503738
transcript_19517.nic	chr12	+	1885	10	NIC	ENSMUSG00000047022.19	novel	2117	11	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	1	4	junction_1	19.7652894404981	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTTGGTATTTTTTAAT	NA	False	NA	NA	False	AATAAA	-31	NA	57277256	57543985	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_57277398_57352796_57352924_57354144_57354251_57372309_57372440_57378781_57378816_57379074_57379246_57410912_57411021_57461101_57461197_57503738_57503970_57543243
transcript_19518.nic	chr12	+	1227	9	NIC	ENSMUSG00000047022.19	novel	1424	10	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_8	24.3435694794334	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATATGTAATGCTGACTT	NA	False	NA	NA	False	AATAAA	-21	NA	57277197	57413379	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144_57354251_57372309_57372440_57378781_57378816_57379074_57379246_57410912_57411021_57413235
transcript_19520.nic	chr12	+	1404	8	ISM	ENSMUSG00000047022.19	ENSMUST00000145003.8	1424	10	-34	92677	-15	-2038	5prime_fragment	FALSE	canonical	3	52	junction_6	11.4196393666922	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCAGCCGTTTCTTTGTA	NA	False	NA	NA	False	AATAAA	-29	NA	57277197	57411341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144_57354251_57372309_57372440_57378781_57378816_57379074_57379246_57410912
transcript_19522.known	chr12	+	3737	7	FSM	ENSMUSG00000047022.19	ENSMUST00000153439.2	3737	7	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	23.4591844132172	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAGAGTTCATAATTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	57277276	57413960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_57277398_57352796_57352924_57354144_57354251_57372309_57372440_57378781_57378816_57379074_57379246_57410912
transcript_19524.nic	chr12	+	1033	6	ISM	ENSMUSG00000047022.19	ENSMUST00000145003.8	1424	10	-34	124974	-15	6183	5prime_fragment	FALSE	canonical	3	58	junction_5	9.81835016690686	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTGACTAACATATAATG	NA	False	NA	NA	False	AATAAA	-17	NA	57277197	57379044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144_57354251_57372309_57372440_57378781
transcript_19525.known	chr12	+	1168	5	FSM	ENSMUSG00000047022.19	ENSMUST00000148418.8	1168	5	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_4	7.69740215917033	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACATTGTATGTATTTCTT	NA	False	NA	NA	False	NA	NA	NA	57277221	57372861	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144_57354251_57372309
transcript_19527.known	chr12	+	1856	4	FSM	ENSMUSG00000047022.19	ENSMUST00000153755.8	1856	4	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	7.34846922834953	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTATGTAGTACAAAAATAA	NA	False	NA	NA	False	AATAAA	-24	NA	57277212	57355481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144
transcript_19532.known	chr12	+	1720	2	FSM	ENSMUSG00000079104.5	ENSMUST00000139049.2	1720	2	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTAATCCATTACTGTCTT	NA	False	NA	NA	False	NA	NA	NA	57277197	57286668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_57277398_57285148
transcript_19536.known	chr12	-	435	1	FSM	ENSMUSG00000066489.3	ENSMUST00000085379.3	435	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGACATCCCATGCACGG	NA	False	NA	49	True	AATACA	-30	NA	57679801	57679366	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_57679400_57679800
transcript_19537.known	chr12	-	4109	20	FSM	ENSMUSG00000020986.14	ENSMUST00000021375.12	4109	20	0	0	0	0	multi-exon	FALSE	canonical	3	521	junction_10	53.3728846882441	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGTCAGCTATGCTGAAGA	2678	False	NA	-27	True	NA	NA	NA	59058803	59005168	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_59006873_59013765_59013832_59015598_59015755_59018025_59018113_59019666_59019829_59021367_59021446_59025247_59025402_59029353_59029461_59031917_59032008_59032876_59032958_59036135_59036260_59037758_59037875_59038910_59039070_59043921_59044067_59045044_59045125_59048604_59048842_59051275_59051363_59052044_59052103_59053775_59054022_59058631
transcript_19558.known	chr12	+	1588	10	FSM	ENSMUSG00000060121.16	ENSMUST00000021379.8	1588	10	0	0	0	0	multi-exon	FALSE	canonical	1	279	junction_3	161.403565980158	2440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTTTAGTTTAATTTCAC	NA	False	NA	NA	False	TTTAAA	-6	NA	59060178	59075256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_59060400_59060755_59060841_59063651_59063742_59063953_59064014_59064797_59064912_59067174_59067220_59068453_59068523_59071788_59071900_59073640_59073700_59074522
transcript_19559.known	chr12	+	1946	10	FSM	ENSMUSG00000060121.16	ENSMUST00000182188.8	1946	10	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_2	336.207607819269	1084	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTCATACAGATGAAATGGC	NA	False	NA	NA	False	AATAAA	-27	NA	59060239	59075185	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_59060841_59062860_59062995_59063651_59063742_59063953_59064014_59064797_59064912_59067174_59067220_59068453_59068523_59071788_59071900_59073640_59073700_59074522
transcript_19560.known	chr12	+	191	1	FSM	ENSMUSG00000065232.3	ENSMUST00000083298.3	191	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGGGGAAAAGTACTTGTCA	6130	False	NA	NA	False	NA	NA	NA	59087120	59087311	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_59087100_59087300
transcript_19563.known	chr12	-	1486	7	FSM	ENSMUSG00000020993.10	ENSMUST00000217660.2	1486	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	143.962668772151	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTGAAAGTTTATTTTAAT	NA	False	NA	-5	True	NA	NA	NA	59108258	59089913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_59090463_59091038_59091133_59094908_59094993_59097053_59097172_59098426_59098495_59106041_59106298_59107941
transcript_19566.known	chr12	-	785	4	FSM	ENSMUSG00000020993.10	ENSMUST00000218686.2	785	4	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_3	140.478547195727	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGTTCAAATGACCAAAAT	NA	False	NA	NA	False	ATTAAA	-25	NA	59108204	59090118	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_59090463_59091038_59091133_59094908_59094993_59107941
transcript_19569.known	chr12	+	3485	9	FSM	ENSMUSG00000020994.6	ENSMUST00000021381.6	3485	9	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_8	34.8308412186671	479	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACAAATATCTTCATTTA	NA	False	NA	9	True	ATTAAA	-43	NA	59113669	59120784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115687_59115783_59115901_59115978_59116927_59117084_59117164_59117304_59118211
transcript_19570.known	chr12	+	882	1	FSM	ENSMUSG00000066487.4	ENSMUST00000085368.4	882	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2517	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTTTTTATATGAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	59127804	59128686	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_59127800_59128700
transcript_19571.known	chr12	+	2649	25	FSM	ENSMUSG00000021000.18	ENSMUST00000176322.8	2649	25	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_5	130.239736213219	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTATGGGTAAATTATTTC	NA	False	NA	4	True	AATAAA	-18	NA	59178252	59236738	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_59178391_59182849_59182982_59184366_59184389_59184483_59184573_59191484_59191557_59193121_59193149_59193632_59193744_59194637_59194710_59196249_59196355_59201141_59201265_59205038_59205154_59206376_59206424_59206961_59207053_59209666_59209806_59215719_59215822_59217043_59217105_59217742_59217779_59219310_59219379_59220891_59220975_59223116_59223246_59226635_59226795_59230972_59231090_59232514_59232574_59235096_59235332_59236421
transcript_19572.known	chr12	+	4434	24	FSM	ENSMUSG00000021000.18	ENSMUST00000176464.8	4434	24	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_5	45.1017752679996	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCGAAGGCCAGGGAAAG	NA	False	NA	NA	False	NA	NA	NA	59178071	59238369	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_59178391_59182849_59182982_59184366_59184389_59184483_59184573_59191484_59191557_59193632_59193744_59194637_59194710_59196249_59196355_59201141_59201265_59205038_59205154_59206376_59206424_59206961_59207053_59209666_59209806_59215719_59215822_59217043_59217105_59217742_59217779_59219310_59219379_59220891_59220975_59223116_59223246_59226635_59226795_59230972_59231090_59232514_59232574_59235096_59235332_59236421
transcript_19586.known	chr12	-	6459	5	FSM	ENSMUSG00000020948.10	ENSMUST00000222508.2	6459	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	2.9474565306379	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTATCATGTAATCATTA	NA	False	NA	-4	True	NA	NA	NA	65012308	64985606	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_64990388_64996787_64996997_64998149_64998594_65003612_65004512_65012182
transcript_19588.known	chr12	-	1732	2	FSM	ENSMUSG00000020948.10	ENSMUST00000221957.2	1732	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGTAGATGACCTTAATC	NA	False	NA	NA	False	NA	NA	NA	65012287	65002884	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_65004512_65012182
transcript_1959.known	chr1	-	2512	7	FSM	ENSMUSG00000054770.17	ENSMUST00000114410.10	2512	7	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_6	14.3372087784044	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTGTGACTACTTACT	NA	False	NA	1	True	AATAAA	-25	NA	58009287	57994406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_57995980_57998301_57998405_58001059_58001155_58002226_58002421_58004487_58004700_58006655_58006883_58009179
transcript_19595.known	chr12	+	3457	15	FSM	ENSMUSG00000035597.20	ENSMUST00000220798.2	3457	15	0	0	0	0	multi-exon	TRUE	canonical	3	88	junction_9	125.885678620058	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAATTGTTGATGAATTCA	7508	False	NA	19	True	AATAAA	-16	NA	65083107	65108929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_65083243_65089234_65089582_65090005_65090652_65090779_65090899_65094886_65095055_65100059_65100226_65100744_65100853_65101929_65102095_65102207_65102308_65102411_65102539_65103024_65103294_65104502_65104688_65106644_65106720_65107924_65108040_65108197
transcript_19596.known	chr12	+	4069	14	FSM	ENSMUSG00000035597.20	ENSMUST00000120580.8	4069	14	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_3	84.525476709793	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTCCTGTGGTCTCCTTC	7507	False	NA	8	True	AATAAA	-16	NA	65083106	65110160	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_65083243_65089234_65089582_65090005_65090132_65090779_65090899_65094886_65095055_65100059_65100226_65100744_65100853_65101929_65102095_65102411_65102539_65103024_65103294_65104502_65104688_65106644_65106720_65107924_65108040_65108197
transcript_1960.known	chr1	-	2495	7	FSM	ENSMUSG00000054770.17	ENSMUST00000161608.8	2495	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	29.1228241914978	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGACTTTTCTGTGACTAC	NA	False	NA	-4	True	AATAAA	-20	NA	58008683	57994411	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_57995980_57998301_57998405_58001059_58001155_58002226_58002421_58004509_58004700_58006655_58006883_58008565
transcript_19613.known	chr12	-	981	7	FSM	ENSMUSG00000020949.10	ENSMUST00000221166.2	981	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	3855.04114764032	2685	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGTGTGTTCTGTATT	NA	False	NA	-2	True	AATAAA	-29	NA	65120736	65109197	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116720_65116827_65120588
transcript_19614.known	chr12	-	654	5	FSM	ENSMUSG00000020949.10	ENSMUST00000220983.2	654	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	4405.18495638946	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACCTTGTAAACTAGAAGA	NA	False	NA	-59	True	NA	NA	NA	65120674	65109254	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_65109515_65110451_65110550_65115775_65115884_65116724_65116827_65120588
transcript_19615.known	chr12	-	1233	6	FSM	ENSMUSG00000020949.10	ENSMUST00000221710.2	1233	6	0	0	0	0	multi-exon	FALSE	canonical	3	9942	junction_1	352.092828668804	1069	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCAGCTGTCCTCAGGTCC	NA	False	NA	NA	False	CATAAA	-35	NA	65120736	65109878	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
transcript_19616.known	chr12	-	408	3	FSM	ENSMUSG00000020949.10	ENSMUST00000221706.2	408	3	0	0	0	0	multi-exon	FALSE	canonical	3	9974	junction_1	427.5	486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTAGGGATTGGACTTAG	NA	False	NA	NA	False	NA	NA	NA	65120740	65115729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_65115884_65116724_65116827_65120588
transcript_19617.known	chr12	-	1109	3	FSM	ENSMUSG00000020949.10	ENSMUST00000223167.2	1109	3	0	0	0	0	multi-exon	FALSE	canonical	3	9641	junction_1	150.5	1094	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACTGACTTATTTATTGT	NA	False	NA	-14	True	AATAAA	-17	NA	65113216	65109209	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_65109515_65110451_65110550_65112510
transcript_19620.known	chr12	+	1682	7	FSM	ENSMUSG00000055884.9	ENSMUST00000223051.2	1682	7	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_4	45.9737243796207	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATCAGTAGTAGTTACTG	9280	False	NA	NA	False	AATAAA	-12	NA	65122376	65140858	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_65122952_65123815_65123989_65129805_65129884_65134931_65135091_65137692_65137825_65139129_65139263_65140426
transcript_19623.nnic	chr12	+	1144	4	NNC	ENSMUSG00000055884.9	novel	1682	7	NA	NA	-61	-9181	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	79.6673640136844	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACTTACGTATGTTCATG	9219	False	NA	NA	False	AATAAA	-25	NA	65122315	65131677	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_65122952_65123815_65123989_65129805_65129884_65131420
transcript_19624.nnic	chr12	+	939	4	NNC	ENSMUSG00000055884.9	novel	1682	7	NA	NA	-61	-6650	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_3	59.9462722406953	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAGCAAAAGGATAAT	9219	False	NA	NA	False	NA	NA	NA	65122315	65134208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_65122952_65123815_65123989_65129805_65129884_65134156
transcript_19627.known	chr12	-	4017	14	FSM	ENSMUSG00000047534.18	ENSMUST00000052201.9	4017	14	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_12	54.2140181439599	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTGGGTTTGTT	NA	False	NA	-5	True	AATAAA	-18	NA	65219354	65179507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_65180400_65180577_65180633_65183523_65183624_65185418_65185571_65187506_65187665_65189996_65190167_65195495_65196325_65199461_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65208176_65208803_65219222
transcript_19631.nic	chr12	-	3636	13	NIC	ENSMUSG00000047534.18	novel	4017	14	NA	NA	-221	0	combination_of_known_junctions	FALSE	canonical	3	78	junction_12	86.8969296862029	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTGGGTTTGTT	NA	False	NA	-5	True	AATAAA	-18	NA	65219599	65179507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_-_65180400_65180577_65180633_65183523_65183624_65185418_65185571_65187506_65187665_65189996_65190167_65195495_65196325_65199461_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65219222
transcript_19635.known	chr12	-	5016	13	FSM	ENSMUSG00000047534.18	ENSMUST00000140391.8	5016	13	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_11	56.3414072123395	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTGGGTTTGTT	NA	False	NA	-5	True	AATAAA	-18	NA	65219378	65179507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_65180400_65180577_65180633_65183523_65183624_65185418_65185571_65187506_65187665_65189996_65190167_65195495_65196325_65199461_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65208176_65208803_65219222
transcript_19637.nic	chr12	-	1812	7	ISM	ENSMUSG00000047534.18	ENSMUST00000052201.9	4017	14	-236	20039	-212	0	5prime_fragment	FALSE	canonical	3	216	junction_5	67.8298524905435	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCAAAAAAAAAAGATGCAGA	NA	False	NA	NA	False	AAGAAA	-9	NA	65219590	65199546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_-_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65208176_65208803_65219222
transcript_19639.nnic	chr12	-	767	6	NNC	ENSMUSG00000047534.18	novel	969	6	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_5	145.629117967527	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCAAAAAAAAAAGATGCAGA	NA	False	NA	NA	False	AAGAAA	-9	NA	65219401	65199546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205406_65219222
transcript_19640.known	chr12	-	969	6	FSM	ENSMUSG00000047534.18	ENSMUST00000221296.2	969	6	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_5	123.279195325083	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCAAAAAAAAAAGATGCAGA	NA	False	NA	NA	False	AAGAAA	-9	NA	65219373	65199546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65219222
transcript_19649.known	chr12	+	2228	2	FSM	ENSMUSG00000035560.6	ENSMUST00000046331.5	2228	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGATGACCTCTTTGTTTC	NA	False	NA	NA	False	AATAAA	-19	NA	65272290	65275228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_65274272_65274981
transcript_19650.known	chr12	-	1023	1	FSM	ENSMUSG00000060499.8	ENSMUST00000081908.8	1023	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5752	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTAGCTTTGGTTGTTTTG	NA	False	NA	-4	True	ATTAAA	-20	NA	66331175	66330152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_66330200_66331200
transcript_19660.nnic	chr12	-	613	2	Antisense	novelGene_ENSMUSG00000113948.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	388	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATATATTTCTATATAA	NA	False	NA	NA	False	NA	NA	NA	67558161	67557492	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr12_-_67557822_67557877
transcript_19663.known	chr12	+	556	1	FSM	ENSMUSG00000113948.2	ENSMUST00000221295.2	556	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	73717	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCAGCATAAAATAAAGGCA	NA	False	NA	NA	False	AAGAAA	-35	NA	67557529	67558085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_67557500_67558100
transcript_19668.known	chr12	-	1739	3	FSM	ENSMUSG00000113716.2	ENSMUST00000222118.2	1739	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGAAGTTTGTCTTTGTA	NA	False	NA	NA	False	NA	NA	NA	69167121	69161787	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_69162726_69163169_69163250_69166400
transcript_19671.known	chr12	+	680	1	FSM	ENSMUSG00000113600.2	ENSMUST00000223510.2	680	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGTGCTGTACTTTAAAAC	1027	False	NA	NA	False	AAGAAA	-28	NA	69169874	69170554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_69169900_69170600
transcript_19691.known	chr12	-	390	3	FSM	ENSMUSG00000034892.9	ENSMUST00000037023.9	390	3	0	0	0	0	multi-exon	FALSE	canonical	3	25458	junction_2	210	219084	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGTGTGTGTGTTTTGT	NA	False	NA	-10	True	AATAAA	-18	NA	69205960	69204495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_69204596_69205434_69205535_69205770
transcript_19695.known	chr12	+	1500	4	FSM	ENSMUSG00000034883.10	ENSMUST00000110621.3	1500	4	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_3	15.6276108929747	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCAATGTCTCAGCAGTTA	NA	False	NA	9	True	ATTAAA	-23	NA	69215587	69225783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_69215837_69218635_69218735_69221165_69221888_69225353
transcript_19696.known	chr12	+	767	3	FSM	ENSMUSG00000034883.10	ENSMUST00000222520.2	767	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	59	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATATCAATGTCTCAGCA	NA	False	NA	5	True	ATTAAA	-19	NA	69215594	69225779	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_69215837_69218635_69218735_69225353
transcript_1971.known	chr1	-	599	4	FSM	ENSMUSG00000054770.17	ENSMUST00000159826.2	599	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	25.3508711224421	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGCTTCCCCCGATGCCCA	NA	False	NA	NA	False	GGGGCT	-13	NA	58009207	57995738	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_57995980_57998301_57998405_58006655_58006883_58009179
transcript_19714.known	chr12	-	757	2	FSM	ENSMUSG00000049751.7	ENSMUST00000110620.2	757	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	21841	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTTTTGATTCTCAGTA	NA	False	NA	2	True	AATAAA	-24	NA	69230760	69229504	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_69229940_69230438
transcript_19717.known	chr12	-	1276	1	FSM	ENSMUSG00000049751.7	ENSMUST00000110619.2	1276	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGCCTTGTGTTTTGATT	NA	False	NA	-5	True	AATAAA	-17	NA	69230787	69229511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_69229500_69230800
transcript_19718.known	chr12	-	526	2	FSM	ENSMUSG00000049751.7	ENSMUST00000054544.7	526	2	0	0	0	0	multi-exon	FALSE	canonical	3	5332	junction_1	0	145695	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCAAGCCTTGTGTTTTG	NA	False	NA	-8	True	AATAAA	-14	NA	69230857	69229514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_69229940_69230756
transcript_19719.known	chr12	-	1706	19	FSM	ENSMUSG00000020974.7	ENSMUST00000021359.7	1706	19	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_1	34.9372011570955	1001	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTACACATTGTAGTTT	NA	False	NA	-5	True	AATAAA	-20	NA	69274969	69248546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_69248657_69249680_69249749_69250864_69251042_69253183_69253293_69254632_69254711_69254794_69254855_69255690_69255746_69256085_69256176_69256595_69256769_69258146_69258220_69258996_69259046_69259760_69259818_69260602_69260687_69262084_69262160_69268750_69268845_69269172_69269251_69269877_69269954_69273111_69273213_69274870
transcript_1972.known	chr1	-	2261	3	FSM	ENSMUSG00000054770.17	ENSMUST00000162410.8	2261	3	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	11	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCAAAAGAAGAGATAAAAGA	NA	False	NA	NA	False	ATTAAA	-16	NA	58009238	58002724	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_58004700_58006655_58006883_58009179
transcript_19720.known	chr12	-	1147	4	FSM	ENSMUSG00000113149.2	ENSMUST00000223192.2	1147	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	113.137084989848	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGTGATCCAGTTCTAAAA	NA	False	NA	-101	True	NA	NA	NA	69243878	69229607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_69229940_69232627_69232686_69239581_69239726_69243265
transcript_19721.known	chr12	-	1641	19	FSM	ENSMUSG00000020974.7	ENSMUST00000221411.2	1641	19	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_2	100.091563019339	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTACACATTGTAGTTT	NA	False	NA	-5	True	AATAAA	-20	NA	69274953	69248546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_69248657_69249680_69249749_69250913_69251042_69253183_69253293_69254632_69254711_69254794_69254855_69255690_69255746_69256085_69256176_69256595_69256769_69258146_69258220_69258996_69259046_69259760_69259818_69260602_69260687_69262084_69262160_69268750_69268845_69269172_69269251_69269877_69269954_69273111_69273213_69274870
transcript_19722.known	chr12	+	523	2	FSM	ENSMUSG00000113190.2	ENSMUST00000220745.2	523	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGACATTTCCCTGGCCT	NA	False	NA	NA	False	NA	NA	NA	69274699	69285058	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_69274771_69284606
transcript_19723.known	chr12	+	2620	13	FSM	ENSMUSG00000051890.14	ENSMUST00000063445.13	2620	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	3.37474278855276	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTCAGTGTGAATTTTAA	NA	False	NA	NA	False	AATAAA	-16	NA	69288605	69331406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_69288788_69297526_69297598_69298144_69298263_69298701_69298821_69300465_69300545_69302948_69303033_69304796_69304881_69305342_69305402_69306274_69306388_69309922_69309996_69315015_69315101_69316599_69316653_69329906
transcript_19726.known	chr12	+	228	2	FSM	ENSMUSG00000051890.14	ENSMUST00000127791.2	228	2	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAGGTCCGAGTGGGTTTT	NA	False	NA	NA	False	AATAAA	-26	NA	69288687	69289416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_69288788_69289288
transcript_19727.known	chr12	-	4732	33	FSM	ENSMUSG00000020982.10	ENSMUST00000021368.10	4732	33	0	0	0	0	multi-exon	TRUE	canonical	3	259	junction_6	33.0300526036517	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGCCAACA	NA	False	NA	NA	False	NA	NA	NA	69403939	69357295	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_69358855_69359028_69359109_69359198_69359243_69359339_69359441_69361189_69361223_69363017_69363213_69363516_69363595_69364800_69364955_69367146_69367197_69367300_69367344_69368874_69369125_69371005_69371127_69371206_69371266_69371692_69371751_69374407_69374521_69377861_69377925_69378645_69378750_69384592_69384682_69386492_69386557_69387664_69387851_69388046_69388256_69388346_69388425_69390902_69390966_69391453_69391530_69391682_69391754_69393089_69393164_69395624_69395712_69399080_69399149_69400567_69400717_69401420_69401547_69402803_69402907_69403052_69403122_69403824
transcript_19735.known	chr12	-	1340	14	FSM	ENSMUSG00000020982.10	ENSMUST00000222763.2	1340	14	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	83.598505125221	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACAAGCAGCTGCAGAAGC	NA	False	NA	NA	False	NA	NA	NA	69403912	69387751	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_69387831_69388046_69388256_69388346_69388425_69390902_69390966_69391453_69391530_69391682_69391754_69393089_69393164_69395624_69395712_69399080_69399149_69400567_69400717_69401420_69401547_69402803_69402907_69403052_69403122_69403824
transcript_19737.nic	chr12	-	1393	14	ISM	ENSMUSG00000020982.10	ENSMUST00000220674.2	2370	20	-53	16511	-30	0	5prime_fragment	FALSE	canonical	3	286	junction_8	27.062496156579	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGGGAAAAAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	69403969	69387775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_-_69387851_69388046_69388256_69388346_69388425_69390902_69390966_69391453_69391530_69391682_69391754_69393089_69393164_69395624_69395712_69399080_69399149_69400567_69400717_69401420_69401547_69402803_69402907_69403052_69403122_69403824
transcript_19738.known	chr12	+	1905	13	FSM	ENSMUSG00000020978.11	ENSMUST00000021362.5	1905	13	0	0	0	0	multi-exon	TRUE	canonical	3	493	junction_10	56.6727937863977	182	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGACTTTTTATCCCACG	NA	False	NA	NA	False	NA	NA	NA	69343495	69357461	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_69343922_69346989_69347070_69349097_69349216_69350307_69350424_69350654_69350737_69351317_69351402_69352401_69352483_69352556_69352616_69353963_69354074_69354391_69354465_69355731_69355820_69356760_69356814_69356926
transcript_19743.known	chr12	-	882	6	FSM	ENSMUSG00000020982.10	ENSMUST00000220484.2	882	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	137.842518839435	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTTTAATCTTTTGAGT	NA	False	NA	NA	False	NA	NA	NA	69403923	69398762	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_69399149_69400567_69400667_69401420_69401547_69402803_69402907_69403052_69403122_69403824
transcript_19745.known	chr12	+	1534	2	FSM	ENSMUSG00000044147.9	ENSMUST00000050063.9	1534	2	0	0	0	0	multi-exon	FALSE	canonical	3	1327	junction_1	0	360	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAACTGCCGTTTGTCTTT	NA	False	NA	30	True	AGTAAA	-19	NA	69418923	69420557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_69418998_69419097
transcript_19746.known	chr12	-	1018	6	FSM	ENSMUSG00000049882.11	ENSMUST00000238220.2	1018	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	78.351515620312	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGAAACGTTGACAATC	NA	False	NA	-59	True	NA	NA	NA	69629791	69624455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_69624715_69626607_69626785_69627891_69628012_69629049_69629120_69629304_69629400_69629494
transcript_1975.known	chr1	-	4181	2	FSM	ENSMUSG00000054770.17	ENSMUST00000160130.2	4181	2	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAATATTATAAAATTAA	NA	False	NA	NA	False	GGGGCT	-16	NA	58009238	58002760	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_58006883_58009179
transcript_19751.known	chr12	-	875	6	FSM	ENSMUSG00000049882.11	ENSMUST00000238784.2	875	6	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_4	48.4710222710435	747	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGAAGACTGCCTCACAG	NA	False	NA	NA	False	NA	NA	NA	69629884	69624624	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_69624715_69626679_69626785_69627891_69628012_69629049_69629120_69629304_69629405_69629494
transcript_19753.nnic	chr12	-	902	6	NNC	ENSMUSG00000049882.11	novel	1109	6	NA	NA	36	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_5	66.6375269649167	53	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGAAGCAGCATGGTTGG	NA	False	NA	-5	True	AATAAA	-24	NA	69629848	69624401	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_69624715_69626679_69626785_69627891_69628012_69629049_69629120_69629293_69629405_69629665
transcript_19765.known	chr12	-	3340	10	FSM	ENSMUSG00000020988.10	ENSMUST00000021370.10	3340	10	0	0	0	0	multi-exon	FALSE	canonical	3	420	junction_5	64.6821287356699	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTTATGATCATATT	NA	False	NA	0	True	AATAAA	-34	NA	69771647	69737206	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_69739271_69746259_69746392_69748057_69748216_69748976_69749145_69752538_69752574_69753897_69754061_69759395_69759528_69768085_69768238_69768851_69768968_69771427
transcript_1977.known	chr1	+	4606	35	FSM	ENSMUSG00000064294.13	ENSMUST00000040999.14	4606	35	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	6.33501009795379	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAAACAAAAAAGCAAA	NA	False	NA	NA	False	NA	NA	NA	58152294	58239857	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_58152472_58154029_58154088_58157756_58157854_58158639_58158749_58160136_58160264_58164176_58164239_58166785_58166867_58177374_58177456_58180509_58180655_58181828_58181922_58185582_58185735_58186352_58186447_58189453_58189564_58191712_58191898_58192179_58192343_58192638_58192732_58197359_58197530_58198063_58198179_58198795_58198919_58202507_58202605_58204995_58205121_58206761_58206896_58208936_58209025_58209815_58209903_58210900_58211093_58211279_58211508_58215632_58215729_58216677_58216807_58218475_58218551_58219764_58219818_58222624_58222740_58225435_58225502_58227493_58227683_58233784_58233953_58239328
transcript_19772.nnic	chr12	-	3167	8	NIC	ENSMUSG00000020988.10	novel	3340	10	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	3	44	junction_4	181.049998731887	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTTATGATCATATT	NA	False	NA	0	True	AATAAA	-34	NA	69771672	69737206	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_-_69739271_69746259_69746392_69748057_69748216_69748976_69749145_69759395_69759528_69768085_69768238_69768851_69768968_69771427
transcript_19775.known	chr12	-	438	4	FSM	ENSMUSG00000020988.10	ENSMUST00000223387.2	438	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	275.076151072551	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTCAGGCCTTGTATGA	NA	False	NA	NA	False	AAGAAA	-6	NA	69771547	69759494	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_69759528_69768085_69768238_69768851_69768985_69771427
transcript_19776.nic	chr12	-	699	3	ISM	ENSMUSG00000020988.10	ENSMUST00000021370.10	3340	10	-25	30693	-25	-8405	5prime_fragment	FALSE	canonical	3	564	junction_2	31.5	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGCAGTTTAGATAGTTG	NA	False	NA	NA	False	ATTAAA	-24	NA	69771672	69767899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_-_69768238_69768851_69768968_69771427
transcript_19777.nic	chr12	-	603	3	ISM	ENSMUSG00000020988.10	ENSMUST00000021370.10	3340	10	-25	30789	-25	-8501	5prime_fragment	FALSE	canonical	3	564	junction_2	31.5	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTGTGCCTATGTAATT	NA	False	NA	NA	False	AAAAAG	-15	NA	69771672	69767995	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_-_69768238_69768851_69768968_69771427
transcript_1978.known	chr1	+	1568	8	FSM	ENSMUSG00000064294.13	ENSMUST00000162011.3	1568	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	6.53405521487387	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATGTTTTGCCTAAATGT	NA	False	NA	NA	False	NA	NA	NA	58152344	58178281	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_58152472_58154029_58154088_58157756_58157854_58158639_58158749_58160136_58160264_58164176_58164239_58166785_58166867_58177374
transcript_19789.known	chr12	+	1599	6	FSM	ENSMUSG00000054894.7	ENSMUST00000220916.2	1599	6	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	68.5787138987018	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGGCTAGTCTTTACTT	NA	False	NA	4	True	AATAAA	-16	NA	69771723	69791434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_69771789_69772228_69772329_69784724_69784836_69787672_69787882_69788418_69788591_69790492
transcript_1979.known	chr1	+	3876	12	FSM	ENSMUSG00000051223.15	ENSMUST00000050552.15	3876	12	0	0	0	0	multi-exon	FALSE	canonical	3	1694	junction_11	87.7965341283964	1196	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTACTGTGTCTGTGCTTT	657	False	NA	13	True	NA	NA	NA	58432056	58446512	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_58432376_58433360_58433435_58436834_58437012_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193
transcript_19796.known	chr12	+	1485	5	FSM	ENSMUSG00000054894.7	ENSMUST00000021372.6	1485	5	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	45.2513811943901	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGAAGGCTAGTCTTTAC	NA	False	NA	2	True	AATAAA	-14	NA	69771735	69791432	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_69771789_69784724_69784836_69787672_69787882_69788418_69788591_69790492
transcript_19802.nic	chr12	+	1217	5	NIC	ENSMUSG00000054894.7	novel	1599	6	NA	NA	0	-820	intron_retention	FALSE	canonical	3	110	junction_1	42.1270400099509	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTGGTGTCACTATTAA	NA	False	NA	NA	False	ATTAAA	-16	NA	69771723	69790612	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_69772329_69784724_69784836_69787672_69787882_69788418_69788591_69790492
transcript_19803.nic	chr12	+	2039	5	NIC	ENSMUSG00000054894.7	novel	1599	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	110	junction_1	42.1270400099509	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGGCTAGTCTTTACTT	NA	False	NA	4	True	AATAAA	-16	NA	69771723	69791434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_69772329_69784724_69784836_69787672_69787882_69788418_69788591_69790492
transcript_19807.nic	chr12	+	1410	4	NIC	ENSMUSG00000054894.7	novel	1599	6	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	90.3487071788462	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGGCTAGTCTTTACTT	NA	False	NA	4	True	AATAAA	-16	NA	69771701	69791434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_69771789_69787672_69787882_69788418_69788591_69790492
transcript_19808.known	chr12	-	4452	31	FSM	ENSMUSG00000034761.16	ENSMUST00000049239.8	4452	31	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_9	26.8295856596159	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTATAAAGTATTTGTTCT	NA	False	NA	NA	False	AATAAA	-15	NA	69939937	69850532	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_69852126_69853971_69854028_69855985_69856057_69858047_69858141_69859909_69859979_69862528_69862707_69863063_69863168_69864795_69864855_69865157_69865276_69869576_69869638_69870195_69870276_69871353_69871439_69872515_69872558_69873064_69873163_69874135_69874293_69874797_69874841_69877202_69877271_69878325_69878385_69884768_69884848_69888693_69888811_69889661_69889744_69891129_69891193_69892454_69892587_69896320_69896394_69897599_69897643_69897727_69897776_69899472_69899529_69903054_69903120_69903546_69903638_69921050_69921109_69939426
transcript_19809.known	chr12	-	2524	5	FSM	ENSMUSG00000021067.9	ENSMUST00000021467.8	2524	5	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_4	6.57171971404746	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTGGTCCTTGAATGCA	NA	False	NA	-14	True	ATTAAA	-17	NA	70033776	70011785	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_70013122_70015843_70015988_70022741_70023013_70030982_70031427_70033447
transcript_19811.known	chr12	-	2825	20	FSM	ENSMUSG00000021069.18	ENSMUST00000071250.13	2825	20	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_17	3.93154724147013	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCTTGGATTCCTTTCC	6200	False	NA	0	True	AATAAA	-28	NA	70274457	70237584	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_70237931_70240512_70240580_70241006_70241142_70242277_70242486_70243744_70243887_70243991_70244051_70244171_70244320_70244433_70244536_70245203_70245319_70246415_70246580_70246905_70247053_70248042_70248136_70248618_70248763_70253135_70253219_70254444_70254557_70257800_70257933_70263336_70263441_70266362_70266442_70269598_70269701_70274114
transcript_19816.known	chr12	+	2795	8	FSM	ENSMUSG00000021072.13	ENSMUST00000021471.13	2795	8	0	0	0	0	multi-exon	FALSE	canonical	3	450	junction_7	45.1044140108849	622	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTGGTGTTCTCATAAG	NA	False	NA	13	True	ATTAAA	-16	NA	70499868	70514814	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_70500095_70502785_70502902_70503354_70503401_70505552_70505682_70507118_70507165_70507252_70507355_70511173_70511241_70512751
transcript_19821.known	chr12	+	4662	14	FSM	ENSMUSG00000048285.10	ENSMUST00000057859.9	4662	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	41.9310507589719	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCTCTTGTTATTATAC	787	False	NA	NA	False	AATAAA	-21	NA	70872287	70949008	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_70872348_70910650_70910917_70919264_70919356_70923933_70924038_70925190_70925268_70927392_70927580_70930439_70930596_70933797_70933864_70934582_70934652_70936705_70936881_70940380_70940717_70941650_70941783_70944115_70944208_70946157
transcript_19824.nic	chr12	+	542	4	ISM	ENSMUSG00000048285.10	ENSMUST00000057859.9	4662	14	-69	25019	-69	-18434	5prime_fragment	FALSE	canonical	3	120	junction_1	5.73488351136175	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATGGAAAAAGGAGGCCAG	718	False	NA	NA	False	NA	NA	NA	70872218	70923989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_70872348_70910650_70910917_70919264_70919356_70923933
transcript_19827.known	chr12	+	4022	13	FSM	ENSMUSG00000021076.7	ENSMUST00000021479.6	4022	13	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_4	23.8006769278149	1742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGATTGCTCTGCAGCCTT	9645	False	NA	NA	False	AATAAA	-21	NA	70984630	71011492	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_70984806_70987571_70987645_70989032_70989116_70990182_70990292_70994225_70994334_70996477_70996546_70999723_70999804_71001392_71001429_71003046_71003127_71003373_71003448_71004805_71004888_71006614_71006817_71008640
transcript_19836.known	chr12	+	3035	7	FSM	ENSMUSG00000021076.7	ENSMUST00000220770.2	3035	7	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_4	20.2127572477274	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAAAAAAAAAAAACC	9720	False	NA	NA	False	NA	NA	NA	70984705	71002217	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_70984806_70987571_70987645_70989032_70989116_70990182_70990292_70994225_70994334_70996477_70996546_70999723
transcript_19840.known	chr12	+	615	5	FSM	ENSMUSG00000021076.7	ENSMUST00000222291.2	615	5	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_4	20.5836707124847	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTGAGAGATTTAAGCTT	9731	False	NA	NA	False	NA	NA	NA	70984716	70994486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_70984806_70987571_70987645_70989032_70989116_70990182_70990292_70994225
transcript_19848.known	chr12	+	859	10	FSM	ENSMUSG00000060073.10	ENSMUST00000160864.8	859	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1213.70727855801	878	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTGGGTAATTGAAGCT	4782	False	NA	5	True	ATTAAA	-16	NA	71021456	71041279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_71021542_71030092_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
transcript_19858.known	chr12	-	1063	3	FSM	ENSMUSG00000085622.10	ENSMUST00000136690.3	1063	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	2	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGTTCATAGATTCCATT	NA	False	NA	NA	False	AATAAA	-26	NA	71062606	71056568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_71057254_71061229_71061282_71062280
transcript_19864.known	chr12	-	1790	1	FSM	ENSMUSG00000085622.10	ENSMUST00000222159.2	1790	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	71062369	71060579	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_71060600_71062400
transcript_19865.known	chr12	+	875	11	FSM	ENSMUSG00000060073.10	ENSMUST00000071704.4	875	11	0	0	0	0	multi-exon	FALSE	canonical	3	320	junction_2	1129.97747322679	18008	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGATTTTCATTAAATTTTG	4814	False	NA	-25	True	NA	NA	NA	71021488	71041249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_71021542_71025506_71025590_71030097_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
transcript_19866.known	chr12	+	562	7	FSM	ENSMUSG00000060073.10	ENSMUST00000162851.8	562	7	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	1480.68865359632	589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGTTGGGTAATTGAAGC	4788	False	NA	4	True	ATTAAA	-15	NA	71021462	71041278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_71021542_71025506_71025590_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
transcript_19867.known	chr12	+	1394	11	FSM	ENSMUSG00000060073.10	ENSMUST00000162626.8	1394	11	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	1218.25789141708	1381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4770	False	NA	NA	False	NA	NA	NA	71021444	71041695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_71021542_71025506_71025614_71030092_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
transcript_19868.known	chr12	+	1027	10	FSM	ENSMUSG00000060073.10	ENSMUST00000160683.8	1027	10	0	0	0	0	multi-exon	FALSE	canonical	3	3391	junction_7	435.06460425613	932	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATTGTTGGGTAATTGA	4770	False	NA	1	True	ATTAAA	-12	NA	71021444	71041275	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_71021542_71025506_71025590_71030092_71030217_71031266_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
transcript_19869.known	chr12	+	1022	2	FSM	ENSMUSG00000060073.10	ENSMUST00000161041.2	1022	2	0	0	0	0	multi-exon	FALSE	canonical	3	4712	junction_1	0	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAACAA	4807	False	NA	NA	False	NA	NA	NA	71021481	71026468	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_71021542_71025506
transcript_19870.known	chr12	+	4998	24	FSM	ENSMUSG00000048118.18	ENSMUST00000046305.12	4998	24	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_5	14.334249175764	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTAGGTTAATTCACTCTT	3381	False	NA	6	True	AATAAA	-17	NA	71062763	71145366	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_71062936_71063864_71063923_71066147_71066259_71068966_71069033_71070273_71070365_71083883_71083964_71084044_71084140_71086612_71086746_71091797_71091878_71092887_71092965_71093967_71094135_71106835_71106909_71108055_71108151_71108304_71108403_71109866_71110099_71113852_71114113_71116607_71116806_71118581_71118667_71119363_71119506_71121709_71122844_71123216_71123322_71133228_71133436_71134234_71134382_71144274
transcript_19871.nic	chr12	+	2213	18	ISM	ENSMUSG00000048118.18	ENSMUST00000046305.12	4998	24	-54	26712	-54	-3525	5prime_fragment	FALSE	canonical	3	75	junction_5	8.6192028308566	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAGTTAAGGTATGTCC	3327	False	NA	NA	False	AAGAAA	-10	NA	71062709	71118654	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_71062936_71063864_71063923_71066147_71066259_71068966_71069033_71070273_71070365_71083883_71083964_71084044_71084140_71086612_71086746_71091797_71091878_71092887_71092965_71093967_71094135_71106835_71106909_71108055_71108151_71108304_71108403_71109866_71110099_71113852_71114113_71116607_71116806_71118581
transcript_19872.nic	chr12	+	1545	15	ISM	ENSMUSG00000048118.18	ENSMUST00000046305.12	4998	24	-54	35405	-54	-4074	5prime_fragment	FALSE	canonical	3	75	junction_5	9.00141712199149	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTTGAAGACTCAATGGAC	3327	False	NA	NA	False	AGTAAA	-15	NA	71062709	71109961	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_71062936_71063864_71063923_71066147_71066259_71068966_71069033_71070273_71070365_71083883_71083964_71084044_71084140_71086612_71086746_71091797_71091878_71092887_71092965_71093967_71094135_71106835_71106909_71108055_71108151_71108304_71108403_71109866
transcript_19874.nic	chr12	+	727	7	ISM	ENSMUSG00000048118.18	ENSMUST00000134718.2	1639	15	-93	29896	-54	-9974	5prime_fragment	FALSE	canonical	3	75	junction_5	10.7496769977314	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGCTCACACTTGGTT	3327	False	NA	NA	False	NA	NA	NA	71062709	71084139	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_71062936_71063864_71063923_71066147_71066259_71068966_71069033_71070273_71070365_71083883_71083964_71084044
transcript_19879.known	chr12	-	990	6	FSM	ENSMUSG00000021079.17	ENSMUST00000166120.9	990	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	130.329735670721	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGTTGTCTTTACTGTA	NA	False	NA	-19	True	AATAAA	-12	NA	71183422	71169947	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774_71178861_71179280_71179417_71183328
transcript_19880.known	chr12	-	836	6	FSM	ENSMUSG00000021079.17	ENSMUST00000221367.2	836	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	131.247247590188	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCACCAGAAAGAGTCAAAA	NA	False	NA	NA	False	AAAACA	-4	NA	71183371	71170166	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774_71178861_71179280_71179533_71183328
transcript_19881.known	chr12	-	859	6	FSM	ENSMUSG00000021079.17	ENSMUST00000220482.2	859	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	130.329735670721	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGACCAATGGAAACCACCAG	NA	False	NA	NA	False	NA	NA	NA	71183386	71170198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774_71178861_71179280_71179573_71183328
transcript_19883.nnic	chr12	-	1009	6	NNC	ENSMUSG00000021079.17	novel	990	6	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	124.393890525218	277	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTTGTCTTTACTGTAT	NA	False	NA	-18	True	AATAAA	-13	NA	71183478	71169946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774_71178861_71180673_71180772_71183328
transcript_19884.known	chr12	+	578	5	FSM	ENSMUSG00000021078.6	ENSMUST00000021482.6	578	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.433012701892219	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATGATTGGACACATATTT	NA	False	NA	NA	False	AATAAA	-16	NA	71158218	71169995	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_71158355_71158479_71158524_71164299_71164382_71168637_71168781_71169822
transcript_19887.known	chr12	+	584	4	FSM	ENSMUSG00000021078.6	ENSMUST00000221962.2	584	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGAATGCCCACTGCCGT	NA	False	NA	NA	False	AAAACA	-21	NA	71158243	71169901	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_71158524_71164299_71164382_71168637_71168781_71169822
transcript_19890.known	chr12	-	794	4	FSM	ENSMUSG00000021079.17	ENSMUST00000021486.10	794	4	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_3	97.112763779479	777	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTTGTCTTTACTGTAT	NA	False	NA	-18	True	AATAAA	-13	NA	71183447	71169946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_71170461_71172235_71172332_71173106_71173172_71183328
transcript_19891.known	chr12	-	2564	3	FSM	ENSMUSG00000021079.17	ENSMUST00000221797.2	2564	3	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_2	111	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATTGAGCAGTTGTCTTT	NA	False	NA	-25	True	AATAAA	-6	NA	71183449	71169953	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_71172332_71173106_71173172_71183328
transcript_19892.known	chr12	-	1098	1	FSM	ENSMUSG00000021079.17	ENSMUST00000223544.2	1098	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCTTGTCTGTTCATCCC	NA	False	NA	NA	False	NA	NA	NA	71183409	71182311	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_71182300_71183400
transcript_19893.known	chr12	-	734	5	FSM	ENSMUSG00000021079.17	ENSMUST00000221892.2	734	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	110.141670134423	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATGAGTATCATTGAGCA	NA	False	NA	-34	True	AGTAAA	-1	NA	71183401	71169962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_71170377_71172235_71172332_71173106_71173172_71178774_71178861_71183328
transcript_19894.known	chr12	-	718	5	FSM	ENSMUSG00000021079.17	ENSMUST00000221559.2	718	5	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_4	64.161417534216	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGATTGCAAAAATAAACCAC	NA	False	NA	-53	True	NA	NA	NA	71183408	71170069	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774_71178861_71183328
transcript_19895.known	chr12	-	1193	4	FSM	ENSMUSG00000021079.17	ENSMUST00000221815.2	1193	4	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_3	67.9607729993315	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAAAGGAGAAAAATA	NA	False	NA	NA	False	NA	NA	NA	71183458	71171419	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_71172332_71173106_71173172_71178774_71178861_71183328
transcript_19897.known	chr12	+	5763	30	FSM	ENSMUSG00000034601.18	ENSMUST00000149564.8	5763	30	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_27	23.3199327353747	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGCTGTTTCTTAGAAG	NA	False	NA	22	True	AATAAA	-20	NA	71183621	71290077	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_71184813_71186428_71186503_71187638_71187709_71188823_71188894_71195017_71195193_71197016_71197239_71199423_71199572_71201535_71201698_71203820_71203945_71205601_71205732_71206964_71207183_71207897_71207971_71209349_71209575_71211157_71211333_71213839_71214035_71217292_71217481_71219902_71220014_71222696_71222778_71224602_71224797_71225813_71225933_71231196_71231397_71234154_71234312_71235361_71235582_71236180_71236429_71237668_71237740_71240040_71240164_71241065_71241241_71262815_71262971_71265964_71266074_71289717
transcript_199.known	SIRV3	+	1083	8	FSM	SIRV3A	SIRV304	1083	8	0	0	0	0	multi-exon	FALSE	canonical	3	1134	junction_6	907.203057620014	4224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGTTAACGTCTCGTAAG	NA	False	NA	NA	False	NA	NA	NA	1963	8937	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV3_+_2006_4003_4081_4568_4780_6057_6334_7270_7367_7872_7989_8124_8208_8755
transcript_19902.known	chr12	+	4507	28	FSM	ENSMUSG00000034601.18	ENSMUST00000045907.16	4507	28	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_27	19.0025628189986	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGCTGTTTCTTAGAAG	NA	False	NA	22	True	AATAAA	-20	NA	71184613	71290077	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_71184813_71186428_71186503_71187638_71187709_71188823_71188894_71195017_71195193_71197016_71197239_71199423_71199572_71201535_71201698_71203820_71203945_71205601_71205732_71206964_71207183_71207897_71207971_71209349_71209575_71211157_71211333_71213839_71214035_71217292_71217481_71219902_71220014_71222696_71222778_71224602_71224797_71225813_71225933_71231196_71231397_71234154_71234312_71235361_71235582_71236180_71236429_71237668_71237740_71240040_71240164_71241065_71241241_71289717
transcript_19904.nic	chr12	+	578	3	ISM	ENSMUSG00000113630.2	ENSMUST00000222756.2	1271	6	34304	22115	-18018	-22115	internal_fragment	FALSE	canonical	0	0	junction_1	0.5	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTTCATCCACAGACGG	NA	False	NA	NA	False	AATAAA	-20	NA	71569362	71580792	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_71569516_71576492_71576593_71580467
transcript_19905.known	chr12	+	5835	26	FSM	ENSMUSG00000034574.11	ENSMUST00000223272.2	5835	26	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	43.1749927620144	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTTTTCTATGCATTA	1803	False	NA	22	True	AATAAA	-22	NA	71877851	72039107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_71877971_71942500_71942721_71962472_71962563_71983332_71983405_71988946_71989042_71990827_71991162_71991957_71992069_71992171_71992276_71993001_71993069_71993288_71993407_71993772_71993912_71994166_71994226_71997967_71998156_71998606_71998907_71999225_71999334_72005520_72005548_72006579_72006687_72017867_72017953_72021963_72022071_72023569_72023659_72024416_72024586_72027527_72027636_72029466_72029528_72032456_72032589_72035659_72035831_72036452
transcript_19911.nnic	chr12	-	512	3	Antisense	novelGene_ENSMUSG00000034574.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	2	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAGAGCTTGCCGCCAAT	NA	False	NA	NA	False	ATTAAA	-26	NA	72036598	72028561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr12_-_72028865_72036258_72036400_72036530
transcript_19913.nnic	chr12	-	1327	2	Antisense	novelGene_ENSMUSG00000034574.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTATTGTCTCCATATTCA	NA	False	NA	NA	False	ATTAAA	-16	NA	72036602	71997363	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr12_-_71998347_72036258
transcript_19915.nnic	chr12	-	634	2	Antisense	novelGene_ENSMUSG00000034574.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	4	junction_1	0	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAGAGCTTGCCGCCAAT	NA	False	NA	NA	False	ATTAAA	-26	NA	72036589	72028561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr12_-_72028865_72036258
transcript_19917.known	chr12	-	551	1	FSM	ENSMUSG00000114155.2	ENSMUST00000221336.2	551	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTCAGCATAAAATAAATAC	NA	False	NA	NA	False	AAGAAA	-34	NA	72096033	72095482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_72095500_72096000
transcript_19918.known	chr12	-	3150	1	FSM	ENSMUSG00000043398.6	ENSMUST00000050649.6	3150	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAAGATGTTTTGTTTTGT	NA	False	NA	-5	True	AATACA	-19	NA	72117899	72114749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_72114700_72117900
transcript_19920.known	chr12	-	1831	5	FSM	ENSMUSG00000019718.9	ENSMUST00000019862.3	1831	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	3.20156211871642	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAAAGGAGTCAACTTCT	NA	False	NA	NA	False	CATAAA	-14	NA	72132213	72120201	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_72120811_72123917_72124056_72124137_72124261_72126260_72126431_72131422
transcript_19934.known	chr12	+	1874	7	FSM	ENSMUSG00000005078.17	ENSMUST00000117449.8	1874	7	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_1	199.890525593942	789	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCATGTTCTGATAATTCT	NA	False	NA	14	True	AATAAA	-20	NA	72132630	72148235	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_72132958_72136106_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
transcript_19935.known	chr12	-	1008	7	FSM	ENSMUSG00000021087.19	ENSMUST00000137990.2	1008	7	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	4.27200187265877	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAGA	NA	False	NA	NA	False	ACTAAA	-42	NA	72283498	72259062	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_72259352_72263544_72263604_72263688_72263736_72264192_72264263_72266030_72266170_72270105_72270314_72283302
transcript_19937.nic	chr12	+	1392	9	ISM	ENSMUSG00000021090.17	ENSMUST00000161957.2	2520	16	-7	14130	0	5314	5prime_fragment	FALSE	canonical	2	5	junction_7	3.31426839589071	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCGAGAGTTGAGCTCAGT	NA	False	NA	NA	False	AATAAA	-15	NA	72489015	72506854	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_72489245_72496093_72496175_72496421_72496641_72497450_72497592_72497998_72498063_72498736_72498808_72500818_72501002_72502756_72502913_72506606
transcript_19939.known	chr12	+	4300	11	FSM	ENSMUSG00000034501.8	ENSMUST00000044352.8	4300	11	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	24.633513756669	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTCTTTGTGTTTAGA	NA	False	NA	NA	False	AATAAA	-16	NA	72583156	72626893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_72583314_72588148_72588892_72602210_72602391_72602617_72603133_72603356_72603458_72603574_72603695_72613670_72614035_72616491_72616596_72620263_72621277_72622127_72622315_72626077
transcript_19943.nic	chr12	+	708	2	ISM	ENSMUSG00000034501.8	ENSMUST00000044352.8	4300	11	-62	38256	-62	-38256	5prime_fragment	FALSE	canonical	3	96	junction_1	0	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGGGCTAGTGTGTGG	NA	False	NA	17	True	AATACA	-16	NA	72583094	72588637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_72583314_72588148
transcript_19944.nic	chr12	+	1076	2	ISM	ENSMUSG00000034501.8	ENSMUST00000044352.8	4300	11	-62	37888	-62	-37888	5prime_fragment	FALSE	canonical	3	96	junction_1	0	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTGGGAGAGTTAGGTTA	NA	False	NA	NA	False	ATTAAA	-14	NA	72583094	72589005	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_72583314_72588148
transcript_19946.known	chr12	-	1385	7	FSM	ENSMUSG00000021094.11	ENSMUST00000021512.11	1385	7	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_1	5.61990510002912	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAGACTGCAGACTTAGA	NA	False	NA	43	True	AATAAA	-16	NA	72711683	72697126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_72697392_72699008_72699225_72699874_72699998_72703073_72703314_72704101_72704209_72706117_72706271_72711402
transcript_19949.known	chr12	-	1308	7	FSM	ENSMUSG00000021094.11	ENSMUST00000221750.2	1308	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	42.7528426605244	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAGACTGCAGACTTAGA	NA	False	NA	43	True	AATAAA	-16	NA	72711528	72697126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_72697392_72699008_72699225_72699874_72699998_72703073_72703314_72704101_72704209_72706039_72706271_72711402
transcript_19958.nnic	chr12	+	2204	7	NNC	ENSMUSG00000021096.12	novel	1103	3	NA	NA	-23162	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	166.029113912791	288	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAATCATGTATGCGTGAT	NA	False	NA	NA	False	AATAAA	-23	NA	72781066	72841338	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_72781169_72782668_72782779_72830456_72831311_72833445_72833564_72837406_72837516_72839551_72839610_72840485
transcript_19961.nnic	chr12	+	1805	4	NNC	ENSMUSG00000021096.12	novel	1103	3	NA	NA	-23162	-1990	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	192.101246453241	231	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGCAATGCATTTAAG	NA	False	NA	NA	False	NA	NA	NA	72781066	72834184	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_72781169_72782668_72782779_72830456_72831311_72833445
transcript_19964.known	chr12	-	2051	18	FSM	ENSMUSG00000021098.15	ENSMUST00000044000.12	2051	18	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_10	9.78559070609067	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGTTGAATTATTTGATT	NA	False	NA	NA	False	ATTAAA	-15	NA	72964680	72927882	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_72928199_72931996_72932055_72936481_72936621_72939577_72939754_72941757_72941820_72945260_72945308_72945483_72945570_72949186_72949264_72949989_72950109_72952964_72953054_72954594_72954716_72956544_72956588_72956677_72956866_72959958_72960049_72962129_72962257_72963447_72963505_72963596_72963654_72964481
transcript_20.known	ERCC-00043	+	1007	1	FSM	ERCC-00043A	DQ516787	1007	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	465	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	TATAAA	-12	NA	0	1007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00043_+_0_1000
transcript_20010.nic	chr12	-	2089	5	ISM	ENSMUSG00000021098.15	ENSMUST00000044000.12	2051	18	-33	30550	-33	0	5prime_fragment	FALSE	canonical	3	18	junction_2	8.16624148553054	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTATGGGTATTTTGCCT	NA	False	NA	NA	False	AATAAA	-21	NA	72964713	72958432	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_-_72960049_72962129_72962257_72963447_72963505_72963596_72963654_72964481
transcript_20011.nic	chr12	-	2020	5	ISM	ENSMUSG00000021098.15	ENSMUST00000131033.8	1939	8	-91	5425	-42	0	5prime_fragment	FALSE	canonical	3	10	junction_4	10.280442597476	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTATGGGTATTTTGCCT	NA	False	NA	NA	False	AATAAA	-21	NA	72964722	72958432	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_-_72960049_72962129_72962257_72963447_72963505_72963596_72963654_72964559
transcript_20013.nic	chr12	-	697	5	ISM	ENSMUSG00000021098.15	ENSMUST00000044000.12	2051	18	-33	31942	-33	136	5prime_fragment	FALSE	canonical	3	18	junction_2	8.16624148553054	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGCCTATTATAAATTCC	NA	False	NA	NA	False	AGTAAA	-24	NA	72964713	72959824	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_-_72960049_72962129_72962257_72963447_72963505_72963596_72963654_72964481
transcript_20014.nic	chr12	-	628	5	ISM	ENSMUSG00000021098.15	ENSMUST00000131033.8	1939	8	-91	6817	-42	136	5prime_fragment	FALSE	canonical	3	10	junction_4	10.280442597476	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGCCTATTATAAATTCC	NA	False	NA	NA	False	AGTAAA	-24	NA	72964722	72959824	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_-_72960049_72962129_72962257_72963447_72963505_72963596_72963654_72964559
transcript_20021.nic	chr12	-	560	4	NIC	ENSMUSG00000021098.15	novel	2051	18	NA	NA	-33	126	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	9.42809041582063	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTGTTAAGTCTGCCTAT	NA	False	NA	NA	False	AGTAAA	-14	NA	72964713	72959834	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_-_72960049_72963447_72963505_72963596_72963654_72964481
transcript_20023.nic	chr12	-	491	4	NIC	ENSMUSG00000021098.15	novel	1939	8	NA	NA	-42	126	combination_of_known_junctions	FALSE	canonical	3	10	junction_3	11.7756811551038	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTGTTAAGTCTGCCTAT	NA	False	NA	NA	False	AGTAAA	-14	NA	72964722	72959834	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_-_72960049_72963447_72963505_72963596_72963654_72964559
transcript_20026.known	chr12	-	3316	2	FSM	ENSMUSG00000051367.9	ENSMUST00000050029.8	3316	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCGTATTGTTTTTGACC	8595	False	NA	NA	False	AATATA	-14	NA	73093953	73088600	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_73090604_73092640
transcript_20027.known	chr12	-	6817	3	FSM	ENSMUSG00000034460.10	ENSMUST00000175693.3	6817	3	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_2	8.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGATTCACTCCACATCCC	NA	False	NA	NA	False	NA	NA	NA	73160230	73150214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_73156124_73159116_73159932_73160137
transcript_20041.known	chr12	+	1294	7	FSM	ENSMUSG00000021103.13	ENSMUST00000189644.7	1294	7	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	149.362813310409	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTTTTGTGGGATTTTTT	NA	False	NA	6	True	AATAAA	-16	NA	73170490	73319625	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_73170701_73214773_73214927_73225978_73226083_73228557_73228699_73234913_73235040_73265794_73265917_73319187
transcript_20043.nic	chr12	-	1781	6	NIC	ENSMUSG00000034442.12	novel	2066	5	NA	NA	-29	83	combination_of_known_junctions	FALSE	canonical	2	6	junction_5	42.8205558114324	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGATATTGTATAGACTG	NA	False	NA	-12	True	AGTAAA	-16	NA	73333513	73327171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_-_73327407_73327778_73328431_73329385_73329511_73331408_73332050_73332677_73332750_73333457
transcript_20047.known	chr12	-	2066	5	FSM	ENSMUSG00000034442.12	ENSMUST00000116420.4	2066	5	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	19.266226926931	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGTAATTCAAGGTATTT	NA	False	NA	-6	True	AATAAA	-21	NA	73333483	73326784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_73327407_73327778_73328431_73329385_73329511_73331408_73332050_73333457
transcript_2006.known	chr1	-	1796	13	FSM	ENSMUSG00000026034.18	ENSMUST00000034868.14	1796	13	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_9	59.1577458063514	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGTCTATAGCTTGGTG	NA	False	NA	-12	True	AATAAA	-20	NA	58463225	58451158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456171_58456339_58456425_58456543_58458825_58458893_58459279_58459371_58460241_58460468_58460932_58461094_58463078
transcript_20060.nic	chr12	-	1117	4	NIC	ENSMUSG00000034442.12	novel	2066	5	NA	NA	-89	83	combination_of_known_junctions	FALSE	canonical	3	20	junction_1	38.0029238641216	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGATATTGTATAGACTG	NA	False	NA	-12	True	AGTAAA	-16	NA	73333573	73327171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_-_73327407_73329385_73329511_73331408_73332050_73333457
transcript_2007.known	chr1	-	1705	12	FSM	ENSMUSG00000026034.18	ENSMUST00000148330.8	1705	12	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_9	47.751422461613	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGTCTATAGCTTGGTG	NA	False	NA	-12	True	AATAAA	-20	NA	58463225	58451158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456171_58456339_58456425_58456543_58458825_58458893_58460241_58460468_58460932_58461094_58463078
transcript_20074.known	chr12	+	3032	16	FSM	ENSMUSG00000044712.16	ENSMUST00000140523.8	3032	16	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_10	3.76769897358528	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGCTGGTTTTTTTTTA	NA	False	NA	8	True	NA	NA	NA	73333552	73400823	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_73333807_73335166_73335298_73338933_73339008_73356918_73356972_73365750_73365791_73376753_73376833_73383795_73383879_73384283_73384343_73388181_73388248_73388480_73388535_73390442_73390523_73391566_73391668_73397287_73397413_73398524_73398670_73398852_73398948_73399230
transcript_2008.known	chr1	-	1538	11	FSM	ENSMUSG00000026034.18	ENSMUST00000151338.8	1538	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_6	69.2961759406679	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGTCTATAGCTTGGTG	NA	False	NA	-12	True	AATAAA	-20	NA	58463225	58451158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456425_58456543_58458825_58458893_58460241_58460468_58460932_58461094_58463078
transcript_20080.nic	chr12	+	613	4	ISM	ENSMUSG00000044712.16	ENSMUST00000126488.8	589	5	65	25088	-2	-18254	5prime_fragment	FALSE	canonical	3	5	junction_3	3.09120616516523	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAATGTTTTTGTTTTGGT	NA	False	NA	NA	False	AAAAAG	-20	NA	73333628	73340702	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_73333807_73335166_73335298_73338933_73339008_73340472
transcript_20083.nnic	chr12	-	739	2	NNC	ENSMUSG00000087700.3	novel	818	3	NA	NA	-103	10611	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAAGGTCATCAATTATGC	NA	False	NA	NA	False	GATAAA	-18	NA	73996691	73962643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_73963089_73996397
transcript_20084.nnic	chr12	-	703	2	NIC	ENSMUSG00000087700.3	novel	1451	7	NA	NA	-78	160	combination_of_known_splicesites	FALSE	canonical	3	9	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAACATTTCCAAAGCAGA	NA	False	NA	NA	False	AATAAA	-26	NA	73996666	73973094	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_-_73973529_73996397
transcript_20087.known	chr12	-	1451	7	FSM	ENSMUSG00000087700.3	ENSMUST00000125308.3	1451	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.372677996249965	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCCCTGTTTACTGTAT	NA	False	NA	NA	False	AATAAA	-11	NA	73996559	73973254	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_73973529_73975596_73975875_73977189_73977305_73979099_73979239_73980276_73980376_73981402_73981787_73996397
transcript_20088.known	chr12	+	4724	15	FSM	ENSMUSG00000021109.14	ENSMUST00000021530.8	4724	15	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_10	63.740545517411	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCATATCTTTCTAGTTC	8358	False	NA	11	True	AATAAA	-22	NA	73954677	73994304	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_73955099_73973330_73973522_73974759_73974906_73974987_73975073_73977430_73977544_73979047_73979251_73982963_73983071_73984426_73984575_73986302_73986524_73987121_73987406_73988461_73988627_73988734_73989160_73990852_73990962_73991684_73991812_73992325
transcript_2009.known	chr1	-	456	2	FSM	ENSMUSG00000026034.18	ENSMUST00000147258.2	456	2	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATACTACCTATACACACA	NA	False	NA	NA	False	NA	NA	NA	58463225	58460784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_58461094_58463078
transcript_20092.nic	chr12	+	1828	11	NIC	ENSMUSG00000021113.6	novel	6275	10	NA	NA	8	284	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	32.0337322208949	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCTAGTGTGTGAAATTT	NA	False	NA	9	True	AATAAA	-21	NA	74011262	74031165	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_74011521_74014120_74014212_74014681_74014842_74015012_74015154_74016300_74016406_74016954_74017114_74018658_74018728_74019310_74019374_74021784_74021936_74029251_74029354_74030636
transcript_20095.known	chr12	+	6275	10	FSM	ENSMUSG00000021113.6	ENSMUST00000021532.6	6275	10	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	11.7473401244707	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTTTTATTTTTGAGA	NA	False	NA	NA	False	NA	NA	NA	74011299	74035740	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_74011521_74014681_74014842_74015012_74015154_74016300_74016406_74016954_74017114_74018658_74018728_74019310_74019374_74021784_74021936_74029251_74029354_74030636
transcript_20098.nnic	chr12	+	1669	9	NIC	ENSMUSG00000021113.6	novel	6275	10	NA	NA	-29	284	combination_of_known_splicesites	FALSE	canonical	3	4	junction_3	28.297250308113	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCTAGTGTGTGAAATTT	NA	False	NA	9	True	AATAAA	-21	NA	74011225	74031165	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_74011521_74014681_74014842_74015012_74015154_74016954_74017114_74018658_74018728_74019310_74019374_74021784_74021936_74029251_74029354_74030636
transcript_20101.nic	chr12	+	1043	4	ISM	ENSMUSG00000021113.6	ENSMUST00000021532.6	6275	10	-74	18993	-29	1974	5prime_fragment	FALSE	canonical	3	65	junction_3	14.8174071805952	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAGAAAAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	74011225	74016747	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_74011521_74014681_74014842_74015012_74015154_74016300
transcript_20102.known	chr12	+	795	4	FSM	ENSMUSG00000071265.11	ENSMUST00000186463.7	795	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGTTAAGTTCATTGAT	NA	False	NA	NA	False	ATTAAA	-4	NA	74331054	74342705	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_74331231_74332288_74332413_74342096_74342213_74342326
transcript_20103.nnic	chr12	-	708	3	NNC	ENSMUSG00000113031.2	novel	636	3	NA	NA	8	456	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	10	162	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATGACTAAAAGTGTGAGT	NA	False	NA	NA	False	AATAAA	-28	NA	74363928	74360518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_74360907_74362065_74362187_74363729
transcript_20105.nnic	chr12	-	2431	3	NNC	ENSMUSG00000045690.9	novel	2381	3	NA	NA	-137	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	74	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGGTATCTTGTCTTAT	6273	False	NA	0	True	AATAAA	-19	NA	75716448	75677367	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_75677655_75678341_75680283_75716245
transcript_20106.nnic	chr12	-	2299	3	NNC	ENSMUSG00000045690.9	novel	2381	3	NA	NA	-8	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	74	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGGTATCTTGTCTTAT	6402	False	NA	0	True	AATAAA	-19	NA	75716319	75677367	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_75677662_75678351_75680283_75716245
transcript_20107.known	chr12	-	2979	2	FSM	ENSMUSG00000045690.9	ENSMUST00000062370.9	2979	2	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_1	0	33393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTGGGTATCTTGTCTT	6410	False	NA	-2	True	AATAAA	-17	NA	75716311	75677369	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_75680283_75716245
transcript_20109.known	chr12	-	348	1	FSM	ENSMUSG00000118552.2	ENSMUST00000238938.2	348	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12818	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCTGCTCCCCTGCAAAT	NA	False	NA	-80	True	NA	NA	NA	75678092	75677744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_75677700_75678100
transcript_20110.known	chr12	+	1624	8	FSM	ENSMUSG00000063450.15	ENSMUST00000133623.8	1624	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	0.989743318610787	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGACCGTTTTTATATGGA	NA	False	NA	NA	False	ATTAAA	-13	NA	75865096	75937823	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_75865253_75900794_75900922_75925107_75925170_75926886_75926983_75927092_75927171_75927258_75927352_75934927_75935116_75936999
transcript_20116.nnic	chr12	-	1241	5	NNC	ENSMUSG00000021056.9	novel	1980	9	NA	NA	12483	0	at_least_one_novel_splicesite	TRUE	canonical	3	7	junction_2	10.4163333279998	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATAGATGGTTTGAACTA	1129	False	NA	NA	False	AATAAA	-20	NA	76263755	76250759	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_76251085_76253561_76253769_76259148_76259332_76261186_76261493_76263535
transcript_20121.nnic	chr12	-	944	4	NNC	ENSMUSG00000021056.9	novel	2137	10	NA	NA	12480	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	13.9283882771841	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTCTCTCCTGTGCTTG	1126	False	NA	NA	False	AATAAA	-24	NA	76263758	76245459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_76245726_76259148_76259332_76261186_76261493_76263569
transcript_20125.nnic	chr12	-	701	3	NNC	ENSMUSG00000021056.9	novel	1980	9	NA	NA	12543	2197	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	16.5	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCTTGTACTAGTTATAT	1189	False	NA	NA	False	ACTAAA	-1	NA	76263695	76259062	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_76259332_76261186_76261493_76263569
transcript_20127.known	chr12	+	3241	28	FSM	ENSMUSG00000021048.8	ENSMUST00000021443.7	3241	28	0	0	0	0	multi-exon	TRUE	canonical	3	837	junction_20	135.484134190258	812	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGGTGTTGAAACATAAA	7911	False	NA	9	True	AATAAA	-17	NA	76302071	76366577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
transcript_20130.known	chr12	+	3040	27	FSM	ENSMUSG00000021048.8	ENSMUST00000220046.2	3040	27	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	281.366814005612	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTTGGTGTTGAAACATAA	8026	False	NA	8	True	AATAAA	-16	NA	76302186	76366576	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_76302319_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
transcript_20137.known	chr12	-	773	1	FSM	ENSMUSG00000112274.2	ENSMUST00000220205.2	773	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATTACTTGTTTAATCGA	4877	False	NA	NA	False	NA	NA	NA	76302108	76301335	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_76301300_76302100
transcript_20141.known	chr12	-	488	3	FSM	ENSMUSG00000056459.15	ENSMUST00000176187.8	488	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	42	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAACAAGGGCTGGAGATC	NA	False	NA	NA	False	AAAACA	-5	NA	76416167	76396799	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_76397048_76402662_76402843_76416107
transcript_20142.known	chr12	-	1672	3	FSM	ENSMUSG00000056459.15	ENSMUST00000176278.8	1672	3	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_2	3	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTATGAGCTTTTCTATA	NA	False	NA	-2	True	ATTAAA	-16	NA	76416376	76395718	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_76397048_76402662_76402843_76416213
transcript_20148.known	chr12	+	2526	1	FSM	ENSMUSG00000059970.8	ENSMUST00000219555.2	2526	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATTGCTGTCTGGCGTTT	NA	False	NA	NA	False	AGTAAA	-16	NA	76451182	76453708	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_76451200_76453700
transcript_20149.known	chr12	+	1515	11	FSM	ENSMUSG00000052221.9	ENSMUST00000063977.9	1515	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	1.57797338380595	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTCCTACTCGTACAAG	NA	False	NA	NA	False	AATAAA	-27	NA	76464311	76486266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_76464491_76465701_76465767_76473522_76473610_76474658_76474757_76474853_76474921_76475608_76475708_76482916_76483052_76484369_76484413_76484729_76484909_76485138_76485328_76485892
transcript_20154.nic	chr12	+	1166	3	ISM	ENSMUSG00000073000.4	ENSMUST00000101281.3	1598	4	-75	820	-12	1	intron_retention	FALSE	canonical	2	4	junction_2	20	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGCCTCAGTCGTGGTG	NA	False	NA	11	True	NA	NA	NA	76491258	76497290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_76491440_76494748_76494928_76496484
transcript_20156.known	chr12	+	855	2	FSM	ENSMUSG00000073000.4	ENSMUST00000219367.2	855	2	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAAGTCCTGGCACCTCC	NA	False	NA	NA	False	AAAACA	-19	NA	76491270	76495434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_76491440_76494748
transcript_2016.known	chr1	-	1033	7	FSM	ENSMUSG00000026035.16	ENSMUST00000114348.8	1033	7	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_6	35.853482707015	427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGTGTCCTTTTTTTTA	NA	False	NA	1	True	AATAGA	-28	NA	58484593	58470152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484304
transcript_20163.known	chr12	-	970	1	FSM	ENSMUSG00000112388.2	ENSMUST00000217839.2	970	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCCGCGTGTGGGTCACA	2887	False	NA	NA	False	NA	NA	NA	76594717	76593747	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_76593700_76594700
transcript_20164.known	chr12	+	2613	12	FSM	ENSMUSG00000033373.17	ENSMUST00000041008.10	2613	12	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_4	27.7548298231568	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCTGTCTTTTTTTTTTC	NA	False	NA	14	True	AATAAA	-15	NA	76884187	76968186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_76884426_76909259_76909325_76920149_76920223_76921805_76921898_76934505_76934653_76934745_76934830_76944100_76944188_76953718_76953849_76956984_76957118_76961393_76961506_76963187_76963303_76966849
transcript_20171.nnic	chr12	+	1188	6	NNC	ENSMUSG00000033373.17	novel	384	2	NA	NA	-7636	132	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_1	113.544000281829	92	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACGGTGGTGTGATTTTT	9953	False	NA	NA	False	AAAACA	-24	NA	76948623	76967137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_76949034_76953718_76953849_76956984_76957118_76961393_76961506_76963187_76963303_76966849
transcript_20172.nnic	chr12	+	2237	6	NNC	ENSMUSG00000033373.17	novel	384	2	NA	NA	-7636	0	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_1	113.544000281829	227	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCTGTCTTTTTTTTTTC	9953	False	NA	14	True	AATAAA	-15	NA	76948623	76968186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_76949034_76953718_76953849_76956984_76957118_76961393_76961506_76963187_76963303_76966849
transcript_20178.nic	chr12	+	747	3	ISM	ENSMUSG00000033373.17	ENSMUST00000041008.10	2613	12	-14	47607	-14	-14000	5prime_fragment	FALSE	canonical	3	303	junction_1	1.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCAAAAAAACAACCAAACCA	NA	False	NA	NA	False	NA	NA	NA	76884173	76920579	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_76884426_76909259_76909325_76920149
transcript_20180.known	chr12	+	370	2	FSM	ENSMUSG00000033373.17	ENSMUST00000151864.2	370	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGTCTCCTTTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	76884206	76891463	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_76884426_76891312
transcript_20185.known	chr12	+	462	3	FSM	ENSMUSG00000090258.8	ENSMUST00000126408.2	462	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	247.5	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATAAATAAATAAATCTTT	NA	False	NA	-52	True	NA	NA	NA	76812328	76829893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_76812413_76822367_76822439_76829586
transcript_20188.known	chr12	+	676	4	FSM	ENSMUSG00000090258.8	ENSMUST00000041262.14	676	4	0	0	0	0	multi-exon	FALSE	canonical	3	492	junction_2	1.88561808316413	4080	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTGTATGTTTTCTTTT	NA	False	NA	9	True	AATGAA	-3	NA	76812311	76829954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_76812413_76820031_76820168_76822367_76822439_76829586
transcript_20189.known	chr12	+	535	3	FSM	ENSMUSG00000090258.8	ENSMUST00000110399.3	535	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	248	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCAAGCCTAATGGTTTGT	NA	False	NA	-24	True	NA	NA	NA	76812348	76829921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_76812413_76820031_76820168_76829586
transcript_20191.known	chr12	-	1010	2	FSM	ENSMUSG00000042808.11	ENSMUST00000082431.6	1010	2	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	0	1122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCCTGGGTCTCTGTCTTC	NA	False	NA	-5	True	AATAAA	-16	NA	76842273	76839110	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_76839775_76841927
transcript_20192.known	chr12	-	797	2	FSM	ENSMUSG00000021062.16	ENSMUST00000143863.2	797	2	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCCCTCCCCTCCCTTGTA	NA	False	NA	NA	False	NA	NA	NA	76847608	76846647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_76847176_76847339
transcript_20195.nic	chr12	-	2089	5	NIC	ENSMUSG00000059436.14	novel	1926	4	NA	NA	-76	2	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	27.5714979643834	1557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGTAGTAGTGTCTTCTT	NA	False	NA	-3	True	AATAAA	-17	NA	77009051	76984045	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_-_76985530_76986203_76986289_76986740_76986865_76999942_77000051_77008763
transcript_20199.known	chr12	-	1942	5	FSM	ENSMUSG00000059436.14	ENSMUST00000110395.11	1942	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	22.1697992773954	1535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAGTAGTGTCTTCTTAAC	NA	False	NA	0	True	AATAAA	-20	NA	77008959	76984042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_76985530_76986740_76986865_76999942_77000051_77008036_77008064_77008763
transcript_20204.nic	chr12	-	2763	4	NIC	ENSMUSG00000059436.14	novel	1926	4	NA	NA	-76	2	intron_retention	FALSE	canonical	3	20	junction_1	20.7257220756131	1531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGTAGTAGTGTCTTCTT	NA	False	NA	-3	True	AATAAA	-17	NA	77009051	76984045	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_-_76986289_76986740_76986865_76999942_77000051_77008763
transcript_20205.known	chr12	-	1926	4	FSM	ENSMUSG00000059436.14	ENSMUST00000082136.7	1926	4	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	8.28653526310404	1713	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCGGTAGTAGTGTCTTC	NA	False	NA	-5	True	AATAAA	-15	NA	77008975	76984047	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_76985530_76986740_76986865_76999942_77000051_77008763
transcript_20209.known	chr12	-	752	4	FSM	ENSMUSG00000059436.14	ENSMUST00000218640.2	752	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	20.0499376557634	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGTCCTCCCTCACCTCT	NA	False	NA	NA	False	NA	NA	NA	77008799	76984964	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_76985530_76986740_76986865_77008036_77008064_77008763
transcript_20213.known	chr12	+	2765	12	FSM	ENSMUSG00000021065.17	ENSMUST00000171770.10	2765	12	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	20.7412233753807	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTCCATTAGGAAGTTTT	NA	False	NA	-94	True	AATAAA	-36	NA	77284921	77522656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_77284974_77324134_77324230_77370618_77370712_77378669_77379104_77411742_77411859_77411970_77412134_77440496_77440612_77459485_77459724_77495246_77495494_77496873_77497051_77510833_77510985_77521772
transcript_20214.known	chr12	+	3358	12	FSM	ENSMUSG00000021065.17	ENSMUST00000062804.8	3358	12	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	14.8022781360346	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTTGTGTGGTGGCATCT	NA	False	NA	NA	False	TATAAA	-13	NA	77285838	77523112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_77286028_77324134_77324230_77370618_77370712_77378669_77379104_77411742_77411859_77411970_77412134_77440496_77440612_77459485_77459724_77495246_77495494_77496873_77497051_77510833_77510985_77521772
transcript_20222.nnic	chr12	+	1739	4	NNC	ENSMUSG00000112392.2	novel	661	2	NA	NA	-20	69707	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	4.92160768674447	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATAATTGGTTTCCTTTGA	NA	False	NA	NA	False	NA	NA	NA	77600100	77686190	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_77600570_77616271_77616486_77684209_77684294_77685218
transcript_20231.nnic	chr12	+	1166	3	NNC	ENSMUSG00000112392.2	novel	661	2	NA	NA	-227	86729	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	2.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTGGTCGTGTTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	77599893	77703212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_77600570_77684209_77684294_77702806
transcript_20232.known	chr12	+	661	2	FSM	ENSMUSG00000112392.2	ENSMUST00000218335.2	661	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTAAGTTCATCTACCCCC	NA	False	NA	NA	False	NA	NA	NA	77600120	77616483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_77600570_77616271
transcript_20233.known	chr12	+	3300	23	FSM	ENSMUSG00000047454.13	ENSMUST00000110388.10	3300	23	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_9	13.5066558431803	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGTATTGTGCGGCCT	NA	False	NA	21	True	AATAAA	-24	NA	78273426	78731541	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_78273616_78390125_78390205_78423133_78423192_78459114_78459208_78501530_78501626_78528072_78528140_78538811_78539085_78540723_78540832_78551390_78551526_78609629_78609673_78637307_78637446_78655918_78656012_78659745_78659802_78670077_78670198_78672907_78672967_78673880_78674035_78684231_78684354_78701580_78701669_78711264_78711339_78716597_78716663_78727064_78727169_78729491_78729589_78730551
transcript_20237.nnic	chr12	+	1210	10	NNC	ENSMUSG00000047454.13	novel	3300	23	NA	NA	43	-175642	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	23.5235631801681	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTTCTTGGATCATT	NA	False	NA	NA	False	AATAAA	-15	NA	78273469	78555225	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_78273616_78390125_78390205_78423133_78423192_78459114_78459208_78501530_78501626_78528072_78528140_78538811_78539085_78540723_78540832_78551390_78551526_78555069
transcript_20238.known	chr12	+	5283	15	FSM	ENSMUSG00000021112.10	ENSMUST00000219197.2	5283	15	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_6	36.460840049879	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCCACTGGACACTTTC	NA	False	NA	16	True	AATAAA	-25	NA	78795680	78887360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_78795720_78841018_78841108_78843639_78844165_78856525_78856735_78864014_78864093_78864398_78864546_78865960_78866140_78867581_78867660_78871462_78871647_78872630_78872703_78873034_78873107_78876426_78876595_78877626_78877830_78879138_78879250_78884231
transcript_20241.known	chr12	+	5470	15	FSM	ENSMUSG00000021112.10	ENSMUST00000082024.7	5470	15	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	32.6002378856977	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGGGTGTCCTTTATTGG	NA	False	NA	NA	False	AATACA	-15	NA	78795765	78887488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_78795881_78841018_78841108_78843639_78844165_78856525_78856735_78864014_78864093_78864398_78864546_78865977_78866140_78867581_78867660_78871462_78871647_78872630_78872703_78873034_78873107_78876426_78876595_78877626_78877830_78879138_78879250_78884231
transcript_20257.known	chr12	-	1583	9	FSM	ENSMUSG00000021118.8	ENSMUST00000021544.8	1583	9	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_6	8.60868021243675	163	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTATGGTTCTTGTAGTTA	NA	False	NA	0	True	AATAAA	-21	NA	78953738	78935464	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_78936082_78936685_78936765_78938902_78938987_78940850_78940953_78941161_78941350_78941646_78941739_78942905_78943088_78946828_78946994_78953664
transcript_2026.known	chr1	-	1363	7	FSM	ENSMUSG00000026035.16	ENSMUST00000117069.8	1363	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_6	68.4505092911822	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGTGTCCTTTTTTTTA	NA	False	NA	1	True	AATAGA	-28	NA	58484588	58470152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58483969
transcript_20268.known	chr12	-	2339	4	FSM	ENSMUSG00000021120.12	ENSMUST00000072154.9	2339	4	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	16.0485374896143	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGGACTTGTTTTTTTAT	NA	False	NA	-1	True	AATAAA	-30	NA	79136425	79127437	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_79129271_79130389_79130474_79132420_79132631_79136213
transcript_20275.known	chr12	-	2868	3	FSM	ENSMUSG00000021120.12	ENSMUST00000217998.2	2868	3	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	16.5	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAGAAAGGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79136419	79128021	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_79130474_79132420_79132631_79136213
transcript_20283.known	chr12	-	1059	5	FSM	ENSMUSG00000021124.14	ENSMUST00000162789.9	1059	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	311.173183291877	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGTTTTACAGTTGTGAG	NA	False	NA	84	True	AATACA	-36	NA	79219222	79202943	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_79203346_79204621_79204684_79207182_79207357_79211721_79211914_79218993
transcript_20286.known	chr12	+	1428	8	FSM	ENSMUSG00000021125.7	ENSMUST00000021550.7	1428	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.728431359084683	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTCTTGTTGCTGTTCCT	9088	False	NA	NA	False	CATAAA	-28	NA	79177550	79203075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_79177755_79178614_79178688_79194361_79194540_79196642_79196803_79197505_79197601_79197726_79197832_79198695_79198833_79202599
transcript_20287.known	chr12	-	1490	6	FSM	ENSMUSG00000021124.14	ENSMUST00000055262.13	1490	6	0	0	0	0	multi-exon	FALSE	canonical	3	652	junction_4	37.0534748707864	1194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTCATTTTCTGATTCGT	NA	False	NA	NA	False	NA	NA	NA	79219441	79202790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_79203346_79204621_79204684_79207182_79207357_79211721_79211914_79213124_79213184_79218993
transcript_20289.known	chr12	-	3262	7	FSM	ENSMUSG00000066441.15	ENSMUST00000161204.8	3262	7	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_5	13.7113092008021	242	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTTATGGGGATATTGGA	NA	False	NA	-18	True	AATAAA	-40	NA	79239067	79221110	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_79223025_79229426_79229617_79231897_79232108_79233187_79233293_79235254_79235411_79235762_79235882_79238499
transcript_2029.known	chr1	-	896	7	FSM	ENSMUSG00000026035.16	ENSMUST00000081677.12	896	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_6	63.3151289626386	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGTGAGTGTCCTTTTTT	NA	False	NA	-2	True	AATAGA	-25	NA	58484645	58470155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484490
transcript_20292.known	chr12	+	1678	7	FSM	ENSMUSG00000021123.13	ENSMUST00000021548.12	1678	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	2.5	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGGTGTCTTTTCTCAG	375	False	NA	NA	False	AATAAA	-19	NA	79255687	79269439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_79255883_79257614_79257734_79258161_79258318_79259426_79259532_79260317_79260528_79265449_79265640_79268736
transcript_2030.nic	chr1	-	910	7	NIC	ENSMUSG00000026035.16	novel	896	7	NA	NA	-54	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	73.5974410787042	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGTGAGTGTCCTTTTTT	NA	False	NA	-2	True	AATAGA	-25	NA	58484699	58470155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484530
transcript_20303.known	chr12	+	1858	11	FSM	ENSMUSG00000059060.16	ENSMUST00000171210.3	1858	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	20.7848502520466	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCCAAAGCTGGGCCACT	8644	False	NA	NA	False	AATAAA	-26	NA	79344055	79861464	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_79344107_79347315_79347422_79349249_79349364_79350105_79350223_79361605_79361743_79371740_79371861_79373994_79374179_79704597_79704695_79813844_79813949_79849963_79850043_79860715
transcript_20304.known	chr12	-	2990	2	FSM	ENSMUSG00000021127.8	ENSMUST00000021552.3	2990	2	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_1	0	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTGTCTATAGGTTTTT	9167	False	NA	92	True	AATAAA	-18	NA	80159787	80154527	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_80157323_80159592
transcript_20305.known	chr12	-	1399	3	FSM	ENSMUSG00000097729.3	ENSMUST00000180643.3	1399	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCCGAGCTTTTATTCTC	2356	False	NA	NA	False	TATAAA	-40	NA	80179618	80170765	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_80171901_80178587_80178734_80179500
transcript_20309.nnic	chr12	+	645	2	Genic_Genomic	ENSMUSG00000112278.2	novel	728	1	NA	NA	-88	0	multi-exon	FALSE	canonical	0	0	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAGGTCTTTTTTTATAT	1615	False	NA	NA	False	ATTAAA	-14	NA	80481894	80482710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr12_+_80482087_80482257
transcript_2031.nic	chr1	-	1165	7	NIC	ENSMUSG00000026035.16	novel	896	7	NA	NA	-347	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_6	60.3869467131212	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGTGAGTGTCCTTTTTT	NA	False	NA	-2	True	AATAGA	-25	NA	58484992	58470155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484568
transcript_20310.known	chr12	+	728	1	FSM	ENSMUSG00000112278.2	ENSMUST00000218555.2	728	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAGGTCTTTTTTTATAT	1703	False	NA	NA	False	ATTAAA	-14	NA	80481982	80482710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_80482000_80482700
transcript_20311.known	chr12	+	3310	9	FSM	ENSMUSG00000032705.10	ENSMUST00000038185.10	3310	9	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_6	24.0724816959116	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAGTGATTGTAAATGTG	2663	False	NA	22	True	AATAAA	-19	NA	80509868	80544896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_80510055_80522496_80522963_80527228_80527486_80531019_80531147_80536175_80536508_80537554_80537662_80537868_80538005_80539315_80539673_80543554
transcript_20315.nic	chr12	+	1268	3	ISM	ENSMUSG00000032705.10	ENSMUST00000038185.10	3310	9	100	16952	-25	1	5prime_fragment	FALSE	canonical	3	212	junction_2	10.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATGTGTATTGGTGTTT	2763	False	NA	NA	False	AAGAAA	-18	NA	80509968	80527944	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_80510055_80522496_80522963_80527228
transcript_20316.known	chr12	+	3922	15	FSM	ENSMUSG00000021130.9	ENSMUST00000021558.8	3922	15	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_3	4.40141442942968	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGATGCCTTTATTTCAG	NA	False	NA	9	True	AATAAA	-24	NA	80565763	80650672	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_80566120_80619072_80619231_80622632_80622732_80623275_80623344_80624161_80624228_80626738_80626861_80627995_80628084_80630423_80630509_80630786_80630891_80635232_80635360_80637368_80637462_80639174_80639259_80643854_80643997_80644791_80644918_80648468
transcript_20320.known	chr12	+	5201	7	FSM	ENSMUSG00000048833.10	ENSMUST00000085245.7	5201	7	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_2	10.9455724179028	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTATGTGAGTGGCTCTTT	NA	False	NA	12	True	ATTAAA	-17	NA	80691012	80730111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_80691751_80709243_80709353_80713308_80713510_80719999_80720069_80722622_80722709_80723905_80724041_80726248
transcript_20329.known	chr12	+	2155	6	FSM	ENSMUSG00000048833.10	ENSMUST00000217889.2	2155	6	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_2	11.4647285183732	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATACTGACTCTTCTGGTT	NA	False	NA	NA	False	AATAAA	-12	NA	80691283	80725128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_80691751_80709243_80709353_80713308_80713510_80719999_80720069_80722622_80722709_80723905
transcript_20342.known	chr12	-	506	5	FSM	ENSMUSG00000021131.15	ENSMUST00000166931.2	506	5	0	0	0	0	multi-exon	FALSE	canonical	3	979	junction_4	3763.79924411491	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTATGATAGCGATCCTG	NA	False	NA	NA	False	NA	NA	NA	80690606	80681130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_80681302_80684263_80684385_80687730_80687819_80689562_80689620_80690537
transcript_20343.known	chr12	-	944	2	FSM	ENSMUSG00000044062.8	ENSMUST00000153297.2	944	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATGGATATTTTATTTT	NA	False	NA	NA	False	ATTAAA	-26	NA	80739240	80733143	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_80733782_80738934
transcript_20344.known	chr12	+	956	2	FSM	ENSMUSG00000066438.7	ENSMUST00000153762.2	956	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACTGAATAGTTCCTCTG	NA	False	NA	NA	False	GATAAA	-15	NA	80768505	80769684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_80768870_80769092
transcript_20347.known	chr12	-	1118	3	FSM	ENSMUSG00000112880.2	ENSMUST00000219062.2	1118	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	3	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAACACTAACCAAAAC	NA	False	NA	NA	False	NA	NA	NA	80992170	80989446	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_80989717_80989815_80990004_80991510
transcript_20380.known	chr12	+	1489	9	FSM	ENSMUSG00000021134.18	ENSMUST00000110354.8	1489	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	756.029885322002	1849	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	AATAAA	-19	NA	80992293	80997277	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_80992355_80992375_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996490
transcript_20396.known	chr12	+	1568	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110356.3	1568	8	0	0	0	0	multi-exon	FALSE	canonical	3	562	junction_1	476.276244656911	3874	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	AATAAA	-19	NA	80992358	80997277	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_80992573_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
transcript_20397.known	chr12	+	2720	7	FSM	ENSMUSG00000021134.18	ENSMUST00000153056.8	2720	7	0	0	0	0	multi-exon	FALSE	canonical	3	307	junction_1	608.09467921442	594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	AATAAA	-19	NA	80992305	80997277	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_80992443_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80995943_80996267_80996379_80996493
transcript_20398.known	chr12	+	538	2	FSM	ENSMUSG00000021134.18	ENSMUST00000152662.2	538	2	0	0	0	0	multi-exon	FALSE	canonical	3	562	junction_1	0	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAGAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80992307	80993622	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_80992573_80993349
transcript_20399.known	chr12	+	1491	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110352.10	1491	8	0	0	0	0	multi-exon	FALSE	canonical	3	307	junction_1	564.545762863691	4709	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	AATAAA	-19	NA	80992305	80997277	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_80992443_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
transcript_20400.known	chr12	+	3482	4	FSM	ENSMUSG00000021134.18	ENSMUST00000151036.2	3482	4	0	0	0	0	multi-exon	FALSE	canonical	3	1874	junction_1	63.6867333123626	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAACTGCTTTTGGTCTG	NA	False	NA	NA	False	AATAAA	-13	NA	80993149	80997271	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_80994156_80994269_80994369_80994569_80995943_80996267
transcript_20401.known	chr12	+	886	6	FSM	ENSMUSG00000021134.18	ENSMUST00000125814.9	886	6	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_5	725.355195748952	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTGCTAATAGGGAGGGC	NA	False	NA	NA	False	AGTAAA	-20	NA	80992321	80995278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80994902
transcript_20410.nnic	chr12	+	3270	13	NNC	ENSMUSG00000021136.14	novel	3496	13	NA	NA	-7436	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	56.7330493529908	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGTGCCTCTTTCTTTGG	NA	False	NA	17	True	AATAAA	-19	NA	81066145	81233188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_81066271_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197392_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
transcript_20412.nnic	chr12	+	1745	13	NNC	ENSMUSG00000021136.14	novel	3496	13	NA	NA	-7436	-1488	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	43.9365072196991	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGATCTTTTGTACAGGCAT	NA	False	NA	NA	False	AAGAAA	-41	NA	81066145	81231696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_81066271_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197425_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
transcript_20414.nnic	chr12	+	3237	13	NNC	ENSMUSG00000021136.14	novel	3496	13	NA	NA	-7436	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	43.9365072196991	54	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGTGCCTCTTTCTTTGG	NA	False	NA	17	True	AATAAA	-19	NA	81066145	81233188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_81066271_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197425_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
transcript_20415.known	chr12	+	3496	13	FSM	ENSMUSG00000021136.14	ENSMUST00000110347.9	3496	13	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	48.9003379901975	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGTGCCTCTTTCTTTGG	NA	False	NA	17	True	AATAAA	-19	NA	81073581	81233188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_81073933_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197392_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
transcript_20416.known	chr12	+	3439	13	FSM	ENSMUSG00000021136.14	ENSMUST00000021564.11	3439	13	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	31.9699294476683	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCAGCTGGTGCCTCTTTCT	NA	False	NA	13	True	AATAAA	-15	NA	81073601	81233184	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_81073933_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197425_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
transcript_20420.nic	chr12	+	340	2	ISM	ENSMUSG00000021136.14	ENSMUST00000021564.11	3439	13	157031	1705	157031	-1705	3prime_fragment	FALSE	canonical	3	175	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTACGTGTGTGGTTTGT	NA	False	NA	NA	False	NA	NA	NA	81230632	81231479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_81230816_81231322
transcript_20424.nic	chr12	+	2049	2	ISM	ENSMUSG00000021136.14	ENSMUST00000021564.11	3439	13	157031	-4	157031	0	3prime_fragment	FALSE	canonical	3	175	junction_1	0	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGTGCCTCTTTCTTTGG	NA	False	NA	17	True	AATAAA	-19	NA	81230632	81233188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_81230816_81231322
transcript_20430.nic	chr12	-	756	5	NIC	ENSMUSG00000021139.18	novel	1043	6	NA	NA	-14	-164	combination_of_known_junctions	FALSE	canonical	3	34	junction_4	124.884696820707	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTTCTCAGTGTTCCAT	NA	False	NA	-44	True	AATAAA	-21	NA	81579693	81405797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_-_81406119_81521360_81521424_81527704_81527777_81551317_81551414_81579489
transcript_20434.nic	chr12	-	694	5	NIC	ENSMUSG00000021139.18	novel	2284	6	NA	NA	-14	-1490	combination_of_known_junctions	FALSE	canonical	3	34	junction_4	125.893556229062	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTATGCTTTTCAGTCT	NA	False	NA	-6	True	ATTAAA	-14	NA	81579693	81518866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_-_81519126_81521360_81521424_81527704_81527777_81551317_81551414_81579489
transcript_20435.known	chr12	-	421	4	FSM	ENSMUSG00000021139.18	ENSMUST00000171459.8	421	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_3	144.144217905387	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACATTCTCATTAGTCATG	NA	False	NA	NA	False	NA	NA	NA	81579651	81521332	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_81521424_81527704_81527777_81551317_81551414_81579489
transcript_20436.known	chr12	-	1043	6	FSM	ENSMUSG00000021139.18	ENSMUST00000164386.8	1043	6	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_3	83.1899032335054	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGAAATTGCTCTGTGTG	NA	False	NA	NA	False	AATAAA	-17	NA	81579679	81405633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_81406119_81521360_81521424_81527704_81527777_81551317_81551414_81557602_81557740_81579489
transcript_20442.known	chr12	-	298	4	FSM	ENSMUSG00000091803.8	ENSMUST00000163282.8	298	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	169.619836366178	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTGTATGCTTTTCAGT	1257	False	NA	-8	True	ATTAAA	-12	NA	81531625	81518868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_81518946_81521360_81521424_81527704_81527777_81531539
transcript_20444.known	chr12	-	458	4	FSM	ENSMUSG00000091803.8	ENSMUST00000171237.8	458	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	153.914117466708	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTATGCTTTTCAGTCT	1279	False	NA	-6	True	ATTAAA	-14	NA	81531603	81518866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_81519126_81521360_81521424_81527704_81527777_81531539
transcript_20447.known	chr12	-	668	4	FSM	ENSMUSG00000091803.8	ENSMUST00000110340.9	668	4	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_1	77.5127229699888	970	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATGTTCTCAGTGTTCC	998	False	NA	-46	True	AATAAA	-19	NA	81531884	81405799	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_81406119_81521360_81521424_81527704_81527777_81531670
transcript_20448.known	chr12	-	431	4	FSM	ENSMUSG00000091803.8	ENSMUST00000168463.8	431	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	143.25501736414	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTATGCTTTTCAGTCT	995	False	NA	-6	True	ATTAAA	-14	NA	81531887	81518866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_81518946_81521360_81521424_81527704_81527777_81531670
transcript_20449.known	chr12	-	685	3	FSM	ENSMUSG00000091803.8	ENSMUST00000169124.2	685	3	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_2	58.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCCTAAGAATTATTTTAAA	994	False	NA	NA	False	NA	NA	NA	81531888	81521028	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_81521424_81527704_81527777_81531670
transcript_20450.known	chr12	-	4655	4	FSM	ENSMUSG00000090935.11	ENSMUST00000163402.8	4655	4	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_1	30.6920185064456	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTATAATGGTACATGTCT	NA	False	NA	NA	False	NA	NA	NA	81579685	81544714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_81548941_81551317_81551414_81557602_81557740_81579489
transcript_20453.known	chr12	-	3305	3	FSM	ENSMUSG00000090935.11	ENSMUST00000164431.2	3305	3	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	56.5	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTTGTTTTTGTTTCCTT	NA	False	NA	-6	True	AATAGA	-12	NA	81579673	81545915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_81548941_81551317_81551414_81579489
transcript_20456.known	chr12	-	691	3	FSM	ENSMUSG00000090935.11	ENSMUST00000169158.2	691	3	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_2	16.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAACAAACAAACAAACAAA	NA	False	NA	NA	False	NA	NA	NA	81579654	81551024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_81551414_81557602_81557740_81579489
transcript_20457.nnic	chr12	-	610	3	NNC	ENSMUSG00000090935.11	novel	4655	4	NA	NA	-33	-5557	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	92.5	41	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTATGTGTGGCTGTATT	NA	False	NA	NA	False	AATAAA	-28	NA	81579718	81556581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_81556826_81557602_81557740_81579489
transcript_20460.known	chr12	-	897	7	FSM	ENSMUSG00000002679.15	ENSMUST00000161598.8	897	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	187.349717551606	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGCCTTTCCCTTGTCTC	NA	False	NA	-2	True	AATAAA	-22	NA	81641737	81620333	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_81620735_81621298_81621327_81628574_81628684_81629406_81629490_81635756_81635849_81638027_81638188_81641713
transcript_20469.known	chr12	+	1831	4	FSM	ENSMUSG00000042700.17	ENSMUST00000222849.2	1831	4	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	11.0855260988773	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	GAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	82216249	82359798	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_82216278_82216789_82216851_82281236_82281303_82358122
transcript_20470.nic	chr12	+	682	3	ISM	ENSMUSG00000042700.17	ENSMUST00000053969.7	7488	21	135354	1511	6156	0	3prime_fragment	FALSE	canonical	3	131	junction_1	16.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTGAATGTCTTTATTT	NA	False	NA	18	True	NA	NA	NA	82493476	82497045	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_82493706_82496083_82496166_82496674
transcript_20471.known	chr12	+	5907	22	FSM	ENSMUSG00000042700.17	ENSMUST00000220963.2	5907	22	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	22.1136007440779	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGAATACTCTTTATTAT	NA	False	NA	NA	False	ATTAAA	-27	NA	82216219	82493903	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_82216278_82216789_82216851_82281236_82281303_82358122_82358184_82387435_82389274_82404006_82404138_82409716_82409906_82419141_82419317_82431424_82431529_82434328_82434487_82442966_82443541_82444119_82444395_82449683_82449954_82463677_82463825_82467311_82467437_82469148_82469268_82471786_82472230_82479526_82479767_82480462_82480629_82484461_82484709_82487588_82487736_82493590
transcript_20474.known	chr12	+	2008	14	FSM	ENSMUSG00000021222.10	ENSMUST00000021645.9	2008	14	0	0	0	0	multi-exon	TRUE	canonical	3	216	junction_9	23.528907060372	237	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTTCTAATTTTGCCAAA	NA	False	NA	10	True	NA	NA	NA	83567239	83588689	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_83567392_83572917_83573015_83575941_83576043_83576750_83576909_83577597_83577681_83579052_83579156_83580640_83580785_83581633_83581684_83582673_83582754_83584486_83584589_83584717_83584816_83586081_83586256_83586562_83586678_83588138
transcript_20480.known	chr12	-	4036	12	FSM	ENSMUSG00000042628.9	ENSMUST00000048319.6	4036	12	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_11	24.5928834697229	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGCCATCGTATGGATC	NA	False	NA	NA	False	TTTAAA	-3	NA	83643996	83593622	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_83594890_83597594_83597709_83598239_83598421_83599149_83599321_83601716_83601835_83601938_83602037_83602374_83602484_83605387_83605495_83615622_83615838_83621405_83621911_83641171_83642097_83643770
transcript_20483.nnic	chr12	-	3000	11	NNC	ENSMUSG00000042628.9	novel	4036	12	NA	NA	-9304	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	38.7479031690748	65	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGCCATCGTATGGATC	NA	False	NA	NA	False	TTTAAA	-3	NA	83653300	83593622	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_83594890_83597594_83597709_83598239_83598421_83599149_83599321_83601716_83601835_83601938_83602037_83602374_83602484_83605387_83605495_83615622_83615838_83621405_83621911_83653185
transcript_20521.nic	chr12	+	1228	11	NIC	ENSMUSG00000010608.16	novel	1116	11	NA	NA	-98	0	combination_of_known_junctions	FALSE	canonical	3	90	junction_2	131.960600180508	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAAGAAAGACA	3883	False	NA	-11	True	NA	NA	NA	83678927	83710773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_83679192_83685901_83685966_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752
transcript_20533.known	chr12	+	788	8	FSM	ENSMUSG00000010608.16	ENSMUST00000182036.8	788	8	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_2	140.669245873765	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAGATGAAGAAACAAAGCG	4020	False	NA	NA	False	NA	NA	NA	83679064	83706238	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_83679192_83685901_83685966_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196
transcript_20535.known	chr12	+	608	6	FSM	ENSMUSG00000010608.16	ENSMUST00000183154.8	608	6	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	173.243643462033	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTACTACTACAGTTTTT	3986	False	NA	NA	False	ATTAAA	-21	NA	83679030	83693004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_83679192_83685901_83685966_83689175_83689294_83689402_83689524_83691172_83691223_83692910
transcript_20537.known	chr12	+	4226	19	FSM	ENSMUSG00000010608.16	ENSMUST00000048155.16	4226	19	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_1	109.211215111695	593	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATTGTGTAGTGCATATA	3981	False	NA	13	True	AATAAA	-13	NA	83679025	83729897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83721438_83721817_83722093_83722855_83722955_83724628_83724677_83728276
transcript_20538.known	chr12	+	2046	16	FSM	ENSMUSG00000010608.16	ENSMUST00000181983.8	2046	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	166.015528055527	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAAAAGAAGAAAAACGA	2965	False	NA	NA	False	NA	NA	NA	83678009	83721191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_83678131_83678242_83678397_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112
transcript_20540.known	chr12	+	2690	12	FSM	ENSMUSG00000019969.15	ENSMUST00000041806.13	2690	12	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_9	21.5122490573192	180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCTCTCTGTCCTGGCTGG	3345	False	NA	9	True	ATTAAA	-20	NA	83734925	83781869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_83735068_83746128_83746196_83746285_83746426_83759077_83759329_83761537_83761680_83769764_83769833_83771269_83771491_83774999_83775099_83775471_83775559_83777312_83777487_83778447_83778567_83780689
transcript_20554.known	chr12	-	441	3	FSM	ENSMUSG00000021224.16	ENSMUST00000125089.2	441	3	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_2	25.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAACATCT	NA	False	NA	NA	False	NA	NA	NA	83923572	83878601	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_83878771_83888991_83889133_83923441
transcript_20556.known	chr12	-	555	2	FSM	ENSMUSG00000096953.3	ENSMUST00000221865.2	555	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTATTATTATTATTAATTA	NA	False	NA	NA	False	GATAAA	-20	NA	83997352	83991982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_83992340_83997154
transcript_20557.known	chr12	+	2196	3	FSM	ENSMUSG00000021226.8	ENSMUST00000021649.8	2196	3	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_2	1.5	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTATGTTGTCCTTCCT	NA	False	NA	NA	False	AATAAA	-19	NA	84034634	84040647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_84035256_84037267_84037471_84039275
transcript_20558.known	chr12	+	2272	3	FSM	ENSMUSG00000072949.7	ENSMUST00000168120.3	2272	3	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	2	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGAAGTGAAGTCTCAAAG	2819	False	NA	NA	False	AATAAA	-17	NA	84056263	84065145	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_84056741_84061152_84061356_84063553
transcript_20561.known	chr12	+	3021	9	FSM	ENSMUSG00000042523.13	ENSMUST00000156138.8	3021	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	7.40671148351277	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CGGAAGGAAGGAAGGAAAGA	9936	False	NA	NA	False	NA	NA	NA	84161163	84187569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_84161174_84168056_84168096_84171248_84171359_84173304_84173345_84173735_84173792_84178105_84178162_84182340_84182468_84183270_84183412_84185127
transcript_20562.known	chr12	+	5727	8	FSM	ENSMUSG00000042523.13	ENSMUST00000123491.8	5727	8	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	4.44007721940573	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTCCTTTGGTTACTGTA	9912	False	NA	NA	False	AATAAA	-24	NA	84161139	84190291	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_84161174_84168056_84168096_84171248_84171359_84173735_84173792_84178105_84178162_84182340_84182468_84183270_84183412_84185127
transcript_20571.known	chr12	+	403	6	FSM	ENSMUSG00000042523.13	ENSMUST00000136159.2	403	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	6.1773780845922	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCAGAATATTAGTTTAGA	9937	False	NA	NA	False	ATTAAA	-16	NA	84161164	84180758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_84161174_84168056_84168096_84171248_84171359_84173735_84173792_84178105_84178162_84180625
transcript_20573.nic	chr12	+	628	3	ISM	ENSMUSG00000042523.13	ENSMUST00000136159.2	403	6	-110	9040	-85	-9040	5prime_fragment	FALSE	canonical	2	7	junction_1	4.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGACAGCCTGGGAAGGAAA	9827	False	NA	NA	False	NA	NA	NA	84161054	84171718	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_84161174_84168056_84168096_84171248
transcript_20574.known	chr12	-	2359	1	FSM	ENSMUSG00000054383.3	ENSMUST00000061425.3	2359	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTCCTGACACGTATAAA	NA	False	NA	NA	False	AATAAA	-17	NA	84195263	84192904	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_84192900_84195300
transcript_20575.known	chr12	+	790	8	FSM	ENSMUSG00000042523.13	ENSMUST00000046340.9	790	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6.30192714288937	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATTGTCTATTTTAAAGA	9917	False	NA	NA	False	AATAGA	-11	NA	84161144	84185231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_84161174_84167928_84168096_84171248_84171359_84173735_84173792_84178105_84178162_84182340_84182468_84183270_84183412_84185127
transcript_20577.known	chr12	+	684	2	FSM	ENSMUSG00000113052.2	ENSMUST00000223261.2	684	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATATAAAAAATAAATCGTAA	6161	False	NA	NA	False	AATAAA	-10	NA	84242742	84246354	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_84243187_84246114
transcript_20578.known	chr12	-	643	1	FSM	ENSMUSG00000042962.6	ENSMUST00000058103.6	643	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTGTCACCCGTGTGAGC	NA	False	NA	NA	False	NA	NA	NA	84305747	84305104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_84305100_84305700
transcript_20585.known	chr12	+	2597	12	FSM	ENSMUSG00000042472.12	ENSMUST00000045931.12	2597	12	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_3	18.7929123266993	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCTTTGGCTCTTGTTTT	1583	False	NA	11	True	AATAAA	-16	NA	84363625	84390497	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_84363949_84368585_84368766_84369657_84369794_84372344_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
transcript_20586.known	chr12	+	2284	12	FSM	ENSMUSG00000042472.12	ENSMUST00000222606.2	2284	12	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	61.2357590123466	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCACCTCTTTGGCTCTTGT	1861	False	NA	8	True	AATAAA	-13	NA	84363903	84390494	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_84363949_84368585_84368766_84369657_84369794_84372376_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
transcript_20594.known	chr12	+	2073	10	FSM	ENSMUSG00000072946.13	ENSMUST00000146377.8	2073	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	74.1401742114137	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGGTGAGAAGCAGTTAA	NA	False	NA	NA	False	AATAAA	-14	NA	84332179	84361628	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_84332308_84339057_84339143_84341990_84342110_84344784_84344977_84349010_84349182_84352699_84352910_84354549_84354672_84355118_84355207_84357692_84357733_84360710
transcript_2060.known	chr1	-	1175	6	FSM	ENSMUSG00000026035.16	ENSMUST00000114345.9	1175	6	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_5	38.958439393795	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGTACCAGGACATATTTG	NA	False	NA	NA	False	AATAAA	-16	NA	58484528	58472945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484304
transcript_20601.known	chr12	+	1569	9	FSM	ENSMUSG00000042472.12	ENSMUST00000220931.2	1569	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	68.4233147399335	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGTTGGTTTTTGTT	1858	False	NA	NA	False	AATAAA	-14	NA	84363900	84382212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_84363949_84368585_84368766_84369657_84369794_84372344_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84381841
transcript_20608.known	chr12	+	1286	10	FSM	ENSMUSG00000072946.13	ENSMUST00000135001.8	1286	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	79.8639274865708	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTTCTTGATTCTAGTGT	NA	False	NA	28	True	TTTAAA	-19	NA	84332173	84360876	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_84332251_84339057_84339143_84341990_84342110_84344784_84344977_84349010_84349182_84352699_84352910_84354549_84354672_84355118_84355207_84357676_84357733_84360710
transcript_20609.known	chr12	+	656	4	FSM	ENSMUSG00000072946.13	ENSMUST00000128158.8	656	4	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_3	9.0921211313239	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTGTCTTTTTTTACTT	NA	False	NA	NA	False	TATAAA	-45	NA	84332154	84345140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_84332251_84339057_84339143_84341990_84342110_84344784
transcript_2061.nic	chr1	-	589	6	ISM	ENSMUSG00000026035.16	ENSMUST00000081677.12	896	7	-23	3330	-23	88	5prime_fragment	FALSE	canonical	3	28	junction_5	68.4502739220231	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGTCATCTCTTTCTTT	NA	False	NA	1	True	AATATA	-18	NA	58484668	58473485	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484490
transcript_20610.known	chr12	+	1386	11	FSM	ENSMUSG00000072946.13	ENSMUST00000123693.2	1386	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	94.1679881913169	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTTCTTGATTCTAGTGT	NA	False	NA	28	True	TTTAAA	-19	NA	84332186	84360876	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_84332251_84339057_84339143_84341990_84342110_84343001_84343131_84344784_84344977_84349010_84349182_84352699_84352910_84354549_84354672_84355118_84355207_84357692_84357733_84360710
transcript_20611.known	chr12	+	655	5	FSM	ENSMUSG00000042472.12	ENSMUST00000222773.2	655	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	82.5692890849861	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGAAGGTGCACATGAGGA	1876	False	NA	NA	False	NA	NA	NA	84363918	84378471	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_84363949_84372344_84372564_84374052_84374245_84376575_84376727_84378408
transcript_20615.nic	chr12	+	1543	12	NIC	ENSMUSG00000021235.14	novel	1602	12	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_5	62.6245535772017	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCTTTTCCTCTTCTGA	NA	False	NA	17	True	AATAAA	-17	NA	84408768	84420570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_84409012_84413658_84413794_84414916_84414976_84415359_84415484_84417029_84417129_84417697_84417806_84417881_84417945_84418224_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
transcript_20617.known	chr12	+	1583	12	FSM	ENSMUSG00000021235.14	ENSMUST00000152913.8	1583	12	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_7	67.4165538687435	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTCTTTTCCTCTT	NA	False	NA	13	True	AATAAA	-13	NA	84408803	84420566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_84409012_84413658_84413794_84414916_84414976_84415359_84415484_84417029_84417161_84417697_84417806_84417881_84417945_84418177_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
transcript_2062.known	chr1	-	391	6	FSM	ENSMUSG00000026035.16	ENSMUST00000190048.7	391	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	79.4883639283134	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGCCCAAATACCAATGGAT	NA	False	NA	-87	True	NA	NA	NA	58484598	58473573	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484530
transcript_20621.known	chr12	+	1602	12	FSM	ENSMUSG00000021235.14	ENSMUST00000021661.13	1602	12	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_6	16.3656564409681	1800	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCTTTTCCTCTTCTGA	NA	False	NA	17	True	AATAAA	-17	NA	84408741	84420570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_84409012_84413658_84413794_84414916_84414976_84415359_84415484_84417029_84417161_84417697_84417806_84417881_84417945_84418224_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
transcript_20629.nnic	chr12	+	1512	11	NIC	ENSMUSG00000021235.14	novel	1602	12	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	2	7	junction_6	69.5125887879311	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCTTTTCCTCTTCTGA	NA	False	NA	17	True	AATAAA	-17	NA	84408768	84420570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_84409012_84413658_84413794_84414916_84414976_84415359_84415484_84417029_84417161_84417697_84417806_84418224_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
transcript_2063.known	chr1	-	392	6	FSM	ENSMUSG00000026035.16	ENSMUST00000185990.2	392	6	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_5	65.3066612222674	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATGGCCCAAATACCAAT	NA	False	NA	-91	True	NA	NA	NA	58484641	58473577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484568
transcript_20631.known	chr12	+	2056	11	FSM	ENSMUSG00000021235.14	ENSMUST00000150391.8	2056	11	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_5	17.0188131196038	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTTGTGTCTCTTTTCC	NA	False	NA	9	True	AATAAA	-9	NA	84408816	84420562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_84409012_84413658_84413794_84414916_84414976_84415359_84415484_84417029_84417806_84417881_84417945_84418224_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
transcript_20652.nnic	chr12	+	1399	10	NIC	ENSMUSG00000021235.14	novel	1602	12	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_2	73.0227429480317	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCTTTTCCTCTTCTGA	NA	False	NA	17	True	AATAAA	-17	NA	84408761	84420570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_84409012_84413658_84413794_84417029_84417161_84417697_84417806_84417881_84417945_84418224_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
transcript_20653.known	chr12	-	3000	9	FSM	ENSMUSG00000021234.10	ENSMUST00000065536.9	3000	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	4.82020487116471	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGAGATATTTTTTTTT	405	False	NA	NA	False	AATAAA	-29	NA	84408607	84392082	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_84393184_84393560_84393710_84395050_84395151_84395379_84395545_84400573_84400702_84401483_84401822_84402697_84403252_84404301_84404625_84408465
transcript_20657.known	chr12	-	3357	8	FSM	ENSMUSG00000021234.10	ENSMUST00000021659.2	3357	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	4.96929346597888	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGTGATGTTTGAGATAT	417	False	NA	NA	False	AATAAA	-21	NA	84408595	84392090	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_84393710_84395050_84395151_84395379_84395545_84400573_84400702_84401483_84401822_84402697_84403252_84404301_84404625_84408465
transcript_20661.known	chr12	-	4972	16	FSM	ENSMUSG00000021236.17	ENSMUST00000110272.9	4972	16	0	0	0	0	multi-exon	TRUE	canonical	3	43	junction_8	4.47014789713072	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTTTCCTTTGGGTTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	84455803	84420648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_84424155_84425953_84426070_84427094_84427152_84429005_84429147_84430992_84431095_84431921_84431984_84432570_84432651_84432911_84433001_84433511_84433548_84433753_84433830_84439179_84439324_84441397_84441478_84443452_84443733_84446113_84446187_84452179_84452250_84455743
transcript_20664.known	chr12	-	4881	15	FSM	ENSMUSG00000021236.17	ENSMUST00000120942.8	4881	15	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_13	11.8983792413685	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATAGTTTTCCTTTGGGTT	NA	False	NA	NA	False	AATAAA	-16	NA	84455788	84420651	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_84424155_84425953_84426070_84427094_84427152_84429005_84429147_84430992_84431095_84431921_84431984_84432570_84432651_84432911_84433001_84433511_84433548_84433753_84433830_84439179_84439324_84441397_84441478_84443452_84443733_84452179_84452250_84455743
transcript_20668.known	chr12	-	827	3	FSM	ENSMUSG00000021236.17	ENSMUST00000136511.2	827	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	23	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTACTACGTTTCTTCTT	NA	False	NA	NA	False	AATAAA	-34	NA	84455758	84450175	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_84450918_84452179_84452250_84455743
transcript_20670.known	chr12	-	3399	12	FSM	ENSMUSG00000021238.12	ENSMUST00000085192.7	3399	12	0	0	0	0	multi-exon	FALSE	canonical	2	131	junction_11	16.2917613413438	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTCTTTTCCTTCTTTTG	NA	False	NA	NA	False	AATAAA	-33	NA	84497777	84477490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_84479323_84480205_84480305_84480629_84480810_84483101_84483284_84483502_84483693_84484748_84484871_84486186_84486490_84487008_84487088_84488536_84488699_84488844_84488920_84490502_84490563_84497662
transcript_20672.nic	chr12	-	1742	10	ISM	ENSMUSG00000021238.12	ENSMUST00000085192.7	3399	12	-13	2878	-12	-2878	5prime_fragment	FALSE	canonical	2	131	junction_9	17.9814719456816	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACACTGTGTTCGAGTCCT	NA	False	NA	NA	False	NA	NA	NA	84497790	84480368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_-_84480810_84483101_84483284_84483502_84483693_84484748_84484871_84486186_84486490_84487008_84487088_84488536_84488699_84488844_84488920_84490502_84490563_84497662
transcript_20677.known	chr12	+	1383	1	FSM	ENSMUSG00000098134.2	ENSMUST00000183146.2	1383	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1347	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCCTGGTGTGATCTTTC	NA	False	NA	10	True	AATAAA	-19	NA	84463969	84465352	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_84464000_84465400
transcript_20678.nnic	chr12	+	2180	6	NNC	ENSMUSG00000085793.4	novel	2270	6	NA	NA	42	-2	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_5	52.6399088145107	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGAGGCCCAGGTTTTCCT	NA	False	NA	3	True	AATAAA	-14	NA	84498237	84578345	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_84498318_84503014_84503090_84504722_84504761_84506392_84506460_84509142_84509181_84576463
transcript_20682.known	chr12	+	2270	6	FSM	ENSMUSG00000085793.4	ENSMUST00000137170.4	2270	6	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	15.7810012356631	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGCCCAGGTTTTCCTTG	NA	False	NA	5	True	AATAAA	-16	NA	84498195	84578347	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_84498318_84503014_84503090_84504722_84504761_84506392_84506460_84509142_84509227_84576463
transcript_20683.nic	chr12	+	959	6	NIC	ENSMUSG00000085793.4	novel	2270	6	NA	NA	42	374	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	59.240526668827	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTGAGGCCCAGGTCTGT	NA	False	NA	NA	False	AATAAA	-19	NA	84498237	84593293	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_84498318_84503014_84503090_84504722_84504761_84506392_84506460_84509142_84509227_84592678
transcript_20684.known	chr12	-	2309	19	FSM	ENSMUSG00000021240.7	ENSMUST00000021666.6	2309	19	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_18	37.2765772285566	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAGAAAAAGAAAACTGGT	NA	False	NA	NA	False	NA	NA	NA	84664144	84649426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678_84660819_84661850_84661979_84662099_84662219_84664056
transcript_20718.known	chr12	-	3299	4	FSM	ENSMUSG00000021242.10	ENSMUST00000021668.10	3299	4	0	0	0	0	multi-exon	FALSE	canonical	3	2850	junction_3	124.194292228839	12520	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGATCCTGGATGCCTGAT	NA	False	NA	NA	False	AATAAA	-21	NA	84819926	84801335	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_84803987_84807493_84807667_84812050_84812159_84819559
transcript_20720.known	chr12	+	727	4	FSM	ENSMUSG00000021241.8	ENSMUST00000222982.2	727	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	90.0900783783776	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAATTTGGAGTTAACCTC	NA	False	NA	-69	True	NA	NA	NA	84820078	84821778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_84820146_84820369_84820452_84820566_84820683_84821316
transcript_20725.known	chr12	+	883	4	FSM	ENSMUSG00000021241.8	ENSMUST00000021667.7	883	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	133.217449641137	1982	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTTCTTATCGTGTTTTC	NA	False	NA	12	True	TATAAA	-15	NA	84820024	84821859	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_84820146_84820348_84820452_84820566_84820683_84821316
transcript_20733.known	chr12	+	374	3	FSM	ENSMUSG00000021241.8	ENSMUST00000222449.2	374	3	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	24	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCACCACTGCACCAGTG	NA	False	NA	NA	False	NA	NA	NA	84820051	84821514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_84820146_84820369_84820452_84821316
transcript_20737.known	chr12	+	485	3	FSM	ENSMUSG00000021241.8	ENSMUST00000222022.2	485	3	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_2	92.5	561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTAACTCTTGGCCGAA	NA	False	NA	NA	False	NA	NA	NA	84820098	84821651	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_84820146_84820348_84820452_84821316
transcript_20742.known	chr12	+	1588	2	FSM	ENSMUSG00000021241.8	ENSMUST00000222166.2	1588	2	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTATCGTGTTTTCAAT	NA	False	NA	15	True	TATAAA	-18	NA	84820050	84821862	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_84820146_84820369
transcript_20743.known	chr12	+	843	2	FSM	ENSMUSG00000021241.8	ENSMUST00000223089.2	843	2	0	0	0	0	multi-exon	FALSE	canonical	3	319	junction_1	0	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTGGACTAGTTTCAGTC	NA	False	NA	NA	False	AAGAAA	-2	NA	84820064	84821110	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_84820146_84820348
transcript_20746.known	chr12	+	731	8	FSM	ENSMUSG00000021243.15	ENSMUST00000171040.2	731	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	770.463443887734	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAAAATGCTATGTTG	4713	False	NA	11	True	ATTAAA	-13	NA	85017754	85030065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_85017818_85017988_85018057_85019763_85019836_85020864_85021014_85026168_85026242_85027288_85027377_85029009_85029105_85029942
transcript_20749.known	chr12	+	749	8	FSM	ENSMUSG00000021243.15	ENSMUST00000021669.15	749	8	0	0	0	0	multi-exon	FALSE	canonical	3	1900	junction_1	151.77601649692	8656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGTTGTCTCAATTCTTA	4629	False	NA	23	True	ATTAAA	-25	NA	85017670	85030077	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_85017740_85017988_85018057_85019763_85019836_85020864_85021014_85026168_85026242_85027288_85027377_85029009_85029105_85029942
transcript_2075.known	chr1	-	487	5	FSM	ENSMUSG00000026035.16	ENSMUST00000124550.2	487	5	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_4	43.505028444997	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCAGGACAGCCAAGGCTA	NA	False	NA	NA	False	NA	NA	NA	58484335	58477334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484304
transcript_20750.known	chr12	+	7003	21	FSM	ENSMUSG00000021244.16	ENSMUST00000021670.15	7003	21	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_4	25.0129466476863	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCCCTTTTCTCTTATTT	NA	False	NA	32	True	AATAAA	-42	NA	85043125	85117289	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_85044131_85059662_85059900_85060677_85060897_85061423_85062368_85075543_85077662_85080690_85080809_85087346_85087768_85088596_85088690_85088895_85089086_85089715_85089835_85091143_85091299_85095582_85095646_85095906_85096027_85096465_85096643_85096717_85096802_85097062_85097147_85103995_85104077_85107036_85107089_85111744_85111876_85116392_85116574_85116878
transcript_20753.known	chr12	+	2764	15	FSM	ENSMUSG00000004789.11	ENSMUST00000053811.10	2764	15	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_7	23.9123612470237	3943	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTCCGGGATCTGTGCTC	NA	False	NA	20	True	ATTAAA	-20	NA	85157606	85180862	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165189_85165300_85165376_85165555_85165612_85166006_85166119_85168760_85168914_85169553_85169631_85170547_85170646_85175084_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392
transcript_20767.known	chr12	+	770	10	FSM	ENSMUSG00000004789.11	ENSMUST00000223332.2	770	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	107.546372427071	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGATGCTTTCCTGAAAA	NA	False	NA	NA	False	NA	NA	NA	85157666	85175111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_85157734_85162046_85162096_85165132_85165189_85165300_85165376_85165555_85165612_85166006_85166119_85168760_85168914_85169553_85169631_85170547_85170646_85175084
transcript_20768.known	chr12	+	2259	16	FSM	ENSMUSG00000004789.11	ENSMUST00000221357.2	2259	16	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_15	88.2275844997848	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTTCTGGAGTAGCTGT	NA	False	NA	NA	False	TTTAAA	-10	NA	85157610	85181619	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165189_85165300_85165376_85165555_85165612_85166006_85166119_85168760_85168914_85169553_85169631_85170547_85170646_85175084_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392_85179606_85180863
transcript_20774.known	chr12	-	2881	11	FSM	ENSMUSG00000019235.10	ENSMUST00000221972.2	2881	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	69.4942443659905	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATCTTTGCATCATTAATA	NA	False	NA	-2	True	AATAAA	-17	NA	85198038	85182022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_85183258_85183519_85183616_85185204_85185288_85185426_85185517_85185851_85186443_85187117_85187251_85187602_85187651_85193636_85193730_85194519_85194645_85196397_85196683_85197936
transcript_20775.known	chr12	-	1582	7	FSM	ENSMUSG00000004791.8	ENSMUST00000004913.7	1582	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.4142135623731	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGTCTAGGATGTATGT	NA	False	NA	NA	False	AATAAA	-19	NA	85224070	85213412	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_85214189_85216131_85216192_85216284_85216315_85218148_85218229_85218433_85218631_85222529_85222570_85223671
transcript_20776.nic	chr12	-	947	3	ISM	ENSMUSG00000004791.8	ENSMUST00000220985.2	1226	7	6653	-332	274	0	3prime_fragment	FALSE	canonical	1	3	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGTCTAGGATGTATGT	NA	False	NA	NA	False	AATAAA	-19	NA	85216395	85213412	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_-_85214189_85216131_85216192_85216284
transcript_20780.known	chr12	+	1605	8	FSM	ENSMUSG00000004788.12	ENSMUST00000004910.12	1605	8	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_7	13.1661284657074	841	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTGGAAAGGGCCCCAAAC	NA	False	NA	NA	False	AATAAA	-21	NA	85266254	85273402	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_85266499_85266595_85266717_85266870_85267020_85268250_85268415_85269517_85269614_85270154_85270293_85271328_85271396_85272776
transcript_20781.known	chr12	+	957	7	FSM	ENSMUSG00000004788.12	ENSMUST00000136495.3	957	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	128.430266422418	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCTCTGACACGGCCTGC	NA	False	NA	NA	False	NA	NA	NA	85266286	85272924	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_85266499_85266595_85266717_85266870_85267020_85268250_85268415_85269517_85269614_85271328_85271396_85272776
transcript_20787.known	chr12	+	587	2	FSM	ENSMUSG00000004788.12	ENSMUST00000130760.2	587	2	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_1	0	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAAGTTCGTTTATTGTTC	NA	False	NA	31	True	AATAAA	-16	NA	85271299	85273267	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_85271396_85272776
transcript_2079.known	chr1	-	425	2	FSM	ENSMUSG00000026035.16	ENSMUST00000186242.2	425	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCATGCCTTTTTTTTTTT	NA	False	NA	-25	True	AATAGA	-2	NA	58471344	58470178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_58470490_58471230
transcript_20791.known	chr12	+	4482	3	FSM	ENSMUSG00000045064.6	ENSMUST00000059341.5	4482	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTCTCTTGTGTCATTT	NA	False	NA	NA	False	AAAACA	-19	NA	85335364	85346132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_85335560_85336325_85337656_85343175
transcript_20795.known	chr12	-	634	3	FSM	ENSMUSG00000008822.16	ENSMUST00000121930.2	634	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	221.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATAGAACTATTCTGTG	9269	False	NA	NA	False	ATTAAA	-3	NA	85335212	85319320	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_85319602_85326764_85326857_85334951
transcript_20798.known	chr12	-	648	3	FSM	ENSMUSG00000008822.16	ENSMUST00000008966.13	648	3	0	0	0	0	multi-exon	FALSE	canonical	3	386	junction_2	28.5	3716	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGCTTCCCCCCCTCCCT	4291	False	NA	0	True	AATAAA	-24	NA	85327209	85319171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_85319602_85326764_85326857_85327083
transcript_20799.known	chr12	-	735	2	FSM	ENSMUSG00000008822.16	ENSMUST00000117138.3	735	2	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_1	0	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTATGCTTACATTGCTTC	4420	False	NA	-11	True	AATAAA	-13	NA	85327080	85319182	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_85319602_85326764
transcript_2080.known	chr1	+	2098	6	FSM	ENSMUSG00000026036.18	ENSMUST00000171597.2	2098	6	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_2	29.7119504576862	173	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGGACACACTGTAT	NA	False	NA	13	True	NA	NA	NA	58486789	58501425	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_58487249_58489545_58489709_58491247_58491375_58494755_58494895_58496938_58497023_58500299
transcript_20800.known	chr12	-	448	3	FSM	ENSMUSG00000008822.16	ENSMUST00000065913.8	448	3	0	0	0	0	multi-exon	FALSE	canonical	1	15	junction_1	185.5	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTCCTTTGGCGGCTGCC	4308	False	NA	NA	False	NA	NA	NA	85327192	85325666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_85325914_85326764_85326857_85327083
transcript_20801.known	chr12	-	5386	22	FSM	ENSMUSG00000034290.10	ENSMUST00000040992.8	5386	22	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_16	12.716336556552	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAGGGCTGTGTTTGAGTA	7957	False	NA	-3	True	AATAAA	-15	NA	85386136	85346287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_85348701_85350240_85350448_85352236_85352399_85352910_85353141_85354703_85354764_85355592_85355764_85357160_85357323_85358111_85358221_85359719_85359876_85360955_85361003_85361175_85361377_85362353_85362499_85367487_85367681_85368802_85368854_85372081_85372147_85374162_85374274_85376617_85376750_85379274_85379381_85380759_85380831_85381371_85381428_85383081_85383260_85385776
transcript_20803.nic	chr12	-	1117	2	ISM	ENSMUSG00000034290.10	ENSMUST00000040992.8	5386	22	33028	5192	33028	-5192	internal_fragment	FALSE	canonical	3	103	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTTATTTTGTGTCATATT	NA	False	NA	NA	False	NA	NA	NA	85353108	85351479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_-_85352399_85352910
transcript_20808.known	chr12	-	1482	5	FSM	ENSMUSG00000021248.10	ENSMUST00000040766.9	1482	5	0	0	0	0	multi-exon	FALSE	canonical	3	1293	junction_2	34.3110769285955	5373	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTCCTTGTGTATGTGT	8464	False	NA	-5	True	ATTAAA	-20	NA	85421621	85389561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_85390324_85390998_85391126_85397576_85397651_85401568_85401681_85421214
transcript_2081.known	chr1	-	3561	18	FSM	ENSMUSG00000026037.15	ENSMUST00000027198.12	3561	18	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_12	52.5802073093293	444	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGTAGTTTTGTTTTGA	NA	False	NA	0	True	AATAAA	-23	NA	58544268	58501929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58522801_58522863_58532015_58532048_58532819_58532910_58536534_58536625_58539399_58539544_58540481_58540586_58541000_58541050_58543930
transcript_20812.known	chr12	+	1645	4	FSM	ENSMUSG00000034271.17	ENSMUST00000177587.9	1645	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	88.8606899715629	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTCGAGTGGTGTCTG	6250	False	NA	34	True	AGTAAA	-20	NA	85645800	85686652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_85646002_85654906_85655140_85678418_85678524_85685546
transcript_20813.nic	chr12	+	1417	2	ISM	ENSMUSG00000034271.17	ENSMUST00000171754.3	1559	4	31421	0	29217	0	3prime_fragment	FALSE	canonical	3	211	junction_1	0	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTCGAGTGGTGTCTG	NA	False	NA	34	True	AGTAAA	-20	NA	85678212	85686652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_85678524_85685546
transcript_20815.known	chr12	+	955	3	FSM	ENSMUSG00000034266.7	ENSMUST00000040536.6	955	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGGAAAGCGGCTTCCC	NA	False	NA	NA	False	AATAAA	-18	NA	85733442	85755861	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_85733748_85736041_85736147_85755316
transcript_20816.known	chr12	+	3435	10	FSM	ENSMUSG00000034258.5	ENSMUST00000040461.4	3435	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_4	3.8522079607466	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCCTCATCATTTAGTG	NA	False	NA	NA	False	AATAAA	-14	NA	85793312	85860359	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_85794364_85829730_85829873_85832861_85833003_85842948_85843017_85845271_85845376_85849908_85850020_85851141_85851248_85851369_85851482_85851969_85852026_85858815
transcript_2082.known	chr1	-	8685	12	FSM	ENSMUSG00000038174.15	ENSMUST00000161600.8	8685	12	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	5.70486235990445	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCCTGAGTTGATTGTAT	NA	False	NA	1	True	TATAAA	-30	NA	58625482	58561964	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_58569419_58574548_58574709_58578717_58578806_58579292_58579410_58583825_58583922_58585265_58585382_58587797_58587879_58591308_58591489_58596430_58596533_58597135_58597217_58605015_58605114_58625370
transcript_20822.known	chr12	-	696	3	FSM	ENSMUSG00000021252.12	ENSMUST00000131681.2	696	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	374.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCCTGAGCACATAGACTG	NA	False	NA	NA	False	NA	NA	NA	85871286	85862432	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_85862968_85863089_85863209_85871244
transcript_20823.known	chr12	-	1169	5	FSM	ENSMUSG00000021252.12	ENSMUST00000021676.12	1169	5	0	0	0	0	multi-exon	FALSE	canonical	3	716	junction_4	65.9104506129339	4309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCGTCTGTGTACTTTGGC	NA	False	NA	-4	True	AATAAA	-21	NA	85871296	85862221	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_85862968_85863089_85863209_85866252_85866344_85868861_85869023_85871244
transcript_20824.known	chr12	+	655	7	FSM	ENSMUSG00000012609.20	ENSMUST00000153570.9	655	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	17.9536440126603	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAAAGCATTCCACATCCT	NA	False	NA	NA	False	AAAACA	-27	NA	85871794	85896091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_85871861_85873226_85873399_85878668_85878776_85890551_85890635_85890719_85890773_85892020_85892128_85896024
transcript_20825.nic	chr12	+	1243	6	ISM	ENSMUSG00000012609.20	ENSMUST00000153570.9	655	7	-325	3634	-11	1	5prime_fragment	FALSE	canonical	3	11	junction_4	19.5693638118361	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTTAATATGGTACATTT	NA	False	NA	NA	False	NA	NA	NA	85871469	85892457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_85871861_85873226_85873399_85878668_85878776_85890551_85890635_85890719_85890773_85892020
transcript_20828.known	chr12	+	2165	5	FSM	ENSMUSG00000012609.20	ENSMUST00000124701.8	2165	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	17.6210101867061	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTCTTAATATGGTACATT	NA	False	NA	NA	False	NA	NA	NA	85871794	85892456	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_85871861_85873226_85873399_85878668_85878776_85890551_85890635_85890719
transcript_20829.nic	chr12	+	1251	5	ISM	ENSMUSG00000012609.20	ENSMUST00000176008.8	5482	10	-343	24373	-24	1	5prime_fragment	FALSE	canonical	3	30	junction_4	10.1334840997556	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTTAATATGGTACATTT	NA	False	NA	NA	False	NA	NA	NA	85871408	85892457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_85871861_85873226_85873399_85878668_85878776_85890551_85890635_85892020
transcript_20834.known	chr12	+	783	9	FSM	ENSMUSG00000007867.10	ENSMUST00000222821.2	783	9	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_5	10.7637992827812	983	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTTCTTCCATTCTGTCC	NA	False	NA	7	True	AATAAA	-17	NA	86129360	86209233	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_86129415_86131867_86131961_86158384_86158450_86185566_86185600_86186825_86186870_86207922_86207996_86208225_86208302_86208760_86208824_86208951
transcript_20840.known	chr12	+	773	8	FSM	ENSMUSG00000007867.10	ENSMUST00000054565.8	773	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	68.4433327353247	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCATTTCTTCCATTCTGTC	NA	False	NA	6	True	AATAAA	-16	NA	86129336	86209232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_86129415_86131867_86131961_86158384_86158450_86186825_86186870_86207922_86207996_86208225_86208302_86208760_86208824_86208951
transcript_20847.known	chr12	+	787	9	FSM	ENSMUSG00000007867.10	ENSMUST00000223269.2	787	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	65.0661922583457	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTTCTTCCATTCTGTCC	NA	False	NA	7	True	AATAAA	-17	NA	86129381	86209233	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_86129440_86131867_86131961_86158384_86158450_86185566_86185600_86186825_86186870_86207922_86207996_86208225_86208302_86208760_86208824_86208951
transcript_20848.known	chr12	+	3160	5	FSM	ENSMUSG00000097543.2	ENSMUST00000181667.2	3160	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	6.53356717268599	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGTGACTATGTATCAAG	NA	False	NA	NA	False	NA	NA	NA	86216114	86241876	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_86216220_86216782_86217055_86217167_86217300_86218765_86218861_86239320
transcript_20852.nnic	chr12	+	1606	4	NIC	ENSMUSG00000097543.2	novel	3160	5	NA	NA	-21	-1443	combination_of_known_splicesites	FALSE	canonical	2	5	junction_3	4.49691252107735	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTCTATGATGGTTCTT	NA	False	NA	NA	False	ATTAAA	-4	NA	86216093	86240433	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_86216220_86216782_86217055_86218765_86218861_86239320
transcript_20853.nnic	chr12	+	750	4	NNC	ENSMUSG00000097543.2	novel	3160	5	NA	NA	-21	40536	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6.68331255192114	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTTCTTTGACTTCCCC	NA	False	NA	NA	False	AATGAA	-16	NA	86216093	86282412	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_86216220_86216782_86217055_86218765_86218861_86282155
transcript_20855.nnic	chr12	+	1309	3	NIC	ENSMUSG00000097543.2	novel	3160	5	NA	NA	-21	-22200	combination_of_known_splicesites	FALSE	canonical	3	11	junction_2	2.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAGAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	86216093	86219676	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_86216220_86216782_86217055_86218765
transcript_20856.nic	chr12	+	352	2	ISM	ENSMUSG00000097543.2	ENSMUST00000181667.2	3160	5	-21	24868	-21	-24868	5prime_fragment	FALSE	canonical	3	16	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGGCTTTGGCATTCTCTT	NA	False	NA	NA	False	AGTAAA	-18	NA	86216093	86217008	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_86216220_86216782
transcript_20860.known	chr12	+	4355	10	FSM	ENSMUSG00000021254.10	ENSMUST00000221368.2	4355	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_9	9.46077020329245	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGCTTATGATTGAGGTC	NA	False	NA	3	True	AATAAA	-14	NA	86288631	86338558	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_86288719_86290808_86291481_86303641_86303707_86307350_86307528_86308389_86308470_86311955_86312024_86313917_86313958_86315749_86315836_86328222_86328318_86335573
transcript_20862.known	chr12	+	3829	9	FSM	ENSMUSG00000021254.10	ENSMUST00000071106.6	3829	9	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_8	8.71421252896669	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTCTTGATATATCCT	NA	False	NA	NA	False	AATGAA	-23	NA	86288648	86338144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_86288719_86290808_86291481_86303641_86303707_86307350_86307528_86308389_86308470_86311955_86312024_86313917_86313958_86315749_86315836_86335573
transcript_20869.nnic	chr12	+	647	4	Antisense	novelGene_ENSMUSG00000097488.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGCTCCGGGATCCTAC	NA	False	NA	NA	False	AATAAA	-20	NA	86352561	86358033	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr12_+_86352655_86356744_86356838_86356921_86357039_86357689
transcript_20877.known	chr12	+	1344	6	FSM	ENSMUSG00000021255.18	ENSMUST00000167891.2	1344	6	0	0	0	0	multi-exon	FALSE	canonical	3	623	junction_2	30.0905300717684	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCCCAGCACATGGACGGA	NA	False	NA	NA	False	NA	NA	NA	86516890	86565839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594
transcript_20879.nnic	chr12	+	3657	6	NNC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	1010	0	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	240.979999170056	1627	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTCGTTCATGCGTTGTC	NA	False	NA	16	True	AATAAA	-16	NA	86517900	86568399	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_86518093_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594
transcript_20882.nnic	chr12	-	1117	5	Antisense	novelGene_ENSMUSG00000021255.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	10.6389614154766	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTTTTTCTCCAGGTCA	NA	False	NA	-23	True	ATTAAA	-14	NA	86516844	86471843	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr12_-_86472015_86474587_86474843_86476368_86476447_86508048_86508306_86516488
transcript_20885.nnic	chr12	-	862	4	Antisense	novelGene_ENSMUSG00000021255.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	10	junction_2	7.78888096369861	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTTTTTCTCCAGGTCA	NA	False	NA	-23	True	ATTAAA	-14	NA	86516844	86471843	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr12_-_86472015_86476368_86476447_86508048_86508306_86516488
transcript_20893.nnic	chr12	-	784	3	Antisense	novelGene_ENSMUSG00000021255.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	12	junction_1	7.5	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTTTTTCTCCAGGTCA	NA	False	NA	-23	True	ATTAAA	-14	NA	86516844	86471843	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr12_-_86472015_86508048_86508306_86516488
transcript_20895.nnic	chr12	-	808	3	Antisense	novelGene_ENSMUSG00000021255.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	13.5	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGGCAGCCTCTATTT	NA	False	NA	NA	False	NA	NA	NA	86516844	86478772	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr12_-_86478968_86508048_86508306_86516488
transcript_20900.known	chr12	-	3850	10	FSM	ENSMUSG00000021257.15	ENSMUST00000021682.9	3850	10	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	10.9341463112378	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTTAGCCTTGTTATTG	NA	False	NA	0	True	AATAAA	-19	NA	86773234	86747275	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_86749216_86749930_86750095_86752040_86752111_86763689_86763801_86764488_86764616_86767003_86767438_86768084_86768155_86768614_86768842_86769618_86770195_86773103
transcript_20901.nnic	chr12	+	613	5	NNC	ENSMUSG00000059114.9	novel	1854	14	NA	NA	20196	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	2.06155281280883	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGTGCTGCCGAGGTTG	NA	False	NA	NA	False	AATAAA	-21	NA	86807976	86810571	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_86808134_86808429_86808538_86809335_86809419_86809587_86809682_86810400
transcript_20906.known	chr12	-	483	2	FSM	ENSMUSG00000113555.2	ENSMUST00000222765.2	483	2	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	232	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGTACACAAAGAAATAAAAA	3781	False	NA	NA	False	NA	NA	NA	86893241	86892551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_86892971_86893177
transcript_20907.known	chr12	-	4098	1	FSM	ENSMUSG00000034168.8	ENSMUST00000038422.8	4098	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	196	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGCCCTGAGTCAGCAAA	NA	False	NA	-14	True	AATAAA	-16	NA	86931572	86927474	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_86927500_86931600
transcript_20908.known	chr12	+	4098	4	FSM	ENSMUSG00000034157.13	ENSMUST00000187814.7	4098	4	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_3	3.2659863237109	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTGGTCTATTTGCTTTG	NA	False	NA	7	True	AATAAA	-19	NA	86994116	87012136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_86994274_86999517_86999706_87007045_87007216_87008553
transcript_20912.nic	chr12	+	708	3	ISM	ENSMUSG00000034157.13	ENSMUST00000187814.7	4098	4	2	4726	2	245	5prime_fragment	FALSE	canonical	3	103	junction_1	2	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTTTAAGAGAGAGTGT	NA	False	NA	NA	False	TTTAAA	-19	NA	86994118	87007410	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_86994274_86999517_86999706_87007045
transcript_20913.nnic	chr12	-	1230	3	Antisense	novelGene_ENSMUSG00000034157.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_2	1.5	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTTTAAGTGGACCTGA	NA	False	NA	NA	False	AATAAA	-20	NA	86994109	86987770	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr12_-_86988480_86991947_86992299_86993939
transcript_20918.known	chr12	+	115	1	FSM	ENSMUSG00000080868.2	ENSMUST00000119807.2	115	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATTAAAACAAAGGATGCTG	4923	False	NA	NA	False	NA	NA	NA	87114250	87114365	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_87114200_87114400
transcript_20919.known	chr12	-	5064	21	FSM	ENSMUSG00000034126.6	ENSMUST00000037788.6	5064	21	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_16	10.2834819006016	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTTCTTGTGCTTGATT	5649	False	NA	NA	False	AATAAA	-22	NA	87194676	87153634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_87156068_87156777_87156893_87157075_87157217_87158110_87158217_87158297_87158358_87158652_87158725_87163304_87163382_87164158_87164251_87164712_87164865_87166345_87166425_87169615_87169686_87171585_87171653_87174075_87174186_87175726_87175810_87177062_87177170_87178445_87178606_87180133_87180243_87182268_87182378_87184776_87184882_87186417_87186503_87193944
transcript_20926.known	chr12	+	1656	9	FSM	ENSMUSG00000021033.12	ENSMUST00000063117.10	1656	9	0	0	0	0	multi-exon	FALSE	canonical	3	449	junction_5	40.5555175037873	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCTTTTGTCATGGACAA	NA	False	NA	13	True	NA	NA	NA	87194491	87211497	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_87194619_87204666_87204719_87205851_87205920_87206413_87206495_87206823_87206950_87208248_87208328_87208813_87208867_87209761_87209812_87210477
transcript_2093.known	chr1	+	763	3	FSM	ENSMUSG00000026032.9	ENSMUST00000027193.9	763	3	0	0	0	0	multi-exon	FALSE	canonical	3	979	junction_1	90.5	16021	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTCCCTCTAACCTCA	NA	False	NA	52	True	AATAAA	-20	NA	58625542	58635123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_58625830_58630248_58630409_58634807
transcript_20934.known	chr12	+	971	8	FSM	ENSMUSG00000021033.12	ENSMUST00000220574.2	971	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	172.56918163154	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTCCCTATATGCCTTTT	NA	False	NA	NA	False	NA	NA	NA	87194545	87210934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_87194619_87204666_87204719_87206413_87206495_87206823_87206950_87208248_87208328_87208813_87208867_87209761_87209812_87210477
transcript_20940.nic	chr12	+	589	4	ISM	ENSMUSG00000021033.12	ENSMUST00000063117.10	1656	9	-17	4759	-17	3046	5prime_fragment	FALSE	canonical	3	504	junction_3	33.9247533357118	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGGAGTTTG	NA	False	NA	NA	False	NA	NA	NA	87194474	87206738	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_87194619_87204666_87204719_87205851_87205920_87206413
transcript_20941.known	chr12	+	1571	10	FSM	ENSMUSG00000021033.12	ENSMUST00000222885.2	1571	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	206.294707088765	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGTTCGATATATCTTCC	NA	False	NA	16	True	ATTAAA	-21	NA	87193938	87211098	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_87194283_87202246_87202344_87204666_87204719_87205851_87205920_87206413_87206495_87206823_87206950_87208248_87208328_87208813_87208867_87209761_87209812_87210477
transcript_20943.known	chr12	+	654	3	FSM	ENSMUSG00000090812.9	ENSMUST00000183251.8	654	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAACATGAGGCATTGCT	NA	False	NA	NA	False	AATATA	-9	NA	87246496	87255954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_87246571_87249811_87249911_87255473
transcript_20949.nnic	chr12	-	830	4	NNC	ENSMUSG00000072919.5	novel	1626	8	NA	NA	8379	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_2	15.7973274814304	40	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACTAGAAAATGATAAAATT	NA	False	NA	NA	False	NA	NA	NA	87271951	87267813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_87268219_87269818_87269953_87270931_87271084_87271812
transcript_20952.nnic	chr12	-	919	4	NNC	ENSMUSG00000072919.5	novel	1626	8	NA	NA	8379	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_2	1.69967317119759	168	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACTAGAAAATGATAAAATT	NA	False	NA	NA	False	NA	NA	NA	87271951	87267813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_87268219_87269818_87270042_87270931_87271084_87271812
transcript_20955.nnic	chr12	-	676	4	NNC	ENSMUSG00000072919.5	novel	1101	6	NA	NA	8379	61	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_2	15.7973274814304	75	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCAGTATTCTTGGGTG	NA	False	NA	-9	True	AATAAA	-19	NA	87271951	87267967	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_87268219_87269818_87269953_87270931_87271084_87271812
transcript_20956.nic	chr12	-	949	4	ISM	ENSMUSG00000072919.5	ENSMUST00000021423.8	1101	6	8376	-61	8376	61	3prime_fragment	FALSE	canonical	2	3	junction_3	18.6607133363712	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCAGTATTCTTGGGTG	NA	False	NA	-9	True	AATAAA	-19	NA	87271954	87267967	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_-_87268219_87269818_87270042_87270931_87271084_87271631
transcript_20957.nnic	chr12	-	765	4	NNC	ENSMUSG00000072919.5	novel	1101	6	NA	NA	8379	61	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_2	1.69967317119759	320	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCAGTATTCTTGGGTG	NA	False	NA	-9	True	AATAAA	-19	NA	87271951	87267967	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_87268219_87269818_87270042_87270931_87271084_87271812
transcript_2096.known	chr1	+	2010	5	FSM	ENSMUSG00000026031.16	ENSMUST00000114309.8	2010	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.6393596310755	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTTTGTGCATTTGCTTT	3046	False	NA	NA	False	NA	NA	NA	58752452	58772386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_58752819_58765464_58765892_58768214_58768321_58770310_58770447_58771411
transcript_20961.nnic	chr12	-	415	3	NNC	ENSMUSG00000072919.5	novel	656	5	NA	NA	8379	7395	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	22.5	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGCTTGTCTTTATGAG	NA	False	NA	NA	False	CATAAA	-18	NA	87271951	87260418	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_87260543_87270931_87271084_87271812
transcript_20963.nnic	chr12	-	542	3	NNC	ENSMUSG00000072919.5	novel	1101	6	NA	NA	8379	61	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	22.5	21	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCAGTATTCTTGGGTG	NA	False	NA	-9	True	AATAAA	-19	NA	87271951	87267967	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_87268219_87270931_87271084_87271812
transcript_20965.known	chr12	-	2524	20	FSM	ENSMUSG00000021038.18	ENSMUST00000072744.15	2524	20	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	8.24352343784865	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTTCCCCATCTGGTTA	NA	False	NA	-10	True	AATAAA	-21	NA	87313030	87285646	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_87286611_87288010_87288116_87288710_87288801_87289259_87289347_87291228_87291319_87291613_87291656_87292902_87293038_87293592_87293669_87296161_87296236_87297250_87297279_87298489_87298593_87299408_87299443_87299939_87300033_87301003_87301061_87303258_87303324_87304188_87304228_87305854_87305996_87307405_87307509_87310678_87310772_87312925
transcript_20971.known	chr12	-	1790	12	FSM	ENSMUSG00000021038.18	ENSMUST00000222350.2	1790	12	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	4.43874749663044	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCATCTTATTTACTTGT	NA	False	NA	NA	False	NA	NA	NA	87313027	87295303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_87296236_87297250_87297279_87298489_87298593_87299408_87299443_87299939_87300033_87301003_87301061_87303258_87303324_87304188_87304228_87305854_87305996_87307405_87307509_87310678_87310772_87312925
transcript_20988.known	chr12	+	2252	1	FSM	ENSMUSG00000021037.8	ENSMUST00000222728.2	2252	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAAAGAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87313483	87315735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_87313500_87315700
transcript_20989.known	chr12	+	1377	9	FSM	ENSMUSG00000021037.8	ENSMUST00000021425.8	1377	9	0	0	0	0	multi-exon	TRUE	canonical	3	2699	junction_7	143.152890295656	11365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCATTTCTTACAATCTAT	NA	False	NA	-2	True	AGTAAA	-16	NA	87313471	87320753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_87313696_87314928_87315120_87316648_87316732_87317110_87317229_87318112_87318202_87319345_87319475_87319896_87319999_87320220_87320273_87320364
transcript_2099.known	chr1	+	378	2	FSM	ENSMUSG00000026031.16	ENSMUST00000124567.2	378	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAATGCCTCCTTGTTAA	1286	False	NA	NA	False	ATTAAA	-18	NA	58750692	58753048	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_58750752_58752729
transcript_20992.known	chr12	-	2526	6	FSM	ENSMUSG00000050671.13	ENSMUST00000125733.8	2526	6	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	6.95701085237043	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGATAAAGGATTTGGGG	7669	False	NA	1	True	AATAAA	-21	NA	87346479	87325411	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_87326977_87329073_87329158_87329419_87329561_87331799_87332161_87333668_87333912_87346347
transcript_20993.nic	chr12	-	1008	2	ISM	ENSMUSG00000050671.13	ENSMUST00000125733.8	2526	6	-97	7721	-97	-3939	5prime_fragment	FALSE	canonical	3	97	junction_1	0	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTATCTGTCTGCTTGGTT	7572	False	NA	NA	False	AAGAAA	-38	NA	87346576	87333132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_-_87333912_87346347
transcript_21.known	ERCC-00044	+	1149	1	FSM	ERCC-00044A	DQ459424	1149	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	255	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	AAAAAG	-27	NA	0	1149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00044_+_0_1100
transcript_2100.known	chr1	+	1100	2	FSM	ENSMUSG00000026031.16	ENSMUST00000123553.2	1100	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCTTTGGCTCATTCCAT	3054	False	NA	NA	False	NA	NA	NA	58752460	58762229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_58752819_58761487
transcript_21000.known	chr12	-	704	4	FSM	ENSMUSG00000021036.11	ENSMUST00000170720.2	704	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	261.40942769703	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTATTCTACTTGTGAA	NA	False	NA	-11	True	ATTAAA	-14	NA	87375387	87356412	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_87356795_87359471_87359602_87360824_87360961_87375331
transcript_21011.known	chr12	-	6710	12	FSM	ENSMUSG00000021036.11	ENSMUST00000021424.5	6710	12	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_2	40.0427457550466	566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTGCCTTTATTCATTCA	8696	False	NA	NA	False	AATAAA	-16	NA	87435129	87351831	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_87356795_87359471_87359602_87360824_87360961_87382805_87382933_87388310_87388531_87389417_87389524_87393481_87393576_87397034_87397160_87402299_87402449_87403321_87403477_87415704_87415900_87434819
transcript_2102.known	chr1	+	676	2	FSM	ENSMUSG00000026031.16	ENSMUST00000149874.8	676	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTCAAATGCCTCCTTGT	1260	False	NA	NA	False	ATTAAA	-15	NA	58750666	58753045	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_58750752_58752454
transcript_21024.known	chr12	-	2154	8	FSM	ENSMUSG00000079036.11	ENSMUST00000161712.8	2154	8	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_6	99.4164606745846	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACCTGTATCTGTCTTT	NA	False	NA	-56	True	AATAAA	-19	NA	87490606	87474849	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_87476041_87478169_87478364_87480888_87480980_87485166_87485330_87487075_87487185_87488040_87488114_87488412_87488551_87490411
transcript_2103.known	chr1	+	2585	9	FSM	ENSMUSG00000026029.15	ENSMUST00000027189.15	2585	9	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_6	4.14578098794425	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAATTCTTCCAGGTTAG	2924	False	NA	NA	False	ATTAAA	-17	NA	58834532	58886662	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_58834898_58863073_58863407_58866365_58866472_58868031_58868171_58868254_58868309_58870764_58870827_58872791_58872934_58883502_58884005_58885780
transcript_21031.known	chr12	-	2019	7	FSM	ENSMUSG00000079036.11	ENSMUST00000160113.8	2019	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_5	112.096312755297	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGTATCTGTCTTTGAG	NA	False	NA	-53	True	AATAAA	-22	NA	87490596	87474846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_87476041_87478169_87478309_87480888_87480980_87485166_87485330_87487075_87487185_87488412_87488551_87490411
transcript_21036.known	chr12	-	1883	6	FSM	ENSMUSG00000079036.11	ENSMUST00000162247.8	1883	6	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_2	71.1983145867934	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGTATCTGTCTTTGAG	NA	False	NA	-53	True	AATAAA	-22	NA	87490598	87474846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_87476041_87478169_87478309_87480888_87480980_87485166_87485330_87487075_87487185_87490411
transcript_21037.known	chr12	-	3857	6	FSM	ENSMUSG00000079036.11	ENSMUST00000162961.8	3857	6	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_2	59.8431282604778	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTGTTTTGCCTTCTT	NA	False	NA	-2	True	ATTAAA	-15	NA	87490609	87472938	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_87476041_87478169_87478364_87480888_87480980_87485166_87485330_87487075_87487185_87490411
transcript_2104.known	chr1	+	1917	9	FSM	ENSMUSG00000026029.15	ENSMUST00000165549.8	1917	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6.17960354715414	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTATGTATGTTTTGTTT	NA	False	NA	3	True	AATATA	-16	NA	58841660	58886167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_58841853_58863073_58863407_58866365_58866472_58868031_58868171_58868254_58868309_58870764_58870827_58872791_58872934_58883502_58884005_58885780
transcript_21049.known	chr12	-	1423	4	FSM	ENSMUSG00000079036.11	ENSMUST00000160850.2	1423	4	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_3	44.3195467285285	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCATAAAAACTAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	87490609	87480026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_87480980_87485166_87485330_87487075_87487185_87490411
transcript_2105.known	chr1	-	828	2	FSM	ENSMUSG00000026028.13	ENSMUST00000173719.2	828	2	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGAGAGCTTGCTGTGCT	1547	False	NA	NA	False	NA	NA	NA	59012589	58985060	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_58985695_59012395
transcript_21051.known	chr12	-	1319	3	FSM	ENSMUSG00000079036.11	ENSMUST00000162986.2	1319	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	136	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGAAGAGAAACAACC	NA	False	NA	NA	False	NA	NA	NA	87490603	87480015	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_87480980_87485166_87485330_87490411
transcript_21052.known	chr12	-	1335	1	FSM	ENSMUSG00000079036.11	ENSMUST00000091090.5	1335	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	648	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87490787	87489452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_87489500_87490800
transcript_21053.known	chr12	-	479	1	FSM	ENSMUSG00000021039.10	ENSMUST00000223119.2	479	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	215	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	87519039	87518560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_87518600_87519000
transcript_21054.known	chr12	+	362	4	FSM	ENSMUSG00000021040.16	ENSMUST00000160880.2	362	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1761.37452639188	462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTTTTATTTGAAATGAGG	NA	False	NA	36	True	AATAAA	-23	NA	87490715	87496694	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_87490797_87494333_87494393_87496069_87496171_87496573
transcript_21055.known	chr12	+	335	4	FSM	ENSMUSG00000021040.16	ENSMUST00000077462.8	335	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	1742.05708542771	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTGAGACTTTTTCTACA	NA	False	NA	16	True	AATAAA	-3	NA	87490705	87496674	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_87490797_87494333_87494369_87496062_87496171_87496573
transcript_21056.known	chr12	+	802	3	FSM	ENSMUSG00000021040.16	ENSMUST00000160488.8	802	3	0	0	0	0	multi-exon	FALSE	canonical	3	3495	junction_2	154.5	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACACGTTTTTATTTGAAAT	NA	False	NA	32	True	AATAAA	-19	NA	87490681	87496690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_87490797_87494333_87494393_87496062
transcript_21057.known	chr12	-	2232	14	FSM	ENSMUSG00000021039.10	ENSMUST00000021428.9	2232	14	0	0	0	0	multi-exon	FALSE	canonical	3	814	junction_13	97.7330623652505	1262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTGTTTATTTAGTGGA	NA	False	NA	-2	True	AATAAA	-20	NA	87519044	87496679	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_87497487_87497575_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87519017
transcript_21058.known	chr12	+	1873	2	FSM	ENSMUSG00000079034.3	ENSMUST00000110152.3	1873	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATGCAGTCTGATGGTTT	NA	False	NA	NA	False	AATAAA	-31	NA	87561085	87565036	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_87561276_87563353
transcript_21060.known	chr12	+	1850	2	FSM	ENSMUSG00000092019.5	ENSMUST00000164838.3	1850	2	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAAAAAGATTAATGC	NA	False	NA	NA	False	AATAAA	-18	NA	87665638	87669725	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_87665828_87668064
transcript_21062.known	chr12	+	1766	2	FSM	ENSMUSG00000072905.6	ENSMUST00000110147.3	1766	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACATTTTTTTCTTTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	87840841	87844629	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_87841033_87843054
transcript_21068.nnic	chr12	-	1460	2	Genic_Genomic	ENSMUSG00000095799.2	novel	435	1	NA	NA	-2771	525	multi-exon	FALSE	canonical	3	16	junction_1	0	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAAGTAAATCTCTTCTG	NA	False	NA	NA	False	AATAAA	-3	NA	88219641	88215910	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr12_-_88217181_88219451
transcript_21069.nnic	chr12	-	1030	2	Genic_Genomic	ENSMUSG00000095799.2	novel	435	1	NA	NA	-2771	95	multi-exon	FALSE	canonical	3	16	junction_1	0	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTGTGTCTTGTTAATGC	NA	False	NA	NA	False	AATAAA	-14	NA	88219641	88216340	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr12_-_88217181_88219451
transcript_2107.known	chr1	-	6189	16	FSM	ENSMUSG00000026028.13	ENSMUST00000027186.12	6189	16	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_7	7.62335592475883	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTCTCCTTGTGATTTT	1547	False	NA	0	True	AATAAA	-41	NA	59012589	58939607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_58943342_58945864_58945971_58947681_58947949_58949108_58949408_58950794_58950996_58951344_58951422_58954844_58954983_58957930_58958006_58958379_58958511_58960232_58960312_58960838_58961049_58962680_58962798_58965809_58965887_58974904_58975100_58985405_58985695_59012395
transcript_21070.known	chr12	-	1840	2	FSM	ENSMUSG00000079029.3	ENSMUST00000101168.4	1840	2	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGAAAAAGAAAAAGATCAAT	NA	False	NA	NA	False	AATAAA	-16	NA	88241270	88237409	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_88239059_88241079
transcript_21072.known	chr12	-	1856	2	FSM	ENSMUSG00000093847.3	ENSMUST00000218054.3	1856	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATGCAGTCTGATGGTCT	NA	False	NA	NA	False	AATAAA	-31	NA	88290796	88286891	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_88288562_88290610
transcript_21073.nnic	chr12	-	557	3	NNC	ENSMUSG00000113490.2	novel	324	2	NA	NA	540	6280	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGGTGTGATGGTGCAAG	NA	False	NA	NA	False	NA	NA	NA	88307004	88300400	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_88300538_88305116_88305191_88306658
transcript_21076.known	chr12	+	2158	11	FSM	ENSMUSG00000021044.16	ENSMUST00000101165.9	2158	11	0	0	0	0	multi-exon	TRUE	canonical	3	29	junction_1	14.3544418212622	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGACTGTTCCTTCTCAA	NA	False	NA	10	True	AATAAA	-23	NA	88327323	88428489	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_88327366_88335104_88335251_88338464_88338549_88368742_88368947_88397790_88397950_88407852_88408012_88413410_88413528_88422248_88422399_88423506_88423705_88425779_88425974_88427784
transcript_2108.known	chr1	+	2960	12	FSM	ENSMUSG00000026027.14	ENSMUST00000027185.11	2960	12	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_7	10.2964328252857	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGGTTTTCTTCATCTAT	NA	False	NA	NA	False	AATAAA	-15	NA	59012680	59034874	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_59013010_59016117_59016225_59019092_59019174_59024447_59024548_59027664_59027787_59028848_59028958_59030171_59030296_59031362_59031535_59031809_59031915_59032051_59032297_59032719_59032763_59033451
transcript_21080.known	chr12	+	2253	11	FSM	ENSMUSG00000021044.16	ENSMUST00000222695.2	2253	11	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	17.7822945651004	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGACTGTTCCTTCTCAAT	NA	False	NA	11	True	AATAAA	-24	NA	88327417	88428490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_88327554_88335104_88335251_88338464_88338549_88368742_88368947_88397790_88397950_88407852_88408012_88413410_88413528_88422248_88422399_88423506_88423705_88425779_88425974_88427784
transcript_21082.known	chr12	+	2199	11	FSM	ENSMUSG00000021044.16	ENSMUST00000166940.3	2199	11	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	20.9752234791432	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGACTGTTCCTTCTCA	NA	False	NA	9	True	AATAAA	-22	NA	88327658	88428488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_88327743_88335104_88335251_88338464_88338549_88368742_88368947_88397790_88397950_88407852_88408012_88413410_88413528_88422248_88422399_88423506_88423705_88425779_88425974_88427784
transcript_2109.known	chr1	+	2070	11	FSM	ENSMUSG00000026027.14	ENSMUST00000123301.8	2070	11	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_7	23.192455669894	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGAGAAGATGCAATTT	NA	False	NA	NA	False	ATTAAA	-16	NA	59012680	59034156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_59013010_59016117_59016225_59019092_59019174_59024447_59024548_59027664_59027787_59028848_59028958_59030171_59030296_59031809_59031915_59032051_59032297_59032719_59032763_59033451
transcript_21093.known	chr12	+	3214	2	FSM	ENSMUSG00000021044.16	ENSMUST00000221630.2	3214	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAAAAGAATGCAAATAA	NA	False	NA	NA	False	NA	NA	NA	88327584	88338160	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_88327743_88335104
transcript_21098.known	chr12	-	4807	26	FSM	ENSMUSG00000061533.17	ENSMUST00000141429.8	4807	26	0	0	0	0	multi-exon	TRUE	canonical	3	41	junction_10	9.02405673741029	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGAATGATGCGTCTGTT	6152	False	NA	-5	True	AATAAA	-19	NA	91351183	90965265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_90966434_90975606_90975710_90986065_90986180_90989173_90989252_91029915_91029940_91050447_91050498_91180338_91180532_91197568_91197629_91200817_91200995_91222348_91222514_91226759_91227411_91233509_91233861_91256262_91256415_91260807_91260941_91262976_91263052_91265764_91265852_91292288_91292406_91300024_91300098_91305832_91305925_91314299_91314416_91315523_91315651_91331133_91331221_91333116_91333279_91336835_91336971_91348421_91348563_91351007
transcript_21099.known	chr12	-	1750	14	FSM	ENSMUSG00000061533.17	ENSMUST00000127802.8	1750	14	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_11	16.8824687613894	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTAGTTTTGGAGGCAA	6152	False	NA	NA	False	AATAAA	-17	NA	91351183	91256166	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_91256415_91260807_91260941_91262976_91263052_91265764_91265852_91292288_91292406_91300024_91300098_91305832_91305925_91314299_91314416_91315523_91315651_91331133_91331221_91333116_91333279_91336854_91336971_91348421_91348563_91351007
transcript_21100.known	chr12	-	6064	9	FSM	ENSMUSG00000020962.15	ENSMUST00000021345.14	6064	9	0	0	0	0	multi-exon	FALSE	canonical	3	931	junction_7	74.7277349783867	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTGTATTTTGCAGTTT	1245	False	NA	0	True	AATAAA	-23	NA	91556783	91522035	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_91526626_91529682_91529773_91534313_91534635_91534910_91535045_91536536_91536613_91539339_91539408_91542357_91542566_91553473_91553576_91556308
transcript_21103.known	chr12	-	6300	21	FSM	ENSMUSG00000020964.15	ENSMUST00000021347.12	6300	21	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_17	38.6834589973544	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTGGGCGTGTGCCAC	NA	False	NA	-24	True	AATAAA	-18	NA	91815931	91772816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_91776828_91778650_91778780_91780605_91780779_91781392_91781468_91781747_91781914_91782539_91782689_91782994_91783083_91784055_91784119_91784992_91785071_91786815_91786885_91790307_91790365_91791593_91791749_91792070_91792153_91793278_91793339_91793425_91793480_91797460_91797624_91798342_91798449_91799828_91799997_91808411_91808629_91809999_91810038_91815732
transcript_21106.known	chr12	-	1402	12	FSM	ENSMUSG00000020964.15	ENSMUST00000167594.8	1402	12	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_8	33.3912444603607	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCCTGTCTTCATGTGAA	NA	False	NA	NA	False	AATAAA	-21	NA	91815904	91786754	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_91786885_91790307_91790365_91791593_91791749_91792070_91792153_91793278_91793339_91793425_91793480_91797460_91797624_91798342_91798449_91799828_91799997_91808411_91808629_91809999_91810038_91815732
transcript_21107.known	chr12	-	1484	4	FSM	ENSMUSG00000020964.15	ENSMUST00000172246.8	1484	4	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_2	17.2819751957543	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91815913	91798948	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_91799997_91808411_91808629_91809999_91810038_91815732
transcript_21108.known	chr12	-	617	3	FSM	ENSMUSG00000020964.15	ENSMUST00000169843.2	617	3	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_1	20	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTTAGTGTTACATGACC	NA	False	NA	NA	False	AATAAA	-18	NA	91815914	91808231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_91808629_91809999_91810038_91815732
transcript_21109.known	chr12	-	5544	21	FSM	ENSMUSG00000020964.15	ENSMUST00000167466.2	5544	21	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_17	69.9646339231472	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91815903	91773394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_91776828_91778650_91778780_91780605_91780779_91781392_91781468_91781747_91781914_91782539_91782689_91782994_91783083_91784055_91784119_91784992_91785071_91786815_91786885_91790307_91790365_91791593_91791749_91792070_91792153_91793278_91793339_91793425_91793480_91797460_91797624_91798342_91798449_91799978_91799997_91808411_91808629_91809999_91810038_91815732
transcript_2111.known	chr1	+	1348	7	FSM	ENSMUSG00000026027.14	ENSMUST00000114296.8	1348	7	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	9.28110386155057	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCAGCTTATGTCGTGTT	NA	False	NA	NA	False	AATAAA	-17	NA	59012680	59030671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_59013010_59016117_59016225_59019092_59019174_59024447_59024548_59027664_59027787_59028848_59028958_59030171
transcript_21110.known	chr12	-	547	1	FSM	ENSMUSG00000113643.2	ENSMUST00000222953.2	547	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAATTCAGCATAAAATAAA	NA	False	NA	NA	False	AAGAAA	-31	NA	92128213	92127666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_92127700_92128200
transcript_21111.known	chr12	-	3832	17	FSM	ENSMUSG00000021003.11	ENSMUST00000021390.9	3832	17	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	6.15648793956424	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTGAGAATTTGCATTTG	NA	False	NA	NA	False	NA	NA	NA	98225718	98168552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_98170347_98173652_98173730_98174969_98175134_98179240_98179419_98180591_98180743_98182509_98182597_98188858_98188949_98193426_98193555_98197674_98197800_98200500_98200657_98208900_98209032_98212512_98212552_98218268_98218409_98220423_98220538_98222885_98222950_98223130_98223200_98225393
transcript_21114.known	chr12	+	1248	1	FSM	ENSMUSG00000112860.2	ENSMUST00000218708.2	1248	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGACCTCAAGTGTGAAGTC	NA	False	NA	NA	False	NA	NA	NA	98225318	98226566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_98225300_98226600
transcript_21115.known	chr12	+	2052	12	FSM	ENSMUSG00000021007.15	ENSMUST00000048402.12	2052	12	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	12.115149999242	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCACATATTTATTATTGC	NA	False	NA	17	True	NA	NA	NA	98594415	98636074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_98594594_98598221_98598297_98600482_98600579_98603824_98603873_98614607_98614742_98624471_98624906_98625808_98625876_98628230_98628347_98629423_98629478_98630486_98630565_98635090_98635149_98635360
transcript_21118.known	chr12	+	1913	11	FSM	ENSMUSG00000021007.15	ENSMUST00000101146.4	1913	11	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	15.3766056072203	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCACATATTTATTAT	NA	False	NA	14	True	NA	NA	NA	98594455	98636071	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_98594594_98598221_98598297_98603824_98603873_98614607_98614742_98624471_98624906_98625808_98625876_98628230_98628347_98629423_98629478_98630486_98630565_98635090_98635149_98635360
transcript_21120.known	chr12	+	1541	10	FSM	ENSMUSG00000021007.15	ENSMUST00000101144.10	1541	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	23.7954243967663	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCACATATTTATTATTGC	NA	False	NA	17	True	NA	NA	NA	98594425	98636074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_98594594_98598221_98598297_98600482_98600579_98603824_98603873_98614607_98614742_98628230_98628347_98629423_98629478_98630486_98630565_98635090_98635149_98635360
transcript_21127.known	chr12	+	938	2	FSM	ENSMUSG00000021007.15	ENSMUST00000130136.2	938	2	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	0	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGGTAAAGAGTG	NA	False	NA	NA	False	NA	NA	NA	98594448	98599014	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_98594594_98598221
transcript_21128.known	chr12	+	2193	1	FSM	ENSMUSG00000021007.15	ENSMUST00000222195.2	2193	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	98594425	98596618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_98594400_98596600
transcript_21129.known	chr12	-	2341	3	FSM	ENSMUSG00000021009.16	ENSMUST00000222071.2	2341	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	13.5	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAACCTTG	NA	False	NA	NA	False	NA	NA	NA	98700904	98679648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_98681453_98699732_98700094_98700728
transcript_2113.known	chr1	-	2131	13	FSM	ENSMUSG00000072295.8	ENSMUST00000097080.4	2131	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	3.19722101554181	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAACATAGCACATATGT	NA	False	NA	NA	False	ATTAAA	-14	NA	59134059	59089664	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_59090445_59091654_59091693_59097814_59097879_59099730_59099837_59101554_59101690_59105308_59105389_59106935_59107005_59107841_59107887_59108875_59109002_59114155_59114302_59115829_59115882_59117041_59117129_59133656
transcript_21130.known	chr12	+	3514	17	FSM	ENSMUSG00000021012.17	ENSMUST00000110105.10	3514	17	0	0	0	0	multi-exon	FALSE	canonical	3	883	junction_12	209.53098667023	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGTGTTTAATAATGTGA	NA	False	NA	NA	False	AATAAA	-16	NA	98713247	98754012	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_98713418_98713738_98713782_98719036_98719152_98722443_98722485_98723267_98723464_98724770_98725201_98725977_98726139_98726568_98726670_98730081_98730238_98740503_98740579_98745366_98745527_98746306_98746540_98749840_98749962_98751174_98751312_98751576_98751666_98751893_98752001_98752833
transcript_21133.known	chr12	+	2272	14	FSM	ENSMUSG00000021013.17	ENSMUST00000085109.10	2272	14	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_7	3.54347470962493	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACACTTTTCACTTTTCA	NA	False	NA	NA	False	AATAAA	-10	NA	98886832	98949491	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_98887043_98908476_98908598_98909561_98909626_98909720_98909881_98910083_98910174_98912827_98912873_98923539_98923626_98927660_98927749_98930755_98930867_98940900_98941041_98942235_98942411_98942685_98942809_98946060_98946145_98948716
transcript_21138.known	chr12	+	345	1	FSM	ENSMUSG00000062582.7	ENSMUST00000076166.7	345	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	191	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACAAGAAAGTTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	99013488	99013833	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_99013500_99013800
transcript_21143.known	chr12	-	635	6	FSM	ENSMUSG00000021176.7	ENSMUST00000221929.2	635	6	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	32.8937684067971	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATGCGGCATGACCCATAA	NA	False	NA	NA	False	AATAAA	-19	NA	99849682	99659303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_99659462_99820868_99820960_99821796_99821899_99844615_99844662_99849020_99849117_99849540
transcript_21144.known	chr12	-	2068	6	FSM	ENSMUSG00000021176.7	ENSMUST00000046485.5	2068	6	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_2	7.87400787401181	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCATATTTATGGTATGTA	NA	False	NA	-6	True	ATTAAA	-23	NA	99849701	99683790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_99685363_99820868_99820960_99821796_99821899_99844615_99844662_99849020_99849117_99849540
transcript_21148.known	chr12	+	2036	16	FSM	ENSMUSG00000021177.17	ENSMUST00000153627.8	2036	16	0	0	0	0	multi-exon	FALSE	canonical	3	362	junction_1	45.8998910674089	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTACAGGCCTGGAATGA	NA	False	NA	19	True	ATTAAA	-19	NA	99850795	99921478	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_99850812_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99901263_99901367_99911498_99911608_99921221
transcript_21155.nic	chr12	+	1859	14	NIC	ENSMUSG00000021177.17	novel	3945	14	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_13	129.038226527357	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTACTGTGAGACCTTTA	NA	False	NA	3	True	NA	NA	NA	99850740	99885563	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_99850812_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99885326
transcript_21172.known	chr12	+	3945	14	FSM	ENSMUSG00000021177.17	ENSMUST00000151019.8	3945	14	0	0	0	0	multi-exon	FALSE	canonical	3	362	junction_1	46.3484359476444	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	GGGGCT	-25	NA	99850775	99903621	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_99850812_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99901263
transcript_21173.known	chr12	+	2019	15	FSM	ENSMUSG00000021177.17	ENSMUST00000021594.5	2019	15	0	0	0	0	multi-exon	FALSE	canonical	3	436	junction_14	30.3943469502243	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGTGTACAGGCCTGG	NA	False	NA	14	True	ATTAAA	-14	NA	99857431	99921473	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99901263_99901367_99911498_99911608_99921221
transcript_21174.known	chr12	+	329	2	FSM	ENSMUSG00000021177.17	ENSMUST00000220685.2	329	2	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTACTGTGAGACCTTTA	NA	False	NA	3	True	NA	NA	NA	99881724	99885563	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_99881817_99885326
transcript_21177.known	chr12	+	1591	11	FSM	ENSMUSG00000021178.10	ENSMUST00000021595.10	1591	11	0	0	0	0	multi-exon	FALSE	canonical	3	1446	junction_1	298.758363899657	10027	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGGGAAGAGTTCATTTT	3973	False	NA	12	True	NA	NA	NA	100076412	100089664	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_100076471_100078589_100078644_100079314_100079412_100081096_100081222_100081678_100081865_100082045_100082175_100082957_100083055_100085331_100085522_100086245_100086398_100087251_100087407_100089316
transcript_21178.known	chr12	-	3718	14	FSM	ENSMUSG00000021179.9	ENSMUST00000021596.9	3718	14	0	0	0	0	multi-exon	TRUE	canonical	2	41	junction_5	13.3828469211889	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGTGCAGCTTCTTATT	8556	False	NA	-5	True	GATAAA	-15	NA	100125907	100091710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_100091991_100092459_100092532_100095553_100095693_100096616_100097543_100098409_100098797_100100615_100100792_100103916_100104038_100106263_100106398_100108151_100108558_100109997_100110449_100112128_100112288_100116075_100116310_100117469_100117594_100125798
transcript_2118.known	chr1	-	1823	13	FSM	ENSMUSG00000038079.15	ENSMUST00000087475.11	1823	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	58.3887237020604	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGACAAGCTTTATTAACTG	4340	False	NA	-17	True	AATAAA	-17	NA	59158965	59139755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59156489_59156501_59157133_59157166_59158861
transcript_21183.known	chr12	+	1984	3	FSM	ENSMUSG00000072884.11	ENSMUST00000146364.8	1984	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGCCTTGGTCATGGTG	NA	False	NA	NA	False	NA	NA	NA	100154226	100159799	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_100154607_100155149_100155252_100158297
transcript_21187.known	chr12	+	4115	6	FSM	ENSMUSG00000001175.17	ENSMUST00000110082.11	4115	6	0	0	0	0	multi-exon	FALSE	canonical	3	3420	junction_5	211.830687106472	6710	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTGTGAACTGTGTAGGT	9165	False	NA	27	True	AATAAA	-24	NA	100165693	100176073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
transcript_21188.known	chr12	+	1230	4	FSM	ENSMUSG00000113679.2	ENSMUST00000220721.2	1230	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	5.79271573232759	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTAGTCAAGTGCCTCG	NA	False	NA	NA	False	ATTAAA	-21	NA	100256543	100268574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_100256684_100261887_100261990_100267215_100267355_100267725
transcript_2119.known	chr1	-	1869	13	FSM	ENSMUSG00000038079.15	ENSMUST00000094917.10	1869	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	71.220851737551	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTATTAACTGAAGGTTT	4052	False	NA	-10	True	AATAAA	-24	NA	59159253	59139748	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59156489_59156501_59157133_59157166_59159110
transcript_21190.known	chr12	+	4791	4	FSM	ENSMUSG00000113679.2	ENSMUST00000223300.2	4791	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.49691252107735	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAAAAGTTAAACTTAAA	NA	False	NA	NA	False	AATAAA	-13	NA	100242867	100267167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_100242952_100256483_100256684_100261887_100261990_100262762
transcript_21191.known	chr12	+	724	3	FSM	ENSMUSG00000113679.2	ENSMUST00000223440.2	724	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGTCTGAGCTCTGCTCT	NA	False	NA	NA	False	AAAACA	-15	NA	100256514	100263652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_100256676_100261887_100261990_100263191
transcript_21193.nic	chr12	-	1286	8	NIC	ENSMUSG00000021180.10	novel	1039	8	NA	NA	-62	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	9.9979589753844	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAACGTGTTTATAAAC	NA	False	NA	NA	False	NA	NA	NA	100691441	100560642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_-_100560824_100562073_100562178_100564148_100564233_100582255_100582364_100585784_100585901_100620529_100620749_100644776_100644849_100691039
transcript_21197.known	chr12	-	403	1	FSM	ENSMUSG00000113113.2	ENSMUST00000223227.2	403	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3582	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTAATCTGTTATGCCATA	NA	False	NA	NA	False	AAAACA	-13	NA	100711194	100710791	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_100710800_100711200
transcript_21198.known	chr12	+	3295	13	FSM	ENSMUSG00000021185.17	ENSMUST00000069782.11	3295	13	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_10	4.43471156521669	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAATAGATGACT	NA	False	NA	NA	False	GATAAA	-19	NA	100745315	100838869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_100745570_100795857_100795985_100801443_100801595_100804758_100804958_100807629_100807781_100808901_100809025_100810988_100811190_100816371_100816633_100819472_100819573_100823179_100823329_100825791_100825912_100833362_100833515_100837562
transcript_2120.nic	chr1	-	1860	13	NIC	ENSMUSG00000038079.15	novel	1869	13	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	71.3903588261982	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTATTAACTGAAGGTTT	4016	False	NA	-10	True	AATAAA	-24	NA	59159289	59139748	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59156489_59156501_59157133_59157166_59159155
transcript_21201.known	chr12	+	803	4	FSM	ENSMUSG00000097121.3	ENSMUST00000221044.2	803	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	3.39934634239519	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTGTTTGGTTTAGTT	NA	False	NA	NA	False	AATAAA	-13	NA	101050000	101054438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_101050285_101050542_101050759_101052446_101052612_101054300
transcript_21202.known	chr12	+	706	3	FSM	ENSMUSG00000097121.3	ENSMUST00000221614.2	706	3	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	1	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTGGTTTAGTTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	101049936	101054442	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_101050285_101050542_101050759_101054300
transcript_21203.nic	chr12	-	1634	3	ISM	ENSMUSG00000041846.16	ENSMUST00000222956.2	6009	5	6076	0	952	0	3prime_fragment	FALSE	canonical	3	499	junction_2	93	330	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTATTAATTGTATGTTTC	7283	False	NA	-24	True	AATAAA	-25	NA	101008852	101005770	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_-_101007039_101008083_101008311_101008713
transcript_21205.nic	chr12	-	1103	3	ISM	ENSMUSG00000041846.16	ENSMUST00000222956.2	6009	5	6076	531	952	-128	3prime_fragment	FALSE	canonical	3	499	junction_2	93	64	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTGGTCATTTGTGTCAT	7283	False	NA	0	True	ATTAAA	-18	NA	101008852	101006301	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_-_101007039_101008083_101008311_101008713
transcript_21207.known	chr12	+	2431	2	FSM	ENSMUSG00000097121.3	ENSMUST00000180800.2	2431	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAAGTGACTTTCAAG	NA	False	NA	NA	False	AATAAA	-6	NA	101048739	101055186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_101050285_101054300
transcript_21210.known	chr12	-	5829	11	FSM	ENSMUSG00000021186.10	ENSMUST00000021603.9	5829	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	1.74355957741627	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATACATGGCATGTAAAA	NA	False	NA	NA	False	AATAAA	-43	NA	101785314	101712823	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_101717163_101723514_101723711_101726959_101727087_101728060_101728184_101731414_101731535_101734651_101734769_101737503_101737627_101775974_101776230_101778412_101778465_101780800_101780856_101784992
transcript_21211.known	chr12	-	1876	11	FSM	ENSMUSG00000021188.15	ENSMUST00000177536.8	1876	11	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_10	4.77912125813941	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATCAAGAAACTGAAAGAAGA	7565	False	NA	NA	False	GATAAA	-41	NA	101879382	101852478	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_101852536_101853066_101853280_101855963_101856051_101856836_101856878_101859689_101860053_101860520_101860687_101861909_101861976_101865083_101865363_101868490_101868602_101872013_101872073_101878948
transcript_21213.known	chr12	-	9873	21	FSM	ENSMUSG00000021188.15	ENSMUST00000021605.14	9873	21	0	0	0	0	multi-exon	TRUE	canonical	3	11	junction_20	4.94064773081425	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCTTCGTCCACAATAA	7421	False	NA	NA	False	AATAAA	-17	NA	101879526	101800301	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_101804026_101811038_101811184_101811316_101811434_101811990_101812106_101812854_101812937_101828851_101828952_101838082_101838187_101839581_101839746_101844213_101844408_101845047_101845189_101849514_101852536_101853066_101853280_101855963_101856051_101856836_101856878_101859689_101860053_101860520_101860687_101861909_101861976_101865083_101865363_101868490_101868602_101872013_101872076_101878948
transcript_21215.known	chr12	-	743	2	FSM	ENSMUSG00000021188.15	ENSMUST00000085086.6	743	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACGTTGTTAGGGGAATAG	7533	False	NA	NA	False	ATTAAA	-18	NA	101879414	101878534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_101878812_101878948
transcript_21217.known	chr12	-	5363	11	FSM	ENSMUSG00000021189.12	ENSMUST00000021606.12	5363	11	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_2	46.8375917399689	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTCTCTATTTCTAATTT	NA	False	NA	-5	True	AATAAA	-20	NA	101924505	101885159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_101889464_101892742_101892841_101899226_101899324_101900506_101900674_101903595_101903729_101908375_101908464_101911658_101911726_101912092_101912179_101914262_101914308_101914533_101914699_101924392
transcript_21228.known	chr12	-	879	9	FSM	ENSMUSG00000021189.12	ENSMUST00000159883.2	879	9	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_7	92.3612980365694	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAGTTGCATATTTAATA	NA	False	NA	-25	True	AGTAAA	-15	NA	101924407	101899207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_101899324_101900506_101900674_101903595_101903729_101908375_101908464_101911658_101911726_101912092_101912179_101914262_101914305_101914533_101914699_101924392
transcript_21241.known	chr12	+	5732	15	FSM	ENSMUSG00000041781.10	ENSMUST00000047357.10	5732	15	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_8	15.7246718923623	144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCATGTTTCTTGTGCTT	NA	False	NA	11	True	NA	NA	NA	101942246	101972683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_101942394_101948172_101948355_101949434_101949595_101949678_101949785_101951479_101951610_101953516_101953633_101954891_101955080_101956047_101956339_101963077_101963179_101963513_101963715_101964795_101964949_101965631_101965858_101966935_101967236_101968886_101969022_101969387
transcript_2125.known	chr1	-	2977	13	FSM	ENSMUSG00000026024.15	ENSMUST00000159166.8	2977	13	0	0	0	0	multi-exon	FALSE	canonical	2	94	junction_2	9.94847838728226	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTTGGGCCCCATTAAGC	NA	False	NA	NA	False	NA	NA	NA	59276390	59230767	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_59231211_59233191_59233258_59235349_59235531_59238178_59238351_59242073_59242257_59245677_59245756_59246918_59247016_59248107_59248277_59250289_59250648_59254260_59255181_59257085_59257241_59259533_59259612_59276313
transcript_21250.known	chr12	-	535	3	FSM	ENSMUSG00000113902.2	ENSMUST00000221227.2	535	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	992.5	1504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAATTTAAAGTGTGATT	NA	False	NA	-9	True	AATAAA	-20	NA	101943323	101934360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_101934470_101935751_101935897_101943042
transcript_21251.known	chr12	-	511	3	FSM	ENSMUSG00000113902.2	ENSMUST00000221191.2	511	3	0	0	0	0	multi-exon	FALSE	canonical	3	411	junction_2	787	4324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAATTAGAAGAATTTAAA	NA	False	NA	-17	True	AATAAA	-12	NA	101942186	101934368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_101934470_101935751_101935894_101941918
transcript_21257.known	chr12	-	1990	14	FSM	ENSMUSG00000021190.15	ENSMUST00000021607.9	1990	14	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_3	48.4071734133467	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATTTGTTTCTGGACTCT	7489	False	NA	-17	True	AAAACA	-15	NA	102406072	102360356	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_102360872_102361100_102361169_102361902_102362074_102364441_102364643_102366163_102366254_102366396_102366516_102368143_102368211_102368928_102368992_102369685_102369762_102370518_102370605_102372054_102372137_102379723_102379822_102389843_102390015_102405889
transcript_21262.known	chr12	-	1835	13	FSM	ENSMUSG00000021190.15	ENSMUST00000110020.8	1835	13	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_3	47.188157648103	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCTGGCTTTGTGGTTTG	9960	False	NA	-3	True	AAAACA	-29	NA	102390028	102360342	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_102360872_102361100_102361169_102361902_102362074_102364441_102364643_102366163_102366254_102366396_102366516_102368143_102368211_102368928_102368992_102369685_102369762_102370518_102370605_102372054_102372137_102379723_102379822_102389843
transcript_21263.known	chr12	+	2827	13	FSM	ENSMUSG00000021192.17	ENSMUST00000179218.9	2827	13	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_3	16.7257286836777	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAGAGTGCTTTATATT	NA	False	NA	NA	False	AATAAA	-18	NA	102435393	102464164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_102435623_102438256_102438825_102440804_102441033_102442428_102442649_102443055_102443180_102445856_102446061_102450662_102450834_102453378_102453508_102455677_102455777_102458271_102458498_102460012_102460119_102461958_102462023_102463705
transcript_21265.nic	chr12	+	1017	2	ISM	ENSMUSG00000021192.17	ENSMUST00000179218.9	2827	13	63	25057	6	-24734	5prime_fragment	FALSE	canonical	3	153	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GGAAAAAAAAGAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	102435456	102439107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_102435623_102438256
transcript_21266.known	chr12	+	1883	8	FSM	ENSMUSG00000021194.7	ENSMUST00000021610.7	1883	8	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_1	6.51841974088562	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTTTGATTTATTTTCG	NA	False	NA	24	True	AATAAA	-18	NA	102521227	102531287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_102521430_102522143_102522191_102524724_102524819_102525547_102525617_102527603_102527763_102527925_102528343_102528856_102529333_102530868
transcript_21270.known	chr12	-	2918	10	FSM	ENSMUSG00000057963.10	ENSMUST00000046518.12	2918	10	0	0	0	0	multi-exon	TRUE	canonical	3	205	junction_5	27.4851250454756	507	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTACGTGGTCACAGTC	2407	False	NA	-1	True	AATAAA	-20	NA	102671189	102534840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_102536744_102540180_102540344_102545363_102545432_102550545_102550712_102554154_102554196_102554722_102554822_102572347_102572466_102589558_102589685_102641701_102641727_102670980
transcript_21278.known	chr12	+	3261	11	FSM	ENSMUSG00000041712.8	ENSMUST00000046404.8	3261	11	0	0	0	0	multi-exon	FALSE	canonical	3	541	junction_2	45.0115540722602	494	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTTCTGATTGTTCT	NA	False	NA	33	True	ATTAAA	-14	NA	102724225	102743966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_102724438_102727629_102727764_102728179_102728241_102729716_102729813_102732066_102732121_102732504_102732611_102734328_102734538_102735352_102735503_102736039_102736203_102737477_102737540_102741952
transcript_21291.nnic	chr12	+	738	2	NNC	ENSMUSG00000046675.8	novel	3367	2	NA	NA	-85	-2318	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	0	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGCAGTCTTTAGAAACTT	NA	False	NA	NA	False	AGTAAA	-15	NA	102709935	102711502	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_102710030_102710858
transcript_21292.nnic	chr12	+	898	2	NNC	ENSMUSG00000046675.8	novel	3367	2	NA	NA	-85	-2158	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	0	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTTTGCTTGCTTTAAAA	NA	False	NA	3	True	CATAAA	-18	NA	102709935	102711662	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_102710030_102710858
transcript_21293.known	chr12	+	3367	2	FSM	ENSMUSG00000046675.8	ENSMUST00000057416.8	3367	2	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGCCGTGCCATTGTCAT	NA	False	NA	NA	False	AAAACA	-45	NA	102710020	102713820	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_102710426_102710858
transcript_21296.known	chr12	-	1312	2	FSM	ENSMUSG00000096458.8	ENSMUST00000173760.9	1312	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAGACCCAAGGCTGTCA	NA	False	NA	NA	False	NA	NA	NA	102709904	102708488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_102709654_102709757
transcript_21297.known	chr12	-	2795	2	FSM	ENSMUSG00000041716.8	ENSMUST00000174651.2	2795	2	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	0	340	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGATCTTTGTATACAT	5490	False	NA	-23	True	AATAAA	-16	NA	102724931	102707990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_102709654_102723799
transcript_21298.known	chr12	-	525	2	FSM	ENSMUSG00000091931.6	ENSMUST00000179263.2	525	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCCACTGTTGTTACAT	6359	False	NA	NA	False	NA	NA	NA	102724062	102722539	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_102722802_102723799
transcript_21299.known	chr12	-	1152	2	FSM	ENSMUSG00000091931.6	ENSMUST00000173969.2	1152	2	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_1	0	881	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATTTTCTGTAGCCTCTT	6362	False	NA	-1	True	AATAAA	-20	NA	102724059	102719533	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_102720426_102723799
transcript_21300.known	chr12	-	337	2	FSM	ENSMUSG00000100006.2	ENSMUST00000180187.2	337	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTAAGCAAACTTCTTAG	2197	False	NA	NA	False	TATAAA	-41	NA	102693581	102686235	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_102686454_102693462
transcript_21301.known	chr12	-	859	1	FSM	ENSMUSG00000114184.2	ENSMUST00000222811.2	859	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	232	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGTTTTTATACGAGAAAA	6503	False	NA	NA	False	NA	NA	NA	102833748	102832889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_102832900_102833700
transcript_21302.known	chr12	+	458	2	FSM	ENSMUSG00000043319.6	ENSMUST00000053611.5	458	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGCTTAGTATTGCTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	102865574	102866785	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_102865751_102866503
transcript_21304.known	chr12	-	909	5	FSM	ENSMUSG00000041669.16	ENSMUST00000074416.10	909	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.29903810567666	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTCTGTCTGTCTGTC	NA	False	NA	NA	False	AATGAA	-16	NA	103208409	103163166	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_103163611_103168907_103169038_103201844_103201981_103207598_103207722_103208333
transcript_21305.known	chr12	+	1406	2	FSM	ENSMUSG00000096753.8	ENSMUST00000179363.2	1406	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCACCTCTCGGGTGTCATG	NA	False	NA	NA	False	AATAAA	-17	NA	103281217	103283324	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_103281330_103282030
transcript_21306.known	chr12	-	2690	10	FSM	ENSMUSG00000021200.15	ENSMUST00000021617.14	2690	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	13.984117975602	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGCCCTGTGATTCCTG	4667	False	NA	-2	True	AATAAA	-15	NA	103322260	103287400	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_103287934_103290021_103290176_103291311_103291874_103296603_103296776_103299550_103299797_103301107_103301264_103302068_103302236_103304335_103304441_103311914_103312192_103321942
transcript_21307.nic	chr12	-	761	2	ISM	ENSMUSG00000021200.15	ENSMUST00000127447.2	2399	6	11594	-4	11594	0	3prime_fragment	FALSE	canonical	3	41	junction_1	0	416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGCCCTGTGATTCCTG	NA	False	NA	-2	True	AATAAA	-15	NA	103290249	103287400	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_-_103287934_103290021
transcript_21308.known	chr12	+	2791	6	FSM	ENSMUSG00000021203.16	ENSMUST00000021620.13	2791	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	8.60232526704263	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCAGTCTGGCTTCTTAA	8176	False	NA	NA	False	ATTAAA	-16	NA	103354956	103372604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_103355133_103366454_103366551_103367207_103367327_103369075_103369161_103369492_103369688_103370484
transcript_2131.nnic	chr1	-	1796	11	NIC	ENSMUSG00000038079.15	novel	1823	13	NA	NA	-9	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_10	51.7934358775318	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTATTAACTGAAGGTTT	4331	False	NA	-10	True	AATAAA	-24	NA	59158974	59139748	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59158861
transcript_21312.known	chr12	+	3055	5	FSM	ENSMUSG00000021203.16	ENSMUST00000141055.2	3055	5	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	9.35414346693485	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCAGTCTGGCTTCTTAA	8244	False	NA	NA	False	ATTAAA	-16	NA	103355024	103372604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_103355133_103366454_103366551_103367207_103367327_103369075_103369688_103370484
transcript_21316.known	chr12	-	3063	9	FSM	ENSMUSG00000041645.15	ENSMUST00000110001.4	3063	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	279.990624843047	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCTGAGGGTGTTGCAGT	NA	False	NA	-13	True	ATTAAA	-19	NA	103392039	103374241	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_103374737_103376186_103376317_103377387_103377577_103382454_103382531_103383536_103384053_103384322_103384477_103385220_103385743_103390130_103390857_103391784
transcript_21317.known	chr12	-	2850	9	FSM	ENSMUSG00000041645.15	ENSMUST00000044923.15	2850	9	0	0	0	0	multi-exon	FALSE	canonical	3	750	junction_8	40.7106788815908	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTGAGGGTGTTGCAGTG	NA	False	NA	-12	True	ATTAAA	-20	NA	103392078	103374240	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_103374737_103376186_103376317_103377387_103377577_103382454_103382531_103383536_103384053_103384322_103384477_103385220_103385743_103390130_103390857_103392037
transcript_21318.known	chr12	-	2669	8	FSM	ENSMUSG00000041645.15	ENSMUST00000221211.2	2669	8	0	0	0	0	multi-exon	FALSE	canonical	3	750	junction_7	42.8480942828671	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAGGTTGAGTAAAGGAG	NA	False	NA	NA	False	AATAAA	-14	NA	103392083	103375876	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_103376317_103377387_103377577_103382454_103382531_103383536_103384053_103384322_103384477_103385220_103385743_103390130_103390857_103392037
transcript_2132.nnic	chr1	-	1475	11	NIC	ENSMUSG00000038079.15	novel	1823	13	NA	NA	-9	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_10	51.7934358775318	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAAAAAGCAGGTGATC	4331	False	NA	NA	False	NA	NA	NA	59158974	59140069	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59158861
transcript_21322.known	chr12	-	4274	2	FSM	ENSMUSG00000041645.15	ENSMUST00000220705.2	4274	2	0	0	0	0	multi-exon	FALSE	canonical	3	750	junction_1	0	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAACAAT	NA	False	NA	NA	False	NA	NA	NA	103392089	103386634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_103390857_103392037
transcript_21325.known	chr12	+	977	7	FSM	ENSMUSG00000064215.14	ENSMUST00000085065.12	977	7	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_4	6.23832242407097	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCATTGTTCCCCTTTC	6634	False	NA	5	True	AATAAA	-19	NA	103400517	103406498	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_103400610_103401680_103401833_103402821_103402942_103403648_103403784_103403934_103403965_103405659_103405822_103406212
transcript_21326.nic	chr12	+	957	7	NIC	ENSMUSG00000064215.14	novel	977	7	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	7.40870359029762	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCATTGTTCCCCTTTC	6594	False	NA	5	True	AATAAA	-19	NA	103400477	103406498	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_103400610_103401680_103401833_103402821_103402942_103403708_103403784_103403934_103403965_103405659_103405822_103406212
transcript_21335.known	chr12	+	889	6	FSM	ENSMUSG00000064215.14	ENSMUST00000066701.13	889	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	3.54400902933387	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCATTGTTCCCCTTTC	6587	False	NA	5	True	AATAAA	-19	NA	103400470	103406498	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_103400610_103401680_103401833_103402821_103402942_103403934_103403965_103405659_103405822_103406212
transcript_21339.known	chr12	+	708	4	FSM	ENSMUSG00000064215.14	ENSMUST00000076788.12	708	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	7.58653778449403	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGGTGGAAATAAATTAAAC	6586	False	NA	-27	True	NA	NA	NA	103400469	103406466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_103400610_103401680_103401833_103405659_103405822_103406212
transcript_21340.known	chr12	+	527	3	FSM	ENSMUSG00000064215.14	ENSMUST00000153670.2	527	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	1	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCATTGTTCCCCTTTC	10002	False	NA	5	True	AATAAA	-19	NA	103403885	103406498	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_103403965_103405659_103405822_103406212
transcript_21342.known	chr12	-	463	4	FSM	ENSMUSG00000079017.4	ENSMUST00000055071.9	463	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1.24721912892465	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCTGTGGTGGCTCTTT	6294	False	NA	NA	False	AAAACA	-28	NA	103409939	103408425	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_103408643_103409090_103409253_103409740_103409771_103409885
transcript_21343.known	chr12	-	1762	5	FSM	ENSMUSG00000071178.12	ENSMUST00000186166.7	1762	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.82915619758885	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCTTGACTCTGTGGGTTT	7369	False	NA	NA	False	ATTAAA	-38	NA	103706774	103694414	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_103694693_103695489_103695641_103696508_103696780_103698219_103698852_103706344
transcript_21344.nnic	chr12	+	2037	6	Fusion	ENSMUSG00000066363.13_ENSMUSG00000118588.2	novel	1170	4	NA	NA	-12	616	multi-exon	FALSE	non_canonical	0	0	junction_1	8.30421579681068	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGACAGTGTTCACAGAGC	NA	False	NA	NA	False	AATAAA	-18	NA	104180790	104208198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr12_+_104180880_104183127_104183198_104204054_104204604_104205293_104205568_104206505_104206657_104207294
transcript_21345.nic	chr12	+	1290	5	NIC	ENSMUSG00000041449.17	novel	1226	4	NA	NA	-57	-73	combination_of_known_junctions	FALSE	canonical	3	40	junction_3	10.7325439668328	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTGATGATTATCTCTG	NA	False	NA	NA	False	AATATA	-13	NA	104214106	104219855	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_104214232_104216398_104217017_104217730_104218005_104218943_104219095_104219733
transcript_21346.nic	chr12	+	2101	5	NIC	ENSMUSG00000041449.17	novel	1226	4	NA	NA	-57	738	combination_of_known_junctions	FALSE	canonical	3	40	junction_3	10.7325439668328	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGAGTGTTCACAGAGC	NA	False	NA	12	True	AATAAA	-18	NA	104214106	104220666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_104214232_104216398_104217017_104217730_104218005_104218943_104219095_104219733
transcript_2135.nic	chr1	-	1008	8	ISM	ENSMUSG00000038079.15	ENSMUST00000087475.11	1823	13	-10	7822	-10	-224	5prime_fragment	FALSE	canonical	0	0	junction_6	68.4051555522129	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTGAGTACTTTTCATAA	4330	False	NA	NA	False	ATTAAA	-16	NA	59158975	59147577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59156489_59156501_59157133_59157166_59158861
transcript_21353.nnic	chr12	+	374	3	NIC	ENSMUSG00000041449.17	novel	1239	4	NA	NA	-33	-73	combination_of_known_splicesites	FALSE	canonical	2	6	junction_1	26.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTGATGATTATCTCTG	NA	False	NA	NA	False	AATATA	-13	NA	104214130	104219855	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_104214232_104218943_104219095_104219733
transcript_21354.nnic	chr12	+	1185	3	NIC	ENSMUSG00000041449.17	novel	1239	4	NA	NA	-33	738	combination_of_known_splicesites	FALSE	canonical	2	6	junction_1	26.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGAGTGTTCACAGAGC	NA	False	NA	12	True	AATAAA	-18	NA	104214130	104220666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_104214232_104218943_104219095_104219733
transcript_21355.known	chr12	+	1226	4	FSM	ENSMUSG00000041449.17	ENSMUST00000116393.3	1226	4	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_2	12.3917535302941	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCAGAACTTCTCAAATGG	1867	False	NA	NA	False	NA	NA	NA	104216410	104219928	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_104217017_104217730_104218005_104218943_104219095_104219733
transcript_21362.nnic	chr12	+	1110	6	NNC	ENSMUSG00000079014.5	novel	2200	6	NA	NA	0	-806	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_3	9.30376267969041	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTGATAATTATCTCTGA	NA	False	NA	NA	False	AATATA	-14	NA	104229380	104234825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_104229474_104230560_104230695_104231352_104231688_104232703_104232978_104233914_104234066_104234702
transcript_21368.nnic	chr12	+	1120	5	Fusion	ENSMUSG00000041449.17_ENSMUSG00000079014.5	novel	1239	4	NA	NA	-25	-806	multi-exon	FALSE	canonical	2	3	junction_3	10.4522724801834	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTGATAATTATCTCTGA	NA	False	NA	NA	False	AATATA	-14	NA	104214138	104234825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr12_+_104214232_104230560_104230695_104231352_104231972_104233914_104234066_104234702
transcript_21372.nnic	chr12	+	1176	5	NIC	ENSMUSG00000079014.5	novel	2200	6	NA	NA	-56	-806	combination_of_known_splicesites	FALSE	canonical	2	3	junction_3	10.6624340560681	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTGATAATTATCTCTGA	NA	False	NA	NA	False	AATATA	-14	NA	104229324	104234825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_104229474_104230560_104230695_104231352_104231972_104233914_104234066_104234702
transcript_21381.known	chr12	+	701	2	FSM	ENSMUSG00000079014.5	ENSMUST00000109960.3	701	2	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGCGAGAGGAACTTGGT	NA	False	NA	NA	False	TTTAAA	-26	NA	104229415	104231995	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_104229474_104231352
transcript_21385.nnic	chr12	+	1870	5	NNC	ENSMUSG00000079012.12	novel	1658	5	NA	NA	-9763	0	at_least_one_novel_splicesite	FALSE	canonical	3	63	junction_2	12.328828005938	98	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCTGCTCTCAGCTTGCA	591	False	NA	17	True	AATACA	-26	NA	104343659	104360515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_104343932_104355322_104355972_104357714_104357989_104358900_104359052_104359991
transcript_21394.known	chr12	-	1268	3	FSM	ENSMUSG00000021095.6	ENSMUST00000021513.6	1268	3	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	3	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTATTTCCTACCCTCGTG	NA	False	NA	-11	True	AATAAA	-26	NA	104439589	104437467	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_104437906_104438251_104438512_104439019
transcript_21396.known	chr12	+	757	4	FSM	ENSMUSG00000112954.2	ENSMUST00000222329.2	757	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.24721912892465	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAAAGCCTGACTCCTGAA	NA	False	NA	NA	False	AGTAAA	-12	NA	104486226	104492236	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_104486510_104488300_104488416_104489405_104489469_104491940
transcript_21398.known	chr12	-	1460	9	FSM	ENSMUSG00000041415.12	ENSMUST00000222002.3	1460	9	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_7	17.5552698640608	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAATTGAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	104705096	104688342	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_104688703_104690160_104690330_104694591_104694753_104695386_104695522_104696391_104696523_104697278_104697442_104698058_104698247_104704027_104704126_104705041
transcript_21400.known	chr12	-	11866	13	FSM	ENSMUSG00000021097.16	ENSMUST00000109936.3	11866	13	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_6	8.27143679578504	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCTCTTTGCTAACTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	104831335	104729375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_104738223_104740031_104740103_104740747_104740809_104743203_104743401_104746980_104748661_104750165_104750249_104751651_104751846_104756240_104756432_104758097_104758191_104763300_104763385_104766735_104766832_104770867_104770930_104831128
transcript_21401.known	chr12	-	527	2	FSM	ENSMUSG00000113722.2	ENSMUST00000222812.2	527	2	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	0	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTGTCTCGTCTACTC	8338	False	NA	NA	False	NA	NA	NA	104998536	104996875	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_104997085_104998218
transcript_21402.known	chr12	-	381	2	FSM	ENSMUSG00000113722.2	ENSMUST00000222672.2	381	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAATAAATGCTGGCAGT	8336	False	NA	NA	False	NA	NA	NA	104998538	104996908	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_104997085_104998333
transcript_21403.nnic	chr12	+	887	3	NNC	ENSMUSG00000021102.5	novel	2925	2	NA	NA	-57	117	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	325.5	177	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGTGTGTGAGTCATTAAA	6301	False	NA	14	True	ATTAAA	-14	NA	104998889	105007115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_104999023_104999069_104999242_105006533
transcript_21419.known	chr12	-	535	3	FSM	ENSMUSG00000041359.15	ENSMUST00000175652.2	535	3	0	0	0	0	multi-exon	FALSE	canonical	3	551	junction_2	399	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGGGCTCCAGAGAAGAT	NA	False	NA	NA	False	NA	NA	NA	105189052	105183756	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_105183961_105184481_105184552_105188791
transcript_21425.known	chr12	-	1398	4	FSM	ENSMUSG00000041359.15	ENSMUST00000041316.15	1398	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	814.330945555238	3434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGCTCTTGGAATTATG	NA	False	NA	-2	True	AATAAA	-23	NA	105188996	105183008	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_105183961_105184481_105184552_105184917_105185089_105188791
transcript_21426.known	chr12	-	1299	3	FSM	ENSMUSG00000041359.15	ENSMUST00000101071.4	1299	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	973.5	1261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAATTTCTCGTGCTCTTG	NA	False	NA	-10	True	AATAAA	-15	NA	105188975	105183016	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_105183961_105184917_105185089_105188791
transcript_21429.known	chr12	+	3282	3	FSM	ENSMUSG00000097929.10	ENSMUST00000180458.9	3282	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	9	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATTTTATCTAATTTATT	NA	False	NA	NA	False	AATAAA	-18	NA	105302852	105350191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_105303217_105303488_105303819_105347603
transcript_2143.nic	chr1	+	1679	9	NIC	ENSMUSG00000047361.17	novel	933	5	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	3.23795846174715	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTTTGTTTTCTTTAGGA	NA	False	NA	NA	False	AATAAA	-18	NA	59658543	59675576	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_59658605_59664245_59664337_59666615_59666767_59667328_59667444_59669153_59669486_59671372_59671576_59672305_59672479_59673152_59673373_59675243
transcript_21430.nnic	chr12	+	1464	3	NNC	ENSMUSG00000097929.10	novel	3282	3	NA	NA	30	-1822	intron_retention	FALSE	canonical	3	11	junction_1	10.5	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAATATTTGGAGAAGCAC	NA	False	NA	30	True	AATAAA	-24	NA	105302882	105348367	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_105303253_105303488_105303819_105347603
transcript_21431.known	chr12	+	5786	2	FSM	ENSMUSG00000094910.2	ENSMUST00000178224.2	5786	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCCCACACACTT	NA	False	NA	8	True	ATTAAA	-22	NA	105420114	105459354	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_105420410_105453863
transcript_21440.known	chr12	+	2720	3	FSM	ENSMUSG00000044715.8	ENSMUST00000051934.7	2720	3	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_2	9.5	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGAGCATAAAGCAGTCAT	NA	False	NA	NA	False	AATAAA	-20	NA	105651642	105669282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_105651718_105664976_105665236_105666896
transcript_21442.known	chr12	+	1064	2	FSM	ENSMUSG00000044715.8	ENSMUST00000222284.2	1064	2	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_1	0	535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTTGAGGGTGTAAATA	NA	False	NA	NA	False	AATAAA	-15	NA	105651087	105665410	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_105651718_105664976
transcript_21443.known	chr12	+	917	2	FSM	ENSMUSG00000044715.8	ENSMUST00000222841.2	917	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGGCTTGTTTTCAGCAC	NA	False	NA	NA	False	AATAAA	-15	NA	105651659	105656479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_105651718_105655620
transcript_21446.nic	chr12	+	1831	7	ISM	ENSMUSG00000041323.7	ENSMUST00000040876.7	3099	18	41062	0	1763	0	3prime_fragment	FALSE	canonical	2	4	junction_1	15.3920975395385	106	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGGTTTCTTTTATTGG	7164	False	NA	NA	False	AATAAA	-40	NA	105713296	105748706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_105713575_105727726_105727856_105730211_105730281_105732812_105733011_105734788_105735010_105747108_105747268_105747929
transcript_2145.known	chr1	+	348	4	FSM	ENSMUSG00000047361.17	ENSMUST00000191051.2	348	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	3.29983164553722	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGGAAGAAAGGGGCCTGG	NA	False	NA	NA	False	AAGAAA	-39	NA	59658572	59667402	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_59658605_59664245_59664337_59666615_59666767_59667328
transcript_21453.nnic	chr12	+	1775	5	NIC	ENSMUSG00000041323.7	novel	3099	18	NA	NA	15902	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_1	14.2653426176871	122	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGGTTTCTTTTATTGG	NA	False	NA	NA	False	AATAAA	-40	NA	105727435	105748706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_105727856_105732812_105733011_105734788_105735010_105747108_105747268_105747929
transcript_21469.known	chr12	+	741	7	FSM	ENSMUSG00000021111.16	ENSMUST00000170540.8	741	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	661.770709704065	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATTTTCTAAATGGTATG	NA	False	NA	-45	True	CATAAA	-9	NA	105751004	105775906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_105751174_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782
transcript_21470.known	chr12	+	1033	9	FSM	ENSMUSG00000021111.16	ENSMUST00000166735.8	1033	9	0	0	0	0	multi-exon	FALSE	canonical	3	1577	junction_3	94.8235202890085	3689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAGTCTTATTTCTGTGA	NA	False	NA	17	True	AATAAA	-20	NA	105751015	105775968	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782
transcript_21471.known	chr12	+	4380	22	FSM	ENSMUSG00000021111.16	ENSMUST00000109901.9	4380	22	0	0	0	0	multi-exon	FALSE	canonical	3	846	junction_12	378.82265398812	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTAAGTAGTGTCTCAT	NA	False	NA	NA	False	NA	NA	NA	105750952	105805066	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315_105795537_105799358_105799422_105800968_105801044_105803023
transcript_21472.known	chr12	+	2076	12	FSM	ENSMUSG00000021111.16	ENSMUST00000166498.8	2076	12	0	0	0	0	multi-exon	FALSE	canonical	3	944	junction_9	335.398664968735	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGCTGTCTCTGTGTTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	105750991	105780328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456
transcript_21473.known	chr12	+	1170	9	FSM	ENSMUSG00000021111.16	ENSMUST00000163805.2	1170	9	0	0	0	0	multi-exon	FALSE	canonical	3	944	junction_8	273.366512213914	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTGTATATTTTTTTATT	4491	False	NA	NA	False	AATAAA	-14	NA	105765943	105777671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295
transcript_21474.known	chr12	+	295	2	FSM	ENSMUSG00000021111.16	ENSMUST00000170831.2	295	2	0	0	0	0	multi-exon	FALSE	canonical	3	1768	junction_1	0	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAGTCTTATTTCTGTGA	NA	False	NA	17	True	AATAAA	-20	NA	105775582	105775968	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_105775692_105775782
transcript_21475.known	chr12	+	4356	21	FSM	ENSMUSG00000021111.16	ENSMUST00000169938.8	4356	21	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_6	426.918657357581	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCATAGTTGGCTGGTTTC	NA	False	NA	12	True	AATAAA	-18	NA	105751001	105805203	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315_105795537_105799358_105799422_105800968_105801044_105803023
transcript_21476.known	chr12	+	2436	21	FSM	ENSMUSG00000021111.16	ENSMUST00000168186.8	2436	21	0	0	0	0	multi-exon	FALSE	canonical	3	846	junction_12	380.482125072913	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTAGTTAAAGTCTGTAA	NA	False	NA	NA	False	ATTAAA	-13	NA	105750962	105801152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315_105795537_105799358_105799422_105800968
transcript_21477.known	chr12	+	2076	2	FSM	ENSMUSG00000113835.2	ENSMUST00000220934.2	2076	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTTCTGTCCTTAGTC	3351	False	NA	NA	False	AATAAA	-16	NA	105866099	105868409	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_105866201_105866434
transcript_21508.known	chr12	+	3711	14	FSM	ENSMUSG00000021115.16	ENSMUST00000085026.12	3711	14	0	0	0	0	multi-exon	FALSE	canonical	3	514	junction_12	169.729126349489	961	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTGTTTATTTGTTTG	NA	False	NA	17	True	NA	NA	NA	105976550	106043685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106039877_106039938_106041265
transcript_21509.known	chr12	+	1509	13	FSM	ENSMUSG00000021115.16	ENSMUST00000072040.7	1509	13	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_12	159.966901958568	1808	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGAATCTTTAGTCGTCA	NA	False	NA	NA	False	ATTAAA	-42	NA	105976486	106041479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106041265
transcript_21510.known	chr12	+	1742	15	FSM	ENSMUSG00000021115.16	ENSMUST00000021539.16	1742	15	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_12	308.222032678671	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAAGCGTTTATTGAATG	NA	False	NA	23	True	AATAAA	-29	NA	105976574	106041668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106037828_106037901_106039877_106039938_106041265
transcript_21511.known	chr12	+	2520	14	FSM	ENSMUSG00000021115.16	ENSMUST00000221312.2	2520	14	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_12	248.778292970376	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAGGGTAATTTATAAAA	NA	False	NA	NA	False	ATTAAA	-22	NA	105976541	106041459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106037901_106039877_106039938_106041265
transcript_21514.known	chr12	-	2755	13	FSM	ENSMUSG00000056770.16	ENSMUST00000071095.14	2755	13	0	0	0	0	multi-exon	FALSE	canonical	3	469	junction_9	51.1017503505397	312	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGTTTGTTCCTTGTC	NA	False	NA	0	True	ATTAAA	-19	NA	108145573	108072689	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_108073938_108074815_108074977_108077480_108077567_108078388_108078556_108079577_108079653_108084500_108084616_108085364_108085424_108124012_108124270_108124534_108124608_108126491_108126641_108129231_108129325_108131321_108131432_108145411
transcript_21523.known	chr12	+	2789	12	FSM	ENSMUSG00000021258.11	ENSMUST00000221167.2	2789	12	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_11	12.5217166726353	153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTTTATGTGTGAGTACAG	NA	False	NA	24	True	AATAAA	-17	NA	108145837	108169616	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_108146140_108148435_108148468_108152634_108152882_108153437_108153520_108155323_108155456_108159930_108160037_108160600_108160659_108161325_108161496_108161841_108162111_108162597_108162632_108165567_108165643_108168334
transcript_21524.known	chr12	+	2118	15	FSM	ENSMUSG00000021259.6	ENSMUST00000021684.6	2118	15	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.28769688409428	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATGTACGGCCACCCAGG	NA	False	NA	NA	False	NA	NA	NA	108300639	108328493	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_108300824_108308581_108308663_108309272_108309355_108311832_108311907_108312347_108312435_108317440_108317580_108318172_108318284_108319032_108319184_108319348_108319412_108321682_108321756_108323745_108323831_108324289_108324401_108326739_108326829_108327454_108327522_108327772
transcript_21525.nic	chr12	+	2016	14	NIC	ENSMUSG00000021262.16	novel	1870	13	NA	NA	-80	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	46.7253083228974	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGGCTCTGGCTCACTCT	NA	False	NA	17	True	AATAAA	-17	NA	108571944	108654775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_108572271_108614573_108614743_108619180_108619359_108639547_108639612_108640665_108640725_108641655_108641886_108642360_108642483_108646087_108646149_108647749_108647814_108649453_108649521_108649606_108649670_108652308_108652376_108652666_108652725_108654287
transcript_21527.known	chr12	-	1287	3	FSM	ENSMUSG00000021263.12	ENSMUST00000021691.6	1287	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTGTTTTCCTTCTTTTG	NA	False	NA	NA	False	ATTAAA	-21	NA	108668570	108656480	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_108656870_108658152_108658896_108668415
transcript_21528.known	chr12	+	6178	5	FSM	ENSMUSG00000021264.13	ENSMUST00000021692.9	6178	5	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	10.779030568655	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGTGTTCTTGTTTGTT	NA	False	NA	25	True	AATAAA	-25	NA	108758898	108786074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_108760018_108772404_108772568_108778844_108778906_108780531_108780691_108781398
transcript_21530.known	chr12	-	1976	4	FSM	ENSMUSG00000021265.4	ENSMUST00000021693.4	1976	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	5.09901951359278	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAAGCTCCTCTGTGCGT	NA	False	NA	NA	False	AATAAA	-18	NA	108801809	108791798	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_108793415_108793599_108793684_108797122_108797167_108801577
transcript_21537.nic	chr12	+	1955	7	NIC	ENSMUSG00000040877.17	novel	2657	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	5	junction_2	24.7638849940796	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGCCGTGGTCATGGTG	4850	False	NA	NA	False	NA	NA	NA	108860197	108994378	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_108860257_108863834_108863933_108946616_108946765_108958732_108958864_108990888_108991060_108992335_108992477_108993171
transcript_21538.known	chr12	+	2657	7	FSM	ENSMUSG00000040877.17	ENSMUST00000167816.8	2657	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	23.6713610367747	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGCCGTGGTCATGGTG	4850	False	NA	NA	False	NA	NA	NA	108860197	108994378	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_108860240_108863834_108864652_108946616_108946765_108958732_108958864_108990888_108991060_108992335_108992477_108993171
transcript_21549.nnic	chr12	+	2395	5	NIC	ENSMUSG00000040877.17	novel	2657	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	31.4245127249413	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGCCGTGGTCATGGTG	4850	False	NA	NA	False	NA	NA	NA	108860197	108994378	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_108860257_108863834_108864652_108990888_108991060_108992335_108992477_108993171
transcript_21552.nnic	chr12	+	1631	4	NNC	ENSMUSG00000040877.17	novel	2657	7	NA	NA	-17666	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	31.6262900483478	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGCCGTGGTCATGGTG	NA	False	NA	NA	False	NA	NA	NA	108969061	108994378	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_108969174_108990888_108991060_108992335_108992477_108993171
transcript_21554.nnic	chr12	+	1645	4	NNC	ENSMUSG00000040877.17	novel	2657	7	NA	NA	-5251	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	31.6262900483478	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGCCGTGGTCATGGTG	NA	False	NA	NA	False	NA	NA	NA	108981476	108994378	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_108981603_108990888_108991060_108992335_108992477_108993171
transcript_21555.known	chr12	+	4356	8	FSM	ENSMUSG00000040877.17	ENSMUST00000047115.9	4356	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	24.6791657980937	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGCCGTGGTCATGGTG	4895	False	NA	NA	False	NA	NA	NA	108860242	108994378	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_108861816_108862817_108862986_108863834_108864652_108946616_108946765_108958732_108958864_108990888_108991060_108992335_108992477_108993171
transcript_21557.known	chr12	-	1824	11	FSM	ENSMUSG00000021266.17	ENSMUST00000161154.2	1824	11	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_10	739.608714118486	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCACTGTCTGACCA	NA	False	NA	-35	True	AATAAA	-15	NA	108859123	108825959	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_108826260_108827194_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859085
transcript_21558.nic	chr12	-	1903	11	NIC	ENSMUSG00000021266.17	novel	1824	11	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	246	junction_1	519.514003661114	495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCACTGTCTGACCA	NA	False	NA	-35	True	AATAAA	-15	NA	108860111	108825959	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_-_108826260_108827194_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
transcript_21562.known	chr12	-	2764	10	FSM	ENSMUSG00000021266.17	ENSMUST00000161410.8	2764	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	620.186073232944	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCACTGTCTGACCAAGCA	NA	False	NA	-31	True	AATAAA	-19	NA	108859124	108825955	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859085
transcript_21563.known	chr12	-	2831	10	FSM	ENSMUSG00000021266.17	ENSMUST00000109848.10	2831	10	0	0	0	0	multi-exon	FALSE	canonical	3	1835	junction_9	109.614475929657	991	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCACTGTCTGACCAAGCA	NA	False	NA	-31	True	AATAAA	-19	NA	108860100	108825955	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
transcript_21576.known	chr12	+	1703	5	FSM	ENSMUSG00000040856.18	ENSMUST00000109844.11	1703	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	4.02336923485777	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGGTAACAGAACCAGGAC	NA	False	NA	NA	False	TATAAA	-24	NA	109419380	109426626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_109419653_109420910_109420975_109421418_109421550_109423999_109424142_109425532
transcript_21581.known	chr12	+	1896	10	FSM	ENSMUSG00000021268.18	ENSMUST00000143836.8	1896	10	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_3	140.228473183437	1017	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAAGCAGTGATGGGTGTG	NA	False	NA	NA	False	NA	NA	NA	109506887	109538155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_109506983_109509582_109509733_109509909_109510626_109510830_109510925_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
transcript_2159.known	chr1	-	1215	5	FSM	ENSMUSG00000026021.16	ENSMUST00000091374.9	1215	5	0	0	0	0	multi-exon	FALSE	canonical	3	3231	junction_1	432.6531520745	11382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGCTCCTTTTATTTTA	589	False	NA	0	True	AATAAA	-21	NA	59709993	59678592	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_59679428_59681576_59681649_59683675_59683754_59694616_59694692_59709838
transcript_21590.nic	chr12	+	1768	9	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	187	junction_2	97.0602261485105	1043	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCAGTGATGGGTGTGC	NA	False	NA	NA	False	NA	NA	NA	109506878	109538156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_109506983_109509582_109509689_109509909_109510626_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
transcript_21597.nic	chr12	+	1812	9	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	241	junction_3	82.0182906430023	1075	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCAGTGATGGGTGTGC	NA	False	NA	NA	False	NA	NA	NA	109506878	109538156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_109506983_109509582_109509733_109509909_109510626_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
transcript_2160.known	chr1	-	528	4	FSM	ENSMUSG00000026021.16	ENSMUST00000191158.7	528	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1637.18790070725	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATCATGATTGACTTATGG	631	False	NA	NA	False	AAAACA	-23	NA	59709951	59625716	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_59625854_59658565_59658769_59694616_59694692_59709838
transcript_21600.nic	chr12	+	1687	8	NIC	ENSMUSG00000021268.18	novel	1988	9	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	88	junction_4	137.349249457471	1034	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCAGTGATGGGTGTGC	NA	False	NA	NA	False	NA	NA	NA	109506878	109538156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_109506983_109509582_109509689_109509909_109510626_109512312_109512426_109515913_109515988_109516087_109516246_109524670_109524755_109537824
transcript_21604.nic	chr12	+	1731	8	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	88	junction_4	128.442792792777	1043	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCAGTGATGGGTGTGC	NA	False	NA	NA	False	NA	NA	NA	109506878	109538156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_109506983_109509582_109509733_109509909_109510626_109512312_109512426_109515913_109515988_109516087_109516246_109524670_109524755_109537824
transcript_2161.known	chr1	-	829	3	FSM	ENSMUSG00000026021.16	ENSMUST00000123857.2	829	3	0	0	0	0	multi-exon	FALSE	canonical	3	3473	junction_2	443	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCCAAGTATTCTTTAT	589	False	NA	NA	False	NA	NA	NA	59709993	59683154	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_59683754_59694616_59694692_59709838
transcript_21618.known	chr12	+	1498	3	FSM	ENSMUSG00000021268.18	ENSMUST00000129245.8	1498	3	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_2	159.5	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	109506883	109511202	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_109506983_109509582_109509689_109509909
transcript_21619.nic	chr12	+	1558	3	ISM	ENSMUSG00000021268.18	ENSMUST00000143836.8	1896	10	-9	26942	-5	11	intron_retention	FALSE	canonical	3	281	junction_2	112.5	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGGAGAAATAAA	NA	False	NA	NA	False	NA	NA	NA	109506878	109511213	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_109506983_109509582_109509733_109509909
transcript_21620.known	chr12	+	14548	5	FSM	ENSMUSG00000021268.18	ENSMUST00000146701.8	14548	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	174.00915924169	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGATGGGTGTGCTACT	NA	False	NA	NA	False	ACTAAA	-1	NA	109511280	109538160	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_109512426_109515913_109515988_109516087_109516246_109524670_109524755_109525073
transcript_21621.known	chr12	+	1957	12	FSM	ENSMUSG00000097451.12	ENSMUST00000238763.2	1957	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	243.578249514122	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTTGTGTTTGAGTGTC	2865	False	NA	NA	False	NA	NA	NA	109612563	109627717	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_109613186_109615587_109615677_109616505_109616592_109617446_109617534_109618292_109618373_109619134_109619150_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
transcript_21623.known	chr12	+	2352	8	FSM	ENSMUSG00000097451.12	ENSMUST00000238384.2	2352	8	0	0	0	0	multi-exon	FALSE	canonical	3	549	junction_5	36.3862499259469	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTGAAGTACAATTATTGA	901	False	NA	NA	False	ACTAAA	-5	NA	109616672	109628150	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
transcript_21626.known	chr12	+	694	2	FSM	ENSMUSG00000097391.9	ENSMUST00000182300.2	694	2	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	0	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCTTGCGTGTCTGTATT	4789	False	NA	21	True	AATAAA	-21	NA	109714397	109715892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_109714728_109715528
transcript_21627.known	chr12	-	642	1	FSM	ENSMUSG00000113625.2	ENSMUST00000222259.2	642	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	354	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGGCTTCAATAGTTCTC	NA	False	NA	NA	False	AATATA	-45	NA	109861527	109860885	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_109860900_109861500
transcript_21628.known	chr12	+	1528	2	FSM	ENSMUSG00000112940.2	ENSMUST00000223541.2	1528	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGGTTTGGATATTTGG	NA	False	NA	NA	False	AATATA	-14	NA	109878218	109879952	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_109878372_109878577
transcript_21630.known	chr12	+	2030	1	FSM	ENSMUSG00000075707.7	ENSMUST00000173014.3	2030	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	247	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTTGGTCCGTTTATTT	NA	False	NA	27	True	AATAAA	-24	NA	110245501	110247531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_110245500_110247500
transcript_21631.known	chr12	+	375	1	FSM	ENSMUSG00000113198.2	ENSMUST00000222676.2	375	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACAGGTTCAATCAGCTG	3194	False	NA	-36	True	NA	NA	NA	110282423	110282798	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_110282400_110282800
transcript_21645.known	chr12	+	2367	12	FSM	ENSMUSG00000017843.15	ENSMUST00000221715.2	2367	12	0	0	0	0	multi-exon	TRUE	canonical	3	738	junction_1	90.3704039902189	543	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCAGTGTGTATTTTCCTA	4920	False	NA	14	True	AATAAA	-16	NA	110452171	110538122	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129
transcript_21663.known	chr12	-	300	2	FSM	ENSMUSG00000113585.2	ENSMUST00000222863.2	300	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTCCCCGCCCCCACTGC	NA	False	NA	NA	False	NA	NA	NA	110452050	110450403	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_110450642_110451988
transcript_21666.known	chr12	+	2189	1	FSM	ENSMUSG00000113361.2	ENSMUST00000221143.2	2189	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTGAGTAGTTTTGTTC	NA	False	NA	NA	False	NA	NA	NA	110556945	110559134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_110556900_110559100
transcript_21667.known	chr12	+	14342	77	FSM	ENSMUSG00000018707.14	ENSMUST00000018851.14	14342	77	0	0	0	0	multi-exon	TRUE	canonical	3	133	junction_1	148.379081411613	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTCTGCTGTGGGAATCC	6471	False	NA	39	True	AATAAA	-40	NA	110567885	110633379	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_110568289_110578778_110578867_110580478_110580653_110580786_110581043_110581324_110581512_110582773_110583046_110583131_110583360_110584053_110585131_110585622_110585803_110586732_110586883_110587960_110588108_110590942_110591084_110591860_110592038_110592164_110592276_110592355_110592476_110593292_110593533_110594373_110594530_110594666_110594781_110595157_110595269_110595341_110595552_110595710_110595858_110596010_110596178_110596256_110596431_110596931_110597098_110597177_110597367_110598042_110598238_110599073_110599357_110599586_110599688_110600652_110600813_110601934_110602179_110602328_110602513_110602759_110602973_110603539_110603779_110603929_110604087_110605172_110605401_110606167_110606399_110606579_110606721_110606932_110607167_110607252_110607460_110607535_110607658_110608444_110608611_110609556_110609721_110612627_110612758_110614694_110614829_110615433_110615549_110615648_110615811_110615895_110616111_110616207_110616413_110617924_110618099_110618184_110618305_110618507_110618629_110620583_110620780_110621217_110621336_110621849_110622066_110622718_110622932_110623026_110623155_110623476_110623631_110624275_110624423_110624510_110624662_110624774_110625029_110625106_110625242_110625332_110625428_110625523_110625699_110625874_110625951_110627257_110627419_110627587_110627700_110627788_110627974_110628166_110628281_110628951_110629123_110629275_110629494_110629606_110629711_110630969_110631182_110631516_110631671_110632097_110632241_110632391_110632561_110632727_110632856_110632996
transcript_21669.nic	chr12	+	986	4	ISM	ENSMUSG00000018707.14	ENSMUST00000018851.14	14342	77	64049	0	2312	0	3prime_fragment	FALSE	canonical	3	646	junction_2	25.2498624858742	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTCTGCTGTGGGAATCC	3153	False	NA	39	True	AATAAA	-40	NA	110631934	110633379	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr12_+_110632241_110632391_110632561_110632727_110632856_110632996
transcript_21680.known	chr12	-	2852	11	FSM	ENSMUSG00000021270.14	ENSMUST00000021698.13	2852	11	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_10	4154.7402337571	5816	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGAATGTGTCTTTTCT	NA	False	NA	-5	True	GATAAA	-21	NA	110662723	110657461	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662215_110662685
transcript_21698.known	chr12	-	3281	11	FSM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	0	0	0	0	multi-exon	FALSE	canonical	3	11114	junction_7	1521.95811046165	27416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAGATTGGGTTGTA	NA	False	NA	NA	False	NA	NA	NA	110662829	110657038	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
transcript_21699.known	chr12	-	325	2	FSM	ENSMUSG00000021270.14	ENSMUST00000129005.2	325	2	0	0	0	0	multi-exon	FALSE	canonical	3	14594	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTCCAGAAGATGAAGAGGA	NA	False	NA	NA	False	NA	NA	NA	110659614	110659142	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_110659307_110659453
transcript_21705.known	chr12	+	2384	3	FSM	ENSMUSG00000037957.15	ENSMUST00000095410.8	2384	3	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_2	4	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTTTGTAGAACTCTGAT	5346	False	NA	19	True	AATAAA	-18	NA	110704425	110761462	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_110704712_110745729_110745913_110759547
transcript_21708.known	chr12	+	1351	3	FSM	ENSMUSG00000037957.15	ENSMUST00000193053.6	1351	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	64	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATTTGTTTATCCTTTTT	5298	False	NA	NA	False	ATTAAA	-15	NA	110704377	110770672	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_110704712_110745729_110745913_110769838
transcript_21718.known	chr12	-	1693	12	FSM	ENSMUSG00000056458.17	ENSMUST00000070565.15	1693	12	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_11	66.0974737267458	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7660	False	NA	-3	True	AATATA	-18	NA	110807373	110774231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110807179
transcript_21719.nnic	chr12	-	1615	12	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_11	79.2169319908919	60	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7661	False	NA	-3	True	AATATA	-18	NA	110807372	110774231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110807256
transcript_21726.nic	chr12	-	1555	11	NIC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	3	80	junction_10	69.6330381356436	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7624	False	NA	-3	True	AATATA	-18	NA	110807409	110774231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110807179
transcript_21727.nnic	chr12	-	1514	11	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	-72	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_10	83.4007793728572	64	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7588	False	NA	-3	True	AATATA	-18	NA	110807445	110774231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110807256
transcript_21738.nnic	chr12	-	1312	9	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	97.9903534793094	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7651	False	NA	-3	True	AATATA	-18	NA	110807382	110774231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777176_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110807256
transcript_21739.nic	chr12	-	1468	9	NIC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	-51	0	combination_of_known_junctions	FALSE	canonical	3	54	junction_8	74.9615526453395	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7609	False	NA	-3	True	AATATA	-18	NA	110807424	110774231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110807179
transcript_2174.known	chr1	+	1713	13	FSM	ENSMUSG00000026020.10	ENSMUST00000027174.10	1713	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_12	536.31660425536	299	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	AATAAA	-21	NA	59724135	59750669	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59750429
transcript_21742.nnic	chr12	-	1284	9	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_8	98.3062021186863	57	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7657	False	NA	-3	True	AATATA	-18	NA	110807376	110774231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110800559_110800675_110807256
transcript_21749.nic	chr12	-	1294	8	NIC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	-51	0	combination_of_known_junctions	FALSE	canonical	3	54	junction_7	79.9971938283348	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7609	False	NA	-3	True	AATATA	-18	NA	110807424	110774231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110807179
transcript_21750.nnic	chr12	-	1175	8	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	94.5211346628847	67	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7651	False	NA	-3	True	AATATA	-18	NA	110807382	110774231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110807256
transcript_2176.known	chr1	-	3650	11	FSM	ENSMUSG00000026018.13	ENSMUST00000027172.13	3650	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.7	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTTCTCTAAAGTGTTCA	NA	False	NA	NA	False	AATAAA	-23	NA	60082246	60028226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_60030399_60036609_60036871_60042814_60042865_60045392_60045479_60046966_60047066_60049267_60049394_60052978_60053178_60054870_60054995_60061736_60061810_60067226_60067396_60081955
transcript_21766.known	chr12	+	3723	8	FSM	ENSMUSG00000021271.6	ENSMUST00000170060.4	3723	8	0	0	0	0	multi-exon	TRUE	canonical	3	8	junction_3	20.4500386706884	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGCTTTCTTGATGTGT	NA	False	NA	13	True	AGTAAA	-16	NA	110816712	110836430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_110816998_110821433_110822307_110827229_110827458_110830397_110830491_110831289_110831440_110832673_110832803_110833141_110833260_110834583
transcript_21776.known	chr12	-	1579	6	FSM	ENSMUSG00000021276.11	ENSMUST00000220607.2	1579	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	194.982460749679	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACATATTAATCCTGTTG	3397	False	NA	-10	True	NA	NA	NA	110855531	110839595	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_110840564_110843274_110843405_110843656_110843807_110846118_110846249_110850323_110850493_110855499
transcript_21785.known	chr12	-	2029	5	FSM	ENSMUSG00000021276.11	ENSMUST00000043716.9	2029	5	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_1	85.0951673128386	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTTCCTGTCTCAGCCT	3349	False	NA	NA	False	TATAAA	-29	NA	110855579	110839043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_110840564_110843274_110843405_110846118_110846249_110850323_110850493_110855499
transcript_2179.known	chr1	-	951	4	FSM	ENSMUSG00000026018.13	ENSMUST00000186970.2	951	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	1.4142135623731	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCATGCATTGGAGTTAA	NA	False	NA	NA	False	AATAAA	-12	NA	60082343	60059949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_60060544_60061736_60061810_60067226_60067396_60082228
transcript_21791.known	chr12	-	723	5	FSM	ENSMUSG00000021276.11	ENSMUST00000222457.2	723	5	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	152.938508885107	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACTTTGTAGGAGGTTA	3378	False	NA	-19	True	AATAAA	-8	NA	110855550	110841467	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_110841711_110843274_110843405_110846118_110846249_110850323_110850493_110855499
transcript_21794.nnic	chr12	-	1192	5	NNC	ENSMUSG00000021276.11	novel	744	5	NA	NA	-360	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	213.008802635008	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTAGTTATTTCTGTCTT	2989	False	NA	0	True	AATAAA	-21	NA	110855939	110844025	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_110844427_110845421_110845474_110846118_110846249_110850323_110850493_110855499
transcript_21797.nnic	chr12	-	1305	5	NNC	ENSMUSG00000021276.11	novel	744	5	NA	NA	-60	3	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	211.668815605889	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTAGTTATTTCTGTCTT	3289	False	NA	0	True	AATAAA	-21	NA	110855639	110844025	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_110844549_110845130_110845474_110846118_110846249_110850323_110850493_110855499
transcript_21798.known	chr12	-	744	5	FSM	ENSMUSG00000021276.11	ENSMUST00000221901.2	744	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	213.008802635008	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCCTAGTTATTTCTGT	3361	False	NA	-3	True	AATAAA	-18	NA	110855567	110844028	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_110844354_110845421_110845474_110846118_110846249_110850323_110850493_110855499
transcript_21799.known	chr12	-	536	4	FSM	ENSMUSG00000021276.11	ENSMUST00000221102.2	536	4	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	203.882318997995	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGTCACCGGGCCCTGTGA	3375	False	NA	NA	False	NA	NA	NA	110855553	110840380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_110840564_110846118_110846249_110850323_110850493_110855499
transcript_21802.nnic	chr12	-	1947	4	NNC	ENSMUSG00000021276.11	novel	445	4	NA	NA	-57	3	intron_retention	FALSE	canonical	3	5	junction_1	206.236649399556	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTAGTTATTTCTGTCTT	3292	False	NA	0	True	AATAAA	-21	NA	110855636	110844025	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_110844549_110845130_110846249_110850323_110850493_110855499
transcript_21803.known	chr12	-	702	4	FSM	ENSMUSG00000021276.11	ENSMUST00000223407.2	702	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	192.582449875372	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGCTGCTCTTTCTTTTTT	3370	False	NA	-2	True	AATACA	-15	NA	110855558	110845129	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_110845474_110846118_110846249_110850323_110850493_110855499
transcript_21805.known	chr12	-	501	3	FSM	ENSMUSG00000021276.11	ENSMUST00000221414.2	501	3	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	30	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAGGAGGTTAATCTGC	1422	False	NA	-13	True	AATAAA	-14	NA	110843778	110841461	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_110841711_110843274_110843405_110843656
transcript_21811.nnic	chr12	-	476	2	Antisense	novelGene_ENSMUSG00000096942.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1822	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGTTGGTTTTATTTTTT	NA	False	NA	NA	False	NA	NA	NA	110865039	110864511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr12_-_110864662_110864713
transcript_21814.nnic	chr12	-	491	2	Antisense	novelGene_ENSMUSG00000096942.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1820	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGTTGGTTTTATTTTTT	NA	False	NA	NA	False	NA	NA	NA	110865039	110864511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr12_-_110864706_110864742
transcript_21817.nnic	chr12	+	467	2	Genic_Genomic	ENSMUSG00000096942.2	novel	438	1	NA	NA	-36	51	multi-exon	TRUE	canonical	0	0	junction_1	0	1357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACCAACCCAAGGAAAATC	NA	False	NA	NA	False	AATAAA	-28	NA	110864511	110865036	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr12_+_110864739_110864796
transcript_21820.nnic	chr12	+	453	2	Genic_Genomic	ENSMUSG00000096942.2	novel	438	1	NA	NA	-36	53	multi-exon	FALSE	canonical	0	0	junction_1	0	816	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCAACCCAAGGAAAATCTA	NA	False	NA	NA	False	AATAAA	-30	NA	110864511	110865038	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr12_+_110864840_110864913
transcript_21822.nnic	chr12	-	482	2	Antisense	novelGene_ENSMUSG00000096942.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	880	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGTTGGTTTTATTTTTT	NA	False	NA	NA	False	NA	NA	NA	110865039	110864511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr12_-_110864875_110864920
transcript_21824.known	chr12	+	438	1	FSM	ENSMUSG00000096942.2	ENSMUST00000181233.2	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	284905	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGGATGCTGGGTTAA	NA	False	NA	NA	False	NA	NA	NA	110864547	110864985	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_110864500_110865000
transcript_21825.nnic	chr12	-	1612	4	NNC	ENSMUSG00000037904.15	novel	1563	4	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	38.9386982604994	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGGATCTGCCTGGTCT	NA	False	NA	-7	True	NA	NA	NA	110945458	110942860	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_110943983_110944079_110944205_110944381_110944562_110945273
transcript_21826.known	chr12	-	1563	4	FSM	ENSMUSG00000037904.15	ENSMUST00000135131.2	1563	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	45.784519460427	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGAGGGATCTGCCTGGT	NA	False	NA	-9	True	NA	NA	NA	110945429	110942862	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_110943983_110944097_110944205_110944381_110944562_110945273
transcript_21827.known	chr12	-	2577	3	FSM	ENSMUSG00000037904.15	ENSMUST00000128353.8	2577	3	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	17	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTTCGTCTTGACTGGAG	NA	False	NA	NA	False	AAAAAG	-22	NA	110945474	110941786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_110943983_110944381_110944562_110945273
transcript_21828.known	chr12	-	1706	3	FSM	ENSMUSG00000037904.15	ENSMUST00000043459.13	1706	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	30.5	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGGATCTGCCTGGTCT	NA	False	NA	-7	True	NA	NA	NA	110945455	110942860	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_110944205_110944381_110944562_110945273
transcript_2183.known	chr1	-	2850	14	FSM	ENSMUSG00000026019.16	ENSMUST00000122038.8	2850	14	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_13	257.719103084491	1609	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAACTGTCTAGGCTGATA	NA	False	NA	NA	False	AATAAA	-23	NA	60137305	60116026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_60117401_60119677_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665_60136887_60137203
transcript_21832.known	chr12	+	7060	12	FSM	ENSMUSG00000021277.17	ENSMUST00000021706.11	7060	12	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	10.269911118416	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCGGCTCTCTGGCTGTGG	NA	False	NA	9	True	AATAAA	-13	NA	111132896	111233582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_111133037_111186244_111186356_111203995_111204255_111205462_111205515_111208876_111208982_111209804_111209973_111214999_111215081_111217563_111217639_111219097_111219191_111221656_111221798_111227070_111227246_111227922
transcript_21834.nnic	chr12	+	1686	12	NNC	ENSMUSG00000021278.8	novel	1024	7	NA	NA	-302	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	8.49696105130758	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGATAGCCTGGTCCTA	NA	False	NA	28	True	AATAAA	-21	NA	111237226	111242686	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_111237456_111238130_111238250_111238331_111238377_111240576_111240665_111240792_111241011_111241144_111241283_111241387_111241497_111241590_111241674_111241778_111241927_111242005_111242184_111242266_111242361_111242449
transcript_21836.known	chr12	+	1701	12	FSM	ENSMUSG00000021278.8	ENSMUST00000021707.8	1701	12	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	7.23969772438711	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTCTGTCTCAGCCTCCA	NA	False	NA	NA	False	NA	NA	NA	111237528	111242860	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_111237599_111238130_111238250_111238331_111238377_111240576_111240665_111240792_111241011_111241144_111241283_111241387_111241497_111241590_111241674_111241778_111241927_111242005_111242184_111242266_111242361_111242449
transcript_21838.known	chr12	+	1024	7	FSM	ENSMUSG00000021278.8	ENSMUST00000220551.2	1024	7	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	5.58022301426107	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGATAGCCTGGTCCTA	NA	False	NA	28	True	AATAAA	-21	NA	111241107	111242686	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_111241283_111241387_111241497_111241590_111241674_111241778_111241927_111242005_111242184_111242266_111242361_111242449
transcript_21840.known	chr12	+	670	4	FSM	ENSMUSG00000087075.3	ENSMUST00000150384.3	670	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.09120616516523	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTGCTTCTGCTAGTGG	NA	False	NA	NA	False	NA	NA	NA	111373242	111378524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_111373302_111374958_111375046_111376620_111376778_111378157
transcript_21841.nnic	chr12	+	717	4	NNC	ENSMUSG00000087075.3	novel	670	4	NA	NA	-37	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	2.62466929133727	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTGCTTCTGCTAGTGG	NA	False	NA	NA	False	NA	NA	NA	111373205	111378524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_111373312_111374958_111375046_111376620_111376778_111378157
transcript_21849.known	chr12	+	4050	12	FSM	ENSMUSG00000021282.18	ENSMUST00000166123.9	4050	12	0	0	0	0	multi-exon	FALSE	canonical	3	1736	junction_1	190.905151474506	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCACTTGGGGTTTTTTTT	NA	False	NA	12	True	AAAACA	-18	NA	111504449	111513186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_111504674_111504788_111504983_111505841_111506122_111506234_111506317_111506563_111506737_111506894_111507007_111508139_111508280_111508585_111508745_111509113_111509276_111509533_111509699_111509960_111510096_111510962
transcript_21851.known	chr12	+	1969	11	FSM	ENSMUSG00000021282.18	ENSMUST00000050993.11	1969	11	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	700.620753332357	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGACTTTGGGCTATGA	NA	False	NA	18	True	AATAAA	-19	NA	111505215	111511357	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_111505382_111505841_111506122_111506234_111506317_111506563_111506737_111506894_111507007_111508139_111508280_111508585_111508745_111509113_111509276_111509533_111509699_111509960_111510096_111510962
transcript_21854.known	chr12	+	690	5	FSM	ENSMUSG00000021282.18	ENSMUST00000222441.2	690	5	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_1	1016.96128244885	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTCTTTTTAATAAATT	NA	False	NA	NA	False	CATAAA	-32	NA	111504630	111507006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_111504674_111505841_111506122_111506234_111506317_111506563_111506737_111506894
transcript_21856.known	chr12	-	1422	2	FSM	ENSMUSG00000096995.3	ENSMUST00000221597.2	1422	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAATTCTTGTTTCTGGCTT	NA	False	NA	NA	False	ATTAAA	-19	NA	111540774	111538754	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_111539709_111540306
transcript_2187.known	chr1	+	5463	15	FSM	ENSMUSG00000026017.14	ENSMUST00000187978.7	5463	15	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	2.6039608762226	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTAGTTTTTGAAAATT	NA	False	NA	NA	False	ATTAAA	-20	NA	60144502	60193112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_60144587_60147241_60147360_60148380_60148609_60164009_60164071_60165078_60165194_60167147_60167233_60171002_60171193_60175422_60175544_60178358_60178503_60180493_60180728_60183152_60183316_60185267_60185332_60186526_60186640_60186991_60187362_60189739
transcript_21873.known	chr12	-	1472	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	0	0	0	0	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	21471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638772	111635794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
transcript_21874.known	chr12	-	2839	2	FSM	ENSMUSG00000001270.10	ENSMUST00000222705.2	2839	2	0	0	0	0	multi-exon	FALSE	canonical	3	8476	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638716	111635794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_111636176_111636258
transcript_21875.known	chr12	-	453	2	FSM	ENSMUSG00000001270.10	ENSMUST00000220888.2	453	2	0	0	0	0	multi-exon	FALSE	canonical	3	7554	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCCCCCCCCAGTCCCTA	NA	False	NA	NA	False	NA	NA	NA	111637919	111637296	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_111637479_111637648
transcript_21878.known	chr12	+	2131	4	FSM	ENSMUSG00000060950.13	ENSMUST00000168338.2	2131	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	100.883871632464	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTGTCTTGTTCCCACA	NA	False	NA	5	True	AATAAA	-17	NA	111644538	111650336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_111644735_111645036_111645397_111647235_111647503_111649028
transcript_21879.known	chr12	+	601	3	FSM	ENSMUSG00000060950.13	ENSMUST00000221089.2	601	3	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	75.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACGTGGCTGACGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	111644538	111647419	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_111644596_111645036_111645397_111647235
transcript_2188.known	chr1	+	431	1	FSM	ENSMUSG00000082609.2	ENSMUST00000118718.2	431	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	578	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTGACAATGGAAACACA	NA	False	NA	NA	False	AAGAAA	-19	NA	60156413	60156844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_60156400_60156800
transcript_21880.known	chr12	+	2433	3	FSM	ENSMUSG00000060950.13	ENSMUST00000084947.10	2433	3	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_2	1	503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTGTCTTGTTCCCACA	NA	False	NA	5	True	AATAAA	-17	NA	111644538	111650336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_111645397_111647235_111647503_111649028
transcript_21881.known	chr12	-	2139	2	FSM	ENSMUSG00000049792.7	ENSMUST00000054636.7	2139	2	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	0	422	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTCCCCCTGTGCTGTTC	NA	False	NA	NA	False	CATAAA	-20	NA	111679691	111675921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_111677847_111679477
transcript_21886.known	chr12	+	1065	5	FSM	ENSMUSG00000037787.15	ENSMUST00000040519.12	1065	5	0	0	0	0	multi-exon	FALSE	canonical	3	492	junction_3	10.0343161201947	1610	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGTGCAAGTTGAGAATAA	1541	False	NA	NA	False	TTTAAA	-1	NA	111679694	111700654	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_111679853_111689045_111689244_111690773_111690838_111696455_111696547_111700100
transcript_21887.known	chr12	+	671	6	FSM	ENSMUSG00000037787.15	ENSMUST00000163220.10	671	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	244.938686205344	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATTGCTTTTGGGTGTGG	1560	False	NA	NA	False	NA	NA	NA	111679713	111721487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_111679853_111689045_111689244_111690773_111690838_111696455_111696547_111717620_111717710_111721397
transcript_21889.nnic	chr12	+	2389	16	NIC	ENSMUSG00000021288.20	novel	2504	16	NA	NA	24	0	combination_of_known_splicesites	FALSE	canonical	2	52	junction_13	31.1312633144811	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTACCAGAATGAAAGCCT	NA	False	NA	NA	False	ATTAAA	-18	NA	111725306	111773145	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755758_111755894_111761981_111762113_111772441_111772509_111772748
transcript_21890.known	chr12	+	2504	16	FSM	ENSMUSG00000021288.20	ENSMUST00000084941.12	2504	16	0	0	0	0	multi-exon	FALSE	canonical	2	29	junction_13	35.2026514152935	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGAGTGAGTGCGTGCCA	NA	False	NA	NA	False	ATTAAA	-18	NA	111725282	111773209	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755758_111755921_111761981_111762113_111772441_111772509_111772748
transcript_21892.known	chr12	+	2268	16	FSM	ENSMUSG00000021288.20	ENSMUST00000122300.8	2268	16	0	0	0	0	multi-exon	FALSE	canonical	2	29	junction_13	39.7419453754119	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTTCATAACTATTTTT	NA	False	NA	NA	False	ATTAAA	-34	NA	111725446	111773161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755782_111755921_111761981_111762113_111772441_111772509_111772748
transcript_21898.known	chr12	-	2422	8	FSM	ENSMUSG00000021287.13	ENSMUST00000021715.6	2422	8	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_7	12.8809303758284	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAACACTTGCAAATTATT	NA	False	NA	NA	False	AATAAA	-22	NA	111780275	111769626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_111771107_111771177_111771225_111771348_111771562_111774266_111774422_111776185_111776399_111777291_111777430_111778494_111778654_111780258
transcript_21901.nnic	chr12	+	700	4	NNC	ENSMUSG00000021288.20	novel	806	3	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	59.689939595286	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTACCAGAATGAAAGCCT	2808	False	NA	NA	False	ATTAAA	-18	NA	111761739	111773145	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_111761845_111761981_111762113_111772441_111772509_111772748
transcript_21903.known	chr12	+	806	3	FSM	ENSMUSG00000021288.20	ENSMUST00000141435.2	806	3	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	18.5	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTGTTCATAACTATTTT	2854	False	NA	NA	False	ATTAAA	-33	NA	111761785	111773160	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_111762113_111772441_111772509_111772748
transcript_21904.known	chr12	-	2300	7	FSM	ENSMUSG00000021287.13	ENSMUST00000127281.8	2300	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	32.0572404717977	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACACTTGCAAATTATTT	NA	False	NA	NA	False	AATAAA	-23	NA	111778635	111769625	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_111771107_111771177_111771225_111771348_111771474_111774266_111774422_111776185_111776399_111777291_111777430_111778494
transcript_21913.known	chr12	+	1308	7	FSM	ENSMUSG00000021286.9	ENSMUST00000021714.9	1308	7	0	0	0	0	multi-exon	FALSE	canonical	3	470	junction_5	111.029525602677	3422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGCAGGCTCTGGCCTCA	NA	False	NA	16	True	ATTAAA	-17	NA	111780603	111794820	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_111780812_111789675_111789727_111790188_111790358_111791286_111791363_111791450_111791543_111793976_111794120_111794251
transcript_21914.known	chr12	+	1265	8	FSM	ENSMUSG00000021286.9	ENSMUST00000221375.2	1265	8	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_5	290.764860465691	1177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATAAAGTGTATAATTAAAA	NA	False	NA	-19	True	ATTAAA	-22	NA	111780668	111794785	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_111780812_111789675_111789727_111790188_111790358_111791286_111791363_111791450_111791543_111792009_111792067_111793976_111794120_111794251
transcript_21915.known	chr12	-	1662	3	FSM	ENSMUSG00000113769.2	ENSMUST00000221314.2	1662	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	2	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGTTTATAAATGTGTG	NA	False	NA	NA	False	AATAAA	-15	NA	111910918	111908424	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_111909646_111910318_111910432_111910590
transcript_21916.known	chr12	-	1366	3	FSM	ENSMUSG00000113769.2	ENSMUST00000221669.2	1366	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	0.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAAACCATCCCGAGC	NA	False	NA	NA	False	AATAAA	-10	NA	111910909	111908780	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_111909646_111910318_111910501_111910590
transcript_2192.nic	chr1	+	744	5	ISM	ENSMUSG00000073664.12	ENSMUST00000160834.8	15731	55	-29	138142	-29	14288	5prime_fragment	FALSE	canonical	3	9	junction_2	5.58457697592217	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGGTGTGAATACATTCCT	NA	False	NA	3	True	NA	NA	NA	60219728	60239345	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_60219845_60220621_60220914_60233662_60233755_60234173_60234336_60239263
transcript_21921.known	chr12	-	779	2	FSM	ENSMUSG00000113769.2	ENSMUST00000222845.2	779	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTTTAGTGCCCAGCAT	NA	False	NA	NA	False	NA	NA	NA	111910845	111909121	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_111909646_111910590
transcript_21926.known	chr12	-	435	4	FSM	ENSMUSG00000021290.7	ENSMUST00000223191.2	435	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1213.52855572317	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTAACTGCTCCGAATCCA	NA	False	NA	NA	False	NA	NA	NA	111933391	111927949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_111927973_111928866_111928891_111929663_111929788_111933127
transcript_21928.known	chr12	-	366	4	FSM	ENSMUSG00000021290.7	ENSMUST00000021719.7	366	4	0	0	0	0	multi-exon	FALSE	canonical	3	2424	junction_1	129.659382828839	27052	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTGCTTCCCCTGAGTA	NA	False	NA	-7	True	AATAAA	-18	NA	111933411	111927808	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_111927973_111928866_111928891_111929663_111929788_111933357
transcript_21929.known	chr12	-	440	2	FSM	ENSMUSG00000021290.7	ENSMUST00000223435.2	440	2	0	0	0	0	multi-exon	TRUE	canonical	3	2424	junction_1	0	468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTGCTTCCCCTGAGTA	NA	False	NA	-7	True	AATAAA	-18	NA	111929142	111927808	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_111927973_111928866
transcript_21930.known	chr12	-	612	4	FSM	ENSMUSG00000021290.7	ENSMUST00000222874.2	612	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	1208.36593059479	561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTCTGCTTCCCCTGAGT	NA	False	NA	-8	True	AATAAA	-17	NA	111933328	111927809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_111927973_111928866_111928891_111929663_111929788_111933027
transcript_21931.known	chr12	-	437	2	FSM	ENSMUSG00000021290.7	ENSMUST00000222405.2	437	2	0	0	0	0	multi-exon	FALSE	canonical	3	2696	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGGTCCATAACGTGGC	NA	False	NA	NA	False	NA	NA	NA	111933401	111929394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_111929788_111933357
transcript_21932.known	chr12	+	4809	36	FSM	ENSMUSG00000054003.14	ENSMUST00000079009.11	4809	36	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	3.2893147974517	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTATTTTTGCTCAGAGA	NA	False	NA	NA	False	AATAAA	-24	NA	111937992	112035288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_111938297_111951432_111951540_111958895_111958994_111960141_111960364_111960877_111961001_111963220_111963302_111964231_111964397_111968157_111968259_111973945_111974011_111979699_111979755_111979915_111980001_111980875_111980934_111982291_111982397_111989675_111989774_111991095_111991228_111991942_111992109_111992208_111992273_111992344_111992409_111992686_111992732_111993528_111993583_111997621_111997739_111999112_111999221_112001015_112001117_112002787_112002962_112005737_112005850_112006858_112007072_112008095_112008186_112009119_112009381_112010719_112010876_112011233_112011305_112012589_112012700_112013389_112013487_112018301_112018441_112029934_112030054_112034036_112034110_112034612
transcript_21933.known	chr12	+	2722	15	FSM	ENSMUSG00000037686.7	ENSMUST00000079400.6	2722	15	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_3	6.52467842666814	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTTGGCCTGGATGGGT	NA	False	NA	2	True	AATAAA	-16	NA	112073112	112093993	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_112073408_112078625_112078735_112079414_112079527_112080813_112080940_112082000_112082085_112082834_112082962_112086387_112086501_112087298_112087482_112087586_112087701_112088183_112088298_112089377_112089474_112089723_112089888_112091243_112091331_112092745_112092846_112093095
transcript_21936.known	chr12	-	2380	4	FSM	ENSMUSG00000054013.7	ENSMUST00000066791.7	2380	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	2.16024689946929	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCTGTGTGGATGAGGAG	NA	False	NA	-10	True	AATAAA	-20	NA	112477606	112466622	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_112468357_112469675_112469755_112470967_112471106_112477177
transcript_21940.known	chr12	+	1777	13	FSM	ENSMUSG00000011148.15	ENSMUST00000021726.8	1777	13	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_2	10.1005362893924	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCACCGAGAGGTCATTAC	NA	False	NA	NA	False	AATAAA	-19	NA	112586478	112607773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_112586745_112594734_112594838_112598687_112598751_112599128_112599180_112599502_112599570_112600577_112600686_112600813_112600896_112601034_112601162_112601864_112602020_112602827_112602953_112604618_112604717_112606045_112606196_112607391
transcript_21950.known	chr12	+	333	3	FSM	ENSMUSG00000064326.14	ENSMUST00000109755.5	333	3	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	805	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGGCCACAGACAGCACAA	7143	False	NA	-30	True	NA	NA	NA	112611400	112615471	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_112611519_112614258_112614416_112615413
transcript_21952.known	chr12	+	1317	1	FSM	ENSMUSG00000064326.14	ENSMUST00000222729.2	1317	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTCCCTCCCTTCCATCT	NA	False	NA	20	True	AATAAA	-20	NA	112614265	112615582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_112614300_112615600
transcript_21954.known	chr12	+	1982	11	FSM	ENSMUSG00000052160.8	ENSMUST00000063888.5	1982	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	2.92574776766556	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTCTGTGTTCTCTCT	4280	False	NA	NA	False	AATAAA	-45	NA	112727088	112735424	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_112727218_112728959_112729044_112729830_112729998_112730396_112730581_112730881_112731003_112731431_112731560_112733136_112733338_112733931_112734072_112734187_112734354_112734458_112734556_112734859
transcript_21956.nnic	chr12	-	1428	7	NNC	ENSMUSG00000118667.1	novel	11349	7	NA	NA	6803	-9977	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.577350269189626	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCAGGATAAAAAACAGGAAA	NA	False	NA	NA	False	AATAGA	-34	NA	112759474	112748604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_-_112749216_112749335_112749512_112749782_112749925_112750608_112750711_112751520_112751620_112751742_112751799_112759232
transcript_21958.known	chr12	-	11349	7	FSM	ENSMUSG00000118667.1	ENSMUST00000239525.1	11349	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.687184270936277	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGTCCGGTTCGCCAAGG	NA	False	NA	NA	False	AATAAA	-16	NA	112766277	112738627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_112749216_112749335_112749512_112749782_112749925_112750608_112750711_112751520_112751620_112751742_112751799_112766091
transcript_21959.known	chr12	+	1960	5	FSM	ENSMUSG00000037594.12	ENSMUST00000037014.11	1960	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	3.74165738677394	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTTGTTGACTCATT	3901	False	NA	17	True	ATTAAA	-19	NA	112772556	112779872	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_112773429_112774493_112774631_112775802_112775933_112778082_112778200_112779168
transcript_21960.known	chr12	-	2425	2	FSM	ENSMUSG00000047832.10	ENSMUST00000062092.7	2425	2	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	0	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTAGGAGCCTTTTTTT	9646	False	NA	0	True	ATTAAA	-19	NA	112793009	112783848	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_112785733_112792468
transcript_21961.known	chr12	-	1994	2	FSM	ENSMUSG00000047832.10	ENSMUST00000220899.2	1994	2	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_1	0	1145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGGAATGTGTTAGGAGC	9612	False	NA	-8	True	ATTAAA	-11	NA	112793043	112783856	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_112785733_112792925
transcript_21968.known	chr12	-	734	5	FSM	ENSMUSG00000002804.5	ENSMUST00000002881.5	734	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	82.3995600716412	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAATAAAGCTTGTGTAAGT	8854	False	NA	-32	True	GGGGCT	-44	NA	112905737	112898374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_112898671_112901975_112902178_112902414_112902480_112902898_112902943_112905610
transcript_21969.known	chr12	-	1241	5	FSM	ENSMUSG00000002804.5	ENSMUST00000221397.2	1241	5	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_2	18.0277563773199	755	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCATGCGTAACATGAACT	8847	False	NA	NA	False	ATTAAA	-15	NA	112905744	112897910	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_112898671_112901975_112902214_112902414_112902480_112902898_112902943_112905610
transcript_21971.known	chr12	-	355	4	FSM	ENSMUSG00000002804.5	ENSMUST00000221497.2	355	4	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	100.422441051125	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGATGACGCCCAGGCCT	8861	False	NA	NA	False	NA	NA	NA	112905730	112898544	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_112898671_112902414_112902480_112902898_112902943_112905610
transcript_21973.known	chr12	-	945	4	FSM	ENSMUSG00000002804.5	ENSMUST00000222793.2	945	4	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_1	7.71722460186015	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGCTTGTGTAAGTTTTA	8884	False	NA	-28	True	NA	NA	NA	112905707	112898370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_112898671_112901975_112902480_112902898_112902943_112905610
transcript_21974.known	chr12	+	1975	5	FSM	ENSMUSG00000002803.15	ENSMUST00000165079.8	1975	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	16.3152535990097	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAACAAGAACCAAATGTAG	NA	False	NA	NA	False	AATAAA	-9	NA	112940101	112942550	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_112940133_112940295_112940603_112940678_112940770_112940872_112940992_112941123
transcript_21975.known	chr12	+	772	7	FSM	ENSMUSG00000006356.11	ENSMUST00000196015.5	772	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	281.572617434453	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTGGTGGAGGAGAAAG	8194	False	NA	NA	False	NA	NA	NA	113106427	113108750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_113106516_113107078_113107232_113107634_113107776_113107848_113107918_113108018_113108114_113108429_113108488_113108582
transcript_21981.nnic	chr12	+	556	6	NNC	ENSMUSG00000006360.12	novel	445	5	NA	NA	-290	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	168.854256683093	523	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGTGTTTTTGTCTGCT	NA	False	NA	15	True	AATAAA	-15	NA	113115341	113117499	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_113115521_113115701_113115774_113116900_113116996_113117074_113117133_113117237_113117285_113117394
transcript_21985.known	chr12	+	445	5	FSM	ENSMUSG00000006360.12	ENSMUST00000006523.12	445	5	0	0	0	0	multi-exon	FALSE	canonical	3	402	junction_4	13.838352503098	3391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCCTGTGTTTTTGTCTG	NA	False	NA	13	True	AATAAA	-13	NA	113115631	113117497	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_113115774_113116900_113116996_113117074_113117133_113117237_113117285_113117394
transcript_2199.known	chr1	+	15731	55	FSM	ENSMUSG00000073664.12	ENSMUST00000160834.8	15731	55	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_10	5.85232065632702	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTTTGTAGTTCTGTTT	NA	False	NA	NA	False	AATAAA	-22	NA	60219757	60377487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_60219845_60220621_60220914_60233662_60233755_60234173_60234336_60239263_60239346_60240022_60240151_60245492_60245576_60256354_60256441_60261225_60261533_60263783_60263891_60269760_60269845_60273955_60274055_60274139_60274721_60275529_60275663_60276255_60276376_60277730_60278035_60281697_60281784_60283952_60284043_60286774_60286944_60287521_60287656_60290193_60290354_60290462_60290566_60292510_60292668_60294052_60294212_60296588_60296749_60297808_60297898_60299391_60299953_60300568_60300745_60303437_60303592_60304040_60304170_60306917_60307224_60307541_60307692_60309430_60309589_60311291_60311417_60316283_60316411_60317071_60317221_60317825_60317960_60318857_60318960_60320405_60320502_60320983_60321109_60323141_60323283_60326469_60326601_60329073_60329184_60330992_60331111_60332025_60332124_60335037_60335155_60344433_60344524_60349362_60349473_60350085_60350259_60351309_60351405_60358475_60358593_60358829_60358992_60367218_60367368_60368485_60368622_60370049
transcript_21992.known	chr12	+	552	5	FSM	ENSMUSG00000006360.12	ENSMUST00000198597.5	552	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	180.28363070451	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGTGTTTTTGTCTGCT	NA	False	NA	15	True	AATAAA	-15	NA	113109935	113117499	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_113110183_113116900_113116996_113117074_113117133_113117237_113117285_113117394
transcript_21994.known	chr12	+	2441	8	FSM	ENSMUSG00000037466.14	ENSMUST00000049271.13	2441	8	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_3	28.4088230043027	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCTCGCTGTCTCTGAAA	NA	False	NA	NA	False	TATAAA	-11	NA	113120040	113128164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_113120192_113120294_113120374_113120780_113120984_113121197_113121348_113121688_113121788_113124922_113125010_113125332_113125513_113126672
transcript_22.known	ERCC-00046	+	506	1	FSM	ERCC-00046A	DQ516748	506	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	82814	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	506	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00046_+_0_500
transcript_2200.known	chr1	+	2223	13	FSM	ENSMUSG00000049439.14	ENSMUST00000060608.13	2223	13	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	9.38083151964686	156	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGAGGATTGTTTTGTTT	NA	False	NA	28	True	AATAAA	-16	NA	60382481	60427219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_60382617_60391279_60391330_60392067_60392235_60393672_60393816_60402348_60402517_60405807_60405887_60410379_60410496_60411748_60411804_60415225_60415347_60418532_60418645_60421562_60421628_60426063_60426154_60426297
transcript_22003.nnic	chr12	+	1079	6	NNC	ENSMUSG00000037466.14	novel	4000	9	NA	NA	-46	1209	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_3	95.4303934813223	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCATGCCTTTAA	NA	False	NA	NA	False	NA	NA	NA	113119994	113122418	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_113120192_113120294_113120374_113120780_113120984_113121090_113121348_113121688_113121788_113122174
transcript_22004.nnic	chr12	+	1157	6	NNC	ENSMUSG00000037466.14	novel	2441	8	NA	NA	-231	1209	at_least_one_novel_splicesite	FALSE	canonical	3	62	junction_5	67.517108942845	183	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCATGCCTTTAA	NA	False	NA	NA	False	NA	NA	NA	113119809	113122418	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_113120192_113120294_113120374_113120780_113120984_113121197_113121348_113121688_113121788_113122174
transcript_22008.nnic	chr12	+	844	5	NNC	ENSMUSG00000037466.14	novel	584	6	NA	NA	-121	1209	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_2	98.7572782127981	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCATGCCTTTAA	NA	False	NA	NA	False	NA	NA	NA	113119919	113122418	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_113120192_113120294_113120374_113121197_113121348_113121688_113121788_113122174
transcript_2201.known	chr1	+	1671	10	FSM	ENSMUSG00000026782.16	ENSMUST00000187709.7	1671	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_7	51.9553464495364	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCATACCAACATGAACATG	NA	False	NA	NA	False	NA	NA	NA	60448961	60516317	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_60449079_60473401_60473570_60476214_60476392_60483143_60483242_60486418_60486566_60487236_60487362_60492762_60492922_60503687_60503775_60509824_60509999_60515898
transcript_22012.known	chr12	+	394	2	FSM	ENSMUSG00000037466.14	ENSMUST00000196505.2	394	2	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTTACCTGGGTAGTAGTG	NA	False	NA	NA	False	NA	NA	NA	113120049	113120546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_113120192_113120294
transcript_22015.known	chr12	-	397	2	FSM	ENSMUSG00000076709.3	ENSMUST00000194865.2	397	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGTGTTGCAACCACATC	NA	False	NA	NA	False	NA	NA	NA	114955200	114954727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_114955033_114955108
transcript_22017.nnic	chr12	+	2089	4	NNC	ENSMUSG00000042063.12	novel	1958	3	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	16.9771087709958	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACTTGTGTAATGTCCT	NA	False	NA	17	True	NA	NA	NA	116011377	116024212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr12_+_116011487_116011678_116011844_116018341_116018469_116022524
transcript_22019.known	chr12	+	1958	3	FSM	ENSMUSG00000042063.12	ENSMUST00000073551.6	1958	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	2	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACTTGTGTAATGTCCT	NA	False	NA	17	True	NA	NA	NA	116011343	116024212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_116011487_116018341_116018469_116022524
transcript_22021.known	chr12	+	498	2	FSM	ENSMUSG00000042063.12	ENSMUST00000182566.2	498	2	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAAGTCTACTTTCTCCCC	NA	False	NA	NA	False	NA	NA	NA	116011383	116018736	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_116011487_116018341
transcript_22022.known	chr12	-	3721	22	FSM	ENSMUSG00000042050.9	ENSMUST00000039349.8	3721	22	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_13	5.74791690552625	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAATAATAGGGGCTTACTA	NA	False	NA	NA	False	AGTAAA	-17	NA	116226642	116170670	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_116171404_116175344_116175569_116176993_116177126_116177301_116177402_116180100_116180162_116181723_116181776_116182236_116182299_116182400_116182515_116188506_116188670_116189584_116189758_116193200_116193331_116195308_116195398_116196214_116196327_116196936_116197067_116205298_116205402_116209624_116209842_116210319_116210398_116211614_116211924_116218024_116218117_116219450_116219872_116221040_116221095_116226470
transcript_22026.known	chr12	-	1404	3	FSM	ENSMUSG00000042050.9	ENSMUST00000221029.2	1404	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	0.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAAGTATTAGTTTTATT	NA	False	NA	NA	False	AATAAA	-32	NA	116226606	116218657	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_116219872_116221040_116221095_116226470
transcript_22028.known	chr12	-	2941	2	FSM	ENSMUSG00000112980.2	ENSMUST00000220477.2	2941	2	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	0	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAAATAAAATTAGAGGAA	NA	False	NA	NA	False	NA	NA	NA	116368830	116365566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_-_116368264_116368586
transcript_2203.known	chr1	+	5768	9	FSM	ENSMUSG00000026782.16	ENSMUST00000052332.15	5768	9	0	0	0	0	multi-exon	TRUE	canonical	3	110	junction_7	24.0559244262198	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAGTGTCTTGTAGAATC	NA	False	NA	15	True	AATAAA	-17	NA	60448777	60520317	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_60449079_60473401_60473570_60476214_60476392_60483143_60483242_60486418_60486566_60487236_60487362_60492762_60492922_60509824_60509999_60515898
transcript_22030.known	chr12	+	4684	29	FSM	ENSMUSG00000042029.8	ENSMUST00000084828.5	4684	29	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	40.0130559050061	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATCTTGTTTAAAAGTGAC	NA	False	NA	NA	False	TATAAA	-30	NA	116369021	116425231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_116369082_116369321_116369498_116370817_116370931_116375994_116376184_116376680_116376796_116378357_116378513_116379044_116379180_116382842_116382938_116384307_116384378_116386815_116386903_116388241_116388335_116389398_116389525_116390195_116390376_116391275_116391429_116393273_116393497_116393714_116393819_116398203_116398378_116401590_116401662_116402217_116402369_116402484_116402659_116403378_116403496_116403579_116403721_116404161_116404262_116406556_116406745_116407920_116408062_116411276_116411381_116413995_116414097_116415886_116415987_116424183
transcript_22046.known	chr12	+	397	4	FSM	ENSMUSG00000042029.8	ENSMUST00000221114.2	397	4	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	84.194219912454	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTATAATAAATGAACATGA	NA	False	NA	NA	False	CATAAA	-41	NA	116369040	116376734	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_116369082_116370817_116370931_116375994_116376184_116376680
transcript_22048.known	chr12	+	446	4	FSM	ENSMUSG00000042029.8	ENSMUST00000222469.2	446	4	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	104.39667938525	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATGAGAACTATGGAGCC	NA	False	NA	NA	False	AATAAA	-3	NA	116369034	116376747	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_116369112_116370817_116370931_116375994_116376184_116376680
transcript_22056.known	chr12	+	2957	10	FSM	ENSMUSG00000021175.16	ENSMUST00000021592.16	2957	10	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_2	34.4673758792282	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTTGTCACCTGTCTGT	NA	False	NA	14	True	AATAAA	-14	NA	117807249	117842441	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr12_+_117807693_117828764_117828900_117833740_117833873_117835818_117836173_117837455_117837528_117837630_117837802_117838418_117838542_117839309_117839460_117840640_117840778_117841201
transcript_22061.known	chr13	+	781	1	FSM	ENSMUSG00000114003.2	ENSMUST00000221154.2	781	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	723	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATGGTCTCTAGGGGAC	NA	False	NA	NA	False	NA	NA	NA	3348886	3349667	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_3348900_3349700
transcript_22064.known	chr13	+	593	5	FSM	ENSMUSG00000097709.9	ENSMUST00000180567.8	593	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	7.79021822544144	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTTGTTTTTGCCTGCTT	NA	False	NA	NA	False	NA	NA	NA	3528302	3542406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_3528353_3529521_3529575_3529908_3530002_3535048_3535221_3542181
transcript_22065.known	chr13	+	868	5	FSM	ENSMUSG00000097709.9	ENSMUST00000189464.7	868	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	7.15454401062709	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTTTTTCTAAGACAGGG	NA	False	NA	NA	False	NA	NA	NA	3528242	3548570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_3528353_3529908_3530002_3535048_3535221_3547959_3548157_3548274
transcript_22068.nic	chr13	+	713	5	NIC	ENSMUSG00000097709.9	novel	593	5	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	7.79021822544144	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTTGTTTTTGCCTGCTT	NA	False	NA	NA	False	NA	NA	NA	3528220	3542406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_3528391_3529521_3529575_3529908_3530002_3535048_3535221_3542181
transcript_22069.known	chr13	+	923	4	FSM	ENSMUSG00000097709.9	ENSMUST00000185835.7	923	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	6.84754619472471	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAGGGCGTTGTTGGAAAA	NA	False	NA	NA	False	NA	NA	NA	3528276	3535749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_3528353_3529521_3529575_3529908_3530002_3535048
transcript_22071.known	chr13	+	670	4	FSM	ENSMUSG00000097709.9	ENSMUST00000191585.7	670	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	5.24933858267454	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTCCCCTCTTCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	3528245	3539283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_3528353_3529908_3530002_3535048_3535221_3538985
transcript_22073.known	chr13	+	2568	4	FSM	ENSMUSG00000097709.9	ENSMUST00000221008.2	2568	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	6.18241233033047	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTTATGGACAAGGTTGT	NA	False	NA	NA	False	TTTAAA	-17	NA	3528266	3544398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_3528353_3529908_3530002_3535048_3535221_3542181
transcript_22075.nic	chr13	+	681	4	NIC	ENSMUSG00000097709.9	novel	593	5	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	13.1993265821489	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTTGTTTTTGCCTGCTT	NA	False	NA	NA	False	NA	NA	NA	3528217	3542406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_3528391_3529908_3530002_3535030_3535221_3542181
transcript_22076.known	chr13	+	630	4	FSM	ENSMUSG00000097709.9	ENSMUST00000186610.7	630	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	9.84321537348893	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGGTCCATATGGCTTC	NA	False	NA	NA	False	NA	NA	NA	3528303	3539263	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_3528391_3529908_3530002_3535048_3535221_3538985
transcript_22078.known	chr13	+	3704	3	FSM	ENSMUSG00000097709.9	ENSMUST00000180836.8	3704	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	6	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAGAAAAATTAAGAAATC	NA	False	NA	NA	False	NA	NA	NA	3528254	3538561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_3528353_3529908_3530002_3535048
transcript_22086.known	chr13	+	2077	10	FSM	ENSMUSG00000021218.11	ENSMUST00000059515.8	2077	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	614.94494383694	1132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTTGGTATTGAGTGTCT	NA	False	NA	35	True	AATAAA	-18	NA	3588129	3615820	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_3588344_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
transcript_22087.known	chr13	+	4453	6	FSM	ENSMUSG00000033781.8	ENSMUST00000042288.8	4453	6	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_4	6.61513416341649	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCGAGTTCGAGGATTTG	NA	False	NA	NA	False	AATAAA	-18	NA	3684031	3703822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_3684176_3692064_3692253_3693474_3693626_3694915_3695051_3699318_3699511_3700179
transcript_2209.known	chr1	+	362	2	FSM	ENSMUSG00000026782.16	ENSMUST00000189649.2	362	2	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTGCAACATATTAACTTA	NA	False	NA	NA	False	NA	NA	NA	60448966	60473651	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_60449079_60473401
transcript_22092.known	chr13	+	456	2	FSM	ENSMUSG00000033781.8	ENSMUST00000156595.2	456	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGAGCATTCTTTGGAGA	NA	False	NA	NA	False	CATAAA	-15	NA	3684088	3684782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_3684176_3684413
transcript_22093.known	chr13	-	2680	12	FSM	ENSMUSG00000021215.16	ENSMUST00000091853.12	2680	12	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_9	26.5501241222916	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTTTCCTCCTAATTGT	NA	False	NA	NA	False	TTTAAA	-15	NA	3968220	3933332	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_3934474_3934802_3934990_3936047_3936219_3936537_3936796_3937370_3937448_3937570_3937668_3937977_3938041_3938354_3938523_3938870_3938979_3957796_3957857_3962867_3962935_3967937
transcript_22094.known	chr13	-	3871	10	FSM	ENSMUSG00000021215.16	ENSMUST00000099946.6	3871	10	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_9	50.6888353061239	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGCAGCATTTCTGTTGG	NA	False	NA	NA	False	AATAAA	-18	NA	3943578	3932017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_3934474_3934802_3934990_3936047_3936219_3936537_3936796_3937370_3937448_3937570_3937668_3937977_3938041_3938354_3938523_3938870_3938979_3943292
transcript_22096.nnic	chr13	-	1039	4	NNC	ENSMUSG00000021215.16	novel	2680	12	NA	NA	-15	-6240	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	77.8888096369862	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTAGTCACTTGTCGGCA	NA	False	NA	NA	False	ATTAAA	-15	NA	3968235	3949214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_3949829_3957796_3957857_3962867_3962935_3967937
transcript_22097.known	chr13	-	597	2	FSM	ENSMUSG00000021215.16	ENSMUST00000223258.2	597	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGTCTGGACTACTCTGT	NA	False	NA	NA	False	ATTAAA	-18	NA	3968178	3967308	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_3967665_3967937
transcript_22100.known	chr13	-	569	1	FSM	ENSMUSG00000021215.16	ENSMUST00000222017.2	569	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAAAGAAAAATATTT	NA	False	NA	NA	False	AAGAAA	-3	NA	3943543	3942974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_3943000_3943500
transcript_22102.known	chr13	-	1200	9	FSM	ENSMUSG00000021214.15	ENSMUST00000021635.9	1200	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2.27760839478607	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCTACTCTTGTGTATGA	NA	False	NA	NA	False	AATAAA	-22	NA	4200653	4182620	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_4182836_4185201_4185285_4186600_4186767_4187132_4187243_4192125_4192249_4193216_4193295_4194288_4194406_4195204_4195373_4200513
transcript_22104.known	chr13	-	1103	8	FSM	ENSMUSG00000021214.15	ENSMUST00000110704.9	1103	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	2.44114392723358	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTGTGTATGATTTGAAT	NA	False	NA	NA	False	AATAAA	-29	NA	4200627	4182613	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_4182836_4185201_4185285_4186600_4186767_4187132_4187243_4192125_4192249_4194288_4194406_4195204_4195373_4200513
transcript_22107.nic	chr13	+	1386	10	NIC	ENSMUSG00000021213.13	novel	1262	9	NA	NA	17	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	3.02254900194121	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATATTTTCTTTGTTT	7374	False	NA	NA	False	AATAAA	-17	NA	4241165	4255595	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_4241310_4242293_4242435_4244032_4244201_4244675_4244793_4246431_4246510_4246987_4247111_4247799_4247910_4248476_4248643_4253365_4253449_4255339
transcript_22108.known	chr13	+	1262	9	FSM	ENSMUSG00000021213.13	ENSMUST00000021634.4	1262	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	2.98956518577535	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATATTTTCTTTGTTT	7357	False	NA	NA	False	AATAAA	-17	NA	4241148	4255595	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_4241310_4244032_4244201_4244675_4244793_4246431_4246510_4246987_4247111_4247799_4247910_4248476_4248643_4253365_4253449_4255339
transcript_22109.known	chr13	+	747	3	FSM	ENSMUSG00000071551.14	ENSMUST00000129751.2	747	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGACAGGAGGGTTGAACAA	NA	False	NA	NA	False	NA	NA	NA	4295326	4298680	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_4295387_4296801_4296885_4298076
transcript_22110.nnic	chr13	+	673	3	NNC	ENSMUSG00000071551.14	novel	5832	10	NA	NA	140	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	1.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGTCGGTTGTTTGTTTCC	NA	False	NA	NA	False	TATAAA	-19	NA	4295466	4298358	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_4295775_4296801_4296885_4298076
transcript_22112.known	chr13	-	1261	9	FSM	ENSMUSG00000021211.5	ENSMUST00000021632.5	1261	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.89983551919633	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATATTTCTGGTTTTAT	NA	False	NA	NA	False	AATAAA	-18	NA	4329432	4318174	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_4318430_4320159_4320243_4322194_4322361_4322927_4323038_4323729_4323853_4324345_4324424_4325722_4325840_4326227_4326396_4329271
transcript_22114.known	chr13	-	3463	10	FSM	ENSMUSG00000045410.19	ENSMUST00000091848.7	3463	10	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_4	13.8082101181387	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGACTGTCTATACTGTGA	NA	False	NA	NA	False	NA	NA	NA	4659173	4640748	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_4643298_4643560_4643644_4645069_4645154_4645658_4645732_4647483_4647582_4648768_4648892_4651216_4651295_4652679_4652797_4657389_4657558_4659083
transcript_22117.known	chr13	-	3288	9	FSM	ENSMUSG00000045410.19	ENSMUST00000110691.10	3288	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	49.5807422292164	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTGGTAGACTGTCTAT	NA	False	NA	NA	False	NA	NA	NA	4659173	4640755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_4643298_4643560_4643644_4645069_4645154_4645658_4645732_4647483_4647582_4648768_4648892_4651216_4651295_4652679_4652797_4659083
transcript_22120.nic	chr13	-	589	3	ISM	ENSMUSG00000045410.19	ENSMUST00000131982.2	412	4	-78	1228	-38	-1228	5prime_fragment	FALSE	canonical	3	176	junction_2	4	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTGTCCTGTGACCTATT	NA	False	NA	NA	False	ATTAAA	-15	NA	4659211	4652503	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_4652797_4657389_4657558_4659083
transcript_22121.known	chr13	-	321	3	FSM	ENSMUSG00000045410.19	ENSMUST00000220936.2	321	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	88	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTACTACATAGACCGGCC	NA	False	NA	NA	False	AATAAA	-23	NA	4659117	4657083	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_4657203_4657389_4657558_4659083
transcript_22123.known	chr13	+	1115	5	FSM	ENSMUSG00000000078.8	ENSMUST00000222857.2	1115	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	94.5119040121402	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTCTGAAGGAGCAGAGGG	NA	False	NA	NA	False	NA	NA	NA	5911539	5917274	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_5911842_5913556_5913625_5914766_5915344_5916637_5916762_5917230
transcript_22125.known	chr13	+	4225	4	FSM	ENSMUSG00000000078.8	ENSMUST00000000080.8	4225	4	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_1	9.7410927974683	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGAGCCTGATTGTTTTT	NA	False	NA	8	True	CATAAA	-18	NA	5911480	5920393	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_5911842_5914766_5915344_5916637_5916762_5917230
transcript_22129.nic	chr13	+	3443	27	NIC	ENSMUSG00000021193.11	novel	3906	27	NA	NA	-11	0	combination_of_known_junctions	TRUE	canonical	3	577	junction_1	112.248614598533	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGTTTTACTCATTATT	NA	False	NA	16	True	TATAAA	-17	NA	6598173	6630078	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_6598266_6599618_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685
transcript_22130.known	chr13	+	3906	27	FSM	ENSMUSG00000021193.11	ENSMUST00000222485.2	3906	27	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_1	134.848435629472	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGGTTGTTACCTCAGG	NA	False	NA	NA	False	NA	NA	NA	6598186	6630551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_6598266_6599615_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685
transcript_2214.known	chr1	-	701	6	FSM	ENSMUSG00000026014.16	ENSMUST00000182085.8	701	6	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	5.5281099844341	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGTTTTAAAGCTTGTTG	NA	False	NA	-5	True	TTTAAA	-4	NA	60538709	60522343	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_60522500_60532696_60532840_60534573_60534695_60535383_60535483_60537582_60537694_60538638
transcript_22150.known	chr13	+	3318	26	FSM	ENSMUSG00000021193.11	ENSMUST00000021611.10	3318	26	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	213.865767246654	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGTTTTACTCATTATT	NA	False	NA	16	True	TATAAA	-17	NA	6598184	6630078	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_6598266_6599618_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685
transcript_22151.known	chr13	-	2679	22	FSM	ENSMUSG00000021196.15	ENSMUST00000021614.14	2679	22	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_7	371.222751277127	661	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACTCCCATGGTACTTGG	NA	False	NA	-14	True	ATTAAA	-10	NA	6698761	6631217	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6643136_6643290_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
transcript_22152.known	chr13	-	1726	13	FSM	ENSMUSG00000021196.15	ENSMUST00000148999.8	1726	13	0	0	0	0	multi-exon	FALSE	canonical	3	963	junction_6	84.7667961068615	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAACCTTAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	6698761	6652436	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
transcript_22153.known	chr13	-	330	1	FSM	ENSMUSG00000068324.6	ENSMUST00000089635.6	330	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAACTAATGGAGAGTAAAT	NA	False	NA	NA	False	NA	NA	NA	6712930	6712600	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_6712600_6712900
transcript_22155.known	chr13	-	4526	14	FSM	ENSMUSG00000021147.18	ENSMUST00000021572.11	4526	14	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_4	12.9902102419544	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTATTATAAAGGTTTGT	NA	False	NA	-29	True	ATTAAA	-18	NA	8921080	8853030	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_8855983_8869898_8870014_8870446_8870582_8885332_8885475_8886818_8887060_8892765_8892843_8894822_8894868_8897650_8897723_8899569_8899706_8903705_8903771_8904035_8904132_8906867_8906965_8911123_8911302_8920905
transcript_22160.known	chr13	-	1780	5	FSM	ENSMUSG00000021147.18	ENSMUST00000164183.9	1780	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	30.7774267930248	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTATACAGTGTGTG	NA	False	NA	NA	False	ATTAAA	-23	NA	8921015	8902704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_8903771_8904035_8904132_8906867_8906965_8911123_8911302_8920672
transcript_22161.known	chr13	-	3780	5	FSM	ENSMUSG00000021147.18	ENSMUST00000176922.8	3780	5	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_4	6.36396103067893	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCATCTGTTACAAGTGTG	NA	False	NA	NA	False	NA	NA	NA	8921059	8900515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_8903771_8904035_8904132_8906867_8906965_8911123_8911302_8920905
transcript_22164.known	chr13	-	699	5	FSM	ENSMUSG00000021147.18	ENSMUST00000176587.2	699	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	37.6198086119534	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATTCTGTGTATACAGTGT	NA	False	NA	NA	False	ATTAAA	-20	NA	8911258	8902707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_8903014_8903705_8903771_8904035_8904132_8906867_8906965_8911123
transcript_22165.known	chr13	+	3027	5	FSM	ENSMUSG00000058258.15	ENSMUST00000169314.9	3027	5	0	0	0	0	multi-exon	TRUE	canonical	3	487	junction_1	56.3576747213722	466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATAGGTAAAATACTTGT	NA	False	NA	75	True	TATAAA	-6	NA	8935536	8942487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_8936033_8936767_8936941_8937520_8937614_8937958_8938090_8940353
transcript_22166.known	chr13	+	737	5	FSM	ENSMUSG00000058258.15	ENSMUST00000177397.8	737	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	250.233266173784	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCCTCTTCAAATGGTGG	NA	False	NA	NA	False	NA	NA	NA	8935978	8940594	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_8936033_8936767_8936941_8937520_8937614_8937958_8938135_8940353
transcript_22169.known	chr13	-	2442	16	FSM	ENSMUSG00000021149.9	ENSMUST00000021574.8	2442	16	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_11	264.705085372802	742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	AATAAA	-41	NA	9046086	9022515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_9023311_9024199_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037996_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9045984
transcript_2217.known	chr1	+	525	1	FSM	ENSMUSG00000081382.2	ENSMUST00000121555.2	525	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	412	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTAGACACAAAGACCCAC	NA	False	NA	NA	False	NA	NA	NA	60940056	60940581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_60940100_60940600
transcript_22170.known	chr13	-	642	6	FSM	ENSMUSG00000021149.9	ENSMUST00000220546.2	642	6	0	0	0	0	multi-exon	FALSE	canonical	1	15	junction_1	296.183321610114	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGTGACT	NA	False	NA	NA	False	NA	NA	NA	9039149	9034801	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_9034924_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088
transcript_22171.known	chr13	-	4117	15	FSM	ENSMUSG00000021156.18	ENSMUST00000110636.9	4117	15	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_14	35.3204716033877	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGTCAGTAAGCTGCTT	NA	False	NA	2	True	AATAAA	-22	NA	9815350	9734868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_9737021_9739098_9739285_9739487_9739761_9740481_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9760181_9760344_9770808_9770969_9785367_9785503_9815090
transcript_22179.known	chr13	-	3796	14	FSM	ENSMUSG00000021156.18	ENSMUST00000062658.15	3796	14	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_13	37.5302639220559	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAACTCTTGTCAGTAAGC	NA	False	NA	-3	True	AATAAA	-17	NA	9815196	9734873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_9737021_9739098_9739285_9739487_9739761_9740481_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9770808_9770969_9785367_9785503_9815090
transcript_22184.nic	chr13	-	863	7	ISM	ENSMUSG00000021156.18	ENSMUST00000154994.8	867	8	16	542	-5	-537	5prime_fragment	FALSE	canonical	3	65	junction_6	41.9023335335343	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTCTTTGTAATTCATAC	NA	False	NA	0	True	ATTAAA	-22	NA	9814464	9745710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_9745863_9747679_9747773_9748663_9748742_9760181_9760344_9770808_9770969_9785367_9785503_9814381
transcript_22185.nic	chr13	-	982	7	ISM	ENSMUSG00000021156.18	ENSMUST00000223421.2	1582	13	-56	6143	8	-537	5prime_fragment	FALSE	canonical	3	58	junction_6	43.4626276242015	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTCTTTGTAATTCATAC	NA	False	NA	0	True	ATTAAA	-22	NA	9814965	9745710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_9745863_9747679_9747773_9748663_9748742_9760181_9760344_9770808_9770969_9785367_9785503_9814763
transcript_22186.nic	chr13	-	979	7	ISM	ENSMUSG00000021156.18	ENSMUST00000110636.9	4117	15	61	10842	17	-537	5prime_fragment	FALSE	canonical	3	34	junction_6	49.4873721266345	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTCTTTGTAATTCATAC	NA	False	NA	0	True	ATTAAA	-22	NA	9815289	9745710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_9745863_9747679_9747773_9748663_9748742_9760181_9760344_9770808_9770969_9785367_9785503_9815090
transcript_22191.nic	chr13	-	747	6	ISM	ENSMUSG00000021156.18	ENSMUST00000062658.15	3796	14	-23	10837	-23	-537	5prime_fragment	FALSE	canonical	3	34	junction_5	56.1334125098412	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTCTTTGTAATTCATAC	NA	False	NA	0	True	ATTAAA	-22	NA	9815219	9745710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_9745863_9747679_9747773_9748663_9748742_9770808_9770969_9785367_9785503_9815090
transcript_22194.known	chr13	-	8294	33	FSM	ENSMUSG00000021311.10	ENSMUST00000099856.6	8294	33	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_5	17.0824917221552	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGTATGATGACTTTATA	5961	False	NA	0	True	AATAAA	-26	NA	12272981	12197597	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_12201978_12202926_12203040_12204232_12204426_12205089_12205291_12208499_12208697_12210123_12210280_12212798_12212875_12213931_12214031_12215082_12215165_12219628_12219750_12220175_12220244_12227273_12227375_12227556_12227665_12230298_12230452_12231695_12231786_12236307_12236449_12237040_12237158_12240347_12240528_12242569_12242756_12245830_12245972_12247787_12247901_12250342_12250423_12252866_12252935_12254534_12254597_12256450_12256552_12258820_12258916_12259440_12259504_12262204_12262312_12262778_12262872_12264730_12264801_12265487_12265578_12268649_12268865_12272747
transcript_22200.known	chr13	+	480	1	FSM	ENSMUSG00000094185.3	ENSMUST00000180224.3	480	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATGTACACAAAGAAATAA	NA	False	NA	NA	False	NA	NA	NA	12393038	12393518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_12393000_12393500
transcript_22202.known	chr13	-	2736	10	FSM	ENSMUSG00000057554.14	ENSMUST00000099820.10	2736	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	22.4152725712726	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTGGAATGAATACTCTC	NA	False	NA	-20	True	ATTAAA	-11	NA	12476384	12454304	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_12455876_12462027_12462194_12463299_12463389_12466281_12466309_12467602_12467660_12468165_12468286_12469615_12469827_12471224_12471314_12474054_12474198_12476121
transcript_22203.known	chr13	-	2792	10	FSM	ENSMUSG00000057554.14	ENSMUST00000099821.10	2792	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	18.5718491337539	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAATACTCTCTGGAATA	NA	False	NA	-13	True	ATTAAA	-18	NA	12476619	12454297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_12455876_12462027_12462194_12463299_12463389_12466281_12466309_12467602_12467660_12468165_12468286_12469615_12469827_12471224_12471314_12474054_12474198_12476307
transcript_22204.known	chr13	-	1148	10	FSM	ENSMUSG00000057554.14	ENSMUST00000144283.2	1148	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_5	11.9948548640605	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACCATGACTGCCAAAACC	NA	False	NA	-65	True	NA	NA	NA	12476376	12455725	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_12455876_12462027_12462194_12463299_12463389_12466281_12466309_12467602_12467660_12468138_12468286_12469615_12469827_12471224_12471314_12474054_12474198_12476307
transcript_22216.nic	chr13	-	900	5	ISM	ENSMUSG00000057554.14	ENSMUST00000144283.2	1148	10	-49	12221	-38	-328	5prime_fragment	FALSE	canonical	3	52	junction_2	4.96865172858795	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGTATTTGAATTTA	NA	False	NA	NA	False	AGTAAA	-18	NA	12476425	12467946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_12468286_12469615_12469827_12471224_12471314_12474054_12474198_12476307
transcript_22218.known	chr13	+	6780	45	FSM	ENSMUSG00000050244.10	ENSMUST00000059270.10	6780	45	0	0	0	0	multi-exon	TRUE	canonical	3	181	junction_14	60.7064258923889	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACTGGTATTTGTCTTTA	1714	False	NA	5	True	AGTAAA	-19	NA	12410251	12453774	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_12410352_12410620_12410795_12411302_12411520_12413783_12413926_12415930_12416033_12416330_12416472_12417594_12417807_12418025_12418160_12419768_12419872_12420903_12421015_12421405_12421524_12422397_12422506_12423534_12423631_12424089_12424179_12425276_12425489_12426100_12426223_12426925_12427118_12428105_12428290_12428392_12428530_12429253_12429447_12430297_12430468_12430831_12430991_12432340_12432584_12432978_12433111_12435922_12436027_12436158_12436303_12436921_12437041_12437121_12437244_12438514_12438644_12439500_12439732_12441034_12441162_12441642_12441804_12444647_12444695_12445021_12445146_12445791_12445933_12446560_12446854_12447509_12447661_12448492_12448652_12448797_12448933_12449067_12449173_12449254_12449424_12449927_12450083_12450550_12450710_12452714_12452824_12453469
transcript_22219.known	chr13	+	4239	16	FSM	ENSMUSG00000057069.8	ENSMUST00000071973.8	4239	16	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_15	21.5185707910374	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTGTTTCTTTGTTTTT	NA	False	NA	NA	False	ATTAAA	-17	NA	12580763	12624417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_12581060_12589700_12589821_12594056_12594141_12595254_12595297_12596549_12596633_12598417_12598492_12605641_12605763_12605865_12605913_12608388_12608401_12610578_12610606_12614749_12614843_12614975_12615223_12616624_12616695_12617199_12617287_12619216_12619351_12621715
transcript_22220.known	chr13	-	1301	7	FSM	ENSMUSG00000097715.3	ENSMUST00000221825.2	1301	7	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	60.7602300485733	206	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGAAATTTGTCATTCTT	NA	False	NA	NA	False	AATATA	-42	NA	12665269	12632228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_12632389_12632613_12632739_12634654_12634784_12636246_12636397_12638757_12638981_12645583_12645634_12664805
transcript_22221.nic	chr13	+	572	2	ISM	ENSMUSG00000110123.2	ENSMUST00000209949.2	915	10	24490	-217	24490	217	3prime_fragment	FALSE	canonical	3	59	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATGTTTGTTTCACATT	NA	False	NA	NA	False	TATAAA	-36	NA	13522438	13525229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_+_13522733_13524951
transcript_22228.known	chr13	-	2351	8	FSM	ENSMUSG00000021306.12	ENSMUST00000223093.2	2351	8	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	66.0247325335169	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGCAGACTCCTGACAGC	NA	False	NA	NA	False	AATAAA	-26	NA	13568149	13533019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_13534009_13535412_13535658_13535882_13536008_13538028_13538158_13539630_13539781_13542173_13542397_13548943_13548994_13567709
transcript_22236.known	chr13	-	2971	7	FSM	ENSMUSG00000021306.12	ENSMUST00000021738.10	2971	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	74.282680798869	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTCAACTGGTGCTGGA	NA	False	NA	NA	False	AATAAA	-19	NA	13568199	13532204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_13534009_13535882_13536008_13538028_13538158_13539630_13539781_13542173_13542397_13548943_13548994_13567709
transcript_22240.known	chr13	-	2975	7	FSM	ENSMUSG00000021306.12	ENSMUST00000222958.2	2975	7	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_6	98.1201078044432	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAAAGACTACAGCTCT	NA	False	NA	NA	False	AATAAA	-22	NA	13568180	13532228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_13534009_13535882_13536008_13538028_13538158_13539630_13539781_13542173_13542397_13548943_13548994_13567662
transcript_22245.known	chr13	-	3634	7	FSM	ENSMUSG00000021306.12	ENSMUST00000220628.2	3634	7	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_3	22.9249984853992	401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCATTTTGTAGAGTTTTC	NA	False	NA	NA	False	ATTAAA	-20	NA	13568209	13533200	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_13535658_13535882_13536008_13538028_13538158_13539630_13539781_13542173_13542397_13548943_13548994_13567709
transcript_22249.known	chr13	+	6091	20	FSM	ENSMUSG00000005397.9	ENSMUST00000005532.9	6091	20	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	184.261632008595	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGATGTGTTTTTGCTGT	NA	False	NA	12	True	ATTAAA	-27	NA	13612135	13686854	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_13612512_13638306_13638607_13639894_13640122_13642815_13643193_13647364_13647515_13650743_13650996_13652722_13652924_13656602_13656849_13658234_13658379_13661223_13661350_13663590_13663741_13664629_13664753_13674143_13674372_13675030_13675204_13676983_13677111_13680920_13681093_13682194_13682353_13683302_13683427_13684017_13684131_13684530
transcript_22250.nic	chr13	+	1872	6	ISM	ENSMUSG00000005397.9	ENSMUST00000222142.2	3803	14	-108	24856	8	-24856	5prime_fragment	FALSE	canonical	3	684	junction_5	39.004615111548	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTGGTGGAGGAATGGT	NA	False	NA	NA	False	ATTAAA	-19	NA	13612143	13651193	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_+_13612512_13638306_13638607_13639894_13640122_13642815_13643193_13647364_13647515_13650743
transcript_22251.known	chr13	-	1853	17	FSM	ENSMUSG00000039233.13	ENSMUST00000162326.2	1853	17	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	33.754571449657	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGATTTCTCTGCCCTTT	NA	False	NA	-6	True	AATAAA	-13	NA	14214223	14172537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_14172767_14172947_14173040_14174642_14174703_14175694_14175764_14178117_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199_14183277_14184213_14184317_14185126_14185227_14189319_14189409_14194286_14194473_14202282_14202368_14203860_14203992_14214122
transcript_22262.nic	chr13	+	2493	13	NIC	ENSMUSG00000039242.11	novel	2439	13	NA	NA	45	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_12	55.6334107249312	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCCTTTTCCTATTTTTG	NA	False	NA	NA	False	AATAAA	-22	NA	14129098	14173659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_14129505_14140894_14141043_14145351_14145453_14150022_14150220_14155185_14155282_14161937_14162049_14165373_14165453_14165953_14166138_14168999_14169126_14169700_14169861_14170311_14170369_14171477_14171610_14172963
transcript_22263.known	chr13	+	2439	13	FSM	ENSMUSG00000039242.11	ENSMUST00000221974.2	2439	13	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_12	57.9839537190151	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGCTGTAGTACCCTGAA	NA	False	NA	NA	False	AATAAA	-30	NA	14129209	14173688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_14129505_14140894_14141043_14145351_14145453_14150022_14150220_14155185_14155282_14161937_14162049_14165373_14165453_14165953_14166138_14168999_14169126_14169700_14169861_14170311_14170369_14171477_14171638_14172963
transcript_22265.known	chr13	-	1855	13	FSM	ENSMUSG00000039233.13	ENSMUST00000159239.8	1855	13	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_7	16.4519502390041	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGAAAAAAAAGGAGAAAACA	NA	False	NA	NA	False	NA	NA	NA	14214206	14177648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199_14183277_14184213_14184317_14185126_14185227_14189319_14189409_14194286_14194473_14202282_14202368_14203860_14203992_14214122
transcript_22266.known	chr13	+	3892	12	FSM	ENSMUSG00000039242.11	ENSMUST00000099747.5	3892	12	0	0	0	0	multi-exon	TRUE	canonical	3	178	junction_5	19.409889274617	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCCTTTTCCTATTTTTG	NA	False	NA	NA	False	AATAAA	-22	NA	14129053	14173659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_14129505_14140894_14141043_14145351_14145453_14150022_14150220_14155185_14155282_14161937_14162049_14165373_14165453_14165953_14166138_14168999_14169126_14169700_14169861_14170311_14170369_14171477
transcript_22276.known	chr13	-	933	5	FSM	ENSMUSG00000039233.13	ENSMUST00000160304.8	933	5	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	14.9059551857638	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACCCCTCAGTGCAGGTG	NA	False	NA	NA	False	NA	NA	NA	14214181	14188936	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_14189409_14194286_14194473_14202282_14202368_14203860_14203992_14214122
transcript_22278.known	chr13	-	909	4	FSM	ENSMUSG00000039233.13	ENSMUST00000160776.2	909	4	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_1	12.4988888395018	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCCAGGGCTACACAGAG	NA	False	NA	NA	False	NA	NA	NA	14214202	14193859	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_14194473_14202282_14202368_14203860_14203992_14214122
transcript_22283.known	chr13	-	1626	15	FSM	ENSMUSG00000039233.13	ENSMUST00000159893.8	1626	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	44.8594744616964	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTCTCTGCCCTTTCTGT	NA	False	NA	-2	True	AATAAA	-17	NA	14214164	14172533	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_14172767_14172947_14173040_14174642_14174703_14175694_14175764_14178127_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14184213_14184317_14185126_14185227_14189319_14189409_14194286_14194473_14203860_14203992_14214122
transcript_22284.known	chr13	+	3020	15	FSM	ENSMUSG00000039219.19	ENSMUST00000110533.2	3020	15	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_14	10.1962878399095	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAAGAAAAATATACAAA	1443	False	NA	NA	False	AAGAAA	-2	NA	14238383	14340267	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_14238618_14239409_14239465_14294725_14294837_14301035_14301102_14303759_14303851_14307020_14307101_14310752_14310845_14317564_14317704_14319871_14319952_14328000_14328078_14329565_14329721_14332358_14332432_14334762_14334858_14335882_14335981_14338693
transcript_22285.nic	chr13	+	1175	11	ISM	ENSMUSG00000039219.19	ENSMUST00000110533.2	3020	15	-36	10588	-21	0	5prime_fragment	FALSE	canonical	3	58	junction_10	8.57671265695663	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATGATGAAAAAGAGAAAGAA	1407	False	NA	NA	False	NA	NA	NA	14238347	14329679	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_+_14238618_14239409_14239465_14294725_14294837_14301035_14301102_14303759_14303851_14307020_14307101_14310752_14310845_14317564_14317704_14319871_14319952_14328000_14328078_14329565
transcript_22289.known	chr13	-	1340	7	FSM	ENSMUSG00000021302.11	ENSMUST00000222164.2	1340	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	113.396673476586	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACATTAAAAAAAAATTATCT	NA	False	NA	NA	False	NA	NA	NA	14237998	14226541	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_14226716_14226862_14226979_14228494_14229041_14229734_14229806_14232380_14232474_14233903_14234036_14237790
transcript_22293.known	chr13	-	2209	6	FSM	ENSMUSG00000021302.11	ENSMUST00000222747.2	2209	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	113.73372411031	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTCAAAAAAAAAGCTTCAAA	NA	False	NA	NA	False	NA	NA	NA	14237971	14225513	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_14226716_14226862_14226979_14228494_14229041_14229734_14229806_14232380_14232474_14237790
transcript_22304.known	chr13	-	870	5	FSM	ENSMUSG00000021302.11	ENSMUST00000223174.2	870	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	114.48007468551	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTTTCCAGATTAGAGAT	NA	False	NA	NA	False	NA	NA	NA	14237958	14228637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_14229041_14229734_14229806_14232380_14232474_14233903_14234039_14237790
transcript_22305.nic	chr13	-	1317	5	NIC	ENSMUSG00000021302.11	novel	870	5	NA	NA	-23	291	intron_retention	FALSE	canonical	3	19	junction_4	113.102829319164	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGACTCAGTAGCTTCTTT	NA	False	NA	-4	True	AATAAA	-20	NA	14238026	14228262	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_14229041_14229734_14229806_14232380_14232474_14233903_14234043_14237790
transcript_22306.known	chr13	-	652	5	FSM	ENSMUSG00000021302.11	ENSMUST00000221338.2	652	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	126.178445068879	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCGATATTTACTGGAGG	NA	False	NA	NA	False	NA	NA	NA	14237995	14228802	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_14229041_14229734_14229806_14232380_14232474_14235547_14235593_14237790
transcript_22310.known	chr13	-	4244	4	FSM	ENSMUSG00000021302.11	ENSMUST00000170957.3	4244	4	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_3	35.1883819210577	534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAATGTTAATTTGCTCA	NA	False	NA	-10	True	TATAAA	-1	NA	14238073	14225243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_14229041_14229734_14229806_14232380_14232474_14237790
transcript_22313.known	chr13	-	762	3	FSM	ENSMUSG00000021302.11	ENSMUST00000222687.2	762	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	137.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGAAGTTCTCATTCCCC	NA	False	NA	NA	False	AATACA	-34	NA	14237994	14228553	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_14229041_14229734_14229806_14237790
transcript_22322.known	chr13	-	1174	3	FSM	ENSMUSG00000015672.5	ENSMUST00000221699.2	1174	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	520.5	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCAGTTGTTGAAAATGTA	NA	False	NA	NA	False	AATAAA	-24	NA	14787610	14784497	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_14785326_14786007_14786190_14787446
transcript_22323.known	chr13	-	658	3	FSM	ENSMUSG00000015672.5	ENSMUST00000015816.5	658	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	532	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAGTTGTTACTTTTAAA	NA	False	NA	-83	True	TTTAAA	-9	NA	14787600	14784957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_14785326_14786007_14786190_14787492
transcript_2233.known	chr1	-	2590	19	FSM	ENSMUSG00000025968.17	ENSMUST00000168099.9	2590	19	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_18	163.056757519704	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATTTAAAGTTATACTAT	NA	False	NA	NA	False	NA	NA	NA	63215891	63182893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63215586
transcript_22334.known	chr13	+	2035	2	FSM	ENSMUSG00000039182.7	ENSMUST00000178289.3	2035	2	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGCCTGTTTTTCATTGT	NA	False	NA	10	True	ATTAAA	-17	NA	14804738	14812788	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_14804870_14810884
transcript_22336.known	chr13	+	2914	2	FSM	ENSMUSG00000039182.7	ENSMUST00000038690.6	2914	2	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	0	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGCCGCTAGCAAGTGAAA	NA	False	NA	NA	False	ATTAAA	-20	NA	14804832	14813681	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_14804950_14810884
transcript_22338.known	chr13	+	2911	8	FSM	ENSMUSG00000015671.12	ENSMUST00000170836.4	2911	8	0	0	0	0	multi-exon	FALSE	canonical	3	4380	junction_5	234.832723791352	14751	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGCTGAGTGGTGGTTGC	NA	False	NA	7	True	ATTAAA	-18	NA	14787824	14802221	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_14787901_14790596_14790674_14791321_14791455_14793886_14794010_14795309_14795392_14798182_14798257_14799787_14799846_14799933
transcript_22339.nnic	chr13	+	1236	3	Intergenic	novelGene_18	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATCTGGATTCGTGAATG	NA	False	NA	NA	False	AATAAA	-15	NA	15572143	15602234	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr13_+_15572269_15600498_15600619_15601243
transcript_2234.known	chr1	-	2661	19	FSM	ENSMUSG00000025968.17	ENSMUST00000027111.15	2661	19	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_18	130.918608680223	547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATATTAAAGTGTGAAGT	NA	False	NA	NA	False	AATAAA	-31	NA	63215981	63182754	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63215744
transcript_22340.nnic	chr13	+	500	2	Intergenic	novelGene_16	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	3	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAGAGAGAGCAGGCCC	NA	False	NA	NA	False	NA	NA	NA	15572121	15601596	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr13_+_15572269_15601243
transcript_22341.nnic	chr13	+	1138	2	Intergenic	novelGene_17	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	3	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATCTGGATTCGTGAATG	NA	False	NA	NA	False	AATAAA	-15	NA	15572121	15602234	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr13_+_15572269_15601243
transcript_22342.nic	chr13	-	520	3	NIC	ENSMUSG00000055137.8	novel	1351	3	NA	NA	-49	-873	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	4.5	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGGTAGTGAGATGTTTA	NA	False	NA	NA	False	AATAAA	-28	NA	17869403	17858170	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_17858434_17859293_17859371_17869223
transcript_22345.known	chr13	-	1351	3	FSM	ENSMUSG00000055137.8	ENSMUST00000220514.2	1351	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	1.5	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTGGTCTATTGTAATA	NA	False	NA	NA	False	NA	NA	NA	17869354	17857294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_17858438_17859293_17859371_17869223
transcript_22348.known	chr13	+	582	2	FSM	ENSMUSG00000012429.10	ENSMUST00000221480.2	582	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCATATTTGACATTTCC	NA	False	NA	-61	True	NA	NA	NA	17869776	17871841	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_17869944_17871426
transcript_22349.known	chr13	+	2672	2	FSM	ENSMUSG00000012429.10	ENSMUST00000049744.4	2672	2	0	0	0	0	multi-exon	FALSE	canonical	3	374	junction_1	0	766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTACTAAACAGTCTCTTA	NA	False	NA	NA	False	AATAAA	-18	NA	17869997	17873690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_17870406_17871426
transcript_22351.known	chr13	-	2688	5	FSM	ENSMUSG00000008859.9	ENSMUST00000009003.9	2688	5	0	0	0	0	multi-exon	FALSE	canonical	3	817	junction_1	45.9292934846597	407	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTGTTCATTGATGTTT	NA	False	NA	NA	False	AATAAA	-21	NA	18118824	18055155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_18057087_18063091_18063267_18067706_18067916_18071537_18071688_18118601
transcript_22356.known	chr13	-	1382	3	FSM	ENSMUSG00000075054.6	ENSMUST00000222796.2	1382	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	260	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTTGTGCTAAACTGTAA	NA	False	NA	NA	False	ATTAAA	-38	NA	18167688	18163419	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_18164368_18166212_18166335_18167376
transcript_22357.known	chr13	-	8744	3	FSM	ENSMUSG00000075054.6	ENSMUST00000099735.6	8744	3	0	0	0	0	multi-exon	FALSE	canonical	3	467	junction_2	27.5	1583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCGATGTGTTTTTTTTA	NA	False	NA	NA	False	AATAAA	-31	NA	18167934	18155914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_18164368_18166212_18166335_18167765
transcript_22359.known	chr13	-	1024	2	FSM	ENSMUSG00000075054.6	ENSMUST00000222308.2	1024	2	0	0	0	0	multi-exon	FALSE	canonical	3	467	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTTAAATTTTGTTGAG	NA	False	NA	NA	False	AAAAAG	-8	NA	18167913	18165458	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_18166335_18167765
transcript_22366.known	chr13	+	3199	29	FSM	ENSMUSG00000041236.9	ENSMUST00000072961.6	3199	29	0	0	0	0	multi-exon	TRUE	canonical	3	419	junction_25	60.5186237990473	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTATTGTGTTGCAAGC	NA	False	NA	23	True	AATAAA	-22	NA	18901459	19050981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_18901507_18907357_18907397_18923611_18923717_18929431_18929510_18966816_18966892_18975756_18975820_18978496_18978563_18994601_18994722_18995736_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013392_19013509_19014906_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026322_19026451_19027638_19027784_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289
transcript_22378.nic	chr13	+	1217	13	ISM	ENSMUSG00000041236.9	ENSMUST00000072961.6	3199	29	-12	37419	-8	1243	5prime_fragment	FALSE	canonical	3	433	junction_10	46.1629812006692	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAAAGATTTTTATAGTA	NA	False	NA	NA	False	NA	NA	NA	18901447	19013562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_+_18901507_18907357_18907397_18923611_18923717_18929431_18929510_18966816_18966892_18975756_18975820_18978496_18978563_18994601_18994722_18995736_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013392
transcript_22379.nnic	chr13	+	1712	11	NIC	ENSMUSG00000041236.9	novel	3199	29	NA	NA	-2813	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	170.978244230077	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTATTGTGTTGCAAGC	NA	False	NA	23	True	AATAAA	-22	NA	19026219	19050981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_19026451_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289
transcript_2238.known	chr1	-	1775	12	FSM	ENSMUSG00000025968.17	ENSMUST00000185827.7	1775	12	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_11	239.973035675343	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATCTTACAGAAGAATGTA	NA	False	NA	NA	False	AATAAA	-15	NA	63215828	63195841	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63211312_63211417_63215744
transcript_22388.known	chr13	+	3224	21	FSM	ENSMUSG00000021314.14	ENSMUST00000200466.5	3224	21	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_16	10.4957134107215	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGTTACATGGGTTCTTTT	NA	False	NA	10	True	AATAAA	-15	NA	19132520	19335082	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_19132672_19230122_19230204_19261500_19261556_19268374_19268470_19270692_19270789_19278922_19279031_19280176_19280263_19284062_19284139_19284741_19284825_19287041_19287181_19288400_19288530_19297272_19297390_19300406_19300431_19302321_19302346_19304765_19304799_19305444_19305502_19309195_19309319_19321705_19321913_19323341_19323603_19326134_19326237_19333905
transcript_22389.nic	chr13	+	723	5	ISM	ENSMUSG00000021314.14	ENSMUST00000200273.2	1756	9	-109	14825	-62	-14825	5prime_fragment	FALSE	canonical	3	55	junction_2	6.83282518435822	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCCTCTTAGTGAACGCT	NA	False	NA	NA	False	AATAAA	-21	NA	19132458	19270971	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_+_19132672_19230122_19230204_19261500_19261556_19268374_19268470_19270692
transcript_22390.nnic	chr13	+	1816	4	NNC	ENSMUSG00000021314.14	novel	3367	21	NA	NA	17550	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	26.7124606795322	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTTCTTTTTCAAGAGTG	NA	False	NA	19	True	AATAAA	-24	NA	19321508	19335091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_19321913_19323341_19323466_19326134_19326237_19333905
transcript_22393.nnic	chr13	+	1514	4	NNC	ENSMUSG00000021314.14	novel	3760	21	NA	NA	19133	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	29.0631496343164	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTTCTTTTTCAAGAGTG	NA	False	NA	19	True	AATAAA	-24	NA	19323091	19335091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_19323194_19323341_19323466_19326134_19326237_19333905
transcript_22399.nnic	chr13	+	1201	4	NNC	ENSMUSG00000076749.3	novel	924	3	NA	NA	-16232	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	1.69967317119759	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTCTATTTTTGTCAGTC	NA	False	NA	NA	False	AATATA	-15	NA	19382040	19401194	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_19382318_19398272_19398603_19400033_19400079_19400645
transcript_224.known	SIRV3	+	2467	5	FSM	SIRV3A	SIRV301	2467	5	0	0	0	0	multi-exon	FALSE	canonical	3	1234	junction_3	576.603416569829	1770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTAACGTCTCGTAAGAC	NA	False	NA	NA	False	NA	NA	NA	1944	8939	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV3_+_2006_4568_4780_6057_7989_8127_8208_8755
transcript_22402.known	chr13	-	1391	10	FSM	ENSMUSG00000003062.14	ENSMUST00000197565.3	1391	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_9	324.011659598163	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGTGTGTTGTCTGTAT	NA	False	NA	0	True	AATAAA	-19	NA	19579904	19541845	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_19542300_19543147_19543222_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19575142_19575268_19579873
transcript_2241.known	chr1	-	1922	10	FSM	ENSMUSG00000025968.17	ENSMUST00000140612.2	1922	10	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_9	165.933796109647	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GGAAAAGAATAGAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	63215826	63198060	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63215744
transcript_22410.known	chr13	-	1327	9	FSM	ENSMUSG00000003062.14	ENSMUST00000039694.13	1327	9	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_8	60.3857392105123	625	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGTGTGTTGTCTGTAT	NA	False	NA	0	True	AATAAA	-19	NA	19579965	19541845	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_19542300_19543147_19543222_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
transcript_22415.nnic	chr13	-	1329	9	NNC	ENSMUSG00000003062.14	novel	1128	8	NA	NA	-18	-1	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	340.955069437309	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTCATGCCCCTGCTT	NA	False	NA	-4	True	AATAAA	-17	NA	19579983	19549126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_19549516_19549601_19549725_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
transcript_22417.known	chr13	-	1074	8	FSM	ENSMUSG00000003062.14	ENSMUST00000199278.3	1074	8	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_7	61.3454587245254	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCATCCCTGCCTGCGGC	NA	False	NA	NA	False	NA	NA	NA	19579925	19542170	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_19542300_19543147_19543222_19551913_19552010_19554419_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
transcript_22418.known	chr13	-	1030	8	FSM	ENSMUSG00000003062.14	ENSMUST00000222869.2	1030	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	273.451708231442	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTTTTGTTTCAATTCTC	NA	False	NA	NA	False	AATATA	-33	NA	19579952	19542011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_19542300_19543147_19543222_19551913_19552010_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
transcript_22419.known	chr13	-	1128	8	FSM	ENSMUSG00000003062.14	ENSMUST00000200323.3	1128	8	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	267.855352374968	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTCATGCCCCTGCTTT	NA	False	NA	-3	True	AATAAA	-18	NA	19579904	19549125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_19549516_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
transcript_22423.known	chr13	-	2363	3	FSM	ENSMUSG00000002808.8	ENSMUST00000002885.8	2363	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_2	5.5	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGAGCCTATTAAGTCTC	NA	False	NA	NA	False	AATAAA	-34	NA	19803974	19775875	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_19777519_19778616_19778826_19803463
transcript_22426.known	chr13	-	692	2	FSM	ENSMUSG00000002808.8	ENSMUST00000221014.2	692	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCGCCGAACTGAACCCAA	NA	False	NA	NA	False	NA	NA	NA	19803958	19777321	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_19777519_19803463
transcript_22428.known	chr13	+	1764	6	FSM	ENSMUSG00000021319.8	ENSMUST00000002883.7	1764	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	1.72046505340853	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATGTGTTTGTTGTCTGC	NA	False	NA	NA	False	GATAAA	-28	NA	19807344	19816999	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_19808048_19809197_19809279_19809363_19809430_19811275_19811475_19814235_19814300_19816348
transcript_22430.known	chr13	+	5464	22	FSM	ENSMUSG00000041112.18	ENSMUST00000072519.7	5464	22	0	0	0	0	multi-exon	FALSE	canonical	2	20	junction_15	9.13863990039136	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCTGATATTCAATTCCA	NA	False	NA	NA	False	AATAAA	-15	NA	20274788	20792523	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_20274942_20369523_20369675_20392303_20392345_20393308_20393382_20425742_20425794_20435173_20435344_20445726_20445763_20458689_20458790_20464981_20465134_20467081_20467161_20470889_20470941_20472060_20472184_20474531_20474664_20526537_20526643_20557251_20557361_20633639_20633777_20748593_20748758_20756514_20756628_20766388_20766497_20773813_20773897_20784349_20784428_20789268
transcript_22431.nic	chr13	+	2205	7	NIC	ENSMUSG00000041112.18	novel	3748	5	NA	NA	330	-1828	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	14.4308696896618	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGGGAGCTGGTGTTTTG	NA	False	NA	5	True	AATAAA	-15	NA	20657225	20790695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_20657458_20748593_20748758_20756514_20756628_20766388_20766497_20773813_20773897_20784349_20784428_20789268
transcript_22438.nnic	chr13	+	1358	11	NNC	ENSMUSG00000021322.9	novel	2921	21	NA	NA	-74290	-549	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_6	9.14549069213894	23	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGGCATGTGTAGGTTAT	NA	False	NA	NA	False	AATGAA	-43	NA	21120512	21207873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_21120623_21125983_21126076_21163633_21163717_21178800_21178838_21179589_21179665_21184067_21184241_21186824_21186884_21187066_21187127_21189200_21189298_21197281_21197359_21207378
transcript_22439.nnic	chr13	+	1907	11	NNC	ENSMUSG00000021322.9	novel	2921	21	NA	NA	-74290	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_6	9.14549069213894	48	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGGGCATAATTGTG	NA	False	NA	23	True	AATAAA	-16	NA	21120512	21208422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_21120623_21125983_21126076_21163633_21163717_21178800_21178838_21179589_21179665_21184067_21184241_21186824_21186884_21187066_21187127_21189200_21189298_21197281_21197359_21207378
transcript_22454.known	chr13	+	2046	8	FSM	ENSMUSG00000021326.14	ENSMUST00000223065.2	2046	8	0	0	0	0	multi-exon	TRUE	canonical	3	28	junction_5	261.483054432026	507	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACGTTTTGTTTTTGTTAT	1222	False	NA	21	True	AATAAA	-23	NA	21364393	21377033	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_21365085_21366153_21366250_21367901_21368133_21372210_21372234_21374024_21374141_21374266_21374295_21375389_21375417_21376199
transcript_22455.nic	chr13	+	912	6	NIC	ENSMUSG00000004341.9	novel	1340	5	NA	NA	27	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_5	8.58836422143356	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGGACTCTGAGTGATGT	952	False	NA	NA	False	NA	NA	NA	21496321	21503794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_21496515_21497817_21497972_21501154_21501273_21501738_21501839_21503046_21503250_21503650
transcript_22456.known	chr13	+	1340	5	FSM	ENSMUSG00000004341.9	ENSMUST00000004453.9	1340	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	5.71729831301464	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGGACTCTGAGTGATGT	925	False	NA	NA	False	NA	NA	NA	21496294	21503794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_21496515_21497817_21497972_21501154_21501273_21501738_21501839_21503046
transcript_22457.known	chr13	+	4405	4	FSM	ENSMUSG00000036721.15	ENSMUST00000225545.2	4405	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	12.0277457017791	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTTCTCATAATTATGGT	NA	False	NA	8	True	NA	NA	NA	21546989	21556459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_21547043_21547749_21548222_21550784_21550927_21552721
transcript_22458.nnic	chr13	+	2213	4	NIC	ENSMUSG00000036721.15	novel	2270	5	NA	NA	18	0	combination_of_known_splicesites	FALSE	canonical	3	20	junction_1	22.9927524813074	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTCTGTATACTGTCCTT	NA	False	NA	8	True	CATAAA	-13	NA	21547019	21553994	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_21547346_21547749_21548222_21550784_21550927_21552721
transcript_22461.known	chr13	-	2600	6	FSM	ENSMUSG00000021327.20	ENSMUST00000116434.11	2600	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_5	29.6486087363303	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTGGTTCTTACTTGGG	NA	False	NA	2	True	AATAAA	-23	NA	21586925	21571172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_21572877_21578131_21578256_21578686_21578752_21578928_21579077_21580269_21580745_21586841
transcript_22462.nic	chr13	-	2845	6	NIC	ENSMUSG00000021327.20	novel	2561	6	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_5	37.8386046254351	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTGGTTCTTACTTGGG	NA	False	NA	2	True	AATAAA	-23	NA	21586887	21571172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_21572877_21578131_21578256_21578686_21578752_21578928_21579077_21580269_21580748_21586561
transcript_22463.known	chr13	-	2561	6	FSM	ENSMUSG00000021327.20	ENSMUST00000070785.16	2561	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_5	21.2452347598232	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTGGTTCTTACTTGGG	NA	False	NA	2	True	AATAAA	-23	NA	21586883	21571172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_21572877_21578131_21578256_21578686_21578752_21578928_21579077_21580269_21580748_21586841
transcript_22464.known	chr13	-	2101	5	FSM	ENSMUSG00000021327.20	ENSMUST00000223831.2	2101	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	45.4477722226294	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTGGTTCTTACTTGGG	NA	False	NA	2	True	AATAAA	-23	NA	21586901	21571172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_21572877_21578131_21578256_21578686_21578752_21578928_21579077_21586841
transcript_22466.known	chr13	-	4366	6	FSM	ENSMUSG00000022228.15	ENSMUST00000110485.3	4366	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	4.81663783151692	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGCATTATTGAGGATAGT	NA	False	NA	NA	False	AATAAA	-14	NA	21637900	21626349	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_21630000_21631955_21632065_21632336_21632655_21633443_21633504_21633610_21633687_21637747
transcript_22468.known	chr13	-	2642	5	FSM	ENSMUSG00000055313.16	ENSMUST00000239246.2	2642	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	3.20156211871642	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCATTTCCTCACTTTCAG	NA	False	NA	NA	False	ATTAAA	-13	NA	21625214	21606021	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_21607795_21612437_21612549_21617560_21617713_21618520_21618842_21624929
transcript_22471.known	chr13	-	3918	4	FSM	ENSMUSG00000022228.15	ENSMUST00000032820.15	3918	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	8.64098759787715	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGCATTATTGAGGATAGT	NA	False	NA	NA	False	AATAAA	-14	NA	21637830	21626349	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_21630000_21631955_21632065_21633610_21633687_21637747
transcript_22472.known	chr13	-	1463	1	FSM	ENSMUSG00000059395.5	ENSMUST00000068235.6	1463	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAAGTCTCTG	NA	False	NA	NA	False	AAAAAG	-35	NA	21652679	21651216	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_21651200_21652700
transcript_22473.known	chr13	+	2400	3	FSM	ENSMUSG00000054931.8	ENSMUST00000062609.6	2400	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTAGTTAGAGTTTCTAT	NA	False	NA	NA	False	AATAAA	-28	NA	21663076	21669677	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_21663680_21665443_21665601_21668037
transcript_22474.known	chr13	+	1924	1	FSM	ENSMUSG00000078139.4	ENSMUST00000104942.2	1924	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	248	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGTAGAATTTGAAGTAG	NA	False	NA	NA	False	TTTAAA	-27	NA	21679392	21681316	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_21679400_21681300
transcript_22477.known	chr13	-	390	1	FSM	ENSMUSG00000079941.2	ENSMUST00000044043.3	390	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	343	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCTGTGTTATCTTTTCA	NA	False	NA	NA	False	NA	NA	NA	21685588	21685198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_21685200_21685600
transcript_22480.known	chr13	-	8805	6	FSM	ENSMUSG00000063894.16	ENSMUST00000045228.12	8805	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	3.97994974842648	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGGATTTTTTTGTAA	6551	False	NA	-1	True	NA	NA	NA	21715290	21697391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_21705133_21705955_21706080_21706393_21706486_21709307_21709477_21710688_21711192_21715114
transcript_22483.known	chr13	-	728	2	FSM	ENSMUSG00000063894.16	ENSMUST00000110481.3	728	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATGCAGATGAAAATTTT	6598	False	NA	NA	False	AATAAA	-21	NA	21715243	21710592	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_21711192_21715114
transcript_22484.known	chr13	+	393	1	FSM	ENSMUSG00000071516.3	ENSMUST00000070124.5	393	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	46401	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACCAAACATTACGAATCAC	3399	False	NA	-42	True	NA	NA	NA	21900591	21900984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_21900600_21901000
transcript_22485.known	chr13	+	411	1	FSM	ENSMUSG00000101355.2	ENSMUST00000188775.2	411	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	259	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTCGTCTTTCTGTGTTTT	4636	False	NA	NA	False	NA	NA	NA	21901828	21902239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_21901800_21902200
transcript_22486.known	chr13	-	352	1	FSM	ENSMUSG00000080076.5	ENSMUST00000091710.6	352	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	234	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGCCACCACTAGGCCAA	NA	False	NA	NA	False	NA	NA	NA	21905978	21905626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_21905600_21906000
transcript_22487.known	chr13	+	524	1	FSM	ENSMUSG00000114279.2	ENSMUST00000224651.2	524	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTCTAGAGTACATTCC	9021	False	NA	NA	False	NA	NA	NA	21906213	21906737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_21906200_21906700
transcript_22489.known	chr13	+	774	1	FSM	ENSMUSG00000067455.6	ENSMUST00000087714.6	774	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATATGGGGGAGGTGTGAA	8263	False	NA	NA	False	AATAAA	-18	NA	21919233	21920007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_21919200_21920000
transcript_2249.known	chr1	+	802	6	FSM	ENSMUSG00000025967.17	ENSMUST00000027108.13	802	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	1594.84562262308	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTCAGTGCACTTAAATAAA	NA	False	NA	-4	True	TTTAAA	-10	NA	63216303	63218781	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_63216451_63216881_63217036_63217581_63217725_63217990_63218058_63218406_63218533_63218616
transcript_22490.known	chr13	-	312	1	FSM	ENSMUSG00000064288.5	ENSMUST00000102983.2	312	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTGTCTTTTATTTCTG	NA	False	NA	NA	False	NA	NA	NA	21934675	21934363	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_21934400_21934700
transcript_22491.known	chr13	-	393	1	FSM	ENSMUSG00000063021.4	ENSMUST00000074752.4	393	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1727	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCCTTGATAGAAAGCAAC	NA	False	NA	NA	False	NA	NA	NA	21937997	21937604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_21937600_21938000
transcript_22492.known	chr13	-	743	1	FSM	ENSMUSG00000058773.3	ENSMUST00000080511.3	743	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGCTTGCGACAGCAACA	NA	False	NA	NA	False	AAAAAG	-7	NA	21964795	21964052	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_21964100_21964800
transcript_22493.known	chr13	-	411	1	FSM	ENSMUSG00000101972.2	ENSMUST00000189457.2	411	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCCCTACCTGTTAATAAC	NA	False	NA	NA	False	NA	NA	NA	21967540	21967129	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_21967100_21967500
transcript_22497.known	chr13	-	393	1	FSM	ENSMUSG00000069309.3	ENSMUST00000091751.3	393	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12035	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAATTGTTTCCTGATCAT	NA	False	NA	NA	False	NA	NA	NA	21971388	21970995	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_21971000_21971400
transcript_22498.known	chr13	+	469	1	FSM	ENSMUSG00000069308.8	ENSMUST00000102982.2	469	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTCTACCTTACTCGGAC	NA	False	NA	NA	False	AAAACA	-21	NA	21971677	21972146	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_21971700_21972100
transcript_22499.known	chr13	+	621	2	FSM	ENSMUSG00000069308.8	ENSMUST00000110473.3	621	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGTAATACAGTCTCTTC	NA	False	NA	NA	False	AATAAA	-18	NA	21971630	21973383	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_21972062_21973193
transcript_22501.known	chr13	+	480	1	FSM	ENSMUSG00000094248.2	ENSMUST00000091745.6	480	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	66315	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACGTAAATCGATGTCATTT	NA	False	NA	NA	False	TTTAAA	-13	NA	21994634	21995114	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_21994600_21995100
transcript_22502.known	chr13	+	402	1	FSM	ENSMUSG00000069306.6	ENSMUST00000104941.4	402	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATTAATCCTCCAAAGGGT	NA	False	NA	NA	False	ACTAAA	-20	NA	21995915	21996317	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_21995900_21996300
transcript_22503.known	chr13	-	430	1	FSM	ENSMUSG00000069305.4	ENSMUST00000102979.2	430	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	244	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTACGGGCGGGCAAGT	NA	False	NA	NA	False	NA	NA	NA	22016366	22015936	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_22015900_22016400
transcript_22505.known	chr13	-	482	1	FSM	ENSMUSG00000094777.3	ENSMUST00000081342.7	482	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	187926	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGTGTCTTTTAAAGAAC	NA	False	NA	NA	False	AAAAAG	-19	NA	22017677	22017195	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_22017200_22017700
transcript_22506.nnic	chr13	-	1254	3	Intergenic	novelGene_19	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCATCAGACTTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	22065075	22050003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr13_-_22050143_22062750_22062889_22064098
transcript_22507.known	chr13	+	2703	6	FSM	ENSMUSG00000006720.17	ENSMUST00000176511.8	2703	6	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	19.7949488506538	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTTTAAGTTTCTTCTG	NA	False	NA	12	True	ATTAAA	-16	NA	22129263	22144655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_22129370_22129725_22129970_22131172_22131241_22133829_22133957_22134403_22134500_22142593
transcript_22509.known	chr13	+	3198	6	FSM	ENSMUSG00000006720.17	ENSMUST00000102978.8	3198	6	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	13.42236938845	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAGAATCAAATTCAGTTG	NA	False	NA	NA	False	AATAAA	-12	NA	22129281	22144949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_22129589_22129725_22129970_22131172_22131241_22133829_22133957_22134403_22134500_22142593
transcript_22510.known	chr13	-	2155	12	FSM	ENSMUSG00000006179.10	ENSMUST00000006341.4	2155	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	5.45757491629223	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTCTCTCTGCTGTGACT	NA	False	NA	NA	False	NA	NA	NA	22193911	22186342	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_22186981_22187095_22187242_22187315_22187496_22189260_22189403_22190151_22190443_22190916_22190965_22191057_22191136_22191312_22191437_22192499_22192630_22192748_22192849_22193559_22193727_22193800
transcript_22512.known	chr13	-	1159	5	FSM	ENSMUSG00000006179.10	ENSMUST00000150547.3	1159	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	4.63680924774785	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGATTACTGTCCTTTGT	NA	False	NA	NA	False	TATAAA	-8	NA	22190582	22186720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_22186981_22187095_22187242_22187315_22187496_22189260_22189403_22190151
transcript_22514.nnic	chr13	-	1424	4	NIC	ENSMUSG00000006179.10	novel	2155	12	NA	NA	-29	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	6.34209919681348	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTCTCTCTGCTGTGACT	NA	False	NA	NA	False	NA	NA	NA	22190611	22186342	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_22186981_22187095_22187242_22187315_22187496_22190151
transcript_22516.nic	chr13	-	1684	4	NIC	ENSMUSG00000006179.10	novel	2155	12	NA	NA	-73	0	intron_retention	FALSE	canonical	3	7	junction_2	3.55902608401044	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTCTCTCTGCTGTGACT	NA	False	NA	NA	False	NA	NA	NA	22190655	22186342	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_22186981_22187095_22187496_22189260_22189403_22190151
transcript_22518.known	chr13	-	405	1	FSM	ENSMUSG00000069302.6	ENSMUST00000091742.6	405	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34309	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGTTTCAATATCTCCCAA	NA	False	NA	NA	False	NA	NA	NA	22219738	22219333	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_22219300_22219700
transcript_22519.known	chr13	+	476	1	FSM	ENSMUSG00000062727.5	ENSMUST00000110455.4	476	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	390	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTCACCTTCGAGTACG	NA	False	NA	39	True	ACTAAA	-25	NA	22220039	22220515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_22220000_22220500
transcript_22520.known	chr13	-	727	1	FSM	ENSMUSG00000060639.6	ENSMUST00000102977.4	727	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	139	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAATGGAAAACAGCTGGTT	NA	False	NA	NA	False	ATTAAA	-16	NA	22225532	22224805	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_22224800_22225500
transcript_22521.known	chr13	-	485	1	FSM	ENSMUSG00000069301.6	ENSMUST00000091741.6	485	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4502	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGCACTTAGCTTTCTGGA	NA	False	NA	19	True	NA	NA	NA	22227114	22226629	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_22226600_22227100
transcript_22522.known	chr13	+	463	1	FSM	ENSMUSG00000069300.4	ENSMUST00000110452.2	463	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	286	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCATGTCTACTGCTAAC	NA	False	NA	NA	False	TTTAAA	-8	NA	22227383	22227846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_22227400_22227800
transcript_22526.known	chr13	-	1261	5	FSM	ENSMUSG00000046351.12	ENSMUST00000145451.8	1261	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	37.5499667110372	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAAGGCACCGAAGAACTC	9013	False	NA	NA	False	NA	NA	NA	23553371	23541201	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_23541884_23546749_23546825_23546972_23547046_23552289_23552376_23553026
transcript_22527.known	chr13	-	815	5	FSM	ENSMUSG00000046351.12	ENSMUST00000125328.2	815	5	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	23.1124966197942	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACCAGAGAACACATGCAGG	9020	False	NA	NA	False	NA	NA	NA	23553364	23541362	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_23541884_23546749_23546825_23546972_23547046_23552289_23552376_23553304
transcript_22529.known	chr13	-	986	4	FSM	ENSMUSG00000046351.12	ENSMUST00000152557.8	986	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	48.1940521918075	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAGGCACCGAAGAACTCA	9214	False	NA	NA	False	NA	NA	NA	23553170	23541200	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_23541884_23546972_23547046_23552289_23552376_23553026
transcript_22530.known	chr13	-	4844	4	FSM	ENSMUSG00000046351.12	ENSMUST00000050101.9	4844	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	41.5772373621272	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTCTCCACTATACTA	9006	False	NA	0	True	AATAAA	-22	NA	23553378	23537272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_23541884_23546972_23547046_23552289_23552376_23553304
transcript_22532.known	chr13	-	4456	3	FSM	ENSMUSG00000036376.4	ENSMUST00000041782.4	4456	3	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_1	5.5	885	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGGGACTCTGTAAGCCT	NA	False	NA	NA	False	AATAAA	-19	NA	23608036	23602530	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_23606506_23606652_23606853_23607755
transcript_22538.known	chr13	-	623	4	FSM	ENSMUSG00000085024.2	ENSMUST00000141543.2	623	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.816496580927726	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTTTGAAGTATATGTT	7363	False	NA	NA	False	AATAAA	-20	NA	23615192	23612144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_23612223_23612474_23612583_23614398_23614523_23614879
transcript_22541.known	chr13	+	470	1	FSM	ENSMUSG00000060981.8	ENSMUST00000102972.6	470	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGATTGTGCAACGTTAG	4561	False	NA	NA	False	ATTAAA	-27	NA	23715219	23715689	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_23715200_23715700
transcript_22542.known	chr13	+	530	1	FSM	ENSMUSG00000099517.3	ENSMUST00000080859.8	530	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	147	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAATCAGTTTCATTTGT	8933	False	NA	NA	False	AAAAAG	-29	NA	23719591	23720121	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_23719600_23720100
transcript_22543.known	chr13	-	391	1	FSM	ENSMUSG00000069274.4	ENSMUST00000102971.2	391	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGACTTGTAATTGTTCTGT	9696	False	NA	NA	False	CATAAA	-17	NA	23735822	23735431	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_23735400_23735800
transcript_22544.known	chr13	-	704	1	FSM	ENSMUSG00000069272.7	ENSMUST00000102969.6	704	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6646	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGATTGCCCACTAGGAC	8814	False	NA	NA	False	AATAAA	-23	NA	23755394	23754690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_23754700_23755400
transcript_22545.known	chr13	-	461	1	FSM	ENSMUSG00000069268.5	ENSMUST00000105106.2	461	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACACCGAATACTGTTTA	5838	False	NA	NA	False	AAAAAG	-12	NA	23758370	23757909	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_23757900_23758400
transcript_22546.known	chr13	+	572	1	FSM	ENSMUSG00000071478.7	ENSMUST00000090776.7	572	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12008	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAATATTAACCGTGATG	1565	False	NA	NA	False	TTTAAA	-24	NA	23758554	23759126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_23758600_23759100
transcript_22547.known	chr13	+	1138	1	FSM	ENSMUSG00000061482.8	ENSMUST00000102968.3	1138	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	838	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	1913	False	NA	NA	False	NA	NA	NA	23765580	23766718	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_23765600_23766700
transcript_22548.known	chr13	+	1156	2	FSM	ENSMUSG00000018102.6	ENSMUST00000018246.6	1156	2	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	0	273	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACTGGGAGCTGAAGGGT	183	False	NA	NA	False	NA	NA	NA	23868181	23876891	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_23868605_23876158
transcript_22549.known	chr13	-	3572	6	FSM	ENSMUSG00000006611.16	ENSMUST00000091706.14	3572	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.85472369909914	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATTGTATTTCTCTCTA	NA	False	NA	NA	False	AATAAA	-19	NA	23894837	23886016	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_23888410_23889606_23889718_23889843_23890120_23890749_23891050_23892010_23892275_23894609
transcript_22551.known	chr13	+	1560	1	FSM	ENSMUSG00000036181.3	ENSMUST00000040914.3	1560	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTGGACTCTTTCATACC	NA	False	NA	16	True	AATAAA	-21	NA	23922790	23924350	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_23922800_23924400
transcript_22552.known	chr13	-	630	1	FSM	ENSMUSG00000069310.5	ENSMUST00000091752.5	630	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	337	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAGCTAGTAGTTCTTTA	4632	False	NA	67	True	NA	NA	NA	23929585	23928955	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_23929000_23929600
transcript_22553.known	chr13	+	508	1	FSM	ENSMUSG00000075031.5	ENSMUST00000099703.5	508	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTAATATATGACCTAACT	NA	False	NA	NA	False	NA	NA	NA	23930716	23931224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_23930700_23931200
transcript_22554.known	chr13	+	473	1	FSM	ENSMUSG00000061615.3	ENSMUST00000078369.3	473	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7300	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCATAAAATGAGCTGCCAC	400	False	NA	NA	False	AAAACA	-30	NA	23935108	23935581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_23935100_23935600
transcript_22555.known	chr13	+	620	1	FSM	ENSMUSG00000069267.3	ENSMUST00000091703.3	620	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	195	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTTTTCAAAGATTTATC	1541	False	NA	NA	False	NA	NA	NA	23936249	23936869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_23936200_23936900
transcript_22556.known	chr13	+	397	1	FSM	ENSMUSG00000069266.6	ENSMUST00000102965.4	397	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGCTCCCTCACCCTTC	6287	False	NA	NA	False	AAAAAG	-7	NA	23940995	23941392	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_23941000_23941400
transcript_22557.known	chr13	-	539	1	FSM	ENSMUSG00000060093.7	ENSMUST00000102964.4	539	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGTCAAGTTTGCACCAT	NA	False	NA	NA	False	AATAAA	-24	NA	23945213	23944674	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_23944700_23945200
transcript_22558.known	chr13	-	534	1	FSM	ENSMUSG00000069265.3	ENSMUST00000091701.3	534	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	135	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCCTTAAACGAACCTATAT	NA	False	NA	NA	False	AGTAAA	-19	NA	23946369	23945835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_23945800_23946400
transcript_22559.known	chr13	+	741	1	FSM	ENSMUSG00000049539.4	ENSMUST00000055770.4	741	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACCAACATAACTCAAAGAG	NA	False	NA	NA	False	TATAAA	-25	NA	23947648	23948389	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_23947600_23948400
transcript_2256.known	chr1	+	691	6	FSM	ENSMUSG00000025967.17	ENSMUST00000135877.8	691	6	0	0	0	0	multi-exon	FALSE	canonical	1	59	junction_1	1289.84206785172	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTACGTACAGTCCATGGAT	NA	False	NA	-58	True	NA	NA	NA	63216303	63218727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_63216410_63216881_63217036_63217597_63217725_63217990_63218058_63218406_63218533_63218616
transcript_22561.known	chr13	-	1412	11	FSM	ENSMUSG00000021337.9	ENSMUST00000021770.8	1412	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTGTTTGAGTTTGTGTA	3054	False	NA	NA	False	AATAAA	-19	NA	24175197	24137438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_24137968_24143660_24143730_24146106_24146167_24146764_24146811_24150822_24150879_24157942_24158021_24158790_24158848_24162792_24162883_24165462_24165556_24173756_24173828_24174934
transcript_22562.known	chr13	-	749	7	FSM	ENSMUSG00000006715.12	ENSMUST00000176890.8	749	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	603.044060487199	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAGGAATTTGATTCTGAA	NA	False	NA	NA	False	AATGAA	-29	NA	24945423	24936170	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_24936214_24937330_24937442_24937640_24937724_24940582_24940719_24941578_24941657_24944142_24944201_24945183
transcript_22563.known	chr13	-	723	7	FSM	ENSMUSG00000006715.12	ENSMUST00000175689.8	723	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	596.377513735125	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATGCTAGGCCGTGTACAT	NA	False	NA	NA	False	NA	NA	NA	24945459	24936073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_24936214_24937330_24937442_24937640_24937724_24940582_24940719_24941578_24941657_24944142_24944201_24945342
transcript_22568.known	chr13	-	963	7	FSM	ENSMUSG00000006715.12	ENSMUST00000110382.9	963	7	0	0	0	0	multi-exon	FALSE	canonical	3	1483	junction_6	81.6382603658086	15487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCGTGGAGAATTAAGTGT	NA	False	NA	-8	True	AATAAA	-26	NA	24945906	24935827	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_24936214_24937330_24937442_24937640_24937724_24940582_24940719_24941578_24941657_24944142_24944201_24945795
transcript_22569.known	chr13	-	1127	7	FSM	ENSMUSG00000006715.12	ENSMUST00000006898.10	1127	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	603.044060487199	1448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCGTGGAGAATTAAGTGT	NA	False	NA	-8	True	AATAAA	-26	NA	24945844	24935827	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_24936214_24937330_24937442_24937640_24937724_24940582_24940719_24941578_24941657_24944142_24944201_24945569
transcript_22570.known	chr13	-	387	5	FSM	ENSMUSG00000006715.12	ENSMUST00000177253.2	387	5	0	0	0	0	multi-exon	FALSE	canonical	2	74	junction_3	633.203906731473	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCAGCGGAGGAAAGCTCT	NA	False	NA	NA	False	NA	NA	NA	24945880	24937688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_24937724_24940582_24940719_24941578_24941652_24944142_24944201_24945795
transcript_22571.known	chr13	+	5849	5	FSM	ENSMUSG00000019132.12	ENSMUST00000019276.12	5849	5	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	16.0370664399696	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCTTACAGTGGTTCTTC	NA	False	NA	NA	False	NA	NA	NA	24985639	25000180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_24987493_24988764_24988942_24989844_24989968_24993868_24994004_24996619
transcript_22581.known	chr13	-	721	3	FSM	ENSMUSG00000006717.8	ENSMUST00000006900.7	721	3	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_1	3	1197	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAAGGAAGTATTTTCTTT	4817	False	NA	-3	True	AATAAA	-19	NA	25015500	25001930	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_25002175_25004697_25004883_25015208
transcript_22585.nic	chr13	+	1890	6	NIC	ENSMUSG00000035958.4	novel	1957	7	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	322.122585361536	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACGACTTTTTTCTTCAT	NA	False	NA	20	True	AATAAA	-20	NA	25015641	25026135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_25015913_25019998_25020170_25020837_25020930_25022129_25022249_25024370_25024542_25025069
transcript_22589.known	chr13	+	1957	7	FSM	ENSMUSG00000035958.4	ENSMUST00000038039.3	1957	7	0	0	0	0	multi-exon	FALSE	canonical	3	768	junction_5	64.0791611125559	764	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGACTTTTTTCTTCATG	NA	False	NA	21	True	AATAAA	-21	NA	25015661	25026136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_25015913_25015992_25016079_25019998_25020170_25020837_25020930_25022129_25022249_25024370_25024542_25025069
transcript_22590.known	chr13	+	1136	2	FSM	ENSMUSG00000035958.4	ENSMUST00000223804.2	1136	2	0	0	0	0	multi-exon	FALSE	canonical	3	778	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGTAGAGATTTTCTCCT	NA	False	NA	NA	False	NA	NA	NA	25015674	25016890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_25015913_25015992
transcript_22591.known	chr13	+	1771	6	FSM	ENSMUSG00000035958.4	ENSMUST00000225490.2	1771	6	0	0	0	0	multi-exon	FALSE	canonical	3	768	junction_4	61.475198251002	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACGACTTTTTTCTTCAT	NA	False	NA	20	True	AATAAA	-20	NA	25015926	25026135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_25016079_25019998_25020170_25020837_25020930_25022129_25022249_25024370_25024542_25025069
transcript_22592.known	chr13	-	5647	10	FSM	ENSMUSG00000035936.7	ENSMUST00000037615.7	5647	10	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	4.49965705140369	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGAGTGGCTGTGTTGGT	NA	False	NA	1	True	AATAAA	-31	NA	25121644	25091561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_25095750_25096230_25096290_25097726_25097897_25099744_25099904_25102483_25102628_25103661_25103806_25107949_25108067_25109960_25110132_25111523_25111608_25121233
transcript_22594.known	chr13	+	1482	2	FSM	ENSMUSG00000086796.3	ENSMUST00000138447.2	1482	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAACTGTGGAGTGTGTAG	NA	False	NA	NA	False	AATAAA	-16	NA	25089578	25091263	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_25089692_25089894
transcript_22598.known	chr13	+	6634	10	FSM	ENSMUSG00000035910.16	ENSMUST00000069614.7	6634	10	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_2	2.86744175568088	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCACTGAGGTTCAGTTTG	NA	False	NA	NA	False	AATAAA	-20	NA	25240235	25394689	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_25240547_25245217_25245273_25286315_25286393_25286503_25286636_25291573_25291721_25294049_25294105_25303229_25303390_25371658_25371760_25386147_25386451_25389396
transcript_22602.known	chr13	-	2222	4	FSM	ENSMUSG00000048978.15	ENSMUST00000057866.13	2222	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	1.69967317119759	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGTGTGGTGTTTATT	NA	False	NA	-1	True	AATAAA	-17	NA	25454065	25436022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_25437735_25446182_25446383_25452004_25452074_25453824
transcript_22603.known	chr13	+	627	1	FSM	ENSMUSG00000060198.8	ENSMUST00000180940.2	627	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCATGCGTAGTGTAATA	NA	False	NA	NA	False	NA	NA	NA	26676536	26677163	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_26676500_26677200
transcript_22604.known	chr13	+	607	1	FSM	ENSMUSG00000113061.2	ENSMUST00000223428.2	607	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	49152	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATGAAAAAAATTTAGTAATA	NA	False	NA	-4	True	AATAAA	-15	NA	28441510	28442117	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_28441500_28442100
transcript_22608.nnic	chr13	+	909	6	NNC	ENSMUSG00000086363.8	novel	682	4	NA	NA	-36	1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	2.0591260281974	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTATCGAGTTATAGTTT	NA	False	NA	NA	False	ATTAAA	-15	NA	29200239	29212781	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_29200375_29200692_29200863_29207158_29207196_29207613_29207707_29208701_29208799_29212404
transcript_22609.nnic	chr13	+	747	5	NNC	ENSMUSG00000086363.8	novel	682	4	NA	NA	-36	1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	0.707106781186548	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTATCGAGTTATAGTTT	NA	False	NA	NA	False	ATTAAA	-15	NA	29200239	29212781	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_29200375_29200692_29200798_29207158_29207196_29207613_29207707_29212404
transcript_2261.known	chr1	+	681	5	FSM	ENSMUSG00000025967.17	ENSMUST00000188524.2	681	5	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	1438.5358876302	991	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGGCTCTTCATTTTGC	NA	False	NA	30	True	AATAAA	-15	NA	63216288	63218815	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_63216451_63217597_63217725_63217990_63218058_63218406_63218533_63218616
transcript_22612.nic	chr13	+	812	5	NIC	ENSMUSG00000086363.8	novel	682	4	NA	NA	-36	1	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	0.82915619758885	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTATCGAGTTATAGTTT	NA	False	NA	NA	False	ATTAAA	-15	NA	29200239	29212781	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_29200375_29200692_29200863_29207158_29207196_29207613_29207707_29212404
transcript_22615.known	chr13	+	682	4	FSM	ENSMUSG00000086363.8	ENSMUST00000140415.8	682	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	1.24721912892465	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTATCGAGTTATAGTT	NA	False	NA	NA	False	ATTAAA	-14	NA	29200275	29212780	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_29200375_29200692_29200863_29207158_29207196_29212404
transcript_22618.known	chr13	-	2629	16	FSM	ENSMUSG00000006191.18	ENSMUST00000006353.14	2629	16	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_3	17.6728291138937	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTGTTTATTGGACTTT	NA	False	NA	NA	False	AATAAA	-23	NA	30039657	29509283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_29510212_29538612_29538778_29541482_29541567_29627990_29628054_29658511_29658693_29701395_29701542_29736211_29736379_29809603_29809708_29875581_29875703_29893077_29893127_29901703_29901801_29961199_29961285_30030210_30030324_30033921_30034092_30038880_30038925_30039545
transcript_22621.known	chr13	-	2019	12	FSM	ENSMUSG00000006191.18	ENSMUST00000131792.8	2019	12	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_8	15.5292313007885	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACTGA	NA	False	NA	NA	False	NA	NA	NA	30039626	29657850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_29658693_29701395_29701542_29736211_29736379_29809603_29809708_29875581_29875703_29893077_29893127_29901703_29901801_29961199_29961285_30030210_30030324_30033921_30034092_30038880_30038925_30039545
transcript_22625.known	chr13	-	694	6	FSM	ENSMUSG00000006191.18	ENSMUST00000129231.2	694	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	95.4136258612993	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATCTCTAGAGAAGACCTG	NA	False	NA	NA	False	NA	NA	NA	30039648	30020977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_30021054_30022497_30022686_30030210_30030324_30033921_30034092_30038880_30038925_30039545
transcript_22629.nnic	chr13	-	1555	5	NIC	ENSMUSG00000006191.18	novel	694	6	NA	NA	-1	1039	combination_of_known_splicesites	FALSE	canonical	3	6	junction_1	85.65738438687	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTATAGAAATGTGTGC	NA	False	NA	NA	False	AATAAA	-16	NA	30039658	30019938	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_30021054_30030210_30030324_30033921_30034092_30038880_30038925_30039545
transcript_22630.nnic	chr13	-	948	5	NNC	ENSMUSG00000006191.18	novel	3372	17	NA	NA	-1	-2120	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_1	86.9554483629404	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTACAGTGTTCTTGAGTA	NA	False	NA	NA	False	AATAAA	-23	NA	30039658	30023097	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_30023606_30030210_30030324_30033921_30034092_30038880_30038925_30039545
transcript_22631.nic	chr13	-	465	3	ISM	ENSMUSG00000006191.18	ENSMUST00000129231.2	694	6	-10	12806	-1	-12806	5prime_fragment	FALSE	canonical	3	200	junction_2	1	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGGAATTGCTT	NA	False	NA	NA	False	NA	NA	NA	30039658	30033783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_30034092_30038880_30038925_30039545
transcript_22632.known	chr13	-	907	7	FSM	ENSMUSG00000006191.18	ENSMUST00000123641.8	907	7	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_3	19.9638562295854	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTCAGTTAACACTTATTG	NA	False	NA	NA	False	NA	NA	NA	30039640	29892823	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_29893127_29901703_29901801_29961199_29961285_30030210_30030324_30033921_30034092_30038880_30038925_30039545
transcript_22633.known	chr13	-	5097	7	FSM	ENSMUSG00000016477.19	ENSMUST00000102948.11	5097	7	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_5	17.007351351695	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGTGGATGGATTTTCT	NA	False	NA	-3	True	AATAAA	-22	NA	30170046	30090557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_30094149_30095175_30095312_30097386_30097502_30100828_30100988_30102558_30102779_30104096_30104209_30169282
transcript_22635.known	chr13	-	4579	7	FSM	ENSMUSG00000016477.19	ENSMUST00000222730.2	4579	7	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_6	51.741075451607	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGTGGATGGATTTTCT	NA	False	NA	-3	True	AATAAA	-22	NA	30168374	30090557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_30094149_30095175_30095312_30097386_30097502_30100828_30100988_30102558_30102761_30104096_30104209_30168110
transcript_22639.known	chr13	+	2905	13	FSM	ENSMUSG00000038732.16	ENSMUST00000047311.16	2905	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_9	4.03026742978125	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTTTGTATCAAGACG	NA	False	NA	NA	False	AATAAA	-43	NA	30320471	30430700	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_30320746_30378518_30378665_30379692_30379771_30386307_30386404_30403618_30403675_30406356_30406412_30408365_30408550_30410255_30410449_30415946_30416051_30419672_30419738_30421945_30422079_30425146_30425299_30429331
transcript_22640.known	chr13	+	854	2	FSM	ENSMUSG00000038732.16	ENSMUST00000153269.3	854	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTCTGGTTAGTTCAT	NA	False	NA	NA	False	ATTAAA	-22	NA	30320471	30347608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_30320746_30347028
transcript_22641.known	chr13	+	2199	3	FSM	ENSMUSG00000049115.16	ENSMUST00000066412.8	2199	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGATCTTTATTATTTAAA	NA	False	NA	NA	False	AATAAA	-20	NA	30520423	30566850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_30520573_30528919_30529004_30564884
transcript_22642.known	chr13	-	1363	2	FSM	ENSMUSG00000038462.4	ENSMUST00000042834.4	1363	2	0	0	0	0	multi-exon	FALSE	canonical	3	2063	junction_1	0	2505	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTATTATTTTGTTGAA	NA	False	NA	-2	True	ATTAAA	-19	NA	30729345	30724290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_30725325_30729016
transcript_22644.known	chr13	+	1161	8	FSM	ENSMUSG00000069255.14	ENSMUST00000091672.13	1161	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_7	7.4258236676383	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCATGTGCAGTGTGTTCT	NA	False	NA	9	True	AATAAA	-22	NA	30843981	30895214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_30844130_30852787_30852822_30856375_30856459_30880218_30880269_30889608_30889684_30891912_30892085_30892659_30892733_30894688
transcript_22645.known	chr13	+	3015	7	FSM	ENSMUSG00000069255.14	ENSMUST00000095914.7	3015	7	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_6	5.61001089323561	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCATGTGCAGTGTGTTCT	NA	False	NA	9	True	AATAAA	-22	NA	30844083	30895214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_30844130_30852787_30852822_30856375_30856459_30880218_30880269_30889608_30889684_30891912_30892085_30892659
transcript_22646.nnic	chr13	-	572	3	NNC	ENSMUSG00000113515.2	novel	5348	2	NA	NA	5543	-4015	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTCAGGTTAACAAAAACT	456	False	NA	NA	False	NA	NA	NA	30973666	30972430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_30972733_30972951_30973089_30973533
transcript_22647.nnic	chr13	-	372	3	NNC	ENSMUSG00000113515.2	novel	5348	2	NA	NA	5543	-4168	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCAGAGGTGGCACCACC	456	False	NA	NA	False	NA	NA	NA	30973666	30972583	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_30972733_30972998_30973089_30973533
transcript_22648.known	chr13	-	4256	28	FSM	ENSMUSG00000021357.15	ENSMUST00000021785.8	4256	28	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_19	19.2909994862811	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTGTGTTTGTGTCTTCA	NA	False	NA	-2	True	AATAAA	-20	NA	31158037	30997901	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_30999375_31001980_31002041_31004560_31004623_31006614_31006738_31010021_31010078_31040636_31040779_31048813_31048931_31051954_31052022_31055101_31055164_31055824_31055885_31056271_31056353_31059241_31059304_31060713_31060836_31061225_31061384_31061530_31061597_31066231_31066357_31070171_31070298_31084767_31084887_31089635_31089739_31090485_31090568_31090714_31090861_31095152_31095234_31109705_31109831_31111290_31111405_31119477_31119605_31122098_31122276_31124592_31124754_31157978
transcript_22650.known	chr13	-	1787	7	FSM	ENSMUSG00000021357.15	ENSMUST00000222133.2	1787	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	58.7095014078263	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTATGATCTATAATTTG	NA	False	NA	NA	False	NA	NA	NA	31158076	31107638	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_31108624_31109705_31109831_31111290_31111405_31119477_31119605_31122098_31122276_31124592_31124754_31157978
transcript_22651.known	chr13	-	1187	1	FSM	ENSMUSG00000076430.2	ENSMUST00000102943.2	1187	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTGAAACAATTATTGTAT	NA	False	NA	NA	False	AATAAA	-15	NA	31131742	31130555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_31130600_31131700
transcript_22654.known	chr13	-	1713	11	FSM	ENSMUSG00000038372.15	ENSMUST00000041859.9	1713	11	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_5	9.43186089804128	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGTTTGCTGTGTATGTT	NA	False	NA	-4	True	ATTAAA	-26	NA	32522723	32003561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_32003962_32004124_32004194_32101602_32101700_32124466_32124586_32284339_32284468_32310982_32311088_32311889_32312083_32409117_32409228_32411197_32411286_32418335_32418381_32522364
transcript_22659.nnic	chr13	-	1044	5	NNC	ENSMUSG00000038372.15	novel	382	4	NA	NA	-28	-9800	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	37.0978436030991	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTTTTTACTTGACTTTT	NA	False	NA	NA	False	ATTAAA	-26	NA	32522635	32351112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_32351643_32409117_32409228_32411197_32411286_32418335_32418381_32522364
transcript_22663.known	chr13	+	560	2	FSM	ENSMUSG00000083149.3	ENSMUST00000118067.3	560	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTCAGCATAAAATAAATGC	NA	False	NA	NA	False	AAGAAA	-25	NA	32068207	32069207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_32068388_32068827
transcript_22664.known	chr13	+	2633	7	FSM	ENSMUSG00000021400.9	ENSMUST00000021832.7	2633	7	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_2	20.5081284697881	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCAGTTCTTCAGTGTT	NA	False	NA	14	True	AATAAA	-15	NA	32986020	33006592	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_32987028_32989320_32989513_32990741_32990984_33000235_33000466_33004201_33004358_33005021_33005102_33005866
transcript_22667.known	chr13	-	1918	7	FSM	ENSMUSG00000044734.17	ENSMUST00000076352.8	1918	7	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_6	10.85382677011	621	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAGCAATCCAATAAATTG	4869	False	NA	NA	False	AATAAA	-25	NA	33035168	33026074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_33027206_33029291_33029460_33029653_33029797_33031372_33031491_33032601_33032740_33034221_33034398_33035124
transcript_22672.known	chr13	-	975	5	FSM	ENSMUSG00000079049.10	ENSMUST00000221019.2	975	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	0.707106781186548	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTATTTTGTTTTTAC	NA	False	NA	NA	False	NA	NA	NA	33082140	33065637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_33066209_33067859_33067964_33070136_33070255_33072854_33072993_33082096
transcript_22674.known	chr13	+	2193	7	FSM	ENSMUSG00000042842.12	ENSMUST00000110293.9	2193	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	2.08166599946613	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGTCTTCTTCTTTTGAG	NA	False	NA	NA	False	AATAAA	-26	NA	33149191	33163050	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_33149527_33152482_33152658_33155453_33155607_33156229_33156348_33158879_33159023_33161507_33161664_33161937
transcript_22675.known	chr13	+	3397	7	FSM	ENSMUSG00000045827.11	ENSMUST00000006391.5	3397	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	1.73205080756888	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGCCTTCTTCATGGTG	NA	False	NA	NA	False	NA	NA	NA	33188523	33201938	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_33188679_33190515_33190694_33191988_33192127_33192750_33192869_33194669_33194813_33197844_33198001_33199429
transcript_22677.known	chr13	+	3253	7	FSM	ENSMUSG00000021403.4	ENSMUST00000006392.3	3253	7	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_4	6.66874967458085	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAAGCCTGATCTTTATT	NA	False	NA	NA	False	NA	NA	NA	33211398	33225867	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_33211584_33213434_33213613_33216898_33217037_33217509_33217628_33219498_33219642_33221954_33222111_33223532
transcript_22682.known	chr13	-	1327	7	FSM	ENSMUSG00000052180.16	ENSMUST00000172184.2	1327	7	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_6	317.289431486984	643	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTCAGAACCGAGTGTTT	NA	False	NA	-8	True	AATAAA	-18	NA	34089691	34063799	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_34064316_34064604_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34083244_34083420_34089625
transcript_22687.nnic	chr13	-	1254	6	NIC	ENSMUSG00000052180.16	novel	1325	7	NA	NA	-104	0	combination_of_known_splicesites	FALSE	canonical	3	94	junction_5	331.741827329627	636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCAGAACCGAGTGTTTT	NA	False	NA	-7	True	AATAAA	-19	NA	34089257	34063798	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_34064316_34064604_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34089090
transcript_22692.known	chr13	-	1325	7	FSM	ENSMUSG00000052180.16	ENSMUST00000110273.9	1325	7	0	0	0	0	multi-exon	FALSE	canonical	3	772	junction_6	71.5830908028488	1885	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCAGAACCGAGTGTTTT	NA	False	NA	-7	True	AATAAA	-19	NA	34089153	34063798	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_34064316_34064604_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34083244_34083420_34089090
transcript_22695.known	chr13	-	1654	8	FSM	ENSMUSG00000060147.16	ENSMUST00000167163.8	1654	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	180.800939134278	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTGTCTGCCTCACTGG	8372	False	NA	2	True	AATAAA	-28	NA	34120066	34101900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119555_34119778_34119904
transcript_22698.known	chr13	+	1063	8	FSM	ENSMUSG00000046949.17	ENSMUST00000021843.13	1063	8	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	70.4179939898249	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTGTTGCACTGTATTAG	NA	False	NA	13	True	AATACA	-25	NA	34148733	34169629	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_34148784_34150027_34150110_34152172_34152261_34156294_34156460_34163514_34163646_34165407_34165522_34166430_34166533_34169298
transcript_22699.known	chr13	+	772	8	FSM	ENSMUSG00000046949.17	ENSMUST00000223479.2	772	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	84.0738256728294	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCAGTTTTGGTCTTGAT	NA	False	NA	NA	False	TTTAAA	-14	NA	34148988	34169341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_34149036_34150027_34150110_34152172_34152261_34156294_34156460_34163514_34163646_34165407_34165522_34166430_34166533_34169298
transcript_22703.known	chr13	-	1504	8	FSM	ENSMUSG00000060147.16	ENSMUST00000017188.14	1504	8	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_7	171.60728779539	468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAGAACTGTCTGTCTG	8459	False	NA	-7	True	AATAAA	-19	NA	34119979	34101909	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119609_34119778_34119904
transcript_22705.known	chr13	-	1504	8	FSM	ENSMUSG00000060147.16	ENSMUST00000076532.14	1504	8	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_7	178.591998815222	476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTGTCTGCCTCACTGG	NA	False	NA	2	True	AATAAA	-28	NA	34186777	34101900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34180225_34180335_34186652
transcript_22707.known	chr13	+	3842	7	FSM	ENSMUSG00000046949.17	ENSMUST00000058978.9	3842	7	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	21.7995922489899	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTCCTCTCATTTATATC	NA	False	NA	14	True	ATTAAA	-18	NA	34148669	34172426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_34148784_34152172_34152261_34156294_34156460_34163514_34163646_34165407_34165522_34166430_34166533_34169298
transcript_22714.nic	chr13	-	1579	7	NIC	ENSMUSG00000060147.16	novel	1504	8	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_6	145.701464188479	632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAGAACTGTCTGTCTG	8569	False	NA	-7	True	AATAAA	-19	NA	34119869	34101909	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119551
transcript_22717.nic	chr13	-	1392	7	NIC	ENSMUSG00000060147.16	novel	1504	8	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_6	142.613697331872	603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAGAACTGTCTGTCTG	8558	False	NA	-7	True	AATAAA	-19	NA	34119880	34101909	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119749
transcript_22720.known	chr13	+	957	6	FSM	ENSMUSG00000046949.17	ENSMUST00000220844.2	957	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	83.0262609058122	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTGTTGCACTGTATTAG	NA	False	NA	13	True	AATACA	-25	NA	34148669	34169629	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_34148784_34156294_34156460_34163514_34163646_34165407_34165522_34166430_34166533_34169298
transcript_22721.known	chr13	+	777	5	FSM	ENSMUSG00000085457.4	ENSMUST00000181800.2	777	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.433012701892219	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATCTCTTATGCTTTTTCT	NA	False	NA	NA	False	ATTAAA	-12	NA	34120014	34144164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_34120081_34137299_34137525_34138689_34138809_34142583_34142642_34143855
transcript_22728.known	chr13	-	569	3	FSM	ENSMUSG00000060147.16	ENSMUST00000171951.2	569	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	190	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTTGTGCATAAGGCCTTT	7220	False	NA	NA	False	NA	NA	NA	34106042	34102214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_34102426_34102723_34102880_34105840
transcript_22732.known	chr13	-	1547	7	FSM	ENSMUSG00000060147.16	ENSMUST00000043552.17	1547	7	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_6	98.4119742036845	2731	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTGTCTGCCTCACTGG	8257	False	NA	2	True	AATAAA	-28	NA	34120181	34101900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119904
transcript_22733.known	chr13	-	833	6	FSM	ENSMUSG00000060147.16	ENSMUST00000171252.8	833	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	197.68601366814	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTCAAAGTCAGCAAGGTAA	8500	False	NA	NA	False	NA	NA	NA	34119938	34106924	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119551_34119778_34119904
transcript_22734.known	chr13	-	2191	4	FSM	ENSMUSG00000060147.16	ENSMUST00000171985.2	2191	4	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_3	88.7731190545126	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAACAAAAAGGTGTCTT	8477	False	NA	NA	False	AATAAA	-5	NA	34119961	34107606	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_34109413_34114007_34114161_34115454_34115630_34119904
transcript_22739.known	chr13	+	1253	7	FSM	ENSMUSG00000038286.12	ENSMUST00000040656.8	1253	7	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_3	28.0356915377524	860	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGTGTTCCTGTTTGCTA	NA	False	NA	15	True	AATAAA	-17	NA	34221579	34258057	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_34221753_34228406_34228511_34230768_34230936_34234263_34234418_34244416_34244549_34247892_34248017_34257658
transcript_22743.nic	chr13	+	1126	6	NIC	ENSMUSG00000038286.12	novel	1253	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_5	69.9828550432176	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTAGTGTTCCTGTTTG	NA	False	NA	12	True	AATAAA	-14	NA	34221579	34258054	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_34221753_34228406_34228511_34230768_34230936_34234263_34234418_34244416_34244549_34257658
transcript_22746.nic	chr13	+	1086	6	NIC	ENSMUSG00000038286.12	novel	1253	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_2	72.3972375163583	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGTGTTCCTGTTTGCTA	NA	False	NA	15	True	AATAAA	-17	NA	34221579	34258057	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_34221753_34228406_34228511_34234263_34234418_34244416_34244549_34247892_34248017_34257658
transcript_22748.known	chr13	+	2009	5	FSM	ENSMUSG00000038286.12	ENSMUST00000221124.2	2009	5	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_3	18.4932420089069	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATGAGACAGCTCTCCAT	NA	False	NA	NA	False	AATAAA	-15	NA	34221621	34245869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_34221753_34228406_34228511_34230768_34230936_34234263_34234418_34244416
transcript_22755.nic	chr13	+	455	2	ISM	ENSMUSG00000038286.12	ENSMUST00000221124.2	2009	5	-42	17181	0	-5618	5prime_fragment	FALSE	canonical	3	167	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATTTCTTACTCTTTTAC	NA	False	NA	NA	False	AGTAAA	-16	NA	34221579	34228688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_+_34221753_34228406
transcript_22756.known	chr13	+	761	5	FSM	ENSMUSG00000038286.12	ENSMUST00000222658.2	761	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	101.124922744099	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTCTTCTTACAGCTTC	NA	False	NA	NA	False	NA	NA	NA	34221614	34248016	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_34221862_34228406_34228511_34234263_34234418_34244416_34244549_34247892
transcript_22757.known	chr13	-	1610	4	FSM	ENSMUSG00000058672.8	ENSMUST00000056427.10	1610	4	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_2	19.2006944318862	559	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCCTTTTCTCTTCAACA	NA	False	NA	NA	False	AATAAA	-22	NA	34261990	34258256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_34259512_34260160_34260272_34260531_34260641_34261855
transcript_22759.known	chr13	-	2182	4	FSM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	0	0	0	0	multi-exon	FALSE	canonical	3	472	junction_3	10.4986771653491	1273	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTACACACGCTCAGCAA	NA	False	NA	NA	False	NA	NA	NA	34314337	34310730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_34312515_34312854_34312966_34313228_34313338_34314159
transcript_22764.known	chr13	+	474	2	FSM	ENSMUSG00000071451.11	ENSMUST00000124996.8	474	2	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	0	2237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGCTTCATTTTACTTT	NA	False	NA	17	True	AATAAA	-17	NA	34346946	34362151	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_34347233_34361963
transcript_22765.known	chr13	+	555	3	FSM	ENSMUSG00000071451.11	ENSMUST00000147632.3	555	3	0	0	0	0	multi-exon	FALSE	canonical	3	1035	junction_1	31.5	11158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCATTTTACTTTGTTTT	NA	False	NA	22	True	AATAAA	-22	NA	34346946	34362156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_34347233_34350043_34350120_34361963
transcript_22767.known	chr13	-	2684	5	FSM	ENSMUSG00000021411.17	ENSMUST00000053459.15	2684	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	2.06155281280883	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGATGTTTGTGTAAAAAA	NA	False	NA	NA	False	AATAAA	-27	NA	34837469	34811816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_34812872_34814333_34814446_34822147_34822266_34822989_34823082_34836162
transcript_22768.known	chr13	+	520	6	FSM	ENSMUSG00000021413.10	ENSMUST00000223228.2	520	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	30.4341912986036	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCGTCTACTGGCATTTTC	NA	False	NA	14	True	AATAAA	-19	NA	35085631	35090047	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_35085657_35085980_35086115_35086612_35086659_35087169_35087257_35088026_35088073_35089865
transcript_22769.known	chr13	+	419	4	FSM	ENSMUSG00000021413.10	ENSMUST00000221156.2	419	4	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_2	32.0312347560939	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAACTACTTAATAGGAAG	NA	False	NA	-33	True	NA	NA	NA	35087091	35090000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_35087257_35087512_35087586_35088026_35088073_35089865
transcript_22771.known	chr13	+	1727	2	FSM	ENSMUSG00000021413.10	ENSMUST00000221639.2	1727	2	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_1	0	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAGTGAATATAAAGAT	NA	False	NA	NA	False	TTTAAA	-3	NA	35059486	35068749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_35059678_35067213
transcript_22772.known	chr13	+	7844	15	FSM	ENSMUSG00000021413.10	ENSMUST00000077853.5	7844	15	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_7	21.2239035437088	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCGTCTACTGGCATTTTC	NA	False	NA	14	True	AATAAA	-19	NA	35059284	35090047	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_35059678_35067213_35068411_35070652_35070827_35072106_35072263_35073494_35073577_35074477_35074689_35076072_35076147_35077743_35077835_35078417_35078566_35079301_35079440_35079949_35080104_35083091_35083207_35083813_35083966_35084346_35084434_35085375
transcript_22776.known	chr13	-	1347	9	FSM	ENSMUSG00000021416.12	ENSMUST00000021853.12	1347	9	0	0	0	0	multi-exon	TRUE	canonical	2	6	junction_1	1.69096865730859	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATACTGTAAAATTAATACT	NA	False	NA	NA	False	NA	NA	NA	35147793	35130596	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_35131074_35132054_35132199_35132727_35132818_35136963_35137085_35138064_35138165_35140843_35140914_35143856_35144046_35144383_35144483_35147736
transcript_22786.known	chr13	-	1746	10	FSM	ENSMUSG00000021417.16	ENSMUST00000021854.14	1746	10	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_9	45.5959170795038	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTTAAGAATTCATGTTG	NA	False	NA	NA	False	AATAAA	-16	NA	35178264	35161731	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177214_35177812
transcript_22787.known	chr13	-	1395	10	FSM	ENSMUSG00000021417.16	ENSMUST00000110251.9	1395	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_9	51.0630208542878	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATCAAGCCTTAAGAAT	NA	False	NA	NA	False	AATAAA	-8	NA	35178115	35161739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177204_35177996
transcript_22788.nic	chr13	-	1703	10	NIC	ENSMUSG00000021417.16	novel	1746	10	NA	NA	5	0	combination_of_known_junctions	TRUE	canonical	2	11	junction_9	56.5674512702303	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAGAATTCATGTTGG	NA	False	NA	NA	False	AATAAA	-17	NA	35178122	35161730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177312_35177812
transcript_22789.nic	chr13	-	1554	10	NIC	ENSMUSG00000021417.16	novel	1426	10	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_9	51.9781530555072	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAGAATTCATGTTGG	NA	False	NA	NA	False	AATAAA	-17	NA	35178157	35161730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177312_35177996
transcript_22799.known	chr13	+	982	5	FSM	ENSMUSG00000085962.9	ENSMUST00000130003.8	982	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	0.433012701892219	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGCAGGGGATCTGATT	NA	False	NA	NA	False	AATAAA	-15	NA	35147964	35174435	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_35148067_35148606_35148820_35151209_35151318_35167115_35167191_35173951
transcript_22805.nnic	chr13	+	3295	8	NNC	ENSMUSG00000059288.15	novel	3470	10	NA	NA	-2890	0	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_1	86.1488981534948	73	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGGAGTGTTTCTCTGCG	NA	False	NA	18	True	AATAAA	-19	NA	35922405	36058046	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_35922622_35974083_35974159_35999891_36000559_36040645_36040903_36042058_36042232_36047181_36047393_36055560_36055705_36056494
transcript_22806.nnic	chr13	+	3213	7	NNC	ENSMUSG00000059288.15	novel	3470	10	NA	NA	-2883	0	at_least_one_novel_splicesite	FALSE	canonical	3	95	junction_1	63.2334739060114	75	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGGAGTGTTTCTCTGCG	NA	False	NA	18	True	AATAAA	-19	NA	35922412	36058046	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_35922622_35999891_36000559_36040645_36040903_36042058_36042232_36047181_36047393_36055560_36055705_36056494
transcript_22808.nnic	chr13	+	2468	6	NNC	ENSMUSG00000059288.15	novel	3470	10	NA	NA	90689	0	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	80.650852444348	94	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGGAGTGTTTCTCTGCG	NA	False	NA	18	True	AATAAA	-19	NA	36037483	36058046	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_36037615_36040645_36040903_36042058_36042232_36047181_36047393_36055560_36055705_36056494
transcript_2281.known	chr1	+	652	2	FSM	ENSMUSG00000084799.8	ENSMUST00000186436.2	652	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTACGATATTATTGTTT	NA	False	NA	NA	False	AAGAAA	-17	NA	63152236	63154119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_63152379_63153609
transcript_22812.nnic	chr13	-	1105	8	NNC	ENSMUSG00000021418.16	novel	4380	8	NA	NA	245	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_7	192.402639041683	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAGTCACACCTTGCTTGT	NA	False	NA	-14	True	CATAAA	-15	NA	36090066	36080694	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_36080909_36082547_36082683_36082797_36082997_36085288_36085415_36085995_36086092_36087670_36087740_36088401_36088547_36089945
transcript_22814.known	chr13	-	4380	8	FSM	ENSMUSG00000021418.16	ENSMUST00000171686.9	4380	8	0	0	0	0	multi-exon	FALSE	canonical	3	464	junction_5	45.6195446836425	1577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCATTTTGTGTATTGTC	NA	False	NA	NA	False	NA	NA	NA	36090342	36077454	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_36080909_36082547_36082683_36082797_36082997_36085288_36085415_36085995_36086092_36087670_36087740_36088401_36088547_36090186
transcript_22815.known	chr13	-	1053	7	FSM	ENSMUSG00000021418.16	ENSMUST00000174230.2	1053	7	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_5	206.52017657685	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAGAGTCACACCTTGCT	NA	False	NA	-17	True	CATAAA	-12	NA	36090327	36080697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_36080909_36082547_36082683_36082797_36082997_36085288_36085415_36085995_36086092_36088401_36088547_36090186
transcript_22816.known	chr13	-	3269	6	FSM	ENSMUSG00000021418.16	ENSMUST00000174852.2	3269	6	0	0	0	0	multi-exon	FALSE	canonical	3	532	junction_3	23.0338880782207	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAGTCACACCTTGCTTGT	NA	False	NA	-14	True	CATAAA	-15	NA	36090311	36080694	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_36080909_36082547_36082683_36082797_36082997_36085288_36087740_36088401_36088547_36090186
transcript_22817.known	chr13	+	2361	2	FSM	ENSMUSG00000050423.12	ENSMUST00000132661.2	2361	2	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCGGTCCCTTGCCATAG	NA	False	NA	NA	False	AATAAA	-26	NA	36151835	36154371	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_36151966_36152140
transcript_22818.known	chr13	-	2086	3	FSM	ENSMUSG00000046573.8	ENSMUST00000053265.8	2086	3	0	0	0	0	multi-exon	FALSE	canonical	3	325	junction_1	9.5	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCACCCAGCTAAACTGGAC	NA	False	NA	NA	False	NA	NA	NA	36301509	36162377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_36163891_36276788_36276910_36301057
transcript_2282.known	chr1	+	1939	6	FSM	ENSMUSG00000025967.17	ENSMUST00000129339.8	1939	6	0	0	0	0	multi-exon	FALSE	canonical	3	2982	junction_1	199.182730175083	22020	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCACAGCAGTTTCAGCTT	NA	False	NA	NA	False	NA	NA	NA	63215983	63219645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_63216451_63216912_63217036_63217597_63217725_63217990_63218058_63218406_63218533_63218616
transcript_22821.known	chr13	+	2125	7	FSM	ENSMUSG00000021420.14	ENSMUST00000021857.13	2125	7	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_1	25.2300526268883	573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACATAGCATTTGTCTTT	NA	False	NA	9	True	AATAAA	-20	NA	36301394	36721567	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_36301989_36388491_36389125_36416104_36416265_36430345_36430478_36525919_36526081_36594061_36594214_36721274
transcript_22824.known	chr13	+	1750	8	FSM	ENSMUSG00000021420.14	ENSMUST00000224611.2	1750	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	107.637524751798	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGCATTTGTCTTTTATT	NA	False	NA	13	True	AATAAA	-24	NA	36301857	36721571	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_36301989_36332343_36332428_36388491_36389125_36416104_36416265_36430345_36430478_36525919_36526081_36594061_36594214_36721274
transcript_22826.nic	chr13	+	1723	7	NIC	ENSMUSG00000021420.14	novel	2125	7	NA	NA	-52	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	85.194711625129	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACATAGCATTTGTCTTT	NA	False	NA	9	True	AATAAA	-20	NA	36301584	36721567	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_36301777_36388491_36389125_36416104_36416265_36430345_36430478_36525919_36526081_36594061_36594214_36721274
transcript_2283.known	chr1	+	386	3	FSM	ENSMUSG00000025967.17	ENSMUST00000148553.2	386	3	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	1495	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCAGATGCTAAGGATGAT	NA	False	NA	NA	False	NA	NA	NA	63216289	63217668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_63216451_63216881_63217036_63217597
transcript_22832.known	chr13	+	962	6	FSM	ENSMUSG00000021420.14	ENSMUST00000099582.4	962	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	98.7886633172046	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGAACTGGAGTGTCTG	NA	False	NA	-75	True	NA	NA	NA	36301840	36721483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_36301989_36416104_36416265_36430345_36430478_36525919_36526081_36594061_36594214_36721274
transcript_22842.known	chr13	+	616	4	FSM	ENSMUSG00000021420.14	ENSMUST00000225525.2	616	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	115.50565161738	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAGTGAGAGTGAACTGCC	NA	False	NA	NA	False	AATAAA	-16	NA	36301854	36487012	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_36301989_36416104_36416265_36430345_36430478_36486822
transcript_22844.known	chr13	-	1443	3	FSM	ENSMUSG00000039114.17	ENSMUST00000223611.2	1443	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTATAGAGAAGTATAAAATA	NA	False	NA	NA	False	ATTAAA	-23	NA	36915720	36909635	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_36910831_36914080_36914226_36915617
transcript_22846.nnic	chr13	-	630	4	NNC	ENSMUSG00000100760.2	novel	526	3	NA	NA	1822	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	1.24721912892465	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGCTGAGTCTGTTTACTG	NA	False	NA	NA	False	NA	NA	NA	37617303	37605808	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_37606132_37613995_37614157_37615394_37615464_37617226
transcript_22850.known	chr13	-	399	2	FSM	ENSMUSG00000100760.2	ENSMUST00000189445.2	399	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGCTGAGTCTGTTTACTG	NA	False	NA	NA	False	NA	NA	NA	37608255	37605808	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_37606132_37608179
transcript_22851.nnic	chr13	-	741	2	NIC	ENSMUSG00000100760.2	novel	526	3	NA	NA	-264	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGCTGAGTCTGTTTACTG	NA	False	NA	NA	False	NA	NA	NA	37619389	37605808	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_37606132_37618971
transcript_22852.nnic	chr13	+	619	3	Antisense	novelGene_ENSMUSG00000114791.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	1.5	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTGCTTCTCTCTTGCCT	NA	False	NA	NA	False	AATAAA	-25	NA	37620483	37623853	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr13_+_37620612_37621996_37622153_37623518
transcript_22857.known	chr13	+	756	2	FSM	ENSMUSG00000114665.2	ENSMUST00000225065.2	756	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGCTGTTCCTGTTCCTCT	NA	False	NA	NA	False	NA	NA	NA	37726930	37732274	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_37727169_37731756
transcript_2286.nnic	chr1	+	974	4	NNC	ENSMUSG00000086730.3	novel	462	2	NA	NA	-19	51279	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_3	11.2644968324772	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGAGCTTGCTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	63239452	63298405	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_63239834_63246673_63246774_63297675_63297792_63298028
transcript_22860.known	chr13	-	9333	8	FSM	ENSMUSG00000021427.11	ENSMUST00000021864.8	9333	8	0	0	0	0	multi-exon	FALSE	canonical	3	888	junction_3	64.8026832399866	901	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGGCCTCCAAAGATGAG	5846	False	NA	NA	False	AATAAA	-18	NA	38178193	38155376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
transcript_22866.known	chr13	-	1825	10	FSM	ENSMUSG00000021427.11	ENSMUST00000225246.2	1825	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	464.657367461017	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTACAGACACATCTGAAC	5906	False	NA	NA	False	NA	NA	NA	38178133	38150580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_38151460_38163718_38163783_38167070_38167086_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
transcript_22868.known	chr13	+	2738	17	FSM	ENSMUSG00000021428.10	ENSMUST00000021866.10	2738	17	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_3	18.4889113727661	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGTTTGCATTCTTGCTA	4488	False	NA	18	True	AATAAA	-19	NA	38220970	38245409	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_38221508_38224048_38224251_38227026_38227118_38227884_38227955_38229248_38229292_38231220_38231314_38232855_38232969_38233051_38233133_38234199_38234287_38234783_38234922_38236244_38236349_38236853_38236961_38240137_38240204_38241112_38241233_38242663_38242718_38243915_38244069_38244730
transcript_22870.nic	chr13	+	1857	4	ISM	ENSMUSG00000021428.10	ENSMUST00000226006.2	2307	5	-75	2454	-38	77	5prime_fragment	FALSE	canonical	3	187	junction_3	20.3960780543711	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTTTTGTCTCTGAATG	4700	False	NA	NA	False	NA	NA	NA	38221182	38229123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_+_38221508_38224048_38224251_38227026_38227118_38227884
transcript_22884.known	chr13	+	1785	9	FSM	ENSMUSG00000021431.16	ENSMUST00000091641.13	1785	9	0	0	0	0	multi-exon	FALSE	canonical	1	67	junction_6	66.7082032062025	526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGAAGTGCTGTGTG	NA	False	NA	25	True	ATTAAA	-26	NA	38388920	38411641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042_38395118_38400300_38400490_38401349_38401472_38404663_38404753_38405210_38405370_38410849
transcript_2289.nnic	chr1	+	891	3	NNC	ENSMUSG00000086730.3	novel	462	2	NA	NA	-24	63376	intron_retention	FALSE	canonical	0	0	junction_2	14	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGCTGCTTGACTCAGTT	NA	False	NA	NA	False	ATTAAA	-19	NA	63239447	63310502	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_63239834_63246673_63246774_63310097
transcript_22891.known	chr13	+	871	6	FSM	ENSMUSG00000021431.16	ENSMUST00000223557.2	871	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	91.8267934755429	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGACGTTAGAATGATCT	NA	False	NA	NA	False	AATACA	-40	NA	38388913	38399406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042_38395118_38398580_38398644_38399039
transcript_22893.nic	chr13	+	1492	5	ISM	ENSMUSG00000021431.16	ENSMUST00000223557.2	871	6	-54	-171	-54	171	intron_retention	FALSE	canonical	3	102	junction_4	60.6356949329353	486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGT	NA	False	NA	NA	False	NA	NA	NA	38388859	38399577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042_38395118_38398580
transcript_22895.known	chr13	-	2843	10	FSM	ENSMUSG00000038991.18	ENSMUST00000035988.16	2843	10	0	0	0	0	multi-exon	FALSE	canonical	3	973	junction_6	103.236992125933	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTGAGTCTTACTTTCTA	NA	False	NA	NA	False	TTTAAA	-17	NA	38712466	38684054	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_38685685_38687406_38687537_38688699_38688783_38690924_38691066_38691869_38691957_38694102_38694219_38697043_38697141_38702958_38703065_38707304_38707455_38712163
transcript_22898.known	chr13	-	1020	5	FSM	ENSMUSG00000038982.11	ENSMUST00000224115.2	1020	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	32.8357655613509	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAGCTGTCTAGTGATCT	NA	False	NA	NA	False	ACTAAA	-10	NA	38819068	38776817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_38777409_38796618_38796678_38803065_38803196_38814968_38815052_38818911
transcript_2290.nnic	chr1	+	621	3	Fusion	ENSMUSG00000027520.17_ENSMUSG00000086730.3	novel	462	2	NA	NA	-82	-19850	multi-exon	FALSE	canonical	0	0	junction_2	14	16	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAAGGTGAAAATTAGTTG	NA	False	NA	NA	False	NA	NA	NA	63239389	63314331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr1_+_63239834_63246673_63246774_63314254
transcript_22901.known	chr13	-	5634	5	FSM	ENSMUSG00000038982.11	ENSMUST00000035899.8	5634	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	8.98262211161084	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGAATGGGGATGTGTG	NA	False	NA	NA	False	AATAAA	-26	NA	38819085	38782816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_38788005_38796618_38796678_38803065_38803196_38814968_38815052_38818911
transcript_22904.known	chr13	-	612	5	FSM	ENSMUSG00000038982.11	ENSMUST00000224902.2	612	5	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	32.8357655613509	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTCCTTATTTTTTTT	NA	False	NA	NA	False	AATATA	-19	NA	38819037	38795809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_38796024_38796618_38796678_38803065_38803196_38814968_38815052_38818911
transcript_22906.nnic	chr13	-	1723	4	NIC	ENSMUSG00000038982.11	novel	5634	5	NA	NA	-8	-3860	combination_of_known_splicesites	FALSE	canonical	2	3	junction_1	34.6538437823121	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTATTTGAGATTTCTTT	NA	False	NA	-23	True	ATTAAA	-20	NA	38819093	38786676	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_38788005_38803065_38803196_38814968_38815052_38818911
transcript_22907.nic	chr13	-	844	4	ISM	ENSMUSG00000038982.11	ENSMUST00000224902.2	612	5	-56	419	-8	-419	5prime_fragment	FALSE	canonical	3	63	junction_2	8.9938250421547	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGTGGCACTGTCATCTT	NA	False	NA	NA	False	AAAAAG	-38	NA	38819093	38796228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_38796678_38803065_38803196_38814968_38815052_38818911
transcript_22921.known	chr13	-	2553	4	FSM	ENSMUSG00000001707.9	ENSMUST00000001757.9	2553	4	0	0	0	0	multi-exon	FALSE	canonical	3	1400	junction_3	42.6640624205223	6357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGGTTGGTGACAACCTATC	NA	False	NA	NA	False	AATAAA	-21	NA	38843034	38828182	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_38830287_38838971_38839068_38840015_38840217_38842882
transcript_22922.known	chr13	-	533	2	FSM	ENSMUSG00000001707.9	ENSMUST00000224487.2	533	2	0	0	0	0	multi-exon	FALSE	canonical	3	1400	junction_1	0	608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATTAACAAGAGCAT	NA	False	NA	NA	False	AATAAA	-20	NA	38842986	38839787	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_38840217_38842882
transcript_22929.nnic	chr13	+	394	3	NNC	ENSMUSG00000114813.2	novel	734	4	NA	NA	-58436	-88	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0.5	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTCTCACACTGAGAATAG	NA	False	NA	NA	False	AATAAA	-22	NA	38849181	38911110	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_38849334_38877504_38877589_38910952
transcript_22934.known	chr13	-	2216	10	FSM	ENSMUSG00000021432.16	ENSMUST00000225432.2	2216	10	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	14.9004929904357	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATCAAGGTGGGAAGAAC	NA	False	NA	NA	False	AATAAA	-15	NA	39144800	39116115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_39116893_39118713_39118784_39121217_39121330_39121722_39121816_39123850_39123949_39127034_39127143_39128475_39128631_39138084_39138207_39139624_39139913_39144407
transcript_22942.nic	chr13	-	1804	9	NIC	ENSMUSG00000021432.16	novel	2216	10	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_6	8.40293847412915	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATCAAGGTGGGAAGAAC	NA	False	NA	NA	False	AATAAA	-15	NA	39144543	39116115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_39116893_39118713_39118784_39121217_39121330_39121722_39121816_39123850_39123949_39127034_39127143_39138084_39138207_39139624_39139913_39144407
transcript_22945.known	chr13	-	802	9	FSM	ENSMUSG00000021432.16	ENSMUST00000224645.2	802	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_7	12.4473892845046	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTCTGGCTTGTTAGTTGT	NA	False	NA	NA	False	NA	NA	NA	39144483	39116885	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_39116893_39118713_39118784_39121217_39121330_39121722_39121816_39123850_39123949_39127034_39127143_39138084_39138207_39139796_39139913_39144407
transcript_22947.nic	chr13	-	1639	9	NIC	ENSMUSG00000021432.16	novel	1701	10	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_6	8.40293847412915	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGTTTTAATAGAATTTG	NA	False	NA	NA	False	AATAAA	-24	NA	39144543	39116280	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_39116893_39118713_39118784_39121217_39121330_39121722_39121816_39123850_39123949_39127034_39127143_39138084_39138207_39139624_39139913_39144407
transcript_22953.nnic	chr13	-	1524	8	NIC	ENSMUSG00000021432.16	novel	802	9	NA	NA	-30	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_5	20.8649691774397	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATCAAGGTGGGAAGAAC	NA	False	NA	NA	False	AATAAA	-15	NA	39144543	39116115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_39116893_39118713_39118784_39121217_39121330_39121722_39121816_39123850_39123949_39138084_39138207_39139796_39139913_39144407
transcript_22957.known	chr13	-	1252	6	FSM	ENSMUSG00000021432.16	ENSMUST00000223619.2	1252	6	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	15.1973681932103	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGTATATTACACATCCC	NA	False	NA	NA	False	NA	NA	NA	39144456	39123418	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_39123949_39127034_39127143_39128475_39128631_39138084_39138207_39139624_39139913_39144407
transcript_22964.nnic	chr13	-	885	5	NNC	ENSMUSG00000021432.16	novel	1321	2	NA	NA	-30	1933	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	19.6659604392971	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCAAATAAGTCTTTCAATA	NA	False	NA	NA	False	ATTAAA	-18	NA	39144543	39126663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_39126895_39127034_39127143_39138084_39138207_39139624_39139913_39144407
transcript_22966.known	chr13	-	1778	10	FSM	ENSMUSG00000021432.16	ENSMUST00000167513.3	1778	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_9	18.3127830951868	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGTTTTAATAGAATTTG	NA	False	NA	NA	False	AATAAA	-24	NA	39144505	39116280	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_39116893_39118713_39118784_39121217_39121330_39121722_39121816_39123850_39123949_39127034_39127143_39128475_39128631_39138084_39138207_39139624_39139913_39144385
transcript_22967.known	chr13	-	1321	2	FSM	ENSMUSG00000021432.16	ENSMUST00000224854.2	1321	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGAAAAGGAAAGGGA	NA	False	NA	NA	False	NA	NA	NA	39144508	39138692	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_39139913_39144407
transcript_22968.nnic	chr13	-	759	4	Antisense	novelGene_ENSMUSG00000055732.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	1.24721912892465	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTTTGTCGCTGATTG	NA	False	NA	NA	False	AATAAA	-17	NA	40868311	40858113	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr13_-_40858491_40864617_40864722_40867304_40867393_40868121
transcript_22971.nnic	chr13	-	634	3	Antisense	novelGene_ENSMUSG00000055732.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	0.5	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTTTGTCGCTGATTG	NA	False	NA	NA	False	AATAAA	-17	NA	40868274	40858113	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr13_-_40858491_40864617_40864722_40868121
transcript_22974.known	chr13	-	1958	7	FSM	ENSMUSG00000021359.17	ENSMUST00000224665.2	1958	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	3.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAAAGTATATGAGCTT	5228	False	NA	NA	False	ATTAAA	-32	NA	40887451	40870207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_40870880_40872667_40872810_40874744_40874864_40876566_40876799_40878604_40878657_40881817_40882253_40887145
transcript_22976.known	chr13	+	2340	1	FSM	ENSMUSG00000114936.2	ENSMUST00000224038.2	2340	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAAGTTTTGGAGTTCC	NA	False	NA	NA	False	AATAAA	-17	NA	40876585	40878925	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_40876600_40878900
transcript_22977.known	chr13	-	366	2	FSM	ENSMUSG00000114640.2	ENSMUST00000225467.2	366	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTACTTATATATAATAAAT	NA	False	NA	NA	False	NA	NA	NA	40908470	40907535	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_40907754_40908322
transcript_22985.nnic	chr13	+	736	4	NNC	ENSMUSG00000021360.17	novel	4352	3	NA	NA	33	-73070	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAGCCTGCCTATGGGAGC	NA	False	NA	NA	False	NA	NA	NA	41013262	41034195	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_41013621_41015509_41015603_41016599_41016757_41034067
transcript_22986.nnic	chr13	-	727	4	Genic_Genomic	ENSMUSG00000114672.2	novel	692	1	NA	NA	-6523	13711	multi-exon	FALSE	canonical	0	0	junction_1	0	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTTTACCCGGCCTTTTT	1865	False	NA	NA	False	AATAAA	-23	NA	41034188	41013262	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr13_-_41013621_41026264_41026420_41027610_41027704_41034067
transcript_22988.nnic	chr13	-	921	4	Genic_Genomic	ENSMUSG00000114672.2	novel	692	1	NA	NA	-6560	13711	multi-exon	FALSE	canonical	0	0	junction_1	2.35702260395516	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTTTACCCGGCCTTTTT	1828	False	NA	NA	False	AATAAA	-23	NA	41034225	41013262	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr13_-_41013621_41026264_41026420_41027610_41027861_41034067
transcript_22991.known	chr13	+	4352	3	FSM	ENSMUSG00000021360.17	ENSMUST00000110191.10	4352	3	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	71.5	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCAGGAATAGTGGATATT	NA	False	NA	15	True	AATAAA	-20	NA	41013229	41114363	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_41014750_41107051_41107148_41111627
transcript_22992.known	chr13	+	3929	3	FSM	ENSMUSG00000021360.17	ENSMUST00000069958.15	3929	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	65	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAATAGTGGATATTTATT	NA	False	NA	19	True	AATAAA	-24	NA	41040668	41114367	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_41041762_41107051_41107148_41111627
transcript_22993.known	chr13	+	4038	3	FSM	ENSMUSG00000021360.17	ENSMUST00000067778.8	4038	3	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	29	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATAGTGGATATTTATTT	NA	False	NA	20	True	AATAAA	-25	NA	41071076	41114368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_41072278_41107051_41107148_41111627
transcript_22997.nnic	chr13	-	631	3	Intergenic	novelGene_20	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	3	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTTTACCCGGCCTTTTT	1868	False	NA	NA	False	AATAAA	-23	NA	41034185	41013262	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr13_-_41013621_41026264_41026420_41034067
transcript_22999.nnic	chr13	-	507	3	Antisense	novelGene_ENSMUSG00000021360.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0.5	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTCTCTCAGTGCTTAAT	NA	False	NA	NA	False	AATAAA	-17	NA	41047226	41044513	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr13_-_41044755_41045994_41046101_41047066
transcript_23.known	ERCC-00051	+	258	1	FSM	ERCC-00051A	DQ516740	258	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	151	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	258	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00051_+_0_300
transcript_23001.nnic	chr13	-	622	3	Antisense	novelGene_ENSMUSG00000021360.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_2	1.5	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTCTCTCAGTGCTTAAT	NA	False	NA	NA	False	AATAAA	-17	NA	41047226	41044513	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr13_-_41044870_41045994_41046101_41047066
transcript_23003.nnic	chr13	+	924	3	Intergenic	novelGene_21	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGGAGGGGAGGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	41044513	41047222	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr13_+_41044870_41045994_41046407_41047066
transcript_23006.known	chr13	+	1366	2	FSM	ENSMUSG00000021360.17	ENSMUST00000225759.2	1366	2	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAATAAAAAGC	NA	False	NA	NA	False	AAAACA	-18	NA	41071125	41107265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_41072278_41107051
transcript_23007.known	chr13	-	887	2	FSM	ENSMUSG00000114662.2	ENSMUST00000224935.2	887	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGATCGAACCGGCTTTCC	8274	False	NA	NA	False	NA	NA	NA	41071371	41060807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_41061214_41070890
transcript_23019.known	chr13	+	1722	10	FSM	ENSMUSG00000038683.17	ENSMUST00000046951.10	1722	10	0	0	0	0	multi-exon	FALSE	canonical	3	605	junction_5	43.1108247413169	2484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGCTTAATTACATTTAT	NA	False	NA	NA	False	AGTAAA	-28	NA	41154498	41166491	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_41154890_41158212_41158376_41161491_41161613_41161686_41161762_41162361_41162415_41162694_41162841_41162923_41163022_41164658_41164759_41165809_41165934_41166040
transcript_23043.known	chr13	+	1155	3	FSM	ENSMUSG00000038683.17	ENSMUST00000173238.8	1155	3	0	0	0	0	multi-exon	FALSE	canonical	3	613	junction_2	34.5	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAAAGACAGACAGAAA	NA	False	NA	NA	False	NA	NA	NA	41154499	41162093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_41154890_41158212_41158376_41161491
transcript_23047.known	chr13	+	914	6	FSM	ENSMUSG00000021361.8	ENSMUST00000021790.7	914	6	0	0	0	0	multi-exon	FALSE	canonical	3	613	junction_2	43.7154434954056	8001	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTGTCGTCTTTGTTAG	NA	False	NA	15	True	AATAAA	-22	NA	41169767	41176062	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_41169875_41170590_41170650_41171181_41171259_41171831_41171934_41174594_41174683_41175581
transcript_2305.nnic	chr1	+	1133	6	Fusion	ENSMUSG00000027520.17_ENSMUSG00000086730.3	novel	462	2	NA	NA	-81	7912	multi-exon	FALSE	canonical	3	22	junction_2	8.44748483277715	45	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAATTCAGTCGGTGTTGT	NA	False	NA	NA	False	CATAAA	-22	NA	63239390	63342093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr1_+_63239834_63246673_63246774_63317089_63317143_63319925_63320037_63334074_63334206_63341798
transcript_23066.nnic	chr13	+	911	5	NIC	ENSMUSG00000021361.8	novel	914	6	NA	NA	-56	0	combination_of_known_splicesites	FALSE	canonical	3	108	junction_1	251.069089097005	1956	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTGTCGTCTTTGTTAG	NA	False	NA	15	True	AATAAA	-22	NA	41169711	41176062	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_41169875_41171181_41171259_41171831_41171934_41174594_41174683_41175581
transcript_2307.nnic	chr1	+	1403	6	Fusion	ENSMUSG00000027520.17_ENSMUSG00000086730.3	novel	462	2	NA	NA	-81	8182	multi-exon	FALSE	canonical	3	22	junction_2	8.44748483277715	62	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTAAGTATAAATTTAGACAA	NA	False	NA	NA	False	AAAAAG	-4	NA	63239390	63342363	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr1_+_63239834_63246673_63246774_63317089_63317143_63319925_63320037_63334074_63334206_63341798
transcript_23071.known	chr13	-	3073	5	FSM	ENSMUSG00000021362.8	ENSMUST00000021791.8	3073	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	4.84767985741633	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTTAATCTCTTCAAGAG	NA	False	NA	NA	False	NA	NA	NA	41263659	41254903	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_41257166_41258044_41258171_41258886_41259000_41259124_41259378_41263340
transcript_23097.known	chr13	-	3840	8	FSM	ENSMUSG00000021364.17	ENSMUST00000021793.15	3840	8	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_4	7.79848232226067	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTTAGATTCTTAATTCA	7559	False	NA	NA	False	AATAAA	-18	NA	41373881	41335856	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_41338884_41340328_41340464_41340904_41341030_41343421_41343594_41345363_41345442_41348122_41348311_41350610_41350675_41373830
transcript_23099.known	chr13	-	384	1	FSM	ENSMUSG00000114238.2	ENSMUST00000224932.2	384	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCTATGCCATATTTTCAA	NA	False	NA	NA	False	NA	NA	NA	41388553	41388169	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_41388200_41388600
transcript_23101.known	chr13	+	4483	2	FSM	ENSMUSG00000091264.4	ENSMUST00000165561.4	4483	2	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_1	0	503	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTGCCTCATTGGTTA	NA	False	NA	NA	False	AATAAA	-19	NA	41403319	41430053	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_41403791_41426041
transcript_23105.known	chr13	-	1046	8	FSM	ENSMUSG00000058022.15	ENSMUST00000179758.8	1046	8	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	8.48046975980333	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCTCTTGGGATCTCCT	NA	False	NA	-35	True	AATAAA	-13	NA	42001092	41918065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_41918090_41918120_41918269_41920811_41920964_41930983_41931100_41967690_41967793_41969613_41969749_41981618_41981862_42000966
transcript_23109.known	chr13	-	1602	7	FSM	ENSMUSG00000058022.15	ENSMUST00000121404.8	1602	7	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_6	3.97562014729219	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAGTTTAAGAAACA	NA	False	NA	NA	False	NA	NA	NA	42001160	41917608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_41918269_41920811_41920964_41930983_41931100_41967690_41967793_41969613_41969749_41981618_41981862_42000966
transcript_23114.known	chr13	+	8753	9	FSM	ENSMUSG00000021366.9	ENSMUST00000060148.6	8753	9	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	8.24526379202024	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTGGTGCTTACGTCTC	NA	False	NA	2	True	AGTAAA	-15	NA	42205496	42338502	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_42205567_42208875_42209019_42276635_42276690_42307855_42313795_42316826_42316961_42317692_42317869_42321037_42321140_42334907_42335408_42336867
transcript_23115.known	chr13	+	2139	5	FSM	ENSMUSG00000021367.9	ENSMUST00000021796.9	2139	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	2.44948974278318	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACTTGTGAATTATTTCT	NA	False	NA	NA	False	AATAAA	-18	NA	42454951	42461466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_42455435_42457032_42457202_42458421_42458581_42458730_42458845_42460252
transcript_23119.known	chr13	+	716	5	FSM	ENSMUSG00000054728.18	ENSMUST00000136576.8	716	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_4	2.29128784747792	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGATTCTGTGTGCAGGA	NA	False	NA	NA	False	NA	NA	NA	43276332	43288887	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_43276531_43281613_43281676_43286395_43286537_43287402_43287480_43288649
transcript_23127.known	chr13	-	1246	8	FSM	ENSMUSG00000021368.16	ENSMUST00000179852.9	1246	8	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_7	48.9393627307283	1438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGGCGTGGCCATGATG	NA	False	NA	-17	True	AGTAAA	-16	NA	43324960	43305215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_43305457_43306545_43306676_43308164_43308311_43312738_43312877_43318754_43318943_43322249_43322331_43323277_43323424_43324784
transcript_23128.known	chr13	-	1239	8	FSM	ENSMUSG00000021368.16	ENSMUST00000021797.9	1239	8	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_7	94.4833426632246	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGCCTGGCGTGGCCAT	NA	False	NA	-21	True	AGTAAA	-12	NA	43324977	43305219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_43305457_43306545_43306676_43308164_43308311_43312738_43312877_43318754_43318943_43322249_43322331_43323277_43323424_43324804
transcript_23132.known	chr13	-	892	8	FSM	ENSMUSG00000021368.16	ENSMUST00000220787.2	892	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	99.9534585572256	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATCACCTGCTCTACCAA	NA	False	NA	-121	True	NA	NA	NA	43324824	43305319	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_43305457_43306659_43306676_43308164_43308311_43312738_43312877_43318754_43318943_43322249_43322331_43323277_43323424_43324784
transcript_23134.known	chr13	-	917	7	FSM	ENSMUSG00000021368.16	ENSMUST00000222160.2	917	7	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_6	101.68811249218	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAACCTTTAAAATAAAGG	NA	False	NA	NA	False	NA	NA	NA	43324959	43306612	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_43306676_43308164_43308311_43312738_43312877_43318754_43318943_43322249_43322331_43323277_43323424_43324804
transcript_23135.known	chr13	-	6928	2	FSM	ENSMUSG00000051335.7	ENSMUST00000055341.7	6928	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGATTCCAGCCTGGTCTT	NA	False	NA	-4	True	AATAAA	-15	NA	43457648	43348720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_43354721_43456720
transcript_2314.known	chr1	+	4486	12	FSM	ENSMUSG00000025962.16	ENSMUST00000027103.7	4486	12	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_4	54.5943720043143	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGTACAGTTTGATACTT	NA	False	NA	NA	False	NA	NA	NA	63769772	63793814	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_63769851_63770558_63771381_63773890_63773995_63774621_63774731_63775003_63775128_63776937_63777078_63778340_63778514_63785000_63785165_63787116_63787330_63788844_63788930_63790422_63790538_63791455
transcript_23141.nic	chr13	+	1535	9	NIC	ENSMUSG00000054021.7	novel	1579	9	NA	NA	35	0	combination_of_known_junctions	FALSE	canonical	3	172	junction_8	20.7710736361893	569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTATTTTTTTGTACTTT	NA	False	NA	10	True	ATTAAA	-22	NA	43519040	43548679	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_43519217_43524194_43524345_43525307_43525442_43530170_43530397_43533148_43533237_43533975_43534030_43536584_43536709_43538973_43539090_43548212
transcript_23149.known	chr13	+	1398	9	FSM	ENSMUSG00000054021.7	ENSMUST00000223194.2	1398	9	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	63.0811729044411	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTATTTTTTTGTACTTT	NA	False	NA	10	True	ATTAAA	-22	NA	43518981	43548679	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_43519021_43524194_43524345_43525307_43525442_43530170_43530397_43533148_43533237_43533975_43534030_43536584_43536709_43538973_43539090_43548212
transcript_23150.known	chr13	+	1367	8	FSM	ENSMUSG00000054021.7	ENSMUST00000066804.5	1367	8	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_7	21.27372625027	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTATTTTTTTGTACTT	NA	False	NA	9	True	ATTAAA	-21	NA	43524185	43548678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_43524345_43525307_43525442_43530170_43530397_43533148_43533237_43533975_43534030_43536584_43536709_43538973_43539090_43548212
transcript_23158.known	chr13	+	1800	8	FSM	ENSMUSG00000063200.5	ENSMUST00000071926.5	1800	8	0	0	0	0	multi-exon	FALSE	canonical	3	1274	junction_1	87.1250567299906	7870	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTGACATGTAATACTGT	NA	False	NA	NA	False	AATAAA	-14	NA	43551865	43556337	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_43552135_43552210_43552272_43552986_43553046_43554068_43554098_43554328_43554411_43554772_43554895_43554975_43555054_43555237
transcript_23159.known	chr13	+	220	2	FSM	ENSMUSG00000063200.5	ENSMUST00000220997.2	220	2	0	0	0	0	multi-exon	FALSE	canonical	3	1479	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTATTGCAGTTTCTAC	NA	False	NA	NA	False	NA	NA	NA	43552110	43553045	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_43552272_43552986
transcript_23163.known	chr13	+	843	2	FSM	ENSMUSG00000112983.2	ENSMUST00000222336.2	843	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATCTTCTCTTGCTTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	43683695	43685257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_43683855_43684573
transcript_23165.known	chr13	-	4339	9	FSM	ENSMUSG00000021371.6	ENSMUST00000021800.6	4339	9	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_1	32.5720355519885	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGTGTACAGTGTTTTA	NA	False	NA	NA	False	AATAAA	-29	NA	43713637	43691868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_43695206_43697931_43698047_43699163_43699218_43702126_43702199_43703007_43703050_43704472_43704575_43705072_43705177_43708371_43708492_43713244
transcript_23169.known	chr13	+	3544	2	FSM	ENSMUSG00000044164.3	ENSMUST00000059986.3	3544	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCATGGTTCCCCTGATTT	3644	False	NA	NA	False	ATTAAA	-21	NA	43769185	43824421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_43769544_43821235
transcript_23172.known	chr13	-	673	3	FSM	ENSMUSG00000113252.2	ENSMUST00000223171.2	673	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGCTTTTTGGTCATGG	NA	False	NA	NA	False	NA	NA	NA	44171998	44164067	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_44164387_44165586_44165819_44171876
transcript_23173.nnic	chr13	-	800	3	NNC	ENSMUSG00000113252.2	novel	673	3	NA	NA	-427	-5379	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	0.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGCTTAATTGAGTCAT	NA	False	NA	NA	False	NA	NA	NA	44172425	44169446	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_44169788_44171876_44172050_44172139
transcript_23175.known	chr13	+	1204	5	FSM	ENSMUSG00000089815.8	ENSMUST00000163056.8	1204	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGTGTATTGATTCATAAG	NA	False	NA	NA	False	AATAAA	-17	NA	44274642	44278655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_44274918_44275529_44275674_44277709_44277864_44277947_44278053_44278129
transcript_23176.nnic	chr13	-	637	3	Intergenic	novelGene_22	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	0.5	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGCTAATGTTCATATTAC	NA	False	NA	NA	False	AATAAA	-28	NA	44363650	44357026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr13_-_44357201_44360829_44360917_44363274
transcript_23188.known	chr13	+	5997	18	FSM	ENSMUSG00000038518.16	ENSMUST00000173246.8	5997	18	0	0	0	0	multi-exon	FALSE	canonical	3	632	junction_5	80.8182205637225	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTCTTGTGGGAAGGG	NA	False	NA	16	True	AATAAA	-18	NA	44884746	45075119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_44885393_44976855_44976992_45001755_45001898_45027758_45027929_45038179_45038357_45049729_45049966_45055701_45056735_45059708_45060212_45060969_45061063_45063818_45063938_45064012_45064084_45064641_45064757_45066656_45066763_45067126_45067310_45067721_45067853_45068239_45068424_45069892_45070001_45073275
transcript_23191.known	chr13	-	1362	10	FSM	ENSMUSG00000057531.15	ENSMUST00000072329.15	1362	10	0	0	0	0	multi-exon	FALSE	canonical	3	444	junction_2	46.8187996428785	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTGCAGCTGGTGAGTA	NA	False	NA	NA	False	AATAAA	-15	NA	45155623	45075554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_45075931_45076624_45076769_45084471_45084628_45106647_45106671_45123521_45123655_45136216_45136350_45139510_45139572_45145494_45145546_45147160_45147215_45155392
transcript_23193.nnic	chr13	-	758	4	NNC	ENSMUSG00000057531.15	novel	1362	10	NA	NA	-5744	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	212.48111027153	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTGCAGCTGGTGAGTA	NA	False	NA	NA	False	AATAAA	-15	NA	45106364	45075554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_45075931_45076624_45076769_45084471_45084628_45106282
transcript_23195.known	chr13	+	3065	7	FSM	ENSMUSG00000038175.11	ENSMUST00000038275.11	3065	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_3	5.98377435700541	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCCTTTGTGATCTTAT	4395	False	NA	NA	False	AATAAA	-15	NA	45543217	45565498	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_45543520_45544664_45544856_45557875_45558062_45559368_45559567_45560032_45560198_45561831_45562253_45563896
transcript_23196.nic	chr13	+	1093	2	ISM	ENSMUSG00000038175.11	ENSMUST00000038275.11	3065	7	-40	20083	-40	-19106	5prime_fragment	FALSE	canonical	3	48	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTGTTGTTGTTTTTTTC	4355	False	NA	NA	False	ATTAAA	-14	NA	45543177	45545415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_+_45543520_45544664
transcript_23197.nnic	chr13	+	1693	10	NNC	ENSMUSG00000000253.14	novel	1580	9	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_5	25.8370965001015	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTGCTGGAGTTTGCGT	NA	False	NA	22	True	AATATA	-16	NA	45660899	45699858	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_45661220_45667870_45667991_45670474_45670559_45674327_45674502_45674602_45674696_45683183_45683266_45685769_45685877_45692500_45692544_45695954_45696115_45699348
transcript_23198.known	chr13	+	1580	9	FSM	ENSMUSG00000000253.14	ENSMUST00000000260.13	1580	9	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_4	10.0428768288773	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTGCTGGAGTTTGCGT	NA	False	NA	22	True	AATATA	-16	NA	45660919	45699858	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_45661220_45667870_45667991_45670474_45670559_45674327_45674502_45683183_45683266_45685769_45685877_45692500_45692544_45695954_45696115_45699348
transcript_23201.known	chr13	+	765	2	FSM	ENSMUSG00000113987.2	ENSMUST00000222376.2	765	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCCTTCCCTTTGCTTGT	NA	False	NA	NA	False	AATAAA	-19	NA	46089515	46090380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_46089613_46089712
transcript_23202.known	chr13	+	729	2	FSM	ENSMUSG00000038152.5	ENSMUST00000038032.5	729	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCAGTGGTGTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	46118728	46119984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_46118860_46119386
transcript_23204.known	chr13	+	3713	13	FSM	ENSMUSG00000021373.17	ENSMUST00000021802.16	3713	13	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	4.58257569495584	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTTTTTGTTGTCAATA	NA	False	NA	NA	False	AATAAA	-7	NA	46655323	46803757	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_46655688_46678890_46679013_46684452_46684554_46713979_46714058_46763071_46763216_46763539_46763626_46768725_46768832_46789096_46789287_46791324_46791498_46793298_46793423_46793515_46793599_46800001_46800143_46801756
transcript_23207.nnic	chr13	+	544	3	NNC	ENSMUSG00000021373.17	novel	3713	13	NA	NA	5702	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	13.5	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAATATTTAACATTTGA	NA	False	NA	NA	False	AAAACA	-32	NA	46799235	46802002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_46799393_46800001_46800143_46801756
transcript_23208.known	chr13	-	597	2	FSM	ENSMUSG00000021374.11	ENSMUST00000182156.2	597	2	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATCTGAAGTCAGATCTGC	NA	False	NA	NA	False	NA	NA	NA	46835428	46834550	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_46834719_46834999
transcript_23214.nnic	chr13	+	897	2	Antisense	novelGene_ENSMUSG00000021375.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	7	junction_1	0	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAATTTGTGTCTGTTTGCT	NA	False	NA	NA	False	AATAAA	-17	NA	46966148	46969136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr13_+_46966409_46968499
transcript_23217.known	chr13	-	707	3	FSM	ENSMUSG00000021375.12	ENSMUST00000225904.2	707	3	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_2	3.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAAAATCCTTTATTTCA	NA	False	NA	NA	False	AATAAA	-15	NA	46947524	46941310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_46941686_46944809_46944984_46947366
transcript_23218.known	chr13	-	2294	1	FSM	ENSMUSG00000044231.4	ENSMUST00000052747.4	2294	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGCTGGAAACGTGTCTT	NA	False	NA	-1	True	AATAAA	-18	NA	47168326	47166032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_47166000_47168300
transcript_23219.known	chr13	+	4987	21	FSM	ENSMUSG00000038080.18	ENSMUST00000037025.16	4987	21	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	9.84682690007294	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCAGTTTTTGAAGCTGTG	1161	False	NA	NA	False	TATAAA	-20	NA	47196974	47238755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_47197147_47201378_47201479_47202653_47202782_47204085_47204176_47205264_47205377_47207094_47207212_47212251_47212291_47214228_47214458_47216433_47216619_47217529_47217707_47218046_47218122_47220920_47221059_47221939_47222112_47225367_47225496_47227186_47227319_47227829_47227905_47230858_47230976_47231743_47231870_47232658_47232776_47233911_47234065_47236350
transcript_23224.nic	chr13	-	2621	10	ISM	ENSMUSG00000021377.16	ENSMUST00000021807.13	2556	11	270	0	-90	0	3prime_fragment	FALSE	canonical	3	1428	junction_1	93.7092956902645	597	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCTTGTATTTAATCTTT	NA	False	NA	-15	True	AATAAA	-20	NA	47259396	47238257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_47239556_47239900_47239970_47241500_47241650_47241952_47242092_47251630_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047
transcript_23232.known	chr13	-	2708	9	FSM	ENSMUSG00000021376.12	ENSMUST00000021806.11	2708	9	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_8	22.6436387314407	785	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTGAGCTTGGTAATTT	NA	False	NA	NA	False	AATAAA	-16	NA	47196686	47177018	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_47178954_47180727_47180773_47182357_47182444_47185893_47185969_47188496_47188550_47189370_47189504_47193579_47193673_47194874_47195056_47196579
transcript_23233.nic	chr13	-	1193	9	NIC	ENSMUSG00000021376.12	novel	2708	9	NA	NA	-9	2	combination_of_known_junctions	FALSE	canonical	3	43	junction_8	30.2438010177292	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTAGCCATGGTTTCTG	NA	False	NA	0	True	ATTAAA	-19	NA	47196828	47178652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_47178954_47180727_47180773_47182357_47182444_47185893_47185969_47188496_47188550_47189370_47189504_47193579_47193673_47194874_47195056_47196602
transcript_23237.known	chr13	-	881	9	FSM	ENSMUSG00000021376.12	ENSMUST00000110118.8	881	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	45.7764609269874	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTATTAGCCATGGTTTC	NA	False	NA	-2	True	ATTAAA	-17	NA	47196600	47178654	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_47178849_47180727_47180773_47182357_47182444_47185893_47185969_47188496_47188550_47189370_47189504_47193579_47193673_47194874_47195056_47196579
transcript_23249.known	chr13	-	876	6	FSM	ENSMUSG00000021377.16	ENSMUST00000129352.3	876	6	0	0	0	0	multi-exon	FALSE	canonical	3	1443	junction_3	105.718494124727	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAGTGTTTTAAGCTGTT	NA	False	NA	26	True	AAGAAA	-12	NA	47259306	47251630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047
transcript_2325.known	chr1	+	2613	11	FSM	ENSMUSG00000025962.16	ENSMUST00000128621.8	2613	11	0	0	0	0	multi-exon	FALSE	canonical	3	319	junction_1	49.2621558602544	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTGTTGTCATTGGTA	NA	False	NA	78	True	NA	NA	NA	63769801	63791697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_63769851_63770558_63771381_63773890_63773995_63774621_63775128_63776937_63777078_63778340_63778514_63785000_63785165_63787116_63787330_63788844_63788930_63790422_63790538_63791455
transcript_23252.known	chr13	-	315	3	FSM	ENSMUSG00000021376.12	ENSMUST00000124948.2	315	3	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_2	60.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATGAAATGGTATGCACAA	NA	False	NA	NA	False	NA	NA	NA	47196614	47193589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_47193673_47194874_47195072_47196579
transcript_23253.known	chr13	-	698	3	FSM	ENSMUSG00000021376.12	ENSMUST00000133100.2	698	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	41	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAAAAAAAAGTAAGA	NA	False	NA	NA	False	NA	NA	NA	47196620	47193173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_47193673_47194874_47195056_47196602
transcript_23256.known	chr13	-	2556	11	FSM	ENSMUSG00000021377.16	ENSMUST00000021807.13	2556	11	0	0	0	0	multi-exon	FALSE	canonical	3	1333	junction_10	113.482333426838	729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCTTGTATTTAATCTTT	NA	False	NA	-15	True	AATAAA	-20	NA	47259666	47238257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_47239556_47239900_47239970_47241500_47241650_47241952_47242092_47251630_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047_47259214_47259548
transcript_23260.known	chr13	-	672	3	FSM	ENSMUSG00000097326.3	ENSMUST00000180777.3	672	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	5	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTTTGTATGTGTGATA	NA	False	NA	1	True	ATTAAA	-15	NA	48427360	48425888	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_48426292_48426385_48426533_48427238
transcript_23261.nnic	chr13	-	795	3	NNC	ENSMUSG00000097326.3	novel	672	3	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	6	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTTTGTATGTGTGATA	NA	False	NA	1	True	ATTAAA	-15	NA	48427392	48425888	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_48426292_48426385_48426624_48427238
transcript_23264.nnic	chr13	-	852	6	NNC	ENSMUSG00000050954.16	novel	4175	4	NA	NA	-3	48113	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6.82934843158555	11	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTAGTGCTGCCGAACC	NA	False	NA	NA	False	NA	NA	NA	48666930	48593009	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_48593423_48630119_48630181_48651798_48651895_48652255_48652383_48660382_48660470_48666862
transcript_23267.known	chr13	+	786	2	FSM	ENSMUSG00000053181.2	ENSMUST00000065465.2	786	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAAAATAAAATCAGT	3977	False	NA	NA	False	AGTAAA	-22	NA	48667045	48668335	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_48667106_48667609
transcript_23269.known	chr13	-	5105	18	FSM	ENSMUSG00000038014.8	ENSMUST00000060805.7	5105	18	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_8	31.720775722809	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTATGGTGTGGCTTTTA	6383	False	NA	-18	True	AATAAA	-21	NA	49121493	49032694	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_49034572_49038748_49038846_49039212_49039355_49042599_49042738_49043230_49043415_49045356_49045567_49051135_49051251_49055533_49055784_49063731_49063907_49066332_49066561_49068337_49068426_49075157_49075442_49075628_49075727_49085772_49085870_49087425_49087555_49099417_49099501_49102532_49102780_49120830
transcript_23275.known	chr13	+	1187	4	FSM	ENSMUSG00000037966.16	ENSMUST00000049022.15	1187	4	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_2	21.013223349966	1615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGGGTTCCATGTGCCA	NA	False	NA	13	True	AATAAA	-15	NA	49340960	49349720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_49341114_49347211_49347441_49348369_49348534_49349079
transcript_23276.known	chr13	+	1321	5	FSM	ENSMUSG00000037966.16	ENSMUST00000120733.8	1321	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	186.87077754427	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGGGTTCCATGTGCCA	NA	False	NA	13	True	AATAAA	-15	NA	49341000	49349720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_49341114_49344560_49344735_49347211_49347441_49348369_49348534_49349079
transcript_23284.known	chr13	-	804	6	FSM	ENSMUSG00000037960.12	ENSMUST00000048946.7	804	6	0	0	0	0	multi-exon	FALSE	canonical	3	362	junction_5	10.4115320678563	499	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGCCTGTCGAATGTCTT	NA	False	NA	-7	True	ATTAAA	-13	NA	49369502	49356426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_49356712_49357193_49357266_49357404_49357465_49358667_49358822_49361479_49361623_49369412
transcript_23285.known	chr13	-	1418	5	FSM	ENSMUSG00000021384.15	ENSMUST00000058196.13	1418	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	5.02493781056044	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCGGTTGGCAGAATGCT	NA	False	NA	NA	False	CATAAA	-25	NA	49401770	49384165	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_49384808_49390899_49391089_49392264_49392413_49393958_49394148_49401520
transcript_23288.nnic	chr13	-	980	4	NIC	ENSMUSG00000021384.15	novel	1418	5	NA	NA	-30	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_3	5.8878405775519	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTAGCCACCTTATCATC	NA	False	NA	4	True	AATAAA	-16	NA	49401660	49384304	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_49384808_49390899_49391089_49392264_49392413_49401520
transcript_23289.known	chr13	-	1249	3	FSM	ENSMUSG00000021384.15	ENSMUST00000119721.2	1249	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATTAAAAAAATTAAAAAC	NA	False	NA	NA	False	AATAAA	-5	NA	49401630	49391462	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_49392413_49393958_49394148_49401520
transcript_23290.known	chr13	-	1144	8	FSM	ENSMUSG00000021391.11	ENSMUST00000021818.9	1144	8	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_6	22.1387092889263	973	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATAGTGCTTTGTACAGTT	NA	False	NA	-4	True	AATAAA	-21	NA	49806261	49617498	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_49617814_49618170_49618263_49619154_49619235_49780730_49780828_49794701_49794791_49801041_49801131_49803596_49803776_49806058
transcript_23299.nnic	chr13	-	1088	6	NIC	ENSMUSG00000021391.11	novel	1144	8	NA	NA	-122	0	combination_of_known_splicesites	FALSE	canonical	1	4	junction_4	81.0668859646157	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATAGTGCTTTGTACAGTT	NA	False	NA	-4	True	AATAAA	-21	NA	49806383	49617498	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_49617814_49618170_49618263_49619154_49619235_49780730_49780828_49803596_49803776_49806058
transcript_2330.nic	chr1	+	1741	6	ISM	ENSMUSG00000025962.16	ENSMUST00000027103.7	4486	12	5	16368	5	440	5prime_fragment	FALSE	canonical	3	308	junction_4	44.0545116872268	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACCTTGTCTGTTGTTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	63769777	63777446	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_63769851_63770558_63771381_63773890_63773995_63774621_63774731_63775003_63775128_63776937
transcript_23307.known	chr13	+	4421	13	FSM	ENSMUSG00000021385.11	ENSMUST00000220447.2	4421	13	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_9	16.41053184865	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTATGACATTTTCAACT	NA	False	NA	NA	False	ATTAAA	-29	NA	49574724	49618049	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_49574943_49584344_49584393_49585845_49585942_49587304_49587372_49588945_49589068_49590186_49590277_49595428_49595488_49596897_49596971_49599778_49600053_49602712_49602864_49603456_49603560_49612088_49612169_49615009
transcript_2331.known	chr1	+	327	2	FSM	ENSMUSG00000025962.16	ENSMUST00000134454.2	327	2	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCGTGGATCAGCTGGCTG	NA	False	NA	5	True	AATAAA	-16	NA	63790379	63791624	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_63790538_63791455
transcript_23310.nnic	chr13	+	874	7	NNC	ENSMUSG00000021385.11	novel	4421	13	NA	NA	-30	-24823	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_6	51.3173676470473	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTTCTGGAAGGGCAGCC	NA	False	NA	NA	False	NA	NA	NA	49574694	49591554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_49574943_49584344_49584393_49585845_49585942_49587304_49587372_49588945_49589068_49590186_49590277_49591351
transcript_23312.known	chr13	+	4381	17	FSM	ENSMUSG00000021392.9	ENSMUST00000221142.2	4381	17	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	40.4735639028737	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGTCTTTTATTTAAAAA	NA	False	NA	23	True	ATTAAA	-16	NA	49806814	49832492	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_49807159_49807826_49807979_49808648_49808712_49810150_49810230_49812171_49812308_49813425_49813495_49814433_49816252_49817529_49817644_49818203_49818327_49818854_49818946_49820830_49820967_49823184_49823263_49826027_49826300_49828861_49828989_49829797_49829866_49830230_49830311_49831861
transcript_23313.known	chr13	+	600	6	FSM	ENSMUSG00000021392.9	ENSMUST00000222333.2	600	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	55.5215273565128	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCTGTGCCTGGAACAGA	NA	False	NA	NA	False	NA	NA	NA	49806825	49812271	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_49806874_49807004_49807159_49807822_49807979_49808648_49808712_49810150_49810230_49812171
transcript_23314.known	chr13	+	4368	17	FSM	ENSMUSG00000021392.9	ENSMUST00000222197.2	4368	17	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_13	21.5653077882046	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTCAGAACAGCATCCATT	NA	False	NA	-69	True	NA	NA	NA	49806553	49832214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_49807159_49807822_49807979_49808648_49808712_49810150_49810230_49812171_49812308_49813425_49813495_49814433_49816252_49817529_49817644_49818203_49818327_49818854_49818946_49820830_49820967_49823184_49823263_49826027_49826300_49828861_49828989_49829797_49829866_49830230_49830311_49831861
transcript_23316.known	chr13	+	4242	18	FSM	ENSMUSG00000021392.9	ENSMUST00000021824.8	4242	18	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	39.8711592828771	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTGTCTTTTATTTAAAA	NA	False	NA	22	True	ATTAAA	-15	NA	49806825	49832491	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_49806874_49807004_49807159_49807822_49807979_49808648_49808712_49810150_49810230_49812171_49812308_49813425_49813495_49814433_49816252_49817529_49817644_49818203_49818327_49818854_49818946_49820830_49820967_49823184_49823263_49826027_49826300_49828861_49828989_49829797_49829866_49830230_49830311_49831861
transcript_23317.known	chr13	+	363	4	FSM	ENSMUSG00000021392.9	ENSMUST00000223264.2	363	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	66.5482281256734	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGATTTGCCTCACATTT	NA	False	NA	NA	False	AAGAAA	-14	NA	49806808	49810229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_49806874_49807822_49807979_49808648_49808712_49810150
transcript_23318.known	chr13	+	4396	34	FSM	ENSMUSG00000037851.14	ENSMUST00000047363.14	4396	34	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_17	328.385946197822	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGAAGTAGTTATTCTC	NA	False	NA	30	True	ATTAAA	-31	NA	49835605	49887743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865312_49868288_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
transcript_23327.nnic	chr13	+	1459	11	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	-9	-7960	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	514.720594109076	110	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGCTTTTGGTTTTCATTT	NA	False	NA	NA	False	AATAAA	-15	NA	49835566	49857297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49856948
transcript_23331.nic	chr13	+	1218	10	ISM	ENSMUSG00000037851.14	ENSMUST00000165316.8	4426	34	-9	30897	-9	-8411	5prime_fragment	FALSE	canonical	3	1400	junction_1	130.116187395044	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAATGGAATCTTTTTGTCT	NA	False	NA	NA	False	ATTAAA	-20	NA	49835566	49856846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642
transcript_2334.nic	chr1	-	1227	5	NIC	ENSMUSG00000025959.14	novel	7662	4	NA	NA	-25	-6214	combination_of_known_junctions	FALSE	canonical	1	2	junction_4	5.02493781056044	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAACAAGAACAAAACACCGC	NA	False	NA	NA	False	NA	NA	NA	64160675	64074819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_64074924_64081472_64081597_64117865_64118494_64160058_64160299_64160544
transcript_23340.known	chr13	+	4426	34	FSM	ENSMUSG00000037851.14	ENSMUST00000165316.8	4426	34	0	0	0	0	multi-exon	FALSE	canonical	1	598	junction_17	241.366305222171	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGAAGTAGTTATTCTC	NA	False	NA	30	True	ATTAAA	-31	NA	49835575	49887743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
transcript_23341.nic	chr13	+	952	4	ISM	ENSMUSG00000037851.14	ENSMUST00000165316.8	4426	34	-9	45188	-9	766	5prime_fragment	FALSE	canonical	3	1400	junction_1	175.617640217478	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGTCTCTGTATTTATCT	NA	False	NA	NA	False	NA	NA	NA	49835566	49842555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999
transcript_23345.known	chr13	+	1798	10	FSM	ENSMUSG00000037816.11	ENSMUST00000046974.5	1798	10	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_8	4.29469957557504	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAGAGACACATTCCTGCA	NA	False	NA	NA	False	ATTAAA	-21	NA	50571899	50587805	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_50572024_50573875_50573914_50577237_50577399_50577787_50577907_50579592_50579803_50580657_50580817_50585575_50585787_50586206_50586383_50586463_50586592_50587333
transcript_2335.nic	chr1	-	1232	5	NIC	ENSMUSG00000025959.14	novel	7662	4	NA	NA	-55	-6214	combination_of_known_junctions	FALSE	canonical	2	2	junction_4	5.02493781056044	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAACAAGAACAAAACACCGC	NA	False	NA	NA	False	NA	NA	NA	64161496	64074819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_64074924_64081472_64081597_64117865_64118494_64160058_64160299_64161360
transcript_23360.known	chr13	+	4434	6	FSM	ENSMUSG00000021395.12	ENSMUST00000095797.6	4434	6	0	0	0	0	multi-exon	FALSE	canonical	3	703	junction_1	64.2227374066226	332	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGTGGCTGTGAACTTT	NA	False	NA	NA	False	AATAAA	-13	NA	51254915	51306582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_51255027_51277123_51277325_51281960_51282010_51293392_51293647_51298337_51298572_51302997
transcript_23366.known	chr13	+	1167	2	FSM	ENSMUSG00000021396.6	ENSMUST00000021828.6	1167	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCTCTGATGTCCTTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	51325057	51329224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_51325661_51328660
transcript_2337.known	chr1	-	7662	4	FSM	ENSMUSG00000025959.14	ENSMUST00000114086.8	7662	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	3.85861230093008	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTCACTGTGTTTCCCCTC	NA	False	NA	-5	True	AATAAA	-27	NA	64160650	64068605	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_64074924_64081472_64081597_64117865_64118494_64160058
transcript_23375.known	chr13	+	692	3	FSM	ENSMUSG00000062248.6	ENSMUST00000075853.6	692	3	0	0	0	0	multi-exon	FALSE	canonical	3	3514	junction_2	7.5	23263	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATTGTTGAAATTAATTTG	NA	False	NA	NA	False	AATAAA	-24	NA	51799267	51804696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_51799508_51803620_51803749_51804372
transcript_23376.known	chr13	+	3328	17	FSM	ENSMUSG00000035139.15	ENSMUST00000040117.15	3328	17	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_13	19.2596363867546	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGGCTATTGTGATCTT	5494	False	NA	8	True	AATAAA	-20	NA	51805732	51838080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_51805857_51806642_51806792_51808421_51808672_51809134_51809277_51810916_51811147_51816656_51816736_51819307_51819511_51824842_51824966_51827105_51827196_51827923_51828066_51830322_51830490_51831176_51831316_51832869_51833027_51833768_51833990_51836035_51836191_51836479_51836670_51837313
transcript_2338.nnic	chr1	-	994	4	NIC	ENSMUSG00000025959.14	novel	7662	4	NA	NA	-57	-6214	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	4.24264068711928	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAACAAGAACAAAACACCGC	NA	False	NA	NA	False	NA	NA	NA	64161498	64074819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_64074924_64081472_64081597_64117865_64118494_64161360
transcript_23386.known	chr13	+	1915	7	FSM	ENSMUSG00000035139.15	ENSMUST00000110044.2	1915	7	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_2	16.121069719125	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGATCACATGATACTAC	5538	False	NA	NA	False	AGTAAA	-17	NA	51805776	51820292	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_51805857_51806642_51806792_51808421_51808672_51809134_51809277_51810916_51811147_51816656_51816736_51819307
transcript_23388.known	chr13	-	4472	17	FSM	ENSMUSG00000021451.17	ENSMUST00000110040.9	4472	17	0	0	0	0	multi-exon	TRUE	canonical	3	16	junction_15	57.0268234583516	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCCAGCCTTTGCCTTA	NA	False	NA	-4	True	AATAAA	-20	NA	51947709	51855281	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_51857568_51858988_51859033_51859108_51859282_51862910_51863027_51863947_51864171_51865235_51865393_51865484_51865661_51866714_51866867_51867727_51867842_51868829_51868924_51874541_51874641_51876353_51876417_51877578_51877725_51879259_51879579_51888542_51888607_51917287_51917357_51947532
transcript_23389.known	chr13	+	1071	4	FSM	ENSMUSG00000021453.3	ENSMUST00000021903.3	1071	4	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_3	4.02768199119819	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAACTTAATGCCTTTT	NA	False	NA	NA	False	AATAAA	-8	NA	52000713	52002504	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_52000869_52001387_52001490_52001591_52001806_52001904
transcript_2339.known	chr1	+	5009	9	FSM	ENSMUSG00000025958.15	ENSMUST00000049932.12	5009	9	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	35.7786161694384	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTTTTCAGAAGATTAC	NA	False	NA	NA	False	TTTAAA	-42	NA	64571967	64640416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_64572064_64590007_64590130_64597661_64597809_64598885_64598928_64605375_64605477_64609292_64609436_64613231_64613415_64615337_64615489_64636392
transcript_23390.known	chr13	+	863	3	FSM	ENSMUSG00000021453.3	ENSMUST00000132480.2	863	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	4.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAGGGCCGGGAAGAACC	NA	False	NA	NA	False	NA	NA	NA	52000779	52002260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_52000869_52001387_52001806_52001904
transcript_23393.known	chr13	+	3270	8	FSM	ENSMUSG00000113211.2	ENSMUST00000220691.2	3270	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	3.45229884959845	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAATGTGTGTATAAT	NA	False	NA	NA	False	NA	NA	NA	52250776	52278194	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_52250877_52252577_52252882_52253329_52253416_52272202_52272728_52273173_52273596_52274101_52274239_52276192_52276778_52277083
transcript_2340.known	chr1	+	1260	9	FSM	ENSMUSG00000025958.15	ENSMUST00000190348.2	1260	9	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	27.9773904251272	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTATGCGCAAAACTGCCTG	NA	False	NA	NA	False	AGTAAA	-28	NA	64572052	64636636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_64572180_64590007_64590130_64597661_64597809_64598885_64598928_64605375_64605477_64609292_64609436_64613231_64613415_64615337_64615489_64636392
transcript_23400.known	chr13	+	2519	13	FSM	ENSMUSG00000021457.15	ENSMUST00000118756.8	2519	13	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	27.5650745207288	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATCTCTGAGCCAATTTT	NA	False	NA	NA	False	ATTAAA	-31	NA	52737472	52797650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_52737642_52750993_52751091_52764831_52765289_52766330_52766492_52774836_52774976_52776715_52776798_52777280_52777313_52785692_52785781_52786923_52787102_52792073_52792284_52794640_52794831_52795900_52796042_52797075
transcript_23407.known	chr13	-	1320	10	FSM	ENSMUSG00000021460.18	ENSMUST00000021913.16	1320	10	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_3	77.7090172246741	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAAGTTATACCAAATGT	NA	False	NA	-14	True	AATAAA	-22	NA	53083697	52989154	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_52989588_52992121_52992170_52993593_52993645_52994912_52995101_53041276_53041334_53043138_53043232_53052685_53052773_53073036_53073125_53073234_53073303_53083490
transcript_23415.nnic	chr13	-	1193	8	NIC	ENSMUSG00000021460.18	novel	1320	10	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_4	139.021948054314	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAAGTTATACCAAATGT	NA	False	NA	-14	True	AATAAA	-22	NA	53083720	52989154	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_52989588_52992121_52992170_52993593_52993645_52994912_52995101_53052685_53052773_53073036_53073125_53073234_53073303_53083490
transcript_23421.known	chr13	-	1400	6	FSM	ENSMUSG00000021460.18	ENSMUST00000128380.8	1400	6	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_1	92.9399806326642	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAAATCTGAATGTTCTG	NA	False	NA	-3	True	AATAAA	-17	NA	53083684	53040463	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_53041334_53043138_53043232_53052685_53052773_53073036_53073125_53073234_53073303_53083490
transcript_23427.nnic	chr13	-	902	5	NNC	ENSMUSG00000021460.18	novel	1258	10	NA	NA	32865	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	125.449192902944	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAAGTTATACCAAATGT	NA	False	NA	-14	True	AATAAA	-22	NA	53034117	52989154	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_52989588_52992121_52992170_52993593_52993645_52994912_52995101_53033935
transcript_23428.known	chr13	-	1647	5	FSM	ENSMUSG00000021460.18	ENSMUST00000120535.8	1647	5	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	187.838361364233	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTCTTGGGTAGTGGTGT	NA	False	NA	NA	False	AATAAA	-13	NA	53083688	53049962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_53051169_53052685_53052773_53073036_53073125_53073234_53073303_53083490
transcript_2343.known	chr1	+	1569	8	FSM	ENSMUSG00000025958.15	ENSMUST00000185594.7	1569	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	31.6169678030836	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCTTTCTTATTTTTGTT	NA	False	NA	NA	False	AATGAA	-4	NA	64571803	64636854	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_64572064_64590007_64590130_64597661_64597809_64605375_64605477_64609292_64609436_64613231_64613415_64615337_64615489_64636392
transcript_23430.nnic	chr13	-	926	5	NNC	ENSMUSG00000021460.18	novel	3235	4	NA	NA	-3	3	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	201.986849819487	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTGGTCACAGTGCATT	NA	False	NA	NA	False	ATTAAA	-20	NA	53083720	53064242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_53064629_53066943_53067098_53073036_53073125_53073234_53073303_53083490
transcript_2344.known	chr1	+	8364	8	FSM	ENSMUSG00000025958.15	ENSMUST00000087366.11	8364	8	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_3	12.7375389286621	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTTTGTGTCTAGCTT	NA	False	NA	NA	False	NA	NA	NA	64571977	64643707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_64572180_64590007_64590130_64597661_64597809_64605375_64605477_64609292_64609436_64613231_64613415_64615337_64615489_64636392
transcript_23440.known	chr13	-	3235	4	FSM	ENSMUSG00000021460.18	ENSMUST00000110031.4	3235	4	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_1	164.004742478855	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTCTTGGTCACAGTGC	NA	False	NA	NA	False	ATTAAA	-17	NA	53083717	53064245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_53067098_53073036_53073125_53073234_53073303_53083490
transcript_23443.nnic	chr13	-	1188	7	NNC	ENSMUSG00000021464.16	novel	3730	9	NA	NA	115212	-7840	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_6	40.1787671952903	16	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGACGTACCCCCGTG	NA	False	NA	NA	False	AATAAA	-16	NA	53314482	53271192	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_53271417_53272726_53273042_53275699_53275828_53284952_53284984_53285785_53286074_53300669_53300748_53314358
transcript_23446.known	chr13	-	2606	15	FSM	ENSMUSG00000021468.9	ENSMUST00000021920.8	2606	15	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_11	13.0690864412232	322	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCTGTTTGGATAGCAG	1829	False	NA	-18	True	AATAAA	-27	NA	53531433	53486783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_53488014_53489376_53489451_53491643_53491762_53496207_53496263_53497163_53497261_53497814_53497911_53498836_53498945_53505636_53505727_53508186_53508317_53512796_53512930_53521347_53521421_53521901_53521996_53527364_53527460_53527997_53528106_53531328
transcript_23449.known	chr13	-	2453	2	FSM	ENSMUSG00000021469.10	ENSMUST00000021922.10	2453	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAAGTCTGTCCCAACTC	NA	False	NA	NA	False	ATTAAA	-18	NA	53627110	53620919	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_53622630_53626367
transcript_23456.nnic	chr13	+	1304	12	NNC	ENSMUSG00000021474.10	novel	2783	11	NA	NA	-19	-1564	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_6	341.21576509169	249	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACCCTTCTGGTAGATT	NA	False	NA	NA	False	NA	NA	NA	54225868	54260797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_54225952_54239467_54239643_54242907_54243079_54245241_54245341_54246391_54246468_54247019_54247106_54247571_54247638_54247872_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
transcript_23467.known	chr13	+	2783	11	FSM	ENSMUSG00000021474.10	ENSMUST00000021930.10	2783	11	0	0	0	0	multi-exon	FALSE	canonical	3	779	junction_1	55.358919787149	2096	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACTGTCTCTTACTTGTC	NA	False	NA	NA	False	AATAAA	-18	NA	54225887	54262361	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_54225952_54239467_54239643_54242907_54243079_54245241_54245341_54246391_54246468_54247019_54247106_54247872_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
transcript_2347.known	chr1	+	1287	7	FSM	ENSMUSG00000025958.15	ENSMUST00000171164.8	1287	7	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	32.4572368235841	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCCTCAAGAAATGTGCAG	NA	False	NA	NA	False	ATTAAA	-32	NA	64571955	64636730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_64572180_64597661_64597809_64605375_64605477_64609292_64609436_64613231_64613415_64615337_64615489_64636392
transcript_23481.nic	chr13	+	616	3	ISM	ENSMUSG00000021474.10	ENSMUST00000021930.10	2783	11	-19	19096	-19	-628	5prime_fragment	FALSE	canonical	3	779	junction_1	87.5	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAGAAGATATAGGTCAG	NA	False	NA	NA	False	CATAAA	-27	NA	54225868	54243265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_+_54225952_54239467_54239643_54242907
transcript_23487.known	chr13	-	2746	2	FSM	ENSMUSG00000113404.2	ENSMUST00000220818.2	2746	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAATTTTATGTGTTTGT	NA	False	NA	NA	False	AATATA	-12	NA	54481899	54463923	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_54466497_54481726
transcript_23489.known	chr13	-	2335	6	FSM	ENSMUSG00000025872.6	ENSMUST00000026990.6	2335	6	0	0	0	0	multi-exon	FALSE	canonical	3	501	junction_3	36.0699320764539	1690	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGTGTCTAAAGTTACTA	NA	False	NA	-3	True	AATAAA	-15	NA	54616662	54606649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_54608051_54611284_54611386_54611494_54611657_54613992_54614198_54615638_54615796_54616353
transcript_2349.known	chr1	+	1255	8	FSM	ENSMUSG00000025958.15	ENSMUST00000187811.7	1255	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	32.5174992135318	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGCCTGTCTTAGCTGC	NA	False	NA	NA	False	NA	NA	NA	64571967	64617375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_64572180_64590007_64590130_64597661_64597809_64605375_64605477_64609292_64609436_64613231_64613415_64615337_64615489_64617179
transcript_23490.known	chr13	-	465	2	FSM	ENSMUSG00000025872.6	ENSMUST00000135404.2	465	2	0	0	0	0	multi-exon	FALSE	canonical	3	549	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGAGGAAAAGCTAGTGTG	NA	False	NA	NA	False	NA	NA	NA	54616639	54615616	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_54615796_54616353
transcript_23491.known	chr13	-	385	1	FSM	ENSMUSG00000086567.2	ENSMUST00000140330.2	385	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACCTAGCAGTGAGTGGA	NA	False	NA	NA	False	AAAAAG	-7	NA	54647902	54647517	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_54647500_54647900
transcript_23492.known	chr13	+	4819	10	FSM	ENSMUSG00000043183.19	ENSMUST00000121401.8	4819	10	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	7.33333333333333	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTAGACTCCAGGGCTTCT	NA	False	NA	17	True	AATAAA	-17	NA	54651591	54699103	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_54651818_54671782_54674486_54676116_54676350_54676966_54677037_54684894_54685050_54687516_54687670_54689236_54689366_54694789_54694947_54695067_54695153_54698195
transcript_23493.known	chr13	-	2727	9	FSM	ENSMUSG00000025871.19	ENSMUST00000026989.15	2727	9	0	0	0	0	multi-exon	FALSE	canonical	3	520	junction_7	24.8696602308918	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTCTTGTCCATTCTG	NA	False	NA	NA	False	AATAAA	-26	NA	54713248	54699030	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54707010_54707138_54709505_54709685_54711997_54712086_54712327_54712435_54712994
transcript_23494.known	chr13	-	2502	8	FSM	ENSMUSG00000025871.19	ENSMUST00000153065.8	2502	8	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_6	177.014469603419	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAGGTCTGTCTTGTCCA	NA	False	NA	NA	False	AATAAA	-21	NA	54713116	54699035	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54707010_54707138_54709505_54709685_54712327_54712435_54712994
transcript_23497.known	chr13	-	946	5	FSM	ENSMUSG00000025871.19	ENSMUST00000153708.2	946	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_4	214.957408572024	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCCTAGGTAAATTATGC	NA	False	NA	NA	False	TTTAAA	-33	NA	54713146	54700208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54712994
transcript_23499.nic	chr13	+	1024	4	NIC	ENSMUSG00000025870.11	novel	1046	4	NA	NA	13	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	37.8623236946117	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATTTATTCACTTACTT	2687	False	NA	NA	False	TTTAAA	-10	NA	54722840	54727350	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_54723091_54723562_54723762_54726605_54726782_54726951
transcript_23500.known	chr13	+	1046	4	FSM	ENSMUSG00000025870.11	ENSMUST00000026988.11	1046	4	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_3	14.6363322667334	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCAGCAGGCTCAGTGCC	2674	False	NA	NA	False	NA	NA	NA	54722827	54728941	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_54723091_54723562_54723762_54726605_54726782_54728533
transcript_23501.known	chr13	+	654	3	FSM	ENSMUSG00000025870.11	ENSMUST00000156024.2	654	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	15	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATAGGATTGCATGGCATA	2706	False	NA	NA	False	NA	NA	NA	54722859	54726829	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_54723091_54723562_54723762_54726605
transcript_23503.known	chr13	-	1756	5	FSM	ENSMUSG00000025869.12	ENSMUST00000026987.12	1756	5	0	0	0	0	multi-exon	FALSE	canonical	3	1006	junction_4	30.4302481094059	2200	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAGATGCACTTTTATTT	NA	False	NA	-3	True	NA	NA	NA	54737903	54731997	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_54733238_54733632_54733740_54736410_54736481_54737475_54737585_54737673
transcript_23504.known	chr13	+	648	2	FSM	ENSMUSG00000025868.7	ENSMUST00000026986.7	648	2	0	0	0	0	multi-exon	FALSE	canonical	3	1416	junction_1	0	12153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTTCTTAATCTCATTCC	5978	False	NA	23	True	AATAAA	-27	NA	54738019	54738971	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_54738233_54738536
transcript_23508.known	chr13	-	2186	5	FSM	ENSMUSG00000047547.15	ENSMUST00000091609.11	2186	5	0	0	0	0	multi-exon	FALSE	canonical	3	406	junction_1	26.0708170182678	1075	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTTAAAGACTGTATTTTA	7405	False	NA	19	True	AATAAA	-41	NA	54759157	54740213	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_54741856_54746534_54746647_54746856_54746975_54754456_54754504_54758890
transcript_23509.known	chr13	-	1004	6	FSM	ENSMUSG00000047547.15	ENSMUST00000049575.8	1004	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	221.180830995817	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTAGTATCCTCATTTC	7457	False	NA	-35	True	NA	NA	NA	54759105	54741397	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_54741856_54744838_54744893_54746534_54746647_54746856_54746975_54754456_54754504_54758890
transcript_23514.known	chr13	+	1748	11	FSM	ENSMUSG00000025873.17	ENSMUST00000026991.16	1748	11	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_3	87.926617130423	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAATGAGGCTGACTTA	NA	False	NA	1	True	NA	NA	NA	54769636	54809399	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_54769717_54786062_54786132_54789231_54789310_54793057_54793135_54796104_54796244_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
transcript_23517.known	chr13	+	4322	11	FSM	ENSMUSG00000025873.17	ENSMUST00000126071.9	4322	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	132.701770900015	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAACCAGCTGTGGGTCTT	NA	False	NA	NA	False	ATTAAA	-22	NA	54769596	54811876	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_54769717_54786062_54786132_54789231_54789367_54793057_54793135_54796104_54796244_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
transcript_2352.known	chr1	-	2030	4	FSM	ENSMUSG00000025956.11	ENSMUST00000114079.9	2030	4	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_3	6.34209919681348	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCAGTGTTGTCTTCTG	NA	False	NA	0	True	ATTAAA	-20	NA	64656401	64645631	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_64647297_64654256_64654369_64655431_64655604_64656320
transcript_23529.nic	chr13	+	1873	10	NIC	ENSMUSG00000025873.17	novel	4322	11	NA	NA	-56	111	combination_of_known_junctions	TRUE	canonical	0	0	junction_3	175.481418945317	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCGCATCCTTTGCCACT	NA	False	NA	23	True	AATAAA	-16	NA	54769540	54809510	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_54769717_54786062_54786132_54789231_54789367_54793057_54793135_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
transcript_23538.known	chr13	-	3941	11	FSM	ENSMUSG00000034928.17	ENSMUST00000177950.8	3941	11	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_10	160.927934181732	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCCTCTGGCTGCTCTCT	NA	False	NA	-5	True	AATAAA	-28	NA	54835621	54827211	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831030_54831407_54831576_54831773_54831900_54832150_54832302_54835306
transcript_23539.known	chr13	-	1689	11	FSM	ENSMUSG00000034928.17	ENSMUST00000128257.8	1689	11	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_10	190.55762907845	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCAAAGACTCCTTCCCCA	NA	False	NA	NA	False	NA	NA	NA	54836072	54829377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831030_54831407_54831576_54831773_54831900_54832150_54832302_54835843
transcript_23540.known	chr13	-	698	5	FSM	ENSMUSG00000034928.17	ENSMUST00000129881.8	698	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	256.691449020025	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACCGCCAGCCCCACCGC	NA	False	NA	NA	False	NA	NA	NA	54835467	54830940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_54831030_54831407_54831576_54831773_54831903_54832150_54832302_54835306
transcript_23541.nnic	chr13	-	1474	7	NNC	ENSMUSG00000034891.14	novel	1351	6	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	42.2679941957663	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGCGCCGCCTAGGCAGG	NA	False	NA	-1	True	AATAAA	-16	NA	54914417	54906672	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_54907355_54907680_54907771_54910455_54910575_54910734_54910774_54913375_54913506_54913637_54913752_54914117
transcript_23547.known	chr13	-	1351	6	FSM	ENSMUSG00000034891.14	ENSMUST00000036825.14	1351	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	35.7636687156114	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGCGCCGCCTAGGCAGG	NA	False	NA	-1	True	AATAAA	-16	NA	54914408	54906672	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_54907355_54907680_54907771_54910455_54910575_54910734_54910774_54913375_54913506_54914117
transcript_2355.known	chr1	-	2666	3	FSM	ENSMUSG00000025956.11	ENSMUST00000053469.2	2666	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	2	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTACCTGTCAGTGTTG	NA	False	NA	-7	True	ATTAAA	-13	NA	64656327	64645638	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_64647297_64654256_64654369_64655431
transcript_23556.known	chr13	+	712	6	FSM	ENSMUSG00000025875.15	ENSMUST00000163796.8	712	6	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	159.188441791482	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTGACATCAAGGCGGTG	NA	False	NA	NA	False	NA	NA	NA	54937275	54944000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_54937495_54941007_54941179_54942865_54942992_54943223_54943272_54943778_54943896_54943969
transcript_23559.known	chr13	+	718	7	FSM	ENSMUSG00000025875.15	ENSMUST00000145574.2	718	7	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_6	112.929796284634	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTGGTTTATGTTCACCG	NA	False	NA	17	True	AATAAA	-18	NA	54940683	54944588	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_54940700_54941007_54941179_54942865_54942992_54943223_54943272_54943778_54943896_54943969_54944032_54944410
transcript_23560.known	chr13	+	1048	9	FSM	ENSMUSG00000025875.15	ENSMUST00000131692.9	1048	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	130.695674660641	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACAGTGGTGGTTTATG	NA	False	NA	10	True	AATAAA	-11	NA	54937215	54944581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_54937495_54940421_54940473_54940552_54940700_54941007_54941179_54942865_54942992_54943223_54943272_54943778_54943896_54943969_54944032_54944534
transcript_23561.known	chr13	+	487	2	FSM	ENSMUSG00000085896.3	ENSMUST00000154615.3	487	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGGTGAGAGTCAACTT	NA	False	NA	NA	False	AATAAA	-23	NA	55061047	55062292	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_55061126_55061883
transcript_23566.known	chr13	-	2936	15	FSM	ENSMUSG00000025878.17	ENSMUST00000127195.8	2936	15	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_10	39.2030949423795	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTTGTCTGTTTAAACC	NA	False	NA	NA	False	AATAGA	-22	NA	55248113	55175692	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_55176532_55177228_55177272_55178765_55178830_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55223070_55223804_55224110_55224221_55225215_55225341_55233422_55233508_55240939_55241095_55248009
transcript_2357.known	chr1	-	1505	1	FSM	ENSMUSG00000087213.3	ENSMUST00000186325.2	1505	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7958	False	NA	NA	False	NA	NA	NA	64729787	64728282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_64728300_64729800
transcript_23571.known	chr13	-	1678	13	FSM	ENSMUSG00000025878.17	ENSMUST00000099496.4	1678	13	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_9	37.4398591818339	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAATCTTATTTCAATAG	NA	False	NA	NA	False	AATATA	-12	NA	55248113	55176107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_55176532_55177228_55177272_55178765_55178830_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55225215_55225341_55233422_55233508_55240939_55241095_55248009
transcript_2358.known	chr1	-	711	2	FSM	ENSMUSG00000087213.3	ENSMUST00000150749.2	711	2	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_1	0	1140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAACAGTGCTACCTATGT	7927	False	NA	-16	True	AATAAA	-21	NA	64729818	64719029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_64719545_64729622
transcript_23583.known	chr13	-	2735	4	FSM	ENSMUSG00000025878.17	ENSMUST00000133187.2	2735	4	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_3	8.65383665716478	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAGTTAAAAAAAGAG	NA	False	NA	NA	False	TATAAA	-3	NA	55248112	55222948	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_55225341_55233422_55233508_55240939_55241095_55248009
transcript_23588.known	chr13	+	3333	7	FSM	ENSMUSG00000021481.12	ENSMUST00000021937.12	3333	7	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_4	9.82202739877171	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATCCGATGTGTGCGCT	19	False	NA	11	True	NA	NA	NA	55253139	55282638	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_55253332_55260848_55260953_55261490_55261584_55263292_55263438_55270142_55270329_55278346_55278441_55280119
transcript_23589.known	chr13	+	1112	6	FSM	ENSMUSG00000021481.12	ENSMUST00000162476.8	1112	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	25.663982543635	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGGCAGCTTTGTGTAGA	25	False	NA	NA	False	NA	NA	NA	55253145	55280568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_55253332_55260848_55260953_55261490_55261584_55270142_55270329_55278346_55278441_55280119
transcript_23590.known	chr13	+	3324	18	FSM	ENSMUSG00000005320.10	ENSMUST00000005452.6	3324	18	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	3.40364144505634	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCTGTGTGGCAGGGTGT	NA	False	NA	NA	False	AATAAA	-20	NA	55300452	55316572	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_55300741_55303250_55303385_55304043_55304308_55304398_55304480_55304586_55304754_55306906_55307031_55307735_55307927_55308061_55308201_55308928_55309123_55309206_55309353_55309434_55309557_55313702_55313814_55313908_55314100_55314670_55314794_55314900_55314972_55315212_55315351_55315618_55315725_55315838
transcript_23592.nnic	chr13	+	1072	3	NNC	ENSMUSG00000005320.10	novel	3324	18	NA	NA	11051	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9.5	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCTGTGTGGCAGGGTGT	NA	False	NA	NA	False	AATAAA	-20	NA	55314980	55316572	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_55315213_55315618_55315725_55315838
transcript_23598.nic	chr13	+	937	6	NIC	ENSMUSG00000021488.9	novel	12784	23	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_5	91.9469412215545	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGTTGTCTTTTTTTTC	NA	False	NA	NA	False	AATACA	-15	NA	55357570	55388660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_55357689_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55388354
transcript_23600.nnic	chr13	+	1002	6	NNC	ENSMUSG00000021488.9	novel	9905	21	NA	NA	-383	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	112.975395551421	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGTTGTCTTTTTTTTC	NA	False	NA	NA	False	AATACA	-15	NA	55358164	55388660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_55358348_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55388354
transcript_23601.known	chr13	+	1149	6	FSM	ENSMUSG00000021488.9	ENSMUST00000224156.2	1149	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	114.053671576149	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTTGTTGTCTTTTTTTT	NA	False	NA	NA	False	AATACA	-14	NA	55358547	55388659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_55358879_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55388354
transcript_23603.nnic	chr13	+	911	6	NNC	ENSMUSG00000021488.9	novel	1001	6	NA	NA	-67	0	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	108.536445491825	53	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGTTGTCTTTTTTTTC	NA	False	NA	NA	False	AATACA	-15	NA	55359564	55388660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_55359657_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55388354
transcript_23605.known	chr13	+	1001	6	FSM	ENSMUSG00000021488.9	ENSMUST00000224918.2	1001	6	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_5	91.9469412215545	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGTTGTCTTTTTTTTC	NA	False	NA	NA	False	AATACA	-15	NA	55359631	55388660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_55359814_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55388354
transcript_23606.known	chr13	+	852	6	FSM	ENSMUSG00000021488.9	ENSMUST00000224693.2	852	6	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	114.325150338847	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGTTGTCTTTTTTTTC	NA	False	NA	NA	False	AATACA	-15	NA	55359887	55388660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_55359921_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55388354
transcript_23607.nic	chr13	+	616	5	NIC	ENSMUSG00000021488.9	novel	12784	23	NA	NA	-24	-1999	combination_of_known_junctions	FALSE	canonical	3	116	junction_1	64.355943781441	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGATATAGGCATAAGGTAAA	NA	False	NA	29	True	AAGAAA	-3	NA	55357570	55386660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_55357689_55361016_55361131_55361873_55361964_55381707_55381844_55386502
transcript_23629.known	chr13	+	12784	23	FSM	ENSMUSG00000021488.9	ENSMUST00000099490.3	12784	23	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	35.1453887033198	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCCCTTGCCCTGTGTTTT	NA	False	NA	15	True	AGTAAA	-18	NA	55357594	55466138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_55357689_55361016_55361964_55381707_55381844_55386502_55386676_55393330_55395891_55408156_55408282_55409356_55409628_55411145_55411256_55416260_55416337_55424335_55424455_55425344_55425489_55430471_55430596_55437867_55438069_55438943_55439124_55441370_55441528_55443799_55444006_55446376_55446490_55447503_55447774_55449539_55449657_55450651_55450794_55454748_55454856_55458149_55458355_55459931
transcript_23630.known	chr13	+	1770	3	FSM	ENSMUSG00000021488.9	ENSMUST00000225194.2	1770	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	126.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATTAATCTTTTGAG	NA	False	NA	NA	False	NA	NA	NA	55359882	55363491	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_55359921_55361016_55361131_55361873
transcript_23633.known	chr13	-	368	2	FSM	ENSMUSG00000114359.2	ENSMUST00000224833.2	368	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGTAGTTTTGTAAGGGC	NA	False	NA	NA	False	NA	NA	NA	55402214	55401037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_55401291_55402099
transcript_23658.known	chr13	+	2644	5	FSM	ENSMUSG00000021486.8	ENSMUST00000021942.8	2644	5	0	0	0	0	multi-exon	FALSE	canonical	3	1299	junction_2	62.1248742453456	16845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGGAGTCAGATAGCTT	4034	False	NA	18	True	NA	NA	NA	55468312	55473085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_55470095_55470665_55470892_55472143_55472258_55472339_55472419_55472642
transcript_23660.known	chr13	-	1327	6	FSM	ENSMUSG00000021485.15	ENSMUST00000021941.8	1327	6	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_2	5.62138772902208	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCGTACAGTCTATCACC	6155	False	NA	-7	True	NA	NA	NA	55477571	55472980	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_55473712_55473825_55474010_55476182_55476298_55476426_55476457_55477081_55477188_55477410
transcript_2367.nnic	chr1	+	679	2	Antisense	novelGene_ENSMUSG00000084416.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	852	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGTGATTTCTTGTTGG	3227	False	NA	NA	False	AAAAAG	-2	NA	65033061	65033794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr1_+_65033443_65033496
transcript_23688.known	chr13	-	1742	4	FSM	ENSMUSG00000021485.15	ENSMUST00000146181.8	1742	4	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_2	6.23609564462324	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTTCCTGTCCATGGTTT	6180	False	NA	-3	True	ATTAAA	-12	NA	55477546	55473294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_55473712_55473825_55474010_55476182_55477188_55477410
transcript_23692.known	chr13	-	1168	8	FSM	ENSMUSG00000034789.9	ENSMUST00000035242.9	1168	8	0	0	0	0	multi-exon	FALSE	canonical	3	320	junction_3	95.4118890465364	208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGTGTGCACTGGGTG	6442	False	NA	-22	True	AATAAA	-14	NA	55469758	55467697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_55468028_55468124_55468188_55468315_55468367_55468557_55468658_55468739_55468808_55468914_55468994_55469202_55469272_55469350
transcript_23693.known	chr13	+	1204	4	FSM	ENSMUSG00000021486.8	ENSMUST00000224220.2	1204	4	0	0	0	0	multi-exon	FALSE	canonical	3	1299	junction_2	69.7726466620138	658	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTTCTGGAGTCAGATAG	5553	False	NA	15	True	NA	NA	NA	55469831	55473082	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_55470095_55470665_55470892_55472143_55472419_55472642
transcript_23698.known	chr13	-	4315	8	FSM	ENSMUSG00000021484.9	ENSMUST00000021940.8	4315	8	0	0	0	0	multi-exon	FALSE	canonical	3	2192	junction_4	110.260729960528	3003	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGAGTTGTGTGCTCTGT	2839	False	NA	-3	True	NA	NA	NA	55510596	55491645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_55494851_55496127_55496248_55498968_55499084_55499192_55499355_55499523_55499604_55500758_55500877_55509933_55510053_55510200
transcript_23699.known	chr13	+	1846	10	FSM	ENSMUSG00000052087.15	ENSMUST00000135851.2	1846	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	1.39664500999739	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCATGAGGTGTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	55526981	55532499	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_55527260_55527392_55527505_55527817_55527931_55528712_55528917_55530657_55530735_55530930_55531058_55531147_55531230_55531337_55531385_55531466_55531582_55531808
transcript_2370.nnic	chr1	+	677	2	Antisense	novelGene_ENSMUSG00000084416.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	693	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGTGATTTCTTGTTGG	3231	False	NA	NA	False	AAAAAG	-2	NA	65033065	65033794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr1_+_65033173_65033224
transcript_23700.known	chr13	+	1359	3	FSM	ENSMUSG00000034686.9	ENSMUST00000046533.9	1359	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGCGGAGGGGGATACCAG	2146	False	NA	NA	False	AATAAA	-22	NA	55612079	55620967	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_55612228_55619600_55620250_55620405
transcript_23701.known	chr13	-	2940	14	FSM	ENSMUSG00000034675.18	ENSMUST00000109923.9	2940	14	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_13	5.80246835866034	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCGGGCCTGCTGCTCTGG	NA	False	NA	NA	False	AATAAA	-14	NA	55635924	55621241	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_55622107_55622268_55622372_55622672_55623350_55623958_55624130_55625363_55625494_55625589_55625650_55629161_55629226_55629351_55629504_55629725_55629804_55629963_55630111_55630225_55630301_55630504_55630618_55631199_55631256_55635675
transcript_23702.known	chr13	-	2378	14	FSM	ENSMUSG00000034675.18	ENSMUST00000109921.9	2378	14	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	11.9649389180894	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTGTAGCTTAGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	55635874	55621756	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_55622107_55622268_55622375_55622672_55623350_55623958_55624130_55625363_55625494_55625589_55625650_55629161_55629226_55629351_55629504_55629725_55629804_55629963_55630111_55630225_55630301_55630504_55630618_55631199_55631256_55635675
transcript_23707.known	chr13	-	1697	13	FSM	ENSMUSG00000021493.16	ENSMUST00000046246.13	1697	13	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_4	33.4015967682185	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTCTGTGCCTCCCCGC	NA	False	NA	-7	True	AATAAA	-15	NA	55661259	55646228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_55646548_55646706_55646823_55646913_55647035_55652470_55652652_55653746_55653982_55654118_55654181_55655142_55655180_55655300_55655438_55656020_55656140_55656592_55656624_55656704_55656857_55660124_55660232_55661179
transcript_23708.known	chr13	-	1006	8	FSM	ENSMUSG00000021493.16	ENSMUST00000069968.13	1006	8	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	27.1751687376246	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGCCTCTGTCTCCCA	NA	False	NA	-2	True	AATAAA	-17	NA	55661251	55654585	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_55654937_55655142_55655180_55655300_55655438_55656020_55656140_55656592_55656624_55656704_55656857_55660124_55660232_55661179
transcript_23709.known	chr13	-	899	8	FSM	ENSMUSG00000021493.16	ENSMUST00000069929.13	899	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	61.7060179647109	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTTGCCTCTGTCTCCC	NA	False	NA	-3	True	AATAAA	-16	NA	55661247	55654586	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_55654937_55655142_55655180_55655300_55655438_55655676_55655694_55656592_55656624_55656704_55656857_55660124_55660232_55661179
transcript_23714.known	chr13	-	2199	17	FSM	ENSMUSG00000021494.10	ENSMUST00000224765.2	2199	17	0	0	0	0	multi-exon	FALSE	canonical	3	642	junction_9	44.9861089671023	488	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTTCTTCCTCTCTCACC	NA	False	NA	-5	True	ATTAAA	-21	NA	55684471	55678228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_55678545_55678993_55679105_55679190_55679263_55679347_55679498_55679644_55679742_55679850_55679923_55680160_55680293_55680811_55680975_55681764_55681902_55681975_55682130_55682228_55682302_55683101_55683239_55683371_55683433_55683542_55683618_55683698_55683859_55684108_55684220_55684293
transcript_2372.nnic	chr1	+	672	2	Antisense	novelGene_ENSMUSG00000084416.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	737	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGTGATTTCTTGTTGG	3231	False	NA	NA	False	AAAAAG	-2	NA	65033065	65033794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr1_+_65033221_65033277
transcript_23732.known	chr13	+	1420	5	FSM	ENSMUSG00000058569.9	ENSMUST00000109905.5	1420	5	0	0	0	0	multi-exon	FALSE	canonical	3	616	junction_1	31.3847096529504	5012	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTCGTGGTTACTCTTTT	NA	False	NA	NA	False	NA	NA	NA	55740981	55745510	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_55741171_55741313_55741415_55742517_55742644_55743280_55743428_55744653
transcript_23734.known	chr13	+	2130	6	FSM	ENSMUSG00000021504.15	ENSMUST00000064701.8	2130	6	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_4	8.85437744847146	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACACTGGCAAGGAACTGG	NA	False	NA	5	True	AATAAA	-18	NA	55747877	55758255	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_55748006_55751832_55752196_55755009_55755236_55756154_55756239_55756510_55756616_55757031
transcript_2374.nnic	chr1	-	688	2	Genic_Genomic	ENSMUSG00000084416.4	novel	654	1	NA	NA	-31	43	multi-exon	FALSE	canonical	0	0	junction_1	0	928	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-30	NA	65033794	65033066	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr1_-_65033407_65033446
transcript_23746.known	chr13	+	1382	4	FSM	ENSMUSG00000021501.5	ENSMUST00000021963.5	1382	4	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_2	4.49691252107735	391	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAATAGAAGTCTGTACATT	NA	False	NA	NA	False	AATAAA	-21	NA	55770817	55780224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_55771070_55772523_55772985_55776389_55776456_55779621
transcript_2375.known	chr1	-	654	1	FSM	ENSMUSG00000084416.4	ENSMUST00000120360.2	654	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	151042	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGCTCCAATAAACCTCAC	NA	False	NA	NA	False	NA	NA	NA	65033763	65033109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_65033100_65033800
transcript_2376.known	chr1	-	1761	10	FSM	ENSMUSG00000025955.14	ENSMUST00000069142.12	1761	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.993807989999907	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATCATTTCAAATATTTT	8363	False	NA	NA	False	AATAAA	-17	NA	65071918	65051847	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_65052469_65053835_65053919_65055225_65055392_65055823_65055934_65060541_65060665_65061077_65061156_65063821_65063939_65064721_65064890_65069726_65069848_65071744
transcript_23768.known	chr13	+	1527	5	FSM	ENSMUSG00000021497.11	ENSMUST00000021959.11	1527	5	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_2	13.4257215820976	1728	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAAAGTGGTTTCGCTTGT	NA	False	NA	18	True	AATAAA	-14	NA	55862462	55874040	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_55862658_55865604_55866081_55869391_55869556_55872320_55872452_55873479
transcript_23774.known	chr13	+	546	4	FSM	ENSMUSG00000021496.13	ENSMUST00000124968.8	546	4	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_3	31.7210060089875	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAGTTATTTGTCATTA	NA	False	NA	15	True	AATACA	-18	NA	55875180	55924643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_55875288_55880748_55880881_55923179_55923261_55924417
transcript_23776.nnic	chr13	+	364	3	NNC	ENSMUSG00000021496.13	novel	544	4	NA	NA	-5	-36253	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_2	178.5	48	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCACATTTGTAATTTGCT	NA	False	NA	27	True	ATTAAA	-33	NA	55875175	55888388	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_55875288_55880748_55880881_55888268
transcript_2378.known	chr1	-	631	3	FSM	ENSMUSG00000070870.7	ENSMUST00000087359.6	631	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	7	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGAGTTCTCTGTTCCTTTC	NA	False	NA	NA	False	AATAAA	-28	NA	65090308	65087712	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_65088056_65089928_65090172_65090263
transcript_23782.known	chr13	-	2046	9	FSM	ENSMUSG00000015937.16	ENSMUST00000016081.13	2046	9	0	0	0	0	multi-exon	FALSE	canonical	3	557	junction_5	233.718279933342	635	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCCGTGTTTTGTGTTAC	5905	False	NA	-5	True	AGTAAA	-18	NA	56283444	56221431	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_56222206_56230932_56231108_56232008_56232099_56237570_56237671_56243936_56244048_56252114_56252313_56252701_56252809_56276089_56276295_56283158
transcript_23784.nic	chr13	-	1938	9	NIC	ENSMUSG00000015937.16	novel	2046	9	NA	NA	-354	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_8	412.140885347474	586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGACTGGCCGTGTTTTGTGT	5551	False	NA	-8	True	AGTAAA	-15	NA	56283798	56221434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_56222206_56230932_56231108_56232008_56232099_56237570_56237671_56243936_56244045_56252114_56252313_56252701_56252809_56276089_56276295_56283614
transcript_23789.known	chr13	-	889	6	FSM	ENSMUSG00000015937.16	ENSMUST00000139511.8	889	6	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	455.76511494409	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAAGACCTGGAAATGAG	6006	False	NA	-13	True	AATAAA	-15	NA	56283343	56243368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_56243455_56243936_56244045_56252114_56252313_56252701_56252809_56276089_56276295_56283158
transcript_2379.nnic	chr1	-	851	3	NNC	ENSMUSG00000070870.7	novel	631	3	NA	NA	-680	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	4.5	68	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACAGAGTTCTCTGTTCCT	9689	False	NA	NA	False	AATAAA	-25	NA	65090988	65087715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_65088056_65089928_65090172_65090720
transcript_23790.known	chr13	-	1827	4	FSM	ENSMUSG00000021508.12	ENSMUST00000021970.11	1827	4	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_2	5.8878405775519	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTACTCCTGGGCTGTT	NA	False	NA	2	True	AATAAA	-22	NA	56444364	56436455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_56437621_56440273_56440388_56443638_56443745_56443922
transcript_23793.known	chr13	+	3374	8	FSM	ENSMUSG00000021509.6	ENSMUST00000021971.6	3374	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_7	3.84919816723071	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCGTGCATCTGTCTTACC	NA	False	NA	36	True	AATAAA	-26	NA	56586167	56622052	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_56586349_56590601_56590646_56596810_56596883_56598833_56599093_56611315_56611559_56612767_56612902_56618162_56618294_56619742
transcript_23794.known	chr13	+	1965	7	FSM	ENSMUSG00000035509.18	ENSMUST00000045428.7	1965	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	3.77123616632825	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATATAATTATTATGTAT	NA	False	NA	NA	False	NA	NA	NA	56670320	56685599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_56670436_56671322_56671417_56673454_56673586_56674727_56675095_56675530_56675654_56680105_56680278_56684636
transcript_23795.known	chr13	+	1963	6	FSM	ENSMUSG00000035509.18	ENSMUST00000121871.8	1963	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	3.42928563989645	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATACTGTTGAAAATCAA	NA	False	NA	NA	False	AATACA	-9	NA	56670303	56685711	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_56670436_56671322_56671417_56674727_56675095_56675530_56675654_56680105_56680278_56684636
transcript_23796.known	chr13	+	3507	4	FSM	ENSMUSG00000035509.18	ENSMUST00000124981.2	3507	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	0.816496580927726	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	56670325	56677899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_56670436_56671322_56671417_56673454_56673586_56674727
transcript_23797.known	chr13	+	798	3	FSM	ENSMUSG00000035509.18	ENSMUST00000121095.8	798	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	2	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGTTTCTCACTGGGCTG	NA	False	NA	NA	False	AATAAA	-26	NA	56670284	56675280	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_56670436_56671322_56671417_56674727
transcript_23798.known	chr13	+	2714	17	FSM	ENSMUSG00000035493.11	ENSMUST00000045173.10	2714	17	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	6.48917367620871	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTGTGCTAGCTGCGTG	9425	False	NA	NA	False	AATAAA	-16	NA	56757398	56787171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_56757594_56762052_56762152_56771372_56771438_56773012_56773174_56773462_56773628_56773846_56773994_56775726_56775869_56777430_56777644_56778356_56778495_56779042_56779189_56779862_56780000_56780671_56780803_56783378_56783504_56784378_56784482_56784950_56785031_56785833_56785859_56786529
transcript_23800.known	chr13	+	6584	7	FSM	ENSMUSG00000021540.17	ENSMUST00000069557.14	6584	7	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	16.5495887830752	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGTCTTTGTTTATTTTC	NA	False	NA	13	True	AATAAA	-17	NA	56850822	56890190	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_56850945_56871241_56871810_56875216_56875469_56876322_56876443_56880662_56880885_56883612_56883870_56885147
transcript_23801.known	chr13	+	4534	7	FSM	ENSMUSG00000021540.17	ENSMUST00000109874.2	4534	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	31.6052035096895	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAAAAAGAAAAGTC	NA	False	NA	NA	False	NA	NA	NA	56851480	56888117	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_56851626_56871241_56871810_56875216_56875469_56876322_56876443_56880662_56880885_56883612_56883870_56885147
transcript_23802.known	chr13	+	1398	5	FSM	ENSMUSG00000021540.17	ENSMUST00000138677.8	1398	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	17.4696164811939	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAACTAGTCTTCTCTTT	NA	False	NA	NA	False	AATAAA	-2	NA	56850851	56881027	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_56850945_56871241_56871810_56875216_56875469_56876322_56876443_56880662
transcript_23803.nnic	chr13	+	1261	5	NNC	ENSMUSG00000021540.17	novel	1398	5	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	35.856484769146	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAACTAGTCTTCTCTTT	NA	False	NA	NA	False	AATAAA	-2	NA	56850819	56881027	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_56850945_56871241_56871810_56875385_56875469_56876322_56876443_56880662
transcript_23808.known	chr13	-	3483	12	FSM	ENSMUSG00000021541.15	ENSMUST00000022023.13	3483	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2.10469761868913	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGAGCCTGGGGGTCTGT	NA	False	NA	NA	False	AATAAA	-9	NA	57043550	56920925	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_56921747_56923929_56924006_56930323_56930405_56931435_56931658_56937414_56937611_56952325_56952591_56958196_56958431_56970237_56970455_56979098_56979264_57008702_57008886_57035151_57035930_57043305
transcript_2381.known	chr1	-	690	2	FSM	ENSMUSG00000070870.7	ENSMUST00000161960.2	690	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACAGAGTTCTCTGTTCCT	NA	False	NA	NA	False	AATAAA	-25	NA	65090278	65087715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_65088056_65089928
transcript_23812.known	chr13	+	689	5	FSM	ENSMUSG00000050002.15	ENSMUST00000225236.2	689	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	87.1177364260573	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACTCGTTCATAGCAGAG	NA	False	NA	NA	False	NA	NA	NA	58305496	58311589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_58305551_58305675_58305850_58307690_58307722_58307965_58308053_58311246
transcript_23815.known	chr13	+	764	5	FSM	ENSMUSG00000050002.15	ENSMUST00000051490.15	764	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	87.5928079239386	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATCGGGCTGTACTGTAAA	NA	False	NA	2	True	NA	NA	NA	58305462	58311760	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_58305551_58307690_58307722_58307965_58308053_58310651_58310696_58311246
transcript_23816.known	chr13	+	1462	4	FSM	ENSMUSG00000050002.15	ENSMUST00000109868.4	1462	4	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_3	23.6220236220354	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCTGTCTTTATACTTTA	NA	False	NA	NA	False	NA	NA	NA	58305467	58312507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_58305551_58307690_58307722_58307965_58308053_58311246
transcript_23817.known	chr13	-	1523	12	FSM	ENSMUSG00000021552.8	ENSMUST00000091579.6	1523	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	54.7743681383791	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTGATCTTCACTGTC	NA	False	NA	2	True	AATAAA	-22	NA	58422002	58381159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_58381473_58384330_58384409_58384800_58384872_58386462_58386527_58389467_58389570_58391615_58391769_58398944_58398968_58403560_58403685_58407247_58407326_58411011_58411156_58411755_58412014_58421887
transcript_2382.known	chr1	-	613	3	FSM	ENSMUSG00000067299.12	ENSMUST00000045028.15	613	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	4.5	551	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAAAATATTTTCTGTGT	7620	False	NA	-34	True	NA	NA	NA	65102611	65101030	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_65101342_65102217_65102461_65102552
transcript_23822.known	chr13	-	627	5	FSM	ENSMUSG00000021552.8	ENSMUST00000225098.2	627	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	73.8761632734132	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTTTAGTTTTTCATCAG	9790	False	NA	-47	True	NA	NA	NA	58391765	58381208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_58381473_58384330_58384409_58384800_58384872_58386462_58386527_58391615
transcript_23826.known	chr13	-	3051	4	FSM	ENSMUSG00000021550.7	ENSMUST00000022032.7	3051	4	0	0	0	0	multi-exon	TRUE	canonical	3	402	junction_2	21.2289111041209	191	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGGCTAGATTTTGATAC	NA	False	NA	NA	False	NA	NA	NA	58533039	58527630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_58529824_58530221_58530418_58531963_58532224_58532637
transcript_23828.known	chr13	-	2970	18	FSM	ENSMUSG00000021546.19	ENSMUST00000116403.9	2970	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_17	2601.31267501967	6727	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGTTTTGTGTGTGTGTG	3924	False	NA	-8	True	AATACA	-15	NA	58551157	58538955	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877_58549932_58550206_58550327_58551084
transcript_2384.known	chr1	-	612	3	FSM	ENSMUSG00000025952.16	ENSMUST00000114064.3	612	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	8	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGACTTCTGTTATTCTT	856	False	NA	0	True	AATAAA	-26	NA	65112680	65110689	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_65111034_65112320_65112564_65112655
transcript_23847.known	chr13	+	2447	4	FSM	ENSMUSG00000035367.10	ENSMUST00000225815.2	2447	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	162.181653983701	451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATATGTGAAAGAATGTT	NA	False	NA	16	True	AATAAA	-29	NA	58550513	58557906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_58550604_58552384_58552470_58554815_58554905_58555723
transcript_2385.known	chr1	-	634	3	FSM	ENSMUSG00000073658.5	ENSMUST00000027090.9	634	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGCCTTTCTTTTAATC	1867	False	NA	NA	False	AATAAA	-32	NA	65121447	65119377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_65119727_65121073_65121317_65121405
transcript_23850.known	chr13	+	3594	3	FSM	ENSMUSG00000035367.10	ENSMUST00000225828.2	3594	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	177.5	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTGCCGTGGTCATGG	NA	False	NA	5	True	NA	NA	NA	58550061	58558958	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_58550332_58554815_58554905_58555723
transcript_23851.known	chr13	+	3855	3	FSM	ENSMUSG00000035367.10	ENSMUST00000042450.10	3855	3	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	108.5	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCGTGGTCATGGTGTC	NA	False	NA	9	True	NA	NA	NA	58550076	58558962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_58550604_58554815_58554905_58555723
transcript_23853.known	chr13	-	2754	16	FSM	ENSMUSG00000021546.19	ENSMUST00000224182.2	2754	16	0	0	0	0	multi-exon	FALSE	canonical	3	4568	junction_3	976.692573035253	6534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACGTGTGCCCAATTTGA	4751	False	NA	-19	True	AATAAA	-19	NA	58550330	58539048	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
transcript_23854.known	chr13	-	2676	16	FSM	ENSMUSG00000021546.19	ENSMUST00000043269.14	2676	16	0	0	0	0	multi-exon	FALSE	canonical	3	4513	junction_1	1087.93485507584	6175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATGACGTGTGCCCAAT	4765	False	NA	-23	True	AATAAA	-15	NA	58550316	58539052	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_58540231_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
transcript_23855.known	chr13	-	2704	16	FSM	ENSMUSG00000021546.19	ENSMUST00000225674.2	2704	16	0	0	0	0	multi-exon	FALSE	canonical	3	1429	junction_15	1661.36162897252	6057	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATGACGTGTGCCCAAT	5126	False	NA	-23	True	AATAAA	-15	NA	58549955	58539052	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
transcript_23856.known	chr13	-	2626	15	FSM	ENSMUSG00000021546.19	ENSMUST00000177019.8	2626	15	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_9	1943.30427759168	5686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATGACGTGTGCCCAAT	4803	False	NA	-23	True	AATAAA	-15	NA	58550278	58539052	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
transcript_23857.known	chr13	-	775	7	FSM	ENSMUSG00000021546.19	ENSMUST00000177377.8	775	7	0	0	0	0	multi-exon	FALSE	canonical	3	1429	junction_6	2367.11782671576	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAGTTTTTTAAGGTGGT	5157	False	NA	NA	False	NA	NA	NA	58549924	58543702	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
transcript_23858.known	chr13	-	1053	5	FSM	ENSMUSG00000021546.19	ENSMUST00000176558.2	1053	5	0	0	0	0	multi-exon	FALSE	canonical	3	1429	junction_4	2740.58628535939	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAATAGGCTACCTTAAAT	5151	False	NA	NA	False	AATAAA	-18	NA	58549930	58544850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
transcript_23859.known	chr13	-	662	6	FSM	ENSMUSG00000021553.15	ENSMUST00000224906.2	662	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.32664991614216	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCTCAGTTTTGTTTGGG	3618	False	NA	NA	False	AATAAA	-16	NA	58758691	58725563	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_58725587_58726218_58726409_58728328_58728421_58730427_58730514_58735995_58736086_58758510
transcript_2387.nnic	chr1	-	996	5	NNC	ENSMUSG00000100846.2	novel	733	7	NA	NA	9284	230	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	14.1133801762724	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTCTTGCTTATCTTCA	9959	False	NA	NA	False	AATAAA	-27	NA	65149433	65139547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_65139885_65142139_65142383_65148620_65148736_65149035_65149124_65149220
transcript_23876.nnic	chr13	-	702	3	Antisense	novelGene_ENSMUSG00000055254.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	3.5	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CGGTGCACAATTTAAAAAAA	NA	False	NA	NA	False	ATTAAA	-2	NA	59059871	59056455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr13_-_59056776_59058134_59058376_59059730
transcript_23880.nnic	chr13	-	823	3	Antisense	novelGene_ENSMUSG00000055254.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	1	118	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CGGTGCACAATTTAAAAAAA	NA	False	NA	NA	False	ATTAAA	-2	NA	59059871	59056455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr13_-_59056897_59058134_59058376_59059730
transcript_23882.nnic	chr13	-	952	3	Antisense	novelGene_ENSMUSG00000055254.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	5	junction_1	1	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CGGTGCACAATTTAAAAAAA	NA	False	NA	NA	False	ATTAAA	-2	NA	59059896	59056455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr13_-_59056897_59058134_59058480_59059730
transcript_23884.nnic	chr13	-	641	3	Antisense	novelGene_ENSMUSG00000055254.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	3	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CGGTGCACAATTTAAAAAAA	NA	False	NA	NA	False	ATTAAA	-2	NA	59059871	59056455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr13_-_59056897_59058316_59058376_59059730
transcript_23886.nnic	chr13	-	705	3	Antisense	novelGene_ENSMUSG00000055254.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	3	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CGGTGCACAATTTAAAAAAA	NA	False	NA	NA	False	ATTAAA	-2	NA	59059831	59056455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr13_-_59056897_59058316_59058480_59059730
transcript_23891.nnic	chr13	-	1156	3	NNC	ENSMUSG00000114743.2	novel	1247	4	NA	NA	-24759	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1.5	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCTCATTTTACAGTGTC	NA	False	NA	NA	False	AATAAA	-45	NA	59427984	59383563	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_59384283_59385437_59385544_59427653
transcript_2390.nnic	chr1	-	1010	4	NNC	ENSMUSG00000044816.11	novel	1156	8	NA	NA	12755	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	8.65383665716478	68	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACTGGATGTCAGCTCTT	9874	False	NA	NA	False	AATAAA	-11	NA	65149518	65144443	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_65144910_65148620_65148736_65148992_65149124_65149220
transcript_23901.nnic	chr13	-	1367	5	NNC	ENSMUSG00000021557.16	novel	4143	25	NA	NA	-3335	3	intron_retention	FALSE	canonical	2	6	junction_4	9.73396116696589	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCTTGTCATCTTTTTA	NA	False	NA	0	True	AATAAA	-20	NA	59616437	59597347	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_59598129_59608282_59608444_59609810_59609988_59613798_59613931_59616321
transcript_23903.nnic	chr13	-	1156	5	NNC	ENSMUSG00000021557.16	novel	4143	25	NA	NA	-3341	25	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	11.2583302491977	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTGGCATTTGTTTTATT	NA	False	NA	NA	False	AATAAA	-21	NA	59616443	59597783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_59598129_59608282_59608444_59609810_59609988_59613798_59613931_59616102
transcript_23909.known	chr13	-	3158	2	FSM	ENSMUSG00000021557.16	ENSMUST00000163284.2	3158	2	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGGACAAAACAAAACC	NA	False	NA	NA	False	NA	NA	NA	59733041	59727989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_59731045_59732938
transcript_2391.nnic	chr1	-	909	4	NNC	ENSMUSG00000044816.11	novel	1156	8	NA	NA	12813	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_3	4.02768199119819	138	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACTGGATGTCAGCTCTT	9932	False	NA	NA	False	AATAAA	-11	NA	65149460	65144443	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_65144910_65148620_65148736_65149035_65149124_65149220
transcript_23912.known	chr13	+	3793	23	FSM	ENSMUSG00000021555.16	ENSMUST00000022038.15	3793	23	0	0	0	0	multi-exon	FALSE	canonical	3	649	junction_6	70.4314478267713	513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTAGGAGCAGAAAAGGTG	1210	False	NA	NA	False	AATACA	-20	NA	59733108	59783736	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59756574_59756659_59757292_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773232_59773412_59775691_59775829_59776731_59776800_59777813_59777955_59778394_59778518_59780761_59780843_59782231
transcript_2393.nnic	chr1	-	664	3	NNC	ENSMUSG00000044816.11	novel	594	7	NA	NA	12816	-562	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	6.5	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAGGGAGGGAGGGAGGGA	9935	False	NA	NA	False	NA	NA	NA	65149457	65148439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_65148736_65148992_65149124_65149220
transcript_2394.nnic	chr1	-	578	3	NNC	ENSMUSG00000044816.11	novel	594	7	NA	NA	12859	-562	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	4.5	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAGGGAGGGAGGGAGGGA	9978	False	NA	NA	False	NA	NA	NA	65149414	65148439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_65148736_65149035_65149124_65149220
transcript_23949.known	chr13	-	3689	11	FSM	ENSMUSG00000021556.13	ENSMUST00000095739.10	3689	11	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_10	200.252240936275	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTAGGGTTGTTTGGTGT	NA	False	NA	-5	True	AATAAA	-22	NA	59823594	59782809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_59785216_59786118_59786227_59787933_59788156_59790056_59790202_59792906_59793037_59797376_59797480_59798509_59798565_59812011_59812192_59813340_59813491_59822774_59822911_59823540
transcript_2395.known	chr1	-	717	2	FSM	ENSMUSG00000044429.9	ENSMUST00000154012.2	717	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTCTTGCTTATCTTCA	NA	False	NA	NA	False	AATAAA	-27	NA	65142519	65139547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_65139885_65142139
transcript_23950.known	chr13	-	3954	10	FSM	ENSMUSG00000021556.13	ENSMUST00000022039.7	3954	10	0	0	0	0	multi-exon	TRUE	canonical	3	421	junction_9	46.3947102135844	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCTCATCCTCTCTAGGT	NA	False	NA	NA	False	AATAAA	-16	NA	59823625	59782439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_59785216_59786118_59786227_59787933_59788156_59790056_59790202_59792906_59793037_59797376_59797480_59798509_59798565_59812011_59812192_59813340_59813491_59823540
transcript_23969.known	chr13	+	374	5	FSM	ENSMUSG00000021555.16	ENSMUST00000168367.8	374	5	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	376.997596146182	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGCTGTTTGGTAAGAA	1174	False	NA	NA	False	ATTAAA	-42	NA	59733072	59747604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_59733107_59733966_59734096_59743162_59743197_59745853_59745969_59747542
transcript_23982.known	chr13	-	523	2	FSM	ENSMUSG00000021556.13	ENSMUST00000224160.2	523	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAATGAAAGAAATGTTG	NA	False	NA	NA	False	AATGAA	-16	NA	59823594	59822441	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_59822911_59823540
transcript_23984.nnic	chr13	-	697	3	NNC	ENSMUSG00000050876.10	novel	5325	5	NA	NA	-482	-1857	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6.5	48	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGTATTTGTATCAGTTT	NA	False	NA	NA	False	AATATA	-14	NA	59858626	59854420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_59854706_59858067_59858145_59858291
transcript_23986.nnic	chr13	-	878	3	NNC	ENSMUSG00000050876.10	novel	5325	5	NA	NA	-482	-1859	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6.5	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTAGTATTTGTATCAGT	NA	False	NA	NA	False	AATATA	-12	NA	59858626	59854422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_59854889_59858067_59858145_59858291
transcript_23990.nnic	chr13	+	783	5	NNC	ENSMUSG00000097502.3	novel	1348	3	NA	NA	916	10955	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1.22474487139159	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTTGGACTTTTACAGAC	6329	False	NA	NA	False	AAGAAA	-25	NA	59882379	59897954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_59882455_59882560_59882653_59890468_59890620_59891831_59891952_59897609
transcript_23992.nnic	chr13	+	498	3	NNC	ENSMUSG00000097502.3	novel	1239	3	NA	NA	862	0	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_2	0.5	33	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACACCAGTAGATGATGT	6275	False	NA	NA	False	AATAAA	-13	NA	59882325	59885284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_59882455_59882560_59882653_59885007
transcript_23993.nnic	chr13	+	422	3	NNC	ENSMUSG00000097502.3	novel	1348	3	NA	NA	862	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1.5	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGAGATCTCTGTGAGTT	6275	False	NA	NA	False	NA	NA	NA	59882325	59886999	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_59882455_59882560_59882653_59886798
transcript_23999.known	chr13	-	1942	4	FSM	ENSMUSG00000044792.8	ENSMUST00000057115.7	1942	4	0	0	0	0	multi-exon	FALSE	canonical	3	417	junction_3	1.63299316185545	750	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTCCTTTTCTTGTTGG	NA	False	NA	3	True	ATTAAA	-23	NA	59917624	59903222	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_59904818_59906703_59906810_59910555_59910610_59917437
transcript_24.known	ERCC-00053	+	1007	1	FSM	ERCC-00053A	DQ516785	1007	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	197	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00053_+_0_1000
transcript_24003.known	chr13	-	5869	28	FSM	ENSMUSG00000035248.10	ENSMUST00000071703.6	5869	28	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	33.5472559435836	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTGTGCAACCGGGGCC	NA	False	NA	NA	False	AATAAA	-21	NA	59970961	59919374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_59920674_59926565_59926630_59929831_59930158_59932578_59932695_59933534_59933627_59933708_59933757_59936273_59936452_59936997_59937076_59937225_59937340_59937661_59937752_59939589_59939694_59942260_59942319_59944633_59944735_59945483_59945571_59946811_59946963_59947454_59948531_59949829_59950011_59953036_59953190_59955859_59955980_59957191_59957319_59958384_59958455_59959328_59959381_59962679_59962769_59963359_59963538_59964084_59964202_59964471_59964654_59969373_59969925_59970894
transcript_24005.known	chr13	+	4862	2	FSM	ENSMUSG00000089875.3	ENSMUST00000162450.3	4862	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCGGGACTGGAGCTCCT	NA	False	NA	NA	False	NA	NA	NA	59917779	59923221	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_59918161_59918740
transcript_24009.known	chr13	-	619	2	FSM	ENSMUSG00000035248.10	ENSMUST00000225179.2	619	2	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGAAGGCTGTTTCAGA	NA	False	NA	NA	False	NA	NA	NA	59970928	59969444	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_59969925_59970789
transcript_24010.known	chr13	-	2499	2	FSM	ENSMUSG00000035248.10	ENSMUST00000225576.2	2499	2	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTTACATGCCTGCAA	NA	False	NA	NA	False	NA	NA	NA	59970947	59967926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_59969925_59970446
transcript_24015.known	chr13	+	1350	2	FSM	ENSMUSG00000089875.3	ENSMUST00000163053.3	1350	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTTTTATTCTGTCCTTT	NA	False	NA	NA	False	AGTAAA	-3	NA	59917778	59919921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_59917948_59918740
transcript_24016.nnic	chr13	+	1548	3	Intergenic	novelGene_23	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTATTCTGTGTGTACG	NA	False	NA	NA	False	NA	NA	NA	59977049	59979574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr13_+_59977216_59978081_59978212_59978322
transcript_24018.known	chr13	+	727	3	FSM	ENSMUSG00000114354.2	ENSMUST00000224737.2	727	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTATGGCTTTGTCTTTT	NA	False	NA	NA	False	AATAAA	-25	NA	59971079	59981050	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_59971440_59972695_59972784_59980771
transcript_24019.known	chr13	-	1337	8	FSM	ENSMUSG00000056728.7	ENSMUST00000043754.8	1337	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGACTGATGTTGCTTCC	NA	False	NA	NA	False	TATAAA	-11	NA	60950663	60946063	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_60946414_60946721_60946831_60947397_60947561_60948051_60948277_60948458_60948609_60948704_60948828_60949103_60949240_60950582
transcript_24021.nnic	chr13	-	1645	8	NNC	ENSMUSG00000050345.10	novel	1432	8	NA	NA	7963	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_7	2.96922995583236	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGACTTCTTTTTTTAGT	1598	False	NA	NA	False	AATAAA	-20	NA	61004326	60990425	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_60990791_60992122_60992241_60992893_60993057_61000913_61001139_61001329_61001477_61001569_61001693_61002626_61002764_61003959
transcript_24022.nnic	chr13	-	1442	8	NNC	ENSMUSG00000050345.10	novel	1432	8	NA	NA	7954	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_7	3.1943828249997	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGACTTCTTTTTTTAGT	1589	False	NA	NA	False	AATAAA	-20	NA	61004335	60990425	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_60990791_60992122_60992241_60992893_60993057_61000913_61001139_61001329_61001477_61001569_61001693_61002626_61002764_61004171
transcript_24023.known	chr13	-	1518	8	FSM	ENSMUSG00000021440.8	ENSMUST00000021892.7	1518	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.494871659305393	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTTTCTACTTTTGTCCA	NA	False	NA	NA	False	AATAAA	-17	NA	61506010	61500275	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_61500650_61501602_61501721_61502748_61502912_61503347_61503573_61504088_61504230_61504312_61504436_61504724_61504862_61505773
transcript_24048.nnic	chr13	+	2616	5	NNC	ENSMUSG00000113626.2	novel	2239	3	NA	NA	1	476	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	29.7772983999556	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTGTGTTTAAAACCAGTC	NA	False	NA	NA	False	NA	NA	NA	61952071	62009965	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_61952220_62005782_62005910_62006094_62006156_62007517_62009042_62009209
transcript_2405.known	chr1	-	2283	9	FSM	ENSMUSG00000025950.17	ENSMUST00000169032.8	2283	9	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_8	288.761904516506	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTTTATTATGTGTTTT	NA	False	NA	-8	True	ATTAAA	-26	NA	65225638	65197776	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65225463
transcript_24056.nnic	chr13	+	658	4	NNC	ENSMUSG00000113626.2	novel	353	2	NA	NA	-85730	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCCTCCTGAGAGAATAAG	NA	False	NA	NA	False	NA	NA	NA	61866340	61974328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_61866427_61952197_61952356_61963139_61963348_61974122
transcript_24058.nnic	chr13	+	537	4	NNC	ENSMUSG00000113626.2	novel	353	2	NA	NA	-32684	18	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	62.9408893769031	62	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCCTGAGTAATACTTGG	NA	False	NA	NA	False	NA	NA	NA	61919386	61974344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_61919514_61928416_61928544_61928736_61928798_61974122
transcript_24064.nnic	chr13	+	695	3	NNC	ENSMUSG00000113626.2	novel	353	2	NA	NA	4	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCCTCCTGAGAGAATAAG	NA	False	NA	NA	False	NA	NA	NA	61952074	61974328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_61952356_61963139_61963348_61974122
transcript_24065.nnic	chr13	-	691	3	Intergenic	novelGene_24	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCTCCTCCTGTTGGCGG	NA	False	NA	NA	False	NA	NA	NA	61974330	61952081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr13_-_61952351_61954381_61954594_61974120
transcript_24066.nnic	chr13	+	530	3	NNC	ENSMUSG00000113626.2	novel	353	2	NA	NA	24	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCCTCCTGAGAGAATAAG	NA	False	NA	NA	False	NA	NA	NA	61952103	61974328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_61952220_61963139_61963348_61974122
transcript_2407.known	chr1	-	2302	9	FSM	ENSMUSG00000025950.17	ENSMUST00000097709.11	2302	9	0	0	0	0	multi-exon	FALSE	canonical	3	773	junction_5	91.7393556495793	576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTATTATGTGTTTTTA	NA	False	NA	-6	True	ATTAAA	-28	NA	65218340	65197774	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65218148
transcript_24071.known	chr13	+	353	2	FSM	ENSMUSG00000113626.2	ENSMUST00000221961.2	353	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATCCTCCTGAGAGAATA	NA	False	NA	NA	False	NA	NA	NA	61952070	61974326	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_61952220_61974122
transcript_24075.known	chr13	+	687	3	FSM	ENSMUSG00000113836.2	ENSMUST00000223499.2	687	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	28	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAATGTAATCTCCAAAGC	NA	False	NA	NA	False	NA	NA	NA	62163797	62197220	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_62163867_62194994_62195122_62196729
transcript_2408.nic	chr1	+	1763	9	NIC	ENSMUSG00000025949.17	novel	1790	10	NA	NA	-43	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_8	44.0312389105735	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATGATAAAAA	NA	False	NA	NA	False	NA	NA	NA	65225798	65248558	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_65225938_65229477_65229659_65231303_65231454_65234814_65234934_65235770_65235943_65241874_65242083_65244747_65244838_65247642_65247730_65247941
transcript_241.known	SIRV3	+	779	5	FSM	SIRV3A	SIRV307	779	5	0	0	0	0	multi-exon	FALSE	canonical	3	1252	junction_4	794.143052289699	4072	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTAACGTCTCGTAAGAC	NA	False	NA	NA	False	NA	NA	NA	1963	8939	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV3_+_2006_4003_4081_4574_4775_6057_6334_8755
transcript_2410.known	chr1	+	1303	8	FSM	ENSMUSG00000025949.17	ENSMUST00000189925.7	1303	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	38.9814189121967	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAGAAAAATCCTTCAA	NA	False	NA	NA	False	NA	NA	NA	65225854	65245333	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_65225938_65229477_65229659_65231303_65231454_65234814_65234934_65235770_65235943_65241874_65242083_65244747_65244838_65245033
transcript_2411.nnic	chr1	+	1702	8	NIC	ENSMUSG00000025949.17	novel	1790	10	NA	NA	-43	26	combination_of_known_splicesites	FALSE	canonical	2	4	junction_7	38.0740417221658	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCAGTGTTCTTAGTTAT	NA	False	NA	NA	False	GATAAA	-9	NA	65225798	65248584	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_65225938_65229477_65229659_65231303_65231454_65234814_65234934_65235770_65235943_65241874_65242083_65244747_65244838_65247941
transcript_24110.known	chr13	+	886	4	FSM	ENSMUSG00000113566.2	ENSMUST00000222324.2	886	4	0	0	0	0	multi-exon	FALSE	canonical	3	481	junction_1	27.9801516952444	291	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTATGTGTGAAAGCCTG	NA	False	NA	-66	True	NA	NA	NA	62245583	62259791	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_62245653_62254561_62254689_62254881_62254943_62259162
transcript_24125.nnic	chr13	+	1951	3	NIC	ENSMUSG00000074867.5	novel	449	4	NA	NA	-67	491	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	11	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTATGTGTGGACCAGTCA	NA	False	NA	NA	False	NA	NA	NA	62367302	62384449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_62367452_62381070_62381198_62382774
transcript_24128.known	chr13	+	452	3	FSM	ENSMUSG00000113081.2	ENSMUST00000221637.2	452	3	0	0	0	0	multi-exon	FALSE	canonical	3	513	junction_2	20.5	2711	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATTGCAGGTATCTGAA	NA	False	NA	13	True	NA	NA	NA	62411379	62421101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_62411510_62420579_62420707_62420906
transcript_24132.nnic	chr13	-	2529	6	Fusion	ENSMUSG00000113623.2_ENSMUSG00000094942.8	novel	2310	4	NA	NA	-23	0	multi-exon	FALSE	canonical	2	10	junction_3	56.1070405564221	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGATCAGTCG	NA	False	NA	-12	True	NA	NA	NA	62564880	62516141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr13_-_62518166_62519376_62519438_62519623_62519751_62555228_62555290_62555482_62555610_62564751
transcript_24137.known	chr13	-	2310	4	FSM	ENSMUSG00000094942.8	ENSMUST00000187656.7	2310	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	23.1708629293104	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGATCAGTCG	NA	False	NA	-12	True	NA	NA	NA	62530991	62516141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_62518166_62519376_62519438_62519623_62519751_62530893
transcript_24138.nnic	chr13	-	2324	4	Fusion	ENSMUSG00000094942.8_ENSMUSG00000113450.2	novel	2310	4	NA	NA	-12	0	multi-exon	FALSE	canonical	3	23	junction_1	26.1661358757205	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGATCAGTCG	9526	False	NA	-12	True	NA	NA	NA	62614632	62516141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr13_-_62518166_62519376_62519438_62519623_62519751_62614520
transcript_24140.known	chr13	-	736	3	FSM	ENSMUSG00000094942.8	ENSMUST00000202194.2	736	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	20.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCTTACAAATGTAATCAAT	NA	False	NA	NA	False	NA	NA	NA	62530965	62517628	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_62518166_62519623_62519751_62530893
transcript_24145.known	chr13	-	633	4	FSM	ENSMUSG00000113623.2	ENSMUST00000221436.2	633	4	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_1	23.5372045918796	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAAGGGACACATACTGGA	NA	False	NA	NA	False	NA	NA	NA	62564857	62550854	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_62551194_62555228_62555290_62555482_62555610_62564751
transcript_24147.nnic	chr13	-	640	4	NNC	ENSMUSG00000113450.2	novel	2492	4	NA	NA	-12	447	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	18.624953392932	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGACCACTTGTTTTT	9500	False	NA	NA	False	NA	NA	NA	62614658	62600382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_62600697_62604500_62604562_62604746_62604874_62614520
transcript_24148.known	chr13	-	2492	4	FSM	ENSMUSG00000113450.2	ENSMUST00000221747.2	2492	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	11.5566238822398	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAGAAGAGGTG	9512	False	NA	NA	False	NA	NA	NA	62614646	62600829	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_62603008_62604500_62604562_62604746_62604874_62614520
transcript_24149.nic	chr13	-	687	3	ISM	ENSMUSG00000113450.2	ENSMUST00000221747.2	2492	4	-12	3310	-12	-1413	5prime_fragment	FALSE	canonical	3	39	junction_2	0.5	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGACGAAGCAAGGA	9500	False	NA	NA	False	NA	NA	NA	62614658	62604139	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_62604562_62604746_62604874_62614520
transcript_24150.known	chr13	-	1949	3	FSM	ENSMUSG00000113450.2	ENSMUST00000223247.2	1949	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	14.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTTTGCATATCACAGTTA	9538	False	NA	-4	True	NA	NA	NA	62614620	62601285	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_62603008_62604746_62604874_62614520
transcript_24155.known	chr13	-	677	5	FSM	ENSMUSG00000074865.12	ENSMUST00000222852.2	677	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_4	28.9006920332369	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAGTACATAAAAGAACACA	NA	False	NA	NA	False	NA	NA	NA	62706409	62666375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_62666545_62667985_62668047_62668231_62668359_62670268_62670480_62706300
transcript_2416.nic	chr1	+	2038	8	ISM	ENSMUSG00000025949.17	ENSMUST00000188799.7	4083	11	-34	9241	-24	614	5prime_fragment	FALSE	canonical	3	68	junction_7	18.3492200801838	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGGAGTCAGGAAATTCC	NA	False	NA	NA	False	AATAAA	-20	NA	65225817	65256035	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_65225993_65229477_65229659_65231303_65231454_65234814_65234934_65235770_65235943_65241874_65242083_65244747_65244838_65255092
transcript_24160.known	chr13	-	1653	4	FSM	ENSMUSG00000074865.12	ENSMUST00000222429.2	1653	4	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_2	51.4220013439989	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGTGCATATTTGTGTGT	NA	False	NA	-8	True	ATTAAA	-40	NA	62706421	62634459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_62635805_62640180_62640241_62640621_62640749_62706300
transcript_24162.nnic	chr13	-	1668	4	NNC	ENSMUSG00000074865.12	novel	1653	4	NA	NA	-82039	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_3	58.3495215633056	414	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGTGCATATTTGTGTGT	NA	False	NA	-8	True	ATTAAA	-40	NA	62801052	62634459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_62635805_62640180_62640241_62640621_62640749_62800916
transcript_24167.known	chr13	-	2147	4	FSM	ENSMUSG00000074865.12	ENSMUST00000101547.12	2147	4	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	18.9267594221045	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTTGTGTGTGGACCAGT	NA	False	NA	NA	False	NA	NA	NA	62706325	62664610	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_62666545_62667985_62668047_62668231_62668359_62706300
transcript_24170.known	chr13	-	2206	3	FSM	ENSMUSG00000074865.12	ENSMUST00000222746.2	2206	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	2.5	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTGTGTGGACCAGTCA	NA	False	NA	NA	False	NA	NA	NA	62706443	62664608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_62666545_62668231_62668359_62706300
transcript_24174.known	chr13	-	879	2	FSM	ENSMUSG00000074865.12	ENSMUST00000221279.2	879	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACCCCCTTACCCAGCT	NA	False	NA	NA	False	NA	NA	NA	62719013	62700056	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_62700797_62718874
transcript_24178.known	chr13	-	1457	4	FSM	ENSMUSG00000072066.8	ENSMUST00000223338.2	1457	4	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_3	3.74165738677394	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTTCAAATGTAAGGAATG	NA	False	NA	NA	False	NA	NA	NA	62771994	62752068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_62753195_62754939_62755001_62755186_62755314_62771851
transcript_2418.known	chr1	+	1044	7	FSM	ENSMUSG00000025949.17	ENSMUST00000185317.7	1044	7	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	20.9257948209593	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGATTTTTTATTTATGTC	NA	False	NA	NA	False	AATAAA	-13	NA	65225841	65244865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_65225938_65229477_65229659_65231303_65231454_65234814_65234934_65235770_65235943_65241874_65242083_65244747
transcript_24180.known	chr13	-	2640	3	FSM	ENSMUSG00000072066.8	ENSMUST00000201563.4	2640	3	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	2	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGGCTAATATCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	62771996	62750826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_62753195_62755186_62755314_62771851
transcript_24182.nnic	chr13	-	694	5	NNC	ENSMUSG00000114172.2	novel	1732	3	NA	NA	-9980	-1218	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTAGTCTCCAAACACATAT	NA	False	NA	3	True	NA	NA	NA	62801046	62788917	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_62789244_62790689_62790749_62790936_62791064_62799016_62799069_62800916
transcript_24193.nnic	chr13	-	2653	7	NNC	ENSMUSG00000074863.6	novel	1171	7	NA	NA	-34	387	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	95.1690017226665	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATGTGTCTAGGCATGTA	6774	False	NA	0	True	AATAAA	-18	NA	62860601	62846832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_62848433_62848517_62849126_62849254_62849306_62853514_62853576_62853943_62854071_62855967_62856024_62860451
transcript_2420.nic	chr1	+	1611	7	ISM	ENSMUSG00000025949.17	ENSMUST00000188799.7	4083	11	-34	19923	-24	20	5prime_fragment	FALSE	canonical	3	73	junction_1	15.5536705207056	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATTGATTTCAGCCCCGA	NA	False	NA	NA	False	ATTAAA	-18	NA	65225817	65245353	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_65225993_65229477_65229659_65231303_65231454_65234814_65234934_65235770_65235943_65241874_65242083_65244747
transcript_24205.nic	chr13	-	2691	6	NIC	ENSMUSG00000074863.6	novel	559	6	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_3	87.9377052236411	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGTTCCTGGGAAAAAAC	6775	False	NA	1	True	AATAAA	-20	NA	62860600	62819597	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_62821755_62823062_62823124_62823332_62823469_62853514_62853576_62853943_62854071_62860451
transcript_24206.nnic	chr13	-	2596	6	NNC	ENSMUSG00000074863.6	novel	2509	5	NA	NA	-33	387	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	110.897430087446	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATGTGTCTAGGCATGTA	6775	False	NA	0	True	AATAAA	-18	NA	62860600	62846832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_62848433_62848517_62849126_62849254_62849306_62853514_62853576_62853943_62854071_62860451
transcript_24208.nnic	chr13	-	2602	6	NNC	ENSMUSG00000074863.6	novel	2509	5	NA	NA	-34	387	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	104.251618692469	199	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATGTGTCTAGGCATGTA	6774	False	NA	0	True	AATAAA	-18	NA	62860601	62846832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_62848433_62848517_62849126_62853514_62853576_62853943_62854071_62855967_62856024_62860451
transcript_2421.nic	chr1	+	607	3	ISM	ENSMUSG00000025949.17	ENSMUST00000185317.7	1044	7	-43	13275	-43	-52	5prime_fragment	FALSE	canonical	3	56	junction_1	23	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTCAGTTGTTGAAAAGT	NA	False	NA	NA	False	AATAAA	-24	NA	65225798	65231590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_65225938_65229477_65229659_65231303
transcript_24210.nnic	chr13	-	2597	6	NNC	ENSMUSG00000074863.6	novel	2509	5	NA	NA	-33	387	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	110.897430087446	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATGTGTCTAGGCATGTA	6775	False	NA	0	True	AATAAA	-18	NA	62860600	62846832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_62848492_62848575_62849126_62849254_62849306_62853514_62853576_62853943_62854071_62860451
transcript_24212.nnic	chr13	-	2603	6	NNC	ENSMUSG00000074863.6	novel	2509	5	NA	NA	-34	387	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	104.251618692469	187	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATGTGTCTAGGCATGTA	6774	False	NA	0	True	AATAAA	-18	NA	62860601	62846832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_62848492_62848575_62849126_62853514_62853576_62853943_62854071_62855967_62856024_62860451
transcript_24214.nnic	chr13	-	2216	6	NNC	ENSMUSG00000074863.6	novel	2509	5	NA	NA	-34	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	104.251618692469	88	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTATGGGTGCATATTTG	6774	False	NA	-3	True	ATTAAA	-18	NA	62860601	62847218	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_62848433_62848517_62849126_62853514_62853576_62853943_62854071_62855967_62856024_62860451
transcript_24216.nnic	chr13	-	2217	6	NNC	ENSMUSG00000074863.6	novel	2509	5	NA	NA	-34	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	104.251618692469	84	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTATGGGTGCATATTTG	6774	False	NA	-3	True	ATTAAA	-18	NA	62860601	62847218	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_62848492_62848575_62849126_62853514_62853576_62853943_62854071_62855967_62856024_62860451
transcript_2422.nic	chr1	+	660	3	ISM	ENSMUSG00000025949.17	ENSMUST00000185317.7	1044	7	-43	13222	-43	1	5prime_fragment	FALSE	canonical	3	56	junction_1	23	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATGTCTTGATTGTATTT	NA	False	NA	NA	False	ATTAAA	-18	NA	65225798	65231643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_65225938_65229477_65229659_65231303
transcript_24220.nnic	chr13	-	2545	5	NNC	ENSMUSG00000074863.6	novel	2509	5	NA	NA	-33	387	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	123.408620039283	203	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATGTGTCTAGGCATGTA	6775	False	NA	0	True	AATAAA	-18	NA	62860600	62846832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_62848433_62848517_62849126_62853514_62853576_62853943_62854071_62860451
transcript_24223.nnic	chr13	-	2440	4	NNC	ENSMUSG00000074863.6	novel	2458	4	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	65.2703778311588	279	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGTTCCTGGGAAAAAAC	NA	False	NA	1	True	AATAAA	-20	NA	62832784	62819597	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_62821755_62823062_62823124_62823332_62823417_62832646
transcript_24224.known	chr13	-	615	4	FSM	ENSMUSG00000074863.6	ENSMUST00000221999.2	615	4	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_3	44.0176732183285	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCTACAACCTAAAGGAAGA	NA	False	NA	NA	False	NA	NA	NA	62832732	62821422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_62821755_62823062_62823124_62823332_62823469_62832646
transcript_2423.nic	chr1	+	643	3	ISM	ENSMUSG00000025949.17	ENSMUST00000213081.2	1790	10	-45	16968	-24	-52	5prime_fragment	FALSE	canonical	3	73	junction_1	14.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTCAGTTGTTGAAAAGT	NA	False	NA	NA	False	AATAAA	-24	NA	65225817	65231590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_65225993_65229477_65229659_65231303
transcript_24230.nnic	chr13	-	617	5	NNC	ENSMUSG00000091183.6	novel	358	2	NA	NA	-19	4961	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	11.6081867662439	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCCTGAGAGACTAGGCC	NA	False	NA	NA	False	NA	NA	NA	62933641	62915052	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_62915265_62915471_62915542_62924530_62924592_62924776_62924904_62933494
transcript_24231.nnic	chr13	-	541	4	NNC	ENSMUSG00000091183.6	novel	358	2	NA	NA	-9	4965	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_1	11.8133634311129	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGAGAGACTAGGCCTGAG	NA	False	NA	NA	False	NA	NA	NA	62933631	62915048	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_62915265_62924530_62924592_62924776_62924904_62933494
transcript_24233.known	chr13	-	358	2	FSM	ENSMUSG00000091183.6	ENSMUST00000202582.2	358	2	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTGAAGATAGTAACTTAT	NA	False	NA	NA	False	NA	NA	NA	62933598	62924649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_62924904_62933494
transcript_24234.known	chr13	-	3279	4	FSM	ENSMUSG00000091183.6	ENSMUST00000201047.4	3279	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	2.05480466765633	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGACTGGTATCTATCCT	NA	False	NA	NA	False	NA	NA	NA	62933622	62920013	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_62922977_62924530_62924592_62924776_62924904_62933494
transcript_24237.known	chr13	-	1161	2	FSM	ENSMUSG00000114117.2	ENSMUST00000221040.2	1161	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACAGCACTGTCTGATCAG	5400	False	NA	NA	False	NA	NA	NA	62963337	62961782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_62962771_62963164
transcript_24238.known	chr13	-	1354	7	FSM	ENSMUSG00000021456.9	ENSMUST00000021907.9	1354	7	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_2	7.5	797	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGTTATGGGTCTTCTG	NA	False	NA	2	True	AATAAA	-20	NA	63006236	62984690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_62985095_62988084_62988205_62989599_62989738_62997190_62997332_63001787_63001881_63002717_63002881_63005941
transcript_2424.nic	chr1	+	696	3	ISM	ENSMUSG00000025949.17	ENSMUST00000213081.2	1790	10	-45	16915	-24	1	5prime_fragment	FALSE	canonical	3	73	junction_1	14.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATGTCTTGATTGTATTT	NA	False	NA	NA	False	ATTAAA	-18	NA	65225817	65231643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_65225993_65229477_65229659_65231303
transcript_24245.nic	chr13	-	915	4	ISM	ENSMUSG00000021456.9	ENSMUST00000021907.9	1354	7	-44	12321	-44	4776	5prime_fragment	FALSE	canonical	3	131	junction_2	4.02768199119819	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTCCTGGATGTATAAAT	NA	False	NA	NA	False	AGTAAA	-9	NA	63006280	62997011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_62997332_63001787_63001881_63002717_63002881_63005941
transcript_24247.known	chr13	-	1479	7	FSM	ENSMUSG00000069805.11	ENSMUST00000092888.11	1479	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	4.93288286231625	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTCTTTAGTGCGTTGT	NA	False	NA	NA	False	AATAAA	-23	NA	63036096	63012566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_63012982_63015152_63015273_63016795_63016934_63018979_63019121_63020503_63020597_63022962_63023126_63035687
transcript_24248.nnic	chr13	-	1135	7	NNC	ENSMUSG00000069805.11	novel	1479	7	NA	NA	-167	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	4.93288286231625	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTCTTTAGTGCGTTGT	NA	False	NA	NA	False	AATAAA	-23	NA	63036263	63012566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_63012982_63015152_63015273_63016795_63016934_63018979_63019121_63020503_63020597_63022962_63023126_63036198
transcript_24258.known	chr13	+	1055	6	FSM	ENSMUSG00000021458.18	ENSMUST00000222929.2	1055	6	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	29.9933325924279	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCCAGTTTGCTTCTGAA	NA	False	NA	3	True	AATAAA	-17	NA	63387842	63450096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_63387970_63388070_63388146_63429955_63430073_63444671_63444759_63446525_63446671_63449592
transcript_24265.nic	chr13	+	1410	5	ISM	ENSMUSG00000021458.18	ENSMUST00000220884.2	772	7	-122	1560	-43	0	5prime_fragment	FALSE	canonical	3	67	junction_1	29.0387671914632	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTGTAATGTTTATTT	NA	False	NA	NA	False	ATTAAA	-35	NA	63387799	63447486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_+_63387970_63388070_63388146_63429955_63430073_63444671_63444759_63446525
transcript_24271.nic	chr13	+	1419	5	ISM	ENSMUSG00000021458.18	ENSMUST00000220885.2	894	6	285	-241	-30	0	3prime_fragment	FALSE	canonical	3	17	junction_1	48.7769156466458	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCAGTTTGCTTCTGAATT	NA	False	NA	5	True	AATAAA	-19	NA	63420599	63450098	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_+_63421164_63429955_63430073_63444671_63444759_63446525_63446671_63449592
transcript_24275.known	chr13	+	918	5	FSM	ENSMUSG00000021458.18	ENSMUST00000223007.2	918	5	0	0	0	0	multi-exon	FALSE	canonical	2	25	junction_1	45.3231453012696	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGATGTGTTCAGTCAACA	NA	False	NA	-83	True	NA	NA	NA	63421071	63450010	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_63421223_63429955_63430073_63444671_63444759_63446525_63446671_63449592
transcript_24281.known	chr13	+	1376	5	FSM	ENSMUSG00000021458.18	ENSMUST00000223073.2	1376	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	54.8241507002161	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCAGTTTGCTTCTGAATT	NA	False	NA	5	True	AATAAA	-19	NA	63426483	63450098	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_63427005_63429955_63430073_63444671_63444759_63446525_63446671_63449592
transcript_24285.known	chr13	+	1481	4	FSM	ENSMUSG00000021458.18	ENSMUST00000221364.2	1481	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	51.6333225737023	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTGTAATGTTTATTT	NA	False	NA	NA	False	ATTAAA	-35	NA	63420847	63447486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_63421164_63429955_63430073_63444671_63444759_63446525
transcript_24286.known	chr13	+	1754	4	FSM	ENSMUSG00000021458.18	ENSMUST00000223204.2	1754	4	0	0	0	0	multi-exon	FALSE	canonical	2	25	junction_1	47.8632310744781	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACTTCTGTGTAATGTTT	NA	False	NA	NA	False	ATTAAA	-31	NA	63420629	63447482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_63421223_63429955_63430073_63444671_63444759_63446525
transcript_24287.known	chr13	+	688	4	FSM	ENSMUSG00000021458.18	ENSMUST00000220670.2	688	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	6.12825877028341	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTAGTTAGTCTCACTGTT	NA	False	NA	NA	False	AATAAA	-14	NA	63420631	63442985	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_63420920_63421039_63421164_63429955_63430073_63442826
transcript_2429.known	chr1	+	2724	7	FSM	ENSMUSG00000026005.16	ENSMUST00000142920.8	2724	7	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	377.976373453274	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAACTTGAATTCTTGAT	NA	False	NA	5	True	ATTAAA	-12	NA	66739989	66758964	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_66740188_66740775_66740808_66745604_66745685_66753735_66753876_66754271_66754407_66755117_66755205_66756912
transcript_24293.known	chr13	+	459	3	FSM	ENSMUSG00000021458.18	ENSMUST00000221164.2	459	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	11.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGTAGTTAGTCTCACT	NA	False	NA	NA	False	AATAAA	-11	NA	63421036	63442982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_63421223_63429955_63430073_63442826
transcript_24294.known	chr13	+	1599	1	FSM	ENSMUSG00000021458.18	ENSMUST00000221108.2	1599	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAAGCACTCTGGCCTTG	NA	False	NA	26	True	AATAAA	-26	NA	63449086	63450685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_63449100_63450700
transcript_24298.known	chr13	-	2288	14	FSM	ENSMUSG00000021461.18	ENSMUST00000099444.10	2288	14	0	0	0	0	multi-exon	TRUE	canonical	3	11	junction_13	30.2197082916227	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGAGTCCTTGTCCTCCT	NA	False	NA	-1	True	AGTAAA	-18	NA	63579508	63459948	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_63460618_63465166_63465371_63469680_63469859_63471221_63471304_63473364_63473441_63478334_63478435_63479654_63479708_63488132_63488290_63495233_63495399_63508009_63508075_63509392_63509507_63545896_63545992_63548047_63548133_63579263
transcript_24306.nnic	chr13	-	560	4	NNC	ENSMUSG00000021466.13	novel	809	7	NA	NA	689	-67	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_3	29.7993288515027	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCGCATTTTTTTGAGTG	NA	False	NA	NA	False	AATAAA	-14	NA	63710940	63692739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_63692942_63693050_63693121_63695809_63696000_63710842
transcript_24314.nnic	chr13	-	1867	3	Intergenic	novelGene_25	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_2	1.5	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCCTCATTTGGAACATG	NA	False	NA	NA	False	NA	NA	NA	64116562	64077847	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr13_-_64079440_64079875_64079955_64116366
transcript_24315.known	chr13	-	641	1	FSM	ENSMUSG00000113340.2	ENSMUST00000220900.2	641	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGGACGCTCCAATAAACC	NA	False	NA	NA	False	NA	NA	NA	64094335	64093694	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_64093700_64094300
transcript_24318.known	chr13	-	1542	13	FSM	ENSMUSG00000033114.12	ENSMUST00000223461.2	1542	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_11	41.1348561306453	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACAGTGTGATATTACAGT	NA	False	NA	NA	False	AATAAA	-19	NA	64277150	64244954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_64245499_64246128_64246212_64247083_64247163_64252546_64252615_64254828_64254922_64256138_64256242_64259329_64259399_64260743_64260816_64266229_64266298_64268408_64268496_64270132_64270167_64274564_64274656_64276999
transcript_24320.known	chr13	-	2303	12	FSM	ENSMUSG00000033114.12	ENSMUST00000099441.6	2303	12	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_8	14.1169846708972	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTTATGGTTTTTGGTT	NA	False	NA	-1	True	NA	NA	NA	64277169	64244121	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_64245499_64246128_64246212_64247083_64247163_64252546_64252615_64254828_64254922_64256138_64256242_64259329_64259399_64260743_64260816_64266229_64266298_64268408_64268496_64270132_64270167_64276999
transcript_24327.known	chr13	-	983	11	FSM	ENSMUSG00000033114.12	ENSMUST00000222794.2	983	11	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_10	34.3745545425683	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCTAGGCTGGAAAGAGCA	NA	False	NA	NA	False	AAGAAA	-45	NA	64277139	64245377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_64245499_64246128_64246212_64247083_64247163_64252546_64252615_64254828_64254922_64256138_64256242_64259329_64259399_64260743_64260816_64266229_64266298_64268408_64268496_64276999
transcript_24331.known	chr13	-	917	11	FSM	ENSMUSG00000033114.12	ENSMUST00000220792.2	917	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	32.1846236578898	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGGCCTAGGCTGGAAAGA	NA	False	NA	NA	False	AAGAAA	-42	NA	64277125	64245380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_64245499_64247083_64247163_64252546_64252615_64254828_64254922_64256138_64256242_64259329_64259399_64260743_64260816_64266229_64266298_64268408_64268496_64270132_64270167_64276999
transcript_24338.known	chr13	-	3532	5	FSM	ENSMUSG00000044934.14	ENSMUST00000059817.12	3532	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_4	7.32717544487642	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACATGGGTCATTCTTACA	6050	False	NA	NA	False	AATAAA	-26	NA	64301016	64280831	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_64283351_64290021_64290161_64291968_64292089_64293343_64293495_64300413
transcript_24342.nic	chr13	-	2876	14	NIC	ENSMUSG00000033102.16	novel	3075	15	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_13	17.1357268913424	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACAGAGCCCATAATTAGAA	NA	False	NA	NA	False	NA	NA	NA	64396455	64343150	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_64344490_64349145_64349263_64356920_64357019_64357739_64357900_64358008_64358148_64363313_64363545_64364025_64364114_64367699_64367763_64368493_64368561_64373385_64373463_64391447_64391541_64394338_64394415_64395041_64395133_64396218
transcript_24343.known	chr13	-	2886	14	FSM	ENSMUSG00000033102.16	ENSMUST00000109769.10	2886	14	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	22.3145877936915	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	64396456	64343171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_64344490_64353084_64353232_64356920_64357019_64357739_64357900_64358008_64358148_64363313_64363545_64364025_64364114_64367699_64367763_64368493_64368561_64373385_64373463_64391447_64391541_64394338_64394415_64395041_64395133_64396218
transcript_24346.known	chr13	-	3011	6	FSM	ENSMUSG00000021482.11	ENSMUST00000222570.2	3011	6	0	0	0	0	multi-exon	TRUE	canonical	3	150	junction_1	21.3672646822189	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTGTTTGTTCTGGGTTC	NA	False	NA	0	True	ATTAAA	-17	NA	64460524	64437610	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_64440043_64445068_64445201_64456635_64456742_64456906_64456961_64460080_64460150_64460306
transcript_24349.known	chr13	-	2858	5	FSM	ENSMUSG00000021482.11	ENSMUST00000220895.2	2858	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	71.2635951941803	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAAATTTTTTGTTTGGGT	NA	False	NA	-21	True	AATAAA	-27	NA	64460524	64437631	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_64440043_64456635_64456742_64456906_64456961_64460080_64460150_64460306
transcript_24351.nic	chr13	+	1833	3	NIC	ENSMUSG00000097101.4	novel	1805	3	NA	NA	-93	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	0.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTAATCTCCAGCATTTG	NA	False	NA	NA	False	ATTAAA	-24	NA	64396420	64415962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_64397018_64414255_64414364_64414834
transcript_24352.nic	chr13	+	1835	3	NIC	ENSMUSG00000097101.4	novel	1024	3	NA	NA	-93	950	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	1	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAATGGCATCTGCTGTGA	NA	False	NA	NA	False	NA	NA	NA	64396420	64416912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_64397018_64414255_64414364_64415782
transcript_24353.known	chr13	+	1805	3	FSM	ENSMUSG00000097101.4	ENSMUST00000181403.3	1805	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTAATCTCCAGCATTTG	NA	False	NA	NA	False	ATTAAA	-24	NA	64396513	64415962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_64397018_64414190_64414364_64414834
transcript_24355.nnic	chr13	-	1693	3	NNC	ENSMUSG00000033102.16	novel	628	5	NA	NA	316	-9	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	8	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGACAGAGCCCA	NA	False	NA	NA	False	NA	NA	NA	64345422	64343159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_64344490_64344793_64344860_64345125
transcript_24356.known	chr13	+	253	2	FSM	ENSMUSG00000097101.4	ENSMUST00000189419.2	253	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTAATCTCCAGCATTTG	3511	False	NA	NA	False	ATTAAA	-24	NA	64414290	64415962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_64414364_64415782
transcript_24366.known	chr13	-	1971	8	FSM	ENSMUSG00000021477.10	ENSMUST00000021933.8	1971	8	0	0	0	0	multi-exon	FALSE	canonical	3	1187	junction_3	95.3616103822386	10030	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTCAAGTCTCATATCTG	NA	False	NA	NA	False	NA	NA	NA	64518120	64511027	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_64512015_64513018_64513137_64514292_64514456_64514681_64514907_64515673_64515821_64515929_64516053_64516841_64516979_64518049
transcript_24368.known	chr13	+	4118	8	FSM	ENSMUSG00000021483.9	ENSMUST00000021939.8	4118	8	0	0	0	0	multi-exon	TRUE	canonical	3	37	junction_1	3.65892813567591	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTGTATGCTGCCATT	NA	False	NA	NA	False	AATAAA	-17	NA	64580127	64589587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_64580485_64580790_64580905_64583931_64584121_64584306_64584429_64584579_64584643_64585202_64585327_64585690_64585847_64586594
transcript_24373.known	chr13	-	3251	13	FSM	ENSMUSG00000038212.17	ENSMUST00000054730.10	3251	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	144.098827969634	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATGGCTTAAAAACAATTT	NA	False	NA	-15	True	AATAAA	-17	NA	65260788	65212959	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_65214676_65215676_65215820_65217457_65217556_65219818_65219932_65221369_65221442_65222799_65222914_65223297_65223517_65226167_65226283_65229213_65229342_65234902_65234966_65243432_65243529_65260317_65260473_65260569
transcript_24376.known	chr13	-	3551	11	FSM	ENSMUSG00000032999.11	ENSMUST00000221659.2	3551	11	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_10	15.0253119767944	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTCTACTGACTTCTAAT	NA	False	NA	-13	True	ATTAAA	-18	NA	65353782	65324930	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_65325478_65329342_65329517_65330716_65330888_65332776_65332948_65335254_65335423_65338038_65338201_65338632_65338792_65341799_65343370_65346982_65347285_65353433_65353531_65353752
transcript_24378.known	chr13	-	3527	10	FSM	ENSMUSG00000032999.11	ENSMUST00000037372.8	3527	10	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_9	7.43531778858738	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTGACTTCTAATCTCAAA	NA	False	NA	-7	True	ATTAAA	-24	NA	65353530	65324924	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_65325478_65329342_65329517_65330716_65330888_65332776_65332948_65335254_65335423_65338038_65338201_65338632_65338792_65341799_65343370_65346982_65347285_65353433
transcript_24379.nnic	chr13	+	1937	5	NNC	ENSMUSG00000110393.3	novel	1597	4	NA	NA	-794	12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	13.7727085208393	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTTTGCTTTAATTTT	NA	False	NA	NA	False	NA	NA	NA	65388772	65397980	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_65389830_65395454_65395582_65395782_65395844_65396789_65396883_65397381
transcript_2438.known	chr1	+	2692	6	FSM	ENSMUSG00000026005.16	ENSMUST00000027157.10	2692	6	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_1	56.5840967056999	1442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAACTTGAATTCTTGAT	NA	False	NA	5	True	ATTAAA	-12	NA	66739989	66758964	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_66740188_66745604_66745685_66753735_66753876_66754271_66754407_66755117_66755205_66756912
transcript_24381.known	chr13	+	1597	4	FSM	ENSMUSG00000110393.3	ENSMUST00000209951.2	1597	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	3.55902608401044	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTTCTTGTCTCAAAAA	NA	False	NA	NA	False	NA	NA	NA	65389566	65397935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_65389830_65395454_65395582_65395782_65395844_65396789
transcript_24389.known	chr13	+	2909	8	FSM	ENSMUSG00000021514.19	ENSMUST00000126879.8	2909	8	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	11.5564276663752	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATACCCTCCCCCCACCC	NA	False	NA	NA	False	NA	NA	NA	65426627	65445609	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_65426802_65427074_65427155_65428075_65428203_65432734_65432831_65439636_65440120_65442209_65442299_65443413_65443541_65443876
transcript_24391.known	chr13	+	1580	8	FSM	ENSMUSG00000021514.19	ENSMUST00000130799.8	1580	8	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_7	17.3980998258724	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTGCTGTGATAGCTG	NA	False	NA	26	True	AATAAA	-19	NA	65426627	65452035	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_65426802_65427074_65427155_65428075_65428203_65432734_65432831_65439636_65440120_65442209_65442299_65443413_65443541_65451631
transcript_24399.nnic	chr13	+	1463	7	NIC	ENSMUSG00000021514.19	novel	1580	8	NA	NA	-11	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_6	15.1840559652405	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTCTGCTGTGATAGCT	NA	False	NA	25	True	AATAAA	-18	NA	65426616	65452034	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_65426802_65427074_65427155_65428075_65428203_65432734_65432831_65439636_65440120_65442209_65442299_65451631
transcript_24403.nnic	chr13	+	1553	7	NIC	ENSMUSG00000021514.19	novel	1580	8	NA	NA	10	0	combination_of_known_splicesites	FALSE	canonical	3	9	junction_1	18.830383249773	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTCTGCTGTGATAGCT	NA	False	NA	25	True	AATAAA	-18	NA	65426637	65452034	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_65426913_65427074_65427155_65428075_65428203_65432734_65432831_65439636_65440120_65442209_65442299_65451631
transcript_24410.nnic	chr13	+	874	5	NIC	ENSMUSG00000021514.19	novel	1580	8	NA	NA	-11	-17	combination_of_known_splicesites	FALSE	canonical	2	10	junction_4	17.9234483289349	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTGTGTGGAACTTTTTT	NA	False	NA	8	True	AATAAA	-1	NA	65426616	65452017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_65426802_65427074_65427155_65428075_65428203_65432734_65432831_65451631
transcript_24414.nnic	chr13	+	795	4	NIC	ENSMUSG00000021514.19	novel	1580	8	NA	NA	-11	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_3	23.2999761564017	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTCTGCTGTGATAGCT	NA	False	NA	25	True	AATAAA	-18	NA	65426616	65452034	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_65426802_65427074_65427155_65428075_65428203_65451631
transcript_24419.known	chr13	+	554	1	FSM	ENSMUSG00000114194.2	ENSMUST00000221086.2	554	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATTCAGCATAAAATAAA	NA	False	NA	NA	False	AAGAAA	-31	NA	65461571	65462125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_65461600_65462100
transcript_24428.nnic	chr13	-	3928	5	NNC	ENSMUSG00000113406.2	novel	604	4	NA	NA	-29	828	at_least_one_novel_splicesite	TRUE	canonical	3	20	junction_1	33.8110558841335	76	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAGAAGGAAAGAAAGGAA	7252	False	NA	NA	False	NA	NA	NA	65496440	65483207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_65486220_65486639_65487225_65488362_65488424_65488791_65488919_65496297
transcript_24438.nnic	chr13	-	584	4	Fusion	ENSMUSG00000113990.2_ENSMUSG00000113406.2	novel	604	4	NA	NA	-29	-172	multi-exon	FALSE	canonical	0	0	junction_1	43.3666538560063	82	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTCTGTAGTCTTCTTCA	7252	False	NA	89	True	NA	NA	NA	65496440	65480892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr13_-_65481146_65488362_65488424_65488791_65488919_65496297
transcript_24440.nnic	chr13	-	500	4	NNC	ENSMUSG00000113406.2	novel	604	4	NA	NA	-66569	3057	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	42.8200368467328	106	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTTGGTCATGAAATCTA	NA	False	NA	3	True	NA	NA	NA	65562980	65480978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_65481146_65488362_65488424_65488791_65488919_65562835
transcript_24441.nnic	chr13	-	1441	4	NNC	ENSMUSG00000113406.2	novel	604	4	NA	NA	-29	823	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	42.9055810925442	56	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAAAGAAGGAAAGAA	7252	False	NA	NA	False	NA	NA	NA	65496440	65483212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_65484323_65488362_65488424_65488791_65488919_65496297
transcript_24450.nnic	chr13	+	822	4	NNC	ENSMUSG00000112935.2	novel	1198	2	NA	NA	-948	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	0.816496580927726	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTCCATTATATCAAATT	NA	False	NA	NA	False	NA	NA	NA	65527194	65529911	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_65527403_65527873_65527960_65528812_65528956_65529526
transcript_24453.known	chr13	+	1198	2	FSM	ENSMUSG00000112935.2	ENSMUST00000222598.2	1198	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTCCATTATATCAAATT	NA	False	NA	NA	False	NA	NA	NA	65528142	65529911	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_65528956_65529526
transcript_24458.nnic	chr13	-	2349	4	NNC	ENSMUSG00000114065.2	novel	2545	6	NA	NA	-122194	-9180	intron_retention	FALSE	canonical	0	0	junction_1	27.7408643620842	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTCAGGGATCAGTACAT	NA	False	NA	NA	False	NA	NA	NA	65705547	65578628	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_65580648_65697380_65697442_65697641_65697769_65705405
transcript_2446.known	chr1	+	759	6	FSM	ENSMUSG00000026005.16	ENSMUST00000190404.2	759	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	403.212102992953	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTACCTTTATAGAGATG	NA	False	NA	NA	False	ATTAAA	-34	NA	66740065	66757178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_66740177_66740775_66740796_66753735_66753876_66754271_66754407_66755117_66755205_66756912
transcript_24460.known	chr13	-	908	1	FSM	ENSMUSG00000114031.2	ENSMUST00000221462.2	908	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTCACCACATACTTAAAGG	NA	False	NA	NA	False	NA	NA	NA	65627106	65626198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_65626200_65627100
transcript_24470.nnic	chr13	-	603	3	NNC	ENSMUSG00000113955.2	novel	364	2	NA	NA	-7075	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	204	1542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGCCTTCGTTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	65651682	65639602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_65639775_65644415_65644605_65651440
transcript_24477.known	chr13	-	364	2	FSM	ENSMUSG00000113955.2	ENSMUST00000220945.2	364	2	0	0	0	0	multi-exon	FALSE	canonical	3	408	junction_1	0	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGCCTTCGTTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	65644607	65639602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_65639775_65644415
transcript_2448.known	chr1	-	1916	11	FSM	ENSMUSG00000026003.6	ENSMUST00000027153.6	1916	11	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_4	12.5315601582564	1118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGCCCTGGGGAATGAGA	NA	False	NA	-19	True	AATAAA	-29	NA	66902436	66869997	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_66870687_66876120_66876208_66877437_66877566_66880780_66880895_66882239_66882342_66884326_66884492_66887558_66887626_66892285_66892451_66893782_66893921_66896557_66896714_66902331
transcript_24480.nnic	chr13	-	694	4	Intergenic	novelGene_26	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	27.7408643620842	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCAAATTAATATTTTTCT	NA	False	NA	NA	False	NA	NA	NA	65705519	65675051	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr13_-_65675444_65697380_65697442_65697641_65697769_65705405
transcript_24492.nnic	chr13	-	997	5	NNC	ENSMUSG00000113135.2	novel	478	3	NA	NA	-19450	140055	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	117.779454914684	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACGGTTTCTCTGGAGTTA	NA	False	NA	-1	True	NA	NA	NA	65787507	65623582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_65623740_65668886_65669217_65763699_65763903_65764103_65764190_65787286
transcript_24500.nnic	chr13	-	1412	5	NNC	ENSMUSG00000113135.2	novel	478	3	NA	NA	-80	2346	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	104.958027325212	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTACTCAACACATACTTA	NA	False	NA	NA	False	NA	NA	NA	65768137	65761291	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_65761711_65761787_65762285_65763699_65763903_65764103_65764190_65767930
transcript_24506.nnic	chr13	-	712	4	NNC	ENSMUSG00000113135.2	novel	478	3	NA	NA	-80	17521	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	112.194275948266	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAAATATATGTGTCTTA	NA	False	NA	NA	False	NA	NA	NA	65768137	65746116	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_65746333_65763699_65763903_65764103_65764190_65767930
transcript_2451.known	chr1	-	495	1	FSM	ENSMUSG00000082769.4	ENSMUST00000121857.2	495	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAGAAGCAACAAGAAAATA	NA	False	NA	NA	False	NA	NA	NA	66888761	66888266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_66888300_66888800
transcript_24511.nnic	chr13	-	1768	4	NNC	ENSMUSG00000113135.2	novel	478	3	NA	NA	-80	1850	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	106.013625958595	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTTTTTTTTTTAAGTTG	NA	False	NA	NA	False	NA	NA	NA	65768137	65761787	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_65763060_65763699_65763903_65764103_65764190_65767930
transcript_24514.known	chr13	-	478	3	FSM	ENSMUSG00000113135.2	ENSMUST00000220469.2	478	3	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_2	85	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCAAGACCAGCCTGGTCT	NA	False	NA	NA	False	NA	NA	NA	65768057	65763637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_65763903_65764103_65764190_65767930
transcript_2452.known	chr1	-	378	1	FSM	ENSMUSG00000094191.2	ENSMUST00000143596.2	378	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	150	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGCTCATGTCAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	66988099	66987721	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_66987700_66988100
transcript_24520.nnic	chr13	-	718	5	NNC	ENSMUSG00000113260.2	novel	1038	6	NA	NA	-99641	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	35.8608421540822	22	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGTATAGTCTCATAATA	NA	False	NA	NA	False	NA	NA	NA	65960909	65840158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_65840489_65912752_65912808_65954300_65954362_65954561_65954689_65960764
transcript_24522.nnic	chr13	-	790	5	NNC	ENSMUSG00000113260.2	novel	1038	6	NA	NA	-99641	2	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_4	32.158785735783	27	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGTATAGTCTCATAATA	NA	False	NA	NA	False	NA	NA	NA	65960909	65840158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_65840489_65912752_65912880_65954300_65954362_65954561_65954689_65960764
transcript_2454.known	chr1	-	1385	10	FSM	ENSMUSG00000026000.17	ENSMUST00000119559.8	1385	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	165.875529714376	226	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCGAGTTTTTATTTCC	NA	False	NA	-5	True	AATGAA	-16	NA	67077993	67042533	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_67042717_67043497_67043571_67043948_67044126_67046026_67046210_67048386_67048534_67049069_67049206_67060016_67060225_67073282_67073401_67077653_67077751_67077930
transcript_24547.nnic	chr13	-	1494	4	NNC	ENSMUSG00000113559.2	novel	1005	4	NA	NA	-8371	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	70.5423434698779	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCACTGTACTCACCACAT	NA	False	NA	NA	False	NA	NA	NA	66138976	66124155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_66125065_66126415_66126651_66126851_66126979_66138753
transcript_24550.nnic	chr13	-	1424	4	NNC	ENSMUSG00000113559.2	novel	1005	4	NA	NA	-44656	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	76.524505878836	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCACTGTACTCACCACAT	NA	False	NA	NA	False	NA	NA	NA	66175261	66124155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_66125065_66126415_66126651_66126851_66126979_66175108
transcript_24568.nnic	chr13	-	815	3	NNC	ENSMUSG00000113559.2	novel	1005	4	NA	NA	-8371	-1652	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_2	59.5	340	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGAAACATTGCCTTAAGAG	NA	False	NA	NA	False	NA	NA	NA	66138976	66126185	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_66126651_66126851_66126979_66138753
transcript_2457.known	chr1	+	5555	38	FSM	ENSMUSG00000025991.9	ENSMUST00000027144.8	5555	38	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.20791570269358	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGCAGTTGAATTCTTT	1281	False	NA	NA	False	AATAAA	-14	NA	67162184	67270418	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_67162450_67178915_67179026_67182023_67182169_67183024_67183115_67184945_67185003_67187868_67187962_67191440_67191531_67195291_67195421_67195982_67196090_67196897_67197037_67198022_67198101_67200017_67200117_67201739_67201836_67204540_67204731_67205527_67205686_67207399_67207529_67210007_67210153_67211814_67212026_67213461_67213661_67216067_67216245_67219229_67219349_67234301_67234444_67235696_67235763_67236163_67236228_67237459_67237642_67243666_67243862_67244290_67244359_67245914_67245991_67248754_67248833_67251561_67251670_67253175_67253266_67254568_67254740_67257010_67257086_67259661_67259761_67266282_67266343_67267394_67267508_67268547_67268678_67269406
transcript_24573.nnic	chr13	-	792	3	NNC	ENSMUSG00000113559.2	novel	1005	4	NA	NA	-125949	-1652	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_2	76.5	68	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGAAACATTGCCTTAAGAG	NA	False	NA	NA	False	NA	NA	NA	66256554	66126185	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_66126651_66126851_66126979_66256354
transcript_24576.nnic	chr13	+	747	3	Intergenic	novelGene_27	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAGCACACTTTAACATT	NA	False	NA	NA	False	GGGGCT	-32	NA	66148580	66179914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr13_+_66149066_66153056_66153121_66179716
transcript_2458.nnic	chr1	+	609	4	NNC	ENSMUSG00000053153.15	novel	3559	11	NA	NA	-29	-28416	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	2.35702260395516	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCATCTTGCCTCTTAAT	NA	False	NA	NA	False	AATAAA	-17	NA	69866099	69884503	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_69866281_69882127_69882175_69883437_69883534_69884218
transcript_2459.known	chr1	+	3559	11	FSM	ENSMUSG00000053153.15	ENSMUST00000113940.4	3559	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_8	1.81383571472171	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAAAGTAACATCTCTTGT	NA	False	NA	NA	False	AATAAA	-23	NA	69866150	69965401	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_69866281_69882127_69882175_69883437_69883534_69892481_69892601_69897631_69897770_69909422_69909531_69912292_69912411_69926650_69926718_69934385_69934431_69935630_69935741_69962820
transcript_24597.known	chr13	+	1525	4	FSM	ENSMUSG00000095909.3	ENSMUST00000238623.2	1525	4	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	62.9620697104393	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATCATAAAAGAACCCAT	NA	False	NA	NA	False	NA	NA	NA	66261293	66270282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_66261375_66267450_66267578_66267777_66267839_66269026
transcript_2460.known	chr1	-	5659	11	FSM	ENSMUSG00000026196.8	ENSMUST00000027393.8	5659	11	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_8	5.88642506110457	190	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAATGAGACTCAACCTGA	NA	False	NA	32	True	NA	NA	NA	71142305	71066656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_71070012_71070517_71070616_71085836_71085930_71086798_71086932_71092771_71092881_71104637_71104811_71106266_71106348_71113701_71114640_71127267_71127411_71128629_71128687_71141826
transcript_24601.nnic	chr13	+	957	5	Fusion	ENSMUSG00000113156.2_ENSMUSG00000113760.2	novel	306	2	NA	NA	-81632	439	multi-exon	FALSE	canonical	3	19	junction_4	45.8659732263472	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCCGATGCCCTGATCCT	NA	False	NA	NA	False	NA	NA	NA	66098390	66326353	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr13_+_66098504_66186206_66186334_66186533_66186595_66325249_66325393_66325840
transcript_24603.nnic	chr13	+	950	5	Fusion	ENSMUSG00000095909.3_ENSMUSG00000113156.2	novel	306	2	NA	NA	-162896	439	multi-exon	FALSE	canonical	3	19	junction_4	44.4437847173258	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCCGATGCCCTGATCCT	NA	False	NA	NA	False	NA	NA	NA	66098397	66326353	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr13_+_66098504_66267450_66267578_66267777_66267839_66325249_66325393_66325840
transcript_24604.nnic	chr13	+	887	5	Fusion	ENSMUSG00000095909.3_ENSMUSG00000113156.2	novel	1525	4	NA	NA	-40	42	multi-exon	FALSE	canonical	2	6	junction_4	52.5232091555724	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGTCTATTGTTCCTTAT	NA	False	NA	NA	False	NA	NA	NA	66261253	66325956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr13_+_66261375_66267450_66267578_66267777_66267839_66325249_66325393_66325521
transcript_24605.nnic	chr13	+	965	5	Fusion	ENSMUSG00000095909.3_ENSMUSG00000113156.2	novel	1525	4	NA	NA	-40	439	multi-exon	FALSE	canonical	3	19	junction_4	48.2415795761291	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCCGATGCCCTGATCCT	NA	False	NA	NA	False	NA	NA	NA	66261253	66326353	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr13_+_66261375_66267450_66267578_66267777_66267839_66325249_66325393_66325840
transcript_24608.nnic	chr13	+	777	3	Fusion	ENSMUSG00000095909.3_ENSMUSG00000113156.2	novel	306	2	NA	NA	-40	439	multi-exon	FALSE	canonical	0	0	junction_1	9.5	80	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCCGATGCCCTGATCCT	NA	False	NA	NA	False	NA	NA	NA	66261253	66326353	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr13_+_66261375_66325249_66325393_66325840
transcript_24614.nnic	chr13	+	587	4	Intergenic	novelGene_28	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAGATCCCGCCTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	66375717	66391932	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr13_+_66375998_66384209_66384271_66384471_66384599_66391813
transcript_24622.nnic	chr13	+	1159	4	NNC	ENSMUSG00000114616.2	novel	463	3	NA	NA	-62	-40890	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	52	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGAACTGTTTTTCTCGA	NA	False	NA	NA	False	NA	NA	NA	66392021	66412337	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_66392214_66410256_66410298_66410645_66410719_66411484
transcript_24631.known	chr13	+	463	3	FSM	ENSMUSG00000114616.2	ENSMUST00000224041.2	463	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	12	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAGCATGTGAACCTTGA	NA	False	NA	NA	False	NA	NA	NA	66392083	66453227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_66392214_66448255_66448445_66453083
transcript_24632.known	chr13	+	360	3	FSM	ENSMUSG00000114616.2	ENSMUST00000225647.2	360	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	18.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTACGCCCTATCCTGCAG	NA	False	NA	NA	False	NA	NA	NA	66392083	66599338	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_66392214_66448255_66448445_66599297
transcript_24645.nnic	chr13	-	743	6	Fusion	ENSMUSG00000118666.1_ENSMUSG00000094499.4	novel	1567	4	NA	NA	-2	11726	multi-exon	FALSE	non_canonical	0	0	junction_3	16.365818036383	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCAGTGTCTATTGTTC	NA	False	NA	NA	False	NA	NA	NA	66549934	66417223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr13_-_66417335_66417784_66417928_66431569_66431632_66431832_66431958_66548348_66548541_66549824
transcript_24650.nnic	chr13	-	704	5	NNC	ENSMUSG00000118666.1	novel	1567	4	NA	NA	-7350	134871	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	27.4988636128841	59	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCAGTATCTTTTGGCCT	1844	False	NA	NA	False	NA	NA	NA	66439315	66294078	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_66294311_66417784_66417928_66431569_66431632_66431832_66431958_66439173
transcript_24654.nnic	chr13	-	628	5	NNC	ENSMUSG00000118666.1	novel	1567	4	NA	NA	-7350	11771	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	28.3681159050086	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCCTGAAGGAGTTTTTA	1844	False	NA	NA	False	NA	NA	NA	66439315	66417178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_66417335_66417784_66417928_66431569_66431632_66431832_66431958_66439173
transcript_24656.nnic	chr13	-	616	5	Fusion	ENSMUSG00000118666.1_ENSMUSG00000094499.4	novel	1567	4	NA	NA	-38	11755	multi-exon	FALSE	non_canonical	0	0	junction_3	16.8819430161341	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTTTATCAGCTGATCCC	NA	False	NA	NA	False	NA	NA	NA	66549970	66417194	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr13_-_66417335_66417784_66417928_66431569_66431632_66431832_66431958_66549824
transcript_24658.nnic	chr13	-	3330	5	Fusion	ENSMUSG00000118666.1_ENSMUSG00000114239.2	novel	1567	4	NA	NA	-7417	343	multi-exon	TRUE	non_canonical	0	0	junction_1	30.3108891324554	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCACAGTTTG	1777	False	NA	NA	False	NA	NA	NA	66439382	66427389	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr13_-_66429686_66429768_66430407_66431569_66431632_66431832_66431958_66439173
transcript_24661.nnic	chr13	-	2680	5	NNC	ENSMUSG00000118666.1	novel	1567	4	NA	NA	-7361	967	intron_retention	TRUE	non_canonical	0	0	junction_1	30.3108891324554	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	1833	False	NA	-1	True	NA	NA	NA	66439326	66427982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_66429623_66429706_66430407_66431569_66431632_66431832_66431958_66439173
transcript_24679.nnic	chr13	-	622	5	Genic_Genomic	ENSMUSG00000114729.2	novel	2350	1	NA	NA	-6358	12569	multi-exon	FALSE	canonical	1	3	junction_1	16.583123951777	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCCTCTGAAGGAGTTT	NA	False	NA	NA	False	NA	NA	NA	66497352	66476075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr13_-_66476232_66476681_66476825_66490608_66490670_66490865_66490993_66497217
transcript_24681.nnic	chr13	-	624	3	Genic_Genomic	ENSMUSG00000114729.2	novel	2350	1	NA	NA	-6358	-1663	multi-exon	FALSE	canonical	3	23	junction_1	10	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGAATAGTGATGTGTGT	NA	False	NA	NA	False	NA	NA	NA	66497352	66490307	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr13_-_66490670_66490865_66490993_66497217
transcript_24694.nnic	chr13	-	1641	5	NNC	ENSMUSG00000094499.4	novel	3029	10	NA	NA	-13	-17302	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_3	9.82344135219425	34	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGAAATAAAGTTTCTTC	NA	False	NA	NA	False	AATAAA	-24	NA	66549945	66516514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_66517022_66518268_66518952_66519399_66519543_66528836_66529024_66549824
transcript_24697.nnic	chr13	-	2555	3	NNC	ENSMUSG00000094499.4	novel	3029	10	NA	NA	-13	-22980	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	0	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAAAATCACGGTCTTCA	NA	False	NA	NA	False	NA	NA	NA	66549945	66522192	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_66524440_66528836_66529024_66549824
transcript_2470.known	chr1	+	2845	16	FSM	ENSMUSG00000026192.14	ENSMUST00000027384.6	2845	16	0	0	0	0	multi-exon	FALSE	canonical	3	576	junction_4	38.3577313661217	2774	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTTCTGTGCTGGCTGA	NA	False	NA	15	True	AATAAA	-15	NA	71596308	71618790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_71596434_71596655_71596783_71598384_71598462_71600047_71600115_71602917_71603007_71603564_71603717_71603969_71604127_71606972_71607099_71608121_71608230_71608998_71609085_71609998_71610089_71612066_71612196_71615199_71615293_71615775_71615959_71616944_71617101_71617710
transcript_24716.known	chr13	-	1519	4	FSM	ENSMUSG00000097483.3	ENSMUST00000180403.3	1519	4	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	5.09901951359278	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCATCAAGAACTGTTT	NA	False	NA	NA	False	NA	NA	NA	66667951	66651229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_66652035_66652807_66652875_66653161_66653268_66667410
transcript_24718.nnic	chr13	-	1176	4	NNC	ENSMUSG00000097483.3	novel	1519	4	NA	NA	-86	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	25.7207222984806	99	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCATCAAGAACTGTTT	NA	False	NA	NA	False	NA	NA	NA	66667673	66651229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_66652035_66652807_66652875_66653226_66653268_66667410
transcript_24721.known	chr13	-	1094	3	FSM	ENSMUSG00000097483.3	ENSMUST00000181516.2	1094	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	24	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAGAACTGTTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	66667587	66651223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_66652035_66653161_66653268_66667410
transcript_24722.nnic	chr13	-	1072	3	NIC	ENSMUSG00000097483.3	novel	1519	4	NA	NA	-23	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	31.5	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCATCAAGAACTGTTT	NA	False	NA	NA	False	NA	NA	NA	66667610	66651229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_66652035_66652807_66652875_66667410
transcript_24725.nnic	chr13	+	690	5	NNC	ENSMUSG00000114777.2	novel	1568	3	NA	NA	-6364	11598	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	28.9050168655893	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGAGTGGTTGTTGTTC	NA	False	NA	NA	False	NA	NA	NA	66667678	66689006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_66667826_66674049_66674179_66674378_66674436_66688199_66688343_66688792
transcript_24741.nnic	chr13	-	2344	4	Intergenic	novelGene_30	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGACTGGCATGTCTGCC	5019	False	NA	NA	False	NA	NA	NA	66747871	66737211	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr13_-_66737350_66744311_66744439_66744638_66744700_66745853
transcript_24742.nnic	chr13	-	593	3	Intergenic	novelGene_29	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGACTGGCATGTCTGCC	7924	False	NA	NA	False	NA	NA	NA	66744966	66737211	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr13_-_66737350_66744311_66744439_66744638
transcript_24757.nnic	chr13	-	1667	6	NNC	ENSMUSG00000114549.2	novel	1621	5	NA	NA	-9951	-327	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_5	11.6961532137708	34	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGATGTTTTTTTTTCTTC	NA	False	NA	NA	False	AATAAA	-19	NA	66846367	66831229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_66832305_66833395_66833450_66834628_66834801_66836256_66836399_66841838_66841917_66846221
transcript_2477.nic	chr1	+	1371	11	ISM	ENSMUSG00000026192.14	ENSMUST00000155769.8	1631	12	-218	2456	-189	-2053	5prime_fragment	TRUE	canonical	3	576	junction_4	25.6717743835521	1818	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAACTACTGTGTTCTTC	NA	False	NA	NA	False	AAAAAG	-6	NA	71596119	71610066	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_71596434_71596655_71596783_71598384_71598462_71600047_71600115_71602917_71603007_71603564_71603717_71603969_71604127_71606972_71607099_71608121_71608230_71608998_71609085_71609998
transcript_2478.known	chr1	+	2576	4	FSM	ENSMUSG00000026192.14	ENSMUST00000136443.2	2576	4	0	0	0	0	multi-exon	FALSE	canonical	3	629	junction_2	11.0855260988773	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	71596371	71602357	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_71596434_71596655_71596783_71598384_71598462_71600047
transcript_24789.nnic	chr13	-	1253	4	Genic_Genomic	ENSMUSG00000114839.2	novel	1153	3	NA	NA	-11736	-986	multi-exon	FALSE	canonical	2	5	junction_1	82.6599459633665	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGCTGGCTATCATTGC	4233	False	NA	NA	False	NA	NA	NA	66901113	66887420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr13_-_66888171_66888839_66889043_66889243_66889330_66900899
transcript_24795.nnic	chr13	+	1624	5	NNC	ENSMUSG00000114226.2	novel	818	2	NA	NA	-24313	477	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	16.2692194035239	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGAAATAAAGTTTCTTC	NA	False	NA	NA	False	AATAAA	-24	NA	66901191	66927683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_66901313_66924718_66924862_66925311_66925946_66926829_66927256_66927383
transcript_24810.nnic	chr13	-	712	4	Fusion	ENSMUSG00000074830.5_ENSMUSG00000114353.2	novel	894	4	NA	NA	-24	-1900	multi-exon	FALSE	canonical	3	13	junction_2	24.0739601136904	31	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATAGTCTCATAATATTTA	NA	False	NA	NA	False	NA	NA	NA	66950648	66820734	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr13_-_66821069_66942962_66943090_66946612_66946744_66950528
transcript_24814.known	chr13	-	464	4	FSM	ENSMUSG00000114353.2	ENSMUST00000224917.2	464	4	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_1	5.73488351136175	180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATACTGGAGAGAAACCTT	NA	False	NA	NA	False	NA	NA	NA	66950624	66941415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_66941596_66942701_66942763_66942962_66943090_66950528
transcript_24831.nnic	chr13	-	669	5	NNC	ENSMUSG00000114816.2	novel	3416	3	NA	NA	-7299	20633	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_2	35.6677375228651	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATACAAGGAGCTTTAAAA	1295	False	NA	NA	False	NA	NA	NA	67010234	66977081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_66977274_66977723_66977867_67002549_67002611_67002809_67002937_67010088
transcript_24834.known	chr13	+	579	1	FSM	ENSMUSG00000095847.2	ENSMUST00000080545.5	579	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	379	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGCCTCAGTTCCTGGCC	NA	False	NA	NA	False	NA	NA	NA	67022144	67022723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_67022100_67022700
transcript_24850.known	chr13	-	535	4	FSM	ENSMUSG00000021520.5	ENSMUST00000021993.5	535	4	0	0	0	0	multi-exon	FALSE	canonical	3	4784	junction_3	381.861231339344	75887	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGGATTATTTGAATTCAA	7712	False	NA	-25	True	AATAAA	-18	NA	67053442	67048680	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67048891_67049465_67049633_67050793_67050866_67053356
transcript_24851.known	chr13	-	1479	8	FSM	ENSMUSG00000021519.12	ENSMUST00000021991.11	1479	8	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_6	16.4005973012185	1544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGGTTTCAATATTA	377	False	NA	NA	False	AATAAA	-18	NA	67081152	67060181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67060443_67062690_67062853_67064676_67064749_67065089_67065238_67070819_67071010_67076233_67076387_67077948_67078288_67080998
transcript_24852.known	chr13	-	1415	8	FSM	ENSMUSG00000021519.12	ENSMUST00000173158.8	1415	8	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_6	120.714539306581	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAAATGTTTCTGGTTT	398	False	NA	NA	False	AATAAA	-10	NA	67081131	67060189	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67060443_67062690_67062853_67064676_67064749_67065089_67065238_67070819_67071010_67076233_67076352_67077948_67078288_67080998
transcript_24853.known	chr13	-	2353	4	FSM	ENSMUSG00000021519.12	ENSMUST00000174011.8	2353	4	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_2	10.2306728354819	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCATGGTCATTACTGTT	427	False	NA	NA	False	AATAAA	-15	NA	67081102	67069252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67071010_67076233_67076387_67077948_67078288_67080998
transcript_24856.known	chr13	-	2416	4	FSM	ENSMUSG00000058883.17	ENSMUST00000109742.11	2416	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	6.68331255192114	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTCAGTGTCGTGTTTAGT	NA	False	NA	1	True	AATAAA	-20	NA	67229576	67217462	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67219593_67222149_67222246_67222896_67223024_67229513
transcript_24857.known	chr13	-	346	3	FSM	ENSMUSG00000100235.9	ENSMUST00000225558.2	346	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	4.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAGAGTGGAAGGTCAGAT	NA	False	NA	NA	False	NA	NA	NA	67256658	67250083	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67250200_67250761_67250846_67256512
transcript_24859.nic	chr13	-	430	3	ISM	ENSMUSG00000058883.17	ENSMUST00000109742.11	2416	4	-76	4619	-43	-4618	5prime_fragment	FALSE	canonical	2	7	junction_2	5.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTTTGGTGGAAGTCTCT	NA	False	NA	NA	False	AAAACA	-15	NA	67229652	67222081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_67222246_67222896_67223024_67229513
transcript_24860.known	chr13	-	1100	2	FSM	ENSMUSG00000100235.9	ENSMUST00000187652.3	1100	2	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTCACATTAATTTTTCT	NA	False	NA	NA	False	AATAAA	-38	NA	67256668	67253432	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67254377_67256512
transcript_24861.known	chr13	-	3968	4	FSM	ENSMUSG00000090641.3	ENSMUST00000167565.3	3968	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	4.10960933531265	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTTTGCTTTTCTCTCTT	NA	False	NA	NA	False	NA	NA	NA	67209234	67186659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67190297_67192821_67192918_67200350_67200478_67209126
transcript_24862.known	chr13	-	2406	4	FSM	ENSMUSG00000058883.17	ENSMUST00000190566.3	2406	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	7.78888096369861	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTCAGTGTCGTGTTTAGT	NA	False	NA	1	True	AATAAA	-20	NA	67229609	67217462	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67219593_67222149_67222246_67222896_67222981_67229513
transcript_24864.known	chr13	+	3482	4	FSM	ENSMUSG00000057396.8	ENSMUST00000052716.8	3482	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	3.29983164553722	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTTTGCATTTTATGTG	NA	False	NA	NA	False	AATAAA	-22	NA	67276291	67289851	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_67276379_67284781_67284909_67285373_67285470_67286679
transcript_24867.nnic	chr13	+	1659	4	NNC	ENSMUSG00000058900.6	novel	2591	4	NA	NA	-64	-918	at_least_one_novel_splicesite	TRUE	canonical	3	5	junction_1	9.80929264637478	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATTGGTTCTGAAATTAT	NA	False	NA	NA	False	NA	NA	NA	67321181	67331190	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_67321240_67324511_67324639_67325128_67325225_67329812
transcript_24868.nnic	chr13	+	1735	4	NNC	ENSMUSG00000058900.6	novel	2591	4	NA	NA	-64	-842	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	9.80929264637478	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAAGCTTCTAGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	67321181	67331266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_67321240_67324511_67324639_67325128_67325225_67329812
transcript_24870.known	chr13	+	397	4	FSM	ENSMUSG00000058900.6	ENSMUST00000225334.2	397	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	8.28653526310404	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAGAAGAAATCATATAG	NA	False	NA	NA	False	NA	NA	NA	67321262	67329876	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_67321373_67324511_67324639_67325128_67325225_67329812
transcript_24873.known	chr13	+	2591	4	FSM	ENSMUSG00000058900.6	ENSMUST00000021997.8	2591	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	10.6144555520604	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATTGTATCTCATCTTA	NA	False	NA	NA	False	AATAAA	-25	NA	67321245	67332108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_67321318_67324511_67324639_67325128_67325225_67329812
transcript_24875.known	chr13	+	2712	4	FSM	ENSMUSG00000051037.16	ENSMUST00000120861.8	2712	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	1.63299316185545	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGGTTTATTATTATTAT	NA	False	NA	14	True	AATAAA	-19	NA	67342569	67357362	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_67342659_67346596_67346724_67347212_67347309_67354962
transcript_24876.nnic	chr13	+	2756	4	NNC	ENSMUSG00000051037.16	novel	2712	4	NA	NA	144	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	1.24721912892465	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGGTTTATTATTATTAT	NA	False	NA	14	True	AATAAA	-19	NA	67342742	67357362	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_67342876_67346596_67346724_67347212_67347309_67354962
transcript_24878.known	chr13	+	2556	3	FSM	ENSMUSG00000051037.16	ENSMUST00000117110.2	2556	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGGTTTATTATTATTAT	NA	False	NA	14	True	AATAAA	-19	NA	67342598	67357362	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_67342659_67347212_67347309_67354962
transcript_2488.known	chr1	+	826	3	FSM	ENSMUSG00000073652.11	ENSMUST00000097699.3	826	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	10	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAGGTGTCAGTAGTCAT	NA	False	NA	NA	False	AGTAAA	-28	NA	71691995	71696616	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_71692179_71692315_71692546_71696203
transcript_24880.nnic	chr13	-	753	6	Fusion	ENSMUSG00000098692.2_ENSMUSG00000057842.15	novel	2440	6	NA	NA	15104	2	multi-exon	FALSE	canonical	2	4	junction_1	9.58331884056875	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATAGATTTCTGATGTT	NA	False	NA	NA	False	NA	NA	NA	67508748	67461781	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr13_-_67461963_67468335_67468432_67468891_67469019_67493413_67493510_67495906_67496034_67508622
transcript_24886.nnic	chr13	-	540	4	NIC	ENSMUSG00000057842.15	novel	2440	6	NA	NA	-32	2	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	1.69967317119759	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATAGATTTCTGATGTT	3581	False	NA	NA	False	NA	NA	NA	67480666	67461781	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_67461963_67468335_67468432_67468891_67469019_67480530
transcript_24889.known	chr13	-	4677	4	FSM	ENSMUSG00000098905.3	ENSMUST00000081582.8	4677	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	6.64997911442	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTGAGGCTGGAGAAGAAT	NA	False	NA	NA	False	NA	NA	NA	67508724	67487369	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67491722_67493413_67493510_67495906_67496034_67508622
transcript_24892.known	chr13	-	4126	4	FSM	ENSMUSG00000078995.11	ENSMUST00000057070.9	4126	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	8.33999733546453	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAGGAAATGGGGCCTTA	2228	False	NA	NA	False	NA	NA	NA	67523929	67511702	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67515485_67520295_67520392_67520869_67520997_67523808
transcript_24895.nic	chr13	-	453	3	ISM	ENSMUSG00000098905.3	ENSMUST00000081582.8	4677	4	-24	5940	-24	-5940	5prime_fragment	FALSE	canonical	3	24	junction_1	1	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTATTATTATTTTTTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	67508748	67493309	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_67493510_67495906_67496034_67508622
transcript_24896.known	chr13	-	779	6	FSM	ENSMUSG00000098692.2	ENSMUST00000166080.2	779	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	12.2245654319489	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTATTATTATTTTTTTT	2305	False	NA	NA	False	ATTAAA	-18	NA	67523852	67493309	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67493510_67495906_67496034_67510425_67510567_67520295_67520392_67520869_67520997_67523764
transcript_24904.known	chr13	-	2056	4	FSM	ENSMUSG00000078994.10	ENSMUST00000109732.3	2056	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	14.7196014438797	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTCCTTTGCTTCAAAGC	5251	False	NA	NA	False	AATAAA	-25	NA	67547886	67537422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67539184_67544162_67544259_67544748_67544876_67547814
transcript_24905.known	chr13	-	379	4	FSM	ENSMUSG00000078994.10	ENSMUST00000224825.2	379	4	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_3	15.4128373622625	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTAAGGCCCTTAGTTC	5199	False	NA	NA	False	NA	NA	NA	67547938	67539073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67539184_67544162_67544259_67544748_67544876_67547892
transcript_24908.known	chr13	-	441	4	FSM	ENSMUSG00000055560.9	ENSMUST00000223644.2	441	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	17.8200885394982	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTCTGTGCTCCCTCATC	NA	False	NA	NA	False	NA	NA	NA	67569518	67556658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67556862_67561226_67561323_67561952_67562037_67569460
transcript_24909.nnic	chr13	-	1517	4	NNC	ENSMUSG00000055560.9	novel	3334	4	NA	NA	128	906	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	15.6276108929747	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGAAGTGTGATAAAGCCT	NA	False	NA	-24	True	NA	NA	NA	67569355	67555676	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_67556862_67561226_67561323_67561952_67562080_67569246
transcript_24910.known	chr13	-	646	4	FSM	ENSMUSG00000055560.9	ENSMUST00000224113.2	646	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	17.3781471969828	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGCAGAACATTTTACTAT	NA	False	NA	NA	False	NA	NA	NA	67569483	67556582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67556862_67561226_67561323_67561952_67562080_67569339
transcript_24911.known	chr13	-	3334	4	FSM	ENSMUSG00000055560.9	ENSMUST00000056470.10	3334	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	6.23609564462324	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTTAATTTGTGTAAAAAAC	NA	False	NA	-4	True	NA	NA	NA	67569537	67553827	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67556862_67561226_67561323_67561952_67562080_67569460
transcript_24913.known	chr13	-	504	3	FSM	ENSMUSG00000055560.9	ENSMUST00000224496.2	504	3	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	2.5	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCATGGCTCTTCATTTT	NA	False	NA	NA	False	NA	NA	NA	67569527	67561012	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67561323_67561952_67562080_67569460
transcript_24922.known	chr13	-	1520	6	FSM	ENSMUSG00000097565.2	ENSMUST00000167914.2	1520	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	17.7268158449283	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATGAATATAAGTGTGGG	9248	False	NA	NA	False	NA	NA	NA	67674270	67639270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67640270_67642125_67642222_67642721_67642849_67668744_67668841_67669311_67669439_67674195
transcript_24923.known	chr13	-	2391	4	FSM	ENSMUSG00000071291.11	ENSMUST00000076123.12	2391	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	4.08248290463863	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGTCTTTGGTCATGCCA	NA	False	NA	-1	True	NA	NA	NA	67648674	67638286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67640270_67642125_67642222_67642721_67642849_67648489
transcript_24924.known	chr13	-	2300	4	FSM	ENSMUSG00000071291.11	ENSMUST00000171518.8	2300	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	12.657891697365	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTTTGGTCATGCCAT	NA	False	NA	0	True	NA	NA	NA	67648622	67638285	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67640270_67642125_67642222_67642721_67642849_67648529
transcript_24925.nnic	chr13	-	719	4	NNC	ENSMUSG00000097333.8	novel	382	2	NA	NA	-28	6283	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	21.1187120819429	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAGATGAATGTATGGACT	9194	False	NA	NA	False	AATAAA	-21	NA	67674324	67657616	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_67657984_67668744_67668841_67669311_67669439_67674195
transcript_24926.known	chr13	-	850	4	FSM	ENSMUSG00000097333.8	ENSMUST00000180536.2	850	4	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	21.9696760710454	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTTCCGTAGGTCAACA	9278	False	NA	NA	False	NA	NA	NA	67674240	67665694	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67666232_67668744_67668841_67669266_67669439_67674195
transcript_24927.known	chr13	-	2656	4	FSM	ENSMUSG00000097333.8	ENSMUST00000181767.8	2656	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	7.71722460186015	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTGGTCATAGTGTTTA	9222	False	NA	NA	False	NA	NA	NA	67674296	67663899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67666232_67668744_67668841_67669311_67669439_67674195
transcript_24928.known	chr13	-	382	2	FSM	ENSMUSG00000097333.8	ENSMUST00000181573.2	382	2	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	0	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGGCTATTTGGTTTGTT	9222	False	NA	NA	False	AATAAA	-20	NA	67674296	67669157	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67669439_67674195
transcript_24929.known	chr13	-	5293	4	FSM	ENSMUSG00000095432.10	ENSMUST00000181892.9	5293	4	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	6.68331255192114	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTGAGAACTGTAGTTTT	NA	False	NA	NA	False	NA	NA	NA	67701949	67686759	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67691030_67693442_67693539_67694743_67694871_67701149
transcript_24930.nnic	chr13	+	391	3	NNC	ENSMUSG00000097360.9	novel	1084	4	NA	NA	-9	4	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	3.5	12	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGTAGTTCAGTAGCACA	NA	False	NA	NA	False	ATTAAA	-18	NA	67701343	67709355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_67701473_67701692_67701749_67709149
transcript_24931.known	chr13	-	700	3	FSM	ENSMUSG00000095432.10	ENSMUST00000053289.11	700	3	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_2	5.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTTACATGCATGGCAAT	NA	False	NA	NA	False	AATAAA	-12	NA	67701257	67693073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67693539_67694743_67694871_67701149
transcript_24933.known	chr13	-	855	4	FSM	ENSMUSG00000058093.14	ENSMUST00000138725.3	855	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	22.5437845585479	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGAGAGAAACCATACAAGT	NA	False	NA	NA	False	NA	NA	NA	67757806	67741547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67742035_67743334_67743431_67744767_67744895_67757661
transcript_24934.known	chr13	-	4835	4	FSM	ENSMUSG00000058093.14	ENSMUST00000012873.16	4835	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	17.2497987105808	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGTTTGGTGTCTCTTC	NA	False	NA	-4	True	NA	NA	NA	67757826	67737557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67742035_67743334_67743431_67744767_67744895_67757691
transcript_24935.known	chr13	-	9455	4	FSM	ENSMUSG00000021510.12	ENSMUST00000012314.10	9455	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	10.6144555520604	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGATGGTCTCTCGTGAT	NA	False	NA	-2	True	NA	NA	NA	67785910	67760881	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67769969_67771586_67771683_67772153_67772281_67785765
transcript_24936.known	chr13	-	652	4	FSM	ENSMUSG00000048280.19	ENSMUST00000175821.8	652	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	5.09901951359278	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATACAAGTGTGAAGTATGT	NA	False	NA	NA	False	NA	NA	NA	67831635	67819385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67819731_67821116_67821213_67821680_67821808_67831551
transcript_24938.known	chr13	-	609	3	FSM	ENSMUSG00000048280.19	ENSMUST00000175678.2	609	3	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_2	2	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAAAATGCATTTAAAAA	NA	False	NA	NA	False	TATAAA	-3	NA	67831633	67820842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67821213_67821680_67821808_67831521
transcript_24939.known	chr13	-	712	3	FSM	ENSMUSG00000048280.19	ENSMUST00000125495.10	712	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	1.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATTTATTTGATAAGATT	NA	False	NA	NA	False	NA	NA	NA	67831670	67820746	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67821213_67821680_67821808_67831551
transcript_2494.nnic	chr1	+	1088	3	NIC	ENSMUSG00000073652.11	novel	1193	4	NA	NA	-17	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	1.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTCTATGTGAAGTTGCT	NA	False	NA	NA	False	AATAAA	-13	NA	71692476	71702002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_71692546_71699910_71700105_71701177
transcript_24941.nnic	chr13	-	511	3	NNC	ENSMUSG00000048280.19	novel	712	3	NA	NA	-10	-171	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	7	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTTTCTGTCTTTTTCTT	NA	False	NA	NA	False	TATAAA	-17	NA	67831680	67821013	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_67821213_67821680_67821808_67831495
transcript_24945.known	chr13	-	1253	1	FSM	ENSMUSG00000048280.19	ENSMUST00000223721.2	1253	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	67831614	67830361	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67830400_67831600
transcript_24946.known	chr13	-	1103	4	FSM	ENSMUSG00000071281.13	ENSMUST00000130891.3	1103	4	0	0	0	0	multi-exon	TRUE	canonical	3	31	junction_1	3.85861230093008	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATCATTCATACAGGAGAG	NA	False	NA	NA	False	NA	NA	NA	67872445	67856307	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67857049_67858433_67858530_67858999_67859127_67872306
transcript_24948.known	chr13	-	3957	4	FSM	ENSMUSG00000071281.13	ENSMUST00000073157.15	3957	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	15.2970585407784	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTTGTTATTTTATTTAT	NA	False	NA	-1	True	NA	NA	NA	67877292	67853427	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_67857049_67858433_67858530_67858999_67859127_67877179
transcript_24951.nnic	chr13	+	726	5	NNC	ENSMUSG00000090659.10	novel	730	4	NA	NA	-12	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	16.768646337734	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGTCTTGGCTTCCATTT	NA	False	NA	NA	False	NA	NA	NA	67927799	67940639	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_67927939_67931908_67932036_67932512_67932609_67940190_67940346_67940430
transcript_24952.known	chr13	+	3258	4	FSM	ENSMUSG00000090659.10	ENSMUST00000164936.10	3258	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	3.39934634239519	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTGATTTTGGTCAGTG	NA	False	NA	5	True	NA	NA	NA	67927823	67937197	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_67927939_67931908_67932036_67932512_67932609_67934277
transcript_24956.known	chr13	+	2399	4	FSM	ENSMUSG00000030446.18	ENSMUST00000181391.8	2399	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	7.58653778449403	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGATTAGTATTGCATT	NA	False	NA	NA	False	AATAAA	-17	NA	67961858	67975121	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_67962016_67970359_67970487_67971218_67971315_67973102
transcript_24961.known	chr13	+	1576	1	FSM	ENSMUSG00000113342.2	ENSMUST00000221571.2	1576	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCCAGACTAATGTTCATA	NA	False	NA	NA	False	ATTAAA	-25	NA	68329412	68330988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_68329400_68331000
transcript_24962.known	chr13	-	3692	15	FSM	ENSMUSG00000034617.8	ENSMUST00000045827.5	3692	15	0	0	0	0	multi-exon	FALSE	canonical	3	277	junction_10	41.7021141733919	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTTGGTGAGGCTTTGTG	NA	False	NA	NA	False	ATTAAA	-25	NA	68730240	68708898	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68723136_68723510_68725706_68725825_68727661_68727816_68728669_68728835_68730183
transcript_24968.known	chr13	-	2728	14	FSM	ENSMUSG00000034617.8	ENSMUST00000223101.2	2728	14	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_10	83.6727918422384	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAAAAAAAAGAACT	NA	False	NA	-90	True	NA	NA	NA	68730232	68709481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68725706_68725825_68727661_68727816_68728669_68728835_68730183
transcript_2498.known	chr1	+	430	3	FSM	ENSMUSG00000073652.11	ENSMUST00000125934.2	430	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTGTTCTGTTGGCAAT	NA	False	NA	NA	False	TTTAAA	-4	NA	71692497	71696404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_71692546_71693476_71693658_71696203
transcript_24986.known	chr13	-	636	3	FSM	ENSMUSG00000034617.8	ENSMUST00000220973.2	636	3	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	201	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTAACTGACTGTTTCCC	NA	False	NA	NA	False	NA	NA	NA	68730059	68727664	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_68727816_68728669_68728835_68729739
transcript_24987.known	chr13	-	532	3	FSM	ENSMUSG00000034617.8	ENSMUST00000221259.2	532	3	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	182.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCGGAAGTTTGTTAAAGA	NA	False	NA	NA	False	NA	NA	NA	68730213	68727740	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_68727816_68728669_68728835_68729921
transcript_24989.nic	chr13	-	565	3	ISM	ENSMUSG00000034617.8	ENSMUST00000223101.2	2728	14	-67	18050	-31	59	5prime_fragment	FALSE	canonical	3	370	junction_2	18.5	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTGTCAGTCATTCTCCA	NA	False	NA	NA	False	NA	NA	NA	68730299	68727531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_68727816_68728669_68728835_68730183
transcript_2499.known	chr1	+	1193	4	FSM	ENSMUSG00000073652.11	ENSMUST00000126516.3	1193	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	8.80656320908194	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTCTATGTGAAGTTGCT	NA	False	NA	NA	False	AATAAA	-13	NA	71692493	71702002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_71692546_71696203_71696326_71699910_71700105_71701177
transcript_24992.nic	chr13	-	506	3	ISM	ENSMUSG00000034617.8	ENSMUST00000223101.2	2728	14	-67	18109	-31	0	5prime_fragment	FALSE	canonical	3	370	junction_2	18.5	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAAGTTGCATAGGCCT	NA	False	NA	NA	False	AATATA	-16	NA	68730299	68727590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_68727816_68728669_68728835_68730183
transcript_24995.nic	chr13	+	2327	7	NIC	ENSMUSG00000021532.12	novel	2421	7	NA	NA	-38	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	45.0175891550551	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGTTAATTGTCCGTCT	NA	False	NA	NA	False	AATAAA	-14	NA	68730314	68740397	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_68730384_68731657_68733122_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
transcript_24996.nic	chr13	+	2387	7	NIC	ENSMUSG00000021532.12	novel	2421	7	NA	NA	-38	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	45.0175891550551	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGTGTACTCTTGTTAC	NA	False	NA	NA	False	AATAAA	-14	NA	68730314	68740457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_68730384_68731657_68733122_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
transcript_25.known	ERCC-00054	+	256	1	FSM	ERCC-00054A	DQ516731	256	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00054_+_0_300
transcript_2500.known	chr1	-	1350	7	FSM	ENSMUSG00000026193.16	ENSMUST00000186940.7	1350	7	0	0	0	0	multi-exon	FALSE	canonical	3	1526	junction_2	86.2528582457159	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTCTTCTCTGGTCTTT	NA	False	NA	NA	False	CATAAA	-45	NA	71692320	71681983	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
transcript_25003.known	chr13	+	2501	7	FSM	ENSMUSG00000021532.12	ENSMUST00000223319.2	2501	7	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	60.5658502971949	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGGTGTGTACTCTTGTT	NA	False	NA	NA	False	AATAAA	-12	NA	68730381	68740455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_68730470_68731657_68733122_68733296_68733383_68735778_68735954_68737341_68737509_68738224_68738340_68740049
transcript_25004.known	chr13	+	2421	7	FSM	ENSMUSG00000021532.12	ENSMUST00000051784.10	2421	7	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	41.7053154086303	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGTGTACTCTTGTTAC	NA	False	NA	NA	False	AATAAA	-14	NA	68730366	68740457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_68730470_68731657_68733122_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
transcript_2501.known	chr1	+	480	1	FSM	ENSMUSG00000059483.6	ENSMUST00000076314.6	480	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAGTACAAAAGAAATTAA	NA	False	NA	NA	False	NA	NA	NA	72043446	72043926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_72043400_72043900
transcript_25010.nic	chr13	+	2633	7	NIC	ENSMUSG00000021532.12	novel	2421	7	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	39.5010548382361	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGTTAATTGTCCGTCT	NA	False	NA	NA	False	AATAAA	-14	NA	68730342	68740397	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_68730718_68731657_68733122_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
transcript_25011.nic	chr13	+	2693	7	NIC	ENSMUSG00000021532.12	novel	2421	7	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	39.5010548382361	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGTGTACTCTTGTTAC	NA	False	NA	NA	False	AATAAA	-14	NA	68730342	68740457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_68730718_68731657_68733122_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
transcript_2502.known	chr1	-	2284	5	FSM	ENSMUSG00000039395.9	ENSMUST00000048860.9	2284	5	0	0	0	0	multi-exon	FALSE	canonical	3	578	junction_1	58.0215477215146	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTACTGTTTTAATCTC	4222	False	NA	-40	True	AATAAA	-23	NA	72251466	72198600	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_72200179_72201480_72201645_72203230_72203322_72231201_72231362_72251175
transcript_25020.nnic	chr13	+	994	6	NIC	ENSMUSG00000021532.12	novel	2501	7	NA	NA	-12	0	combination_of_known_splicesites	TRUE	canonical	0	0	junction_1	72.0333256208541	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGTGTACTCTTGTTAC	NA	False	NA	NA	False	AATAAA	-14	NA	68730340	68740457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_68730384_68733296_68733383_68735778_68735954_68737341_68737509_68738224_68738340_68740049
transcript_25022.nnic	chr13	+	897	6	NIC	ENSMUSG00000021532.12	novel	2421	7	NA	NA	-12	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	60.6709156021236	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGTGTACTCTTGTTAC	NA	False	NA	NA	False	AATAAA	-14	NA	68730340	68740457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_68730384_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
transcript_25027.nnic	chr13	+	899	6	NIC	ENSMUSG00000021532.12	novel	1120	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_1	59.4763818670907	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGTTAATTGTCCGTCT	NA	False	NA	NA	False	AATAAA	-14	NA	68730364	68740397	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_68730470_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
transcript_2503.known	chr1	+	191	1	FSM	ENSMUSG00000118839.1	ENSMUST00000240405.1	191	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGGGAATAATATTTGTTT	NA	False	NA	NA	False	NA	NA	NA	72265398	72265589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_72265400_72265600
transcript_25031.nnic	chr13	+	775	4	NNC	ENSMUSG00000021534.9	novel	1826	3	NA	NA	8391	-1	intron_retention	FALSE	canonical	1	1	junction_1	8.01387685344754	22	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTAGCAGCTGTGTTTG	NA	False	NA	2	True	AATAAA	-18	NA	68753948	68761405	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_68754010_68755329_68755470_68759279_68759397_68760948
transcript_25033.nnic	chr13	-	1482	6	NNC	ENSMUSG00000021536.8	novel	4211	25	NA	NA	356550	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	1.74355957741627	25	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATCTTTTCTTTGCTTTTT	NA	False	NA	NA	False	ATTAAA	-30	NA	68791110	68768161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_68768992_68773906_68774032_68779028_68779144_68788828_68788937_68790575_68790723_68790953
transcript_25036.known	chr13	+	2834	19	FSM	ENSMUSG00000021595.19	ENSMUST00000109699.11	2834	19	0	0	0	0	multi-exon	FALSE	canonical	3	1529	junction_7	132.889457914055	500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTGGCATGAGACTTGGA	NA	False	NA	31	True	AATAAA	-19	NA	69760134	69782453	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_69760308_69760419_69760578_69761056_69761162_69763530_69763637_69765524_69765597_69766224_69766310_69767564_69767758_69769723_69769799_69771281_69771413_69774596_69774671_69775154_69775286_69775678_69775776_69777653_69777836_69778120_69778214_69778746_69778883_69779353_69779435_69779650_69779790_69781346_69781387_69781690
transcript_25040.known	chr13	+	4164	18	FSM	ENSMUSG00000021595.19	ENSMUST00000022087.7	4164	18	0	0	0	0	multi-exon	FALSE	canonical	3	1529	junction_6	134.755603461822	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTTGTGTGTGCTTGTATT	NA	False	NA	NA	False	AGTAAA	-37	NA	69760362	69783899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_69760578_69761056_69761162_69763530_69763637_69765524_69765597_69766224_69766310_69767564_69767758_69769723_69769799_69771281_69771413_69774596_69774671_69775154_69775286_69775678_69775776_69777653_69777836_69778120_69778214_69778746_69778883_69779353_69779435_69779650_69779790_69781346_69781387_69781690
transcript_25041.known	chr13	-	2644	5	FSM	ENSMUSG00000021594.12	ENSMUST00000091514.6	2644	5	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_3	7.15454401062709	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTATTGTTTGTCTTCAT	NA	False	NA	NA	False	AATAAA	-19	NA	69759561	69721567	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_69723316_69734703_69734855_69743034_69743137_69748349_69748517_69759085
transcript_25044.known	chr13	-	888	4	FSM	ENSMUSG00000021594.12	ENSMUST00000059235.9	888	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	10.6249183003395	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATTTGTTGTTGTTGTTGT	NA	False	NA	NA	False	TATAAA	-11	NA	69759467	69742623	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_69742861_69743034_69743137_69748349_69748517_69759085
transcript_25048.known	chr13	+	913	4	FSM	ENSMUSG00000021598.10	ENSMUST00000022089.10	913	4	0	0	0	0	multi-exon	FALSE	canonical	3	786	junction_3	16.1314048434171	9657	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCATGTAATTCTTAAAAT	NA	False	NA	27	True	AATAAA	-23	NA	69957959	69964223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_69958172_69959725_69959810_69961822_69961926_69963709
transcript_25051.nnic	chr13	-	632	2	Genic_Genomic	ENSMUSG00000094989.2	novel	579	1	NA	NA	-26	108	multi-exon	FALSE	canonical	2	198	junction_1	0	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCGTGCACCACCAAAATC	NA	False	NA	NA	False	AATAAA	-35	NA	72603485	72602772	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr13_-_72602988_72603068
transcript_25053.known	chr13	-	579	1	FSM	ENSMUSG00000094989.2	ENSMUST00000075549.8	579	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	826	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGCCTCAGTTCCTGGCC	NA	False	NA	NA	False	NA	NA	NA	72603459	72602880	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_72602900_72603500
transcript_25054.known	chr13	+	300	1	FSM	ENSMUSG00000066407.4	ENSMUST00000085163.4	300	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	59420	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAGTTTCTATTT	NA	False	NA	NA	False	AATAAA	-12	NA	73465962	73466262	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_73466000_73466300
transcript_25075.known	chr13	-	568	4	FSM	ENSMUSG00000021606.9	ENSMUST00000022097.6	568	4	0	0	0	0	multi-exon	FALSE	canonical	3	2374	junction_2	33.95094500403	38418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGAGTTGTTTCTTCCTT	NA	False	NA	-3	True	AATAAA	-19	NA	73476661	73467992	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_73468180_73468412_73468536_73475534_73475589_73476457
transcript_25076.known	chr13	-	534	4	FSM	ENSMUSG00000021606.9	ENSMUST00000147407.2	534	4	0	0	0	0	multi-exon	FALSE	canonical	3	341	junction_3	967.204333231723	2596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATAGTGAGTTGTTTCT	NA	False	NA	-8	True	AATAAA	-14	NA	73476571	73467997	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_73468180_73468412_73468536_73475534_73475589_73476396
transcript_25077.known	chr13	-	757	3	FSM	ENSMUSG00000021606.9	ENSMUST00000223293.2	757	3	0	0	0	0	multi-exon	FALSE	canonical	3	2374	junction_1	41.5	526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGAGCCGCTTCGCTGC	NA	False	NA	33	True	CATAAA	-10	NA	73476581	73467956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_73468536_73475534_73475589_73476457
transcript_25078.known	chr13	+	717	3	FSM	ENSMUSG00000021607.10	ENSMUST00000221730.2	717	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	303	1205	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACATTAAGCATTCTGTA	9283	False	NA	-3	True	NA	NA	NA	73476631	73479855	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_73476740_73478978_73479211_73479478
transcript_2508.known	chr1	+	191	1	FSM	ENSMUSG00000119668.1	ENSMUST00000101806.4	191	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGGGAATAATATTGGTTA	NA	False	NA	NA	False	NA	NA	NA	72276104	72276295	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_72276100_72276300
transcript_25080.nnic	chr13	-	1421	4	NNC	ENSMUSG00000113346.3	novel	1306	3	NA	NA	-1049	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	23.9768406778059	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTCCTGAGTTCAAATCC	NA	False	NA	0	True	NA	NA	NA	73496552	73492783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_73493358_73494614_73495181_73495337_73495382_73496315
transcript_25081.nnic	chr13	-	1288	3	NNC	ENSMUSG00000113346.3	novel	1306	3	NA	NA	-28	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	18.5	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCCTGAGTTCAAATCCCA	NA	False	NA	2	True	NA	NA	NA	73495531	73492781	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_73493310_73494614_73495181_73495337
transcript_25082.nnic	chr13	-	1145	3	NNC	ENSMUSG00000113346.3	novel	1306	3	NA	NA	-28	2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	18	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCCTGAGTTCAAATCCCA	NA	False	NA	2	True	NA	NA	NA	73495531	73492781	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_73493358_73494805_73495181_73495337
transcript_25083.known	chr13	-	1306	3	FSM	ENSMUSG00000113346.3	ENSMUST00000223470.3	1306	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	10.5	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTCCTGAGTTCAAATCC	NA	False	NA	0	True	NA	NA	NA	73495503	73492783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_73493358_73494614_73495181_73495337
transcript_25086.known	chr13	+	2340	17	FSM	ENSMUSG00000021610.9	ENSMUST00000022102.9	2340	17	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_7	20.082544503872	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTTCTTAACCTCTAAT	NA	False	NA	21	True	AATAAA	-16	NA	73752124	73768724	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_73752519_73753048_73753150_73754340_73754531_73755838_73755988_73757022_73757102_73759262_73759381_73759740_73759836_73760512_73760598_73761776_73761881_73762725_73762792_73763291_73763343_73764081_73764165_73764933_73764969_73765696_73765753_73765837_73765883_73766520_73766637_73768151
transcript_25087.known	chr13	+	5142	24	FSM	ENSMUSG00000017756.10	ENSMUST00000017900.9	5142	24	0	0	0	0	multi-exon	FALSE	canonical	3	635	junction_9	57.8026758755535	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGTGTGCCTCATTTCCA	NA	False	NA	104	True	AGTAAA	-29	NA	73911815	73964873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_73912010_73932637_73932733_73933162_73933286_73936683_73936831_73938059_73938115_73938768_73938900_73940668_73940911_73942042_73942255_73943216_73943385_73943722_73943822_73944885_73944944_73945645_73945821_73946537_73946657_73947061_73947161_73947731_73947852_73948503_73948609_73949046_73949216_73953532_73953729_73954147_73954318_73954424_73954557_73957103_73957212_73958024_73958204_73961657_73961792_73962961
transcript_2509.known	chr1	+	191	1	FSM	ENSMUSG00000119873.1	ENSMUST00001239518.1	191	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGGGAACAATGTTGGTTA	NA	False	NA	NA	False	NA	NA	NA	72283371	72283562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_72283400_72283600
transcript_25092.known	chr13	+	512	2	FSM	ENSMUSG00000017756.10	ENSMUST00000220686.2	512	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAATGGTATGCTCATGT	4997	False	NA	NA	False	AAAAAG	-16	NA	73949059	73950715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_73949216_73950359
transcript_25093.known	chr13	-	4016	10	FSM	ENSMUSG00000021567.16	ENSMUST00000022051.14	4016	10	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	1.49897084035912	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCGCCAAGATGACCCTT	NA	False	NA	NA	False	AATAAA	-17	NA	73995750	73966652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_73969657_73970808_73970937_73971390_73971476_73972367_73972513_73973184_73973281_73973802_73973931_73974995_73975057_73995031_73995136_73995388_73995425_73995521
transcript_25098.known	chr13	-	3399	13	FSM	ENSMUSG00000021569.11	ENSMUST00000022053.11	3399	13	0	0	0	0	multi-exon	FALSE	canonical	3	435	junction_6	23.4319345243955	665	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74085903	74059465	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_74061459_74062606_74062677_74063576_74063690_74066529_74066684_74068113_74068221_74068466_74068554_74069291_74069356_74076029_74076103_74077777_74077869_74078278_74078335_74080976_74081107_74084225_74084392_74085608
transcript_2510.known	chr1	+	191	1	FSM	ENSMUSG00000118790.1	ENSMUST00000240041.1	191	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGGGAATAACACTGGTTA	9773	False	NA	NA	False	NA	NA	NA	72294166	72294357	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_72294200_72294400
transcript_25115.known	chr13	-	1469	7	FSM	ENSMUSG00000021569.11	ENSMUST00000222156.2	1469	7	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_6	185.430729803761	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTTATTTTTATTCTAA	NA	False	NA	-20	True	ATTAAA	-14	NA	74069333	74060576	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_74061459_74062606_74062677_74063576_74063690_74066529_74066684_74068113_74068221_74068466_74068568_74069291
transcript_25117.nic	chr13	+	2489	16	NIC	ENSMUSG00000057649.7	novel	2430	16	NA	NA	-1	0	combination_of_known_junctions	TRUE	canonical	3	32	junction_6	34.8873743478768	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGATCACCCCGTCCGCT	NA	False	NA	23	True	AATAAA	-20	NA	74085928	74109008	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_74086065_74086552_74086768_74086983_74087117_74088355_74088417_74088764_74088910_74090062_74090174_74090749_74090926_74092844_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652_74099765_74102663_74102703_74103540_74103644_74105831_74106000_74108356
transcript_25118.known	chr13	+	2407	16	FSM	ENSMUSG00000057649.7	ENSMUST00000099384.4	2407	16	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_6	21.3306248280625	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCCCGTCCGCTTTGATG	NA	False	NA	29	True	AATAAA	-26	NA	74085956	74109014	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_74086065_74086552_74086768_74086983_74087117_74088355_74088417_74088764_74088910_74090062_74090174_74090809_74090926_74092844_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652_74099765_74102663_74102703_74103540_74103644_74105831_74106000_74108356
transcript_25125.nic	chr13	+	350	2	ISM	ENSMUSG00000057649.7	ENSMUST00000222191.2	4569	13	-71	22230	-61	-564	5prime_fragment	FALSE	canonical	3	174	junction_1	0	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGAAAAAGTCAGAGA	NA	False	NA	NA	False	NA	NA	NA	74085868	74086706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_+_74086065_74086552
transcript_25126.known	chr13	+	2799	8	FSM	ENSMUSG00000057649.7	ENSMUST00000223455.2	2799	8	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_1	52.2326037830701	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATGAAAGAAGAAATAAAGGT	NA	False	NA	NA	False	NA	NA	NA	74086210	74095873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_74086355_74086552_74086768_74086983_74088910_74090062_74090174_74090809_74090926_74092844_74092978_74094202_74094279_74095795
transcript_25127.known	chr13	-	3641	12	FSM	ENSMUSG00000021572.10	ENSMUST00000036456.8	3641	12	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_5	28.6590098045136	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGTGGCTGTTTTTAGATT	NA	False	NA	NA	False	NA	NA	NA	74210418	74184618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198178_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
transcript_25128.nnic	chr13	-	2349	12	NNC	ENSMUSG00000021572.10	novel	3641	12	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_5	30.6737026303942	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTGGTTCACTCTTTTT	NA	False	NA	0	True	NA	NA	NA	74210436	74185751	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198355_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
transcript_25129.nic	chr13	-	2286	12	NIC	ENSMUSG00000021572.10	novel	3641	12	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_5	25.7267908724551	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTGGTTCACTCTTTTT	NA	False	NA	0	True	NA	NA	NA	74210436	74185751	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198418_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
transcript_2513.known	chr1	-	1186	8	FSM	ENSMUSG00000026189.14	ENSMUST00000027381.13	1186	8	0	0	0	0	multi-exon	FALSE	canonical	1	70	junction_5	66.3254191429636	1847	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGTTATCTTTTAAGGATT	NA	False	NA	-6	True	AATAAA	-19	NA	72323473	72298330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_72298593_72301110_72301223_72306565_72306677_72309435_72309533_72314044_72314127_72315324_72315491_72316445_72316580_72323251
transcript_25136.known	chr13	-	1346	7	FSM	ENSMUSG00000021572.10	ENSMUST00000221122.2	1346	7	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_5	26.7934486188114	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATGTTTTAAGAATTTG	9075	False	NA	-72	True	AATAAA	-21	NA	74199615	74185823	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198418_74198484_74199533
transcript_25139.known	chr13	-	4922	13	FSM	ENSMUSG00000034152.7	ENSMUST00000035934.7	4922	13	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_12	37.5695651055774	176	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGGTAGGATTTTTCCT	7173	False	NA	NA	False	AATAAA	-16	NA	74356828	74317606	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_74320364_74321414_74321543_74322105_74322268_74328553_74328677_74330162_74330314_74330395_74330507_74332791_74332893_74337279_74337406_74338188_74338307_74340726_74341409_74347574_74347795_74355025_74355217_74356776
transcript_2514.known	chr1	-	688	4	FSM	ENSMUSG00000026189.14	ENSMUST00000129458.2	688	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	122.10469096458	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGTTATCTTTTAAGGATT	NA	False	NA	-6	True	AATAAA	-19	NA	72323472	72298330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_72298593_72301110_72301223_72306565_72306659_72323251
transcript_25143.known	chr13	-	1262	4	FSM	ENSMUSG00000021576.7	ENSMUST00000220861.2	1262	4	0	0	0	0	multi-exon	FALSE	canonical	3	803	junction_1	15.7550697307953	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTGTATTGTGAATATCTT	NA	False	NA	NA	False	ATTAAA	-16	NA	74465403	74456984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_74457962_74459786_74459832_74464448_74464511_74465225
transcript_25145.known	chr13	-	2900	15	FSM	ENSMUSG00000021577.15	ENSMUST00000022062.8	2900	15	0	0	0	0	multi-exon	FALSE	canonical	3	1480	junction_7	176.694897308026	3931	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGGTCAAGGTGTTCT	NA	False	NA	-8	True	NA	NA	NA	74498399	74470372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_74471293_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476535_74479417_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969_74493057_74498264
transcript_25146.known	chr13	+	369	2	FSM	ENSMUSG00000021578.18	ENSMUST00000223491.2	369	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCAAGAAGAGGATGACTG	4392	False	NA	NA	False	AAAAAG	-38	NA	74498469	74504885	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_74498528_74504574
transcript_25148.known	chr13	+	2682	4	FSM	ENSMUSG00000021578.18	ENSMUST00000160021.8	2682	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	196.493143787654	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAACTGCATTGGCCTGGT	4358	False	NA	NA	False	NA	NA	NA	74498435	74510820	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_74498528_74500974_74501106_74504574_74504937_74508723
transcript_25149.known	chr13	+	762	3	FSM	ENSMUSG00000021578.18	ENSMUST00000162376.2	762	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	206.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACTGGGAACTACTTGT	4406	False	NA	NA	False	NA	NA	NA	74498483	74505167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_74498528_74500980_74501106_74504574
transcript_2515.known	chr1	-	932	7	FSM	ENSMUSG00000026189.14	ENSMUST00000097698.5	932	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	105.091494528445	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AATGAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-45	NA	72323418	72306154	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_72306330_72306565_72306677_72309435_72309533_72314044_72314127_72315324_72315491_72316445_72316580_72323251
transcript_25150.known	chr13	-	4153	5	FSM	ENSMUSG00000069184.5	ENSMUST00000223163.3	4153	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	7.88590514779375	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTAGCTTTTGGTTGTGTT	NA	False	NA	-4	True	NA	NA	NA	74538955	74517444	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_74520947_74523086_74523183_74524554_74524682_74526730_74526986_74538782
transcript_25163.nnic	chr13	+	605	2	Fusion	ENSMUSG00000062382.10_ENSMUSG00000076033.3	novel	491	4	NA	NA	-16	-16	multi-exon	FALSE	canonical	0	0	junction_1	0	4570	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAACAAAAAAAAAAAAAAAA	7946	False	NA	NA	False	NA	NA	NA	74554511	74555449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr13_+_74554630_74554962
transcript_25167.known	chr13	+	938	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	35770	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAGATAA	7962	False	NA	NA	False	NA	NA	NA	74554527	74555465	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_74554500_74555500
transcript_25169.known	chr13	-	1332	4	FSM	ENSMUSG00000112964.2	ENSMUST00000099446.5	1332	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	8.04155872120988	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTAGAATGCAATCAATGT	6499	False	NA	NA	False	NA	NA	NA	74610808	74582899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_74583936_74585699_74585761_74585978_74586106_74610700
transcript_2517.known	chr1	+	2549	21	FSM	ENSMUSG00000026187.10	ENSMUST00000027379.10	2549	21	0	0	0	0	multi-exon	FALSE	canonical	3	464	junction_5	74.8852455427636	1383	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTTGTGTGAAGTCTCA	322	False	NA	22	True	TATAAA	-28	NA	72346585	72434111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_72346727_72349593_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364232_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378257_72379147_72379239_72382167_72382302_72385386_72385584_72393401_72393496_72395975_72396046_72420777_72420888_72422516_72422614_72422860_72422929_72433054_72433127_72433866
transcript_25171.known	chr13	-	1614	4	FSM	ENSMUSG00000112964.2	ENSMUST00000222455.2	1614	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	3.29983164553722	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTAGAATGCAATCAATGT	6469	False	NA	NA	False	NA	NA	NA	74610838	74595390	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_74596679_74598074_74598136_74598354_74598482_74610700
transcript_25173.nnic	chr13	-	1700	6	NNC	ENSMUSG00000069208.10	novel	1549	5	NA	NA	-255	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_5	26.2022899762597	58	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCCTTGGTCATGATGTC	NA	False	NA	NA	False	NA	NA	NA	74642366	74628175	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_74629270_74630657_74630719_74630935_74631063_74632017_74632142_74641968_74642054_74642157
transcript_25177.known	chr13	-	1549	5	FSM	ENSMUSG00000069208.10	ENSMUST00000221173.2	1549	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	20.0546129356814	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCCTTGGTCATGATGTC	NA	False	NA	NA	False	NA	NA	NA	74642111	74628175	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_74629270_74630657_74630719_74630935_74631063_74632017_74632142_74641968
transcript_25178.nnic	chr13	-	1576	5	NNC	ENSMUSG00000069208.10	novel	1549	5	NA	NA	-255	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	25.7815340893439	48	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCCTTGGTCATGATGTC	NA	False	NA	NA	False	NA	NA	NA	74642366	74628175	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_74629270_74630657_74630719_74630935_74631063_74641968_74642054_74642157
transcript_25181.known	chr13	-	1406	4	FSM	ENSMUSG00000069208.10	ENSMUST00000202645.4	1406	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	20.237478982214	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTGGTCATGATGTCTAT	NA	False	NA	NA	False	NA	NA	NA	74642089	74628172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_74629270_74630657_74630719_74630935_74631063_74641968
transcript_25186.nnic	chr13	-	2137	5	NNC	ENSMUSG00000113019.2	novel	395	4	NA	NA	-34	1584	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_3	33.0265045077435	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTCTTGGCTACATTT	NA	False	NA	NA	False	NA	NA	NA	74670614	74656132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_74657816_74659212_74659274_74659474_74659602_74660551_74660676_74670472
transcript_25191.known	chr13	-	395	4	FSM	ENSMUSG00000113019.2	ENSMUST00000220784.2	395	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	21.249836600679	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTGGAGAGAAACCTTATG	NA	False	NA	NA	False	NA	NA	NA	74670580	74657716	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_74657816_74659212_74659274_74659474_74659602_74670472
transcript_25195.known	chr13	-	704	5	FSM	ENSMUSG00000113047.2	ENSMUST00000222092.2	704	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	21.3658606192215	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCAGAACACAGTAGTCTT	NA	False	NA	NA	False	NA	NA	NA	74712375	74702218	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_74702530_74703925_74703987_74704201_74704329_74711857_74711944_74712256
transcript_25197.nic	chr13	-	3422	4	ISM	ENSMUSG00000113047.2	ENSMUST00000222092.2	704	5	371	-2776	-11	2586	3prime_fragment	FALSE	canonical	3	33	junction_3	16.8720676464584	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGACTCTCCAGTTACT	NA	False	NA	1	True	ATTAAA	-21	NA	74712004	74699442	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_74702530_74703925_74703987_74704201_74704329_74711857
transcript_25228.nnic	chr13	-	899	4	NIC	ENSMUSG00000113204.2	novel	1049	11	NA	NA	-14	94	intron_retention	FALSE	canonical	3	22	junction_3	30.1367254727886	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTATGAATGTAATCAGTG	4812	False	NA	NA	False	NA	NA	NA	74765835	74727382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_74727579_74757240_74757302_74758318_74758446_74765320
transcript_25230.known	chr13	-	1288	4	FSM	ENSMUSG00000113204.2	ENSMUST00000221506.2	1288	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	33.95094500403	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACATACTGGAGAGAAACCT	4826	False	NA	NA	False	NA	NA	NA	74765821	74755255	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_74755855_74757240_74757302_74758318_74758446_74765320
transcript_25231.known	chr13	-	631	5	FSM	ENSMUSG00000113204.2	ENSMUST00000222377.2	631	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	41.3060225633018	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTATGAATGTAATCAGTG	4583	False	NA	NA	False	NA	NA	NA	74766064	74755658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_74755855_74757240_74757302_74758318_74758446_74765320_74765407_74765903
transcript_25232.known	chr13	-	5141	32	FSM	ENSMUSG00000021585.11	ENSMUST00000223206.2	5141	32	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_27	33.4677691410694	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTCTTGGCTATGTGTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	74956929	74840486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852325_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74896923_74896981_74902429_74902490_74928621_74928694_74946774_74946838_74956554
transcript_25238.known	chr13	-	2857	30	FSM	ENSMUSG00000021585.11	ENSMUST00000223033.2	2857	30	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_7	32.8082020428457	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCTACTTTCTTAGGAAT	NA	False	NA	NA	False	NA	NA	NA	74918768	74842361	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852322_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74896923_74896981_74902429_74902490_74918664
transcript_25242.known	chr13	-	4765	29	FSM	ENSMUSG00000021585.11	ENSMUST00000222588.2	4765	29	0	0	0	0	multi-exon	TRUE	canonical	3	102	junction_28	16.6207701385947	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTCTTGGCTATGTGTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	74918855	74840486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852325_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74902429_74902490_74918664
transcript_25248.known	chr13	-	2910	31	FSM	ENSMUSG00000021585.11	ENSMUST00000065629.6	2910	31	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_30	32.8517883835873	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACCCAAGGTAAACCTTGG	NA	False	NA	NA	False	AATAAA	-12	NA	74956058	74842406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852325_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74902429_74902490_74928621_74928694_74946774_74946838_74955937
transcript_25249.known	chr13	+	5644	19	FSM	ENSMUSG00000021583.8	ENSMUST00000169114.3	5644	19	0	0	0	0	multi-exon	TRUE	canonical	1	4	junction_16	2.26077666104176	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGCCTTGGTCATGGTGC	NA	False	NA	NA	False	NA	NA	NA	74787686	74841320	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_74788013_74794289_74794834_74805751_74805891_74808388_74808524_74810427_74810549_74811527_74811683_74812227_74812342_74814217_74814350_74814562_74814695_74814836_74814909_74816076_74816232_74817518_74817599_74819426_74819611_74820862_74821020_74821713_74821899_74822740_74822903_74823381_74823523_74823943_74824026_74838692
transcript_25251.known	chr13	+	5040	14	FSM	ENSMUSG00000021587.6	ENSMUST00000022075.6	5040	14	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_5	4.93268293596351	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCTTCATGAGAATAAGAAT	NA	False	NA	NA	False	AATAAA	-20	NA	75237944	75282980	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_75238361_75241201_75241307_75244408_75244520_75246019_75246167_75247395_75247473_75254069_75254159_75258936_75259110_75260660_75260874_75263355_75263457_75273968_75274203_75274842_75275001_75275928_75276063_75278160_75278323_75280060
transcript_25253.nic	chr13	+	880	5	ISM	ENSMUSG00000021587.6	ENSMUST00000135349.2	1419	6	-65	7201	25	-7201	5prime_fragment	FALSE	canonical	3	15	junction_3	3.35410196624968	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTTTTGGAGACTTTTA	NA	False	NA	NA	False	AATAAA	-20	NA	75237969	75247521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_+_75238361_75241201_75241307_75244408_75244520_75246019_75246167_75247395
transcript_25257.nnic	chr13	+	340	2	Genic_Genomic	ENSMUSG00000074800.5	novel	276	1	NA	NA	-32	78	multi-exon	FALSE	canonical	0	0	junction_1	0	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTGCAGGAAATGACTAAT	3131	False	NA	NA	False	AATAAA	-38	NA	75792982	75793368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr13_+_75793204_75793249
transcript_25258.known	chr13	+	276	1	FSM	ENSMUSG00000074800.5	ENSMUST00000099371.5	276	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12573	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAAGCCCTGCTGTCTGAG	3163	False	NA	NA	False	NA	NA	NA	75793014	75793290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_75793000_75793300
transcript_25259.known	chr13	+	4382	12	FSM	ENSMUSG00000001542.8	ENSMUST00000001583.8	4382	12	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_2	37.9194448472108	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAATAATTTTGACGTGTA	5452	False	NA	NA	False	AATAAA	-29	NA	75854875	75920483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_75855917_75873071_75873120_75894410_75894533_75898043_75898208_75904393_75904654_75909996_75910122_75910263_75910349_75911666_75912235_75914272_75914340_75917657_75917830_75918664_75918710_75918798
transcript_25262.known	chr13	+	1333	3	FSM	ENSMUSG00000021591.9	ENSMUST00000223120.2	1333	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	143	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGTCCGGTTCTGTGCT	NA	False	NA	33	True	ATTAAA	-25	NA	75988019	75998273	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_75988295_75995288_75995418_75997344
transcript_25263.known	chr13	+	878	1	FSM	ENSMUSG00000061833.7	ENSMUST00000073790.7	878	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	973	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGTTTTTATATGAGAA	2375	False	NA	NA	False	NA	NA	NA	76102254	76103132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_76102300_76103100
transcript_25266.known	chr13	-	2807	4	FSM	ENSMUSG00000043190.15	ENSMUST00000050997.2	2807	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_3	20.2703943940144	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATTGTGTATGTGTATAA	NA	False	NA	0	True	AATAAA	-21	NA	76166681	76149653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_76151208_76156101_76156137_76156229_76156406_76165639
transcript_25267.known	chr13	-	1436	4	FSM	ENSMUSG00000043190.15	ENSMUST00000179078.9	1436	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	36.2981481009094	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACATAAATAAAAATAAAAGC	NA	False	NA	NA	False	NA	NA	NA	76166789	76150638	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_76151208_76156101_76156137_76156229_76156406_76166133
transcript_25268.nnic	chr13	-	1035	4	NNC	ENSMUSG00000043190.15	novel	595	4	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_3	34.4125300177453	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAAGTAATTTTGTTTC	NA	False	NA	-9	True	NA	NA	NA	76166708	76150885	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_76151208_76156101_76156137_76156229_76156406_76166206
transcript_25269.known	chr13	-	595	4	FSM	ENSMUSG00000043190.15	ENSMUST00000167271.9	595	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_3	32.0555074137902	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAAGTAATTTTGTTTC	NA	False	NA	-9	True	NA	NA	NA	76166838	76150885	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_76151208_76156101_76156137_76156229_76156406_76166776
transcript_25271.known	chr13	-	3657	8	FSM	ENSMUSG00000021592.19	ENSMUST00000239063.2	3657	8	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_3	7.18558647997674	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAATGTATAATTCTTTT	9776	False	NA	NA	False	NA	NA	NA	76246779	76208540	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_76210722_76213398_76213624_76214753_76214979_76220218_76220391_76222893_76223171_76239776_76239937_76242006_76242137_76246492
transcript_2528.known	chr1	+	3059	17	FSM	ENSMUSG00000039354.17	ENSMUST00000047615.15	3059	17	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_6	11.1563813017483	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTATTCCGTTTGTCAC	NA	False	NA	9	True	AATAAA	-16	NA	72622409	72672293	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_72622598_72624796_72625564_72626209_72626261_72630221_72630435_72630983_72631035_72634946_72635134_72636537_72636689_72637929_72638089_72640527_72640594_72650453_72650595_72651967_72652184_72655666_72655738_72659190_72659294_72665621_72665805_72667259_72667361_72668533_72668631_72671979
transcript_25280.known	chr13	+	5381	44	FSM	ENSMUSG00000033991.10	ENSMUST00000091466.4	5381	44	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_18	33.3040145082969	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCCTTTTAAATTTTTTT	NA	False	NA	NA	False	AAGAAA	-39	NA	76246852	76336102	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_76246949_76247489_76247560_76252823_76252888_76254348_76254498_76256311_76256403_76259791_76259936_76260293_76260386_76261156_76261233_76261688_76261830_76266202_76266302_76266396_76266506_76270753_76270895_76271560_76271663_76272879_76273020_76275084_76275172_76275615_76275720_76276742_76276870_76277478_76277659_76278319_76278445_76279326_76279581_76280976_76281080_76282793_76282971_76283065_76283211_76283345_76283425_76283519_76283582_76284536_76284594_76286452_76286522_76287606_76287682_76288646_76288789_76291301_76291396_76293319_76293398_76295830_76295956_76296861_76296986_76298636_76298856_76300028_76300102_76303540_76303595_76303770_76303883_76305367_76305497_76321437_76321560_76323307_76323467_76328162_76328316_76330933_76331065_76333245_76333370_76335718
transcript_25287.nnic	chr13	+	789	5	NNC	ENSMUSG00000033991.10	novel	2116	5	NA	NA	-33	686	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	99.1476172179645	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTATATTATTAGTAT	NA	False	NA	17	True	AATAAA	-18	NA	76328510	76336829	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_76328672_76330933_76331065_76333245_76333370_76335718_76335814_76336551
transcript_25288.nnic	chr13	+	1245	5	NNC	ENSMUSG00000033991.10	novel	2116	5	NA	NA	-33	-940	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	99.1476172179645	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAGAACTGTAACCTGTTT	NA	False	NA	NA	False	ATTAAA	-25	NA	76328510	76337285	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_76328672_76330933_76331065_76333245_76333370_76335718_76335814_76336551
transcript_25289.nnic	chr13	+	2007	5	NNC	ENSMUSG00000033991.10	novel	2116	5	NA	NA	-33	-178	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	99.1476172179645	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAATACTCAGTATTTCATT	NA	False	NA	6	True	ATTAAA	-18	NA	76328510	76338047	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_76328672_76330933_76331065_76333245_76333370_76335718_76335814_76336551
transcript_25290.known	chr13	+	2116	5	FSM	ENSMUSG00000033991.10	ENSMUST00000223902.2	2116	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	121.425903332032	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTCATGTACTATAGTT	NA	False	NA	NA	False	NA	NA	NA	76328543	76338225	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_76328636_76330933_76331065_76333245_76333370_76335718_76335814_76336551
transcript_25296.nnic	chr13	+	800	4	NNC	ENSMUSG00000033991.10	novel	2116	5	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	112.665680469057	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCCTTTTAAATTTTTTT	NA	False	NA	NA	False	AAGAAA	-39	NA	76328510	76336102	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_76328672_76330933_76331065_76333245_76333370_76335718
transcript_25299.known	chr13	-	3747	21	FSM	ENSMUSG00000021597.17	ENSMUST00000151524.9	3747	21	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_14	27.7961777947976	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCATAGTCTTTAGTTG	NA	False	NA	-2	True	AATAAA	-22	NA	77283592	77191206	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_77192150_77194640_77194824_77195228_77195322_77197205_77197337_77197996_77198161_77199267_77199414_77214718_77214867_77231559_77231726_77232450_77232580_77238423_77238588_77239303_77239463_77240476_77240531_77249040_77249176_77251599_77251744_77252652_77252797_77254094_77254224_77260690_77260854_77273348_77273590_77274483_77274560_77274719_77274834_77283471
transcript_2530.nic	chr1	+	1301	5	ISM	ENSMUSG00000039354.17	ENSMUST00000152814.8	1754	6	-19	4384	-19	-3944	5prime_fragment	FALSE	canonical	3	88	junction_2	4.24264068711928	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTCTGCTTTCCTATCAT	NA	False	NA	NA	False	AATAAA	-17	NA	72622390	72631046	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_72622598_72624796_72625564_72626209_72626261_72630221_72630435_72630983
transcript_25309.known	chr13	-	1241	6	FSM	ENSMUSG00000021597.17	ENSMUST00000162320.2	1241	6	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	13.9283882771841	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	GAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAAAG	-45	NA	77283579	77253684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_77254224_77260690_77260854_77273348_77273590_77274483_77274560_77274719_77274834_77283471
transcript_2531.known	chr1	+	2994	17	FSM	ENSMUSG00000039354.17	ENSMUST00000152225.2	2994	17	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	25.2319706671913	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTATTCCGTTTGTCAC	NA	False	NA	9	True	AATAAA	-16	NA	72622773	72672293	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_72622897_72624796_72625564_72626209_72626261_72630221_72630435_72630983_72631035_72634946_72635134_72636537_72636689_72637929_72638089_72640527_72640594_72650453_72650595_72651967_72652184_72655666_72655738_72659190_72659294_72665621_72665805_72667259_72667361_72668533_72668631_72671979
transcript_25315.known	chr13	+	1539	4	FSM	ENSMUSG00000071252.7	ENSMUST00000225605.2	1539	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	17.5562587763516	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACACAATGTTTTTTCATT	NA	False	NA	NA	False	AATAAA	-20	NA	77283672	77341833	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_77283750_77322971_77323104_77331719_77331889_77340672
transcript_2532.known	chr1	+	1227	3	FSM	ENSMUSG00000110712.2	ENSMUST00000211909.2	1227	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTCAAGAATCATTTCATG	NA	False	NA	NA	False	AATAAA	-21	NA	72680401	72682122	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_72681432_72681602_72681647_72681969
transcript_25320.known	chr13	+	616	3	FSM	ENSMUSG00000071252.7	ENSMUST00000225992.2	616	3	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	11	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGAGTGACTTACACTGT	NA	False	NA	NA	False	AATAAA	-17	NA	77283669	77332123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_77283750_77322971_77323104_77331719
transcript_25322.known	chr13	+	5051	20	FSM	ENSMUSG00000071252.7	ENSMUST00000168779.3	5051	20	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_10	16.3230883504439	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTCTTTGATCTTTATGA	NA	False	NA	NA	False	AATAAA	-15	NA	77283658	77761903	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_77283750_77322971_77323104_77331719_77331889_77340672_77341343_77393319_77393482_77402241_77402337_77407959_77408188_77410007_77410274_77411650_77411802_77415780_77415972_77417880_77418064_77429160_77429272_77446585_77446726_77451414_77451580_77464466_77464692_77471483_77471890_77475985_77476143_77480421_77480578_77482387_77482483_77760645
transcript_25325.nic	chr13	+	1301	9	ISM	ENSMUSG00000064138.15	ENSMUST00000091459.12	3892	10	-34	159665	-34	54466	5prime_fragment	FALSE	canonical	3	89	junction_7	9.17877987534291	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTTTATAATATATTCCAT	NA	False	NA	NA	False	ATTAAA	-23	NA	77856774	78154689	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_+_77856973_77907546_77907649_77909956_77910058_77973441_77973508_77982628_77982821_78050772_78050995_78100103_78100224_78147704_78147822_78154506
transcript_25328.known	chr13	+	3876	6	FSM	ENSMUSG00000064138.15	ENSMUST00000224888.2	3876	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	42.511175001404	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAACACAAAAAGG	NA	False	NA	NA	False	AATATA	-21	NA	77856847	77988640	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_77856973_77907546_77907649_77909956_77910058_77973441_77973508_77982628_77982821_77985350
transcript_25329.known	chr13	+	3892	10	FSM	ENSMUSG00000064138.15	ENSMUST00000091459.12	3892	10	0	0	0	0	multi-exon	TRUE	canonical	3	89	junction_7	8.92907582349531	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAACTGTGTCTTCTGTCT	NA	False	NA	NA	False	AATAAA	-13	NA	77856808	78314354	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_77856973_77907546_77907649_77909956_77910058_77973441_77973508_77982628_77982821_78050772_78050995_78100103_78100224_78147704_78147822_78154506_78154592_78311631
transcript_2533.known	chr1	+	1238	2	FSM	ENSMUSG00000110712.2	ENSMUST00000212057.2	1238	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTCAAGAATCATTTCATG	NA	False	NA	NA	False	AATAAA	-21	NA	72680346	72682122	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_72681432_72681969
transcript_25332.known	chr13	+	4101	8	FSM	ENSMUSG00000074794.11	ENSMUST00000099356.10	4101	8	0	0	0	0	multi-exon	TRUE	canonical	3	173	junction_5	15.8461995701281	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTGGCAGTTTATTTGA	NA	False	NA	30	True	AATAAA	-30	NA	81031528	81044161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_81032049_81035524_81035607_81037207_81037356_81038214_81038318_81038652_81038910_81039180_81039344_81039606_81039762_81041488
transcript_25334.known	chr13	-	2580	9	FSM	ENSMUSG00000069170.15	ENSMUST00000128585.9	2580	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	12.4172259381876	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAACCCCACACAA	2372	False	NA	NA	False	NA	NA	NA	81781258	81725554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_81726512_81726838_81727116_81727403_81727970_81729810_81729925_81732159_81732265_81740676_81740773_81741108_81741259_81743295_81743478_81781125
transcript_25336.known	chr13	-	1592	7	FSM	ENSMUSG00000069170.15	ENSMUST00000146749.2	1592	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	8.51958527942137	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTTTAAAGTGTATATGA	2370	False	NA	NA	False	AATAAA	-18	NA	81781260	81727159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_81727970_81729810_81729925_81732159_81732265_81740676_81740773_81741108_81741259_81743295_81743478_81781125
transcript_25338.nic	chr13	-	1191	6	ISM	ENSMUSG00000069170.15	ENSMUST00000146749.2	1592	7	-58	2300	-45	0	5prime_fragment	FALSE	canonical	3	24	junction_1	7.78716893357271	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTGAACAGGGACATGAG	2312	False	NA	NA	False	NA	NA	NA	81781318	81729459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_81729925_81732159_81732265_81740676_81740773_81741108_81741259_81743295_81743478_81781125
transcript_25339.nic	chr13	-	1060	6	ISM	ENSMUSG00000069170.15	ENSMUST00000146749.2	1592	7	-58	2431	-45	-131	5prime_fragment	FALSE	canonical	3	24	junction_1	7.78716893357271	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGGTGTGGGAGTCACTT	2312	False	NA	NA	False	AATAAA	-16	NA	81781318	81729590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_81729925_81732159_81732265_81740676_81740773_81741108_81741259_81743295_81743478_81781125
transcript_25341.known	chr13	+	4250	3	FSM	ENSMUSG00000035840.8	ENSMUST00000224300.2	4250	3	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	12	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAGTTGTTGAATATAAT	289	False	NA	27	True	AATAAA	-29	NA	81805781	81820990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_81806056_81813123_81813389_81817279
transcript_25343.known	chr13	+	2338	3	FSM	ENSMUSG00000035840.8	ENSMUST00000049055.8	2338	3	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_2	38	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCACATTACCTCATTTT	455	False	NA	NA	False	AATAAA	-17	NA	81805947	81819303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_81806056_81813123_81813389_81817338
transcript_25344.known	chr13	-	3054	8	FSM	ENSMUSG00000035834.12	ENSMUST00000048993.12	3054	8	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_2	24.1119836409624	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATGATTTGCAGTGAACA	NA	False	NA	-6	True	AATAAA	-18	NA	81859132	81821961	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_81824242_81826234_81826379_81830230_81830314_81835244_81835296_81837315_81837376_81842766_81842897_81847862_81848013_81858976
transcript_25352.nic	chr13	-	556	5	ISM	ENSMUSG00000035834.12	ENSMUST00000048993.12	3054	8	-10	13284	-10	6719	5prime_fragment	FALSE	canonical	3	275	junction_1	7.29297607290741	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTACACTGGCTAATAGACT	NA	False	NA	NA	False	NA	NA	NA	81859142	81835245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_81835296_81837315_81837376_81842766_81842897_81847862_81848013_81858976
transcript_25354.known	chr13	-	424	4	FSM	ENSMUSG00000035834.12	ENSMUST00000161093.8	424	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	130.922368855237	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCTAAGACACAGGCTGCA	NA	False	NA	NA	False	NA	NA	NA	81859075	81841964	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_81842010_81842766_81842897_81847862_81848013_81858976
transcript_25355.known	chr13	-	733	3	FSM	ENSMUSG00000035834.12	ENSMUST00000161920.2	733	3	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_2	6.5	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAATGCTGTGATTACTGC	NA	False	NA	NA	False	NA	NA	NA	81859064	81842401	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_81842897_81847862_81848013_81858976
transcript_25356.known	chr13	-	658	2	FSM	ENSMUSG00000035834.12	ENSMUST00000160331.2	658	2	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCATGATGCCCCTGGTGT	NA	False	NA	NA	False	AATATA	-40	NA	81859121	81847499	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_81848013_81858976
transcript_25358.known	chr13	+	3957	2	FSM	ENSMUSG00000051098.7	ENSMUST00000057598.7	3957	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTGCTTTTTATAGAACA	NA	False	NA	NA	False	ATTAAA	-25	NA	81859459	81901394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_81860102_81898079
transcript_25359.known	chr13	+	676	2	FSM	ENSMUSG00000051098.7	ENSMUST00000224299.2	676	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTACACTGGTCATTTGT	NA	False	NA	NA	False	NA	NA	NA	81859648	81898465	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_81859939_81898079
transcript_25373.known	chr13	-	4608	2	FSM	ENSMUSG00000097793.2	ENSMUST00000181520.2	4608	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAATATCGTT	NA	False	NA	NA	False	AATAAA	-17	NA	81931868	81926891	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_81931445_81931813
transcript_25374.known	chr13	+	1226	5	FSM	ENSMUSG00000021537.10	ENSMUST00000022009.10	1226	5	0	0	0	0	multi-exon	FALSE	canonical	3	1314	junction_2	32.392128673491	8394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACAATAGTCTGGAACATT	NA	False	NA	NA	False	AATAAA	-15	NA	81931195	81945274	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_81931477_81932759_81932896_81934961_81935077_81940074_81940267_81944772
transcript_25375.known	chr13	+	628	4	FSM	ENSMUSG00000021537.10	ENSMUST00000224574.2	628	4	0	0	0	0	multi-exon	FALSE	canonical	1	20	junction_1	629.444728841752	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGAGAGTAAGTTTACCT	NA	False	NA	NA	False	NA	NA	NA	81931641	81940258	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_81931835_81932759_81932896_81934961_81935077_81940074
transcript_25376.known	chr13	-	1491	1	FSM	ENSMUSG00000097292.3	ENSMUST00000185973.2	1491	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTACCTGTTTTTTTTTAT	NA	False	NA	NA	False	ATTAAA	-18	NA	84370219	84368728	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_84368700_84370200
transcript_25379.known	chr13	+	2857	12	FSM	ENSMUSG00000035762.12	ENSMUST00000057495.10	2857	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	57.0470300398157	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAATACAATAAGAG	NA	False	NA	NA	False	NA	NA	NA	84370418	84444260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_84370554_84399348_84399453_84405879_84405964_84408261_84408360_84420289_84420447_84430829_84430982_84431422_84431484_84432103_84432245_84434803_84434918_84440497_84440673_84441499_84441597_84442721
transcript_25381.known	chr13	+	2632	12	FSM	ENSMUSG00000035762.12	ENSMUST00000223827.2	2632	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	68.3415099589633	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTGTAATTTATTTGTT	NA	False	NA	21	True	ATTAAA	-22	NA	84370432	84443989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_84370554_84399348_84399453_84405879_84405964_84408261_84408360_84420289_84420447_84430829_84430982_84431422_84431484_84432103_84432305_84434803_84434918_84440497_84440673_84441499_84441597_84442721
transcript_25383.nic	chr13	+	2552	12	NIC	ENSMUSG00000035762.12	novel	2857	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	69.776028941722	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTGTAATTTATTTGTT	NA	False	NA	21	True	ATTAAA	-22	NA	84370414	84443989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_84370554_84399348_84399453_84405879_84405964_84408261_84408360_84420289_84420447_84430867_84430982_84431422_84431484_84432103_84432245_84434803_84434918_84440497_84440673_84441499_84441597_84442721
transcript_25386.nic	chr13	+	2485	11	NIC	ENSMUSG00000035762.12	novel	2857	12	NA	NA	1	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_9	71.7933840963079	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTGTAATTTATTTGTT	NA	False	NA	21	True	ATTAAA	-22	NA	84370415	84443989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_84370554_84405879_84405964_84408261_84408360_84420289_84420447_84430829_84430982_84431422_84431484_84432103_84432245_84434803_84434918_84440497_84440673_84441499_84441597_84442721
transcript_25388.known	chr13	+	2414	11	FSM	ENSMUSG00000035762.12	ENSMUST00000225069.2	2414	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	81.3373223065525	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACAGAGTGTAATTTATT	NA	False	NA	17	True	ATTAAA	-18	NA	84370444	84443985	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_84370554_84405879_84405964_84408261_84408360_84420289_84420447_84430867_84430982_84431422_84431484_84432103_84432245_84434803_84434918_84440497_84440673_84441499_84441597_84442721
transcript_25392.known	chr13	+	1428	3	FSM	ENSMUSG00000035762.12	ENSMUST00000225212.2	1428	3	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_1	6	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATGATAAAAAAATAAT	NA	False	NA	NA	False	NA	NA	NA	84370431	84407081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_84370554_84399348_84399453_84405879
transcript_25393.known	chr13	-	4563	25	FSM	ENSMUSG00000021549.15	ENSMUST00000109552.3	4563	25	0	0	0	0	multi-exon	TRUE	canonical	3	186	junction_11	23.7235232534199	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCTAGATCCATAAAGCAT	NA	False	NA	NA	False	AATAAA	-29	NA	85437148	85362898	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_85364307_85364995_85365131_85366300_85366379_85367524_85367614_85369589_85369658_85371576_85371664_85372321_85372438_85373600_85373744_85374652_85374813_85375070_85375244_85376349_85376427_85376726_85376885_85377723_85377802_85378506_85378595_85381707_85381865_85382478_85382600_85386257_85386337_85392306_85392458_85394709_85394763_85398550_85398583_85400544_85400663_85403502_85403574_85404457_85404594_85406436_85406590_85436514
transcript_25394.known	chr13	+	2045	9	FSM	ENSMUSG00000021548.11	ENSMUST00000022030.11	2045	9	0	0	0	0	multi-exon	FALSE	canonical	3	824	junction_5	83.2840583485219	1182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCAGTGTTTTGTTTTGA	NA	False	NA	8	True	AATAAA	-19	NA	85337526	85361842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_85337772_85338872_85338996_85344370_85344445_85345469_85345681_85350451_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
transcript_25395.known	chr13	+	1055	9	FSM	ENSMUSG00000021548.11	ENSMUST00000163600.8	1055	9	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_4	292.63455772516	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTTGTGATTGTTTTA	NA	False	NA	15	True	ATTAAA	-22	NA	85337595	85361029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_85337772_85338872_85338996_85344370_85344445_85345469_85345681_85350559_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
transcript_25396.known	chr13	+	527	5	FSM	ENSMUSG00000021548.11	ENSMUST00000165077.8	527	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	409.038124751227	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTATCTTTTATACACACC	NA	False	NA	NA	False	AAAACA	-37	NA	85337553	85350532	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_85337772_85338872_85338996_85344370_85344445_85345649_85345681_85350451
transcript_25397.known	chr13	-	540	3	FSM	ENSMUSG00000017778.15	ENSMUST00000131011.2	540	3	0	0	0	0	multi-exon	FALSE	canonical	3	10515	junction_1	2196	108596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAATGCCTCGTCTCTGCA	NA	False	NA	-14	True	AATAAA	-16	NA	86195023	86192934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_86193028_86193845_86193989_86194719
transcript_25400.known	chr13	-	433	3	FSM	ENSMUSG00000017778.15	ENSMUST00000078764.9	433	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	5251.5	1888	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAATGCCTCGTCTCTGCA	NA	False	NA	-14	True	AATAAA	-16	NA	86194579	86192934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_86193028_86193845_86193989_86194382
transcript_25403.known	chr13	-	709	2	FSM	ENSMUSG00000017778.15	ENSMUST00000132233.2	709	2	0	0	0	0	multi-exon	FALSE	canonical	3	10515	junction_1	0	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATTCAATGCCTCGTCT	NA	False	NA	-19	True	AATAAA	-11	NA	86194466	86192939	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_86193028_86193845
transcript_25404.known	chr13	-	315	3	FSM	ENSMUSG00000017778.15	ENSMUST00000017922.9	315	3	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_2	5048	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGATGATCTGAAAATTG	NA	False	NA	-93	True	AAGAAA	-5	NA	86194893	86193013	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_86193028_86193845_86193973_86194719
transcript_25405.known	chr13	-	2321	13	FSM	ENSMUSG00000021614.17	ENSMUST00000109543.9	2321	13	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_7	15.55813470682	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGCGAATAAAATGAAAG	2871	False	NA	-42	True	AATGAA	-15	NA	89890363	89805174	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_89805478_89805621_89805805_89810035_89810181_89826193_89826277_89827918_89828078_89832518_89832633_89833197_89833312_89860323_89860618_89869685_89869814_89869890_89870066_89873407_89873783_89879577_89879654_89890191
transcript_25407.known	chr13	-	2273	6	FSM	ENSMUSG00000021614.17	ENSMUST00000159337.8	2273	6	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	6.6932802122726	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGTTTGTTATTTATTAGT	2797	False	NA	NA	False	ATTAAA	-17	NA	89890437	89859344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_89860618_89869685_89869814_89869890_89870066_89873407_89873783_89879577_89879654_89890191
transcript_25410.nic	chr13	-	2042	3	ISM	ENSMUSG00000021614.17	ENSMUST00000159337.8	2273	6	-400	13118	-209	1090	5prime_fragment	FALSE	canonical	3	54	junction_2	6.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCTCAGCTTCTTTACTG	2397	False	NA	NA	False	NA	NA	NA	89890837	89872462	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_89873783_89879577_89879654_89890191
transcript_25411.nic	chr13	-	1320	3	ISM	ENSMUSG00000021614.17	ENSMUST00000159337.8	2273	6	-400	13840	-209	368	5prime_fragment	FALSE	canonical	3	54	junction_2	6.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCAAGACATGGTACATGG	2397	False	NA	NA	False	AATAAA	-27	NA	89890837	89873184	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_89873783_89879577_89879654_89890191
transcript_25412.known	chr13	-	12427	15	FSM	ENSMUSG00000021614.17	ENSMUST00000109546.9	12427	15	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_8	18.7382616317414	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGACTTGTCTGTTTA	2606	False	NA	-1	True	AAGAAA	-23	NA	89890628	89803430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_89805478_89805621_89805805_89810035_89810181_89826193_89826277_89827918_89828078_89832518_89832633_89833197_89833312_89836403_89841621_89851036_89853917_89860323_89860618_89869685_89869814_89869890_89870066_89873407_89873783_89879577_89879654_89890191
transcript_25419.known	chr13	-	1540	8	FSM	ENSMUSG00000021615.14	ENSMUST00000022115.14	1540	8	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	13.6993966796993	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAATGTTATTTAACTG	NA	False	NA	-7	True	AATAAA	-14	NA	90237727	89997039	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_89997583_90089080_90089229_90139191_90139284_90140572_90140726_90149036_90149204_90210127_90210304_90219659_90219809_90237615
transcript_25421.nnic	chr13	-	800	4	NNC	ENSMUSG00000021615.14	novel	424	4	NA	NA	-7	51761	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	72.4982758415674	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCGTTTTTATAATTACCT	NA	False	NA	NA	False	ATTAAA	-15	NA	90237734	90158397	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_90158754_90210127_90210304_90219659_90219809_90237615
transcript_25430.known	chr13	+	1541	4	FSM	ENSMUSG00000012422.15	ENSMUST00000012566.9	1541	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	564.815013964749	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGTTCTCTCACTCCAG	NA	False	NA	-32	True	AATACA	-25	NA	90237880	90252780	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_90237903_90246480_90246591_90249026_90249062_90251406
transcript_25437.known	chr13	+	658	4	FSM	ENSMUSG00000049517.9	ENSMUST00000224463.2	658	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	9398.7280108652	6973	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAAATATTTTGTGTCTT	NA	False	NA	NA	False	AATAAA	-13	NA	91071335	91072842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_91071526_91071705_91071866_91072444_91072566_91072655
transcript_25441.known	chr13	+	937	4	FSM	ENSMUSG00000049517.9	ENSMUST00000051955.9	937	4	0	0	0	0	multi-exon	FALSE	canonical	3	13520	junction_1	3048.72640075601	295595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGGTCTATAGGATAATT	NA	False	NA	27	True	AATAAA	-23	NA	91071076	91073069	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_91071319_91071705_91071866_91072444_91072566_91072655
transcript_25446.nnic	chr13	-	1730	8	NNC	ENSMUSG00000021619.7	novel	1583	8	NA	NA	6049	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	7.14856914468389	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATTGACTACTGTTACTT	4929	False	NA	NA	False	ATTAAA	-15	NA	91366029	91083474	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_91084365_91084705_91084822_91085411_91085510_91170688_91170787_91188968_91189108_91302335_91302432_91356436_91356553_91365852
transcript_25447.known	chr13	-	1583	8	FSM	ENSMUSG00000021619.7	ENSMUST00000022119.6	1583	8	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_7	11.5121940673747	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATTGACTACTGTTACTT	NA	False	NA	NA	False	ATTAAA	-15	NA	91372087	91083474	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_91084365_91084705_91084822_91085411_91085510_91170688_91170787_91188968_91189108_91302335_91302432_91356436_91356553_91372057
transcript_25448.nnic	chr13	-	1227	8	NNC	ENSMUSG00000021619.7	novel	1583	8	NA	NA	6063	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	14.4660051888021	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATGACACATCTTAAAT	4943	False	NA	NA	False	ATTAAA	-37	NA	91366015	91083987	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_91084365_91084705_91084822_91085411_91085510_91170688_91170787_91188968_91189108_91302335_91302432_91356436_91356553_91365828
transcript_25449.nnic	chr13	-	1217	8	NNC	ENSMUSG00000021619.7	novel	1583	8	NA	NA	6049	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	7.14856914468389	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATGACACATCTTAAAT	4929	False	NA	NA	False	ATTAAA	-37	NA	91366029	91083987	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_91084365_91084705_91084822_91085411_91085510_91170688_91170787_91188968_91189108_91302335_91302432_91356436_91356553_91365852
transcript_25453.known	chr13	-	922	7	FSM	ENSMUSG00000021619.7	ENSMUST00000224449.2	922	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	15.8184140236062	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATGACACATCTTAAAT	NA	False	NA	NA	False	ATTAAA	-37	NA	91372078	91083987	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_91084365_91084705_91084822_91085411_91085510_91170688_91170787_91302335_91302432_91356436_91356553_91372057
transcript_25460.known	chr13	+	3957	17	FSM	ENSMUSG00000003992.16	ENSMUST00000004094.15	3957	17	0	0	0	0	multi-exon	TRUE	canonical	3	38	junction_13	7.3396930283221	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTTTGATAATTTGATGGA	2721	False	NA	NA	False	NA	NA	NA	91609168	91851548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_91609368_91672703_91672777_91687453_91687516_91712728_91712814_91790420_91790511_91812236_91812297_91817794_91817862_91818512_91818584_91823176_91823245_91828708_91828758_91831800_91831837_91833329_91833385_91836914_91836986_91838978_91839058_91841149_91841179_91842137_91842237_91848784
transcript_25466.known	chr13	+	1633	16	FSM	ENSMUSG00000003992.16	ENSMUST00000042122.15	1633	16	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	12.5973542195706	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTTTCATTCACTGTGTC	2762	False	NA	-6	True	AATAAA	-14	NA	91609209	91849355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_91609368_91672703_91672777_91687453_91687516_91712728_91712814_91812236_91812297_91817794_91817862_91818512_91818584_91823176_91823245_91828708_91828758_91831800_91831837_91833329_91833385_91836914_91836986_91838978_91839058_91841149_91841179_91842137_91842237_91848784
transcript_25468.known	chr13	+	822	4	FSM	ENSMUSG00000003992.16	ENSMUST00000144659.2	822	4	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	6.12825877028341	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAACC	-9	True	NA	NA	False	AATATA	-15	NA	91609281	91713329	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_91609368_91672703_91672777_91687453_91687516_91712728
transcript_25469.known	chr13	-	1541	6	FSM	ENSMUSG00000021621.16	ENSMUST00000022121.13	1541	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_2	29.1108227296997	713	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTTGTTGAACTGATCA	NA	False	NA	NA	False	AATAAA	-16	NA	91955824	91944651	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_91945374_91946941_91947011_91948729_91948823_91948984_91949136_91953869_91954280_91955728
transcript_25470.known	chr13	-	929	3	FSM	ENSMUSG00000021621.16	ENSMUST00000070886.9	929	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	63.5	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCTTTGTTGAACTGATC	NA	False	NA	NA	False	AATAAA	-15	NA	91949099	91944652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_91945374_91948729_91948823_91948984
transcript_25472.known	chr13	-	3937	24	FSM	ENSMUSG00000014850.16	ENSMUST00000022220.13	3937	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	29.9229002971439	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTGCTCATTGCATGGCG	NA	False	NA	NA	False	AATAAA	-14	NA	92491511	92348393	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_92349055_92351977_92352150_92357463_92357594_92359617_92359805_92372081_92372237_92386334_92386447_92393202_92393311_92400228_92400346_92402434_92402500_92410459_92410629_92411237_92411426_92422384_92422518_92435660_92435771_92436781_92436867_92445952_92446068_92449081_92449195_92478753_92478921_92481463_92481610_92483240_92483359_92483836_92483954_92485656_92485846_92487738_92487960_92489732_92489851_92491270
transcript_25474.known	chr13	-	3946	24	FSM	ENSMUSG00000014850.16	ENSMUST00000185852.7	3946	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	25.3850498550558	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCGTATTGTATTTTGTT	NA	False	NA	NA	False	AATAAA	-28	NA	92491503	92348379	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_92349055_92351977_92352150_92357463_92357594_92359617_92359805_92372081_92372240_92386334_92386447_92393202_92393311_92400228_92400346_92402434_92402500_92410459_92410629_92411237_92411426_92422384_92422518_92435660_92435771_92436781_92436867_92445952_92446068_92449081_92449195_92478753_92478921_92481463_92481610_92483240_92483359_92483836_92483954_92485656_92485846_92487738_92487960_92489732_92489851_92491270
transcript_25476.nic	chr13	-	1478	9	NIC	ENSMUSG00000014850.16	novel	1753	9	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	42.9314497192909	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCTAAGTGTAAGAACATT	NA	False	NA	NA	False	AATAAA	-22	NA	92491518	92477179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_92477334_92478753_92478921_92481463_92481610_92483240_92483359_92483836_92483954_92485656_92485846_92487738_92487960_92489732_92489851_92491270
transcript_25478.known	chr13	-	666	3	FSM	ENSMUSG00000014850.16	ENSMUST00000187424.2	666	3	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	15	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTGCTAGATGAGAGAAC	NA	False	NA	NA	False	AATAAA	-20	NA	92491493	92487634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_92487960_92489732_92489851_92491270
transcript_25479.known	chr13	-	4254	25	FSM	ENSMUSG00000014850.16	ENSMUST00000191550.7	4254	25	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	35.61773805127	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCATTGCATGGCGTATT	NA	False	NA	NA	False	AATAAA	-18	NA	92491507	92348389	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_92349055_92351977_92352150_92357463_92357594_92359617_92359805_92372081_92372240_92386334_92386447_92393202_92393311_92400228_92400346_92402434_92402500_92410459_92410629_92411237_92411426_92422384_92422518_92435660_92435771_92436781_92436867_92445952_92446068_92449081_92449195_92478753_92478921_92481463_92481591_92481678_92481729_92482866_92483359_92483836_92483954_92485656_92485846_92487738_92487869_92489732_92489851_92491270
transcript_25488.known	chr13	+	5347	6	FSM	ENSMUSG00000021707.6	ENSMUST00000022218.6	5347	6	0	0	0	0	multi-exon	FALSE	canonical	3	1135	junction_5	174.184270242752	1483	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTCAAATTCTGAAAAGGAA	NA	False	NA	NA	False	AAGAAA	-37	NA	92491233	92525561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_92491853_92492157_92492208_92494434_92494541_92502172_92502300_92504692_92504809_92521232
transcript_25489.known	chr13	-	1152	6	FSM	ENSMUSG00000034334.9	ENSMUST00000040106.9	1152	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	1.62480768092719	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGTAACAGTGTTCAAGCT	NA	False	NA	NA	False	AATAAA	-15	NA	92620521	92586340	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_92586761_92603484_92603621_92604452_92604671_92610470_92610637_92614335_92614462_92620435
transcript_25490.known	chr13	-	1196	5	FSM	ENSMUSG00000034334.9	ENSMUST00000225299.2	1196	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_4	1.4790199457749	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAGTTAGATGTACAGTA	NA	False	NA	NA	False	AATAAA	-15	NA	92620523	92586132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_92586761_92603484_92603621_92604452_92604671_92614335_92614462_92620435
transcript_25491.known	chr13	-	6150	18	FSM	ENSMUSG00000021706.15	ENSMUST00000022217.9	6150	18	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_14	7.96662588726756	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCTCATTTTGTTTACATA	NA	False	NA	NA	False	AATAAA	-44	NA	92667376	92623615	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_92625132_92629010_92629179_92630365_92630472_92631442_92631606_92636720_92636802_92640446_92640595_92640983_92641089_92642167_92642251_92644629_92644855_92645398_92645555_92646508_92646632_92647985_92648365_92650294_92650438_92653038_92653201_92655974_92656072_92657623_92659840_92660737_92660847_92667206
transcript_25494.known	chr13	+	5366	12	FSM	ENSMUSG00000021703.10	ENSMUST00000049488.9	5366	12	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_8	5.03377025451168	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTGTTTGTTTTCTAT	NA	False	NA	5	True	AATAAA	-15	NA	92747598	92848455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_92747796_92797525_92797694_92819262_92819445_92819863_92819947_92821652_92821747_92825126_92825339_92827451_92827548_92829979_92830107_92838184_92838252_92842018_92842059_92842647_92842793_92844500
transcript_25496.known	chr13	+	6275	9	FSM	ENSMUSG00000021704.9	ENSMUST00000076169.4	6275	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.11803398874989	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTGGTGTATATCATTTA	NA	False	NA	27	True	AATAAA	-28	NA	92981294	92994738	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_92981376_92981713_92981784_92982128_92982206_92983368_92983462_92984045_92984229_92984324_92984402_92985425_92985584_92986797_92986887_92989291
transcript_25499.known	chr13	-	2990	15	FSM	ENSMUSG00000042167.7	ENSMUST00000048702.7	2990	15	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_4	92.51905484928	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGTTGAGGTGTTATTT	NA	False	NA	NA	False	AATAAA	-13	NA	93328791	93282790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_93284174_93285388_93285469_93287191_93287284_93291432_93291570_93296152_93296197_93304433_93304563_93304898_93304976_93308330_93308401_93311147_93311227_93312026_93312119_93312205_93312321_93320586_93320825_93322315_93322406_93322810_93322985_93328601
transcript_25500.known	chr13	-	2490	8	FSM	ENSMUSG00000074768.7	ENSMUST00000099309.6	2490	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	5.15474815790535	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGGTAAATGTATTCTCT	NA	False	NA	NA	False	NA	NA	NA	93774469	93753182	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_93754171_93756589_93756819_93757901_93758085_93761321_93761470_93761804_93761997_93763754_93763874_93769743_93769877_93773971
transcript_25501.known	chr13	-	2467	8	FSM	ENSMUSG00000042118.8	ENSMUST00000015941.8	2467	8	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	2.60298102261266	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCGGTTTGTTGCGTTCTT	NA	False	NA	NA	False	NA	NA	NA	93810810	93792227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_93793653_93798809_93799039_93799653_93799837_93800181_93800330_93803081_93803274_93805762_93805855_93807920_93808054_93810745
transcript_25509.nnic	chr13	+	609	5	Intergenic	novelGene_31	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	1.29903810567666	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTTGTTTTGTTTTTTTA	NA	False	NA	NA	False	AAGAAA	-5	NA	94164296	94193287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr13_+_94164528_94166182_94166256_94191410_94191535_94193009_94193109_94193205
transcript_25510.nnic	chr13	+	607	5	Intergenic	novelGene_33	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	1.80277563773199	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTTGTTTTGTTTTTTTA	NA	False	NA	NA	False	AAGAAA	-5	NA	94165874	94193287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr13_+_94166104_94166182_94166256_94191410_94191535_94193009_94193109_94193205
transcript_25512.nnic	chr13	+	434	4	Intergenic	novelGene_32	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0.816496580927726	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTTGTTTTGTTTTTTTA	NA	False	NA	NA	False	AAGAAA	-5	NA	94164350	94193287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr13_+_94164528_94166182_94166256_94193006_94193109_94193205
transcript_25515.nnic	chr13	+	312	3	Intergenic	novelGene_34	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_2	1	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTTGTTTTGTTTTTTTA	2370	False	NA	NA	False	AAGAAA	-5	NA	94169561	94193287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr13_+_94169690_94193006_94193109_94193205
transcript_25516.known	chr13	+	4348	4	FSM	ENSMUSG00000045312.13	ENSMUST00000054274.8	4348	4	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	5.35412613473634	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTTTCAAGTTTGTTGGC	2226	False	NA	9	True	ATTAAA	-18	NA	94194303	94331917	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_94194415_94257284_94257344_94310530_94311147_94328355
transcript_25517.known	chr13	-	4259	9	FSM	ENSMUSG00000021687.15	ENSMUST00000022197.15	4259	9	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_5	9.45300878027732	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATATAGTATAAAAGAGT	NA	False	NA	NA	False	ATTAAA	-30	NA	94422337	94337817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_94340672_94344643_94344762_94347084_94347187_94361402_94361563_94366221_94366351_94368579_94368689_94369589_94369689_94389500_94389579_94421727
transcript_25522.known	chr13	+	4021	27	FSM	ENSMUSG00000021686.7	ENSMUST00000022196.5	4021	27	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_8	45.9393251760748	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTCTCCTAATCCTTAC	NA	False	NA	9	True	AATAAA	-19	NA	94495467	94702825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_94495740_94527299_94527376_94531226_94531302_94539845_94539942_94540454_94540616_94545284_94545352_94554468_94554652_94576762_94576922_94580426_94580525_94582429_94582485_94582573_94582646_94584960_94585024_94587460_94587594_94591903_94592014_94598903_94599081_94608183_94608371_94609306_94609438_94613473_94613637_94616234_94616383_94619720_94619869_94630176_94630250_94638425_94638533_94664672_94664905_94668489_94668575_94679286_94679385_94684262_94684402_94702112
transcript_25527.known	chr13	+	633	5	FSM	ENSMUSG00000042043.7	ENSMUST00000220819.2	633	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	650.566820165308	2659	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAATTTTCAGTTGGCCA	NA	False	NA	37	True	AATAAA	-37	NA	94925417	94979430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_94925511_94951618_94951693_94968867_94968974_94973615_94973703_94979157
transcript_25529.known	chr13	+	497	4	FSM	ENSMUSG00000042043.7	ENSMUST00000220825.2	497	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	614.919506927533	2337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTGTTTGTTTTATACT	NA	False	NA	15	True	AATAAA	-15	NA	94954241	94979408	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_94954295_94968867_94968974_94973615_94973703_94979157
transcript_25536.known	chr13	+	559	4	FSM	ENSMUSG00000042043.7	ENSMUST00000046644.7	559	4	0	0	0	0	multi-exon	FALSE	canonical	3	1242	junction_3	49.6185449202211	24073	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAATTTTCAGTTGGCCA	NA	False	NA	37	True	AATAAA	-37	NA	94925417	94979430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_94925511_94968867_94968974_94973615_94973703_94979157
transcript_25539.nic	chr13	-	1004	4	ISM	ENSMUSG00000021684.18	ENSMUST00000162882.2	2060	9	12825	606	1012	167	3prime_fragment	TRUE	canonical	1	2	junction_3	2.44948974278318	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACTCAGTGACAAAACGAG	NA	False	NA	NA	False	AATAAA	-17	NA	95169749	95162443	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_95162738_95164125_95164256_95166820_95166989_95169337
transcript_25540.known	chr13	+	1894	2	FSM	ENSMUSG00000041995.9	ENSMUST00000045909.8	1894	2	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	0	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCGGTGTTCTGCTTGCATG	NA	False	NA	38	True	NA	NA	NA	95461744	95474349	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_95461853_95472563
transcript_25541.known	chr13	-	3249	14	FSM	ENSMUSG00000021681.9	ENSMUST00000022189.9	3249	14	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_4	22.6835706778766	256	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTCTTCTTTGTATTTGC	NA	False	NA	27	True	AATAAA	-14	NA	95511860	95487190	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_95488211_95489254_95489355_95490457_95490586_95492900_95492984_95493704_95493871_95495217_95495320_95498976_95499029_95499344_95499457_95501188_95501511_95504887_95505077_95505904_95506067_95507264_95507468_95508048_95508152_95511353
transcript_25542.nnic	chr13	-	686	4	Fusion	ENSMUSG00000021679.5_ENSMUSG00000021678.10	novel	399	2	NA	NA	-34	0	multi-exon	FALSE	canonical	0	0	junction_2	0.942809041582063	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCCAAAGTCTGTACCTTC	9792	False	NA	NA	False	AATAAA	-33	NA	95661769	95613775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr13_-_95613968_95615022_95615223_95615532_95615602_95661544
transcript_25544.nnic	chr13	+	647	3	Antisense	novelGene_ENSMUSG00000021678.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	0	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTCCTTTGGGTAAGTC	NA	False	NA	NA	False	NA	NA	NA	95660746	95666045	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr13_+_95661054_95664461_95664574_95665817
transcript_25548.known	chr13	-	2741	2	FSM	ENSMUSG00000021678.10	ENSMUST00000022185.10	2741	2	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAACAAGTT	9826	False	NA	NA	False	AATAAA	-16	NA	95661735	95648239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_95650790_95661544
transcript_25552.known	chr13	-	3336	2	FSM	ENSMUSG00000048376.7	ENSMUST00000059193.7	3336	2	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	0	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCATGCTTGGTGTCTG	NA	False	NA	NA	False	AATAAA	-3	NA	95754995	95738310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_95741446_95754794
transcript_25553.known	chr13	-	632	5	FSM	ENSMUSG00000021676.11	ENSMUST00000238261.2	632	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_2	6.44204936336256	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAAAGCCACCCTTGGACT	NA	False	NA	NA	False	AATAAA	-7	NA	96028265	95882819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_95883023_95886500_95886579_95899753_95899911_95974331_95974432_96028171
transcript_25555.known	chr13	-	5847	36	FSM	ENSMUSG00000021676.11	ENSMUST00000068603.8	5847	36	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_26	10.4750042618471	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGGTAGAGTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	96028503	95763681	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_95764629_95765454_95765564_95766496_95766635_95768531_95768693_95771971_95772185_95774225_95774314_95783269_95783412_95784685_95784789_95794310_95794444_95796625_95796859_95797506_95797592_95798094_95798236_95800570_95800796_95802100_95802265_95804875_95805026_95807736_95807946_95809492_95809563_95810192_95810265_95811821_95811906_95818660_95818832_95819417_95819561_95821361_95821530_95826208_95826300_95844385_95844550_95852564_95852690_95858020_95858182_95861053_95861218_95865970_95866059_95867787_95867967_95869398_95869513_95870391_95870460_95882945_95883023_95886500_95886579_95899753_95899911_95974331_95974432_96028171
transcript_25556.known	chr13	-	2161	1	FSM	ENSMUSG00000114133.2	ENSMUST00000220449.2	2161	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	760	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCTAGCCAGAGCAATTAG	NA	False	NA	NA	False	NA	NA	NA	96217884	96215723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_96215700_96217900
transcript_25558.nnic	chr13	+	968	2	Genic_Genomic	ENSMUSG00000100475.2	novel	967	1	NA	NA	-785	-85	multi-exon	FALSE	canonical	2	3	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTGTTGCTACCAATG	NA	False	NA	NA	False	AATAAA	-19	NA	96269091	96270758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr13_+_96269288_96269986
transcript_25559.nnic	chr13	+	717	3	Intergenic	novelGene_35	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGCTCAGGACTTCTGG	NA	False	NA	NA	False	GATAAA	-21	NA	96491062	96510928	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr13_+_96491421_96492914_96493098_96510752
transcript_25563.known	chr13	+	5183	13	FSM	ENSMUSG00000021671.10	ENSMUST00000099295.6	5183	13	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_9	14.0798812337163	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGTCTCTGTACTGGAAA	NA	False	NA	NA	False	NA	NA	NA	96524801	96554245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_96525040_96526730_96526871_96528095_96528184_96529734_96529853_96530999_96531078_96533147_96533339_96535201_96535379_96537257_96537363_96538083_96538264_96539387_96539542_96540913_96541192_96547097_96547275_96550986
transcript_25569.nnic	chr13	-	1622	5	NNC	ENSMUSG00000047117.14	novel	704	6	NA	NA	-126	-3166	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	2.04633819296811	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACTGTGGCTTAAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	96582651	96575617	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_96576595_96577282_96577375_96578064_96578164_96580786_96580886_96582296
transcript_25570.nnic	chr13	-	865	5	NNC	ENSMUSG00000047117.14	novel	704	6	NA	NA	-126	-3923	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	2.04633819296811	18	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTTACTTCTTGTAAAGT	NA	False	NA	NA	False	NA	NA	NA	96582651	96576374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_96576595_96577282_96577375_96578064_96578164_96580786_96580886_96582296
transcript_25573.known	chr13	+	1810	7	FSM	ENSMUSG00000021671.10	ENSMUST00000221039.2	1810	7	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_2	7.31247032282677	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAAATGAATAAAATAAG	NA	False	NA	NA	False	NA	NA	NA	96524867	96536224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_96525040_96526730_96526871_96528095_96528184_96529734_96529853_96530999_96531078_96533147_96533339_96535201
transcript_25577.nic	chr13	-	1527	7	ISM	ENSMUSG00000021668.16	ENSMUST00000022172.12	4225	15	-70	15573	24	8276	5prime_fragment	FALSE	canonical	3	32	junction_6	6.70198975429437	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGAAAACTTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	96679063	96632770	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_96633351_96638026_96638181_96641018_96641151_96644719_96644873_96653146_96653267_96655536_96655696_96678834
transcript_25578.known	chr13	-	4225	15	FSM	ENSMUSG00000021668.16	ENSMUST00000022172.12	4225	15	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_7	5.85191404236116	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTTATTGACTGTCATAT	NA	False	NA	NA	False	AATAAA	-20	NA	96678993	96617197	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_96618763_96618965_96619000_96619998_96620914_96623315_96623488_96625689_96625787_96627444_96627478_96630336_96630504_96631915_96632041_96633110_96633351_96638026_96638181_96641018_96641151_96644719_96644873_96653146_96653267_96655536_96655696_96678834
transcript_25579.known	chr13	+	5285	17	FSM	ENSMUSG00000021669.16	ENSMUST00000109444.3	5285	17	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_10	9.39081998549647	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGATTTGTTTTCCT	NA	False	NA	NA	False	ATTAAA	-19	NA	96679242	96776675	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_96679768_96685704_96685840_96708418_96708536_96734712_96734821_96735897_96736037_96739580_96739665_96746281_96746440_96748768_96748862_96751281_96751369_96752964_96753058_96761202_96761299_96765520_96765654_96767268_96767340_96770580_96770710_96771361_96771492_96772257_96772395_96773625
transcript_25582.known	chr13	-	4425	20	FSM	ENSMUSG00000021670.15	ENSMUST00000022176.15	4425	20	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_19	35.2932314809179	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAGTGTAAGCAGTGGCT	NA	False	NA	-5	True	AGTAAA	-22	NA	96807444	96785474	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_96787142_96787517_96787673_96788363_96788523_96788603_96788745_96789165_96789337_96791323_96791430_96792057_96792216_96792361_96792521_96793070_96793266_96795090_96795267_96795378_96795627_96795724_96795886_96796401_96796519_96796625_96796733_96799536_96799643_96801269_96801355_96802317_96802406_96802620_96802733_96803028_96803217_96807318
transcript_25585.nic	chr13	-	978	8	ISM	ENSMUSG00000021670.15	ENSMUST00000022176.15	4425	20	-89	10967	-89	215	5prime_fragment	FALSE	canonical	3	390	junction_7	33.7802019060918	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACCAAACCCCGTAACCC	NA	False	NA	NA	False	AAGAAA	-2	NA	96807533	96796441	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_96796519_96796625_96796733_96799536_96799643_96801269_96801355_96802317_96802406_96802620_96802733_96803028_96803217_96807318
transcript_25595.known	chr13	+	3089	21	FSM	ENSMUSG00000021666.17	ENSMUST00000022170.8	3089	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	52.3769033067057	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCCTAACAAATCTTAATT	NA	False	NA	NA	False	AATAAA	-25	NA	97274547	97312959	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_97274568_97278434_97278519_97279515_97279601_97282160_97282213_97282727_97282826_97285816_97285943_97286832_97286922_97289735_97289825_97291697_97291759_97291928_97292109_97296594_97296676_97297526_97297676_97299359_97299501_97299582_97299683_97301518_97301706_97304773_97304851_97307993_97308133_97309019_97309200_97309447_97309564_97311369_97311553_97312107
transcript_25600.known	chr13	+	1829	16	FSM	ENSMUSG00000021666.17	ENSMUST00000161913.8	1829	16	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_1	32.7972898609355	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTACATCTCACATATACA	NA	False	NA	NA	False	AATAAA	-19	NA	97274492	97304999	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_97274568_97278434_97278519_97279515_97279601_97282154_97282213_97282727_97282826_97285816_97285943_97286832_97286922_97289735_97289825_97291697_97291759_97291928_97292109_97296594_97296676_97297526_97297676_97299359_97299501_97299582_97299683_97301518_97301706_97304773
transcript_25601.known	chr13	-	1905	14	FSM	ENSMUSG00000021665.10	ENSMUST00000022169.10	1905	14	0	0	0	0	multi-exon	FALSE	canonical	3	2035	junction_5	137.076923076923	1558	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGCTGCCCTGTGTGGAT	NA	False	NA	1	True	AATAAA	-27	NA	97334865	97312838	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
transcript_25607.known	chr13	+	4547	13	FSM	ENSMUSG00000041817.15	ENSMUST00000042517.8	4547	13	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_9	17.0739811799514	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTCAGTCTTCTCTGTGT	8717	False	NA	14	True	AATAAA	-20	NA	97208150	97266023	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_97208220_97228325_97228461_97230098_97230199_97230569_97230656_97234047_97234220_97243461_97243642_97246530_97246660_97247803_97247911_97250146_97250187_97250616_97250768_97254882_97255040_97259199_97259401_97263003
transcript_2562.known	chr1	+	558	4	FSM	ENSMUSG00000046330.11	ENSMUST00000059980.11	558	4	0	0	0	0	multi-exon	FALSE	canonical	2	9164	junction_1	3956.18005993998	273204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTACATAGCTTGGTTT	NA	False	NA	19	True	AATAAA	-17	NA	72750448	72752972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_72750483_72750830_72750960_72751300_72751384_72752660
transcript_25622.known	chr13	-	1030	1	FSM	ENSMUSG00000057762.7	ENSMUST00000071118.7	1030	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2909	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTAACGGCCGGGCATGGT	NA	False	NA	NA	False	NA	NA	NA	97235745	97234715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_97234700_97235700
transcript_25623.known	chr13	-	2700	6	FSM	ENSMUSG00000060739.9	ENSMUST00000073456.9	2700	6	0	0	0	0	multi-exon	FALSE	canonical	3	555	junction_1	171.768914533451	6095	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTGTGGTCTAACAGT	NA	False	NA	NA	False	AATAAA	-14	NA	97274445	97265931	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_97267737_97268350_97268544_97270046_97270227_97271801_97271953_97272028_97272217_97274262
transcript_25624.known	chr13	-	974	6	FSM	ENSMUSG00000060739.9	ENSMUST00000225410.2	974	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	355.64420422664	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGGGGCATAACGGTTTA	NA	False	NA	NA	False	AATAAA	-28	NA	97274360	97267491	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_97267737_97268350_97268463_97270046_97270227_97271801_97271953_97272028_97272217_97274262
transcript_25625.known	chr13	+	4737	3	FSM	ENSMUSG00000041773.9	ENSMUST00000041623.9	4737	3	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	2	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCATTGTATTGTGAGTT	NA	False	NA	22	True	AATAAA	-16	NA	97377612	97389542	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_97378038_97381478_97383293_97387044
transcript_25626.known	chr13	+	658	2	FSM	ENSMUSG00000097932.3	ENSMUST00000181148.3	658	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCAGAACTTAACAGTCCA	NA	False	NA	NA	False	NA	NA	NA	97419690	97422068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_97419797_97421516
transcript_2563.known	chr1	+	665	3	FSM	ENSMUSG00000046330.11	ENSMUST00000212432.2	665	3	0	0	0	0	multi-exon	FALSE	canonical	2	15690	junction_1	1470.5	4377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAAACGGGTTATTTACG	NA	False	NA	-23	True	NA	NA	NA	72750472	72752755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_72750960_72751300_72751384_72752660
transcript_2564.known	chr1	+	400	4	FSM	ENSMUSG00000046330.11	ENSMUST00000212335.2	400	4	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_2	7389.73726792021	2206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTTTTTTTTTTTGCCTT	NA	False	NA	-2	True	AATAAA	-15	NA	72750916	72752776	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_72750960_72751300_72751384_72752340_72752499_72752660
transcript_25646.nnic	chr13	+	2851	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_3	70.6745278646337	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCGAACTCAAGACCTC	NA	False	NA	21	True	AATAAA	-18	NA	97619201	97633515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_97619286_97619456_97619541_97629663_97629744_97630912
transcript_25648.nnic	chr13	+	1175	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	-7	-2171	at_least_one_novel_splicesite	FALSE	canonical	3	166	junction_3	11.8602979164381	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCTCATAGTATTTTCTC	NA	False	NA	NA	False	TATAAA	-2	NA	97619201	97631344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_97619286_97619456_97619541_97629663_97630239_97630912
transcript_25649.nnic	chr13	+	2417	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	-7	-929	at_least_one_novel_splicesite	FALSE	canonical	3	166	junction_3	11.8602979164381	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTCTGTGTAGCTGG	NA	False	NA	22	True	AAAAAG	-26	NA	97619201	97632586	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_97619286_97619456_97619541_97629663_97630239_97630912
transcript_2565.known	chr1	+	449	2	FSM	ENSMUSG00000046330.11	ENSMUST00000211963.2	449	2	0	0	0	0	multi-exon	FALSE	canonical	2	15690	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAAGTTCAGACTTTGAT	NA	False	NA	NA	False	NA	NA	NA	72750939	72751729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_72750960_72751300
transcript_25651.nnic	chr13	+	3346	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	3	166	junction_3	11.8602979164381	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCGAACTCAAGACCTC	NA	False	NA	21	True	AATAAA	-18	NA	97619201	97633515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_97619286_97619456_97619541_97629663_97630239_97630912
transcript_25658.nnic	chr13	+	437	3	Intergenic	novelGene_37	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAGAATGAGTCACATGC	NA	False	NA	NA	False	NA	NA	NA	97618016	97619124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr13_+_97618132_97618599_97618764_97618966
transcript_25659.nnic	chr13	+	839	3	Intergenic	novelGene_36	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTGGCTTCTTTTGAACCA	NA	False	NA	NA	False	NA	NA	NA	97617556	97619146	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr13_+_97618132_97618599_97618764_97619046
transcript_25663.known	chr13	+	2764	3	FSM	ENSMUSG00000078952.10	ENSMUST00000179324.2	2764	3	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	70.5	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCGAACTCAAGACCTC	NA	False	NA	21	True	AATAAA	-18	NA	97619208	97633515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_97619286_97619456_97619541_97630912
transcript_25675.known	chr13	+	492	3	FSM	ENSMUSG00000078952.10	ENSMUST00000180371.2	492	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	9.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCAGACTCTAACCGGCAT	NA	False	NA	NA	False	NA	NA	NA	97619462	97626208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_97619541_97625686_97625857_97625964
transcript_25676.known	chr13	-	561	1	FSM	ENSMUSG00000069117.5	ENSMUST00000074072.5	561	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	57344	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACCAATCAGATTCGAGA	NA	False	NA	NA	False	AATAAA	-33	NA	97897140	97896579	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_97896600_97897100
transcript_25680.nnic	chr13	-	1313	3	NNC	ENSMUSG00000114348.2	novel	653	3	NA	NA	5357	-12431	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1.5	14	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTATGGAGCTTGATAGCT	NA	False	NA	NA	False	TTTAAA	-4	NA	97957036	97945100	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_97945979_97949820_97950033_97956813
transcript_25682.known	chr13	-	4120	13	FSM	ENSMUSG00000041747.4	ENSMUST00000040972.4	4120	13	0	0	0	0	multi-exon	FALSE	canonical	3	368	junction_4	38.6584042896525	160	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTCCCTTGATCATGA	NA	False	NA	-53	True	AATGAA	-15	NA	98399549	98383352	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_98385885_98387079_98387139_98387292_98387427_98388436_98388539_98389252_98389403_98390151_98390237_98391426_98391563_98393608_98393735_98394343_98394523_98395612_98395798_98395881_98395975_98397306_98397479_98399382
transcript_25690.known	chr13	+	1755	9	FSM	ENSMUSG00000021661.17	ENSMUST00000022164.16	1755	9	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	23.3559414282533	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGATTATATGCTTGTC	NA	False	NA	14	True	AATAAA	-24	NA	98399749	98410426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_98399985_98402658_98403041_98403823_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279_98409361_98409885
transcript_25692.known	chr13	+	2328	8	FSM	ENSMUSG00000021661.17	ENSMUST00000123924.8	2328	8	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	24.7839645327212	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGATTATATGCTTGTC	NA	False	NA	14	True	AATAAA	-24	NA	98399701	98410426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_98399985_98402658_98403041_98403823_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279
transcript_25693.known	chr13	+	1476	8	FSM	ENSMUSG00000021661.17	ENSMUST00000226100.2	1476	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	57.4651624722247	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGATTATATGCTTGTC	NA	False	NA	14	True	AATAAA	-24	NA	98399646	98410426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_98399985_98403823_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279_98409361_98409885
transcript_25694.known	chr13	+	1949	7	FSM	ENSMUSG00000021661.17	ENSMUST00000091356.11	1949	7	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	62.0510542483634	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGATTATATGCTTGTC	NA	False	NA	14	True	AATAAA	-24	NA	98399698	98410426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_98399985_98403823_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279
transcript_25695.known	chr13	+	1887	2	FSM	ENSMUSG00000021661.17	ENSMUST00000223606.2	1887	2	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	0	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAAGTGAGTTACTGT	NA	False	NA	NA	False	ATTAAA	-18	NA	98399664	98404225	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_98399985_98402658
transcript_25696.known	chr13	+	2217	9	FSM	ENSMUSG00000021661.17	ENSMUST00000150352.3	2217	9	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_8	65.6047587831858	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACTCTTTGTAAAGTATAT	NA	False	NA	NA	False	NA	NA	NA	98399581	98411262	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_98399985_98402658_98403041_98403823_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279_98409361_98410427
transcript_25710.known	chr13	-	1091	6	FSM	ENSMUSG00000021660.15	ENSMUST00000022163.15	1091	6	0	0	0	0	multi-exon	FALSE	canonical	3	579	junction_5	2432.68485422999	5036	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTTTATCATTTTACTTA	NA	False	NA	-16	True	AATAAA	-37	NA	98453475	98446403	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452737_98452807_98453132
transcript_25717.known	chr13	-	888	6	FSM	ENSMUSG00000021660.15	ENSMUST00000152704.8	888	6	0	0	0	0	multi-exon	FALSE	canonical	3	5972	junction_2	361.40138350593	92583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTATCATTTTACTT	NA	False	NA	-17	True	AATAAA	-36	NA	98453514	98446404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452737_98452807_98453373
transcript_25718.known	chr13	-	839	2	FSM	ENSMUSG00000021660.15	ENSMUST00000133461.2	839	2	0	0	0	0	multi-exon	FALSE	canonical	3	7051	junction_1	0	1419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGGTTTATCATTTTACT	NA	False	NA	-18	True	AATAAA	-35	NA	98448023	98446405	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_98446710_98447488
transcript_25719.known	chr13	-	780	5	FSM	ENSMUSG00000021660.15	ENSMUST00000134542.2	780	5	0	0	0	0	multi-exon	FALSE	canonical	3	5972	junction_2	394.186821190156	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGGAATAAAGTTTGGAAAG	NA	False	NA	-62	True	AATAAA	-13	NA	98452884	98446449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452737
transcript_2572.nnic	chr1	+	993	4	NNC	ENSMUSG00000039323.19	novel	906	3	NA	NA	-754	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	1672.39096970641	3681	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTCTTACTTGAGTC	536	False	NA	18	True	AATAAA	-3	NA	72862907	72891633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_72863056_72888244_72888472_72888722_72888864_72891156
transcript_25720.known	chr13	-	569	4	FSM	ENSMUSG00000021660.15	ENSMUST00000133826.2	569	4	0	0	0	0	multi-exon	FALSE	canonical	3	6398	junction_3	146.166571645731	929	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCTCAGGTTCAGAATTG	NA	False	NA	NA	False	NA	NA	NA	98453504	98449546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_98449802_98450146_98450261_98452737_98452807_98453373
transcript_25721.nnic	chr13	-	646	3	NNC	ENSMUSG00000114521.2	novel	809	3	NA	NA	76	79	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.5	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCCAATGGGCTCTGATTT	252	False	NA	NA	False	AATAAA	-19	NA	98754094	98744839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_98745225_98746803_98746937_98753966
transcript_25723.known	chr13	-	1161	4	FSM	ENSMUSG00000052485.8	ENSMUST00000064347.8	1161	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.816496580927726	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTTCCCATTTTTCTG	9052	False	NA	NA	False	AATAAA	-16	NA	98831342	98822742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_98823025_98824855_98824992_98828511_98829226_98831313
transcript_25727.nnic	chr13	-	1643	3	NNC	ENSMUSG00000114689.2	novel	570	2	NA	NA	-1186	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	22.5	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCCTCCATCTTTGAACA	NA	False	NA	-6	True	ATTAAA	-23	NA	98854204	98849581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_98850076_98852942_98853093_98853205
transcript_25730.nnic	chr13	-	738	3	NNC	ENSMUSG00000114689.2	novel	570	2	NA	NA	-1197	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_2	24.5	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCCTCCATCTTTGAACA	NA	False	NA	-6	True	ATTAAA	-23	NA	98854215	98849581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_98850076_98852942_98853093_98854121
transcript_25731.known	chr13	-	570	2	FSM	ENSMUSG00000114689.2	ENSMUST00000224536.2	570	2	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCCTCCATCTTTGAACA	NA	False	NA	-6	True	ATTAAA	-23	NA	98853018	98849581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_98850076_98852942
transcript_25732.known	chr13	-	5122	26	FSM	ENSMUSG00000041685.17	ENSMUST00000040340.16	5122	26	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_14	64.1266746370027	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGACTTTGTGCCTTTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	98951957	98859910	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_98862285_98862568_98862734_98866696_98866762_98867284_98867485_98868584_98868718_98869025_98869182_98871526_98871639_98879918_98880049_98882308_98882413_98884723_98884813_98886359_98886403_98888414_98888440_98888841_98888854_98891587_98891764_98892075_98892134_98899339_98899365_98900197_98900271_98901012_98901058_98912328_98912426_98913896_98913996_98921283_98921389_98925870_98926024_98926239_98926382_98932800_98932876_98942813_98942906_98951583
transcript_25734.nnic	chr13	-	1564	16	NNC	ENSMUSG00000041685.17	novel	1586	15	NA	NA	-44	411	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	103.613169476128	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGTCTTCATTAATATTTT	NA	False	NA	NA	False	NA	NA	NA	98951760	98887331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_98887521_98888393_98888440_98888841_98888854_98891587_98891762_98892073_98892134_98899339_98899365_98900197_98900271_98901012_98901058_98912328_98912426_98913896_98913996_98921283_98921389_98925870_98926024_98926239_98926382_98932800_98932876_98942813_98942906_98951583
transcript_25737.nic	chr13	-	3035	14	NIC	ENSMUSG00000041685.17	novel	1523	14	NA	NA	-44	1	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_2	107.963559488907	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGTCTTTCTCTTTCTTT	NA	False	NA	NA	False	ATTAAA	-13	NA	98951760	98888887	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_98890606_98891587_98891762_98892073_98892134_98899339_98899365_98900197_98900271_98901012_98901058_98912328_98912426_98913896_98913996_98921283_98921389_98925870_98926024_98926239_98926382_98932800_98932876_98942813_98942906_98951583
transcript_25738.nic	chr13	-	1403	14	NIC	ENSMUSG00000041685.17	novel	1927	15	NA	NA	-44	121	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_2	84.7171416116021	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTTTCATTTAGATTAT	NA	False	NA	NA	False	AATAAA	-18	NA	98951760	98888767	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_98888854_98891587_98891762_98892073_98892134_98899339_98899365_98900197_98900271_98901012_98901058_98912328_98912426_98913896_98913996_98921283_98921389_98925870_98926024_98926239_98926382_98932800_98932876_98942813_98942906_98951583
transcript_25748.known	chr13	-	1927	15	FSM	ENSMUSG00000041685.17	ENSMUST00000225094.2	1927	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	81.8157462016366	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATTAG	NA	False	NA	NA	False	NA	NA	NA	98951661	98887742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_98888440_98888841_98888854_98891587_98891764_98892075_98892134_98899339_98899365_98900197_98900271_98901012_98901058_98912328_98912426_98913896_98913996_98921283_98921389_98925870_98926024_98926239_98926382_98932800_98932876_98942813_98942906_98951583
transcript_25749.known	chr13	-	2964	14	FSM	ENSMUSG00000041685.17	ENSMUST00000224992.2	2964	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	107.963559488907	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTGTCTTTCTCTTTCTT	NA	False	NA	NA	False	ATTAAA	-12	NA	98951690	98888888	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_98890606_98891587_98891764_98892075_98892134_98899339_98899365_98900197_98900271_98901012_98901058_98912328_98912426_98913896_98913996_98921283_98921389_98925870_98926024_98926239_98926382_98932800_98932876_98942813_98942906_98951583
transcript_25750.known	chr13	+	400	2	FSM	ENSMUSG00000114719.2	ENSMUST00000225468.2	400	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTAATAAACCTGAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	98953259	98953773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_98953482_98953595
transcript_25751.known	chr13	-	8445	24	FSM	ENSMUSG00000009470.18	ENSMUST00000109399.9	8445	24	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_23	103.521017838	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTGCACTCTTGATTTT	NA	False	NA	-7	True	AATAAA	-15	NA	99027548	98975526	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_98981129_98982928_98983072_98983835_98983911_98985662_98985763_98986615_98986692_98989362_98989459_98989907_98990007_98991650_98991739_98991819_98992087_98993396_98993484_98994893_98995066_98996270_98996497_98997148_98997302_99000215_99000385_99000935_99000997_99001476_99001596_99003553_99003677_99006747_99006830_99012111_99012246_99015127_99015235_99021022_99021173_99024973_99025050_99027184_99027299_99027422
transcript_25752.known	chr13	-	8453	24	FSM	ENSMUSG00000009470.18	ENSMUST00000109401.8	8453	24	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_23	63.8650810868555	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTGCACTCTTGATTTT	NA	False	NA	-7	True	AATAAA	-15	NA	99062892	98975526	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_98981129_98982928_98983072_98983835_98983911_98985662_98985763_98986615_98986692_98989362_98989459_98989907_98990007_98991650_98991739_98991819_98992087_98993396_98993484_98994893_98995066_98996270_98996497_98997148_98997302_99000215_99000385_99000935_99000997_99001476_99001596_99003553_99003677_99006747_99006830_99012111_99012246_99015127_99015235_99021022_99021173_99024973_99025050_99027184_99027299_99062758
transcript_25758.known	chr13	+	447	1	FSM	ENSMUSG00000062461.8	ENSMUST00000080866.8	447	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	612	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCACACCGGAGGTTAAT	NA	False	NA	NA	False	NA	NA	NA	99040731	99041178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_99040700_99041200
transcript_25759.nnic	chr13	+	1128	3	NNC	ENSMUSG00000114203.2	novel	960	2	NA	NA	-16530	67	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAAGGCTGTCAGTCCCTG	NA	False	NA	NA	False	AATAAA	-22	NA	99114128	99133993	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_99114293_99132947_99133008_99133089
transcript_25763.known	chr13	+	408	3	FSM	ENSMUSG00000097848.3	ENSMUST00000224929.2	408	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGGATCCCAGGTGAGGG	6995	False	NA	NA	False	NA	NA	NA	99237268	99242680	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_99237334_99239172_99239321_99242485
transcript_25765.known	chr13	+	1723	2	FSM	ENSMUSG00000097848.3	ENSMUST00000181742.2	1723	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGACGACTGGTCTTTAGC	6940	False	NA	NA	False	NA	NA	NA	99237213	99244088	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_99237334_99242485
transcript_25771.known	chr13	-	1704	10	FSM	ENSMUSG00000021650.8	ENSMUST00000022153.8	1704	10	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_5	28.5894740191448	851	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGGGTTGTGTTTCTTTTC	NA	False	NA	-11	True	AATAAA	-16	NA	99481213	99456154	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_99456902_99458068_99458183_99463145_99463221_99466459_99466574_99468943_99469036_99469395_99469475_99473170_99473289_99476408_99476539_99479820_99479914_99481071
transcript_25779.known	chr13	+	1849	11	FSM	ENSMUSG00000041632.8	ENSMUST00000052249.7	1849	11	0	0	0	0	multi-exon	FALSE	canonical	3	414	junction_10	37.2860563750043	1460	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGTGTGGTGTGATTT	NA	False	NA	20	True	AATAAA	-15	NA	99481293	99552070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_99481384_99484839_99484918_99499472_99499544_99501732_99501792_99536769_99536885_99540011_99540091_99541495_99541612_99546316_99546420_99547785_99547929_99548702_99548874_99551246
transcript_25789.nic	chr13	-	2380	5	ISM	ENSMUSG00000052727.7	ENSMUST00000064762.6	11808	7	-263	12702	-263	153	5prime_fragment	FALSE	canonical	3	33	junction_3	7.32717544487642	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAGAGAAAGGAGCTGAA	NA	False	NA	-129	True	AAGAAA	-41	NA	99653311	99570655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_99572210_99578141_99578283_99580721_99580805_99644615_99644718_99652811
transcript_2579.known	chr1	+	1307	4	FSM	ENSMUSG00000039323.19	ENSMUST00000047328.11	1307	4	0	0	0	0	multi-exon	FALSE	canonical	3	3391	junction_2	148.912353043288	7322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTCTTACTTGAGTC	1290	False	NA	18	True	AATAAA	-3	NA	72863661	72891633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_72864124_72888244_72888472_72888722_72888864_72891156
transcript_25793.known	chr13	-	2150	3	FSM	ENSMUSG00000052727.7	ENSMUST00000224702.2	2150	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	1.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAGCGAAGAAAGAAGAGTC	4690	False	NA	72	True	NA	NA	NA	99580975	99570454	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_99572210_99578141_99578283_99580721
transcript_25795.nnic	chr13	-	1643	3	NNC	ENSMUSG00000052727.7	novel	2669	3	NA	NA	-105	-753	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	24	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTTCTCATTGCCAAGA	4585	False	NA	NA	False	AATAAA	-19	NA	99581080	99576894	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_99578038_99578141_99578283_99580721
transcript_25796.known	chr13	-	1364	2	FSM	ENSMUSG00000052727.7	ENSMUST00000223820.2	1364	2	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AATAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	99653026	99643568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_99644718_99652811
transcript_25797.known	chr13	-	11808	7	FSM	ENSMUSG00000052727.7	ENSMUST00000064762.6	11808	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_5	21.4741446602394	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTTCCTTGTCATTTG	NA	False	NA	0	True	AATAAA	-40	NA	99653048	99557953	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_99562470_99563726_99563966_99565719_99572210_99578141_99578283_99580721_99580805_99644615_99644718_99652811
transcript_25798.nnic	chr13	+	1668	3	NNC	ENSMUSG00000097027.3	novel	2481	2	NA	NA	-23	4280	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTCTCTCTCTTCC	NA	False	NA	NA	False	NA	NA	NA	99653113	99662548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_99653367_99656017_99656993_99662108
transcript_25799.nnic	chr13	+	583	2	NNC	ENSMUSG00000097027.3	novel	2481	2	NA	NA	3	4196	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	0	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGTTTTTATTTGCCCCC	NA	False	NA	NA	False	TATAAA	-7	NA	99653139	99662464	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_99653367_99662108
transcript_2580.known	chr1	+	991	4	FSM	ENSMUSG00000039323.19	ENSMUST00000120564.2	991	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	1673.33041168404	3581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAAGTGTGTGTCTTAC	573	False	NA	11	True	ATTAAA	-11	NA	72864480	72891626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_72864634_72888244_72888472_72888722_72888864_72891156
transcript_25801.known	chr13	+	2481	2	FSM	ENSMUSG00000097027.3	ENSMUST00000181939.3	2481	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAGAATAAGTAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	99653136	99658268	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_99653367_99656017
transcript_25806.nic	chr13	-	404	2	ISM	ENSMUSG00000021646.10	ENSMUST00000221846.2	472	3	-29	7307	-8	-7307	5prime_fragment	FALSE	canonical	2	4	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTATTATTATTATTGGT	661	False	NA	NA	False	NA	NA	NA	100152155	100146106	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_100146249_100151893
transcript_25807.known	chr13	-	2123	17	FSM	ENSMUSG00000021646.10	ENSMUST00000022148.7	2123	17	0	0	0	0	multi-exon	FALSE	canonical	2	186	junction_5	41.3428878405948	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTCTAGGGTTGTTGAGA	669	False	NA	-6	True	AATAAA	-15	NA	100152147	100085040	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_100085465_100088663_100088750_100090643_100090759_100091122_100091280_100095312_100095380_100097407_100097485_100100315_100100389_100104148_100104245_100104341_100104442_100108286_100108352_100112916_100113031_100125043_100125157_100126755_100126884_100127719_100127822_100130074_100130160_100136757_100136825_100151893
transcript_25809.known	chr13	-	9921	39	FSM	ENSMUSG00000049658.14	ENSMUST00000038104.12	9921	39	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_24	12.2627061132051	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTTTGTCCTTTTCAAA	6759	False	NA	0	True	AATAAA	-18	NA	100240578	100154501	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_100156919_100160107_100160364_100161904_100162164_100163942_100163980_100167292_100167498_100171591_100171779_100172286_100172348_100174267_100174446_100174629_100174781_100177929_100178091_100178567_100178794_100180266_100180360_100180779_100180817_100183233_100183348_100186143_100186538_100187452_100187638_100187855_100188064_100189480_100189627_100191603_100191812_100192666_100192849_100195233_100195454_100195996_100196179_100196801_100198015_100200866_100200998_100202384_100202575_100203972_100204065_100206584_100206745_100210894_100211054_100212012_100212152_100214339_100214622_100215166_100215308_100220648_100220704_100225860_100225956_100228701_100228836_100229921_100230054_100234045_100234106_100234993_100235104_100235460_100235738_100240134
transcript_2581.known	chr1	-	437	2	FSM	ENSMUSG00000026182.7	ENSMUST00000027374.7	437	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTTTGATTTTATTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	73055068	73054232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_73054485_73054883
transcript_25811.known	chr13	+	601	3	FSM	ENSMUSG00000021643.16	ENSMUST00000022145.15	601	3	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	3	560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTGAATATTATTTTTAT	NA	False	NA	NA	False	AATAAA	-25	NA	100244519	100250746	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_100244738_100245530_100245640_100250472
transcript_25812.known	chr13	+	516	3	FSM	ENSMUSG00000021643.16	ENSMUST00000132053.8	516	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	34.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAGACCACAGTGGAGTC	NA	False	NA	NA	False	AATAAA	-18	NA	100244592	100247517	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_100244738_100245530_100245640_100247255
transcript_25813.known	chr13	+	570	3	FSM	ENSMUSG00000021643.16	ENSMUST00000151821.8	570	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	37.5	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTGAATATTATTTTTAT	NA	False	NA	NA	False	AATAAA	-25	NA	100244848	100250746	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_100245036_100245530_100245640_100250472
transcript_2582.known	chr1	-	1125	2	FSM	ENSMUSG00000048480.6	ENSMUST00000053389.5	1125	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATCGCTTGCCCTCAAAG	2876	False	NA	NA	False	ATTAAA	-21	NA	74233790	74230943	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_74232029_74233750
transcript_25820.known	chr13	+	1222	9	FSM	ENSMUSG00000021645.17	ENSMUST00000022147.15	1222	9	0	0	0	0	multi-exon	TRUE	canonical	3	544	junction_6	97.8154352594722	5721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCTTGACTTTATAGATA	NA	False	NA	17	True	AATAAA	-13	NA	100261359	100274198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_100261474_100263094_100263167_100263377_100263498_100264312_100264514_100264722_100264870_100267587_100267684_100268863_100268975_100272196_100272248_100273888
transcript_25829.known	chr13	+	453	3	FSM	ENSMUSG00000021645.17	ENSMUST00000134514.8	453	3	0	0	0	0	multi-exon	FALSE	canonical	3	803	junction_2	5	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCTCTCTGCATTCTGAG	NA	False	NA	NA	False	ATTAAA	-4	NA	100261365	100263650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_100261474_100263094_100263167_100263377
transcript_25830.known	chr13	+	378	1	FSM	ENSMUSG00000051723.8	ENSMUST00000060994.6	378	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	195	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGCTCATGTCAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	100552072	100552450	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_100552100_100552400
transcript_25834.nic	chr13	-	1595	16	ISM	ENSMUSG00000021639.18	ENSMUST00000145266.8	1630	18	-62	8476	-26	114	5prime_fragment	FALSE	canonical	3	30	junction_15	76.4776219992925	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTGTTATTTTGAGCCA	NA	False	NA	-10	True	ATTAAA	-16	NA	100628908	100605201	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628750
transcript_25836.nic	chr13	-	1481	16	ISM	ENSMUSG00000021639.18	ENSMUST00000145266.8	1630	18	-62	8590	-26	0	5prime_fragment	FALSE	canonical	3	30	junction_15	76.4776219992925	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACATGAAAGCACTTTGA	NA	False	NA	-19	True	AATAAA	-32	NA	100628908	100605315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628750
transcript_25843.known	chr13	-	1656	16	FSM	ENSMUSG00000021639.18	ENSMUST00000066984.14	1656	16	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_10	29.724213848122	770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCAGTTTTTTTTCATTTT	NA	False	NA	NA	False	ATTAAA	-13	NA	100629069	100605087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628964
transcript_25844.known	chr13	-	1796	15	FSM	ENSMUSG00000021639.18	ENSMUST00000142182.8	1796	15	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_14	76.8397484299338	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACATGAAAGCACTTTGA	NA	False	NA	-19	True	AATAAA	-32	NA	100628875	100605315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628750
transcript_25845.known	chr13	-	450	5	FSM	ENSMUSG00000021639.18	ENSMUST00000152049.2	450	5	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_1	6.75925291729789	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATATATATTATATAAC	NA	False	NA	NA	False	NA	NA	NA	100629061	100625294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628964
transcript_25846.known	chr13	-	2443	9	FSM	ENSMUSG00000021638.13	ENSMUST00000160859.8	2443	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	25.6706909723911	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCACCACTGTTTTTCTTA	NA	False	NA	NA	False	NA	NA	NA	100688989	100634621	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_100635424_100639443_100639486_100642658_100642831_100647919_100648136_100651534_100651684_100671470_100671633_100675768_100676442_100677575_100677693_100688879
transcript_25848.known	chr13	-	2839	9	FSM	ENSMUSG00000021638.13	ENSMUST00000022140.12	2839	9	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_8	20.6272726020674	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCTCATTTGATGTCATT	NA	False	NA	NA	False	ATTAAA	-22	NA	100689226	100634270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_100635424_100639443_100639486_100642658_100642831_100647919_100648136_100651534_100651684_100671470_100671633_100675768_100676442_100677575_100677693_100689071
transcript_25851.known	chr13	-	3061	7	FSM	ENSMUSG00000021636.16	ENSMUST00000022137.14	3061	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	4.71404520791032	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTGCTCCTTATT	NA	False	NA	-1	True	ATTAAA	-18	NA	100753479	100732464	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_100733920_100734309_100734361_100736968_100737141_100737396_100737546_100744284_100744321_100747940_100749093_100753433
transcript_25856.known	chr13	-	2839	17	FSM	ENSMUSG00000021635.15	ENSMUST00000022136.14	2839	17	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_16	42.8397723354128	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTTCTTCTTATCCTTT	NA	False	NA	-6	True	ATTAAA	-15	NA	100787559	100753671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_100754441_100755601_100755660_100759305_100759427_100760927_100761075_100764017_100764165_100764267_100764354_100765907_100766091_100767563_100767676_100769389_100769460_100769703_100769830_100769958_100770012_100770370_100770508_100773449_100773607_100780027_100780112_100781498_100781754_100786185_100786290_100787329
transcript_25873.known	chr13	+	1230	3	FSM	ENSMUSG00000052293.15	ENSMUST00000167256.8	1230	3	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_1	554	818	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTTGGTACTTTGGCAGT	NA	False	NA	NA	False	AATAAA	-20	NA	100788114	100792567	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_100788226_100790698_100790792_100791541
transcript_25875.known	chr13	+	778	3	FSM	ENSMUSG00000052293.15	ENSMUST00000185767.7	778	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	620	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCAAGTACTCCCACCCT	NA	False	NA	NA	False	NA	NA	NA	100788091	100792023	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_100788295_100790698_100790792_100791541
transcript_25877.known	chr13	+	824	3	FSM	ENSMUSG00000052293.15	ENSMUST00000187792.2	824	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	631	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGTTTCAACTAAAGTAGG	NA	False	NA	NA	False	NA	NA	NA	100788132	100792068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_100788337_100790698_100790792_100791541
transcript_25879.known	chr13	-	2392	17	FSM	ENSMUSG00000021635.15	ENSMUST00000177848.3	2392	17	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_16	17.1335516968899	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTCAGTGCTTAGTATTTA	NA	False	NA	NA	False	AGTAAA	-13	NA	100787555	100753986	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_100754441_100755601_100755660_100759305_100759427_100760927_100761075_100764017_100764165_100764267_100764354_100765907_100766091_100767563_100767676_100769389_100769460_100769703_100769830_100769958_100770012_100770370_100770508_100773449_100773607_100780027_100780112_100781498_100781754_100786185_100786290_100787457
transcript_25880.known	chr13	+	1184	3	FSM	ENSMUSG00000078941.10	ENSMUST00000190729.2	1184	3	0	0	0	0	multi-exon	FALSE	canonical	3	1279	junction_2	251.5	2691	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTTGGTACTTTGGCAG	NA	False	NA	NA	False	AATAAA	-19	NA	100787887	100792566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_100787954_100790698_100790792_100791541
transcript_25881.known	chr13	+	2413	12	FSM	ENSMUSG00000048924.15	ENSMUST00000057325.15	2413	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	5.01073228346206	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAGTTTCAATGTCTCTT	NA	False	NA	5	True	TATAAA	-18	NA	100806280	100833748	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_100806360_100814411_100814711_100815824_100815884_100818288_100818376_100819274_100819353_100820793_100820880_100823616_100823700_100826826_100826928_100828802_100828911_100830044_100830217_100830877_100831009_100832618
transcript_25886.known	chr13	-	1988	12	FSM	ENSMUSG00000069089.9	ENSMUST00000091299.8	1988	12	0	0	0	0	multi-exon	FALSE	canonical	3	644	junction_3	44.8636133370117	2576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTTGTTTATGGACTATT	NA	False	NA	NA	False	CATAAA	-17	NA	100867447	100839138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100853128_100854079_100854191_100855809_100855879_100857093_100857162_100859187_100859222_100866965_100867026_100867281
transcript_25887.known	chr13	-	1159	11	FSM	ENSMUSG00000069089.9	ENSMUST00000225990.2	1159	11	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_6	227.413741889095	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTGATTTATGATTAGAG	NA	False	NA	-29	True	AATAAA	-3	NA	100867408	100839817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100853128_100855809_100855879_100857093_100857162_100859187_100859222_100866965_100867026_100867281
transcript_25894.known	chr13	-	469	5	FSM	ENSMUSG00000061474.12	ENSMUST00000076037.9	469	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	598.6340179943	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGTGAGCAGAATGAAGT	NA	False	NA	NA	False	AATAAA	-3	NA	100881096	100872659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_100872782_100875521_100875710_100877675_100877740_100880296_100880333_100881037
transcript_25903.known	chr13	-	482	4	FSM	ENSMUSG00000061474.12	ENSMUST00000132955.8	482	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	571.611950734257	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTCCAGGTGGTCACTT	NA	False	NA	NA	False	AATAAA	-26	NA	100880639	100872636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_100872782_100875521_100875704_100877675_100877740_100880548
transcript_25914.known	chr13	-	571	4	FSM	ENSMUSG00000061474.12	ENSMUST00000078573.5	571	4	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_2	492.52884856287	1395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCACAAGCTGCCCTGTAC	NA	False	NA	NA	False	NA	NA	NA	100881165	100872584	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_100872782_100875521_100875704_100877675_100877740_100881037
transcript_25915.known	chr13	-	672	4	FSM	ENSMUSG00000061474.12	ENSMUST00000125206.2	672	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	565.986061862147	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCATATATTAAACAACCTT	NA	False	NA	NA	False	AATAAA	-26	NA	100880622	100872687	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_100872782_100875521_100875710_100877675_100877740_100880296
transcript_25917.known	chr13	-	1251	9	FSM	ENSMUSG00000045273.9	ENSMUST00000075550.4	1251	9	0	0	0	0	multi-exon	TRUE	canonical	3	285	junction_6	26.2865816530031	2521	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCAGGACTGGAGAGATG	NA	False	NA	1	True	AATAAA	-41	NA	100912407	100896181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_100896703_100898268_100898433_100900057_100900110_100900676_100900741_100903332_100903390_100907702_100907778_100908162_100908212_100909233_100909290_100912194
transcript_25927.known	chr13	-	2489	9	FSM	ENSMUSG00000041431.17	ENSMUST00000072119.15	2489	9	0	0	0	0	multi-exon	FALSE	canonical	3	2476	junction_6	457.563588477055	3915	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAGGTCGGCCAACTCCC	NA	False	NA	76	True	AATAAA	-19	NA	100923078	100915157	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100920156_100921964_100922127_100922240_100922412_100922889
transcript_25928.known	chr13	-	2140	8	FSM	ENSMUSG00000041431.17	ENSMUST00000091295.14	2140	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_5	1285.22781272903	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATTTGCCCTTTTGACTG	NA	False	NA	-6	True	AATAAA	-28	NA	100922994	100915239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100921964_100922127_100922240_100922412_100922889
transcript_25929.known	chr13	-	3179	16	FSM	ENSMUSG00000021629.11	ENSMUST00000067246.6	3179	16	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_14	28.3666470818577	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATTTGCAAATGAATAATT	NA	False	NA	-4	True	AATAAA	-19	NA	100969935	100939155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_100939970_100940369_100940499_100943041_100943269_100945591_100945788_100947813_100947944_100949155_100949314_100949805_100950015_100950190_100950480_100951103_100951275_100953516_100953594_100954633_100954722_100957626_100957715_100961423_100961510_100962959_100963027_100965407_100965531_100969608
transcript_25930.known	chr13	-	793	1	FSM	ENSMUSG00000114738.2	ENSMUST00000225803.2	793	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTAAATGTACACTGAATT	NA	False	NA	NA	False	AAAAAG	-30	NA	101046397	101045604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_101045600_101046400
transcript_25931.known	chr13	-	7113	16	FSM	ENSMUSG00000041417.16	ENSMUST00000055518.13	7113	16	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_10	7.37443029814658	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGTTCTTGCTATTCAA	NA	False	NA	NA	False	AATAAA	-25	NA	101904725	101817070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_101821578_101822715_101822887_101823480_101823550_101823638_101823816_101824008_101824152_101825140_101825267_101825486_101825668_101825906_101826006_101826988_101827092_101837954_101838035_101838218_101838421_101839216_101839349_101845427_101845503_101846157_101846251_101893833_101894548_101904484
transcript_25933.known	chr13	-	249	2	FSM	ENSMUSG00000034751.18	ENSMUST00000211607.2	249	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTTAGGCGAGATCATTAT	NA	False	NA	NA	False	NA	NA	NA	103308037	103304524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_103304647_103307910
transcript_25935.known	chr13	-	3934	12	FSM	ENSMUSG00000032621.9	ENSMUST00000074616.7	3934	12	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_3	30.0305629441708	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTCTTCAGTTTCTATTCC	9992	False	NA	3	True	AATAAA	-21	NA	103911116	103878119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_103880225_103881292_103881438_103885266_103885363_103888901_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103896923_103897103_103897537_103897703_103900389_103900515_103905824_103905959_103910806
transcript_2594.known	chr1	+	1439	11	FSM	ENSMUSG00000006304.15	ENSMUST00000113820.9	1439	11	0	0	0	0	multi-exon	TRUE	canonical	3	1389	junction_1	306.215936881149	5166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAGAATTTGTTGATTTT	7828	False	NA	14	True	AATAAA	-19	NA	74275655	74307368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_74275770_74275976_74276059_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303003_74303511_74303613_74306929
transcript_25940.nic	chr13	-	1709	10	ISM	ENSMUSG00000032621.9	ENSMUST00000074616.7	3934	12	-25	7147	-25	3709	5prime_fragment	FALSE	canonical	3	148	junction_1	32.4257937260668	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGGTGGATGCGTCTGCTG	10008	False	NA	NA	False	AAGAAA	-28	NA	103911141	103885266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_103885363_103888901_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103896923_103897103_103897537_103897703_103900389_103900515_103905824_103905959_103910806
transcript_25942.nic	chr13	-	2549	9	ISM	ENSMUSG00000032621.9	ENSMUST00000074616.7	3934	12	-25	9846	-25	1010	5prime_fragment	FALSE	canonical	3	167	junction_7	26.6760074786314	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGTTTTTCATTGCATAT	10008	False	NA	NA	False	AATAAA	-20	NA	103911141	103887965	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103896923_103897103_103897537_103897703_103900389_103900515_103905824_103905959_103910806
transcript_25943.nic	chr13	-	1805	9	ISM	ENSMUSG00000032621.9	ENSMUST00000074616.7	3934	12	-25	10590	-25	266	5prime_fragment	FALSE	canonical	3	167	junction_7	26.6760074786314	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTCTGTTTCTGTTAATC	10008	False	NA	NA	False	NA	NA	NA	103911141	103888709	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103896923_103897103_103897537_103897703_103900389_103900515_103905824_103905959_103910806
transcript_25944.nic	chr13	-	1464	9	ISM	ENSMUSG00000032621.9	ENSMUST00000074616.7	3934	12	-25	10931	-25	0	5prime_fragment	FALSE	canonical	3	167	junction_7	26.6760074786314	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GACAAAGAAAAGGAGAAGGA	10008	False	NA	-78	True	GATAAA	-37	NA	103911141	103889050	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103896923_103897103_103897537_103897703_103900389_103900515_103905824_103905959_103910806
transcript_25946.known	chr13	-	6224	26	FSM	ENSMUSG00000021709.15	ENSMUST00000091269.11	6224	26	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_5	14.0566852422611	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGAGTCTTGGTGTTGCCT	NA	False	NA	-5	True	NA	NA	NA	104056803	103955298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_103957315_103959318_103959394_103959821_103959915_103961227_103961435_103964414_103964532_103970005_103971537_103975814_103975999_103977661_103977777_103979964_103980142_103981321_103981496_103982011_103982134_103987252_103987353_103991326_103991397_103993502_103993619_103993918_103994049_103994358_103994432_103995883_103996029_103996578_103996654_103998787_103998852_104003156_104003214_104004550_104004641_104005327_104005407_104020650_104020769_104022648_104022847_104025745_104025794_104056753
transcript_25947.known	chr13	-	4162	13	FSM	ENSMUSG00000021710.12	ENSMUST00000109315.5	4162	13	0	0	0	0	multi-exon	TRUE	canonical	3	279	junction_1	22.4276614920058	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATGAGCTCACAGTACTT	NA	False	NA	-13	True	AATAAA	-19	NA	104246122	104159564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_104161589_104172094_104172232_104173361_104173491_104173805_104173993_104182696_104182899_104187002_104187370_104189011_104189148_104195248_104195410_104195974_104196078_104198252_104198361_104205702_104205852_104209270_104209531_104245923
transcript_25956.nic	chr13	-	1232	6	ISM	ENSMUSG00000021710.12	ENSMUST00000224945.2	2486	12	-81	23331	-53	8982	5prime_fragment	FALSE	canonical	3	279	junction_3	24.5812937006985	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAAGTTGTATTCCTTTC	NA	False	NA	NA	False	AGTAAA	-22	NA	104246175	104195049	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_104195410_104195974_104196078_104198252_104198361_104205702_104205852_104209270_104209531_104245923
transcript_25957.nic	chr13	-	1152	6	ISM	ENSMUSG00000021710.12	ENSMUST00000224945.2	2486	12	-81	23411	-53	8902	5prime_fragment	FALSE	canonical	3	279	junction_3	24.5812937006985	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTTCTTTTCCTCGTCA	NA	False	NA	NA	False	NA	NA	NA	104246175	104195129	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_104195410_104195974_104196078_104198252_104198361_104205702_104205852_104209270_104209531_104245923
transcript_25959.nic	chr13	-	1213	5	ISM	ENSMUSG00000021710.12	ENSMUST00000224945.2	2486	12	-81	23915	-53	8398	5prime_fragment	FALSE	canonical	3	279	junction_2	26.9756834945845	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGGAACATTTTTGTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	104246175	104195633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_104196078_104198252_104198361_104205702_104205852_104209270_104209531_104245923
transcript_25960.nic	chr13	-	950	5	ISM	ENSMUSG00000021710.12	ENSMUST00000224945.2	2486	12	-81	24178	-53	8135	5prime_fragment	FALSE	canonical	3	279	junction_2	26.9756834945845	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTAGTATCAGCGCTG	NA	False	NA	NA	False	ATTAAA	-22	NA	104246175	104195896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_104196078_104198252_104198361_104205702_104205852_104209270_104209531_104245923
transcript_25961.known	chr13	-	1924	3	FSM	ENSMUSG00000021710.12	ENSMUST00000224058.2	1924	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	139.5	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCCTTTGTTTATGTAGT	5364	False	NA	-6	True	AATAAA	-37	NA	104173075	104159915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_104161589_104172094_104172232_104172961
transcript_25962.known	chr13	-	2486	12	FSM	ENSMUSG00000021710.12	ENSMUST00000224945.2	2486	12	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_9	21.8272708341221	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATAGTCTCTGTGTTGTGA	NA	False	NA	NA	False	AAGAAA	-21	NA	104246094	104171718	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_104172232_104173361_104173491_104173805_104173993_104182696_104182899_104187002_104187370_104189011_104189148_104195248_104195410_104195974_104196078_104198252_104198361_104205702_104205852_104209270_104209531_104245923
transcript_25963.known	chr13	+	3048	11	FSM	ENSMUSG00000042743.14	ENSMUST00000044385.14	3048	11	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_7	16.2775919595006	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGATTTTCTTTCCAGTCA	NA	False	NA	NA	False	NA	NA	NA	104246248	104278243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_104246478_104247577_104247698_104254831_104254936_104257974_104258045_104260697_104260798_104265736_104265842_104268444_104268584_104268673_104268737_104271111_104271150_104271347_104271432_104276247
transcript_25970.nic	chr13	+	747	4	ISM	ENSMUSG00000042743.14	ENSMUST00000044385.14	3048	11	6	19969	6	-10221	5prime_fragment	FALSE	canonical	3	62	junction_2	12.9700509722291	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCTTGCTATTTGACTC	NA	False	NA	NA	False	AATAAA	-26	NA	104246254	104258274	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_+_104246478_104247577_104247698_104254831_104254936_104257974
transcript_25983.known	chr13	-	1609	2	FSM	ENSMUSG00000118537.2	ENSMUST00000133280.2	1609	2	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	0	352	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCTGATTTTGTATTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	104314947	104310229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_104311513_104314621
transcript_25985.known	chr13	-	1689	13	FSM	ENSMUSG00000021711.18	ENSMUST00000179891.2	1689	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	299.157242191386	806	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAACATTTCTTTATTT	NA	False	NA	22	True	AAAACA	-33	NA	104314915	104280461	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_104280754_104280911_104281063_104283751_104283853_104284591_104284791_104286557_104286692_104290727_104290742_104290799_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
transcript_25986.known	chr13	-	3538	12	FSM	ENSMUSG00000021711.18	ENSMUST00000144060.8	3538	12	0	0	0	0	multi-exon	TRUE	canonical	3	331	junction_5	157.730704704606	930	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATCTGAGTCAACTATTAT	NA	False	NA	NA	False	AATAAA	-25	NA	104314977	104278656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_104280754_104280911_104281063_104283751_104283853_104284591_104284791_104286557_104286692_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
transcript_25987.known	chr13	-	3502	13	FSM	ENSMUSG00000021711.18	ENSMUST00000141557.8	3502	13	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_6	206.169209766045	619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATAAAGGATCTGAGTCAA	NA	False	NA	NA	False	AATAAA	-18	NA	104314933	104278663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_104280754_104280911_104281060_104283751_104283853_104284591_104284791_104286557_104286692_104288672_104288691_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
transcript_25988.known	chr13	-	2342	13	FSM	ENSMUSG00000021711.18	ENSMUST00000022224.16	2342	13	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_6	196.200152905139	820	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCTGATTTTTTTCTTTC	NA	False	NA	-2	True	AATAAA	-42	NA	104314931	104279824	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_104280754_104280911_104281063_104283751_104283853_104284591_104284791_104286557_104286692_104288672_104288691_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
transcript_25989.known	chr13	+	3416	11	FSM	ENSMUSG00000021712.16	ENSMUST00000022225.12	3416	11	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_1	34.1	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTGACTGTGACGTATA	NA	False	NA	11	True	AATATA	-25	NA	104315304	104339525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_104315470_104317581_104317745_104321233_104321356_104323908_104324188_104324568_104324752_104326170_104326387_104328524_104328660_104334497_104334628_104335101_104335213_104336576_104336702_104337738
transcript_26.known	ERCC-00058	+	1120	1	FSM	ERCC-00058A	DQ459418	1120	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1120	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00058_+_0_1100
transcript_2600.known	chr1	+	1313	11	FSM	ENSMUSG00000006304.15	ENSMUST00000113819.2	1313	11	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	696.999605451825	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAATTCC	7881	False	NA	18	True	NA	NA	NA	74275708	74307147	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_74275770_74275976_74276207_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303003_74303511_74303613_74306929
transcript_26005.known	chr13	-	2342	11	FSM	ENSMUSG00000021713.10	ENSMUST00000022226.6	2342	11	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_6	27.1368752806951	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATACGTGTCAAATGAC	NA	False	NA	-13	True	TATAAA	-11	NA	104365330	104341631	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_104342156_104343606_104343790_104344504_104344587_104346121_104346304_104350033_104350224_104353596_104353788_104356544_104356993_104359345_104359467_104359599_104359701_104361857_104361961_104365113
transcript_26010.known	chr13	+	1306	10	FSM	ENSMUSG00000021714.16	ENSMUST00000070761.10	1306	10	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_9	143.8340092684	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACTTTATGTAAAATATTG	NA	False	NA	NA	False	AATAAA	-13	NA	104365462	104383641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_104365511_104367236_104367388_104369165_104369223_104370654_104370728_104372686_104372734_104378696_104378780_104378862_104378962_104379253_104379381_104381785_104381840_104383074
transcript_26012.known	chr13	+	1353	10	FSM	ENSMUSG00000021714.16	ENSMUST00000224500.2	1353	10	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_4	127.2119840616	1069	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCATAGTTTGTCTTTGTT	NA	False	NA	10	True	AATAAA	-21	NA	104365118	104386125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_104365511_104367236_104367388_104369165_104369223_104370654_104370741_104372686_104372734_104378696_104378780_104378862_104378962_104379253_104379381_104381785_104381840_104385868
transcript_26020.nnic	chr13	+	1105	10	NNC	ENSMUSG00000021714.16	novel	1353	10	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_1	135.125547474365	637	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCATAGTTTGTCTTTGTT	NA	False	NA	10	True	AATAAA	-21	NA	104365435	104386125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_104365593_104367236_104367388_104369165_104369223_104370654_104370728_104372686_104372734_104378696_104378780_104378862_104378962_104379253_104379381_104381785_104381840_104385868
transcript_26034.known	chr13	+	856	8	FSM	ENSMUSG00000021714.16	ENSMUST00000224857.2	856	8	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_4	143.945426166606	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTTTAAAGATTTAACATT	NA	False	NA	NA	False	AATAAA	-19	NA	104365483	104379559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_104365511_104367236_104367388_104369165_104369223_104370654_104370741_104372686_104372734_104378696_104378780_104378862_104378962_104379253
transcript_26043.known	chr13	-	1375	5	FSM	ENSMUSG00000021713.10	ENSMUST00000225798.2	1375	5	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_3	28.4198434196953	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCCACACTCCACGGAGGG	NA	False	NA	NA	False	TATAAA	-21	NA	104365351	104356180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_104356993_104359345_104359467_104359599_104359701_104361857_104361961_104365113
transcript_26051.known	chr13	-	2071	14	FSM	ENSMUSG00000021715.13	ENSMUST00000022228.13	2071	14	0	0	0	0	multi-exon	FALSE	canonical	3	502	junction_8	84.1316241226496	2079	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGCCTCCCGCTTTATT	NA	False	NA	1	True	AATAAA	-37	NA	104953461	104767647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_104768247_104794536_104794641_104797814_104797925_104856929_104857028_104929006_104929159_104932917_104932952_104933771_104933852_104938639_104938710_104940758_104940863_104941425_104941525_104943144_104943289_104944227_104944341_104947724_104947822_104953194
transcript_26054.known	chr13	+	2365	5	FSM	ENSMUSG00000021716.15	ENSMUST00000022230.15	2365	5	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_4	17.2536228079786	2468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATAAAAGTCATTTTTA	NA	False	NA	NA	False	AATAAA	-18	NA	104953684	104975782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_104953875_104963562_104963611_104969361_104969506_104970755_104970829_104973872
transcript_26059.known	chr13	+	1806	5	FSM	ENSMUSG00000021716.15	ENSMUST00000156105.2	1806	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	69.8368634748154	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTAAGTGTCTCTGAGGT	NA	False	NA	17	True	TATAAA	-27	NA	104953746	104975177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_104953875_104963562_104963611_104969361_104969614_104970755_104970829_104973872
transcript_26062.nic	chr13	+	373	3	ISM	ENSMUSG00000021716.15	ENSMUST00000156105.2	1806	5	-53	5672	9	-1272	5prime_fragment	FALSE	canonical	3	151	junction_1	15.5	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAAGCCGTGGTTCCTGCCC	NA	False	NA	NA	False	AAGAAA	-40	NA	104953693	104969505	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_+_104953875_104963562_104963611_104969361
transcript_26065.known	chr13	-	507	3	FSM	ENSMUSG00000042655.6	ENSMUST00000223913.2	507	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	6	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTTGTTTGTTATGTT	NA	False	NA	NA	False	NA	NA	NA	104999820	104982333	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_104982572_104994796_104994955_104999709
transcript_26066.known	chr13	-	1310	3	FSM	ENSMUSG00000042655.6	ENSMUST00000043061.5	1310	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	1	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTTTCAATGACAAATGTA	NA	False	NA	NA	False	AATAAA	-18	NA	105000401	104981790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_104982572_104994796_104994955_105000030
transcript_26067.known	chr13	-	7077	6	FSM	ENSMUSG00000021719.10	ENSMUST00000063551.7	7077	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.6	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGGAGTCATTGTAAGTC	NA	False	NA	NA	False	AATAAA	-15	NA	105191438	105082411	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_105088091_105100591_105100663_105103488_105103637_105119373_105119505_105189465_105189633_105190557
transcript_26068.known	chr13	-	3279	8	FSM	ENSMUSG00000021720.12	ENSMUST00000226044.2	3279	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.8070158058105	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAGAGATGCATGCTTGT	NA	False	NA	NA	False	ATTAAA	-9	NA	105430910	105266508	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_105268072_105304035_105304162_105317957_105318184_105383170_105383207_105386118_105387076_105388759_105388856_105407412_105407548_105430770
transcript_26075.known	chr13	-	4325	30	FSM	ENSMUSG00000042590.18	ENSMUST00000080856.14	4325	30	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	115.519794104579	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGACTTGTTGTCTGTT	NA	False	NA	-6	True	ATTAAA	-19	NA	107073466	106930946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_106932304_106948715_106948801_106959463_106959560_106978596_106978719_106983853_106983968_106984748_106984845_106993245_106993327_106993736_106993817_106997368_106997446_107002372_107002489_107007182_107007297_107011998_107012116_107012746_107012788_107013442_107013477_107016120_107016248_107019349_107019456_107020033_107020082_107023174_107023266_107025870_107025915_107028123_107028277_107028930_107029124_107032312_107032384_107033723_107033773_107035426_107035486_107037192_107037326_107046707_107046912_107047251_107047325_107056031_107056133_107061520_107061665_107073267
transcript_26084.nic	chr13	-	2646	10	NIC	ENSMUSG00000042590.18	novel	2484	22	NA	NA	11	-30324	intron_retention	FALSE	canonical	3	480	junction_9	34.7662387672968	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAGAAAAAACTAGCTGT	NA	False	NA	NA	False	NA	NA	NA	107073442	107027486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_-_107029124_107032312_107032384_107033723_107033773_107035426_107035486_107037192_107037326_107046707_107046912_107047251_107047325_107056031_107056133_107061520_107061665_107073267
transcript_26088.known	chr13	+	2051	12	FSM	ENSMUSG00000021692.10	ENSMUST00000022203.10	2051	12	0	0	0	0	multi-exon	TRUE	canonical	3	504	junction_4	50.5395680025492	1844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCGCCTACAGTTTTTCC	NA	False	NA	NA	False	AGTAAA	-13	NA	107083666	107096268	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_107083792_107084093_107084168_107085208_107085296_107086062_107086125_107086199_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107091183_107091248_107093601_107093709_107095162
transcript_26089.known	chr13	+	3338	10	FSM	ENSMUSG00000021692.10	ENSMUST00000223870.2	3338	10	0	0	0	0	multi-exon	FALSE	canonical	3	551	junction_4	41.347966346456	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGCAAGTTTGTGTCTTT	NA	False	NA	NA	False	ATTAAA	-21	NA	107083685	107096732	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_107083792_107084093_107084168_107085208_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107091183_107091248_107093601_107093709_107095162
transcript_26091.known	chr13	+	1810	3	FSM	ENSMUSG00000071181.3	ENSMUST00000225489.2	1810	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATTATAATGTTATTAT	NA	False	NA	NA	False	ATTAAA	-17	NA	107159060	107168554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_107160491_107162906_107162964_107168231
transcript_26092.known	chr13	+	340	2	FSM	ENSMUSG00000114893.2	ENSMUST00000224166.2	340	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCTATAAACATACATGAGT	NA	False	NA	NA	False	AATAAA	-25	NA	107170791	107171725	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_107170837_107171430
transcript_26097.nnic	chr13	-	821	2	Genic_Genomic	ENSMUSG00000049233.8	novel	586	1	NA	NA	-40	293	multi-exon	FALSE	canonical	0	0	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAATATTG	NA	False	NA	NA	False	ATTAAA	-26	NA	107551269	107550350	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr13_-_107550852_107550949
transcript_26098.nnic	chr13	-	811	2	Genic_Genomic	ENSMUSG00000049233.8	novel	586	1	NA	NA	-40	293	multi-exon	FALSE	canonical	2	16	junction_1	0	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAATATTG	NA	False	NA	NA	False	ATTAAA	-26	NA	107551269	107550350	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr13_-_107551121_107551228
transcript_26099.known	chr13	-	586	1	FSM	ENSMUSG00000049233.8	ENSMUST00000061241.8	586	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAAAACTCCATGCTCTGC	NA	False	NA	NA	False	AATAAA	-1	NA	107551229	107550643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_107550600_107551200
transcript_261.known	SIRV3	+	2018	3	FSM	SIRV3A	SIRV303	2018	3	0	0	0	0	multi-exon	FALSE	canonical	3	1857	junction_1	482	1416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTAACAGGTTCTCAAC	NA	False	NA	NA	False	NA	NA	NA	1963	7822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV3_+_2006_4568_4780_6057
transcript_26128.known	chr13	-	678	4	FSM	ENSMUSG00000068184.8	ENSMUST00000163558.3	678	4	0	0	0	0	multi-exon	FALSE	canonical	3	548	junction_2	39.4151691047439	4083	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCGTATTTCCTGACT	NA	False	NA	-1	True	AATAAA	-15	NA	108295157	108189122	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_108189489_108217886_108217928_108228067_108228158_108294976
transcript_26129.known	chr13	-	556	3	FSM	ENSMUSG00000068184.8	ENSMUST00000223734.2	556	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	306.5	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATTGTAAGGATATGGCT	NA	False	NA	-50	True	NA	NA	NA	108295125	108189171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_108189489_108228067_108228158_108294976
transcript_26130.known	chr13	+	1918	3	FSM	ENSMUSG00000071180.6	ENSMUST00000095458.6	1918	3	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	47	918	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTCCTGAGTTTTTGTCT	NA	False	NA	NA	False	AATAAA	-44	NA	108180979	108185706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_108181021_108182958_108183103_108183973
transcript_26132.known	chr13	+	2097	3	FSM	ENSMUSG00000071180.6	ENSMUST00000225972.2	2097	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	82	508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTCCTGAGTTTTTGTCT	NA	False	NA	NA	False	AATAAA	-44	NA	108181022	108185706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_108181243_108182958_108183103_108183973
transcript_26134.known	chr13	+	1092	3	FSM	ENSMUSG00000071180.6	ENSMUST00000226042.2	1092	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	87.5	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAGCTTAAAGTATTCAAG	NA	False	NA	NA	False	AGTAAA	-32	NA	108181019	108184773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_108181168_108182958_108183103_108183973
transcript_26145.known	chr13	+	2111	12	FSM	ENSMUSG00000021694.19	ENSMUST00000054835.15	2111	12	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_3	12.8281714780819	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTCTTTCCTTTCCTTGT	NA	False	NA	7	True	ATTAAA	-18	NA	108295271	108331519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_108295405_108297168_108297265_108302923_108303026_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589
transcript_26149.known	chr13	+	2095	12	FSM	ENSMUSG00000021694.19	ENSMUST00000152634.8	2095	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	31.8161038282489	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTCTTTCCTTTCCTTGT	NA	False	NA	7	True	ATTAAA	-18	NA	108295287	108331519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_108295405_108297168_108297265_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108312338_108312441_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589
transcript_26157.known	chr13	+	2395	11	FSM	ENSMUSG00000021694.19	ENSMUST00000123657.8	2395	11	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	15.1489273547667	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGATAGAAAATAAAACT	NA	False	NA	NA	False	NA	NA	NA	108295264	108331898	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_108295405_108297168_108297265_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589
transcript_26165.known	chr13	+	1144	6	FSM	ENSMUSG00000021694.19	ENSMUST00000120672.8	1144	6	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_3	17.3712406004868	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATGGAATGAATACCCTT	NA	False	NA	NA	False	AATAAA	-15	NA	108295271	108311132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_108295405_108297168_108297265_108302923_108303026_108305901_108306026_108309235_108309318_108310525
transcript_26166.known	chr13	+	2351	8	FSM	ENSMUSG00000021696.10	ENSMUST00000225550.2	2351	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	34.299997025049	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACTATGAGTTTTGCCT	NA	False	NA	NA	False	AATAAA	-20	NA	108350943	108420607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_108351035_108393200_108393333_108403723_108403869_108407166_108407248_108408338_108408396_108410819_108410926_108416110_108416248_108419005
transcript_26169.known	chr13	+	4013	8	FSM	ENSMUSG00000021696.10	ENSMUST00000022207.10	4013	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	37.4045724586758	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTTGTCATGTCTAACT	NA	False	NA	NA	False	NA	NA	NA	108350937	108422217	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_108351035_108393200_108393333_108403723_108403915_108407166_108407248_108408338_108408396_108410819_108410926_108416110_108416248_108419005
transcript_26177.known	chr13	+	2563	11	FSM	ENSMUSG00000021697.13	ENSMUST00000051594.12	2563	11	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_3	8.78009111570034	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTGTGTTTTTCTTCTT	2847	False	NA	39	True	NA	NA	NA	108452865	108526119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_108453004_108460439_108460706_108493927_108494064_108498768_108498897_108500066_108500198_108505346_108505395_108510246_108510388_108519289_108519457_108521259_108521437_108523368_108523555_108525074
transcript_26179.known	chr13	+	674	2	FSM	ENSMUSG00000021697.13	ENSMUST00000168037.2	674	2	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGTAACTTAGTGCTTCT	2883	False	NA	NA	False	NA	NA	NA	108452901	108461011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_108453004_108460439
transcript_26189.nnic	chr13	-	802	2	Antisense	novelGene_ENSMUSG00000059751.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	960	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAACTGCATTTTTTAAAT	NA	False	NA	NA	False	NA	NA	NA	108807988	108807112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr13_-_108807449_108807522
transcript_26192.known	chr13	+	795	1	FSM	ENSMUSG00000059751.8	ENSMUST00000074680.8	795	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	70056	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCAGATTTTTAATAGTG	NA	False	NA	NA	False	NA	NA	NA	108807136	108807931	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_108807100_108807900
transcript_26193.known	chr13	-	8444	5	FSM	ENSMUSG00000021700.11	ENSMUST00000167824.3	8444	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTAGTCTAGTGAATCTT	NA	False	NA	3	True	AATAAA	-26	NA	110416684	110190720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_110198537_110220663_110220789_110317512_110317632_110397012_110397241_110416528
transcript_26194.known	chr13	+	2800	14	FSM	ENSMUSG00000021701.9	ENSMUST00000022212.9	2800	14	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	11.0769230769231	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGGTCTCCTGTCCTTGC	NA	False	NA	6	True	AATAAA	-17	NA	110531579	110537378	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_110531972_110532548_110532657_110532809_110532927_110533124_110533255_110533440_110533529_110534004_110534101_110534221_110534421_110534507_110534656_110534906_110535005_110535212_110535343_110535554_110535796_110535913_110536044_110536296_110536408_110536566
transcript_262.known	SIRV3	+	2373	3	FSM	SIRV3A	SIRV306	2373	3	0	0	0	0	multi-exon	FALSE	canonical	3	759	junction_2	1218.5	1260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTACCTAACAGTAAAAGAGT	NA	False	NA	NA	False	NA	NA	NA	1944	8292	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV3_+_2006_4003_4081_6057
transcript_26202.known	chr13	-	3694	13	FSM	ENSMUSG00000032745.19	ENSMUST00000047627.14	3694	13	0	0	0	0	multi-exon	FALSE	canonical	3	874	junction_7	122.771100245765	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGTTGTTCTTTGTAGTG	NA	False	NA	-4	True	AATAAA	-15	NA	111626645	111562213	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577165_111577351_111584429_111584490_111585466_111585534_111589557_111589782_111589906_111590031_111603384_111603505_111623956_111624905_111626251
transcript_26207.known	chr13	-	3299	12	FSM	ENSMUSG00000032745.19	ENSMUST00000091236.11	3299	12	0	0	0	0	multi-exon	FALSE	canonical	3	389	junction_6	235.263031976713	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACCTTTCCAAACAAATTC	NA	False	NA	NA	False	ACTAAA	-35	NA	111626562	111562465	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577165_111577351_111585466_111585534_111589557_111589782_111589906_111590031_111603384_111603505_111623956_111624905_111626251
transcript_26213.known	chr13	-	1940	11	FSM	ENSMUSG00000032745.19	ENSMUST00000136471.9	1940	11	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_8	352.533700516702	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCTGTCTTAAAATGTTC	NA	False	NA	-2	True	AATAAA	-23	NA	111624246	111562691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577165_111577351_111584429_111584490_111585466_111585534_111589906_111590031_111603384_111603505_111623956
transcript_26214.known	chr13	-	663	2	FSM	ENSMUSG00000085634.3	ENSMUST00000132880.3	663	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGTTTTTTTTGTTTTGT	NA	False	NA	NA	False	ATTAAA	-14	NA	111686445	111658883	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_111659245_111686143
transcript_2622.known	chr1	+	1404	10	FSM	ENSMUSG00000006304.15	ENSMUST00000006467.14	1404	10	0	0	0	0	multi-exon	FALSE	canonical	3	1867	junction_3	197.32307280632	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAATTC	7848	False	NA	17	True	NA	NA	NA	74275675	74307146	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_74276059_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303003_74303511_74303613_74306929
transcript_26226.nnic	chr13	+	515	4	NNC	ENSMUSG00000086649.2	novel	621	4	NA	NA	-25	29	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	12.0277457017791	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGGTGAACACAATTTT	836	False	NA	26	True	NA	NA	NA	111716769	111781393	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_111716936_111717450_111717511_111778756_111778863_111781210
transcript_26227.known	chr13	+	621	4	FSM	ENSMUSG00000086649.2	ENSMUST00000156236.2	621	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	8.73053390247253	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGCTACCGAAAACACTT	861	False	NA	-3	True	NA	NA	NA	111716794	111781364	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_111716936_111717450_111717511_111778756_111779023_111781210
transcript_26229.nic	chr13	+	1321	3	ISM	ENSMUSG00000086649.2	ENSMUST00000156236.2	621	4	-25	1513	-25	482	5prime_fragment	FALSE	canonical	3	32	junction_1	0.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTATGAGTTTTTCTTTTT	836	False	NA	NA	False	NA	NA	NA	111716769	111779851	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_+_111716936_111717450_111717511_111778756
transcript_26230.known	chr13	+	5279	13	FSM	ENSMUSG00000032727.15	ENSMUST00000109272.9	5279	13	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	13.5800098183568	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGGGTCGTGTGACTAT	NA	False	NA	9	True	AATAAA	-17	NA	111822711	111855130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_111822889_111824361_111824387_111827769_111827916_111840162_111840298_111841755_111841877_111842535_111842622_111843171_111843248_111844747_111844900_111846259_111846342_111848219_111848315_111850774_111850903_111850978_111851122_111851217
transcript_26233.known	chr13	+	1005	8	FSM	ENSMUSG00000049985.16	ENSMUST00000168684.2	1005	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.349927106111883	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGATTATATCCCTAATTGCT	6888	False	NA	NA	False	AATAAA	-22	NA	112425051	112492715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_112425132_112425421_112425517_112454958_112455082_112459585_112459717_112463662_112463773_112472748_112472810_112485267_112485397_112492439
transcript_26239.nnic	chr13	+	1829	6	NNC	ENSMUSG00000021756.13	novel	3004	6	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_5	158.377523657873	24	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCGTTCCAATATTATTGC	NA	False	NA	NA	False	AATAAA	-19	NA	112600595	112620150	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_112600785_112609120_112609208_112611564_112611644_112616518_112616825_112617957_112618079_112619103
transcript_26240.nnic	chr13	+	2327	6	NNC	ENSMUSG00000021756.13	novel	8678	17	NA	NA	-8	498	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_5	158.377523657873	26	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTCTTCTGCATAGCTTAA	NA	False	NA	NA	False	AATAAA	-20	NA	112600595	112620648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_112600785_112609120_112609208_112611564_112611644_112616518_112616825_112617957_112618079_112619103
transcript_26241.nnic	chr13	+	1302	6	NNC	ENSMUSG00000021756.13	novel	3004	6	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_5	163.571880223955	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCGTTCCAATATTATTGC	NA	False	NA	NA	False	AATAAA	-19	NA	112600595	112620150	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_112600785_112609120_112609208_112611564_112611644_112616518_112616825_112617957_112618079_112619630
transcript_26247.nic	chr13	+	637	3	ISM	ENSMUSG00000021756.13	ENSMUST00000184276.8	3009	18	-179	29154	-8	-4666	5prime_fragment	FALSE	canonical	3	401	junction_2	2.5	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTAGTCCTTTTCTTCTC	NA	False	NA	NA	False	AATAAA	-24	NA	112600595	112611925	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_+_112600785_112609120_112609208_112611564
transcript_26248.nic	chr13	+	1234	2	ISM	ENSMUSG00000021756.13	ENSMUST00000184276.8	3009	18	-179	30914	-8	-6426	5prime_fragment	FALSE	canonical	3	406	junction_1	0	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAACAACAAAAAAAGCTTCC	NA	False	NA	NA	False	NA	NA	NA	112600595	112610165	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_+_112600785_112609120
transcript_26249.known	chr13	-	3012	22	FSM	ENSMUSG00000021758.15	ENSMUST00000099166.10	3012	22	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	9.06389513461723	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTTCCAACAGCATTTT	NA	False	NA	-1	True	AATAAA	-22	NA	112789009	112734868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_112735566_112736151_112736269_112736385_112736657_112737945_112738046_112741020_112741167_112748508_112748676_112750230_112750361_112757149_112757305_112757741_112757895_112758698_112758842_112759191_112759240_112759332_112759381_112761314_112761357_112761878_112761960_112762855_112762958_112765371_112765432_112770418_112770470_112772501_112772580_112777683_112777762_112781042_112781101_112787865_112787953_112788809
transcript_2625.known	chr1	-	1756	11	FSM	ENSMUSG00000006299.14	ENSMUST00000178235.8	1756	11	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_10	361.877106211487	2197	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCAGTGTCTGTGTGCAT	NA	False	NA	-5	True	AATAAA	-13	NA	74323839	74319004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_74319469_74319941_74320097_74320247_74320339_74320487_74320592_74320685_74320802_74320894_74320979_74321185_74321331_74321569_74321710_74322252_74322373_74323044_74323204_74323661
transcript_26256.nnic	chr13	+	1841	15	NNC	ENSMUSG00000047789.6	novel	8910	15	NA	NA	-5	-7005	at_least_one_novel_splicesite	TRUE	canonical	2	5	junction_1	12.5633090662404	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCATTGCTGTAATTCTAA	NA	False	NA	14	True	CATAAA	-16	NA	112797294	112868272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_112797344_112806120_112806266_112822599_112822733_112825806_112825929_112826055_112826120_112826692_112826787_112831774_112831946_112834518_112834579_112837990_112838186_112840071_112840180_112850674_112850782_112859731_112859846_112862580_112862730_112865731_112865822_112868032
transcript_26257.known	chr13	+	8910	15	FSM	ENSMUSG00000047789.6	ENSMUST00000052514.6	8910	15	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	7.31122983038101	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATATTTTTTCTTGTTAT	NA	False	NA	NA	False	AATAAA	-19	NA	112797299	112875283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_112797407_112806120_112806266_112822599_112822733_112825806_112825929_112826055_112826120_112826692_112826787_112831774_112831946_112834518_112834579_112837990_112838186_112840071_112840180_112850674_112850782_112859731_112859846_112862580_112862730_112865731_112865822_112868032
transcript_26262.nic	chr13	+	602	4	ISM	ENSMUSG00000047789.6	ENSMUST00000052514.6	8910	15	-49	49309	-34	-754	5prime_fragment	FALSE	canonical	3	26	junction_2	10.2089285540757	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAACTGGCTGTTTACTTC	NA	False	NA	NA	False	ATTAAA	-14	NA	112797250	112825974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_+_112797407_112806120_112806266_112822599_112822733_112825806
transcript_26264.known	chr13	+	2063	3	FSM	ENSMUSG00000047789.6	ENSMUST00000223674.2	2063	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	23	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATCAAGCTTCAGTTCTT	NA	False	NA	NA	False	AATAAA	-13	NA	112797314	112810219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_112797407_112806120_112806266_112808393
transcript_26266.nic	chr13	+	1227	2	ISM	ENSMUSG00000047789.6	ENSMUST00000223674.2	2063	3	-64	3028	-34	519	5prime_fragment	FALSE	canonical	3	46	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGAAAAGAAAAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	112797250	112807191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_+_112797407_112806120
transcript_26267.known	chr13	+	1178	1	FSM	ENSMUSG00000047789.6	ENSMUST00000225367.2	1178	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	112797284	112798462	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_112797300_112798500
transcript_26280.known	chr13	+	1598	6	FSM	ENSMUSG00000021759.15	ENSMUST00000016144.12	1598	6	0	0	0	0	multi-exon	FALSE	canonical	3	199	junction_2	66.7730484551964	682	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTTTGTAGTCAGTTGCAA	9637	False	NA	14	True	AATAAA	-29	NA	112937325	113004428	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_112937801_112971392_112971548_112993279_112993561_112996177_112996236_113003329_113003507_113003976
transcript_26282.known	chr13	+	1272	6	FSM	ENSMUSG00000021759.15	ENSMUST00000070951.8	1272	6	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	139.137342219837	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGTACAGACCATTCTATA	9708	False	NA	NA	False	NA	NA	NA	112937396	113004176	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_112937801_112987936_112988089_112993279_112993561_112996177_112996236_113003329_113003507_113003976
transcript_26285.nnic	chr13	+	1260	5	NNC	ENSMUSG00000021759.15	novel	1598	6	NA	NA	-1706	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	139.925873232937	125	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTTTGTAGTCAGTTGCAA	7931	False	NA	14	True	AATAAA	-29	NA	112935619	113004428	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_112935912_112993279_112993561_112996177_112996236_113003329_113003507_113003976
transcript_26287.nnic	chr13	+	1468	5	NIC	ENSMUSG00000021759.15	novel	1598	6	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	3	68	junction_1	115.720298565118	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTTTGTAGTCAGTTGCAA	9612	False	NA	14	True	AATAAA	-29	NA	112937300	113004428	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_112937801_112993279_112993561_112996177_112996236_113003329_113003507_113003976
transcript_2629.known	chr1	-	2378	12	FSM	ENSMUSG00000006301.18	ENSMUST00000016309.16	2378	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	38.8406364690682	295	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGAGTTGCTGTGGCTT	NA	False	NA	-6	True	AATAAA	-22	NA	74343564	74327405	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_74328678_74329029_74329084_74329910_74330007_74330358_74330447_74330589_74330628_74330853_74330894_74331615_74331667_74331993_74332048_74332163_74332229_74333066_74333162_74334356_74334599_74343281
transcript_26290.known	chr13	+	4682	27	FSM	ENSMUSG00000042426.7	ENSMUST00000038574.7	4682	27	0	0	0	0	multi-exon	TRUE	canonical	3	222	junction_12	28.2580040501697	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTCCATCTCTGTGT	NA	False	NA	18	True	AATAAA	-18	NA	113063987	113105966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_113064508_113066160_113066235_113067375_113067490_113069040_113069171_113069617_113069764_113072002_113072132_113076906_113077034_113078206_113078366_113081027_113081194_113081603_113081728_113083296_113083909_113084745_113084890_113089336_113089514_113090207_113090349_113091681_113091827_113091933_113092052_113092915_113093001_113095446_113095536_113096652_113096782_113096856_113096933_113097594_113097820_113099267_113099405_113099796_113099891_113100980_113101275_113101748_113101881_113103069_113103167_113105668
transcript_26294.nic	chr13	+	932	5	ISM	ENSMUSG00000042426.7	ENSMUST00000224176.2	1272	8	52	8500	52	1052	5prime_fragment	FALSE	canonical	3	291	junction_2	20.0499376557634	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAATTTTTTAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	113064039	113069763	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_+_113064508_113066160_113066235_113067375_113067490_113069040_113069171_113069617
transcript_26296.known	chr13	+	1736	3	FSM	ENSMUSG00000042426.7	ENSMUST00000223866.2	1736	3	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_2	16	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAATTTA	NA	False	NA	NA	False	NA	NA	NA	113064181	113068711	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_113064508_113066160_113066235_113067375
transcript_26297.known	chr13	+	1875	3	FSM	ENSMUSG00000042417.6	ENSMUST00000038404.6	1875	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCCTGTGTGCGACAATTA	NA	False	NA	NA	False	AATAAA	-20	NA	113124335	113127311	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_113124819_113125424_113125611_113126105
transcript_26299.nnic	chr13	-	957	3	NNC	ENSMUSG00000021760.6	novel	1042	3	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	10.5	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCATTTTTTTTTCTTTTC	NA	False	NA	NA	False	AATAAA	-29	NA	113182956	113179286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_113179834_113182068_113182228_113182705
transcript_26300.known	chr13	-	1042	3	FSM	ENSMUSG00000021760.6	ENSMUST00000022282.6	1042	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	4	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAAGTGCATTTTTTTTT	NA	False	NA	NA	False	AATAAA	-23	NA	113182944	113179292	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_113179834_113181965_113182228_113182705
transcript_26301.known	chr13	-	769	2	FSM	ENSMUSG00000021760.6	ENSMUST00000231962.2	769	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCATTTTTTTTTCTTTTC	NA	False	NA	NA	False	AATAAA	-29	NA	113182927	113179286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_113179834_113182705
transcript_26302.known	chr13	+	8274	10	FSM	ENSMUSG00000021763.18	ENSMUST00000136755.10	8274	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_9	5.32870169256969	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTCTCTGTCATTTGTT	NA	False	NA	NA	False	NA	NA	NA	113429692	113507049	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_113429869_113453617_113453782_113454198_113457754_113459268_113459740_113464108_113464286_113478903_113479103_113483044_113483177_113488130_113488301_113502617_113502802_113504003
transcript_26303.known	chr13	-	781	1	FSM	ENSMUSG00000051456.5	ENSMUST00000054650.5	781	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTATGTGGAGGTTGTC	NA	False	NA	NA	False	ATTAAA	-24	NA	113800212	113799431	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_113799400_113800200
transcript_26306.known	chr13	+	3364	5	FSM	ENSMUSG00000042348.11	ENSMUST00000091201.7	3364	5	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_1	23.636571240347	157	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTCCTGACTGACTTTTT	NA	False	NA	17	True	AATAAA	-17	NA	113931040	114293997	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_113931233_114058782_114058928_114070599_114070660_114104117_114104327_114291239
transcript_26309.known	chr13	-	686	6	FSM	ENSMUSG00000021764.9	ENSMUST00000225707.2	686	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	793.529986830996	958	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACACTTGGCAGTTTCTA	NA	False	NA	-18	True	AATAAA	-19	NA	114524585	114425183	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_114425403_114444352_114444427_114453392_114453566_114487983_114488063_114523943_114523994_114524494
transcript_26320.known	chr13	-	873	2	FSM	ENSMUSG00000021764.9	ENSMUST00000225978.3	873	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGCTTAGTTTTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	114524589	114497303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_114498082_114524494
transcript_26321.known	chr13	-	571	4	FSM	ENSMUSG00000021764.9	ENSMUST00000225035.2	571	4	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_3	707.770364517256	2078	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACACTTGGCAGTTTCTA	NA	False	NA	-18	True	AATAAA	-19	NA	114524599	114425183	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_114425403_114444352_114444427_114453392_114453566_114524494
transcript_26322.known	chr13	-	1698	5	FSM	ENSMUSG00000021764.9	ENSMUST00000022286.8	1698	5	0	0	0	0	multi-exon	FALSE	canonical	3	1521	junction_3	83.4187478927849	11503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTGCTGTTATGTTTTTA	NA	False	NA	NA	False	AATAAA	-23	NA	114524794	114424330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_114425403_114444352_114444427_114453392_114453566_114487983_114488063_114524494
transcript_26325.nic	chr13	+	1135	7	NIC	ENSMUSG00000015536.15	novel	1193	7	NA	NA	-32	0	combination_of_known_junctions	TRUE	canonical	2	8	junction_5	58.0672502840935	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATCCTGTCTCCTTTTTA	NA	False	NA	NA	False	AATAAA	-24	NA	114954739	114965265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_114954860_114955871_114955994_114957337_114957483_114961102_114961231_114961746_114961802_114962693_114962818_114964824
transcript_26327.known	chr13	+	1152	7	FSM	ENSMUSG00000015536.15	ENSMUST00000015680.11	1152	7	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_2	16.9844700306551	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATAGATCCTGTCTCC	NA	False	NA	NA	False	AATAAA	-18	NA	114954812	114965259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_114954860_114955871_114955994_114957337_114957483_114961102_114961231_114961746_114961898_114962693_114962818_114964824
transcript_26328.known	chr13	+	1074	7	FSM	ENSMUSG00000015536.15	ENSMUST00000183407.2	1074	7	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_5	59.1373166640339	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAGTCTAAAAATAGATC	NA	False	NA	NA	False	AATAAA	-10	NA	114954835	114965251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_114954860_114955871_114955994_114957337_114957483_114961102_114961231_114961746_114961898_114962740_114962818_114964824
transcript_26335.known	chr13	+	745	6	FSM	ENSMUSG00000015536.15	ENSMUST00000164737.8	745	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	76.0121042992496	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGCTCGCAGTGCGCTGC	NA	False	NA	NA	False	AATAGA	-30	NA	114954822	114965080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_114954860_114957337_114957483_114961102_114961231_114961746_114961802_114962693_114962818_114964824
transcript_26336.known	chr13	+	1855	6	FSM	ENSMUSG00000015536.15	ENSMUST00000166176.9	1855	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	59.3450924677011	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGAAAGGATTTTCTCTT	NA	False	NA	NA	False	AATAAA	-20	NA	114954794	114966066	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_114954860_114957337_114957483_114961102_114961231_114961746_114961898_114962693_114962818_114964824
transcript_26339.known	chr13	+	2116	5	FSM	ENSMUSG00000015536.15	ENSMUST00000170985.8	2116	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	65.157501486782	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAAGCATCCAGTTTTTGA	NA	False	NA	NA	False	ATTAAA	-20	NA	114954805	114965542	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_114954860_114957337_114957483_114961102_114961231_114961746_114962818_114964824
transcript_26340.known	chr13	+	733	5	FSM	ENSMUSG00000015536.15	ENSMUST00000184046.8	733	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	79.8044484975618	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTACATAATGTAAAAGTG	NA	False	NA	NA	False	NA	NA	NA	114954805	114965210	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_114954860_114957337_114957483_114961746_114961771_114962693_114962818_114964824
transcript_26343.known	chr13	-	1600	2	FSM	ENSMUSG00000042275.10	ENSMUST00000109226.5	1600	2	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	0	182	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTCTAGTTCGAGTTAC	NA	False	NA	-1	True	AATAAA	-22	NA	115226722	115224890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_115225498_115225729
transcript_26344.known	chr13	+	354	1	FSM	ENSMUSG00000061669.7	ENSMUST00000081679.7	354	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	153	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGCACATTTTTTAAGTA	NA	False	NA	NA	False	NA	NA	NA	116290316	116290670	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_116290300_116290700
transcript_26345.known	chr13	-	2516	6	FSM	ENSMUSG00000042258.14	ENSMUST00000036060.13	2516	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0.4	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAACGCAATGATTCAG	NA	False	NA	NA	False	AATAAA	-19	NA	116446225	116434816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_116436133_116438146_116438315_116439581_116439869_116441753_116442014_116444809_116445000_116445930
transcript_26346.known	chr13	-	2965	26	FSM	ENSMUSG00000021725.10	ENSMUST00000223949.2	2965	26	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.530659966456864	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTTTGTGCTGATATTTT	NA	False	NA	NA	False	AATAAA	-14	NA	117161931	116991448	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_116991829_116998745_116998831_116999610_116999681_117000721_117000796_117003571_117003642_117004661_117004735_117004975_117005089_117005958_117006008_117008178_117008247_117013066_117013133_117014026_117014153_117015530_117015624_117029535_117029632_117029732_117029784_117031171_117031731_117032191_117032318_117039325_117039393_117047400_117047492_117047919_117047981_117059105_117059201_117061501_117061580_117063052_117063124_117063837_117063928_117075279_117075318_117160710_117160766_117161711
transcript_26349.known	chr13	+	2923	9	FSM	ENSMUSG00000021728.9	ENSMUST00000022242.9	2923	9	0	0	0	0	multi-exon	FALSE	canonical	3	356	junction_8	42.5617198900608	625	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTCCTTACTGTTGTCTG	NA	False	NA	NA	False	AATACA	-17	NA	117356807	117410951	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_117357494_117369262_117369353_117385807_117386001_117386236_117386323_117400930_117401059_117403855_117404136_117405465_117405500_117408580_117408636_117409580
transcript_26359.known	chr13	+	996	2	FSM	ENSMUSG00000021728.9	ENSMUST00000224821.2	996	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	916	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-16	NA	117357273	117366653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_117357494_117365877
transcript_26360.known	chr13	+	753	2	FSM	ENSMUSG00000021728.9	ENSMUST00000225460.2	753	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATCATCTGCATGTTTGGT	NA	False	NA	NA	False	ATTAAA	-16	NA	117357279	117362606	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_117357494_117362067
transcript_26361.known	chr13	+	4114	3	FSM	ENSMUSG00000021732.15	ENSMUST00000022246.9	4114	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	4	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGTACTGTTCTTATTT	NA	False	NA	NA	False	AATAAA	-28	NA	118851234	118928651	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_118852248_118918041_118918146_118925654
transcript_26366.nnic	chr13	-	590	3	NNC	ENSMUSG00000114736.2	novel	356	3	NA	NA	-15480	224	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCACCATGGTGGAGAGGGC	NA	False	NA	NA	False	AATAAA	-20	NA	119431561	119407930	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_119408237_119415138_119415302_119431440
transcript_26367.nnic	chr13	-	366	3	NNC	ENSMUSG00000114736.2	novel	356	3	NA	NA	-15480	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCAGAAGTTAATGAACATA	NA	False	NA	NA	False	NA	NA	NA	119431561	119408154	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_-_119408237_119415138_119415302_119431440
transcript_2637.known	chr1	+	2859	9	FSM	ENSMUSG00000026179.15	ENSMUST00000087225.6	2859	9	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	11.428445869846	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGGTCTGAGCTCTCAAT	9363	False	NA	5	True	NA	NA	NA	74371768	74392845	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_74371951_74386543_74386660_74386810_74386924_74387921_74387981_74388466_74388560_74388872_74389037_74389775_74389863_74390695_74390812_74390916
transcript_26374.known	chr13	-	2340	5	FSM	ENSMUSG00000025453.19	ENSMUST00000133627.8	2340	5	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_4	23.8012604708238	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAGAAAAAAACAAAACC	NA	False	NA	NA	False	NA	NA	NA	119545533	119524223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_119525818_119531146_119531365_119533282_119533513_119541087_119541291_119545438
transcript_26375.known	chr13	-	1885	4	FSM	ENSMUSG00000025453.19	ENSMUST00000144599.2	1885	4	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_3	27.3536509852382	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATTCGTTGAGACTTT	NA	False	NA	NA	False	AATAAA	-14	NA	119545533	119530007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_119531365_119533282_119533513_119541087_119541291_119545438
transcript_26380.known	chr13	+	1525	11	FSM	ENSMUSG00000025451.16	ENSMUST00000109203.9	1525	11	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	94.7694043454954	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCTAGCTGGTTAGATG	NA	False	NA	109	True	AATAAA	-36	NA	119565136	119593927	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_119565177_119566695_119566866_119574504_119574691_119577294_119577408_119582272_119582385_119584250_119584377_119586439_119586547_119587231_119587350_119588327_119588383_119592231_119592326_119593523
transcript_26383.known	chr13	+	2551	11	FSM	ENSMUSG00000025451.16	ENSMUST00000026520.14	2551	11	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	70.3985795311241	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTATCTTAAAGAATTTTT	NA	False	NA	46	True	AATAAA	-31	NA	119565457	119594754	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_119565697_119566695_119566866_119574504_119574691_119577294_119577408_119582272_119582385_119584250_119584377_119586439_119586547_119587231_119587350_119588327_119588383_119592231_119592326_119593523
transcript_26387.known	chr13	+	2627	14	FSM	ENSMUSG00000062822.9	ENSMUST00000225186.2	2627	14	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	45.7272593593877	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTTCATTTCTTACATCA	NA	False	NA	12	True	AATAAA	-22	NA	119599307	119622656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_119599656_119601100_119601227_119602609_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610493_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
transcript_26388.known	chr13	+	2565	13	FSM	ENSMUSG00000062822.9	ENSMUST00000026519.10	2565	13	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	23.5189049253763	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCATTTCTTACA	NA	False	NA	9	True	AATAAA	-19	NA	119599303	119622653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_119599656_119602546_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610493_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
transcript_26389.known	chr13	+	2795	13	FSM	ENSMUSG00000062822.9	ENSMUST00000225726.2	2795	13	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	37.4584955502605	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCATTTCTTACA	NA	False	NA	9	True	AATAAA	-19	NA	119599311	119622653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_119599656_119602546_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610731_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
transcript_26391.nic	chr13	+	2506	13	NIC	ENSMUSG00000062822.9	novel	2565	13	NA	NA	-4	0	combination_of_known_junctions	TRUE	canonical	3	42	junction_1	29.2546292633035	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCATTTCTTACA	NA	False	NA	9	True	AATAAA	-19	NA	119599299	119622653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr13_+_119599656_119602609_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610493_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
transcript_26400.nic	chr13	+	1014	4	ISM	ENSMUSG00000062822.9	ENSMUST00000026519.10	2565	13	-26	16351	-26	-59	5prime_fragment	FALSE	canonical	3	76	junction_1	22.7596133534821	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGCAGATGTGGAAATTT	NA	False	NA	10	True	AATAAA	-22	NA	119599277	119606302	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_+_119599656_119602546_119602841_119603402_119603493_119606050
transcript_26401.nic	chr13	+	1073	4	ISM	ENSMUSG00000062822.9	ENSMUST00000026519.10	2565	13	-26	16292	-26	0	5prime_fragment	FALSE	canonical	3	76	junction_1	22.7596133534821	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACCAGATCTTGAAATCTA	NA	False	NA	-1	True	AATAAA	-15	NA	119599277	119606361	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_+_119599656_119602546_119602841_119603402_119603493_119606050
transcript_26402.known	chr13	+	978	4	FSM	ENSMUSG00000062822.9	ENSMUST00000224081.2	978	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	38.4389848403357	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACCAGATCTTGAAATCTA	NA	False	NA	-1	True	AATAAA	-15	NA	119599309	119606361	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_119599656_119602609_119602841_119603402_119603493_119606050
transcript_26405.known	chr13	+	1563	1	FSM	ENSMUSG00000062822.9	ENSMUST00000225292.2	1563	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	224	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAATAAAAAAAAAGATG	NA	False	NA	NA	False	NA	NA	NA	119599311	119600874	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_119599300_119600900
transcript_26406.known	chr13	+	1648	2	FSM	ENSMUSG00000074634.13	ENSMUST00000178948.2	1648	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTGCTGTTTCTTTTGTT	NA	False	NA	NA	False	AATAAA	-32	NA	120068185	120071994	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_120068567_120070727
transcript_26407.nnic	chr13	+	893	2	NNC	ENSMUSG00000074634.13	novel	880	3	NA	NA	-782	-7064	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_1	0	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTGCGGCCGAGGGGCGG	NA	False	NA	NA	False	NA	NA	NA	119623792	119624942	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr13_+_119624152_119624408
transcript_26409.known	chr13	+	3464	11	FSM	ENSMUSG00000093930.3	ENSMUST00000224188.2	3464	11	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_1	180.959553491934	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGTTATGCCTGTTAAT	NA	False	NA	NA	False	AATAAA	-15	NA	120151999	120169796	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_120152050_120156524_120156584_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924
transcript_26410.known	chr13	+	3245	10	FSM	ENSMUSG00000093930.3	ENSMUST00000179869.3	3245	10	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_1	79.8526420630178	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGCTCTTTGAGTGTTT	NA	False	NA	15	True	AATAAA	-15	NA	120151981	120169618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_120152050_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924
transcript_26411.known	chr13	-	4103	4	FSM	ENSMUSG00000095930.2	ENSMUST00000178142.2	4103	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	3.55902608401044	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCCTTGTGGTTCTGTTT	NA	False	NA	NA	False	GATAAA	-11	NA	120217418	120171629	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_120174332_120175643_120175913_120189115_120190060_120217230
transcript_26413.known	chr13	-	2966	8	FSM	ENSMUSG00000094870.9	ENSMUST00000178271.3	2966	8	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_7	48.3110668861025	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTATGTGTATGGGTGTT	NA	False	NA	76	True	AGTAAA	-18	NA	120252342	120226722	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_120228563_120230241_120230373_120237302_120237526_120237627_120237986_120244307_120244453_120250395_120250498_120251684_120251824_120252314
transcript_26417.known	chr13	-	3067	7	FSM	ENSMUSG00000094870.9	ENSMUST00000177916.8	3067	7	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_6	50.5426112854842	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTATGTGTATGGGTGTT	NA	False	NA	76	True	AGTAAA	-18	NA	120252341	120226722	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_120228563_120230241_120230373_120237302_120237986_120244307_120244453_120250395_120250498_120251684_120251824_120252314
transcript_26420.nic	chr13	-	728	5	ISM	ENSMUSG00000094870.9	ENSMUST00000178271.3	2966	8	-248	11197	-165	-75	5prime_fragment	FALSE	canonical	3	32	junction_4	53.3479146733966	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTGCAGAAACTTCAAATG	NA	False	NA	NA	False	AAAAAG	-4	NA	120252590	120237919	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_120237986_120244307_120244453_120250395_120250498_120251684_120251824_120252314
transcript_26421.nic	chr13	-	755	5	ISM	ENSMUSG00000094870.9	ENSMUST00000223722.2	3109	7	-233	11196	-233	-75	5prime_fragment	FALSE	canonical	3	13	junction_4	61.5441914399726	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTGCAGAAACTTCAAATG	NA	False	NA	NA	False	AAAAAG	-4	NA	120252658	120237919	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr13_-_120237986_120244307_120244453_120250395_120250498_120251684_120251824_120252355
transcript_26425.known	chr13	+	894	2	FSM	ENSMUSG00000095653.3	ENSMUST00000225144.2	894	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATTTGTGTTCTTCTTAT	NA	False	NA	NA	False	AATAAA	-16	NA	120633968	120635424	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_120634130_120634691
transcript_26426.known	chr13	-	830	2	FSM	ENSMUSG00000094027.3	ENSMUST00000225881.2	830	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTGTTCTCTTGTAAT	NA	False	NA	NA	False	AATAAA	-16	NA	120677483	120676128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_120676775_120677299
transcript_26427.known	chr13	+	886	2	FSM	ENSMUSG00000063846.9	ENSMUST00000223770.2	886	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAAATTTGTGTTCTTCT	NA	False	NA	NA	False	AATAAA	-15	NA	120700646	120702903	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_120700805_120702175
transcript_26429.known	chr13	-	472	1	FSM	ENSMUSG00000078180.5	ENSMUST00000078729.9	472	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	657	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGTCCAGATGGCTAAT	NA	False	NA	NA	False	NA	NA	NA	120766201	120765729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_-_120765700_120766200
transcript_26430.known	chr13	+	779	2	FSM	ENSMUSG00000095821.3	ENSMUST00000223967.2	779	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTGTCTTTTCAGCCATC	NA	False	NA	NA	False	NA	NA	NA	120778413	120779714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr13_+_120778553_120779074
transcript_26432.known	chr14	+	1523	6	FSM	ENSMUSG00000058317.13	ENSMUST00000150727.8	1523	6	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	30.1569229199532	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTTCTGTACCAGCCTTT	NA	False	NA	7	True	AATAAA	-19	NA	3575919	3896119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_3576112_3581246_3581431_3598151_3598203_3839264_3839398_3882697_3882846_3895304
transcript_26435.known	chr14	+	550	6	FSM	ENSMUSG00000021774.14	ENSMUST00000225612.2	550	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	122.433002086856	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTGGACCAAGAGATACGC	NA	False	NA	NA	False	NA	NA	NA	4137951	4186327	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_4138010_4138657_4138747_4143265_4143317_4184427_4184561_4185274_4185423_4186256
transcript_26441.known	chr14	+	505	4	FSM	ENSMUSG00000012405.17	ENSMUST00000147121.2	505	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	6685.29522326593	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATTGTGGGGCTTTGAGA	NA	False	NA	NA	False	NA	NA	NA	4198304	4200392	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_4198478_4199235_4199418_4199652_4199790_4200379
transcript_26444.known	chr14	+	802	4	FSM	ENSMUSG00000012405.17	ENSMUST00000100799.9	802	4	0	0	0	0	multi-exon	FALSE	canonical	3	877	junction_1	6301.70655898508	20768	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGCTTAAAGGTGTTAT	NA	False	NA	2	True	AATAAA	-17	NA	4198725	4200736	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_4198852_4199235_4199418_4199652_4199790_4200379
transcript_26449.known	chr14	-	619	4	FSM	ENSMUSG00000021772.16	ENSMUST00000133460.2	619	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	47.8493004709113	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGTGGGAGGTGACAGT	NA	False	NA	NA	False	NA	NA	NA	4198510	4189653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_4189750_4191150_4191393_4192727_4192871_4198372
transcript_2645.known	chr1	+	740	3	FSM	ENSMUSG00000026179.15	ENSMUST00000113805.8	740	3	0	0	0	0	multi-exon	FALSE	canonical	3	1381	junction_1	89	6654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGCCAGGTTGAATTTGT	NA	False	NA	6	True	AATAAA	-24	NA	74324088	74326613	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_74324297_74325000_74325170_74326250
transcript_26453.known	chr14	+	883	4	FSM	ENSMUSG00000012405.17	ENSMUST00000079419.12	883	4	0	0	0	0	multi-exon	FALSE	canonical	3	1636	junction_1	5972.09066315046	29082	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGCTTAAAGGTGTTAT	NA	False	NA	2	True	AATAAA	-17	NA	4198666	4200736	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_4198874_4199235_4199418_4199652_4199790_4200379
transcript_26454.known	chr14	+	1408	6	FSM	ENSMUSG00000021774.14	ENSMUST00000022296.7	1408	6	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_1	27.2073519475895	3372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTGCTGTGTTCATTTC	NA	False	NA	24	True	AATAAA	-21	NA	4137836	4186974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_4138010_4138561_4138747_4143265_4143317_4184427_4184561_4185274_4185423_4186256
transcript_26455.known	chr14	+	1922	4	FSM	ENSMUSG00000012405.17	ENSMUST00000080281.14	1922	4	0	0	0	0	multi-exon	FALSE	canonical	3	8735	junction_1	3197.35060462391	79543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGTTATCTTTTATGTT	NA	False	NA	NA	False	AATAAA	-18	NA	4198628	4201873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_4198738_4199235_4199418_4199652_4199790_4200379
transcript_26456.known	chr14	-	1199	5	FSM	ENSMUSG00000021772.16	ENSMUST00000022294.15	1199	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	46.4885738649832	560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATACCATGGGAACTCTT	NA	False	NA	-39	True	AATAAA	-14	NA	4198469	4189258	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_4189750_4191150_4191393_4191594_4191853_4192889_4193001_4198372
transcript_26457.known	chr14	-	747	2	FSM	ENSMUSG00000021772.16	ENSMUST00000152735.2	747	2	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTTGCTACAGTATGACC	NA	False	NA	NA	False	CATAAA	-38	NA	4198492	4192373	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_4193001_4198372
transcript_26458.known	chr14	+	802	3	FSM	ENSMUSG00000012405.17	ENSMUST00000112598.9	802	3	0	0	0	0	multi-exon	FALSE	canonical	3	10327	junction_1	2922.5	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGTAAAATTCATATCCAA	NA	False	NA	-38	True	AATACA	-8	NA	4199069	4200696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_4199418_4199652_4199790_4200379
transcript_26459.known	chr14	+	565	2	FSM	ENSMUSG00000012405.17	ENSMUST00000224196.2	565	2	0	0	0	0	multi-exon	FALSE	canonical	3	16172	junction_1	0	4437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCATTTCTGCTTAAAGGT	NA	False	NA	-3	True	AATAAA	-12	NA	4199576	4200731	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_4199790_4200379
transcript_2646.known	chr1	+	2937	10	FSM	ENSMUSG00000026179.15	ENSMUST00000027370.13	2937	10	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	408.826988068106	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAAGGTCTGAGCTCTCA	NA	False	NA	3	True	NA	NA	NA	74324203	74392843	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_74324297_74325000_74325170_74386543_74386660_74386810_74386924_74387921_74387981_74388466_74388560_74388872_74389037_74389775_74389863_74390695_74390812_74390916
transcript_26460.known	chr14	+	4663	8	FSM	ENSMUSG00000021775.12	ENSMUST00000090543.6	4663	8	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_5	14.9229312653721	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTATTGTTTTGTTCTCTG	NA	False	NA	28	True	TATAAA	-18	NA	4230568	4265642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_4230886_4247442_4247710_4249639_4249729_4252901_4253047_4254202_4254823_4257731_4257918_4261566_4261778_4262814
transcript_26461.known	chr14	-	2935	12	FSM	ENSMUSG00000021785.9	ENSMUST00000022310.7	2935	12	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_2	12.9506373690434	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAGAGTGAAAGAGTAGCA	NA	False	NA	NA	False	AATAAA	-14	NA	6220483	6157836	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_6158905_6159271_6159450_6175089_6175276_6178827_6178993_6186289_6186401_6187877_6188024_6188948_6189071_6191741_6191965_6199122_6199289_6208962_6209200_6215006_6215122_6220265
transcript_26464.nic	chr14	-	1075	4	ISM	ENSMUSG00000021785.9	ENSMUST00000153109.2	3296	5	-41	12314	6	0	5prime_fragment	FALSE	canonical	3	70	junction_2	8.52447456836295	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTCTACTCTCTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	6220477	6198777	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_6199289_6208962_6209200_6215006_6215122_6220265
transcript_26465.known	chr14	+	1586	3	FSM	ENSMUSG00000021786.14	ENSMUST00000112624.3	1586	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	10	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTACTTGTTATTTTATAG	NA	False	NA	NA	False	NA	NA	NA	6220588	6229217	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_6220642_6226964_6227973_6228692
transcript_26466.known	chr14	+	3434	3	FSM	ENSMUSG00000021786.14	ENSMUST00000112625.9	3434	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	6.5	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAAAAATGTTGTAAGA	NA	False	NA	NA	False	TATAAA	-3	NA	6226431	6231076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_6226474_6226964_6227973_6228692
transcript_26468.known	chr14	-	8132	25	FSM	ENSMUSG00000021733.12	ENSMUST00000057015.8	8132	25	0	0	0	0	multi-exon	TRUE	canonical	3	66	junction_19	12.4782449576141	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGCCTTGGCTGTTGTTTTT	NA	False	NA	-5	True	AATAAA	-14	NA	7767484	7669822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_7673687_7675705_7675814_7678598_7678697_7683339_7683472_7687540_7687715_7690868_7690938_7694334_7694587_7694710_7694873_7696412_7696527_7697065_7697228_7698448_7698555_7702777_7703024_7704052_7704187_7707240_7707416_7709421_7709529_7712331_7712479_7719240_7719329_7721139_7721298_7723679_7723796_7729849_7730039_7731418_7731580_7732255_7732395_7735894_7736042_7740479_7740562_7766482
transcript_2647.known	chr1	+	2315	15	FSM	ENSMUSG00000026177.12	ENSMUST00000027368.6	2315	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	14.5525087254426	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAAAGAGTTCTAGGTTA	4971	False	NA	NA	False	NA	NA	NA	74414361	74425221	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_74414481_74414876_74415011_74415951_74416075_74416315_74416436_74418941_74419049_74419355_74419427_74419767_74419836_74420000_74420157_74420894_74421054_74422596_74422687_74422783_74422904_74423182_74423333_74423855_74423930_74424299_74424454_74424551
transcript_26475.known	chr14	-	1614	12	FSM	ENSMUSG00000068758.9	ENSMUST00000090591.4	1614	12	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_11	9.46153587727832	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTTCCTGTGCTGCTATC	NA	False	NA	-2	True	AATAAA	-16	NA	8123488	8114272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_8114394_8114689_8114757_8117743_8117847_8118598_8118714_8118795_8118826_8118956_8119076_8119495_8119729_8120390_8120521_8120818_8120943_8121694_8121850_8122574_8122754_8123250
transcript_26478.nnic	chr14	-	1328	11	NIC	ENSMUSG00000068758.9	novel	1614	12	NA	NA	-33	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	9.8974744253269	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGTGCTGCTATCAGT	NA	False	NA	1	True	AATAAA	-19	NA	8123378	8114269	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_-_8114394_8114689_8114757_8117743_8117847_8118598_8118714_8118795_8118826_8118956_8119076_8119495_8119729_8120390_8120521_8120818_8120943_8121694_8121850_8123250
transcript_26481.nic	chr14	-	1172	10	NIC	ENSMUSG00000068758.9	novel	1614	12	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_9	9.28692164176305	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGTGCTGCTATCAGT	NA	False	NA	1	True	AATAAA	-19	NA	8123377	8114269	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_-_8114394_8114689_8114757_8117743_8117847_8118598_8118714_8118795_8118826_8118956_8119076_8119495_8119729_8120390_8120521_8120818_8120943_8123250
transcript_26491.nnic	chr14	-	745	6	NIC	ENSMUSG00000068758.9	novel	1128	10	NA	NA	341	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_5	12.5793481548131	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGTGCTGCTATCAGT	NA	False	NA	1	True	AATAAA	-19	NA	8119801	8114269	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_-_8114394_8114689_8114757_8117743_8117847_8118598_8118714_8118795_8118826_8119495
transcript_26497.nnic	chr14	-	600	4	NIC	ENSMUSG00000068758.9	novel	1128	10	NA	NA	341	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_3	13.2748718344933	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGTGCTGCTATCAGT	NA	False	NA	1	True	AATAAA	-19	NA	8119801	8114269	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_-_8114394_8114689_8114757_8117743_8117847_8119495
transcript_26498.known	chr14	+	1104	3	FSM	ENSMUSG00000114883.2	ENSMUST00000224991.2	1104	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0.5	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCTTTCTTGGTATTTTT	4282	False	NA	NA	False	AATAAA	-16	NA	8122498	8141759	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_8122621_8140289_8140478_8140965
transcript_26501.nnic	chr14	-	485	3	NIC	ENSMUSG00000068758.9	novel	1128	10	NA	NA	353	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	17.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGTGCTGCTATCAGT	NA	False	NA	1	True	AATAAA	-19	NA	8119789	8114269	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_-_8114394_8114689_8114757_8119495
transcript_26506.known	chr14	+	1387	8	FSM	ENSMUSG00000021737.5	ENSMUST00000022256.5	1387	8	0	0	0	0	multi-exon	FALSE	canonical	3	1151	junction_1	36.7689975886408	8948	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTTCTTAAACATACA	NA	False	NA	25	True	AATAAA	-27	NA	8348778	8357589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_8349025_8349570_8349777_8352792_8352939_8353159_8353380_8353506_8353616_8355471_8355641_8357159_8357238_8357376
transcript_2651.nnic	chr1	+	1028	4	NIC	ENSMUSG00000026177.12	novel	2315	15	NA	NA	15	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	19.8158185969358	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAAAGAGTTCTAGGTTA	4336	False	NA	NA	False	NA	NA	NA	74422773	74425221	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_74422904_74423855_74423930_74424299_74424454_74424551
transcript_26514.known	chr14	+	765	8	FSM	ENSMUSG00000053453.10	ENSMUST00000225325.2	765	8	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	244.554071480217	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAAGTATTCATGTGTCGT	NA	False	NA	NA	False	NA	NA	NA	8507910	8520613	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_8507970_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
transcript_26524.known	chr14	+	937	8	FSM	ENSMUSG00000053453.10	ENSMUST00000065865.10	937	8	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_1	118.776758531907	4995	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTGTGCTCATTCAAAAC	NA	False	NA	22	True	AATAAA	-16	NA	8508485	8520751	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_8508579_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
transcript_26525.known	chr14	+	706	5	FSM	ENSMUSG00000053453.10	ENSMUST00000225317.2	706	5	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_1	153.04309033733	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATCTTTAAAACCACTGAA	NA	False	NA	NA	False	AATAAA	-16	NA	8508528	8518822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_8508579_8515106_8515225_8516224_8516353_8516600_8516688_8518499
transcript_26526.known	chr14	+	741	8	FSM	ENSMUSG00000053453.10	ENSMUST00000225202.2	741	8	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	284.788500111782	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTCCAAAGTTACTGCCTA	NA	False	NA	NA	False	NA	NA	NA	8508550	8519644	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_8508579_8512131_8512304_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561
transcript_26527.known	chr14	+	844	9	FSM	ENSMUSG00000053453.10	ENSMUST00000224015.2	844	9	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	279.504472236134	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGAACGGAAATGTATCCC	NA	False	NA	-84	True	NA	NA	NA	8508550	8520645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_8508579_8512131_8512210_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
transcript_2653.known	chr1	+	2876	7	FSM	ENSMUSG00000026176.14	ENSMUST00000027367.14	2876	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	3.53160335006952	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTGCCCCCACCTCTGGAA	3310	False	NA	NA	False	AATAAA	-17	NA	74430667	74436444	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_74431124_74432436_74432586_74432955_74433061_74433177_74433235_74433798_74433892_74433995_74434182_74434614
transcript_26541.nic	chr14	-	996	7	NIC	ENSMUSG00000033111.17	novel	900	6	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	67.1501220318243	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCACGGCCCTCTTGAGTC	NA	False	NA	-10	True	AATAAA	-16	NA	10185550	10167785	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_-_10168192_10168274_10168365_10168516_10168616_10172106_10172182_10182369_10182494_10184294_10184376_10185429
transcript_26543.nic	chr14	-	979	7	NIC	ENSMUSG00000033111.17	novel	900	6	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	65.3029265976818	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCACGGCCCTCTTGAGTC	NA	False	NA	-10	True	AATAAA	-16	NA	10185530	10167785	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_-_10168192_10168274_10168365_10168516_10168616_10172106_10172182_10182369_10182494_10184294_10184379_10185429
transcript_26545.nic	chr14	-	971	7	NIC	ENSMUSG00000033111.17	novel	809	6	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	61.1375952712859	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCACGGCCCTCTTGAGTC	NA	False	NA	-10	True	AATAAA	-16	NA	10185598	10167785	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_-_10168192_10168274_10168365_10168516_10168616_10172106_10172182_10182369_10182494_10184294_10184379_10185505
transcript_26548.known	chr14	-	900	6	FSM	ENSMUSG00000033111.17	ENSMUST00000223702.2	900	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	60.3277713826725	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTCTTGAGTCTCCAGTT	NA	False	NA	-3	True	AATAAA	-23	NA	10185528	10167778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_10168192_10168274_10168365_10168516_10168616_10172106_10172182_10182369_10182494_10185429
transcript_26556.known	chr14	-	1010	6	FSM	ENSMUSG00000033111.17	ENSMUST00000223927.2	1010	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	68.9770976484224	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACTCCTCCAAGTCCTTA	NA	False	NA	NA	False	AATAGA	-24	NA	10185509	10168029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_10168616_10169980_10170042_10172106_10172182_10182369_10182494_10184294_10184379_10185429
transcript_26557.known	chr14	-	2477	6	FSM	ENSMUSG00000033111.17	ENSMUST00000112669.10	2477	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	65.4785461048121	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAGAAGGTGTTTAAAGG	NA	False	NA	NA	False	AATAAA	-19	NA	10185554	10166531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_10168616_10169980_10170042_10172106_10172182_10182369_10182494_10184294_10184379_10185505
transcript_26560.known	chr14	-	2444	5	FSM	ENSMUSG00000033111.17	ENSMUST00000224389.2	2444	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	59.4011784394889	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAGAAGGTGTTTAAAGG	NA	False	NA	NA	False	AATAAA	-19	NA	10185509	10166531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_10168616_10172106_10172182_10182369_10182494_10184294_10184376_10185429
transcript_26563.known	chr14	-	1191	5	FSM	ENSMUSG00000033111.17	ENSMUST00000225294.2	1191	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	54.4196655631032	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGGCCCTCTTGAGTCTC	NA	False	NA	-8	True	AATAAA	-18	NA	10185505	10167783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_10168616_10172106_10172182_10182369_10182494_10184294_10184379_10185429
transcript_26564.known	chr14	-	2292	5	FSM	ENSMUSG00000033111.17	ENSMUST00000223762.2	2292	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	58.5683361552981	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCTCAGAAAAAGCTTTGT	NA	False	NA	-8	True	ATTAAA	-45	NA	10185541	10166639	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_10168616_10172106_10172182_10182369_10182494_10184294_10184376_10185505
transcript_26575.known	chr14	-	431	4	FSM	ENSMUSG00000033111.17	ENSMUST00000225383.2	431	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	60.8988231960739	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAAGTTTCATTTTGTTA	NA	False	NA	NA	False	TATAAA	-30	NA	10185536	10168414	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_10168616_10172106_10172182_10182369_10182494_10185505
transcript_26577.known	chr14	-	915	1	FSM	ENSMUSG00000033111.17	ENSMUST00000223697.2	915	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAATTA	NA	False	NA	NA	False	NA	NA	NA	10185462	10184547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_10184500_10185500
transcript_26578.known	chr14	-	462	3	FSM	ENSMUSG00000033111.17	ENSMUST00000225640.2	462	3	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_2	82.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGACTCTTGAAGGTAATTCT	NA	False	NA	NA	False	AAGAAA	-5	NA	10185481	10182381	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_10182494_10184294_10184379_10185215
transcript_26579.known	chr14	-	809	6	FSM	ENSMUSG00000033111.17	ENSMUST00000225971.2	809	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	59.9513135802711	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCACGGCCCTCTTGAGTC	NA	False	NA	-10	True	AATAAA	-16	NA	10185520	10167785	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_10168192_10168274_10168365_10168516_10168616_10172106_10172182_10182369_10182494_10185505
transcript_26581.known	chr14	+	860	7	FSM	ENSMUSG00000060579.14	ENSMUST00000161302.8	860	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	3.53160335006952	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGGTGTTCTGGAAAAC	NA	False	NA	NA	False	AATAAA	-18	NA	12016314	12919681	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_12016405_12048159_12048279_12599597_12599744_12607726_12607757_12705964_12706034_12896261_12896361_12919374
transcript_26596.known	chr14	+	336	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGACAGCAAAAGGAAAAATA	NA	False	NA	NA	False	NA	NA	NA	13669437	13669773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_13669400_13669800
transcript_2660.nic	chr1	-	1721	12	ISM	ENSMUSG00000033364.14	ENSMUST00000191058.7	6011	20	-170	21863	-149	-21863	5prime_fragment	FALSE	canonical	3	147	junction_10	27.6103346323871	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACTACTTAAGAAGGTTAA	NA	False	NA	NA	False	ATTAAA	-31	NA	74545114	74510523	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_74510579_74510713_74510846_74514144_74514304_74517205_74517291_74518810_74518909_74525139_74525215_74525777_74525957_74529248_74529350_74532063_74532236_74534788_74535013_74539114_74539260_74544818
transcript_26600.known	chr14	+	2681	16	FSM	ENSMUSG00000021747.13	ENSMUST00000102996.4	2681	16	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_15	21.4813614300605	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGTGCTTCCTTTTGTTC	NA	False	NA	14	True	AATAAA	-14	NA	13803532	14038581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_13803796_13807424_13807515_13810290_13810385_13825303_13825377_13891310_13891426_13911582_13911740_13933117_13933256_13951006_13951144_13951780_13951935_13953205_13953323_13954397_13954521_13958579_13958912_13987152_13987357_13996360_13996423_14026822_14026918_14038054
transcript_26607.nnic	chr14	+	1042	5	NNC	ENSMUSG00000021747.13	novel	2390	13	NA	NA	-82	-116266	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	77.8118724874296	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTTTTATCACAGCAGT	NA	False	NA	NA	False	NA	NA	NA	13803450	13851086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_13803796_13807424_13807515_13810290_13810385_13825303_13825377_13850646
transcript_26610.nic	chr14	+	1020	4	ISM	ENSMUSG00000021747.13	ENSMUST00000225744.2	2390	13	-83	141558	-82	-141558	5prime_fragment	FALSE	canonical	3	157	junction_2	15.5134350376268	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTTTTAGTCAGTTGAAC	NA	False	NA	NA	False	NA	NA	NA	13803450	13825794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_+_13803796_13807424_13807515_13810290_13810385_13825303
transcript_26611.nic	chr14	+	1198	4	ISM	ENSMUSG00000021747.13	ENSMUST00000225744.2	2390	13	-83	141380	-82	-141380	5prime_fragment	FALSE	canonical	3	157	junction_2	15.5134350376268	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTAGGCATTTGTCTTCCA	NA	False	NA	NA	False	ATTAAA	-18	NA	13803450	13825972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_+_13803796_13807424_13807515_13810290_13810385_13825303
transcript_26612.known	chr14	+	1253	10	FSM	ENSMUSG00000021749.7	ENSMUST00000022269.7	1253	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.816496580927726	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCATCTCTCCCATTGCTG	NA	False	NA	NA	False	ATTAAA	-27	NA	14091018	14120836	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_14091217_14102683_14102740_14104876_14104985_14108276_14108298_14111317_14111436_14112604_14112664_14114258_14114310_14115839_14115925_14117564_14117692_14120406
transcript_26615.known	chr14	-	1650	3	FSM	ENSMUSG00000021752.15	ENSMUST00000022272.14	1650	3	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_1	7.5	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAAAGGTTGTATTTATT	NA	False	NA	NA	False	AATAAA	-15	NA	14255633	14246209	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_14247587_14249552_14249623_14255430
transcript_2662.known	chr1	-	7111	24	FSM	ENSMUSG00000033364.14	ENSMUST00000044260.11	7111	24	0	0	0	0	multi-exon	TRUE	canonical	3	36	junction_8	42.9588980155981	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTAGTTTGATTTATTTG	NA	False	NA	-1	True	ATTAAA	-16	NA	74544962	74474669	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_74478638_74479118_74479258_74480690_74480761_74483571_74483688_74489653_74489715_74491845_74492013_74492986_74493243_74495237_74495380_74500724_74500890_74506073_74506154_74507425_74507544_74509695_74509887_74510454_74510579_74510713_74510846_74514144_74514304_74517205_74517291_74518810_74518909_74525139_74525215_74525777_74525957_74529248_74529350_74532063_74532236_74534788_74535013_74539114_74539260_74544818
transcript_26621.known	chr14	+	2377	1	FSM	ENSMUSG00000021748.10	ENSMUST00000225735.2	2377	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAAGGAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	14296810	14299187	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_14296800_14299200
transcript_26622.known	chr14	+	1513	10	FSM	ENSMUSG00000021748.10	ENSMUST00000022268.10	1513	10	0	0	0	0	multi-exon	FALSE	canonical	3	2290	junction_6	170.664134819183	12711	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTCTTGGAGTACTATT	NA	False	NA	NA	False	AATAAA	-16	NA	14296747	14303777	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_14296883_14296955_14297010_14298242_14298351_14298443_14298507_14298597_14298634_14299326_14299613_14299953_14300065_14300336_14300429_14302918_14303061_14303291
transcript_26623.known	chr14	-	2812	18	FSM	ENSMUSG00000033885.16	ENSMUST00000036682.9	2812	18	0	0	0	0	multi-exon	TRUE	canonical	3	68	junction_2	18.5091392369855	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTAGCTTTGCTAGGTA	NA	False	NA	0	True	AATAAA	-17	NA	14371562	14304655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_14305839_14314427_14314488_14317622_14317693_14318191_14318279_14318768_14318847_14321644_14321694_14323500_14323580_14325061_14325180_14325535_14325698_14328228_14328331_14329026_14329132_14331708_14331784_14332353_14332428_14332826_14332905_14338982_14339170_14347380_14347429_14349901_14349953_14371356
transcript_26625.known	chr14	-	2765	18	FSM	ENSMUSG00000033885.16	ENSMUST00000225653.2	2765	18	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	21.2781870861862	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTATGTTGTAGCTTTGC	NA	False	NA	-6	True	AATAAA	-11	NA	14371518	14304661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_14305839_14314427_14314491_14317622_14317693_14318191_14318279_14318768_14318847_14321644_14321694_14323500_14323580_14325061_14325180_14325535_14325698_14328228_14328331_14329026_14329132_14331708_14331784_14332353_14332428_14332826_14332905_14338982_14339170_14347380_14347429_14349901_14349953_14371356
transcript_26632.known	chr14	-	2401	6	FSM	ENSMUSG00000023156.5	ENSMUST00000023924.4	2401	6	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_4	6.88767014308903	605	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTGTGTATATACCTT	NA	False	NA	-15	True	NA	NA	NA	14389406	14377938	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_14379866_14380975_14381055_14382232_14382310_14385771_14385857_14385978_14386066_14389260
transcript_26647.known	chr14	-	477	1	FSM	ENSMUSG00000023156.5	ENSMUST00000180369.2	477	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATACAAATTTAAAGTTATA	NA	False	NA	-30	True	NA	NA	NA	14379695	14379218	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_14379200_14379700
transcript_26648.known	chr14	-	2226	9	FSM	ENSMUSG00000025277.15	ENSMUST00000166497.9	2226	9	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_8	7.63216876123687	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTGGCAACACCCAGGTA	NA	False	NA	NA	False	AATAAA	-13	NA	14466871	14413009	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_14414303_14419864_14419966_14420144_14420200_14424147_14424306_14426946_14427080_14428540_14428655_14429868_14430026_14441383_14441537_14466809
transcript_2665.known	chr1	+	3268	8	FSM	ENSMUSG00000026174.10	ENSMUST00000087215.7	3268	8	0	0	0	0	multi-exon	FALSE	canonical	3	963	junction_5	46.4318680148337	350	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGTTTTGTTTTTAAAT	860	False	NA	38	True	AATAAA	-23	NA	74545216	74570001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_74545621_74556228_74556409_74558059_74558176_74561476_74561587_74562662_74562773_74566150_74566250_74566750_74566843_74567844
transcript_26653.known	chr14	-	1958	8	FSM	ENSMUSG00000025277.15	ENSMUST00000225234.2	1958	8	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_7	23.7589940005541	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCTGTGAATTCAGTGAA	NA	False	NA	NA	False	AGTAAA	-18	NA	14466854	14413107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_14414303_14419864_14419966_14420144_14420200_14424147_14424306_14426946_14427080_14428540_14428655_14429868_14430026_14466809
transcript_26658.known	chr14	-	676	2	FSM	ENSMUSG00000109649.2	ENSMUST00000211339.2	676	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGACTTGGAAAAGGCCTC	NA	False	NA	NA	False	NA	NA	NA	14512485	14509136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_14509256_14511928
transcript_26659.nnic	chr14	-	2287	6	NNC	ENSMUSG00000025278.10	novel	9100	46	NA	NA	52384	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_5	247.863349448845	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCCCTGTCATTCTTGGA	NA	False	NA	NA	False	AATAAA	-17	NA	14532648	14518184	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_14519469_14521125_14521330_14523759_14523979_14527551_14527729_14530593_14530727_14532378
transcript_26661.nnic	chr14	-	2010	5	NNC	ENSMUSG00000025278.10	novel	9100	46	NA	NA	56899	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	276.717703625915	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCCCTGTCATTCTTGGA	NA	False	NA	NA	False	AATAAA	-17	NA	14528133	14518184	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_14519469_14521125_14521330_14523759_14523979_14527551_14527729_14528007
transcript_26663.known	chr14	-	9100	46	FSM	ENSMUSG00000025278.10	ENSMUST00000052678.9	9100	46	0	0	0	0	multi-exon	TRUE	canonical	3	76	junction_16	125.273027256567	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCCCTGTCATTCTTGGA	NA	False	NA	NA	False	AATAAA	-17	NA	14651816	14518184	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_14519469_14521125_14521330_14523759_14523979_14527551_14527729_14530593_14530727_14533723_14533840_14535071_14535210_14535792_14536060_14538626_14538750_14538857_14539011_14539810_14540015_14540613_14540773_14542253_14542428_14543261_14543391_14545459_14545601_14546215_14546319_14547026_14547099_14550415_14550664_14552389_14552580_14553669_14553827_14554388_14554513_14556650_14556819_14560003_14560165_14561088_14561252_14562446_14562621_14563797_14564396_14565048_14565312_14567771_14567890_14573217_14573388_14573592_14573684_14575085_14575247_14575515_14575640_14575885_14576030_14576786_14576901_14577499_14577694_14578906_14579044_14580511_14580639_14582098_14582237_14585025_14585224_14585850_14586014_14587488_14587567_14588071_14588191_14596280_14596429_14599895_14599994_14601987_14602237_14651329
transcript_26673.nnic	chr14	+	1862	5	NNC	ENSMUSG00000079364.4	novel	2055	7	NA	NA	-103	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2.59807621135332	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	7694	False	NA	NA	False	AATAAA	-17	NA	14901103	14924622	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_14901354_14917878_14918042_14918991_14919124_14919799_14919983_14923488
transcript_26683.nnic	chr14	+	1890	6	Fusion	ENSMUSG00000091617.9_ENSMUSG00000091472.3	novel	1817	6	NA	NA	-4886	-53	multi-exon	FALSE	canonical	0	0	junction_2	2.33238075793812	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCT	NA	False	NA	NA	False	AATAAA	-17	NA	14981124	15176072	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr14_+_14981235_14985916_14986068_15170282_15170446_15171398_15171531_15172205_15172389_15174921
transcript_26691.known	chr14	+	984	5	FSM	ENSMUSG00000094021.8	ENSMUST00000169215.8	984	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	8	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTGTCAGAAAACACAGCAG	NA	False	NA	NA	False	AATAAA	-3	NA	15424802	15433238	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_15424996_15425726_15425890_15426844_15426977_15427652_15427837_15432926
transcript_26702.nnic	chr14	+	1566	3	NNC	ENSMUSG00000090691.4	novel	2053	7	NA	NA	-220	-9033	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGACAGAATGTATTGTTC	NA	False	NA	NA	False	AATAAA	-42	NA	15579590	15592238	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_15579954_15584666_15584818_15591186
transcript_26717.nnic	chr14	+	1178	7	Fusion	ENSMUSG00000090643.9_ENSMUSG00000094634.9	novel	1756	5	NA	NA	-39	0	multi-exon	FALSE	canonical	0	0	junction_2	12.953978367882	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAGTGTATGCTTCAGCT	NA	False	NA	NA	False	AATAAA	-17	NA	16361068	16499029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr14_+_16361193_16362573_16362688_16490635_16490771_16491501_16491665_16492619_16492752_16493428_16493613_16498703
transcript_2672.known	chr1	-	510	3	FSM	ENSMUSG00000026135.18	ENSMUST00000147011.3	510	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	14	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCCCACCTCTCTCAAAC	NA	False	NA	NA	False	NA	NA	NA	74627292	74624743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_74624857_74626722_74626911_74627083
transcript_26726.known	chr14	+	1758	5	FSM	ENSMUSG00000090512.9	ENSMUST00000164585.8	1758	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	6.90561365846657	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGCAGTGTATGCTTCAG	NA	False	NA	NA	False	AATAAA	-15	NA	16639443	16647839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_16639581_16640311_16640475_16641429_16641562_16642237_16642422_16646697
transcript_26729.nnic	chr14	+	1292	3	Fusion	ENSMUSG00000094634.9_ENSMUSG00000096629.8	novel	1955	7	NA	NA	-44	-16448	multi-exon	FALSE	canonical	0	0	junction_2	7.5	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAAATGTCCTCATAGTT	NA	False	NA	NA	False	AAGAAA	-9	NA	16361063	16662769	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr14_+_16361193_16362573_16362688_16661720
transcript_2673.known	chr1	-	3876	3	FSM	ENSMUSG00000026135.18	ENSMUST00000136865.8	3876	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	11	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAAGAAGT	NA	False	NA	NA	False	NA	NA	NA	74627354	74621383	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_74624857_74626722_74626911_74627139
transcript_2674.known	chr1	-	3855	2	FSM	ENSMUSG00000026135.18	ENSMUST00000130112.2	3855	2	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	74627111	74621390	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_74624857_74626722
transcript_26745.nnic	chr14	-	2156	8	NNC	ENSMUSG00000094132.8	novel	882	7	NA	NA	-66	1057	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	10.6961751699056	13	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAGTGTATGCTTCAGCT	NA	False	NA	NA	False	AATAAA	-17	NA	17614263	17592864	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_17593998_17596548_17596732_17597407_17597540_17598489_17598653_17599386_17599522_17609286_17609438_17612629_17612744_17614118
transcript_2675.known	chr1	+	1679	8	FSM	ENSMUSG00000026172.13	ENSMUST00000113732.2	1679	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	48.4072856719156	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGGTACCTACAAGATCTA	1216	False	NA	13	True	AATAAA	-14	NA	74627532	74631348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_74627764_74628644_74629038_74629118_74629259_74629423_74629619_74629829_74629894_74630118_74630289_74630747_74630866_74630980
transcript_26758.known	chr14	-	984	5	FSM	ENSMUSG00000091700.8	ENSMUST00000169465.8	984	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	8.92678553567856	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTGTCAGAAAACACAGCAG	NA	False	NA	NA	False	AATAAA	-3	NA	17760535	17752108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_17752421_17757500_17757685_17758360_17758493_17759447_17759611_17760342
transcript_26759.known	chr14	-	997	5	FSM	ENSMUSG00000091148.8	ENSMUST00000169364.8	997	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	9.1104335791443	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCAGTGTATGCTTCAGC	NA	False	NA	NA	False	AATAAA	-16	NA	17988028	17979596	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_17979922_17984993_17985178_17985853_17985986_17986940_17987104_17987835
transcript_26764.nic	chr14	-	1188	2	ISM	ENSMUSG00000079391.11	ENSMUST00000164512.8	1990	7	-51	16459	-51	-16459	5prime_fragment	FALSE	canonical	2	7	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAAATGTCCTCATAGTT	NA	False	NA	NA	False	AAGAAA	-8	NA	18287248	18281336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_18282389_18287112
transcript_26775.nnic	chr14	-	1728	3	NNC	ENSMUSG00000096775.2	novel	1817	6	NA	NA	-5588	-16478	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGGAGAAATGTCCTCAT	NA	False	NA	NA	False	AAGAAA	-6	NA	18451420	18444880	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_18445927_18449362_18449477_18450852
transcript_26778.nic	chr14	-	1279	3	ISM	ENSMUSG00000079402.10	ENSMUST00000167430.8	1933	7	-12	15368	-12	-15368	5prime_fragment	FALSE	canonical	0	0	junction_1	10	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAAATGTCCTCATAGTT	NA	False	NA	NA	False	AAGAAA	-8	NA	18817755	18811925	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_18812974_18816150_18816265_18817638
transcript_2679.known	chr1	+	1488	8	FSM	ENSMUSG00000026172.13	ENSMUST00000113733.10	1488	8	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	21.8136822818587	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGGCTTGTGCCTTTCCTC	1131	False	NA	4	True	CATAAA	-16	NA	74627447	74631283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_74627553_74628644_74629038_74629118_74629259_74629423_74629619_74629829_74629894_74630118_74630289_74630747_74630866_74630980
transcript_26792.nnic	chr14	-	1737	5	Fusion	ENSMUSG00000095195.8_ENSMUSG00000096488.2	novel	1955	7	NA	NA	-11	0	multi-exon	FALSE	canonical	0	0	junction_3	1.6393596310755	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	AATAAA	-17	NA	19057170	18875552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr14_-_18876696_18880194_18880378_18881053_18881186_18882135_18882299_19057054
transcript_268.known	SIRV3	-	479	3	FSM	SIRV3B	SIRV308	479	3	0	0	0	0	multi-exon	FALSE	canonical	3	5391	junction_1	17	11779	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTATTTGTATGGCGGA	NA	False	NA	NA	False	NA	NA	NA	1982	1000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV3_-_1168_1532_1765_1902
transcript_2680.known	chr1	+	1890	8	FSM	ENSMUSG00000026172.13	ENSMUST00000027358.11	1890	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	42.4562199476696	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGCCTCTGCCTTCTGA	1142	False	NA	NA	False	NA	NA	NA	74627458	74631602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_74627647_74628644_74629038_74629118_74629259_74629423_74629619_74629829_74629894_74630118_74630289_74630747_74630866_74630980
transcript_26805.nic	chr14	-	1278	3	ISM	ENSMUSG00000096488.2	ENSMUST00000170123.2	1933	7	-11	15369	-11	-15369	5prime_fragment	FALSE	canonical	0	0	junction_1	10	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAAATGTCCTCATAGTT	NA	False	NA	NA	False	AAGAAA	-8	NA	19057170	19051341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_19052390_19055566_19055681_19057054
transcript_26811.nnic	chr14	-	2329	8	NNC	ENSMUSG00000096574.8	novel	1955	7	NA	NA	-223	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1.38505138783324	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	AATAAA	-17	NA	19137369	19114973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_19116117_19119615_19119799_19120474_19120607_19121556_19121720_19122451_19122587_19132241_19132393_19135569_19135684_19137061
transcript_26817.nnic	chr14	-	2210	7	NNC	ENSMUSG00000096574.8	novel	1955	7	NA	NA	-239	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1.46249406456535	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	AATAAA	-17	NA	19137385	19114973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_19116117_19119615_19119799_19120474_19120607_19121556_19121720_19132241_19132393_19135569_19135684_19137061
transcript_2682.known	chr1	-	1451	10	FSM	ENSMUSG00000026171.13	ENSMUST00000113721.8	1451	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	27.6463557752974	1064	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTAGCCTATGTGGTATGA	NA	False	NA	NA	False	AATAAA	-25	NA	74640536	74632911	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_74633562_74633718_74633854_74634367_74634458_74634789_74634928_74635024_74635097_74637520_74637591_74637688_74637757_74637851_74637952_74638224_74638300_74640483
transcript_26825.nnic	chr14	-	2042	6	NNC	ENSMUSG00000096574.8	novel	1955	7	NA	NA	-185	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1.46969384566991	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	AATAAA	-17	NA	19137331	19114973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_19116117_19119615_19119799_19120474_19120607_19121556_19121720_19132241_19132393_19137061
transcript_26826.nnic	chr14	-	2043	6	NIC	ENSMUSG00000096574.8	novel	1955	7	NA	NA	-223	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	1.54919333848297	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	AATAAA	-17	NA	19137369	19114973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_-_19116117_19119615_19119799_19120474_19120607_19121556_19121720_19135569_19135684_19137061
transcript_26828.nnic	chr14	-	1945	5	NIC	ENSMUSG00000096574.8	novel	1955	7	NA	NA	-239	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	1.6393596310755	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	AATAAA	-17	NA	19137385	19114973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_-_19116117_19119615_19119799_19120474_19120607_19121556_19121720_19137061
transcript_26831.nnic	chr14	-	1485	3	NNC	ENSMUSG00000096574.8	novel	1955	7	NA	NA	-235	-16368	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAATGTCCTCATAGTTT	NA	False	NA	NA	False	AAAAAG	-1	NA	19137381	19131341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_19132393_19135569_19135684_19137061
transcript_26832.known	chr14	-	1955	7	FSM	ENSMUSG00000096574.8	ENSMUST00000177786.8	1955	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.46249406456535	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	AATAAA	-17	NA	19137146	19114973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_19116117_19119615_19119799_19120474_19120607_19121556_19121720_19122451_19122587_19135569_19135684_19137061
transcript_26834.known	chr14	+	4876	21	FSM	ENSMUSG00000021806.5	ENSMUST00000022340.5	4876	21	0	0	0	0	multi-exon	FALSE	canonical	3	1309	junction_14	132.834897523204	1793	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTGGTCTAAATATCTAT	NA	False	NA	24	True	AATAAA	-16	NA	19801332	19861855	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_19801634_19802308_19802618_19813733_19813967_19818277_19819006_19828063_19828214_19828805_19829052_19829604_19829806_19831202_19831434_19839738_19839883_19840345_19840475_19841575_19841720_19847231_19847352_19848464_19848714_19852405_19852628_19853116_19853287_19855365_19855496_19855910_19856083_19857994_19858153_19860047_19860172_19861021_19861135_19861253
transcript_26842.known	chr14	-	1562	8	FSM	ENSMUSG00000021807.7	ENSMUST00000022341.7	1562	8	0	0	0	0	multi-exon	FALSE	canonical	3	1848	junction_5	420.22365279378	8811	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAATATACTTGAGTCTC	1688	False	NA	NA	False	AGTAAA	-19	NA	19873892	19861418	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_19862306_19862416_19862466_19864604_19864674_19866252_19866342_19867128_19867216_19869974_19870075_19872633_19872759_19873736
transcript_26843.known	chr14	+	3976	17	FSM	ENSMUSG00000021806.5	ENSMUST00000225791.2	3976	17	0	0	0	0	multi-exon	FALSE	canonical	3	1309	junction_14	123.598391979831	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATATGTAGACCCGCTGCT	NA	False	NA	NA	False	AATAAA	-23	NA	19801351	19856198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_19801634_19802308_19802618_19813733_19813967_19818277_19819006_19828063_19828214_19828805_19829052_19829604_19829806_19831202_19831434_19839738_19839883_19840345_19840475_19841575_19841720_19847231_19847352_19848464_19848714_19852405_19852628_19853116_19853287_19855365_19855496_19855910
transcript_26845.known	chr14	-	960	5	FSM	ENSMUSG00000043004.14	ENSMUST00000159073.8	960	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	48.2312139594267	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTATGAGAATGAAAGCTG	NA	False	NA	NA	False	AAGAAA	-6	NA	20027695	19925722	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_19926004_19941353_19941470_20010721_20010763_20027025_20027066_20027213
transcript_26846.known	chr14	-	3826	4	FSM	ENSMUSG00000043004.14	ENSMUST00000160013.8	3826	4	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_3	22.3755819291179	818	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTACGGGGTCACTTTC	NA	False	NA	-4	True	AATAAA	-18	NA	20027317	19922626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_19926004_19941353_19941470_20010721_20010763_20027025
transcript_26851.known	chr14	-	458	3	FSM	ENSMUSG00000043004.14	ENSMUST00000159028.8	458	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	62	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTGGACACTCCGGGCTG	NA	False	NA	NA	False	TTTAAA	-17	NA	20027127	19925763	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_19926004_19941353_19941470_20027025
transcript_26852.known	chr14	-	2315	2	FSM	ENSMUSG00000045107.6	ENSMUST00000059666.6	2315	2	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	0	259	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATTCCTTCAGTGGTTTT	5305	False	NA	NA	False	AATAAA	-41	NA	20133251	20125703	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_20127713_20132945
transcript_26853.known	chr14	-	3392	5	FSM	ENSMUSG00000023243.10	ENSMUST00000024011.10	3392	5	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_3	12.5573683548744	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTGTGTGGTATGTTTG	NA	False	NA	NA	False	AATAAA	-18	NA	20231877	20190124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_20192526_20194702_20194872_20195023_20195191_20196568_20196681_20231334
transcript_26865.known	chr14	+	2494	9	FSM	ENSMUSG00000021809.11	ENSMUST00000022343.6	2494	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	3.70809924354783	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGACTCTTTTCTTCTCC	NA	False	NA	NA	False	ATTAAA	-15	NA	20344789	20367646	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_20344861_20350654_20350748_20354020_20354161_20356299_20356435_20357760_20357868_20359739_20359866_20360689_20360802_20361538_20361694_20366091
transcript_26869.known	chr14	+	744	2	FSM	ENSMUSG00000021809.11	ENSMUST00000224674.2	744	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTACAGAGTGATACTTTG	NA	False	NA	NA	False	NA	NA	NA	20344811	20345850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_20344861_20345155
transcript_26870.known	chr14	+	1633	10	FSM	ENSMUSG00000021809.11	ENSMUST00000223663.2	1633	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.95248677154617	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGAAAATAAAAACTGT	NA	False	NA	NA	False	NA	NA	NA	20344764	20366564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_20344861_20345138_20345335_20350654_20350748_20354020_20354161_20356299_20356435_20357760_20357868_20359739_20359866_20360689_20360802_20361538_20361694_20366091
transcript_26873.known	chr14	-	3132	14	FSM	ENSMUSG00000021810.4	ENSMUST00000022344.4	3132	14	0	0	0	0	multi-exon	FALSE	canonical	3	477	junction_8	30.9081479462529	224	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTTTGCTTCCTGTTCCT	NA	False	NA	NA	False	NA	NA	NA	20398189	20369919	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_20371020_20374440_20374650_20377291_20377360_20378670_20378858_20378950_20379058_20380021_20380108_20383396_20383526_20386136_20386266_20386949_20387143_20388196_20388376_20388476_20388565_20393323_20393442_20396678_20396890_20397861
transcript_26881.known	chr14	+	2151	14	FSM	ENSMUSG00000039599.17	ENSMUST00000225942.2	2151	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	90.1241746919511	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCACTGCTCATGTTGTCTG	NA	False	NA	NA	False	AGTAAA	-40	NA	20398289	20433344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20409822_20409985_20413330_20413519_20424397_20424523_20425577_20425682_20427842_20428068_20428467_20428592_20428831_20428952_20431820_20431890_20432984
transcript_26891.known	chr14	+	4483	8	FSM	ENSMUSG00000039599.17	ENSMUST00000224721.2	4483	8	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_7	47.5106862308097	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGACAGTTATTCATTCT	NA	False	NA	NA	False	NA	NA	NA	20398327	20421410	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20409822_20409985_20413330_20413519_20417913
transcript_26894.nic	chr14	+	1060	7	ISM	ENSMUSG00000039599.17	ENSMUST00000224721.2	4483	8	-25	7843	-4	-1745	5prime_fragment	FALSE	canonical	3	175	junction_5	36.4771618047969	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCCAGTCAGTCATTTGT	NA	False	NA	NA	False	NA	NA	NA	20398302	20413567	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20409822_20409985_20413330
transcript_26895.nic	chr14	+	1568	7	NIC	ENSMUSG00000039599.17	novel	4483	8	NA	NA	-4	497	combination_of_known_junctions	FALSE	canonical	3	59	junction_5	78.3207436691512	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGAATATGTTCTTTAAT	NA	False	NA	14	True	NA	NA	NA	20398302	20418632	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20413330_20413519_20417913
transcript_26898.known	chr14	+	2716	6	FSM	ENSMUSG00000039599.17	ENSMUST00000224930.2	2716	6	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_5	79.7004391455907	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCACCAGTTAAATGTTCTC	NA	False	NA	7	True	NA	NA	NA	20398229	20415312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20413330
transcript_26900.known	chr14	+	742	6	FSM	ENSMUSG00000039599.17	ENSMUST00000225597.2	742	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	102.971063896611	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCATCAGCCAAACGTGAGT	NA	False	NA	NA	False	NA	NA	NA	20398251	20425599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20424397_20424523_20425577
transcript_26904.known	chr14	-	1631	5	FSM	ENSMUSG00000021811.8	ENSMUST00000022345.7	1631	5	0	0	0	0	multi-exon	TRUE	canonical	3	896	junction_2	62.1711347813437	1418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTTATGTGTTTTGAAC	NA	False	NA	NA	False	ATTAAA	-23	NA	20438978	20434705	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_20435547_20435867_20435955_20438024_20438280_20438367_20438509_20438671
transcript_26905.known	chr14	-	1164	3	FSM	ENSMUSG00000021811.8	ENSMUST00000223950.2	1164	3	0	0	0	0	multi-exon	FALSE	canonical	3	933	junction_1	10.5	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAATTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20438944	20437529	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_20438280_20438367_20438509_20438671
transcript_26909.known	chr14	-	801	3	FSM	ENSMUSG00000049960.5	ENSMUST00000224286.2	801	3	0	0	0	0	multi-exon	TRUE	canonical	3	91	junction_2	790	2040	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACGGTCCTCTGGCATAG	8678	False	NA	-36	True	AATAAA	-14	NA	20443551	20441294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_20441529_20441960_20442222_20443245
transcript_26917.known	chr14	-	2727	13	FSM	ENSMUSG00000021814.18	ENSMUST00000224975.2	2727	13	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_12	241.43268845696	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCTTTTGACCTAGAGTA	8200	False	NA	-1	True	AATAAA	-24	NA	20529979	20505344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529847
transcript_26921.known	chr14	-	2851	13	FSM	ENSMUSG00000021814.18	ENSMUST00000065504.17	2851	13	0	0	0	0	multi-exon	FALSE	canonical	3	603	junction_12	120.241741458151	618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATTTGTATGTTTTTTTT	7978	False	NA	16	True	AATAAA	-41	NA	20530201	20505327	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529962
transcript_26922.known	chr14	-	988	3	FSM	ENSMUSG00000021814.18	ENSMUST00000224344.2	988	3	0	0	0	0	multi-exon	FALSE	canonical	3	603	junction_2	177.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAAAAATAGACG	8170	False	NA	NA	False	NA	NA	NA	20530009	20520754	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_20521641_20523342_20523398_20529962
transcript_26923.known	chr14	-	1826	7	FSM	ENSMUSG00000021815.5	ENSMUST00000022353.5	1826	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.372677996249965	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAAGTTAACATTACCAGA	NA	False	NA	NA	False	AATAAA	-15	NA	20546969	20532934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_20533310_20533617_20533712_20534702_20535270_20536214_20536340_20537092_20537249_20537511_20537754_20546702
transcript_26932.known	chr14	+	4461	23	FSM	ENSMUSG00000039367.12	ENSMUST00000048657.10	4461	23	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_9	29.806850674089	407	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTCTCATTACTCGCGAC	NA	False	NA	15	True	AATAAA	-18	NA	20724375	20744920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_20724457_20726025_20726226_20729595_20729732_20732746_20732920_20733155_20733531_20733952_20734090_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739532_20739701_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505_20741652_20741768_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
transcript_26936.known	chr14	-	1554	3	FSM	ENSMUSG00000097577.3	ENSMUST00000180987.2	1554	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAGTAGGCTCTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	20753080	20737303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_20738682_20738832_20738908_20752979
transcript_26939.known	chr14	-	1019	1	FSM	ENSMUSG00000097577.3	ENSMUST00000224976.2	1019	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCAAAATGGTGGACTTCG	NA	False	NA	NA	False	AATAAA	-17	NA	20753096	20752077	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_20752100_20753100
transcript_26940.known	chr14	+	578	3	FSM	ENSMUSG00000063787.5	ENSMUST00000226072.2	578	3	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_1	962	2397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGCCATTTCTTCTAATT	NA	False	NA	33	True	AATAAA	-16	NA	20753125	20754493	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_20753266_20753343_20753477_20754188
transcript_26941.known	chr14	+	557	2	FSM	ENSMUSG00000063787.5	ENSMUST00000224633.2	557	2	0	0	0	0	multi-exon	FALSE	canonical	3	2056	junction_1	0	586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAAGTTGGCCATTTCTT	NA	False	NA	27	True	AATAAA	-10	NA	20753218	20754487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_20753477_20754188
transcript_26944.known	chr14	-	3604	20	FSM	ENSMUSG00000021820.19	ENSMUST00000080440.14	3604	20	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_6	9.18507762457831	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTCCATTGTGTTATT	NA	False	NA	-8	True	AATAAA	-10	NA	20844098	20784950	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_20786921_20787326_20787572_20788916_20789012_20789394_20789471_20792772_20792822_20794671_20794717_20795859_20795929_20805726_20805771_20810211_20810255_20810464_20810549_20814213_20814337_20814928_20815024_20815463_20815548_20815979_20816083_20816220_20816294_20820131_20820198_20821074_20821130_20829271_20829332_20842586_20842682_20843968
transcript_26947.known	chr14	-	3564	19	FSM	ENSMUSG00000021820.19	ENSMUST00000100837.11	3564	19	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	6.2610396328366	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGTTATTGCTGTTGG	NA	False	NA	0	True	AATAAA	-18	NA	20844119	20784942	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_20786921_20787326_20787572_20788916_20789012_20789394_20789471_20792772_20792822_20794671_20794717_20805726_20805771_20810211_20810255_20810464_20810549_20814213_20814337_20814928_20815024_20815463_20815548_20815979_20816083_20816220_20816294_20820131_20820198_20821074_20821130_20829271_20829332_20842586_20842682_20843968
transcript_26950.known	chr14	+	449	2	FSM	ENSMUSG00000114241.2	ENSMUST00000224276.2	449	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAAGCCTCCATTTTTCTT	1068	False	NA	NA	False	AATAAA	-25	NA	20844306	20846628	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_20844529_20846401
transcript_26953.known	chr14	+	5267	21	FSM	ENSMUSG00000021823.11	ENSMUST00000022369.9	5267	21	0	0	0	0	multi-exon	TRUE	canonical	3	265	junction_11	15.7968351260624	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTAATTGAGGTTATTT	NA	False	NA	NA	False	AATAAA	-19	NA	20979465	21083744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_20979757_21017605_21017677_21032641_21032793_21033435_21033545_21035694_21035818_21037025_21037187_21045079_21045171_21045912_21046061_21051198_21051353_21053162_21053339_21057181_21057373_21058928_21059129_21060105_21060235_21064978_21065129_21069347_21069457_21070546_21070850_21072070_21072196_21074173_21074360_21079243_21079448_21079849_21079955_21081654
transcript_26956.known	chr14	-	6732	9	FSM	ENSMUSG00000021824.14	ENSMUST00000154460.8	6732	9	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_8	42.1092329543059	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCAATGACTGCACTGTGT	NA	False	NA	NA	False	CATAAA	-29	NA	21102518	21081509	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21094720_21094893_21095555_21095832_21102207
transcript_26958.known	chr14	-	1770	9	FSM	ENSMUSG00000021824.14	ENSMUST00000022371.10	1770	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	105.050880529389	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTATTATATTTTTTATAAA	NA	False	NA	NA	False	NA	NA	NA	21102290	21086081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21094882_21094893_21095555_21095832_21102207
transcript_26962.nic	chr14	-	2178	9	NIC	ENSMUSG00000021824.14	novel	6732	9	NA	NA	-11	264	combination_of_known_junctions	FALSE	canonical	3	26	junction_8	95.1609656056516	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGCCATTCTCATGTTT	NA	False	NA	4	True	ATTAAA	-27	NA	21102587	21085817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21094720_21094893_21095555_21095832_21102522
transcript_26967.nic	chr14	-	2708	7	NIC	ENSMUSG00000021824.14	novel	6732	9	NA	NA	-17	1207	combination_of_known_junctions	FALSE	canonical	3	34	junction_6	106.531163932855	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTTTAAAGTTTGATTG	NA	False	NA	-8	True	AATAAA	-17	NA	21102307	21084874	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21102207
transcript_26969.nic	chr14	-	1765	7	NIC	ENSMUSG00000021824.14	novel	6732	9	NA	NA	-17	264	combination_of_known_junctions	FALSE	canonical	3	34	junction_6	106.531163932855	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGCCATTCTCATGTTT	NA	False	NA	4	True	ATTAAA	-27	NA	21102307	21085817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21102207
transcript_2697.known	chr1	+	485	2	FSM	ENSMUSG00000033257.15	ENSMUST00000153636.8	485	2	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGTTTCCTGTTTGGATC	NA	False	NA	NA	False	AATAAA	-19	NA	74700975	74712414	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_74701049_74712002
transcript_26972.known	chr14	-	764	6	FSM	ENSMUSG00000021824.14	ENSMUST00000224016.2	764	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_5	125.62420149	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAAGTGTCATTGCAATT	NA	False	NA	NA	False	NA	NA	NA	21102263	21086636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21102207
transcript_26976.known	chr14	+	1818	11	FSM	ENSMUSG00000039197.11	ENSMUST00000224069.2	1818	11	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	100.003199948802	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGGGATTTTTTTTCTGTC	NA	False	NA	9	True	AATAAA	-12	NA	21126219	21498630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_21126390_21142434_21142510_21153887_21153942_21219867_21219947_21284900_21285074_21290530_21290640_21368080_21368252_21419138_21419175_21431570_21431686_21473570_21473658_21497881
transcript_2698.known	chr1	+	1892	9	FSM	ENSMUSG00000026170.7	ENSMUST00000027356.7	1892	9	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_5	1.98431348329844	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGGGGGGGTCTTTGT	NA	False	NA	NA	False	AATAAA	-14	NA	74752732	74777051	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_74753051_74771077_74771269_74774435_74774636_74774712_74774911_74775022_74775196_74775839_74776007_74776175_74776258_74776337_74776551_74776701
transcript_26981.known	chr14	+	289	2	FSM	ENSMUSG00000039197.11	ENSMUST00000223558.2	289	2	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	0	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTATGATGATCCATTTTA	NA	False	NA	4	True	AATAAA	-15	NA	21102678	21103988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_21102769_21103789
transcript_26982.known	chr14	+	1782	11	FSM	ENSMUSG00000039197.11	ENSMUST00000045376.11	1782	11	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_9	34.7499640287584	1604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTCTGTCTTGCTTG	NA	False	NA	16	True	AATAAA	-19	NA	21102641	21498637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_21102769_21142434_21142510_21153887_21153942_21219867_21219947_21284900_21285074_21290530_21290640_21368080_21368252_21419138_21419175_21431570_21431686_21473570_21473658_21497881
transcript_26983.known	chr14	+	2224	7	FSM	ENSMUSG00000039197.11	ENSMUST00000225742.2	2224	7	0	0	0	0	multi-exon	FALSE	canonical	3	350	junction_6	21.6596142368439	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAATACCCACT	NA	False	NA	NA	False	NA	NA	NA	21102684	21369730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_21102769_21142434_21142510_21153887_21153942_21219867_21219947_21284900_21285074_21290530_21290640_21368080
transcript_26986.known	chr14	+	1574	6	FSM	ENSMUSG00000021770.12	ENSMUST00000022292.10	1574	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	7.55248303539968	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTGTCCCAGGCTCCTG	2614	False	NA	NA	False	AATATA	-25	NA	21800598	21843370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_21800849_21825030_21825624_21830153_21830250_21833746_21833865_21842471_21842623_21843004
transcript_26988.known	chr14	+	1613	6	FSM	ENSMUSG00000021770.12	ENSMUST00000144061.2	1613	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	6.01331855134916	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTGTCCCAGGCTCCTG	2631	False	NA	NA	False	AATATA	-25	NA	21800615	21843370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_21800905_21825030_21825624_21830153_21830250_21833746_21833865_21842471_21842623_21843004
transcript_27.known	ERCC-00059	+	509	1	FSM	ERCC-00059A	DQ668356	509	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	217	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	509	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00059_+_0_500
transcript_27001.known	chr14	+	956	9	FSM	ENSMUSG00000021771.15	ENSMUST00000173456.8	956	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	778.902824089758	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAGTTAAAAGAAACCTCT	NA	False	NA	NA	False	NA	NA	NA	21881633	21895305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_21881736_21882951_21883021_21883868_21883919_21887811_21887965_21888058_21888112_21888458_21888687_21890486_21890638_21893949_21894008_21895213
transcript_27006.known	chr14	+	1954	10	FSM	ENSMUSG00000021771.15	ENSMUST00000022293.14	1954	10	0	0	0	0	multi-exon	FALSE	canonical	3	2055	junction_4	139.679350612946	7015	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCTGCAGTTTCTAAGTT	NA	False	NA	12	True	AATAAA	-22	NA	21881336	21895947	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_21881736_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21887965_21888058_21888112_21888458_21888687_21890486_21890638_21893949_21894008_21895213
transcript_27007.known	chr14	-	2314	7	FSM	ENSMUSG00000021773.12	ENSMUST00000124549.9	2314	7	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_3	15.9661099415815	1368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTAATCTCAAAGACCTCG	NA	False	NA	NA	False	ATTAAA	-21	NA	21899045	21895922	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_21897496_21897681_21897816_21897940_21897996_21898069_21898189_21898277_21898384_21898608_21898737_21898846
transcript_27008.known	chr14	-	981	6	FSM	ENSMUSG00000021773.12	ENSMUST00000022295.4	981	6	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_1	9.09065454189081	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTGAGCATCCTCTTCC	NA	False	NA	-10	True	AATAAA	-17	NA	21898962	21897246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_21897496_21897681_21897816_21897940_21898189_21898277_21898384_21898608_21898737_21898846
transcript_27009.known	chr14	-	440	2	FSM	ENSMUSG00000021773.12	ENSMUST00000152905.2	440	2	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_1	0	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCGACCTTCTGAGCATCC	NA	False	NA	-16	True	AATAAA	-11	NA	21897878	21897252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_21897496_21897681
transcript_27010.known	chr14	+	377	4	FSM	ENSMUSG00000021771.15	ENSMUST00000152562.8	377	4	0	0	0	0	multi-exon	FALSE	canonical	3	2055	junction_3	159.754673031982	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGAGTATGGTCTGACTT	NA	False	NA	NA	False	AATACA	-45	NA	21881793	21887885	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_21881978_21882951_21883021_21883868_21883919_21887811
transcript_27018.known	chr14	-	4687	31	FSM	ENSMUSG00000025280.9	ENSMUST00000026322.9	4687	31	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_23	15.9947560851118	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTAAGTGTTTTTTGTT	NA	False	NA	-3	True	AATACA	-26	NA	24537120	24498763	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_24499291_24500762_24500896_24502260_24502393_24502578_24502744_24503238_24503404_24504637_24504731_24504922_24505017_24505931_24506103_24507084_24507168_24507286_24507374_24510031_24510146_24511767_24511939_24513621_24513760_24514319_24514439_24515328_24515441_24517002_24517176_24519332_24519498_24520601_24520741_24520887_24521016_24521805_24521876_24524240_24524382_24525807_24525950_24526080_24526185_24529173_24529311_24529426_24529590_24529703_24529944_24532447_24532603_24532854_24533027_24534185_24534324_24534454_24534591_24536940
transcript_27019.nnic	chr14	-	1436	9	NNC	ENSMUSG00000025280.9	novel	775	3	NA	NA	-15	-5713	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_1	46.1923627345474	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGTTTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	24537141	24527286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_24527381_24529173_24529311_24529426_24529590_24529703_24529944_24532447_24532603_24532854_24533027_24534185_24534324_24534454_24534591_24536940
transcript_27020.known	chr14	-	775	3	FSM	ENSMUSG00000025280.9	ENSMUST00000225014.2	775	3	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_2	5.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAGAAAAAAAAAATCTG	NA	False	NA	NA	False	NA	NA	NA	24537126	24533870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_24534324_24534454_24534591_24536940
transcript_2703.known	chr1	+	2071	4	FSM	ENSMUSG00000033227.8	ENSMUST00000006716.8	2071	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.49443825784929	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTGTGAGGAACCCCTG	NA	False	NA	NA	False	ATTAAA	-32	NA	74811050	74824481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_74811382_74821260_74821482_74821718_74822054_74823297
transcript_27033.known	chr14	+	714	6	FSM	ENSMUSG00000025290.18	ENSMUST00000224568.2	714	6	0	0	0	0	multi-exon	FALSE	canonical	3	776	junction_1	4812.24305288085	1282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTCTGAGAGGACAAATAAA	NA	False	NA	-18	True	NA	NA	NA	24540834	24545891	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_24541093_24541817_24541884_24541974_24542185_24543450_24543562_24545497_24545518_24545842
transcript_27047.known	chr14	+	519	6	FSM	ENSMUSG00000025290.18	ENSMUST00000169826.3	519	6	0	0	0	0	multi-exon	FALSE	canonical	3	4464	junction_5	3607.86166031903	86142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCTCCTACACGTCTG	NA	False	NA	4	True	AATAAA	-3	NA	24540785	24545913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24545497_24545518_24545842
transcript_27048.known	chr14	+	525	7	FSM	ENSMUSG00000025290.18	ENSMUST00000223999.2	525	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_5	5419.3877396088	2375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCTCCTACACGTCTG	NA	False	NA	4	True	AATAAA	-3	NA	24540797	24545913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24544119_24544138_24545497_24545518_24545842
transcript_27049.known	chr14	+	1613	5	FSM	ENSMUSG00000025290.18	ENSMUST00000225023.2	1613	5	0	0	0	0	multi-exon	FALSE	canonical	3	4092	junction_4	3560.754932244	24098	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATCTTGGGACTGGAGAG	NA	False	NA	NA	False	AATAAA	-20	NA	24540785	24547027	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24545842
transcript_2705.known	chr1	+	920	2	FSM	ENSMUSG00000033227.8	ENSMUST00000189544.2	920	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCGCCTGCCTCGGAACTG	4527	False	NA	NA	False	NA	NA	NA	74821597	74823761	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_74822054_74823297
transcript_27050.known	chr14	+	468	5	FSM	ENSMUSG00000025290.18	ENSMUST00000112384.10	468	5	0	0	0	0	multi-exon	FALSE	canonical	3	5102	junction_4	3158.6347030798	1826	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGAGATTGGATACAGGTA	NA	False	NA	NA	False	NA	NA	NA	24540748	24545500	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24545497
transcript_27051.known	chr14	+	2769	4	FSM	ENSMUSG00000025290.18	ENSMUST00000223939.2	2769	4	0	0	0	0	multi-exon	FALSE	canonical	3	9630	junction_1	1522.07774659071	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCTCCTACACGTCTG	NA	False	NA	4	True	AATAAA	-3	NA	24540796	24545913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450
transcript_27052.known	chr14	+	4059	3	FSM	ENSMUSG00000025290.18	ENSMUST00000225994.2	4059	3	0	0	0	0	multi-exon	FALSE	canonical	3	9630	junction_1	1373	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTCTGCTCTGCTGCTTAT	NA	False	NA	17	True	AATAAA	-16	NA	24540785	24545926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_24540827_24541817_24541884_24541974
transcript_27055.nnic	chr14	-	623	4	Antisense	novelGene_ENSMUSG00000007817.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	2.49443825784929	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTCATAATTTGTCTAG	2428	False	NA	NA	False	AATAAA	-16	NA	25591543	25590220	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr14_-_25590440_25590751_25590907_25591157_25591288_25591424
transcript_27057.nnic	chr14	-	940	3	Antisense	novelGene_ENSMUSG00000007817.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	2	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATAATTTGTCTAGCCTGG	2428	False	NA	NA	False	AATAAA	-21	NA	25591543	25590215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr14_-_25590907_25591157_25591288_25591424
transcript_27062.known	chr14	+	1549	6	FSM	ENSMUSG00000021868.8	ENSMUST00000022419.7	1549	6	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_3	21.4532048887806	354	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGTCTCTGGTTTTGGA	392	False	NA	NA	False	AATAAA	-18	NA	25694593	25700892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_25694848_25695896_25695928_25696427_25696517_25697996_25698094_25698689_25698766_25699890
transcript_2707.known	chr1	-	720	5	FSM	ENSMUSG00000006546.4	ENSMUST00000006721.3	720	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCCCCTCTTGCCTCTTT	3279	False	NA	NA	False	AATAAA	-15	NA	74932302	74929092	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_74929296_74929689_74929833_74931104_74931247_74931885_74932051_74932235
transcript_27072.nnic	chr14	+	2454	16	NNC	ENSMUSG00000021866.16	novel	2394	15	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	139.082165962746	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTGCCAGCATGTTT	-7	True	NA	26	True	AATAAA	-34	NA	25842597	25887228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_25842720_25843130_25843209_25869287_25869351_25870492_25870606_25872935_25873323_25874367_25874456_25874633_25874729_25875094_25875209_25877084_25877176_25877532_25877613_25877774_25877832_25879507_25879602_25883339_25883436_25884350_25884410_25884565_25884689_25886434
transcript_27075.known	chr14	+	2394	15	FSM	ENSMUSG00000021866.16	ENSMUST00000022416.15	2394	15	0	0	0	0	multi-exon	TRUE	canonical	3	387	junction_6	25.4603533329122	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTGCCAGCATGTTT	336	False	NA	26	True	AATAAA	-34	NA	25842579	25887228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_25842720_25869287_25869351_25870492_25870606_25872935_25873323_25874367_25874456_25874633_25874729_25875094_25875209_25877084_25877176_25877532_25877613_25877774_25877832_25879507_25879602_25883339_25883436_25884350_25884410_25884565_25884689_25886434
transcript_2708.nnic	chr1	-	1433	9	NNC	ENSMUSG00000026162.9	novel	1586	8	NA	NA	-46	-215	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_7	11.8927498922663	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGACTGTTGAGGTTACCTGT	NA	False	NA	-8	True	AATAAA	-17	NA	75101890	75006512	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_75006928_75007327_75007435_75007953_75008072_75084467_75084527_75085659_75085799_75094701_75094915_75097219_75097397_75097876_75097971_75101779
transcript_27081.known	chr14	+	1625	11	FSM	ENSMUSG00000021866.16	ENSMUST00000112364.8	1625	11	0	0	0	0	multi-exon	FALSE	canonical	3	387	junction_6	28.7647353542493	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCGATGGTGATGGTGGAG	2	True	NA	NA	False	ATTAAA	-15	NA	25842606	25879931	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_25842720_25869287_25869351_25870492_25870606_25872935_25873323_25874367_25874456_25874633_25874729_25875094_25875209_25877084_25877176_25877532_25877613_25877774_25877832_25879507
transcript_27087.known	chr14	-	536	4	FSM	ENSMUSG00000095304.10	ENSMUST00000183431.8	536	4	0	0	0	0	multi-exon	TRUE	canonical	3	49	junction_3	71.4624998785299	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGCTAGCCATGACCTCT	NA	False	NA	-14	True	AATAAA	-18	NA	25902898	25888827	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_25888951_25889319_25889444_25891184_25891280_25902704
transcript_27088.known	chr14	-	439	4	FSM	ENSMUSG00000095304.10	ENSMUST00000183725.2	439	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	90.5796150724139	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGCTAGCCATGACCTC	NA	False	NA	-15	True	AATAAA	-17	NA	25902900	25888828	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_25888951_25889319_25889444_25891184_25891280_25902802
transcript_27089.nnic	chr14	-	455	4	NNC	ENSMUSG00000095304.10	novel	536	4	NA	NA	-56	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_3	82.174610839764	256	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGCTAGCCATGACCTCT	NA	False	NA	-14	True	AATAAA	-18	NA	25902956	25888827	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_25888951_25889319_25889444_25891184_25891280_25902843
transcript_2709.nnic	chr1	-	1511	9	NNC	ENSMUSG00000026162.9	novel	1586	8	NA	NA	-46	-215	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_7	10.6183802907977	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGACTGTTGAGGTTACCTGT	NA	False	NA	-8	True	AATAAA	-17	NA	75101890	75006512	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_75006928_75007327_75007435_75007953_75008072_75084467_75084527_75085659_75085799_75094701_75094915_75097219_75097475_75097876_75097971_75101779
transcript_27094.known	chr14	-	1108	4	FSM	ENSMUSG00000072676.13	ENSMUST00000100811.6	1108	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	63.5627424063989	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTTCTCTTGATCGTGA	NA	False	NA	-13	True	NA	NA	NA	25927674	25924593	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_25925332_25925945_25926006_25926221_25926326_25927468
transcript_27098.nnic	chr14	-	722	4	NNC	ENSMUSG00000114753.2	novel	5711	2	NA	NA	5040	-171	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3.55902608401044	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCTTGGCTTCATTCT	1641	False	NA	NA	False	NA	NA	NA	26041069	26036336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_26036463_26036786_26036931_26040411_26040567_26040772
transcript_27099.nnic	chr14	-	697	4	NNC	ENSMUSG00000114753.2	novel	5711	2	NA	NA	5056	-171	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3.55902608401044	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCTTGGCTTCATTCT	1657	False	NA	NA	False	NA	NA	NA	26041053	26036336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_26036463_26036786_26036931_26040411_26040567_26040781
transcript_27100.nnic	chr14	-	543	4	NNC	ENSMUSG00000114753.2	novel	5711	2	NA	NA	5040	-171	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3.55902608401044	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCTTGGCTTCATTCT	1641	False	NA	NA	False	NA	NA	NA	26041069	26036336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_26036463_26036786_26036931_26040411_26040567_26040951
transcript_27101.nnic	chr14	-	480	4	NNC	ENSMUSG00000114753.2	novel	5711	2	NA	NA	4995	-171	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	3.09120616516523	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCTTGGCTTCATTCT	1596	False	NA	NA	False	NA	NA	NA	26041114	26036336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_26036463_26036786_26036931_26040411_26040567_26041059
transcript_27102.known	chr14	-	5476	24	FSM	ENSMUSG00000021870.18	ENSMUST00000102956.8	5476	24	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_11	42.4199902941944	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGAGTTGTACATCATT	NA	False	NA	1	True	AATAAA	-23	NA	26256086	26134322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_26136144_26137357_26137448_26139267_26139403_26143575_26143748_26147719_26147838_26148389_26148711_26149396_26149472_26150942_26151066_26159833_26159894_26160102_26160184_26163729_26163790_26180564_26180616_26181058_26181110_26181196_26181366_26183415_26183554_26184730_26184872_26186355_26186428_26186722_26186819_26189637_26189701_26191518_26191556_26195053_26195127_26203973_26204122_26254482_26255780_26256002
transcript_27103.known	chr14	+	2165	6	FSM	ENSMUSG00000021877.13	ENSMUST00000022429.9	2165	6	0	0	0	0	multi-exon	FALSE	canonical	3	1593	junction_4	101.482215190643	1388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	1686	False	NA	NA	False	NA	NA	NA	26359228	26378413	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374333_26374991_26375118_26377050
transcript_27106.known	chr14	-	7725	3	FSM	ENSMUSG00000043702.10	ENSMUST00000052932.10	7725	3	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_2	18	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTGTGGGTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	26391038	26381112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_26387123_26387532_26387612_26389402
transcript_27107.known	chr14	-	566	2	FSM	ENSMUSG00000090861.2	ENSMUST00000166902.2	566	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACTAATCTTTATTTATT	NA	False	NA	NA	False	AATAAA	-14	NA	26359338	26349561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_26349887_26359097
transcript_27108.known	chr14	+	1034	1	FSM	ENSMUSG00000021877.13	ENSMUST00000224138.2	1034	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAAAAAAAAAAAATCG	1855	False	NA	NA	False	TTTAAA	-31	NA	26359397	26360431	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_26359400_26360400
transcript_27109.known	chr14	+	1582	6	FSM	ENSMUSG00000021877.13	ENSMUST00000166075.8	1582	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	718.995577176939	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCATTTGGAATTATTCCT	1838	False	NA	-35	True	AATGAA	-16	NA	26359380	26377956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_26359642_26367813_26367895_26368042_26368179_26374260_26374333_26374991_26375118_26377050
transcript_27117.known	chr14	-	7642	22	FSM	ENSMUSG00000040760.12	ENSMUST00000036570.5	7642	22	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_6	31.5683759207952	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTTGTATGAAATATTT	NA	False	NA	-12	True	AATAAA	-20	NA	26693189	26640944	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_26645829_26647373_26647464_26647915_26647967_26649685_26649833_26650396_26650434_26650515_26650691_26662200_26662254_26664604_26664788_26665868_26665961_26667501_26667559_26669077_26669121_26671398_26671588_26672508_26672668_26673391_26673475_26674934_26675082_26680409_26680469_26681381_26681424_26682907_26682996_26684762_26684835_26685603_26685664_26686815_26686915_26692357
transcript_2712.nnic	chr1	-	1341	8	NNC	ENSMUSG00000026162.9	novel	1586	8	NA	NA	-48	-215	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_7	8.89622712968015	61	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGACTGTTGAGGTTACCTGT	NA	False	NA	-8	True	AATAAA	-17	NA	75101892	75006512	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_75006928_75007327_75007435_75007953_75008072_75084467_75084527_75085659_75085799_75094701_75094915_75097219_75097397_75101779
transcript_27125.nic	chr14	-	1652	16	ISM	ENSMUSG00000040760.12	ENSMUST00000036570.5	7642	22	672	21190	-55	10948	5prime_fragment	FALSE	canonical	3	283	junction_1	27.6115917686757	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTCTGCTGCTGTCCTC	NA	False	NA	NA	False	AGTAAA	-22	NA	26692517	26662134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_26662254_26664604_26664788_26665868_26665961_26667501_26667559_26669077_26669121_26671398_26671588_26672508_26672668_26673391_26673475_26674934_26675082_26680409_26680469_26681381_26681424_26682907_26682996_26684762_26684835_26685603_26685664_26686815_26686915_26692357
transcript_27128.nic	chr14	-	1088	10	ISM	ENSMUSG00000040760.12	ENSMUST00000036570.5	7642	22	672	31445	-55	693	5prime_fragment	FALSE	canonical	3	309	junction_5	27.4671520992702	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCACTTTATGTATGTATTT	NA	False	NA	NA	False	ACTAAA	-21	NA	26692517	26672389	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_26672668_26673391_26673475_26674934_26675082_26680409_26680469_26681381_26681424_26682907_26682996_26684762_26684835_26685603_26685664_26686815_26686915_26692357
transcript_2713.known	chr1	-	1586	8	FSM	ENSMUSG00000026162.9	ENSMUST00000152855.3	1586	8	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_7	8.89622712968015	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGTGTGCTTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	75101844	75006297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_75006928_75007327_75007435_75007953_75008072_75084467_75084527_75085659_75085799_75094701_75094915_75097219_75097475_75101779
transcript_27133.nnic	chr14	+	1111	5	NNC	ENSMUSG00000040726.11	novel	983	5	NA	NA	-95	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	69.4383719567215	657	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGTATTTTAATATACTTT	NA	False	NA	NA	False	AATAAA	-18	NA	26716277	26724286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_26716480_26722550_26722834_26723328_26723529_26723775_26723878_26723962
transcript_27134.known	chr14	+	983	5	FSM	ENSMUSG00000040726.11	ENSMUST00000224331.2	983	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	69.4383719567215	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGACCGGTATTTTAATATA	NA	False	NA	NA	False	AATAAA	-14	NA	26716372	26724282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_26716480_26722579_26722834_26723328_26723529_26723775_26723878_26723962
transcript_27138.nnic	chr14	+	1032	2	NNC	ENSMUSG00000040717.7	novel	2186	4	NA	NA	39	-34273	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTGTCTTGGTGTTCTA	NA	False	NA	NA	False	NA	NA	NA	26760936	26776933	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_26761187_26776151
transcript_27141.nnic	chr14	+	707	3	NNC	ENSMUSG00000021895.11	novel	3618	10	NA	NA	42017	24786	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGGCGGGCTCGGCATC	NA	False	NA	NA	False	NA	NA	NA	27125362	27150654	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_27125768_27140915_27141062_27150498
transcript_27142.known	chr14	-	4262	18	FSM	ENSMUSG00000046753.11	ENSMUST00000223689.2	4262	18	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_15	12.2471661858887	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATGACTGCAATTCAATT	7526	False	NA	NA	False	AATAAA	-17	NA	27230417	27203046	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_27204560_27205764_27205890_27206021_27206276_27207049_27207091_27208419_27208908_27211990_27212102_27212619_27212765_27213744_27213907_27214975_27215061_27215228_27215480_27216037_27216170_27219295_27219409_27220397_27220502_27220680_27220847_27222197_27222640_27227594_27227621_27228607_27228673_27230378
transcript_27147.known	chr14	+	7590	24	FSM	ENSMUSG00000040651.10	ENSMUST00000022450.6	7590	24	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_17	57.5794347345285	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTCGGGACTTTGATTC	8928	False	NA	16	True	AATAAA	-20	NA	27150790	27205512	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_27151342_27160555_27160702_27162107_27162201_27163386_27163460_27163843_27163936_27164415_27164578_27168341_27168467_27169447_27169480_27170111_27170218_27171713_27171818_27171902_27172007_27181735_27181809_27181897_27181970_27183040_27183743_27186002_27186371_27188123_27188269_27189462_27189523_27193574_27194504_27197651_27197775_27198494_27198655_27199068_27199178_27201585_27201765_27201880_27202049_27202598
transcript_27149.known	chr14	-	2457	16	FSM	ENSMUSG00000046753.11	ENSMUST00000050480.8	2457	16	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_14	25.3941375561806	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAATCTCTTGTC	7541	False	NA	NA	False	AATAAA	-15	NA	27230402	27204368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_27204560_27205764_27205890_27206021_27206276_27207049_27207091_27208419_27208908_27211990_27212102_27212619_27212765_27213744_27213907_27214975_27215061_27215228_27215480_27216037_27216170_27219295_27219409_27220397_27220502_27220680_27220847_27228607_27228673_27230378
transcript_27152.nic	chr14	+	1131	4	NIC	ENSMUSG00000040640.12	novel	1356	4	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	19.3448241713959	74	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTTTTATTGTCTGTTTA	2330	False	NA	15	True	ATTAAA	-12	NA	27344388	27375759	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_+_27344572_27350368_27350423_27374643_27375441_27375662
transcript_27153.nic	chr14	+	2533	4	NIC	ENSMUSG00000040640.12	novel	1356	4	NA	NA	4	1402	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	19.3448241713959	80	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACATTCTTGTTTGTTTGT	2330	False	NA	NA	False	AATAAA	-21	NA	27344388	27377161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_+_27344572_27350368_27350423_27374643_27375441_27375662
transcript_27154.nic	chr14	+	1063	3	NIC	ENSMUSG00000040640.12	novel	1356	4	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	11	78	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTTTTATTGTCTGTTTA	2344	False	NA	15	True	ATTAAA	-12	NA	27344402	27375759	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_+_27344572_27374643_27375441_27375662
transcript_27155.nic	chr14	+	2465	3	NIC	ENSMUSG00000040640.12	novel	1356	4	NA	NA	4	1402	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	11	83	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACATTCTTGTTTGTTTGT	2344	False	NA	NA	False	AATAAA	-21	NA	27344402	27377161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_+_27344572_27374643_27375441_27375662
transcript_27175.known	chr14	+	799	6	FSM	ENSMUSG00000042682.11	ENSMUST00000223998.2	799	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	468.484535497171	263	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGGTTGGTTTTG	NA	False	NA	11	True	AATAAA	-22	NA	29690384	29696797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_29690494_29691982_29692074_29692756_29692820_29693744_29693829_29695317_29695405_29696432
transcript_27176.nnic	chr14	+	2376	14	NNC	ENSMUSG00000015971.6	novel	2328	14	NA	NA	-3	-1253	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_13	85.8768900035766	142	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTGCTACTTACCGGAT	NA	False	NA	6	True	ATTAAA	-19	NA	29700290	29716571	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_29700546_29704555_29704727_29705986_29706098_29707882_29707988_29708233_29708408_29708878_29708973_29709175_29709309_29710145_29710300_29710909_29711006_29711616_29711758_29712660_29712926_29713548_29713713_29714917_29715103_29716243
transcript_27179.known	chr14	+	2119	13	FSM	ENSMUSG00000015971.6	ENSMUST00000016115.6	2119	13	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_4	26.6816364232448	639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACACTGATTTGAGATAAT	NA	False	NA	21	True	ATTAAA	-25	NA	29700293	29715176	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_29700546_29704555_29704727_29705986_29706098_29707882_29707988_29708233_29708408_29708878_29708973_29709175_29709309_29710145_29710300_29710909_29711006_29711616_29711758_29712660_29712926_29713548_29713713_29714917
transcript_27194.known	chr14	+	2328	14	FSM	ENSMUSG00000015971.6	ENSMUST00000224797.2	2328	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	90.2104705346494	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGTTTGTGTATTTGTGT	NA	False	NA	NA	False	AATAAA	-30	NA	29700374	29728311	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_29700546_29704555_29704727_29705986_29706098_29707882_29707988_29708233_29708408_29708878_29708973_29709175_29709309_29710145_29710300_29710909_29711006_29711616_29711758_29712660_29712926_29713548_29713713_29714917_29715103_29727947
transcript_27196.known	chr14	+	2044	3	FSM	ENSMUSG00000021962.10	ENSMUST00000225518.2	2044	3	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_2	6	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATGAAAATAAAAATAG	NA	False	NA	NA	False	NA	NA	NA	30201591	30208236	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_30201774_30204149_30204191_30206415
transcript_27197.known	chr14	+	5576	10	FSM	ENSMUSG00000021962.10	ENSMUST00000022535.9	5576	10	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_5	16.6332999331662	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAATTGTGTTTTTTATT	NA	False	NA	NA	False	AATAAA	-34	NA	30201568	30249020	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_30201774_30204149_30204191_30206415_30206544_30224782_30224850_30227502_30227642_30234940_30235055_30240875_30241635_30243546_30243613_30244684_30244904_30245182
transcript_272.known	SIRV3	-	796	3	FSM	SIRV3C	SIRV309	796	3	0	0	0	0	multi-exon	FALSE	canonical	3	1394	junction_2	16	1828	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCTCAAATATCTGTGTC	NA	False	NA	NA	False	CATAAA	-21	NA	9943	8797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV3_-_8976_9189_9299_9434
transcript_27202.known	chr14	+	3223	14	FSM	ENSMUSG00000021957.8	ENSMUST00000022529.8	3223	14	0	0	0	0	multi-exon	FALSE	canonical	3	1855	junction_3	147.090520774709	8503	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAATTACTGGAGGATTAGA	NA	False	NA	NA	False	NA	NA	NA	30271087	30296677	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
transcript_27203.known	chr14	-	2851	18	FSM	ENSMUSG00000021948.18	ENSMUST00000112211.9	2851	18	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_8	28.1631431086409	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGGCTGTGGGGACATT	5423	False	NA	-5	True	AATAAA	-15	NA	30348165	30317312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_30317983_30320674_30320804_30321274_30321464_30321566_30321706_30323125_30323189_30323716_30323809_30323989_30324164_30324270_30324372_30324615_30324785_30326063_30326165_30327396_30327527_30327772_30327859_30329119_30329152_30329244_30329408_30329564_30329626_30331058_30331259_30332144_30332268_30347936
transcript_27205.known	chr14	-	2777	18	FSM	ENSMUSG00000021948.18	ENSMUST00000112210.11	2777	18	0	0	0	0	multi-exon	TRUE	canonical	3	76	junction_17	15.936508975905	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGCTGTGGGGACATTTA	5421	False	NA	-3	True	AATAAA	-17	NA	30348167	30317310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_30317983_30320674_30320804_30321274_30321464_30321566_30321706_30323125_30323189_30323716_30323809_30323989_30324164_30324270_30324372_30324693_30324785_30326063_30326165_30327396_30327527_30327772_30327859_30329119_30329152_30329244_30329408_30329564_30329626_30331058_30331259_30332144_30332268_30347936
transcript_27209.known	chr14	+	2347	13	FSM	ENSMUSG00000052395.18	ENSMUST00000228686.2	2347	13	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_8	13.9351175093718	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTGTCTTTCCCTGTGTC	NA	False	NA	NA	False	NA	NA	NA	30376363	30413274	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_30376433_30380265_30380352_30382153_30382271_30383227_30383418_30385034_30385137_30388635_30388774_30396126_30396206_30398806_30398865_30399643_30399775_30401187_30401333_30404707_30404814_30411661_30411912_30412398
transcript_27214.nnic	chr14	+	2305	12	NNC	ENSMUSG00000052395.18	novel	2387	13	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	15.7962230028898	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTGTCTTTCCCTGTGTC	NA	False	NA	NA	False	NA	NA	NA	30376304	30413274	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_30376433_30380265_30380352_30382153_30382271_30383227_30383418_30385034_30385137_30388635_30388774_30396126_30396206_30399686_30399775_30401187_30401333_30404707_30404814_30411661_30411912_30412398
transcript_27218.known	chr14	+	3742	8	FSM	ENSMUSG00000006526.14	ENSMUST00000006701.8	3742	8	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_2	11.5387545750335	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACATGGTGGTTGCTTTTTT	NA	False	NA	NA	False	AATAAA	-32	NA	30547546	30599167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_30547848_30584836_30584886_30586385_30586482_30588579_30588702_30592707_30592821_30593437_30593516_30594506_30594657_30596334
transcript_27220.known	chr14	+	1236	3	FSM	ENSMUSG00000042485.8	ENSMUST00000040715.8	1236	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCGGTTTCCCATCATGC	4506	False	NA	NA	False	NA	NA	NA	30601156	30603567	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_30601573_30602573_30602707_30602880
transcript_27224.known	chr14	+	1317	6	FSM	ENSMUSG00000021918.11	ENSMUST00000227199.2	1317	6	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_5	7.98999374217527	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTATTTAAAAGTATTTTAT	NA	False	NA	NA	False	GATAAA	-13	NA	30673472	30686275	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_30673676_30675759_30676027_30678837_30679036_30679218_30679327_30681097_30681253_30685889
transcript_27225.known	chr14	+	1252	5	FSM	ENSMUSG00000021918.11	ENSMUST00000226833.2	1252	5	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_4	6.25999201277446	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATGGCTCAGTGATTAAG	NA	False	NA	NA	False	NA	NA	NA	30673434	30681535	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_30673676_30675759_30676027_30678837_30679036_30679218_30679327_30681097
transcript_27233.known	chr14	+	1498	10	FSM	ENSMUSG00000021916.17	ENSMUST00000168584.9	1498	10	0	0	0	0	multi-exon	TRUE	canonical	3	45	junction_1	28.2055944017416	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTATTTGCTTCCCCATTT	3526	False	NA	8	True	AATAAA	-19	NA	30723356	30733947	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_30723386_30728415_30728470_30728589_30728689_30730610_30730825_30731691_30731810_30732037_30732123_30732253_30732367_30732820_30732988_30733077_30733191_30733441
transcript_27235.known	chr14	+	2018	10	FSM	ENSMUSG00000021916.17	ENSMUST00000022476.9	2018	10	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	32.2321823686655	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATTTGCTTCCCCATTTT	3576	False	NA	9	True	AATAAA	-20	NA	30723406	30733948	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_30723955_30728415_30728470_30728589_30728689_30730610_30730825_30731691_30731810_30732037_30732123_30732253_30732367_30732820_30732988_30733077_30733191_30733441
transcript_2724.known	chr1	-	2059	12	FSM	ENSMUSG00000026205.9	ENSMUST00000027405.6	2059	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.287479787288034	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTCAAGGCTTCTTGAATG	NA	False	NA	NA	False	AATAAA	-20	NA	75110534	75102184	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_75102663_75102985_75103082_75105116_75105285_75105547_75105654_75106041_75106296_75108304_75108420_75108795_75108917_75109242_75109425_75109594_75109672_75109838_75109937_75110044_75110203_75110328
transcript_2725.known	chr1	-	2429	10	FSM	ENSMUSG00000033159.15	ENSMUST00000041213.12	2429	10	0	0	0	0	multi-exon	TRUE	canonical	3	17	junction_9	47.8820567438857	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGCCTGGCCTTTTCCTTC	9308	False	NA	-16	True	AATAAA	-14	NA	75119341	75112414	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_75113577_75113969_75114088_75114398_75114461_75115990_75116120_75116202_75116324_75116464_75116547_75117541_75117651_75118059_75118148_75118701_75119205_75119286
transcript_27252.known	chr14	-	1241	2	FSM	ENSMUSG00000021917.17	ENSMUST00000226290.2	1241	2	0	0	0	0	multi-exon	FALSE	canonical	3	1787	junction_1	0	312	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACATTTGTTTTCTTTT	NA	False	NA	-6	True	AATAAA	-15	NA	30723326	30721784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_30722861_30723161
transcript_27253.known	chr14	+	1692	8	FSM	ENSMUSG00000021916.17	ENSMUST00000228255.2	1692	8	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_6	42.5992239078486	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGACCTATTTGCTTCCCCA	8585	False	NA	5	True	AATAAA	-16	NA	30728415	30733944	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_30728470_30728589_30728689_30730610_30730825_30731691_30732123_30732253_30732367_30732820_30732988_30733079_30733191_30733441
transcript_2727.nic	chr1	-	1947	9	NIC	ENSMUSG00000033159.15	novel	2429	10	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_8	50.7222830716442	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGCCTGGCCTTTTCCTTC	9287	False	NA	-16	True	AATAAA	-14	NA	75119362	75112414	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_75113577_75113969_75114088_75114398_75114461_75115990_75116120_75116202_75116324_75116464_75116547_75117541_75117651_75118059_75118148_75119286
transcript_27276.known	chr14	-	1947	15	FSM	ENSMUSG00000042354.8	ENSMUST00000037739.8	1947	15	0	0	0	0	multi-exon	FALSE	canonical	3	775	junction_10	82.9678140200482	4484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	-1	True	AATAAA	-20	NA	30741109	30734389	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738412_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
transcript_27277.known	chr14	-	1765	15	FSM	ENSMUSG00000042354.8	ENSMUST00000226740.2	1765	15	0	0	0	0	multi-exon	TRUE	canonical	3	37	junction_10	235.33125806065	1512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	-1	True	AATAAA	-20	NA	30740975	30734389	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738350_30738769_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
transcript_2728.known	chr1	-	2062	8	FSM	ENSMUSG00000033159.15	ENSMUST00000190679.7	2062	8	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_4	12.6426553656215	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGGCCTTTTCCTTCTGT	6906	False	NA	-13	True	AATAAA	-17	NA	75118335	75112411	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_75113577_75113969_75114088_75114398_75114461_75115990_75116120_75116202_75116324_75116464_75116547_75117541_75117651_75118059
transcript_27280.known	chr14	-	311	2	FSM	ENSMUSG00000058351.12	ENSMUST00000049732.11	311	2	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_1	0	1222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGATTTCAGCCATTTT	NA	False	NA	-11	True	AATAAA	-18	NA	30850795	30846461	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_30846567_30850589
transcript_27281.known	chr14	-	426	2	FSM	ENSMUSG00000058351.12	ENSMUST00000090205.5	426	2	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	0	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAATAAAAATATTTTAA	NA	False	NA	NA	False	NA	NA	NA	30850860	30846635	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_30846791_30850589
transcript_27284.known	chr14	+	1848	14	FSM	ENSMUSG00000071547.5	ENSMUST00000227096.2	1848	14	0	0	0	0	multi-exon	FALSE	canonical	3	528	junction_7	36.4029064448587	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCTGCTTCATTCCAGCT	NA	False	NA	20	True	AATAAA	-22	NA	30853009	30861081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_30853334_30856695_30856881_30856986_30857062_30857294_30857351_30857450_30857545_30857642_30857772_30857874_30857936_30858021_30858125_30858224_30858327_30858552_30858635_30860080_30860168_30860288_30860430_30860565_30860631_30860737
transcript_27285.known	chr14	-	2780	14	FSM	ENSMUSG00000021910.16	ENSMUST00000172142.8	2780	14	0	0	0	0	multi-exon	TRUE	canonical	3	57	junction_1	267.283529621824	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCACATCTTTTTCCTTT	9296	False	NA	3	True	AATAAA	-20	NA	30928783	30905269	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_30906355_30906898_30907008_30907268_30907383_30908715_30908845_30909015_30909202_30909606_30909676_30910595_30910752_30911687_30911784_30912952_30913049_30913341_30913506_30914537_30914587_30925183_30925367_30926398_30926483_30928523
transcript_27286.known	chr14	-	2415	11	FSM	ENSMUSG00000021910.16	ENSMUST00000165981.8	2415	11	0	0	0	0	multi-exon	FALSE	canonical	3	935	junction_6	81.5207948930824	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAGAAAGAAAGAAAA	9422	False	NA	NA	False	AATGAA	-35	NA	30928657	30907646	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_30908845_30909015_30909202_30909606_30909676_30910595_30910752_30911687_30911784_30912952_30913049_30913341_30913506_30914537_30914587_30925183_30925367_30926398_30926483_30928523
transcript_27288.nnic	chr14	+	899	6	NNC	ENSMUSG00000091898.9	novel	721	6	NA	NA	-3203	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.632455532033676	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTTTCCTGGGGTCAC	NA	False	NA	NA	False	AATAAA	-31	NA	30927065	30933686	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_30927311_30931759_30931791_30932016_30932164_30932520_30932636_30933236_30933374_30933462
transcript_27290.known	chr14	+	721	6	FSM	ENSMUSG00000091898.9	ENSMUST00000169169.8	721	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.748331477354788	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTTTCCTGGGGTCAC	NA	False	NA	NA	False	AATAAA	-31	NA	30930268	30933686	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_30930336_30931759_30931791_30932016_30932164_30932520_30932636_30933236_30933374_30933462
transcript_27292.nnic	chr14	-	617	4	NNC	ENSMUSG00000021910.16	novel	1763	3	NA	NA	-8	5525	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	532.482863574031	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAACTCTCTGTGTTTTC	9413	False	NA	NA	False	ATTAAA	-16	NA	30928666	30917375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_30917583_30925183_30925367_30926398_30926483_30928523
transcript_27294.known	chr14	-	1763	3	FSM	ENSMUSG00000021910.16	ENSMUST00000171735.2	1763	3	0	0	0	0	multi-exon	FALSE	canonical	3	1094	junction_1	67.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAATCAAGC	9421	False	NA	NA	False	NA	NA	NA	30928658	30923822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_30925367_30926398_30926483_30928523
transcript_27295.nic	chr14	+	435	2	ISM	ENSMUSG00000091898.9	ENSMUST00000169169.8	721	6	2894	0	2874	0	3prime_fragment	FALSE	canonical	1	2	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTTTCCTGGGGTCAC	NA	False	NA	NA	False	AATAAA	-31	NA	30933162	30933686	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_+_30933374_30933462
transcript_27296.known	chr14	-	2084	11	FSM	ENSMUSG00000021902.8	ENSMUST00000022459.5	2084	11	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	8.85945822271317	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGGTCTCCTTGTGAATT	NA	False	NA	-3	True	AATAAA	-14	NA	30973274	30959651	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_30960111_30960293_30960440_30961076_30961194_30961587_30961695_30962230_30962391_30962815_30962941_30963682_30963785_30969999_30970092_30970951_30971005_30971564_30971675_30972661
transcript_27297.known	chr14	-	1971	10	FSM	ENSMUSG00000021902.8	ENSMUST00000226565.2	1971	10	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	5.27280467453541	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTTGTGAATTGGCTCT	NA	False	NA	3	True	AATAAA	-20	NA	30973272	30959645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_30960111_30960293_30960440_30961587_30961695_30962230_30962391_30962815_30962941_30963682_30963785_30969999_30970092_30970951_30971005_30971564_30971675_30972661
transcript_27298.known	chr14	-	1382	9	FSM	ENSMUSG00000021902.8	ENSMUST00000228930.2	1382	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	10.3892973775901	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCGTGCCAACAGTGGAAT	NA	False	NA	NA	False	GGGGCT	-30	NA	30972965	30959767	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_30960111_30960293_30960440_30961587_30961695_30962815_30962941_30963682_30963785_30969999_30970092_30970951_30971005_30971564_30971675_30972661
transcript_273.known	SIRV3	-	589	3	FSM	SIRV3C	SIRV310	589	3	0	0	0	0	multi-exon	FALSE	canonical	3	1245	junction_2	66	9670	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCTTGGTTTTGGGTACT	NA	False	NA	NA	False	NA	NA	NA	9914	8759	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV3_-_8967_9189_9325_9667
transcript_2730.known	chr1	+	2561	9	FSM	ENSMUSG00000049339.17	ENSMUST00000097694.11	2561	9	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_6	8.45576726264388	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGTCTGCCTGCTTGTC	NA	False	NA	15	True	AATAAA	-22	NA	75119429	75124557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_75119773_75120012_75120120_75120566_75120598_75120947_75121084_75121265_75121351_75121603_75121748_75121902_75121998_75122323_75122460_75123073
transcript_27305.nnic	chr14	-	806	4	NNC	ENSMUSG00000021902.8	novel	2084	11	NA	NA	-209	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	12.675435561221	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGGTCTCCTTGTGAATT	NA	False	NA	-3	True	AATAAA	-14	NA	30962160	30959651	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_30960111_30960293_30960440_30961587_30961695_30962066
transcript_27309.known	chr14	+	3460	17	FSM	ENSMUSG00000021901.11	ENSMUST00000022458.11	3460	17	0	0	0	0	multi-exon	TRUE	canonical	3	305	junction_12	31.9899886683318	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGAGGTCGGTAGGCTGG	NA	False	NA	25	True	AATAAA	-32	NA	30973406	30981901	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_30973612_30973706_30973737_30973856_30973912_30974884_30975018_30975412_30975533_30975989_30976052_30976123_30976267_30976517_30976597_30977042_30977167_30977469_30977618_30978067_30978253_30978617_30978749_30979245_30979725_30979837_30979999_30980240_30980334_30980414_30980488_30980662
transcript_2731.known	chr1	+	1206	10	FSM	ENSMUSG00000026197.13	ENSMUST00000160439.8	1206	10	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	30.0361921605614	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGAGTGCTGTTTCTTTTTC	2032	False	NA	16	True	AGTAAA	-22	NA	75145289	75148273	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_75145352_75145474_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147879
transcript_27314.nic	chr14	+	692	4	ISM	ENSMUSG00000021901.11	ENSMUST00000188453.2	814	9	-117	1795	13	328	5prime_fragment	FALSE	canonical	3	401	junction_2	20.7417989148054	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAGGATGTTGACATCTT	NA	False	NA	NA	False	AATAAA	-22	NA	30973419	30975299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_+_30973612_30973706_30973737_30973856_30973912_30974884
transcript_27315.known	chr14	+	3648	21	FSM	ENSMUSG00000021893.15	ENSMUST00000022451.14	3648	21	0	0	0	0	multi-exon	TRUE	canonical	3	214	junction_6	22.7354348979737	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGTAGTTTAATGTCCAG	NA	False	NA	15	True	AATAAA	-20	NA	31058594	31093941	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_31058941_31061991_31062101_31066398_31066557_31067415_31067484_31069614_31069816_31071755_31071843_31074323_31074451_31076051_31076138_31077221_31077316_31080562_31080710_31081163_31081271_31082081_31082203_31085435_31085581_31086404_31086505_31087412_31087549_31088124_31088201_31090012_31090159_31091154_31091218_31091677_31091809_31092658_31092752_31092834
transcript_2732.nic	chr1	+	1113	10	NIC	ENSMUSG00000026197.13	novel	1206	10	NA	NA	-13	-1	combination_of_known_junctions	FALSE	canonical	3	41	junction_9	47.0130005660373	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTATGAGTGCTGTTTCT	2019	False	NA	11	True	AGTAAA	-17	NA	75145276	75148268	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_75145352_75145474_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147980
transcript_27320.known	chr14	+	4918	6	FSM	ENSMUSG00000021890.7	ENSMUST00000022446.7	4918	6	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_4	16.2357629940819	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAAGAAT	5602	False	NA	NA	False	NA	NA	NA	31216355	31231815	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_31217329_31219665_31219761_31222076_31222214_31224219_31224411_31226243_31226478_31228527
transcript_27322.known	chr14	-	3946	6	FSM	ENSMUSG00000021891.9	ENSMUST00000055303.5	3946	6	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_5	24.3359815910516	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTGTTTCTTGATGTCTT	NA	False	NA	NA	False	NA	NA	NA	31216997	31198776	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_31201768_31204747_31204890_31209527_31209699_31214278_31214414_31215553_31215922_31216858
transcript_27326.nic	chr14	-	1074	6	NIC	ENSMUSG00000021891.9	novel	2388	5	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	3	junction_1	111.748646524242	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGACCTCTTTATATGT	NA	False	NA	NA	False	NA	NA	NA	31217011	31203305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_-_31203411_31204747_31204890_31209527_31209699_31214278_31214414_31215553_31215922_31216858
transcript_27329.known	chr14	-	793	5	FSM	ENSMUSG00000021891.9	ENSMUST00000228181.2	793	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	108.841628065736	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTTATGAAGAAGTGGTGA	NA	False	NA	NA	False	NA	NA	NA	31216949	31201739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_31201768_31209527_31209699_31214278_31214414_31215553_31215922_31216858
transcript_27331.known	chr14	-	1027	5	FSM	ENSMUSG00000021891.9	ENSMUST00000227595.2	1027	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	105.354164606816	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTGCATGTGTTATTTT	NA	False	NA	NA	False	NA	NA	NA	31216978	31201541	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_31201768_31204747_31204890_31209527_31209699_31215553_31215922_31216858
transcript_27333.known	chr14	-	2388	5	FSM	ENSMUSG00000021891.9	ENSMUST00000228727.2	2388	5	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_4	24.3823706804732	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAGACCTCTTTATATGTA	NA	False	NA	NA	False	NA	NA	NA	31216987	31203304	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_31204890_31209527_31209699_31214278_31214414_31215553_31215922_31216858
transcript_27338.known	chr14	+	627	3	FSM	ENSMUSG00000021890.7	ENSMUST00000228952.2	627	3	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_1	2.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTACATTTTTTTCAAAT	6399	False	NA	NA	False	NA	NA	NA	31217152	31222432	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_31217329_31219665_31219761_31222076
transcript_2734.nic	chr1	+	1212	10	NIC	ENSMUSG00000026197.13	novel	1206	10	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_1	43.344727846634	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTATGAGTGCTGTTTCTT	2019	False	NA	12	True	AGTAAA	-18	NA	75145276	75148269	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_75145352_75145477_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147879
transcript_27341.known	chr14	-	2644	17	FSM	ENSMUSG00000021884.19	ENSMUST00000022437.16	2644	17	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_9	6.10199762372946	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGATTTTCCCCAGTACT	6945	False	NA	NA	False	NA	NA	NA	31362921	31329155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_31330001_31332058_31332246_31336160_31336269_31337319_31337479_31338316_31338472_31340928_31341031_31341801_31341886_31342959_31343066_31344795_31344932_31348296_31348410_31351989_31352085_31352917_31352996_31354852_31354926_31356155_31356237_31357700_31357742_31362450_31362556_31362745
transcript_27342.nic	chr14	-	1927	17	NIC	ENSMUSG00000021884.19	novel	2644	17	NA	NA	8	116	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	13.265910259006	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGTTTTGTTTTGTTTT	6631	False	NA	NA	False	AGTAAA	-32	NA	31363235	31329809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_-_31330001_31332058_31332246_31336160_31336269_31337319_31337479_31338316_31338472_31340928_31341031_31341801_31341886_31342959_31343066_31344795_31344932_31348296_31348410_31351989_31352085_31352917_31352996_31354852_31354926_31356155_31356237_31357700_31357742_31362450_31362556_31363122
transcript_27343.known	chr14	-	1699	16	FSM	ENSMUSG00000021884.19	ENSMUST00000127204.9	1699	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	13.3789220625413	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACTACTTGATGGTTAT	6997	False	NA	NA	False	NA	NA	NA	31362869	31329967	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_31330001_31332058_31332246_31336160_31336269_31337319_31337479_31338316_31338472_31340928_31341031_31341801_31341886_31342959_31343066_31344795_31344932_31348296_31348410_31351989_31352085_31352917_31352996_31354852_31354926_31357700_31357742_31362450_31362556_31362745
transcript_2735.nic	chr1	+	1110	10	NIC	ENSMUSG00000026197.13	novel	1206	10	NA	NA	-13	-1	combination_of_known_junctions	FALSE	canonical	3	39	junction_1	55.5417760689095	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTATGAGTGCTGTTTCT	2019	False	NA	11	True	AGTAAA	-17	NA	75145276	75148268	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_75145352_75145477_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147980
transcript_27354.nic	chr14	-	1078	6	ISM	ENSMUSG00000021884.19	ENSMUST00000165955.8	1500	14	21629	-158	-4938	116	3prime_fragment	FALSE	canonical	3	47	junction_3	3.07245829914744	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGTTTTGTTTTGTTTT	NA	False	NA	NA	False	AGTAAA	-32	NA	31341206	31329809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_31330001_31332058_31332246_31336160_31336269_31337319_31337479_31338316_31338472_31340928
transcript_27355.known	chr14	+	2324	4	FSM	ENSMUSG00000021900.11	ENSMUST00000090147.7	2324	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	7.40870359029762	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAATTATTCTGTCTGA	NA	False	NA	NA	False	AAAACA	-6	NA	31363013	31390536	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_31363093_31384026_31384283_31387838_31387989_31388697
transcript_27356.nic	chr14	-	758	4	ISM	ENSMUSG00000021884.19	ENSMUST00000155210.8	918	6	-346	3593	-6	1337	5prime_fragment	FALSE	canonical	3	48	junction_3	2.49443825784929	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTAATGTGTCTTTGCA	6617	False	NA	NA	False	AATGAA	-20	NA	31363249	31356128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_31356237_31357700_31357742_31362450_31362556_31362745
transcript_27358.known	chr14	+	689	3	FSM	ENSMUSG00000021900.11	ENSMUST00000128014.2	689	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	7.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGCTAACATCCACCACC	NA	False	NA	NA	False	NA	NA	NA	31362984	31389128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_31363093_31387838_31387989_31388697
transcript_27367.known	chr14	+	2376	8	FSM	ENSMUSG00000021906.15	ENSMUST00000022462.14	2376	8	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_6	23.2422908000191	390	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATGTTTAATGTTTCAG	NA	False	NA	20	True	AATACA	-19	NA	31807369	31825159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_31808011_31813592_31813717_31814024_31814089_31817321_31817429_31818443_31818586_31821345_31821589_31822942_31823052_31824213
transcript_27379.known	chr14	-	591	3	FSM	ENSMUSG00000021905.15	ENSMUST00000167796.2	591	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	281	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGAGTGTCTTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	31807649	31804828	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_31805204_31806863_31806939_31807508
transcript_27380.known	chr14	-	3079	3	FSM	ENSMUSG00000021905.15	ENSMUST00000112001.9	3079	3	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_2	283	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCATGTTTTCTTGAAG	NA	False	NA	-6	True	AATAAA	-13	NA	31807566	31802525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_31805204_31806863_31807065_31807366
transcript_27381.known	chr14	-	809	2	FSM	ENSMUSG00000021905.15	ENSMUST00000124303.9	809	2	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	0	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCAGGAGTCCCAGGCAG	NA	False	NA	NA	False	NA	NA	NA	31807686	31804714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_31805204_31807366
transcript_27382.known	chr14	-	2953	3	FSM	ENSMUSG00000021905.15	ENSMUST00000067955.12	2953	3	0	0	0	0	multi-exon	FALSE	canonical	3	570	junction_1	6	2800	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCATGTTTTCTTGAAG	NA	False	NA	-6	True	AATAAA	-13	NA	31807566	31802525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_31805204_31806863_31806939_31807366
transcript_27383.known	chr14	-	751	2	FSM	ENSMUSG00000021905.15	ENSMUST00000144149.2	751	2	0	0	0	0	multi-exon	FALSE	canonical	3	570	junction_1	0	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATCCTGAGTGTCTTTTA	NA	False	NA	NA	False	NA	NA	NA	31807243	31804832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_31805204_31806863
transcript_27384.known	chr14	-	1057	4	FSM	ENSMUSG00000021905.15	ENSMUST00000022461.11	1057	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	271.573194553513	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGTTTTCTTGAAGCTT	NA	False	NA	-3	True	AATAAA	-16	NA	31807566	31802522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_31803227_31805125_31805204_31806863_31806939_31807366
transcript_27385.known	chr14	-	486	2	FSM	ENSMUSG00000021905.15	ENSMUST00000112000.2	486	2	0	0	0	0	multi-exon	FALSE	canonical	3	582	junction_1	0	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTGGAAAGGGCAATAAAGA	NA	False	NA	NA	False	NA	NA	NA	31807566	31806652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_31806939_31807366
transcript_27387.known	chr14	+	4065	10	FSM	ENSMUSG00000056234.16	ENSMUST00000163336.8	4065	10	0	0	0	0	multi-exon	TRUE	canonical	3	533	junction_6	51.0289194210886	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAAAGCTATCACTTT	NA	False	NA	NA	False	NA	NA	NA	31881821	31901812	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_31881968_31892704_31892860_31894259_31894401_31894563_31894653_31894845_31894955_31895357_31895448_31896346_31896491_31897895_31898913_31899189_31899331_31899779
transcript_27389.known	chr14	+	3343	10	FSM	ENSMUSG00000056234.16	ENSMUST00000111994.10	3343	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	198.662813783171	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCAGTTGTGTTTGTGTT	NA	False	NA	-2	True	ATTAAA	-13	NA	31887747	31901204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_31887780_31892704_31892860_31894259_31894401_31894563_31894653_31894845_31894955_31895357_31895448_31896346_31896491_31897895_31898913_31899189_31899331_31899779
transcript_2739.known	chr1	+	1285	9	FSM	ENSMUSG00000026197.13	ENSMUST00000161106.8	1285	9	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	45.8732969711138	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTATGAGTGCTGTTTCTT	2032	False	NA	12	True	AGTAAA	-18	NA	75145289	75148269	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_75145352_75145477_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147398_75147619_75147693_75147879
transcript_27398.known	chr14	-	1173	7	FSM	ENSMUSG00000013701.14	ENSMUST00000013845.13	1173	7	0	0	0	0	multi-exon	FALSE	canonical	3	3717	junction_4	299.373048590253	25538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTATCTCCATTTAATA	NA	False	NA	NA	False	AATAAA	-40	NA	31923855	31902118	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_31902628_31911100_31911212_31913298_31913358_31915359_31915445_31915810_31915905_31920925_31920985_31923599
transcript_27399.known	chr14	-	777	4	FSM	ENSMUSG00000013701.14	ENSMUST00000170331.8	777	4	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	1998.03753718492	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTCTCCAAATTCAGGCCA	NA	False	NA	NA	False	NA	NA	NA	31923826	31902247	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_31902628_31911100_31911212_31920925_31920985_31923599
transcript_27401.nic	chr14	+	3807	18	NIC	ENSMUSG00000021911.17	novel	4413	18	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	1	134	junction_15	101.735663996062	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCATGCCACTTATATTT	NA	False	NA	15	True	AATAAA	-28	NA	31923901	32019177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_+_31924143_31930113_31930181_31930668_31931632_31932411_31932596_31936280_31936404_31936523_31936608_31939616_31939692_31960487_31960581_31964145_31964304_31971973_31972054_31976492_31976554_31980034_31980111_31984640_31984789_31993586_31993666_31996806_31996916_32006055_32006162_32017155_32017285_32018146
transcript_27402.known	chr14	+	4413	18	FSM	ENSMUSG00000021911.17	ENSMUST00000022470.15	4413	18	0	0	0	0	multi-exon	FALSE	canonical	1	134	junction_15	83.8243756407233	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTGTTAGATGCTCTGA	NA	False	NA	NA	False	AATAAA	-23	NA	31923905	32019507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_31924423_31930113_31930181_31930668_31931632_31932411_31932596_31936280_31936404_31936523_31936608_31939616_31939692_31960487_31960581_31964145_31964304_31971973_31972054_31976492_31976554_31980034_31980111_31984640_31984789_31993586_31993666_31996806_31996916_32006055_32006162_32017155_32017285_32018146
transcript_27415.known	chr14	-	391	2	FSM	ENSMUSG00000090459.2	ENSMUST00000169975.2	391	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGTCATTGACAAAGTTT	NA	False	NA	-13	True	ATTAAA	-17	NA	32016931	32014880	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_32015223_32016882
transcript_27416.known	chr14	+	804	3	FSM	ENSMUSG00000021911.17	ENSMUST00000171279.2	804	3	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	113.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATGACAACAAATTGA	NA	False	NA	NA	False	NA	NA	NA	31923927	31931190	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_31924143_31930113_31930181_31930668
transcript_27418.known	chr14	-	1833	2	FSM	ENSMUSG00000115691.2	ENSMUST00000226980.2	1833	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	195	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32039942	32025618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_32027353_32039843
transcript_27420.known	chr14	+	3723	24	FSM	ENSMUSG00000021913.9	ENSMUST00000228529.2	3723	24	0	0	0	0	multi-exon	TRUE	canonical	3	463	junction_11	40.4855688541514	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTGGCCTCCTTTCCTA	NA	False	NA	12	True	AATAAA	-18	NA	32043975	32070108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
transcript_27427.known	chr14	+	1118	2	FSM	ENSMUSG00000097794.3	ENSMUST00000180662.3	1118	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAACAAAGAAACTTTGT	NA	False	NA	NA	False	AAAAAG	-1	NA	32186998	32205505	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_32187241_32204629
transcript_27431.nic	chr14	+	1164	2	ISM	ENSMUSG00000041673.13	ENSMUST00000120866.8	1231	3	3736	0	-131	0	3prime_fragment	FALSE	canonical	3	9	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTTGGACTATGGTTTGG	NA	False	NA	NA	False	CATAAA	-14	NA	32717090	32731353	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_+_32717266_32730364
transcript_27434.known	chr14	-	1528	12	FSM	ENSMUSG00000021936.15	ENSMUST00000111944.10	1528	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.11753239990586	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCAGTGGTCATATTTTT	NA	False	NA	NA	False	TTTAAA	-4	NA	33169099	33104061	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_33104277_33105830_33105909_33108518_33108583_33109128_33109254_33110756_33110940_33112629_33112702_33114898_33115065_33124580_33124720_33124821_33124881_33130004_33130135_33132812_33132982_33168971
transcript_27435.known	chr14	-	2587	12	FSM	ENSMUSG00000021936.15	ENSMUST00000022504.12	2587	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.14655787270487	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAATAGTAGCACACAGCC	NA	False	NA	NA	False	TTTAAA	-22	NA	33169102	33103005	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_33104277_33105830_33105909_33108518_33108583_33109128_33109254_33110756_33110940_33112198_33112271_33114898_33115065_33124580_33124720_33124821_33124881_33130004_33130135_33132812_33132982_33168971
transcript_27437.known	chr14	-	5756	12	FSM	ENSMUSG00000021936.15	ENSMUST00000111945.9	5756	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.11753239990586	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGAGTTCTTCATTGAAA	NA	False	NA	0	True	AATAAA	-21	NA	33169115	33099854	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_33104282_33105830_33105909_33108518_33108583_33109128_33109254_33110756_33110940_33112629_33112702_33114898_33115065_33124580_33124720_33124821_33124881_33130004_33130135_33132812_33132982_33168971
transcript_27438.known	chr14	-	1619	3	FSM	ENSMUSG00000021936.15	ENSMUST00000132379.2	1619	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	3.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGGAGTAGAAGAAACTGA	NA	False	NA	NA	False	NA	NA	NA	33169114	33128827	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_33130135_33132812_33132982_33168971
transcript_27442.known	chr14	+	1880	12	FSM	ENSMUSG00000021950.16	ENSMUST00000022519.15	1880	12	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	1.55345522642137	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGTGGATTTGTGGGG	NA	False	NA	NA	False	CATAAA	-19	NA	33807937	33822528	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_33808034_33811467_33811559_33812563_33812659_33813757_33813872_33814486_33814578_33815334_33815415_33815840_33815901_33816354_33816449_33816679_33816776_33818486_33818546_33819813_33819937_33821647
transcript_27444.known	chr14	+	468	1	FSM	ENSMUSG00000078126.5	ENSMUST00000104925.5	468	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	46349	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTGAGTCCAGATGGCT	2274	False	NA	NA	False	NA	NA	NA	33892611	33893079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_33892600_33893100
transcript_27451.known	chr14	-	3317	11	FSM	ENSMUSG00000041471.10	ENSMUST00000111917.3	3317	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_8	23.9376272842569	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTGAAGCTTTTATTAT	NA	False	NA	-14	True	AATATA	-33	NA	34032323	33958989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_33959544_33960794_33960911_33963243_33963473_33967118_33967326_33970840_33970976_33971133_33971329_33981581_33981690_33989457_33990910_33991427_33991494_34030996_34031052_34032123
transcript_2747.known	chr1	+	1316	9	FSM	ENSMUSG00000026197.13	ENSMUST00000027394.12	1316	9	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_8	17.9304210770411	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTATGAGTGCTGTTTCTT	2041	False	NA	12	True	AGTAAA	-18	NA	75145298	75148269	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147879
transcript_27475.known	chr14	-	408	3	FSM	ENSMUSG00000043681.6	ENSMUST00000052126.6	408	3	0	0	0	0	multi-exon	FALSE	canonical	3	2248	junction_2	168.5	23056	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGAGTTTACCTCTGTT	NA	False	NA	-6	True	AATAAA	-21	NA	34077390	34073837	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_34074035_34075654_34075718_34077242
transcript_27477.nnic	chr14	-	659	5	NNC	ENSMUSG00000023064.5	novel	852	5	NA	NA	350	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	10.158124826955	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTGCTTCTTCTTTGTGC	6304	False	NA	NA	False	AATAAA	-19	NA	34096396	34092230	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_34092523_34092813_34092874_34095212_34095341_34095627_34095670_34096259
transcript_27478.known	chr14	-	852	5	FSM	ENSMUSG00000023064.5	ENSMUST00000023826.5	852	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	6.72681202353685	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTGCTTCTTCTTTGTGC	5954	False	NA	NA	False	AATAAA	-19	NA	34096746	34092230	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_34092523_34092813_34092874_34095212_34095341_34095627_34095670_34096416
transcript_2748.known	chr1	-	2966	19	FSM	ENSMUSG00000026198.16	ENSMUST00000027396.15	2966	19	0	0	0	0	multi-exon	TRUE	canonical	3	123	junction_18	16.1765910736914	203	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGGCTGTGGTTTGGTTGTG	NA	False	NA	-2	True	AATAAA	-15	NA	75157036	75148360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_75148633_75148757_75148827_75148909_75149005_75149198_75149312_75149434_75149610_75150188_75150294_75150505_75150564_75150782_75150869_75150969_75151034_75151121_75151199_75151345_75151472_75151616_75151683_75152151_75152262_75152733_75152856_75153946_75154131_75154308_75154411_75154565_75154747_75155574_75155713_75156213
transcript_27481.nnic	chr14	+	910	3	Antisense	novelGene_ENSMUSG00000023064.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	9	junction_2	2	64	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGGTGGTCTCGTGCCC	1259	False	NA	-42	True	NA	NA	NA	34087276	34096866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr14_+_34087676_34088315_34088446_34096485
transcript_27483.nnic	chr14	+	1175	3	Antisense	novelGene_ENSMUSG00000023064.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	9	junction_2	2	160	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCCTCAGTGTCCCAGG	1050	False	NA	14	True	AAGAAA	-15	NA	34087067	34096922	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr14_+_34087676_34088315_34088446_34096485
transcript_27489.nnic	chr14	+	814	2	Antisense	novelGene_ENSMUSG00000023064.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	15	junction_1	0	45	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGGTGGTCTCGTGCCC	1225	False	NA	-42	True	NA	NA	NA	34087242	34096866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr14_+_34087676_34096485
transcript_27491.nnic	chr14	+	870	2	Antisense	novelGene_ENSMUSG00000023064.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	15	junction_1	0	118	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCCTCAGTGTCCCAGG	1225	False	NA	14	True	AAGAAA	-15	NA	34087242	34096922	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr14_+_34087676_34096485
transcript_27496.known	chr14	-	795	2	FSM	ENSMUSG00000021799.10	ENSMUST00000226806.2	795	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAACAAACAGGGTCTC	NA	False	NA	NA	False	NA	NA	NA	34313796	34312584	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_34313288_34313704
transcript_27497.nnic	chr14	+	530	2	Genic_Genomic	ENSMUSG00000115575.2	novel	998	1	NA	NA	277	2	multi-exon	FALSE	canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTGCAGTCAGTCCTCA	5095	False	NA	NA	False	AATAAA	-18	NA	34383940	34384663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr14_+_34384022_34384214
transcript_27498.known	chr14	+	6351	19	FSM	ENSMUSG00000041408.19	ENSMUST00000048263.14	6351	19	0	0	0	0	multi-exon	FALSE	canonical	3	756	junction_1	98.1423286185256	251	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACGTTGTCTTTAACATAAG	NA	False	NA	14	True	AATAAA	-19	NA	34395884	34469940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_34396318_34398910_34399432_34413638_34414692_34416943_34417063_34444220_34444317_34446662_34446816_34447084_34447222_34447856_34447969_34451136_34451365_34452505_34452618_34453465_34453567_34455687_34455765_34458626_34458803_34459227_34459344_34459812_34459978_34461187_34461396_34463013_34463103_34466765_34466862_34467581
transcript_27503.known	chr14	-	1100	1	FSM	ENSMUSG00000115109.2	ENSMUST00000228194.2	1100	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCGTGATCATATCTTCAC	NA	False	NA	NA	False	AATAAA	-36	NA	34492012	34490912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_34490900_34492000
transcript_27504.known	chr14	-	7334	10	FSM	ENSMUSG00000058690.15	ENSMUST00000067700.13	7334	10	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	10.4432623444526	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGTCTCCACAGCTTGT	NA	False	NA	NA	False	AATAAA	-27	NA	36690644	36596892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_36601720_36618211_36618302_36620120_36620208_36622718_36622803_36630973_36631170_36640390_36640554_36648795_36648887_36660540_36660738_36661768_36663222_36690498
transcript_27505.known	chr14	-	7509	11	FSM	ENSMUSG00000058690.15	ENSMUST00000090024.11	7509	11	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	23.4444023169711	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGTCTCCACAGCTTGT	NA	False	NA	NA	False	AATAAA	-27	NA	36690734	36596892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_36601720_36612298_36612384_36618211_36618302_36620120_36620208_36622718_36622803_36630973_36631170_36640390_36640554_36648795_36648887_36660540_36660738_36661768_36663222_36690498
transcript_27508.known	chr14	-	754	3	FSM	ENSMUSG00000096001.3	ENSMUST00000179488.3	754	3	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_2	2.5	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCCTGGAGCATCCTTGT	NA	False	NA	NA	False	AATAAA	-21	NA	36832058	36824098	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_36824649_36829330_36829412_36831935
transcript_2751.known	chr1	-	3764	16	FSM	ENSMUSG00000033124.17	ENSMUST00000040689.15	3764	16	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_15	10.0013332444563	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGGTTGTGGCATCTTTT	NA	False	NA	-2	True	AATAAA	-13	NA	75168567	75157509	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_75158576_75159235_75159382_75159537_75159761_75161099_75161218_75161332_75161512_75161696_75161946_75162309_75162490_75162594_75162749_75162833_75163583_75164328_75164471_75164588_75164751_75166206_75166272_75166755_75166800_75166946_75167079_75167466_75167522_75168467
transcript_27511.known	chr14	-	2573	9	FSM	ENSMUSG00000041028.17	ENSMUST00000042564.17	2573	9	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	1775.59757106587	2171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGCTATTGCTGTACTT	NA	False	NA	-18	True	AATAAA	-11	NA	36857096	36842780	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36856921
transcript_2752.known	chr1	+	2739	13	FSM	ENSMUSG00000026199.18	ENSMUST00000152233.9	2739	13	0	0	0	0	multi-exon	FALSE	canonical	2	42	junction_4	25.5582124222768	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTGTGTACTTACAGTC	44	False	NA	19	True	AATAAA	-15	NA	75168803	75176031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_75169322_75170821_75170929_75171484_75171588_75171706_75171901_75172243_75172357_75172444_75172593_75172796_75173026_75173157_75173314_75174287_75174769_75174908_75175021_75175120_75175289_75175423_75175510_75175707
transcript_27521.known	chr14	-	3188	9	FSM	ENSMUSG00000041028.17	ENSMUST00000165649.4	3188	9	0	0	0	0	multi-exon	FALSE	canonical	3	4955	junction_4	366.305861780835	7645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACTTAGTTGGGTAGTGG	NA	False	NA	NA	False	AATAAA	-25	NA	36857209	36842048	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
transcript_27522.known	chr14	-	601	4	FSM	ENSMUSG00000041028.17	ENSMUST00000223921.2	601	4	0	0	0	0	multi-exon	FALSE	canonical	3	5046	junction_1	285.925786797126	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCATTAGTCATAGATTTA	NA	False	NA	NA	False	NA	NA	NA	36857229	36853354	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_36853607_36855127_36855228_36855589_36855761_36857151
transcript_27525.known	chr14	-	1597	8	FSM	ENSMUSG00000037833.15	ENSMUST00000096000.4	1597	8	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	5.69998209807429	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCCCCTCCTCTTTGGA	NA	False	NA	NA	False	NA	NA	NA	40615223	40537824	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_40537918_40542571_40542793_40562181_40562307_40564330_40564548_40582548_40582697_40594486_40594635_40596036_40596197_40614738
transcript_27532.nnic	chr14	-	991	5	NNC	ENSMUSG00000037833.15	novel	1150	4	NA	NA	-167	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	11.0312057364551	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGTTGCCAATAATTTC	NA	False	NA	NA	False	ATTAAA	-14	NA	40615390	40582339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_40582697_40594486_40594635_40596036_40596197_40614738_40614927_40615252
transcript_27533.nnic	chr14	-	1185	5	NNC	ENSMUSG00000037833.15	novel	1150	4	NA	NA	-794	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_4	7.91754381105656	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGTTGCCAATAATTTC	NA	False	NA	NA	False	ATTAAA	-14	NA	40616017	40582339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_40582697_40594486_40594635_40596036_40596197_40614738_40614927_40615685
transcript_27536.known	chr14	-	1150	4	FSM	ENSMUSG00000037833.15	ENSMUST00000225854.2	1150	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	4.71404520791032	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGTTGCCAATAATTTC	NA	False	NA	NA	False	ATTAAA	-14	NA	40615223	40582339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_40582697_40594486_40594635_40596036_40596197_40614738
transcript_27539.known	chr14	-	2475	9	FSM	ENSMUSG00000037824.7	ENSMUST00000047652.6	2475	9	0	0	0	0	multi-exon	TRUE	canonical	3	610	junction_1	26.6868413267663	456	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTGGTGATAAATTGAGC	NA	False	NA	49	True	ATTAAA	-18	NA	40688764	40628401	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_40630087_40631541_40631662_40633069_40633115_40635318_40635445_40637336_40637508_40638759_40638907_40640586_40640638_40656144_40656243_40688732
transcript_27552.known	chr14	-	1537	6	FSM	ENSMUSG00000021792.16	ENSMUST00000022317.15	1537	6	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_5	72.4911029023562	883	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAATCACCTCTGTGCACA	NA	False	NA	-22	True	AATAAA	-11	NA	40735732	40715696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_40716595_40719669_40719835_40720800_40720942_40724392_40724485_40725997_40726161_40735654
transcript_27554.known	chr14	-	1567	6	FSM	ENSMUSG00000021792.16	ENSMUST00000118466.8	1567	6	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_5	66.6111101844129	934	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAATCACCTCTGTGCACA	NA	False	NA	-22	True	AATAAA	-11	NA	40735745	40715696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_40716595_40719669_40719835_40720800_40720942_40724392_40724485_40725997_40726178_40735654
transcript_27556.known	chr14	-	450	4	FSM	ENSMUSG00000021792.16	ENSMUST00000128236.2	450	4	0	0	0	0	multi-exon	TRUE	canonical	3	17	junction_3	153.89462484296	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGATGAGCTAGGTGTCC	NA	False	NA	NA	False	NA	NA	NA	40735728	40720909	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_40720942_40724392_40724485_40725997_40726178_40735582
transcript_27574.nnic	chr14	+	2092	6	NNC	ENSMUSG00000091110.2	novel	1760	5	NA	NA	-61834	-336	at_least_one_novel_splicesite	TRUE	canonical	1	3	junction_4	8.12403840463596	19	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACC	NA	False	NA	NA	False	AATAAA	-15	NA	40938927	41010436	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_40939274_40986925_40987404_41001646_41001810_41002809_41002942_41003619_41003802_41009645
transcript_27644.nnic	chr14	+	623	3	Antisense	novelGene_ENSMUSG00000091657.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGAAGTGAAGGCTCTTA	NA	False	NA	NA	False	ATTAAA	-28	NA	41085315	41342335	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr14_+_41085450_41314264_41314409_41341990
transcript_27651.nnic	chr14	+	616	3	Antisense	novelGene_ENSMUSG00000091657.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	4.5	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGAAGTGAAGGCTCTTA	NA	False	NA	NA	False	ATTAAA	-28	NA	41308683	41342335	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr14_+_41308811_41314264_41314409_41341990
transcript_2767.nic	chr1	+	1234	4	ISM	ENSMUSG00000026199.18	ENSMUST00000127625.3	1167	5	-66	0	-25	0	intron_retention	TRUE	canonical	3	96	junction_1	11.0855260988773	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACACTTGGTTTCTTGTT	10	True	NA	NA	False	NA	NA	NA	75168769	75172178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_75169322_75170821_75170929_75171484_75171588_75171706
transcript_2768.nnic	chr1	+	1155	4	NNC	ENSMUSG00000026199.18	novel	1167	5	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	55.1019257578374	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACACTTGGTTTCTTGTT	34	False	NA	NA	False	NA	NA	NA	75168793	75172178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_75169267_75170821_75170929_75171484_75171588_75171706
transcript_2769.known	chr1	+	1093	3	FSM	ENSMUSG00000026199.18	ENSMUST00000134378.9	1093	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	58.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACACTTGGTTTCTTGTT	44	False	NA	NA	False	NA	NA	NA	75168803	75172178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_75169322_75171484_75171588_75171706
transcript_27698.nnic	chr14	+	1901	7	NNC	ENSMUSG00000052334.12	novel	1576	5	NA	NA	-4501	0	intron_retention	TRUE	canonical	3	21	junction_4	63.0672040146241	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	41761450	41825778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_41761595_41761988_41762060_41765841_41766287_41818127_41818291_41819245_41819378_41820058_41820240_41825013
transcript_277.known	SIRV3	+	1807	2	FSM	SIRV3A	SIRV302	1807	2	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_1	0	2288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTAACAGGTTCTCAAC	NA	False	NA	NA	False	NA	NA	NA	1963	7822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV3_+_2006_6057
transcript_2770.known	chr1	-	967	7	FSM	ENSMUSG00000033124.17	ENSMUST00000188430.7	967	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	15.7762127549323	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAATCTGAGATG	NA	False	NA	NA	False	NA	NA	NA	75168369	75164200	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_75164471_75164588_75164751_75166206_75166272_75166755_75166800_75166946_75167079_75167466_75167522_75168130
transcript_27700.nnic	chr14	+	1631	7	NNC	ENSMUSG00000052334.12	novel	1576	5	NA	NA	-4501	0	intron_retention	FALSE	canonical	3	21	junction_4	63.2262252198845	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	41761450	41825778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_41761595_41761988_41762060_41766111_41766287_41818127_41818291_41819245_41819378_41820058_41820240_41825013
transcript_27702.nnic	chr14	+	1600	7	NNC	ENSMUSG00000052334.12	novel	1576	5	NA	NA	-4501	0	intron_retention	FALSE	canonical	3	16	junction_2	69.184937345896	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	41761450	41825778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_41761595_41761988_41762060_41766142_41766287_41818127_41818291_41819245_41819378_41820058_41820240_41825013
transcript_27708.nnic	chr14	+	1005	4	NNC	ENSMUSG00000052334.12	novel	1576	5	NA	NA	-4501	-40010	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_3	88.8856943870422	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGAAGTGAAGGCTCTTA	NA	False	NA	NA	False	ATTAAA	-28	NA	41761450	41785766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_41761595_41761988_41762060_41765841_41766287_41785421
transcript_2771.known	chr1	+	1167	5	FSM	ENSMUSG00000026199.18	ENSMUST00000127625.3	1167	5	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_4	48.7307654362211	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACACTTGGTTTCTTGTT	76	False	NA	NA	False	NA	NA	NA	75168835	75172178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_75169322_75170821_75170929_75171484_75171588_75171706_75171937_75171937
transcript_27710.nnic	chr14	+	735	4	NNC	ENSMUSG00000052334.12	novel	1576	5	NA	NA	-4501	-40010	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_3	89.2449811847516	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGAAGTGAAGGCTCTTA	NA	False	NA	NA	False	ATTAAA	-28	NA	41761450	41785766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_41761595_41761988_41762060_41766111_41766287_41785421
transcript_27714.nnic	chr14	+	704	4	NNC	ENSMUSG00000052334.12	novel	1576	5	NA	NA	-4501	-40010	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_3	98.9983164840022	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGAAGTGAAGGCTCTTA	NA	False	NA	NA	False	ATTAAA	-28	NA	41761450	41785766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_41761595_41761988_41762060_41766142_41766287_41785421
transcript_27717.nnic	chr14	+	1693	3	NNC	ENSMUSG00000052334.12	novel	1576	5	NA	NA	-4501	-58457	at_least_one_novel_splicesite	FALSE	canonical	3	73	junction_2	76	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAATA	NA	False	NA	NA	False	NA	NA	NA	41761450	41767319	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_41761595_41761988_41762060_41765841
transcript_27719.known	chr14	+	1576	5	FSM	ENSMUSG00000052334.12	ENSMUST00000064162.11	1576	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	25.043711785596	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	41765951	41825778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_41766287_41818127_41818291_41819245_41819378_41820058_41820240_41825013
transcript_2772.known	chr1	+	1500	8	FSM	ENSMUSG00000026201.13	ENSMUST00000191108.7	1500	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	77.7888297946198	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTAGGTCAATGTGT	NA	False	NA	9	True	AATAAA	-17	NA	75187513	75190886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_75187697_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75189651_75189756_75189873_75190219_75190342_75190457
transcript_27725.nnic	chr14	+	1452	4	NNC	ENSMUSG00000094954.2	novel	1751	5	NA	NA	-37982	-336	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4.78423336480244	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	42247855	42293743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_42248212_42287840_42287973_42288667_42288850_42292961
transcript_2773.known	chr1	+	2876	8	FSM	ENSMUSG00000026201.13	ENSMUST00000027401.11	2876	8	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_4	30.7265756142723	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCCAAGTAGCGGTCTACT	NA	False	NA	NA	False	AATAAA	-13	NA	75187481	75192250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_75187697_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75189651_75189776_75189873_75190219_75190342_75190457
transcript_27736.known	chr14	+	690	2	FSM	ENSMUSG00000115262.2	ENSMUST00000226820.2	690	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTTGAAGTGAAGGCTC	NA	False	NA	NA	False	ATTAAA	-25	NA	42988860	43004144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_42988898_43003491
transcript_2775.nic	chr1	+	1494	8	NIC	ENSMUSG00000026201.13	novel	2876	8	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	65	junction_1	57.8389742195996	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTAGGTCAATGTGT	NA	False	NA	9	True	AATAAA	-17	NA	75187471	75190886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_75187669_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75189651_75189776_75189873_75190219_75190342_75190457
transcript_27758.nnic	chr14	+	1625	5	NNC	ENSMUSG00000094151.2	novel	1761	5	NA	NA	-122082	-336	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	10.7325439668328	18	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	42915241	43045109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_42915598_43038207_43038371_43039360_43039493_43040175_43040358_43044317
transcript_27770.nnic	chr14	+	1452	4	Fusion	ENSMUSG00000115262.2_ENSMUSG00000094151.2	novel	690	2	NA	NA	-309	-336	multi-exon	FALSE	canonical	0	0	junction_1	11.6714276000077	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	42988551	43045109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr14_+_42988898_43039360_43039493_43040175_43040358_43044317
transcript_27791.nnic	chr14	+	1263	3	NNC	ENSMUSG00000090634.2	novel	1764	5	NA	NA	-49435	-336	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	2	11	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	43066670	43123920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_43067007_43118142_43118275_43123125
transcript_27801.nnic	chr14	+	1399	5	NNC	ENSMUSG00000115483.2	novel	1591	4	NA	NA	-3342	-336	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_1	16.5283846760656	57	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	43129150	43163125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_43129304_43132676_43132821_43157302_43157435_43158114_43158297_43162337
transcript_27803.nnic	chr14	+	1415	5	NNC	ENSMUSG00000115483.2	novel	1591	4	NA	NA	-3327	-336	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	20.897069172494	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	43129165	43163125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_43129304_43132645_43132821_43157302_43157435_43158114_43158297_43162337
transcript_27805.nnic	chr14	+	1356	5	NNC	ENSMUSG00000115483.2	novel	1591	4	NA	NA	-3321	-336	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	24.3874967965144	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	43129171	43163125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_43129282_43132676_43132821_43157302_43157435_43158114_43158297_43162337
transcript_27806.nnic	chr14	+	1679	5	NNC	ENSMUSG00000115483.2	novel	1591	4	NA	NA	-3321	-336	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	21.2779228309532	226	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	43129171	43163125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_43129304_43132375_43132821_43157302_43157435_43158114_43158297_43162337
transcript_27833.nnic	chr14	+	951	3	NNC	ENSMUSG00000115483.2	novel	1188	2	NA	NA	-3342	-206	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	13	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGAAGTGAAGGCTCTTA	NA	False	NA	NA	False	ATTAAA	-28	NA	43129150	43146869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_43129304_43132676_43132821_43146215
transcript_27835.nnic	chr14	+	651	3	NNC	ENSMUSG00000115483.2	novel	1188	2	NA	NA	-3342	-206	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_2	13	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGAAGTGAAGGCTCTTA	NA	False	NA	NA	False	ATTAAA	-28	NA	43129150	43146869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_43129304_43132676_43132821_43146515
transcript_27837.nnic	chr14	+	642	3	NNC	ENSMUSG00000115483.2	novel	1188	2	NA	NA	-3342	-206	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	13.5	19	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGAAGTGAAGGCTCTTA	NA	False	NA	NA	False	ATTAAA	-28	NA	43129150	43146869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_43129304_43132676_43132821_43146524
transcript_27844.nnic	chr14	+	658	3	NNC	ENSMUSG00000115483.2	novel	1188	2	NA	NA	-3327	-206	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	7.5	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGAAGTGAAGGCTCTTA	NA	False	NA	NA	False	ATTAAA	-28	NA	43129165	43146869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_43129304_43132645_43132821_43146524
transcript_27862.nnic	chr14	+	922	3	NNC	ENSMUSG00000115483.2	novel	1188	2	NA	NA	-3321	-206	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	7	23	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGAAGTGAAGGCTCTTA	NA	False	NA	NA	False	ATTAAA	-28	NA	43129171	43146869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_43129304_43132375_43132821_43146524
transcript_27888.nnic	chr14	+	1783	8	NNC	ENSMUSG00000090788.3	novel	1387	5	NA	NA	-73759	0	at_least_one_novel_splicesite	TRUE	canonical	2	10	junction_5	47.8321896566208	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTAAGAAACTT	NA	False	NA	NA	False	AATAAA	-15	NA	43169911	43251481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_43170061_43170454_43170526_43173393_43173568_43243668_43243801_43244528_43244692_43245648_43245781_43246462_43246644_43250700
transcript_27889.nnic	chr14	+	1752	8	NNC	ENSMUSG00000090788.3	novel	1387	5	NA	NA	-73759	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_5	49.2250143810678	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTAAGAAACTT	NA	False	NA	NA	False	AATAAA	-15	NA	43169911	43251481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_43170061_43170454_43170526_43173424_43173568_43243668_43243801_43244528_43244692_43245648_43245781_43246462_43246644_43250700
transcript_27891.known	chr14	+	1387	5	FSM	ENSMUSG00000090788.3	ENSMUST00000227632.2	1387	5	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_2	8.90224690738243	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTAAGAAACTT	NA	False	NA	NA	False	AATAAA	-15	NA	43243670	43251481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_43243801_43244528_43244692_43245648_43245781_43246462_43246644_43250700
transcript_27893.nnic	chr14	+	617	3	NNC	ENSMUSG00000115483.2	novel	1188	2	NA	NA	-3317	105917	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	15	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGAAGTGAAGGCTCTTA	NA	False	NA	NA	False	ATTAAA	-28	NA	43129175	43269385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_43129304_43132676_43132821_43269040
transcript_27896.nnic	chr14	+	1910	8	NNC	ENSMUSG00000091477.2	novel	1314	4	NA	NA	-45985	-29	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	10.4315064363021	19	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCTTCACTCTTAAGAAA	NA	False	NA	NA	False	AATAAA	-13	NA	43735047	43788641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_43735407_43778540_43778627_43779598_43779685_43781120_43781231_43781959_43782123_43783111_43783244_43783926_43784109_43787849
transcript_279.known	SIRV3	-	161	1	FSM	SIRV3D	SIRV311	161	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATATAAAGATTTCGACTT	NA	False	NA	NA	False	NA	NA	NA	4762	4601	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV3_-_4600_4800
transcript_27907.nnic	chr14	+	1620	5	NNC	ENSMUSG00000091477.2	novel	1314	4	NA	NA	-45977	-29	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	10.8714074525794	25	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCTTCACTCTTAAGAAA	NA	False	NA	NA	False	AATAAA	-13	NA	43735055	43788641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_43735407_43781959_43782123_43783111_43783244_43783926_43784109_43787849
transcript_27910.nnic	chr14	+	1471	4	NNC	ENSMUSG00000091477.2	novel	1314	4	NA	NA	-45991	-29	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	7.87400787401181	40	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCTTCACTCTTAAGAAA	NA	False	NA	NA	False	AATAAA	-13	NA	43735041	43788641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_43735407_43783111_43783244_43783926_43784109_43787849
transcript_27914.nnic	chr14	+	1318	3	NNC	ENSMUSG00000091477.2	novel	1314	4	NA	NA	-45991	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	3	25	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGGTGTGGTATCACCCTA	NA	False	NA	NA	False	AATAAA	-42	NA	43735041	43788670	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_43735407_43783111_43783244_43787849
transcript_27920.nnic	chr14	+	1218	3	Fusion	ENSMUSG00000091698.9_ENSMUSG00000049235.9	novel	660	2	NA	NA	1	-349	multi-exon	FALSE	canonical	0	0	junction_1	1.5	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGATCTCCAACTCTTCA	9944	False	NA	NA	False	AATAAA	-25	NA	43935285	43993056	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr14_+_43935631_43987358_43987491_43992315
transcript_27921.known	chr14	+	1647	1	FSM	ENSMUSG00000049235.9	ENSMUST00000094051.6	1647	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	987	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGGAAGAGAAAGTGGTT	NA	False	NA	NA	False	NA	NA	NA	43951188	43952835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_43951200_43952800
transcript_27928.known	chr14	-	1418	4	FSM	ENSMUSG00000115536.2	ENSMUST00000228838.2	1418	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.942809041582063	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTCTTCACTCTTAAGAA	NA	False	NA	NA	False	AATAAA	-12	NA	44552968	44463676	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_44464468_44470160_44470264_44549379_44549821_44552885
transcript_27930.known	chr14	-	1586	5	FSM	ENSMUSG00000072574.5	ENSMUST00000227180.2	1586	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.866025403784439	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTAAGAAACTT	NA	False	NA	NA	False	AATAAA	-15	NA	44772816	44709972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_44710757_44714789_44714972_44716348_44716512_44717238_44717371_44772491
transcript_27942.known	chr14	-	5045	21	FSM	ENSMUSG00000021830.15	ENSMUST00000139526.9	5045	21	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_19	5.21152568831815	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATATAATAAATAAATAAATC	NA	False	NA	NA	False	NA	NA	NA	45456882	45370921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_45373431_45377874_45378066_45379429_45379591_45382398_45382538_45385285_45385371_45388794_45388932_45389214_45389384_45398790_45398851_45399696_45399841_45400388_45400513_45402803_45402865_45403183_45403351_45406694_45406846_45409970_45410062_45420502_45420625_45442798_45442874_45444185_45444260_45448612_45448696_45450742_45450982_45456452_45456507_45456673
transcript_27950.known	chr14	-	3691	4	FSM	ENSMUSG00000021830.15	ENSMUST00000153383.8	3691	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	5.31245915016974	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAAAAAAACCCTACGT	NA	False	NA	NA	False	NA	NA	NA	45456859	45445483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_45448696_45450742_45450982_45456452_45456507_45456673
transcript_27953.known	chr14	-	4418	16	FSM	ENSMUSG00000021831.10	ENSMUST00000022378.9	4418	16	0	0	0	0	multi-exon	FALSE	canonical	2	315	junction_8	121.531596257471	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGGTCTTTGGTCAGTT	NA	False	NA	89	True	AATAAA	-20	NA	45556029	45520543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_45523546_45525189_45525324_45525432_45525520_45529818_45529889_45530387_45530635_45531760_45531854_45531967_45531995_45533428_45533441_45536502_45536541_45537298_45537420_45539149_45539224_45539305_45539380_45541005_45541045_45542705_45542790_45543968_45544089_45555833
transcript_27966.known	chr14	+	2234	14	FSM	ENSMUSG00000021832.9	ENSMUST00000022380.9	2234	14	0	0	0	0	multi-exon	FALSE	canonical	3	1632	junction_5	93.5359944006622	5559	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATAAATGATCCAGCTAGG	NA	False	NA	NA	False	AATAAA	-39	NA	45567244	45587162	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_45567390_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45575023_45578086_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581185_45584200_45584273_45586039
transcript_27967.known	chr14	+	12974	11	FSM	ENSMUSG00000053205.10	ENSMUST00000226873.2	12974	11	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_6	62.4791165110391	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCTTGTACATTTCTTT	NA	False	NA	NA	False	AATAAA	-37	NA	45588549	45622964	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_45588987_45592402_45592436_45594169_45594224_45596715_45596814_45604055_45604117_45605138_45605176_45605763_45605804_45605877_45605929_45608475_45608549_45609841_45609936_45610968
transcript_27981.known	chr14	-	2788	6	FSM	ENSMUSG00000037722.9	ENSMUST00000046191.9	2788	6	0	0	0	0	multi-exon	FALSE	canonical	3	1091	junction_1	71.0419594324368	1614	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGATCCATCAGGTAAC	NA	False	NA	NA	False	ATTAAA	-11	NA	45626418	45613790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_45615944_45618393_45618456_45619012_45619141_45620850_45620914_45622037_45622206_45626204
transcript_27983.known	chr14	-	3293	15	FSM	ENSMUSG00000037712.18	ENSMUST00000045905.15	3293	15	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_11	31.8875575504085	802	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTCTTTTGTACTTCTG	NA	False	NA	-5	True	AATAAA	-20	NA	45767575	45696251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_45697481_45699223_45699366_45699572_45699698_45702180_45702403_45702540_45702648_45704794_45704920_45705959_45706010_45706696_45706832_45710228_45710337_45713029_45713133_45713344_45713571_45719888_45720024_45741953_45742188_45766881_45767049_45767390
transcript_27985.nnic	chr14	-	491	2	NNC	ENSMUSG00000115391.2	novel	1035	2	NA	NA	1817	-13	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCAGACTGTACACCTTAT	NA	False	NA	NA	False	ATTAAA	-20	NA	45790042	45789307	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_45789705_45789948
transcript_27988.known	chr14	+	750	2	FSM	ENSMUSG00000044285.9	ENSMUST00000227415.2	750	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1753	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACTCCAGAAAATCAAATAA	NA	False	NA	NA	False	NA	NA	NA	46321484	46322457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_46321774_46321996
transcript_27989.nnic	chr14	+	735	2	NNC	ENSMUSG00000044285.9	novel	750	2	NA	NA	-5	-15	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	1554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTCAAGAAGGTGGACTC	NA	False	NA	NA	False	AATAAA	-45	NA	46321479	46322442	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_46321631_46321858
transcript_27990.known	chr14	+	733	4	FSM	ENSMUSG00000079261.3	ENSMUST00000111826.3	733	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTGCACGTAAAGTCATA	NA	False	NA	NA	False	TATAAA	-37	NA	46616923	46621065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_46617099_46617735_46617844_46620533_46620675_46620756
transcript_27993.known	chr14	-	2064	4	FSM	ENSMUSG00000021835.16	ENSMUST00000074077.12	2064	4	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_3	6.0184900284226	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAGACCTTTCTATCTTAT	6365	False	NA	NA	False	AATAAA	-25	NA	46628126	46620976	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_46622170_46623171_46623552_46624612_46624738_46627760
transcript_27998.nic	chr14	-	1802	3	ISM	ENSMUSG00000021835.16	ENSMUST00000074077.12	2064	4	3285	0	-80	0	3prime_fragment	FALSE	canonical	3	35	junction_2	1.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAGACCTTTCTATCTTAT	9650	False	NA	NA	False	AATAAA	-25	NA	46624841	46620976	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_46622170_46623171_46623552_46624612
transcript_27999.nic	chr14	-	1615	3	ISM	ENSMUSG00000021835.16	ENSMUST00000074077.12	2064	4	3285	187	-80	0	3prime_fragment	FALSE	canonical	3	35	junction_2	1.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAGAAAGAAAGAAA	9650	False	NA	NA	False	NA	NA	NA	46624841	46621163	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_46622170_46623171_46623552_46624612
transcript_28.known	ERCC-00060	+	506	1	FSM	ERCC-00060A	DQ516763	506	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3130	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	506	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00060_+_0_500
transcript_280.known	SIRV3	+	436	3	FSM	SIRV3A	SIRV305	436	3	0	0	0	0	multi-exon	FALSE	canonical	3	1609	junction_2	828.5	8981	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGAATCTTAATAGACGATT	NA	False	NA	NA	False	NA	NA	NA	4003	6718	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV3_+_4081_4568_4780_6570
transcript_28000.known	chr14	+	344	2	FSM	ENSMUSG00000086746.3	ENSMUST00000127359.2	344	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCATCTCCTGGTATTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	46624975	46626739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_46625080_46626499
transcript_28001.known	chr14	-	517	2	FSM	ENSMUSG00000021835.16	ENSMUST00000135408.2	517	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATGTACGGGCTCCTTTT	6499	False	NA	NA	False	NA	NA	NA	46627992	46624452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_46624738_46627760
transcript_28004.known	chr14	+	917	8	FSM	ENSMUSG00000037628.11	ENSMUST00000067426.6	917	8	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_6	72.4563204099335	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCCAGCTAGACATACACT	NA	False	NA	72	True	NA	NA	NA	46997997	47009126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_46998106_46999984_47000068_47001980_47002037_47002452_47002498_47004632_47004856_47006322_47006355_47007292_47007394_47008857
transcript_28016.known	chr14	+	634	7	FSM	ENSMUSG00000037628.11	ENSMUST00000226621.2	634	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	78.2254576351089	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCAAGTTCTCCAGCATAG	NA	False	NA	2	True	AATAAA	-17	NA	46998051	47008977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_46998106_47001980_47002037_47002452_47002498_47004632_47004856_47006322_47006355_47007289_47007394_47008857
transcript_2803.known	chr1	+	691	3	FSM	ENSMUSG00000026201.13	ENSMUST00000144355.8	691	3	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_1	43	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCCCTGGTTTGGCCTTT	NA	False	NA	NA	False	CATAAA	-14	NA	75187491	75188879	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_75187697_75187883_75188059_75188568
transcript_28032.known	chr14	-	1538	5	FSM	ENSMUSG00000015759.12	ENSMUST00000015903.12	1538	5	0	0	0	0	multi-exon	FALSE	canonical	3	505	junction_4	16.1322658049017	2385	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTACATTGTCTATTTTC	NA	False	NA	NA	False	AATAAA	-31	NA	47025868	47013023	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_47014007_47016345_47016490_47017569_47017683_47021568_47021638_47025639
transcript_28036.known	chr14	-	761	6	FSM	ENSMUSG00000062014.14	ENSMUST00000226937.2	761	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	274.359326431598	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACTCCTGGGTACTGGCA	NA	False	NA	NA	False	NA	NA	NA	47059641	47048860	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_47049281_47051700_47051775_47052361_47052445_47053055_47053106_47053634_47053685_47059557
transcript_28038.known	chr14	-	280	3	FSM	ENSMUSG00000062014.14	ENSMUST00000228065.2	280	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	282	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAATGCACTGTTACTTA	NA	False	NA	-2	True	CATAAA	-15	NA	47059613	47049130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_47049281_47051700_47051775_47059557
transcript_2804.known	chr1	+	636	3	FSM	ENSMUSG00000026201.13	ENSMUST00000123825.8	636	3	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	98.5	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGCCCTGGTTTGGCCTT	NA	False	NA	NA	False	CATAAA	-13	NA	75187517	75188878	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_75187669_75187883_75188059_75188568
transcript_28040.known	chr14	-	4171	7	FSM	ENSMUSG00000062014.14	ENSMUST00000111817.8	4171	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	212.21091447478	930	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTAGTGTTTTATTTTTT	NA	False	NA	-2	True	AATAAA	-18	NA	47059699	47045605	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_47049281_47051700_47051775_47052361_47052445_47053055_47053106_47053634_47053685_47054842_47054940_47059557
transcript_28041.known	chr14	+	1324	6	FSM	ENSMUSG00000055128.16	ENSMUST00000068532.10	1324	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	10.2097992144802	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGACACTGTCTTTGTC	537	False	NA	14	True	AATAAA	-24	NA	47069581	47091650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_47069837_47077613_47077754_47083330_47083509_47083641_47083790_47090835_47090944_47091155
transcript_28042.known	chr14	+	873	4	FSM	ENSMUSG00000055128.16	ENSMUST00000133989.8	873	4	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_2	7.78888096369861	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATTTTATCCTTCTGTGG	641	False	NA	NA	False	ATTAAA	-18	NA	47069685	47084045	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_47069837_47077613_47077754_47083330_47083509_47083641
transcript_28043.known	chr14	+	419	2	FSM	ENSMUSG00000055128.16	ENSMUST00000140114.3	419	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTGTAGACGTGAAGATGA	631	False	NA	NA	False	ATTAAA	-23	NA	47069675	47077871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_47069837_47077613
transcript_28044.known	chr14	-	2775	6	FSM	ENSMUSG00000037580.11	ENSMUST00000089959.7	2775	6	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	5.3665631459995	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGTGGATGTTGTCTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	47426870	47391351	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_47393382_47394865_47394951_47396319_47396352_47403932_47403989_47406668_47406779_47426408
transcript_28045.known	chr14	-	4260	25	FSM	ENSMUSG00000037572.18	ENSMUST00000187531.8	4260	25	0	0	0	0	multi-exon	FALSE	canonical	1	98	junction_11	68.6814304516795	279	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTCTTGCTATGGTTT	NA	False	NA	0	True	AATAAA	-20	NA	47514289	47478400	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_47479270_47481259_47481399_47482441_47482570_47482743_47482915_47483289_47483334_47484837_47484892_47485242_47485356_47485452_47485671_47488216_47488349_47489374_47489490_47493560_47493718_47495977_47496116_47498796_47499039_47500895_47501081_47503130_47503316_47504437_47504631_47505528_47505671_47506112_47506220_47507591_47507685_47509592_47509689_47510323_47510375_47510568_47510681_47511369_47511522_47512200_47512313_47513977
transcript_28047.known	chr14	+	6877	2	FSM	ENSMUSG00000048379.10	ENSMUST00000065562.6	6877	2	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTGTCGTTTTTAAAGAT	NA	False	NA	NA	False	AATAAA	-28	NA	47514387	47533559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_47514679_47526973
transcript_28052.known	chr14	+	4542	4	FSM	ENSMUSG00000021840.18	ENSMUST00000166743.9	4542	4	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_2	12.2836838484589	303	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTTTCTTTGTGTATTT	9630	False	NA	7	True	AAGAAA	-18	NA	47535725	47560552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_47535863_47546023_47546046_47547871_47548571_47556868
transcript_28057.known	chr14	+	1419	6	FSM	ENSMUSG00000050335.18	ENSMUST00000142734.8	1419	6	0	0	0	0	multi-exon	TRUE	canonical	3	33	junction_1	23.7941169199447	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAGGAAATACGCTGAAT	NA	False	NA	NA	False	AATAAA	-15	NA	47611269	47623617	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_47611410_47616979_47617002_47617509_47617876_47619052_47619142_47622058_47622225_47622981
transcript_28059.known	chr14	+	1072	6	FSM	ENSMUSG00000050335.18	ENSMUST00000146468.4	1072	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	36.9247884218718	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATACCCATCGCTTTGGGG	NA	False	NA	1	True	AATAAA	-14	NA	47611420	47623251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_47611580_47616979_47617002_47617509_47617876_47619052_47619142_47622058_47622225_47622981
transcript_2806.known	chr1	+	839	2	FSM	ENSMUSG00000026201.13	ENSMUST00000139627.3	839	2	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCTATGTGAGAGATGACC	NA	False	NA	NA	False	NA	NA	NA	75187489	75188515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_75187697_75187883
transcript_28064.nic	chr14	-	2787	19	NIC	ENSMUSG00000037544.15	novel	2964	19	NA	NA	-59	0	combination_of_known_junctions	FALSE	canonical	3	64	junction_10	111.61232785134	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTTCTTCGCATTGTTA	NA	False	NA	NA	False	NA	NA	NA	47655723	47625235	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_-_47625581_47626868_47626916_47627899_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643323_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
transcript_28066.known	chr14	-	2964	19	FSM	ENSMUSG00000037544.15	ENSMUST00000043296.10	2964	19	0	0	0	0	multi-exon	FALSE	canonical	3	355	junction_12	54.7968470301389	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTTCTTCGCATTGTTA	NA	False	NA	NA	False	NA	NA	NA	47655864	47625235	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_47625581_47626868_47626916_47627899_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
transcript_28068.nic	chr14	-	2763	18	NIC	ENSMUSG00000037544.15	novel	2964	19	NA	NA	-59	0	combination_of_known_junctions	FALSE	canonical	3	105	junction_1	102.855729242771	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAAACATTCTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	47655723	47625244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_-_47625577_47627899_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
transcript_28074.known	chr14	+	664	4	FSM	ENSMUSG00000037536.15	ENSMUST00000228668.2	664	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	28.4526897771644	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCAAACCTGGGAACACG	NA	False	NA	NA	False	GGGGCT	-18	NA	47710032	47766966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_47710175_47738250_47738328_47763661_47763772_47766631
transcript_28075.known	chr14	+	2993	3	FSM	ENSMUSG00000037536.15	ENSMUST00000168833.9	2993	3	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	10.5	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGTCTGGTCTTAAAATA	NA	False	NA	10	True	AATAAA	-18	NA	47710075	47769415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_47710175_47763661_47763772_47766631
transcript_28078.known	chr14	+	2937	2	FSM	ENSMUSG00000037536.15	ENSMUST00000043112.9	2937	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGAGGTCTGGTCTTAA	NA	False	NA	6	True	AATAAA	-14	NA	47710017	47769411	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_47710175_47766631
transcript_28079.known	chr14	+	373	3	FSM	ENSMUSG00000037536.15	ENSMUST00000227162.2	373	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	19	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCAAAGCATCGTCTAGA	NA	False	NA	NA	False	NA	NA	NA	47710045	47766798	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_47710175_47738250_47738328_47766631
transcript_2808.known	chr1	+	1570	7	FSM	ENSMUSG00000026201.13	ENSMUST00000135484.8	1570	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	83.8424448328861	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTATATTTTAGGTCAATG	NA	False	NA	6	True	AATAAA	-14	NA	75187519	75190883	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_75187644_75187883_75188059_75188568_75188789_75189243_75189651_75189776_75189873_75190219_75190342_75190457
transcript_28082.nnic	chr14	-	339	3	NNC	ENSMUSG00000037526.8	novel	3729	11	NA	NA	-6182	-3096	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	2	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGCACCTGGATAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	47814288	47805916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_47806089_47813988_47814069_47814201
transcript_28083.known	chr14	-	3729	11	FSM	ENSMUSG00000037526.8	ENSMUST00000226299.2	3729	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	42.721072083926	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCTGTGTGTGTCTGTC	NA	False	NA	-4	True	AATAAA	-14	NA	47808106	47778349	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_47780601_47783084_47783171_47783247_47783339_47784697_47784816_47786375_47786606_47788704_47788943_47792016_47792099_47796630_47796674_47798077_47798141_47805642_47806089_47808025
transcript_28084.known	chr14	-	376	2	FSM	ENSMUSG00000037526.8	ENSMUST00000228784.2	376	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTTATTCCTACTTATG	NA	False	NA	NA	False	NA	NA	NA	47805861	47802820	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_47802978_47805642
transcript_2809.known	chr1	-	648	3	FSM	ENSMUSG00000096094.3	ENSMUST00000179573.2	648	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTATCTCTTCGACTGTAC	9189	False	NA	NA	False	AATAAA	-12	NA	75200298	75196738	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_75197218_75199937_75200075_75200266
transcript_28107.known	chr14	+	634	2	FSM	ENSMUSG00000021843.18	ENSMUST00000186466.3	634	2	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	0	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACATAATCTTTTTAACTC	NA	False	NA	NA	False	AAGAAA	-32	NA	47886772	47901772	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_47886847_47901212
transcript_28109.known	chr14	+	4436	41	FSM	ENSMUSG00000021843.18	ENSMUST00000190252.7	4436	41	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_40	180.470106596633	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGACTCACTCTGATTG	NA	False	NA	17	True	AATAAA	-17	NA	47886767	47974014	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47971611_47971722_47973556
transcript_2811.nnic	chr1	+	1965	11	NNC	ENSMUSG00000026203.17	novel	1855	10	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_9	13.7873130087048	182	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGGTGGCCTGTGTTCCTC	2179	False	NA	6	True	AATAAA	-16	NA	75213050	75222336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_75213234_75213495_75213593_75214098_75214209_75215923_75215978_75216151_75216275_75217535_75217629_75217814_75217918_75218052_75218124_75220101_75220306_75221206_75221235_75221437
transcript_28110.known	chr14	+	7945	43	FSM	ENSMUSG00000021843.18	ENSMUST00000187839.8	7945	43	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_1	224.493313335668	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATTTTCCTGTGGATTAC	NA	False	NA	NA	False	AATAAA	-15	NA	47885904	47977351	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_47886035_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47963927_47964012_47967796_47967881_47970683_47970780_47971611_47971722_47973556
transcript_28115.nnic	chr14	-	2084	4	NNC	ENSMUSG00000021848.17	novel	2592	6	NA	NA	-116	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	13.7194104181711	80	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGGGTCTAGTTTAATTT	NA	False	NA	-1	True	ATTAAA	-16	NA	48900445	48895133	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_48896784_48898755_48898908_48899900_48900117_48900379
transcript_28116.known	chr14	-	2144	4	FSM	ENSMUSG00000021848.17	ENSMUST00000118578.9	2144	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	16.8720676464584	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTTGGGTCTAGTTTAAT	NA	False	NA	-3	True	ATTAAA	-14	NA	48902563	48895135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_48896784_48898755_48898908_48899900_48900117_48902435
transcript_2812.known	chr1	+	1366	10	FSM	ENSMUSG00000026203.17	ENSMUST00000185403.7	1366	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	13.7041040982547	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACTTATTCCAGGGGAAG	2285	False	NA	NA	False	NA	NA	NA	75213156	75221699	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_75213234_75213495_75213593_75214098_75214209_75215751_75215978_75216151_75216275_75217535_75217629_75217814_75217918_75218052_75218124_75220101_75220306_75221437
transcript_28123.known	chr14	-	1737	3	FSM	ENSMUSG00000021848.17	ENSMUST00000122009.8	1737	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	5.5	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACCGCTCATACGGAGTC	NA	False	NA	NA	False	TTTAAA	-13	NA	48900329	48895627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_48896784_48898755_48898908_48899900
transcript_28124.nic	chr14	-	2135	3	ISM	ENSMUSG00000021848.17	ENSMUST00000119070.8	1708	5	4761	-494	120	0	3prime_fragment	FALSE	canonical	3	9	junction_2	17.5	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGGGTCTAGTTTAATTT	NA	False	NA	-1	True	ATTAAA	-16	NA	48900209	48895133	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_48896784_48898755_48898932_48899900
transcript_28128.known	chr14	-	381	1	FSM	ENSMUSG00000115194.2	ENSMUST00000226751.2	381	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCAACTTGATCCAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	48933438	48933057	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_48933100_48933400
transcript_28129.known	chr14	-	12699	18	FSM	ENSMUSG00000061244.15	ENSMUST00000162175.9	12699	18	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_14	16.0953043938104	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAATAAAAAAAAATCC	NA	False	NA	NA	False	NA	NA	NA	49304110	49241546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_49251807_49252873_49253090_49253654_49253764_49254930_49255018_49256858_49256980_49260655_49260765_49270727_49270876_49272264_49272475_49273455_49273539_49274215_49274357_49274460_49274506_49275129_49275240_49276811_49276841_49279941_49280007_49286160_49286356_49288776_49288925_49289754_49289850_49303582
transcript_2813.known	chr1	+	1855	10	FSM	ENSMUSG00000026203.17	ENSMUST00000188290.7	1855	10	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_9	6.24400947476761	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCGGTGGCCTGTGTTCC	2259	False	NA	4	True	AATAAA	-14	NA	75213130	75222334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_75213234_75213495_75213593_75214098_75214209_75215923_75215978_75216151_75216275_75217535_75217629_75217814_75217918_75218052_75218124_75220101_75220306_75221437
transcript_28134.known	chr14	+	2544	9	FSM	ENSMUSG00000036291.7	ENSMUST00000227410.2	2544	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	33.1200467994838	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTCTGTGGGTATCATT	NA	False	NA	NA	False	AATAAA	-42	NA	49303987	49324822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_49304322_49311005_49311200_49311426_49311652_49316151_49316380_49317692_49317833_49318292_49318379_49318467_49318587_49321315_49321413_49323701
transcript_28136.nic	chr14	+	2560	9	NIC	ENSMUSG00000036291.7	novel	6321	8	NA	NA	-79	0	intron_retention	TRUE	canonical	3	13	junction_8	38.1042976578758	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACATAAATTTGTGACATAA	NA	False	NA	NA	False	NA	NA	NA	49303872	49328336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_+_49304322_49311005_49311652_49316151_49316380_49317692_49317833_49318292_49318379_49318467_49318587_49321315_49321413_49323701_49323817_49327656
transcript_28139.known	chr14	+	6321	8	FSM	ENSMUSG00000036291.7	ENSMUST00000037473.6	6321	8	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_2	12.7487494384703	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACATAAATTTGTGACATAA	NA	False	NA	NA	False	NA	NA	NA	49303951	49328336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_49304322_49311005_49311652_49316151_49316380_49317692_49317833_49318292_49318379_49318467_49318587_49321315_49321413_49323701
transcript_28149.known	chr14	+	3514	2	FSM	ENSMUSG00000036291.7	ENSMUST00000228238.2	3514	2	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_1	0	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATAAGAAGTTAGAAA	NA	False	NA	NA	False	ATTAAA	-38	NA	49303952	49314150	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_49304322_49311005
transcript_28153.known	chr14	-	1758	3	FSM	ENSMUSG00000115737.2	ENSMUST00000226439.2	1758	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTATTGGGTCATTCTT	NA	False	NA	NA	False	AATAAA	-21	NA	49360169	49349577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_49351160_49359878_49360008_49360122
transcript_28154.known	chr14	+	4446	5	FSM	ENSMUSG00000036282.16	ENSMUST00000153488.9	4446	5	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_1	37.2458051329274	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATACAGCTGTGTGCATTCT	NA	False	NA	37	True	AATAAA	-34	NA	49409682	49428342	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_49409835_49410072_49410851_49415508_49415633_49418162_49418219_49425006
transcript_28155.known	chr14	-	8831	8	FSM	ENSMUSG00000036242.16	ENSMUST00000036972.14	8831	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	7.71693076346829	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTGTTTCTTCAATTTTA	NA	False	NA	NA	False	AATAAA	-19	NA	50020840	49913408	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_49919874_49920068_49920204_49926723_49926756_49988875_49989140_50005865_50006058_50007835_50008085_50010318_50011697_50020724
transcript_28157.known	chr14	-	3100	8	FSM	ENSMUSG00000036242.16	ENSMUST00000118129.2	3100	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	11.3730795642829	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATTTATGCTTGCTTTCT	NA	False	NA	NA	False	CATAAA	-10	NA	50020828	49919124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_49919871_49920068_49920204_49926723_49926756_49988875_49989140_50005865_50006058_50007835_50008085_50010318_50011697_50020724
transcript_28160.known	chr14	-	1842	10	FSM	ENSMUSG00000006288.9	ENSMUST00000006451.8	1842	10	0	0	0	0	multi-exon	FALSE	canonical	3	788	junction_6	38.5313724991294	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTATAGTTCTGTCTCTTT	NA	False	NA	-6	True	ATTAAA	-21	NA	51022976	51002871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_51003480_51004599_51004745_51009572_51009788_51009930_51010078_51010733_51010791_51012747_51012840_51014718_51014870_51015213_51015426_51018931_51019065_51022894
transcript_28161.known	chr14	-	2366	4	FSM	ENSMUSG00000006288.9	ENSMUST00000226768.2	2366	4	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_3	1.69967317119759	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGAGAGCTGCTGGTCG	NA	False	NA	-1	True	AATAAA	-18	NA	51022952	51012906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_51014870_51015213_51015426_51018931_51019065_51022894
transcript_28168.known	chr14	-	1509	4	FSM	ENSMUSG00000071470.5	ENSMUST00000095932.5	1509	4	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_1	17.4419672692682	438	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTCTTTTCTTTTTGGC	8876	False	NA	1	True	AATAAA	-20	NA	51033185	51026704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_51027470_51029429_51029764_51031014_51031332_51033092
transcript_2817.known	chr1	+	1823	10	FSM	ENSMUSG00000026203.17	ENSMUST00000188346.7	1823	10	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	13.4669233565562	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGGTGGCCTGTGTTCCTC	2241	False	NA	6	True	AATAAA	-16	NA	75213112	75222336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_75213182_75213495_75213593_75214098_75214209_75215923_75215978_75216151_75216275_75217535_75217629_75217814_75217918_75218052_75218124_75220101_75220306_75221437
transcript_28177.known	chr14	+	1894	16	FSM	ENSMUSG00000036023.7	ENSMUST00000036126.7	1894	16	0	0	0	0	multi-exon	FALSE	canonical	3	692	junction_5	52.2695577431708	1551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGCTTCTTTGGGTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	51045297	51058758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_51045445_51047530_51047672_51047956_51048028_51049232_51049284_51052326_51052424_51052808_51052885_51053653_51053757_51054429_51054581_51054788_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
transcript_28178.known	chr14	+	2173	15	FSM	ENSMUSG00000036023.7	ENSMUST00000228672.2	2173	15	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_7	45.539397610134	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGGCTTCTTTGGGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	51045402	51058757	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_51045445_51047530_51047672_51047956_51048028_51049232_51049284_51052326_51052885_51053653_51053757_51054429_51054581_51054788_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
transcript_28179.known	chr14	-	8171	55	FSM	ENSMUSG00000006281.9	ENSMUST00000006444.9	8171	55	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_54	10.7386492216491	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTATGCCCGATTGTGTTC	NA	False	NA	-4	True	TATAAA	-24	NA	51108017	51061515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_51061748_51061961_51062067_51062188_51062407_51062512_51062619_51064269_51064367_51064512_51064657_51066361_51066487_51066624_51066762_51067119_51067250_51067328_51067406_51067586_51067720_51069188_51069297_51070910_51071025_51071370_51071535_51073448_51073662_51073766_51073921_51074141_51074355_51074494_51074651_51074836_51074937_51075040_51075166_51075980_51076099_51076402_51076644_51078038_51078154_51078425_51078515_51078666_51078801_51079013_51079165_51079321_51079455_51080633_51080727_51081162_51081343_51081479_51081637_51081711_51081888_51081990_51082186_51082308_51082427_51082516_51082631_51082872_51082998_51083931_51084053_51084289_51084467_51085070_51085230_51087490_51087551_51088043_51088175_51089378_51089457_51090433_51090593_51091006_51091176_51091584_51091772_51091965_51092057_51093046_51093157_51098034_51098193_51098380_51098506_51099939_51100018_51100310_51100473_51100958_51101121_51103406_51103542_51104145_51104326_51105451_51106043_51107869
transcript_28180.nic	chr14	-	1554	10	ISM	ENSMUSG00000006281.9	ENSMUST00000006444.9	8171	55	40429	0	-60	0	intron_retention	FALSE	canonical	3	29	junction_7	7.57187779440036	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTATGCCCGATTGTGTTC	NA	False	NA	-4	True	TATAAA	-24	NA	51067588	51061515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_51061748_51061961_51062067_51062188_51062407_51062512_51062619_51064269_51064367_51064512_51064657_51066361_51066487_51066624_51066762_51067119_51067250_51067328
transcript_28183.known	chr14	+	2513	2	FSM	ENSMUSG00000097431.3	ENSMUST00000181482.2	2513	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	2384	False	NA	NA	False	AATAAA	-33	NA	51107832	51116460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_51108014_51114128
transcript_28185.known	chr14	-	1308	11	FSM	ENSMUSG00000006289.15	ENSMUST00000006452.13	1308	11	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_6	238.07706735425	179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGTTGTGTTTTTCAGTT	NA	False	NA	-1	True	AATAAA	-24	NA	51162287	51153138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_51153356_51153608_51153708_51153798_51153875_51154070_51154162_51154256_51154323_51154688_51154768_51154839_51154961_51155292_51155389_51157072_51157249_51157386_51157507_51162120
transcript_28188.known	chr14	-	2755	7	FSM	ENSMUSG00000035953.15	ENSMUST00000160835.9	2755	7	0	0	0	0	multi-exon	FALSE	canonical	3	698	junction_6	55.5447767321305	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGAGTGTCCGTTAGTCAC	NA	False	NA	NA	False	TATAAA	-16	NA	51168306	51163524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_51165495_51166277_51166369_51166462_51166516_51166658_51166765_51167040_51167148_51167590_51167782_51168069
transcript_28189.known	chr14	-	1594	7	FSM	ENSMUSG00000035953.15	ENSMUST00000049312.14	1594	7	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_6	212.437441772082	1140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTCCCACTTAACAACTT	NA	False	NA	-9	True	AATAAA	-18	NA	51168313	51164671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_51165495_51166277_51166369_51166462_51166516_51166658_51166765_51167040_51167148_51167590_51167782_51168090
transcript_2819.known	chr1	+	3066	9	FSM	ENSMUSG00000026203.17	ENSMUST00000188931.7	3066	9	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	4.89738450603993	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTCGGTGGCCTGTGTT	2178	False	NA	2	True	AATAAA	-12	NA	75213049	75222332	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_75213234_75213495_75213593_75214098_75214209_75215923_75215978_75216151_75216275_75217535_75217629_75217814_75217918_75218052_75218124_75220101
transcript_28190.known	chr14	-	1465	6	FSM	ENSMUSG00000035953.15	ENSMUST00000162957.8	1465	6	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	295.870647412007	1126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTCCCACTTAACAACTT	NA	False	NA	-9	True	AATAAA	-18	NA	51168269	51164671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_51165495_51166277_51166369_51166462_51166516_51167040_51167148_51167590_51167782_51168069
transcript_28196.known	chr14	+	655	5	FSM	ENSMUSG00000035960.15	ENSMUST00000136753.8	655	5	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_1	445.940298694792	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGTAAGACTGGAATACCGA	180	False	NA	NA	False	NA	NA	NA	51162425	51164008	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_51162492_51162669_51162782_51162973_51163162_51163617_51163811_51163912
transcript_28199.known	chr14	+	1372	6	FSM	ENSMUSG00000068417.9	ENSMUST00000095925.5	1372	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	36.6911433454996	167	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGACTTGCTTGTCTTGGTT	NA	False	NA	NA	False	NA	NA	NA	51193448	51202206	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_51193686_51196971_51197142_51200561_51200666_51200846_51201023_51201135_51201327_51201712
transcript_282.known	SIRV4	+	1567	3	FSM	SIRV4C	SIRV409	1567	3	0	0	0	0	multi-exon	FALSE	canonical	3	1019	junction_2	11.5	6305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATATTGTAACCTGTCAAG	NA	False	NA	NA	False	NA	NA	NA	1000	3403	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV4_+_1347_1678_1886_2389
transcript_2820.known	chr1	+	1732	9	FSM	ENSMUSG00000026203.17	ENSMUST00000187058.7	1732	9	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_3	13.076696830622	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCGGTGGCCTGTGTTCC	2328	False	NA	4	True	AATAAA	-14	NA	75213199	75222334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_75213234_75213495_75213593_75214098_75214209_75216151_75216275_75217535_75217629_75217814_75217918_75218052_75218124_75220101_75220306_75221437
transcript_28201.known	chr14	+	1518	2	FSM	ENSMUSG00000021876.16	ENSMUST00000022428.13	1518	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTCGGGATTTGTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	51328533	51343604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_51328711_51342263
transcript_28202.known	chr14	+	728	2	FSM	ENSMUSG00000072115.12	ENSMUST00000171688.9	728	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTCAGTCTGGAAGATCAC	NA	False	NA	NA	False	AATAAA	-21	NA	51328606	51339466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_51328711_51338842
transcript_28203.known	chr14	-	992	2	FSM	ENSMUSG00000035896.6	ENSMUST00000080126.4	992	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGTAGCCATAGCTCCCA	NA	False	NA	NA	False	AATAAA	-21	NA	51384242	51382454	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_51383377_51384172
transcript_28204.known	chr14	-	896	2	FSM	ENSMUSG00000047894.3	ENSMUST00000228835.2	896	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGAGTCAGTCTGGAAGA	NA	False	NA	NA	False	AATAAA	-17	NA	51436605	51432780	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_51433399_51436327
transcript_28207.known	chr14	+	2334	4	FSM	ENSMUSG00000072572.10	ENSMUST00000047726.12	2334	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	1.24721912892465	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACAGACTGCCTCACTGGC	NA	False	NA	NA	False	NA	NA	NA	52131066	52134202	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_52131372_52131545_52131677_52131912_52131964_52132355
transcript_28208.known	chr14	+	2508	3	FSM	ENSMUSG00000072572.10	ENSMUST00000160668.2	2508	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTCATTGCAATTCTGCC	NA	False	NA	14	True	AATAAA	-25	NA	52130345	52133263	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_52131372_52131545_52131677_52131912
transcript_28211.known	chr14	+	1623	14	FSM	ENSMUSG00000004561.15	ENSMUST00000047899.13	1623	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	48.1261901412816	777	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGGATGTTCTGATTGC	NA	False	NA	NA	False	AATAAA	-16	NA	52122298	52129325	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_52122481_52122607_52122762_52122844_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126603_52126675_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
transcript_28212.known	chr14	+	1844	13	FSM	ENSMUSG00000004561.15	ENSMUST00000168413.8	1844	13	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_7	44.5586380202787	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAATAGAGGTGGATGTT	NA	False	NA	NA	False	AATAAA	-8	NA	52122332	52129317	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_52122481_52122607_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126603_52126855_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
transcript_28213.known	chr14	+	582	2	FSM	ENSMUSG00000004561.15	ENSMUST00000168409.2	582	2	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGAAGGTAGGTTGGGCCA	NA	False	NA	NA	False	NA	NA	NA	52122410	52123119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_52122481_52122607
transcript_28214.known	chr14	-	2099	16	FSM	ENSMUSG00000004558.16	ENSMUST00000004673.15	2099	16	0	0	0	0	multi-exon	TRUE	canonical	3	23	junction_14	42.8779145429854	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCGGGTCTGAATGCGCC	NA	False	NA	1	True	AATAAA	-28	NA	52150887	52142727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_52143764_52143969_52144022_52144146_52144183_52144405_52144454_52144702_52144755_52145041_52145087_52145524_52145629_52145786_52145844_52146024_52146112_52146330_52146392_52147514_52147578_52147771_52147893_52148136_52148243_52148542_52148585_52148922_52149004_52150779
transcript_28216.known	chr14	-	2103	15	FSM	ENSMUSG00000004558.16	ENSMUST00000111632.5	2103	15	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_6	11.1385064766607	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGCATTGTTAATCCGGG	9982	False	NA	-11	True	AATAAA	-16	NA	52150945	52142739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_52143764_52143969_52144022_52144146_52144183_52144405_52144454_52144702_52144755_52145041_52145087_52145524_52145629_52145786_52145844_52146024_52146112_52146330_52146392_52147514_52147578_52147771_52147893_52148136_52148243_52148922_52149004_52150779
transcript_28221.known	chr14	+	742	4	FSM	ENSMUSG00000008813.14	ENSMUST00000008957.13	742	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.816496580927726	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGAGCGAGTTCCATCTCAT	NA	False	NA	NA	False	AATAAA	-17	NA	52155881	52158157	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_52155950_52156171_52156418_52156797_52156952_52157883
transcript_28226.nic	chr14	-	2838	5	NIC	ENSMUSG00000049295.18	novel	2933	5	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_4	155.633182515812	775	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCTGTGTGTGTCTGCCT	9450	False	NA	-7	True	AATAAA	-20	NA	52248354	52243538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_-_52244605_52244820_52244953_52245684_52247120_52247426_52247516_52248238
transcript_28229.known	chr14	-	2933	5	FSM	ENSMUSG00000049295.18	ENSMUST00000067549.15	2933	5	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_4	128.195895020082	790	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCTGTGTGTGTCTGCCT	4694	False	NA	-7	True	AATAAA	-20	NA	52258190	52243538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52247426_52247516_52257979
transcript_28232.known	chr14	-	2812	4	FSM	ENSMUSG00000049295.18	ENSMUST00000228580.2	2812	4	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_3	140.753527684231	806	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCTGTGTGTGTCTGCCT	4726	False	NA	-7	True	AATAAA	-20	NA	52258158	52243538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52257979
transcript_28234.nic	chr14	+	1090	3	ISM	ENSMUSG00000072571.4	ENSMUST00000100638.4	1234	7	1434	0	1380	0	3prime_fragment	FALSE	canonical	3	19	junction_2	0.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTGACGCCAGGCGCTG	NA	False	NA	23	True	AATAAA	-37	NA	52255755	52257251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_+_52256110_52256188_52256336_52256662
transcript_28236.known	chr14	-	3017	6	FSM	ENSMUSG00000049295.18	ENSMUST00000166169.4	3017	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	162.277540035582	732	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGGCCCTGTGTGTGTCT	5739	False	NA	-11	True	AATAAA	-16	NA	52257145	52243542	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52247426_52247516_52252404_52252510_52256951
transcript_28237.known	chr14	+	1234	7	FSM	ENSMUSG00000072571.4	ENSMUST00000100638.4	1234	7	0	0	0	0	multi-exon	TRUE	canonical	3	12	junction_4	6.83130051063973	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTGACGCCAGGCGCTG	NA	False	NA	23	True	AATAAA	-37	NA	52254321	52257251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_52254399_52254512_52254655_52255207_52255319_52255410_52255468_52255998_52256110_52256188_52256336_52256662
transcript_28238.known	chr14	+	415	2	FSM	ENSMUSG00000072571.4	ENSMUST00000228408.2	415	2	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAAAGGGGCATCTCATT	NA	False	NA	NA	False	NA	NA	NA	52254350	52254879	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_52254399_52254512
transcript_28239.known	chr14	+	825	1	FSM	ENSMUSG00000115141.2	ENSMUST00000227187.2	825	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTATAGGTGATATTTT	NA	False	NA	NA	False	AATACA	-19	NA	52260740	52261565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_52260700_52261600
transcript_2824.known	chr1	-	3554	23	FSM	ENSMUSG00000026204.16	ENSMUST00000027404.12	3554	23	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_15	2.05553073719909	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCGCTGTCTGTCATGCTT	NA	False	NA	9	True	AATAAA	-42	NA	75240857	75223670	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_75224265_75224480_75224555_75224745_75224811_75225369_75225424_75228394_75228562_75228899_75229020_75229111_75229190_75229414_75229489_75229655_75229804_75229903_75230105_75230566_75230786_75231228_75231294_75231422_75231503_75231768_75231856_75232270_75232546_75233486_75233525_75233936_75234069_75234588_75234941_75235022_75235282_75237214_75237312_75238670_75238785_75238966_75239018_75240647
transcript_28240.known	chr14	+	549	1	FSM	ENSMUSG00000115736.2	ENSMUST00000228203.2	549	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATTCAGCATAAATAAAT	2023	False	NA	NA	False	AATAAA	-17	NA	52306927	52307476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_52306900_52307500
transcript_28260.known	chr14	-	2535	9	FSM	ENSMUSG00000060373.16	ENSMUST00000228232.2	2535	9	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_8	1522.21910380865	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCAACTGTCTCCAAAAT	8749	False	NA	39	True	AATAAA	-15	NA	52341461	52312258	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52334778_52336002_52341345
transcript_28282.known	chr14	-	2847	9	FSM	ENSMUSG00000060373.16	ENSMUST00000111610.12	2847	9	0	0	0	0	multi-exon	FALSE	canonical	3	714	junction_5	1135.23408929612	1169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTTGGTATATACATCA	8725	False	NA	-31	True	AATAAA	-22	NA	52341485	52310833	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52335471_52335498_52341345
transcript_28283.known	chr14	-	1301	8	FSM	ENSMUSG00000060373.16	ENSMUST00000227536.2	1301	8	0	0	0	0	multi-exon	FALSE	canonical	3	1725	junction_7	903.44372897739	4293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACTGTCTCCAAAATAAT	8784	False	NA	42	True	AATAAA	-18	NA	52341426	52312255	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341345
transcript_28284.known	chr14	-	1691	9	FSM	ENSMUSG00000060373.16	ENSMUST00000228748.2	1691	9	0	0	0	0	multi-exon	FALSE	canonical	3	1620	junction_2	876.028386740407	4180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTGAAGGAAAGACAATT	8746	False	NA	-17	True	AATAAA	-21	NA	52341464	52311908	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
transcript_28285.known	chr14	-	2617	9	FSM	ENSMUSG00000060373.16	ENSMUST00000227242.2	2617	9	0	0	0	0	multi-exon	FALSE	canonical	3	1744	junction_2	852.637149891441	3329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTAGAAGCTGGTGTGT	8748	False	NA	-38	True	AATAAA	-19	NA	52341462	52311001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
transcript_28286.known	chr14	-	1683	9	FSM	ENSMUSG00000060373.16	ENSMUST00000227458.2	1683	9	0	0	0	0	multi-exon	FALSE	canonical	3	633	junction_2	1099.6436638748	3124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATTTGAAGGAAAGACAAT	8750	False	NA	-18	True	AATAAA	-20	NA	52341460	52311909	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_52312618_52312711_52312870_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
transcript_28288.known	chr14	-	4673	26	FSM	ENSMUSG00000035726.9	ENSMUST00000046709.9	4673	26	0	0	0	0	multi-exon	FALSE	canonical	3	979	junction_21	82.6076606617086	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTCTTATGACCATTT	NA	False	NA	-1	True	AATAAA	-40	NA	52434873	52397870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_52399280_52400143_52400222_52400640_52400771_52401878_52402009_52408283_52408454_52408882_52408959_52409494_52409608_52409904_52410031_52410927_52411047_52411233_52411361_52411452_52411589_52412698_52412827_52413816_52413971_52414066_52414183_52414405_52414502_52414611_52414678_52415500_52415614_52415740_52415815_52416930_52417022_52417557_52417731_52418473_52418626_52418993_52419141_52419613_52419767_52420468_52420640_52421384_52421478_52434541
transcript_28291.nic	chr14	-	1497	10	ISM	ENSMUSG00000035726.9	ENSMUST00000046709.9	4673	26	-64	17696	-64	-16391	5prime_fragment	FALSE	canonical	3	979	junction_5	79.8449114004343	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGGGAAAAAGCCAGAAGA	NA	False	NA	NA	False	NA	NA	NA	52434937	52415566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_52415614_52415740_52415815_52416930_52417022_52417557_52417731_52418473_52418626_52418993_52419141_52419613_52419767_52420468_52420640_52421384_52421478_52434541
transcript_28295.nic	chr14	-	1017	6	ISM	ENSMUSG00000035726.9	ENSMUST00000046709.9	4673	26	-64	20698	-64	-19393	5prime_fragment	FALSE	canonical	3	979	junction_1	84.3644474882637	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTAGCTGGGGCAGATCC	NA	False	NA	NA	False	AAGAAA	-6	NA	52434937	52418568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_52418626_52418993_52419141_52419613_52419767_52420468_52420640_52421384_52421478_52434541
transcript_28301.nic	chr14	-	336	3	ISM	ENSMUSG00000053754.15	ENSMUST00000089752.11	8190	37	4928	29409	4928	-3171	internal_fragment	FALSE	canonical	3	49	junction_1	4	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTCCCAGAACCAGTGCAA	NA	False	NA	NA	False	AATAAA	-12	NA	52470101	52465016	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_52465138_52468894_52469010_52470001
transcript_28302.known	chr14	-	3329	1	FSM	ENSMUSG00000053754.15	ENSMUST00000199135.2	3329	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	488	False	NA	NA	False	NA	NA	NA	52495180	52491851	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_52491900_52495200
transcript_28305.known	chr14	-	2025	11	FSM	ENSMUSG00000022160.19	ENSMUST00000022767.16	2025	11	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_7	19.5910693939866	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGGCTTTCCACTTAGTG	NA	False	NA	-16	True	AATAAA	-39	NA	52542585	52532297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_52532551_52533530_52533644_52533972_52534039_52534120_52534230_52534375_52534415_52534927_52535116_52535325_52535543_52536096_52536273_52537157_52537563_52537640_52537859_52542344
transcript_28315.known	chr14	-	2906	8	FSM	ENSMUSG00000022159.17	ENSMUST00000022765.14	2906	8	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_5	9.75202752335772	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATGTGTCATTTCTGAC	NA	False	NA	1	True	ATTAAA	-27	NA	52517002	52499215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_52501275_52502155_52502225_52503646_52503759_52506098_52506192_52506374_52506458_52512899_52512968_52516370_52516443_52516652
transcript_28317.known	chr14	-	607	8	FSM	ENSMUSG00000022159.17	ENSMUST00000174020.8	607	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_5	49.8475226084916	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCGGGCCTGAGTGAGCG	NA	False	NA	NA	False	NA	NA	NA	52516698	52501166	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_52501275_52502155_52502225_52503646_52503759_52506098_52506192_52506374_52506414_52512899_52512968_52516370_52516443_52516652
transcript_28324.nic	chr14	-	724	3	ISM	ENSMUSG00000022159.17	ENSMUST00000172488.8	475	6	-272	11467	32	-10427	5prime_fragment	FALSE	canonical	3	155	junction_1	2.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAACTGTAGGATGAGGC	NA	False	NA	NA	False	AAGAAA	-5	NA	52516970	52512633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_52512968_52516370_52516443_52516652
transcript_28325.known	chr14	-	1504	1	FSM	ENSMUSG00000022160.19	ENSMUST00000197394.2	1504	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	52542581	52541077	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_52541100_52542600
transcript_28326.known	chr14	+	5350	10	FSM	ENSMUSG00000016831.13	ENSMUST00000022766.8	5350	10	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	167.945390889383	247	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTCTAGTCTGGTCTGTG	NA	False	NA	21	True	AAAAAG	-14	NA	52516602	52533858	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_52516690_52516844_52517114_52517277_52517347_52523116_52523360_52524185_52524447_52524757_52524989_52528217_52528299_52528931_52529676_52529976_52530141_52530657
transcript_28327.known	chr14	-	504	3	FSM	ENSMUSG00000022160.19	ENSMUST00000173546.2	504	3	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_1	7	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTCTGAAGTGAAATTAT	NA	False	NA	-32	True	AATAAA	-23	NA	52534126	52532313	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_52532551_52533530_52533644_52533972
transcript_28328.known	chr14	-	2159	9	FSM	ENSMUSG00000022160.19	ENSMUST00000147768.8	2159	9	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	54.0854358861977	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACTGCCATATTATTTGC	NA	False	NA	NA	False	ATTAAA	-21	NA	52542581	52532963	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_52533644_52533972_52534039_52534120_52534230_52534375_52534415_52534927_52535116_52535325_52535543_52537157_52537563_52537640_52537859_52542344
transcript_28329.known	chr14	-	392	3	FSM	ENSMUSG00000022160.19	ENSMUST00000173656.2	392	3	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_1	66	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTCTGAAGTGAAATTAT	NA	False	NA	-32	True	AATAAA	-23	NA	52534209	52532313	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_52532551_52533972_52534039_52534120
transcript_28330.known	chr14	+	451	2	FSM	ENSMUSG00000094023.4	ENSMUST00000178768.4	451	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTGCTCTCCAGGCACC	NA	False	NA	NA	False	NA	NA	NA	53007209	53007849	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_53007369_53007557
transcript_28331.known	chr14	+	415	2	FSM	ENSMUSG00000095854.5	ENSMUST00000181038.3	415	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTGCTCTCCAGGCACC	1860	False	NA	NA	False	NA	NA	NA	53093070	53093623	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_53093174_53093311
transcript_28333.known	chr14	-	1768	1	FSM	ENSMUSG00000115785.2	ENSMUST00000228343.2	1768	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTCTTTGGAGGTCTAGGA	NA	False	NA	NA	False	AATAAA	-34	NA	53100209	53098441	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_53098400_53100200
transcript_28334.known	chr14	+	438	1	FSM	ENSMUSG00000094974.2	ENSMUST00000100614.6	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3052	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGGATGCTGGGTTAA	NA	False	NA	NA	False	NA	NA	NA	53140249	53140687	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_53140200_53140700
transcript_28336.known	chr14	+	415	2	FSM	ENSMUSG00000096827.3	ENSMUST00000196639.2	415	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTGCTCTCCAGGCACC	NA	False	NA	NA	False	NA	NA	NA	53404082	53404635	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_53404186_53404323
transcript_28338.known	chr14	+	438	1	FSM	ENSMUSG00000096681.2	ENSMUST00000168472.3	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3025	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGGATGCTGGGTTAA	7934	False	NA	NA	False	NA	NA	NA	53451186	53451624	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_53451200_53451600
transcript_28339.known	chr14	+	411	2	FSM	ENSMUSG00000093966.3	ENSMUST00000103655.3	411	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTGCTCCCAGCAAGGC	NA	False	NA	NA	False	NA	NA	NA	53836284	53836867	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_53836417_53836588
transcript_2834.known	chr1	-	2510	15	FSM	ENSMUSG00000026209.16	ENSMUST00000185797.7	2510	15	0	0	0	0	multi-exon	FALSE	canonical	3	522	junction_14	119.683362013511	849	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGGTTTGAAATGGATTG	NA	False	NA	NA	False	TATAAA	-15	NA	75294303	75284539	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353_75293448_75293978
transcript_28343.nnic	chr14	+	627	4	NNC	ENSMUSG00000087666.4	novel	426	2	NA	NA	0	2094	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4.24264068711928	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCCTTAGTCTTTCACC	NA	False	NA	NA	False	NA	NA	NA	54032813	54035514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_54032964_54033144_54033246_54034811_54034934_54035260
transcript_28344.nnic	chr14	+	561	3	NNC	ENSMUSG00000087666.4	novel	426	2	NA	NA	-56	2094	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	4	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCCTTAGTCTTTCACC	NA	False	NA	NA	False	NA	NA	NA	54032757	54035514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_54032964_54033144_54033246_54035260
transcript_28345.known	chr14	+	426	2	FSM	ENSMUSG00000087666.4	ENSMUST00000103671.4	426	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTGCTCCCCAGGCACC	NA	False	NA	NA	False	NA	NA	NA	54032813	54033420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_54032964_54033144
transcript_28351.known	chr14	-	878	3	FSM	ENSMUSG00000022174.9	ENSMUST00000022781.8	878	3	0	0	0	0	multi-exon	FALSE	canonical	3	1530	junction_1	8	15992	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGTTCCTTCATGTTTGTG	NA	False	NA	-11	True	ATTAAA	-24	NA	54491561	54472935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_54473171_54480155_54480326_54491088
transcript_28354.known	chr14	+	2508	7	FSM	ENSMUSG00000040997.15	ENSMUST00000180359.8	2508	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	134.648616777151	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATAGTATTAACTCCTGG	NA	False	NA	-78	True	TATAAA	-16	NA	54491644	54506532	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_54491929_54499082_54499172_54500107_54500481_54500625_54500781_54502737_54502850_54504451_54504639_54505224
transcript_28357.known	chr14	+	2406	7	FSM	ENSMUSG00000040997.15	ENSMUST00000239403.2	2406	7	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_1	38.1200588783502	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACACTGTTTAATATTGAT	NA	False	NA	16	True	AATAAA	-23	NA	54496688	54506626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_54496777_54499082_54499172_54500107_54500481_54500625_54500781_54502737_54502850_54504451_54504639_54505224
transcript_28359.known	chr14	+	647	3	FSM	ENSMUSG00000040997.15	ENSMUST00000197802.2	647	3	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_1	51.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTAGAGTTAAACATCTT	NA	False	NA	NA	False	AATACA	-16	NA	54496729	54500618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_54496777_54499082_54499172_54500107
transcript_28386.known	chr14	-	2278	12	FSM	ENSMUSG00000000958.11	ENSMUST00000197440.5	2278	12	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_11	56.5898685556036	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTCTGAGTGGCTTTATT	NA	False	NA	-6	True	AATAAA	-15	NA	54655156	54606900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54651336_54651471_54654045_54654228_54655113
transcript_28393.known	chr14	-	2126	11	FSM	ENSMUSG00000000958.11	ENSMUST00000226753.2	2126	11	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_10	53.6977653166312	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGAGTGGCTTTATTCT	NA	False	NA	-4	True	AATAAA	-17	NA	54655136	54606898	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54654045_54654228_54655113
transcript_28401.known	chr14	-	2132	10	FSM	ENSMUSG00000000958.11	ENSMUST00000000984.9	2132	10	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_9	47.5249122455857	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGAGTGGCTTTATTCT	7303	False	NA	-4	True	AATAAA	-17	NA	54646917	54606898	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54646706
transcript_28415.known	chr14	+	1059	1	FSM	ENSMUSG00000000959.8	ENSMUST00000228567.2	1059	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATGAAAAAAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	54598290	54599349	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_54598300_54599300
transcript_28416.known	chr14	+	2538	10	FSM	ENSMUSG00000000959.8	ENSMUST00000000985.7	2538	10	0	0	0	0	multi-exon	TRUE	canonical	3	499	junction_4	29.1475598792348	1675	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGTTCAGAGTTGAAGCT	NA	False	NA	NA	False	AATAAA	-21	NA	54598297	54607130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_54598375_54598778_54598926_54600738_54600953_54604165_54604310_54604481_54604568_54604722_54604888_54605044_54605150_54605249_54605413_54605609_54605691_54605774
transcript_28417.known	chr14	+	1438	3	FSM	ENSMUSG00000000959.8	ENSMUST00000198107.2	1438	3	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_1	34.5	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAAAAATGTTCCTTT	NA	False	NA	NA	False	NA	NA	NA	54598297	54601952	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_54598375_54598778_54598926_54600738
transcript_28418.known	chr14	-	622	4	FSM	ENSMUSG00000000958.11	ENSMUST00000195999.2	622	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	13.0213499897497	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCGACGATGGCTCTGCTC	NA	False	NA	NA	False	NA	NA	NA	54655237	54646420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_54646506_54649041_54649104_54654045_54654228_54654944
transcript_28421.known	chr14	+	856	1	FSM	ENSMUSG00000010406.13	ENSMUST00000199153.2	856	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	54664378	54665234	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_54664400_54665200
transcript_28422.known	chr14	+	463	4	FSM	ENSMUSG00000010406.13	ENSMUST00000199195.3	463	4	0	0	0	0	multi-exon	FALSE	canonical	3	1331	junction_1	96.858430482615	1058	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGACTCTCTCTGGCTT	NA	False	NA	20	True	AATAAA	-21	NA	54664386	54667206	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_54664549_54664627_54664696_54666040_54666106_54667038
transcript_28423.known	chr14	+	418	5	FSM	ENSMUSG00000010406.13	ENSMUST00000010550.12	418	5	0	0	0	0	multi-exon	FALSE	canonical	3	1056	junction_1	196.876230154887	14897	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCTCTGGCTTTCTTTTC	NA	False	NA	27	True	AATAAA	-28	NA	54664365	54667213	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_54664418_54664490_54664549_54664627_54664696_54666040_54666106_54667038
transcript_28424.known	chr14	+	134	2	FSM	ENSMUSG00000010406.13	ENSMUST00000228871.2	134	2	0	0	0	0	multi-exon	FALSE	canonical	3	1056	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGGACCTAGTATCCCGCC	NA	False	NA	NA	False	NA	NA	NA	54664368	54664575	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_54664418_54664490
transcript_28425.known	chr14	+	429	3	FSM	ENSMUSG00000010406.13	ENSMUST00000199689.2	429	3	0	0	0	0	multi-exon	FALSE	canonical	3	1524	junction_2	11.5	861	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCCCAGACTCTCTCTGG	NA	False	NA	17	True	AATAAA	-18	NA	54664496	54667203	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_54664696_54666040_54666106_54667038
transcript_28426.known	chr14	+	277	3	FSM	ENSMUSG00000010406.13	ENSMUST00000196273.2	277	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	660.5	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGACTCTCTCTGGCTT	NA	False	NA	20	True	AATAAA	-21	NA	54664507	54667206	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_54664549_54664627_54664696_54667038
transcript_28427.known	chr14	+	4228	7	FSM	ENSMUSG00000022175.10	ENSMUST00000022782.10	4228	7	0	0	0	0	multi-exon	TRUE	canonical	3	169	junction_1	20.8306664959782	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAAGGTTTCCTTTGTTGT	NA	False	NA	NA	False	AATATA	-18	NA	54701593	54708954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_54702069_54702360_54702406_54703030_54703167_54704916_54705108_54705220_54706239_54706492_54706623_54706721
transcript_28428.known	chr14	+	1884	5	FSM	ENSMUSG00000022176.12	ENSMUST00000164766.8	1884	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	2.29128784747792	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAAGTTTATCTTGGCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	54713556	54717888	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_54713832_54714927_54715273_54715484_54715559_54716410_54716619_54716906
transcript_28438.known	chr14	-	1587	10	FSM	ENSMUSG00000022177.10	ENSMUST00000022784.9	1587	10	0	0	0	0	multi-exon	FALSE	canonical	3	401	junction_5	37.1423687391577	720	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTAGTCATTTTTCCT	NA	False	NA	-1	True	AATAAA	-20	NA	54791818	54779241	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_54779715_54779839_54779909_54781235_54781367_54781661_54781808_54783182_54783280_54786322_54786458_54787125_54787258_54787350_54787494_54789593_54789668_54791631
transcript_28450.known	chr14	-	3397	8	FSM	ENSMUSG00000022178.12	ENSMUST00000054487.10	3397	8	0	0	0	0	multi-exon	TRUE	canonical	3	297	junction_5	54.835933399886	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGAGTGTATTGTGGT	NA	False	NA	-6	True	AGTAAA	-18	NA	54815015	54804928	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_54806514_54806932_54807002_54807701_54807754_54807833_54807965_54809057_54809121_54809222_54809291_54810848_54810951_54813688
transcript_28479.known	chr14	-	899	3	FSM	ENSMUSG00000022193.8	ENSMUST00000022803.6	899	3	0	0	0	0	multi-exon	FALSE	canonical	3	1854	junction_2	4.5	48103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGGAGTCCACAGTTATT	8624	False	NA	-17	True	AATAAA	-18	NA	54855479	54851575	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_54851939_54853971_54854279_54855250
transcript_2848.known	chr1	-	1571	15	FSM	ENSMUSG00000026209.16	ENSMUST00000113605.10	1571	15	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_14	185.094639334056	720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTCTGTGCTTTTTCTGA	NA	False	NA	-1	True	ATTAAA	-17	NA	75293589	75285208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353_75293448_75293534
transcript_28480.known	chr14	-	622	3	FSM	ENSMUSG00000022193.8	ENSMUST00000227257.2	622	3	0	0	0	0	multi-exon	FALSE	canonical	2	118	junction_1	868	1965	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGTGGAGTCCACAGTTA	8638	False	NA	-19	True	AATAAA	-16	NA	54855465	54851577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_54851939_54854232_54854279_54855250
transcript_28481.known	chr14	-	4383	19	FSM	ENSMUSG00000022185.20	ENSMUST00000147714.8	4383	19	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_16	159.32330861072	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGAGTGCCTTTCCTTGG	2945	False	NA	-1	True	AATAAA	-24	NA	54924073	54879618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884025_54884159_54884294_54885544_54885588_54889173_54889316_54899624_54899741_54901043_54901263_54901828_54903092_54904529_54904619_54916199_54916320_54916697_54916810_54922467_54922534_54923925
transcript_28484.known	chr14	-	2494	13	FSM	ENSMUSG00000022185.20	ENSMUST00000150371.8	2494	13	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_12	131.761437412047	705	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCATTTGAGTGCCTTTC	3757	False	NA	-6	True	AATAAA	-19	NA	54891139	54879623	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54890670_54890736_54890991
transcript_28485.known	chr14	-	2373	13	FSM	ENSMUSG00000022185.20	ENSMUST00000148754.10	2373	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_12	140.751628172939	694	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGAGTGCCTTTCCTTGG	3738	False	NA	-1	True	AATAAA	-24	NA	54891158	54879618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54890670_54890736_54891136
transcript_28487.known	chr14	-	2381	12	FSM	ENSMUSG00000022185.20	ENSMUST00000141453.8	2381	12	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_11	154.04743285835	726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTGCCTTTCCTTGGG	3772	False	NA	0	True	AATAAA	-25	NA	54891124	54879617	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884025_54884159_54884291_54885544_54885588_54889173_54889316_54890991
transcript_28489.known	chr14	-	2369	12	FSM	ENSMUSG00000022185.20	ENSMUST00000126166.8	2369	12	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_11	105.5899600787	754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTGCCTTTCCTTGGG	3823	False	NA	0	True	AATAAA	-25	NA	54891073	54879617	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54890991
transcript_2849.known	chr1	+	3028	9	FSM	ENSMUSG00000026208.10	ENSMUST00000027409.10	3028	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	8.9154010005159	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTATGAGGCCATGATAACA	NA	False	NA	NA	False	AATAAA	-13	NA	75336972	75345223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_75337637_75338801_75338863_75338956_75339053_75339208_75339371_75339537_75339664_75340114_75340336_75341971_75342016_75343403_75343487_75343652
transcript_2850.nic	chr1	+	1677	8	ISM	ENSMUSG00000026208.10	ENSMUST00000027409.10	3028	9	1653	863	-48	-863	3prime_fragment	FALSE	canonical	3	24	junction_7	3.01695886884898	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCATGGCCCTGTCATCT	NA	False	NA	4	True	AATAAA	-15	NA	75338625	75344360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_75338863_75338956_75339053_75339208_75339371_75339537_75339664_75340114_75340336_75341971_75342016_75343403_75343487_75343652
transcript_28506.known	chr14	+	811	3	FSM	ENSMUSG00000040822.8	ENSMUST00000228027.2	811	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	179.5	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTCGAGGTTGGGCTGA	NA	False	NA	NA	False	NA	NA	NA	54923693	54927570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_54924111_54924493_54924578_54927260
transcript_28509.known	chr14	+	893	3	FSM	ENSMUSG00000040822.8	ENSMUST00000227269.2	893	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATTTACAGGAGATGTCT	NA	False	NA	NA	False	NA	NA	NA	54924500	54927984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_54924578_54926642_54926735_54927260
transcript_28512.known	chr14	+	1843	2	FSM	ENSMUSG00000040822.8	ENSMUST00000038539.8	1843	2	0	0	0	0	multi-exon	FALSE	canonical	3	385	junction_1	0	2172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTACTGGTGATTCACAT	NA	False	NA	NA	False	AATAAA	-26	NA	54923672	54928198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_54924578_54927260
transcript_28514.known	chr14	-	1241	2	FSM	ENSMUSG00000052435.8	ENSMUST00000064290.8	1241	2	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTTCACTGGGTCTTGG	9086	False	NA	NA	False	AATAAA	-23	NA	54949631	54947816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_54948332_54948905
transcript_28518.known	chr14	-	4713	2	FSM	ENSMUSG00000057156.11	ENSMUST00000142283.4	4713	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTACTGCTTCTCCATGG	5528	False	NA	NA	False	AATAAA	-21	NA	55101615	55091243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55095739_55101397
transcript_28521.known	chr14	+	1201	15	FSM	ENSMUSG00000112858.3	ENSMUST00000218311.2	1201	15	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_1	4.37525509460387	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAAAACTGTGTGTGT	NA	False	NA	1	True	ATTAAA	-5	NA	55051597	55091552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55051743_55053942_55054044_55056993_55057047_55057594_55057670_55075569_55075686_55076681_55076743_55077723_55077753_55079339_55079387_55079595_55079639_55079805_55079867_55080243_55080293_55086123_55086164_55086751_55086847_55087992_55088055_55091328
transcript_28522.known	chr14	+	1095	14	FSM	ENSMUSG00000112858.3	ENSMUST00000220122.2	1095	14	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	6.68478799458475	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAAAACTGTGTGTGT	NA	False	NA	1	True	ATTAAA	-5	NA	55051650	55091552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55051743_55053942_55054044_55057594_55057670_55075569_55075686_55076681_55076743_55077723_55077753_55079339_55079387_55079595_55079639_55079805_55079867_55080243_55080293_55086123_55086164_55086751_55086847_55087992_55088055_55091328
transcript_28527.nnic	chr14	+	944	8	NIC	ENSMUSG00000092232.2	novel	1245	9	NA	NA	56	-3	combination_of_known_splicesites	FALSE	canonical	3	17	junction_2	1110.05826285775	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAGAAGATGACCTTGAT	NA	False	NA	-1	True	NA	NA	NA	55120953	55135591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_+_55121162_55121253_55121342_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577_55134730_55135473
transcript_28535.known	chr14	+	1030	7	FSM	ENSMUSG00000022194.16	ENSMUST00000022808.14	1030	7	0	0	0	0	multi-exon	FALSE	canonical	3	2071	junction_6	205.041797906887	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGATATA	NA	False	NA	34	True	NA	NA	NA	55131604	55135626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55131952_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577_55134730_55135473
transcript_28537.known	chr14	+	700	7	FSM	ENSMUSG00000022194.16	ENSMUST00000172557.2	700	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	922.719651657834	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAGAAGATGACCTTGAT	NA	False	NA	-1	True	NA	NA	NA	55132074	55135591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55132127_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577_55134730_55135473
transcript_28538.known	chr14	+	1761	6	FSM	ENSMUSG00000022194.16	ENSMUST00000116476.9	1761	6	0	0	0	0	multi-exon	FALSE	canonical	3	2245	junction_1	149.688209288507	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAATATTTAAAAAAA	NA	False	NA	21	True	NA	NA	NA	55131604	55135613	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55131952_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577
transcript_2854.known	chr1	+	1692	14	FSM	ENSMUSG00000033021.17	ENSMUST00000113584.8	1692	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	88.7478310427522	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCTTGGACTCCTAC	NA	False	NA	12	True	AATAAA	-16	NA	75412586	75419817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_75412656_75412789_75412957_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
transcript_28540.known	chr14	+	912	6	FSM	ENSMUSG00000022194.16	ENSMUST00000141446.8	912	6	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	1010.69342532738	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCACTGTTTGGACTTGG	NA	False	NA	NA	False	NA	NA	NA	55132029	55135014	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55132127_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577
transcript_28542.known	chr14	+	3509	4	FSM	ENSMUSG00000089682.11	ENSMUST00000022806.10	3509	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	0.471404520791032	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTGAACAGGGTTTTGTG	NA	False	NA	25	True	AATAAA	-29	NA	55120833	55125691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55120964_55121253_55121342_55121830_55122271_55122840
transcript_28545.known	chr14	+	3813	3	FSM	ENSMUSG00000089682.11	ENSMUST00000133397.4	3813	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCTCTATAAATATAAATATA	NA	False	NA	NA	False	CATAAA	-43	NA	55120960	55125552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55120964_55121253_55121342_55121830
transcript_28546.known	chr14	+	645	3	FSM	ENSMUSG00000089682.11	ENSMUST00000227108.2	645	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	10	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTGGGACAAGTGCAGGA	NA	False	NA	NA	False	AAGAAA	-9	NA	55120963	55122189	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55121162_55121253_55121342_55121830
transcript_28547.known	chr14	+	1245	9	FSM	ENSMUSG00000092232.2	ENSMUST00000134077.2	1245	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	1193.27375316815	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAGATGACCTTGATGGA	NA	False	NA	2	True	NA	NA	NA	55120897	55135594	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55120964_55121253_55121342_55121830_55122271_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577_55134730_55135473
transcript_28548.known	chr14	+	826	8	FSM	ENSMUSG00000022194.16	ENSMUST00000172695.2	826	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	865.393127605092	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTGTGTATTAGGAGG	NA	False	NA	-3	True	NA	NA	NA	55131612	55135513	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55131765_55131847_55131952_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577_55134730_55135473
transcript_28549.known	chr14	-	2705	6	FSM	ENSMUSG00000022203.8	ENSMUST00000022813.8	2705	6	0	0	0	0	multi-exon	TRUE	canonical	3	20	junction_2	3.32264954516723	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTTGTCTTCAGTTCCTG	NA	False	NA	NA	False	NA	NA	NA	55163371	55153991	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55154990_55156785_55156876_55157151_55157872_55157961_55158103_55158359_55158639_55162894
transcript_28551.known	chr14	-	542	4	FSM	ENSMUSG00000040752.17	ENSMUST00000228731.2	542	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.4142135623731	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCCTGCACCCTGTCCT	NA	False	NA	NA	False	AATAAA	-14	NA	55181968	55179384	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55179462_55179809_55179945_55180604_55180701_55181734
transcript_28561.known	chr14	+	1200	11	FSM	ENSMUSG00000022204.10	ENSMUST00000022815.10	1200	11	0	0	0	0	multi-exon	FALSE	canonical	3	1001	junction_1	176.552230232303	8634	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACATTTTTTGCCATACAT	NA	False	NA	18	True	AATAAA	-23	NA	55252910	55261594	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55253046_55253625_55253686_55254522_55254595_55258510_55258649_55258850_55258936_55259012_55259066_55259277_55259402_55259494_55259664_55260506_55260664_55260792_55260851_55261445
transcript_28562.known	chr14	-	2673	22	FSM	ENSMUSG00000040701.17	ENSMUST00000036041.15	2673	22	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_4	12.8308372870802	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTAGCTGTGAAGTGGC	NA	False	NA	-22	True	AATAAA	-16	NA	55344050	55336306	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55336619_55336696_55336796_55337158_55337323_55337875_55338027_55338107_55338235_55338527_55338633_55338851_55338980_55339054_55339145_55339767_55339891_55339964_55340020_55340098_55340240_55340393_55340508_55340659_55340716_55340865_55340965_55341268_55341350_55341819_55341916_55342038_55342116_55342287_55342385_55342484_55342627_55342762_55342888_55343381_55343587_55343964
transcript_28566.known	chr14	-	2551	21	FSM	ENSMUSG00000040701.17	ENSMUST00000127870.8	2551	21	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_16	29.2801553957625	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTAGCTGTGAAGTGGC	NA	False	NA	-22	True	AATAAA	-16	NA	55344005	55336306	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55336619_55336696_55336796_55337158_55337323_55337875_55338027_55338107_55338235_55338527_55338633_55338851_55338980_55339054_55339145_55339767_55339891_55339964_55340020_55340098_55340240_55340393_55340508_55340659_55340716_55340865_55340965_55341268_55341350_55341819_55341916_55342287_55342385_55342484_55342627_55342762_55342888_55343381_55343587_55343964
transcript_28575.known	chr14	+	2830	2	FSM	ENSMUSG00000045691.15	ENSMUST00000050575.9	2830	2	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGGGTCTTTATTTCCGTT	NA	False	NA	7	True	AATAAA	-18	NA	55332240	55336443	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55333464_55334836
transcript_28576.known	chr14	-	461	2	FSM	ENSMUSG00000040701.17	ENSMUST00000139536.8	461	2	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTAGCTGTGAAGTGGC	NA	False	NA	-22	True	AATAAA	-16	NA	55336845	55336306	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55336619_55336696
transcript_28577.nnic	chr14	+	374	3	Intergenic	novelGene_38	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTAGCGCCACTCCCTGAT	NA	False	NA	NA	False	NA	NA	NA	55403193	55407882	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr14_+_55403242_55403414_55403561_55407702
transcript_28579.known	chr14	+	1268	11	FSM	ENSMUSG00000022209.13	ENSMUST00000022820.12	1268	11	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.640312423743285	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTCTGGACATGTTCCT	NA	False	NA	NA	False	AATAAA	-10	NA	55459463	55478892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55459526_55461224_55461307_55470774_55470852_55472099_55472254_55473485_55473664_55474687_55474790_55476204_55476276_55477260_55477313_55477815_55477951_55478269_55478326_55478593
transcript_28580.known	chr14	-	666	1	FSM	ENSMUSG00000060680.3	ENSMUST00000074642.3	666	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14471	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGCCCCCCCCCCCCCCCCC	5210	False	NA	NA	False	AATAAA	-21	NA	55658246	55657580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55657600_55658200
transcript_28582.known	chr14	+	1392	8	FSM	ENSMUSG00000022210.8	ENSMUST00000022821.8	1392	8	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	11.5987332172483	690	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTGCGTGTTTATTTCTC	NA	False	NA	11	True	AATAAA	-26	NA	55716214	55727797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55716491_55717482_55717661_55723573_55723676_55724549_55724621_55724716_55724769_55725040_55725176_55725616_55725673_55727275
transcript_28588.known	chr14	+	828	5	FSM	ENSMUSG00000022210.8	ENSMUST00000226168.2	828	5	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	5.40254569624358	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTAGTCTCTGGGTCCTTA	NA	False	NA	NA	False	AATAAA	-21	NA	55716331	55725034	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55716491_55717482_55717661_55723573_55723676_55724549_55724621_55724716
transcript_28589.nic	chr14	+	1024	4	ISM	ENSMUSG00000022210.8	ENSMUST00000226168.2	828	5	-106	6	-10	0	intron_retention	FALSE	canonical	3	56	junction_3	6.12825877028341	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTCCCTAGTCTCTGGG	NA	False	NA	NA	False	AATAAA	-15	NA	55716225	55725028	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_+_55716491_55717482_55717661_55723573_55723676_55724549
transcript_28590.known	chr14	+	498	3	FSM	ENSMUSG00000022210.8	ENSMUST00000227488.2	498	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	30.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGAGGGTACTGGTACTGAG	NA	False	NA	NA	False	ATTAAA	-24	NA	55716235	55724614	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55716491_55717482_55717661_55724549
transcript_28593.known	chr14	+	4625	10	FSM	ENSMUSG00000040618.8	ENSMUST00000226519.2	4625	10	0	0	0	0	multi-exon	FALSE	canonical	3	1356	junction_5	122.962304772893	877	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAGAAGAAACCCTTCA	8891	False	NA	NA	False	NA	NA	NA	55777722	55788699	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
transcript_28602.known	chr14	+	980	2	FSM	ENSMUSG00000040618.8	ENSMUST00000226514.2	980	2	0	0	0	0	multi-exon	FALSE	canonical	3	1574	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	9015	False	NA	NA	False	NA	NA	NA	55777846	55780718	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55777971_55779862
transcript_28603.known	chr14	+	2784	11	FSM	ENSMUSG00000040618.8	ENSMUST00000226352.2	2784	11	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_10	479.473419492676	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGGCAGTTGGAAGAATGG	9014	False	NA	4	True	NA	NA	NA	55777845	55787281	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761_55786112_55786411
transcript_28604.known	chr14	+	2417	9	FSM	ENSMUSG00000040618.8	ENSMUST00000226770.2	2417	9	0	0	0	0	multi-exon	FALSE	canonical	3	1491	junction_4	96.0676031500734	538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACAGGACTCCCCATGCT	9031	False	NA	27	True	ATTAAA	-24	NA	55777862	55786329	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
transcript_28607.known	chr14	+	2538	15	FSM	ENSMUSG00000022214.16	ENSMUST00000117236.8	2538	15	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_1	36.2303430166213	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTGTCTGTGTCACTTT	NA	False	NA	14	True	AATAAA	-19	NA	55797462	55807522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55797579_55798666_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
transcript_28608.known	chr14	+	2624	15	FSM	ENSMUSG00000022214.16	ENSMUST00000152681.8	2624	15	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	36.5692661191033	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTCTGTGTCTGTGTCA	NA	False	NA	10	True	AATAAA	-15	NA	55797990	55807518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55798085_55798531_55798877_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
transcript_28610.nic	chr14	+	2713	15	NIC	ENSMUSG00000022214.16	novel	2624	15	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_1	27.5910366989435	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCTGTGTCACTT	NA	False	NA	13	True	AATAAA	-18	NA	55797927	55807521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_+_55798085_55798531_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
transcript_28614.nic	chr14	+	2560	15	NIC	ENSMUSG00000022214.16	novel	2660	14	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	31.9189023390625	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCTGTGTCACTT	NA	False	NA	13	True	AATAAA	-18	NA	55797945	55807521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_+_55798085_55798666_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
transcript_28617.known	chr14	+	2601	15	FSM	ENSMUSG00000022214.16	ENSMUST00000072530.11	2601	15	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	34.3960278912243	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTCTGTGTCTGTGTCAC	NA	False	NA	11	True	AATAAA	-16	NA	55798385	55807519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55798433_55798531_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
transcript_28618.known	chr14	+	971	2	FSM	ENSMUSG00000022215.7	ENSMUST00000022826.7	971	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTCCTCCGATTCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	55813073	55814411	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55813405_55813771
transcript_28619.known	chr14	+	2660	14	FSM	ENSMUSG00000022214.16	ENSMUST00000128490.9	2660	14	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	16.6800735031656	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCTGTGTCACTT	NA	False	NA	13	True	AATAAA	-18	NA	55798427	55807521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
transcript_28620.known	chr14	+	882	12	FSM	ENSMUSG00000022216.18	ENSMUST00000174484.8	882	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	92.4488690489492	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCCCGTGGAGAAACCAAG	NA	False	NA	NA	False	NA	NA	NA	55815579	55818803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55815706_55815990_55816071_55817051_55817085_55817227_55817291_55817387_55817499_55817570_55817617_55817786_55817885_55818051_55818121_55818200_55818269_55818374_55818430_55818508_55818596_55818757
transcript_28627.known	chr14	+	1112	11	FSM	ENSMUSG00000022216.18	ENSMUST00000174259.8	1112	11	0	0	0	0	multi-exon	FALSE	canonical	1	117	junction_4	54.1775783881118	4703	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCATGTCTTTATTGTATG	NA	False	NA	14	True	AATAAA	-18	NA	55815816	55818985	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55816071_55817051_55817085_55817227_55817291_55817387_55817499_55817570_55817617_55817786_55817885_55818051_55818121_55818200_55818269_55818374_55818430_55818508_55818596_55818757
transcript_2863.known	chr1	+	1539	13	FSM	ENSMUSG00000033021.17	ENSMUST00000037796.14	1539	13	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	48.5514475124641	487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGCTTGGACTCCTACT	NA	False	NA	13	True	AATAAA	-17	NA	75412573	75419818	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_75412656_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
transcript_28640.known	chr14	+	1092	9	FSM	ENSMUSG00000022216.18	ENSMUST00000174791.8	1092	9	0	0	0	0	multi-exon	FALSE	canonical	1	117	junction_4	56.9731296314324	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTGAGCCCCCTCTCTCA	NA	False	NA	NA	False	NA	NA	NA	55815924	55818831	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55816071_55817051_55817085_55817227_55817291_55817387_55817499_55817570_55817617_55817786_55817885_55818051_55818269_55818374_55818430_55818508
transcript_28652.known	chr14	-	855	5	FSM	ENSMUSG00000022217.15	ENSMUST00000022828.9	855	5	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	3.69966214673719	711	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTATGTATTTATTGTGT	NA	False	NA	-5	True	AATAAA	-17	NA	55822759	55818978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55819201_55819337_55819433_55819512_55819583_55822135_55822213_55822368
transcript_28659.known	chr14	-	340	3	FSM	ENSMUSG00000022217.15	ENSMUST00000174352.8	340	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	49	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTATTGTGTTTGGGA	NA	False	NA	1	True	AATAAA	-23	NA	55822403	55818972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55819201_55822135_55822213_55822368
transcript_28666.known	chr14	-	962	11	FSM	ENSMUSG00000079197.11	ENSMUST00000161807.8	962	11	0	0	0	0	multi-exon	FALSE	canonical	3	915	junction_9	61.4455856835949	6915	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCTGTGTTGTTCATTGA	NA	False	NA	NA	False	AATAAA	-21	NA	55828544	55824897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55825023_55825110_55825198_55825496_55825552_55825689_55825758_55825900_55825970_55826757_55826856_55826937_55826969_55827075_55827163_55827489_55827553_55827951_55827985_55828298
transcript_28667.known	chr14	-	795	11	FSM	ENSMUSG00000079197.11	ENSMUST00000111378.10	795	11	0	0	0	0	multi-exon	FALSE	canonical	2	23	junction_10	298.855818079555	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTACCTGTGTTGTTCATTG	NA	False	NA	NA	False	AATAAA	-20	NA	55828558	55824898	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55825023_55825110_55825198_55825496_55825552_55825689_55825758_55825900_55825970_55826757_55826856_55826937_55826969_55827075_55827163_55827489_55827553_55827951_55827985_55828478
transcript_2867.nic	chr1	+	1824	13	NIC	ENSMUSG00000033021.17	novel	1692	14	NA	NA	2	0	intron_retention	FALSE	canonical	3	82	junction_1	58.385869199852	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCTTGGACTCCTAC	NA	False	NA	12	True	AATAAA	-16	NA	75412588	75419817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_75412957_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
transcript_28679.known	chr14	-	564	9	FSM	ENSMUSG00000079197.11	ENSMUST00000159687.2	564	9	0	0	0	0	multi-exon	FALSE	canonical	2	23	junction_8	330.296741582475	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTAGCCAAGGCTTCCAAG	NA	False	NA	NA	False	NA	NA	NA	55828570	55825528	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55825552_55825689_55825758_55825900_55825970_55826757_55826856_55826937_55826969_55827075_55827163_55827489_55827553_55827951_55827985_55828478
transcript_28681.known	chr14	+	3485	21	FSM	ENSMUSG00000047098.19	ENSMUST00000019443.15	3485	21	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_6	30.6031044176894	198	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCCTCAGCATCCCGGGG	4174	False	NA	38	True	AATAAA	-41	NA	55829164	55841150	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55829530_55829625_55829773_55829917_55830074_55830289_55830350_55830462_55830533_55831751_55831930_55832379_55832759_55832926_55833218_55833463_55833713_55833798_55833985_55834108_55834316_55836094_55836269_55836360_55836460_55836552_55836643_55838505_55838621_55838735_55838855_55839098_55839213_55839337_55839396_55840059_55840157_55840712_55840882_55840988
transcript_28685.known	chr14	+	2459	9	FSM	ENSMUSG00000002325.16	ENSMUST00000130697.8	2459	9	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	14.5086181285469	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGGTCATGTGGTGTCTA	NA	False	NA	9	True	NA	NA	NA	55841441	55847487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55841701_55842508_55842690_55843177_55843362_55843549_55843624_55843774_55843896_55843993_55844066_55844970_55845313_55846141_55846258_55846377
transcript_28691.nic	chr14	+	547	2	ISM	ENSMUSG00000002325.16	ENSMUST00000130697.8	2459	9	164	4527	164	-357	5prime_fragment	FALSE	canonical	3	21	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGAAAAGAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	55841605	55842960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_+_55841701_55842508
transcript_28692.known	chr14	+	2184	20	FSM	ENSMUSG00000002324.9	ENSMUST00000002395.8	2184	20	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_6	6.49738920505725	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCCTCTTTTTTTTTTT	1328	False	NA	9	True	ATTAAA	-21	NA	55855493	55862852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55855811_55856002_55856116_55856198_55856268_55856354_55856498_55856577_55856654_55857036_55857158_55858691_55858777_55859671_55859752_55859883_55860020_55860101_55860175_55860250_55860343_55860620_55860671_55860953_55861092_55861377_55861445_55861532_55861700_55861805_55861855_55862179_55862244_55862341_55862459_55862529_55862637_55862732
transcript_28694.known	chr14	-	3846	30	FSM	ENSMUSG00000002319.17	ENSMUST00000047131.16	3846	30	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_28	76.4571487859417	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTCCAGTGAGGCAGGAT	9745	False	NA	NA	False	AAAAAG	-5	NA	55873141	55862856	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55863499_55863610_55863681_55864796_55864902_55864991_55865125_55865241_55865451_55865562_55865689_55866048_55866097_55866250_55866445_55866523_55866633_55866716_55866775_55866850_55866929_55867205_55867325_55867434_55867547_55867751_55867873_55868054_55868169_55868273_55868388_55868598_55868729_55868888_55868998_55869489_55869600_55869756_55869811_55870417_55870583_55870790_55870875_55870961_55871064_55871168_55871235_55871471_55871652_55871736_55871867_55872461_55872504_55872588_55872669_55872819_55872907_55872986
transcript_28699.nnic	chr14	-	2384	6	NNC	ENSMUSG00000002320.16	novel	2164	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_5	127.714682006416	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCGTTGGAAGTTTTG	5175	False	NA	51	True	AATAAA	-19	NA	55880828	55873421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050_55880413_55880536
transcript_287.known	SIRV4	+	950	2	FSM	SIRV4C	SIRV410	950	2	0	0	0	0	multi-exon	FALSE	canonical	3	1621	junction_1	0	4416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTATATGTTGTTGCTG	NA	False	NA	NA	False	NA	NA	NA	1455	2771	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV4_+_1886_2251
transcript_28701.known	chr14	-	2164	6	FSM	ENSMUSG00000002320.16	ENSMUST00000120041.8	2164	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_5	125.802384715076	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCGTTGGAAGTTTTG	5295	False	NA	51	True	AATAAA	-19	NA	55880708	55873421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050_55880413_55880636
transcript_28702.nnic	chr14	-	2644	6	NNC	ENSMUSG00000002320.16	novel	2517	6	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_5	130.396318966449	55	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCGTTGGAAGTTTTG	4733	False	NA	51	True	AATAAA	-19	NA	55881270	55873421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050_55880413_55880718
transcript_28703.known	chr14	-	2517	6	FSM	ENSMUSG00000002320.16	ENSMUST00000122358.8	2517	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_5	133.851260733696	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCGTTGGAAGTTTTG	4740	False	NA	51	True	AATAAA	-19	NA	55881263	55873421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050_55880413_55880838
transcript_28704.nic	chr14	-	2314	6	NIC	ENSMUSG00000002320.16	novel	2517	6	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_5	134.620057940858	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCGTTGGAAGTTTTG	4728	False	NA	51	True	AATAAA	-19	NA	55881275	55873421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050_55880413_55881053
transcript_28706.known	chr14	-	2382	5	FSM	ENSMUSG00000002320.16	ENSMUST00000002391.15	2382	5	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_2	41.5060236592232	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATATTTGAACTTTTTA	5206	False	NA	-44	True	ATTAAA	-22	NA	55880797	55873516	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050
transcript_28717.known	chr14	-	708	3	FSM	ENSMUSG00000002320.16	ENSMUST00000138085.2	708	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	181	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAATTATATTTGCCAATGT	4775	False	NA	NA	False	NA	NA	NA	55881228	55878874	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55879046_55880050_55880413_55881053
transcript_28719.known	chr14	-	2271	2	FSM	ENSMUSG00000002320.16	ENSMUST00000127473.2	2271	2	0	0	0	0	multi-exon	FALSE	canonical	3	368	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATAGTAAAAATAGCG	5175	False	NA	NA	False	NA	NA	NA	55880828	55877552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55879046_55880050
transcript_28721.known	chr14	+	2749	1	FSM	ENSMUSG00000115222.2	ENSMUST00000228007.2	2749	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTGGTCCTGGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	55881060	55883809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55881100_55883800
transcript_28722.known	chr14	-	2148	6	FSM	ENSMUSG00000002320.16	ENSMUST00000121791.8	2148	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	136.928594530142	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTCTTTTTACAATTAT	5192	False	NA	4	True	NA	NA	NA	55880811	55873468	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050_55880413_55880708
transcript_28728.known	chr14	-	1730	5	FSM	ENSMUSG00000002329.8	ENSMUST00000226659.2	1730	5	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_3	25.3673017879316	653	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGGAAAGACAATTTTC	2342	False	NA	-23	True	AATAAA	-14	NA	55897908	55895350	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55896532_55896656_55896743_55896826_55896935_55897444_55897686_55897794
transcript_28729.known	chr14	-	1733	6	FSM	ENSMUSG00000002329.8	ENSMUST00000002400.7	1733	6	0	0	0	0	multi-exon	FALSE	canonical	3	347	junction_4	50.5750926840476	1520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTAAGCTGTATCTG	2285	False	NA	-8	True	AATAAA	-29	NA	55897965	55895335	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55896532_55896656_55896743_55896826_55896935_55897444_55897556_55897624_55897686_55897794
transcript_28730.known	chr14	+	1993	10	FSM	ENSMUSG00000002326.7	ENSMUST00000002397.7	1993	10	0	0	0	0	multi-exon	TRUE	canonical	3	97	junction_1	15.6828127988557	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCAAGTCTGGACTTCCT	NA	False	NA	NA	False	NA	NA	NA	55909691	55916657	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55909842_55910162_55910259_55910406_55910527_55912783_55912868_55913015_55913190_55914211_55914294_55914384_55914492_55914662_55914706_55915327_55915488_55915680
transcript_28742.known	chr14	-	516	4	FSM	ENSMUSG00000010376.16	ENSMUST00000228414.2	516	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	873.770501269578	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGGGTGCAGTGTTCCTG	NA	False	NA	-134	True	NA	NA	NA	55909334	55899842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55900083_55900871_55900955_55901268_55901379_55909251
transcript_28744.known	chr14	+	1658	3	FSM	ENSMUSG00000002326.7	ENSMUST00000226735.2	1658	3	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	16.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGTGT	NA	False	NA	NA	False	AATATA	-41	NA	55909397	55911524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55909842_55910162_55910259_55910406
transcript_28748.known	chr14	+	1807	1	FSM	ENSMUSG00000002326.7	ENSMUST00000226787.2	1807	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACCAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	AATATA	-38	NA	55909714	55911521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55909700_55911500
transcript_28749.known	chr14	-	824	4	FSM	ENSMUSG00000010376.16	ENSMUST00000010520.10	824	4	0	0	0	0	multi-exon	FALSE	canonical	3	1795	junction_3	42.0502345085283	25119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGACTCTTTCTTCTTGA	NA	False	NA	-11	True	AATAAA	-15	NA	55909581	55899719	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55900083_55900871_55900955_55901268_55901317_55909251
transcript_28750.known	chr14	-	514	5	FSM	ENSMUSG00000010376.16	ENSMUST00000163750.8	514	5	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	800.314742773117	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGGACTCTTTCTTCTT	NA	False	NA	-13	True	AATAAA	-13	NA	55909330	55899721	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55899858_55899914_55900083_55900871_55900955_55901268_55901317_55909251
transcript_28751.known	chr14	-	2791	15	FSM	ENSMUSG00000022218.17	ENSMUST00000002389.9	2791	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_14	57.2163812707015	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGTCTGTCTAGGCCAA	802	False	NA	-8	True	AATAAA	-37	NA	55950545	55937475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55937886_55941760_55941898_55942264_55942426_55942914_55943197_55943297_55943452_55943896_55943986_55946110_55946215_55946339_55946479_55946850_55947026_55947378_55947487_55947924_55948044_55948395_55948645_55949557_55949747_55949890_55950212_55950391
transcript_28752.known	chr14	-	2852	15	FSM	ENSMUSG00000022218.17	ENSMUST00000168729.8	2852	15	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_14	53.0521499304684	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAGGCCAAGAAGTATGGA	398	False	NA	2	True	AATAAA	-25	NA	55950949	55937465	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55937886_55941760_55941898_55942264_55942426_55942914_55943197_55943297_55943452_55943896_55943986_55946110_55946215_55946339_55946479_55946850_55947026_55947378_55947487_55947924_55948044_55948395_55948645_55949557_55949747_55949890_55950212_55950744
transcript_28753.known	chr14	-	2730	15	FSM	ENSMUSG00000022218.17	ENSMUST00000178034.9	2730	15	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_14	38.2803834241775	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGCTGTTTAGTAGTCCT	396	False	NA	-23	True	AATAAA	-22	NA	55950951	55937490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55937886_55941760_55941898_55942264_55942426_55942914_55943197_55943297_55943452_55943896_55943986_55946110_55946215_55946339_55946479_55946850_55947026_55947378_55947487_55947924_55948044_55948395_55948645_55949557_55949747_55949890_55950212_55950843
transcript_28755.known	chr14	-	2882	17	FSM	ENSMUSG00000040472.16	ENSMUST00000227061.2	2882	17	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_16	117.751443064406	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTGACCTGCCCAGGG	NA	False	NA	NA	False	ATTAAA	-18	NA	55959659	55952872	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959509
transcript_28756.known	chr14	-	1886	17	FSM	ENSMUSG00000040472.16	ENSMUST00000163889.3	1886	17	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_16	115.082697847027	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTGCCAAGCTACCATTA	NA	False	NA	-19	True	AATAAA	-19	NA	55959720	55953781	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959657
transcript_28765.known	chr14	-	2492	16	FSM	ENSMUSG00000040472.16	ENSMUST00000228826.2	2492	16	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_15	120.970777003741	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGAAAAGAAAAGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	55959633	55953333	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959509
transcript_28773.known	chr14	-	2547	16	FSM	ENSMUSG00000040472.16	ENSMUST00000169237.8	2547	16	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_12	87.1219834484959	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGAAAAGAAAAGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	55959633	55953333	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300
transcript_28776.known	chr14	-	1477	9	FSM	ENSMUSG00000002332.17	ENSMUST00000002403.10	1477	9	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_7	15.4833580014156	735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGAGTTCTCATTCTGT	NA	False	NA	0	True	AATAAA	-20	NA	55983147	55976476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55976878_55977008_55977090_55977392_55977463_55978183_55978331_55978639_55978773_55980910_55980991_55981114_55981259_55982374_55982546_55982897
transcript_28781.known	chr14	-	510	2	FSM	ENSMUSG00000002332.17	ENSMUST00000155969.8	510	2	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGAGTTCTCATTCTGT	NA	False	NA	0	True	AATAAA	-20	NA	55977117	55976476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55976878_55977008
transcript_28782.known	chr14	-	2502	8	FSM	ENSMUSG00000002332.17	ENSMUST00000128802.8	2502	8	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_1	11.8407804486298	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGAGTTCTCATTCTGT	NA	False	NA	0	True	AATAAA	-20	NA	55983056	55976476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55976878_55977008_55977090_55977392_55977463_55978183_55978331_55978639_55978773_55980910_55980991_55981114_55982546_55982897
transcript_28783.known	chr14	+	3694	10	FSM	ENSMUSG00000019297.10	ENSMUST00000019441.9	3694	10	0	0	0	0	multi-exon	FALSE	canonical	3	658	junction_1	26.1788718880958	625	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTGCAGTTCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	55983149	55992957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_55983478_55983617_55984068_55986788_55986900_55987448_55987591_55988509_55988703_55989514_55989656_55989993_55990120_55990268_55990506_55990716_55990823_55991097
transcript_28785.known	chr14	-	1212	5	FSM	ENSMUSG00000022219.11	ENSMUST00000001497.9	1212	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.06155281280883	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAGTCTTTACCAGTATG	NA	False	NA	NA	False	AATAAA	-25	NA	55995915	55991506	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_55992029_55992167_55992359_55992581_55992729_55995298_55995444_55995708
transcript_28787.known	chr14	-	1865	10	FSM	ENSMUSG00000022221.15	ENSMUST00000178399.3	1865	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_9	41.6620738209433	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGAGTCTGAGGTGTCAA	NA	False	NA	-3	True	AATAAA	-18	NA	56026314	56022453	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_56022809_56023318_56023377_56023482_56023816_56024039_56024108_56024213_56024382_56024570_56024618_56024738_56024897_56025280_56025591_56025694_56025822_56026073
transcript_28788.known	chr14	+	3267	10	FSM	ENSMUSG00000023411.13	ENSMUST00000024179.6	3267	10	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_9	7.13537527022325	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGGCTCCAGAGCTCTT	NA	False	NA	18	True	AATAAA	-18	NA	56062251	56071400	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_56062594_56063614_56064711_56066059_56066223_56066821_56067022_56067350_56067524_56067912_56068054_56069109_56069166_56069404_56069532_56069679_56070262_56071013
transcript_28791.known	chr14	+	7511	8	FSM	ENSMUSG00000075592.11	ENSMUST00000168479.3	7511	8	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	7.49965985623239	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAATGTTTAATTTTTTTT	NA	False	NA	15	True	AATAAA	-15	NA	56091473	56112193	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_56091884_56100409_56101069_56101189_56102591_56103415_56103547_56103667_56103765_56105477_56105580_56105870_56105973_56107584
transcript_28792.known	chr14	-	792	6	FSM	ENSMUSG00000022223.10	ENSMUST00000227163.2	792	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	71.6753793153549	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGGCTCCAGCATCTACAA	NA	False	NA	NA	False	NA	NA	NA	56137641	56135291	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_56135470_56135699_56135844_56136640_56136763_56137103_56137187_56137270_56137378_56137483
transcript_28798.known	chr14	-	1255	6	FSM	ENSMUSG00000022223.10	ENSMUST00000111325.5	1255	6	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_5	35.4547599061113	1008	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGGCTTCCGCTGTCTC	NA	False	NA	-6	True	AATAAA	-20	NA	56137715	56134739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_56135470_56135699_56135844_56136640_56136763_56137103_56137187_56137270_56137378_56137646
transcript_28800.known	chr14	-	1002	5	FSM	ENSMUSG00000040314.3	ENSMUST00000015583.2	1002	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTTGAACTCCTATGTC	NA	False	NA	NA	False	ATTAAA	-22	NA	56340031	56337337	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_56337608_56337999_56338255_56338430_56338567_56339053_56339202_56339838
transcript_28801.nic	chr14	-	781	3	ISM	ENSMUSG00000040314.3	ENSMUST00000015583.2	1002	5	1345	0	546	0	3prime_fragment	FALSE	canonical	1	1	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTTGAACTCCTATGTC	NA	False	NA	NA	False	ATTAAA	-22	NA	56338686	56337337	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_56337608_56337999_56338255_56338430
transcript_28802.nic	chr14	-	957	2	ISM	ENSMUSG00000040314.3	ENSMUST00000015583.2	1002	5	1345	0	546	0	intron_retention	FALSE	canonical	1	1	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTTGAACTCCTATGTC	NA	False	NA	NA	False	ATTAAA	-22	NA	56338686	56337337	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_56337608_56337999
transcript_28804.known	chr14	+	3950	23	FSM	ENSMUSG00000022229.4	ENSMUST00000007340.4	3950	23	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_18	2.50989776223246	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCAAGTGTCATTGTGGCA	NA	False	NA	5	True	AGTAAA	-14	NA	56602524	56626007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_56602747_56603405_56603556_56605839_56605900_56608232_56608434_56609195_56609310_56610035_56610171_56610299_56610418_56610644_56610914_56611883_56612083_56612216_56612327_56613594_56613730_56615739_56615933_56617404_56617581_56618219_56618357_56619953_56620105_56621523_56621693_56621782_56621938_56623249_56623374_56623568_56623715_56624304_56624439_56624606_56624709_56625096_56625189_56625349
transcript_28807.nnic	chr14	+	3508	26	NNC	ENSMUSG00000000365.10	novel	5264	37	NA	NA	42	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	105.930165675316	84	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATTGGTTTCCTTTTTT	NA	False	NA	8	True	ATTAAA	-16	NA	56640079	56726892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_56640210_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56726767
transcript_28809.nic	chr14	+	3564	26	NIC	ENSMUSG00000000365.10	novel	5264	37	NA	NA	58	0	combination_of_known_junctions	FALSE	canonical	3	349	junction_12	57.9852946875326	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATTGGTTTCCTTTTTT	NA	False	NA	8	True	ATTAAA	-16	NA	56640095	56726892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56726767
transcript_28815.nnic	chr14	+	3452	25	NIC	ENSMUSG00000000365.10	novel	5264	37	NA	NA	58	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	115.170043365837	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATTGGTTTCCTTTTTT	NA	False	NA	8	True	ATTAAA	-16	NA	56640095	56726892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_+_56640282_56643033_56643129_56658531_56658624_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56726767
transcript_28817.known	chr14	+	1609	11	FSM	ENSMUSG00000000365.10	ENSMUST00000225361.2	1609	11	0	0	0	0	multi-exon	FALSE	canonical	3	453	junction_4	33.16700167335	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCCTCCTGCCTCTTGCTT	NA	False	NA	NA	False	AATAAA	-15	NA	56640156	56679370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987
transcript_28819.nic	chr14	+	1318	10	ISM	ENSMUSG00000000365.10	ENSMUST00000225361.2	1609	11	-61	2974	58	-2974	5prime_fragment	FALSE	canonical	3	453	junction_4	32.6602412425979	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATAGTTAATGTTCATGT	NA	False	NA	NA	False	AATAAA	-18	NA	56640095	56676396	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060
transcript_28822.known	chr14	+	5264	37	FSM	ENSMUSG00000000365.10	ENSMUST00000095793.3	5264	37	0	0	0	0	multi-exon	TRUE	canonical	3	48	junction_25	208.622769314721	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAGTTCATGTTATTAAG	NA	False	NA	17	True	AATAAA	-18	NA	56640037	56762489	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56730574_56730862_56737884_56738049_56741374_56741495_56743383_56743465_56745274_56745401_56746735_56746793_56749667_56749785_56751492_56751662_56753792_56753929_56759830_56760021_56761762_56761863_56762269
transcript_28824.nic	chr14	+	674	5	ISM	ENSMUSG00000000365.10	ENSMUST00000225361.2	1609	11	-61	16125	58	-16125	5prime_fragment	FALSE	canonical	3	453	junction_4	41.3581914498204	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCACCAGATCCAAAGTCTA	NA	False	NA	NA	False	AATAAA	-45	NA	56640095	56663245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056
transcript_28826.nnic	chr14	+	562	4	NIC	ENSMUSG00000000365.10	novel	1609	11	NA	NA	58	-16125	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	256.130175236474	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCACCAGATCCAAAGTCTA	NA	False	NA	NA	False	AATAAA	-45	NA	56640095	56663245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_+_56640282_56643033_56643129_56658531_56658624_56663056
transcript_28829.nnic	chr14	+	544	3	NNC	ENSMUSG00000000365.10	novel	1609	11	NA	NA	58	-31441	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_2	273.5	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCCCATTGTGAACTCTGT	NA	False	NA	NA	False	AATACA	-38	NA	56640095	56647929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_56640282_56643033_56643129_56647666
transcript_28831.nnic	chr14	+	446	3	NNC	ENSMUSG00000000365.10	novel	1609	11	NA	NA	58	-31439	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_2	271	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCATTGTGAACTCTGTCT	NA	False	NA	NA	False	AATACA	-40	NA	56640095	56647931	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_56640282_56643033_56643129_56647766
transcript_28832.nnic	chr14	+	404	3	NNC	ENSMUSG00000000365.10	novel	1609	11	NA	NA	58	-21481	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	276	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAAAAAGCCATCATTT	NA	False	NA	NA	False	NA	NA	NA	56640095	56657889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_56640282_56643033_56643129_56657766
transcript_28833.nic	chr14	+	460	3	ISM	ENSMUSG00000000365.10	ENSMUST00000225361.2	1609	11	-61	20660	58	-20660	5prime_fragment	FALSE	canonical	3	532	junction_2	11	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTAGCCTATTGTTTATA	NA	False	NA	NA	False	ATTAAA	-18	NA	56640095	56658710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_+_56640282_56643033_56643129_56658531
transcript_28834.known	chr14	+	2077	14	FSM	ENSMUSG00000000365.10	ENSMUST00000223627.2	2077	14	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_12	51.7707737797252	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTTTAGAGTCAATTTTG	NA	False	NA	NA	False	AATAAA	-38	NA	56640153	56700889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480
transcript_28836.nnic	chr14	+	576	4	NNC	ENSMUSG00000054509.8	novel	6387	35	NA	NA	-2	-73777	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	10.0332779621949	30	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTTGCTTATGTGTGT	1085	False	NA	NA	False	NA	NA	NA	56813073	56823472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_56813188_56821615_56821749_56823013_56823210_56823339
transcript_28837.nic	chr14	+	706	3	ISM	ENSMUSG00000054509.8	ENSMUST00000161553.2	6387	35	-2	73779	-2	-73777	5prime_fragment	FALSE	canonical	3	20	junction_2	2	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTTGCTTATGTGTGT	1085	False	NA	NA	False	NA	NA	NA	56813073	56823472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_+_56813188_56821615_56821749_56823013
transcript_28839.known	chr14	+	2939	14	FSM	ENSMUSG00000079184.11	ENSMUST00000116468.2	2939	14	0	0	0	0	multi-exon	FALSE	canonical	3	627	junction_4	88.7108193370776	2605	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTACTAGTCGTTGTGA	1778	False	NA	32	True	ATTAAA	-18	NA	56905704	56934887	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_56906022_56909861_56910018_56911347_56912197_56913978_56914076_56916020_56916276_56922414_56922541_56922618_56922708_56925821_56925963_56926485_56926573_56928363_56928519_56930880_56931036_56933077_56933206_56934115_56934200_56934587
transcript_28840.known	chr14	-	4114	9	FSM	ENSMUSG00000021938.13	ENSMUST00000022507.13	4114	9	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_8	29.8556422640679	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATTGTTTTATTGGAAT	NA	False	NA	NA	False	AATAAA	-15	NA	57015773	56958166	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_56960738_56962762_56962933_56965976_56966035_56986291_56986401_56996086_56996172_56999290_56999488_57001605_57001702_57009161_57009464_57015247
transcript_28845.known	chr14	-	5351	8	FSM	ENSMUSG00000040123.18	ENSMUST00000111285.9	5351	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_6	24.4798959581623	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTCTTTGGTGAAAATGA	8821	False	NA	-13	True	AATAAA	-28	NA	57049173	57028044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_57031958_57034060_57034268_57035124_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57048196_57048317_57049048
transcript_28846.known	chr14	-	5357	8	FSM	ENSMUSG00000040123.18	ENSMUST00000173954.3	5357	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_7	29.0123126571166	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTCTTTGGTGAAAATGA	9073	False	NA	-13	True	AATAAA	-28	NA	57048921	57028044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_57031958_57034060_57034268_57035124_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57048196_57048317_57048790
transcript_28849.nic	chr14	-	2929	7	NIC	ENSMUSG00000040123.18	novel	5290	8	NA	NA	-33	405	combination_of_known_junctions	FALSE	canonical	3	42	junction_6	15.7630016882008	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTATTTTTGTTTTCTTGTG	8788	False	NA	1	True	NA	NA	NA	57049206	57030379	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_-_57031958_57034060_57034268_57035124_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57049048
transcript_28851.nic	chr14	-	2524	7	NIC	ENSMUSG00000040123.18	novel	2455	7	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_6	15.7630016882008	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACCAAAAAGAAGGAAA	8788	False	NA	NA	False	NA	NA	NA	57049206	57030784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_-_57031958_57034060_57034268_57035124_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57049048
transcript_28855.nic	chr14	-	1647	5	ISM	ENSMUSG00000040123.18	ENSMUST00000225699.2	2455	7	-52	3837	-33	21	5prime_fragment	FALSE	canonical	3	42	junction_4	17.7394334746068	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAATTTGTTGTAATAATT	8788	False	NA	NA	False	NA	NA	NA	57049206	57034621	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57049048
transcript_28856.known	chr14	-	2455	7	FSM	ENSMUSG00000040123.18	ENSMUST00000225699.2	2455	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	29.1547594742265	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACCAAAAAGAAGGAAA	8840	False	NA	NA	False	NA	NA	NA	57049154	57030784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_57031958_57034060_57034268_57035141_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57049048
transcript_28858.nnic	chr14	+	405	3	NNC	ENSMUSG00000021945.10	novel	1281	3	NA	NA	-100	-14257	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	53.5	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCAGTTCTTTTAAAAAAAA	NA	False	NA	NA	False	CATAAA	-17	NA	57124009	57127067	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_57124156_57125251_57125315_57126871
transcript_28859.known	chr14	+	1281	3	FSM	ENSMUSG00000021945.10	ENSMUST00000223669.2	1281	3	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	21.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTTTCATGTTTTTATT	NA	False	NA	NA	False	AATAAA	-17	NA	57124109	57141324	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_57124156_57125251_57125315_57140152
transcript_28861.known	chr14	+	2385	4	FSM	ENSMUSG00000096144.4	ENSMUST00000225045.2	2385	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTCCATGCCTGTTTTCA	2473	False	NA	NA	False	NA	NA	NA	57252590	57256439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_57252720_57253416_57253505_57253972_57254282_57254580
transcript_28862.known	chr14	-	2406	2	FSM	ENSMUSG00000046352.8	ENSMUST00000055698.8	2406	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAATGGTAAGTTTTTCTGG	NA	False	NA	NA	False	ATTAAA	-36	NA	57342159	57336056	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_57338229_57341925
transcript_28865.known	chr14	-	1497	8	FSM	ENSMUSG00000021947.12	ENSMUST00000022517.9	1497	8	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_7	4.40778532015472	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGACAATCTATTTCTACAC	NA	False	NA	37	True	AATAAA	-16	NA	57635986	57512449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_57513020_57513373_57513481_57523821_57523928_57541049_57541245_57550424_57550587_57600378_57600506_57620214_57620323_57635864
transcript_28868.nnic	chr14	-	1310	6	NNC	ENSMUSG00000021947.12	novel	1497	8	NA	NA	35567	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_5	9.57914401186244	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGACAATCTATTTCTACAC	NA	False	NA	37	True	AATAAA	-16	NA	57600346	57512449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_57513020_57513373_57513481_57523821_57523928_57541049_57541245_57550424_57550587_57600176
transcript_28870.known	chr14	-	899	4	FSM	ENSMUSG00000021947.12	ENSMUST00000225765.2	899	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	10.3387082795139	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAACAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57635953	57579080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_57579656_57600378_57600506_57620214_57620323_57635864
transcript_28871.known	chr14	+	349	1	FSM	ENSMUSG00000114321.2	ENSMUST00000223673.2	349	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCCTAGGCCTACCCACTA	NA	False	NA	NA	False	AATGAA	-16	NA	57600841	57601190	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_57600800_57601200
transcript_28873.known	chr14	+	3088	26	FSM	ENSMUSG00000040040.17	ENSMUST00000122063.8	3088	26	0	0	0	0	multi-exon	TRUE	canonical	3	32	junction_12	10.0195009855781	209	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCTGAGGCTAATGACTTC	NA	False	NA	13	True	AATAAA	-15	NA	57661518	57755393	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_57661645_57667994_57668091_57672251_57672315_57674683_57674741_57675698_57675753_57676322_57676387_57677162_57677233_57678387_57678479_57679334_57679440_57681811_57681915_57683021_57683137_57684997_57685230_57688127_57688199_57692917_57693005_57710431_57710532_57713499_57713587_57715347_57715535_57717353_57717463_57718113_57718265_57718852_57718969_57725028_57725082_57726348_57726415_57733629_57733737_57744661_57744729_57754437_57754549_57754793
transcript_28877.known	chr14	-	836	5	FSM	ENSMUSG00000021951.8	ENSMUST00000022518.8	836	5	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_4	52.3115665986023	1844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCTGTCATGAGGTTGAG	NA	False	NA	-9	True	AATAAA	-19	NA	57809026	57787054	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_57787337_57787818_57788100_57795490_57795574_57803378_57803542_57808999
transcript_28879.nnic	chr14	-	723	4	NIC	ENSMUSG00000021951.8	novel	880	5	NA	NA	-6	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_3	119.268138615847	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTGTCATGAGGTTGAGA	NA	False	NA	-8	True	AATAAA	-20	NA	57809075	57787053	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_-_57787337_57787818_57788100_57795490_57795574_57808999
transcript_28883.known	chr14	-	8680	23	FSM	ENSMUSG00000021952.17	ENSMUST00000174545.9	8680	23	0	0	0	0	multi-exon	FALSE	canonical	2	168	junction_17	47.2351467755642	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTGGTTTGACCATGTG	NA	False	NA	-18	True	ACTAAA	-13	NA	57902887	57814977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_57819926_57822056_57822150_57823323_57823442_57824036_57824168_57825409_57825529_57827397_57827579_57828242_57828537_57831284_57831460_57834431_57834602_57835342_57835503_57839945_57840124_57841042_57841189_57841820_57841964_57842579_57842757_57850729_57850905_57851143_57851302_57855587_57855701_57866813_57866968_57867672_57867790_57875675_57875815_57880538_57880681_57885875_57885982_57902344
transcript_28884.known	chr14	-	1078	5	FSM	ENSMUSG00000021952.17	ENSMUST00000172524.2	1078	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	126.317061397105	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAGAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	57902887	57879485	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_57879618_57880538_57880681_57880791_57880947_57885875_57885982_57902344
transcript_28885.known	chr14	-	707	4	FSM	ENSMUSG00000021952.17	ENSMUST00000172539.8	707	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	139.907906217705	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAGAGAGATGGCTCAGCA	NA	False	NA	NA	False	AAAAAG	-15	NA	57902421	57879235	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_57879618_57880538_57880681_57885875_57885982_57902344
transcript_28886.known	chr14	-	1765	4	FSM	ENSMUSG00000021952.17	ENSMUST00000173172.2	1765	4	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	124.493641069199	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAGAAAAGGAAAAA	NA	False	NA	NA	False	NA	NA	NA	57902424	57879256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_57880681_57880791_57880947_57885875_57885982_57902344
transcript_28888.known	chr14	-	1893	3	FSM	ENSMUSG00000021952.17	ENSMUST00000173940.8	1893	3	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_1	39	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGGTTAGAGAGATGGC	NA	False	NA	NA	False	AAAAAG	-9	NA	57902692	57879241	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_57880681_57885875_57885982_57902344
transcript_28889.known	chr14	-	3456	23	FSM	ENSMUSG00000021952.17	ENSMUST00000089482.12	3456	23	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_17	74.741551942523	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAACAGAGCTATAAGCTT	NA	False	NA	NA	False	NA	NA	NA	57902413	57819727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_57819926_57822056_57822150_57823323_57823442_57824036_57824168_57825409_57825529_57827397_57827579_57828242_57828537_57831284_57831460_57834431_57834602_57835342_57835503_57839945_57840124_57841042_57841189_57841820_57841964_57842579_57842757_57850729_57850905_57851143_57851302_57855587_57855704_57866816_57866968_57867672_57867790_57875675_57875815_57880538_57880681_57885875_57885982_57902344
transcript_28890.known	chr14	+	207	1	FSM	ENSMUSG00000092358.2	ENSMUST00000172474.2	207	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGCAACAAGAAAATATTT	NA	False	NA	NA	False	NA	NA	NA	57935469	57935676	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_57935500_57935700
transcript_28896.known	chr14	-	2260	9	FSM	ENSMUSG00000021965.4	ENSMUST00000022536.3	2260	9	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_3	28.547110186497	354	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTTTATGTTGCCAACTC	NA	False	NA	-7	True	AATAAA	-19	NA	58063620	58044017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_58044989_58045431_58045536_58047399_58047601_58049036_58049123_58054101_58054209_58057610_58058020_58059492_58059659_58060357_58060420_58063466
transcript_28902.known	chr14	+	459	3	FSM	ENSMUSG00000021963.18	ENSMUST00000111269.2	459	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1417.5	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCCCACAACTTCCGCAG	NA	False	NA	NA	False	AATAAA	-14	NA	58035674	58042426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_58035812_58035944_58036055_58042214
transcript_28903.known	chr14	+	521	3	FSM	ENSMUSG00000021963.18	ENSMUST00000143600.2	521	3	0	0	0	0	multi-exon	FALSE	canonical	3	2870	junction_1	123.5	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGGACTTTGCCATTAAGC	NA	False	NA	NA	False	AATAAA	-21	NA	58035882	58039604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_58036055_58038950_58039074_58039378
transcript_28904.known	chr14	+	519	1	FSM	ENSMUSG00000021967.5	ENSMUST00000224313.2	519	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	351	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGTTGTCTCATACGGAA	NA	False	NA	25	True	ATTAAA	-17	NA	58063886	58064405	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_58063900_58064400
transcript_28909.known	chr14	-	2179	14	FSM	ENSMUSG00000021969.9	ENSMUST00000226057.2	2179	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	86.2468591315601	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAAAAGAGAATGAAAG	NA	False	NA	NA	False	NA	NA	NA	58127679	58073148	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_58074104_58075047_58075125_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58087601_58087638_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
transcript_28912.nnic	chr14	-	1835	13	NNC	ENSMUSG00000021969.9	novel	5186	13	NA	NA	-78	652	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	63.7296808576838	108	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAGAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	58127811	58072496	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_58073012_58075047_58075125_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
transcript_28913.known	chr14	-	5186	13	FSM	ENSMUSG00000021969.9	ENSMUST00000089473.5	5186	13	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_2	22.1702691308277	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGAAATCTGTTACAGGTG	NA	False	NA	58	True	NA	NA	NA	58127733	58070159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_58074104_58075047_58075125_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
transcript_28921.nnic	chr14	-	1762	12	NNC	ENSMUSG00000021969.9	novel	5186	13	NA	NA	-78	656	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	65.9081504635099	100	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	58127811	58072492	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_58073012_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
transcript_28925.nic	chr14	-	2850	12	NIC	ENSMUSG00000021969.9	novel	5186	13	NA	NA	-78	652	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	61.0282416672129	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAGAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	58127811	58072496	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_-_58074104_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
transcript_28930.nic	chr14	-	1636	12	NIC	ENSMUSG00000021969.9	novel	5186	13	NA	NA	-78	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	61.0282416672129	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAATGATGCCCAAATCA	NA	False	NA	NA	False	AAAAAG	-38	NA	58127811	58073710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_-_58074104_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
transcript_2894.known	chr1	+	554	3	FSM	ENSMUSG00000033021.17	ENSMUST00000135453.2	554	3	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_2	12	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCTTGGACTCCTAC	NA	False	NA	12	True	AATAAA	-16	NA	75418809	75419817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_75418922_75419087_75419257_75419544
transcript_28945.known	chr14	+	907	3	FSM	ENSMUSG00000097303.3	ENSMUST00000224786.2	907	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGCAAGACTGTTTACTG	NA	False	NA	NA	False	AATAAA	-14	NA	58236840	58241154	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_58236920_58239766_58239877_58240436
transcript_28948.known	chr14	+	2163	13	FSM	ENSMUSG00000035469.18	ENSMUST00000174009.8	2163	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	114.373747716277	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATGTTTTACATGTGTT	NA	False	NA	54	True	NA	NA	NA	59438682	59472974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_59439034_59443073_59443172_59447465_59447544_59447883_59448035_59455044_59455212_59458865_59459025_59460641_59460750_59462081_59462225_59463756_59463948_59465703_59465831_59467335_59467488_59467858_59467990_59472667
transcript_28953.known	chr14	+	3903	12	FSM	ENSMUSG00000035469.18	ENSMUST00000043227.13	3903	12	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_1	28.7856139459962	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTACAGTTGTGGTTG	NA	False	NA	6	True	AATAAA	-16	NA	59438676	59474714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_59439034_59447373_59447544_59447883_59448035_59455044_59455212_59458865_59459025_59460641_59460750_59462081_59462225_59463756_59463948_59465703_59465831_59467335_59467488_59467858_59467990_59472667
transcript_28956.known	chr14	+	1499	5	FSM	ENSMUSG00000035469.18	ENSMUST00000095778.8	1499	5	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_4	130.989264827313	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGTTGGCCTCTTTGTTT	NA	False	NA	NA	False	AGTAAA	-17	NA	59438931	59459975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_59439034_59447373_59447544_59447883_59448035_59455044_59455212_59459066
transcript_2897.known	chr1	-	4131	12	FSM	ENSMUSG00000026211.19	ENSMUST00000155084.8	4131	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	17.2564516621159	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTGTATTTATTTTTTG	NA	False	NA	NA	False	CATAAA	-19	NA	75482285	75467177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_75468102_75469149_75469438_75469513_75469790_75470428_75470702_75473651_75473925_75474718_75474992_75476545_75476819_75478602_75478900_75479556_75479860_75480010_75480263_75480340_75480611_75481856
transcript_28985.known	chr14	-	2995	14	FSM	ENSMUSG00000071350.13	ENSMUST00000161459.8	2995	14	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_12	10.965249034588	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTTTTGTGATTATTAT	NA	False	NA	NA	False	TATAAA	-13	NA	59678333	59639457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_59639866_59644094_59644184_59646626_59646968_59649539_59649634_59650160_59650261_59650929_59651129_59653147_59653318_59654857_59654975_59656449_59657011_59660836_59660934_59663937_59664004_59668591_59668718_59674885_59675215_59678035
transcript_28986.known	chr14	-	1774	5	FSM	ENSMUSG00000071350.13	ENSMUST00000111253.3	1774	5	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_3	10.4043260233424	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTGCTAGTTTGTTTCTT	NA	False	NA	NA	False	AATAAA	-20	NA	59678324	59659969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_59660934_59663937_59664004_59668591_59668718_59674885_59675215_59678035
transcript_2899.nic	chr1	+	740	3	ISM	ENSMUSG00000006576.17	ENSMUST00000027415.12	3926	23	10652	-193	5439	193	3prime_fragment	FALSE	canonical	3	11	junction_1	3.5	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGCCTCATTTTCTTGG	8798	False	NA	NA	False	NA	NA	NA	75533791	75535727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_75534087_75534270_75534445_75535456
transcript_28991.known	chr14	+	3037	11	FSM	ENSMUSG00000021981.11	ENSMUST00000022553.6	3037	11	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_1	43.2892596379287	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTTGGTCTCATTCCTCT	NA	False	NA	5	True	AATAAA	-12	NA	59678429	59786352	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_59678468_59696542_59696691_59699083_59699152_59734251_59734394_59736992_59737158_59743713_59743833_59757014_59757184_59764204_59764265_59766290_59766357_59776510_59776655_59784434
transcript_28993.known	chr14	+	1380	11	FSM	ENSMUSG00000021981.11	ENSMUST00000225595.2	1380	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	95.6287090783934	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGTGTCATCTTTACT	NA	False	NA	NA	False	AATAAA	-18	NA	59678429	59823213	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_59678468_59696542_59696691_59699083_59699152_59734251_59734394_59736992_59737158_59743713_59743833_59757014_59757184_59764204_59764265_59766290_59766357_59776510_59776655_59822952
transcript_28999.known	chr14	+	3546	5	FSM	ENSMUSG00000021981.11	ENSMUST00000224281.2	3546	5	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_1	44.997222136483	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59678429	59740142	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_59678468_59696542_59696691_59699083_59699152_59734251_59734394_59736992
transcript_29.known	ERCC-00062	+	1007	1	FSM	ERCC-00062A	DQ516786	1007	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	365	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	AATACA	-36	NA	0	1007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00062_+_0_1000
transcript_290.known	SIRV4	-	617	2	FSM	SIRV4B	SIRV406	617	2	0	0	0	0	multi-exon	FALSE	canonical	3	2584	junction_1	0	4068	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATTTAAAAATAGCCTGT	NA	False	NA	NA	False	NA	NA	NA	5158	3637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV4_-_4104_5007
transcript_2900.nic	chr1	+	678	2	NIC	ENSMUSG00000006576.17	novel	6227	21	NA	NA	5685	193	intron_retention	FALSE	canonical	3	18	junction_1	0	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGCCTCATTTTCTTGG	9044	False	NA	NA	False	NA	NA	NA	75534037	75535727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_75534445_75535456
transcript_29003.known	chr14	-	2202	10	FSM	ENSMUSG00000021982.15	ENSMUST00000056997.15	2202	10	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	34.1362556619393	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAACAAATAAAATGTTA	NA	False	NA	-32	True	NA	NA	NA	59835393	59801424	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_59802045_59806396_59806458_59811095_59811286_59813182_59813353_59818773_59818824_59823487_59824058_59827236_59827415_59829909_59829985_59834310_59834409_59835203
transcript_29006.known	chr14	-	1892	10	FSM	ENSMUSG00000021982.15	ENSMUST00000171683.3	1892	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	37.821543276319	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAGCTTCATAGTGTATA	NA	False	NA	NA	False	AATAAA	-29	NA	59835393	59805177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_59805488_59806396_59806458_59811095_59811286_59813182_59813353_59818773_59818824_59823487_59824058_59827236_59827415_59829909_59829985_59834310_59834409_59835203
transcript_2901.known	chr1	-	3612	17	FSM	ENSMUSG00000026235.15	ENSMUST00000188797.7	3612	17	0	0	0	0	multi-exon	TRUE	canonical	3	112	junction_14	22.2548274257519	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGAAAATGGATTTTTA	NA	False	NA	NA	False	NA	NA	NA	77491725	77349775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_77350485_77351407_77351564_77354050_77354245_77357500_77357651_77359505_77359716_77360159_77360222_77364433_77364620_77365109_77365224_77366669_77366729_77375130_77375243_77376274_77376435_77377836_77377962_77403187_77403527_77421501_77421658_77483184_77483849_77488319_77488388_77491577
transcript_29012.known	chr14	-	2579	5	FSM	ENSMUSG00000021982.15	ENSMUST00000225103.2	2579	5	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_3	7.29297607290741	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAATAGGGTCGTTTTG	NA	False	NA	NA	False	TATAAA	-37	NA	59835395	59822021	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_59824058_59827236_59827415_59829909_59829985_59834310_59834409_59835203
transcript_29021.known	chr14	-	3913	15	FSM	ENSMUSG00000114797.2	ENSMUST00000041905.8	3913	15	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_2	25.178546099278	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTGTAGGTCTCAGCA	NA	False	NA	-16	True	AATAAA	-18	NA	60488956	60455526	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_60457608_60459031_60459128_60460765_60460865_60466157_60466360_60469522_60469606_60469995_60470115_60471678_60471759_60475900_60476076_60476929_60476996_60478222_60478248_60479995_60480107_60480805_60480944_60481962_60482113_60484772_60484916_60488611
transcript_29024.known	chr14	+	3813	14	FSM	ENSMUSG00000021987.10	ENSMUST00000022563.9	3813	14	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_3	13.0256915000032	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGAGTGTTTTTCTTTT	NA	False	NA	9	True	ATTAAA	-13	NA	60502676	60539819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_60502811_60514577_60514695_60517531_60517695_60519385_60519544_60522365_60522495_60526991_60527127_60529442_60529576_60530366_60530477_60530832_60530959_60533568_60533619_60534022_60534224_60535511_60535644_60536363_60536491_60537721
transcript_29027.known	chr14	+	3015	19	FSM	ENSMUSG00000021993.11	ENSMUST00000063562.9	3015	19	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_10	24.3726850752595	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGGTATCTGGTAGCGC	NA	False	NA	NA	False	ATTAAA	-26	NA	61022021	61141678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_61022320_61024743_61024918_61025602_61025692_61028335_61028423_61033620_61033685_61039569_61039753_61040261_61040419_61046416_61046466_61048547_61048609_61052401_61052455_61064747_61064902_61066835_61066914_61068561_61068767_61071433_61071544_61080656_61080732_61083832_61083953_61109466_61109589_61112682_61112757_61140816
transcript_29029.nnic	chr14	+	875	6	NNC	ENSMUSG00000021993.11	novel	3015	19	NA	NA	53926	-618	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	108.296999035061	77	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCGTGTCTCACCTGCTTG	NA	False	NA	NA	False	AATAAA	-18	NA	61076012	61141060	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_61076253_61080656_61080732_61083832_61083953_61109466_61109589_61112682_61112757_61140816
transcript_29030.known	chr14	-	4051	10	FSM	ENSMUSG00000060548.14	ENSMUST00000111234.10	4051	10	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_9	13.3813948598441	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAGAACAGAAAAGG	NA	False	NA	NA	False	NA	NA	NA	61283918	61201484	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_61203915_61208277_61208681_61209429_61209533_61210950_61211077_61212038_61212204_61234053_61234140_61242523_61242703_61261617_61261729_61262192_61262286_61283563
transcript_29031.known	chr14	-	3958	10	FSM	ENSMUSG00000060548.14	ENSMUST00000111236.4	3958	10	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_9	15.475986974649	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAATTGATACTTGTTA	NA	False	NA	-26	True	AATACA	-32	NA	61275399	61201323	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_61203915_61208277_61208681_61209429_61209533_61210950_61211077_61212038_61212204_61234053_61234140_61242523_61242703_61261617_61261729_61262192_61262286_61275298
transcript_29034.nnic	chr14	-	1041	6	NNC	ENSMUSG00000060548.14	novel	1087	6	NA	NA	-6327	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	25.9615099714943	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAACATTTCCATCCTTTC	NA	False	NA	NA	False	AATAAA	-14	NA	61219661	61203799	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_61203915_61208277_61208681_61209429_61209533_61210950_61211077_61212038_61212204_61219532
transcript_29035.known	chr14	-	744	6	FSM	ENSMUSG00000060548.14	ENSMUST00000225730.2	744	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_5	18.2756668824971	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCTGGCTGAGACCTAAG	NA	False	NA	NA	False	NA	NA	NA	61275340	61211970	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_61212204_61234053_61234140_61242523_61242703_61261617_61261729_61262192_61262286_61275298
transcript_29036.known	chr14	-	1239	6	FSM	ENSMUSG00000060548.14	ENSMUST00000224371.2	1239	6	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_5	15.3414471286121	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTCTTAGCAAATTATTT	NA	False	NA	NA	False	AATAAA	-16	NA	61283939	61211809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_61212204_61234053_61234140_61242523_61242703_61261617_61261729_61262192_61262286_61283563
transcript_29038.nic	chr14	-	713	5	ISM	ENSMUSG00000060548.14	ENSMUST00000225730.2	744	6	-133	22014	-74	-22014	5prime_fragment	FALSE	canonical	3	37	junction_4	19.6532440070335	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGTGTCTAGAAAGCCCT	NA	False	NA	NA	False	NA	NA	NA	61275473	61233984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_61234140_61242523_61242703_61261617_61261729_61262192_61262286_61275298
transcript_29039.nic	chr14	-	1311	5	ISM	ENSMUSG00000060548.14	ENSMUST00000224371.2	1239	6	-397	22175	-397	-22014	5prime_fragment	FALSE	canonical	3	46	junction_4	15.833114033569	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGTGTCTAGAAAGCCCT	NA	False	NA	NA	False	NA	NA	NA	61284336	61233984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_61234140_61242523_61242703_61261617_61261729_61262192_61262286_61283563
transcript_2904.known	chr1	+	1849	1	FSM	ENSMUSG00000101849.2	ENSMUST00000189147.2	1849	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAAGTCTCGATTCTTT	NA	False	NA	NA	False	ATTAAA	-23	NA	77491916	77493765	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_77491900_77493800
transcript_29043.nnic	chr14	-	570	3	NNC	ENSMUSG00000060548.14	novel	1239	6	NA	NA	-29688	-22014	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	38	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGTGTCTAGAAAGCCCT	NA	False	NA	NA	False	NA	NA	NA	61243022	61233984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_61234140_61242523_61242703_61242786
transcript_29045.known	chr14	+	1482	2	FSM	ENSMUSG00000043157.9	ENSMUST00000055159.8	1482	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTGCATGCATGTGTG	NA	False	NA	NA	False	AATAAA	-18	NA	61547201	61549385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_61547387_61548088
transcript_29047.known	chr14	-	4069	17	FSM	ENSMUSG00000021929.10	ENSMUST00000022496.9	4069	17	0	0	0	0	multi-exon	TRUE	canonical	2	379	junction_16	73.5790391347971	253	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACATTGAAAGACTTATT	6546	False	NA	-12	True	AATAAA	-22	NA	61677323	61602659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_61605179_61605576_61605672_61607831_61607995_61608150_61608223_61608319_61608425_61610406_61610536_61611732_61611865_61620683_61620729_61622036_61622207_61622551_61622639_61624872_61624959_61628612_61628709_61628847_61628901_61628996_61629027_61629204_61629295_61640446_61640492_61677171
transcript_29056.known	chr14	-	399	1	FSM	ENSMUSG00000115595.2	ENSMUST00000228851.2	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	149	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATTTTGGCTCATTTTT	NA	False	NA	NA	False	AAGAAA	-4	NA	61704815	61704416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_61704400_61704800
transcript_2906.known	chr1	+	4002	5	FSM	ENSMUSG00000032908.10	ENSMUST00000036172.10	4002	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	2.12132034355964	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTTTCTGTGGATTT	NA	False	NA	NA	False	AATAAA	-44	NA	78286981	78396926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_78287140_78336707_78336867_78367111_78367292_78369995_78370086_78393511
transcript_29061.known	chr14	-	1459	4	FSM	ENSMUSG00000021930.15	ENSMUST00000100496.5	1459	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	60.8075287736277	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATTCAGTATTATATTTA	NA	False	NA	NA	False	AATAAA	-13	NA	61794207	61771753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_61772691_61783130_61783298_61787192_61787310_61793969
transcript_29064.nnic	chr14	+	1952	2	Genic_Genomic	ENSMUSG00000114902.2	novel	864	1	NA	NA	-2283	156	multi-exon	FALSE	canonical	2	2	junction_1	0	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTTGCTTAGAAGTGTTA	NA	False	NA	NA	False	AATAAA	-31	NA	61793963	61797266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr14_+_61794890_61796240
transcript_29067.known	chr14	-	463	5	FSM	ENSMUSG00000097589.10	ENSMUST00000182325.8	463	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	6.28490254498827	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTACACCGACTGACATTTA	NA	False	NA	NA	False	NA	NA	NA	61886236	61841172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_61841256_61869885_61869933_61872973_61873041_61880808_61880905_61886066
transcript_29068.known	chr14	-	1442	5	FSM	ENSMUSG00000097589.10	ENSMUST00000182768.8	1442	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	7.69334127671456	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATACACTACTGTATGACA	NA	False	NA	NA	False	NA	NA	NA	61919822	61840287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_61841256_61869885_61869933_61872973_61873041_61880808_61880905_61919558
transcript_2907.known	chr1	-	2036	18	FSM	ENSMUSG00000026245.17	ENSMUST00000170217.8	2036	18	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	335.563627493931	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCATGGCTCTGCTACTAT	NA	False	NA	NA	False	AATAAA	-18	NA	78465496	78394611	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_78394860_78401829_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456749_78458944_78459001_78465421
transcript_29071.known	chr14	-	637	5	FSM	ENSMUSG00000097589.10	ENSMUST00000183245.8	637	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	7.17635004720366	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAGTTTGTATGTTTCTT	NA	False	NA	-4	True	AATAAA	-17	NA	61919774	61866054	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_61866266_61869885_61869933_61872973_61873041_61880808_61880905_61919558
transcript_29072.nic	chr14	-	558	4	ISM	ENSMUSG00000097589.10	ENSMUST00000183079.8	535	5	-60	7111	0	5	5prime_fragment	FALSE	canonical	2	7	junction_3	4.92160768674447	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCTGTACGCTTTTATT	NA	False	NA	NA	False	AATAAA	-18	NA	61886271	61869742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_61869933_61872973_61873041_61880808_61880905_61886066
transcript_29076.known	chr14	+	1619	3	FSM	ENSMUSG00000035235.14	ENSMUST00000165015.9	1619	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	100	648	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGAGTTTGTGCTGTG	NA	False	NA	18	True	AATAAA	-16	NA	61835695	61843395	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_61835796_61837242_61837345_61841978
transcript_29077.known	chr14	+	1550	3	FSM	ENSMUSG00000035235.14	ENSMUST00000039562.8	1550	3	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_1	49	650	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGAGTTTGTGCTGTG	NA	False	NA	18	True	AATAAA	-16	NA	61836988	61843395	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_61837020_61837242_61837345_61841978
transcript_29080.known	chr14	-	3544	3	FSM	ENSMUSG00000097589.10	ENSMUST00000180917.9	3544	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	6	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGACTTGCTTTTCTCG	NA	False	NA	NA	False	AATAAA	-24	NA	61886271	61869797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_61873041_61880808_61880905_61886066
transcript_29081.known	chr14	-	666	3	FSM	ENSMUSG00000097589.10	ENSMUST00000182286.2	666	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	9.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAGGCTTATACATTTC	NA	False	NA	NA	False	ATTAAA	-37	NA	61919763	61872675	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_61873041_61880808_61880905_61919558
transcript_29097.known	chr14	-	1314	2	FSM	ENSMUSG00000048281.10	ENSMUST00000063169.10	1314	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCGTCTAGCTTCTCTTAC	667	False	NA	NA	False	ATTAAA	-13	NA	62530412	62513679	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_62514558_62529976
transcript_29098.known	chr14	+	1494	11	FSM	ENSMUSG00000021932.14	ENSMUST00000022499.13	1494	11	0	0	0	0	multi-exon	TRUE	canonical	3	538	junction_2	112.951139879153	2828	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCATAGTTTTGTTGCT	NA	False	NA	5	True	AATAAA	-17	NA	62569516	62610441	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_62569626_62584016_62584092_62585969_62586078_62587848_62587926_62590971_62591087_62597911_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62607920_62608002_62609808
transcript_29102.known	chr14	+	6646	12	FSM	ENSMUSG00000014547.11	ENSMUST00000014691.10	6646	12	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_9	5.80111132128866	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGTTGTATCCTTGTCA	NA	False	NA	22	True	AATAAA	-22	NA	63075126	63198958	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_63075507_63123258_63123327_63137703_63137778_63162578_63162634_63167676_63167828_63171738_63171852_63181469_63181597_63186091_63186198_63189363_63189466_63190460_63190592_63192309_63192419_63193728
transcript_29108.nic	chr14	+	588	4	NIC	ENSMUSG00000054763.10	novel	618	3	NA	NA	-95	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_3	14.3527000944073	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCACCCCGTGGTCTTCCTT	NA	False	NA	-7	True	AATAAA	-2	NA	63284344	63286024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_+_63284500_63284892_63285068_63285676_63285752_63285841
transcript_29109.known	chr14	-	721	3	FSM	ENSMUSG00000075571.9	ENSMUST00000111209.2	721	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	0.5	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCGAAGTATTGAGTGAG	NA	False	NA	NA	False	AATAAA	-20	NA	63287404	63271921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_63272277_63273378_63273551_63287210
transcript_29110.known	chr14	+	618	3	FSM	ENSMUSG00000054763.10	ENSMUST00000067990.8	618	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	3	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCCGTTTCAAATTCACC	NA	False	NA	28	True	AATAAA	-37	NA	63284439	63286059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_63284500_63284892_63285068_63285676
transcript_29113.known	chr14	+	257	2	FSM	ENSMUSG00000054763.10	ENSMUST00000186438.2	257	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCACCCCGTGGTCTTCCTT	NA	False	NA	-7	True	AATAAA	-2	NA	63285677	63286024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_63285752_63285841
transcript_29123.known	chr14	+	1269	1	FSM	ENSMUSG00000021939.9	ENSMUST00000225639.2	1269	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	277	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAACTCA	NA	False	NA	NA	False	NA	NA	NA	63359962	63361231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_63360000_63361200
transcript_29124.known	chr14	+	4743	10	FSM	ENSMUSG00000021939.9	ENSMUST00000006235.9	4743	10	0	0	0	0	multi-exon	FALSE	canonical	3	6333	junction_1	582.432086858605	4965	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTTTCCTGTCATCATT	NA	False	NA	NA	False	ATTAAA	-18	NA	63359910	63383372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
transcript_29125.known	chr14	-	1037	6	FSM	ENSMUSG00000035121.7	ENSMUST00000226002.2	1037	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.95959179422654	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCCAGGGTCTGAGAAAAG	7101	False	NA	NA	False	NA	NA	NA	63430974	63420084	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_63420184_63420869_63421014_63423486_63423684_63425889_63426231_63429153_63429308_63430872
transcript_29127.known	chr14	-	1932	5	FSM	ENSMUSG00000035121.7	ENSMUST00000038229.5	1932	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.04633819296811	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAAGGTGGTGTTTTGTTTG	7085	False	NA	-5	True	AATAAA	-33	NA	63430990	63419891	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_63421014_63423486_63423684_63425889_63426231_63429153_63429308_63430872
transcript_2915.known	chr1	-	1801	17	FSM	ENSMUSG00000026245.17	ENSMUST00000189529.7	1801	17	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_15	338.950378927359	969	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTGCGTAGCTGCATTA	NA	False	NA	-2	True	AATAAA	-19	NA	78465499	78401721	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456651_78458944_78459001_78465421
transcript_2916.known	chr1	-	1951	17	FSM	ENSMUSG00000026245.17	ENSMUST00000068333.14	1951	17	0	0	0	0	multi-exon	FALSE	canonical	3	979	junction_9	154.241693455434	1567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGCCAGCGTGTGGAACA	NA	False	NA	15	True	AATAAA	-36	NA	78465534	78401704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456749_78458944_78459001_78465421
transcript_29172.known	chr14	-	556	2	FSM	ENSMUSG00000021953.15	ENSMUST00000167685.2	556	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGCCTTTGAGGAGGATTAA	NA	False	NA	NA	False	NA	NA	NA	63746205	63741304	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_63741814_63746158
transcript_29173.known	chr14	-	2570	10	FSM	ENSMUSG00000035078.7	ENSMUST00000058679.7	2570	10	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_4	9.18936583472681	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAAGTGTGTGCCCTAGA	NA	False	NA	90	True	GATAAA	-16	NA	63781431	63760925	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_63761667_63764239_63764392_63765559_63765781_63767173_63767316_63767636_63767799_63771775_63771994_63774440_63774615_63777702_63777829_63779796_63779906_63780906
transcript_29175.nnic	chr14	+	1479	8	NNC	ENSMUSG00000021958.6	novel	1295	7	NA	NA	-88	-15	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_6	31.4324672910034	103	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATTCTTTTTTAAGTGCT	3999	False	NA	NA	False	AATAAA	-24	NA	64097724	64157289	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_64097897_64101664_64101775_64103551_64103645_64105967_64106047_64109750_64109844_64115560_64115638_64130171_64130283_64156545
transcript_29177.known	chr14	+	1295	7	FSM	ENSMUSG00000021958.6	ENSMUST00000022528.6	1295	7	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_4	11.9443152447793	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGAGCCTTTCACATGA	4087	False	NA	NA	False	AATAAA	-39	NA	64097812	64157304	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_64097897_64101664_64101775_64103551_64103645_64105967_64106047_64109750_64109844_64115560_64115638_64156545
transcript_29184.known	chr14	+	1064	5	FSM	ENSMUSG00000021966.8	ENSMUST00000022537.6	1064	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCCCTTCTCAGTGTATGA	NA	False	NA	NA	False	ATTAAA	-15	NA	64341734	64351204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_64341893_64346909_64347136_64348080_64348329_64349930_64350074_64350915
transcript_29186.known	chr14	-	1180	6	FSM	ENSMUSG00000054733.10	ENSMUST00000210428.2	1180	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	27.7748087302145	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAACCGCCTGCTGTGAGT	NA	False	NA	-5	True	AATAAA	-19	NA	64654397	64360074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_64360803_64447876_64447984_64471277_64471383_64522512_64522633_64551135_64551205_64654346
transcript_29187.nic	chr14	-	1468	6	ISM	ENSMUSG00000054733.10	ENSMUST00000067927.9	1860	11	14856	0	-130	0	3prime_fragment	FALSE	canonical	3	54	junction_3	9.47839648885823	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACCGCCTGCTGTGAGTC	NA	False	NA	-4	True	AATAAA	-20	NA	64678496	64360073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_64360803_64447876_64447984_64471277_64471383_64522512_64522633_64551135_64551205_64678158
transcript_29188.nic	chr14	-	799	6	ISM	ENSMUSG00000054733.10	ENSMUST00000067927.9	1860	11	14971	554	-15	-268	3prime_fragment	FALSE	canonical	3	54	junction_3	9.47839648885823	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAAGCTGTCCCTGAAGGTT	NA	False	NA	-2	True	ATTAAA	-17	NA	64678381	64360627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_64360803_64447876_64447984_64471277_64471383_64522512_64522633_64551135_64551205_64678158
transcript_29193.nnic	chr14	-	1007	3	NNC	ENSMUSG00000054733.10	novel	1860	11	NA	NA	204108	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	37	73	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACCGCCTGCTGTGAGTC	5672	False	NA	-4	True	AATAAA	-20	NA	64450289	64360073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_64360803_64447876_64447984_64450118
transcript_29199.nic	chr14	+	1754	16	ISM	ENSMUSG00000060012.10	ENSMUST00000100473.5	5603	40	-37	59974	-37	21562	5prime_fragment	FALSE	canonical	2	40	junction_3	12.3151216892982	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGCAGAGCGAGAGGACG	NA	False	NA	NA	False	AAAAAG	-6	NA	64889942	64983771	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_+_64890106_64907072_64907167_64945940_64945954_64951522_64951584_64952836_64952930_64954922_64955104_64959755_64959844_64962148_64962284_64964522_64964636_64965661_64965774_64973596_64973810_64974943_64975055_64975955_64976091_64979755_64979887_64982324_64982412_64983747
transcript_29207.known	chr14	-	3396	11	FSM	ENSMUSG00000021972.15	ENSMUST00000022544.14	3396	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	9.87167665596883	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCTGTCCGGGATTTCT	7685	False	NA	NA	False	AATAAA	-14	NA	65187299	65049048	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_65050869_65054465_65054586_65063049_65063145_65064220_65064317_65066034_65066118_65089333_65089488_65098964_65099076_65125023_65125110_65134098_65134576_65140687_65140768_65187025
transcript_29209.known	chr14	-	2958	10	FSM	ENSMUSG00000021972.15	ENSMUST00000176128.8	2958	10	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	16.1245154965971	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATACCAAACAGTGAACT	7664	False	NA	NA	False	GATAAA	-24	NA	65187320	65059666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_65061148_65063049_65063145_65064220_65064317_65066034_65066118_65089333_65089488_65098964_65099076_65125023_65125110_65134098_65134576_65140687_65140768_65187025
transcript_29210.known	chr14	-	1771	10	FSM	ENSMUSG00000021972.15	ENSMUST00000175744.8	1771	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	17.1276975887408	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTGGTGTGCTCTGCATT	7679	False	NA	NA	False	AATACA	-24	NA	65187305	65062507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_65062820_65063049_65063142_65064220_65064317_65066034_65066118_65089333_65089488_65098964_65099076_65125023_65125110_65134098_65134576_65140687_65140768_65187025
transcript_29211.known	chr14	+	2677	17	FSM	ENSMUSG00000021975.10	ENSMUST00000239450.2	2677	17	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_12	28.2795752266543	710	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGTTCTATTGCACTACA	NA	False	NA	20	True	AATAAA	-20	NA	65187493	65277284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_65187817_65217570_65217699_65223751_65223813_65227980_65228044_65230422_65230563_65232430_65232518_65244694_65244816_65245439_65245575_65253978_65254091_65257764_65257946_65263853_65263915_65266334_65266507_65269668_65269794_65271376_65271545_65273846_65273946_65274794_65274933_65276721
transcript_29218.nic	chr14	+	1117	2	ISM	ENSMUSG00000021975.10	ENSMUST00000224593.2	3476	8	-252	29880	5	-29880	5prime_fragment	FALSE	canonical	3	264	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGCCACATATAAGAAATGA	NA	False	NA	NA	False	NA	NA	NA	65187498	65218369	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_+_65187817_65217570
transcript_29219.nnic	chr14	+	631	4	Antisense	novelGene_ENSMUSG00000021978.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	4	junction_3	2.86744175568088	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAATCAGTTCCACGAGTC	NA	False	NA	NA	False	AGTAAA	-22	NA	65335581	65348462	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr14_+_65335830_65338153_65338226_65338376_65338499_65348273
transcript_29223.nnic	chr14	+	517	3	Antisense	novelGene_ENSMUSG00000021978.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_2	3	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCACGAGTCTGCAGGCT	NA	False	NA	NA	False	AGTAAA	-30	NA	65335581	65348470	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr14_+_65335830_65338153_65338226_65348273
transcript_29228.nnic	chr14	+	1222	4	NNC	ENSMUSG00000114693.2	novel	589	3	NA	NA	-41	4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	0.942809041582063	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTTGCAAGAGTAGAAACT	NA	False	NA	NA	False	ATTAAA	-20	NA	65409762	65422885	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_65409884_65412146_65412735_65413951_65414128_65422548
transcript_29229.known	chr14	+	589	3	FSM	ENSMUSG00000114693.2	ENSMUST00000223930.2	589	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAGCTTTGCAAGAGTAGA	NA	False	NA	NA	False	ATTAAA	-16	NA	65409803	65422881	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_65409884_65413951_65414128_65422548
transcript_29230.known	chr14	-	12734	7	FSM	ENSMUSG00000007989.8	ENSMUST00000131309.3	12734	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	9.80504405338848	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGTCTGTCATTAGCAT	NA	False	NA	-12	True	AATAAA	-16	NA	65499912	65429897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_65440382_65447140_65447375_65449523_65449673_65472362_65473381_65477166_65477364_65490392_65490913_65499780
transcript_29232.known	chr14	+	3781	8	FSM	ENSMUSG00000034532.10	ENSMUST00000224629.2	3781	8	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_5	3.88087934491604	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGTCTATTGTAGGTAT	2538	False	NA	NA	False	AATAAA	-13	NA	65504066	65561420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_65504233_65508148_65508285_65524580_65524617_65531232_65531440_65532841_65533007_65536634_65536865_65540548_65540652_65558682
transcript_29237.known	chr14	-	2851	15	FSM	ENSMUSG00000022031.7	ENSMUST00000022609.7	2851	15	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_14	46.0192949772602	742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCGTCGTGTGGTGCTTT	3444	False	NA	NA	False	AATAAA	-16	NA	65830524	65767897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_65769050_65784582_65784665_65785314_65785543_65786868_65786935_65788833_65788925_65797569_65797764_65800700_65800828_65802760_65802923_65815373_65815529_65818196_65818266_65819563_65819628_65820338_65820410_65823706_65823846_65827954_65828055_65830373
transcript_29238.known	chr14	-	2771	15	FSM	ENSMUSG00000022031.7	ENSMUST00000225355.2	2771	15	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_14	90.9467493893531	571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCGTCGTGTGGTGCTTT	3467	False	NA	NA	False	AATAAA	-16	NA	65830501	65767897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_65769050_65784582_65784665_65785314_65785543_65786868_65786935_65788833_65788925_65797569_65797764_65800700_65800828_65802760_65802923_65815373_65815529_65818196_65818266_65819563_65819628_65820338_65820410_65823706_65823846_65827954_65828055_65830430
transcript_29247.nnic	chr14	+	1238	8	NNC	ENSMUSG00000061356.14	novel	2745	19	NA	NA	19829	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	15.89121179284	73	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAACTGCTACATCATTA	6045	False	NA	NA	False	AATAAA	-35	NA	65862544	65885893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_65862710_65872451_65872617_65875999_65876158_65877431_65877571_65878687_65878797_65879306_65879444_65882458_65882550_65885619
transcript_29248.nnic	chr14	+	1146	8	NNC	ENSMUSG00000061356.14	novel	2745	19	NA	NA	20018	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	14.4094640101991	88	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAACTGCTACATCATTA	6234	False	NA	NA	False	AATAAA	-35	NA	65862733	65885893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_65862807_65872451_65872617_65875999_65876158_65877431_65877571_65878687_65878797_65879306_65879444_65882458_65882550_65885619
transcript_29249.nnic	chr14	+	1287	8	NNC	ENSMUSG00000061356.14	novel	2745	19	NA	NA	20069	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	13.2711133285641	72	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAACTGCTACATCATTA	6285	False	NA	NA	False	AATAAA	-35	NA	65862784	65885893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_65862999_65872451_65872617_65875999_65876158_65877431_65877571_65878687_65878797_65879306_65879444_65882458_65882550_65885619
transcript_29250.nnic	chr14	+	1201	8	NNC	ENSMUSG00000061356.14	novel	2745	19	NA	NA	21131	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	14.9952373391401	75	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAACTGCTACATCATTA	7347	False	NA	NA	False	AATAAA	-35	NA	65863846	65885893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_65863975_65872451_65872617_65875999_65876158_65877431_65877571_65878687_65878797_65879306_65879444_65882458_65882550_65885619
transcript_29251.nnic	chr14	+	1201	8	NNC	ENSMUSG00000061356.14	novel	2745	19	NA	NA	21160	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	15.2917211161425	79	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAACTGCTACATCATTA	7376	False	NA	NA	False	AATAAA	-35	NA	65863875	65885893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_65864004_65872451_65872617_65875999_65876158_65877431_65877571_65878687_65878797_65879306_65879444_65882458_65882550_65885619
transcript_29256.nnic	chr14	+	1093	8	NNC	ENSMUSG00000061356.14	novel	2745	19	NA	NA	25157	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	15.89121179284	80	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAACTGCTACATCATTA	NA	False	NA	NA	False	AATAAA	-35	NA	65867872	65885893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_65867893_65872451_65872617_65875999_65876158_65877431_65877571_65878687_65878797_65879306_65879444_65882458_65882550_65885619
transcript_2926.known	chr1	+	1178	6	FSM	ENSMUSG00000012187.14	ENSMUST00000012331.7	1178	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTTGTTTTTGTTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	78488503	78514810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_78488693_78499321_78499501_78500210_78500416_78504206_78504382_78505689_78505890_78514580
transcript_29268.known	chr14	+	3794	9	FSM	ENSMUSG00000022032.15	ENSMUST00000022610.15	3794	9	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	7.61474720525902	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGCTGATAAGTGGTCCA	818	False	NA	NA	False	AATAAA	-19	NA	65903851	66002275	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_65904196_65908005_65908124_65927216_65927346_65967969_65968645_65975872_65975954_65977738_65977838_65979580_65979629_65997033_65997229_66000170
transcript_2927.known	chr1	+	3950	16	FSM	ENSMUSG00000032883.16	ENSMUST00000035779.15	3950	16	0	0	0	0	multi-exon	TRUE	canonical	3	149	junction_2	98.3136477470617	433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTCTTCAGAGTCTTGT	NA	False	NA	7	True	AATAAA	-19	NA	78635541	78685460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_78635821_78640857_78640998_78659309_78659728_78665953_78666132_78667985_78668096_78669798_78669938_78671912_78672064_78673797_78673922_78674145_78674218_78674606_78674747_78676712_78676886_78677472_78677548_78678985_78679178_78681202_78681318_78682950_78683109_78683974
transcript_29274.known	chr14	+	1720	8	FSM	ENSMUSG00000022033.10	ENSMUST00000022612.10	1720	8	0	0	0	0	multi-exon	FALSE	canonical	3	729	junction_5	59.6342594316319	3253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGCATTATCTGTTTTT	NA	False	NA	25	True	AATAAA	-41	NA	66043285	66055271	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_66043584_66046663_66046739_66049379_66049474_66050414_66050558_66051255_66051426_66052620_66052751_66054048_66054226_66054638
transcript_29276.nic	chr14	+	1540	8	NIC	ENSMUSG00000022033.10	novel	451	5	NA	NA	-47	0	combination_of_known_junctions	FALSE	canonical	3	110	junction_1	250.309767272148	476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGCATTATCTGTTTTT	NA	False	NA	25	True	AATAAA	-41	NA	66043633	66055271	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_+_66043752_66046663_66046739_66049379_66049474_66050414_66050558_66051255_66051426_66052620_66052751_66054048_66054226_66054638
transcript_2928.known	chr1	+	2976	15	FSM	ENSMUSG00000032883.16	ENSMUST00000142704.8	2976	15	0	0	0	0	multi-exon	FALSE	canonical	3	358	junction_1	36.8929090028677	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTTTTAAGAAATTTCGAA	NA	False	NA	3	True	AATAAA	-14	NA	78635599	78684684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_78635821_78659309_78659728_78665953_78666132_78667985_78668096_78669798_78669938_78671912_78672064_78673797_78673922_78674145_78674218_78674606_78674747_78676712_78676886_78677472_78677548_78678985_78679178_78681202_78681318_78682950_78683109_78683974
transcript_29280.known	chr14	+	451	5	FSM	ENSMUSG00000022033.10	ENSMUST00000139644.2	451	5	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	327.4396891032	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCTGAATGACTTAATAGA	NA	False	NA	NA	False	NA	NA	NA	66043680	66051323	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_66043752_66046663_66046739_66049379_66049474_66050414_66050558_66051255
transcript_29281.known	chr14	-	2913	11	FSM	ENSMUSG00000022034.11	ENSMUST00000022613.10	2913	11	0	0	0	0	multi-exon	FALSE	canonical	3	933	junction_8	61.5078043828586	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATTGTTCAGTGGCTTG	6344	False	NA	-11	True	ATTAAA	-14	NA	66071443	66056486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_66057548_66059029_66059191_66061566_66061708_66062294_66062385_66063928_66064061_66064616_66064738_66065917_66065973_66067110_66067202_66068453_66069244_66070112_66070191_66071250
transcript_29282.known	chr14	-	326	3	FSM	ENSMUSG00000022034.11	ENSMUST00000225853.2	326	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	560.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAATAAAAAAAAACAGAAGA	6430	False	NA	NA	False	NA	NA	NA	66071357	66068874	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_66069016_66070112_66070191_66071250
transcript_29286.known	chr14	+	2230	9	FSM	ENSMUSG00000022035.7	ENSMUST00000022614.7	2230	9	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_2	11.4229757506527	964	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCATTGATATCTGAATTC	NA	False	NA	31	True	AATAAA	-20	NA	66074750	66104056	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_66074934_66077896_66077945_66083744_66083785_66089065_66089118_66091550_66091627_66093872_66093977_66094142_66094346_66097618_66097665_66102578
transcript_29298.known	chr14	+	3555	8	FSM	ENSMUSG00000022035.7	ENSMUST00000225823.2	3555	8	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_2	11.9369089767145	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAAGACTGGCTTACTCA	NA	False	NA	NA	False	NA	NA	NA	66074805	66103003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_66074934_66077896_66077945_66083744_66083785_66089065_66091627_66093872_66093977_66094142_66094346_66097618_66097665_66102578
transcript_29300.known	chr14	+	1810	9	FSM	ENSMUSG00000022037.16	ENSMUST00000022616.14	1810	9	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_1	2.72717802865893	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTTGGGTCTGTTTTTTA	NA	False	NA	13	True	AATAAA	-20	NA	66205931	66218996	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_66206138_66209180_66209302_66210773_66210923_66212291_66212463_66213029_66213442_66214354_66214460_66217099_66217330_66218302_66218479_66218756
transcript_29301.known	chr14	-	2263	12	FSM	ENSMUSG00000034450.9	ENSMUST00000059970.9	2263	12	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	1.97086212624353	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTTGCCCTTGAGGAAT	NA	False	NA	NA	False	ATTAAA	-16	NA	66246656	66224234	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_66225144_66225630_66225722_66227827_66227993_66228478_66228629_66234272_66234350_66235008_66235117_66237282_66237469_66240039_66240131_66241530_66241626_66243285_66243412_66245487_66245590_66246493
transcript_29305.known	chr14	-	2035	19	FSM	ENSMUSG00000022040.9	ENSMUST00000070515.2	2035	19	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_15	18.7001188350354	253	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGTTTCTTGTGTTCTTG	NA	False	NA	-5	True	AATAAA	-16	NA	66361949	66321825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_66322210_66322379_66322439_66322744_66322826_66323682_66323753_66324413_66324517_66325748_66325783_66326954_66327030_66330247_66330360_66332186_66332273_66333134_66333162_66336252_66336288_66339041_66339121_66339595_66339692_66341174_66341244_66344662_66344786_66345425_66345617_66347564_66347725_66354159_66354245_66361783
transcript_29306.known	chr14	+	3678	6	FSM	ENSMUSG00000022043.20	ENSMUST00000022623.13	3678	6	0	0	0	0	multi-exon	FALSE	canonical	3	340	junction_4	10.4957134107215	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTTGTTTTTTATTGTC	NA	False	NA	31	True	NA	NA	NA	66534479	66548873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_66534999_66540629_66540726_66541453_66541685_66544474_66544498_66545260_66545380_66546183
transcript_29307.known	chr14	-	759	4	FSM	ENSMUSG00000085984.8	ENSMUST00000145637.8	759	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	5.65685424949238	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGAAAAGGCAAGGCCTTA	NA	False	NA	NA	False	TTTAAA	-39	NA	66534389	66532783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_66533036_66533403_66533594_66533941_66534127_66534257
transcript_29308.nnic	chr14	-	622	3	NNC	ENSMUSG00000085984.8	novel	764	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAAGGCAAGGCCTTAC	NA	False	NA	NA	False	TTTAAA	-40	NA	66534389	66532782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_66533036_66533403_66533594_66534210
transcript_29309.known	chr14	-	764	3	FSM	ENSMUSG00000085984.8	ENSMUST00000153646.8	764	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	2	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAAGGCAAGGCCTTAC	NA	False	NA	NA	False	TTTAAA	-40	NA	66534578	66532782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_66533036_66533403_66533594_66534257
transcript_29310.known	chr14	+	1057	1	FSM	ENSMUSG00000022043.20	ENSMUST00000223737.2	1057	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	197	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAAAG	-16	NA	66534514	66535571	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_66534500_66535600
transcript_29311.known	chr14	+	1296	5	FSM	ENSMUSG00000022043.20	ENSMUST00000121006.2	1296	5	0	0	0	0	multi-exon	FALSE	canonical	3	340	junction_4	9.12414379544733	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAAATTTGTTCCCATAT	NA	False	NA	NA	False	NA	NA	NA	66534538	66545746	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_66534999_66540629_66540726_66541453_66541685_66544474_66544498_66545260
transcript_29312.nnic	chr14	+	2238	4	NNC	ENSMUSG00000046204.15	novel	5518	3	NA	NA	-10	-1259	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	11.7756811551038	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGAACTTTAGTTTCCT	NA	False	NA	NA	False	AATACA	-24	NA	67148608	67155005	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_67148743_67151755_67151933_67152770_67152900_67153207
transcript_29313.known	chr14	+	5518	3	FSM	ENSMUSG00000046204.15	ENSMUST00000089236.11	5518	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	6.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTCTGCCCAAGACAGTT	NA	False	NA	NA	False	AATAAA	-15	NA	67148618	67158472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_67148743_67152770_67152900_67153207
transcript_29320.known	chr14	-	3238	6	FSM	ENSMUSG00000022051.16	ENSMUST00000022634.9	3238	6	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_1	44.8508639827596	1204	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTCCATATATCATTTT	NA	False	NA	-12	True	ATTAAA	-16	NA	67246326	67222687	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_67225225_67226583_67226734_67226854_67226959_67231325_67231399_67236969_67237154_67246136
transcript_29322.known	chr14	-	2192	11	FSM	ENSMUSG00000022052.10	ENSMUST00000225251.2	2192	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	291.951776839943	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGAATCTGGTTTTCTTT	NA	False	NA	-5	True	AATAAA	-13	NA	67309631	67253122	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_67254103_67257164_67257257_67259722_67259893_67260474_67260640_67261081_67261260_67261976_67262090_67266313_67266480_67276323_67276422_67299885_67299948_67307683_67307759_67309538
transcript_29324.known	chr14	-	4010	10	FSM	ENSMUSG00000022052.10	ENSMUST00000089230.7	4010	10	0	0	0	0	multi-exon	FALSE	canonical	3	602	junction_4	68.1900032498157	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATAGACTTCATAATAACT	NA	False	NA	NA	False	AATAAA	-22	NA	67309893	67251504	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_67254103_67257164_67257257_67259722_67259893_67260474_67260640_67261081_67261260_67261976_67262090_67266313_67266480_67276323_67276422_67307683_67307759_67309538
transcript_29328.known	chr14	-	1988	10	FSM	ENSMUSG00000022052.10	ENSMUST00000225380.2	1988	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	231.298641864571	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATTTGAATTTGTATTTA	NA	False	NA	-8	True	AATAAA	-21	NA	67309884	67252122	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_67252708_67257164_67257257_67259722_67259893_67260474_67260640_67261081_67261260_67261976_67262090_67266313_67266480_67276323_67276422_67307683_67307759_67309538
transcript_29329.nnic	chr14	+	494	3	Intergenic	novelGene_39	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	0.5	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTATCCTTAGATAATAC	NA	False	NA	NA	False	AATAAA	-30	NA	67421773	67433932	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr14_+_67421894_67422521_67422651_67433687
transcript_29330.known	chr14	-	3841	15	FSM	ENSMUSG00000048922.19	ENSMUST00000163100.8	3841	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	110.056131318597	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTTCCAGATTGTTCAAA	NA	False	NA	-34	True	ATTAAA	-16	NA	67953059	67913803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_67915472_67917610_67917780_67931074_67931204_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952672
transcript_29335.known	chr14	-	2034	14	FSM	ENSMUSG00000048922.19	ENSMUST00000132705.8	2034	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	101.200837286337	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGGAAAAAAGATGTTGAAAA	NA	False	NA	NA	False	AATACA	-42	NA	67953059	67917749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_67917780_67931074_67931204_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952672
transcript_29337.nic	chr14	-	1821	13	ISM	ENSMUSG00000048922.19	ENSMUST00000132705.8	2034	14	184	13324	-51	508	5prime_fragment	FALSE	canonical	3	294	junction_1	37.2449661028172	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGAATGCTTTTCACATTT	NA	False	NA	NA	False	AAAAAG	-35	NA	67952875	67931073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_67931204_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952672
transcript_2934.known	chr1	+	7393	3	FSM	ENSMUSG00000079470.9	ENSMUST00000053760.12	7393	3	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_2	87	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGCTTCATTCTTGTGC	NA	False	NA	12	True	AATAAA	-22	NA	78635754	78649229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_78635821_78640857_78640998_78642042
transcript_29344.known	chr14	+	1302	12	FSM	ENSMUSG00000034327.18	ENSMUST00000150768.8	1302	12	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_9	22.4881970879051	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATCCATCCATCGAGTTG	NA	False	NA	NA	False	NA	NA	NA	67953710	67977918	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_67953834_67962006_67962129_67963775_67963820_67966098_67966196_67966799_67966859_67967053_67967183_67970609_67970678_67970795_67970892_67971589_67971740_67975054_67975161_67975825_67975960_67977744
transcript_29346.known	chr14	+	3157	11	FSM	ENSMUSG00000034327.18	ENSMUST00000078053.13	3157	11	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_8	27.0325729445053	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTGTGGTTTCCTGACTGT	NA	False	NA	NA	False	ATTAAA	-16	NA	67953546	67979759	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_67953834_67962006_67962129_67963775_67963820_67966098_67966196_67966799_67966859_67967053_67967183_67970609_67970678_67970795_67970892_67975054_67975161_67975825_67975960_67977744
transcript_29349.nnic	chr14	-	481	3	NNC	ENSMUSG00000044447.6	novel	9988	52	NA	NA	39405	-62584	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	1.5	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCAGAGAGAATGCCTAGG	NA	False	NA	NA	False	AATAAA	-28	NA	68131476	68115602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_68115746_68118647_68118732_68131222
transcript_29350.known	chr14	-	640	3	FSM	ENSMUSG00000114621.2	ENSMUST00000223853.2	640	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	0.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTCTTTCTGCTTTTCTT	NA	False	NA	NA	False	AATAAA	-45	NA	68288779	68281876	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_68282134_68282294_68282454_68288555
transcript_29351.nnic	chr14	-	522	3	NNC	ENSMUSG00000114621.2	novel	640	3	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTCTTTCTGCTTTTCTT	NA	False	NA	NA	False	AATAAA	-45	NA	68288781	68281876	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_68282134_68282294_68282454_68288675
transcript_29352.nic	chr14	-	1440	2	NIC	ENSMUSG00000114621.2	novel	640	3	NA	NA	0	639	intron_retention	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGAAGAGGATTAAGTTTC	NA	False	NA	NA	False	AAGAAA	-11	NA	68288779	68281237	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_-_68282454_68288555
transcript_29353.known	chr14	+	3380	4	FSM	ENSMUSG00000022055.8	ENSMUST00000022639.8	3380	4	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_3	13.589211407093	269	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTGTGCAGTCTTTTTTT	NA	False	NA	12	True	AATAAA	-26	NA	68321311	68326544	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_68322459_68323422_68323548_68323935_68324256_68324756
transcript_29357.known	chr14	-	4174	4	FSM	ENSMUSG00000034248.8	ENSMUST00000037064.5	4174	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	79.79974937304	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTGGGGTCTTTGTGG	542	False	NA	-4	True	AATAAA	-16	NA	69522561	69479296	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_69482804_69485029_69485087_69486842_69487072_69522180
transcript_29359.nnic	chr14	+	2994	13	NNC	ENSMUSG00000095463.9	novel	3589	13	NA	NA	-13	470	at_least_one_novel_splicesite	FALSE	canonical	3	116	junction_8	28.7096334974091	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGACTTGACATTTTAAACA	7288	False	NA	NA	False	AATAAA	-16	NA	69574609	69604135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_69574738_69584934_69585044_69586521_69586720_69588151_69588358_69591850_69592002_69592842_69592947_69594161_69594222_69594443_69594575_69596270_69596438_69599087_69599413_69601016_69601103_69601771_69601934_69602968
transcript_29360.known	chr14	+	989	4	FSM	ENSMUSG00000095463.9	ENSMUST00000184314.8	989	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	92.0144916122817	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTGGAAGTGCCTGAGAG	7325	False	NA	NA	False	TTTAAA	-6	NA	69574646	69587782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_69574738_69584934_69585044_69586521_69586720_69587191
transcript_29362.known	chr14	+	3589	13	FSM	ENSMUSG00000022066.17	ENSMUST00000185072.8	3589	13	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_8	35.9663229826026	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTGACGTCTTTCCCTTG	NA	False	NA	NA	False	NA	NA	NA	69792872	69822969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_69792988_69803184_69803294_69804771_69804970_69806401_69806608_69810100_69810252_69811092_69811197_69812411_69812472_69812693_69812849_69814520_69814688_69817337_69817663_69819266_69819353_69820021_69820184_69821218
transcript_29363.known	chr14	+	989	4	FSM	ENSMUSG00000022066.17	ENSMUST00000064846.8	989	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	92.2689306080631	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTGGAAGTGCCTGAGAG	NA	False	NA	NA	False	TTTAAA	-6	NA	69792896	69806032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_69792988_69803184_69803294_69804771_69804970_69805441
transcript_29367.known	chr14	-	1726	8	FSM	ENSMUSG00000034194.19	ENSMUST00000118374.8	1726	8	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_7	41.9007573844168	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTGATTGCGTCCAAGTG	NA	False	NA	-6	True	AATAAA	-15	NA	69945033	69934755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_69935052_69936032_69936129_69937408_69937480_69941402_69941576_69942582_69943328_69943995_69944134_69944502_69944631_69944954
transcript_29370.known	chr14	-	1958	7	FSM	ENSMUSG00000034194.19	ENSMUST00000121142.4	1958	7	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_3	17.7333646616265	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTGATTGCGTCCAAGT	NA	False	NA	-7	True	AATAAA	-14	NA	69944942	69934756	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_69935052_69936032_69936129_69937408_69937480_69941402_69941576_69942582_69943328_69943995_69944134_69944502
transcript_29371.known	chr14	-	2649	10	FSM	ENSMUSG00000034190.10	ENSMUST00000036381.10	2649	10	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_7	17.0583602471336	169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGTTGTTGTCTATTC	NA	False	NA	-2	True	ATTAAA	-15	NA	69969983	69954448	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_69955750_69955963_69956147_69956577_69956639_69956847_69956947_69957196_69957317_69957560_69957610_69958376_69958511_69958655_69958842_69967571_69967744_69969639
transcript_29378.known	chr14	+	3179	8	FSM	ENSMUSG00000022074.7	ENSMUST00000022663.7	3179	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	19.7556501863572	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCAGTGTACGTGGCCCTC	NA	False	NA	4	True	NA	NA	NA	70004920	70021860	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_70005241_70008229_70008327_70010825_70010937_70012534_70012644_70013520_70013718_70015169_70015265_70017952_70018023_70019680
transcript_29381.known	chr14	+	2787	6	FSM	ENSMUSG00000022074.7	ENSMUST00000224533.2	2787	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	22.5831795812724	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATTAAAAAAAAAACAACTT	NA	False	NA	NA	False	NA	NA	NA	70004933	70017135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_70005241_70008229_70008327_70010825_70010937_70012534_70012644_70013520_70013718_70015169
transcript_29382.known	chr14	-	3725	21	FSM	ENSMUSG00000033712.7	ENSMUST00000035612.7	3725	21	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_8	38.4373191052654	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGTGAGTCTTTGTAG	NA	False	NA	44	True	AATAAA	-18	NA	70391260	70375616	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_70376397_70376618_70376825_70376940_70377130_70377208_70377321_70377435_70377583_70377913_70377997_70378316_70378462_70379059_70379297_70379391_70379620_70379808_70379981_70380373_70380538_70380847_70380962_70381036_70381260_70383291_70383412_70388460_70388558_70388722_70388853_70389009_70389125_70389328_70389421_70389821_70389914_70390112_70390207_70391075
transcript_29385.known	chr14	+	1767	9	FSM	ENSMUSG00000022089.10	ENSMUST00000022680.9	1767	9	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_3	8.98523093748847	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAACCA	NA	False	NA	NA	False	NA	NA	NA	70337553	70375655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_70337646_70356052_70356102_70361289_70361331_70361631_70361694_70366298_70366436_70366966_70367008_70371898_70372041_70372184_70372320_70374587
transcript_29389.nic	chr14	+	955	8	ISM	ENSMUSG00000022089.10	ENSMUST00000022680.9	1767	9	-23	3103	-23	577	5prime_fragment	FALSE	canonical	3	54	junction_3	8.9511143987546	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTAACTCTTCGCCCCTT	NA	False	NA	NA	False	NA	NA	NA	70337530	70372552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_+_70337646_70356052_70356102_70361289_70361331_70361631_70361694_70366298_70366436_70366966_70367008_70371898_70372041_70372184
transcript_29392.known	chr14	-	1983	7	FSM	ENSMUSG00000044551.14	ENSMUST00000153871.2	1983	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	2.91070819942883	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGACTGTTAAATGACC	NA	False	NA	NA	False	NA	NA	NA	70396951	70391853	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_70392726_70393298_70393403_70393609_70393726_70393864_70393968_70394107_70394249_70394627_70395104_70396780
transcript_29398.nic	chr14	-	2031	10	ISM	ENSMUSG00000022091.7	ENSMUST00000227259.2	2481	21	12272	-464	12272	0	3prime_fragment	FALSE	canonical	3	14	junction_5	4.24554959434284	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTGTCTGCTTCATTA	NA	False	NA	NA	False	AATAAA	-16	NA	70429800	70417916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_70418681_70421114_70421222_70421455_70421557_70422276_70422586_70424307_70424434_70428176_70428292_70428464_70428512_70428596_70428650_70428881_70429025_70429534
transcript_29404.known	chr14	-	102	1	FSM	ENSMUSG00000077577.4	ENSMUST00000104389.4	102	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGGAAGCTGGTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	70666046	70665944	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_70665900_70666000
transcript_29405.known	chr14	-	2016	9	FSM	ENSMUSG00000000776.14	ENSMUST00000000793.13	2016	9	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_3	16.2244992218558	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGTAAGTGGTTCTGCT	1731	False	NA	-7	True	AATAAA	-17	NA	70680887	70676196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_70677019_70677157_70677311_70677453_70677720_70678038_70678208_70678476_70678602_70678743_70678896_70679791_70679836_70680390_70680561_70680772
transcript_29407.known	chr14	-	2032	8	FSM	ENSMUSG00000000776.14	ENSMUST00000180358.3	2032	8	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_3	15.9910689359494	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGAGTCTATTTCCAAAT	1888	False	NA	-10	True	AATAAA	-17	NA	70680730	70676235	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_70677019_70677157_70677311_70677453_70677720_70678038_70678208_70678476_70678602_70678743_70678896_70679791_70679836_70680390
transcript_29410.nic	chr14	-	694	5	ISM	ENSMUSG00000000776.14	ENSMUST00000000793.13	2016	9	-124	2316	-124	0	5prime_fragment	FALSE	canonical	3	150	junction_4	8.90224690738243	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAGCAGATCCTGCGCAT	1607	False	NA	NA	False	AAAAAG	-24	NA	70681011	70678512	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_70678602_70678743_70678896_70679791_70679836_70680390_70680561_70680772
transcript_29414.known	chr14	+	2838	5	FSM	ENSMUSG00000003469.10	ENSMUST00000003561.10	2838	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2.17944947177034	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTGGTCCATTTAGGCG	NA	False	NA	13	True	AATAAA	-25	NA	70694915	70706272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_70695244_70699178_70699364_70700679_70700855_70702889_70703008_70704240
transcript_29415.known	chr14	+	1001	5	FSM	ENSMUSG00000033595.8	ENSMUST00000226548.2	1001	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCTGCAGCCATTTGCTA	NA	False	NA	NA	False	ATTAAA	-11	NA	70768309	70771168	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_70768711_70769507_70769580_70770214_70770287_70770616_70770689_70770784
transcript_29419.known	chr14	+	1565	8	FSM	ENSMUSG00000033589.5	ENSMUST00000047218.5	1565	8	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_3	37.0515360886781	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGTCTCTTCACATCTC	6567	False	NA	30	True	AATAAA	-26	NA	70782793	70786373	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_70783179_70783916_70783990_70784369_70784447_70784554_70784676_70785106_70785221_70785379_70785516_70785624_70785780_70785869
transcript_29420.known	chr14	+	1444	7	FSM	ENSMUSG00000033589.5	ENSMUST00000226563.2	1444	7	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_2	32.9313258497471	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCGTGGTACCCTGCACAG	6464	False	NA	NA	False	NA	NA	NA	70782690	70786041	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_70783179_70783916_70783990_70784369_70784676_70785106_70785221_70785379_70785516_70785624_70785780_70785869
transcript_29423.nnic	chr14	-	511	2	Antisense	novelGene_ENSMUSG00000022096.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTTTTGATTGGGGGTC	NA	False	NA	NA	False	NA	NA	NA	70800878	70799035	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr14_-_70799393_70800724
transcript_29425.known	chr14	+	3926	3	FSM	ENSMUSG00000045211.6	ENSMUST00000089049.4	3926	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	3	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTACACACCTGTAACTCCA	NA	False	NA	NA	False	AAAACA	-25	NA	70815076	70820011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_70815551_70816351_70816566_70816773
transcript_29429.known	chr14	-	5418	16	FSM	ENSMUSG00000022099.18	ENSMUST00000022694.17	5418	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	61.6256079528272	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCTGTTTCCTTTTCCTT	NA	False	NA	NA	False	ATTAAA	-17	NA	70864748	70838702	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_70842295_70842407_70842489_70842736_70842803_70842980_70842989_70843132_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855394_70855470_70855678_70855849_70864178
transcript_29433.known	chr14	-	4176	15	FSM	ENSMUSG00000022099.18	ENSMUST00000110984.4	4176	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	58.3538205034335	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATCCTTGAAACAGACCT	NA	False	NA	NA	False	AGTAAA	-20	NA	70864494	70839624	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_70842295_70842407_70842489_70842980_70842989_70843132_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855394_70855470_70855678_70855849_70864178
transcript_29444.nnic	chr14	-	1467	6	NNC	ENSMUSG00000022101.7	novel	1689	5	NA	NA	-129	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	16.6541286172528	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGGTCCGCTGAAGAAAGG	NA	False	NA	0	True	AATAAA	-16	NA	70879837	70873642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_70874464_70875906_70876014_70876241_70876387_70878971_70879009_70879162_70879267_70879584
transcript_29447.nnic	chr14	-	1382	6	NNC	ENSMUSG00000022101.7	novel	1689	5	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	18.6826122370508	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGGTCCGCTGAAGAAAGG	NA	False	NA	0	True	AATAAA	-16	NA	70879719	70873642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_70874464_70875906_70876014_70876241_70876420_70878971_70879009_70879162_70879267_70879584
transcript_29448.known	chr14	-	1336	5	FSM	ENSMUSG00000022101.7	ENSMUST00000227123.2	1336	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	9.90896059130321	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCCCGGCAGAAGAAATAGG	NA	False	NA	NA	False	NA	NA	NA	70879694	70873948	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_70874464_70875906_70876014_70876241_70876387_70878971_70879009_70879162
transcript_29449.known	chr14	-	1689	5	FSM	ENSMUSG00000022101.7	ENSMUST00000022697.7	1689	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	15.3195136998535	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGGTCCGCTGAAGAAAGG	NA	False	NA	0	True	AATAAA	-16	NA	70879708	70873642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_70874464_70875906_70876014_70876241_70876420_70878971_70879009_70879162
transcript_29457.nic	chr14	-	1098	4	ISM	ENSMUSG00000022101.7	ENSMUST00000227123.2	1336	5	-58	1739	-44	-1739	5prime_fragment	FALSE	canonical	3	35	junction_2	11.4309521329882	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTATATGAGTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	70879752	70875687	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_70876014_70876241_70876387_70878971_70879009_70879162
transcript_29458.nic	chr14	-	1136	4	ISM	ENSMUSG00000022101.7	ENSMUST00000022697.7	1689	5	-49	2045	-49	-1739	5prime_fragment	FALSE	canonical	3	21	junction_2	17.4610678049451	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTATATGAGTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	70879757	70875687	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_70876014_70876241_70876420_70878971_70879009_70879162
transcript_2946.known	chr1	+	1424	4	FSM	ENSMUSG00000026248.10	ENSMUST00000027464.9	1424	4	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_2	2.44948974278318	746	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCTTTCCTTTCTTTAT	NA	False	NA	13	True	AATAAA	-15	NA	79753734	79759162	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_79754029_79755574_79756044_79757204_79757384_79758680
transcript_29460.known	chr14	-	4472	28	FSM	ENSMUSG00000022100.15	ENSMUST00000022696.8	4472	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	88.8509332544799	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAACATTGGATGGAGAAA	NA	False	NA	NA	False	AATAAA	-37	NA	71003994	70902257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_70903535_70904461_70904590_70906099_70906199_70906756_70906918_70907990_70908130_70908491_70908707_70909088_70909172_70914146_70914255_70915518_70915608_70918678_70918786_70919772_70919882_70920232_70920297_70921095_70921177_70922299_70922374_70922861_70922998_70925067_70925174_70925566_70925761_70928421_70928595_70930090_70930238_70931356_70931477_70933053_70933128_70933990_70934157_70936381_70936487_70939159_70939226_70940662_70940830_70942103_70942198_70944726_70944874_71003951
transcript_29464.known	chr14	-	997	9	FSM	ENSMUSG00000047911.7	ENSMUST00000062629.5	997	9	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_7	2.75850956133924	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCTCCCTCTGCCTCCCCC	NA	False	NA	NA	False	AATAAA	-15	NA	70890524	70884741	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_70884990_70885076_70885111_70885484_70885526_70885699_70885852_70886910_70887005_70889562_70889677_70889768_70889855_70889971_70890136_70890460
transcript_29466.nic	chr14	+	1740	5	NIC	ENSMUSG00000022102.14	novel	404	3	NA	NA	-58	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	2.38484800354236	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTGTGGCCTGTAATGC	NA	False	NA	NA	False	ATTAAA	-16	NA	71010653	71015935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_+_71010805_71012905_71013188_71013423_71013512_71014255_71014438_71014898
transcript_29467.known	chr14	+	1795	5	FSM	ENSMUSG00000022102.14	ENSMUST00000022698.8	1795	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.03108891324554	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTGTGGCCTGTAATGC	NA	False	NA	NA	False	ATTAAA	-16	NA	71011743	71015935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_71011950_71012905_71013188_71013423_71013512_71014255_71014438_71014898
transcript_29468.known	chr14	-	4100	24	FSM	ENSMUSG00000033487.15	ENSMUST00000162825.8	4100	24	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_23	34.1903931941048	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACACACACACACTTACACA	7145	False	NA	NA	False	AAAAAG	-33	NA	72840402	72776969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_72777922_72789911_72790040_72790821_72790989_72793586_72793800_72793897_72794182_72794278_72794429_72795073_72795188_72796419_72796596_72796681_72796788_72799037_72799157_72800923_72800993_72802045_72802185_72803536_72803624_72804749_72804925_72806281_72806407_72808874_72808929_72810729_72810869_72811791_72811852_72811962_72812121_72820396_72820456_72822014_72822285_72827193_72827432_72836505_72836583_72840361
transcript_2947.known	chr1	+	885	2	FSM	ENSMUSG00000026248.10	ENSMUST00000189176.2	885	2	0	0	0	0	multi-exon	FALSE	canonical	3	318	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTGGAGGTTTACGTTA	NA	False	NA	NA	False	AATAAA	-13	NA	79753832	79756263	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_79754029_79755574
transcript_29471.known	chr14	-	1262	4	FSM	ENSMUSG00000033487.15	ENSMUST00000162922.8	1262	4	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_3	15.5134350376268	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	72947437	72835814	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_72836583_72889455_72889532_72921073_72921212_72947157
transcript_29474.known	chr14	-	6143	26	FSM	ENSMUSG00000033487.15	ENSMUST00000089017.12	6143	26	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_25	24.1979833870511	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTTTTTTGTATTTATAA	NA	False	NA	-1	True	AATAAA	-24	NA	72947443	72775385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_72777922_72789911_72790040_72790821_72790989_72793586_72793800_72793897_72794182_72794278_72794429_72795073_72795188_72796419_72796596_72796681_72796788_72799037_72799157_72800923_72800993_72802045_72802185_72803536_72803624_72804749_72804925_72806281_72806407_72808874_72808929_72810729_72810869_72811791_72811852_72811962_72812121_72820396_72820456_72822014_72822285_72827193_72827432_72836505_72836583_72889455_72889532_72921073_72921212_72947157
transcript_29479.nnic	chr14	+	1121	3	NNC	ENSMUSG00000115532.2	novel	1537	6	NA	NA	57965	-4190	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACTCTGTTTGTTAGGGT	NA	False	NA	NA	False	AATAAA	-10	NA	73084757	73093518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_73085021_73090947_73091124_73092836
transcript_2948.known	chr1	-	4551	12	FSM	ENSMUSG00000073643.12	ENSMUST00000113512.8	4551	12	0	0	0	0	multi-exon	FALSE	canonical	3	564	junction_7	59.0382982576312	579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTAATTTTGTTTGCT	NA	False	NA	0	True	AATAAA	-23	NA	79739486	79679978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_79683288_79683960_79684070_79685168_79685300_79686809_79686912_79691574_79691681_79692590_79692718_79702361_79702475_79704282_79704434_79707372_79707428_79711516_79711591_79717778_79717847_79739280
transcript_29481.nnic	chr14	-	302	2	NIC	ENSMUSG00000033470.13	novel	737	8	NA	NA	-4322	-8	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTAAATCAACTTTGTGT	NA	False	NA	NA	False	AATAAA	-18	NA	73267921	73263050	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_-_73263280_73267848
transcript_29482.known	chr14	+	3622	16	FSM	ENSMUSG00000022106.15	ENSMUST00000169513.8	3622	16	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	12.7774106227444	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATTAATTTTATTGCCT	NA	False	NA	NA	False	TATAAA	-23	NA	73380538	73421658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_73380629_73388972_73389056_73391754_73391849_73392270_73392335_73395827_73395886_73399379_73399536_73399766_73399918_73402123_73402291_73403919_73404079_73404204_73404313_73405429_73405573_73411162_73411354_73411829_73411957_73414434_73414575_73415872_73416004_73419898
transcript_29484.known	chr14	+	3531	15	FSM	ENSMUSG00000022106.15	ENSMUST00000164822.8	3531	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	11.0686632491213	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATTAATTTTATTGCCT	9687	False	NA	NA	False	TATAAA	-23	NA	73379976	73421658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_73380034_73388972_73389056_73391754_73391849_73392270_73392335_73399379_73399536_73399766_73399918_73402123_73402291_73403919_73404079_73404204_73404313_73405429_73405573_73411162_73411354_73411829_73411957_73414434_73414575_73415872_73416004_73419898
transcript_29485.known	chr14	+	2971	15	FSM	ENSMUSG00000022106.15	ENSMUST00000022702.13	2971	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	11.5740737717309	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCTGGAATCCTATGCCT	NA	False	NA	NA	False	AATAAA	-19	NA	73380601	73421133	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_73380629_73388972_73389056_73391759_73391849_73392270_73392335_73399379_73399536_73399766_73399918_73402123_73402291_73403919_73404079_73404204_73404313_73405429_73405573_73411162_73411354_73411829_73411957_73414434_73414575_73415872_73416004_73419898
transcript_2949.known	chr1	-	717	5	FSM	ENSMUSG00000073643.12	ENSMUST00000048820.14	717	5	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_1	81.1984451821585	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTTAATTATTTTTATACA	NA	False	NA	NA	False	CATAAA	-18	NA	79739486	79704119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_79704434_79707372_79707428_79711516_79711591_79717778_79717847_79739280
transcript_29496.known	chr14	+	591	4	FSM	ENSMUSG00000022106.15	ENSMUST00000165646.8	591	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	3.29983164553722	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCTTTCCCAAATATTAAA	NA	False	NA	NA	False	NA	NA	NA	73380549	73392605	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_73380629_73388972_73389056_73391754_73391849_73392270
transcript_2950.known	chr1	-	2210	9	FSM	ENSMUSG00000026249.11	ENSMUST00000027467.11	2210	9	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_4	6.12244844812923	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCGGGCGTGGTGGTGCAC	NA	False	NA	NA	False	TATAAA	-35	NA	79836413	79771913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_79772760_79774542_79774627_79777184_79777272_79779172_79779274_79780563_79780763_79788270_79788469_79794444_79794673_79798993_79799275_79836227
transcript_29500.known	chr14	-	1796	6	FSM	ENSMUSG00000022108.9	ENSMUST00000022704.9	1796	6	0	0	0	0	multi-exon	FALSE	canonical	3	633	junction_1	88.6128658830082	909	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTGTGGATGCTGTTTC	NA	False	NA	NA	False	AATAAA	-26	NA	73622729	73599665	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_73600584_73601981_73602133_73603191_73603303_73603760_73603968_73605738_73605868_73622449
transcript_29506.known	chr14	+	1455	1	FSM	ENSMUSG00000022109.7	ENSMUST00000226256.2	1455	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	73747471	73748926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_73747500_73748900
transcript_29507.known	chr14	+	1328	7	FSM	ENSMUSG00000022109.7	ENSMUST00000022705.7	1328	7	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_6	14.7356333046425	2389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATTTTTTTCAATTTTT	NA	False	NA	15	True	AATAAA	-17	NA	73747464	73755985	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_73747626_73748594_73748662_73751244_73751416_73752729_73752788_73754075_73754163_73754646_73754779_73755333
transcript_2951.known	chr1	-	1129	1	FSM	ENSMUSG00000026249.11	ENSMUST00000191026.2	1129	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAACA	-29	NA	79836352	79835223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_79835200_79836400
transcript_29513.known	chr14	+	1545	12	FSM	ENSMUSG00000022110.14	ENSMUST00000022706.7	1545	12	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_11	475.849184386179	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGCTTTATTCTTTAGT	NA	False	NA	NA	False	AATAAA	-13	NA	73790205	73833223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_73790338_73797880_73798062_73806073_73806174_73806301_73806465_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813_73832914_73833137
transcript_2952.known	chr1	-	4709	16	FSM	ENSMUSG00000004364.15	ENSMUST00000163119.8	4709	16	0	0	0	0	multi-exon	FALSE	canonical	3	483	junction_14	55.1621448297854	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATTCTTTATGTCAGTGAA	NA	False	NA	NA	False	AATAAA	-21	NA	80318197	80242639	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_80245005_80246926_80247073_80249240_80249428_80254130_80254266_80255091_80255189_80255680_80255806_80258549_80258658_80259099_80259271_80260339_80260517_80261392_80261539_80264615_80264845_80266460_80266576_80267798_80267960_80281796_80281911_80300575_80300774_80317962
transcript_29520.known	chr14	+	2229	11	FSM	ENSMUSG00000022110.14	ENSMUST00000160507.8	2229	11	0	0	0	0	multi-exon	FALSE	canonical	3	1524	junction_2	74.4957045741565	4753	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGGAGTTATGGGTTTT	NA	False	NA	11	True	AATAAA	-14	NA	73790104	73833582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_73790338_73797880_73798062_73806073_73806174_73806301_73806465_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
transcript_2954.known	chr1	+	3636	7	FSM	ENSMUSG00000026142.16	ENSMUST00000027322.14	3636	7	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_1	15.8893745069534	322	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTGTTGCTCGAGTCA	NA	False	NA	14	True	AATAAA	-20	NA	82294172	82423087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_82294370_82318039_82318552_82320450_82320584_82346012_82346102_82348054_82348112_82355281_82355426_82420583
transcript_29560.known	chr14	-	3579	5	FSM	ENSMUSG00000033405.5	ENSMUST00000043813.3	3579	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	9.75640815054393	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATCTCAGAGACTTAATTG	NA	False	NA	NA	False	AATAAA	-21	NA	73785682	73756316	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_73759115_73760737_73760935_73762499_73762757_73769507_73769626_73785473
transcript_29561.known	chr14	+	1074	2	FSM	ENSMUSG00000022110.14	ENSMUST00000162723.2	1074	2	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTATGTGTAGTACCAGC	NA	False	NA	NA	False	AATAAA	-15	NA	73790071	73794267	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_73790338_73793459
transcript_29562.known	chr14	-	747	1	FSM	ENSMUSG00000075581.6	ENSMUST00000100510.6	747	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	617	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGTCTTTAAGAGCAACAA	NA	False	NA	NA	False	NA	NA	NA	74034730	74033983	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_74034000_74034700
transcript_29566.nic	chr14	+	1184	9	NIC	ENSMUSG00000021996.17	novel	1988	9	NA	NA	-109	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	441.393514196799	4899	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTTTAAATTGTTATTTT	NA	False	NA	13	True	AATAAA	-14	NA	74969627	74987288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_+_74969829_74973399_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982087_74982187_74982989_74983162_74987084
transcript_29585.known	chr14	+	918	5	FSM	ENSMUSG00000021996.17	ENSMUST00000177445.8	918	5	0	0	0	0	multi-exon	FALSE	canonical	3	1089	junction_1	132.367858636453	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGCTTTGGTGATTGG	NA	False	NA	NA	False	AATATA	-26	NA	74969758	74980038	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_74969829_74973399_74973475_74975868_74975958_74978596_74978696_74979453
transcript_29586.known	chr14	+	1988	9	FSM	ENSMUSG00000021996.17	ENSMUST00000022573.17	1988	9	0	0	0	0	multi-exon	FALSE	canonical	3	1089	junction_1	102.16133074701	3235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTACTACCCCAAATTCTT	NA	False	NA	NA	False	NA	NA	NA	74969736	74988205	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_74969829_74973399_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982087_74982187_74982989_74983158_74987084
transcript_29587.known	chr14	+	1117	9	FSM	ENSMUSG00000021996.17	ENSMUST00000176957.8	1117	9	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	425.971756692859	1882	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTTTAAATTGTTATTTT	NA	False	NA	13	True	AATAAA	-14	NA	74969823	74987288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_74969962_74973399_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982087_74982187_74982989_74983158_74987084
transcript_29588.known	chr14	+	759	4	FSM	ENSMUSG00000021996.17	ENSMUST00000176484.2	759	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	597.402339764045	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAACAAAATGAGCATTTC	NA	False	NA	NA	False	AATAAA	-10	NA	74969760	74976895	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_74969829_74973399_74973475_74975868_74975958_74976368
transcript_29589.known	chr14	+	853	8	FSM	ENSMUSG00000021996.17	ENSMUST00000177137.8	853	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	471.460301962456	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCCTCAGCCAAGAGAAT	NA	False	NA	NA	False	NA	NA	NA	74973406	74987165	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982087_74982187_74982989_74983162_74987084
transcript_29590.known	chr14	-	4694	20	FSM	ENSMUSG00000068015.9	ENSMUST00000088970.7	4694	20	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_4	23.7891243570067	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTTTGGATTGATTGACT	579	False	NA	-1	True	ATTAAA	-20	NA	75185306	74992114	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_74994584_75013020_75013099_75022930_75023069_75023720_75023831_75032350_75032432_75032736_75032810_75033477_75033532_75041660_75041698_75041800_75041891_75042908_75042993_75044913_75044982_75049039_75049156_75051045_75051152_75054508_75054573_75055931_75056060_75056933_75057071_75064037_75064144_75073088_75073216_75095416_75095562_75184823
transcript_29591.known	chr14	-	3125	19	FSM	ENSMUSG00000068015.9	ENSMUST00000228252.2	3125	19	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_17	17.7194355175815	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATCAAGAGAGCACCCCA	569	False	NA	NA	False	AATAAA	-7	NA	75185316	74993612	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_74994584_75013020_75013099_75022930_75023069_75023720_75023831_75032736_75032810_75033477_75033532_75041660_75041698_75041800_75041891_75042908_75042993_75044913_75044982_75049039_75049156_75051045_75051152_75054508_75054573_75055931_75056060_75056933_75057071_75064037_75064144_75073088_75073216_75095416_75095562_75184823
transcript_29593.nnic	chr14	-	626	2	Antisense	novelGene_ENSMUSG00000034959.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	5	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGAAATACTGTGTTGG	NA	False	NA	NA	False	TTTAAA	-4	NA	75304637	75285366	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr14_-_75285810_75304454
transcript_29595.known	chr14	+	3841	17	FSM	ENSMUSG00000021998.17	ENSMUST00000145303.8	3841	17	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	6.34921254960015	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGCATATGCTTAAAGG	NA	False	NA	NA	False	AATAAA	-21	NA	75373771	75468282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_75374083_75414254_75414374_75435516_75435604_75436719_75436884_75437819_75437950_75440075_75440209_75442004_75442087_75443558_75443725_75445859_75446003_75447878_75447975_75449770_75449967_75451924_75452004_75452548_75452664_75453767_75453902_75461510_75461635_75464406_75464532_75466645
transcript_29608.known	chr14	+	6144	19	FSM	ENSMUSG00000022000.12	ENSMUST00000227049.2	6144	19	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	25.8044043517888	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTTGTAGATTTTCCTT	NA	False	NA	14	True	AATAAA	-15	NA	75521825	75581866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_75522106_75529008_75529135_75529617_75529728_75531330_75531443_75543228_75543338_75546348_75546489_75547084_75547243_75553320_75553519_75559036_75559345_75560663_75561315_75561852_75562045_75564983_75565585_75567113_75567218_75567508_75568700_75569145_75569659_75573361_75573515_75574809_75575011_75576748_75576913_75581033
transcript_29612.nnic	chr14	-	716	3	Intergenic	novelGene_40	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCAGGCAGCTAGAACCAT	NA	False	NA	NA	False	NA	NA	NA	75616294	75611332	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr14_-_75611454_75613074_75613277_75615901
transcript_29617.known	chr14	-	3588	10	FSM	ENSMUSG00000022003.8	ENSMUST00000022580.8	3588	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_9	8.56348838577675	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATATGGCTTACAGTCATT	NA	False	NA	NA	False	AATAAA	-17	NA	76024477	75997556	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_76000131_76000768_76000850_76004342_76004482_76006255_76006381_76007005_76007102_76007610_76007697_76008878_76008974_76012434_76012583_76014435_76014567_76024364
transcript_29620.known	chr14	-	470	2	FSM	ENSMUSG00000022003.8	ENSMUST00000228379.2	470	2	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCTTTCTCCCCTTTGCCG	NA	False	NA	NA	False	NA	NA	NA	76024445	76014177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_76014567_76024364
transcript_29624.known	chr14	+	1169	6	FSM	ENSMUSG00000060126.15	ENSMUST00000110894.9	1169	6	0	0	0	0	multi-exon	FALSE	canonical	3	5160	junction_2	168.161113221815	56950	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGGAGTGTGTGAACTCA	838	False	NA	NA	False	NA	NA	NA	76082532	76085855	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_76082897_76083056_76083131_76083642_76083834_76084133_76084240_76084683_76084801_76085538
transcript_2963.known	chr1	+	1894	9	FSM	ENSMUSG00000026150.15	ENSMUST00000078332.13	1894	9	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_6	190.780264637095	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATGTCTATGGAAAGATT	NA	False	NA	13	True	AATAAA	-13	NA	82702610	82730111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713139_82713229_82719538_82719698_82724803_82724864_82728240_82728326_82729305
transcript_29631.known	chr14	+	996	5	FSM	ENSMUSG00000060126.15	ENSMUST00000142061.3	996	5	0	0	0	0	multi-exon	FALSE	canonical	1	33	junction_1	2393.82772719759	2018	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAACTAGTTGGAGACAAGT	1047	False	NA	NA	False	AAAAAG	-2	NA	76082741	76085965	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_76082897_76083642_76083834_76084133_76084240_76084683_76084801_76085538
transcript_29635.known	chr14	-	1467	8	FSM	ENSMUSG00000067995.5	ENSMUST00000088922.5	1467	8	0	0	0	0	multi-exon	FALSE	canonical	3	468	junction_6	43.0538343595692	596	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGATGGCAACTGTTATC	NA	False	NA	-17	True	AATAAA	-19	NA	76248305	76134376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_76135094_76144222_76144367_76155073_76155174_76186877_76186960_76232860_76233006_76234348_76234368_76245144_76245219_76248119
transcript_2964.known	chr1	+	1358	5	FSM	ENSMUSG00000026150.15	ENSMUST00000160972.8	1358	5	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_3	77.3090389281874	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATGTCTATGGAAAGATT	NA	False	NA	13	True	AATAAA	-13	NA	82706949	82730111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_82707158_82708833_82709004_82713139_82713229_82728240_82728326_82729305
transcript_29646.known	chr14	-	5389	8	FSM	ENSMUSG00000022008.5	ENSMUST00000022585.5	5389	8	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	16.688013540214	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGTTGGAATCTTCCTTT	NA	False	NA	-9	True	AATAAA	-17	NA	76348200	76323675	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_76328187_76332446_76332546_76335893_76336059_76336499_76336632_76339885_76339992_76343493_76343593_76344760_76344894_76348056
transcript_29648.nic	chr14	-	595	4	ISM	ENSMUSG00000022008.5	ENSMUST00000022585.5	5389	8	-72	16169	-72	-16169	5prime_fragment	FALSE	canonical	3	117	junction_2	14.5143607047182	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGAGCTTGAATGGTATC	NA	False	NA	NA	False	AATAAA	-13	NA	76348272	76339844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_76339992_76343493_76343593_76344760_76344894_76348056
transcript_29652.known	chr14	+	3974	10	FSM	ENSMUSG00000022009.2	ENSMUST00000022586.2	3974	10	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_7	36.4295362461713	1044	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACTTGCTGTCCGTCCTTG	NA	False	NA	NA	False	NA	NA	NA	76348330	76374819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_76348767_76349363_76349438_76351614_76351714_76352417_76352481_76353223_76353301_76361925_76362019_76363577_76363772_76368252_76368370_76370411_76370639_76372225
transcript_29657.known	chr14	-	855	1	FSM	ENSMUSG00000095427.3	ENSMUST00000095471.6	855	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	906	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGTTTTTATATGAGAA	NA	False	NA	NA	False	NA	NA	NA	76474985	76474130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_76474100_76475000
transcript_29659.known	chr14	+	797	3	FSM	ENSMUSG00000022010.20	ENSMUST00000142683.8	797	3	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	1130	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTGCTTCTGAGAGCTC	3103	False	NA	106	True	NA	NA	NA	76725198	76744438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_76725365_76742688_76742738_76743856
transcript_2966.known	chr1	-	828	1	FSM	ENSMUSG00000113925.2	ENSMUST00000222426.2	828	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTGTTGCCTCCTGTGTG	NA	False	NA	NA	False	AATAAA	-19	NA	82933734	82932906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_82932900_82933700
transcript_29660.known	chr14	+	1043	3	FSM	ENSMUSG00000022010.20	ENSMUST00000101618.9	1043	3	0	0	0	0	multi-exon	FALSE	canonical	2	49	junction_1	1143	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACAAAACCGACAACTGTC	3780	False	NA	NA	False	NA	NA	NA	76725875	76744610	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_76726116_76742688_76742738_76743856
transcript_29661.known	chr14	+	1476	3	FSM	ENSMUSG00000022010.20	ENSMUST00000177207.2	1476	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	1157	568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACGTGTTTCTATATGAC	6275	False	NA	29	True	AATAAA	-19	NA	76741653	76745203	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_76741734_76742688_76742738_76743856
transcript_29663.known	chr14	+	1762	3	FSM	ENSMUSG00000022010.20	ENSMUST00000022587.10	1762	3	0	0	0	0	multi-exon	FALSE	canonical	3	2255	junction_1	40	1115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGTGTTTCTATATGACGC	6539	False	NA	31	True	AATAAA	-21	NA	76741917	76745205	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_76742282_76742688_76742738_76743856
transcript_29667.known	chr14	+	801	2	FSM	ENSMUSG00000022010.20	ENSMUST00000134109.2	801	2	0	0	0	0	multi-exon	FALSE	canonical	3	2255	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAAAGGAGGGGAATGGGA	6591	False	NA	NA	False	NA	NA	NA	76741969	76743177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_76742282_76742688
transcript_29676.nnic	chr14	+	1150	5	NNC	ENSMUSG00000115092.2	novel	415	3	NA	NA	-10679	9	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	7.48331477354788	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCACCCTCCTGTTCACTG	NA	False	NA	15	True	AATAAA	-31	NA	76753352	76768195	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_76753538_76764032_76764413_76764810_76765012_76766569_76766669_76767910
transcript_29678.nnic	chr14	+	1547	4	NNC	ENSMUSG00000115092.2	novel	415	3	NA	NA	-10679	9	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	6.54896090146283	26	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCACCCTCCTGTTCACTG	NA	False	NA	15	True	AATAAA	-31	NA	76753352	76768195	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_76753538_76764032_76764202_76766569_76766669_76767101
transcript_2968.known	chr1	-	2664	3	FSM	ENSMUSG00000045658.17	ENSMUST00000168574.9	2664	3	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATTTTATTTATTTTTTT	440	False	NA	NA	False	AATAAA	-19	NA	84262366	84014016	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_84016229_84136952_84137100_84262061
transcript_29680.nnic	chr14	+	941	4	NNC	ENSMUSG00000115092.2	novel	415	3	NA	NA	-10679	232	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_2	4.24264068711928	104	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGAGTTCAGTTTACCTG	NA	False	NA	NA	False	AGTAAA	-18	NA	76753352	76768418	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_76753538_76764032_76764202_76766569_76766669_76767930
transcript_2969.known	chr1	-	450	3	FSM	ENSMUSG00000045658.17	ENSMUST00000176720.2	450	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	16	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTTGGCAGATTGCAGTT	662	False	NA	NA	False	NA	NA	NA	84262144	84058299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_84058520_84136952_84137100_84262061
transcript_29693.nnic	chr14	+	790	3	NNC	ENSMUSG00000115092.2	novel	415	3	NA	NA	-10679	230	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	1.5	55	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATGGAGTTCAGTTTACC	NA	False	NA	NA	False	AGTAAA	-16	NA	76753352	76768416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_76753538_76766569_76766669_76767910
transcript_29694.nnic	chr14	+	772	3	NNC	ENSMUSG00000115092.2	novel	415	3	NA	NA	-10679	232	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_1	0	35	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGAGTTCAGTTTACCTG	NA	False	NA	NA	False	AGTAAA	-18	NA	76753352	76768418	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_76753538_76766569_76766669_76767930
transcript_29695.nnic	chr14	+	707	3	NNC	ENSMUSG00000115092.2	novel	415	3	NA	NA	-10679	230	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	5.5	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATGGAGTTCAGTTTACC	NA	False	NA	NA	False	AGTAAA	-16	NA	76753352	76768416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_76753538_76766569_76766669_76767993
transcript_29698.known	chr14	-	865	5	FSM	ENSMUSG00000052584.11	ENSMUST00000227076.2	865	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	35.7587401903367	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATACCATGTGCGAGTTA	NA	False	NA	-4	True	AATAAA	-16	NA	76794298	76770255	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_76770687_76777345_76777495_76787421_76787495_76793870_76793989_76794204
transcript_2970.known	chr1	-	1431	1	FSM	ENSMUSG00000045658.17	ENSMUST00000187992.2	1431	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	462	False	NA	NA	False	NA	NA	NA	84262344	84260913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_84260900_84262300
transcript_29706.nic	chr14	-	698	2	ISM	ENSMUSG00000052584.11	ENSMUST00000227076.2	865	5	16686	0	16320	0	3prime_fragment	FALSE	canonical	3	106	junction_1	0	1208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATACCATGTGCGAGTTA	NA	False	NA	-4	True	AATAAA	-16	NA	76777612	76770255	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_76770687_76777345
transcript_29707.known	chr14	-	748	3	FSM	ENSMUSG00000052584.11	ENSMUST00000064517.9	748	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	9	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACCATGTGCGAGTTACC	NA	False	NA	-2	True	AATAAA	-18	NA	76794112	76770253	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_76770687_76787421_76787495_76793870
transcript_29718.nnic	chr14	+	1011	4	NNC	ENSMUSG00000101009.7	novel	1412	4	NA	NA	368	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	8.01387685344754	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTGCCTTCACGAGTGTG	NA	False	NA	NA	False	AATAAA	-30	NA	76915461	76924547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_76915820_76917565_76917761_76919165_76919350_76924273
transcript_29720.nnic	chr14	+	817	3	NNC	ENSMUSG00000101009.7	novel	1412	4	NA	NA	367	-1	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	7	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTGCCTTCACGAGTGTG	NA	False	NA	NA	False	AATAAA	-30	NA	76915460	76924547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_76915820_76919165_76919350_76924273
transcript_29721.nnic	chr14	+	828	3	NIC	ENSMUSG00000101009.7	novel	857	5	NA	NA	368	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	3	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGCCTTCACGAGTGTGT	NA	False	NA	NA	False	AATAAA	-31	NA	76915461	76924548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_+_76915820_76917565_76917761_76924273
transcript_29724.nic	chr14	+	757	3	ISM	ENSMUSG00000101009.7	ENSMUST00000191447.2	660	4	376	0	376	0	3prime_fragment	FALSE	canonical	0	0	junction_2	1	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAAAGACGTTTGCTTCCA	NA	False	NA	NA	False	AATAAA	-18	NA	76915469	76917828	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_+_76915820_76916894_76917039_76917565
transcript_29727.nnic	chr14	+	671	2	NIC	ENSMUSG00000101009.7	novel	1412	4	NA	NA	329	-1	combination_of_known_splicesites	FALSE	canonical	2	7	junction_1	0	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTGCCTTCACGAGTGTG	NA	False	NA	NA	False	AATAAA	-30	NA	76915422	76924547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_+_76915820_76924273
transcript_29728.nnic	chr14	+	874	2	NIC	ENSMUSG00000101009.7	novel	1412	4	NA	NA	329	141	combination_of_known_splicesites	FALSE	canonical	2	7	junction_1	0	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCATGGCTGCTGCTGTTTG	NA	False	NA	NA	False	ATTAAA	-23	NA	76915422	76924750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_+_76915820_76924273
transcript_29729.nnic	chr14	+	621	2	NIC	ENSMUSG00000101009.7	novel	660	4	NA	NA	368	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAAAGACGTTTGCTTCCA	NA	False	NA	NA	False	AATAAA	-18	NA	76915461	76917828	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_+_76915820_76917565
transcript_29730.known	chr14	+	2252	1	FSM	ENSMUSG00000101009.7	ENSMUST00000185809.2	2252	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAGAAGAAGAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	76915018	76917270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_76915000_76917300
transcript_29731.known	chr14	-	2444	8	FSM	ENSMUSG00000044350.15	ENSMUST00000062789.15	2444	8	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_3	13.9737362978714	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTTATCCATTCCTTT	NA	False	NA	1	True	NA	NA	NA	77274081	77261639	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_77262415_77266967_77267129_77268176_77268403_77270625_77270792_77271444_77271624_77272232_77272846_77273251_77273431_77273936
transcript_29734.nnic	chr14	-	2256	7	NIC	ENSMUSG00000044350.15	novel	2444	8	NA	NA	9	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_6	20.3258182833776	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTTATCCATTCCTTT	NA	False	NA	1	True	NA	NA	NA	77274072	77261639	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_-_77262415_77266967_77267129_77268176_77268403_77270625_77270792_77271444_77271624_77272232_77272846_77273936
transcript_29735.known	chr14	+	1721	6	FSM	ENSMUSG00000034795.15	ENSMUST00000048208.10	1721	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.16619037896906	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTCCACATTGAAAGGC	NA	False	NA	NA	False	AATAAA	-16	NA	77274211	77349644	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_77274412_77305299_77305394_77306276_77306390_77329107_77329507_77330209_77330327_77348846
transcript_29741.known	chr14	+	1195	4	FSM	ENSMUSG00000034795.15	ENSMUST00000095625.11	1195	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.4142135623731	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTCCACATTGAAAGGC	NA	False	NA	NA	False	AATAAA	-16	NA	77274221	77349644	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_77274412_77305299_77305394_77306276_77306390_77348846
transcript_29743.known	chr14	-	2391	5	FSM	ENSMUSG00000044350.15	ENSMUST00000139809.2	2391	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_4	12.1346610995116	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACAACAAAAAACAAAATCA	NA	False	NA	NA	False	NA	NA	NA	77274344	77269779	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_77270792_77271444_77271624_77272232_77272846_77273251_77273431_77273936
transcript_29746.known	chr14	-	468	1	FSM	ENSMUSG00000063556.6	ENSMUST00000099431.6	468	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23495	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTGAGTCCAGATGGCT	NA	False	NA	NA	False	NA	NA	NA	77489754	77489286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_77489300_77489800
transcript_29751.known	chr14	-	674	5	FSM	ENSMUSG00000022013.5	ENSMUST00000022590.5	674	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	265.32856989024	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGTCCTTCAGAAGAATG	NA	False	NA	-139	True	NA	NA	NA	78112565	78063786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_78063911_78077607_78077679_78081835_78081913_78090337_78090412_78112237
transcript_29754.known	chr14	-	6193	6	FSM	ENSMUSG00000022013.5	ENSMUST00000226459.2	6193	6	0	0	0	0	multi-exon	FALSE	canonical	3	520	junction_3	59.8618409339372	3132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACACTCAATGTTTCTGT	NA	False	NA	2	True	AATAAA	-22	NA	78112366	78058120	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_78063911_78077607_78077679_78081835_78081913_78090337_78090412_78094378_78094431_78112237
transcript_29755.known	chr14	-	760	6	FSM	ENSMUSG00000022016.18	ENSMUST00000227722.2	760	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	17.6476627347646	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGATAAAATTCAAATGCAG	NA	False	NA	NA	False	AGTAAA	-21	NA	78747432	78733187	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_78733387_78736274_78736436_78739629_78739677_78740378_78740463_78745164_78745321_78747319
transcript_29756.known	chr14	+	3406	26	FSM	ENSMUSG00000058997.9	ENSMUST00000227255.2	3406	26	0	0	0	0	multi-exon	FALSE	canonical	2	39	junction_16	9.45524193238862	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCAGTCTCCGTCCTTTTG	9408	False	NA	3	True	AATAAA	-19	NA	79086693	79302708	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_79086884_79106218_79106297_79145562_79145694_79149608_79149720_79162701_79162870_79171105_79171271_79172033_79172084_79172622_79172732_79174544_79174650_79184580_79184713_79186723_79186859_79186939_79187018_79219675_79219837_79221628_79221743_79231839_79232009_79232525_79232604_79246603_79246720_79256046_79256154_79258019_79258127_79263445_79263518_79275564_79275642_79294086_79294163_79296112_79296249_79297968_79298089_79299923_79300130_79302293
transcript_29759.known	chr14	-	620	1	FSM	ENSMUSG00000115539.2	ENSMUST00000227296.2	620	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGTGCAGGTCATCCTG	NA	False	NA	NA	False	NA	NA	NA	79204008	79203388	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_79203400_79204000
transcript_29763.known	chr14	-	918	5	FSM	ENSMUSG00000022018.8	ENSMUST00000022595.8	918	5	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_2	11.7046999107196	282	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTACTTTGAAAGCTGCC	NA	False	NA	-11	True	AATAAA	-14	NA	79539085	79526195	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_79526560_79527683_79527747_79529110_79529219_79538154_79538341_79538888
transcript_29765.known	chr14	-	13223	20	FSM	ENSMUSG00000022020.16	ENSMUST00000022597.15	13223	20	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_14	26.2237337258888	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGGTGTGATACTTGTA	NA	False	NA	NA	False	NA	NA	NA	79628218	79562708	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_79573372_79573827_79573926_79576973_79577118_79577477_79577577_79578426_79578536_79580565_79580760_79582334_79582549_79588812_79588942_79593160_79593314_79593806_79593977_79596895_79596969_79606517_79606625_79607441_79607538_79612175_79612296_79614807_79614962_79618934_79619070_79620675_79620834_79622093_79622199_79624461_79624547_79628001
transcript_29774.nic	chr14	-	1989	14	NIC	ENSMUSG00000022020.16	novel	2154	16	NA	NA	-1	-9568	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	42.6480019579572	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAAGTTTGCTTTGTTTTT	NA	False	NA	NA	False	TATAAA	-6	NA	79628219	79587984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_-_79588271_79588812_79588942_79593160_79593314_79593806_79593977_79596895_79596969_79606517_79606625_79607441_79607538_79612175_79612296_79614807_79614962_79618934_79619070_79620675_79620834_79622093_79622199_79624461_79624547_79628001
transcript_29777.known	chr14	-	368	3	FSM	ENSMUSG00000022020.16	ENSMUST00000165337.2	368	3	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_1	8.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAACTTATCTGTGAAACA	NA	False	NA	NA	False	NA	NA	NA	79628130	79622044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_79622199_79624461_79624547_79628001
transcript_29778.known	chr14	+	1799	11	FSM	ENSMUSG00000022022.4	ENSMUST00000022600.4	1799	11	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_10	10.5683489722851	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGATGTGCCTACAGAGT	NA	False	NA	1	True	AATAAA	-12	NA	79635211	79661027	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_79635477_79637131_79637240_79638861_79639288_79640264_79640357_79644016_79644099_79644285_79644394_79649081_79649255_79650426_79650545_79653317_79653455_79656627_79656727_79660836
transcript_29779.nic	chr14	+	876	3	ISM	ENSMUSG00000022022.4	ENSMUST00000227610.2	2008	10	-233	17995	-19	-17995	5prime_fragment	FALSE	canonical	3	90	junction_2	9.5	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTGTTTGTTTGTTTT	NA	False	NA	NA	False	ATTAAA	-13	NA	79635192	79639345	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_+_79635477_79637131_79637240_79638861
transcript_2978.known	chr1	+	1088	5	FSM	ENSMUSG00000073633.10	ENSMUST00000143656.8	1088	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	29.0086194087206	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTTCTGGTTTGTAAT	NA	False	NA	NA	False	AATAAA	-15	NA	84817573	84878208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_84817690_84825600_84825800_84858812_84858922_84874210_84874384_84877717
transcript_29780.known	chr14	+	4526	1	FSM	ENSMUSG00000043881.10	ENSMUST00000061222.9	4526	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGCTTCCTGGCTTTATG	3209	False	NA	NA	False	AATAAA	-15	NA	79663950	79668476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_79664000_79668500
transcript_29783.known	chr14	+	3888	9	FSM	ENSMUSG00000036461.17	ENSMUST00000110835.3	3888	9	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	8.6854763830201	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTCTTGTTTGTAATTCT	NA	False	NA	NA	False	ATTAAA	-39	NA	79753113	79819934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_79753211_79773562_79773863_79798186_79798368_79802901_79803013_79804589_79804755_79806660_79806745_79808162_79808356_79810611_79811059_79817624
transcript_29784.known	chr14	-	3704	10	FSM	ENSMUSG00000022023.7	ENSMUST00000022601.7	3704	10	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_1	16.1780219761789	761	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATCTGTGTTTGTTCTTC	NA	False	NA	NA	False	AATAAA	-18	NA	79718960	79697376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_79699570_79703622_79703790_79704712_79704904_79707544_79707621_79708126_79708174_79709791_79709966_79714242_79714373_79714481_79714545_79717812_79717886_79718370
transcript_298.known	SIRV4	-	570	5	FSM	SIRV4A	SIRV408	570	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2658.88059152719	10770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATTTGATATTTAGAGCGT	NA	False	NA	NA	False	NA	NA	NA	15122	8323	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV4_-_8373_8629_8748_8846_8991_13672_13829_15019
transcript_2980.known	chr1	+	901	4	FSM	ENSMUSG00000073633.10	ENSMUST00000097672.4	901	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	27.3536509852382	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTTCTGGTTTGTAAT	NA	False	NA	NA	False	AATAAA	-15	NA	84817561	84878208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_84817690_84858812_84858922_84874210_84874384_84877717
transcript_29805.known	chr14	+	897	11	FSM	ENSMUSG00000022024.11	ENSMUST00000228675.2	897	11	0	0	0	0	multi-exon	FALSE	canonical	3	1684	junction_7	92.1325132621487	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCAAAGAAGAAGAAAAG	NA	False	NA	16	True	NA	NA	NA	79825248	79862343	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_79825452_79832808_79832900_79834187_79834258_79834835_79834907_79840286_79840341_79840909_79840927_79844685_79844718_79846395_79846493_79847679_79847788_79857148_79857240_79862280
transcript_29806.known	chr14	-	1433	7	FSM	ENSMUSG00000022025.14	ENSMUST00000022603.8	1433	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACAATTTGTCCCAGATC	NA	False	NA	NA	False	AATAAA	-13	NA	79899610	79875132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_79875618_79879335_79879503_79882802_79882957_79887751_79887863_79894028_79894170_79898834_79898979_79899379
transcript_29808.nnic	chr14	+	599	3	Intergenic	novelGene_41	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCGAGAGACAAGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	80675431	80864937	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr14_+_80675594_80864440_80864557_80864616
transcript_2981.known	chr1	+	881	4	FSM	ENSMUSG00000073633.10	ENSMUST00000139562.8	881	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	23.5843639350783	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTTCTGGTTTGTAAT	4244	False	NA	NA	False	AATAAA	-15	NA	84844156	84878208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_84844265_84858812_84858922_84874210_84874384_84877717
transcript_29811.known	chr14	-	4582	28	FSM	ENSMUSG00000022021.15	ENSMUST00000022599.14	4582	28	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_5	42.6759570646689	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGACGTATGTCTCTTCT	NA	False	NA	NA	False	AATAAA	-24	NA	87378660	86892802	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_86894019_87009521_87009582_87010042_87010139_87047771_87047908_87066427_87066591_87072410_87072538_87089507_87089638_87103838_87104079_87143372_87143475_87147464_87147560_87156204_87156301_87202877_87202993_87203760_87204070_87206884_87206990_87216049_87216115_87219006_87219126_87222217_87222335_87223055_87223175_87223450_87223562_87237444_87237551_87240237_87240375_87244610_87244681_87244761_87244837_87274891_87275023_87310717_87310823_87328413_87328591_87352449_87352483_87378433
transcript_2982.known	chr1	+	1713	4	FSM	ENSMUSG00000073633.10	ENSMUST00000151737.2	1713	4	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	24.9977776790036	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTTCTGGTTTGTAAT	6959	False	NA	NA	False	AATAAA	-15	NA	84846871	84878208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_84847812_84858812_84858922_84874210_84874384_84877717
transcript_29820.nic	chr14	-	740	4	ISM	ENSMUSG00000022021.15	ENSMUST00000227666.2	3337	27	-98	301067	-33	2611	5prime_fragment	FALSE	canonical	3	194	junction_3	15.9652400197707	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTCTAGTATTCTCTTAA	NA	False	NA	NA	False	AATAAA	-14	NA	87378704	87310563	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_87310823_87328413_87328591_87352449_87352483_87378433
transcript_29821.known	chr14	-	558	4	FSM	ENSMUSG00000022021.15	ENSMUST00000226134.2	558	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	101.600524933027	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATGTGAGTTCACTTATT	NA	False	NA	NA	False	ATTAAA	-18	NA	87378579	87313174	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_87313377_87328413_87328591_87352449_87352483_87378433
transcript_29823.known	chr14	-	3337	27	FSM	ENSMUSG00000022021.15	ENSMUST00000227666.2	3337	27	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	43.0116951207432	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTATTCTTACCTGCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	87378606	87009496	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_87009582_87010042_87010139_87047771_87047908_87066427_87066593_87072412_87072538_87089507_87089638_87103838_87104079_87143372_87143475_87147464_87147560_87156204_87156301_87202877_87202993_87203760_87204070_87206884_87206990_87216049_87216115_87219006_87219126_87222217_87222335_87223055_87223175_87223450_87223562_87237444_87237551_87240237_87240375_87244610_87244681_87244761_87244837_87274891_87275023_87310717_87310823_87328413_87328591_87352449_87352483_87378433
transcript_29824.known	chr14	+	2657	14	FSM	ENSMUSG00000022019.17	ENSMUST00000168275.9	2657	14	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_12	16.6232175269033	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTCTGGTTCACTTGTC	NA	False	NA	7	True	AATAAA	-21	NA	87654074	87782940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_87654285_87694469_87694555_87696192_87696259_87709511_87709673_87712134_87712277_87714825_87714898_87718169_87718320_87722994_87723136_87723627_87723785_87724597_87724724_87743194_87744043_87749080_87749207_87776832_87776958_87782692
transcript_29828.nnic	chr14	+	822	2	Antisense	novelGene_ENSMUSG00000062611.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1544	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATCAAAATTTCTAAATC	NA	False	NA	NA	False	NA	NA	NA	88360387	88361269	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr14_+_88360873_88360932
transcript_2983.nnic	chr1	+	370	3	Intergenic	novelGene_4	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTCAGAGCCCGCCCCCA	NA	False	NA	NA	False	NA	NA	NA	84818337	84827763	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr1_+_84818546_84822070_84822113_84827643
transcript_29831.known	chr14	-	792	1	FSM	ENSMUSG00000062611.5	ENSMUST00000074245.5	792	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	44774	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATCCAGATTTTTAATA	NA	False	NA	NA	False	NA	NA	NA	88361244	88360452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_88360500_88361200
transcript_29832.nnic	chr14	-	1756	3	Intergenic	novelGene_42	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCACTCCACCCCACCTC	NA	False	NA	NA	False	NA	NA	NA	96356160	96345152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr14_-_96345261_96347378_96347551_96354684
transcript_29834.known	chr14	-	449	1	FSM	ENSMUSG00000060377.5	ENSMUST00000081987.5	449	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12208	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTTTATTTACATGTAT	NA	False	NA	-1	True	ATTAAA	-27	NA	99231754	99231305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_99231300_99231800
transcript_29836.nnic	chr14	-	2508	4	NNC	ENSMUSG00000033186.10	novel	2240	3	NA	NA	-24	284	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	385.421270242777	856	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTGACAATTCAGATAAATA	NA	False	NA	NA	False	GATAAA	-2	NA	99283594	99271695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_-_99271753_99271806_99273947_99277950_99278097_99283429
transcript_29839.known	chr14	-	952	3	FSM	ENSMUSG00000033186.10	ENSMUST00000227948.2	952	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	387	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCATTTCTCTGTAAAT	NA	False	NA	NA	False	ATTAAA	-19	NA	99283529	99273221	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_99273947_99277950_99278097_99283448
transcript_29843.known	chr14	-	818	2	FSM	ENSMUSG00000033186.10	ENSMUST00000228445.2	818	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGCATTATTTGTAGTTTG	NA	False	NA	NA	False	AAAAAG	-18	NA	99283570	99273269	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_99273947_99283429
transcript_29849.known	chr14	+	2726	12	FSM	ENSMUSG00000022070.8	ENSMUST00000022656.8	2726	12	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_1	51.3357124417381	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCGTTTTCCTTGTTCTGT	NA	False	NA	5	True	AATAAA	-16	NA	99283812	99311976	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_99284117_99284736_99284905_99287428_99287536_99290953_99291000_99294174_99294257_99297675_99297742_99298410_99298468_99298955_99299120_99299704_99299841_99305443_99305998_99310037_99310185_99311081
transcript_2986.known	chr1	-	3207	5	FSM	ENSMUSG00000026220.7	ENSMUST00000027422.7	3207	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	2.59807621135332	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAACAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	84912855	84883618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_84885151_84889916_84890895_84900574_84900719_84907007_84907286_84912580
transcript_29869.nnic	chr14	+	775	3	NNC	ENSMUSG00000022070.8	novel	2726	12	NA	NA	0	-24	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	107.5	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAGCAAAGTCCTGCACTG	NA	False	NA	NA	False	AATAAA	-20	NA	99283812	99285324	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_99284117_99284736_99284905_99285021
transcript_29871.known	chr14	+	1071	2	FSM	ENSMUSG00000022070.8	ENSMUST00000226823.2	1071	2	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_1	0	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAACT	NA	False	NA	NA	False	AATAAA	-44	NA	99283657	99285348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_99284117_99284736
transcript_29875.known	chr14	+	2797	18	FSM	ENSMUSG00000022064.11	ENSMUST00000022650.9	2797	18	0	0	0	0	multi-exon	FALSE	canonical	2	66	junction_8	18.7005171736119	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGACTGTAGAGTTTTTA	NA	False	NA	15	True	AATAAA	-17	NA	99337342	99491929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_99337566_99338464_99338738_99342604_99342706_99344734_99344934_99350405_99350526_99370671_99370806_99373888_99373998_99374477_99374660_99377972_99378099_99388078_99388178_99416750_99416917_99423916_99424068_99425153_99425245_99433784_99433888_99448375_99448507_99458994_99459080_99480274_99480446_99491596
transcript_2988.known	chr1	+	1248	6	FSM	ENSMUSG00000072109.12	ENSMUST00000159087.8	1248	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.4	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGTGATCAAGTTCTGGT	NA	False	NA	NA	False	ATTAAA	-16	NA	85084374	85091495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_85084412_85089210_85089288_85089529_85089681_85089912_85090033_85090171_85090307_85090767
transcript_29884.nic	chr14	+	1531	6	ISM	ENSMUSG00000022064.11	ENSMUST00000228354.2	2653	11	-59	46610	-21	19612	5prime_fragment	FALSE	canonical	3	99	junction_3	7.30479294709987	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAAACAAAAAAACGAA	NA	False	NA	NA	False	NA	NA	NA	99337321	99371265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_+_99337566_99338464_99338738_99342604_99342706_99344734_99344934_99350405_99350526_99370671
transcript_29885.nic	chr14	+	1606	6	ISM	ENSMUSG00000022064.11	ENSMUST00000228354.2	2653	11	-59	46535	-21	19687	5prime_fragment	FALSE	canonical	3	99	junction_3	7.30479294709987	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTATAATTTTTTATTA	NA	False	NA	NA	False	AATAAA	-19	NA	99337321	99371340	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_+_99337566_99338464_99338738_99342604_99342706_99344734_99344934_99350405_99350526_99370671
transcript_29886.known	chr14	+	1546	4	FSM	ENSMUSG00000022064.11	ENSMUST00000228246.2	1546	4	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_3	7.25718035235908	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCATTGTGACATGTGTT	NA	False	NA	NA	False	NA	NA	NA	99336859	99345200	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_99337566_99338464_99338738_99342604_99342706_99344734
transcript_2989.known	chr1	+	827	5	FSM	ENSMUSG00000072109.12	ENSMUST00000162453.8	827	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGGACTGAGTTCATTCTC	NA	False	NA	NA	False	NA	NA	NA	85084364	85091184	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_85084412_85089210_85089288_85089529_85089681_85090171_85090307_85090767
transcript_29890.known	chr14	+	1993	5	FSM	ENSMUSG00000022064.11	ENSMUST00000228279.2	1993	5	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_3	8.15475321515004	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAGGTATGGCCCACGTC	NA	False	NA	NA	False	AATAAA	-15	NA	99337393	99351653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_99337566_99338464_99338738_99342604_99342706_99344734_99344934_99350405
transcript_29894.nnic	chr14	+	1409	4	NNC	ENSMUSG00000005148.9	novel	3352	4	NA	NA	-182	-1603	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	1681.58701496202	194	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GGAAAAAAAAAAAAAGCAAA	NA	False	NA	NA	False	TTTAAA	-45	NA	99535944	99550869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_99536137_99538816_99539691_99540853_99540914_99550586
transcript_29895.known	chr14	+	3352	4	FSM	ENSMUSG00000005148.9	ENSMUST00000005279.8	3352	4	0	0	0	0	multi-exon	FALSE	canonical	3	3464	junction_1	114.952163963972	830	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGGTGCCTTCTTGACCC	NA	False	NA	22	True	AATAAA	-18	NA	99536126	99552472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_99536659_99538816_99539691_99540853_99540914_99550586
transcript_29896.known	chr14	-	5890	8	FSM	ENSMUSG00000072294.6	ENSMUST00000228216.2	5890	8	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_2	8.24126005820341	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTGTTCAGATATGCCT	NA	False	NA	NA	False	AATAAA	-11	NA	100522115	100108067	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_100112751_100137517_100137676_100179469_100179533_100224866_100225003_100260057_100260605_100347206_100347297_100387167_100387232_100521966
transcript_2990.nic	chr1	+	1191	5	NIC	ENSMUSG00000072109.12	novel	1248	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	0.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGTGATCAAGTTCTGGT	NA	False	NA	NA	False	ATTAAA	-16	NA	85084354	85091495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_85084412_85089529_85089681_85089912_85090033_85090171_85090307_85090767
transcript_29902.nic	chr14	-	892	2	ISM	ENSMUSG00000072294.6	ENSMUST00000226774.2	719	4	-11	126311	-11	99466	5prime_fragment	FALSE	canonical	2	16	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACCAACCAACCAAACAA	NA	False	NA	NA	False	NA	NA	NA	100521931	100386578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_100387232_100521692
transcript_29903.nic	chr14	-	834	2	ISM	ENSMUSG00000072294.6	ENSMUST00000228216.2	5890	8	-34	278513	-34	99464	5prime_fragment	FALSE	canonical	3	19	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAACCAACCAACCAAAC	NA	False	NA	NA	False	NA	NA	NA	100522149	100386580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_100387232_100521966
transcript_29904.known	chr14	-	519	3	FSM	ENSMUSG00000075486.11	ENSMUST00000168587.3	519	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	193.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAATAAAAATAATTAAAAG	NA	False	NA	-23	True	NA	NA	NA	101877893	101871531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_101871829_101874389_101874543_101877824
transcript_29908.known	chr14	-	1090	4	FSM	ENSMUSG00000075486.11	ENSMUST00000100339.9	1090	4	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_3	9.8770215933527	1215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTATGACGTGTCTTGTG	NA	False	NA	NA	False	ATTAAA	-18	NA	101878122	101871201	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_101871829_101874389_101874543_101877723_101877736_101877824
transcript_29909.known	chr14	-	542	2	FSM	ENSMUSG00000075486.11	ENSMUST00000131022.2	542	2	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATAGCGTCCTCCCTTT	NA	False	NA	NA	False	NA	NA	NA	101878122	101877491	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_101877736_101877824
transcript_2991.known	chr1	+	2017	4	FSM	ENSMUSG00000072109.12	ENSMUST00000162353.8	2017	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTAATCTCTGGGTATTTC	NA	False	NA	NA	False	NA	NA	NA	85083666	85091753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_85084412_85089529_85089681_85090171_85090307_85090767
transcript_29926.known	chr14	+	1270	4	FSM	ENSMUSG00000022111.10	ENSMUST00000227815.2	1270	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2159.4787951417	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGTTTTAGAACCATTCT	90	False	NA	NA	False	AGTAAA	-14	NA	101891402	101905258	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_101891556_101903196_101903326_101903947_101904105_101904427
transcript_29930.known	chr14	+	903	9	FSM	ENSMUSG00000022111.10	ENSMUST00000002289.8	903	9	0	0	0	0	multi-exon	FALSE	canonical	3	3225	junction_5	471.372729376658	16571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTTGTTTTTGCTAC	117	False	NA	22	True	AATAAA	-18	NA	101891429	101933561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_101891542_101891643_101891656_101903196_101903326_101903947_101904105_101904427_101904514_101905964_101906013_101928007_101928084_101932594_101932654_101933337
transcript_29931.known	chr14	+	935	8	FSM	ENSMUSG00000022111.10	ENSMUST00000226340.2	935	8	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_4	1942.45800521937	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGTGTTGTTTTTGCTA	3059	False	NA	21	True	AATAAA	-17	NA	101903231	101933560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_101903326_101903947_101904105_101904427_101904514_101905964_101906013_101923006_101923199_101928007_101928084_101932594_101932654_101933337
transcript_29936.known	chr14	+	6092	31	FSM	ENSMUSG00000033060.17	ENSMUST00000100337.10	6092	31	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_8	9.59652714961685	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTTTCTAATTATTTAA	NA	False	NA	39	True	AATAAA	-39	NA	101967392	102172146	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_101967662_102031676_102031748_102044889_102044960_102078307_102078415_102112887_102112919_102114241_102114356_102118238_102118438_102121597_102121851_102122726_102123009_102124372_102125093_102126112_102126143_102133902_102134021_102135992_102136136_102137506_102138081_102139499_102139806_102148201_102148317_102149434_102149597_102150675_102150783_102151712_102151774_102153123_102153181_102155066_102155093_102155375_102155481_102156047_102156141_102156644_102157088_102157924_102157991_102159532_102159586_102163531_102163746_102166611_102166888_102168607_102168717_102170005_102170109_102171331
transcript_29937.known	chr14	-	773	1	FSM	ENSMUSG00000115584.2	ENSMUST00000226515.2	773	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGTACACTGAGTTTTC	NA	False	NA	NA	False	AATAAA	-7	NA	102220199	102219426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_102219400_102220200
transcript_29938.known	chr14	+	541	1	FSM	ENSMUSG00000115512.2	ENSMUST00000227837.2	541	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTCTGGGGATAAATTCAG	NA	False	NA	NA	False	AAAAAG	-35	NA	103247681	103248222	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_103247700_103248200
transcript_29940.known	chr14	+	2445	4	FSM	ENSMUSG00000022125.8	ENSMUST00000022721.8	2445	4	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_2	4.96655480858378	713	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTTGCATCTTGTATCTT	NA	False	NA	6	True	NA	NA	NA	103307651	103315064	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_103307904_103309069_103309236_103310622_103310849_103313263
transcript_29943.nic	chr14	+	425	2	ISM	ENSMUSG00000022125.8	ENSMUST00000022721.8	2445	4	73	5749	73	-1417	5prime_fragment	FALSE	canonical	3	258	junction_1	0	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGGTCATATTAATTGATA	NA	False	NA	NA	False	NA	NA	NA	103307724	103309315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_+_103307904_103309069
transcript_29944.known	chr14	-	3352	5	FSM	ENSMUSG00000022124.16	ENSMUST00000145693.8	3352	5	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_4	32.5451609306207	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGTTGTATTTTTATAAC	9922	False	NA	-4	True	AATAAA	-13	NA	103336435	103318469	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_103320947_103326737_103326910_103329739_103329863_103332628_103332978_103336204
transcript_29945.known	chr14	-	14620	83	FSM	ENSMUSG00000033004.17	ENSMUST00000160758.8	14620	83	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_51	8.23914749579505	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGTGTAAAGTATTTTT	NA	False	NA	NA	False	AATAAA	-36	NA	103583854	103350846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_103351672_103354490_103354657_103355476_103355585_103357941_103358152_103359950_103360059_103360747_103360937_103361834_103361939_103364057_103364191_103364499_103364629_103365348_103365451_103367366_103367487_103368678_103368776_103371217_103371502_103372469_103372737_103373994_103374076_103376164_103376255_103376672_103376913_103378306_103378373_103380179_103380405_103380578_103380736_103381689_103381851_103383335_103383486_103384268_103384466_103385943_103386102_103389555_103389724_103391361_103391607_103392181_103392352_103392559_103394204_103410002_103410126_103411222_103411356_103412201_103412427_103419789_103419931_103422267_103422385_103423019_103423118_103425934_103426051_103429002_103429059_103432019_103432230_103433673_103433819_103434680_103434854_103436075_103436126_103436868_103436957_103437509_103437629_103438647_103438874_103441757_103441977_103442612_103442714_103444071_103444215_103446184_103446364_103448693_103448826_103449958_103450166_103452755_103452948_103457362_103457576_103460345_103460621_103461702_103461896_103462854_103462952_103464906_103464991_103466790_103466926_103469961_103470054_103479547_103479676_103479757_103479884_103480479_103480653_103485182_103485337_103485797_103486003_103489844_103489963_103497631_103497714_103500137_103500258_103506793_103506902_103513224_103513327_103513808_103513955_103520033_103520239_103522685_103522845_103524641_103524807_103525978_103526184_103526979_103527057_103528453_103528593_103528724_103528799_103532595_103532693_103534328_103534401_103534615_103534859_103536102_103536300_103543625_103543780_103551734_103551951_103561105_103561182_103583651
transcript_29946.known	chr14	-	344	2	FSM	ENSMUSG00000033004.17	ENSMUST00000162852.2	344	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACACGTTTTAGAACTTTC	NA	False	NA	NA	False	NA	NA	NA	103352832	103351568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_103351672_103352591
transcript_29947.nnic	chr14	+	303	3	NNC	ENSMUSG00000115762.2	novel	486	3	NA	NA	39932	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCGCGTGTGTTTGGATA	NA	False	NA	NA	False	ATTAAA	-28	NA	103741418	103750055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_103741527_103749176_103749266_103749949
transcript_29948.nnic	chr14	+	1554	3	NNC	ENSMUSG00000055717.14	novel	2863	7	NA	NA	34987	0	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	23.5	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCAGCTCACGCATGAATG	NA	False	NA	27	True	AATAAA	-17	NA	103936920	103942343	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_103937081_103939952_103940275_103941271
transcript_29949.known	chr14	-	3989	7	FSM	ENSMUSG00000022122.16	ENSMUST00000172237.2	3989	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.372677996249965	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAGAGCAGCTTATCTTT	NA	False	NA	NA	False	AATAAA	-14	NA	104081132	104052061	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_104054637_104057366_104057476_104058216_104058351_104059073_104059224_104060490_104060696_104060827_104060941_104080429
transcript_29952.known	chr14	-	3420	6	FSM	ENSMUSG00000022120.5	ENSMUST00000022716.4	3420	6	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_2	11.8490505948789	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGCTTTTGATGTCATCAT	NA	False	NA	-1	True	AATAAA	-18	NA	104760068	104714971	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_104717734_104740782_104740872_104743528_104743778_104745374_104745467_104747737_104747874_104759976
transcript_29953.known	chr14	-	1632	5	FSM	ENSMUSG00000022120.5	ENSMUST00000227640.2	1632	5	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	12.2551009787761	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGAGCTGATTATTTGAA	NA	False	NA	NA	False	AATAAA	-21	NA	104760081	104739821	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_104740872_104743528_104743778_104745374_104745467_104747737_104747874_104759976
transcript_29954.known	chr14	-	1056	6	FSM	ENSMUSG00000022120.5	ENSMUST00000228448.2	1056	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	37.7274435921651	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGGTCATGTGATGTGT	NA	False	NA	NA	False	GATAAA	-28	NA	104760069	104740053	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_104740451_104740782_104740872_104743528_104743778_104745374_104745467_104747737_104747874_104759976
transcript_29955.known	chr14	-	1113	4	FSM	ENSMUSG00000091509.8	ENSMUST00000165350.8	1113	4	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_2	13.0213499897497	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGTTTGGCTTTAATTTT	NA	False	NA	NA	False	ATTAAA	-10	NA	105352112	105346825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_105347239_105349754_105349839_105350904_105350964_105351555
transcript_29956.known	chr14	-	795	3	FSM	ENSMUSG00000091509.8	ENSMUST00000164319.2	795	3	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_2	0.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATGAATTAAAAAGTTAAACA	NA	False	NA	NA	False	TATAAA	-40	NA	105351897	105346844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_105347239_105350904_105350964_105351555
transcript_29957.known	chr14	+	2532	8	FSM	ENSMUSG00000053253.17	ENSMUST00000181969.8	2532	8	0	0	0	0	multi-exon	TRUE	canonical	3	271	junction_7	54.1807255433901	750	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTTGTATTTCTTGTATT	NA	False	NA	10	True	AATAAA	-17	NA	105496007	105546732	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_105496438_105525050_105525214_105529665_105529800_105532232_105532327_105535436_105535562_105539732_105539800_105542164_105542271_105545319
transcript_29960.known	chr14	+	1695	8	FSM	ENSMUSG00000053253.17	ENSMUST00000138283.2	1695	8	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_7	99.9552961302691	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGCCTCGTTTAGTGATT	NA	False	NA	6	True	AATAAA	-16	NA	105496187	105546305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_105496438_105525050_105525214_105529665_105529800_105532232_105532327_105535436_105535562_105539732_105539800_105542164_105542271_105545549
transcript_29967.nnic	chr14	+	959	6	NNC	ENSMUSG00000053253.17	novel	2532	8	NA	NA	-21	6067	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_5	165.687175122277	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTCCTCATTGTGAATC	NA	False	NA	NA	False	AATAAA	-22	NA	105496231	105538445	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_105496438_105525050_105525214_105529665_105529800_105532232_105532327_105535436_105535562_105538208
transcript_2997.known	chr1	+	1666	17	FSM	ENSMUSG00000026222.17	ENSMUST00000155094.8	1666	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.612372435695794	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATCTGGAATCATTGTGG	NA	False	NA	NA	False	GATAAA	-11	NA	85577708	85629282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_85577849_85587423_85587584_85590193_85590363_85591246_85591319_85592999_85593066_85594634_85594725_85597722_85597804_85601345_85601493_85602915_85602988_85606779_85606831_85608806_85608861_85619695_85619771_85621979_85622031_85624726_85624832_85627327_85627471_85628837_85628871_85629125
transcript_29975.known	chr14	+	384	1	FSM	ENSMUSG00000060143.8	ENSMUST00000073238.7	384	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	151652	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	AATAAA	-21	NA	105919261	105919645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_105919300_105919600
transcript_29978.known	chr14	-	2087	2	FSM	ENSMUSG00000022114.6	ENSMUST00000022709.6	2087	2	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	0	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGCTTGTTTTGTCTTA	NA	False	NA	-4	True	TATAAA	-30	NA	106134253	106129380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_106131236_106134021
transcript_29979.nnic	chr14	+	602	3	NNC	ENSMUSG00000022113.7	novel	584	2	NA	NA	-11	17552	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	1	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTTTTTTCTCCATAATT	NA	False	NA	NA	False	GATAAA	-28	NA	106343620	106390845	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_106343774_106389123_106389224_106390496
transcript_29980.known	chr14	+	3075	1	FSM	ENSMUSG00000022113.7	ENSMUST00000022708.7	3075	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAGTGACATGCTTATAT	NA	False	NA	NA	False	AATAAA	-15	NA	106343631	106346706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_106343600_106346700
transcript_29981.known	chr14	+	584	2	FSM	ENSMUSG00000022113.7	ENSMUST00000194236.2	584	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACGGTCTCTCGTGATTCTT	NA	False	NA	NA	False	NA	NA	NA	106343632	106373293	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_106343774_106372850
transcript_29983.known	chr14	+	2147	1	FSM	ENSMUSG00000058126.8	ENSMUST00000072359.8	2147	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGTTGCAGACTCAGT	NA	False	NA	NA	False	NA	NA	NA	113552039	113554186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_113552000_113554200
transcript_29984.known	chr14	+	4146	4	FSM	ENSMUSG00000058571.12	ENSMUST00000123239.2	4146	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.82842712474619	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAAAGAAAAGAAAG	NA	False	NA	NA	False	ATTAAA	-42	NA	117162726	117864610	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_117163508_117424073_117424233_117673063_117673456_117861796
transcript_29989.known	chr14	-	1682	12	FSM	ENSMUSG00000022130.11	ENSMUST00000022727.10	1682	12	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_8	15.4084875183551	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTAATGTCTTTTTATTT	250	False	NA	-4	True	ATTAAA	-20	NA	118370159	118349887	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_118350570_118351724_118351823_118352528_118352588_118353490_118353657_118354381_118354426_118355148_118355209_118357051_118357151_118359130_118359274_118364906_118364998_118365634_118365704_118368018_118368086_118370055
transcript_2999.known	chr1	+	1597	16	FSM	ENSMUSG00000026222.17	ENSMUST00000147552.8	1597	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.618241233033047	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTGTGGTTGACTTTTTT	NA	False	NA	NA	False	GATAAA	-22	NA	85577734	85629293	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_85577849_85587423_85587584_85590193_85590363_85591246_85591319_85592999_85593066_85594634_85594725_85597722_85597804_85601345_85601493_85602915_85602988_85606779_85606831_85619695_85619771_85621979_85622031_85624726_85624832_85627327_85627471_85628837_85628871_85629125
transcript_29990.known	chr14	-	2153	11	FSM	ENSMUSG00000022130.11	ENSMUST00000227350.2	2153	11	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_8	55.2185657184248	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTCATCATGATGCCCAGC	253	False	NA	NA	False	NA	NA	NA	118370156	118349322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_118350570_118351724_118351823_118352528_118352588_118353490_118353657_118354381_118354426_118355148_118355209_118357051_118357151_118359130_118359274_118365634_118365704_118368018_118368086_118370055
transcript_29996.nic	chr14	-	755	5	ISM	ENSMUSG00000022130.11	ENSMUST00000228543.2	1594	12	-14	8986	-14	8965	5prime_fragment	FALSE	canonical	3	141	junction_1	23.054283766797	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTAAAAAATCTGTATTC	228	False	NA	NA	False	AAAAAG	-17	NA	118370181	118358871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_-_118359274_118364906_118364998_118365634_118365704_118368018_118368086_118370055
transcript_29997.known	chr14	+	1875	9	FSM	ENSMUSG00000022131.4	ENSMUST00000022728.4	1875	9	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_5	22.6463987203264	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAATTAGCATTTGTTTATT	NA	False	NA	5	True	AATAAA	-24	NA	118374569	118400673	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_118374753_118377148_118377308_118385496_118385698_118390980_118391162_118391288_118391339_118395308_118395467_118397404_118397597_118398968_118399047_118400000
transcript_29998.nnic	chr14	+	1856	9	NNC	ENSMUSG00000022131.4	novel	1875	9	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	53.8678939629164	178	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAATTAGCATTTGTTTATT	NA	False	NA	5	True	AATAAA	-24	NA	118374563	118400673	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr14_+_118374753_118377173_118377308_118385496_118385698_118390980_118391162_118391288_118391339_118395308_118395467_118397404_118397597_118398968_118399047_118400000
transcript_3.known	ERCC-00002	+	1045	1	FSM	ERCC-00002A	DQ459430	1045	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	108253	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1045	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00002_+_0_1000
transcript_30.known	ERCC-00067	+	628	1	FSM	ERCC-00067A	DQ883653	628	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	628	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00067_+_0_600
transcript_3000.known	chr1	+	1978	12	FSM	ENSMUSG00000026222.17	ENSMUST00000054279.15	1978	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.616575453011388	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGTTCTGTGGTCATGG	NA	False	NA	NA	False	NA	NA	NA	85577734	85610839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_85577849_85587423_85587584_85590193_85590363_85591246_85591319_85592999_85593066_85594634_85594725_85597722_85597804_85601345_85601493_85602915_85602988_85606779_85606831_85608806_85608861_85609937
transcript_30000.known	chr14	+	2322	2	FSM	ENSMUSG00000090534.2	ENSMUST00000164755.2	2322	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACTATGTAACATTGCC	NA	False	NA	NA	False	CATAAA	-22	NA	118473643	118476171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_118474357_118474562
transcript_30003.known	chr14	+	2128	5	FSM	ENSMUSG00000022132.16	ENSMUST00000100314.4	2128	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAACGAACAAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119092143	119112901	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_119092622_119099107_119099270_119099360_119099443_119111012_119111121_119111603
transcript_30007.known	chr14	+	5141	12	FSM	ENSMUSG00000022136.9	ENSMUST00000022734.9	5141	12	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_10	14.8340684499182	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACTACTTGCTTCTTATT	2329	False	NA	15	True	AATAAA	-17	NA	119175387	119219109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_119175583_119190520_119190632_119195279_119195405_119198197_119198273_119205400_119205554_119207511_119207694_119208094_119208215_119209774_119209881_119210104_119210226_119212543_119212677_119214121_119214271_119215438
transcript_30012.known	chr14	-	1170	6	FSM	ENSMUSG00000042104.19	ENSMUST00000131424.8	1170	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	1.01980390271856	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCATTTATCTTAAGTCAT	NA	False	NA	NA	False	ATTAAA	-21	NA	119244129	119223829	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_119224326_119232357_119232485_119235508_119235626_119239182_119239298_119240237_119240399_119243975
transcript_30013.known	chr14	-	2716	6	FSM	ENSMUSG00000042104.19	ENSMUST00000148022.8	2716	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.35646599662505	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTTTTTGAATTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	119244877	119222450	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_119224326_119232357_119232485_119235508_119235626_119239182_119239298_119240237_119240399_119244556
transcript_30015.nnic	chr14	+	1354	2	Genic_Genomic	ENSMUSG00000115684.2	novel	663	1	NA	NA	-140	1824	multi-exon	FALSE	canonical	0	0	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTGAATGGCATGGGAGA	2553	False	NA	NA	False	AATAAA	-42	NA	119515695	119518322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr14_+_119516860_119518132
transcript_30017.known	chr14	+	4552	9	FSM	ENSMUSG00000022139.18	ENSMUST00000088419.13	4552	9	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	5.41842920042331	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGTGTTGCGGTCTTCCTT	6829	False	NA	7	True	AATAAA	-17	NA	120513080	120669109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_120513318_120562205_120562825_120616561_120616727_120622802_120623004_120626311_120626576_120633123_120633178_120633862_120634017_120642049_120642145_120666346
transcript_30020.known	chr14	+	4191	2	FSM	ENSMUSG00000051615.15	ENSMUST00000062117.14	4191	2	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTTGTGTTTGTTGCT	NA	False	NA	NA	False	AATAAA	-16	NA	120715855	120744606	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_120716453_120741012
transcript_30022.known	chr14	+	4518	26	FSM	ENSMUSG00000030662.11	ENSMUST00000032898.9	4518	26	0	0	0	0	multi-exon	TRUE	canonical	3	890	junction_17	126.92017018583	619	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTGCATTACTTCATTA	1831	False	NA	16	True	ATTAAA	-17	NA	121148635	121185411	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_121148756_121154767_121154849_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
transcript_3003.known	chr1	-	1353	6	FSM	ENSMUSG00000052760.17	ENSMUST00000064788.14	1353	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.4	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCCTTTATCCCCATTT	NA	False	NA	NA	False	AATAAA	-15	NA	85664350	85645409	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_85646090_85646745_85646851_85650818_85650903_85652841_85653011_85654179_85654337_85664192
transcript_30033.known	chr14	+	4885	27	FSM	ENSMUSG00000025555.15	ENSMUST00000026635.8	4885	27	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_13	25.8768133172464	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCTGTGTCTTCTCTTTG	NA	False	NA	35	True	NA	NA	NA	121272975	121521156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_121273338_121339400_121339595_121444665_121444771_121456788_121456832_121460051_121460131_121468040_121468139_121471141_121471257_121472477_121472626_121474547_121474644_121476039_121476204_121477385_121477455_121479798_121479875_121480764_121481021_121492819_121493008_121494128_121494219_121495244_121495379_121505284_121505367_121509091_121509330_121510155_121510287_121512786_121512856_121512997_121513088_121513648_121513732_121513804_121513918_121514310_121514478_121517247_121517356_121518231_121518384_121519721
transcript_3004.known	chr1	+	2369	10	FSM	ENSMUSG00000036707.17	ENSMUST00000097666.4	2369	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	164.622651187346	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTTCTTTCTTAGAGTAAT	NA	False	NA	NA	False	NA	NA	NA	85722231	85778086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_85722271_85723077_85723195_85746077_85746235_85763043_85763209_85765006_85765126_85769918_85770088_85772313_85772374_85775130_85775197_85775997_85776142_85776753
transcript_30041.known	chr14	-	2676	11	FSM	ENSMUSG00000063410.9	ENSMUST00000079817.8	2676	11	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_7	30.6098023515344	302	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCATTTTGCATACTATTC	7303	False	NA	-11	True	AATAAA	-12	NA	121616746	121523754	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_121524777_121529391_121529529_121530832_121530902_121531601_121531726_121532066_121532213_121534546_121534733_121539597_121539756_121540158_121540268_121545426_121545484_121574833_121575065_121616309
transcript_30043.known	chr14	-	3121	23	FSM	ENSMUSG00000025557.11	ENSMUST00000088386.8	3121	23	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	5.65119017669934	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATATGTGTTTGTGTGT	3138	False	NA	-6	True	AATAAA	-12	NA	121742664	121697032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_121698186_121699878_121699987_121702314_121702459_121703293_121703403_121703531_121703640_121708689_121708740_121710417_121710568_121711957_121712078_121713376_121713459_121715470_121715560_121715642_121715676_121715803_121715849_121717380_121717471_121718067_121718155_121719158_121719242_121722259_121722344_121724048_121724140_121724405_121724506_121727201_121727322_121728404_121728547_121728640_121728723_121729085_121729103_121742630
transcript_3005.known	chr1	+	3805	9	FSM	ENSMUSG00000036707.17	ENSMUST00000113360.8	3805	9	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_1	34.2579826463848	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTGATGTCCTTTAGAC	NA	False	NA	15	True	AATAAA	-16	NA	85721161	85779297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_85721543_85746077_85746235_85763043_85763209_85765006_85765126_85769918_85770088_85772313_85772374_85775130_85775197_85775997_85776142_85776753
transcript_30051.known	chr14	+	2139	9	FSM	ENSMUSG00000041765.7	ENSMUST00000039803.7	2139	9	0	0	0	0	multi-exon	FALSE	canonical	3	342	junction_2	40.200862863874	880	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTTCAGTAGTTTTTATA	8886	False	NA	16	True	AATAAA	-16	NA	122116031	122258446	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_122116187_122142534_122142663_122144702_122144823_122145622_122145733_122211020_122211145_122220679_122220728_122231636_122231883_122246202_122246326_122257361
transcript_30068.nic	chr14	+	972	6	NIC	ENSMUSG00000041765.7	novel	688	5	NA	NA	8	-799	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	151.832275883621	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTTTATTTTTTTACTGG	2018	False	NA	19	True	ATTAAA	-16	NA	122183733	122257647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_+_122183879_122211020_122211145_122220679_122220728_122231636_122231883_122246202_122246326_122257361
transcript_30069.nic	chr14	+	1771	6	NIC	ENSMUSG00000041765.7	novel	688	5	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	151.832275883621	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTTCAGTAGTTTTTATA	2018	False	NA	16	True	AATAAA	-16	NA	122183733	122258446	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_+_122183879_122211020_122211145_122220679_122220728_122231636_122231883_122246202_122246326_122257361
transcript_30083.known	chr14	-	434	2	FSM	ENSMUSG00000102112.2	ENSMUST00000187218.2	434	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAGATATATATTTTACCT	NA	False	NA	NA	False	AATAAA	-29	NA	122115682	122114136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_122114424_122115535
transcript_30084.known	chr14	-	355	2	FSM	ENSMUSG00000102112.2	ENSMUST00000185880.2	355	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCTTGATCGTCTTGTTC	NA	False	NA	NA	False	ATTAAA	-17	NA	122116821	122114270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_122114424_122116619
transcript_30085.known	chr14	-	416	2	FSM	ENSMUSG00000102112.2	ENSMUST00000187773.2	416	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTGTTTTAAAATATTTAC	NA	False	NA	NA	False	AATAAA	-14	NA	122115916	122114222	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_122114424_122115701
transcript_30086.known	chr14	+	913	2	FSM	ENSMUSG00000071229.4	ENSMUST00000045976.7	913	2	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	0	227	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGTTCTTTGTAACTGA	NA	False	NA	NA	False	AAGAAA	-3	NA	122272085	122275832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_122272425_122275258
transcript_3009.known	chr1	+	2230	6	FSM	ENSMUSG00000026223.16	ENSMUST00000027425.16	2230	6	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_3	14.9853261559434	450	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAAAAAACCCAAAACCT	NA	False	NA	-8	True	NA	NA	NA	85822001	85836396	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_85822511_85830730_85830872_85832934_85833124_85834142_85834254_85834728_85834880_85835267
transcript_30090.known	chr14	+	3107	17	FSM	ENSMUSG00000025544.14	ENSMUST00000026624.11	3107	17	0	0	0	0	multi-exon	TRUE	canonical	3	817	junction_12	125.603480743967	332	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTTCCAAAGTGTAGTAATT	NA	False	NA	18	True	ATTAAA	-20	NA	122344449	122397016	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_122344848_122361127_122361196_122363517_122363612_122370691_122370820_122374783_122374914_122377061_122377187_122378610_122378723_122379775_122379856_122380818_122380928_122382508_122382642_122384076_122384197_122385399_122385458_122387261_122387422_122388145_122388298_122389375_122389488_122392739_122392912_122396060
transcript_30113.known	chr14	+	1231	8	FSM	ENSMUSG00000025545.11	ENSMUST00000026625.7	1231	8	0	0	0	0	multi-exon	FALSE	canonical	3	643	junction_7	45.2372430997437	619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTATGGTTTTGCTATTGT	NA	False	NA	12	True	AATAAA	-22	NA	122419115	122639646	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_122419194_122548655_122548843_122608652_122608842_122613293_122613396_122615195_122615290_122616614_122616783_122621609_122621735_122639358
transcript_3012.known	chr1	+	4696	22	FSM	ENSMUSG00000062590.14	ENSMUST00000135973.8	4696	22	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_21	14.7732675162462	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTAAGGCTAAAAGGGGG	NA	False	NA	NA	False	NA	NA	NA	86082505	86187549	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_86082566_86084639_86084728_86087716_86087846_86090386_86090558_86092417_86092574_86097631_86097725_86099845_86099871_86101278_86101437_86104535_86104635_86113826_86113862_86116598_86116711_86118731_86118825_86121998_86122090_86124040_86124165_86125963_86126104_86127559_86127637_86130211_86130287_86135674_86135766_86140771_86140828_86172287_86172393_86179998_86180115_86184947
transcript_30130.nnic	chr14	+	1063	7	NIC	ENSMUSG00000025545.11	novel	1231	8	NA	NA	-19	0	combination_of_known_splicesites	FALSE	canonical	3	31	junction_1	249.458357691664	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTATGGTTTTGCTATTGT	NA	False	NA	12	True	AATAAA	-22	NA	122419096	122639646	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_+_122419194_122608652_122608842_122613293_122613396_122615195_122615290_122616614_122616783_122621609_122621735_122639358
transcript_30143.nic	chr14	+	1024	5	ISM	ENSMUSG00000025545.11	ENSMUST00000026625.7	1231	8	-64	24047	-64	-24040	5prime_fragment	FALSE	canonical	3	648	junction_1	14.6180539060437	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCATGTTCAAGAATGTATG	NA	False	NA	4	True	AATAAA	-17	NA	122419051	122615599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_+_122419194_122548655_122548843_122608652_122608842_122613293_122613396_122615195
transcript_3015.known	chr1	+	2160	21	FSM	ENSMUSG00000062590.14	ENSMUST00000131412.8	2160	21	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_14	12.2982722363753	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCATTCTCTTTATTGT	NA	False	NA	8	True	AATAAA	-13	NA	86082536	86180211	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_86082566_86084639_86084728_86087716_86087846_86090386_86090558_86092417_86092574_86097631_86097725_86099845_86099871_86101278_86101437_86104535_86104635_86113826_86113862_86116598_86116711_86118731_86118825_86121998_86122090_86124040_86124165_86125963_86126104_86127559_86127637_86130211_86130287_86135674_86135766_86140771_86140828_86172287_86172393_86179998
transcript_30152.nic	chr14	+	1755	3	ISM	ENSMUSG00000025545.11	ENSMUST00000026625.7	1231	8	-64	29568	-64	-29561	5prime_fragment	FALSE	canonical	3	648	junction_1	10.5	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGATTAATT	NA	False	NA	NA	False	NA	NA	NA	122419051	122610078	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_+_122419194_122548655_122548843_122608652
transcript_30161.known	chr14	-	4767	2	FSM	ENSMUSG00000041703.8	ENSMUST00000039118.7	4767	2	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTATTGCTACATTTTATC	NA	False	NA	-26	True	AATAAA	-13	NA	122703089	122694206	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_122697188_122701303
transcript_30163.known	chr14	-	1900	3	FSM	ENSMUSG00000085555.10	ENSMUST00000135485.8	1900	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTGATTTATCTCAACAG	NA	False	NA	NA	False	AGTAAA	-17	NA	122710991	122707695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_122709102_122710404_122710590_122710682
transcript_30164.known	chr14	-	1149	5	FSM	ENSMUSG00000085555.10	ENSMUST00000177306.2	1149	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.22474487139159	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACTTTGTAATACAATTTA	NA	False	NA	NA	False	AATAAA	-19	NA	122712611	122707788	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_122708002_122708802_122709102_122710404_122710590_122711859_122712015_122712314
transcript_30170.known	chr14	+	2592	24	FSM	ENSMUSG00000041650.16	ENSMUST00000038374.13	2592	24	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	20.0942015919555	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCTCTGCTTGCAATTTT	NA	False	NA	NA	False	TATAAA	-5	NA	122771750	123127356	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_+_122771872_122795126_122795205_122800190_122800239_122800330_122800400_122820028_122820143_122822468_122822523_122854165_122854298_122875792_122875830_122887663_122887743_122896089_122896193_122901665_122901761_122905932_122906084_122922293_122922438_122923514_122923590_122927510_122927580_122929591_122929668_122938466_122938578_122951434_122951538_122975313_122975417_123027767_123027867_123050605_123050660_123114175_123114317_123124458_123124537_123126898
transcript_3018.known	chr1	+	1024	6	FSM	ENSMUSG00000062590.14	ENSMUST00000153389.8	1024	6	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_5	12.3870900537616	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAACGGGAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	86082507	86098053	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_86082566_86084639_86084728_86087716_86087846_86090386_86090558_86092417_86092574_86097631
transcript_30183.nic	chr14	+	1179	10	ISM	ENSMUSG00000041650.16	ENSMUST00000038374.13	2592	24	-37	230857	-22	-5240	5prime_fragment	FALSE	canonical	3	76	junction_1	11.3409560421782	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAGTGTCTTCCATGACT	NA	False	NA	NA	False	NA	NA	NA	122771713	122896499	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr14_+_122771872_122795126_122795205_122800190_122800239_122800330_122800400_122820028_122820143_122822468_122822523_122854165_122854298_122875792_122875830_122887663_122887743_122896089
transcript_3019.nic	chr1	+	940	5	ISM	ENSMUSG00000062590.14	ENSMUST00000153389.8	1024	6	-52	5194	-46	300	5prime_fragment	FALSE	canonical	3	100	junction_4	9.2736184954957	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAGATTTATCCTCATTAT	NA	False	NA	NA	False	NA	NA	NA	86082455	86092859	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_86082566_86084639_86084728_86087716_86087846_86090386_86090558_86092417
transcript_30190.known	chr14	-	3416	18	FSM	ENSMUSG00000041594.19	ENSMUST00000037726.14	3416	18	0	0	0	0	multi-exon	TRUE	canonical	3	136	junction_13	13.8696352514015	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGGTTTCTTTTTAG	NA	False	NA	4	True	AGTAAA	-26	NA	123220695	123156382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_123157556_123158644_123158715_123163375_123163489_123164963_123165079_123170231_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085_123182251_123182919_123183013_123187900_123188005_123200709_123200798_123209151_123209369_123210581_123210698_123215485_123215699_123220583
transcript_30191.nic	chr14	-	3323	18	NIC	ENSMUSG00000041594.19	novel	3416	18	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_16	38.2839509410142	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGGTTTCTTTTTAG	NA	False	NA	4	True	AGTAAA	-26	NA	123220696	123156382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr14_-_123157556_123158644_123158715_123163375_123163489_123164963_123165079_123170231_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085_123182251_123182919_123183013_123187900_123188005_123200709_123200798_123209151_123209369_123210581_123210698_123215579_123215699_123220583
transcript_30197.known	chr14	-	524	4	FSM	ENSMUSG00000041625.16	ENSMUST00000161322.3	524	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	17.6131264181639	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGCTGTTGCTGTTTGG	NA	False	NA	-13	True	ATTAAA	-18	NA	123150560	123128282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_123128494_123129020_123129229_123137887_123137945_123150512
transcript_30199.known	chr14	-	609	3	FSM	ENSMUSG00000041625.16	ENSMUST00000162164.2	609	3	0	0	0	0	multi-exon	TRUE	canonical	3	7	junction_2	16.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGGACAGTGTGCAGTGC	NA	False	NA	NA	False	NA	NA	NA	123150497	123128897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_123129229_123137887_123137945_123150276
transcript_3020.known	chr1	+	1733	9	FSM	ENSMUSG00000062590.14	ENSMUST00000153653.2	1733	9	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_5	11.8947204675015	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATACTTGCCAGGCTGGTG	NA	False	NA	NA	False	TATAAA	-9	NA	86082540	86105423	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_86082566_86084639_86084728_86087716_86087846_86090386_86090558_86092417_86092574_86097631_86097725_86099845_86099871_86101278_86101437_86104535
transcript_30200.known	chr14	-	1076	3	FSM	ENSMUSG00000041625.16	ENSMUST00000038075.12	1076	3	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	3	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTTTGGTCCTTCTTTTG	NA	False	NA	-2	True	ATTAAA	-29	NA	123150574	123128271	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_123129229_123137887_123137945_123150512
transcript_30201.known	chr14	-	2237	14	FSM	ENSMUSG00000041594.19	ENSMUST00000135917.8	2237	14	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_9	13.9262639786257	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACAAACCTGTAACTTA	NA	False	NA	NA	False	AATAGA	-12	NA	123220652	123169896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr14_-_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085_123182251_123182919_123183013_123187900_123188005_123200709_123200798_123209151_123209369_123210581_123210698_123215485_123215699_123220583
transcript_30203.known	chr15	-	798	9	FSM	ENSMUSG00000091119.3	ENSMUST00000165386.2	798	9	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_4	8.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGAGCACTTAATGCATTA	8096	False	NA	NA	False	NA	NA	NA	3333008	3310108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_3310232_3310504_3310589_3312299_3312428_3319606_3319710_3321861_3321927_3323334_3323404_3327582_3327689_3330586_3330676_3332977
transcript_30213.nnic	chr15	-	737	6	NIC	ENSMUSG00000091119.3	novel	798	9	NA	NA	-50	126	combination_of_known_splicesites	FALSE	canonical	3	9	junction_3	10.2878569196893	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAATTGCATTTATTTTG	8046	False	NA	NA	False	AATAAA	-20	NA	3333058	3309982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_3310232_3310504_3310589_3312299_3312428_3327582_3327689_3330586_3330676_3332977
transcript_30214.known	chr15	+	2085	5	FSM	ENSMUSG00000064373.14	ENSMUST00000159216.10	2085	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	1.78535710713571	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTGTGTGTCTTTATTGT	9277	False	NA	14	True	AATAAA	-19	NA	3300402	3309989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_3300535_3304142_3304359_3305048_3305262_3306638_3306757_3308583
transcript_30218.known	chr15	-	1171	9	FSM	ENSMUSG00000055737.13	ENSMUST00000110698.9	1171	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.992156741649222	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACAGAATTTGTTTCCAAA	NA	False	NA	NA	False	TTTAAA	-7	NA	3612670	3357006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_3357169_3357455_3357625_3362828_3363008_3370400_3370574_3375990_3376015_3376953_3377084_3418129_3418196_3487411_3487491_3612481
transcript_30223.known	chr15	-	5076	6	FSM	ENSMUSG00000041935.11	ENSMUST00000046633.10	5076	6	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_4	35.1681674245332	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTCTTACTTTCTTTT	2180	False	NA	-10	True	AATAAA	-20	NA	4025226	4011516	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_4015962_4018072_4018188_4019036_4019169_4021199_4021347_4021839_4021947_4025096
transcript_30243.known	chr15	+	3527	17	FSM	ENSMUSG00000022186.15	ENSMUST00000110690.9	3527	17	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_7	29.8008362927955	518	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAATGTGTGTGTCCTCTTA	NA	False	NA	16	True	AATAAA	-20	NA	4055864	4184826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_4056332_4064741_4064851_4066572_4066664_4076946_4077083_4083196_4083347_4087150_4087258_4089417_4089479_4120649_4120758_4121892_4122008_4123496_4123592_4125953_4126003_4130608_4130682_4131285_4131362_4158315_4158406_4172273_4172355_4177046_4177149_4183209
transcript_30247.nnic	chr15	+	647	4	NNC	ENSMUSG00000097662.2	novel	3526	3	NA	NA	-12	7110	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2.05480466765633	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATGTGGTCTTGAAATT	NA	False	NA	NA	False	NA	NA	NA	4025508	4052450	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_4025611_4026886_4026967_4028795_4028867_4052056
transcript_30251.nnic	chr15	+	1712	5	Fusion	ENSMUSG00000115205.2_ENSMUSG00000041841.9	novel	835	4	NA	NA	-73	1	multi-exon	FALSE	canonical	0	0	junction_1	8737.23633007028	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTGGTGATCTAAGGTA	NA	False	NA	37	True	AATAAA	-18	NA	4914528	5148160	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr15_+_4915849_5146107_5146167_5146768_5146905_5147100_5147186_5148048
transcript_30252.known	chr15	+	921	7	FSM	ENSMUSG00000022155.10	ENSMUST00000226849.2	921	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGGCAGGACCCCTGTATC	NA	False	NA	NA	False	NA	NA	NA	4977963	4991554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_4978233_4978454_4978638_4980614_4980771_4981050_4981183_4981660_4981764_4982755_4982822_4991542
transcript_30253.known	chr15	+	556	4	FSM	ENSMUSG00000041841.9	ENSMUST00000227463.2	556	4	0	0	0	0	multi-exon	FALSE	canonical	3	713	junction_1	9620.00361515294	5323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCTGTGGTGATCTAAG	2304	False	NA	34	True	AATAAA	-15	NA	5146182	5148157	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_5146409_5146768_5146905_5147100_5147186_5148048
transcript_30256.known	chr15	+	410	4	FSM	ENSMUSG00000041841.9	ENSMUST00000226758.2	410	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	9929.13252337115	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATTTCAATCAGTCATAAAA	2552	False	NA	-4	True	NA	NA	NA	5146430	5148119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_5146549_5146768_5146905_5147100_5147186_5148048
transcript_30257.known	chr15	+	835	4	FSM	ENSMUSG00000041841.9	ENSMUST00000045356.9	835	4	0	0	0	0	multi-exon	FALSE	canonical	3	15185	junction_3	3886.71174930972	63820	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTCATAGTCCGTGTAG	2248	False	NA	NA	False	NA	NA	NA	5146126	5148622	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_5146167_5146768_5146905_5147100_5147186_5148048
transcript_30258.known	chr15	+	925	3	FSM	ENSMUSG00000041841.9	ENSMUST00000227635.2	925	3	0	0	0	0	multi-exon	FALSE	canonical	3	15185	junction_2	4434.5	5813	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTGTGGTGATCTAAGGT	2297	False	NA	36	True	AATAAA	-17	NA	5146175	5148159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_5146905_5147100_5147186_5148048
transcript_30259.nnic	chr15	-	542	2	Genic_Genomic	ENSMUSG00000068706.4	novel	482	1	NA	NA	-56	67	multi-exon	TRUE	canonical	1	2	junction_1	0	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATAGAAAATGTGTCACCAA	NA	False	NA	NA	False	NA	NA	NA	5150673	5150068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr15_-_5150264_5150326
transcript_3026.known	chr1	+	3112	25	FSM	ENSMUSG00000026229.18	ENSMUST00000027432.9	3112	25	0	0	0	0	multi-exon	FALSE	canonical	3	1352	junction_6	102.249660417801	1864	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGCTCAATCCACACACCA	NA	False	NA	NA	False	NA	NA	NA	85992340	86066873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435_86060523_86061359_86061507_86064684_86064839_86066801
transcript_30260.nnic	chr15	-	508	2	Genic_Genomic	ENSMUSG00000068706.4	novel	482	1	NA	NA	-56	67	multi-exon	FALSE	canonical	1	14	junction_1	0	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATAGAAAATGTGTCACCAA	NA	False	NA	NA	False	NA	NA	NA	5150673	5150068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr15_-_5150399_5150495
transcript_30261.known	chr15	-	482	1	FSM	ENSMUSG00000068706.4	ENSMUST00000090488.4	482	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9069	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAGCCTGGGACGGAGCC	NA	False	NA	NA	False	NA	NA	NA	5150617	5150135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_5150100_5150600
transcript_30263.known	chr15	+	1671	5	FSM	ENSMUSG00000022151.17	ENSMUST00000118193.8	1671	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	36.9323706252388	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTTTCCTTTTATTCTT	NA	False	NA	31	True	AGTAAA	-31	NA	5215005	5247817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_5215054_5219062_5219285_5237849_5237932_5241479_5241612_5246630
transcript_30265.known	chr15	+	1832	5	FSM	ENSMUSG00000022151.17	ENSMUST00000022751.15	1832	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	41.1430431543414	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTTTCCTTTTATTCTT	NA	False	NA	31	True	AGTAAA	-31	NA	5215040	5247817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_5215250_5219062_5219285_5237849_5237932_5241479_5241612_5246630
transcript_30274.nnic	chr15	+	557	3	Intergenic	novelGene_43	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATGATAGGGCGGCAAGC	NA	False	NA	NA	False	NA	NA	NA	6051688	6074177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr15_+_6051894_6073729_6073988_6074083
transcript_30276.nnic	chr15	+	2909	3	Intergenic	novelGene_44	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATGATAGGGCGGCAAGC	NA	False	NA	NA	False	NA	NA	NA	6052758	6074177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr15_+_6055316_6073729_6073988_6074083
transcript_30278.nnic	chr15	+	1312	3	Intergenic	novelGene_45	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATGATAGGGCGGCAAGC	NA	False	NA	NA	False	NA	NA	NA	6054170	6074177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr15_+_6055131_6073729_6073988_6074083
transcript_30281.known	chr15	+	1374	10	FSM	ENSMUSG00000022150.17	ENSMUST00000160134.8	1374	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	5.71115434484284	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTCTTTCTTGTGATGAA	8295	False	NA	NA	False	ATTAAA	-14	NA	6416259	6457246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_6416414_6446286_6446476_6447710_6447851_6449219_6449319_6451715_6451848_6452566_6452648_6453406_6453434_6453677_6453732_6454115_6454179_6456811
transcript_30286.known	chr15	+	4695	8	FSM	ENSMUSG00000050310.10	ENSMUST00000226181.2	4695	8	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_7	8.20900451346208	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAATGAATCAAAAATGT	NA	False	NA	NA	False	NA	NA	NA	6737861	6793058	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_6737933_6738113_6738162_6764845_6764944_6773808_6773874_6774929_6775062_6780138_6780203_6785941_6786069_6788968
transcript_30287.known	chr15	+	2633	7	FSM	ENSMUSG00000050310.10	ENSMUST00000226201.2	2633	7	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	4.31083905212585	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAAAGGGAAGATGGGC	NA	False	NA	NA	False	TTTAAA	-23	NA	6737861	6788096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_6737933_6738113_6738162_6764845_6764944_6773808_6773874_6774929_6775062_6780138_6780203_6785941
transcript_30291.nnic	chr15	+	858	7	NNC	ENSMUSG00000050310.10	novel	2633	7	NA	NA	-45	-1790	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_6	27.2498725787031	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAGCCTTCCTTGATTGAT	NA	False	NA	NA	False	ACTAAA	-2	NA	6737814	6786306	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_6737933_6738113_6738162_6764845_6764944_6773808_6773874_6774929_6775062_6780138_6780203_6785973
transcript_30293.known	chr15	+	1211	10	FSM	ENSMUSG00000050310.10	ENSMUST00000228918.2	1211	10	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	10.5946643920535	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATAAAAAATAAAAAAA	NA	False	NA	NA	False	AGTAAA	-5	NA	6737859	6794898	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_6737933_6738113_6738162_6764845_6764944_6773808_6773874_6774929_6775062_6780138_6780203_6785941_6786069_6788968_6789139_6793760_6793829_6794532
transcript_30294.known	chr15	+	9312	38	FSM	ENSMUSG00000050310.10	ENSMUST00000061656.8	9312	38	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_28	25.9902212323754	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGGTGGTGTTGACATT	NA	False	NA	6	True	AATAAA	-21	NA	6737863	6829882	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_6737933_6738113_6738162_6764845_6764944_6773808_6773874_6774929_6775062_6780138_6780203_6785941_6786069_6788968_6789139_6793760_6793829_6794532_6794601_6797534_6797618_6798726_6798815_6799225_6799317_6799408_6799476_6799603_6799685_6801612_6801714_6803289_6803456_6804087_6804190_6804312_6804360_6805530_6805667_6806234_6806435_6806796_6806924_6807410_6807576_6807721_6807799_6808668_6808748_6811137_6811248_6811644_6811733_6812562_6812656_6813038_6813146_6813412_6813643_6815856_6816863_6818911_6819090_6820020_6820106_6821073_6821308_6823454_6823614_6823925_6824050_6825376_6825516_6825642
transcript_30297.known	chr15	+	299	2	FSM	ENSMUSG00000054263.13	ENSMUST00000226826.2	299	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGACTGGCTGTCATGAG	NA	False	NA	NA	False	NA	NA	NA	7159047	7162134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_7159308_7162095
transcript_30298.known	chr15	+	279	1	FSM	ENSMUSG00000115497.2	ENSMUST00000228223.2	279	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	313	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGAACGCTTCACGAATT	NA	False	NA	6	True	AGTAAA	-28	NA	7790194	7790473	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_7790200_7790500
transcript_30303.known	chr15	-	2126	18	FSM	ENSMUSG00000039828.8	ENSMUST00000045766.8	2126	18	0	0	0	0	multi-exon	TRUE	canonical	3	158	junction_1	88.3053055575902	556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGATTTTGTCCTTTCT	NA	False	NA	-6	True	AATAAA	-14	NA	8128675	7902542	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_7902735_7913761_7913925_7915043_7915161_7916809_7916890_7918556_7918658_7949967_7950107_7951549_7951635_7953688_7953789_8006448_8006624_8049069_8049147_8065211_8065366_8072191_8072326_8075912_8075973_8108643_8108849_8111945_8112067_8123159_8123244_8128439_8128506_8128602
transcript_30304.known	chr15	-	1130	4	FSM	ENSMUSG00000039828.8	ENSMUST00000227371.2	1130	4	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_1	79.3823378060608	1734	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTGCATTATTCAGCAATA	NA	False	NA	NA	False	NA	NA	NA	8128693	8121710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_8122600_8123159_8123244_8128439_8128506_8128602
transcript_30305.known	chr15	+	7832	35	FSM	ENSMUSG00000022142.9	ENSMUST00000163765.3	7832	35	0	0	0	0	multi-exon	TRUE	canonical	3	205	junction_4	36.1069753346922	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATGGTGTTTGTATACTA	NA	False	NA	NA	False	ATTAAA	-13	NA	8138756	8190731	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_8139087_8141766_8141905_8143127_8143225_8144962_8145034_8145913_8146007_8146717_8146885_8147465_8147572_8148662_8148737_8149917_8150010_8150946_8151045_8151539_8151693_8153706_8153808_8157891_8158063_8159608_8159720_8160945_8161041_8163558_8163648_8164146_8164210_8165241_8165390_8166116_8166184_8167337_8167454_8169334_8169433_8170712_8170844_8172451_8172644_8173534_8173674_8174971_8175108_8176626_8176781_8176981_8177087_8177780_8177936_8180241_8180372_8181196_8181311_8182599_8182721_8183123_8183235_8184399_8184537_8186169_8186277_8187109
transcript_30308.nic	chr15	+	477	2	ISM	ENSMUSG00000022142.9	ENSMUST00000230017.2	4391	34	-23	44567	-23	-22465	5prime_fragment	FALSE	canonical	3	237	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCGTTATTATAAATCTT	NA	False	NA	NA	False	GATAAA	-15	NA	8138796	8141953	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_+_8139087_8141766
transcript_30312.known	chr15	+	10469	53	FSM	ENSMUSG00000039801.8	ENSMUST00000110617.2	10469	53	0	0	0	0	multi-exon	TRUE	canonical	2	15	junction_2	13.020182330866	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTGCCCACAGTCTGT	NA	False	NA	8	True	AATAAA	-15	NA	8198589	8300642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_8198974_8199789_8199879_8201176_8201306_8204209_8204346_8204440_8204561_8205602_8205836_8207820_8207928_8209241_8209399_8210362_8210467_8211599_8211783_8215566_8215817_8215982_8216136_8216307_8217063_8217870_8218080_8218280_8218362_8223807_8223973_8228664_8228824_8230617_8230847_8231677_8231818_8232744_8232963_8233156_8233322_8239445_8239585_8241852_8241963_8242112_8242272_8243190_8243300_8245791_8246084_8247906_8248880_8250341_8250452_8251266_8251434_8251820_8251892_8252554_8252635_8256396_8256578_8256769_8257052_8258073_8258815_8259698_8259854_8260595_8260726_8261529_8261585_8263247_8263353_8271753_8271826_8273286_8273397_8273704_8273898_8274092_8274246_8276389_8276740_8280460_8280549_8281632_8281798_8287797_8287829_8289217_8289350_8290003_8290170_8291810_8291870_8292411_8292565_8293812_8293926_8299102_8299282_8300162
transcript_30313.nic	chr15	-	1596	9	ISM	ENSMUSG00000022141.8	ENSMUST00000052965.8	9423	47	-193	68533	-193	-68533	5prime_fragment	FALSE	canonical	2	7	junction_5	2.87228132326901	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAATTAGGCAAGGATGAA	NA	False	NA	NA	False	NA	NA	NA	8474140	8388633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_8388751_8390399_8390497_8391201_8391363_8395275_8395428_8396113_8396214_8398944_8399073_8401514_8401681_8403443_8403587_8473608
transcript_30314.known	chr15	-	9423	47	FSM	ENSMUSG00000022141.8	ENSMUST00000052965.8	9423	47	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_43	23.7522658356028	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTGTTTCCATTTGAA	NA	False	NA	0	True	AATAAA	-22	NA	8473947	8320100	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_8321075_8321620_8321810_8322567_8322743_8324994_8325270_8326215_8326363_8330178_8330380_8330773_8330882_8332319_8332511_8332876_8333051_8335332_8335424_8336353_8336509_8337048_8337143_8337329_8337471_8340628_8340766_8341817_8341927_8347846_8347901_8348940_8349040_8351969_8352105_8352892_8353040_8353135_8353235_8353731_8353835_8353928_8354144_8355167_8355258_8356482_8356627_8357228_8357362_8357875_8357959_8359661_8359801_8361872_8361974_8362491_8362573_8363064_8363217_8364333_8364566_8364667_8364755_8366337_8366442_8367992_8368083_8368164_8368237_8368358_8368557_8372958_8373142_8379687_8381296_8388123_8388751_8390399_8390497_8391201_8391363_8395275_8395428_8396113_8396214_8398944_8399073_8401514_8401681_8403443_8403587_8473608
transcript_30316.known	chr15	-	4163	10	FSM	ENSMUSG00000005360.15	ENSMUST00000005493.14	4163	10	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_5	8.52447456836295	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATTTGTATGTTATTTAT	NA	False	NA	NA	False	AATAAA	-22	NA	8740248	8663607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_8665824_8668539_8668675_8671665_8671861_8672383_8672618_8675143_8675437_8679026_8679070_8680332_8680538_8717771_8717910_8738045_8738324_8739822
transcript_30318.nnic	chr15	-	1320	5	NNC	ENSMUSG00000005360.15	novel	964	3	NA	NA	-39	-14919	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	26.9953699733862	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAACTTTGCAGCCTGAGAA	NA	False	NA	NA	False	AATAAA	-17	NA	8740287	8686658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_8686996_8717194_8717297_8717771_8717910_8738045_8738324_8739822
transcript_30319.known	chr15	-	1252	5	FSM	ENSMUSG00000005360.15	ENSMUST00000153455.8	1252	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	23.8156986040721	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAAAAATGCATAACAT	NA	False	NA	NA	False	NA	NA	NA	8739900	8710004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_8710661_8717194_8717297_8717771_8717910_8738045_8738324_8739822
transcript_30322.known	chr15	-	728	5	FSM	ENSMUSG00000005360.15	ENSMUST00000157065.2	728	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	27.3072792493137	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGACTTTCCTTTGTGGTT	NA	False	NA	NA	False	ATTAAA	-18	NA	8739893	8715499	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_8715639_8717194_8717297_8717771_8717910_8738045_8738324_8739822
transcript_30325.nnic	chr15	-	1166	4	NIC	ENSMUSG00000005360.15	novel	1252	5	NA	NA	-39	-371	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	28.3313724811677	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCCAACACTGGATAGTT	NA	False	NA	NA	False	ATTAAA	-17	NA	8740287	8710375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_8710661_8717771_8717910_8738045_8738324_8739822
transcript_30327.known	chr15	-	964	3	FSM	ENSMUSG00000005360.15	ENSMUST00000129325.2	964	3	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	2	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAACAGCCTTTCTCTGA	NA	False	NA	NA	False	NA	NA	NA	8739980	8717381	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_8717910_8738045_8738324_8739822
transcript_30328.known	chr15	-	1373	2	FSM	ENSMUSG00000005360.15	ENSMUST00000133309.2	1373	2	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACCTAAGT	NA	False	NA	NA	False	AATACA	-5	NA	8739965	8737093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_8738324_8739822
transcript_30329.known	chr15	+	4135	13	FSM	ENSMUSG00000022253.18	ENSMUST00000190591.10	4135	13	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_7	89.5046553724069	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATATAAATTTAGAAT	6	True	NA	NA	False	NA	NA	NA	9071339	9110979	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_9071846_9083349_9083439_9084241_9084331_9085804_9085887_9091254_9091339_9092802_9092940_9096102_9096182_9098897_9098964_9100194_9100291_9103070_9103127_9103413_9103468_9106816_9106941_9108306
transcript_3033.nic	chr1	+	2967	22	ISM	ENSMUSG00000026229.18	ENSMUST00000027432.9	3112	25	-261	6384	-29	0	5prime_fragment	FALSE	canonical	3	1352	junction_6	88.9904323630029	1609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAAAAAGGAGGAGGA	NA	False	NA	48	True	NA	NA	NA	85992079	86060489	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435
transcript_30332.known	chr15	+	8098	18	FSM	ENSMUSG00000039704.9	ENSMUST00000227556.3	8098	18	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_6	5.43473386468287	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGTTGATTATTTATGT	32	False	NA	11	True	AATAAA	-21	NA	9140636	9202569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_9140828_9149062_9149293_9149541_9149640_9151570_9151667_9156292_9156461_9157299_9157511_9165874_9165950_9171183_9171298_9172143_9172328_9175210_9175393_9175872_9176007_9177738_9177845_9178348_9178447_9182571_9182676_9183996_9184044_9186682_9186789_9194761_9194889_9196742
transcript_30335.known	chr15	-	3118	10	FSM	ENSMUSG00000054115.13	ENSMUST00000096482.10	3118	10	0	0	0	0	multi-exon	TRUE	canonical	3	163	junction_7	20.0690167197789	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTGAGCTGCTTTTTAT	NA	False	NA	NA	False	AATAAA	-20	NA	9140452	9112072	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_9113956_9116947_9117056_9117177_9117230_9121638_9121770_9122323_9122423_9123956_9124092_9125146_9125291_9127972_9128085_9139518_9139791_9140270
transcript_30336.known	chr15	-	1391	3	FSM	ENSMUSG00000054115.13	ENSMUST00000191316.2	1391	3	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_1	23	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTAAAAACCTTGCGTG	NA	False	NA	NA	False	NA	NA	NA	9140439	9127134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_9128085_9139518_9139791_9140270
transcript_30340.known	chr15	+	949	5	FSM	ENSMUSG00000039676.5	ENSMUST00000042360.5	949	5	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_4	9.67923034130297	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGCCTCCTTTGAAGCT	-3	True	NA	9	True	AATAAA	-22	NA	9436113	9466124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_9436254_9457782_9457920_9461742_9461921_9462676_9462887_9465840
transcript_30341.nnic	chr15	+	910	5	NNC	ENSMUSG00000039676.5	novel	949	5	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_2	33.5857112474933	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGCCTCCTTTGAAGCT	8	True	NA	9	True	AATAAA	-22	NA	9436102	9466124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_9436254_9457782_9457920_9461792_9461921_9462676_9462887_9465840
transcript_30345.known	chr15	+	739	4	FSM	ENSMUSG00000039676.5	ENSMUST00000226688.2	739	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	38.1138644939957	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGCCTCCTTTGAAGCT	-3	True	NA	9	True	AATAAA	-22	NA	9436113	9466124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_9436254_9457782_9457920_9461742_9461921_9465840
transcript_30346.known	chr15	-	1639	10	FSM	ENSMUSG00000072663.13	ENSMUST00000162780.8	1639	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	3.74495545474505	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGGCATTTTATTTAAC	NA	False	NA	NA	False	AATAAA	-20	NA	9748906	9704394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_9704628_9713186_9713375_9716417_9716607_9717536_9717724_9723679_9723745_9725200_9725342_9727496_9727668_9729702_9729956_9740597_9740701_9748797
transcript_30347.known	chr15	-	1422	9	FSM	ENSMUSG00000072663.13	ENSMUST00000159368.2	1422	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	3.23795846174715	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTGTGGCATTTTATTT	-20	True	NA	NA	False	AATAAA	-17	NA	9748863	9704397	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_9704628_9713186_9713375_9716417_9716607_9717536_9717724_9723679_9723745_9725200_9725342_9729702_9729956_9740597_9740701_9748797
transcript_30349.known	chr15	-	2060	12	FSM	ENSMUSG00000044224.17	ENSMUST00000136591.8	2060	12	0	0	0	0	multi-exon	TRUE	canonical	3	660	junction_1	60.8163473021321	763	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTGCTTCAGTGATTTA	-35	True	NA	-15	True	ATTAAA	-23	NA	10470602	10446841	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_10447313_10447781_10447858_10449661_10449835_10451640_10451684_10452291_10452451_10454855_10454944_10460040_10460193_10461205_10461511_10461961_10462085_10462308_10462433_10463972_10464067_10470350
transcript_30360.known	chr15	-	479	7	FSM	ENSMUSG00000022247.13	ENSMUST00000169050.8	479	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1155.46043011241	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGCTGAATTAAAGATGACT	NA	False	NA	NA	False	NA	NA	NA	10485995	10479223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_10479233_10479334_10479385_10479666_10479738_10481801_10481846_10483380_10483449_10485440_10485503_10485820
transcript_30364.known	chr15	-	2664	10	FSM	ENSMUSG00000022247.13	ENSMUST00000022855.12	2664	10	0	0	0	0	multi-exon	FALSE	canonical	3	2074	junction_1	190.855449147086	5251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATAAGGCTTTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-25	NA	10486033	10474864	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_10476683_10476892_10477022_10478754_10478857_10478978_10479030_10479158_10479233_10479334_10479385_10479666_10479738_10481801_10481846_10483380_10483493_10485820
transcript_30365.known	chr15	-	443	5	FSM	ENSMUSG00000022247.13	ENSMUST00000168761.2	443	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	1278.51952957317	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGAGAATATATTGATAAA	NA	False	NA	NA	False	AAGAAA	-22	NA	10485973	10479665	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_10479738_10481801_10481846_10483380_10483493_10485440_10485503_10485820
transcript_30370.nnic	chr15	+	1235	7	NNC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	-6	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	359.073653849581	224	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCCGACTTACTGTACTG	-2	True	NA	15	True	AATAAA	-20	NA	10486097	10493763	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_10486159_10486538_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239_10493477_10493557
transcript_30373.nnic	chr15	+	1438	7	NNC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	324.625639091486	527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCCGACTTACTGTACTG	4	True	NA	15	True	AATAAA	-20	NA	10486103	10493763	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_10486368_10486538_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239_10493477_10493557
transcript_30379.known	chr15	+	1514	6	FSM	ENSMUSG00000022248.15	ENSMUST00000022856.15	1514	6	0	0	0	0	multi-exon	FALSE	canonical	3	345	junction_1	183.88039590995	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTACTGTCCTGTGTCTTT	4	True	NA	27	True	AATAAA	-32	NA	10486103	10493775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_10486351_10486538_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239
transcript_30385.nnic	chr15	+	1616	6	NNC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	-7	3	intron_retention	FALSE	canonical	0	0	junction_5	316.528039832177	503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCCGACTTACTGTACTG	-3	True	NA	15	True	AATAAA	-20	NA	10486096	10493763	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239_10493477_10493557
transcript_30402.known	chr15	+	810	4	FSM	ENSMUSG00000022248.15	ENSMUST00000168408.2	810	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	392.049600036639	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTTTCACGAGACAGGG	461	False	NA	NA	False	NA	NA	NA	10486560	10493449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_10486803_10490341_10490601_10492850_10492950_10493239
transcript_30404.known	chr15	-	4759	18	FSM	ENSMUSG00000022246.15	ENSMUST00000169385.3	4759	18	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_8	29.2639816641101	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATTTGTGGTGTTTGTGA	8897	False	NA	-3	True	AATAAA	-26	NA	10714653	10569054	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_10570861_10571579_10571646_10572416_10572567_10574397_10575931_10578453_10578573_10583867_10583923_10587923_10588011_10589344_10589432_10591672_10591702_10592157_10592337_10593085_10593193_10595071_10595143_10595920_10595979_10599805_10599871_10610090_10610180_10633221_10633353_10690456_10690539_10714608
transcript_30407.nic	chr15	-	663	3	ISM	ENSMUSG00000022246.15	ENSMUST00000226530.2	2375	6	-186	38987	-186	0	5prime_fragment	FALSE	canonical	3	145	junction_2	4	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAACAA	8654	False	NA	NA	False	NA	NA	NA	10714896	10633059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_10633353_10690456_10690539_10714608
transcript_30408.nnic	chr15	-	607	2	NNC	ENSMUSG00000022246.15	novel	594	3	NA	NA	26397	17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTAGTGCTGACTTCTTC	NA	False	NA	NA	False	NA	NA	NA	10687229	10633042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_10633353_10686932
transcript_30411.known	chr15	+	2577	5	FSM	ENSMUSG00000022244.8	ENSMUST00000070877.7	2577	5	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	9.36416040016402	577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGAATCACCAATGCCAC	49	False	NA	NA	False	AATAAA	-17	NA	10981841	10996712	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_10982140_10983435_10983580_10984771_10984933_10988844_10989032_10994925
transcript_30416.nnic	chr15	+	1436	4	NIC	ENSMUSG00000022244.8	novel	2577	5	NA	NA	-39	600	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	57.3313953160822	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGCAGTGGTTTTAAGTT	10	True	NA	35	True	AATAAA	-45	NA	10981802	10995693	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_+_10982140_10983435_10983580_10988844_10989032_10994925
transcript_30421.known	chr15	-	4005	19	FSM	ENSMUSG00000022241.7	ENSMUST00000022849.7	4005	19	0	0	0	0	multi-exon	FALSE	canonical	3	2899	junction_10	215.823487548918	1767	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGTGACTCCAGAGCACA	NA	False	NA	NA	False	AATAAA	-27	NA	11399751	11382386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
transcript_30439.known	chr15	-	312	3	FSM	ENSMUSG00000115076.2	ENSMUST00000228516.2	312	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAACACCTTCTAAGATAA	NA	False	NA	NA	False	NA	NA	NA	11630826	11625182	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_11625347_11627138_11627182_11630721
transcript_30440.known	chr15	-	306	3	FSM	ENSMUSG00000115076.2	ENSMUST00000228923.2	306	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCTGGCTCAAAGAAATAAA	NA	False	NA	NA	False	NA	NA	NA	11630832	11626488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_11626641_11627138_11627182_11630721
transcript_30443.known	chr15	-	6892	8	FSM	ENSMUSG00000022206.8	ENSMUST00000066529.5	6892	8	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	7.24498419034627	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTTCCTGTCTATAATTC	1480	False	NA	-1	True	ATTAAA	-18	NA	11905725	11839981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_11845375_11846383_11846472_11848554_11848691_11851513_11851609_11858702_11858839_11883383_11883551_11895767_11895891_11904971
transcript_30449.known	chr15	+	751	2	FSM	ENSMUSG00000115240.2	ENSMUST00000227557.2	751	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAAATGTTCTTTCATTTG	NA	False	NA	NA	False	ATTAAA	-17	NA	11906604	11907476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_11907075_11907195
transcript_30473.known	chr15	-	3372	5	FSM	ENSMUSG00000022205.16	ENSMUST00000022816.15	3372	5	0	0	0	0	multi-exon	FALSE	canonical	3	7728	junction_1	236.548620794965	39199	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCCTTTGTGTTATCCCA	809	False	NA	NA	False	AATAAA	-11	NA	11996144	11981424	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_11984384_11986541_11986651_11991044_11991168_11993874_11993948_11996036
transcript_30479.known	chr15	+	4850	20	FSM	ENSMUSG00000022201.17	ENSMUST00000122941.8	4850	20	0	0	0	0	multi-exon	TRUE	canonical	1	184	junction_8	102.146464828737	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCTGTCTATATTATCTG	40	False	NA	NA	False	AATACA	-17	NA	12117916	12185769	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_12118034_12118324_12118425_12136481_12136765_12137990_12138136_12140519_12140739_12146234_12146483_12149613_12149806_12150258_12150551_12152886_12153084_12154531_12154652_12156348_12156495_12159684_12159848_12160570_12160777_12162199_12162351_12166230_12166373_12170901_12171000_12171844_12171941_12180707_12180820_12180928_12181027_12184044
transcript_30483.known	chr15	+	1115	7	FSM	ENSMUSG00000022201.17	ENSMUST00000128475.9	1115	7	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_4	46.1483116339771	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAGAAACATAAAAAAAAGG	60	False	NA	NA	False	TATAAA	-15	NA	12117936	12149636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_12118034_12118324_12118425_12136481_12136765_12137990_12138136_12140519_12140739_12146234_12146483_12149613
transcript_30485.known	chr15	+	513	3	FSM	ENSMUSG00000022201.17	ENSMUST00000124621.2	513	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	305.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATTTTCCTAGCTGTAA	75	False	NA	NA	False	ACTAAA	-25	NA	12117951	12122423	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_12118034_12118324_12118425_12122092
transcript_30487.known	chr15	+	4359	16	FSM	ENSMUSG00000039458.16	ENSMUST00000174418.8	4359	16	0	0	0	0	multi-exon	TRUE	canonical	3	72	junction_5	54.8326747680817	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTATTAGACTGAGTCAG	48	False	NA	NA	False	ATTAAA	-21	NA	12205189	12272205	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_12205366_12230359_12230421_12232841_12232988_12233939_12234013_12236103_12236207_12238014_12238106_12245069_12245200_12251438_12251515_12257712_12257820_12258503_12258629_12259653_12259733_12261926_12261998_12263810_12263984_12265629_12265798_12266692_12266855_12269587
transcript_30488.known	chr15	+	2652	4	FSM	ENSMUSG00000022200.9	ENSMUST00000059680.7	2652	4	0	0	0	0	multi-exon	TRUE	canonical	3	392	junction_2	32.4174164437712	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCAGAGCAAGCATGCCAT	-5	True	NA	18	True	AATAAA	-26	NA	12321535	12351351	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_12322043_12339713_12339846_12343122_12343238_12349453
transcript_30489.known	chr15	-	3966	9	FSM	ENSMUSG00000022195.8	ENSMUST00000057256.5	3966	9	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_8	28.8809517675578	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCAAAAACAAAAAAGGAAAG	NA	False	NA	NA	False	NA	NA	NA	12824735	12808262	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_12810931_12812018_12812159_12814276_12814344_12815935_12816058_12816405_12816469_12817943_12818371_12821489_12821640_12823646_12823793_12824552
transcript_30492.known	chr15	-	3156	8	FSM	ENSMUSG00000022195.8	ENSMUST00000228177.2	3156	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_6	133.553321920192	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATGAAATTAAATCCTGT	NA	False	NA	NA	False	AATAAA	-14	NA	12824697	12808731	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_12810931_12812018_12812159_12814276_12814344_12815935_12816058_12816405_12816469_12817943_12818214_12821489_12821640_12824552
transcript_30493.known	chr15	-	3206	8	FSM	ENSMUSG00000022195.8	ENSMUST00000227299.2	3206	8	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_7	97.0238767163074	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCCTGATAATCAAAAGATT	NA	False	NA	-12	True	AATAAA	-19	NA	12824716	12808857	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_12810931_12812018_12812159_12814276_12814344_12815935_12816058_12816405_12816469_12817943_12818371_12821489_12821640_12824552
transcript_30494.nic	chr15	-	1190	6	ISM	ENSMUSG00000022195.8	ENSMUST00000057256.5	3966	9	-25	7599	-25	-2616	5prime_fragment	FALSE	canonical	3	264	junction_5	27.5492286643383	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCTCTGTGAATGAATGA	NA	False	NA	NA	False	AATACA	-21	NA	12824760	12815861	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_12816058_12816405_12816469_12817943_12818371_12821489_12821640_12823646_12823793_12824552
transcript_30497.known	chr15	-	1971	3	FSM	ENSMUSG00000022195.8	ENSMUST00000228888.2	1971	3	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_2	25	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAATAGAAAAGGTGAAAT	NA	False	NA	NA	False	NA	NA	NA	12824727	12819989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_12821640_12823646_12823793_12824552
transcript_305.known	SIRV4	-	592	4	FSM	SIRV4A	SIRV404	592	4	0	0	0	0	multi-exon	FALSE	canonical	3	669	junction_3	2787.93595494747	19328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGATATTTAGAGCGTA	NA	False	NA	NA	False	NA	NA	NA	14623	8322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV4_-_8373_8629_8991_13672_13823_14592
transcript_30500.nnic	chr15	-	696	3	NNC	ENSMUSG00000022195.8	novel	3966	9	NA	NA	-25	-2471	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	123.5	65	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGTTTTCTTACTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	12824760	12822460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_12822803_12823646_12823793_12824552
transcript_30501.nic	chr15	-	723	2	ISM	ENSMUSG00000022195.8	ENSMUST00000227299.2	3206	8	-13	12236	-2	-1104	5prime_fragment	FALSE	canonical	3	60	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAAGCTTACGTGGGAGT	NA	False	NA	NA	False	NA	NA	NA	12824729	12821093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_12821640_12824552
transcript_30502.known	chr15	+	4519	35	FSM	ENSMUSG00000022191.17	ENSMUST00000090292.13	4519	35	0	0	0	0	multi-exon	FALSE	canonical	3	495	junction_3	95.4793814587056	467	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTCTTTGCTACAGAGTAT	53	False	NA	30	True	ATTAAA	-20	NA	12824948	12935377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_12825025_12826150_12826254_12827312_12827379_12833914_12834749_12837368_12837462_12842142_12842254_12842385_12842618_12846153_12846296_12848138_12848294_12851881_12851963_12859458_12859546_12861763_12861851_12865112_12865185_12866648_12866731_12867681_12867757_12878743_12878914_12881708_12881834_12883251_12883352_12885073_12885182_12889704_12889813_12890119_12890259_12890572_12890634_12901188_12901249_12902670_12902771_12905684_12905788_12907409_12907481_12912596_12912642_12913984_12914143_12915424_12915531_12924141_12924284_12926076_12926160_12926291_12926396_12928948_12929042_12929750_12929798_12935077
transcript_30512.known	chr15	-	93	1	FSM	ENSMUSG00000115358.2	ENSMUST00000227289.2	93	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGTTTTATGACAAAAT	NA	False	NA	-56	True	NA	NA	NA	18385527	18385434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_18385400_18385500
transcript_30513.known	chr15	-	1537	1	FSM	ENSMUSG00000047565.6	ENSMUST00000052910.6	1537	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	368	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTTCACAAATTTGCCTT	NA	False	NA	NA	False	NA	NA	NA	20666836	20665299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_20665300_20666800
transcript_30514.known	chr15	+	1380	1	FSM	ENSMUSG00000115708.2	ENSMUST00000227154.2	1380	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-18	NA	21958517	21959897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_21958500_21959900
transcript_30518.known	chr15	-	1855	2	FSM	ENSMUSG00000045763.9	ENSMUST00000058845.9	1855	2	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	0	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAACTGGCTTTTGGCTTGA	NA	False	NA	NA	False	AATAAA	-20	NA	25413850	25363362	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_25365005_25413637
transcript_30520.known	chr15	+	1030	7	FSM	ENSMUSG00000022272.18	ENSMUST00000125667.3	1030	7	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_1	101.286173236473	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAGGGAGAACAAGCAGGT	-10	True	NA	NA	False	NA	NA	NA	25774072	25781143	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_25774395_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059
transcript_30522.known	chr15	+	881	5	FSM	ENSMUSG00000022272.18	ENSMUST00000135173.8	881	5	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	256.595498791386	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCGGGAGGAAGAGAAGAAGA	186	False	NA	4	True	NA	NA	NA	25753064	25779860	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_25753407_25776106_25776232_25776403_25776519_25778166_25778274_25779668
transcript_30527.known	chr15	+	970	3	FSM	ENSMUSG00000022272.18	ENSMUST00000127486.2	970	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	11.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAAAAAAAAGATTCTCTT	61	False	NA	NA	False	AATAGA	-3	NA	25622634	25702036	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_25623117_25666511_25666611_25701647
transcript_30528.known	chr15	+	3248	9	FSM	ENSMUSG00000022270.17	ENSMUST00000022881.15	3248	9	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	4.98591766879478	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTTTTATGTGTATGCC	9	False	NA	21	True	TATAAA	-17	NA	25843265	25973773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_25843699_25889566_25889674_25895198_25895230_25964309_25964437_25966718_25966804_25968492_25968631_25969881_25969947_25970183_25970311_25971638
transcript_30534.known	chr15	+	1365	3	FSM	ENSMUSG00000022269.14	ENSMUST00000152841.2	1365	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAGAGGCTCCTT	102	False	NA	NA	False	AATACA	-12	NA	26309149	26409662	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_26309879_26311056_26311213_26409182
transcript_30535.known	chr15	+	883	1	FSM	ENSMUSG00000090544.4	ENSMUST00000169678.4	883	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGTTTTTATACGAGAA	116	False	NA	NA	False	NA	NA	NA	27025413	27026296	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_27025400_27026300
transcript_30537.nnic	chr15	-	685	4	NNC	ENSMUSG00000115138.2	novel	1237	5	NA	NA	479	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.471404520791032	23	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGACTTGGCTCCGTTCTT	NA	False	NA	NA	False	NA	NA	NA	27463056	27459914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_27460254_27461348_27461420_27461806_27461958_27462932
transcript_30541.nnic	chr15	-	551	3	NIC	ENSMUSG00000115138.2	novel	1237	5	NA	NA	484	5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGACTTGGCTCCGTTCT	NA	False	NA	NA	False	NA	NA	NA	27463051	27459915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_27460277_27461348_27461420_27462932
transcript_30543.known	chr15	+	1555	4	FSM	ENSMUSG00000039168.16	ENSMUST00000044524.16	1555	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	1.69967317119759	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCTCTTACGGTTCAG	-9	True	NA	21	True	AATAAA	-21	NA	31224459	31274487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_31224730_31235918_31236016_31272534_31272578_31273342
transcript_30545.known	chr15	-	7466	4	FSM	ENSMUSG00000022237.18	ENSMUST00000123325.9	7466	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	1.88561808316413	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGGTATTTTCCTGTCAT	NA	False	NA	NA	False	AATAAA	-37	NA	31367872	31291623	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_31298131_31305137_31305279_31325231_31325362_31367184
transcript_30546.nic	chr15	-	1735	3	ISM	ENSMUSG00000022237.18	ENSMUST00000110410.10	2070	4	42185	0	-109	0	3prime_fragment	FALSE	canonical	2	3	junction_2	2	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAGAAGGGATTCTCCCC	NA	False	NA	NA	False	AATAAA	-24	NA	31325504	31296809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_31298131_31305137_31305279_31325231
transcript_30547.known	chr15	-	2070	4	FSM	ENSMUSG00000022237.18	ENSMUST00000110410.10	2070	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	2.86744175568088	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAGAAGGGATTCTCCCC	72	False	NA	NA	False	AATAAA	-24	NA	31367689	31296809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_31298131_31305137_31305279_31325231_31325362_31367211
transcript_30548.known	chr15	-	1641	2	FSM	ENSMUSG00000022237.18	ENSMUST00000076942.5	1641	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTAGTGTGCGCCTGTGC	47	False	NA	NA	False	NA	NA	NA	31367714	31324091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_31325203_31367184
transcript_30549.known	chr15	-	957	5	FSM	ENSMUSG00000022236.11	ENSMUST00000110408.3	957	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.6583123951777	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTGAGTTTTTCTCAGA	NA	False	NA	NA	False	AATACA	-17	NA	31453883	31441356	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_31441527_31443437_31443614_31449109_31449272_31451227_31451352_31453558
transcript_3055.known	chr1	+	776	6	FSM	ENSMUSG00000094638.2	ENSMUST00000135197.2	776	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	640.065121686848	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCCACTTTGCCATCTAC	7486	False	NA	NA	False	NA	NA	NA	86061358	86090510	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_86061507_86064684_86064839_86082432_86082566_86084639_86084728_86087716_86087846_86090386
transcript_30551.known	chr15	-	6260	26	FSM	ENSMUSG00000039100.11	ENSMUST00000090227.6	6260	26	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_10	16.0775122453693	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTTTGGCTGTGTGTTT	NA	False	NA	NA	False	AATAAA	-25	NA	31531199	31456036	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_31459426_31462087_31462224_31465399_31465533_31467835_31467926_31469688_31469824_31471762_31471945_31475891_31475962_31478440_31478643_31480430_31480569_31482643_31482745_31482949_31483070_31485091_31485227_31486069_31486145_31486227_31486297_31486500_31486582_31488937_31488997_31490721_31490774_31492884_31492918_31494216_31494279_31496149_31496340_31498719_31498889_31501061_31501135_31502865_31503010_31505830_31505905_31509871_31509969_31530948
transcript_30552.known	chr15	+	1155	6	FSM	ENSMUSG00000022235.16	ENSMUST00000070918.14	1155	6	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	2.60768096208106	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATGCGTAGCTTCACTTT	55	False	NA	NA	False	AATAAA	-18	NA	31568943	31590265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_31569086_31581985_31582220_31584110_31584219_31585440_31585584_31588313_31588406_31589829
transcript_3056.known	chr1	+	2582	2	FSM	ENSMUSG00000079445.4	ENSMUST00000113306.4	2582	2	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_1	0	211	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGCTGCTTCCTTGGTCTT	NA	False	NA	36	True	AATAAA	-27	NA	86230955	86235027	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_86231277_86232766
transcript_30573.known	chr15	-	1853	11	FSM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	0	0	0	0	multi-exon	FALSE	canonical	3	5476	junction_6	308.656459514458	10785	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGAGCTTGATAGAGGAT	NA	False	NA	-3	True	AATAAA	-30	NA	31601950	31590945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
transcript_30574.known	chr15	-	845	5	FSM	ENSMUSG00000022234.16	ENSMUST00000161266.2	845	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_4	2532.72531080652	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGCCGAAAGTGAGTGCC	114	False	NA	NA	False	CATAAA	-36	NA	31601685	31594490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601447
transcript_30576.known	chr15	+	2364	6	FSM	ENSMUSG00000039065.12	ENSMUST00000161061.3	2364	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.3490087672889	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTCTCCTGGCCTCGGGCT	115	False	NA	NA	False	ATTAAA	-26	NA	31602263	31618755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_31602296_31603594_31603721_31606056_31606335_31608241_31608380_31609711_31609763_31617016
transcript_30577.known	chr15	+	1164	5	FSM	ENSMUSG00000039065.12	ENSMUST00000042702.7	1164	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	6.68954408012983	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAACCGTGACAAGGAGTG	115	False	NA	27	True	ATTAAA	-27	NA	31602263	31617681	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_31602296_31606056_31606335_31608241_31608380_31609711_31609763_31617016
transcript_30578.nnic	chr15	+	1094	4	NIC	ENSMUSG00000039065.12	novel	1164	5	NA	NA	6	-13	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	7.76029781788188	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCATTTAGCTTTATAACC	121	False	NA	14	True	ATTAAA	-14	NA	31602269	31617668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_+_31602296_31606056_31606335_31608241_31608380_31617016
transcript_30579.known	chr15	+	4655	2	FSM	ENSMUSG00000039065.12	ENSMUST00000160146.2	4655	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGCGAAAAAACAAGCTCT	NA	False	NA	NA	False	NA	NA	NA	31601997	31621373	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_31602296_31617016
transcript_30580.known	chr15	-	1486	2	FSM	ENSMUSG00000096956.3	ENSMUST00000181536.3	1486	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGTTTGGCTCATTGTGTG	3844	False	NA	NA	False	ATTAAA	-20	NA	32244808	32240710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_32241916_32244527
transcript_30582.known	chr15	+	3527	5	FSM	ENSMUSG00000022261.7	ENSMUST00000022871.7	3527	5	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	11.0227038425243	163	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCTGTGTGAGTATTGCT	26	False	NA	NA	False	ATTAAA	-44	NA	32920868	33035081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_32921452_33017247_33017360_33023794_33023932_33028192_33028329_33032522
transcript_30584.known	chr15	+	1923	8	FSM	ENSMUSG00000039007.11	ENSMUST00000042167.10	1923	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.04978131833565	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTTGTGGTTTATATTA	20	True	NA	NA	False	ATTAAA	-16	NA	33083274	33594698	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_33083469_33212961_33213410_33250071_33250280_33302485_33302694_33381481_33381594_33466771_33466864_33497308_33497511_33594239
transcript_30585.known	chr15	+	2906	1	FSM	ENSMUSG00000115318.2	ENSMUST00000227474.2	2906	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGAAAAGAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33831593	33834499	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_33831600_33834500
transcript_30586.known	chr15	+	6919	12	FSM	ENSMUSG00000022255.17	ENSMUST00000022865.17	6919	12	0	0	0	0	multi-exon	TRUE	canonical	3	477	junction_6	48.3699585751527	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGCCTGGCTTGTGTTTT	52	False	NA	1	True	NA	NA	NA	34082864	34145770	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_34083560_34099629_34099732_34114169_34114255_34114944_34115122_34116456_34116523_34118025_34118257_34123813_34123913_34131309_34131435_34134436_34134545_34136832_34136974_34139886_34140044_34140837
transcript_30593.nic	chr15	+	1679	9	ISM	ENSMUSG00000022255.17	ENSMUST00000022865.17	6919	12	-45	11280	-20	0	5prime_fragment	FALSE	canonical	3	477	junction_6	54.812749429307	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAAAGAAGAAAAA	7	True	NA	NA	False	GATAAA	-37	NA	34082819	34134490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_+_34083560_34099629_34099732_34114169_34114255_34114944_34115122_34116456_34116523_34118025_34118257_34123813_34123913_34131309_34131435_34134436
transcript_30597.known	chr15	+	4582	2	FSM	ENSMUSG00000022255.17	ENSMUST00000172082.2	4582	2	0	0	0	0	multi-exon	FALSE	canonical	3	602	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAAAAAAATCT	27	False	NA	NA	False	NA	NA	NA	34082839	34103491	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_34083560_34099629
transcript_30598.known	chr15	+	1662	6	FSM	ENSMUSG00000022257.5	ENSMUST00000226437.2	1662	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	166.723003811712	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAACAGTCGTGGCTCC	111	False	NA	NA	False	ATTAAA	-15	NA	34238294	34284441	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_34238569_34272489_34272564_34273373_34273497_34276281_34276381_34277577_34277674_34283445
transcript_30599.known	chr15	+	1902	7	FSM	ENSMUSG00000022257.5	ENSMUST00000022867.5	1902	7	0	0	0	0	multi-exon	FALSE	canonical	3	358	junction_4	34.9698282650757	1430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCGTGGCTCCGCTGACT	31	True	NA	NA	False	ATTAAA	-22	NA	34238173	34284448	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_34238569_34258826_34258939_34272489_34272564_34273373_34273497_34276281_34276381_34277577_34277674_34283445
transcript_30600.known	chr15	+	3252	3	FSM	ENSMUSG00000022324.16	ENSMUST00000226766.2	3252	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTTGTCAGCTTCTTCG	50	False	NA	NA	False	ATTAAA	-22	NA	34306825	34347994	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_34307055_34316636_34316802_34345136
transcript_30607.known	chr15	-	886	5	FSM	ENSMUSG00000058600.14	ENSMUST00000079735.12	886	5	0	0	0	0	multi-exon	FALSE	canonical	3	3551	junction_4	804.634194836387	39537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	NA	False	NA	-20	True	AATAAA	-27	NA	34443786	34440650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_34440751_34441377_34441509_34442780_34442927_34443170_34443224_34443330
transcript_30608.known	chr15	-	570	4	FSM	ENSMUSG00000058600.14	ENSMUST00000009039.6	570	4	0	0	0	0	multi-exon	FALSE	canonical	3	4307	junction_1	558.07426825548	10639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGGTGTCTGTTTG	361	False	NA	-25	True	AATAAA	-22	NA	34443368	34440655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_34440751_34441377_34441509_34442780_34442927_34443170
transcript_30609.known	chr15	-	505	3	FSM	ENSMUSG00000058600.14	ENSMUST00000142643.2	505	3	0	0	0	0	multi-exon	FALSE	canonical	3	4307	junction_1	417	728	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	675	False	NA	-20	True	AATAAA	-27	NA	34443054	34440650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_34440751_34441377_34441509_34442780
transcript_30610.known	chr15	-	2412	2	FSM	ENSMUSG00000058600.14	ENSMUST00000135417.2	2412	2	0	0	0	0	multi-exon	FALSE	canonical	3	5662	junction_1	0	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	423	False	NA	-20	True	AATAAA	-27	NA	34443306	34440650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_34442927_34443170
transcript_30611.known	chr15	-	388	3	FSM	ENSMUSG00000058600.14	ENSMUST00000140527.2	388	3	0	0	0	0	multi-exon	FALSE	canonical	3	3551	junction_2	1055.5	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTTTTTGTAAATGTACC	324	False	NA	NA	False	NA	NA	NA	34443405	34442666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_34442927_34443170_34443224_34443330
transcript_30613.known	chr15	-	1004	6	FSM	ENSMUSG00000022323.12	ENSMUST00000022946.6	1004	6	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_4	17.7245592328836	1246	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTTTTAATTTTGTTC	NA	False	NA	-10	True	AATAAA	-21	NA	34495401	34484166	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_34484682_34485745_34485802_34486756_34486826_34487887_34487943_34488719_34488826_34495198
transcript_30619.known	chr15	+	3275	16	FSM	ENSMUSG00000022325.15	ENSMUST00000079028.6	3275	16	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	10.1552394796425	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCATGTGGATGATGATTT	94	False	NA	-2	True	ATTAAA	-8	NA	34495468	34530783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_34495562_34499434_34499579_34502456_34502625_34505104_34505281_34506564_34506814_34508265_34508354_34508749_34508938_34509908_34510166_34510477_34510572_34512059_34512172_34512877_34512998_34515987_34516104_34517972_34518165_34526308_34526464_34529028_34529377_34530008
transcript_30624.known	chr15	+	3395	17	FSM	ENSMUSG00000022325.15	ENSMUST00000052290.14	3395	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	20.2638841291594	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGATTTGTTTTTAATCT	75	False	NA	9	True	ATTAAA	-19	NA	34495449	34530794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_34495562_34499434_34499579_34502456_34502625_34505104_34505281_34506564_34506814_34508265_34508354_34508749_34508938_34509908_34510166_34510477_34510572_34512059_34512172_34512877_34512998_34513235_34513326_34515987_34516104_34517972_34518165_34526308_34526464_34529028_34529377_34530008
transcript_30625.known	chr15	-	4331	11	FSM	ENSMUSG00000038879.9	ENSMUST00000040791.9	4331	11	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	2.40831891575846	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGCAAAGATTCAGAATGT	NA	False	NA	NA	False	AATAAA	-15	NA	34679358	34572944	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_34575718_34577715_34577811_34578853_34578918_34582866_34582956_34584775_34584912_34600160_34600258_34609318_34609441_34625117_34625178_34648811_34648984_34650527_34650597_34678704
transcript_30631.known	chr15	-	3243	5	FSM	ENSMUSG00000038879.9	ENSMUST00000227336.2	3243	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.11247489949718	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACGAAAAAAGAAAGAAAGA	4	True	NA	NA	False	NA	NA	NA	34678880	34621899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_34624666_34625117_34625178_34648811_34648984_34650527_34650597_34678704
transcript_30634.known	chr15	-	2914	11	FSM	ENSMUSG00000022329.16	ENSMUST00000018476.14	2914	11	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_2	35.5343495789637	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCGTTGTTGTTATTGT	NA	False	NA	2	True	AATAAA	-21	NA	35155952	34875641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_34876967_34945151_34945328_34959011_34959223_34999976_35000103_35008306_35008445_35072575_35072744_35073202_35073368_35099579_35099695_35114674_35114804_35115710_35115792_35155672
transcript_30636.nnic	chr15	-	648	4	NNC	ENSMUSG00000022329.16	novel	2914	11	NA	NA	10	-41517	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	124.022399410572	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAAGATTTCATTTTTTTG	NA	False	NA	NA	False	AATATA	-25	NA	35155886	35114141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_35114366_35114674_35114804_35115710_35115792_35155672
transcript_30638.nic	chr15	+	1855	4	NIC	ENSMUSG00000022330.6	novel	1724	4	NA	NA	-50	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_3	14.8548533034381	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTTCTTGAGATTCATC	67	False	NA	12	True	AATAAA	-15	NA	35296193	35303450	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_+_35296614_35300334_35301102_35302057_35302158_35302882
transcript_30639.known	chr15	+	1724	4	FSM	ENSMUSG00000022330.6	ENSMUST00000022952.6	1724	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	10.1434160364686	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTTCTTGAGATTCATCT	117	False	NA	13	True	AATAAA	-16	NA	35296243	35303451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_35296614_35300334_35301102_35302057_35302158_35302964
transcript_30641.known	chr15	+	579	3	FSM	ENSMUSG00000022330.6	ENSMUST00000228684.2	579	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	9.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCGGCCCCGGCTCCCTTCC	130	False	NA	NA	False	NA	NA	NA	35296256	35303086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_35296614_35302057_35302158_35302964
transcript_30644.known	chr15	+	13757	62	FSM	ENSMUSG00000037646.11	ENSMUST00000048646.9	13757	62	0	0	0	0	multi-exon	TRUE	canonical	3	23	junction_44	12.5602231076886	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGGTGTGCTGTGAGTTT	-26	True	NA	NA	False	AATAAA	-28	NA	35371305	35931375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_35371924_35372078_35372254_35379034_35379179_35417656_35417778_35422453_35422622_35423261_35423444_35430255_35430431_35438858_35439125_35445715_35445812_35446183_35446307_35446768_35446907_35447830_35447919_35448675_35448868_35452243_35452414_35455102_35455298_35456760_35456886_35472028_35472211_35533441_35533577_35534332_35534507_35572205_35572316_35576524_35576673_35597540_35597669_35607275_35607511_35617743_35617965_35623747_35623952_35639998_35640171_35640675_35640791_35642543_35642611_35646118_35646528_35652400_35652513_35668846_35669051_35671444_35671572_35674954_35675099_35709271_35709960_35745792_35745931_35770601_35771010_35792184_35792388_35793979_35794185_35794450_35794636_35834329_35834527_35840020_35840203_35841394_35841745_35846991_35847154_35869432_35869589_35875707_35875972_35876525_35876610_35876787_35876964_35877642_35877814_35878788_35878991_35879914_35880104_35883034_35883182_35884652_35884937_35887022_35887151_35887328_35887529_35905417_35905537_35910292_35911096_35914919_35915097_35917192_35917364_35923332_35923510_35925449_35925553_35926186_35926437_35930000
transcript_30649.known	chr15	-	606	4	FSM	ENSMUSG00000014313.16	ENSMUST00000156915.3	606	4	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_3	4177.00884472237	699	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAGTAATTATATGGACA	39	False	NA	-25	True	NA	NA	NA	35938155	35932145	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_35932244_35935430_35935560_35937300_35937431_35937906
transcript_30653.known	chr15	-	503	4	FSM	ENSMUSG00000014313.16	ENSMUST00000014457.15	503	4	0	0	0	0	multi-exon	FALSE	canonical	3	8539	junction_3	472.446822404384	130658	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTGCTTGGTTATTAAT	NA	False	NA	-1	True	AATAAA	-22	NA	35938392	35932121	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_35932244_35935430_35935560_35937300_35937431_35938270
transcript_30654.known	chr15	-	738	3	FSM	ENSMUSG00000014313.16	ENSMUST00000153512.2	738	3	0	0	0	0	multi-exon	FALSE	canonical	3	8821	junction_1	415.5	19154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTCTTTGCTTGGTTAT	403	False	NA	-5	True	AATAAA	-18	NA	35937791	35932125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_35932244_35935430_35935560_35937300
transcript_30655.known	chr15	-	3038	2	FSM	ENSMUSG00000014313.16	ENSMUST00000127999.2	3038	2	0	0	0	0	multi-exon	FALSE	canonical	3	8821	junction_1	0	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTAAGTCTTTGCTTGGT	NA	False	NA	-8	True	AATAAA	-15	NA	35938353	35932128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_35932244_35935430
transcript_30658.known	chr15	+	489	4	FSM	ENSMUSG00000045996.13	ENSMUST00000180159.8	489	4	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_3	234.864973028239	5239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCATTTCTATTCAATGT	109	False	NA	NA	False	ATTAAA	-12	NA	36174155	36177153	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_36174228_36175132_36175203_36175529_36175623_36176899
transcript_30660.known	chr15	+	601	4	FSM	ENSMUSG00000045996.13	ENSMUST00000057177.7	601	4	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_1	282.916948944385	2189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTCTATTCAATGTCTT	132	False	NA	NA	False	ATTAAA	-15	NA	36174178	36177156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_36174360_36175132_36175203_36175529_36175623_36176899
transcript_30671.known	chr15	+	2388	9	FSM	ENSMUSG00000037617.13	ENSMUST00000227582.2	2388	9	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_4	7	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTACTGTGAGTATGCCTG	72	False	NA	NA	False	AATAAA	-14	NA	36210607	36235756	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_36210968_36211245_36211346_36216312_36216466_36221551_36221713_36224254_36224388_36227281_36227409_36233348_36233490_36234446_36234816_36234912
transcript_30674.known	chr15	-	4277	10	FSM	ENSMUSG00000022280.10	ENSMUST00000022890.10	4277	10	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_2	15.6946165182307	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTGTGTGCCCAGGAAT	NA	False	NA	1	True	AATAAA	-17	NA	36283293	36240078	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_36242212_36244232_36244377_36245561_36245776_36247267_36247430_36247896_36248012_36253146_36253310_36254528_36254674_36260160_36260370_36265421_36266178_36283057
transcript_30676.known	chr15	-	1136	2	FSM	ENSMUSG00000022280.10	ENSMUST00000227735.2	1136	2	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCTGTTTTTATATTGTC	NA	False	NA	NA	False	ATTAAA	-13	NA	36283280	36265264	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_36266178_36283057
transcript_30678.known	chr15	-	2509	5	FSM	ENSMUSG00000048307.9	ENSMUST00000057486.9	2509	5	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_4	35.6195171219375	425	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCATCGGCCATTTTCTTA	NA	False	NA	NA	False	AATAAA	-18	NA	36496966	36477813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_36479620_36484126_36484286_36485940_36486274_36496022_36496140_36496872
transcript_30679.nnic	chr15	-	2247	15	NNC	ENSMUSG00000013611.15	novel	2696	14	NA	NA	-4610	-243	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_14	7.66418918858136	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCATCTCGCCAATTTGA	NA	False	NA	NA	False	NA	NA	NA	36560328	36504800	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_36505617_36507844_36507902_36517744_36517823_36523588_36523703_36525719_36525924_36527830_36527924_36530919_36530990_36534560_36534649_36537653_36537745_36539442_36539554_36545694_36545760_36546925_36547041_36555404_36555480_36556627_36556725_36560155
transcript_30681.known	chr15	-	2344	14	FSM	ENSMUSG00000013611.15	ENSMUST00000161202.8	2344	14	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_13	9.09385643454255	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCGATGAATACAGAGTTTG	NA	False	NA	NA	False	AATAAA	-8	NA	36555713	36504557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_36505620_36507844_36507902_36517744_36517823_36523588_36523703_36525719_36525924_36527830_36527924_36530919_36530990_36534560_36534649_36537653_36537745_36539442_36539554_36545694_36545760_36546925_36547041_36555404_36555480_36555592
transcript_30694.known	chr15	-	2817	15	FSM	ENSMUSG00000022283.16	ENSMUST00000001809.15	2817	15	0	0	0	0	multi-exon	FALSE	canonical	3	5069	junction_10	538.55476006794	5965	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGGTTATGCTTTTATTT	377	False	NA	-7	True	AATAAA	-16	NA	36609217	36595904	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
transcript_30695.known	chr15	-	725	5	FSM	ENSMUSG00000022283.16	ENSMUST00000146577.8	725	5	0	0	0	0	multi-exon	FALSE	canonical	3	5911	junction_3	364.961984321655	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATGAAAAAAAACATTGCAAA	10029	False	NA	NA	False	AAGAAA	-32	NA	36598556	36596267	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216
transcript_30696.known	chr15	-	3288	7	FSM	ENSMUSG00000022285.18	ENSMUST00000022894.14	3288	7	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_6	1526.66484716049	3973	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGAGTCTCAGTGGTGA	NA	False	NA	-39	True	NA	NA	NA	36794782	36771013	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722_36793920_36794388
transcript_30697.known	chr15	-	2285	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110361.8	2285	6	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_5	1591.90916826306	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAAAAAAAAAACCGCT	NA	False	NA	NA	False	NA	NA	NA	36794775	36771812	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36794388
transcript_30718.known	chr15	-	4417	4	FSM	ENSMUSG00000062397.9	ENSMUST00000078976.9	4417	4	0	0	0	0	multi-exon	TRUE	canonical	3	6501	junction_2	212.49836600679	3803	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTCTGGTCTGTGGTGTTC	155	False	NA	NA	False	NA	NA	NA	37007646	36997270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_37001168_37002082_37002191_37003929_37004067_37007371
transcript_30730.nic	chr15	+	3048	3	ISM	ENSMUSG00000022286.17	ENSMUST00000161933.2	3617	9	29295	0	11961	0	3prime_fragment	FALSE	canonical	3	68	junction_1	5	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCAAACAGCTCTCTAGTA	176	False	NA	13	True	AATAAA	-14	NA	37347941	37363806	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_+_37348099_37358613_37358679_37360980
transcript_30736.known	chr15	+	403	1	FSM	ENSMUSG00000097679.2	ENSMUST00000180745.2	403	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAGAATGCTGGGTTAA	NA	False	NA	NA	False	NA	NA	NA	37868329	37868732	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_37868300_37868700
transcript_30737.known	chr15	-	4561	9	FSM	ENSMUSG00000022292.17	ENSMUST00000022901.16	4561	9	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_4	8.71779788708135	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTAGTTATATCATTTT	7108	False	NA	NA	False	AATAAA	-16	NA	37961347	37924195	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_37927642_37929281_37929396_37931845_37931951_37937459_37937594_37944741_37944837_37945282_37945417_37946978_37947096_37953842_37953999_37961087
transcript_30741.nic	chr15	-	1199	8	ISM	ENSMUSG00000022292.17	ENSMUST00000022901.16	4561	9	-60	5062	-60	-1769	5prime_fragment	FALSE	canonical	3	32	junction_3	9.17850194526229	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTAGTGGTTTTAGTTAC	7048	False	NA	NA	False	AATAAA	-16	NA	37961407	37929257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_37929396_37931845_37931951_37937459_37937594_37944741_37944837_37945282_37945417_37946978_37947096_37953842_37953999_37961087
transcript_30742.nnic	chr15	-	1366	6	Fusion	ENSMUSG00000085442.2_ENSMUSG00000022292.17	novel	690	4	NA	NA	-60	62	multi-exon	FALSE	canonical	2	3	junction_1	21.5165052924493	1788	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAATTG	7048	False	NA	NA	False	AATATA	-28	NA	37961407	37943508	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr15_-_37944053_37944741_37944837_37945282_37945417_37946978_37947096_37953842_37953999_37961087
transcript_30743.nic	chr15	-	2058	5	ISM	ENSMUSG00000022292.17	ENSMUST00000022901.16	4561	9	-60	19310	-60	1786	5prime_fragment	FALSE	canonical	3	46	junction_2	5.71729831301464	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAATTGGGA	7048	False	NA	NA	False	AATATA	-31	NA	37961407	37943505	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_37944837_37945282_37945417_37946978_37947096_37953842_37953999_37961087
transcript_30746.nic	chr15	-	1078	4	ISM	ENSMUSG00000022292.17	ENSMUST00000022901.16	4561	9	19	20657	19	439	5prime_fragment	FALSE	canonical	3	46	junction_1	5.79271573232759	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTGTTTTTATAGGGAA	7127	False	NA	NA	False	AATAAA	-25	NA	37961328	37944852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_37945417_37946978_37947096_37953842_37953999_37961087
transcript_30748.known	chr15	-	466	1	FSM	ENSMUSG00000085442.2	ENSMUST00000148102.2	466	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	484	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAAACTGAGTCCAGATGG	NA	False	NA	NA	False	NA	NA	NA	37944036	37943570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_37943600_37944000
transcript_30749.known	chr15	-	9242	59	FSM	ENSMUSG00000037487.8	ENSMUST00000110336.4	9242	59	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_21	176.45579964147	163	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTTTATGGTGTTATTT	NA	False	NA	-5	True	AATAAA	-31	NA	38079098	37968102	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_37968750_37970505_37970592_37971991_37972137_37973146_37973261_37973546_37973703_37975830_37975916_37976303_37976480_37978265_37978327_37980033_37980165_37981063_37981209_37981709_37981822_37984190_37984435_37986121_37986221_37986322_37986444_37988447_37988669_37989526_37989641_37989723_37989897_37991540_37991615_37992195_37992427_37996798_37997011_37997167_37997437_37997964_37998223_37998530_37998663_38000136_38000249_38000813_38000938_38002460_38002701_38002800_38002962_38004067_38004198_38004289_38004417_38004492_38004612_38004785_38004933_38006111_38006204_38006698_38006848_38008193_38008292_38008903_38009028_38009362_38009459_38009869_38010022_38013685_38013813_38015181_38015393_38018522_38018721_38019131_38019287_38019477_38019590_38019673_38019818_38021806_38021920_38022608_38022719_38024990_38025176_38028876_38028995_38029742_38029898_38030865_38030977_38031065_38031183_38038059_38038254_38040996_38041147_38041691_38041852_38042018_38042209_38045936_38046057_38047278_38047356_38047786_38047869_38048348_38048394_38078607
transcript_30753.nnic	chr15	+	618	3	Genic_Genomic	ENSMUSG00000115771.2	novel	462	1	NA	NA	-53	33476	multi-exon	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTGCTTTTGTTTCATA	183	False	NA	NA	False	AATAAA	-20	NA	38079292	38113283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr15_+_38079488_38079665_38079746_38112940
transcript_30755.known	chr15	+	462	1	FSM	ENSMUSG00000115771.2	ENSMUST00000228698.2	462	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGCCTCTTCTCCAGTCT	236	False	NA	NA	False	NA	NA	NA	38079345	38079807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_38079300_38079800
transcript_30759.known	chr15	-	2144	5	FSM	ENSMUSG00000037465.11	ENSMUST00000227920.2	2144	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	972.418891219211	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACACACACAGAGCTCAGA	NA	False	NA	NA	False	AATAAA	-21	NA	38300950	38291706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_38292469_38296318_38296409_38296858_38297772_38297865_38298097_38300802
transcript_30760.known	chr15	-	3044	4	FSM	ENSMUSG00000037465.11	ENSMUST00000074043.7	3044	4	0	0	0	0	multi-exon	FALSE	canonical	3	2013	junction_1	150.900261394369	567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTGAGTCTGTTGTATG	NA	False	NA	-7	True	AATAAA	-18	NA	38300950	38294656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_38296409_38296858_38297772_38297865_38298097_38300802
transcript_30764.nnic	chr15	+	631	3	NNC	ENSMUSG00000115456.2	novel	527	3	NA	NA	1010	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	2.5	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGCATGGTGCGACTT	NA	False	NA	NA	False	AATAAA	-15	NA	38313546	38343383	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_38313716_38336050_38336148_38343018
transcript_30766.known	chr15	+	527	3	FSM	ENSMUSG00000115456.2	ENSMUST00000227097.2	527	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	7	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGCATGGTGCGACTT	NA	False	NA	NA	False	AATAAA	-15	NA	38312536	38343383	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_38312602_38336050_38336148_38343018
transcript_30774.known	chr15	-	4217	13	FSM	ENSMUSG00000037458.16	ENSMUST00000110329.8	4217	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	173.208669112015	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTTACTTTGATGGCTT	NA	False	NA	-8	True	GATAAA	-16	NA	38519507	38488481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_38490717_38491719_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38507430_38507591_38514716_38514854_38519152
transcript_30779.known	chr15	-	4871	12	FSM	ENSMUSG00000037458.16	ENSMUST00000065308.13	4871	12	0	0	0	0	multi-exon	FALSE	canonical	2	359	junction_2	59.7608180323933	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGGTGGTTGGTGTTTG	NA	False	NA	-1	True	ATTAAA	-15	NA	38519510	38487670	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_38490717_38491719_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38514716_38514854_38519152
transcript_30805.known	chr15	+	2071	13	FSM	ENSMUSG00000022295.9	ENSMUST00000022904.8	2071	13	0	0	0	0	multi-exon	FALSE	canonical	3	1269	junction_12	107.259679697866	1855	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGCTAGTCATTTATTTT	184	False	NA	31	True	AATAAA	-17	NA	38662176	38692690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_38662328_38673100_38673265_38674140_38674209_38676271_38676358_38677762_38677858_38679563_38679656_38681310_38681410_38683184_38683254_38687047_38687141_38687259_38687354_38689368_38689467_38690776_38690904_38691855
transcript_30806.known	chr15	+	1166	4	FSM	ENSMUSG00000054196.8	ENSMUST00000067072.5	1166	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	1.88561808316413	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTTGTTTATTTGTTTGA	NA	False	NA	NA	False	AATAAA	-18	NA	38940326	38950516	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_38940555_38943877_38944100_38947660_38947878_38950017
transcript_30808.nnic	chr15	-	1463	7	NNC	ENSMUSG00000022299.10	novel	5905	7	NA	NA	-25	-1014	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	35.1267546022813	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	38976136	38955639	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_38956051_38960914_38961061_38961523_38961638_38963267_38963429_38965377_38965464_38969226_38969378_38975742
transcript_30809.known	chr15	-	5905	7	FSM	ENSMUSG00000022299.10	ENSMUST00000022908.10	5905	7	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_3	10.9392260542813	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTCAATTTGGCCTTTCA	NA	False	NA	NA	False	AATAAA	-16	NA	38976111	38954625	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_38959504_38960914_38961061_38961523_38961638_38963267_38963429_38965377_38965464_38969226_38969378_38975742
transcript_30810.known	chr15	-	979	7	FSM	ENSMUSG00000022299.10	ENSMUST00000227323.2	979	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	37.5307281511504	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTCATTAGAGTGACTCC	NA	False	NA	NA	False	TTTAAA	-42	NA	38976068	38959463	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_38959504_38960914_38961061_38961523_38961593_38963267_38963429_38965377_38965464_38969226_38969378_38975742
transcript_30816.known	chr15	+	1551	11	FSM	ENSMUSG00000022300.11	ENSMUST00000022909.10	1551	11	0	0	0	0	multi-exon	FALSE	canonical	2	478	junction_2	96.4514903980234	3465	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGCAGTTGTGTGTTTTT	NA	False	NA	NA	False	AATAAA	-27	NA	38976259	39010251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_38976447_38982105_38982306_38982739_38982848_38986607_38986698_38987723_38987880_38991284_38991363_38993610_38993694_39001478_39001644_39007017_39007154_39008485_39008650_39010067
transcript_30819.nnic	chr15	+	1472	6	NNC	ENSMUSG00000037386.17	novel	4800	27	NA	NA	-12119	-55	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	16.4608626748418	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGGACACAGATTAGCTG	NA	False	NA	2	True	ATTAAA	-13	NA	39510842	39545794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_39510965_39538335_39538478_39542643_39542757_39543025_39543128_39544384_39544525_39544941
transcript_30820.nnic	chr15	+	1527	6	NNC	ENSMUSG00000037386.17	novel	4800	27	NA	NA	-12119	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	16.4608626748418	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	NA	False	NA	57	True	TTTAAA	-26	NA	39510842	39545849	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_39510965_39538335_39538478_39542643_39542757_39543025_39543128_39544384_39544525_39544941
transcript_30822.known	chr15	+	3685	6	FSM	ENSMUSG00000037386.17	ENSMUST00000226410.2	3685	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	17.2348484182484	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTTGTTGAGGGTGCTG	NA	False	NA	4	True	AATAAA	-14	NA	39522961	39547768	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_39523323_39538335_39538478_39542643_39542757_39543025_39543128_39544384_39544525_39544941
transcript_30827.nnic	chr15	+	1333	3	Intergenic	novelGene_46	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	194	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATTTAAAGGAAGAAACCGA	NA	False	NA	NA	False	NA	NA	NA	39105320	39110564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr15_+_39106174_39108258_39108492_39110317
transcript_30828.known	chr15	+	1997	4	FSM	ENSMUSG00000022303.10	ENSMUST00000022913.6	1997	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	8.9938250421547	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTGATCATGTGACTTT	NA	False	NA	10	True	NA	NA	NA	39609327	39624334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_39609364_39617579_39618622_39622709_39623019_39623724
transcript_30829.known	chr15	+	1825	4	FSM	ENSMUSG00000022303.10	ENSMUST00000227368.2	1825	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	9.0921211313239	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTGCCTTGATCATGTGA	NA	False	NA	6	True	NA	NA	NA	39609327	39624330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_39609364_39617579_39618622_39622877_39623019_39623724
transcript_30834.known	chr15	-	2110	10	FSM	ENSMUSG00000022304.14	ENSMUST00000110306.9	2110	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	67.0043300609265	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAGTGTCTGAGTTCCAT	NA	False	NA	NA	False	AATAAA	-22	NA	39720866	39646092	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_39646506_39647964_39648111_39656622_39656831_39687561_39687705_39690259_39690402_39691370_39691528_39705318_39705509_39707253_39707434_39710004_39710164_39720494
transcript_30843.nic	chr15	-	831	2	ISM	ENSMUSG00000022304.14	ENSMUST00000110306.9	2110	10	72484	0	8265	0	3prime_fragment	FALSE	canonical	3	216	junction_1	0	1042	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAGTGTCTGAGTTCCAT	NA	False	NA	NA	False	AATAAA	-22	NA	39648382	39646092	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_39646506_39647964
transcript_30848.nnic	chr15	+	1623	4	NNC	ENSMUSG00000115367.2	novel	1064	3	NA	NA	-17	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6.12825877028341	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACTTCTTTCTGCCGTCA	NA	False	NA	NA	False	AATAAA	-14	NA	40025959	40031468	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_40026222_40028595_40028677_40029530_40030051_40030708
transcript_30853.nnic	chr15	+	489	4	NNC	ENSMUSG00000115367.2	novel	1064	3	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	4.78423336480244	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTTCTGCCGTCACCTG	NA	False	NA	NA	False	AATAAA	-18	NA	40025977	40031472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_40026081_40026194_40026222_40028595_40028677_40031194
transcript_30855.known	chr15	+	1064	3	FSM	ENSMUSG00000115367.2	ENSMUST00000228503.2	1064	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	6	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTTCTGCCGTCACCTG	NA	False	NA	NA	False	AATAAA	-18	NA	40026002	40031472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_40026222_40028595_40028677_40030708
transcript_30857.nnic	chr15	+	621	3	NNC	ENSMUSG00000115367.2	novel	1064	3	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	1	92	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTTCTGCCGTCACCTG	NA	False	NA	NA	False	AATAAA	-18	NA	40025959	40031472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_40026222_40028595_40028677_40031194
transcript_30861.nnic	chr15	-	756	3	Antisense	novelGene_ENSMUSG00000048559.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGACTCCTTCCTCCAAT	NA	False	NA	NA	False	NA	NA	NA	41037410	41031670	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr15_-_41031968_41032739_41032953_41037164
transcript_30863.known	chr15	+	798	6	FSM	ENSMUSG00000022307.17	ENSMUST00000166917.3	798	6	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	110.164241022212	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTAGCAGGACATCGGCCC	NA	False	NA	NA	False	AATAAA	-15	NA	41694327	41722704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_41694526_41713854_41713981_41714770_41714924_41716717_41716814_41718316_41718391_41722553
transcript_30866.known	chr15	+	4599	17	FSM	ENSMUSG00000022307.17	ENSMUST00000110297.10	4599	17	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_11	113.448208860916	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTTGGATTTTTTCAAT	NA	False	NA	NA	False	AATAAA	-21	NA	41310877	41724444	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_41310986_41398965_41399124_41516860_41517058_41660869_41660953_41663866_41663975_41664977_41665092_41676969_41677123_41680477_41680663_41683234_41683975_41686722_41686892_41689285_41689449_41712065_41712147_41713854_41713981_41714770_41714924_41716717_41716814_41718316_41718391_41722553
transcript_30867.known	chr15	-	2979	2	FSM	ENSMUSG00000042895.7	ENSMUST00000054742.7	2979	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAATGCTCCACCAGTTCC	NA	False	NA	NA	False	AAAACA	-44	NA	41733116	41727471	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_41729749_41732414
transcript_30869.nnic	chr15	+	578	4	Intergenic	novelGene_47	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	1.69967317119759	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGCTTCTGTCTCCCGA	NA	False	NA	NA	False	ATTAAA	-23	NA	41809520	41814646	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr15_+_41809618_41810304_41810401_41811196_41811379_41814443
transcript_3087.known	chr1	-	3072	12	FSM	ENSMUSG00000026234.13	ENSMUST00000185676.7	3072	12	0	0	0	0	multi-exon	FALSE	canonical	3	5685	junction_11	703.281070741144	12852	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAGACTTAATACTTCCT	NA	False	NA	-28	True	AGTAAA	-16	NA	86287086	86278216	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
transcript_30878.known	chr15	-	1506	13	FSM	ENSMUSG00000022336.4	ENSMUST00000022960.4	1506	13	0	0	0	0	multi-exon	TRUE	canonical	3	2495	junction_1	136.260065887095	9668	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTATTTTGCTTGAATT	2663	False	NA	-22	True	AATAAA	-16	NA	43146115	43113453	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
transcript_30884.known	chr15	+	1231	11	FSM	ENSMUSG00000022337.8	ENSMUST00000022962.8	1231	11	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_9	74.0384359640315	3421	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATGAAAATTCTAGTTTC	NA	False	NA	10	True	AATAAA	-20	NA	43340624	43391159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_43340722_43355565_43355680_43358135_43358201_43358559_43358646_43360456_43360515_43371040_43371127_43371257_43371318_43374210_43374293_43375095_43375207_43377140_43377246_43390792
transcript_30900.known	chr15	+	943	2	FSM	ENSMUSG00000115730.2	ENSMUST00000226624.2	943	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACGTTTTGGAAAGCAGTC	NA	False	NA	NA	False	NA	NA	NA	44145375	44147171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_44145451_44146303
transcript_30901.known	chr15	-	2600	10	FSM	ENSMUSG00000038736.11	ENSMUST00000038719.8	2600	10	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_5	53.0869308043159	216	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCATTGTTTAGATTGGT	NA	False	NA	71	True	AATAAA	-19	NA	44291703	44239466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_44240083_44243455_44243616_44251864_44251991_44259906_44260052_44263415_44263621_44264677_44264861_44268744_44268926_44269205_44269389_44284114_44284270_44291057
transcript_30907.known	chr15	+	767	6	FSM	ENSMUSG00000022338.9	ENSMUST00000226355.2	767	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	386.293670670385	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCATGAATGAGTTTCAAT	9616	False	NA	1	True	AATAAA	-3	NA	44291487	44299251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_44291639_44292955_44293033_44294086_44294191_44295833_44295905_44297249_44297370_44299007
transcript_30914.known	chr15	+	654	6	FSM	ENSMUSG00000022338.9	ENSMUST00000228130.2	654	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	414.684747730128	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGACTCTGTTTATTACTG	9651	False	NA	40	True	AATAAA	-42	NA	44291522	44299290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_44291567_44292955_44293033_44294086_44294191_44295833_44295905_44297294_44297370_44299007
transcript_30918.known	chr15	+	502	5	FSM	ENSMUSG00000022338.9	ENSMUST00000227425.2	502	5	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_3	351.373732655132	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGATTTATTTCTGAAA	9632	False	NA	-59	True	NA	NA	NA	44291503	44299106	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_44291639_44292955_44293033_44295833_44295905_44297249_44297370_44299007
transcript_30920.known	chr15	+	2547	5	FSM	ENSMUSG00000022338.9	ENSMUST00000226336.2	2547	5	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_3	350.174510066053	1328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGATTTAAAAAATGGCA	9639	False	NA	NA	False	TATAAA	-20	NA	44291510	44301205	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_44291639_44292955_44293033_44295833_44295905_44297296_44297370_44299007
transcript_30925.known	chr15	+	558	5	FSM	ENSMUSG00000022338.9	ENSMUST00000226827.2	558	5	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_1	272.243457221657	2310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCAATTTTTTTATTTTG	9616	False	NA	13	True	AATAAA	-15	NA	44291487	44299263	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_44291567_44292955_44293033_44295833_44295905_44297294_44297370_44299007
transcript_30941.known	chr15	+	1945	7	FSM	ENSMUSG00000022339.10	ENSMUST00000227691.2	1945	7	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	13.0894359440479	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAACTGATTTTCTGTGGC	NA	False	NA	NA	False	ATTAAA	-19	NA	44482570	44504911	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_44482766_44487838_44487937_44490952_44491032_44491771_44491931_44493500_44493609_44500159_44500252_44503697
transcript_30943.nic	chr15	+	1450	7	NIC	ENSMUSG00000022339.10	novel	1931	7	NA	NA	-57	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	30.6689310758189	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTTGTATATCCTTATT	NA	False	NA	12	True	ATTAAA	-22	NA	44482767	44504422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_+_44482957_44487838_44487937_44490952_44491032_44491771_44491931_44493500_44493609_44500159_44500252_44503697
transcript_30945.known	chr15	+	1931	7	FSM	ENSMUSG00000022339.10	ENSMUST00000226165.2	1931	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	30.3076814612328	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGCCTTCAGTTTTCATT	NA	False	NA	NA	False	NA	NA	NA	44482835	44504624	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_44483304_44487838_44487937_44490952_44491032_44491771_44491931_44493500_44493609_44500159_44500252_44503697
transcript_30947.known	chr15	+	1613	7	FSM	ENSMUSG00000022339.10	ENSMUST00000022964.9	1613	7	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	29.9467119322899	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTTGTATATCCTTATT	NA	False	NA	12	True	ATTAAA	-22	NA	44482986	44504422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_44483339_44487838_44487937_44490952_44491032_44491771_44491931_44493500_44493609_44500159_44500252_44503697
transcript_30949.known	chr15	+	854	3	FSM	ENSMUSG00000060530.3	ENSMUST00000181839.3	854	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTATGTGTCCAAGTTATC	NA	False	NA	NA	False	AATAAA	-15	NA	44651164	44669223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_44651287_44651880_44652020_44668630
transcript_30950.known	chr15	-	4389	3	FSM	ENSMUSG00000022342.7	ENSMUST00000022967.7	4389	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGTTTTGTTATATTCC	NA	False	NA	NA	False	NA	NA	NA	44978223	44969679	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_44972882_44976285_44976816_44977566
transcript_30964.known	chr15	-	1295	8	FSM	ENSMUSG00000022312.12	ENSMUST00000022925.10	1295	8	0	0	0	0	multi-exon	FALSE	canonical	3	1820	junction_5	77.7200628104822	17604	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGTGTATTTATGGTG	NA	False	NA	-12	True	AATAAA	-24	NA	51728919	51649953	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_51650222_51651301_51651435_51653388_51653510_51659783_51659934_51661008_51661109_51662587_51662756_51705863_51706021_51728721
transcript_30968.known	chr15	+	2921	3	FSM	ENSMUSG00000022313.11	ENSMUST00000137116.3	2921	3	0	0	0	0	multi-exon	FALSE	canonical	3	321	junction_1	13	1241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGTTTAATAATAGTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	51740824	51748010	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_51741107_51744411_51744587_51745546
transcript_30971.known	chr15	+	779	3	FSM	ENSMUSG00000022313.11	ENSMUST00000136129.2	779	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	172.5	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTGCATCTTCAGTTGTT	NA	False	NA	21	True	AGTAAA	-18	NA	51741137	51746079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_51741209_51744411_51744587_51745546
transcript_30972.known	chr15	+	582	2	FSM	ENSMUSG00000022313.11	ENSMUST00000161651.2	582	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTCAGTTGTTGCTTTG	NA	False	NA	27	True	AGTAAA	-24	NA	51740873	51746085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_51741040_51745669
transcript_30973.known	chr15	+	740	2	FSM	ENSMUSG00000022313.11	ENSMUST00000059599.10	740	2	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	0	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGCATCTTCAGTTGTTG	NA	False	NA	22	True	AGTAAA	-19	NA	51740900	51746080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_51741107_51745546
transcript_30975.known	chr15	-	3956	14	FSM	ENSMUSG00000022314.11	ENSMUST00000022927.11	3956	14	0	0	0	0	multi-exon	FALSE	canonical	3	565	junction_13	70.6746022859982	690	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTTAGACCCGGGAAGA	NA	False	NA	NA	False	NA	NA	NA	51855143	51825635	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_51827644_51828350_51828435_51829977_51830128_51831183_51831333_51831746_51831919_51833316_51833541_51835141_51835265_51835597_51835724_51836481_51836689_51837232_51837340_51839494_51839595_51841440_51841571_51845924_51846100_51854942
transcript_30981.known	chr15	+	1348	2	FSM	ENSMUSG00000068522.5	ENSMUST00000090025.5	1348	2	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_1	0	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTGTTTCTAGTGGTCAT	NA	False	NA	16	True	AATAAA	-27	NA	51903502	51909118	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_51903927_51908194
transcript_30982.known	chr15	+	646	1	FSM	ENSMUSG00000115457.2	ENSMUST00000227885.2	646	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	171	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTTCAATAGTTCTCTCC	NA	False	NA	NA	False	NA	NA	NA	51952703	51953349	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_51952700_51953300
transcript_30983.known	chr15	-	612	1	FSM	ENSMUSG00000057262.3	ENSMUST00000081993.3	612	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	287	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATACCATGATATTTGTAA	NA	False	NA	NA	False	NA	NA	NA	52341624	52341012	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_52341000_52341600
transcript_30984.known	chr15	+	1007	4	FSM	ENSMUSG00000038622.9	ENSMUST00000037115.9	1007	4	0	0	0	0	multi-exon	FALSE	canonical	3	604	junction_2	11.2644968324772	180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTCAGTTTTACTTTCA	NA	False	NA	NA	False	AATAAA	-21	NA	52575837	52593960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_52576083_52582741_52582901_52584419_52584525_52593462
transcript_30985.known	chr15	-	7663	11	FSM	ENSMUSG00000061731.10	ENSMUST00000077273.9	7663	11	0	0	0	0	multi-exon	TRUE	canonical	3	89	junction_10	11.8574870862253	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGGTCTGATTCCATTTT	NA	False	NA	NA	False	AATAAA	-39	NA	53209555	52927433	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_52932246_52936688_52936861_52939164_52939326_52946480_52946571_52951450_52951547_52953326_52953446_52955678_52955812_52965080_52965201_52969422_52969531_52970873_52970968_53207797
transcript_30988.known	chr15	-	9019	5	FSM	ENSMUSG00000058656.14	ENSMUST00000078673.14	9019	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.29903810567666	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACCGTGTAAAAGTGTTT	NA	False	NA	-10	True	ATTAAA	-14	NA	53765926	53317205	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_53325613_53521745_53521887_53583010_53583141_53723499_53723679_53765764
transcript_30992.known	chr15	-	405	1	FSM	ENSMUSG00000050978.4	ENSMUST00000054380.4	405	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTTATGCCATATTTTCA	NA	False	NA	NA	False	AAAACA	-19	NA	54175761	54175356	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_54175400_54175800
transcript_30994.known	chr15	-	5031	26	FSM	ENSMUSG00000037343.9	ENSMUST00000041733.9	5031	26	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_25	41.14333967971	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTCTGCCTTTGTTTTTCT	NA	False	NA	-6	True	AATAAA	-18	NA	54935548	54878526	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_54879998_54885597_54885721_54890567_54890674_54891713_54891944_54894441_54894552_54897558_54897629_54899913_54900054_54901634_54901829_54903758_54903870_54906504_54906646_54909131_54909385_54910813_54910880_54911621_54911732_54912022_54912138_54912790_54912946_54915511_54915648_54917629_54917716_54919182_54919283_54922194_54922309_54923298_54923484_54925448_54925681_54926388_54926531_54927983_54928103_54929255_54929417_54934788_54934844_54935242
transcript_30997.known	chr15	-	1324	9	FSM	ENSMUSG00000022422.14	ENSMUST00000023059.13	1324	9	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_7	27.4268914571083	1657	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTATCCCTGACTTCTTT	NA	False	NA	-5	True	AATAAA	-17	NA	54953887	54939494	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_54939662_54943588_54943738_54945562_54945718_54946441_54946495_54947444_54947584_54950148_54950240_54950997_54951133_54952350_54952520_54953621
transcript_30998.known	chr15	-	1499	10	FSM	ENSMUSG00000022422.14	ENSMUST00000110231.2	1499	10	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_5	97.4314573887145	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTTTATCCCTGACTTC	NA	False	NA	-8	True	AATAAA	-14	NA	54953876	54939497	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_54939662_54943588_54943738_54945562_54945718_54946441_54946495_54946800_54946990_54947444_54947584_54950148_54950240_54950997_54951133_54952350_54952520_54953621
transcript_30999.known	chr15	+	8547	9	FSM	ENSMUSG00000022419.17	ENSMUST00000096433.10	8547	9	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_7	6.05702071979286	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGTGCTGACTTTTTCTC	NA	False	NA	10	True	AATAAA	-21	NA	54975712	55122667	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_54976016_55012736_55012916_55015183_55015308_55044260_55044440_55072126_55072313_55075587_55075723_55078883_55078955_55081564_55081670_55115402
transcript_31.known	ERCC-00069	+	1121	1	FSM	ERCC-00069A	DQ459421	1121	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1121	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00069_+_0_1100
transcript_31002.known	chr15	-	935	5	FSM	ENSMUSG00000053749.13	ENSMUST00000110230.8	935	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.82915619758885	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGACTTACCTTTTAT	9884	False	NA	NA	False	ATTAAA	-15	NA	54976978	54963312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_54963589_54972308_54972374_54974515_54974613_54975738_54975993_54976735
transcript_31004.known	chr15	-	503	3	FSM	ENSMUSG00000053749.13	ENSMUST00000100659.3	503	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATCTGTGTTCTGAGCTA	NA	False	NA	NA	False	NA	NA	NA	54976856	54963460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_54963589_54975738_54975993_54976735
transcript_31007.known	chr15	-	855	2	FSM	ENSMUSG00000053749.13	ENSMUST00000137301.2	855	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGCTGCATTAAAGATGTT	NA	False	NA	NA	False	NA	NA	NA	54976856	54975258	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_54975993_54976735
transcript_31011.known	chr15	+	3144	22	FSM	ENSMUSG00000022369.14	ENSMUST00000022998.14	3144	22	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_14	23.9707872097639	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTGGATTGCATGTCCT	NA	False	NA	NA	False	AATAAA	-17	NA	55420803	55489819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_55421134_55421896_55421978_55426098_55426173_55426332_55426485_55428008_55428068_55429589_55429735_55430573_55430692_55432441_55432556_55434690_55434786_55436291_55436365_55440843_55440962_55449706_55449881_55452051_55452160_55460737_55460900_55466579_55466698_55470039_55470196_55474333_55474430_55480877_55481145_55483033_55483272_55484018_55484133_55488786_55488853_55489533
transcript_31025.known	chr15	-	1223	7	FSM	ENSMUSG00000022370.14	ENSMUST00000172387.8	1223	7	0	0	0	0	multi-exon	FALSE	canonical	3	905	junction_4	55.6070039553372	8286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATGTCTCTTACTGAAA	NA	False	NA	0	True	AATAAA	-20	NA	55421144	55397489	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_55397734_55402425_55402548_55403518_55403606_55406719_55406781_55411537_55411632_55418715_55418840_55420653
transcript_31026.known	chr15	-	730	6	FSM	ENSMUSG00000022370.14	ENSMUST00000164542.8	730	6	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_4	366.126754007407	1148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATGTCTCTTACTGAAA	NA	False	NA	0	True	AATAAA	-20	NA	55420745	55397489	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_55397734_55402425_55402548_55403518_55403606_55406719_55406781_55418715_55418840_55420653
transcript_31029.known	chr15	-	566	2	FSM	ENSMUSG00000090002.2	ENSMUST00000160938.2	566	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGTTTGGTGGCTTTTC	NA	False	NA	NA	False	AATACA	-23	NA	57572323	57571509	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_57572037_57572284
transcript_31030.known	chr15	-	3175	8	FSM	ENSMUSG00000022365.7	ENSMUST00000022993.7	3175	8	0	0	0	0	multi-exon	TRUE	canonical	3	365	junction_5	42.5977866628236	273	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAAAGATGGTATGTGAG	NA	False	NA	NA	False	NA	NA	NA	57755844	57732897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_57735303_57738892_57739004_57740813_57740867_57741880_57741977_57742444_57742472_57743395_57743461_57746830_57746943_57755538
transcript_31039.known	chr15	+	3311	21	FSM	ENSMUSG00000022364.15	ENSMUST00000022992.13	3311	21	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_2	36.9403234961471	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAAGCTGAACTGTCTTC	NA	False	NA	8	True	AATAAA	-15	NA	57775594	57833457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_57775788_57779365_57779513_57783326_57783443_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57827199_57827321_57831304_57831401_57833119
transcript_31063.nic	chr15	+	923	3	ISM	ENSMUSG00000022364.15	ENSMUST00000161329.2	914	6	5023	6	5023	0	3prime_fragment	FALSE	canonical	3	284	junction_1	37.5	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAAGCTGAACTGTCTTC	NA	False	NA	8	True	AATAAA	-15	NA	57826831	57833457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_+_57827321_57831304_57831401_57833119
transcript_31064.nnic	chr15	+	549	3	NNC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	5681	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	176.5	652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAAGCTGAACTGTCTTC	NA	False	NA	8	True	AATAAA	-15	NA	57827489	57833457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_57827605_57831304_57831401_57833119
transcript_31066.nnic	chr15	+	822	3	NNC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	8462	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	173	704	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAAGCTGAACTGTCTTC	NA	False	NA	8	True	AATAAA	-15	NA	57830270	57833457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_57830659_57831304_57831401_57833119
transcript_31068.nnic	chr15	+	825	2	NIC	ENSMUSG00000022364.15	novel	914	6	NA	NA	5026	1	combination_of_known_splicesites	FALSE	canonical	3	57	junction_1	0	872	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCTGAACTGTCTTCT	NA	False	NA	9	True	AATAAA	-16	NA	57826834	57833458	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_+_57827321_57833119
transcript_31069.nnic	chr15	+	1286	2	NNC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	10222	1	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	0	626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCTGAACTGTCTTCT	NA	False	NA	9	True	AATAAA	-16	NA	57832030	57833458	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_57832978_57833119
transcript_31070.known	chr15	+	2876	4	FSM	ENSMUSG00000051225.10	ENSMUST00000160942.8	2876	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	4.49691252107735	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGGACATAAATGTGAAACC	9213	False	NA	NA	False	NA	NA	NA	57848814	57874405	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_57849938_57856302_57856471_57858609_57858735_57872945
transcript_31071.nnic	chr15	+	1569	2	NNC	ENSMUSG00000051225.10	novel	529	2	NA	NA	-46	-303	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCCCTGGACCTGATGG	NA	False	NA	NA	False	NA	NA	NA	57865495	57874102	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_57865908_57872945
transcript_31083.known	chr15	-	4764	4	FSM	ENSMUSG00000022361.15	ENSMUST00000070143.13	4764	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	5.18544972870135	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTAATGTGGTCTGAGTT	NA	False	NA	-1	True	ATTAAA	-21	NA	57939865	57910700	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_57912182_57915619_57918479_57932714_57932826_57939552
transcript_31093.known	chr15	-	281	3	FSM	ENSMUSG00000022362.14	ENSMUST00000176076.2	281	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	19	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATCCAATGTCCAAAAGAA	NA	False	NA	NA	False	AAAACA	-1	NA	57939602	57912061	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_57912182_57932714_57932826_57939552
transcript_31095.known	chr15	-	1341	6	FSM	ENSMUSG00000101892.2	ENSMUST00000100655.5	1341	6	0	0	0	0	multi-exon	FALSE	canonical	3	653	junction_4	117.266534015464	5721	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATTTCAGCTGCTCTCAG	NA	False	NA	-9	True	AATAAA	-40	NA	57897711	57885654	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_57885960_57888669_57888803_57892009_57892441_57894352_57894497_57895379_57895476_57897479
transcript_31096.known	chr15	-	5684	28	FSM	ENSMUSG00000022360.9	ENSMUST00000038194.5	5684	28	0	0	0	0	multi-exon	TRUE	canonical	3	283	junction_25	31.7407623492731	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCGTTTCTAGTTCTTGT	NA	False	NA	-11	True	AATAAA	-20	NA	57998478	57957441	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_57958968_57959972_57960102_57960647_57960782_57961754_57962145_57963106_57963251_57963362_57963486_57965772_57965933_57966593_57966791_57967826_57967963_57968872_57969059_57970120_57970308_57971476_57971592_57971698_57972014_57973343_57973435_57974512_57974673_57977565_57977655_57979067_57979243_57980163_57980280_57980633_57980743_57981740_57981846_57984337_57984456_57985848_57985999_57989137_57989226_57989443_57989547_57989944_57990111_57991604_57991652_57995588_57995738_57998202
transcript_31099.known	chr15	+	1383	6	FSM	ENSMUSG00000022359.11	ENSMUST00000067563.9	1383	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_4	11.5516232625549	486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCTTTTGAAGAATCTG	2660	False	NA	27	True	AATAAA	-17	NA	58004772	58022050	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_58004978_58011729_58011830_58014001_58014053_58015992_58016142_58016975_58017101_58021297
transcript_3110.known	chr1	+	1216	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	0	0	0	0	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	98575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTTTTTCTGTGTGTA	NA	False	NA	57	True	NA	NA	NA	86454447	86458434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
transcript_31100.known	chr15	+	786	6	FSM	ENSMUSG00000022359.11	ENSMUST00000227142.2	786	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	23.3203773554375	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATATTGTTTGTTTGTT	2691	False	NA	NA	False	CATAAA	-13	NA	58004803	58018721	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_58004978_58011729_58011830_58014001_58014053_58015992_58016142_58016975_58017101_58018534
transcript_31101.known	chr15	+	798	5	FSM	ENSMUSG00000022359.11	ENSMUST00000228761.2	798	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	18.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCCCAGCCTCAGACATAG	2675	False	NA	NA	False	NA	NA	NA	58004787	58021629	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_58004978_58011729_58011830_58014001_58014053_58016975_58017101_58021297
transcript_31103.nnic	chr15	+	752	2	Antisense	novelGene_ENSMUSG00000022358.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	0	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTGGCTATATGTTCCT	NA	False	NA	NA	False	NA	NA	NA	58024791	58048278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr15_+_58025072_58047806
transcript_31105.nnic	chr15	+	723	2	Antisense	novelGene_ENSMUSG00000022358.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATATGTTCCTTTATTCT	NA	False	NA	NA	False	NA	NA	NA	58024809	58048285	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr15_+_58025072_58047824
transcript_31107.nnic	chr15	+	748	2	Antisense	novelGene_ENSMUSG00000022358.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	0	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGCTATATGTTCCTT	NA	False	NA	NA	False	NA	NA	NA	58024818	58048279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr15_+_58025076_58047788
transcript_31109.known	chr15	+	5560	24	FSM	ENSMUSG00000037119.5	ENSMUST00000037270.5	5560	24	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_5	31.8077875639983	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTGTGGAGAGTGTCTAA	NA	False	NA	16	True	AATAAA	-16	NA	58287316	58329589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_58287627_58292047_58292133_58293594_58293747_58295169_58295228_58296045_58296114_58296625_58296740_58298442_58298534_58298902_58298966_58301840_58301948_58302027_58302067_58302510_58302624_58303054_58303171_58304363_58304477_58304742_58304830_58306512_58306646_58313426_58313576_58314680_58314816_58315009_58315124_58319434_58319508_58320191_58320342_58321779_58321885_58322386_58322511_58324831_58324902_58326598
transcript_3111.known	chr1	+	768	4	FSM	ENSMUSG00000026238.15	ENSMUST00000186255.7	768	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	10628.523175347	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCTACTTCAGACTTTAC	NA	False	NA	NA	False	NA	NA	NA	86454457	86458093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_86454673_86456894_86456967_86457452_86457527_86457686
transcript_31119.known	chr15	-	915	12	FSM	ENSMUSG00000050891.11	ENSMUST00000228538.3	915	12	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_6	18.2181455270914	1198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTTCCTTTTTATGA	NA	False	NA	-1	True	ATTAAA	-16	NA	58805576	58772822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58795753_58795818_58798284_58798335_58800532_58800599_58805527
transcript_31127.known	chr15	-	1819	10	FSM	ENSMUSG00000050891.11	ENSMUST00000227540.2	1819	10	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	38.5140666943045	735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTTGAGTTATCCTTGA	NA	False	NA	-3	True	AATAAA	-16	NA	58805587	58771779	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58792988_58793032_58793122_58793267_58798284_58798335_58800532_58800599_58805527
transcript_31136.known	chr15	+	4348	2	FSM	ENSMUSG00000037075.8	ENSMUST00000036904.7	4348	2	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTGGGGTATTGTGACAC	NA	False	NA	NA	False	AATAAA	-25	NA	58761077	58774239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_58761344_58770157
transcript_31139.known	chr15	-	2089	2	FSM	ENSMUSG00000050891.11	ENSMUST00000226141.2	2089	2	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCAGCTTCTTGCTTTAT	NA	False	NA	NA	False	ATTAAA	-13	NA	58805562	58798544	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_58800599_58805527
transcript_31140.known	chr15	+	704	4	FSM	ENSMUSG00000022354.5	ENSMUST00000022980.5	704	4	0	0	0	0	multi-exon	FALSE	canonical	3	3308	junction_3	178.75557489364	16206	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGCTGTGCCTGAAGTGT	2816	False	NA	13	True	AATAAA	-14	NA	58805604	58811337	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_58805788_58808116_58808310_58809200_58809315_58811123
transcript_31141.known	chr15	-	922	10	FSM	ENSMUSG00000050891.11	ENSMUST00000226707.2	922	10	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	44.4124885117066	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTGTGTTTCCTTTTTA	NA	False	NA	-4	True	ATTAAA	-13	NA	58805587	58772825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_58772920_58776582_58776710_58777589_58777661_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58798284_58798335_58800392_58800599_58805527
transcript_31142.known	chr15	-	1427	9	FSM	ENSMUSG00000050891.11	ENSMUST00000226835.2	1427	9	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	30.9230395498243	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GGAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	58805587	58780701	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_58781499_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58795677_58795818_58798284_58798335_58800532_58800599_58805527
transcript_31143.known	chr15	-	2956	3	FSM	ENSMUSG00000022353.11	ENSMUST00000228655.2	2956	3	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_2	3.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAAAAAAAAAAATCTA	2729	False	NA	NA	False	AGTAAA	-21	NA	58953854	58924596	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_58926941_58930209_58930272_58953304
transcript_31144.nnic	chr15	+	833	2	Genic_Genomic	ENSMUSG00000025922.10	novel	810	1	NA	NA	-11	78	multi-exon	TRUE	canonical	0	0	junction_1	0	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTGAATAGCCACAACCAG	NA	False	NA	NA	False	AATAAA	-34	NA	59082745	59083644	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr15_+_59082787_59082852
transcript_31146.known	chr15	+	2758	11	FSM	ENSMUSG00000022351.15	ENSMUST00000022977.14	2758	11	0	0	0	0	multi-exon	FALSE	canonical	3	657	junction_1	53.8835782033822	504	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTCTTTTGGTTTTTGTT	NA	False	NA	13	True	AATAAA	-18	NA	59186929	59203041	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_59187979_59189644_59189898_59193162_59193344_59194684_59194782_59195462_59195577_59195655_59195828_59196310_59196407_59197883_59198027_59198418_59198516_59201588_59201677_59202573
transcript_3115.known	chr1	-	1306	5	FSM	ENSMUSG00000026239.15	ENSMUST00000143674.8	1306	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	145.167145043222	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGCATGCCGATGCTTCC	NA	False	NA	-11	True	ATTAAA	-15	NA	86510351	86470743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_86471306_86473423_86473530_86474378_86474505_86475157_86475340_86510021
transcript_31150.known	chr15	-	4033	29	FSM	ENSMUSG00000022350.8	ENSMUST00000022976.6	4033	29	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_18	44.6203943487363	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTTGCCCTGCTTGTGA	NA	False	NA	-3	True	AGTAAA	-16	NA	59246016	59203845	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_59204209_59205466_59205555_59206936_59207091_59209041_59209139_59210762_59210893_59211662_59211767_59212740_59212821_59212908_59213012_59213787_59213951_59215873_59215999_59217186_59217367_59218062_59218165_59218668_59218750_59220233_59220375_59221141_59221253_59221980_59222057_59222135_59222303_59223320_59223434_59224349_59224480_59227682_59227811_59231111_59231284_59232971_59233086_59235042_59235196_59238011_59238205_59239243_59239345_59240224_59240310_59241001_59241148_59241728_59242035_59245889
transcript_31158.known	chr15	+	1054	7	FSM	ENSMUSG00000059586.11	ENSMUST00000079703.11	1054	7	0	0	0	0	multi-exon	FALSE	canonical	3	776	junction_4	74.7677886674618	4230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGCATGGTCCTGTCTG	NA	False	NA	16	True	AATAAA	-17	NA	59246135	59473533	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_59246205_59250716_59250888_59287873_59287981_59327161_59327316_59463545_59463647_59463986_59464094_59473188
transcript_31159.known	chr15	+	1122	8	FSM	ENSMUSG00000059586.11	ENSMUST00000227173.2	1122	8	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_4	348.219025608766	756	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATAATCCTCAGCTCAGCA	NA	False	NA	4	True	AATAAA	-5	NA	59246133	59473521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_59246205_59250716_59250888_59287873_59287981_59327161_59327316_59368625_59368704_59463545_59463647_59463986_59464094_59473188
transcript_3116.known	chr1	-	1159	5	FSM	ENSMUSG00000026239.15	ENSMUST00000027444.15	1159	5	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_1	25.5391855782443	1147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCTGGACTGTGACTCT	NA	False	NA	17	True	ATTAAA	-43	NA	86510269	86470715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_86471306_86473423_86473530_86474378_86474505_86475250_86475340_86510021
transcript_31160.known	chr15	-	1748	1	FSM	ENSMUSG00000071749.4	ENSMUST00000096421.4	1748	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGAACGCTGGCTTGTTT	NA	False	NA	NA	False	AATAAA	-33	NA	59888462	59886714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_59886700_59888500
transcript_31161.nnic	chr15	+	1896	3	NNC	ENSMUSG00000097493.4	novel	3074	3	NA	NA	139	0	intron_retention	FALSE	canonical	1	1	junction_1	1.5	23	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTTGGTGAGTTCCTGTC	NA	False	NA	NA	False	AATAAA	-15	NA	60694940	60700499	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_60696276_60699180_60699212_60699969
transcript_31162.known	chr15	-	5565	2	FSM	ENSMUSG00000072568.5	ENSMUST00000100635.5	5565	2	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGTTTTCCTTTTTTTTTC	NA	False	NA	NA	False	AATACA	-14	NA	60696929	60690842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_60695841_60696362
transcript_31173.known	chr15	+	1563	9	FSM	ENSMUSG00000097039.9	ENSMUST00000180432.9	1563	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	11.0163231161763	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTATTGAAGTCATGATT	NA	False	NA	23	True	AATAAA	-31	NA	61909895	62121373	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_61910051_61978996_61979315_62021087_62021202_62031845_62031978_62047315_62047398_62114022_62114151_62114282_62114411_62116567_62116707_62121006
transcript_31183.nnic	chr15	+	1501	8	NIC	ENSMUSG00000097039.9	novel	1563	9	NA	NA	-7	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_2	5.85191404236115	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATTGAAGTCATGATTGT	NA	False	NA	25	True	AATAAA	-33	NA	61909827	62121375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_+_61910051_61978996_61979315_62021087_62021202_62047315_62047398_62114022_62114151_62114282_62114411_62116567_62116707_62121006
transcript_31197.nnic	chr15	+	1364	7	NIC	ENSMUSG00000097039.9	novel	1563	9	NA	NA	-7	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_2	6.0736223860962	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGAAGTCATGATTGTCA	NA	False	NA	27	True	AATAAA	-35	NA	61909827	62121377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_+_61910051_61978996_61979315_62021087_62021202_62047315_62047398_62114022_62114151_62114282_62114411_62121006
transcript_31201.nic	chr15	+	1387	7	NIC	ENSMUSG00000097039.9	novel	1563	9	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_2	7.7817450199525	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATTGAAGTCATGATTGT	NA	False	NA	25	True	AATAAA	-33	NA	61909827	62121375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_+_61910051_61978996_61979315_62047315_62047398_62114022_62114151_62114282_62114411_62116567_62116707_62121006
transcript_31213.nic	chr15	+	1250	6	NIC	ENSMUSG00000097039.9	novel	1342	7	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_2	8.29457654133109	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGAAGTCATGATTGTCA	NA	False	NA	27	True	AATAAA	-35	NA	61909827	62121377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_+_61910051_61978996_61979315_62047315_62047398_62114022_62114151_62114282_62114411_62121006
transcript_31215.nnic	chr15	+	1036	6	NIC	ENSMUSG00000097039.9	novel	1563	9	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	10.6282642044691	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGAAGTCATGATTGTCA	NA	False	NA	27	True	AATAAA	-35	NA	61909837	62121377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_+_61910051_62021087_62021202_62047315_62047398_62114022_62114151_62114282_62114411_62121006
transcript_31226.nic	chr15	+	748	2	ISM	ENSMUSG00000097039.9	ENSMUST00000182956.8	1342	7	-7	141856	-7	0	5prime_fragment	FALSE	canonical	3	30	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTCTTTCTTTTTCTTTT	NA	False	NA	NA	False	AATAGA	-16	NA	61909827	61979521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_+_61910051_61978996
transcript_31231.known	chr15	-	1896	13	FSM	ENSMUSG00000022378.15	ENSMUST00000228226.2	1896	13	0	0	0	0	multi-exon	FALSE	canonical	3	743	junction_12	159.721024150096	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGGCTTGGTTTACTG	NA	False	NA	-6	True	AATAAA	-20	NA	63932192	63802792	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63842778_63842818_63894418_63894470_63932043
transcript_31232.nnic	chr15	-	1826	13	NIC	ENSMUSG00000022378.15	novel	1896	13	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	3	70	junction_12	311.438095775067	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGCTTGGTTTACTGAG	NA	False	NA	-4	True	AATAAA	-22	NA	63932352	63802790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63842778_63842818_63894418_63894470_63932275
transcript_31233.known	chr15	-	1770	12	FSM	ENSMUSG00000022378.15	ENSMUST00000164532.3	1770	12	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_11	247.062410558028	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGCTTGGTTTACTGAG	8739	False	NA	-4	True	AATAAA	-22	NA	63869818	63802790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63842778_63842818_63869746
transcript_31241.known	chr15	+	5215	23	FSM	ENSMUSG00000015002.19	ENSMUST00000015146.16	5215	23	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_16	48.5493912261498	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTGCATTTTTATTATAG	NA	False	NA	17	True	AATAAA	-24	NA	65658888	65745665	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_65659096_65687183_65687261_65690281_65690410_65691568_65691720_65696462_65696585_65701575_65701726_65709283_65709422_65714490_65714570_65717757_65717894_65719996_65720159_65721611_65721727_65722972_65723025_65724809_65724983_65725379_65725456_65726477_65726640_65727264_65727397_65728370_65728439_65729312_65729441_65733500_65733593_65737726_65737776_65738572_65738677_65739118_65739169_65743001
transcript_31248.nic	chr15	+	1982	15	NIC	ENSMUSG00000015002.19	novel	5215	23	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_14	139.24783367677	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACTGTCTTGGCTACATT	NA	False	NA	NA	False	NA	NA	NA	65658886	65725955	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_+_65659096_65687183_65687261_65690281_65690410_65691568_65691720_65696462_65696585_65701575_65701726_65709283_65709422_65714490_65714570_65717757_65717894_65719996_65720159_65721611_65721727_65722972_65723025_65724809_65724983_65725379_65725456_65725741
transcript_31250.known	chr15	+	981	3	FSM	ENSMUSG00000015002.19	ENSMUST00000096411.4	981	3	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATTTGTCAGACTATTTT	NA	False	NA	NA	False	NA	NA	NA	65658889	65662683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_65659096_65660150_65660231_65661988
transcript_31251.known	chr15	+	1425	2	FSM	ENSMUSG00000015002.19	ENSMUST00000174135.2	1425	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACCTGTCTTAAAGATTAT	NA	False	NA	NA	False	AATAAA	-21	NA	65658882	65663200	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_65659096_65661988
transcript_31252.known	chr15	+	2848	23	FSM	ENSMUSG00000015002.19	ENSMUST00000173858.8	2848	23	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_22	108.882983667015	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGCAAAAATGATGTGCA	NA	False	NA	NA	False	ATTAAA	-21	NA	65658889	65741100	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_65659096_65687183_65687261_65690281_65690410_65691568_65691720_65696462_65696585_65701575_65701726_65709283_65709422_65714490_65714570_65717757_65717894_65719996_65720159_65721611_65721727_65722972_65723025_65724809_65724983_65725379_65725456_65726477_65726640_65727264_65727397_65728370_65728439_65729312_65729441_65733500_65733593_65737726_65737776_65738572_65738677_65739118_65739169_65740802
transcript_31253.known	chr15	-	2889	16	FSM	ENSMUSG00000005125.14	ENSMUST00000005256.14	2889	16	0	0	0	0	multi-exon	FALSE	canonical	2	22	junction_13	7.67854152818099	157	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGTCTTTTCCTCTCC	NA	False	NA	0	True	AATAAA	-18	NA	66841489	66801166	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_66802958_66805712_66805765_66808101_66808138_66809046_66809095_66809715_66809768_66810491_66810549_66811991_66812096_66813860_66813918_66814913_66815001_66815852_66815914_66816624_66816688_66818280_66818402_66820227_66820334_66831210_66831247_66832320_66832402_66841352
transcript_31255.known	chr15	-	5732	9	FSM	ENSMUSG00000013846.11	ENSMUST00000229028.2	5732	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	1.93649167310371	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCGTGTTCGGAGTTCTG	NA	False	NA	NA	False	AATAAA	-21	NA	67048679	66974723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_66978680_66980057_66980178_66981454_66981501_66983080_66983261_66984279_66984477_66985355_66986207_67000401_67000457_67024891_67025020_67048480
transcript_31258.known	chr15	+	483	1	FSM	ENSMUSG00000068397.5	ENSMUST00000089785.5	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17541	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTACACAAAGAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	68181667	68182150	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_68181700_68182200
transcript_3126.known	chr1	+	5383	8	FSM	ENSMUSG00000026240.13	ENSMUST00000121534.8	5383	8	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	127.599500990643	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACATTAAAAAAAAAAAAAGA	6007	False	NA	NA	False	ACTAAA	-5	NA	86510625	86537097	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_86510819_86514737_86514958_86516885_86517064_86520012_86520089_86524472_86524562_86526724_86526928_86528804_86528911_86532779
transcript_31262.known	chr15	+	871	3	FSM	ENSMUSG00000068391.9	ENSMUST00000089765.9	871	3	0	0	0	0	multi-exon	FALSE	canonical	3	479	junction_2	8	1666	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATGCTTCATTGAAGTGG	NA	False	NA	7	True	ATTAAA	-18	NA	72962240	72965924	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_72962433_72964681_72964809_72965372
transcript_31263.known	chr15	+	538	3	FSM	ENSMUSG00000068391.9	ENSMUST00000134353.2	538	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	247.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAGCAGAGACAAAGCA	NA	False	NA	NA	False	AAGAAA	-43	NA	72962240	72969403	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_72962433_72964681_72964809_72969184
transcript_31267.known	chr15	+	2114	2	FSM	ENSMUSG00000068391.9	ENSMUST00000137698.2	2114	2	0	0	0	0	multi-exon	FALSE	canonical	3	495	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGACACATTGTGTTTGTGT	NA	False	NA	NA	False	TATAAA	-3	NA	72962260	72966623	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_72962433_72964681
transcript_31269.known	chr15	-	1333	10	FSM	ENSMUSG00000022607.19	ENSMUST00000228180.3	1333	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	91.481631428877	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTCTGTGTTTCATCTTGT	1656	False	NA	NA	False	AATAAA	-15	NA	73295061	73192083	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_73192265_73192623_73192687_73192889_73192970_73197597_73197686_73202697_73202865_73214981_73215209_73263607_73263730_73264192_73264297_73266496_73266594_73294857
transcript_3127.nnic	chr1	+	2056	7	NIC	ENSMUSG00000026240.13	novel	5383	8	NA	NA	-8	-66	combination_of_known_splicesites	FALSE	canonical	2	14	junction_1	132.540140670247	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTTTTGTGTCAATATT	5999	False	NA	27	True	AATACA	-17	NA	86510617	86533982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_86510819_86516885_86517064_86520012_86520089_86524472_86524562_86526724_86526928_86528804_86528911_86532779
transcript_31271.known	chr15	+	799	1	FSM	ENSMUSG00000115810.2	ENSMUST00000226643.2	799	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTGCCATATTTTAGTG	NA	False	NA	NA	False	AATAAA	-18	NA	73295159	73295958	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_73295200_73296000
transcript_31272.known	chr15	-	552	1	FSM	ENSMUSG00000116174.2	ENSMUST00000229262.2	552	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	747	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATTCAGCATAAAATAAA	NA	False	NA	NA	False	AAGAAA	-31	NA	73300759	73300207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_73300200_73300800
transcript_31274.known	chr15	+	5299	23	FSM	ENSMUSG00000036661.15	ENSMUST00000043414.12	5299	23	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_14	7.34678205825995	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGCTGCTATGAATGGAT	NA	False	NA	NA	False	AATAAA	-32	NA	73384408	73444091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_73384697_73394078_73394356_73395287_73395404_73395987_73396122_73399764_73399877_73404667_73404788_73405109_73405329_73409138_73409261_73412541_73412698_73414568_73414666_73416206_73416311_73416794_73416995_73418969_73419492_73426905_73427166_73428196_73428368_73429430_73429561_73434173_73434282_73436345_73436486_73436864_73437023_73438881_73439016_73440270_73440375_73440456_73440595_73442602
transcript_31276.known	chr15	-	2144	2	FSM	ENSMUSG00000045281.6	ENSMUST00000064166.5	2144	2	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGGGCCAACAGCCCAAG	NA	False	NA	NA	False	AATAAA	-19	NA	73579354	73566452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_73568412_73579169
transcript_31279.known	chr15	+	1680	6	FSM	ENSMUSG00000059895.14	ENSMUST00000230177.2	1680	6	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	34.6028900527109	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTGTGAAGAGTGTTAT	NA	False	NA	20	True	AATAAA	-14	NA	73596646	73629076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_73596698_73622977_73623877_73625604_73625698_73627142_73627274_73627876_73627952_73628645
transcript_31280.known	chr15	+	3260	6	FSM	ENSMUSG00000059895.14	ENSMUST00000053232.8	3260	6	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	28.8124972885031	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGTGCTCTACTGCAAGT	NA	False	NA	NA	False	NA	NA	NA	73620222	73630615	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_73620315_73622977_73623877_73625604_73625698_73627142_73627274_73627876_73627952_73628645
transcript_31284.known	chr15	-	390	1	FSM	ENSMUSG00000083380.2	ENSMUST00000120938.2	390	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6372	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGGCAAGAATGACTATT	NA	False	NA	NA	False	NA	NA	NA	73681745	73681355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_73681400_73681700
transcript_31285.known	chr15	+	752	2	FSM	ENSMUSG00000034730.18	ENSMUST00000230935.2	752	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGGCACAGACGCGCTCGC	NA	False	NA	NA	False	NA	NA	NA	74459772	74460799	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_74460261_74460535
transcript_31286.known	chr15	-	3054	3	FSM	ENSMUSG00000022602.15	ENSMUST00000110009.4	3054	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	19	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGTATGTGCCATTTCT	NA	False	NA	0	True	AATAAA	-14	NA	74544419	74540931	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_74541843_74542028_74542166_74542413
transcript_31287.known	chr15	-	5853	2	FSM	ENSMUSG00000046380.4	ENSMUST00000050234.4	5853	2	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCCTTGTCATCTGTGAG	NA	False	NA	NA	False	AGTAAA	-41	NA	74581384	74574149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_74579714_74581095
transcript_31288.known	chr15	+	860	3	FSM	ENSMUSG00000022598.7	ENSMUST00000023265.5	860	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAACCTGTGTCCTTAAG	NA	False	NA	NA	False	AATAAA	-19	NA	74586687	74588918	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_74586756_74587869_74587978_74588234
transcript_31289.known	chr15	+	1784	2	FSM	ENSMUSG00000056665.3	ENSMUST00000070923.3	1784	2	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTGCACCTGGCCTGTCTT	4640	False	NA	NA	False	NA	NA	NA	74593052	74596488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_74593657_74595308
transcript_31291.known	chr15	-	513	3	FSM	ENSMUSG00000022595.8	ENSMUST00000023260.5	513	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	1.5	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGAGTCTCGTTTCTGG	NA	False	NA	NA	False	AATACA	-19	NA	74606178	74604095	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_74604389_74604815_74604936_74606078
transcript_31293.known	chr15	-	4023	4	FSM	ENSMUSG00000022594.15	ENSMUST00000023259.15	4023	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	0.471404520791032	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTCTTTCTCTCATTCCT	9940	False	NA	-4	True	AATAAA	-18	NA	74624895	74619700	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_74623277_74623391_74623494_74623703_74623887_74624733
transcript_31295.known	chr15	-	706	1	FSM	ENSMUSG00000022594.15	ENSMUST00000189696.2	706	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	9962	False	NA	NA	False	NA	NA	NA	74624873	74624167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_74624200_74624900
transcript_31296.known	chr15	-	744	3	FSM	ENSMUSG00000034634.8	ENSMUST00000040404.8	744	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGCTGTGTGGAGTCGT	1323	False	NA	NA	False	AATAAA	-14	NA	74635469	74633904	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_74634438_74634599_74634699_74635357
transcript_31298.known	chr15	-	791	4	FSM	ENSMUSG00000044678.12	ENSMUST00000060301.6	791	4	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_3	10.2740233382816	1023	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCTTGGTTTGACTTCTG	776	False	NA	-2	True	ATTAAA	-18	NA	74671835	74668722	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_74669121_74670383_74670483_74671267_74671345_74671618
transcript_31299.known	chr15	-	612	3	FSM	ENSMUSG00000044678.12	ENSMUST00000168815.8	612	3	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_2	7.5	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCTTGGTTTGACTTCTG	1229	False	NA	-2	True	ATTAAA	-18	NA	74671382	74668722	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_74669121_74670383_74670483_74671267
transcript_3130.known	chr1	+	2231	7	FSM	ENSMUSG00000026240.13	ENSMUST00000027446.11	2231	7	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_3	30.6743649757687	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAGAAAAAA	NA	False	NA	NA	False	AAAAAG	-12	NA	86514821	86534222	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_86514958_86516885_86517064_86520012_86520089_86524472_86524562_86526724_86526928_86528804_86528911_86532779
transcript_31300.known	chr15	-	535	4	FSM	ENSMUSG00000068349.13	ENSMUST00000185253.2	535	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGGTGCTTAAAGATGTCA	NA	False	NA	NA	False	NA	NA	NA	74690662	74685660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_74685749_74688230_74688339_74688921_74689068_74690469
transcript_31302.known	chr15	+	2068	5	FSM	ENSMUSG00000022587.15	ENSMUST00000188866.7	2068	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	238.900606947743	671	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCTGGCCCTTAGACTTT	7785	False	NA	NA	False	NA	NA	NA	74826899	74831752	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_74827185_74827415_74827567_74829625_74829727_74830117_74830238_74830341
transcript_31304.known	chr15	+	431	5	FSM	ENSMUSG00000022587.15	ENSMUST00000191145.7	431	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	290.246770007868	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAACTTCAGCGCAGCTG	8406	False	NA	NA	False	NA	NA	NA	74827520	74830459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_74827567_74829263_74829313_74829628_74829727_74830117_74830238_74830341
transcript_31306.known	chr15	+	815	1	FSM	ENSMUSG00000022587.15	ENSMUST00000191439.2	815	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAACAAAAAC	8417	False	NA	NA	False	NA	NA	NA	74827531	74828346	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_74827500_74828300
transcript_31307.known	chr15	+	1122	4	FSM	ENSMUSG00000022587.15	ENSMUST00000191436.7	1122	4	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_1	144.768781165001	1852	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTATGTCCTGGTTGT	8387	False	NA	27	True	AATAAA	-15	NA	74827501	74831180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_74827567_74829628_74829727_74830117_74830238_74830341
transcript_31308.known	chr15	+	1211	3	FSM	ENSMUSG00000022587.15	ENSMUST00000188503.2	1211	3	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_1	177	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTATGTCCTGGTTGT	8402	False	NA	27	True	AATAAA	-15	NA	74827516	74831180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_74827567_74829628_74829727_74830117
transcript_31309.known	chr15	-	862	4	FSM	ENSMUSG00000075602.11	ENSMUST00000186526.7	862	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	38.2738669184195	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATAAACCCTTTGTTCTCC	9611	False	NA	-25	True	NA	NA	NA	74869777	74866747	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_74867329_74868300_74868418_74869383_74869467_74869696
transcript_3131.known	chr1	-	1042	3	FSM	ENSMUSG00000026241.6	ENSMUST00000027449.6	1042	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTGTCTTTATTTATTC	NA	False	NA	NA	False	AAAAAG	-20	NA	86598293	86594012	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_86594521_86597365_86597677_86598070
transcript_31310.known	chr15	-	853	4	FSM	ENSMUSG00000075602.11	ENSMUST00000187171.2	853	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	37.3452361977624	358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGGTCCTGCAATGTTCC	9552	False	NA	-77	True	NA	NA	NA	74869836	74866799	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_74867329_74868300_74868418_74869383_74869482_74869727
transcript_31311.known	chr15	-	819	3	FSM	ENSMUSG00000075602.11	ENSMUST00000023248.13	819	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	8	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAAGTTCTCCATTTTTC	9905	False	NA	-4	True	AATAAA	-15	NA	74869483	74866726	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_74867329_74868300_74868418_74869383
transcript_31312.known	chr15	-	522	4	FSM	ENSMUSG00000079018.11	ENSMUST00000187347.7	522	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	10.2306728354819	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATATGTTATAGAAGGTC	9872	False	NA	NA	False	NA	NA	NA	74920637	74917172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_74917460_74919201_74919319_74920290_74920374_74920602
transcript_31313.known	chr15	-	844	4	FSM	ENSMUSG00000079018.11	ENSMUST00000065408.16	844	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	24.2257897474755	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGTTTTTCTTATGCTA	9830	False	NA	NA	False	AATAAA	-23	NA	74920679	74916861	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_74917460_74919201_74919319_74920290_74920374_74920633
transcript_31315.known	chr15	-	838	4	FSM	ENSMUSG00000079018.11	ENSMUST00000179762.8	838	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	10.2306728354819	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATCTCTGTTTTTCTTAT	9847	False	NA	NA	False	AATAAA	-19	NA	74920662	74916865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_74917460_74919201_74919319_74920290_74920389_74920633
transcript_31316.known	chr15	-	476	3	FSM	ENSMUSG00000099452.2	ENSMUST00000189781.2	476	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTTTGTGTGTATG	8377	False	NA	NA	False	ATTAAA	-16	NA	74950943	74948058	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_74948357_74949874_74949938_74950828
transcript_3132.known	chr1	+	3085	21	FSM	ENSMUSG00000053333.16	ENSMUST00000065694.8	3085	21	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_5	12.4998999996	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTGTCTGTGTAGATGCC	NA	False	NA	12	True	AATAAA	-13	NA	86631564	86977814	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_86631594_86672402_86672551_86673062_86673221_86681948_86682003_86688009_86688112_86748943_86749173_86782081_86782183_86784848_86785097_86806124_86806299_86858475_86858556_86887464_86887578_86901121_86901230_86917813_86918048_86948759_86948840_86971738_86971923_86972551_86972639_86974758_86974907_86975169_86975301_86975409_86975515_86976554_86976657_86977344
transcript_31320.known	chr15	-	822	4	FSM	ENSMUSG00000022584.15	ENSMUST00000100542.10	822	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	3.39934634239519	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAAATCTCTGTTTTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	74983819	74980009	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_74980601_74982359_74982477_74983446_74983530_74983788
transcript_31321.known	chr15	+	941	4	FSM	ENSMUSG00000022582.5	ENSMUST00000190262.2	941	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCCAAGATCTCTGTTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	75027088	75030975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_75027210_75027465_75027564_75028542_75028660_75030370
transcript_31323.nic	chr15	+	1304	5	NIC	ENSMUSG00000047728.14	novel	758	5	NA	NA	-48	-163	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	2.48746859276655	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGAGATGTTTTTCTTTT	1182	False	NA	NA	False	NA	NA	NA	75088176	75094347	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_+_75088262_75088532_75088604_75089563_75089681_75092469_75092640_75093486
transcript_31324.known	chr15	+	758	5	FSM	ENSMUSG00000047728.14	ENSMUST00000185307.7	758	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.73861278752583	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGGTATGTACTCATTACC	1230	False	NA	NA	False	NA	NA	NA	75088224	75093799	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_75088262_75088532_75088604_75089563_75089681_75092469_75092690_75093486
transcript_31326.known	chr15	+	1498	5	FSM	ENSMUSG00000047728.14	ENSMUST00000229521.2	1498	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.73861278752583	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGCTTGAATAACTGTG	1232	False	NA	NA	False	NA	NA	NA	75088226	75094510	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_75088293_75088532_75088604_75089563_75089681_75092469_75092690_75093486
transcript_31329.nnic	chr15	-	873	4	NNC	ENSMUSG00000068348.5	novel	408	3	NA	NA	-300	386	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	34.9221356098901	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAAGTCTCTGTTTTTCT	1052	False	NA	-5	True	AATAAA	-16	NA	75110917	75107059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_75107668_75109440_75109558_75110548_75110631_75110851
transcript_31330.nnic	chr15	-	917	4	NNC	ENSMUSG00000068348.5	novel	408	3	NA	NA	-375	386	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	32.5678778348646	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAAGTCTCTGTTTTTCT	977	False	NA	-5	True	AATAAA	-16	NA	75110992	75107059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_75107668_75109440_75109558_75110548_75110631_75110882
transcript_31336.nnic	chr15	-	984	3	Fusion	ENSMUSG00000068348.5_ENSMUSG00000099467.2	novel	408	3	NA	NA	-189	386	multi-exon	FALSE	canonical	0	0	junction_2	38	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAAGTCTCTGTTTTTCT	NA	False	NA	-5	True	AATAAA	-16	NA	75169137	75107059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr15_-_75107668_75109440_75109558_75168878
transcript_31337.nnic	chr15	-	978	3	Fusion	ENSMUSG00000068348.5_ENSMUSG00000101289.2	novel	408	3	NA	NA	-183	386	multi-exon	FALSE	canonical	0	0	junction_2	38	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAAGTCTCTGTTTTTCT	NA	False	NA	-5	True	AATAAA	-16	NA	75186996	75107059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr15_-_75107668_75109440_75109558_75186743
transcript_31339.nnic	chr15	-	977	3	Fusion	ENSMUSG00000068348.5_ENSMUSG00000053168.7	novel	408	3	NA	NA	106	386	multi-exon	FALSE	canonical	1	8	junction_2	34	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAAGTCTCTGTTTTTCT	NA	False	NA	-5	True	AATAAA	-16	NA	75303467	75107059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr15_-_75107668_75109440_75109558_75303215
transcript_3134.known	chr1	+	1173	4	FSM	ENSMUSG00000053333.16	ENSMUST00000188121.7	1173	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	49.2769948578667	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACTTTTCTTTATAACC	NA	False	NA	NA	False	AATAAA	-15	NA	86631529	86676053	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_86631594_86672402_86672551_86673062_86673221_86675250
transcript_31340.known	chr15	-	408	3	FSM	ENSMUSG00000068348.5	ENSMUST00000089689.5	408	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	2	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGGTCCTTCCAACAACC	1352	False	NA	NA	False	NA	NA	NA	75110617	75107445	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_75107668_75109440_75109558_75110548
transcript_31341.nnic	chr15	+	912	4	NNC	ENSMUSG00000022583.13	novel	818	3	NA	NA	-65	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	3.74165738677394	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCAAGATCTCAGTTTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	75140204	75144084	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_75140299_75140550_75140649_75141628_75141746_75143481
transcript_31342.nnic	chr15	+	949	4	NNC	ENSMUSG00000022583.13	novel	818	3	NA	NA	-36	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4.89897948556636	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCAAGATCTCAGTTTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	75140233	75144084	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_75140365_75140550_75140649_75141628_75141746_75143481
transcript_31343.known	chr15	+	877	4	FSM	ENSMUSG00000022583.13	ENSMUST00000023247.13	877	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.89897948556636	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCAAGATCTCAGTTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	75140269	75144083	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_75140330_75140550_75140649_75141628_75141746_75143481
transcript_31344.known	chr15	+	818	3	FSM	ENSMUSG00000022583.13	ENSMUST00000189654.2	818	3	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	3	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCAAGATCTCAGTTTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	75140550	75144084	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_75140649_75141628_75141746_75143481
transcript_31345.known	chr15	-	525	4	FSM	ENSMUSG00000053168.7	ENSMUST00000227495.2	525	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	8.01387685344754	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTGGGGGACTTTATAAC	NA	False	NA	NA	False	NA	NA	NA	75303573	75299713	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_75300028_75301766_75301878_75303215_75303299_75303556
transcript_31347.known	chr15	+	3540	3	FSM	ENSMUSG00000047003.16	ENSMUST00000161785.8	3540	3	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGTGCTCTGTTGGGTT	NA	False	NA	17	True	AGTAAA	-17	NA	75488527	75497149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_75488670_75489892_75491541_75495399
transcript_31349.known	chr15	+	1459	3	FSM	ENSMUSG00000099034.8	ENSMUST00000183928.8	1459	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGATGGAGTCTGTGGTCT	NA	False	NA	NA	False	AATAAA	-17	NA	75513977	75519286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_75514361_75517197_75517294_75518306
transcript_31350.known	chr15	+	530	2	FSM	ENSMUSG00000099034.8	ENSMUST00000184602.2	530	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGTTTGTCTTCTTTTG	NA	False	NA	NA	False	TTTAAA	-17	NA	75514323	75516328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_75514361_75515835
transcript_31352.known	chr15	-	1903	14	FSM	ENSMUSG00000000934.10	ENSMUST00000000958.9	1903	14	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_8	11.6872458678823	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTTTGTCACTGTGAC	NA	False	NA	-7	True	AATAAA	-11	NA	75550649	75528883	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_75529064_75529532_75529680_75535204_75535300_75535863_75535992_75537435_75537551_75538101_75538171_75539268_75539455_75539670_75539815_75540474_75540620_75541135_75541324_75541910_75542034_75546140_75546263_75547867_75547981_75550501
transcript_31355.nic	chr15	+	921	5	ISM	ENSMUSG00000022580.14	ENSMUST00000023244.6	1932	15	7826	-183	-368	0	3prime_fragment	FALSE	canonical	0	0	junction_2	3.96074487943871	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGAGTCTGAGTCGGGTAC	NA	False	NA	NA	False	ATTAAA	-17	NA	75584068	75586257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_+_75584301_75584850_75584874_75585067_75585215_75585298_75585461_75585900
transcript_31356.known	chr15	+	2605	14	FSM	ENSMUSG00000022580.14	ENSMUST00000124749.8	2605	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	2.64910390118809	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTCTGAGTCGGGTACTG	NA	False	NA	NA	False	ATTAAA	-19	NA	75576156	75586259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_75576324_75580019_75580136_75580837_75580967_75581085_75581162_75581862_75581941_75582303_75582429_75582514_75582682_75582846_75583031_75583402_75583560_75583639_75584301_75584850_75584928_75585067_75585215_75585298_75585461_75585900
transcript_31357.known	chr15	-	3362	12	FSM	ENSMUSG00000075600.4	ENSMUST00000100538.4	3362	12	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	44.618492997359	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGCCTGTCTTGACTACC	NA	False	NA	-1	True	AATAAA	-19	NA	75713764	75626278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_75626800_75628471_75628816_75629388_75629574_75648838_75648971_75650914_75650985_75651128_75651288_75651362_75651406_75657301_75657487_75681376_75681528_75709315_75709513_75711104_75712414_75713698
transcript_31364.known	chr15	+	1792	11	FSM	ENSMUSG00000022575.6	ENSMUST00000023238.6	1792	11	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	7.7614431647729	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTGTTGAGGGGTACTG	NA	False	NA	15	True	AATAAA	-20	NA	75734175	75739257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_75734331_75735253_75735478_75736092_75736286_75736797_75736967_75737271_75737375_75737608_75737660_75737935_75738026_75738144_75738321_75738394_75738540_75738638_75738713_75738845
transcript_31370.nnic	chr15	+	1650	10	NIC	ENSMUSG00000022575.6	novel	1792	11	NA	NA	-51	0	combination_of_known_splicesites	FALSE	canonical	2	7	junction_2	13.1740485635797	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTGTTGAGGGGTACTG	NA	False	NA	15	True	AATAAA	-20	NA	75734124	75739257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_+_75734331_75735253_75735478_75736797_75736967_75737271_75737375_75737608_75737660_75737935_75738026_75738144_75738321_75738394_75738540_75738638_75738713_75738845
transcript_31374.known	chr15	+	406	2	FSM	ENSMUSG00000022575.6	ENSMUST00000230881.2	406	2	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCTAACTGGGCATGTTC	NA	False	NA	NA	False	NA	NA	NA	75734212	75735541	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_75734331_75735253
transcript_31375.known	chr15	-	1898	13	FSM	ENSMUSG00000022574.8	ENSMUST00000023237.8	1898	13	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_8	7.1351049201972	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGTGTCGTTAGTTCAC	NA	False	NA	NA	False	CATAAA	-30	NA	75766330	75762804	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_75762910_75762997_75763106_75763195_75763351_75763428_75763532_75763632_75763714_75763811_75763897_75764190_75764332_75764405_75764603_75764953_75765070_75765154_75765286_75765401_75765485_75765568_75765697_75765865
transcript_31379.known	chr15	-	2152	10	FSM	ENSMUSG00000055762.17	ENSMUST00000089681.12	2152	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	1485.53617539091	3296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCCGCCTCTTGTGTTAC	NA	False	NA	-8	True	ATTAAA	-14	NA	75781184	75767338	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772539_75772612_75772980_75773105_75774527_75775658_75777734_75777750_75781093
transcript_3138.nnic	chr1	-	756	2	Genic_Genomic	ENSMUSG00000084106.5	novel	891	1	NA	NA	-21	51	multi-exon	FALSE	canonical	2	41	junction_1	0	1070	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCAGTTGAAGGGCATCT	NA	False	NA	NA	False	ATTAAA	-34	NA	86837426	86836463	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr1_-_86836834_86837040
transcript_31389.known	chr15	-	896	7	FSM	ENSMUSG00000055762.17	ENSMUST00000116440.9	896	7	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_6	1385.14264207297	9992	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCCTCTTGTGTTACTT	NA	False	NA	-6	True	ATTAAA	-16	NA	75781146	75767336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772980_75773102_75781093
transcript_3139.nnic	chr1	-	676	2	Genic_Genomic	ENSMUSG00000084106.5	novel	891	1	NA	NA	-21	51	multi-exon	FALSE	canonical	1	18	junction_1	0	1023	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCAGTTGAAGGGCATCT	NA	False	NA	NA	False	ATTAAA	-34	NA	86837426	86836463	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr1_-_86836834_86837120
transcript_31390.known	chr15	-	973	8	FSM	ENSMUSG00000055762.17	ENSMUST00000089680.10	973	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	1574.61569007443	3186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCCGCCTCTTGTGTTAC	NA	False	NA	-8	True	ATTAAA	-14	NA	75781168	75767338	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75769074_75769132_75772980_75773102_75781093
transcript_31391.known	chr15	-	704	5	FSM	ENSMUSG00000055762.17	ENSMUST00000151066.8	704	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	1645.62410273428	7536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCCTCTTGTGTTACTT	NA	False	NA	-6	True	ATTAAA	-16	NA	75781155	75767336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75772980_75773102_75781093
transcript_31392.known	chr15	-	793	3	FSM	ENSMUSG00000055762.17	ENSMUST00000134222.2	793	3	0	0	0	0	multi-exon	FALSE	canonical	3	3397	junction_1	15.5	1795	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCACTCCGCCTCTTGTGTT	NA	False	NA	-10	True	ATTAAA	-12	NA	75768589	75767340	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_75767441_75767580_75767776_75768091
transcript_31393.known	chr15	-	824	7	FSM	ENSMUSG00000055762.17	ENSMUST00000023235.13	824	7	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_6	1073.10918984665	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGTGTGGTGGAGGATGA	NA	False	NA	NA	False	NA	NA	NA	75781178	75767652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772539_75772612_75772980_75773102_75781093
transcript_31394.known	chr15	-	685	6	FSM	ENSMUSG00000055762.17	ENSMUST00000144614.8	685	6	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_5	1188.26007254304	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAATCCTCCATCCTTTTGG	NA	False	NA	NA	False	NA	NA	NA	75781405	75768122	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_75768314_75768488_75768590_75768668_75768769_75772539_75772612_75772980_75773105_75781308
transcript_31395.known	chr15	-	713	7	FSM	ENSMUSG00000055762.17	ENSMUST00000141268.8	713	7	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_3	1405.29918720376	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGGCCAAATCCTCCATC	NA	False	NA	NA	False	NA	NA	NA	75781168	75768129	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_75768314_75768488_75768590_75768668_75768769_75769074_75769132_75772539_75772612_75772980_75773105_75781093
transcript_3140.nnic	chr1	-	579	2	Genic_Genomic	ENSMUSG00000084106.5	novel	891	1	NA	NA	-21	51	multi-exon	FALSE	canonical	2	40	junction_1	0	1020	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCAGTTGAAGGGCATCT	NA	False	NA	NA	False	ATTAAA	-34	NA	86837426	86836463	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr1_-_86836834_86837217
transcript_31400.known	chr15	-	1339	6	FSM	ENSMUSG00000022571.10	ENSMUST00000053918.9	1339	6	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_1	15.2525407719501	1251	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTTGGACTTTAGTAGAG	NA	False	NA	-13	True	NA	NA	NA	75793409	75788325	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_75788929_75789085_75789179_75790100_75790314_75790521_75790702_75791077_75791143_75793224
transcript_31407.known	chr15	-	1405	11	FSM	ENSMUSG00000022570.8	ENSMUST00000229951.2	1405	11	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	184.382889661704	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCTGGGCCAGCCT	8946	False	NA	-22	True	AATAAA	-22	NA	75801575	75796524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798138_75798307_75798591_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801501
transcript_3141.nnic	chr1	-	822	2	Genic_Genomic	ENSMUSG00000084106.5	novel	891	1	NA	NA	-21	50	multi-exon	FALSE	canonical	0	0	junction_1	0	1048	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCACCAGTTGAAGGGCATC	NA	False	NA	NA	False	ATTAAA	-33	NA	86837426	86836464	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr1_-_86836834_86836973
transcript_31410.known	chr15	-	1319	11	FSM	ENSMUSG00000022570.8	ENSMUST00000230736.2	1319	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	183.950428104965	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCTGGGCCAGCCT	8894	False	NA	-22	True	AATAAA	-22	NA	75801627	75796524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798138_75798291_75798647_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801567
transcript_31414.known	chr15	-	1270	11	FSM	ENSMUSG00000022570.8	ENSMUST00000229085.2	1270	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	151.287309447951	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCTGGGCCAGCCT	8894	False	NA	-22	True	AATAAA	-22	NA	75801627	75796524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798945_75800277_75800362_75800740_75800899_75801567
transcript_31415.known	chr15	-	1335	11	FSM	ENSMUSG00000022570.8	ENSMUST00000023231.7	1335	11	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_10	87.2147349935778	638	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGGACTCAGAAGCTGGG	8919	False	NA	-29	True	AATAAA	-15	NA	75801602	75796531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801501
transcript_31416.known	chr15	-	1355	11	FSM	ENSMUSG00000022570.8	ENSMUST00000229641.2	1355	11	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_10	74.8304750753328	803	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCTGGGCCAGCCT	8840	False	NA	-22	True	AATAAA	-22	NA	75801681	75796524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801567
transcript_31423.known	chr15	-	1223	10	FSM	ENSMUSG00000022570.8	ENSMUST00000229289.2	1223	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	159.308071761587	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCTGGGCCAGCCT	8885	False	NA	-22	True	AATAAA	-22	NA	75801636	75796524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798973_75800740_75800899_75801567
transcript_31424.known	chr15	+	2486	2	FSM	ENSMUSG00000050846.10	ENSMUST00000037260.8	2486	2	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	0	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCTGTGTAATTGGCATA	NA	False	NA	10	True	AATAAA	-16	NA	75812800	75821249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_75813009_75818971
transcript_31427.known	chr15	+	1803	4	FSM	ENSMUSG00000034429.16	ENSMUST00000109966.8	1803	4	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_3	7.71722460186015	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAAGCCTGTTCTTCAGCC	NA	False	NA	11	True	AATAAA	-16	NA	75840971	75847598	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_75841254_75844930_75845058_75845390_75845505_75846318
transcript_31428.known	chr15	+	1703	4	FSM	ENSMUSG00000034429.16	ENSMUST00000109967.10	1703	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	16.779617264871	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGAGAAGCCTGTTCTTCA	NA	False	NA	8	True	AATAAA	-13	NA	75841027	75847595	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_75841254_75844971_75845058_75845390_75845505_75846318
transcript_31430.known	chr15	+	1644	4	FSM	ENSMUSG00000034429.16	ENSMUST00000147641.8	1644	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	16.3571255285137	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGGAGAAGCCTGTTCTT	NA	False	NA	6	True	AATAAA	-11	NA	75841155	75847593	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_75841254_75844900_75845058_75845390_75845505_75846318
transcript_31431.known	chr15	-	2458	2	FSM	ENSMUSG00000098176.3	ENSMUST00000183130.3	2458	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCCGTTGTCTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	75854291	75851720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_75853537_75853649
transcript_31432.known	chr15	-	2584	1	FSM	ENSMUSG00000098176.3	ENSMUST00000182172.2	2584	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCCGTTGTCTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	75854304	75851720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_75851700_75854300
transcript_31433.known	chr15	-	5440	36	FSM	ENSMUSG00000022568.18	ENSMUST00000063747.12	5440	36	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_30	52.1302607094253	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCCTTTTGTCCTGCC	NA	False	NA	-1	True	AATAAA	-21	NA	75941603	75919006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_75919387_75919469_75919522_75919963_75920002_75920070_75920214_75920290_75920477_75920558_75920707_75920782_75920943_75921051_75921151_75921898_75921962_75923250_75923326_75923469_75923527_75923602_75923714_75929235_75929425_75929493_75929788_75929874_75929986_75930810_75931069_75931146_75931228_75931331_75931656_75932415_75932494_75932982_75933073_75933587_75933651_75934518_75934897_75935439_75935605_75936324_75936451_75936545_75936677_75936758_75936926_75936998_75937199_75937938_75938058_75938458_75938604_75938668_75938744_75938842_75938907_75938993_75939051_75939138_75939229_75939325_75939405_75939509_75939628_75941077
transcript_31438.known	chr15	-	1008	1	FSM	ENSMUSG00000002524.18	ENSMUST00000228459.2	1008	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAATTCCTGC	NA	False	NA	NA	False	NA	NA	NA	75952731	75951723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_75951700_75952700
transcript_31439.known	chr15	-	1821	11	FSM	ENSMUSG00000002524.18	ENSMUST00000002599.11	1821	11	0	0	0	0	multi-exon	FALSE	canonical	3	1143	junction_7	140.604729650179	2300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGAAGTCCCTGTGTCT	NA	False	NA	-8	True	CATAAA	-17	NA	75952761	75942038	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449_75949552_75952698
transcript_3144.known	chr1	-	891	1	FSM	ENSMUSG00000084106.5	ENSMUST00000120149.2	891	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38647	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGTTAACCTAATTAAACA	NA	False	NA	NA	False	NA	NA	NA	86837405	86836514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_86836500_86837400
transcript_31440.known	chr15	-	1881	12	FSM	ENSMUSG00000002524.18	ENSMUST00000100527.13	1881	12	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_7	445.848082194703	846	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCTGTGTCTGAAATTGG	NA	False	NA	0	True	CATAAA	-25	NA	75952762	75942030	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75946455_75946507_75947390_75947481_75947585_75947682_75949449_75949552_75952698
transcript_31442.known	chr15	-	12332	3	FSM	ENSMUSG00000118671.1	ENSMUST00000239552.1	12332	3	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATTTGCTCTGCTGTCGC	9937	False	NA	0	True	AATAAA	-24	NA	76004395	75973329	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_75976552_75988902_75996926_76003308
transcript_31445.nic	chr15	+	1988	7	NIC	ENSMUSG00000022564.8	novel	1725	7	NA	NA	-41	0	intron_retention	FALSE	canonical	3	13	junction_1	29.8533452434099	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCTGCTTCTCCTTGTCT	NA	False	NA	13	True	AATAAA	-14	NA	76130922	76134104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_+_76131101_76131839_76132378_76132458_76132569_76132648_76132850_76132971_76133101_76133177_76133322_76133416
transcript_31446.known	chr15	+	1725	7	FSM	ENSMUSG00000022564.8	ENSMUST00000023225.8	1725	7	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	10.0567832276971	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCTGCTTCTCCTTGTCT	NA	False	NA	13	True	AATAAA	-14	NA	76130974	76134104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76131101_76132050_76132378_76132458_76132569_76132648_76132850_76132971_76133101_76133177_76133322_76133416
transcript_3145.known	chr1	-	2092	11	FSM	ENSMUSG00000026246.13	ENSMUST00000027455.13	2092	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAGTCGTATCAGTTTTGT	NA	False	NA	NA	False	AATAAA	-16	NA	87017633	87014415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_87015063_87015150_87015268_87015379_87015572_87015654_87015790_87015895_87015969_87016077_87016213_87016427_87016601_87016671_87016847_87016994_87017111_87017216_87017334_87017421
transcript_31455.known	chr15	+	1728	3	FSM	ENSMUSG00000034259.9	ENSMUST00000230512.2	1728	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	318	1563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCACTGGACTAATGTCTT	947	False	NA	4	True	NA	NA	NA	76211664	76214873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76211868_76213229_76213437_76213555
transcript_31457.known	chr15	+	1909	7	FSM	ENSMUSG00000071724.6	ENSMUST00000163991.4	1909	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.74535599249993	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAAGGCTCCCTCCCTCTC	6446	False	NA	NA	False	ATTAAA	-19	NA	76178547	76181096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76179492_76179589_76179663_76179883_76180025_76180094_76180185_76180277_76180342_76180425_76180562_76180635
transcript_31459.known	chr15	+	1796	3	FSM	ENSMUSG00000034259.9	ENSMUST00000059045.8	1796	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	330.5	453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGGACTAATGTCTTCTTT	879	False	NA	8	True	NA	NA	NA	76211596	76214877	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76211864_76213229_76213437_76213555
transcript_31460.known	chr15	-	3970	27	FSM	ENSMUSG00000022562.16	ENSMUST00000023222.13	3970	27	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_11	7.05305339056621	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTATTGGGTTATTGGGC	9183	False	NA	-19	True	AATAAA	-17	NA	76191445	76180802	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76180982_76181120_76181219_76181316_76181478_76181558_76181717_76181818_76181969_76182105_76182241_76182335_76182483_76182586_76182772_76185025_76185201_76185292_76185395_76185486_76185648_76186245_76186398_76186581_76186695_76186830_76186970_76187055_76187194_76187377_76187549_76187635_76187749_76188286_76188553_76188665_76188734_76188833_76188973_76189092_76189259_76189339_76189536_76189647_76189772_76189860_76189961_76190398_76190591_76190674_76190899_76191427
transcript_31463.known	chr15	+	2107	12	FSM	ENSMUSG00000022561.14	ENSMUST00000023221.13	2107	12	0	0	0	0	multi-exon	TRUE	non_canonical	3	197	junction_6	31.5777932223483	326	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCTGGCCCGCTGTCTTCT	4713	False	NA	24	True	AATAAA	-27	NA	76215430	76219107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76215664_76216095_76216276_76216359_76216472_76216683_76216832_76216909_76217012_76217102_76217300_76217376_76217574_76217663_76217818_76217994_76218091_76218213_76218405_76218489_76218661_76218781
transcript_3147.known	chr1	-	3033	18	FSM	ENSMUSG00000026247.14	ENSMUST00000161002.8	3033	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_17	3.6442114121726	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTGGCCTCCAGACAAGT	5684	False	NA	NA	False	AATAAA	-19	NA	87084243	87075376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_87075809_87075947_87076025_87076346_87076443_87076855_87076922_87077217_87077343_87077505_87077574_87078198_87078251_87078327_87078387_87078621_87078726_87078856_87078932_87079170_87079270_87079704_87079928_87080540_87080666_87080841_87080935_87081022_87081134_87081239_87081309_87081925_87082811_87083969
transcript_31471.known	chr15	+	747	1	FSM	ENSMUSG00000063875.7	ENSMUST00000074205.7	747	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	192	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGTCTTTAAGAGCAACAA	NA	False	NA	NA	False	NA	NA	NA	76221815	76222562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76221800_76222600
transcript_31473.known	chr15	+	1520	7	FSM	ENSMUSG00000022551.9	ENSMUST00000023210.8	1520	7	0	0	0	0	multi-exon	FALSE	canonical	3	4240	junction_5	258.32822575596	7311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACCCATGGTGTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	76227722	76230460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76227893_76228501_76228699_76228781_76228909_76229011_76229170_76229252_76229414_76229676_76229778_76229854
transcript_3149.nnic	chr1	-	763	4	NIC	ENSMUSG00000026247.14	novel	3033	18	NA	NA	-737	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_3	5.09901951359278	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTGGCCTCCAGACAAGT	NA	False	NA	NA	False	AATAAA	-19	NA	87077375	87075376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_87075809_87075947_87076025_87076346_87076443_87077217
transcript_31500.known	chr15	+	1791	6	FSM	ENSMUSG00000022551.9	ENSMUST00000229710.2	1791	6	0	0	0	0	multi-exon	FALSE	canonical	3	4240	junction_4	274.648866737149	704	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACACATTTTAGCTGGTCA	NA	False	NA	25	True	AATAAA	-15	NA	76227732	76230132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76228699_76228781_76228909_76229011_76229170_76229252_76229414_76229676_76229778_76229854
transcript_31501.known	chr15	+	737	5	FSM	ENSMUSG00000022551.9	ENSMUST00000229013.2	737	5	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_1	2002.74254149154	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGCCAGGCCATTGGCATG	NA	False	NA	NA	False	NA	NA	NA	76227760	76229353	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76227893_76228479_76228699_76228781_76228909_76229011_76229170_76229252
transcript_31507.known	chr15	-	1734	9	FSM	ENSMUSG00000022552.17	ENSMUST00000023211.16	1734	9	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_7	14.1862609591111	531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTTCTGTTCTTGGA	8113	False	NA	-3	True	ATTAAA	-16	NA	76235311	76231239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76231386_76231458_76231588_76231681_76231795_76231863_76232018_76232095_76232205_76232285_76232428_76232500_76232636_76234254_76234430_76234680
transcript_3151.known	chr1	+	2180	13	FSM	ENSMUSG00000036480.10	ENSMUST00000044533.9	2180	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.986013297183269	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAAATCTGGAGCTTTCT	NA	False	NA	NA	False	AATAAA	-17	NA	87111034	87116127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_87111321_87111876_87111985_87112324_87112379_87112474_87112665_87113045_87113146_87113231_87113392_87113615_87113759_87113992_87114156_87114296_87114477_87114605_87114771_87114867_87114931_87115217_87115325_87115666
transcript_31513.nic	chr15	-	1568	8	NIC	ENSMUSG00000022552.17	novel	1734	9	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_7	47.1584389833563	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTTCTGTTCTTGGA	8104	False	NA	-3	True	ATTAAA	-16	NA	76235320	76231239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_76231386_76231458_76231588_76231681_76231795_76231863_76232018_76232095_76232205_76232285_76232428_76232500_76232636_76234680
transcript_3153.known	chr1	+	538	3	FSM	ENSMUSG00000026251.14	ENSMUST00000189970.2	538	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	1.5	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGTTGTTGTTTTGAGA	NA	False	NA	NA	False	NA	NA	NA	87118328	87119488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_87118465_87118696_87118852_87119241
transcript_31532.known	chr15	-	1896	7	FSM	ENSMUSG00000022552.17	ENSMUST00000123112.8	1896	7	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_5	16.0977914289162	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTTCTGTTCTTGGA	8114	False	NA	-3	True	ATTAAA	-16	NA	76235310	76231239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76231386_76231458_76232018_76232095_76232205_76232285_76232428_76232500_76232636_76234254_76234430_76234680
transcript_31533.known	chr15	-	1669	6	FSM	ENSMUSG00000022552.17	ENSMUST00000144816.9	1669	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_5	53.2450936706848	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGTGTTCTGTTCTTGG	8149	False	NA	-4	True	ATTAAA	-15	NA	76235275	76231240	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76231386_76231458_76231588_76231681_76232205_76232285_76232428_76232500_76232636_76234680
transcript_31537.known	chr15	+	1743	9	FSM	ENSMUSG00000022553.17	ENSMUST00000161527.8	1743	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	277.590075471008	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGGAACCTGGGAGTTTG	NA	False	NA	23	True	AATAAA	-15	NA	76235493	76238572	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76235860_76236195_76236242_76236619_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
transcript_31544.known	chr15	+	1686	8	FSM	ENSMUSG00000022553.17	ENSMUST00000023212.15	1686	8	0	0	0	0	multi-exon	FALSE	canonical	3	425	junction_1	86.5157765487702	812	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGAACCTGGGAGTTTGT	NA	False	NA	24	True	AATAAA	-16	NA	76235505	76238573	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76235860_76236619_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
transcript_31550.known	chr15	+	1651	8	FSM	ENSMUSG00000022553.17	ENSMUST00000160853.8	1651	8	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_1	163.413086179455	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGAACCTGGGAGTTTGT	NA	False	NA	24	True	AATAAA	-16	NA	76235493	76238573	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76235860_76236666_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
transcript_31551.known	chr15	+	1537	7	FSM	ENSMUSG00000022553.17	ENSMUST00000160172.8	1537	7	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_6	244.747999651342	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGGAGTTTGTGGGGGCG	NA	False	NA	31	True	AATAAA	-23	NA	76235526	76238580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76235860_76236619_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76238046
transcript_31559.known	chr15	+	1993	6	FSM	ENSMUSG00000022554.8	ENSMUST00000023213.8	1993	6	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	14.4858551697855	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGACTCTCCTGCAAGAG	3544	False	NA	NA	False	NA	NA	NA	76253097	76255637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76253770_76253851_76253953_76254055_76254155_76254361_76254454_76254531_76254655_76254731
transcript_31568.known	chr15	-	2491	16	FSM	ENSMUSG00000022557.12	ENSMUST00000023217.11	2491	16	0	0	0	0	multi-exon	FALSE	canonical	3	559	junction_11	43.9047453775405	734	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTGGCTGGCAGCAGAGT	NA	False	NA	-34	True	AATAAA	-20	NA	76361477	76337188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76337579_76337662_76337771_76337843_76337929_76338016_76338306_76338377_76338559_76338651_76338785_76338873_76338944_76339017_76339099_76339169_76339332_76339407_76339621_76339695_76339798_76339881_76340000_76340071_76340227_76350971_76351053_76358947_76359122_76361328
transcript_31573.known	chr15	+	2102	13	FSM	ENSMUSG00000022556.12	ENSMUST00000228371.2	2102	13	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_9	120.605071756263	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACATACATACATACATATA	7144	False	NA	12	True	NA	NA	NA	76361644	76385172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76361918_76380169_76380279_76380652_76380790_76381035_76381161_76381818_76381895_76381967_76382030_76382151_76382249_76382353_76382491_76382621_76382892_76383331_76383416_76384147_76384254_76384466_76384537_76384616
transcript_31574.known	chr15	+	2084	13	FSM	ENSMUSG00000022556.12	ENSMUST00000227478.2	2084	13	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_11	40.4687808343941	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACATACATACATACATATA	7144	False	NA	12	True	NA	NA	NA	76361644	76385172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76361918_76380169_76380279_76380652_76380790_76381035_76381161_76381818_76381895_76381967_76382030_76382151_76382249_76382353_76382491_76382621_76382892_76384147_76384254_76384330_76384397_76384466_76384537_76384616
transcript_31575.nic	chr15	+	2235	12	NIC	ENSMUSG00000022556.12	novel	2084	13	NA	NA	-58	0	intron_retention	FALSE	canonical	3	226	junction_10	34.6941774713456	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACATACATACATACATATA	7063	False	NA	12	True	NA	NA	NA	76361563	76385172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_+_76361918_76380169_76380279_76380652_76380790_76381035_76381161_76381818_76381895_76381967_76382030_76382151_76382249_76382353_76382491_76382621_76382892_76384147_76384254_76384330_76384537_76384616
transcript_31576.known	chr15	+	2018	12	FSM	ENSMUSG00000022556.12	ENSMUST00000072838.6	2018	12	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_10	77.0148638653497	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACATACATACATACATATA	7144	False	NA	12	True	NA	NA	NA	76361644	76385172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76361918_76380169_76380279_76380652_76380790_76381035_76381161_76381818_76381895_76381967_76382030_76382151_76382249_76382353_76382491_76382621_76382892_76384147_76384254_76384466_76384537_76384616
transcript_31585.nic	chr15	-	1762	17	NIC	ENSMUSG00000022555.13	novel	1888	17	NA	NA	56	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_5	48.5218620185788	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCAGGGGTTGTGGAGGC	NA	False	NA	-5	True	AATAAA	-18	NA	76396095	76386214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_76386589_76386691_76386755_76386843_76386932_76387018_76387085_76387158_76387202_76387353_76387399_76387473_76387516_76387589_76387629_76387717_76387822_76387905_76387981_76388064_76388173_76388314_76388421_76388548_76388602_76388685_76388772_76388865_76388907_76390765_76390854_76395754
transcript_31588.known	chr15	-	1888	17	FSM	ENSMUSG00000022555.13	ENSMUST00000023214.11	1888	17	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_16	22.0368122411115	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCAGGGGTTGTGGAGGC	NA	False	NA	-5	True	AATAAA	-18	NA	76396151	76386214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76386589_76386691_76386755_76386843_76386932_76387018_76387085_76387158_76387272_76387353_76387399_76387473_76387516_76387589_76387629_76387717_76387822_76387905_76387981_76388064_76388173_76388314_76388421_76388548_76388602_76388685_76388772_76388865_76388907_76390765_76390854_76395754
transcript_31599.known	chr15	-	885	4	FSM	ENSMUSG00000022555.13	ENSMUST00000160294.8	885	4	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_3	11.0855260988773	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGCAGGGGTTGTGGAG	NA	False	NA	-7	True	AATAAA	-16	NA	76387380	76386216	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76386589_76386691_76386755_76386843_76386932_76387018
transcript_31600.known	chr15	-	1710	9	FSM	ENSMUSG00000022559.9	ENSMUST00000023219.9	1710	9	0	0	0	0	multi-exon	TRUE	canonical	3	128	junction_8	22.8988946239769	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTATTTATTATATGT	NA	False	NA	NA	False	AATAAA	-21	NA	76422935	76419920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76420164_76420424_76420672_76420772_76421005_76421092_76421207_76421289_76421398_76421488_76421621_76421922_76421987_76422116_76422276_76422524
transcript_31601.nnic	chr15	-	1547	9	NNC	ENSMUSG00000022559.9	novel	1710	9	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	1	5	junction_8	57.8916012906881	136	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTATTTATTATATGT	NA	False	NA	NA	False	AATAAA	-21	NA	76422946	76419920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_76420164_76420424_76420672_76420772_76421005_76421092_76421207_76421289_76421398_76421488_76421621_76421922_76421987_76422116_76422276_76422698
transcript_31602.nnic	chr15	-	1450	9	NNC	ENSMUSG00000022559.9	novel	1710	9	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_8	57.8916012906881	148	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTATTTATTATATGT	NA	False	NA	NA	False	AATAAA	-21	NA	76422948	76419920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_76420164_76420424_76420672_76420772_76421005_76421092_76421207_76421289_76421398_76421488_76421621_76421922_76421987_76422116_76422276_76422797
transcript_31604.known	chr15	-	2091	7	FSM	ENSMUSG00000022559.9	ENSMUST00000229813.2	2091	7	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_6	11.5325625946708	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGATTTATTTATTT	NA	False	NA	NA	False	AATAAA	-12	NA	76422946	76419929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76420164_76420424_76420672_76420772_76421005_76421092_76421207_76421289_76421398_76421488_76421621_76421922
transcript_31605.known	chr15	-	1953	8	FSM	ENSMUSG00000022559.9	ENSMUST00000230513.2	1953	8	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_7	19.025224930956	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGATTTATTTATTTATT	NA	False	NA	NA	False	AATAAA	-15	NA	76422935	76419926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76420164_76420424_76420672_76420772_76421005_76421092_76421207_76421289_76421398_76421488_76421621_76421922_76421987_76422116
transcript_31606.known	chr15	+	5289	5	FSM	ENSMUSG00000022560.10	ENSMUST00000023220.10	5289	5	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_4	5.2618912949623	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTCCTGTACTCTGAGTG	NA	False	NA	NA	False	NA	NA	NA	76423031	76428808	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76423396_76423582_76423803_76423893_76424780_76424871_76424996_76425113
transcript_31608.nic	chr15	+	2213	4	ISM	ENSMUSG00000022560.10	ENSMUST00000023220.10	5289	5	-24	3218	-24	-740	intron_retention	FALSE	canonical	3	120	junction_1	1.69967317119759	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTTGTTAATCCCATGAG	NA	False	NA	5	True	AATAAA	-15	NA	76423007	76425590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_+_76423396_76423582_76423803_76423893_76424780_76424871
transcript_31610.known	chr15	+	2889	3	FSM	ENSMUSG00000022560.10	ENSMUST00000230994.2	2889	3	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_1	0.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCCACAATGTGTCCCTT	NA	False	NA	NA	False	AATAAA	-20	NA	76423163	76426330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76423396_76423582_76423803_76423893
transcript_31612.known	chr15	-	4410	37	FSM	ENSMUSG00000034022.9	ENSMUST00000230157.2	4410	37	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	98.8724822532214	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACGAGTGTGTGGTCATTG	NA	False	NA	-5	True	TATAAA	-24	NA	76491711	76480008	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76480108_76480208_76480348_76480419_76480550_76480615_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
transcript_31613.known	chr15	-	4518	37	FSM	ENSMUSG00000034022.9	ENSMUST00000071898.7	4518	37	0	0	0	0	multi-exon	TRUE	canonical	3	484	junction_25	49.8187687746518	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTGTGTGGTCATTGTGT	NA	False	NA	-2	True	TATAAA	-27	NA	76491791	76480005	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76480133_76480208_76480348_76480419_76480550_76480615_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
transcript_31615.known	chr15	+	2026	15	FSM	ENSMUSG00000022550.19	ENSMUST00000161732.8	2026	15	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_4	36.3298381892508	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGAAATCGTTTTCTTTG	3103	False	NA	NA	False	NA	NA	NA	76460558	76480008	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76460695_76471957_76472062_76473268_76473419_76477433_76477510_76477635_76477832_76477918_76478060_76478137_76478252_76478352_76478485_76478563_76478648_76478728_76478811_76478873_76478953_76479046_76479139_76479213_76479467_76479536_76479654_76479738
transcript_31620.nic	chr15	+	2111	14	NIC	ENSMUSG00000022550.19	novel	2040	15	NA	NA	-8	0	intron_retention	FALSE	canonical	3	116	junction_9	17.5296874138817	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTTCTTTGTGTTTTAT	3094	False	NA	NA	False	AAGAAA	-1	NA	76460549	76480016	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_+_76460695_76471957_76472062_76473268_76473419_76477433_76477510_76477630_76477832_76477918_76478060_76478137_76478252_76478352_76478485_76478563_76478648_76478728_76478953_76479046_76479139_76479213_76479467_76479536_76479654_76479738
transcript_31637.known	chr15	+	747	4	FSM	ENSMUSG00000022550.19	ENSMUST00000159949.8	747	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	73.1619208787376	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTGTTGTTGTTGTCCTTT	3149	False	NA	NA	False	NA	NA	NA	76460604	76476023	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76460695_76471957_76472062_76473268_76473419_76475620
transcript_31640.known	chr15	-	2750	12	FSM	ENSMUSG00000063354.8	ENSMUST00000230977.2	2750	12	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_11	41.2272476696326	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCCAACTACACTGTCTT	8130	False	NA	-10	True	AATAAA	-13	NA	76501584	76496590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76497986_76498146_76498256_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500074_76500360_76500772
transcript_31641.nnic	chr15	-	1983	11	NIC	ENSMUSG00000063354.8	novel	2750	12	NA	NA	-46	0	combination_of_known_splicesites	FALSE	canonical	3	32	junction_10	121.107555503362	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACACTGTCTTCTTGTAGA	8620	False	NA	-2	True	AATAAA	-21	NA	76501094	76496582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76497986_76498146_76498256_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500772
transcript_31642.known	chr15	-	2063	11	FSM	ENSMUSG00000063354.8	ENSMUST00000073428.7	2063	11	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_5	124.203099800287	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACACTGTCTTCTTGTAGA	8666	False	NA	-2	True	AATAAA	-21	NA	76501048	76496582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76498256_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500074_76500360_76500772
transcript_31644.nnic	chr15	-	2026	10	NIC	ENSMUSG00000063354.8	novel	2750	12	NA	NA	251	0	combination_of_known_splicesites	FALSE	canonical	3	43	junction_9	124.308258816044	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACACTGTCTTCTTGTAGA	8381	False	NA	-2	True	AATAAA	-21	NA	76501333	76496582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76497986_76498146_76498256_76498430_76498686_76498859_76498949_76499114_76500772
transcript_31650.known	chr15	-	4235	26	FSM	ENSMUSG00000059323.15	ENSMUST00000168185.8	4235	26	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_21	25.6881606970994	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGTCAGCTCTCTGCG	NA	False	NA	-1	True	AATAAA	-16	NA	76524158	76510437	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76510683_76512948_76513083_76513456_76513531_76513865_76514042_76514676_76514849_76515030_76515333_76515993_76516073_76516160_76516312_76516806_76516884_76516972_76517704_76517785_76517910_76517990_76518155_76518244_76518318_76518764_76518855_76518968_76519052_76520315_76520506_76520761_76520888_76521140_76521294_76521379_76521526_76522051_76522167_76522241_76522414_76522671_76522802_76523039_76523224_76523647_76523791_76523877_76523974_76524053
transcript_31659.known	chr15	-	911	10	FSM	ENSMUSG00000115987.2	ENSMUST00000078803.5	911	10	0	0	0	0	multi-exon	FALSE	canonical	3	892	junction_9	85.8889607589177	4128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGTGGGCAGCTATACT	9603	False	NA	-25	True	AATAAA	-17	NA	76510274	76506308	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76507473_76507588_76507695_76508285_76508376_76508647_76508686_76508791_76508821_76509333_76509406_76510188
transcript_31660.known	chr15	-	941	10	FSM	ENSMUSG00000115987.2	ENSMUST00000229019.2	941	10	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_8	311.796586112021	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGTGGGCAGCTATACT	9671	False	NA	-25	True	AATAAA	-17	NA	76510206	76506308	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76507473_76507588_76507695_76508285_76508376_76508647_76508686_76508791_76508919_76509333_76509406_76510188
transcript_31661.known	chr15	-	1631	8	FSM	ENSMUSG00000115987.2	ENSMUST00000229261.2	1631	8	0	0	0	0	multi-exon	TRUE	canonical	3	892	junction_7	94.9343489588721	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGGGCAGCTATACTG	9591	False	NA	-24	True	AATAAA	-18	NA	76510286	76506307	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76508376_76508647_76508686_76508791_76508821_76509333_76509406_76510188
transcript_31664.known	chr15	-	1513	4	FSM	ENSMUSG00000053929.18	ENSMUST00000229524.2	1513	4	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_1	282.269768523344	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTGGCTTTTCTGGCAG	NA	False	NA	-65	True	NA	NA	NA	76540916	76531190	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76531896_76532298_76532511_76533140_76533380_76540559
transcript_31665.known	chr15	-	1854	4	FSM	ENSMUSG00000053929.18	ENSMUST00000176274.2	1854	4	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_1	196.445638508186	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTCTGTGTGTCTGCTT	NA	False	NA	-1	True	AATAAA	-24	NA	76541120	76531126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76531969_76532298_76532511_76533140_76533380_76540559
transcript_31670.nnic	chr15	-	1074	3	NNC	ENSMUSG00000053929.18	novel	1168	3	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	35	104	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAATTTGTTTATTCTTGA	NA	False	NA	NA	False	AATAAA	-22	NA	76543970	76542332	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_76543066_76543418_76543495_76543705
transcript_31673.nnic	chr15	-	1283	3	NNC	ENSMUSG00000053929.18	novel	1110	3	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	39.5	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAATTTGTTTATTCTTGA	NA	False	NA	NA	False	AATAAA	-22	NA	76544335	76542332	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_76543066_76543418_76543640_76544006
transcript_31674.known	chr15	-	1110	3	FSM	ENSMUSG00000053929.18	ENSMUST00000177359.2	1110	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	30	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGTATGGAATTTGTTTA	NA	False	NA	NA	False	AATAAA	-15	NA	76544317	76542339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76543066_76543418_76543640_76544154
transcript_31675.nnic	chr15	-	1085	3	NNC	ENSMUSG00000053929.18	novel	1110	3	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	38.5	99	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAATTTGTTTATTCTTGA	NA	False	NA	NA	False	AATAAA	-22	NA	76544335	76542332	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_76543066_76543418_76543640_76544204
transcript_31677.known	chr15	-	1168	3	FSM	ENSMUSG00000053929.18	ENSMUST00000066677.10	1168	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	38.5	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGTATGGAATTTGTTTAT	NA	False	NA	NA	False	AATAAA	-16	NA	76544308	76542338	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76543066_76543418_76543706_76544154
transcript_31678.known	chr15	-	1271	2	FSM	ENSMUSG00000053929.18	ENSMUST00000231152.2	1271	2	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	0	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAATTTGTTTATTCTTGA	NA	False	NA	NA	False	AATAAA	-22	NA	76543956	76542332	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76543066_76543418
transcript_31679.known	chr15	-	1601	1	FSM	ENSMUSG00000053929.18	ENSMUST00000230719.2	1601	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAATTTGTTTATTCTTGA	NA	False	NA	NA	False	AATAAA	-22	NA	76543933	76542332	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76542300_76543900
transcript_31685.known	chr15	+	2827	12	FSM	ENSMUSG00000033819.17	ENSMUST00000135388.3	2827	12	0	0	0	0	multi-exon	TRUE	canonical	3	37	junction_1	32.5360575565374	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTCCCATGTGTCTCACT	NA	False	NA	22	True	GATAAA	-17	NA	76555846	76579119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76555963_76573527_76573695_76574371_76575353_76575896_76575968_76576054_76576201_76577036_76577141_76577213_76577339_76577426_76577553_76577638_76577715_76577794_76577925_76578067_76578231_76578497
transcript_31686.known	chr15	+	2692	11	FSM	ENSMUSG00000033819.17	ENSMUST00000037551.15	2692	11	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_1	16.1864140562386	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTCCCATGTGTCTCACT	NA	False	NA	22	True	GATAAA	-17	NA	76555814	76579119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76555963_76574371_76575353_76575896_76575968_76576054_76576201_76577036_76577141_76577213_76577339_76577426_76577553_76577638_76577715_76577794_76577925_76578067_76578231_76578497
transcript_31688.known	chr15	+	982	6	FSM	ENSMUSG00000022546.6	ENSMUST00000229140.2	982	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	4.40908153700972	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGGTGGCTGCCTGGGT	5989	False	NA	2	True	AATAAA	-18	NA	76582410	76583848	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76582583_76582655_76582793_76582914_76583090_76583195_76583352_76583435_76583549_76583619
transcript_31701.known	chr15	+	2246	5	FSM	ENSMUSG00000019080.9	ENSMUST00000019224.9	2246	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	6.01560470775798	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGAGTCTGCCCAGGTT	9243	False	NA	NA	False	NA	NA	NA	76585664	76588439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76586551_76586843_76586992_76587078_76587204_76587273_76587384_76587462
transcript_31704.nnic	chr15	+	789	5	NNC	ENSMUSG00000019080.9	novel	2246	5	NA	NA	-16	84	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	24.9537071394212	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCAGTTTGGATCTTCT	9227	False	NA	16	True	CATAAA	-19	NA	76585648	76587774	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_76585743_76586843_76586992_76587078_76587204_76587273_76587384_76587462
transcript_31706.nnic	chr15	+	914	5	NNC	ENSMUSG00000019080.9	novel	2246	5	NA	NA	-8	84	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	24.9537071394212	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCAGTTTGGATCTTCT	9235	False	NA	16	True	CATAAA	-19	NA	76585656	76587774	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_76585876_76586843_76586992_76587078_76587204_76587273_76587384_76587462
transcript_31713.known	chr15	+	299	2	FSM	ENSMUSG00000019080.9	ENSMUST00000230468.2	299	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTCTGGGACACAGGAAAT	NA	False	NA	4	True	AATAAA	-17	NA	76587298	76587690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76587384_76587476
transcript_31719.known	chr15	+	4849	4	FSM	ENSMUSG00000033728.15	ENSMUST00000127208.8	4849	4	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	34.1792659696229	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGGTTATTCTGGAATCA	NA	False	NA	NA	False	AATAAA	-17	NA	76594837	76601899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76595128_76597066_76597421_76597600_76598186_76598279
transcript_31723.known	chr15	+	1782	4	FSM	ENSMUSG00000033728.15	ENSMUST00000142610.8	1782	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	50.1752484354144	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGTGTGTCCTAATTGGA	NA	False	NA	NA	False	NA	NA	NA	76594842	76599252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76595128_76597066_76597421_76598015_76598186_76598279
transcript_31725.known	chr15	+	2093	4	FSM	ENSMUSG00000033728.15	ENSMUST00000036423.15	2093	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	47.8957200593122	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTTATGGGCTTTTTTGA	NA	False	NA	NA	False	NA	NA	NA	76594838	76599235	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76595037_76597066_76597421_76597600_76598186_76598279
transcript_31727.known	chr15	+	3943	3	FSM	ENSMUSG00000033728.15	ENSMUST00000142506.2	3943	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	41.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAACCAAAACAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	76594872	76600848	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76595128_76597066_76598186_76598279
transcript_31728.known	chr15	-	1754	3	FSM	ENSMUSG00000116138.2	ENSMUST00000036247.10	1754	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	1	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTATTGACTTTAAATGA	9309	False	NA	-4	True	ATTAAA	-23	NA	76608040	76605664	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76607184_76607370_76607420_76607854
transcript_31729.known	chr15	-	1904	6	FSM	ENSMUSG00000033707.10	ENSMUST00000049956.5	1904	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.4	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGTGTTGGGGCGGCCTA	9563	False	NA	NA	False	AGTAAA	-23	NA	76606373	76599475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76600507_76602122_76602292_76602421_76602701_76602851_76603100_76603995_76604125_76606325
transcript_31730.known	chr15	+	2832	4	FSM	ENSMUSG00000033728.15	ENSMUST00000137649.8	2832	4	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	33.8066397160216	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGCATTTCTAGTGTTGC	NA	False	NA	NA	False	NA	NA	NA	76594842	76599284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76595731_76597066_76597421_76597600_76598186_76598279
transcript_31733.known	chr15	-	542	3	FSM	ENSMUSG00000033697.17	ENSMUST00000176219.9	542	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	34	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCAGCCCATGTTTTAAAT	8233	False	NA	NA	False	AAGAAA	-1	NA	76702306	76642240	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76642501_76649684_76649852_76702191
transcript_31736.known	chr15	-	4036	4	FSM	ENSMUSG00000022526.9	ENSMUST00000080406.7	4036	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	4.24264068711928	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCAGTCTGTAGTGATGGT	NA	False	NA	NA	False	ATTAAA	-17	NA	76755635	76735808	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76738815_76754006_76754121_76754481_76754615_76754852
transcript_31742.known	chr15	+	2960	5	FSM	ENSMUSG00000033669.9	ENSMUST00000230106.2	2960	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	32.962099447699	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAAAGGTGTAGCCTGTAC	NA	False	NA	NA	False	AATAAA	-13	NA	76763508	76776589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76763798_76764938_76764983_76765311_76765439_76772430_76772548_76774206
transcript_31743.known	chr15	+	1384	5	FSM	ENSMUSG00000116024.2	ENSMUST00000230214.2	1384	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	41.8270247567288	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGGTAAAGCAACTATTAAA	NA	False	NA	NA	False	ATTAAA	-1	NA	76763633	76785483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76763798_76764938_76764983_76765311_76765439_76772430_76772548_76784551
transcript_31744.known	chr15	+	2772	5	FSM	ENSMUSG00000033669.9	ENSMUST00000023179.7	2772	5	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	13.4976849866931	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTAGCCTGTACTTTGAA	NA	False	NA	NA	False	AATAAA	-19	NA	76763458	76776595	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76763554_76764938_76764983_76765311_76765439_76772430_76772548_76774206
transcript_31748.known	chr15	+	920	2	FSM	ENSMUSG00000055041.9	ENSMUST00000109793.3	920	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAAGTAAACAGCTGGGCT	NA	False	NA	NA	False	NA	NA	NA	76784135	76785391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76784216_76784551
transcript_31749.known	chr15	+	1331	1	FSM	ENSMUSG00000055041.9	ENSMUST00000230815.2	1331	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	317	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATTAAAAACATGTTATTC	NA	False	NA	NA	False	ATTAAA	-13	NA	76784164	76785495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76784200_76785500
transcript_31750.known	chr15	+	1037	2	FSM	ENSMUSG00000055041.9	ENSMUST00000068407.6	1037	2	0	0	0	0	multi-exon	TRUE	canonical	3	114	junction_1	0	1965	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTTATTCTATTAGGGAA	NA	False	NA	NA	False	ATTAAA	-23	NA	76784109	76785505	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76784193_76784551
transcript_31779.known	chr15	+	1020	5	FSM	ENSMUSG00000003970.10	ENSMUST00000229183.2	1020	5	0	0	0	0	multi-exon	FALSE	canonical	3	10804	junction_2	302.309754225695	83034	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGCGTGTGTGAGCCTCT	NA	False	NA	34	True	AATAAA	-18	NA	76788301	76790514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320
transcript_31784.known	chr15	+	851	6	FSM	ENSMUSG00000003970.10	ENSMUST00000004072.10	851	6	0	0	0	0	multi-exon	FALSE	canonical	3	5295	junction_1	2369.37927736359	251013	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGCGTGTGTGAGCCTCT	NA	False	NA	34	True	AATAAA	-18	NA	76788277	76790514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76788310_76788502_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320
transcript_31788.known	chr15	-	2212	5	FSM	ENSMUSG00000054967.8	ENSMUST00000229055.2	2212	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	6.04152298679729	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGATGGCTCTGAGTTTGT	8485	False	NA	NA	False	ATTAAA	-24	NA	76809648	76794570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76796376_76801489_76801604_76801834_76801962_76802168_76802262_76809575
transcript_31790.known	chr15	+	1043	5	FSM	ENSMUSG00000063236.7	ENSMUST00000071792.7	1043	5	0	0	0	0	multi-exon	TRUE	canonical	1	74	junction_2	101.489839392917	1405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAGGATGGTGTGAGAGA	NA	False	NA	21	True	AATAAA	-13	NA	76832705	76834929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76832745_76832828_76833120_76833267_76833353_76833743_76833891_76834448
transcript_31792.known	chr15	+	1131	4	FSM	ENSMUSG00000063236.7	ENSMUST00000229229.2	1131	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	121.461470799957	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATGTGTGTGAGTGGTA	NA	False	NA	NA	False	NA	NA	NA	76832948	76835179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76833120_76833267_76833353_76833746_76833891_76834448
transcript_31798.known	chr15	+	595	2	FSM	ENSMUSG00000033576.13	ENSMUST00000139304.2	595	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTCACATACAGGGAGGT	NA	False	NA	NA	False	NA	NA	NA	76936950	76940244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_76937353_76940051
transcript_31799.known	chr15	-	1694	13	FSM	ENSMUSG00000033565.19	ENSMUST00000228087.2	1694	13	0	0	0	0	multi-exon	FALSE	canonical	2	23	junction_12	49.6258221314491	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCATTTCCACGTCTGTAT	NA	False	NA	NA	False	AAAAAG	-4	NA	77037954	76967999	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982273_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804_76997859_77001120_77001268_77016916_77017142_77037729
transcript_3180.known	chr1	+	1807	7	FSM	ENSMUSG00000026254.18	ENSMUST00000113233.8	1807	7	0	0	0	0	multi-exon	FALSE	canonical	3	965	junction_1	498.771713534581	3422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCTGGGTTGTCTGAATG	NA	False	NA	NA	False	ATTAAA	-14	NA	87141635	87156578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87155522
transcript_31804.nic	chr15	-	1258	10	ISM	ENSMUSG00000033565.19	ENSMUST00000228087.2	1694	13	39933	2	18959	0	3prime_fragment	FALSE	canonical	3	120	junction_5	25.9591321736663	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGCATTTCCACGTCTGT	NA	False	NA	NA	False	AAAAAG	-2	NA	76998021	76968001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982273_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804
transcript_31806.nic	chr15	-	1069	10	ISM	ENSMUSG00000033565.19	ENSMUST00000228087.2	1694	13	39933	191	18959	-83	3prime_fragment	FALSE	canonical	3	120	junction_5	25.9591321736663	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCCTTTAATTCTTTT	NA	False	NA	NA	False	TTTAAA	-1	NA	76998021	76968190	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982273_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804
transcript_31807.nnic	chr15	-	1017	9	NNC	ENSMUSG00000033565.19	novel	1694	13	NA	NA	-14595	0	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_8	64.6799814471216	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGCATTTCCACGTCTGT	NA	False	NA	NA	False	AAAAAG	-2	NA	76988495	76968001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982273_76983439_76983533_76983638_76983693_76987078_76987140_76988426
transcript_31808.nnic	chr15	-	828	9	NNC	ENSMUSG00000033565.19	novel	1694	13	NA	NA	-14595	-83	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_8	64.6799814471216	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCCTTTAATTCTTTT	NA	False	NA	NA	False	TTTAAA	-1	NA	76988495	76968190	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982273_76983439_76983533_76983638_76983693_76987078_76987140_76988426
transcript_3181.known	chr1	+	1119	7	FSM	ENSMUSG00000026254.18	ENSMUST00000113231.4	1119	7	0	0	0	0	multi-exon	FALSE	canonical	3	1076	junction_1	458.210801802935	8326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTCATGCTCTTGCTC	NA	False	NA	15	True	AATAAA	-15	NA	87142007	87155786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_87142218_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87155522
transcript_31813.known	chr15	-	2980	3	FSM	ENSMUSG00000022443.18	ENSMUST00000134878.2	2980	3	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_2	41.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAATCATCCCTA	NA	False	NA	NA	False	NA	NA	NA	77726305	77689745	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_77692225_77697079_77697432_77726156
transcript_31815.known	chr15	-	7433	41	FSM	ENSMUSG00000022443.18	ENSMUST00000016771.13	7433	41	0	0	0	0	multi-exon	TRUE	canonical	3	307	junction_27	78.3427565254121	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGGTGTCTGGGTGTTT	NA	False	NA	-2	True	AATAAA	-17	NA	77726375	77644786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_77646217_77647151_77647325_77647421_77647531_77647991_77648201_77648499_77648624_77648704_77648794_77649899_77650029_77650913_77651076_77651330_77651544_77651650_77651864_77652991_77653241_77653400_77653554_77653704_77653810_77653966_77654174_77655324_77655470_77656023_77656237_77657471_77657644_77658134_77658259_77658756_77658895_77659273_77659481_77660002_77660135_77661090_77661200_77661967_77662129_77664189_77664260_77665310_77665433_77665521_77665716_77667588_77667704_77669292_77669467_77670686_77670861_77671709_77671863_77673118_77673238_77674067_77674164_77674903_77675048_77675247_77675347_77675915_77675980_77676453_77676547_77680160_77680255_77681200_77681229_77692067_77692225_77697079_77697432_77726156
transcript_3182.known	chr1	+	1125	6	FSM	ENSMUSG00000026254.18	ENSMUST00000113232.8	1125	6	0	0	0	0	multi-exon	FALSE	canonical	3	965	junction_1	545.938677875089	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCCACCTTTGCATGTCTG	NA	False	NA	NA	False	AATAAA	-23	NA	87141635	87154329	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818
transcript_31825.known	chr15	-	1298	4	FSM	ENSMUSG00000005354.17	ENSMUST00000005487.12	1298	4	0	0	0	0	multi-exon	FALSE	canonical	3	1083	junction_2	92.120693778446	3778	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTGCTGTTCTGTGGGC	14	True	NA	-5	True	AATAAA	-19	NA	77813206	77799246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_77800058_77808742_77808867_77811891_77812155_77813106
transcript_31826.known	chr15	-	676	3	FSM	ENSMUSG00000005354.17	ENSMUST00000100486.6	676	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	642	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACGGGCTCACAACCAT	2724	False	NA	NA	False	NA	NA	NA	77813197	77810597	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_77810920_77811891_77812155_77813106
transcript_31828.known	chr15	-	1877	2	FSM	ENSMUSG00000016552.14	ENSMUST00000129045.2	1877	2	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAAGAAAGAAAGA	8698	False	NA	NA	False	NA	NA	NA	77840883	77836952	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_77837735_77839788
transcript_3183.known	chr1	+	1569	6	FSM	ENSMUSG00000026254.18	ENSMUST00000113230.8	1569	6	0	0	0	0	multi-exon	FALSE	canonical	3	1076	junction_1	501.781067797501	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTGACCCCACCTTTGC	NA	False	NA	NA	False	AATAAA	-16	NA	87141660	87154322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_87142218_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818
transcript_31835.known	chr15	-	1899	15	FSM	ENSMUSG00000016554.10	ENSMUST00000100484.6	1899	15	0	0	0	0	multi-exon	FALSE	canonical	3	1461	junction_9	114.082520258677	5962	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCGTCCTGTGCTCCCGTT	2745	False	NA	-11	True	AATAAA	-24	NA	77855013	77843197	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
transcript_3184.known	chr1	+	1854	4	FSM	ENSMUSG00000026255.16	ENSMUST00000027472.7	1854	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	0.942809041582063	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCAGTGTGCCTTTTTGGT	1408	False	NA	NA	False	AATAAA	-25	NA	87192084	87238561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_87192477_87217189_87217338_87225350_87225486_87237382
transcript_31841.nnic	chr15	+	801	5	Antisense	novelGene_ENSMUSG00000019146.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	3	junction_3	2.38484800354236	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCCAGAGTCTGTGTTTA	3836	False	NA	NA	False	NA	NA	NA	77885824	77936417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr15_+_77885969_77896575_77896681_77928329_77928410_77931221_77931384_77936107
transcript_31850.nnic	chr15	+	877	3	Antisense	novelGene_ENSMUSG00000019146.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_2	4	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGTTATTTATTGCATG	3836	False	NA	NA	False	NA	NA	NA	77885824	77921503	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr15_+_77885969_77896575_77896681_77920875
transcript_31856.known	chr15	-	1013	7	FSM	ENSMUSG00000016637.8	ENSMUST00000016781.8	1013	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	104.002270274366	825	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACGGCTTCTGTTCTTAGT	NA	False	NA	-2	True	AATAAA	-14	NA	78058307	78043662	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_78043909_78048389_78048500_78049346_78049465_78050173_78050234_78051269_78051330_78052112_78052193_78057968
transcript_3186.nnic	chr1	+	619	3	Intergenic	novelGene_5	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGAGGCAAAATTAGCATC	6998	False	NA	NA	False	NA	NA	NA	87221380	87235659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr1_+_87221702_87229288_87229376_87235448
transcript_3187.nic	chr1	+	1440	3	NIC	ENSMUSG00000026255.16	novel	353	2	NA	NA	-118	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	1.5	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATACCAGTGTGCCTTTTT	NA	False	NA	NA	False	AATAAA	-22	NA	87236829	87238558	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_87237219_87237382_87237569_87237693
transcript_31870.known	chr15	-	1144	2	FSM	ENSMUSG00000044986.11	ENSMUST00000058659.9	1144	2	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_1	0	1796	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTCTGCCTCCTTGCCC	8084	False	NA	-3	True	AATAAA	-17	NA	78290107	78283755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_78284231_78289438
transcript_31871.known	chr15	+	1279	3	FSM	ENSMUSG00000071711.13	ENSMUST00000167140.8	1279	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	6.5	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAACAAAAACATTTGTGG	NA	False	NA	NA	False	AATAAA	-6	NA	78290911	78298202	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_78290945_78294242_78294865_78297578
transcript_31872.known	chr15	+	1309	3	FSM	ENSMUSG00000071711.13	ENSMUST00000169133.8	1309	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	8	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAACAAAAACATTTGTGG	NA	False	NA	NA	False	AATAAA	-6	NA	78291000	78298202	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_78291064_78294242_78294865_78297578
transcript_31874.known	chr15	+	1753	3	FSM	ENSMUSG00000071711.13	ENSMUST00000043865.8	1753	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	8	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGTGGTTGTGAGAATG	NA	False	NA	NA	False	AATAAA	-17	NA	78290974	78298213	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_78291471_78294242_78294865_78297578
transcript_31876.known	chr15	+	522	2	FSM	ENSMUSG00000071711.13	ENSMUST00000229791.2	522	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCCGCCTTCTTCGACATC	NA	False	NA	NA	False	NA	NA	NA	78290615	78294435	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_78290945_78294242
transcript_31877.known	chr15	+	597	2	FSM	ENSMUSG00000071711.13	ENSMUST00000231159.2	597	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAGAACTTGGATGCCCG	NA	False	NA	NA	False	NA	NA	NA	78291000	78294776	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_78291064_78294242
transcript_31878.known	chr15	+	1311	2	FSM	ENSMUSG00000071711.13	ENSMUST00000229739.2	1311	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAACATTTGTGGTTGT	NA	False	NA	NA	False	AATAAA	-10	NA	78294181	78298206	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_78294865_78297578
transcript_31879.known	chr15	-	343	2	FSM	ENSMUSG00000115854.2	ENSMUST00000229780.2	343	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGATTTTGTAGCTCCA	6130	False	NA	NA	False	NA	NA	NA	78308393	78304695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_78304817_78308171
transcript_31880.known	chr15	+	1180	7	FSM	ENSMUSG00000033287.18	ENSMUST00000089414.12	1180	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	46.8923116180989	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGTTGTTGTGAGAATCA	NA	False	NA	NA	False	NA	NA	NA	78312827	78323109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_78313068_78314241_78314351_78317184_78317277_78318114_78318211_78319784_78319911_78321100_78321195_78322686
transcript_31881.known	chr15	+	1632	7	FSM	ENSMUSG00000033287.18	ENSMUST00000166142.11	1632	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	55.6339724349151	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTTTCTCTGGGCCACT	NA	False	NA	24	True	AATAAA	-31	NA	78312763	78323503	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_78313068_78314241_78314351_78317184_78317277_78318114_78318211_78319784_78319911_78321783_78321872_78322686
transcript_31882.known	chr15	+	986	6	FSM	ENSMUSG00000033287.18	ENSMUST00000159771.8	986	6	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_5	37.5819105421744	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCACCTCTTAGAGCCTC	NA	False	NA	NA	False	NA	NA	NA	78312861	78323043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_78313068_78314241_78314351_78317184_78317277_78318114_78318211_78319784_78319911_78322686
transcript_31883.known	chr15	-	2402	3	FSM	ENSMUSG00000022440.10	ENSMUST00000023075.9	2402	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	2.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGCCTGGTACTTTTTGC	NA	False	NA	NA	False	AATAAA	-22	NA	78413825	78407545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_78409599_78411427_78411669_78413717
transcript_31884.known	chr15	-	2191	3	FSM	ENSMUSG00000022440.10	ENSMUST00000147093.2	2191	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGCCTGGTACTTTTTGC	NA	False	NA	NA	False	AATAAA	-22	NA	78413825	78407545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_78409388_78411427_78411669_78413717
transcript_31885.known	chr15	-	3038	7	FSM	ENSMUSG00000033220.8	ENSMUST00000043214.8	3038	7	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	5.64702478203247	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGTGGAATTTTATTTC	NA	False	NA	NA	False	AATAAA	-20	NA	78456983	78443366	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_78445686_78446105_78446239_78449062_78449223_78449640_78449704_78450113_78450232_78454931_78455004_78456810
transcript_31888.known	chr15	-	394	2	FSM	ENSMUSG00000116097.2	ENSMUST00000229702.2	394	2	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	250	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCGCTGTGGTCGGAGTAT	2853	False	NA	-3	True	NA	NA	NA	78465816	78458610	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_78458873_78465684
transcript_3189.known	chr1	+	2765	22	FSM	ENSMUSG00000048000.16	ENSMUST00000173173.8	2765	22	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_11	42.804729854996	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGAAGGAATTGGAGCTGCA	NA	False	NA	33	True	AAGAAA	-6	NA	87254787	87361521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_87254815_87261991_87262057_87282125_87282209_87291825_87291956_87292905_87293002_87301718_87301834_87306693_87306806_87307689_87307731_87331388_87331569_87334723_87334924_87335014_87335178_87335259_87335446_87338383_87338581_87339429_87339590_87344539_87344707_87346809_87346902_87348006_87348115_87349212_87349314_87350902_87351004_87352786_87352949_87356291_87356451_87361401
transcript_31891.known	chr15	-	1865	8	FSM	ENSMUSG00000018169.13	ENSMUST00000018313.6	1865	8	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_5	11.4749060731561	361	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGTCCAGCTTCCTGCT	NA	False	NA	-4	True	ATTAAA	-17	NA	78657675	78640081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_78640845_78641496_78641583_78643392_78643559_78645005_78645092_78648514_78648669_78651017_78651121_78651341_78651391_78657217
transcript_31894.known	chr15	+	2560	3	FSM	ENSMUSG00000049521.3	ENSMUST00000059619.3	2560	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	1.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGACCTTGGGGAAAAGC	NA	False	NA	NA	False	AATAAA	-20	NA	78726823	78735097	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_78726926_78731294_78732020_78733364
transcript_31897.known	chr15	+	3034	17	FSM	ENSMUSG00000033128.10	ENSMUST00000041587.8	3034	17	0	0	0	0	multi-exon	TRUE	canonical	3	379	junction_6	54.6157028701453	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGCTGCTCTTGTCACCCT	NA	False	NA	18	True	AATAAA	-18	NA	78761389	78778785	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_78761818_78765237_78765323_78766327_78766404_78767467_78767567_78768284_78768409_78769455_78769557_78770063_78770145_78772310_78772449_78772617_78772700_78773202_78773311_78773915_78774069_78775636_78775702_78776113_78776287_78776652_78776841_78777366_78777537_78777738_78777850_78777933
transcript_31900.known	chr15	+	2665	17	FSM	ENSMUSG00000033128.10	ENSMUST00000230192.2	2665	17	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_10	123.234516649152	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATTAGCTGCTCTTGTCA	NA	False	NA	14	True	AATAAA	-14	NA	78761750	78778781	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_78761818_78765237_78765323_78766327_78766404_78767467_78767567_78768284_78768409_78769455_78769557_78770063_78770145_78772310_78772449_78772617_78772700_78773202_78773311_78773919_78774069_78775636_78775702_78776113_78776287_78776652_78776841_78777366_78777537_78777738_78777850_78777933
transcript_31908.nic	chr15	+	810	7	ISM	ENSMUSG00000033128.10	ENSMUST00000230192.2	2665	17	-38	8498	-38	1874	5prime_fragment	FALSE	canonical	3	379	junction_6	69.8866145187252	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAGAGGCTGATATTTAG	NA	False	NA	NA	False	AGTAAA	-13	NA	78761712	78770283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_+_78761818_78765237_78765323_78766327_78766404_78767467_78767567_78768284_78768409_78769455_78769557_78770063
transcript_31916.known	chr15	+	1917	18	FSM	ENSMUSG00000022436.17	ENSMUST00000061239.14	1917	18	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_17	114.986414121521	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTAACTGGCCAAACGAAAA	4398	False	NA	87	True	AATAAA	-20	NA	78783967	78796251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_78784162_78785345_78785389_78785598_78785704_78786754_78786832_78787053_78787166_78787258_78787336_78787752_78787898_78788469_78788539_78788663_78788755_78789229_78789376_78789970_78790083_78790455_78790538_78790622_78790704_78791413_78791531_78792160_78792259_78792552_78792713_78794207_78794294_78796129
transcript_31917.known	chr15	+	2375	18	FSM	ENSMUSG00000022436.17	ENSMUST00000001226.11	2375	18	0	0	0	0	multi-exon	FALSE	canonical	3	356	junction_17	50.4832700370451	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGAGTAACTGGCCAAACG	4533	False	NA	83	True	AATAAA	-16	NA	78784102	78796247	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_78784162_78785345_78785389_78785598_78785704_78786754_78786832_78787053_78787166_78787258_78787336_78787752_78787898_78788469_78788539_78788663_78788755_78789229_78789376_78789970_78790083_78790455_78790538_78790622_78790704_78791413_78791531_78792160_78792259_78792552_78792713_78794207_78794300_78795538
transcript_31918.known	chr15	+	1923	18	FSM	ENSMUSG00000022436.17	ENSMUST00000109698.9	1923	18	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_17	114.336569876277	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTAACTGGCCAAACGAAAA	4398	False	NA	87	True	AATAAA	-20	NA	78783967	78796251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_78784162_78785345_78785389_78785598_78785704_78786754_78786832_78787053_78787166_78787258_78787336_78787752_78787898_78788469_78788539_78788663_78788755_78789229_78789376_78789970_78790083_78790455_78790538_78790622_78790704_78791413_78791531_78792160_78792259_78792552_78792713_78794207_78794300_78796129
transcript_3193.nic	chr1	+	1100	5	ISM	ENSMUSG00000048000.16	ENSMUST00000173850.8	2520	9	-111	25034	-61	194	5prime_fragment	FALSE	canonical	3	140	junction_4	32.0078115465584	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAACAAACATTTA	NA	False	NA	NA	False	NA	NA	NA	87254658	87293571	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_87254815_87261991_87262057_87282125_87282209_87291825_87291956_87292905
transcript_31937.known	chr15	+	800	4	FSM	ENSMUSG00000068220.7	ENSMUST00000089377.6	800	4	0	0	0	0	multi-exon	FALSE	canonical	3	1912	junction_2	63.4367576584918	4966	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCATGATGACACATACTT	NA	False	NA	NA	False	AATAAA	-15	NA	78810924	78814665	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_78811005_78812169_78812250_78813832_78814005_78814197
transcript_31938.known	chr15	+	628	5	FSM	ENSMUSG00000068220.7	ENSMUST00000229159.2	628	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1006.87148509629	424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAATCCAGCCCTTTCATG	NA	False	NA	9	True	AATAAA	-20	NA	78810925	78814391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_78811005_78812169_78812250_78812764_78812868_78813832_78814005_78814197
transcript_31940.known	chr15	+	3721	6	FSM	ENSMUSG00000033099.11	ENSMUST00000138880.9	3721	6	0	0	0	0	multi-exon	FALSE	canonical	3	420	junction_1	39.9929993873928	1654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCCTGGCCACGTGTGAC	NA	False	NA	NA	False	AGTAAA	-12	NA	78819132	78827838	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_78819276_78820678_78820785_78821333_78821383_78822007_78822151_78824265_78824367_78824659
transcript_31943.known	chr15	+	742	5	FSM	ENSMUSG00000033099.11	ENSMUST00000041164.4	742	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	186.959053003592	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCAGTCTGTGCTTGTGCT	NA	False	NA	10	True	NA	NA	NA	78819194	78825064	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_78819276_78820678_78820785_78821333_78821383_78824265_78824367_78824659
transcript_31944.known	chr15	+	2570	14	FSM	ENSMUSG00000033088.20	ENSMUST00000109687.9	2570	14	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_8	26.3687999246734	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGCTCTGTGGATGCTG	NA	False	NA	9	True	AATAAA	-13	NA	78867240	78890064	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_78867409_78872091_78872149_78875016_78875086_78875184_78875275_78875528_78875639_78877103_78877633_78878241_78878353_78883996_78884145_78885720_78885824_78886247_78886408_78886484_78886599_78887905_78887993_78888644_78888806_78889401
transcript_31946.known	chr15	+	1660	8	FSM	ENSMUSG00000033088.20	ENSMUST00000130663.10	1660	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_7	63.6226118191786	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCATACAGAAATGGATTC	NA	False	NA	NA	False	AATAAA	-25	NA	78867276	78879059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_78867409_78872091_78872149_78875016_78875086_78875184_78875275_78875528_78875639_78877103_78877633_78878241_78878353_78878497
transcript_31947.nic	chr15	+	841	2	ISM	ENSMUSG00000033088.20	ENSMUST00000229943.2	762	5	-14	9496	-14	-4378	5prime_fragment	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCAGTGGTTCTCTTTTGGC	NA	False	NA	NA	False	NA	NA	NA	78832104	78833077	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_+_78832249_78832380
transcript_31948.known	chr15	-	1561	3	FSM	ENSMUSG00000115867.2	ENSMUST00000229708.2	1561	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	78909982	78899528	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_78899558_78900087_78901333_78909695
transcript_31949.known	chr15	+	2055	1	FSM	ENSMUSG00000096210.3	ENSMUST00000180086.3	2055	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	970	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGAGTGGTGCGTTTTTCT	1147	False	NA	21	True	AATAAA	-17	NA	78912649	78914704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_78912600_78914700
transcript_3195.known	chr1	+	3015	4	FSM	ENSMUSG00000048000.16	ENSMUST00000174583.8	3015	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_3	78.7922726047562	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCATTTCCTCGGATTAA	NA	False	NA	NA	False	NA	NA	NA	87254751	87285506	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_87254815_87261991_87262057_87282125_87282209_87282702
transcript_31953.known	chr15	+	2370	9	FSM	ENSMUSG00000006378.16	ENSMUST00000006544.9	2370	9	0	0	0	0	multi-exon	FALSE	canonical	3	1189	junction_6	75.224663508719	1990	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAAGTGAGGCACCTGCC	632	False	NA	NA	False	ATTAAA	-25	NA	78915073	78922553	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_78915321_78918130_78918262_78919159_78919262_78919456_78919604_78919976_78920132_78920219_78920303_78920466_78920639_78920952_78921075_78921342
transcript_31955.known	chr15	+	1736	9	FSM	ENSMUSG00000116378.2	ENSMUST00000171999.9	1736	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	429.346723959785	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGTACCTATACCTGACT	659	False	NA	NA	False	AATACA	-13	NA	78915100	78926731	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_78915321_78918130_78918262_78919159_78919262_78919456_78919604_78919976_78920132_78920219_78920303_78920466_78920639_78920952_78921075_78926127
transcript_31972.known	chr15	-	1904	8	FSM	ENSMUSG00000033055.13	ENSMUST00000040676.11	1904	8	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_6	6.03391773769796	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTTTTTTGTGTTTTTG	NA	False	NA	0	True	NA	NA	NA	78947085	78937293	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_78938285_78938695_78938804_78939491_78939617_78939694_78939743_78940213_78940286_78942154_78942254_78945363_78945412_78946672
transcript_31975.known	chr15	+	1942	13	FSM	ENSMUSG00000033047.6	ENSMUST00000040518.6	1942	13	0	0	0	0	multi-exon	FALSE	canonical	3	1651	junction_4	129.272537257102	3006	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTGGTCTCATTATTAT	NA	False	NA	30	True	AGTAAA	-20	NA	78959378	78978605	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_78959493_78959970_78960020_78961030_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
transcript_31977.known	chr15	-	1249	7	FSM	ENSMUSG00000033029.13	ENSMUST00000169604.8	1249	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	2.81365716935569	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGACATGTGCCACCTTG	3696	False	NA	NA	False	AATAAA	-16	NA	79025453	79018860	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_79019423_79019552_79019654_79019836_79019966_79020506_79020690_79023437_79023501_79025080_79025193_79025354
transcript_31978.known	chr15	-	691	6	FSM	ENSMUSG00000033029.13	ENSMUST00000190730.7	691	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	2.56124969497314	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGGCTTTGTCCTGTGGC	3715	False	NA	NA	False	GGGGCT	-19	NA	79025434	79019216	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_79019423_79019552_79019654_79019836_79019966_79023437_79023501_79025080_79025193_79025354
transcript_31988.known	chr15	+	700	3	FSM	ENSMUSG00000033039.11	ENSMUST00000230202.2	700	3	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_2	3.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTGCAGCAGGCCAGCAG	NA	False	NA	NA	False	NA	NA	NA	79015920	79017684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_79016089_79016252_79016300_79017199
transcript_31989.known	chr15	+	605	2	FSM	ENSMUSG00000033039.11	ENSMUST00000230779.2	605	2	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCTGCCAAGGGGGACGAT	NA	False	NA	NA	False	NA	NA	NA	79015885	79017390	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_79016300_79017199
transcript_31990.known	chr15	+	1580	3	FSM	ENSMUSG00000033039.11	ENSMUST00000229048.2	1580	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	3.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAACAAAGGAAAATGTT	6221	False	NA	NA	False	ACTAAA	-16	NA	78993353	79000484	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_78993630_78998854_78998904_78999229
transcript_31991.known	chr15	-	535	4	FSM	ENSMUSG00000033029.13	ENSMUST00000186053.7	535	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.49691252107735	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTCCCTATGTTCTGAT	3696	False	NA	NA	False	AATAAA	-14	NA	79025453	79021622	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_79021884_79023437_79023501_79025080_79025193_79025354
transcript_31992.known	chr15	+	452	5	FSM	ENSMUSG00000033020.8	ENSMUST00000040077.8	452	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	888.21224940889	513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGTTTTATATGTGTAAATA	NA	False	NA	-18	True	NA	NA	NA	79025550	79035928	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_79025635_79028793_79028864_79030252_79030339_79035535_79035608_79035788
transcript_31993.known	chr15	+	414	5	FSM	ENSMUSG00000033020.8	ENSMUST00000229973.2	414	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	890.483962517012	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGATCCCCATCATCATTC	NA	False	NA	NA	False	NA	NA	NA	79025565	79035794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_79025635_79028793_79028864_79030252_79030384_79035535_79035674_79035788
transcript_32.known	ERCC-00071	+	626	1	FSM	ERCC-00071A	DQ883654	626	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	609	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00071_+_0_600
transcript_3200.known	chr1	-	1270	3	FSM	ENSMUSG00000079436.4	ENSMUST00000113212.4	1270	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCTATTTTCCTTCACT	NA	False	NA	NA	False	ATTAAA	-17	NA	87322451	87314084	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_87314761_87316651_87317128_87322333
transcript_32002.nnic	chr15	+	431	2	NNC	ENSMUSG00000075555.13	novel	905	4	NA	NA	-138	-5850	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	0	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTGTTTTCCATTCGAAT	3754	False	NA	NA	False	AATAAA	-29	NA	79093372	79094518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_79093676_79094390
transcript_32004.known	chr15	+	2054	13	FSM	ENSMUSG00000068206.14	ENSMUST00000163571.8	2054	13	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	62.6245425798331	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCAGACCCTTTGCAGC	4174	False	NA	36	True	AATAAA	-36	NA	79113372	79133684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_79113621_79113949_79114054_79114743_79114856_79123783_79123913_79125426_79125494_79127167_79127258_79129054_79129109_79129489_79129553_79130177_79130312_79130607_79130701_79131464_79131516_79132351_79132497_79132920
transcript_32006.known	chr15	+	1977	13	FSM	ENSMUSG00000068206.14	ENSMUST00000018295.14	1977	13	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_9	26.1878894826512	585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGGGCTCCTTGCAATG	4383	False	NA	18	True	AATAAA	-18	NA	79113581	79133666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_79113771_79113949_79114054_79114743_79114856_79123783_79123913_79125426_79125494_79127167_79127258_79129054_79129109_79129489_79129553_79130177_79130312_79130607_79130701_79131464_79131516_79132351_79132497_79132920
transcript_32007.nnic	chr15	+	1874	13	NNC	ENSMUSG00000068206.14	novel	1977	13	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	66.6737496237379	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGGGCTCCTTGCAATG	4389	False	NA	18	True	AATAAA	-18	NA	79113587	79133666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_79113674_79113949_79114054_79114743_79114856_79123783_79123913_79125426_79125494_79127167_79127258_79129054_79129109_79129489_79129553_79130177_79130312_79130607_79130701_79131464_79131516_79132351_79132497_79132920
transcript_3201.known	chr1	+	478	3	FSM	ENSMUSG00000026258.6	ENSMUST00000027476.6	478	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.5	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGCTCTCCTTTGTCC	NA	False	NA	NA	False	AATAAA	-35	NA	87397992	87403204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_87398134_87402744_87402928_87403050
transcript_32015.known	chr15	-	3318	17	FSM	ENSMUSG00000042632.18	ENSMUST00000174021.8	3318	17	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_16	39.721638860324	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATTGTACAGTGTGTGC	NA	False	NA	-10	True	AATAAA	-16	NA	79212164	79170427	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79188504_79188670_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79211834
transcript_32017.nic	chr15	-	3035	17	NIC	ENSMUSG00000042632.18	novel	3318	17	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	79	junction_16	39.5790348543266	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATTGTACAGTGTGTGC	NA	False	NA	-10	True	AATAAA	-16	NA	79212456	79170427	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79188504_79188670_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79212409
transcript_32019.known	chr15	-	3365	16	FSM	ENSMUSG00000042632.18	ENSMUST00000166977.9	3365	16	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_8	51.9652020319581	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATTGTACAGTGTGTGC	NA	False	NA	-10	True	AATAAA	-16	NA	79212376	79170427	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79211834
transcript_3202.known	chr1	+	1596	3	FSM	ENSMUSG00000079434.9	ENSMUST00000166259.8	1596	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCATTTCTTCCTGGAAA	NA	False	NA	NA	False	AATAAA	-12	NA	87501748	87525543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_87501849_87522599_87522812_87524259
transcript_32020.known	chr15	-	2963	16	FSM	ENSMUSG00000042632.18	ENSMUST00000047816.15	2963	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	63.160817671155	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATTGTACAGTGTGTGC	NA	False	NA	-10	True	AATAAA	-16	NA	79212428	79170427	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79212288
transcript_32028.known	chr15	-	3315	10	FSM	ENSMUSG00000009035.16	ENSMUST00000228002.2	3315	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	128.214615603374	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGATTGTATTGAAATCTC	NA	False	NA	-23	True	AATAAA	-30	NA	79287456	79244903	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_79247086_79247857_79247879_79249484_79249680_79249986_79250157_79250786_79250879_79253869_79253946_79254097_79254189_79261246_79261413_79262663_79262914_79287384
transcript_3203.known	chr1	+	3942	23	FSM	ENSMUSG00000026288.15	ENSMUST00000170300.8	3942	23	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_20	86.0654661453124	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGGCCTCCTGACTGTGT	9370	False	NA	14	True	AATAAA	-15	NA	87603960	87648224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87642816_87642998_87643036_87645411_87646007_87647042
transcript_32030.known	chr15	-	3627	9	FSM	ENSMUSG00000009035.16	ENSMUST00000074991.10	3627	9	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_8	29.0298876160415	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCCTGCCAGCGAGGTT	NA	False	NA	-3	True	AATATA	-34	NA	79287769	79244883	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_79247086_79249484_79249680_79249986_79250157_79250786_79250879_79253869_79253946_79254097_79254189_79261246_79261413_79262663_79262914_79287384
transcript_32032.nic	chr15	-	2714	11	NIC	ENSMUSG00000022433.22	novel	2695	11	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_10	155.61375260561	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATACCCTCTGTCTGCCTCT	8418	False	NA	-4	True	AATAAA	-24	NA	79339778	79302055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_79303388_79304104_79304169_79304783_79304924_79305017_79305211_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323060_79339690
transcript_32035.nic	chr15	-	1421	11	NIC	ENSMUSG00000022433.22	novel	1392	11	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_10	155.61375260561	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TACAAATAAGAGAAAGGACA	8418	False	NA	NA	False	NA	NA	NA	79339778	79303348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_79303388_79304104_79304169_79304783_79304924_79305017_79305211_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323060_79339690
transcript_32040.known	chr15	-	2695	11	FSM	ENSMUSG00000022433.22	ENSMUST00000117786.9	2695	11	0	0	0	0	multi-exon	TRUE	canonical	3	59	junction_10	149.550794046705	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATACCCTCTGTCTGCCTCT	8156	False	NA	-4	True	AATAAA	-24	NA	79326200	79302055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_79303388_79304104_79304169_79304783_79304924_79305017_79305211_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323056_79326127
transcript_32041.known	chr15	-	1392	11	FSM	ENSMUSG00000022433.22	ENSMUST00000120859.9	1392	11	0	0	0	0	multi-exon	FALSE	canonical	3	332	junction_10	81.5738315883225	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAATTAAATAC	8153	False	NA	NA	False	NA	NA	NA	79326203	79303365	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_79303388_79304104_79304169_79304783_79304924_79305017_79305211_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323060_79326127
transcript_32042.known	chr15	-	4732	13	FSM	ENSMUSG00000055065.8	ENSMUST00000054014.9	4732	13	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	13.6714930502203	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTGAATTTTTTATTACA	NA	False	NA	-40	True	AATAAA	-15	NA	79430942	79411936	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_79414719_79415872_79416116_79420157_79420218_79421197_79421260_79421635_79421747_79422759_79422933_79423018_79423180_79423519_79423662_79424613_79424680_79425234_79425369_79426687_79426788_79427906_79428058_79430395
transcript_32043.known	chr15	-	4726	13	FSM	ENSMUSG00000055065.8	ENSMUST00000229877.2	4726	13	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_12	13.0064086767511	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTGAATTTTTTATTACA	NA	False	NA	-40	True	AATAAA	-15	NA	79430942	79411936	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_79414719_79415878_79416116_79420157_79420218_79421197_79421260_79421635_79421747_79422759_79422933_79423018_79423180_79423519_79423662_79424613_79424680_79425234_79425369_79426687_79426788_79427906_79428058_79430395
transcript_32044.known	chr15	-	2821	11	FSM	ENSMUSG00000055065.8	ENSMUST00000229431.2	2821	11	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_10	13.6707717412003	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTGCATATTTTAAAATC	NA	False	NA	NA	False	ATTAAA	-14	NA	79430760	79418861	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_79420218_79421197_79421260_79421635_79421747_79422759_79422933_79423018_79423180_79423519_79423662_79424613_79424680_79425234_79425369_79426687_79426788_79427906_79428058_79430395
transcript_32049.known	chr15	+	1411	5	FSM	ENSMUSG00000010830.9	ENSMUST00000010974.9	1411	5	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_3	14.7986485869487	554	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCAAGTATTTATTTATA	NA	False	NA	11	True	AATAAA	-16	NA	79400611	79411940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_79400842_79407011_79407113_79409004_79409164_79409867_79410121_79411272
transcript_32053.known	chr15	-	2219	14	FSM	ENSMUSG00000022429.12	ENSMUST00000023065.8	2219	14	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_6	20.9451241307391	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTTGATTCTGCATTCA	NA	False	NA	NA	False	AGTAAA	-16	NA	79489309	79445697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_79446784_79452839_79452957_79468519_79468581_79469062_79469178_79469298_79469373_79469869_79469962_79472951_79473025_79475805_79475848_79477335_79477389_79480444_79480528_79484246_79484394_79485717_79485763_79486601_79486686_79489162
transcript_3206.known	chr1	+	4125	22	FSM	ENSMUSG00000026288.15	ENSMUST00000167032.2	4125	22	0	0	0	0	multi-exon	FALSE	canonical	3	377	junction_4	52.3837661581916	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGGCCTCCTGACTGTGT	9370	False	NA	14	True	AATAAA	-15	NA	87603960	87648224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87643036_87645411_87646007_87647042
transcript_32066.known	chr15	-	1931	12	FSM	ENSMUSG00000022429.12	ENSMUST00000229408.2	1931	12	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_5	21.834085113127	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAAATATAAGACTATTTA	NA	False	NA	NA	False	AATAAA	-10	NA	79489300	79445811	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_79446784_79452839_79452957_79468519_79468581_79469062_79469178_79469298_79469373_79475805_79475848_79477335_79477389_79480444_79480528_79484246_79484394_79485717_79485763_79486601_79486686_79489162
transcript_32086.nnic	chr15	-	882	7	NIC	ENSMUSG00000022429.12	novel	1772	9	NA	NA	-58	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	30.9066695427091	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGATGTGAAGCTTATATT	NA	False	NA	-4	True	ATTAAA	-15	NA	79489368	79446583	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_79446784_79452839_79452957_79480444_79480528_79484246_79484394_79485717_79485763_79486601_79486686_79489162
transcript_32091.nic	chr15	-	598	5	ISM	ENSMUSG00000022429.12	ENSMUST00000229408.2	1931	12	-68	34600	-58	-33828	5prime_fragment	FALSE	canonical	3	43	junction_1	18.3507493035026	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGGAGTCCATGTTTCT	NA	False	NA	NA	False	NA	NA	NA	79489368	79480411	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_79480528_79484246_79484394_79485717_79485763_79486601_79486686_79489162
transcript_32093.nic	chr15	-	874	4	ISM	ENSMUSG00000022429.12	ENSMUST00000229408.2	1931	12	-68	38043	-58	-37271	5prime_fragment	FALSE	canonical	3	81	junction_3	2.82842712474619	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTACCTTTATACTACTCT	NA	False	NA	NA	False	ATTAAA	-19	NA	79489368	79483854	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_79484394_79485717_79485763_79486601_79486686_79489162
transcript_32094.nic	chr15	-	475	4	ISM	ENSMUSG00000022429.12	ENSMUST00000229408.2	1931	12	-68	38442	-58	-37670	5prime_fragment	FALSE	canonical	3	81	junction_3	2.82842712474619	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTATTGTAAGCCAAGTTC	NA	False	NA	NA	False	ATTAAA	-15	NA	79489368	79484253	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_79484394_79485717_79485763_79486601_79486686_79489162
transcript_32098.known	chr15	+	1147	5	FSM	ENSMUSG00000022428.9	ENSMUST00000023064.9	1147	5	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_3	15.1224171348366	1375	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCTGTGTAGCAAAAATAG	9559	False	NA	NA	False	ATTAAA	-14	NA	79543399	79551861	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_79543495_79545571_79545726_79549846_79549953_79550031_79550151_79551188
transcript_32103.known	chr15	+	595	3	FSM	ENSMUSG00000022427.5	ENSMUST00000229502.2	595	3	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	445.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTCTTACATGCCCATTG	8198	False	NA	5	True	AATAAA	-13	NA	79555081	79556766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_79555210_79556097_79556216_79556417
transcript_32105.known	chr15	+	1569	4	FSM	ENSMUSG00000022427.5	ENSMUST00000023062.5	1569	4	0	0	0	0	multi-exon	FALSE	canonical	3	903	junction_3	55.9305124437656	1141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTTGTTTTTATTGGTG	8178	False	NA	NA	False	AATAGA	-12	NA	79555061	79557601	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_79555210_79555373_79555493_79556097_79556216_79556417
transcript_32106.known	chr15	+	3449	12	FSM	ENSMUSG00000042535.10	ENSMUST00000046463.10	3449	12	0	0	0	0	multi-exon	TRUE	canonical	3	199	junction_6	19.3826198026279	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGTCATGTTCCCTGCCC	NA	False	NA	17	True	AATAAA	-18	NA	79575045	79605680	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_79575300_79578356_79578469_79591192_79591374_79591895_79592245_79596296_79596421_79597564_79597680_79600047_79600193_79600286_79600470_79601183_79601320_79601795_79601975_79603228_79603430_79604210
transcript_32110.known	chr15	-	1011	5	FSM	ENSMUSG00000022420.17	ENSMUST00000069877.12	1011	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	59.2637114936282	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCTGTGGTGTATTGA	327	False	NA	NA	False	ATTAAA	-17	NA	79658584	79645653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_79646251_79646627_79646727_79647710_79647795_79649016_79649223_79658559
transcript_32112.nic	chr15	-	1580	5	ISM	ENSMUSG00000022420.17	ENSMUST00000162713.9	1357	7	2464	-684	-41	0	3prime_fragment	FALSE	canonical	3	63	junction_3	39.8591269347436	582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCTGTGGTGTATTGA	202	False	NA	NA	False	ATTAAA	-17	NA	79658709	79645653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_79646727_79647710_79647795_79649016_79649223_79649987_79650055_79658559
transcript_32113.nic	chr15	-	1631	5	NIC	ENSMUSG00000022420.17	novel	1357	7	NA	NA	-41	0	intron_retention	FALSE	canonical	2	4	junction_1	55.4363373609765	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCTGTGGTGTATTGA	202	False	NA	NA	False	ATTAAA	-17	NA	79658709	79645653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_79646778_79647710_79647795_79649016_79649223_79649987_79650055_79658559
transcript_32114.known	chr15	-	1472	4	FSM	ENSMUSG00000022420.17	ENSMUST00000023055.8	1472	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	38.6091526281874	544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCTGTGGTGTATTGA	243	False	NA	NA	False	ATTAAA	-17	NA	79658668	79645653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_79646727_79647710_79647795_79649016_79649223_79658559
transcript_32116.known	chr15	-	5806	5	FSM	ENSMUSG00000089715.13	ENSMUST00000109627.8	5806	5	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	17.0367250374008	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGCCCCCTGGATGGGG	NA	False	NA	-4	True	AATAAA	-22	NA	79718889	79708096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_79713180_79717712_79717780_79717902_79717969_79718115_79718160_79718343
transcript_32117.known	chr15	-	546	5	FSM	ENSMUSG00000089715.13	ENSMUST00000127721.8	546	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	65.9445790038878	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATCTCCAATTTGTCCAA	NA	False	NA	NA	False	NA	NA	NA	79718526	79716772	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_79716959_79717712_79717780_79717902_79717969_79718115_79718160_79718343
transcript_32120.nic	chr15	+	1981	9	NIC	ENSMUSG00000009585.19	novel	826	5	NA	NA	-31	0	combination_of_known_junctions	FALSE	canonical	3	95	junction_1	219.175122618878	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTAAGTTGTGCATGATTG	7471	False	NA	6	True	NA	NA	NA	79775828	79792119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_+_79776024_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051_79791165_79791504
transcript_32124.known	chr15	+	2459	9	FSM	ENSMUSG00000009585.19	ENSMUST00000109620.10	2459	9	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_5	144.740284648055	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTGTCTCAAAAAAAAAAAAA	8251	False	NA	NA	False	NA	NA	NA	79776608	79792630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_79776771_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051_79791165_79791504
transcript_3213.known	chr1	+	4937	27	FSM	ENSMUSG00000026288.15	ENSMUST00000169754.8	4937	27	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	193.725271374776	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCTGACTGTGTGGTAT	NA	False	NA	19	True	AATAAA	-20	NA	87548033	87648229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_87548354_87563013_87563078_87593108_87593260_87595610_87595786_87597363_87597505_87604004_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87643036_87645411_87646007_87647042
transcript_32130.known	chr15	+	1977	8	FSM	ENSMUSG00000009585.19	ENSMUST00000175752.8	1977	8	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_4	224.554434107971	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCCCCTCACCCATCAGA	8291	False	NA	NA	False	AATAAA	-15	NA	79776648	79792287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_79776771_79779611_79779760_79781895_79782173_79782311_79782427_79789644_79789802_79790541_79790804_79791051_79791165_79791504
transcript_32131.known	chr15	+	1217	8	FSM	ENSMUSG00000009585.19	ENSMUST00000177006.8	1217	8	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	243.312262623274	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGGCAAGAAGAGATTCAAG	8285	False	NA	NA	False	NA	NA	NA	79776642	79791570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_79776771_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051_79791165_79791504
transcript_32135.known	chr15	-	2899	7	FSM	ENSMUSG00000053411.17	ENSMUST00000109616.9	2899	7	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_1	127.989582909444	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTCTGTGTGTCTGGTTG	NA	False	NA	-7	True	ATTAAA	-24	NA	79816853	79800007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_79802252_79802477_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79816648
transcript_32136.nic	chr15	-	2960	7	NIC	ENSMUSG00000053411.17	novel	2899	7	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	156	junction_1	121.853737461488	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTCTGTGTGTCTGGTTG	NA	False	NA	-7	True	ATTAAA	-24	NA	79855335	79800007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_79802252_79802477_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79855069
transcript_3214.known	chr1	+	3130	18	FSM	ENSMUSG00000026289.16	ENSMUST00000027512.13	3130	18	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_7	58.4556141318301	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCGTCTTGATTGTCTTT	7245	False	NA	23	True	AATAAA	-32	NA	87683734	87720150	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_87684037_87687772_87687867_87693059_87693166_87693830_87693905_87694527_87694780_87699113_87699180_87701866_87701954_87702534_87702592_87703478_87703582_87706643_87706750_87707846_87707918_87709392_87709465_87713597_87713719_87713962_87714069_87717052_87717203_87717293_87717342_87718307_87718410_87718937
transcript_32144.known	chr15	-	714	6	FSM	ENSMUSG00000053411.17	ENSMUST00000146719.9	714	6	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	171.122646075848	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACAGGGGGGGAAGGCCA	NA	False	NA	NA	False	NA	NA	NA	79818100	79802348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79817965
transcript_32145.known	chr15	-	528	6	FSM	ENSMUSG00000053411.17	ENSMUST00000132821.8	528	6	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_5	93.730251253264	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTGGACACCCACGCTCC	NA	False	NA	NA	False	NA	NA	NA	79855319	79802649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79855069
transcript_32147.known	chr15	-	710	6	FSM	ENSMUSG00000053411.17	ENSMUST00000109615.8	710	6	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_5	106.136892737634	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTGGGCAGATGGGGACA	NA	False	NA	NA	False	NA	NA	NA	79816741	79802310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79816648
transcript_3215.known	chr1	+	3004	17	FSM	ENSMUSG00000026289.16	ENSMUST00000113186.8	3004	17	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_8	19.4867743610891	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCCTTGCGTCTTGATT	7308	False	NA	17	True	AATAAA	-26	NA	87683797	87720144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_87684037_87687772_87687867_87693059_87693166_87693830_87693905_87694527_87694780_87699113_87699180_87701866_87701954_87703478_87703582_87706643_87706750_87707846_87707918_87709392_87709465_87713597_87713719_87713962_87714069_87717052_87717203_87717293_87717342_87718307_87718410_87718937
transcript_32163.known	chr15	+	826	5	FSM	ENSMUSG00000009585.19	ENSMUST00000177483.8	826	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_4	294.648095191535	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACCAGATGGGTTCTTAGA	7537	False	NA	NA	False	NA	NA	NA	79775894	79789801	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_79776024_79779611_79779760_79781895_79782173_79782311_79782427_79789644
transcript_32166.known	chr15	-	2944	7	FSM	ENSMUSG00000000489.8	ENSMUST00000000500.8	2944	7	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_6	4.63381292481928	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACGTGAATCTGTGTGTTG	NA	False	NA	NA	False	AAAAAG	-14	NA	79899009	79880074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_79881459_79881756_79881906_79884529_79884675_79885882_79886089_79887525_79887616_79889669_79889767_79898136
transcript_3217.known	chr1	+	1674	5	FSM	ENSMUSG00000026289.16	ENSMUST00000134603.2	1674	5	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_1	13.2759180473518	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAAATCAAATAAAGAGT	7325	False	NA	NA	False	TATAAA	-38	NA	87683814	87695705	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_87684037_87687772_87687867_87693059_87693166_87693830_87693905_87694527
transcript_3218.nic	chr1	+	935	2	ISM	ENSMUSG00000026289.16	ENSMUST00000134603.2	1674	5	-51	7271	-14	-7271	5prime_fragment	FALSE	canonical	3	195	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGCAAGGAGCCATGT	7274	False	NA	NA	False	NA	NA	NA	87683763	87688434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_87684037_87687772
transcript_32189.known	chr15	+	819	4	FSM	ENSMUSG00000022415.13	ENSMUST00000009728.13	819	4	0	0	0	0	multi-exon	FALSE	canonical	3	1267	junction_2	72.7232195840274	4478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGCCTGTGTGGATTA	NA	False	NA	18	True	NA	NA	NA	79975534	79997642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_79975694_79994644_79994883_79995799_79995946_79997366
transcript_3219.known	chr1	+	1594	12	FSM	ENSMUSG00000026289.16	ENSMUST00000137638.8	1594	12	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_8	22.6449417846404	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGGTTGCCTTTGATTGA	7308	False	NA	NA	False	GGGGCT	-44	NA	87683797	87713921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_87684037_87687772_87687867_87693059_87693166_87693830_87693905_87694527_87694780_87699113_87699180_87701866_87701954_87703478_87703582_87706643_87706750_87707846_87707918_87709392_87709465_87713597
transcript_32194.known	chr15	-	1351	10	FSM	ENSMUSG00000060036.15	ENSMUST00000081650.15	1351	10	0	0	0	0	multi-exon	FALSE	canonical	3	16287	junction_9	4874.04926341766	350193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTCCCACATTTCTTT	3518	False	NA	-1	True	AATAAA	-17	NA	79967607	79961991	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590_79966784_79967524
transcript_32195.known	chr15	-	1877	9	FSM	ENSMUSG00000060036.15	ENSMUST00000187578.2	1877	9	0	0	0	0	multi-exon	FALSE	canonical	3	16287	junction_8	5123.08483118326	9020	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGGTTTTCCCACATTT	3571	False	NA	-5	True	AATAAA	-13	NA	79967554	79961995	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965985_79966590_79966784_79967524
transcript_32196.known	chr15	-	1781	8	FSM	ENSMUSG00000060036.15	ENSMUST00000188025.7	1781	8	0	0	0	0	multi-exon	FALSE	canonical	3	23824	junction_4	2825.56158044697	6529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGGTTTTCCCACATTTC	4341	False	NA	-4	True	AATAAA	-14	NA	79966784	79961994	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964754_79965096_79965233_79965815_79965985_79966590
transcript_32197.known	chr15	-	824	5	FSM	ENSMUSG00000060036.15	ENSMUST00000187832.7	824	5	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_2	12495.7520081826	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATGAGATGATTGATGTC	3591	False	NA	NA	False	NA	NA	NA	79967534	79964617	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_79964754_79965096_79965413_79965815_79965985_79966590_79966784_79967524
transcript_32198.known	chr15	+	4180	4	FSM	ENSMUSG00000022415.13	ENSMUST00000009727.12	4180	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	626.014554321401	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGCTGTGTCACTGTGTT	NA	False	NA	20	True	AATAAA	-20	NA	79975544	80003702	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_79975694_79994644_79994883_79995799_79995946_80000055
transcript_32199.known	chr15	+	2964	11	FSM	ENSMUSG00000022414.9	ENSMUST00000023050.9	2964	11	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	7.29109045342327	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTCATCTTGTCTATCTG	4993	False	NA	15	True	AGTAAA	-1	NA	80017327	80045908	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_80017390_80032427_80032565_80032887_80033042_80033982_80034070_80034627_80034767_80036865_80036980_80037832_80037945_80039957_80040103_80041804_80042028_80042951_80043109_80044274
transcript_32204.known	chr15	+	5148	6	FSM	ENSMUSG00000022412.15	ENSMUST00000023048.12	5148	6	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_1	35.3361005205724	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACGTGTCTATGTGGT	2753	False	NA	16	True	AATAAA	-18	NA	80118218	80137572	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_80118383_80120005_80120355_80130937_80131089_80132074_80132253_80132441_80132705_80133529
transcript_32206.known	chr15	+	4394	6	FSM	ENSMUSG00000022412.15	ENSMUST00000228788.3	4394	6	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_4	71.0785480999718	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTGCAGGGCTGGCTCTG	2836	False	NA	NA	False	NA	NA	NA	80118301	80136987	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_80118383_80120005_80120355_80130937_80131089_80132074_80132253_80132527_80132705_80133529
transcript_3221.nic	chr1	+	720	4	ISM	ENSMUSG00000070738.11	ENSMUST00000027517.14	5695	30	0	29033	0	-287	5prime_fragment	FALSE	canonical	3	363	junction_2	19.7033556081755	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATCTTTTCCCTCTTTG	4070	False	NA	NA	False	ATTAAA	-17	NA	87781008	87843179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_87781179_87808089_87808201_87809580_87809662_87842821
transcript_32217.known	chr15	+	659	4	FSM	ENSMUSG00000042406.9	ENSMUST00000229828.2	659	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	614.772044473939	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATGTGATCTTTTTGCC	4146	False	NA	NA	False	NA	NA	NA	80139385	80140960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_80139486_80139768_80139887_80140407_80140723_80140834
transcript_32223.known	chr15	+	2019	1	FSM	ENSMUSG00000042406.9	ENSMUST00000230434.2	2019	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	516	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	4484	False	NA	32	True	AATAAA	-20	NA	80139723	80141742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_80139700_80141700
transcript_32224.known	chr15	+	1725	3	FSM	ENSMUSG00000042406.9	ENSMUST00000109605.5	1725	3	0	0	0	0	multi-exon	FALSE	canonical	3	1292	junction_2	43	9455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	4145	False	NA	32	True	AATAAA	-20	NA	80139384	80141742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_80139887_80140407_80140723_80140834
transcript_3223.known	chr1	-	1661	2	FSM	ENSMUSG00000005501.15	ENSMUST00000189586.2	1661	2	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	AGTAAA	-14	NA	87936272	87933616	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_87935165_87936159
transcript_32230.known	chr15	-	838	4	FSM	ENSMUSG00000051518.9	ENSMUST00000052499.9	838	4	0	0	0	0	multi-exon	FALSE	canonical	3	697	junction_3	66.5181679443043	8977	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCAAGTGTGTGTGTGTG	NA	False	NA	-5	True	AATAAA	-25	NA	80148516	80144815	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_80145332_80145497_80145596_80148183_80148319_80148427
transcript_32231.known	chr15	-	465	3	FSM	ENSMUSG00000051518.9	ENSMUST00000229962.2	465	3	0	0	0	0	multi-exon	FALSE	canonical	3	818	junction_1	17	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAGAAGAAGAAGGCTG	NA	False	NA	NA	False	NA	NA	NA	80148485	80145266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_80145332_80145497_80145596_80148183
transcript_32238.known	chr15	+	1294	8	FSM	ENSMUSG00000042351.10	ENSMUST00000229980.2	1294	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.349927106111883	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTATAATAGTAATTTATT	NA	False	NA	NA	False	AAAACA	-32	NA	80456794	80532966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_80456943_80507923_80508016_80518536_80518629_80522645_80522766_80527845_80528012_80530337_80530554_80532058_80532176_80532623
transcript_3224.known	chr1	-	2335	1	FSM	ENSMUSG00000005501.15	ENSMUST00000187871.2	2335	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	AGTAAA	-14	NA	87935951	87933616	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_87933600_87936000
transcript_32240.known	chr15	+	2993	5	FSM	ENSMUSG00000022408.8	ENSMUST00000023044.7	2993	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.82915619758885	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCAGTGTGGTGTGTGC	NA	False	NA	NA	False	ATTAAA	-30	NA	80556047	80584626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_80556589_80574117_80574286_80574733_80574856_80576111_80576798_80583150
transcript_32244.nic	chr15	+	557	5	ISM	ENSMUSG00000047888.11	ENSMUST00000067689.9	17332	25	-81	82332	-81	-22735	5prime_fragment	FALSE	canonical	1	2	junction_2	3.57071421427143	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCCACCCAGAAGGTGAG	NA	False	NA	NA	False	GATAAA	-10	NA	80595432	80742954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_+_80595690_80631606_80631675_80643740_80643832_80668939_80669008_80742881
transcript_32245.known	chr15	+	3240	5	FSM	ENSMUSG00000047888.11	ENSMUST00000226857.2	3240	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	1.29903810567666	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAAAAAAAAGTCACCA	NA	False	NA	NA	False	TTTAAA	-12	NA	80682842	80765689	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_80683006_80742881_80742970_80748585_80748608_80760517_80760863_80763067
transcript_32248.nnic	chr15	+	485	4	NIC	ENSMUSG00000047888.11	novel	17332	25	NA	NA	-77	-22735	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	4.02768199119819	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCCACCCAGAAGGTGAG	NA	False	NA	NA	False	GATAAA	-10	NA	80595436	80742954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_+_80595690_80643740_80643832_80668939_80669008_80742881
transcript_3225.known	chr1	+	5695	30	FSM	ENSMUSG00000070738.11	ENSMUST00000027517.14	5695	30	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_21	37.602590545009	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCATTCCTGTCCTCAT	4070	False	NA	20	True	AATAAA	-24	NA	87781008	87872212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_87781179_87808089_87808201_87809580_87809662_87842821_87842927_87843213_87843347_87844090_87844198_87844528_87844655_87845613_87845717_87846280_87846444_87849294_87849404_87851793_87851934_87852201_87852287_87853415_87853511_87853594_87853695_87853772_87854047_87854587_87854747_87855406_87855533_87857462_87857560_87859653_87859765_87861827_87861925_87862115_87862224_87863059_87863174_87864005_87864141_87864470_87864623_87865875_87865988_87866067_87866161_87866917_87867038_87867898_87868029_87869090_87869222_87870104
transcript_32254.nic	chr15	+	305	2	ISM	ENSMUSG00000047888.11	ENSMUST00000226857.2	3240	5	-69	22735	-69	-22735	5prime_fragment	FALSE	canonical	3	10	junction_1	0	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCCACCCAGAAGGTGAG	NA	False	NA	NA	False	GATAAA	-10	NA	80682773	80742954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_+_80683006_80742881
transcript_32255.known	chr15	+	17332	25	FSM	ENSMUSG00000047888.11	ENSMUST00000067689.9	17332	25	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	6.56960594116742	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTACTGTTGTCATTTCTG	NA	False	NA	7	True	AATAAA	-19	NA	80595513	80825286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_80595690_80631606_80631675_80643740_80643832_80668939_80669008_80742881_80742970_80748585_80748608_80760517_80760863_80763067_80765408_80767144_80767304_80768407_80768584_80771159_80771235_80772030_80772077_80773219_80773357_80778529_80778656_80786084_80786217_80786488_80786588_80786720_80786914_80797505_80797644_80800884_80801062_80802151_80802299_80802711_80802808_80807658_80807884_80808286_80808358_80811800_80811941_80813289
transcript_3226.known	chr1	-	1051	1	FSM	ENSMUSG00000081984.4	ENSMUST00000119972.4	1051	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCACTGTTATGTTCTAG	NA	False	NA	NA	False	ATTAAA	-15	NA	88133504	88132453	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_88132500_88133500
transcript_32262.known	chr15	+	3711	13	FSM	ENSMUSG00000022407.11	ENSMUST00000023043.10	3711	13	0	0	0	0	multi-exon	FALSE	canonical	3	932	junction_8	68.052471585453	1332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGCCAGAGGTGCAGAGC	NA	False	NA	NA	False	AGTAAA	-13	NA	80832690	80855147	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_80832902_80836397_80836602_80839820_80839866_80840413_80840494_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80847931_80848080_80848229_80850292_80850384_80851312_80851403_80851789_80851967_80852862
transcript_3227.known	chr1	+	2297	6	FSM	ENSMUSG00000054545.18	ENSMUST00000113134.8	2297	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.4	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACTACTCTTCTTTTCAT	7014	False	NA	NA	False	AATAAA	-15	NA	88062530	88146719	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_88062658_88066194_88067054_88142765_88142898_88143516_88143605_88143859_88144080_88145848
transcript_32287.known	chr15	+	1932	11	FSM	ENSMUSG00000022407.11	ENSMUST00000166711.8	1932	11	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	319.033289799043	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACAAACAAAAAGAATG	NA	False	NA	NA	False	NA	NA	NA	80832712	80853320	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_80832902_80836397_80836602_80839820_80839866_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80848229_80850292_80850384_80851312_80851403_80851789_80851967_80852862
transcript_32288.known	chr15	-	849	4	FSM	ENSMUSG00000042292.19	ENSMUST00000123243.8	849	4	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	7.40870359029762	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGGTCACCAGAGCTCCC	NA	False	NA	NA	False	AATATA	-41	NA	81074929	80910619	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_80910919_80929489_80929556_81001591_81001854_81074707
transcript_32290.known	chr15	+	610	4	FSM	ENSMUSG00000042303.20	ENSMUST00000156064.8	610	4	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_3	12.7627931460511	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTTGGCTTTTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	80862020	80888386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_80862067_80886769_80886866_80887560_80887647_80888004
transcript_32291.known	chr15	+	401	5	FSM	ENSMUSG00000042303.20	ENSMUST00000137004.2	401	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	66.5972033947372	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTTGGCTTTTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	80862037	80888386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_80862067_80886769_80886866_80887560_80887647_80888004_80888072_80888263
transcript_32292.known	chr15	+	2997	22	FSM	ENSMUSG00000042303.20	ENSMUST00000139517.9	2997	22	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_4	14.7956603308487	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTTTGTTTTATTTTAA	NA	False	NA	7	True	AATACA	-17	NA	80861965	80896491	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_80862067_80886769_80886866_80887560_80887647_80888004_80888072_80890607_80890814_80890906_80891015_80891647_80891792_80892051_80892248_80892489_80892636_80892884_80893110_80893424_80893480_80893607_80893736_80893834_80893991_80894141_80894197_80894429_80894480_80894610_80894764_80894917_80894989_80895061_80895111_80895186_80895273_80895438_80895562_80895662_80895724_80895856
transcript_32293.known	chr15	-	544	2	FSM	ENSMUSG00000115976.2	ENSMUST00000230118.2	544	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGTACCGTTGTGAACT	6284	False	NA	NA	False	AATAAA	-17	NA	80890611	80889607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_80889892_80890351
transcript_32294.known	chr15	-	814	2	FSM	ENSMUSG00000115970.2	ENSMUST00000229383.2	814	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTAGTGCTGCTCCTTA	NA	False	NA	NA	False	AATAAA	-12	NA	81132169	81126860	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_81127621_81132115
transcript_32295.known	chr15	-	971	2	FSM	ENSMUSG00000115970.2	ENSMUST00000229855.2	971	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACTTAGTGCTGCTCCT	NA	False	NA	NA	False	AATAAA	-10	NA	81132089	81126862	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_81127621_81131876
transcript_32297.known	chr15	-	1724	9	FSM	ENSMUSG00000022404.9	ENSMUST00000023040.9	1724	9	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_6	19.7638400873919	1401	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAAAGTTGCTCTTGATT	6848	False	NA	-10	True	AATAAA	-27	NA	81245013	81203111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_81203978_81207810_81207894_81211241_81211338_81211417_81211564_81213250_81213368_81222136_81222289_81224174_81224242_81228301_81228363_81244877
transcript_3230.known	chr1	-	4878	8	FSM	ENSMUSG00000044783.17	ENSMUST00000054674.15	4878	8	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_7	57.9852197916479	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGAGGGTGCAGGTTTGGC	8591	False	NA	NA	False	AATAAA	-24	NA	88205355	88190192	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_88194381_88195669_88195749_88197042_88197136_88197923_88198022_88200450_88200488_88202763_88202820_88204940_88205008_88205095
transcript_32310.known	chr15	-	3346	12	FSM	ENSMUSG00000022403.16	ENSMUST00000172107.8	3346	12	0	0	0	0	multi-exon	FALSE	canonical	3	2366	junction_3	110.211442162196	4787	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGACCTTCCCCCATTT	NA	False	NA	-19	True	AATAAA	-18	NA	81284244	81247869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
transcript_32315.known	chr15	+	666	4	FSM	ENSMUSG00000022401.13	ENSMUST00000164144.3	666	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	25.4558441227157	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATGCTTTTTGTGCCTCG	NA	False	NA	NA	False	NA	NA	NA	81284350	81311739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_81284489_81298632_81298750_81300047_81300196_81311476
transcript_32317.known	chr15	+	1501	3	FSM	ENSMUSG00000022401.13	ENSMUST00000166831.9	1501	3	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	27	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCAGCAGTGGGCGTGGC	NA	False	NA	NA	False	NA	NA	NA	81284370	81301313	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_81284489_81298632_81298750_81300047
transcript_32319.known	chr15	+	6058	10	FSM	ENSMUSG00000022401.13	ENSMUST00000163754.9	6058	10	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_9	9.02397355744309	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCGTGTCTGTCTTATTTT	NA	False	NA	24	True	TATAAA	-17	NA	81284338	81341683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_81284489_81298632_81298750_81311476_81311885_81314890_81315094_81320914_81320978_81322267_81322382_81326579_81326666_81332519_81332698_81335101_81335223_81337065
transcript_32331.known	chr15	+	651	5	FSM	ENSMUSG00000022400.10	ENSMUST00000230062.2	651	5	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_1	1851.90407081468	2390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACGAGGAACCTGTCAGA	NA	False	NA	NA	False	NA	NA	NA	81350841	81359587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_81350956_81352355_81352435_81355152_81355224_81358043_81358130_81359286
transcript_32340.known	chr15	+	1675	5	FSM	ENSMUSG00000022400.10	ENSMUST00000023036.7	1675	5	0	0	0	0	multi-exon	FALSE	canonical	3	4160	junction_1	231.400491572512	23915	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTGTGTCATTTTCACC	NA	False	NA	17	True	NA	NA	NA	81350496	81360570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_81350652_81352355_81352435_81355152_81355224_81358043_81358130_81359286
transcript_32341.known	chr15	-	855	1	FSM	ENSMUSG00000103520.2	ENSMUST00000192082.2	855	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTTACCTTGTGTGTCTC	NA	False	NA	NA	False	AATAAA	-27	NA	81469229	81468374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_81468400_81469200
transcript_32343.known	chr15	-	2548	6	FSM	ENSMUSG00000063765.13	ENSMUST00000072910.6	2548	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	13.905394636615	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTAGCATTAGTGCTAGC	4995	False	NA	NA	False	NA	NA	NA	81581488	81570365	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_81570604_81576308_81576508_81577187_81577355_81577734_81579445_81580050_81580226_81581429
transcript_32344.known	chr15	-	1095	3	FSM	ENSMUSG00000063765.13	ENSMUST00000173898.2	1095	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	12.5	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACAAAACCAAAATACC	8075	False	NA	NA	False	NA	NA	NA	81578408	81570381	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_81570604_81576308_81576508_81577734
transcript_32346.known	chr15	+	3487	17	FSM	ENSMUSG00000022394.15	ENSMUST00000023029.15	3487	17	0	0	0	0	multi-exon	FALSE	canonical	3	631	junction_15	40.713125570877	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGATGATATCAGATGAGT	NA	False	NA	17	True	AATAAA	-24	NA	81548089	81572516	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_81548226_81551359_81551598_81552830_81552965_81554327_81554452_81555268_81555349_81559715_81559834_81560458_81560594_81561025_81561115_81566120_81566353_81566771_81566849_81567153_81567259_81568043_81568192_81568501_81568585_81568914_81569150_81569581_81569648_81570411_81570523_81571140
transcript_32347.nnic	chr15	+	2610	19	NNC	ENSMUSG00000022390.12	novel	5740	23	NA	NA	-65	86998	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_18	70.7829232387461	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAGCCGGGCATGGTGGTG	1883	False	NA	NA	False	NA	NA	NA	81629192	81767459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_81629548_81652195_81652255_81653033_81653068_81653184_81653383_81655938_81656098_81656628_81656710_81657486_81657544_81660006_81660050_81660478_81660673_81660981_81661304_81662073_81662133_81662810_81662911_81663309_81663472_81664604_81664811_81666159_81666261_81667225_81667408_81670082_81670169_81670820_81670841_81767267
transcript_32350.known	chr15	-	2984	17	FSM	ENSMUSG00000022391.17	ENSMUST00000170134.9	2984	17	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_16	270.05335121046	555	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGAAGCTTCTTTCATCAA	NA	False	NA	-4	True	AATAAA	-25	NA	81614102	81588448	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613417_81613466_81613912
transcript_32353.known	chr15	-	3033	16	FSM	ENSMUSG00000022391.17	ENSMUST00000052374.13	3033	16	0	0	0	0	multi-exon	FALSE	canonical	3	698	junction_15	51.7762708412089	664	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCCCGGAAGCTTCTTTC	NA	False	NA	-9	True	AATAAA	-20	NA	81614204	81588453	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613912
transcript_3236.nic	chr1	-	726	3	ISM	ENSMUSG00000044783.17	ENSMUST00000147393.2	2030	5	-140	9734	-13	0	5prime_fragment	FALSE	canonical	3	259	junction_2	28.5	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATGCCTCTTTTCTTCCTC	8578	False	NA	NA	False	AAGAAA	-10	NA	88205368	88202433	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_88202820_88204940_88205008_88205095
transcript_32361.nic	chr15	+	944	4	ISM	ENSMUSG00000022390.12	ENSMUST00000229044.2	4618	15	-65	14965	-65	-2973	5prime_fragment	FALSE	canonical	3	266	junction_2	6.68331255192114	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACTGGTTTGAGTTTTTT	1883	False	NA	NA	False	NA	NA	NA	81629192	81653680	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_+_81629548_81652195_81652255_81653033_81653068_81653184
transcript_32364.nic	chr15	-	613	2	ISM	ENSMUSG00000022391.17	ENSMUST00000052374.13	3033	16	69	19990	-33	-5453	5prime_fragment	FALSE	canonical	3	698	junction_1	0	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAAACAGTGTCCTGGTC	NA	False	NA	NA	False	NA	NA	NA	81614135	81608443	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_81608834_81613912
transcript_32365.known	chr15	-	1685	6	FSM	ENSMUSG00000022391.17	ENSMUST00000230287.2	1685	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_5	390.942655641464	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTGGCTATGTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	81614081	81601990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613417_81613466_81613912
transcript_32366.known	chr15	+	5740	23	FSM	ENSMUSG00000022390.12	ENSMUST00000109554.3	5740	23	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_21	52.4698457282257	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTTTAGCCTTTGTTCT	1948	False	NA	4	True	AATAAA	-15	NA	81629257	81680461	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_81629548_81652195_81652255_81653033_81653068_81653184_81653383_81655938_81656098_81656628_81656710_81657486_81657544_81660006_81660050_81660478_81660673_81660981_81661304_81662073_81662133_81662810_81662911_81663309_81663472_81664604_81664811_81666159_81666261_81667225_81667408_81670082_81670169_81676132_81676267_81676430_81676537_81676663_81676773_81676980_81677115_81677220_81677385_81677701
transcript_32367.known	chr15	-	1115	2	FSM	ENSMUSG00000097613.2	ENSMUST00000181220.2	1115	2	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTCATGTATTTATTTTG	7404	False	NA	NA	False	NA	NA	NA	81686814	81684991	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_81685903_81686610
transcript_32368.known	chr15	+	492	2	FSM	ENSMUSG00000022389.16	ENSMUST00000170027.2	492	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTGCAATCTCTGACTC	NA	False	NA	NA	False	NA	NA	NA	81686930	81689555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_81687088_81689220
transcript_3237.nic	chr1	-	561	3	ISM	ENSMUSG00000044783.17	ENSMUST00000147393.2	2030	5	-140	9899	-13	-165	5prime_fragment	FALSE	canonical	3	259	junction_2	28.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCTGGCTCTTGTCTGCT	8578	False	NA	NA	False	GATAAA	-20	NA	88205368	88202598	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_88202820_88204940_88205008_88205095
transcript_32370.nnic	chr15	+	1117	3	Fusion	ENSMUSG00000061848.6_ENSMUSG00000022477.14	novel	653	3	NA	NA	-29015	59	multi-exon	FALSE	non_canonical	0	0	junction_1	0	54	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAATAAATAAAATGAT	1110	False	NA	NA	False	AATAAA	-29	NA	81727494	81857105	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr15_+_81727956_81791626_81791733_81856555
transcript_32374.known	chr15	-	4151	2	FSM	ENSMUSG00000048546.9	ENSMUST00000050467.9	4151	2	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTCTGCCTACTTGTTTG	NA	False	NA	-8	True	ATTAAA	-17	NA	81742686	81732472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_81736074_81742136
transcript_32375.known	chr15	-	2590	1	FSM	ENSMUSG00000048546.9	ENSMUST00000229500.2	2590	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	81742524	81739934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_81739900_81742500
transcript_3238.known	chr1	-	2780	2	FSM	ENSMUSG00000044783.17	ENSMUST00000126739.2	2780	2	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATGCCTCTTTTCTTCCTC	8645	False	NA	NA	False	AAGAAA	-10	NA	88205301	88202433	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_88205008_88205095
transcript_32380.known	chr15	-	471	4	FSM	ENSMUSG00000061360.9	ENSMUST00000160415.2	471	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	625.5474047229	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTGGCCCCTGCCACTA	NA	False	NA	NA	False	NA	NA	NA	81755866	81749886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_81750094_81754532_81754700_81755366_81755391_81755793
transcript_32381.known	chr15	-	1663	4	FSM	ENSMUSG00000061360.9	ENSMUST00000023117.10	1663	4	0	0	0	0	multi-exon	FALSE	canonical	3	1228	junction_3	69.0426599204354	2582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCCAAGAAAAAATTCATGG	NA	False	NA	NA	False	AATAAA	-22	NA	81756112	81748720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_81750094_81754532_81754700_81755366_81755391_81756013
transcript_32386.known	chr15	-	1290	6	FSM	ENSMUSG00000022476.9	ENSMUST00000230765.2	1290	6	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_5	105.973581613532	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACTTGGGAAAGTAGAGAG	697	False	NA	NA	False	NA	NA	NA	81810172	81800770	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_81800867_81801400_81801603_81802468_81802533_81802875_81802963_81806609_81806707_81809428
transcript_32387.known	chr15	+	2918	18	FSM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	0	0	0	0	multi-exon	FALSE	canonical	3	1727	junction_10	137.479737418618	2420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGCCTGAGTGATTGA	NA	False	NA	19	True	AAAAAG	-16	NA	81756509	81799334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
transcript_32388.known	chr15	+	351	3	FSM	ENSMUSG00000022477.14	ENSMUST00000157003.8	351	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	883.5	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTAGCCTATGCTCTCTG	NA	False	NA	NA	False	NA	NA	NA	81756684	81773890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_81756750_81773498_81773581_81773686
transcript_32389.known	chr15	+	456	2	FSM	ENSMUSG00000022477.14	ENSMUST00000135198.2	456	2	0	0	0	0	multi-exon	FALSE	canonical	3	1775	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTAGCCTATGCTCTCT	NA	False	NA	NA	False	NA	NA	NA	81756684	81773889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_81756750_81773498
transcript_32390.known	chr15	-	2542	6	FSM	ENSMUSG00000022476.9	ENSMUST00000023113.7	2542	6	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_5	12.0432553738597	494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGCTGTCATCAAAAATAAA	428	False	NA	NA	False	AATAAA	-17	NA	81810441	81799229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_81800867_81801400_81801603_81802468_81802533_81802875_81802963_81806609_81806707_81809986
transcript_32391.known	chr15	+	2490	4	FSM	ENSMUSG00000042109.9	ENSMUST00000038757.8	2490	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTCTTGAGTGTTC	5842	False	NA	NA	False	AATAAA	-28	NA	81820959	81835142	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_81821189_81830831_81831134_81832774_81832898_81833306
transcript_32394.known	chr15	-	1300	8	FSM	ENSMUSG00000022474.16	ENSMUST00000023112.12	1300	8	0	0	0	0	multi-exon	FALSE	canonical	3	940	junction_3	83.919543587405	4550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	-3	True	ATTAAA	-14	NA	81845131	81835308	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_81835814_81836124_81836241_81836925_81837002_81839849_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
transcript_32395.known	chr15	-	1291	9	FSM	ENSMUSG00000022474.16	ENSMUST00000229385.2	1291	9	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	470.161341988046	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	-3	True	ATTAAA	-14	NA	81845043	81835308	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_81835814_81836124_81836241_81836925_81837002_81838572_81838652_81839849_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
transcript_32396.known	chr15	-	1059	7	FSM	ENSMUSG00000022474.16	ENSMUST00000071462.7	1059	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	406.121355699938	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	-3	True	ATTAAA	-14	NA	81845070	81835308	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_81835814_81836124_81836241_81836925_81837002_81839849_81839950_81840369_81840462_81842096_81842112_81844915
transcript_32397.known	chr15	-	612	5	FSM	ENSMUSG00000022474.16	ENSMUST00000230229.2	612	5	0	0	0	0	multi-exon	FALSE	canonical	3	1051	junction_1	37.9300342736465	378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTACTGTGTGTCATTTC	NA	False	NA	-4	True	NA	NA	NA	81845034	81839743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
transcript_32406.known	chr15	+	456	1	FSM	ENSMUSG00000061848.6	ENSMUST00000072779.6	456	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2550	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGACTTCTCATTATTTT	6274	False	NA	NA	False	AAGAAA	-29	NA	81856590	81857046	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_81856600_81857000
transcript_32407.known	chr15	+	1024	1	FSM	ENSMUSG00000061633.4	ENSMUST00000074608.4	1024	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1191	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTGAGTGCATTCTTAAA	6326	False	NA	9	True	AATAAA	-17	NA	81864740	81865764	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_81864700_81865800
transcript_32413.known	chr15	-	2934	6	FSM	ENSMUSG00000022472.17	ENSMUST00000152227.8	2934	6	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_5	9.30806102257608	243	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGGTAAGTTGCTTGA	NA	False	NA	-9	True	AATAAA	-16	NA	81900364	81876723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_81879047_81882310_81882434_81883705_81883816_81886741_81886812_81887958_81887981_81900078
transcript_32417.known	chr15	+	2114	13	FSM	ENSMUSG00000022471.15	ENSMUST00000069530.13	2114	13	0	0	0	0	multi-exon	TRUE	canonical	3	579	junction_9	64.3868516598433	1661	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGCACTTTTCAGTAT	NA	False	NA	29	True	AATAAA	-15	NA	81900569	81924286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_81900677_81901310_81901400_81903181_81903295_81906645_81906785_81907007_81907263_81909705_81909890_81911425_81911613_81913322_81913492_81913763_81913926_81915333_81915464_81919877_81919979_81921657_81921772_81923922
transcript_32422.known	chr15	-	2077	3	FSM	ENSMUSG00000063480.9	ENSMUST00000080622.9	2077	3	0	0	0	0	multi-exon	FALSE	canonical	3	3045	junction_2	110	8561	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGGTTTTGCCTGTTT	4906	False	NA	NA	False	NA	NA	NA	81931799	81924725	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_81926570_81928097_81928219_81931687
transcript_32424.known	chr15	+	745	7	FSM	ENSMUSG00000068114.8	ENSMUST00000229597.2	745	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	17.2666988416689	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGGATTTCAAGATCCCAG	NA	False	NA	NA	False	NA	NA	NA	82012207	82025160	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_82012251_82014252_82014372_82015624_82015747_82015917_82016031_82018781_82018964_82019270_82019343_82025066
transcript_32425.known	chr15	+	2046	7	FSM	ENSMUSG00000068114.8	ENSMUST00000089174.6	2046	7	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	6.64371047599825	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGTCTTTGGCTTCTTTT	NA	False	NA	25	True	AATAAA	-36	NA	82012122	82026404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_82012251_82014252_82014372_82015624_82015747_82015945_82016031_82018781_82018964_82019270_82019343_82025066
transcript_32426.known	chr15	+	1854	6	FSM	ENSMUSG00000068114.8	ENSMUST00000229411.2	1854	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	18.8933850857913	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACTATGTCTTTGGCTTC	NA	False	NA	21	True	AATAAA	-32	NA	82012225	82026400	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_82012251_82014252_82014372_82015624_82015747_82018781_82018964_82019270_82019343_82025066
transcript_32427.known	chr15	+	5077	19	FSM	ENSMUSG00000022463.9	ENSMUST00000023100.8	5077	19	0	0	0	0	multi-exon	FALSE	canonical	3	437	junction_18	78.7541886011292	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAAGGCTGTGTGAGTCTG	2173	False	NA	25	True	AATAAA	-21	NA	82031381	82089580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_82031692_82053938_82054356_82055302_82055485_82056953_82057101_82059297_82059520_82061356_82061472_82061606_82061789_82062917_82063111_82063566_82063749_82066181_82066459_82069464_82069635_82076406_82076576_82078245_82078364_82079115_82079226_82080360_82080494_82081818_82081988_82083835_82084022_82087385_82087498_82087897
transcript_32432.known	chr15	+	1981	4	FSM	ENSMUSG00000022463.9	ENSMUST00000230105.2	1981	4	0	0	0	0	multi-exon	FALSE	canonical	3	662	junction_2	39.6176167324027	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGTTG	2243	False	NA	NA	False	NA	NA	NA	82031451	82058095	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_82031692_82053938_82054356_82055302_82055485_82056953
transcript_32433.nnic	chr15	+	603	3	NNC	ENSMUSG00000022463.9	novel	2664	3	NA	NA	10	3	intron_retention	FALSE	canonical	0	0	junction_2	375.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCCTGTTCCTTCCCACT	2183	False	NA	20	True	AATAAA	-16	NA	82031391	82088879	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_82031692_82053938_82054169_82088806
transcript_32435.nic	chr15	+	1420	3	ISM	ENSMUSG00000022463.9	ENSMUST00000230105.2	1981	4	-60	2090	10	537	5prime_fragment	FALSE	canonical	3	662	junction_2	44.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCGTTTTAGGGGGCTGGG	2183	False	NA	NA	False	NA	NA	NA	82031391	82056005	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_+_82031692_82053938_82054356_82055302
transcript_32436.nic	chr15	+	936	2	ISM	ENSMUSG00000022463.9	ENSMUST00000231065.2	2664	3	0	3197	0	267	5prime_fragment	FALSE	canonical	3	751	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGCCATCAGATCTGAGC	2238	False	NA	NA	False	AATAAA	-18	NA	82031446	82054629	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_+_82031692_82053938
transcript_32437.known	chr15	+	2110	1	FSM	ENSMUSG00000116226.2	ENSMUST00000229390.2	2110	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATTGAAAAAGAAAAAA	5811	False	NA	NA	False	NA	NA	NA	82069716	82071826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_82069700_82071800
transcript_32439.known	chr15	-	471	3	FSM	ENSMUSG00000068105.12	ENSMUST00000229984.2	471	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGGACTTCACCCAACAG	NA	False	NA	NA	False	NA	NA	NA	82108503	82107260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_82107445_82107919_82108124_82108420
transcript_32440.known	chr15	-	1924	3	FSM	ENSMUSG00000068105.12	ENSMUST00000089161.10	1924	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	3	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGTGCCTGGGTGCTGTG	NA	False	NA	NA	False	AATAAA	-25	NA	82108554	82105943	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_82107478_82107919_82108124_82108368
transcript_32451.nic	chr15	-	930	6	NIC	ENSMUSG00000068101.12	novel	1202	6	NA	NA	-45	3	combination_of_known_junctions	FALSE	canonical	3	45	junction_5	488.753271088798	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTTGTAGATGCAGAAAC	NA	False	NA	-14	True	AAAAAG	-17	NA	82128656	82118276	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_82118711_82123493_82123586_82124079_82124160_82125527_82125621_82128333_82128414_82128505
transcript_32452.known	chr15	-	1202	6	FSM	ENSMUSG00000068101.12	ENSMUST00000089157.11	1202	6	0	0	0	0	multi-exon	FALSE	canonical	3	1067	junction_2	108.849253557386	3530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	82128949	82117979	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_82118711_82123493_82123586_82124079_82124160_82125527_82125621_82128333_82128414_82128823
transcript_3246.nnic	chr1	+	2085	5	NNC	ENSMUSG00000100908.2	novel	316	2	NA	NA	-75	9689	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	9.24662100445346	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCGAGTGACAATGTCTC	NA	False	NA	9	True	ATTAAA	-23	NA	88387329	88402969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_88388039_88390701_88390815_88393237_88393528_88398642_88398830_88402183
transcript_32466.known	chr15	-	789	5	FSM	ENSMUSG00000068101.12	ENSMUST00000089155.6	789	5	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	529.66121247454	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGTTGTAGATGCAGA	NA	False	NA	-17	True	AAAAAG	-14	NA	82128928	82118279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_82118711_82124079_82124160_82125527_82125621_82128333_82128414_82128823
transcript_32471.known	chr15	-	593	5	FSM	ENSMUSG00000068101.12	ENSMUST00000230408.2	593	5	0	0	0	0	multi-exon	FALSE	canonical	3	1067	junction_2	109.17045158833	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGCGCTGGCCATGTGC	NA	False	NA	NA	False	NA	NA	NA	82128611	82118660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_82118711_82123493_82123586_82124079_82124160_82125527_82125621_82128333
transcript_32472.known	chr15	+	1552	2	FSM	ENSMUSG00000068099.6	ENSMUST00000143238.2	1552	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTACGGTTGTCTCTGTT	NA	False	NA	17	True	AATAAA	-29	NA	82140223	82144954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_82140587_82143765
transcript_32473.known	chr15	+	1413	6	FSM	ENSMUSG00000022455.5	ENSMUST00000023089.5	1413	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	3.32264954516723	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGCCTCCTGCCTTATT	2000	False	NA	NA	False	TTTAAA	-23	NA	82183154	82198824	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_82183270_82189871_82189981_82190244_82190387_82190546_82190640_82192723_82192829_82197975
transcript_32478.known	chr15	-	1913	10	FSM	ENSMUSG00000022453.9	ENSMUST00000023088.8	1913	10	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_2	15.084944665313	430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGGGTACTATGACCTG	1344	False	NA	0	True	AATAAA	-31	NA	82223027	82213732	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82220970_82221143_82221587_82221724_82222438_82222516_82222952
transcript_3248.nnic	chr1	+	1583	4	NNC	ENSMUSG00000100908.2	novel	316	2	NA	NA	-119	9689	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	12.657891697365	30	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCGAGTGACAATGTCTC	NA	False	NA	9	True	ATTAAA	-23	NA	88387285	88402969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_88387678_88397558_88397777_88398642_88398830_88402183
transcript_32480.nnic	chr15	-	1960	9	NIC	ENSMUSG00000022453.9	novel	1913	10	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	2	29	junction_8	84.7758072801433	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGGGTACTATGACCTG	1220	False	NA	0	True	AATAAA	-31	NA	82223151	82213732	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82220970_82221143_82221587_82221724_82222952
transcript_32482.nic	chr15	-	1850	9	NIC	ENSMUSG00000022453.9	novel	1913	10	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_6	86.2554346113913	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGGGTACTATGACCTG	1235	False	NA	0	True	AATAAA	-31	NA	82223136	82213732	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82221587_82221724_82222438_82222516_82222952
transcript_32495.known	chr15	-	1020	7	FSM	ENSMUSG00000022453.9	ENSMUST00000230380.2	1020	7	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_3	11.7106314470608	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAATTCTTTTCCTACTT	1388	False	NA	NA	False	NA	NA	NA	82222983	82218817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_82219149_82219697_82219793_82220043_82220222_82220970_82221143_82221587_82221724_82222438_82222516_82222952
transcript_32496.known	chr15	-	833	7	FSM	ENSMUSG00000022453.9	ENSMUST00000229388.2	833	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	108.243039293783	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTCCTGGAAGAGTGTGC	1245	False	NA	NA	False	TATAAA	-9	NA	82223126	82219089	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_82219149_82219697_82219793_82220043_82220222_82220970_82221143_82221587_82221724_82222438_82222516_82223010
transcript_325.known	SIRV4	-	670	4	FSM	SIRV4A	SIRV403	670	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	3065.46367708958	13074	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGATATTTAGAGCGTA	NA	False	NA	NA	False	NA	NA	NA	15122	8322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV4_-_8373_8629_8991_13672_13829_15019
transcript_32503.known	chr15	-	704	6	FSM	ENSMUSG00000022453.9	ENSMUST00000229948.2	704	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	106.080346907427	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACCAGCCTGGAAGAAGAC	1363	False	NA	NA	False	NA	NA	NA	82223008	82218986	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_82219149_82219697_82219793_82220043_82220222_82221587_82221724_82222438_82222516_82222952
transcript_32509.known	chr15	+	485	3	FSM	ENSMUSG00000022452.17	ENSMUST00000160994.8	485	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	675.5	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGAGAGGTCGTCCCCAT	NA	False	NA	30	True	AATAAA	-12	NA	82223159	82233260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_82223287_82232100_82232242_82233043
transcript_32511.known	chr15	+	597	3	FSM	ENSMUSG00000022452.17	ENSMUST00000161892.2	597	3	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	632.5	1365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGCTTGGTTGCACTTTA	NA	False	NA	62	True	AATAAA	-44	NA	82230214	82233292	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_82230422_82232100_82232242_82233043
transcript_32516.known	chr15	+	705	3	FSM	ENSMUSG00000022452.17	ENSMUST00000023086.15	705	3	0	0	0	0	multi-exon	FALSE	canonical	3	1353	junction_2	125	16038	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGCTTGGTTGCACTTT	NA	False	NA	61	True	AATAAA	-43	NA	82230154	82233291	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_82230471_82232100_82232242_82233043
transcript_32517.known	chr15	+	2931	2	FSM	ENSMUSG00000049687.6	ENSMUST00000161178.2	2931	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATATATATATATATAAAT	NA	False	NA	NA	False	NA	NA	NA	82225058	82229944	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_82225305_82227259
transcript_32519.known	chr15	-	528	4	FSM	ENSMUSG00000022450.7	ENSMUST00000229537.2	528	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1846.02010341768	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTGTGATAAAATTGCACT	6345	False	NA	-45	True	AATAAA	-18	NA	82238390	82234372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_82234573_82235179_82235296_82236533_82236637_82238281
transcript_32520.known	chr15	-	590	3	FSM	ENSMUSG00000022450.7	ENSMUST00000023085.7	590	3	0	0	0	0	multi-exon	FALSE	canonical	3	3916	junction_1	175	25731	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGTCTCTCTTACTT	6212	False	NA	-13	True	GATAAA	-21	NA	82238523	82234340	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_82234573_82235179_82235296_82238281
transcript_32529.known	chr15	-	382	2	FSM	ENSMUSG00000022450.7	ENSMUST00000230494.2	382	2	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_1	0	378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAATTGCACTGGTGAACC	6280	False	NA	-37	True	AATAAA	-26	NA	82238455	82234364	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_82234573_82238281
transcript_32530.known	chr15	-	1141	1	FSM	ENSMUSG00000022450.7	ENSMUST00000229283.2	1141	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAACAAAACAAAAAA	6297	False	NA	NA	False	NA	NA	NA	82238438	82237297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_82237300_82238400
transcript_32531.known	chr15	-	895	2	FSM	ENSMUSG00000061740.9	ENSMUST00000229438.2	895	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	82264444	82259519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_82260243_82264272
transcript_32532.known	chr15	+	2968	1	FSM	ENSMUSG00000047347.8	ENSMUST00000051363.8	2968	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1334	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGCAAAAAAATAATTAATTG	NA	False	NA	NA	False	AATAAA	-11	NA	82400511	82403479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_82400500_82403500
transcript_32534.nnic	chr15	+	703	3	NIC	ENSMUSG00000100199.2	novel	1118	4	NA	NA	61	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	1.5	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTGGTCCTATGAGGC	NA	False	NA	NA	False	AATAAA	-20	NA	82783341	82790019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_+_82783470_82785916_82786016_82789543
transcript_32535.known	chr15	-	287	2	FSM	ENSMUSG00000100552.2	ENSMUST00000186748.2	287	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAACCAAACC	NA	False	NA	NA	False	NA	NA	NA	82871913	82866984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_82867175_82871816
transcript_32539.known	chr15	+	1371	12	FSM	ENSMUSG00000058586.13	ENSMUST00000078218.11	1371	12	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_2	9.92534113742268	591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCCAAGTGGCTGTTGTC	NA	False	NA	17	True	AATAAA	-18	NA	82984404	83000875	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_82984549_82985844_82985995_82986072_82986187_82986499_82986542_82986825_82986846_82987134_82987210_82988509_82988623_82989811_82989892_82996410_82996446_82998557_82998641_82999767_82999865_83000457
transcript_32540.known	chr15	+	578	2	FSM	ENSMUSG00000058586.13	ENSMUST00000169461.2	578	2	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCCCATCTTCACTGAGT	NA	False	NA	0	True	AATAAA	-1	NA	82999687	83000858	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_82999865_83000457
transcript_32541.known	chr15	-	4363	7	FSM	ENSMUSG00000018040.10	ENSMUST00000018184.10	4363	7	0	0	0	0	multi-exon	FALSE	canonical	3	832	junction_3	73.7437379639037	2674	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	83007002	82997633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_83001173_83001749_83001949_83002277_83002376_83003385_83003504_83004092_83004219_83006032_83006176_83006862
transcript_32542.known	chr15	-	492	3	FSM	ENSMUSG00000018040.10	ENSMUST00000166019.2	492	3	0	0	0	0	multi-exon	FALSE	canonical	3	868	junction_1	91	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGCCTTGAACCTGAAGGG	NA	False	NA	NA	False	NA	NA	NA	83006350	83003455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_83003504_83004092_83004219_83006032
transcript_32543.known	chr15	-	3299	9	FSM	ENSMUSG00000041815.15	ENSMUST00000058793.14	3299	9	0	0	0	0	multi-exon	FALSE	canonical	3	462	junction_6	74.2839779158332	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAGCTATAATGTCTTT	NA	False	NA	-11	True	AATAAA	-17	NA	83033585	83010176	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
transcript_32546.known	chr15	-	3157	8	FSM	ENSMUSG00000041815.15	ENSMUST00000100375.11	3157	8	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_6	194.457277192347	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTGAGCTATAATGTCT	NA	False	NA	-13	True	AATAAA	-15	NA	83033532	83010178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83022332_83022724_83033395
transcript_32549.known	chr15	-	2393	3	FSM	ENSMUSG00000041815.15	ENSMUST00000149802.2	2393	3	0	0	0	0	multi-exon	FALSE	canonical	3	496	junction_1	85	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGGAATTTCTGAGCTC	NA	False	NA	NA	False	NA	NA	NA	83033530	83019888	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_83021756_83022332_83022724_83033395
transcript_32550.known	chr15	+	151	1	FSM	ENSMUSG00000065176.3	ENSMUST00000083242.3	151	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCCCCTAATTCTACAAGAA	401	False	NA	NA	False	NA	NA	NA	83033844	83033995	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_83033800_83034000
transcript_32553.known	chr15	+	2459	1	FSM	ENSMUSG00000116508.2	ENSMUST00000231106.2	2459	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCCACCTGAGACTCTGC	NA	False	NA	NA	False	AATAAA	-18	NA	83056550	83059009	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_83056600_83059000
transcript_32558.known	chr15	-	1974	3	FSM	ENSMUSG00000047878.14	ENSMUST00000164614.3	1974	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	34	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCCTGGCTTTTTTTTTT	2266	False	NA	NA	False	NA	NA	NA	83135932	83111080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_83112796_83114714_83114859_83135817
transcript_32559.known	chr15	-	2092	3	FSM	ENSMUSG00000047878.14	ENSMUST00000049530.14	2092	3	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	20.5	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAATGCCTCATGGTCACA	2223	False	NA	-8	True	AATAAA	-16	NA	83135975	83110922	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_83112796_83114714_83114859_83135900
transcript_3256.nnic	chr1	+	1719	3	NNC	ENSMUSG00000100908.2	novel	316	2	NA	NA	-112	9689	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	9	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCGAGTGACAATGTCTC	NA	False	NA	9	True	ATTAAA	-23	NA	88387292	88402969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_88388039_88398642_88398830_88402183
transcript_32562.nic	chr15	-	453	2	ISM	ENSMUSG00000047878.14	ENSMUST00000049530.14	2092	3	-39	3597	-39	92	5prime_fragment	FALSE	canonical	3	57	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTAGTGGTGCATGCTT	2184	False	NA	NA	False	NA	NA	NA	83136014	83114519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_83114859_83135900
transcript_32563.known	chr15	-	2461	16	FSM	ENSMUSG00000054277.9	ENSMUST00000226124.2	2461	16	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_5	14.6272196796095	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGATTTCAGATGACT	3598	False	NA	-108	True	AGTAAA	-26	NA	83234375	83184021	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_83184904_83187303_83187426_83191081_83191173_83192253_83192378_83194450_83194583_83197669_83197814_83198540_83198670_83206774_83206915_83208304_83208352_83211805_83211866_83214719_83214808_83216886_83216971_83218678_83218811_83220854_83220928_83227222_83227342_83234281
transcript_32571.known	chr15	-	1186	3	FSM	ENSMUSG00000054277.9	ENSMUST00000226816.2	1186	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	31.5	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACGGTTGCCTGTGTTGTC	NA	False	NA	-27	True	AATATA	-15	NA	83189542	83183940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_83184904_83187303_83187426_83189441
transcript_32577.known	chr15	-	2270	4	FSM	ENSMUSG00000075511.10	ENSMUST00000100370.2	2270	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	6.97614984548545	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAAGGAAAGATGAAG	250	False	NA	NA	False	NA	NA	NA	83251478	83241760	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_83243152_83248020_83248130_83249229_83249712_83251190
transcript_32579.nic	chr15	-	2246	3	NIC	ENSMUSG00000075511.10	novel	2270	4	NA	NA	-52	-1	intron_retention	FALSE	canonical	3	28	junction_1	13	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTCCAGCTTAAGTCTC	193	False	NA	NA	False	AATAAA	-19	NA	83251535	83241735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_83243152_83249229_83249715_83251190
transcript_3258.nnic	chr1	+	1344	3	NNC	ENSMUSG00000100908.2	novel	316	2	NA	NA	-98	9689	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	15.5	31	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCGAGTGACAATGTCTC	NA	False	NA	9	True	ATTAAA	-23	NA	88387306	88402969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_88387678_88398642_88398830_88402183
transcript_32582.known	chr15	-	4969	3	FSM	ENSMUSG00000075511.10	ENSMUST00000178628.9	4969	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	23.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTCTCAAATGTTTGTCA	245	False	NA	0	True	NA	NA	NA	83251483	83238047	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_83242239_83249229_83249715_83251190
transcript_32589.known	chr15	-	3186	11	FSM	ENSMUSG00000016664.17	ENSMUST00000165095.9	3186	11	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_10	172.10531659423	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTGCATCCACCCTCAT	NA	False	NA	4	True	AATAAA	-31	NA	83317016	83260318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_83261932_83263199_83263397_83263884_83264008_83265962_83266085_83269187_83269309_83270862_83271039_83272715_83272872_83274623_83274860_83276701_83276859_83286067_83286201_83316864
transcript_32590.known	chr15	-	3103	11	FSM	ENSMUSG00000016664.17	ENSMUST00000231184.2	3103	11	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_10	180.758512939225	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGCCTTGCATCCACCC	NA	False	NA	0	True	AATAAA	-27	NA	83317025	83260322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_83261932_83263199_83263397_83263884_83264008_83265962_83266085_83269187_83269309_83270862_83271039_83272715_83272872_83274623_83274860_83276701_83276859_83286067_83286201_83316952
transcript_32591.known	chr15	-	3693	11	FSM	ENSMUSG00000016664.17	ENSMUST00000171436.8	3693	11	0	0	0	0	multi-exon	FALSE	canonical	3	507	junction_5	57.2486681067778	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGTCACTTTGCTCAG	7107	False	NA	NA	False	AGTAAA	-19	NA	83348807	83259807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_83261932_83263199_83263397_83263884_83264008_83265962_83266085_83269187_83269309_83270862_83271039_83272715_83272872_83274623_83274860_83276701_83276859_83286067_83286201_83348659
transcript_32595.known	chr15	-	2060	12	FSM	ENSMUSG00000022442.17	ENSMUST00000016897.12	2060	12	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_11	7.21110255092798	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGACTTTATCTTATTATT	NA	False	NA	NA	False	NA	NA	NA	83395094	83367969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_83368515_83373669_83373834_83376743_83376831_83380472_83380617_83381520_83381630_83382352_83382488_83384122_83384304_83386281_83386491_83389450_83389568_83389683_83389845_83390480_83390529_83394934
transcript_32606.known	chr15	+	942	5	FSM	ENSMUSG00000016758.5	ENSMUST00000016902.5	942	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	7.58287544405155	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCCTTAGGTCGTCCTCT	NA	False	NA	NA	False	AATAAA	-16	NA	83411062	83428835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_83411138_83425495_83425644_83427265_83427365_83427780_83427899_83428333
transcript_32607.known	chr15	+	550	5	FSM	ENSMUSG00000016758.5	ENSMUST00000229165.2	550	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.247221879202	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTATTTGCAGCTTCA	NA	False	NA	NA	False	NA	NA	NA	83417744	83428402	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_83417861_83425495_83425644_83427265_83427365_83427780_83427899_83428333
transcript_32615.known	chr15	+	837	4	FSM	ENSMUSG00000041736.8	ENSMUST00000047419.8	837	4	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_1	54.5119762580257	1834	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACTCTGTACTTAGTGGA	NA	False	NA	21	True	AATAAA	-21	NA	83447792	83458404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_83447846_83455585_83455797_83456400_83456540_83457970
transcript_32620.known	chr15	-	688	3	FSM	ENSMUSG00000048755.10	ENSMUST00000229724.2	688	3	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_2	44	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGTTCTAGGCTCGATCA	NA	False	NA	NA	False	NA	NA	NA	83437088	83432027	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_83432144_83433318_83433537_83436734
transcript_32621.known	chr15	-	3774	14	FSM	ENSMUSG00000016757.12	ENSMUST00000016901.5	3774	14	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_9	15.0977093760069	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTCAGGTACTTCACATG	4671	False	NA	NA	False	AATATA	-19	NA	83479358	83459290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_83461250_83461947_83462087_83462835_83462905_83464268_83464351_83464695_83464848_83465868_83465981_83466245_83466441_83466546_83466664_83468856_83468934_83471051_83471186_83471274_83471435_83472703_83472903_83475579_83475750_83479149
transcript_32632.known	chr15	-	1319	8	FSM	ENSMUSG00000018865.10	ENSMUST00000229826.2	1319	8	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_2	10.0285307284481	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAGTGCATTTCCAGGGG	NA	False	NA	NA	False	AATAAA	-16	NA	83989810	83961345	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_83961784_83962969_83963099_83964387_83964527_83970800_83970896_83974159_83974287_83974792_83974874_83976490_83976622_83989631
transcript_32635.known	chr15	-	2383	7	FSM	ENSMUSG00000018865.10	ENSMUST00000082365.6	2383	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	29.8105126870818	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTTTGTCTGTGTGC	NA	False	NA	-1	True	AATAAA	-17	NA	83989955	83960297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_83961784_83964387_83964527_83970800_83970896_83974159_83974287_83974792_83974874_83976490_83976622_83989631
transcript_3264.known	chr1	-	471	3	FSM	ENSMUSG00000099553.2	ENSMUST00000190783.2	471	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCTTTTAGTTCTTAGCA	NA	False	NA	NA	False	AATAAA	-21	NA	88390330	88371690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_88371959_88373995_88374108_88390239
transcript_32654.known	chr15	+	3784	13	FSM	ENSMUSG00000022438.7	ENSMUST00000023072.7	3784	13	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_4	7.38052994182818	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGTGCTTTGATCAGACC	NA	False	NA	79	True	AATAAA	-16	NA	84116243	84199889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_84116388_84155431_84155522_84157699_84157771_84166962_84167066_84174587_84174729_84176982_84177099_84179757_84179817_84182166_84182187_84187608_84187671_84188035_84188105_84193053_84193156_84196903_84196977_84197155
transcript_32657.known	chr15	+	2619	13	FSM	ENSMUSG00000022439.10	ENSMUST00000023074.9	2619	13	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_2	5.54464205837992	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCATGACTTAATGACAGCC	NA	False	NA	NA	False	AATAAA	-20	NA	84208920	84227143	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_84209033_84211188_84211285_84212495_84212561_84213064_84213168_84214223_84214365_84215179_84215296_84216491_84216548_84216891_84216915_84218542_84218602_84218786_84218856_84221985_84222088_84225054_84225128_84225539
transcript_3266.known	chr1	+	479	3	FSM	ENSMUSG00000097398.3	ENSMUST00000181016.3	479	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	3	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTTGGTCTTGGCTCCTT	NA	False	NA	17	True	NA	NA	NA	88682611	88683458	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_88682681_88682805_88683013_88683255
transcript_32660.nnic	chr15	+	1703	9	NNC	ENSMUSG00000036106.16	novel	1830	8	NA	NA	-6429	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	42.0979141407267	66	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCCTGTCTGCCCCCTGGT	8441	False	NA	4	True	AATAAA	-14	NA	84547391	84587873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_84547463_84565400_84565521_84572103_84572185_84577664_84577714_84577959_84578018_84583321_84583414_84583791_84583933_84585564_84585701_84586918
transcript_32662.nnic	chr15	+	1710	9	NNC	ENSMUSG00000036106.16	novel	1830	8	NA	NA	-320	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	47.5861061655606	58	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCCTGTCTGCCCCCTGGT	NA	False	NA	4	True	AATAAA	-14	NA	84564882	84587873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_84564961_84565400_84565521_84572103_84572185_84577664_84577714_84577959_84578018_84583321_84583414_84583791_84583933_84585564_84585701_84586918
transcript_32664.nnic	chr15	+	1577	8	NNC	ENSMUSG00000036106.16	novel	1719	9	NA	NA	-6423	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	49.7864828799045	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCCTGTCTGCCCCCTGGT	8447	False	NA	4	True	AATAAA	-14	NA	84547397	84587873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_84547463_84572103_84572185_84577664_84577714_84577959_84578018_84583321_84583414_84583791_84583933_84585564_84585701_84586918
transcript_32665.known	chr15	+	1830	8	FSM	ENSMUSG00000036106.16	ENSMUST00000065499.5	1830	8	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_7	10.3844467687921	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCCTGTCTGCCCCCTGGT	NA	False	NA	4	True	AATAAA	-14	NA	84565202	84587873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_84565521_84572103_84572185_84577664_84577714_84577959_84578018_84583321_84583414_84583791_84583933_84585564_84585701_84586918
transcript_32668.known	chr15	+	1527	13	FSM	ENSMUSG00000078954.10	ENSMUST00000006029.11	1527	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	73.837800843019	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGGGTTTTGTGCTTCTG	NA	False	NA	12	True	ATTAAA	-19	NA	84604252	84656408	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_84604309_84614744_84614755_84617098_84617231_84624908_84624997_84626093_84626226_84629969_84630057_84640538_84640638_84641220_84641332_84649873_84649948_84650511_84650590_84651301_84651431_84654197_84654302_84655981
transcript_3267.known	chr1	+	358	3	FSM	ENSMUSG00000097398.3	ENSMUST00000180596.2	358	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	1	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAATTAAAGTTGAACCTT	NA	False	NA	-10	True	NA	NA	NA	88682675	88683431	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_88682774_88682928_88683013_88683255
transcript_32674.known	chr15	+	1544	12	FSM	ENSMUSG00000078954.10	ENSMUST00000172307.9	1544	12	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	58.989143138924	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGGGTTTTGTGCTTCTG	NA	False	NA	12	True	ATTAAA	-19	NA	84604252	84656408	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_84604329_84617091_84617231_84624908_84624997_84626093_84626226_84629969_84630057_84640538_84640638_84641220_84641332_84649873_84649948_84650511_84650590_84651301_84651431_84654197_84654302_84655981
transcript_32678.known	chr15	+	2446	7	FSM	ENSMUSG00000078954.10	ENSMUST00000167499.8	2446	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	75.7781850754776	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAAACAAAACAACA	NA	False	NA	NA	False	NA	NA	NA	84604283	84643101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_84604309_84617096_84617231_84624908_84624997_84626093_84626226_84629969_84630057_84640538_84640638_84641220
transcript_32682.nic	chr15	-	791	2	ISM	ENSMUSG00000116396.2	ENSMUST00000229841.2	1237	3	1342	-52	1342	52	3prime_fragment	FALSE	canonical	1	2	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTGCACGAATGTTCT	NA	False	NA	NA	False	AATATA	-17	NA	84603125	84598777	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_84599341_84602897
transcript_32683.known	chr15	+	1464	11	FSM	ENSMUSG00000078954.10	ENSMUST00000168811.2	1464	11	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_5	23.8748821986623	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGTGGGGGTTTTGTGCTT	1022	False	NA	9	True	ATTAAA	-16	NA	84617092	84656405	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_84617231_84624908_84624997_84626093_84626226_84629969_84630057_84640538_84640638_84641220_84641332_84649873_84649948_84650511_84650590_84651301_84651431_84654197_84654302_84655981
transcript_32684.known	chr15	-	3639	13	FSM	ENSMUSG00000016624.16	ENSMUST00000159939.8	3639	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	3.72677996249965	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCTCGGTGGTCCTGTGT	NA	False	NA	-7	True	ATTAAA	-10	NA	84740250	84669584	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_84671651_84675265_84675370_84675554_84675631_84675983_84676143_84678096_84678120_84679280_84679336_84681523_84681601_84682843_84682896_84687654_84687787_84688960_84689312_84692266_84692360_84738939_84739006_84739865
transcript_32686.nnic	chr15	-	2038	3	NNC	ENSMUSG00000100967.2	novel	8038	2	NA	NA	-3196	-2235	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTTGGTCATGGTGTC	NA	False	NA	NA	False	NA	NA	NA	84807435	84796873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_84798533_84800095_84800307_84807267
transcript_3269.nic	chr1	+	625	2	NIC	ENSMUSG00000097398.3	novel	479	3	NA	NA	-21	0	intron_retention	FALSE	canonical	3	14	junction_1	0	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTTGGTCTTGGCTCCTT	NA	False	NA	17	True	NA	NA	NA	88682590	88683458	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_88683013_88683255
transcript_32690.known	chr15	+	4766	8	FSM	ENSMUSG00000016619.11	ENSMUST00000165443.4	4766	8	0	0	0	0	multi-exon	FALSE	canonical	3	399	junction_4	38.703477668983	289	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTTGGGTACTGTTCTGTT	NA	False	NA	19	True	AATAAA	-19	NA	84807611	84827164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_84807852_84811568_84811648_84813572_84813657_84817735_84817920_84819064_84819725_84821687_84821770_84822558_84822678_84823846
transcript_32696.known	chr15	+	1093	6	FSM	ENSMUSG00000022435.7	ENSMUST00000023070.7	1093	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.85472369909914	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTCCAGAGTGAAAGGAG	NA	False	NA	NA	False	AATAAA	-13	NA	84901341	84906748	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_84901473_84902226_84902383_84903510_84903791_84904741_84904825_84905463_84905597_84906438
transcript_32701.known	chr15	+	2518	9	FSM	ENSMUSG00000022434.9	ENSMUST00000023069.9	2518	9	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_8	15.0742951742362	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTGCTCAGTTTTTC	NA	False	NA	8	True	AATAAA	-15	NA	84921289	84947031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_84921446_84928980_84929037_84929820_84930074_84932559_84932782_84934894_84935024_84937771_84938058_84939854_84939888_84942942_84943027_84945732
transcript_32706.known	chr15	-	4047	25	FSM	ENSMUSG00000022432.8	ENSMUST00000023068.8	4047	25	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_19	18.7071269098764	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTTACTCTGGTCTTGT	NA	False	NA	-6	True	TATAAA	-17	NA	85016165	84948889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_84949307_84950419_84950531_84951937_84952008_84953845_84953998_84954980_84955136_84955782_84955940_84970293_84970390_84973792_84973947_84975072_84975219_84976143_84976286_84980846_84980954_84981705_84981823_84982096_84982235_84991118_84991266_84994852_84995033_84996887_84997074_84998879_84999088_85000039_85000123_85004818_85004960_85005789_85006049_85007921_85008161_85011668_85011873_85011959_85012073_85013871_85014061_85016029
transcript_32710.nic	chr15	-	935	5	ISM	ENSMUSG00000022432.8	ENSMUST00000023068.8	4047	25	-21	58999	-21	-52792	5prime_fragment	FALSE	canonical	3	115	junction_1	12.49749974995	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTATGGCTTTTATTTA	NA	False	NA	NA	False	AATAAA	-16	NA	85016186	85007888	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_85008161_85011668_85011873_85011959_85012073_85013871_85014061_85016029
transcript_32711.nic	chr15	-	649	4	ISM	ENSMUSG00000022432.8	ENSMUST00000023068.8	4047	25	-21	62793	-21	-56586	5prime_fragment	FALSE	canonical	3	116	junction_3	11.8977121983832	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAGAAAGAAGAGGTAAGG	NA	False	NA	NA	False	NA	NA	NA	85016186	85011682	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_85011873_85011959_85012073_85013871_85014061_85016029
transcript_32712.nic	chr15	-	570	4	ISM	ENSMUSG00000022432.8	ENSMUST00000023068.8	4047	25	-21	62872	-21	-56665	5prime_fragment	FALSE	canonical	3	116	junction_3	11.8977121983832	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTACAAAAAGCTGAAGAAGA	NA	False	NA	NA	False	AAAAAG	-4	NA	85016186	85011761	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_85011873_85011959_85012073_85013871_85014061_85016029
transcript_32714.nnic	chr15	-	618	3	NIC	ENSMUSG00000022432.8	novel	4047	25	NA	NA	-20	-43612	combination_of_known_splicesites	FALSE	canonical	3	11	junction_2	66	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCAAATTGTATTTGTAAG	NA	False	NA	NA	False	AGTAAA	-20	NA	85016185	84998708	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_84999088_85000039_85000123_85016029
transcript_32716.known	chr15	+	3659	17	FSM	ENSMUSG00000006369.15	ENSMUST00000057410.14	3659	17	0	0	0	0	multi-exon	TRUE	canonical	3	136	junction_16	137.738202761616	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATGACGTTTTTATCATT	NA	False	NA	NA	False	AATAAA	-13	NA	85090149	85170736	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_85090414_85106104_85106211_85108450_85108587_85111168_85111341_85113760_85113818_85114999_85115102_85115617_85115756_85116739_85116878_85121808_85121953_85122663_85122793_85123494_85123621_85124820_85124941_85126211_85126344_85128383_85128508_85147459_85147603_85149450_85149583_85169240
transcript_32717.known	chr15	+	2273	15	FSM	ENSMUSG00000006369.15	ENSMUST00000109432.4	2273	15	0	0	0	0	multi-exon	FALSE	canonical	3	356	junction_14	63.5701845785187	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCTTGTACCTTGGTTT	NA	False	NA	35	True	AATAAA	-25	NA	85090205	85136086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_85090414_85106104_85106211_85108450_85108587_85111168_85111341_85113760_85113818_85114999_85115102_85115617_85115756_85116739_85116878_85121808_85121953_85122663_85122793_85123494_85123621_85124820_85124941_85126211_85126344_85128383_85128508_85135645
transcript_32726.known	chr15	+	1937	12	FSM	ENSMUSG00000016541.11	ENSMUST00000163242.3	1937	12	0	0	0	0	multi-exon	FALSE	canonical	3	1134	junction_3	91.244743989915	2805	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGGACCCTTGATTGGA	NA	False	NA	25	True	AATAAA	-33	NA	85220445	85347413	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_85220782_85243654_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271358_85275838_85275948_85277537_85277708_85322302_85322367_85346480_85346669_85347121
transcript_3274.known	chr1	+	603	3	FSM	ENSMUSG00000099378.2	ENSMUST00000186180.2	603	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTTGACTTGGATTCCT	NA	False	NA	NA	False	NA	NA	NA	88943834	88949932	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_88944095_88944267_88944372_88949693
transcript_32748.known	chr15	-	786	5	FSM	ENSMUSG00000064284.13	ENSMUST00000134631.8	786	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	144.324937207677	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGACCTCCTTTGATTGAC	8128	False	NA	NA	False	NA	NA	NA	85695855	85691400	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_85691740_85692456_85692569_85693412_85693526_85695043_85695250_85695839
transcript_32749.nnic	chr15	-	1112	5	NNC	ENSMUSG00000064284.13	novel	997	5	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	139.440623564297	669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGTTTGAGTCACTG	8067	False	NA	0	True	ATTAAA	-15	NA	85695916	85691172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_85691740_85692456_85692569_85693412_85693526_85695102_85695250_85695743
transcript_3275.known	chr1	+	4995	6	FSM	ENSMUSG00000036206.13	ENSMUST00000066279.11	4995	6	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	14.3164241345386	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTTGGACATTTCAAC	NA	False	NA	12	True	ATTAAA	-22	NA	88998136	89082790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_88998320_89034979_89035059_89065280_89065526_89071271_89073629_89079921_89080111_89080848
transcript_32750.known	chr15	-	761	5	FSM	ENSMUSG00000064284.13	ENSMUST00000144067.8	761	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	131.723906334424	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGAGCTCTAGGTCTGGC	8138	False	NA	NA	False	NA	NA	NA	85695845	85691444	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_85691740_85692456_85692569_85693412_85693526_85695102_85695250_85695751
transcript_32751.known	chr15	-	997	5	FSM	ENSMUSG00000064284.13	ENSMUST00000071876.13	997	5	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_4	106.509389257473	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGTTTGAGTCACTG	8086	False	NA	0	True	ATTAAA	-15	NA	85695897	85691172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_85691740_85692456_85692569_85693412_85693526_85695102_85695250_85695839
transcript_32755.known	chr15	-	566	4	FSM	ENSMUSG00000064284.13	ENSMUST00000150995.8	566	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	150.534602888062	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGTGTATCCAGCTGGAG	8085	False	NA	NA	False	NA	NA	NA	85695898	85691457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_85691740_85692456_85692569_85693412_85693526_85695839
transcript_32758.known	chr15	-	421	4	FSM	ENSMUSG00000064284.13	ENSMUST00000154814.2	421	4	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_3	119.678272417715	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTTGCCCTCCCCCCAA	8123	False	NA	NA	False	NA	NA	NA	85695860	85692428	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_85692569_85693412_85693526_85695102_85695250_85695839
transcript_32761.known	chr15	+	3749	14	FSM	ENSMUSG00000035944.18	ENSMUST00000146088.8	3749	14	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_3	3.06729262113491	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAAATGTAAATAGCAGT	NA	False	NA	NA	False	TTTAAA	-6	NA	85716506	85743023	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_85716621_85717347_85717426_85718690_85718773_85720220_85720393_85722906_85723081_85725665_85725742_85728652_85728773_85730531_85730592_85731835_85731875_85735717_85735800_85737020_85737187_85737785_85737946_85738176_85738251_85740671
transcript_32767.known	chr15	+	2641	12	FSM	ENSMUSG00000022385.12	ENSMUST00000170629.3	2641	12	0	0	0	0	multi-exon	FALSE	canonical	3	528	junction_1	58.9672832668062	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATTATAAAGTTTATTAAA	7137	False	NA	-13	True	ATTAAA	-18	NA	85743945	85760731	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_85743996_85744204_85744297_85746101_85746160_85746268_85746897_85748307_85748464_85751675_85751803_85752880_85753259_85755709_85755783_85757840_85758078_85759175_85759420_85759736_85759953_85760349
transcript_32771.known	chr15	+	2692	11	FSM	ENSMUSG00000022385.12	ENSMUST00000231074.2	2692	11	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_6	54.9377829913076	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGGACGTGTAGAGCTG	7338	False	NA	30	True	ATTAAA	-41	NA	85744146	85760774	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_85744297_85746101_85746160_85746268_85746897_85748307_85748464_85751675_85751803_85752880_85753259_85755709_85755783_85757840_85758078_85759175_85759420_85759736_85759953_85760349
transcript_32775.known	chr15	+	1526	11	FSM	ENSMUSG00000022386.13	ENSMUST00000023019.12	1526	11	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_4	10.36532681588	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCATGTGTCTGGGGCTTG	NA	False	NA	NA	False	AATAAA	-14	NA	85763520	85781593	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_85763660_85766874_85767041_85769286_85769394_85774405_85774529_85776767_85776941_85778026_85778081_85778154_85778222_85779126_85779228_85780560_85780706_85781035_85781119_85781225
transcript_32784.known	chr15	-	4518	13	FSM	ENSMUSG00000035891.17	ENSMUST00000044332.16	4518	13	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_10	4.62105687767059	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCCTCCCCTCATCCTC	NA	False	NA	-14	True	AATAAA	-17	NA	86070342	86023329	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_86025814_86026882_86027092_86028722_86028929_86029688_86029766_86030485_86030592_86033478_86033632_86035735_86035811_86039174_86039321_86040788_86040853_86043294_86043421_86049168_86049292_86050022_86050137_86069707
transcript_32785.known	chr15	-	2162	8	FSM	ENSMUSG00000035891.17	ENSMUST00000156546.2	2162	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_7	5.62429133857986	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTGACTTGCAAACGGG	NA	False	NA	NA	False	TATAAA	-35	NA	86036649	86024521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_86025814_86026882_86027092_86028722_86028929_86029688_86029766_86030485_86030592_86033478_86033632_86035735_86035811_86036605
transcript_32789.nnic	chr15	-	2790	3	NNC	ENSMUSG00000035891.17	novel	2162	8	NA	NA	8728	-10	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_2	5.5	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCAGACTATGGCCTCC	6271	False	NA	-24	True	AATAAA	-7	NA	86027921	86023339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_86025814_86026882_86027092_86027814
transcript_3279.nnic	chr1	+	690	3	NNC	ENSMUSG00000092627.3	novel	1372	2	NA	NA	-78	679	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	0	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATCGACCCGATTCTTTG	NA	False	NA	14	True	GATAAA	-21	NA	89857877	89860263	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_89858176_89859728_89859871_89860013
transcript_32790.nnic	chr15	-	519	3	NNC	ENSMUSG00000035891.17	novel	2162	8	NA	NA	8728	-1089	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_2	5.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGCTTTGTCAACAGTTC	6271	False	NA	NA	False	NA	NA	NA	86027921	86025610	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_86025814_86026882_86027092_86027814
transcript_32794.nnic	chr15	+	2218	14	NNC	ENSMUSG00000051864.11	novel	3229	13	NA	NA	-40	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_13	22.9039672540879	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCTTTTTATTGCATT	NA	False	NA	8	True	AATAAA	-17	NA	86098619	86382704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_86098838_86118930_86118988_86119716_86120055_86123317_86123495_86176334_86176406_86183847_86183977_86185746_86185810_86195927_86196043_86235854_86235965_86250805_86250882_86275277_86275406_86333392_86333489_86381013_86381139_86382189
transcript_32795.known	chr15	+	3229	13	FSM	ENSMUSG00000051864.11	ENSMUST00000063414.9	3229	13	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_12	8.71779788708135	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCTTTTTATTGCATT	NA	False	NA	8	True	AATAAA	-17	NA	86098659	86382704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_86098838_86118930_86118988_86119716_86120055_86123317_86123495_86176334_86176406_86183847_86183977_86185746_86185810_86195927_86196043_86235854_86235965_86250805_86250882_86275277_86275406_86333392_86333489_86381013
transcript_32799.nic	chr15	+	1138	8	ISM	ENSMUSG00000051864.11	ENSMUST00000063414.9	3229	13	-40	186692	-40	19649	5prime_fragment	FALSE	canonical	3	72	junction_4	6.79735843049733	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCGTGGTCTTCATTTGC	NA	False	NA	NA	False	AATAAA	-18	NA	86098619	86196012	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_+_86098838_86118930_86118988_86119716_86120055_86123317_86123495_86176334_86176406_86183847_86183977_86185746_86185810_86195927
transcript_3280.known	chr1	+	1372	2	FSM	ENSMUSG00000092627.3	ENSMUST00000173856.2	1372	2	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATAAAGCGAGTCTTTTA	NA	False	NA	-14	True	NA	NA	NA	89857955	89859584	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_89858176_89858432
transcript_32802.known	chr15	+	933	3	FSM	ENSMUSG00000115930.2	ENSMUST00000229090.2	933	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTTGATGACAAGATTTAC	NA	False	NA	NA	False	NA	NA	NA	87127750	87138224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_87128261_87128725_87128758_87137833
transcript_32803.known	chr15	+	2603	4	FSM	ENSMUSG00000054863.10	ENSMUST00000068088.8	2603	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.09120616516523	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGGCTTTTGTTCCCTGG	NA	False	NA	NA	False	AATAAA	-21	NA	87509430	87643565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_87509688_87565680_87565831_87604702_87604831_87641497
transcript_32816.known	chr15	+	5425	3	FSM	ENSMUSG00000034333.16	ENSMUST00000041297.15	5425	3	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_1	12	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGACTGATGATGGCTT	NA	False	NA	35	True	ATTAAA	-22	NA	88635862	88668719	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_88636006_88638962_88639137_88663611
transcript_32817.known	chr15	+	556	3	FSM	ENSMUSG00000034333.16	ENSMUST00000160975.2	556	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	73	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTGGGAATCTTATTTT	NA	False	NA	NA	False	AATAAA	-15	NA	88635962	88655079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_88636006_88638962_88639137_88654740
transcript_32818.known	chr15	-	2130	10	FSM	ENSMUSG00000035845.18	ENSMUST00000162183.8	2130	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	14.1691718917785	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGTGTCTTGTTGTTGGTC	9244	False	NA	0	True	AATAAA	-17	NA	88703521	88689446	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_88690258_88690601_88690678_88690760_88690925_88695499_88695724_88696258_88696363_88698656_88698852_88699496_88699671_88700060_88700194_88700269_88700458_88703460
transcript_3282.nnic	chr1	+	833	2	NNC	ENSMUSG00000092627.3	novel	1372	2	NA	NA	-78	679	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATCGACCCGATTCTTTG	NA	False	NA	14	True	GATAAA	-21	NA	89857877	89860263	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_89858176_89859728
transcript_32822.nnic	chr15	-	1826	8	NIC	ENSMUSG00000035845.18	novel	1793	8	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	14.7592931637622	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGTGTCTTGTTGTTGGT	9219	False	NA	-1	True	AATAAA	-16	NA	88703546	88689447	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_88690258_88690601_88690678_88690760_88690925_88698656_88698852_88699496_88699671_88700060_88700194_88700269_88700458_88703460
transcript_32824.nic	chr15	-	1536	7	ISM	ENSMUSG00000035845.18	ENSMUST00000162183.8	2130	10	-25	5621	-25	3743	5prime_fragment	FALSE	canonical	0	0	junction_2	14.8548533034381	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTCGGTGTCTCTTCCTG	9219	False	NA	NA	False	GATAAA	-44	NA	88703546	88695067	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_88695724_88696258_88696363_88698656_88698852_88699496_88699671_88700060_88700194_88700269_88700458_88703460
transcript_32827.known	chr15	-	1793	8	FSM	ENSMUSG00000035845.18	ENSMUST00000043087.15	1793	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	14.4193747210806	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGTGTCTTGTTGTTGGT	9277	False	NA	-1	True	AATAAA	-16	NA	88703488	88689447	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_88690258_88690601_88690678_88690760_88690925_88698631_88698852_88699496_88699671_88700060_88700194_88700269_88700458_88703460
transcript_32829.known	chr15	+	1366	10	FSM	ENSMUSG00000023272.5	ENSMUST00000024042.5	1366	10	0	0	0	0	multi-exon	FALSE	canonical	3	902	junction_1	99.7619388566824	2267	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGACGTGTTGGTTTGTTT	NA	False	NA	17	True	AATAAA	-26	NA	88703848	88710886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_88704038_88704133_88704217_88704731_88704843_88705337_88705430_88706161_88706339_88707269_88707366_88707944_88708029_88708850_88708947_88709352_88709494_88710589
transcript_3283.known	chr1	-	2060	12	FSM	ENSMUSG00000026301.17	ENSMUST00000189690.7	2060	12	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_8	12	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTCAGTAATTTGGTCAC	NA	False	NA	-4	True	AATAAA	-17	NA	90017866	89969856	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_89970465_89973313_89973553_89975510_89975689_89980109_89980197_89994446_89994647_89998233_89998342_90001468_90001552_90005528_90005597_90008581_90008675_90009037_90009145_90017196_90017273_90017653
transcript_32830.known	chr15	+	2427	6	FSM	ENSMUSG00000035828.12	ENSMUST00000042818.11	2427	6	0	0	0	0	multi-exon	TRUE	canonical	3	800	junction_3	47.4021096576935	476	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTCTGTTTATTGGACT	NA	False	NA	30	True	ATTAAA	-20	NA	88746388	88749929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_88746956_88747040_88747151_88747243_88747295_88747381_88747752_88748518_88748696_88748777
transcript_32836.nnic	chr15	+	599	3	Antisense	novelGene_ENSMUSG00000022388.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGATGTGTAGTGCACTGG	NA	False	NA	NA	False	AATATA	-16	NA	88775450	88783671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr15_+_88775663_88781763_88781910_88783430
transcript_32838.nnic	chr15	-	1217	2	NNC	ENSMUSG00000093394.2	novel	1234	2	NA	NA	304	2	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCAATGTGTGACAGTTT	NA	False	NA	-1	True	NA	NA	NA	88775382	88773980	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_88775099_88775283
transcript_32839.known	chr15	-	730	2	FSM	ENSMUSG00000093394.2	ENSMUST00000177166.2	730	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAACAG	NA	False	NA	NA	False	NA	NA	NA	88775728	88774710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_88775099_88775386
transcript_32840.known	chr15	-	485	2	FSM	ENSMUSG00000093394.2	ENSMUST00000176338.2	485	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88775686	88774715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_88775099_88775584
transcript_32841.nnic	chr15	-	499	2	NNC	ENSMUSG00000093394.2	novel	1234	2	NA	NA	304	12	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	0	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACAGAGGAGAGACCCT	NA	False	NA	NA	False	NA	NA	NA	88775382	88774698	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_88775099_88775283
transcript_32846.nic	chr15	+	2044	12	ISM	ENSMUSG00000015365.16	ENSMUST00000146993.8	4133	27	-26	49213	-26	10864	5prime_fragment	FALSE	canonical	3	47	junction_4	7.60382678775509	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAGAACTACTCGTAAGCC	2881	False	NA	NA	False	AAAAAG	-18	NA	88867085	88890138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_+_88867265_88869717_88869903_88872589_88872753_88878008_88878122_88879043_88879229_88880258_88880400_88880871_88881099_88881482_88881607_88882970_88883166_88888121_88888237_88889454_88889633_88889899
transcript_32847.nic	chr15	+	2041	11	ISM	ENSMUSG00000015365.16	ENSMUST00000146993.8	4133	27	-26	49483	-26	10594	5prime_fragment	TRUE	canonical	3	47	junction_4	7.62954782408499	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTGACACATGGTAATTT	2881	False	NA	NA	False	AATAAA	-17	NA	88867085	88889868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_+_88867265_88869717_88869903_88872589_88872753_88878008_88878122_88879043_88879229_88880258_88880400_88880871_88881099_88881482_88881607_88882970_88883166_88888121_88888237_88889454
transcript_32848.known	chr15	+	845	5	FSM	ENSMUSG00000015365.16	ENSMUST00000156949.2	845	5	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_4	9.33742469849155	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTTTAAAGAGTTGTAGT	2907	False	NA	NA	False	AATAAA	-17	NA	88867111	88879274	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_88867265_88869717_88869903_88872589_88872753_88878008_88878122_88879043
transcript_32849.known	chr15	+	2439	10	FSM	ENSMUSG00000015363.14	ENSMUST00000081702.12	2439	10	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	6.70175948888899	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCTTTGTGAAGTGTATGG	NA	False	NA	9	True	AATAAA	-19	NA	88960215	88971280	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_88960345_88965182_88965248_88965555_88965635_88966153_88966321_88966853_88966995_88968900_88969012_88969105_88969246_88969476_88969650_88969728_88969841_88969958
transcript_32851.known	chr15	+	2396	10	FSM	ENSMUSG00000015363.14	ENSMUST00000169870.8	2396	10	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_3	29.0546526309673	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCCCGCTTTGTGAAGT	NA	False	NA	3	True	AATAAA	-13	NA	88960274	88971274	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_88960345_88965182_88965248_88965555_88965657_88966153_88966321_88966853_88966995_88968900_88969012_88969105_88969246_88969476_88969650_88969728_88969841_88969958
transcript_32854.known	chr15	+	1422	10	FSM	ENSMUSG00000015363.14	ENSMUST00000169891.8	1422	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	30.2985148150862	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCCCAGGCTTCCCAGCA	NA	False	NA	NA	False	AATAAA	-16	NA	88960296	88970333	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_88960345_88965182_88965248_88965555_88965635_88966153_88966321_88966853_88966995_88968900_88969012_88969105_88969246_88969476_88969661_88969728_88969841_88969958
transcript_32858.known	chr15	-	2376	20	FSM	ENSMUSG00000062906.13	ENSMUST00000129398.8	2376	20	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_12	9.07555237820426	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATCTCTGTCTCCGTTAC	NA	False	NA	-3	True	AATAAA	-17	NA	89012856	89007509	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_89007683_89007767_89007928_89008021_89008205_89008377_89008457_89008734_89008792_89008915_89009008_89009514_89009600_89009699_89009953_89010028_89010094_89010177_89010285_89010414_89010505_89010580_89010641_89010832_89010910_89011071_89011199_89011352_89011422_89011588_89011694_89011796_89011895_89012124_89012222_89012387_89012523_89012592
transcript_32864.known	chr15	-	1808	12	FSM	ENSMUSG00000022610.11	ENSMUST00000088827.8	1808	12	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_5	1.87634249459548	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGTTGTGTGGCCCCAT	NA	False	NA	NA	False	AATAAA	-20	NA	89024824	89014786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_89015422_89016697_89016872_89016955_89017035_89017103_89017184_89017281_89017354_89018814_89018930_89019325_89019374_89019629_89019660_89019779_89019892_89021603_89021663_89024330_89024461_89024550
transcript_32867.known	chr15	-	1928	11	FSM	ENSMUSG00000022610.11	ENSMUST00000230266.2	1928	11	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_5	1.79164728671689	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGGTTGTGTGGCCCCA	NA	False	NA	NA	False	AATAAA	-19	NA	89024855	89014787	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_89015422_89016697_89016872_89016955_89017035_89017103_89017184_89017281_89017354_89018814_89018930_89019325_89019374_89019629_89019660_89019779_89019892_89021603_89021663_89024330
transcript_32868.known	chr15	-	2461	12	FSM	ENSMUSG00000053137.8	ENSMUST00000088823.5	2461	12	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_8	5.74096487412616	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAGGCTCTGGATCCCAT	NA	False	NA	-13	True	AATAAA	-28	NA	89033831	89026689	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_89028021_89028343_89028518_89028595_89028675_89029298_89029379_89029577_89029650_89030004_89030120_89030205_89030254_89030341_89030372_89030474_89030587_89030673_89030733_89030911_89031042_89033600
transcript_32874.known	chr15	-	4585	20	FSM	ENSMUSG00000015377.11	ENSMUST00000078953.9	4585	20	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_9	20.4859251730037	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGTCTTTTAATATTTT	NA	False	NA	1	True	ATTAAA	-22	NA	89080651	89066415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_89069313_89069394_89069470_89069564_89069668_89069740_89069851_89070196_89070251_89070374_89070465_89070565_89070631_89070956_89071023_89071158_89071254_89071350_89071447_89071534_89071658_89072355_89072412_89072661_89072725_89072813_89072894_89072976_89073083_89073639_89073721_89074443_89074557_89075076_89075120_89075192_89075232_89080421
transcript_32875.nic	chr15	-	2293	20	NIC	ENSMUSG00000015377.11	novel	4585	20	NA	NA	-9	0	intron_retention	FALSE	canonical	3	17	junction_19	26.5207805419452	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGTCCCTGACTATTGG	NA	False	NA	1	True	AGTAAA	-19	NA	89080677	89069014	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_89069313_89069394_89069470_89069564_89069668_89069740_89069851_89070196_89070251_89070374_89070465_89070565_89070631_89070956_89071023_89071158_89071447_89071534_89071658_89072355_89072412_89072661_89072725_89072813_89072894_89072976_89073083_89073639_89073721_89074443_89074557_89075076_89075120_89075192_89075232_89077137_89077322_89080421
transcript_32878.nic	chr15	-	2109	19	NIC	ENSMUSG00000015377.11	novel	4585	20	NA	NA	-9	0	intron_retention	FALSE	canonical	3	70	junction_7	13.724358808023	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGTCCCTGACTATTGG	NA	False	NA	1	True	AGTAAA	-19	NA	89080677	89069014	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_89069313_89069394_89069470_89069564_89069668_89069740_89069851_89070196_89070251_89070374_89070465_89070565_89070631_89070956_89071023_89071158_89071447_89071534_89071658_89072355_89072412_89072661_89072725_89072813_89072894_89072976_89073083_89073639_89073721_89074443_89074557_89075076_89075120_89075192_89075232_89080421
transcript_32889.known	chr15	-	2677	18	FSM	ENSMUSG00000015377.11	ENSMUST00000229755.2	2677	18	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_17	28.0313714517704	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACAGTCTGGTCCCTGACT	NA	False	NA	-4	True	AGTAAA	-14	NA	89080647	89069019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_89069313_89069394_89069470_89069564_89070251_89070374_89070465_89070565_89070631_89070956_89071023_89071158_89071447_89071534_89071658_89072355_89072412_89072661_89072725_89072813_89072894_89072976_89073083_89073639_89073721_89074443_89074557_89075076_89075120_89075192_89075232_89077137_89077322_89080421
transcript_32892.known	chr15	+	1298	3	FSM	ENSMUSG00000054136.7	ENSMUST00000066991.7	1298	3	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	15	1224	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGGCCACTCTCTTGTG	NA	False	NA	NA	False	ATTAAA	-19	NA	89206922	89208934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_89207337_89207479_89207604_89208174
transcript_32894.known	chr15	-	2906	14	FSM	ENSMUSG00000022614.9	ENSMUST00000023283.6	2906	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_12	66.7675469479281	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGCTGCGGTGTGGCGAG	NA	False	NA	NA	False	AATAAA	-19	NA	89239862	89235206	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285_89238501_89238629_89238659_89238766_89239021_89239558
transcript_3290.nic	chr1	-	1389	10	ISM	ENSMUSG00000026301.17	ENSMUST00000189690.7	2060	12	-42	5520	-42	-5029	5prime_fragment	FALSE	canonical	3	59	junction_6	13.200261875442	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTATGAAATAATATTATGG	NA	False	NA	NA	False	NA	NA	NA	90017908	89975376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_89975689_89980109_89980197_89994446_89994647_89998233_89998342_90001468_90001552_90005528_90005597_90008581_90008675_90009037_90009145_90017196_90017273_90017653
transcript_32900.known	chr15	-	2815	13	FSM	ENSMUSG00000022614.9	ENSMUST00000230112.2	2815	13	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_11	68.2647521704202	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATACCCATTTACTAGTGG	NA	False	NA	-12	True	AATAAA	-12	NA	89239836	89235350	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285_89238501_89238658_89239021_89239558
transcript_32904.known	chr15	+	3255	20	FSM	ENSMUSG00000008690.16	ENSMUST00000145259.8	3255	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	269.960005245468	489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGTTGATCCTCTGGCT	NA	False	NA	6	True	AATAAA	-16	NA	89239965	89257029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_89240130_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254512_89254597_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
transcript_32905.known	chr15	+	3223	20	FSM	ENSMUSG00000008690.16	ENSMUST00000036987.12	3223	20	0	0	0	0	multi-exon	TRUE	canonical	1	145	junction_1	244.22211859964	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGTTGATCCTCTGGCT	NA	False	NA	6	True	AATAAA	-16	NA	89239921	89257029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_89240054_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254512_89254597_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
transcript_32922.nic	chr15	-	1383	4	ISM	ENSMUSG00000022615.8	ENSMUST00000023285.5	2037	11	2875	-294	2875	294	3prime_fragment	FALSE	canonical	3	35	junction_3	10.6770782520313	160	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGCATGTGCTCTGTAC	NA	False	NA	-7	True	ATTAAA	-14	NA	89258367	89255839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_89256669_89257625_89257806_89257885_89258027_89258134
transcript_32923.known	chr15	-	1145	3	FSM	ENSMUSG00000091780.4	ENSMUST00000167643.4	1145	3	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_2	1.5	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGCATGTGCTCTGTAC	NA	False	NA	-7	True	ATTAAA	-14	NA	89258021	89255839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_89256669_89257625_89257806_89257885
transcript_32925.known	chr15	-	1250	2	FSM	ENSMUSG00000091780.4	ENSMUST00000228977.2	1250	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATCTGTGCATGTGCTCTG	NA	False	NA	-10	True	ATTAAA	-11	NA	89258049	89255842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_89256669_89257625
transcript_32927.known	chr15	-	1076	1	FSM	ENSMUSG00000047394.10	ENSMUST00000227854.2	1076	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGCTGATCACAAGGAACA	NA	False	NA	NA	False	NA	NA	NA	89263206	89262130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_89262100_89263200
transcript_32928.known	chr15	-	448	3	FSM	ENSMUSG00000078938.10	ENSMUST00000109314.9	448	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACCAAAGGACCCCTTTC	NA	False	NA	NA	False	AATAAA	-13	NA	89294466	89274376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_89274643_89281528_89281638_89294393
transcript_32930.known	chr15	-	2895	19	FSM	ENSMUSG00000078937.9	ENSMUST00000109313.9	2895	19	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_15	11.4655953418569	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCTCCATGGGACTAC	5216	False	NA	NA	False	AATAAA	-19	NA	89310066	89300607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_89301183_89301347_89301441_89302034_89302149_89302934_89303088_89303178_89303314_89303393_89303559_89304094_89304212_89304290_89304397_89304894_89305081_89305547_89305744_89306327_89306413_89306491_89306600_89307694_89307773_89307858_89307997_89308142_89308245_89308467_89308646_89308919_89309060_89309390_89309551_89310000
transcript_32933.nic	chr15	-	1715	11	NIC	ENSMUSG00000022617.16	novel	1707	11	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_3	114.705056558113	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGACTTAAGTGACATTC	1151	False	NA	NA	False	AATAAA	-30	NA	89314131	89310562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_89310865_89311013_89311096_89311526_89311603_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89312748_89312916_89313031_89313251_89313361_89313579
transcript_32939.known	chr15	-	1707	11	FSM	ENSMUSG00000022617.16	ENSMUST00000023289.13	1707	11	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_8	79.2225346729073	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAATACAGACTTAAGT	1180	False	NA	NA	False	AATAAA	-23	NA	89314102	89310569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89312748_89312916_89313031_89313251_89313361_89313579
transcript_32942.nic	chr15	-	1777	11	NIC	ENSMUSG00000022617.16	novel	1707	11	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_8	112.30422966211	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGACTTAAGTGACATTC	1151	False	NA	NA	False	AATAAA	-30	NA	89314131	89310562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89312782_89312916_89313031_89313251_89313361_89313579
transcript_32947.nic	chr15	-	1884	10	NIC	ENSMUSG00000022617.16	novel	1707	11	NA	NA	-20	0	intron_retention	FALSE	canonical	3	62	junction_3	105.224627451097	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGACTTAAGTGACATTC	1151	False	NA	NA	False	AATAAA	-30	NA	89314131	89310562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_89310865_89311013_89311096_89311526_89311603_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89313031_89313251_89313361_89313579
transcript_32950.known	chr15	-	1416	10	FSM	ENSMUSG00000022617.16	ENSMUST00000171140.8	1416	10	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_9	49.0736408087093	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAATACAGACTTAAGT	1640	False	NA	NA	False	AATAAA	-23	NA	89313642	89310569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89313031_89313251_89313361_89313579
transcript_3296.known	chr1	+	3065	2	FSM	ENSMUSG00000044337.6	ENSMUST00000065587.5	3065	2	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	0	157	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTACATCCTTTGATGTT	NA	False	NA	NA	False	NA	NA	NA	90131701	90144473	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_90131810_90141516
transcript_32965.known	chr15	-	839	9	FSM	ENSMUSG00000022617.16	ENSMUST00000166267.2	839	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	118.85804295461	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCTCCGAAGAGGAACAGAA	1649	False	NA	NA	False	NA	NA	NA	89313633	89311582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89312782_89312916_89313031_89313251_89313361_89313579
transcript_32966.known	chr15	+	5558	12	FSM	ENSMUSG00000022619.6	ENSMUST00000023291.6	5558	12	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	12.5005784990103	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTGTTGCTTATCTCAGT	1258	False	NA	11	True	AATAAA	-18	NA	89338115	89348671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_89338489_89339386_89339493_89340727_89341007_89341122_89341220_89341337_89342574_89342944_89343021_89343118_89343292_89343384_89343495_89344578_89344687_89344854_89344926_89345562_89345662_89345841
transcript_32968.known	chr15	-	3492	9	FSM	ENSMUSG00000022620.15	ENSMUST00000165199.8	3492	9	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_8	23.5358768691545	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTTTTAGAAGCATCTAT	NA	False	NA	NA	False	NA	NA	NA	89361628	89356678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_89357761_89357871_89357975_89358209_89358338_89358430_89358556_89358742_89358913_89358989_89359209_89359324_89359566_89359710_89360859_89361352
transcript_3297.nnic	chr1	+	798	4	NNC	ENSMUSG00000101028.2	novel	1001	2	NA	NA	-4652	1791	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAGGACAAAATACACATCC	NA	False	NA	NA	False	AATAAA	-18	NA	90203527	90213425	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_90203693_90210782_90210861_90211405_90211578_90213042
transcript_32970.known	chr15	-	2699	7	FSM	ENSMUSG00000022620.15	ENSMUST00000023292.9	2699	7	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_6	9.42809041582063	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAATAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	89360316	89356730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_89357761_89357871_89357975_89358209_89358338_89358430_89358556_89358742_89359209_89359324_89359566_89359710
transcript_32978.known	chr15	-	1640	9	FSM	ENSMUSG00000022621.17	ENSMUST00000023294.15	1640	9	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_3	5.95818764390649	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTAAGGGTCTCAGTTACC	-11	True	NA	-4	True	AATAAA	-17	NA	89476126	89466735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_89467634_89467801_89467886_89468112_89468211_89468481_89468594_89470461_89470542_89471116_89471197_89472390_89472421_89474475_89474630_89476022
transcript_32989.known	chr15	-	1322	6	FSM	ENSMUSG00000022621.17	ENSMUST00000094056.12	1322	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	23.9949994790581	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACACTAAGGGTCTCAGT	1377	False	NA	-8	True	AATAAA	-13	NA	89476067	89466739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_89467634_89467801_89467886_89468112_89468211_89468546_89468594_89474475_89474630_89476022
transcript_32991.known	chr15	-	536	3	FSM	ENSMUSG00000022621.17	ENSMUST00000171142.2	536	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCTTAGAGCTGAAAACGT	1365	False	NA	NA	False	NA	NA	NA	89476079	89472095	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_89472421_89474475_89474630_89476022
transcript_32992.known	chr15	-	3366	20	FSM	ENSMUSG00000052560.16	ENSMUST00000064391.12	3366	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	2.20676371507754	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCTTGCCTTATGTGTAT	NA	False	NA	NA	False	ATTAAA	-13	NA	90563635	90371685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_90373379_90381267_90381342_90384087_90384146_90385613_90385717_90393697_90393826_90400110_90400293_90406110_90406158_90424434_90424497_90425459_90425514_90436176_90436253_90452451_90452494_90453662_90453768_90456147_90456252_90469080_90469145_90486015_90486093_90499313_90499354_90503834_90503939_90532780_90532828_90533445_90533487_90563370
transcript_32993.known	chr15	-	3229	19	FSM	ENSMUSG00000052560.16	ENSMUST00000088649.11	3229	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	2.17235719955746	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTTGCCTTATGTGTATT	NA	False	NA	NA	False	ATTAAA	-14	NA	90563574	90371684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_90373379_90381267_90381342_90384087_90384146_90385613_90385717_90393697_90393826_90400110_90400293_90406110_90406158_90424434_90424497_90425459_90425514_90436176_90436253_90452451_90452494_90453662_90453768_90456147_90456252_90469080_90469145_90499313_90499354_90503834_90503939_90532780_90532828_90533445_90533487_90563370
transcript_32999.known	chr15	-	697	4	FSM	ENSMUSG00000052560.16	ENSMUST00000014777.9	697	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	0.816496580927726	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGATTCTGGTTGTTGTGT	NA	False	NA	NA	False	NA	NA	NA	90563591	90527528	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_90527917_90532780_90532828_90533445_90533487_90563370
transcript_33.known	ERCC-00073	+	587	1	FSM	ERCC-00073A	DQ668358	587	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00073_+_0_600
transcript_33001.nnic	chr15	-	399	2	Genic_Genomic	ENSMUSG00000067870.6	novel	378	1	NA	NA	-90	59	multi-exon	FALSE	canonical	0	0	junction_1	0	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGAACTATGGCAAGGGAA	NA	False	NA	NA	False	AATAAA	-41	NA	90648949	90648422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr15_-_90648627_90648754
transcript_33002.nnic	chr15	-	402	2	Genic_Genomic	ENSMUSG00000067870.6	novel	378	1	NA	NA	-24	50	multi-exon	FALSE	canonical	0	0	junction_1	0	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATTGGAACTATG	NA	False	NA	NA	False	AATAAA	-32	NA	90648883	90648431	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr15_-_90648627_90648676
transcript_33004.nnic	chr15	+	404	2	Antisense	novelGene_ENSMUSG00000067870.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGCGCGAGGGTTTGTGGG	NA	False	NA	NA	False	NA	NA	NA	90648433	90648884	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr15_+_90648508_90648554
transcript_33006.known	chr15	-	378	1	FSM	ENSMUSG00000067870.6	ENSMUST00000181935.2	378	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	265375	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGCTCGTGTCAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	90648859	90648481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_90648500_90648900
transcript_33008.known	chr15	+	2041	13	FSM	ENSMUSG00000078932.9	ENSMUST00000190436.7	2041	13	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_9	6.39172642301489	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTCCAACTAGGAAGCAG	NA	False	NA	NA	False	NA	NA	NA	91083696	91145097	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_91083802_91115782_91115823_91119943_91120083_91123134_91123268_91123620_91123670_91124845_91125023_91126772_91126889_91129815_91130334_91131061_91131132_91132717_91132779_91137065_91137130_91141563_91141647_91144611
transcript_3301.known	chr1	+	2287	8	FSM	ENSMUSG00000034432.12	ENSMUST00000036153.12	2287	8	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_7	24.8185250100297	1800	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTAGTGGGTTACCTAA	NA	False	NA	21	True	ATTAAA	-22	NA	90530702	90541063	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_90531350_90532096_90532168_90533185_90533235_90534258_90534392_90537814_90537923_90538696_90538760_90539261_90539310_90539895
transcript_33017.known	chr15	+	594	2	FSM	ENSMUSG00000109770.2	ENSMUST00000209694.2	594	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGTAATTTCCCGCCCCCC	NA	False	NA	NA	False	NA	NA	NA	92899704	92900518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_92899833_92900052
transcript_33019.known	chr15	-	1870	5	FSM	ENSMUSG00000022634.10	ENSMUST00000133736.2	1870	5	0	0	0	0	multi-exon	TRUE	canonical	3	44	junction_2	48.2875501552937	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTTTGCATTTTGTTTA	NA	False	NA	-4	True	AATAAA	-17	NA	93234816	93182161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_93183504_93184290_93184444_93215419_93215490_93234220_93234347_93234637
transcript_33022.known	chr15	-	1676	4	FSM	ENSMUSG00000022634.10	ENSMUST00000080299.7	1676	4	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_3	11.0453610171873	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGCATTTTGTTTACAA	NA	False	NA	-1	True	AATAAA	-20	NA	93234689	93182158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_93183504_93184290_93184444_93234220_93234347_93234637
transcript_33031.known	chr15	-	877	8	FSM	ENSMUSG00000022635.10	ENSMUST00000076070.9	877	8	0	0	0	0	multi-exon	FALSE	canonical	3	583	junction_1	44.8289265214016	3101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTGGAATAGTGACTGGT	NA	False	NA	-7	True	AATAAA	-21	NA	93296215	93283986	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_93284168_93285457_93285534_93285627_93285741_93288931_93289040_93289334_93289447_93293467_93293497_93295050_93295137_93296043
transcript_33032.known	chr15	-	624	7	FSM	ENSMUSG00000022635.10	ENSMUST00000161409.2	624	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	316.508908071935	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAGAAAGAGAAGAAGA	NA	False	NA	NA	False	AAAACA	-23	NA	93296215	93285681	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_93285741_93288931_93289040_93289334_93289447_93291587_93291646_93293467_93293497_93295050_93295137_93296043
transcript_33034.nic	chr15	+	1370	9	NIC	ENSMUSG00000036167.17	novel	3573	10	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_3	46.1078897803836	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTTAAAGTATCTTAATTA	NA	False	NA	NA	False	AATAAA	-11	NA	93296221	93387189	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_+_93296343_93308572_93308665_93318164_93318372_93321894_93321957_93339381_93339594_93353331_93353412_93357552_93357673_93362985_93363127_93386854
transcript_33035.known	chr15	+	3351	9	FSM	ENSMUSG00000036167.17	ENSMUST00000068457.15	3351	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	61.4527257328754	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAATGTTCACT	NA	False	NA	NA	False	TATAAA	-21	NA	93296280	93389379	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_93296343_93308572_93308665_93321894_93321957_93339381_93339594_93349997_93350055_93353331_93353412_93357552_93357673_93362985_93363127_93386854
transcript_33037.nnic	chr15	+	1250	8	NIC	ENSMUSG00000036167.17	novel	3573	10	NA	NA	-9	0	combination_of_known_splicesites	FALSE	canonical	3	55	junction_3	53.2326430464831	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTTAAAGTATCTTAATTA	NA	False	NA	NA	False	AATAAA	-11	NA	93296221	93387189	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_+_93296343_93308572_93308665_93318164_93318372_93321894_93321957_93339381_93339594_93353331_93353412_93362985_93363127_93386854
transcript_33039.known	chr15	+	1154	8	FSM	ENSMUSG00000036167.17	ENSMUST00000109256.11	1154	8	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_5	28.6199587843226	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTTAAAGTATCTTAATTA	NA	False	NA	NA	False	AATAAA	-11	NA	93296230	93387189	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_93296343_93308572_93308665_93321894_93321957_93339381_93339594_93353331_93353412_93357552_93357673_93362985_93363127_93386854
transcript_33041.nnic	chr15	+	1043	7	NIC	ENSMUSG00000036167.17	novel	1154	8	NA	NA	-9	0	combination_of_known_splicesites	FALSE	canonical	3	68	junction_5	39.6722685120083	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTTAAAGTATCTTAATTA	NA	False	NA	NA	False	AATAAA	-11	NA	93296221	93387189	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_+_93296343_93308572_93308665_93321894_93321957_93339381_93339594_93353331_93353412_93362985_93363127_93386854
transcript_33048.known	chr15	+	3573	10	FSM	ENSMUSG00000036167.17	ENSMUST00000049122.16	3573	10	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	61.5210492934966	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTCACTTGGTAGAAACAT	NA	False	NA	NA	False	TATAAA	-33	NA	93296277	93389391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_93296343_93308572_93308665_93318164_93318372_93321894_93321957_93339381_93339594_93349997_93350055_93353331_93353412_93357552_93357673_93362985_93363127_93386854
transcript_33050.known	chr15	-	2840	9	FSM	ENSMUSG00000033356.4	ENSMUST00000049151.4	2840	9	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_8	4.64858849544676	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGAATTGTCTCTATGTTTT	NA	False	NA	-3	True	AATAAA	-27	NA	94441428	94420568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_94421533_94423671_94423726_94425677_94425956_94427336_94427419_94429454_94429554_94431364_94431558_94434394_94434555_94437933_94438856_94441340
transcript_33052.known	chr15	+	2831	12	FSM	ENSMUSG00000059883.17	ENSMUST00000074936.10	2831	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_11	11.4357710498301	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	94441523	94466187	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_94441708_94445716_94445885_94449683_94449830_94451715_94451899_94452566_94452728_94454507_94454573_94456130_94456246_94456649_94456760_94459326_94459511_94460898_94460962_94464619_94464779_94464894
transcript_33054.nnic	chr15	+	1560	10	NNC	ENSMUSG00000059883.17	novel	2831	12	NA	NA	-27	5180	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	9.63788819653397	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCTTTGTCTTGGTTCCTT	NA	False	NA	NA	False	NA	NA	NA	94441496	94460014	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_94441708_94445716_94445885_94449683_94449830_94451715_94451899_94452566_94452728_94454507_94454573_94456130_94456246_94456649_94456760_94459326_94459511_94459797
transcript_33057.known	chr15	-	3025	9	FSM	ENSMUSG00000022451.13	ENSMUST00000023087.13	3025	9	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_8	20.6333316505115	458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTGTGTATGTTGGCTT	NA	False	NA	-12	True	AATAAA	-12	NA	94487760	94475831	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_94477872_94478824_94478947_94479097_94479249_94480630_94480757_94482261_94482367_94483328_94483425_94484238_94484418_94486108_94486187_94487632
transcript_3306.known	chr1	+	508	7	FSM	ENSMUSG00000034432.12	ENSMUST00000186750.2	508	7	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	273.658800130544	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTTCCGCCAATCCCCA	NA	False	NA	NA	False	NA	NA	NA	90531249	90539902	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_90531350_90533185_90533235_90534258_90534392_90537814_90537923_90538696_90538760_90539261_90539310_90539895
transcript_33067.nic	chr15	-	1294	8	ISM	ENSMUSG00000022451.13	ENSMUST00000023087.13	3025	9	-64	2748	-54	321	5prime_fragment	FALSE	canonical	3	499	junction_7	22.0565136845869	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGATTATCACTAGTGCT	NA	False	NA	NA	False	AATAAA	-22	NA	94487824	94478579	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_94478947_94479097_94479249_94480630_94480757_94482261_94482367_94483328_94483425_94484238_94484418_94486108_94486187_94487632
transcript_33068.nnic	chr15	+	1145	7	NNC	ENSMUSG00000059883.17	novel	2831	12	NA	NA	10053	5180	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_6	8.1325819325039	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCTTTGTCTTGGTTCCTT	NA	False	NA	NA	False	NA	NA	NA	94451605	94460014	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_94451899_94452566_94452728_94454507_94454573_94456130_94456246_94456649_94456760_94459326_94459511_94459797
transcript_33073.nic	chr15	-	578	4	ISM	ENSMUSG00000022451.13	ENSMUST00000023087.13	3025	9	-11	7411	-1	-919	5prime_fragment	FALSE	canonical	3	499	junction_3	27.3536509852382	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGGCGTGGTGAGCCAAA	NA	False	NA	NA	False	AATAAA	-15	NA	94487771	94483242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_94483425_94484238_94484418_94486108_94486187_94487632
transcript_33080.nnic	chr15	+	626	4	NNC	ENSMUSG00000063296.6	novel	2717	8	NA	NA	-6	20	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_3	46.5044800709208	16	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAACCCCACAGCAACAG	NA	False	NA	NA	False	TTTAAA	-33	NA	94527124	94615050	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_94527184_94535941_94536245_94612742_94612876_94614919
transcript_33082.nnic	chr15	-	999	3	NNC	ENSMUSG00000045608.8	novel	477	3	NA	NA	-59	433	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	4.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCAACGAGCAAATATTCAT	NA	False	NA	54	True	AGTAAA	-11	NA	95530768	95522185	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_95522899_95530158_95530347_95530670
transcript_33083.known	chr15	-	477	3	FSM	ENSMUSG00000045608.8	ENSMUST00000229611.2	477	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	14.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGAAGGGACCTAGAGAC	NA	False	NA	NA	False	NA	NA	NA	95530709	95522618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_95522899_95530158_95530347_95530700
transcript_33085.nnic	chr15	-	933	3	NNC	ENSMUSG00000045608.8	novel	477	3	NA	NA	-59	367	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	4.5	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTTCTCTCCAAGTTTTA	NA	False	NA	-12	True	ATTAAA	-15	NA	95530768	95522251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_95522899_95530158_95530347_95530670
transcript_33087.nnic	chr15	-	863	3	NNC	ENSMUSG00000045608.8	novel	477	3	NA	NA	-59	367	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	17.5	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTTCTCTCCAAGTTTTA	NA	False	NA	-12	True	ATTAAA	-15	NA	95530768	95522251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_95522899_95530158_95530347_95530740
transcript_33090.known	chr15	+	4927	20	FSM	ENSMUSG00000064210.8	ENSMUST00000071874.8	4927	20	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_10	12.2043995518441	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95688723	95872632	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_95688938_95762105_95762189_95792293_95792423_95810185_95810252_95811252_95811538_95811752_95811867_95813833_95813950_95818124_95818260_95825404_95825511_95829663_95829725_95839090_95839234_95841278_95841357_95846152_95846379_95847371_95847542_95847739_95847838_95853771_95853903_95859956_95860163_95863701_95863905_95865503_95865610_95870375
transcript_33091.known	chr15	+	647	4	FSM	ENSMUSG00000064210.8	ENSMUST00000226932.2	647	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	30.6521704868604	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACAAGTGTAGGACCTC	NA	False	NA	NA	False	NA	NA	NA	95688890	95792747	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_95688938_95728524_95728588_95762105_95762189_95792293
transcript_33093.known	chr15	+	480	2	FSM	ENSMUSG00000064210.8	ENSMUST00000226682.2	480	2	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGGGGAAATGTTCTGCA	NA	False	NA	NA	False	NA	NA	NA	95688776	95728843	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_95688938_95728524
transcript_33094.nnic	chr15	-	580	2	NNC	ENSMUSG00000097643.2	novel	2618	2	NA	NA	900	7	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0	19	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATATGTCTGTGTGCCAT	NA	False	NA	NA	False	ATTAAA	-28	NA	95688623	95685729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_95686186_95688499
transcript_33095.known	chr15	-	733	2	FSM	ENSMUSG00000078648.4	ENSMUST00000168960.3	733	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTTGTTCCTCAATAATA	NA	False	NA	NA	False	AATAAA	-20	NA	95727953	95722338	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_95722925_95727806
transcript_33106.known	chr15	-	4519	5	FSM	ENSMUSG00000033228.9	ENSMUST00000228072.2	4519	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	104.145331148352	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTGGTGACTGTATAGTA	NA	False	NA	-2	True	NA	NA	NA	96316573	96309579	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_96312798_96312912_96313033_96313609_96313829_96314729_96315071_96315952
transcript_33107.known	chr15	-	5766	15	FSM	ENSMUSG00000033228.9	ENSMUST00000047835.8	5766	15	0	0	0	0	multi-exon	TRUE	canonical	3	72	junction_2	59.5770809240313	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGTGTTAATTTGTTG	NA	False	NA	-20	True	NA	NA	NA	96358724	96311536	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_96312798_96312912_96313033_96313657_96313829_96314729_96315071_96315952_96318728_96319826_96319934_96321397_96321500_96322450_96322558_96322709_96322766_96329661_96329727_96330204_96330306_96332800_96332879_96341825_96341984_96344390_96344473_96358482
transcript_33110.known	chr15	+	632	2	FSM	ENSMUSG00000116160.2	ENSMUST00000229356.2	632	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAACGGAGACAGAGCCG	NA	False	NA	NA	False	NA	NA	NA	96395782	96396769	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_96395869_96396223
transcript_33113.known	chr15	-	3183	16	FSM	ENSMUSG00000023169.16	ENSMUST00000100262.4	3183	16	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_15	98.2259074220691	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAATGGTTTGTTTCCCTC	NA	False	NA	-3	True	ATTAAA	-24	NA	96539843	96473867	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96538934
transcript_33114.known	chr15	-	6966	16	FSM	ENSMUSG00000023169.16	ENSMUST00000088454.13	6966	16	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_15	70.2442089348929	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCGAGTCTCGTATGATT	NA	False	NA	-17	True	ATTAAA	-16	NA	96540131	96469298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96540008
transcript_33115.known	chr15	-	7266	16	FSM	ENSMUSG00000023169.16	ENSMUST00000088452.11	7266	16	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_15	89.8033901859439	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCGAGTCTCGTATGATT	NA	False	NA	-17	True	ATTAAA	-16	NA	96540794	96469298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96540371
transcript_33128.known	chr15	-	4831	12	FSM	ENSMUSG00000023169.16	ENSMUST00000230756.2	4831	12	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_11	76.247314002278	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTGTAGCAGCATCGTTC	NA	False	NA	NA	False	NA	NA	NA	96540093	96478567	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96540008
transcript_3313.known	chr1	+	2593	7	FSM	ENSMUSG00000034432.12	ENSMUST00000191510.7	2593	7	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_6	25.9293913027925	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTGGCTCTAGAAATTT	NA	False	NA	25	True	AATAAA	-30	NA	90531197	90540846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_90531350_90532096_90533235_90534258_90534392_90537814_90537923_90538696_90538760_90539261_90539310_90539895
transcript_33133.nic	chr15	-	1322	8	ISM	ENSMUSG00000023169.16	ENSMUST00000230756.2	4831	12	-197	7939	-10	-7939	5prime_fragment	FALSE	canonical	3	214	junction_7	91.5153605931255	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGCGTTGTCTTCTGTTTT	NA	False	NA	NA	False	AAGAAA	-29	NA	96540290	96486506	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96540008
transcript_33138.nnic	chr15	-	700	3	NNC	ENSMUSG00000023169.16	novel	6966	16	NA	NA	-10	-258	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	107	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTTCATAAATAATTTGCC	NA	False	NA	NA	False	NA	NA	NA	96540290	96474125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_96474330_96521836_96522051_96540008
transcript_3314.known	chr1	-	1831	6	FSM	ENSMUSG00000026304.14	ENSMUST00000027529.12	1831	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1.2	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTCATGAGGTTATATTT	NA	False	NA	NA	False	ATTAAA	-18	NA	90897383	90885854	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_90886722_90886889_90886984_90887723_90887850_90888832_90888985_90891865_90892026_90896951
transcript_33140.known	chr15	-	3722	1	FSM	ENSMUSG00000023169.16	ENSMUST00000229253.2	3722	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAGCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATGAA	-4	NA	96540280	96536558	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_96536600_96540300
transcript_33141.known	chr15	-	4660	16	FSM	ENSMUSG00000022462.8	ENSMUST00000023099.8	4660	16	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_15	32.8196418153655	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCAGTAGGATTTTTTGT	NA	False	NA	-8	True	AATAAA	-16	NA	96597611	96585272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_96588110_96588989_96589088_96589177_96589323_96589559_96589685_96590194_96590296_96590398_96590479_96590897_96591057_96591161_96591221_96591436_96591520_96592893_96592976_96593096_96593190_96593316_96593391_96595802_96595919_96596062_96596145_96596495_96596699_96597288
transcript_33143.nic	chr15	-	835	4	ISM	ENSMUSG00000022462.8	ENSMUST00000023099.8	4660	16	-31	10450	-31	-8177	5prime_fragment	FALSE	canonical	3	252	junction_3	28.8020061029706	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAGCAACTTGCGGT	NA	False	NA	NA	False	GATAAA	-31	NA	96597642	96595722	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_96595919_96596062_96596145_96596495_96596699_96597288
transcript_33144.nic	chr15	-	983	3	NIC	ENSMUSG00000022462.8	novel	4660	16	NA	NA	-31	-8173	intron_retention	FALSE	canonical	3	252	junction_2	29.5	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCAACTTGCGGTTCAA	NA	False	NA	NA	False	GATAAA	-35	NA	96597642	96595718	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_96596145_96596495_96596699_96597288
transcript_33147.known	chr15	-	6116	10	FSM	ENSMUSG00000022462.8	ENSMUST00000229141.2	6116	10	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_2	23.0506688261606	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAATACTTTAAAAGACC	992	False	NA	-105	True	AATACA	-16	NA	96596572	96587545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_96588110_96588989_96589088_96589177_96589323_96589559_96589685_96590194_96590296_96590398_96590479_96590897_96591057_96591161_96591221_96591436_96596145_96596495
transcript_3315.known	chr1	+	2050	13	FSM	ENSMUSG00000026305.16	ENSMUST00000068116.13	2050	13	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	28.0697296428416	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCTGTGTGGGTTTTGTTT	NA	False	NA	NA	False	AATGAA	-9	NA	90926500	91056662	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_90926616_90996284_90996372_91028298_91028335_91028906_91029033_91030968_91031041_91032848_91033020_91035019_91035113_91039877_91040020_91047862_91047913_91050143_91050262_91050799_91050880_91053362_91053468_91055807
transcript_33154.known	chr15	-	3932	16	FSM	ENSMUSG00000022464.15	ENSMUST00000023101.10	3932	16	0	0	0	0	multi-exon	FALSE	canonical	3	1416	junction_8	94.9644143877063	1130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGGCTATGATCTTCTTT	NA	False	NA	-12	True	AATAAA	-16	NA	96953837	96892703	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
transcript_3316.nic	chr1	+	2270	13	NIC	ENSMUSG00000026305.16	novel	2849	23	NA	NA	-51	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_11	25.9117090649511	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGGTTTTGTTTTTTA	NA	False	NA	NA	False	AATGAA	-13	NA	90981114	91056666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_90981446_90996284_90996372_91028298_91028335_91028906_91029033_91030968_91031041_91032848_91033020_91035019_91035113_91039877_91040020_91047862_91047913_91050143_91050262_91050799_91050880_91053362_91053468_91055807
transcript_33164.known	chr15	-	3923	15	FSM	ENSMUSG00000022464.15	ENSMUST00000231039.2	3923	15	0	0	0	0	multi-exon	FALSE	canonical	3	1416	junction_8	96.7698721879145	910	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTATGATCTTCTTTCGT	NA	False	NA	-9	True	AATAAA	-19	NA	96917832	96892700	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604
transcript_33165.known	chr15	-	1963	16	FSM	ENSMUSG00000022464.15	ENSMUST00000230086.2	1963	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	409.635849125646	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGGCCGTGCAGTGCAGT	NA	False	NA	-12	True	ATTAAA	-23	NA	96929092	96894648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96929014
transcript_33168.known	chr15	-	655	3	FSM	ENSMUSG00000116295.2	ENSMUST00000231024.2	655	3	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	244.5	978	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCCTGATCATACCATAGC	NA	False	NA	-10	True	AATAAA	-17	NA	97065125	97058813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_97059277_97064383_97064508_97065057
transcript_33169.known	chr15	-	510	4	FSM	ENSMUSG00000116295.2	ENSMUST00000229999.2	510	4	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_3	214.206027511418	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTCTCCGCTTTCCTCCCG	NA	False	NA	NA	False	NA	NA	NA	97065124	97059069	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_97059277_97059835_97059964_97064383_97064492_97065057
transcript_3317.nic	chr1	+	2133	12	NIC	ENSMUSG00000026305.16	novel	2849	23	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_10	27.2156979494562	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGGTTTTGTTTTTTA	NA	False	NA	NA	False	AATGAA	-13	NA	90981179	91056666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_90981446_90996284_90996372_91028298_91028335_91028906_91029033_91032848_91033020_91035019_91035113_91039877_91040020_91047862_91047913_91050143_91050262_91050799_91050880_91053362_91053468_91055807
transcript_33170.known	chr15	-	593	4	FSM	ENSMUSG00000116295.2	ENSMUST00000229245.2	593	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	294.920328224421	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATATTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97065123	97054909	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_97055131_97059094_97059277_97064383_97064508_97065057
transcript_33172.nnic	chr15	+	2323	2	NNC	ENSMUSG00000044250.9	novel	2185	6	NA	NA	15408	6	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_1	0	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAAAAGTGGTTCTGCCTG	NA	False	NA	20	True	AATAAA	-21	NA	97274505	97283567	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_97275170_97281908
transcript_33173.known	chr15	+	1790	2	FSM	ENSMUSG00000044250.9	ENSMUST00000228521.2	1790	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTTCCAAAAGTGGTTC	NA	False	NA	14	True	AATAAA	-15	NA	97259082	97283561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_97259217_97281905
transcript_33176.known	chr15	-	2271	17	FSM	ENSMUSG00000022466.7	ENSMUST00000023104.7	2271	17	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_16	35.978292066189	636	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGGTCGATATTTCATTT	NA	False	NA	-3	True	AATAAA	-25	NA	97603706	97572977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_97573261_97576266_97576368_97576950_97577049_97578215_97578403_97579499_97579721_97581707_97581807_97581913_97581985_97584322_97584445_97585991_97586120_97589062_97589192_97591094_97591166_97591984_97592107_97594378_97594507_97596796_97596920_97598948_97599093_97601082_97601251_97603630
transcript_33185.known	chr15	-	3985	25	FSM	ENSMUSG00000022475.20	ENSMUST00000079838.14	3985	25	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_21	6.78181801256533	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCCTTGGGAGAACGCC	2263	False	NA	0	True	AATATA	-16	NA	97729375	97690544	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_97691624_97691810_97691947_97693627_97693713_97693978_97694113_97694713_97694833_97695821_97695920_97696104_97696225_97697437_97697526_97697641_97697698_97698575_97698684_97699956_97700007_97700310_97700432_97700563_97700698_97704346_97704549_97705474_97705649_97705845_97706043_97706233_97706415_97706540_97706652_97706847_97706940_97707281_97707408_97707804_97707849_97708733_97708846_97709143_97709235_97709318_97709510_97729239
transcript_33187.known	chr15	+	2536	3	FSM	ENSMUSG00000081534.4	ENSMUST00000117892.2	2536	3	0	0	0	0	multi-exon	TRUE	canonical	3	145	junction_2	1	266	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTTTTTTTTTTCACT	NA	False	NA	17	True	AATAAA	-18	NA	97682235	97690573	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_97682498_97687783_97687952_97688467
transcript_33192.known	chr15	-	4223	24	FSM	ENSMUSG00000022475.20	ENSMUST00000088402.12	4223	24	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_19	5.55841976156414	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTTTTATTTGCTTTAAA	1990	False	NA	-17	True	NA	NA	NA	97729648	97690561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_97691624_97691810_97691947_97693627_97693713_97693978_97694113_97694713_97694833_97695821_97695920_97696104_97696225_97697437_97697526_97697641_97697698_97698575_97698684_97699956_97700007_97700310_97700432_97700563_97700698_97704346_97704549_97705474_97705670_97705845_97706043_97706233_97706415_97706847_97706940_97707281_97707408_97707804_97707921_97708733_97708846_97709143_97709235_97709318_97709510_97729239
transcript_33195.known	chr15	+	1455	8	FSM	ENSMUSG00000052369.9	ENSMUST00000229428.2	1455	8	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	28.3318527024094	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGCACTGTCTCTGACTG	7680	False	NA	10	True	AATAAA	-16	NA	97862109	97868155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_97862217_97862720_97862912_97864127_97864192_97864817_97864978_97865067_97865209_97865957_97866008_97866489_97866544_97867467
transcript_33202.nnic	chr15	+	1443	7	NIC	ENSMUSG00000052369.9	novel	1455	8	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_5	61.4050757945411	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCACTGTCTCTGACTGC	7643	False	NA	11	True	AATAAA	-17	NA	97862072	97868156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_+_97862217_97862720_97862912_97864127_97864192_97864817_97864978_97865067_97865209_97866489_97866544_97867467
transcript_33208.known	chr15	+	1623	8	FSM	ENSMUSG00000052369.9	ENSMUST00000064200.9	1623	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	38.9117263685331	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCACTGTCTCTGACTGC	7681	False	NA	11	True	AATAAA	-17	NA	97862110	97868156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_97862385_97862720_97862912_97864127_97864192_97864817_97864978_97865067_97865209_97865957_97866008_97866489_97866544_97867467
transcript_33209.nnic	chr15	+	1506	3	Antisense	novelGene_ENSMUSG00000022483.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_2	1	17	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGTTCTCTCTGATGT	NA	False	NA	NA	False	AGTAAA	-20	NA	97891049	97895555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr15_+_97891628_97894006_97894135_97894755
transcript_3321.nic	chr1	+	3778	9	NIC	ENSMUSG00000026305.16	novel	3645	8	NA	NA	-51	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_5	16.4088390814219	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCCTACTGGTTGTTCTG	NA	False	NA	4	True	AATAAA	-18	NA	90981114	91045037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_90981446_90996284_90996372_91028298_91028335_91028906_91029033_91030968_91031041_91032848_91033020_91035019_91035113_91039877_91040020_91042317
transcript_33211.nic	chr15	-	1318	3	ISM	ENSMUSG00000022483.18	ENSMUST00000088355.12	4862	53	26986	0	11250	0	3prime_fragment	FALSE	canonical	3	15	junction_2	1	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTGACTTGTGTTTTGT	9383	False	NA	NA	False	ATTAAA	-31	NA	97875552	97873482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_97874068_97874522_97874766_97875062
transcript_33212.known	chr15	+	2879	23	FSM	ENSMUSG00000033065.15	ENSMUST00000051226.8	2879	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	24.5577830991277	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGTGTTTTGGGCGCTCTT	1596	False	NA	1	True	AATAAA	-13	NA	98006346	98030322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_98006493_98010034_98010128_98016062_98016137_98017273_98017352_98018671_98018862_98019077_98019244_98020099_98020145_98020510_98020620_98020732_98020829_98021026_98021120_98021676_98021803_98022906_98022972_98023430_98023495_98024184_98024335_98024733_98024805_98025318_98025407_98025487_98025641_98026059_98026225_98027146_98027209_98027602_98027715_98029299_98029400_98029482_98029589_98029795
transcript_33215.nnic	chr15	+	2334	19	NNC	ENSMUSG00000033065.15	novel	2816	23	NA	NA	12574	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	22.6396898290492	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGGCGCTCTTGTTATT	NA	False	NA	7	True	AATAAA	-19	NA	98018920	98030328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_98018951_98019077_98019244_98020099_98020145_98020510_98020620_98020732_98020829_98021026_98021120_98021676_98021803_98022906_98022972_98023430_98023495_98024184_98024335_98024733_98024805_98025318_98025407_98025487_98025641_98026059_98026225_98027146_98027209_98027602_98027715_98029299_98029400_98029482_98029589_98029795
transcript_33217.known	chr15	-	6575	18	FSM	ENSMUSG00000033075.18	ENSMUST00000044189.16	6575	18	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_17	35.6797559226372	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCCTGGACTCAATACTAT	5968	False	NA	2	True	AATAAA	-36	NA	97991625	97936624	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945154_97946066_97946271_97954709_97954842_97956076_97956233_97956784_97956870_97957796_97957836_97962699_97962755_97964284_97964557_97964638_97964743_97973689_97973862_97974430_97974591_97980123_97980209_97982850_97982982_97984966_97985015_97991163
transcript_3322.known	chr1	+	3645	8	FSM	ENSMUSG00000026305.16	ENSMUST00000097649.10	3645	8	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_4	18.7823190848223	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCCTACTGGTTGTTCTG	NA	False	NA	4	True	AATAAA	-18	NA	90981175	91045037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_90981446_90996284_90996372_91028298_91028335_91028906_91029033_91032848_91033020_91035019_91035113_91039877_91040020_91042317
transcript_33220.nic	chr15	+	1362	12	ISM	ENSMUSG00000033065.15	ENSMUST00000051226.8	2879	23	18	7252	18	3984	5prime_fragment	FALSE	canonical	0	0	junction_1	25.7415636505158	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTGCCTGCAGCGATTTC	1614	False	NA	NA	False	NA	NA	NA	98006364	98023070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_+_98006493_98010034_98010128_98016062_98016137_98017273_98017352_98018671_98018862_98019077_98019244_98020099_98020145_98020510_98020620_98020732_98020829_98021026_98021120_98021676_98021803_98022906
transcript_33229.nnic	chr15	-	867	5	NNC	ENSMUSG00000033075.18	novel	518	2	NA	NA	0	4059	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	84.538083134171	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGAGTCGTGCTATATT	6143	False	NA	NA	False	AATAAA	-20	NA	97991450	97978863	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_97979180_97980123_97980209_97982850_97982982_97984966_97985015_97991163
transcript_33232.nic	chr15	-	1813	4	ISM	ENSMUSG00000033075.18	ENSMUST00000181349.2	2830	9	-199	17877	0	4061	5prime_fragment	FALSE	canonical	3	84	junction_3	56.6450939328965	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAGTCGTGCTATATTTG	6143	False	NA	NA	False	AATAAA	-22	NA	97991450	97978861	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_97980209_97982850_97982982_97984966_97985015_97991163
transcript_33238.known	chr15	-	1270	2	FSM	ENSMUSG00000033075.18	ENSMUST00000180531.2	1270	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGATGAAAAAGGAGTTGG	6407	False	NA	NA	False	NA	NA	NA	97991186	97986437	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_97987685_97991163
transcript_33239.nnic	chr15	-	733	2	NNC	ENSMUSG00000033075.18	novel	2830	9	NA	NA	-17	1691	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGCCTATTGGCAGAACT	6444	False	NA	NA	False	AAAAAG	-9	NA	97991149	97984746	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_97985015_97990684
transcript_3324.known	chr1	+	3851	16	FSM	ENSMUSG00000070732.3	ENSMUST00000094698.2	3851	16	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_2	27.1317771871533	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCACTCCAGTGCTTTCTGT	4264	False	NA	11	True	AATAAA	-17	NA	91072824	91098517	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_91072892_91077804_91077896_91079886_91081383_91081615_91081675_91083106_91083278_91084376_91084561_91084639_91084663_91084785_91084871_91090079_91090195_91090773_91090903_91092635_91092716_91092816_91092888_91094520_91094807_91096414_91096561_91096678_91096819_91097809
transcript_33241.nic	chr15	-	553	2	ISM	ENSMUSG00000033075.18	ENSMUST00000181349.2	2830	9	-199	23764	0	1689	5prime_fragment	FALSE	canonical	3	84	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGAATGCCTATTGGCAGAA	6143	False	NA	NA	False	AAAAAG	-7	NA	97991450	97984748	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_97985015_97991163
transcript_33242.known	chr15	-	1049	4	FSM	ENSMUSG00000048175.14	ENSMUST00000059112.12	1049	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_3	39.6848697728604	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGCTGTGTGGTTTAT	NA	False	NA	NA	False	NA	NA	NA	98043540	98033594	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_98034320_98039164_98039270_98040531_98040692_98043481
transcript_33243.known	chr15	-	1100	4	FSM	ENSMUSG00000048175.14	ENSMUST00000123626.8	1100	4	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_3	16.7531091641721	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGCTGTGTGGTTTAT	NA	False	NA	NA	False	NA	NA	NA	98043587	98033594	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_98034320_98039164_98039270_98040531_98040696_98043481
transcript_33244.known	chr15	-	1776	3	FSM	ENSMUSG00000090129.11	ENSMUST00000170618.8	1776	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTTGCCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	98118937	98104851	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_98106259_98107884_98108005_98118688
transcript_33247.known	chr15	-	3596	10	FSM	ENSMUSG00000022992.18	ENSMUST00000230542.2	3596	10	0	0	0	0	multi-exon	FALSE	canonical	1	385	junction_5	229.121025758101	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTGGACGGAATCATGTT	NA	False	NA	NA	False	NA	NA	NA	98432145	98415538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_98417429_98418198_98418307_98422339_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98431782
transcript_33248.nic	chr15	-	2148	10	NIC	ENSMUSG00000022992.18	novel	3596	10	NA	NA	-53	0	combination_of_known_junctions	FALSE	canonical	1	77	junction_9	343.824388135198	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAGTGTAAAGTGATCTG	NA	False	NA	-21	True	ATTAAA	-14	NA	98432198	98416700	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_98417429_98418198_98418307_98422339_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98432121
transcript_33249.nic	chr15	-	2046	10	NIC	ENSMUSG00000022992.18	novel	2324	10	NA	NA	-53	0	combination_of_known_junctions	FALSE	canonical	1	77	junction_9	387.907205398405	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAGTGTAAAGTGATCTG	NA	False	NA	-21	True	ATTAAA	-14	NA	98432198	98416700	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_98417429_98418198_98418307_98422441_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98432121
transcript_33251.known	chr15	-	1980	9	FSM	ENSMUSG00000022992.18	ENSMUST00000231066.2	1980	9	0	0	0	0	multi-exon	FALSE	canonical	1	77	junction_8	414.912038870891	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAGTGTAAAGTGATCTG	NA	False	NA	-21	True	ATTAAA	-14	NA	98432145	98416700	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_98417429_98418198_98418307_98422339_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429600_98429780_98431398_98431658_98432121
transcript_33252.known	chr15	-	683	2	FSM	ENSMUSG00000011960.13	ENSMUST00000163180.2	683	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATACCTGATCCTTGTTTG	NA	False	NA	NA	False	AATAAA	-12	NA	98440901	98436579	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_98436997_98440635
transcript_33253.known	chr15	-	2175	9	FSM	ENSMUSG00000011960.13	ENSMUST00000012104.7	2175	9	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	11.1439445440113	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98465517	98441091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_98442490_98444404_98444476_98444625_98444790_98446546_98446593_98449794_98449858_98452481_98452543_98458077_98458207_98462927_98463010_98465356
transcript_33254.known	chr15	+	2147	2	FSM	ENSMUSG00000091050.2	ENSMUST00000163781.2	2147	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAATAAATTATATAT	8817	False	NA	NA	False	NA	NA	NA	98465204	98467464	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_98465407_98465519
transcript_33255.known	chr15	-	2011	8	FSM	ENSMUSG00000011960.13	ENSMUST00000168928.8	2011	8	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	14.8681278071516	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98465517	98441091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_98442490_98444404_98444476_98446546_98446593_98449794_98449858_98452481_98452543_98458077_98458207_98462927_98463010_98465356
transcript_33257.known	chr15	-	3187	17	FSM	ENSMUSG00000003360.16	ENSMUST00000003450.15	3187	17	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	5.44252641243017	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTCAGCCCCGAGCTCC	6999	False	NA	-14	True	AATAAA	-15	NA	98560770	98543014	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_98543899_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549480_98549798_98549938_98550353_98550420_98550768_98550863_98554482_98554594_98556110_98556317_98560703
transcript_33263.known	chr15	-	610	2	FSM	ENSMUSG00000003360.16	ENSMUST00000159170.2	610	2	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGGCCTCAGTGATAAAG	6999	False	NA	NA	False	NA	NA	NA	98560770	98555773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_98556317_98560703
transcript_33264.known	chr15	-	889	1	FSM	ENSMUSG00000003360.16	ENSMUST00000228973.2	889	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAATTAAAAAAAAAAAACAA	6994	False	NA	NA	False	NA	NA	NA	98560775	98559886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_98559900_98560800
transcript_33265.known	chr15	-	1034	5	FSM	ENSMUSG00000054855.14	ENSMUST00000109149.9	1034	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	18.1176709319934	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAAGGGGGGGGGCT	NA	False	NA	NA	False	TATAAA	-12	NA	98575341	98561301	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_98561772_98570391_98570527_98571726_98571837_98574367_98574456_98575110
transcript_33266.known	chr15	-	2203	5	FSM	ENSMUSG00000054855.14	ENSMUST00000003451.11	2203	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	4.54835134966506	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGGAGCAGCGCTCTCAA	NA	False	NA	NA	False	NA	NA	NA	98575342	98567085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_98568724_98570391_98570527_98571726_98571837_98574367_98574456_98575110
transcript_33268.known	chr15	+	1900	8	FSM	ENSMUSG00000003354.7	ENSMUST00000003444.6	1900	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.12485826771597	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCCTGTAGTTTGGAAGT	NA	False	NA	NA	False	AATAAA	-18	NA	98606087	98621217	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_98606418_98606935_98607104_98615304_98615475_98616592_98616732_98618464_98618663_98618838_98619058_98620398_98620552_98620694
transcript_33269.known	chr15	+	566	3	FSM	ENSMUSG00000003354.7	ENSMUST00000229471.2	566	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTCTGTATTCCCTGTA	NA	False	NA	NA	False	AATAAA	-19	NA	98606111	98608751	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_98606418_98606935_98607104_98608659
transcript_33271.nnic	chr15	-	666	5	NNC	ENSMUSG00000003355.8	novel	734	6	NA	NA	487	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_4	286.193116618831	251	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTATTTTTCACTCGGT	NA	False	NA	NA	False	AATAAA	-19	NA	98625534	98622246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_98622484_98624364_98624436_98624780_98624815_98625091_98625180_98625298
transcript_33276.known	chr15	-	734	6	FSM	ENSMUSG00000003355.8	ENSMUST00000003445.8	734	6	0	0	0	0	multi-exon	FALSE	canonical	3	632	junction_4	33.5177564881661	5006	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACGTTGTATTTTTCACT	NA	False	NA	NA	False	AATAAA	-15	NA	98626079	98622250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_98622484_98624364_98624436_98624780_98624815_98625091_98625180_98625563_98625630_98625837
transcript_33277.known	chr15	-	1314	4	FSM	ENSMUSG00000003355.8	ENSMUST00000230743.2	1314	4	0	0	0	0	multi-exon	FALSE	canonical	3	632	junction_2	35.1220095603249	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTATTTTTCACTCGGT	NA	False	NA	NA	False	AATAAA	-19	NA	98626033	98622246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_98622484_98624364_98625180_98625563_98625630_98625837
transcript_33278.known	chr15	-	4566	5	FSM	ENSMUSG00000051853.11	ENSMUST00000053183.12	4566	5	0	0	0	0	multi-exon	FALSE	canonical	3	612	junction_3	18.4712614620659	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGGTTTCCTTTTCCTCCA	1799	False	NA	NA	False	NA	NA	NA	98661092	98634514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_98638376_98638871_98638997_98639204_98639316_98640473_98640711_98660860
transcript_3328.nic	chr1	+	3371	15	NIC	ENSMUSG00000070732.3	novel	3851	16	NA	NA	-99	0	combination_of_known_junctions	TRUE	canonical	3	55	junction_1	30.8108945746435	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAAGACTCCAAGCTGTAT	4151	False	NA	32	True	TATAAA	-20	NA	91072711	91098015	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_91072892_91079886_91081383_91081615_91081675_91083106_91083278_91084376_91084561_91084639_91084663_91084785_91084871_91090079_91090195_91090773_91090903_91092635_91092716_91092816_91092888_91094520_91094807_91096414_91096561_91096678_91096819_91097809
transcript_33291.known	chr15	-	1652	12	FSM	ENSMUSG00000067713.8	ENSMUST00000168846.3	1652	12	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_11	39.9075377622816	2092	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTTGATTTCTGC	9349	False	NA	-4	True	ATTAAA	-22	NA	98729402	98710677	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_98711362_98711477_98711625_98711886_98711925_98712068_98712235_98712389_98712517_98713063_98713119_98713194_98713241_98713377_98713437_98713539_98713622_98713756_98713867_98723568_98723615_98729310
transcript_33295.known	chr15	-	1069	8	FSM	ENSMUSG00000023755.11	ENSMUST00000229348.2	1069	8	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_5	69.0784824290016	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTGTCTGGAGAGAGC	NA	False	NA	-22	True	AATAAA	-20	NA	98779157	98775658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_98776179_98776333_98776416_98776888_98776937_98777139_98777197_98777285_98777369_98777645_98777726_98778388_98778461_98779030
transcript_33298.known	chr15	-	2304	17	FSM	ENSMUSG00000022999.16	ENSMUST00000023736.10	2304	17	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_9	10.4395581803063	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTTGTCCCTGTGTCTAT	NA	False	NA	-3	True	AATAAA	-35	NA	98816112	98801797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_98802390_98802545_98802708_98803796_98803864_98804124_98804216_98805417_98805492_98805774_98805853_98806400_98806478_98806556_98806641_98806729_98806803_98807083_98807149_98807268_98807338_98809376_98809504_98810024_98810129_98810278_98810419_98811437_98811472_98813017_98813103_98815730
transcript_33307.known	chr15	-	380	3	FSM	ENSMUSG00000022999.16	ENSMUST00000128818.2	380	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	1	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCAGAAGAGAAGGAGCTGT	NA	False	NA	NA	False	NA	NA	NA	98815936	98811382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_98811472_98813017_98813103_98815730
transcript_33308.nnic	chr15	+	690	2	Antisense	novelGene_ENSMUSG00000022999.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	10	junction_1	0	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTGTACTTTCCTGTAAT	NA	False	NA	NA	False	AATAAA	-21	NA	98815512	98827438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr15_+_98815938_98827173
transcript_3332.known	chr1	+	556	3	FSM	ENSMUSG00000070732.3	ENSMUST00000185229.2	556	3	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_2	3.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAAGACTCCAAGCTGTAT	2786	False	NA	32	True	TATAAA	-20	NA	91096350	91098015	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_91096561_91096678_91096819_91097809
transcript_3335.known	chr1	+	1154	11	FSM	ENSMUSG00000034343.15	ENSMUST00000059743.12	1154	11	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	126.177692164661	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATTGGCAATAAGAAACCC	311	False	NA	NA	False	NA	NA	NA	91178032	91213462	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_91178160_91181481_91181550_91181981_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
transcript_33356.known	chr15	+	1345	2	FSM	ENSMUSG00000116223.2	ENSMUST00000229156.2	1345	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCATTGTTTGAGAGATA	1346	False	NA	NA	False	AATAAA	-18	NA	98832205	98838434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_98832301_98837184
transcript_33357.known	chr15	+	339	2	FSM	ENSMUSG00000116223.2	ENSMUST00000229635.2	339	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGTATCGGTGACACAATA	1668	False	NA	NA	False	NA	NA	NA	98832527	98837343	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_98832708_98837184
transcript_33360.known	chr15	-	1743	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	0	0	0	0	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	47577	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTCTGGATACTTTGT	31	False	NA	NA	False	AGTAAA	-18	NA	98832446	98829305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
transcript_33361.known	chr15	-	1803	4	FSM	ENSMUSG00000072235.7	ENSMUST00000097014.7	1803	4	0	0	0	0	multi-exon	FALSE	canonical	3	1268	junction_3	1593.04014038846	11005	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTTGTGTTCTATATT	NA	False	NA	-4	True	AATAAA	-19	NA	98851584	98847717	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_98848896_98849068_98849218_98849349_98849573_98851331
transcript_33364.known	chr15	+	1982	4	FSM	ENSMUSG00000043091.10	ENSMUST00000058914.10	1982	4	0	0	0	0	multi-exon	FALSE	canonical	3	774	junction_1	4660.1984459415	5922	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGGCATCTGGTTCATA	NA	False	NA	15	True	AATAAA	-22	NA	98927771	98935991	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_98928306_98931974_98932198_98932329_98932479_98934915
transcript_33365.known	chr15	+	1757	9	FSM	ENSMUSG00000023484.15	ENSMUST00000024249.5	1757	9	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	6.35290287978653	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTACTGTGTTGGTCTG	-1	True	NA	6	True	AATAAA	-18	NA	98953061	98956854	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_98953645_98953984_98954046_98954221_98954318_98954649_98954818_98954913_98955040_98955138_98955360_98955448_98955499_98955696_98955777_98956482
transcript_33366.nic	chr15	+	1382	8	ISM	ENSMUSG00000023484.15	ENSMUST00000024249.5	1757	9	715	0	-74	0	3prime_fragment	FALSE	canonical	3	16	junction_1	6.19743198956682	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTACTGTGTTGGTCTG	20	False	NA	6	True	AATAAA	-18	NA	98953776	98956854	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_+_98954046_98954221_98954318_98954649_98954818_98954913_98955040_98955138_98955360_98955448_98955499_98955696_98955777_98956482
transcript_33372.known	chr15	+	2639	14	FSM	ENSMUSG00000032783.10	ENSMUST00000230054.2	2639	14	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	17.6655315775427	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGCAGCCAGTGCTGTTG	NA	False	NA	14	True	AATAAA	-23	NA	98972455	98981290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_98972949_98973230_98973380_98973488_98973679_98975168_98975327_98975409_98975548_98975712_98975793_98976127_98976205_98976664_98976784_98978746_98978831_98979071_98979132_98979715_98979851_98980006_98980587_98980789_98980984_98981108
transcript_33373.known	chr15	+	2255	14	FSM	ENSMUSG00000032783.10	ENSMUST00000039665.8	2255	14	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	8.88852727732572	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAATGGGGCAGCCAGTG	NA	False	NA	8	True	AATAAA	-17	NA	98972858	98981284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_98972974_98973230_98973380_98973488_98973679_98975168_98975327_98975409_98975548_98975712_98975793_98976127_98976205_98976664_98976784_98978746_98978831_98979071_98979132_98979715_98979851_98980006_98980587_98980789_98980984_98981108
transcript_33376.nic	chr15	+	691	3	ISM	ENSMUSG00000032783.10	ENSMUST00000230054.2	2639	14	410	7343	-2	0	5prime_fragment	FALSE	canonical	3	25	junction_1	32.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAAGACATCTT	NA	False	NA	NA	False	NA	NA	NA	98972865	98973947	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_+_98972949_98973230_98973380_98973488
transcript_33377.nic	chr15	+	1107	3	ISM	ENSMUSG00000032783.10	ENSMUST00000230054.2	2639	14	139	7198	139	145	5prime_fragment	FALSE	canonical	3	25	junction_1	32.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAAGATTTATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	98972594	98974092	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_+_98972949_98973230_98973380_98973488
transcript_33378.known	chr15	+	714	3	FSM	ENSMUSG00000032783.10	ENSMUST00000230868.2	714	3	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	11	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAAGACATCTT	NA	False	NA	NA	False	NA	NA	NA	98972867	98973947	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_98972974_98973230_98973380_98973488
transcript_33380.known	chr15	-	1474	2	FSM	ENSMUSG00000001076.8	ENSMUST00000064462.5	1474	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTCTGCCTACCTTGG	6909	False	NA	NA	False	AATAAA	-17	NA	98985698	98981966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_98982815_98985072
transcript_33384.nnic	chr15	+	1499	3	NNC	ENSMUSG00000038009.8	novel	1564	3	NA	NA	-137	-86	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	18.5	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACCGTCTCCTCGATTATA	3886	False	NA	-83	True	AATATA	-21	NA	98997155	99002532	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_98997366_98998703_98999657_99002196
transcript_33385.nnic	chr15	+	1585	3	NNC	ENSMUSG00000038009.8	novel	1564	3	NA	NA	-137	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	18.5	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCACGGAATCCTAGCCCA	3886	False	NA	3	True	AATAAA	-21	NA	98997155	99002618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_98997366_98998703_98999657_99002196
transcript_33386.known	chr15	+	1564	3	FSM	ENSMUSG00000038009.8	ENSMUST00000061295.7	1564	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	3.5	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCACGGAATCCTAGCCCA	4023	False	NA	3	True	AATAAA	-21	NA	98997292	99002618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_98997482_98998703_98999657_99002196
transcript_33387.known	chr15	+	3096	13	FSM	ENSMUSG00000051934.6	ENSMUST00000063517.6	3096	13	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_2	25.9147909289056	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTAGCGCCGTCTCTCT	NA	False	NA	18	True	AATAAA	-23	NA	99024436	99111096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_99024769_99047514_99047812_99064960_99065041_99071282_99071392_99072282_99072333_99076187_99076447_99078461_99078642_99083839_99083976_99097088_99097148_99103478_99103589_99106713_99106817_99108762_99108978_99109930
transcript_33392.known	chr15	-	1771	14	FSM	ENSMUSG00000037570.17	ENSMUST00000163506.3	1771	14	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_13	210.299476515005	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAAGTAGCTTCTTTTAT	NA	False	NA	-8	True	AATAAA	-12	NA	99149826	99140706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99149742
transcript_33399.known	chr15	+	1428	1	FSM	ENSMUSG00000100599.3	ENSMUST00000190683.2	1428	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAAGTT	NA	False	NA	NA	False	NA	NA	NA	99149718	99151146	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_99149700_99151100
transcript_33400.known	chr15	-	1916	15	FSM	ENSMUSG00000037570.17	ENSMUST00000041190.17	1916	15	0	0	0	0	multi-exon	FALSE	canonical	3	647	junction_2	85.1129201923742	710	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTTTTATTTTTTTTTA	NA	False	NA	1	True	AATAAA	-21	NA	99149842	99140697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99148343_99148464_99149742
transcript_33401.known	chr15	-	1521	11	FSM	ENSMUSG00000037570.17	ENSMUST00000230444.2	1521	11	0	0	0	0	multi-exon	FALSE	canonical	3	647	junction_2	90.6366923491805	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCTTTTATTTTTTTTT	NA	False	NA	0	True	AATAAA	-20	NA	99146845	99140698	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582
transcript_33402.known	chr15	+	391	3	FSM	ENSMUSG00000100599.3	ENSMUST00000187967.2	391	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCTTTATTTATTTATTT	NA	False	NA	NA	False	NA	NA	NA	99149668	99159925	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_99149883_99159505_99159590_99159832
transcript_33407.known	chr15	+	3129	25	FSM	ENSMUSG00000023007.16	ENSMUST00000118287.9	3129	25	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_20	24.7694578395787	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATCTACAACTCCTTTGT	NA	False	NA	33	True	TTTAAA	-14	NA	99201164	99214888	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_99201245_99201921_99202066_99202305_99202372_99203046_99203075_99203288_99203315_99203421_99203533_99203831_99203953_99204042_99204068_99204276_99204481_99204685_99204813_99204893_99204959_99205437_99205603_99205702_99205812_99206071_99206223_99206943_99207078_99207565_99207681_99207824_99207917_99212458_99212576_99212723_99212862_99213071_99213168_99213360_99213451_99213603_99213782_99213967_99214030_99214123_99214262_99214341
transcript_33408.known	chr15	+	2740	23	FSM	ENSMUSG00000023007.16	ENSMUST00000130575.8	2740	23	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_1	41.7110287256904	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAACCAAGAAAA	NA	False	NA	NA	False	TTTAAA	-37	NA	99193121	99213995	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_99193310_99201163_99201245_99201921_99202066_99202305_99202372_99203046_99203075_99203288_99203315_99203421_99203533_99203831_99203953_99204042_99204068_99204276_99204481_99204685_99204813_99204893_99204959_99205437_99205603_99205702_99205812_99206071_99206223_99206943_99207078_99207565_99207917_99212458_99212576_99212723_99212862_99213071_99213168_99213363_99213451_99213603_99213782_99213967
transcript_33410.known	chr15	+	871	11	FSM	ENSMUSG00000023010.16	ENSMUST00000160635.8	871	11	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	734.518481727996	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCACCCCCCCACCCCTGT	NA	False	NA	-67	True	NA	NA	NA	99290866	99306417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_99290922_99291575_99291612_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
transcript_33413.known	chr15	+	1148	11	FSM	ENSMUSG00000023010.16	ENSMUST00000161250.8	1148	11	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	709.276455269735	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTGAAATTTTTTGATC	NA	False	NA	-27	True	AATGAA	-37	NA	99290866	99306515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_99290922_99297537_99297753_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
transcript_33417.known	chr15	+	901	11	FSM	ENSMUSG00000023010.16	ENSMUST00000161778.8	901	11	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	735.13686480818	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTGACCAACTGGCCGTC	NA	False	NA	NA	False	AAGAAA	-6	NA	99290902	99306372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_99290922_99297941_99298089_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
transcript_33419.known	chr15	+	944	10	FSM	ENSMUSG00000023010.16	ENSMUST00000159209.8	944	10	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	555.512064964378	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCACCCCCCCACCCCTG	NA	False	NA	-68	True	NA	NA	NA	99291099	99306416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_99291265_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
transcript_33424.known	chr15	+	577	8	FSM	ENSMUSG00000023010.16	ENSMUST00000229392.2	577	8	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_1	638.084601901404	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGTGACCAACTGGCCG	NA	False	NA	NA	False	AAGAAA	-4	NA	99290884	99306370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_99290922_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
transcript_33428.known	chr15	+	2452	10	FSM	ENSMUSG00000023010.16	ENSMUST00000023749.15	2452	10	0	0	0	0	multi-exon	FALSE	canonical	3	1506	junction_9	135.383406171756	1318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTGTCTCAGTGTTAAAT	NA	False	NA	15	True	AATAAA	-20	NA	99290762	99307930	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_99290922_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
transcript_33429.known	chr15	-	1276	2	FSM	ENSMUSG00000037525.6	ENSMUST00000040313.6	1276	2	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	0	394	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGTGTCGTTTCTTTGCT	NA	False	NA	0	True	ATTAAA	-19	NA	99372611	99367959	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_99368961_99372336
transcript_33430.known	chr15	-	3052	18	FSM	ENSMUSG00000023015.15	ENSMUST00000171702.8	3052	18	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_16	174.822975218819	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATGTTGGTTTTCTTGTC	NA	False	NA	0	True	AATAAA	-20	NA	99549524	99518376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99541273_99541405_99549387
transcript_33435.known	chr15	-	374	4	FSM	ENSMUSG00000023015.15	ENSMUST00000109581.3	374	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	266.131546420187	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACTTCGAGGACTTCCGA	NA	False	NA	NA	False	NA	NA	NA	99549524	99537679	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_99537701_99540763_99540849_99541273_99541405_99549387
transcript_33436.known	chr15	-	2933	17	FSM	ENSMUSG00000023015.15	ENSMUST00000023756.12	2933	17	0	0	0	0	multi-exon	FALSE	canonical	3	453	junction_16	66.1194172974173	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGATGTTGGTTTTCTTGT	NA	False	NA	-1	True	AATAAA	-19	NA	99549537	99518377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99549387
transcript_33437.known	chr15	+	3307	13	FSM	ENSMUSG00000023018.6	ENSMUST00000023759.6	3307	13	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_12	25.0281785638153	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCCCTGCTGTCTGGAGGG	7541	False	NA	26	True	AATAAA	-17	NA	99600009	99611872	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_99600380_99600986_99601175_99601471_99601515_99601618_99601742_99602211_99602335_99603507_99603625_99605191_99605294_99605520_99605683_99605765_99605864_99607161_99607298_99608973_99609097_99610039_99610142_99610252
transcript_3344.known	chr1	+	5654	10	FSM	ENSMUSG00000034343.15	ENSMUST00000171165.8	5654	10	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	86.300651614781	628	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGGTGTTTTAGTTAGGA	337	False	NA	NA	False	NA	NA	NA	91178058	91218059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_91178160_91181984_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
transcript_33441.known	chr15	-	252	1	FSM	ENSMUSG00000115938.2	ENSMUST00000230504.2	252	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	228	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAGCCCCTGATTGAAGA	NA	False	NA	NA	False	NA	NA	NA	99604694	99604442	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_99604400_99604700
transcript_33446.known	chr15	-	4243	11	FSM	ENSMUSG00000023022.15	ENSMUST00000073691.5	4243	11	0	0	0	0	multi-exon	FALSE	canonical	3	692	junction_4	128.449367456597	872	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCAGTGTCCACACTGCT	7238	False	NA	-3	True	AATAAA	-15	NA	99773337	99676350	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_99679172_99681400_99681535_99692289_99692400_99694622_99694681_99699991_99700094_99704303_99704453_99705539_99705625_99717374_99717840_99724672_99724719_99741555_99741705_99773213
transcript_33451.known	chr15	-	2680	2	FSM	ENSMUSG00000023022.15	ENSMUST00000171450.2	2680	2	0	0	0	0	multi-exon	FALSE	canonical	3	1109	junction_1	0	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAACAAAAAAAAAA	7278	False	NA	NA	False	NA	NA	NA	99773297	99739108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_99741705_99773213
transcript_33452.known	chr15	-	294	1	FSM	ENSMUSG00000092014.2	ENSMUST00000170206.2	294	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	172	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATTTCAATCAGTCATAAA	NA	False	NA	NA	False	NA	NA	NA	99708463	99708169	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_99708200_99708500
transcript_33453.known	chr15	-	2096	10	FSM	ENSMUSG00000023021.16	ENSMUST00000023762.13	2096	10	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_2	16.8332416572494	819	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGTCTCTTTAGTA	NA	False	NA	-3	True	ATTAAA	-15	NA	99670482	99633472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_99634318_99636545_99636703_99637286_99637394_99637482_99637612_99638824_99638918_99639489_99639541_99643769_99643828_99644917_99645049_99649116_99649223_99670063
transcript_33454.known	chr15	-	2775	11	FSM	ENSMUSG00000023021.16	ENSMUST00000109035.11	2775	11	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	103.150569557322	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCCTTAGTTAATGGTGT	NA	False	NA	NA	False	NA	NA	NA	99670343	99632761	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_99634318_99635427_99635535_99636545_99636703_99637286_99637394_99637482_99637612_99638824_99638918_99639489_99639541_99643769_99643828_99644917_99645049_99649116_99649223_99670063
transcript_33455.known	chr15	-	405	2	FSM	ENSMUSG00000023022.15	ENSMUST00000230033.2	405	2	0	0	0	0	multi-exon	FALSE	canonical	3	692	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAAAGAAATTAAA	6832	False	NA	NA	False	NA	NA	NA	99700014	99694298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_99694681_99699991
transcript_33459.known	chr15	+	561	4	FSM	ENSMUSG00000096111.8	ENSMUST00000180309.2	561	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTGGGATTATGCACAGC	8441	False	NA	NA	False	NA	NA	NA	99829591	99850433	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_99829784_99830695_99830869_99831367_99831496_99850365
transcript_33460.known	chr15	+	575	3	FSM	ENSMUSG00000096111.8	ENSMUST00000179575.8	575	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTTAGGTGGTTTCTTGG	8441	False	NA	NA	False	NA	NA	NA	99829591	99831577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_99829784_99830695_99830869_99831367
transcript_33461.known	chr15	+	666	2	FSM	ENSMUSG00000096111.8	ENSMUST00000177831.2	666	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATATAAATAAATCTTAAA	NA	False	NA	NA	False	NA	NA	NA	99832693	99850925	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_99832800_99850365
transcript_33462.known	chr15	+	6530	16	FSM	ENSMUSG00000023025.17	ENSMUST00000100206.4	6530	16	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_1	85.9835643209406	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTTTCTTTTTTCCA	NA	False	NA	NA	False	AATAAA	-15	NA	99870660	99914239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_99870865_99882800_99882937_99883918_99884075_99885283_99885360_99888173_99888311_99889605_99889710_99891203_99891315_99892544_99892599_99894347_99894558_99895253_99895358_99898716_99898930_99899682_99899732_99903121_99903284_99905487_99905610_99908172_99908342_99909716
transcript_3347.known	chr1	+	1110	10	FSM	ENSMUSG00000034343.15	ENSMUST00000191368.7	1110	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	94.7511360236793	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGATGCACACTCTCTTA	365	False	NA	NA	False	TATAAA	-6	NA	91178086	91213495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_91178160_91181936_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
transcript_33471.known	chr15	-	1130	1	FSM	ENSMUSG00000100084.3	ENSMUST00000188271.3	1130	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATTTTTACTAGAGTTAT	4286	False	NA	NA	False	AATAAA	-19	NA	99871168	99870038	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_99870000_99871200
transcript_33472.known	chr15	+	1420	6	FSM	ENSMUSG00000023025.17	ENSMUST00000229553.2	1420	6	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_1	135.204141948389	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAATGTTTAGGT	NA	False	NA	NA	False	NA	NA	NA	99870717	99890373	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_99870865_99882800_99882937_99883918_99884075_99885283_99885360_99888173_99888311_99889605
transcript_33475.nnic	chr15	+	2345	8	NNC	ENSMUSG00000023027.14	novel	2365	7	NA	NA	-20	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	110.684143362257	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTCGGAATGCAAAACAT	NA	False	NA	17	True	ATTAAA	-20	NA	100125679	100159129	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_100125964_100130613_100130713_100143125_100143227_100149949_100150081_100151974_100152155_100152234_100152395_100157695_100158165_100158208
transcript_33477.nnic	chr15	+	2344	8	NNC	ENSMUSG00000023027.14	novel	2365	7	NA	NA	-20	4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	110.684143362257	456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTCGGAATGCAAAACAT	NA	False	NA	17	True	ATTAAA	-20	NA	100125679	100159129	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_100125964_100130613_100130713_100143125_100143227_100149949_100150081_100151974_100152155_100152234_100152395_100157695_100158179_100158223
transcript_33482.known	chr15	+	2365	7	FSM	ENSMUSG00000023027.14	ENSMUST00000023769.11	2365	7	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_1	32.1334024895521	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTTTTCGGAATGCAAA	NA	False	NA	13	True	ATTAAA	-16	NA	100125699	100159125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_100125964_100130613_100130713_100143125_100143227_100149949_100150081_100151974_100152155_100152234_100152395_100157695
transcript_33492.nic	chr15	+	2284	6	NIC	ENSMUSG00000023027.14	novel	2365	7	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_2	106.576920578519	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTTTTCGGAATGCAAA	NA	False	NA	13	True	ATTAAA	-16	NA	100125679	100159125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_+_100125964_100130613_100130713_100149949_100150081_100151974_100152155_100152234_100152395_100157695
transcript_33494.nic	chr15	+	606	2	ISM	ENSMUSG00000023027.14	ENSMUST00000163855.8	831	6	-72	21394	-20	41	5prime_fragment	FALSE	canonical	3	255	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGGCGTTAGGGCTTAT	NA	False	NA	NA	False	AAAAAG	-1	NA	100125679	100130935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_+_100125964_100130613
transcript_33495.known	chr15	+	426	2	FSM	ENSMUSG00000023027.14	ENSMUST00000166809.2	426	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGACTCTTTCTCCTAAA	NA	False	NA	NA	False	ACTAAA	-45	NA	100130051	100130894	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_100130197_100130613
transcript_33497.known	chr15	+	931	3	FSM	ENSMUSG00000045631.11	ENSMUST00000230901.2	931	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGAACATTTTTACTTT	NA	False	NA	NA	False	TATAAA	-18	NA	100178721	100183548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_100178915_100180112_100180309_100183006
transcript_33498.known	chr15	+	674	3	FSM	ENSMUSG00000054619.8	ENSMUST00000230472.2	674	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	9	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACCATAGAGCAGGCCAG	2732	False	NA	NA	False	NA	NA	NA	100202020	100211003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_100202144_100202803_100203226_100210874
transcript_33499.known	chr15	+	1946	2	FSM	ENSMUSG00000054619.8	ENSMUST00000067752.5	1946	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGGCTGCATTTGTGTC	538	False	NA	12	True	AATAAA	-28	NA	100202641	100212236	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_100203226_100210874
transcript_33500.known	chr15	+	1652	2	FSM	ENSMUSG00000058057.6	ENSMUST00000075420.6	1652	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAATAATAATAATAATAAAA	4482	False	NA	NA	False	NA	NA	NA	100232809	100238256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_100233309_100237103
transcript_33501.known	chr15	+	1800	2	FSM	ENSMUSG00000056487.9	ENSMUST00000088142.6	1800	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCTTGGCTGCATTTGTG	4849	False	NA	NA	False	GATAAA	-16	NA	100251080	100259721	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_100251589_100258429
transcript_33503.nnic	chr15	-	2996	18	NNC	ENSMUSG00000023030.17	novel	3025	17	NA	NA	-96	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	53.8380244062904	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGTCTAGGGGTGCGA	NA	False	NA	NA	False	AATAAA	-22	NA	100321032	100285778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_100286319_100286443_100287043_100293150_100293205_100295544_100295699_100297294_100297369_100299148_100299299_100299432_100299553_100300178_100300266_100301061_100301221_100301688_100301845_100303456_100303525_100303624_100303696_100304160_100304268_100305981_100306102_100307080_100307207_100307963_100308113_100310071_100310144_100320842
transcript_33504.nnic	chr15	-	2876	18	NNC	ENSMUSG00000023030.17	novel	3025	17	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	53.8380244062904	43	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGTCTAGGGGTGCGA	NA	False	NA	NA	False	AATAAA	-22	NA	100320933	100285778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_100286362_100286507_100287043_100293150_100293205_100295544_100295699_100297294_100297369_100299148_100299299_100299432_100299553_100300178_100300266_100301061_100301221_100301688_100301845_100303456_100303525_100303624_100303696_100304160_100304268_100305981_100306102_100307080_100307207_100307963_100308113_100310071_100310144_100320842
transcript_33506.known	chr15	-	3025	17	FSM	ENSMUSG00000023030.17	ENSMUST00000023774.12	3025	17	0	0	0	0	multi-exon	FALSE	canonical	1	67	junction_1	39.2515923243886	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGTCTAGGGGTGCGA	NA	False	NA	NA	False	AATAAA	-22	NA	100320936	100285778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_100287043_100293150_100293205_100295544_100295699_100297294_100297369_100299148_100299299_100299432_100299553_100300178_100300266_100301061_100301221_100301688_100301845_100303456_100303525_100303624_100303696_100304160_100304268_100305981_100306102_100307080_100307207_100307963_100308113_100310071_100310144_100320842
transcript_33507.known	chr15	-	4415	16	FSM	ENSMUSG00000023030.17	ENSMUST00000138843.8	4415	16	0	0	0	0	multi-exon	FALSE	canonical	1	68	junction_8	31.7016648704063	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGGGACACACTTTAAGT	NA	False	NA	80	True	AATAAA	-19	NA	100320883	100290443	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_100293205_100295544_100295699_100297294_100297369_100299148_100299299_100299432_100299553_100300178_100300266_100301061_100301221_100301688_100301845_100303456_100303525_100303624_100303696_100304160_100304268_100305981_100306102_100307080_100307207_100307963_100308113_100310071_100310144_100320842
transcript_33512.known	chr15	+	1222	9	FSM	ENSMUSG00000037353.10	ENSMUST00000229648.2	1222	9	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	16.3587705833904	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTTTTATTGTGATGTA	2419	False	NA	NA	False	NA	NA	NA	100366987	100375956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_100367020_100367565_100367718_100369540_100369657_100370429_100370513_100372903_100373091_100373186_100373289_100373382_100373536_100374670_100374768_100375656
transcript_33515.known	chr15	+	2502	9	FSM	ENSMUSG00000037353.10	ENSMUST00000037001.10	2502	9	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	24.1761116600664	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCTGGGAATTACTTATG	2335	False	NA	27	True	AGTAAA	-16	NA	100366903	100377045	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_100367127_100367565_100367718_100369540_100369657_100370429_100370513_100372903_100373091_100373186_100373289_100373382_100373536_100374670_100374768_100375656
transcript_33518.known	chr15	+	2266	8	FSM	ENSMUSG00000037353.10	ENSMUST00000230294.2	2266	8	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	31.1808418417333	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTCTGGGAATTACTTAT	2347	False	NA	26	True	AGTAAA	-15	NA	100366915	100377044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_100367020_100367565_100367718_100370429_100370513_100372903_100373091_100373186_100373289_100373382_100373536_100374670_100374768_100375656
transcript_33524.known	chr15	-	3302	16	FSM	ENSMUSG00000009733.10	ENSMUST00000229696.2	3302	16	0	0	0	0	multi-exon	TRUE	canonical	3	68	junction_1	18.9415475139235	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTAATTTCTTTTGGTCT	NA	False	NA	50	True	ATTAAA	-18	NA	100449889	100400627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_100402325_100404086_100404139_100409575_100409719_100410089_100410215_100410961_100411053_100411909_100412004_100412684_100412734_100415830_100415920_100416450_100416562_100418443_100418597_100420269_100420377_100423447_100423554_100425757_100425835_100426275_100426428_100449205_100449363_100449790
transcript_33527.nnic	chr15	-	463	3	NNC	ENSMUSG00000009733.10	novel	371	2	NA	NA	-9	8984	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	36.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTTTTAAAGTGTTTGAAC	NA	False	NA	NA	False	NA	NA	NA	100449898	100434962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_100435161_100449205_100449363_100449790
transcript_33529.known	chr15	-	1903	14	FSM	ENSMUSG00000009733.10	ENSMUST00000229581.2	1903	14	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	28.5781395330696	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAATCTCATTGTCTTGT	NA	False	NA	NA	False	ATTAAA	-40	NA	100449668	100407412	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_100407556_100409575_100409719_100410089_100410215_100410961_100411053_100411909_100412004_100412684_100412734_100415830_100415920_100416450_100416562_100418443_100418597_100420269_100420377_100423447_100423554_100425757_100425835_100426275_100426428_100449205
transcript_33530.known	chr15	-	3654	2	FSM	ENSMUSG00000009739.18	ENSMUST00000177335.2	3654	2	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTTCTCTGCCTATTTTG	8506	False	NA	-3	True	AATAAA	-18	NA	100478112	100473201	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_100476500_100477756
transcript_33532.known	chr15	-	671	1	FSM	ENSMUSG00000116164.2	ENSMUST00000230712.2	671	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGAGTATTCGTGTTTG	NA	False	NA	NA	False	CATAAA	-16	NA	100511724	100511053	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_100511100_100511700
transcript_33533.known	chr15	-	881	2	FSM	ENSMUSG00000097093.3	ENSMUST00000181034.3	881	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACTGTGGTATTTACATT	NA	False	NA	NA	False	ATTAAA	-12	NA	100512991	100512017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_100512572_100512664
transcript_33540.known	chr15	+	2135	4	FSM	ENSMUSG00000000346.10	ENSMUST00000000356.10	2135	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	569.007518013212	2459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCAGCATTCTTTACTTAG	NA	False	NA	18	True	AATAAA	-25	NA	100513229	100518642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_100513606_100514793_100514913_100515805_100516052_100517248
transcript_33544.known	chr15	+	542	4	FSM	ENSMUSG00000000346.10	ENSMUST00000229424.2	542	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	563.556760426332	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAACTTCTTCATGGGTGG	NA	False	NA	NA	False	NA	NA	NA	100513985	100517329	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_100514082_100514793_100514913_100515805_100516052_100517248
transcript_33547.known	chr15	-	1135	4	FSM	ENSMUSG00000053559.14	ENSMUST00000066068.7	1135	4	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_3	209.183067086119	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCCTTGTTCTGCTTAA	NA	False	NA	16	True	ATTAAA	-37	NA	100534736	100519219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_100519908_100520509_100520591_100534067_100534137_100534439
transcript_33549.known	chr15	-	920	4	FSM	ENSMUSG00000053559.14	ENSMUST00000172334.9	920	4	0	0	0	0	multi-exon	FALSE	canonical	3	417	junction_3	158.779371736032	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCCTTTGTTTGATCTGA	NA	False	NA	-94	True	NA	NA	NA	100534821	100519329	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_100519908_100520509_100520591_100534067_100534137_100534629
transcript_33550.known	chr15	-	586	4	FSM	ENSMUSG00000053559.14	ENSMUST00000229965.2	586	4	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_1	287.836759292485	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGACAGTGCTCGAAACCGA	NA	False	NA	NA	False	NA	NA	NA	100534745	100519519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_100519840_100520509_100520591_100534067_100534137_100534629
transcript_33552.known	chr15	-	583	3	FSM	ENSMUSG00000053559.14	ENSMUST00000230517.2	583	3	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_2	367.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCAGGGAGTGGCGTTGGG	NA	False	NA	NA	False	NA	NA	NA	100533440	100519649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_100519908_100520509_100520591_100533196
transcript_33553.known	chr15	-	527	3	FSM	ENSMUSG00000053559.14	ENSMUST00000229307.2	527	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	362	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAGCCCCCAATACCGGA	NA	False	NA	NA	False	NA	NA	NA	100533381	100519599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_100519908_100520509_100520591_100533243
transcript_33555.known	chr15	-	2036	11	FSM	ENSMUSG00000098112.9	ENSMUST00000183211.8	2036	11	0	0	0	0	multi-exon	TRUE	canonical	2	83	junction_1	21.2593508837876	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTGCCCTGAACAGCCA	NA	False	NA	1	True	AATAAA	-23	NA	100567434	100538957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_100539446_100542693_100543421_100546960_100547044_100548080_100548157_100549839_100549926_100550265_100550374_100554075_100554172_100554590_100554686_100554940_100554996_100560397_100560479_100567293
transcript_33556.known	chr15	-	1671	10	FSM	ENSMUSG00000098112.9	ENSMUST00000238935.2	1671	10	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	41.3682648093117	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCTTAATCGTAAGGTTT	NA	False	NA	NA	False	AATAGA	-13	NA	100567386	100542519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_100543418_100546960_100547044_100548080_100548157_100549839_100549926_100550265_100550374_100554075_100554172_100554590_100554686_100554940_100554996_100560397_100560479_100567293
transcript_33560.nnic	chr15	-	891	5	NNC	ENSMUSG00000023031.9	novel	762	4	NA	NA	-131	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	15.5463018110418	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGTGTGCTTGCATTTA	5823	False	NA	-2	True	AATAAA	-16	NA	100581131	100572305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_100572599_100573204_100573355_100579023_100579170_100579674_100579780_100580934
transcript_33562.nnic	chr15	-	846	5	NNC	ENSMUSG00000023031.9	novel	456	4	NA	NA	-112	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	13.4420050587701	47	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGTGTGCTTGCATTTA	5842	False	NA	-2	True	AATAAA	-16	NA	100581112	100572305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_100572599_100573204_100573355_100579023_100579170_100580767_100580847_100580934
transcript_33563.known	chr15	-	456	4	FSM	ENSMUSG00000023031.9	ENSMUST00000229235.2	456	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	10.8730042868667	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGAGCTGAGGTTATCGCT	5954	False	NA	NA	False	NA	NA	NA	100581000	100572504	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_100572599_100573204_100573355_100579023_100579170_100580934
transcript_33566.known	chr15	-	1108	8	FSM	ENSMUSG00000023031.9	ENSMUST00000023775.9	1108	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	12.7998724483441	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGCTTGCATTTATAAT	5885	False	NA	2	True	AATAAA	-20	NA	100585802	100572301	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_100572599_100573204_100573355_100579023_100579170_100580767_100580905_100582460_100582587_100583014_100583116_100585005_100585089_100585734
transcript_33567.known	chr15	-	887	3	FSM	ENSMUSG00000023031.9	ENSMUST00000230740.2	887	3	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	4	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTGCTTGCATTTATAA	7490	False	NA	1	True	AATAAA	-19	NA	100579464	100572302	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_100572599_100573204_100573355_100579023
transcript_33568.known	chr15	-	2746	12	FSM	ENSMUSG00000037280.13	ENSMUST00000161514.2	2746	12	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_7	8.71021059418435	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAGAAAACAGAAAAGGAGT	1674	False	NA	NA	False	NA	NA	NA	100618358	100590744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_100591348_100592450_100592604_100594427_100594530_100594999_100595132_100595658_100595860_100596997_100597116_100601228_100601464_100601991_100602142_100611976_100612150_100613808_100614396_100617895_100618117_100618287
transcript_33570.nic	chr15	-	834	3	ISM	ENSMUSG00000037280.13	ENSMUST00000161514.2	2746	12	-48	23157	-48	-23157	5prime_fragment	FALSE	canonical	3	79	junction_2	12	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAGAAGGCTATAAGAAAC	1626	False	NA	NA	False	AAGAAA	-30	NA	100618406	100613901	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_100614396_100617895_100618117_100618287
transcript_33571.known	chr15	-	3798	12	FSM	ENSMUSG00000037280.13	ENSMUST00000052069.12	3798	12	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_11	26.1268362081583	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAGATGTTGGATTTGAG	9875	False	NA	-9	True	AATAAA	-17	NA	100627257	100589695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_100591348_100592450_100592604_100594427_100594530_100594999_100595132_100595658_100595860_100596997_100597116_100601228_100601464_100601991_100602142_100611976_100612150_100613808_100614396_100617895_100618117_100627183
transcript_33574.known	chr15	+	445	3	FSM	ENSMUSG00000023032.13	ENSMUST00000161564.2	445	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	12.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCAGTTTGGCTGTGATTT	NA	False	NA	NA	False	AATAAA	-18	NA	100659749	100672965	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_100659856_100672510_100672593_100672708
transcript_33575.known	chr15	+	421	2	FSM	ENSMUSG00000023032.13	ENSMUST00000160256.2	421	2	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGGACGTGAAATACTCAT	NA	False	NA	NA	False	CATAAA	-22	NA	100659768	100672844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_100659856_100672510
transcript_33583.nnic	chr15	-	813	2	Antisense	novelGene_ENSMUSG00000023033.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACCCGAGAGCCTGTTAG	NA	False	NA	NA	False	NA	NA	NA	100820295	100819260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr15_-_100819853_100820074
transcript_33585.known	chr15	+	840	4	FSM	ENSMUSG00000023033.15	ENSMUST00000202971.2	840	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	7.25718035235908	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTTGGCCTTGCAGCT	NA	False	NA	NA	False	AATAAA	-24	NA	100868002	100872648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_100868149_100869400_100869543_100870634_100870842_100872303
transcript_33586.known	chr15	+	1818	10	FSM	ENSMUSG00000000530.17	ENSMUST00000119063.8	1818	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCCTCCGTCTGGGCTGC	NA	False	NA	NA	False	AATACA	-18	NA	101026802	101041521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_101026945_101032556_101032625_101033178_101033425_101033629_101033842_101034008_101034109_101034864_101035012_101035244_101035521_101036088_101036287_101038947_101039079_101041223
transcript_33588.known	chr15	+	4418	9	FSM	ENSMUSG00000000532.12	ENSMUST00000000544.12	4418	9	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_8	3.66571957465379	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGATCCCGTCTGCCTT	NA	False	NA	21	True	ATTAAA	-18	NA	101071947	101111565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_101072117_101091812_101092053_101092689_101092939_101096664_101096896_101099858_101100027_101100818_101100976_101102333_101102459_101106960_101107092_101108617
transcript_33591.known	chr15	-	1393	3	FSM	ENSMUSG00000097915.3	ENSMUST00000180639.3	1393	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	3.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCGCCTCTGCTTCTGTGT	335	False	NA	NA	False	AATAAA	-13	NA	101122002	101119075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_101120071_101121361_101121515_101121757
transcript_33593.known	chr15	-	484	3	FSM	ENSMUSG00000097915.3	ENSMUST00000229239.2	484	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	0.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGCCTGATTCCTCTGCG	NA	False	NA	NA	False	NA	NA	NA	101122658	101119905	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_101120071_101121361_101121515_101122492
transcript_33594.nnic	chr15	-	1261	3	NNC	ENSMUSG00000097915.3	novel	1393	3	NA	NA	-29	0	intron_retention	FALSE	canonical	1	1	junction_2	3.5	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCGCCTCTGCTTCTGTGT	NA	False	NA	NA	False	AATAAA	-13	NA	101122687	101119075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_101120071_101121361_101121515_101122574
transcript_33595.known	chr15	-	1008	3	FSM	ENSMUSG00000097915.3	ENSMUST00000229610.2	1008	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	4	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTCGAAGCAGGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	101123067	101119428	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_101120071_101121361_101121515_101122854
transcript_33599.known	chr15	+	2553	8	FSM	ENSMUSG00000023034.8	ENSMUST00000228985.2	2553	8	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	37.8897433754997	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGAGTCTTTTTTTCTGTTT	517	False	NA	19	True	AATAAA	-21	NA	101152149	101172676	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_101152233_101156188_101156308_101167963_101168851_101169616_101169747_101170033_101170186_101170598_101170802_101170895_101171075_101171876
transcript_3360.known	chr1	+	2202	12	FSM	ENSMUSG00000026307.13	ENSMUST00000027532.13	2202	12	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_11	10.6693350656825	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGAAGTGGCCTGGGC	NA	False	NA	15	True	ATTAAA	-24	NA	91226059	91248797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_91226171_91228249_91228363_91230490_91230592_91232995_91233177_91236035_91236164_91236372_91236538_91237518_91237626_91243210_91243248_91244785_91244870_91245313_91245414_91246759_91246836_91247798
transcript_33600.known	chr15	+	2477	7	FSM	ENSMUSG00000023034.8	ENSMUST00000023779.8	2477	7	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	46.5895195653844	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGAGTCTTTTTTTCTGTTT	NA	False	NA	19	True	AATAAA	-21	NA	101164726	101172676	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_101164853_101167963_101168851_101169616_101169747_101170033_101170186_101170598_101170802_101170895_101171075_101171876
transcript_33608.known	chr15	+	1270	3	FSM	ENSMUSG00000037204.8	ENSMUST00000048393.8	1270	3	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_2	16.5	5059	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTCTTGGCCTGTGTCCT	8030	False	NA	31	True	AATAAA	-23	NA	101182152	101188826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_101182427_101184813_101185132_101188148
transcript_33609.nnic	chr15	+	1050	8	NNC	ENSMUSG00000023039.18	novel	3563	8	NA	NA	2656	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	10.6885404971485	101	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGCTGCATCGGCTAGCT	NA	False	NA	6	True	AATAAA	-13	NA	101312985	101325670	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_101313056_101314101_101314163_101316198_101316295_101317383_101317549_101318354_101318481_101321150_101321372_101324969_101325005_101325394
transcript_33610.nnic	chr15	+	958	7	NNC	ENSMUSG00000023039.18	novel	3563	8	NA	NA	2687	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	19.0036546192802	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGCTGCATCGGCTAGCT	NA	False	NA	6	True	AATAAA	-13	NA	101313016	101325670	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_101313056_101316198_101316295_101317383_101317549_101318354_101318481_101321150_101321372_101324969_101325005_101325394
transcript_33611.known	chr15	+	833	4	FSM	ENSMUSG00000116114.2	ENSMUST00000229658.2	833	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	0.816496580927726	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCCTCTGCACCCAGGGG	923	False	NA	NA	False	NA	NA	NA	101262620	101302080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_101262669_101264782_101265322_101301319_101301441_101301955
transcript_33612.known	chr15	-	1958	9	FSM	ENSMUSG00000049382.11	ENSMUST00000023952.10	1958	9	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_8	4.93552175559991	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATGCATTCGTGTAGGT	5892	False	NA	6	True	AATAAA	-32	NA	101912917	101905132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_101905569_101906094_101906154_101906287_101906509_101906825_101906952_101907208_101907374_101907865_101907962_101909014_101909076_101909851_101910061_101912332
transcript_33613.known	chr15	+	1437	7	FSM	ENSMUSG00000023043.8	ENSMUST00000023803.8	1437	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_3	6.13731754650732	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGTCTTCCTTGGCAG	NA	False	NA	12	True	AATAAA	-24	NA	101936614	101940462	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_101937110_101937900_101937984_101938257_101938415_101939053_101939219_101939329_101939456_101939730_101939955_101940275
transcript_33616.known	chr15	+	3854	15	FSM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	0	0	0	0	multi-exon	FALSE	canonical	3	620	junction_1	87.2144027143242	4702	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTAATGTTGCAGTTTAT	NA	False	NA	49	True	AATAAA	-19	NA	101982207	102005608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
transcript_33617.known	chr15	-	2456	11	FSM	ENSMUSG00000036966.16	ENSMUST00000154032.2	2456	11	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_5	18.3913022921162	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGACGGAAGGGGAATCCTT	NA	False	NA	-5	True	AATAAA	-26	NA	102044669	102024962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_102026149_102026475_102026649_102026726_102026847_102027362_102027421_102027702_102027853_102036973_102037160_102038712_102038849_102039100_102039226_102040302_102040379_102041850_102041998_102044570
transcript_3362.known	chr1	+	763	7	FSM	ENSMUSG00000026307.13	ENSMUST00000142488.8	763	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	32.7689724519332	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGCACTGGGGAAGAGGCG	NA	False	NA	NA	False	GGGGCT	-32	NA	91226089	91236465	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_91226171_91227125_91227192_91228249_91228363_91230490_91230592_91232995_91233177_91236035_91236164_91236372
transcript_33620.known	chr15	-	2666	10	FSM	ENSMUSG00000036966.16	ENSMUST00000139279.8	2666	10	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_5	18.7142251301576	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGACGGAAGGGGAATCCTT	NA	False	NA	-5	True	AATAAA	-26	NA	102044627	102024962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_102026149_102026475_102026649_102026726_102026847_102027362_102027421_102027702_102027853_102036973_102037160_102038712_102039226_102040302_102040379_102041850_102041998_102044570
transcript_33622.known	chr15	+	1112	4	FSM	ENSMUSG00000023046.7	ENSMUST00000023807.7	1112	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.471404520791032	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTCTCTGCGTCTGTCTCA	NA	False	NA	NA	False	AATAAA	-28	NA	102052796	102057946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102053320_102056279_102056414_102056536_102056660_102057614
transcript_33623.nnic	chr15	+	681	4	NNC	ENSMUSG00000023046.7	novel	1112	4	NA	NA	1953	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.471404520791032	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTCTCTGCGTCTGTCTCA	NA	False	NA	NA	False	AATAAA	-28	NA	102054749	102057946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_102054842_102056279_102056414_102056536_102056660_102057614
transcript_33624.known	chr15	+	2208	15	FSM	ENSMUSG00000023045.14	ENSMUST00000023806.14	2208	15	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_10	3.76408917893011	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAATCTTGTCTCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	102058960	102071904	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102059148_102059540_102059597_102061582_102061720_102062395_102062456_102062695_102062804_102065246_102065524_102066046_102066117_102066507_102066593_102066988_102067035_102067148_102067279_102069024_102069123_102069486_102069586_102070443_102070580_102070988_102071135_102071331
transcript_33625.nnic	chr15	+	2129	15	NNC	ENSMUSG00000023045.14	novel	1628	13	NA	NA	278	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	5.4962881723459	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAATCTTGTCTCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	102059238	102071904	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_102059347_102059540_102059597_102061582_102061720_102062395_102062456_102062695_102062804_102065246_102065524_102066046_102066117_102066507_102066593_102066988_102067035_102067148_102067279_102069024_102069123_102069486_102069586_102070443_102070580_102070988_102071135_102071331
transcript_33635.nic	chr15	-	2338	16	NIC	ENSMUSG00000023044.3	novel	2279	15	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_15	28.5420547418873	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTGGTATGTTTTAAAG	6232	False	NA	NA	False	AATAAA	-17	NA	102112728	102085433	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_102086222_102086961_102087052_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102097321_102097398_102112573
transcript_33637.known	chr15	-	2279	15	FSM	ENSMUSG00000023044.3	ENSMUST00000023805.3	2279	15	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_14	14.588400480225	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTGGTATGTTTTAAAG	2729	False	NA	NA	False	AATAAA	-17	NA	102097493	102085433	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_102086222_102086961_102087052_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102097321
transcript_3364.known	chr1	-	1368	12	FSM	ENSMUSG00000026309.15	ENSMUST00000027534.13	1368	12	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_9	38.9197096809944	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATTTGAGTGACTGGTCC	NA	False	NA	-8	True	AATAAA	-18	NA	91326505	91303552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_91303805_91304039_91304122_91306187_91306308_91309572_91309695_91311025_91311114_91312286_91312381_91312961_91313069_91314936_91315064_91316066_91316187_91318328_91318386_91318853_91318920_91326372
transcript_33641.known	chr15	-	1786	14	FSM	ENSMUSG00000023044.3	ENSMUST00000230288.2	1786	14	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	33.1450104235363	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAAAAAGAAAAGA	2812	False	NA	NA	False	NA	NA	NA	102097410	102085753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_102086222_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102097321
transcript_3365.known	chr1	-	2342	11	FSM	ENSMUSG00000026309.15	ENSMUST00000187105.7	2342	11	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_8	35.8725521812987	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATTTGAGTGACTGGTC	NA	False	NA	-9	True	AATAAA	-17	NA	91326477	91303553	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_91303805_91304039_91304122_91306187_91306308_91309572_91309695_91311025_91311114_91312286_91312381_91312961_91313069_91314936_91316187_91318328_91318386_91318853_91318920_91326372
transcript_33651.known	chr15	-	2683	15	FSM	ENSMUSG00000001281.11	ENSMUST00000001327.11	2683	15	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_13	6.6719791758105	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGAGCCTCTACTTTACT	NA	False	NA	-1	True	AATAAA	-14	NA	102140379	102124429	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_102124703_102124906_102125068_102125326_102125533_102125681_102125902_102126208_102126433_102126931_102127126_102127608_102127756_102130523_102130614_102130776_102130873_102131075_102131235_102131765_102132008_102132736_102132908_102132992_102133195_102135832_102136037_102140285
transcript_33653.known	chr15	-	455	2	FSM	ENSMUSG00000001281.11	ENSMUST00000229440.2	455	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGAGCCTCTACTTTACT	NA	False	NA	-1	True	AATAAA	-14	NA	102125508	102124429	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_102124703_102125326
transcript_33656.known	chr15	-	2718	8	FSM	ENSMUSG00000001288.16	ENSMUST00000063339.14	2718	8	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_4	9.19183310979738	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCGGGTGTGGATCCCTC	NA	False	NA	-2	True	AATAAA	-14	NA	102154935	102143374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_102144659_102147239_102147399_102147824_102148030_102148292_102148470_102148562_102148724_102149492_102149635_102150270_102150420_102154494
transcript_33658.known	chr15	+	1754	2	FSM	ENSMUSG00000045665.6	ENSMUST00000051341.6	1754	2	0	0	0	0	multi-exon	FALSE	canonical	3	355	junction_1	0	327	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTCCTCTCCTGTACCCA	NA	False	NA	27	True	AATAAA	-23	NA	102187888	102190189	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102188065_102188611
transcript_33659.known	chr15	+	6658	31	FSM	ENSMUSG00000058290.5	ENSMUST00000064924.6	6658	31	0	0	0	0	multi-exon	TRUE	canonical	3	138	junction_1	58.1614706370692	190	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGTGAGAGTTGAAGCTA	359	False	NA	17	True	AATAAA	-17	NA	102204700	102232792	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102204851_102205194_102205285_102206618_102207675_102207853_102207959_102208237_102208350_102211046_102211184_102212386_102212581_102213360_102213601_102214099_102214245_102214332_102214472_102214669_102214810_102217632_102217768_102219034_102219155_102220849_102221022_102221370_102221500_102221617_102221775_102222421_102222532_102223622_102224612_102224953_102225327_102225484_102225647_102227846_102228061_102228137_102228329_102228847_102228976_102229078_102229202_102230759_102230916_102231010_102231182_102231302_102231408_102231589_102231706_102231884_102231969_102232077_102232243_102232442
transcript_3366.known	chr1	-	1335	4	FSM	ENSMUSG00000067071.9	ENSMUST00000086851.2	1335	4	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	18.4932420089069	635	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATGTGTCCAATGTGTG	NA	False	NA	-1	True	AATAAA	-35	NA	91340944	91339204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_91340205_91340442_91340525_91340614_91340702_91340778
transcript_33665.known	chr15	+	464	5	FSM	ENSMUSG00000001289.13	ENSMUST00000062492.11	464	5	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_1	382.106660502012	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGCAATGGCCTCCTGGGA	366	False	NA	-50	True	AATGAA	-42	NA	102234582	102239845	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102234696_102235252_102235285_102236956_102237032_102237146_102237253_102239707
transcript_33666.known	chr15	+	330	4	FSM	ENSMUSG00000001289.13	ENSMUST00000170627.8	330	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	413.913302784801	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTGCACTGCAGAAATGAA	407	False	NA	NA	False	NA	NA	NA	102234623	102239784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102234696_102236956_102237032_102237146_102237253_102239707
transcript_33668.known	chr15	+	570	5	FSM	ENSMUSG00000001289.13	ENSMUST00000001335.7	570	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	370.883741892254	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAATGGGGTGGTCTATTCT	407	False	NA	26	True	AATAAA	-14	NA	102234623	102239921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102234696_102234867_102234971_102236956_102237032_102237146_102237253_102239707
transcript_33669.known	chr15	+	830	4	FSM	ENSMUSG00000001289.13	ENSMUST00000165671.8	830	4	0	0	0	0	multi-exon	FALSE	canonical	3	877	junction_3	22.0655588845805	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTTAATAAATGTGACCGC	609	False	NA	2	True	NA	NA	NA	102234825	102239897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102235285_102236956_102237032_102237146_102237253_102239707
transcript_3367.known	chr1	-	1398	3	FSM	ENSMUSG00000067071.9	ENSMUST00000132188.8	1398	3	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	13.5	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATGTGTCCAATGTGTG	NA	False	NA	-1	True	AATAAA	-35	NA	91340930	91339204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_91340205_91340442_91340525_91340614
transcript_33670.known	chr15	+	1480	7	FSM	ENSMUSG00000001285.13	ENSMUST00000113682.9	1480	7	0	0	0	0	multi-exon	FALSE	canonical	3	485	junction_2	12.1620995994387	566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACCCTAGGAGTACATAAC	5927	False	NA	NA	False	AATAGA	-3	NA	102240143	102246574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102240389_102240524_102240638_102242636_102242797_102245266_102245420_102245535_102245659_102245763_102245946_102246070
transcript_33671.known	chr15	+	981	6	FSM	ENSMUSG00000001285.13	ENSMUST00000001331.13	981	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	200.273213386114	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGTATTCACCTCTAACTG	5968	False	NA	-1	True	NA	NA	NA	102240184	102246269	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102240389_102240524_102240638_102242636_102242797_102245535_102245659_102245763_102245946_102246070
transcript_33672.known	chr15	+	1319	6	FSM	ENSMUSG00000001285.13	ENSMUST00000170078.8	1319	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	204.652290483151	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACCCAGTCCCTGATCCA	5956	False	NA	16	True	AATAAA	-17	NA	102240172	102246286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102240638_102242616_102242797_102245266_102245420_102245535_102245659_102245763_102245946_102246070
transcript_33673.known	chr15	+	735	4	FSM	ENSMUSG00000001285.13	ENSMUST00000164961.8	735	4	0	0	0	0	multi-exon	FALSE	canonical	3	510	junction_2	3.2659863237109	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACCCAGTCCCTGATCCA	1713	False	NA	16	True	AATAAA	-17	NA	102245205	102246286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102245420_102245535_102245659_102245763_102245946_102246070
transcript_3368.known	chr1	+	3474	15	FSM	ENSMUSG00000034292.14	ENSMUST00000047242.9	3474	15	0	0	0	0	multi-exon	FALSE	canonical	2	37	junction_5	6.41943795619752	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTATGGACTGTCAAATTT	8984	False	NA	8	True	ATTAAA	-24	NA	91422415	91457029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_91422611_91425674_91425744_91427223_91427386_91428494_91428633_91428726_91429147_91433144_91433217_91435214_91435291_91446015_91446037_91447299_91447385_91447777_91447862_91448605_91448730_91448908_91448946_91450552_91450630_91453600_91453825_91455339
transcript_33681.known	chr15	-	1811	16	FSM	ENSMUSG00000036678.9	ENSMUST00000041208.9	1811	16	0	0	0	0	multi-exon	FALSE	canonical	3	447	junction_7	35.3844912669692	1385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGATGTAACTCCGAGTG	NA	False	NA	-5	True	AATAAA	-25	NA	102259194	102246686	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_102246941_102247075_102247161_102247251_102247334_102247620_102247689_102247759_102247854_102247965_102248057_102248198_102248260_102248378_102248504_102248765_102248887_102252523_102252668_102254011_102254111_102254921_102254969_102255112_102255205_102255470_102255527_102258387_102258516_102258930
transcript_33682.known	chr15	-	1814	15	FSM	ENSMUSG00000036678.9	ENSMUST00000229589.2	1814	15	0	0	0	0	multi-exon	FALSE	canonical	3	447	junction_6	35.0069963852709	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACCAGGATGTAACTCCG	NA	False	NA	-9	True	AATAAA	-21	NA	102259130	102246690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_102246941_102247075_102247161_102247251_102247334_102247620_102247854_102247965_102248057_102248198_102248260_102248378_102248504_102248765_102248887_102252523_102252668_102254011_102254111_102254921_102254969_102255112_102255205_102255470_102255527_102258387_102258516_102258930
transcript_33684.known	chr15	+	1938	11	FSM	ENSMUSG00000023047.12	ENSMUST00000023809.11	1938	11	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	59.5990771740637	561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCTTCATCAATGTGTT	NA	False	NA	13	True	AATAAA	-13	NA	102353801	102363065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102353958_102354239_102354423_102354698_102354891_102355142_102355215_102355434_102355548_102355665_102355897_102360583_102360699_102360821_102360995_102361179_102361328_102361466_102361604_102362647
transcript_3369.known	chr1	+	5826	5	FSM	ENSMUSG00000026311.17	ENSMUST00000027538.9	5826	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	8.86002257333467	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTCTGGCTCTCTAGCTC	8955	False	NA	7	True	AATAAA	-19	NA	91468435	91487311	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_91468587_91471872_91472020_91474649_91474953_91479775_91480162_91482472
transcript_33694.nic	chr15	+	1253	5	ISM	ENSMUSG00000023047.12	ENSMUST00000023809.11	1938	11	6520	0	-272	0	3prime_fragment	FALSE	canonical	3	32	junction_1	46.916814683011	617	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCTTCATCAATGTGTT	NA	False	NA	13	True	AATAAA	-13	NA	102360321	102363065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_+_102360699_102360821_102360995_102361179_102361328_102361466_102361604_102362647
transcript_33699.nic	chr15	+	700	2	ISM	ENSMUSG00000023047.12	ENSMUST00000162893.2	611	3	120	-86	-44	1	3prime_fragment	FALSE	canonical	3	16	junction_1	0	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTCTTCATCAATGTGTTT	NA	False	NA	14	True	AATAAA	-14	NA	102360713	102363066	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_+_102360995_102362647
transcript_33700.known	chr15	+	364	2	FSM	ENSMUSG00000023047.12	ENSMUST00000161376.2	364	2	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTCCGATTTGAGGCCT	NA	False	NA	NA	False	NA	NA	NA	102360757	102361306	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102360995_102361179
transcript_33702.known	chr15	+	1224	5	FSM	ENSMUSG00000023048.14	ENSMUST00000023810.12	1224	5	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	259.364969685576	1274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCTAGTTTTGTTACTC	2378	False	NA	40	True	AATAAA	-43	NA	102367609	102371241	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102367691_102367898_102368017_102368542_102368582_102368804_102369155_102370605
transcript_33709.known	chr15	+	1055	4	FSM	ENSMUSG00000023048.14	ENSMUST00000164957.8	1055	4	0	0	0	0	multi-exon	FALSE	canonical	3	427	junction_1	130.244215056008	1919	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCACCTGTGCCATTACC	2405	False	NA	16	True	AATAAA	-19	NA	102367636	102371217	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102367691_102368542_102368582_102368804_102369155_102370605
transcript_3371.nic	chr1	-	1161	6	ISM	ENSMUSG00000026313.17	ENSMUST00000189303.7	3287	23	51515	-201	20161	0	3prime_fragment	FALSE	canonical	3	104	junction_3	7.66811580507233	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-10	NA	91883062	91860478	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_91861109_91861377_91861520_91862323_91862409_91873621_91873756_91875139_91875259_91883011
transcript_33710.known	chr15	+	1020	3	FSM	ENSMUSG00000023048.14	ENSMUST00000164688.2	1020	3	0	0	0	0	multi-exon	FALSE	canonical	3	623	junction_2	60	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTTCTACTCACCTGTGCC	3286	False	NA	10	True	AATAAA	-13	NA	102368517	102371211	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102368582_102368804_102369155_102370605
transcript_33711.known	chr15	+	363	3	FSM	ENSMUSG00000023048.14	ENSMUST00000164938.8	363	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	371.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGGCATGTGCCCCGTG	2231	False	NA	NA	False	NA	NA	NA	102367462	102369023	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102367568_102368542_102368582_102368804
transcript_33712.known	chr15	+	1353	4	FSM	ENSMUSG00000023048.14	ENSMUST00000171245.8	1353	4	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_1	222.770933671538	556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACCTGTGCCATTACCTT	2435	False	NA	18	True	AATAAA	-21	NA	102367666	102371219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102368017_102368542_102368582_102368804_102369155_102370605
transcript_3373.known	chr1	-	8100	27	FSM	ENSMUSG00000026313.17	ENSMUST00000097644.9	8100	27	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_26	29.6698799314714	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCTACCTCCTTGTGT	6554	False	NA	0	True	AATAAA	-23	NA	92108063	91856500	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_91861109_91861377_91861520_91862323_91862409_91873621_91873756_91875139_91875259_91883011_91883110_91883763_91883884_91886076_91886165_91887132_91887189_91889174_91889283_91892501_91892549_91896074_91896181_91898664_91898799_91900421_91900609_91903160_91903416_91909750_91909975_91912099_91912296_91912382_91912500_91915266_91915380_91919204_91919337_91923778_91923901_91929876_91929998_91940390_91940542_91957676_91957919_91982622_91982695_92075977_92076217_92107979
transcript_33735.known	chr15	-	563	3	FSM	ENSMUSG00000023050.10	ENSMUST00000167677.2	563	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	4.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAAGTTCACATTGTCTT	NA	False	NA	NA	False	NA	NA	NA	102419227	102417546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_102417814_102418353_102418441_102419018
transcript_33736.known	chr15	+	1576	14	FSM	ENSMUSG00000056851.15	ENSMUST00000229618.2	1576	14	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	146.176678378513	5010	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGGAGCTTTTTCTTTG	2123	False	NA	5	True	ATTAAA	-5	NA	102379087	102407316	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
transcript_33737.known	chr15	+	516	5	FSM	ENSMUSG00000056851.15	ENSMUST00000229275.2	516	5	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	63.021325755652	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGGCTATATACCCTCAGT	2147	False	NA	12	True	AATAAA	-25	NA	102379111	102383199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009
transcript_33738.known	chr15	+	2571	13	FSM	ENSMUSG00000056851.15	ENSMUST00000108838.5	2571	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	188.317753780383	1541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAAGGAATAAGAGTGTCT	2255	False	NA	NA	False	NA	NA	NA	102379219	102408494	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102379239_102381719_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392588_102392676_102395522_102395565_102396639_102396713_102398186_102398243_102399068_102399239_102406923
transcript_33739.known	chr15	+	1499	14	FSM	ENSMUSG00000056851.15	ENSMUST00000229854.2	1499	14	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_11	165.819713890698	3618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGGAGCTTTTTCTTTG	2254	False	NA	5	True	ATTAAA	-5	NA	102379218	102407316	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102398186_102398243_102399068_102399239_102406923
transcript_33740.known	chr15	-	4318	16	FSM	ENSMUSG00000023050.10	ENSMUST00000171565.8	4318	16	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_14	18.4094178796253	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAAAAACAAAAACCAAA	NA	False	NA	NA	False	NA	NA	NA	102419135	102407210	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_102408612_102408942_102409205_102409286_102409358_102409535_102410161_102410268_102410407_102410500_102410618_102410749_102410860_102411071_102411181_102411923_102412083_102412159_102412319_102412549_102412742_102412904_102413089_102413524_102414004_102417724_102417833_102418353_102418441_102419018
transcript_33744.nic	chr15	+	1526	9	NIC	ENSMUSG00000023051.12	novel	782	8	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	3	98	junction_1	96.5083383703191	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTGTTCTTTTTTGTTA	NA	False	NA	NA	False	AATAAA	-27	NA	102427132	102432111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_+_102427280_102427556_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
transcript_33746.known	chr15	+	782	8	FSM	ENSMUSG00000023051.12	ENSMUST00000142194.3	782	8	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	99.7595067333107	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCCTTGCGGAATTCTGT	NA	False	NA	NA	False	NA	NA	NA	102427236	102431337	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102427280_102427556_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283
transcript_33750.known	chr15	+	1278	7	FSM	ENSMUSG00000023051.12	ENSMUST00000100168.10	1278	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	143.475510879809	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACCCTGCTCTCTCTGGC	NA	False	NA	NA	False	AATAAA	-19	NA	102426791	102432037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102427038_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
transcript_33763.known	chr15	-	2523	12	FSM	ENSMUSG00000099083.8	ENSMUST00000184485.8	2523	12	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_11	8.85605736578731	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAACACAAACAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	102533874	102442006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_102442874_102446617_102446727_102449174_102449373_102454839_102454993_102455588_102455703_102456207_102456308_102459838_102459997_102462218_102462357_102465894_102466014_102471748_102471846_102502106_102502176_102533473
transcript_33765.known	chr15	-	1457	12	FSM	ENSMUSG00000099083.8	ENSMUST00000184906.8	1457	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	15.8291498025344	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAGATGTGGATACATG	NA	False	NA	NA	False	AATAAA	-18	NA	102533508	102434380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_102434548_102446617_102446727_102449174_102449373_102454839_102454993_102455588_102455703_102456207_102456308_102459838_102459997_102462218_102462357_102465894_102466014_102471748_102471846_102502106_102502176_102533473
transcript_33766.known	chr15	-	7147	12	FSM	ENSMUSG00000099083.8	ENSMUST00000184616.8	7147	12	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_11	10.1696355688543	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTATGTTTGGTGCTTCC	NA	False	NA	-1	True	ATTAAA	-16	NA	102533885	102437070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_102442874_102446617_102446727_102449174_102449373_102454839_102454993_102455588_102455703_102456207_102456308_102459838_102459997_102462218_102462357_102465894_102466014_102471748_102471846_102502106_102502176_102533796
transcript_33768.known	chr15	+	151	1	FSM	ENSMUSG00000036305.8	ENSMUST00000146505.2	151	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	190	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTAAGGATTCACACAATG	NA	False	NA	NA	False	NA	NA	NA	102543472	102543623	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102543500_102543600
transcript_33773.known	chr15	-	731	5	FSM	ENSMUSG00000062683.12	ENSMUST00000185641.7	731	5	0	0	0	0	multi-exon	FALSE	canonical	3	3206	junction_4	667.870870752723	57190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTGAGTCTCCTGTG	3901	False	NA	-11	True	AATAAA	-17	NA	102579562	102571298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_102571564_102573488_102573683_102574197_102574291_102576145_102576215_102579452
transcript_33774.known	chr15	-	635	3	FSM	ENSMUSG00000062683.12	ENSMUST00000187160.2	635	3	0	0	0	0	multi-exon	FALSE	canonical	3	4743	junction_1	34	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCTTTAATTTTTTTTAAA	7285	False	NA	NA	False	NA	NA	NA	102576178	102573173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_102573683_102574197_102574291_102576145
transcript_33775.known	chr15	-	2824	15	FSM	ENSMUSG00000023055.11	ENSMUST00000023818.11	2824	15	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_14	14.2851785613836	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTGTCATGACGTATGTT	NA	False	NA	-6	True	AATATA	-19	NA	102630613	102615211	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_102615982_102616980_102617088_102617510_102617711_102617877_102617987_102618305_102618402_102618839_102618966_102619348_102619604_102619777_102619934_102622290_102622382_102624176_102624326_102624664_102624824_102626237_102626429_102627408_102627512_102627976_102628157_102630481
transcript_33778.nic	chr15	-	586	3	ISM	ENSMUSG00000023055.11	ENSMUST00000171838.2	2968	14	3	11168	3	-5942	5prime_fragment	FALSE	canonical	3	88	junction_2	20.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGGTTTGGGGGAAGGCG	NA	False	NA	NA	False	AAAAAG	-1	NA	102630563	102627187	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_102627512_102627976_102628157_102630481
transcript_33779.known	chr15	+	2461	2	FSM	ENSMUSG00000001655.7	ENSMUST00000001700.7	2461	2	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATTGCTTGGGATCCTT	NA	False	NA	17	True	AATAAA	-25	NA	102829537	102837249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102830353_102835603
transcript_33780.nnic	chr15	-	1152	2	Antisense	novelGene_ENSMUSG00000001655.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	6	junction_1	0	67	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTATTATTGATTTTTCC	NA	False	NA	0	True	NA	NA	NA	102840336	102835257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr15_-_102835785_102839711
transcript_33782.nnic	chr15	-	895	2	Antisense	novelGene_ENSMUSG00000001655.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	0	112	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGAGTTTGTGGGGTTTTTTT	NA	False	NA	NA	False	AATAAA	-39	NA	102840321	102837212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr15_-_102837498_102839711
transcript_33784.nnic	chr15	-	384	3	Antisense	novelGene_ENSMUSG00000050328.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	1	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACATATTAAAACGATTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	102845976	102843907	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr15_-_102844120_102844214_102844333_102845922
transcript_33788.known	chr15	+	1031	2	FSM	ENSMUSG00000050328.3	ENSMUST00000055562.3	1031	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTTCTGGCAGGCCCTTC	NA	False	NA	NA	False	NA	NA	NA	102845191	102847044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102845892_102846713
transcript_33789.nnic	chr15	+	688	2	NNC	ENSMUSG00000022484.8	novel	1909	2	NA	NA	-34916	-696	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_1	0	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGCAAAGACCTCAGACTC	NA	False	NA	NA	False	TATAAA	-28	NA	102840314	102879632	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_102840603_102879232
transcript_33790.nnic	chr15	+	1290	2	NNC	ENSMUSG00000022484.8	novel	1909	2	NA	NA	-34817	5	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_1	0	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGATGGGTTTTTTTTTTGT	NA	False	NA	NA	False	AATAAA	-24	NA	102840413	102880333	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_+_102840603_102879232
transcript_33791.known	chr15	+	1909	2	FSM	ENSMUSG00000022484.8	ENSMUST00000001699.8	1909	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAATGGATGGGTTTTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	102875230	102880328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102876044_102879232
transcript_33792.known	chr15	+	2923	2	FSM	ENSMUSG00000022485.4	ENSMUST00000001709.3	2923	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCCACTGTCTAAGCAATT	986	False	NA	NA	False	ATTAAA	-17	NA	102922246	102925861	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102922968_102923659
transcript_33795.known	chr15	+	1983	2	FSM	ENSMUSG00000075394.5	ENSMUST00000100164.5	1983	2	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	0	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCAATGTCTGATGGTTTC	5972	False	NA	30	True	AATAAA	-24	NA	102942820	102945278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_102943588_102944062
transcript_33797.known	chr15	-	3882	7	FSM	ENSMUSG00000036061.11	ENSMUST00000229371.2	3882	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	43.7607129740821	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGTTTTGCAAATTACT	NA	False	NA	-1	True	NA	NA	NA	103075519	103061716	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_103064629_103066043_103066346_103066583_103066655_103071698_103071865_103072962_103073139_103073227_103073391_103075427
transcript_33798.nic	chr15	-	517	3	ISM	ENSMUSG00000036061.11	ENSMUST00000229371.2	3882	7	3761	4243	-4	-1473	internal_fragment	FALSE	canonical	3	65	junction_2	7.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGGGGTGAGGTGAGGTA	NA	False	NA	NA	False	NA	NA	NA	103071758	103065959	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr15_-_103066346_103066583_103066655_103071698
transcript_33799.known	chr15	-	491	3	FSM	ENSMUSG00000036061.11	ENSMUST00000231198.2	491	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	46	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTTCCGGACCCTCTGC	NA	False	NA	NA	False	NA	NA	NA	103071745	103064486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_103064629_103066043_103066346_103071698
transcript_33800.nnic	chr15	-	541	3	NNC	ENSMUSG00000036061.11	novel	3882	7	NA	NA	-4	-1480	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	25	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTCTATAGGGGTGAGG	NA	False	NA	NA	False	NA	NA	NA	103071758	103065966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_103066346_103066552_103066655_103071698
transcript_33801.known	chr15	-	3752	2	FSM	ENSMUSG00000036061.11	ENSMUST00000229429.2	3752	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGGGTCTCTCCTCTCTT	NA	False	NA	NA	False	ATTAAA	-16	NA	103071754	103062649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_103066346_103071698
transcript_33804.known	chr15	-	1146	6	FSM	ENSMUSG00000009575.15	ENSMUST00000122182.2	1146	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_5	207.473757376686	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGCTGGCCTTTGTTTTG	NA	False	NA	-10	True	NA	NA	NA	103123732	103107681	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_103108219_103109227_103109329_103113918_103114106_103121498_103121682_103123448_103123549_103123694
transcript_3381.known	chr1	-	2020	10	FSM	ENSMUSG00000026260.13	ENSMUST00000027478.7	2020	10	0	0	0	0	multi-exon	FALSE	canonical	3	1166	junction_5	87.5025220095095	1098	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCCTGGTAGCACTGGGC	NA	False	NA	1	True	NA	NA	NA	92401582	92366731	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_92367630_92379732_92379842_92388101_92388188_92390012_92390068_92390799_92390880_92392082_92392205_92395102_92395190_92397584_92397801_92398538_92398708_92401384
transcript_33818.known	chr15	-	3661	5	FSM	ENSMUSG00000009575.15	ENSMUST00000108813.10	3661	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	189.635176061827	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAGAGGGCATTGAATCT	NA	False	NA	NA	False	NA	NA	NA	103123779	103105113	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_103108219_103109227_103109329_103113918_103114106_103121498_103121682_103123694
transcript_3382.known	chr1	-	1514	10	FSM	ENSMUSG00000026260.13	ENSMUST00000189503.7	1514	10	0	0	0	0	multi-exon	FALSE	canonical	2	32	junction_8	396.495325583892	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCTTATCTCTGAAGAGCA	NA	False	NA	NA	False	NA	NA	NA	92401479	92367000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_92367630_92379732_92379842_92388101_92388188_92390012_92390068_92390799_92390880_92392082_92392205_92395102_92395190_92397584_92397801_92398672_92398708_92401384
transcript_33833.known	chr15	-	8803	5	FSM	ENSMUSG00000009575.15	ENSMUST00000118152.8	8803	5	0	0	0	0	multi-exon	FALSE	canonical	3	412	junction_4	23.5902522241709	579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGAGTGGTAGTTTGAAG	NA	False	NA	0	True	AATAAA	-22	NA	103148243	103099970	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_103108219_103109227_103109329_103113918_103114106_103121498_103121682_103148159
transcript_33845.known	chr15	+	1737	10	FSM	ENSMUSG00000046434.17	ENSMUST00000087351.9	1737	10	0	0	0	0	multi-exon	FALSE	canonical	3	9291	junction_7	1545.88284736515	11576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGGAATGACAACTGTATG	NA	False	NA	-1	True	AATAAA	-17	NA	103148880	103153382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103152682
transcript_33846.known	chr15	+	1918	11	FSM	ENSMUSG00000046434.17	ENSMUST00000036004.16	1918	11	0	0	0	0	multi-exon	FALSE	canonical	3	2223	junction_7	4396.07925429012	4305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGGAATGACAACTGTATG	NA	False	NA	-1	True	AATAAA	-17	NA	103148858	103153382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103151348_103151508_103152051_103152208_103152385_103152456_103152682
transcript_33847.known	chr15	+	1283	11	FSM	ENSMUSG00000046434.17	ENSMUST00000230171.2	1283	11	0	0	0	0	multi-exon	FALSE	canonical	3	551	junction_9	4985.84843431888	2054	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGTTTCTTGTCTTCCT	NA	False	NA	13	True	AATAAA	-13	NA	103148858	103155119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103154772_103154849_103154971
transcript_33848.known	chr15	+	1541	9	FSM	ENSMUSG00000046434.17	ENSMUST00000231141.2	1541	9	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_7	4388.75483480224	1537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGGAATGACAACTGTATG	NA	False	NA	-1	True	AATAAA	-17	NA	103148920	103153382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152385_103152456_103152682
transcript_33849.known	chr15	-	784	3	FSM	ENSMUSG00000058794.13	ENSMUST00000154510.8	784	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	7	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTTACCCTTTCAGGCCT	6800	False	NA	NA	False	NA	NA	NA	103161237	103157665	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_103157876_103159355_103159526_103160833
transcript_33850.known	chr15	-	1697	3	FSM	ENSMUSG00000058794.13	ENSMUST00000075192.13	1697	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	8	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTATTGTGTCTTCTTTGA	4171	False	NA	NA	False	CATAAA	-20	NA	103163866	103156638	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_103157876_103159355_103159526_103163576
transcript_33851.known	chr15	+	1676	9	FSM	ENSMUSG00000060992.10	ENSMUST00000100162.5	1676	9	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_1	173.470458580128	4414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGTGTGATGGCTCTGT	NA	False	NA	32	True	AATAAA	-20	NA	103181336	103208295	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_103181369_103197527_103197597_103199101_103199184_103199755_103199848_103203148_103203205_103204959_103205038_103205160_103205213_103206313_103206353_103207119
transcript_33852.known	chr15	+	2438	8	FSM	ENSMUSG00000060992.10	ENSMUST00000230893.2	2438	8	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_1	184.876351397691	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGTGTGATGGCTC	NA	False	NA	29	True	AATAAA	-17	NA	103181338	103208292	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_103181369_103197527_103197597_103199101_103199184_103199755_103199848_103203148_103203205_103204959_103205038_103205160_103205213_103206313
transcript_33853.known	chr15	-	2298	8	FSM	ENSMUSG00000000552.11	ENSMUST00000168828.3	2298	8	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_6	68.2405708519799	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAAGGACTCAGACTGTCT	6919	False	NA	-12	True	AATAAA	-24	NA	103248520	103222321	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_103223653_103223787_103223884_103224053_103224224_103224308_103224552_103226375_103226539_103228716_103228828_103241491_103241629_103248473
transcript_33854.nnic	chr15	-	373	3	NNC	ENSMUSG00000000552.11	novel	2348	8	NA	NA	-54	-17083	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9.5	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAATGTGACTTTTTTTA	6865	False	NA	NA	False	NA	NA	NA	103248574	103239417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr15_-_103239553_103241491_103241629_103248473
transcript_33855.known	chr15	-	2221	7	FSM	ENSMUSG00000000552.11	ENSMUST00000229551.2	2221	7	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_6	27.1456974286698	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGCCCTCTCGCCAAGG	8816	False	NA	-25	True	AATAAA	-11	NA	103231937	103222334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_103223653_103223787_103223884_103224053_103224224_103224308_103224552_103226375_103226539_103228716_103228828_103231817
transcript_33856.known	chr15	-	4382	30	FSM	ENSMUSG00000000555.9	ENSMUST00000023128.8	4382	30	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_15	17.8822280065433	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCAGTCTGTCCTTCCAT	NA	False	NA	2	True	AATAAA	-28	NA	103275190	103252712	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_103253780_103254378_103254502_103255007_103255110_103256097_103256212_103256318_103256403_103258038_103258192_103258591_103258698_103258800_103258882_103259000_103259081_103259190_103259284_103259372_103259524_103259804_103259873_103259967_103260106_103260441_103260597_103260684_103260741_103260910_103261013_103261342_103261389_103261569_103261762_103262000_103262210_103262473_103262527_103262694_103262752_103264352_103264397_103264503_103264549_103264742_103264869_103265205_103265252_103265346_103265409_103265618_103265740_103265874_103265988_103267476_103267608_103274726
transcript_33859.known	chr15	-	700	10	FSM	ENSMUSG00000022487.15	ENSMUST00000141364.8	700	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_9	37.8499310957182	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTTTTTTCTCTTTATC	8453	False	NA	-55	True	NA	NA	NA	103338806	103310940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_103310986_103313235_103313270_103318050_103318146_103328384_103328449_103328899_103328984_103329616_103329744_103333857_103333959_103336766_103336812_103338603_103338685_103338782
transcript_33863.known	chr15	-	819	9	FSM	ENSMUSG00000022487.15	ENSMUST00000023129.15	819	9	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_8	17.7019596372831	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGCCAAATATTTATATAT	8362	False	NA	54	True	TTTAAA	-29	NA	103338897	103310831	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_103310986_103313235_103313270_103318050_103318146_103328384_103328449_103328899_103328984_103329616_103329744_103333857_103333959_103336766_103336812_103338782
transcript_33868.nnic	chr15	-	647	8	NIC	ENSMUSG00000022487.15	novel	819	9	NA	NA	18	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_6	42.4446818860521	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCAAGTACTTTTTTTTT	8380	False	NA	1	True	AGTAAA	-19	NA	103338879	103310884	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr15_-_103310986_103313235_103313270_103318050_103318146_103328384_103328449_103328899_103328984_103329616_103329744_103336766_103336812_103338782
transcript_33878.known	chr15	-	799	9	FSM	ENSMUSG00000022487.15	ENSMUST00000153930.8	799	9	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_8	29.634228520412	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTAAACTGTCTGTGACTT	8483	False	NA	-24	True	NA	NA	NA	103338776	103310909	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_103310986_103313235_103313270_103318050_103318146_103328384_103328449_103328899_103328984_103329616_103329744_103333857_103333959_103336766_103336812_103338603
transcript_33879.known	chr15	-	756	9	FSM	ENSMUSG00000022487.15	ENSMUST00000146675.8	756	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	40.4303026825177	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTAATTATAGAACAGTAAAC	8488	False	NA	-36	True	NA	NA	NA	103338771	103310921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_103310986_103313235_103313270_103318050_103318146_103328384_103328449_103328899_103328984_103329616_103329744_103333857_103333959_103336766_103336812_103338629
transcript_33880.known	chr15	+	3218	16	FSM	ENSMUSG00000022489.7	ENSMUST00000023132.5	3218	16	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	5.10163372525573	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTGTGGTGTTCAT	NA	False	NA	9	True	AATAAA	-15	NA	103411460	103438479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_103411800_103411887_103412011_103428375_103428490_103429732_103429916_103430079_103430147_103430471_103430589_103432734_103432876_103433224_103433326_103433416_103433543_103433662_103433765_103434689_103434811_103435033_103435116_103435410_103435520_103435971_103436103_103436648_103436772_103437240
transcript_33881.known	chr15	+	3258	15	FSM	ENSMUSG00000022489.7	ENSMUST00000227955.2	3258	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	6.01740672328781	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTGTGGTGTTCAT	NA	False	NA	9	True	AATAAA	-15	NA	103423346	103438479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_+_103423849_103428375_103428490_103429732_103429916_103430079_103430147_103430471_103430589_103432734_103432876_103433224_103433326_103433416_103433543_103433662_103433765_103434689_103434811_103435033_103435116_103435410_103435520_103435971_103436103_103436648_103436772_103437240
transcript_33887.known	chr15	-	1306	7	FSM	ENSMUSG00000022490.8	ENSMUST00000023133.8	1306	7	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_5	12.4688500761787	358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCTTTCACCCCCTTTTC	2052	False	NA	NA	False	ATTAAA	-21	NA	103446430	103438705	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_103439377_103439780_103439888_103440752_103440909_103441464_103441529_103441883_103441922_103442776_103442838_103446221
transcript_33888.known	chr15	-	821	6	FSM	ENSMUSG00000022490.8	ENSMUST00000228813.2	821	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	80.2331602269286	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGTCTGGAAGTAGGAGGT	2061	False	NA	NA	False	AATAGA	-7	NA	103446421	103439120	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr15_-_103439377_103439780_103439888_103440752_103440909_103441464_103441529_103441883_103441922_103446221
transcript_33892.known	chr16	+	3241	6	FSM	ENSMUSG00000022529.12	ENSMUST00000023176.5	3241	6	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	57.158026557956	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACATGAATATGTATAAAT	NA	False	NA	3	True	AATAAA	-12	NA	3561956	3568645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_3562632_3563640_3563822_3564285_3564360_3564634_3564759_3566012_3566130_3566575
transcript_33899.known	chr16	+	2350	7	FSM	ENSMUSG00000005982.15	ENSMUST00000186375.8	2350	7	0	0	0	0	multi-exon	FALSE	canonical	1	49	junction_5	41.1774614726713	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCTCTAGTTATTGGC	NA	False	NA	39	True	AATAAA	-20	NA	3702546	3722634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_3702671_3712232_3712349_3715114_3715245_3717735_3717833_3718506_3718742_3719646_3719990_3721329
transcript_33904.known	chr16	-	5668	3	FSM	ENSMUSG00000039789.8	ENSMUST00000090522.5	5668	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	9.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATATACTTCAAGAATTT	NA	False	NA	15	True	AATAAA	-33	NA	3690260	3679391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_3684595_3689013_3689141_3689922
transcript_33905.known	chr16	-	1842	3	FSM	ENSMUSG00000039789.8	ENSMUST00000119599.3	1842	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAGTGTGTGCCAATCAA	4390	False	NA	NA	False	NA	NA	NA	3702425	3683153	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_3684595_3689013_3689141_3702151
transcript_33906.known	chr16	-	2592	3	FSM	ENSMUSG00000005983.16	ENSMUST00000115859.8	2592	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCCTGGCACAGTGAGGG	NA	False	NA	NA	False	AATAAA	-12	NA	3726553	3722166	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_3724165_3724704_3725059_3726313
transcript_33908.known	chr16	+	5897	3	FSM	ENSMUSG00000054939.7	ENSMUST00000041778.8	5897	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	1	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGATGTTGGTAAGTACT	NA	False	NA	NA	False	AATAAA	-45	NA	3665131	3676744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_3666139_3667214_3667435_3672074
transcript_33909.known	chr16	+	1779	12	FSM	ENSMUSG00000014232.15	ENSMUST00000040881.14	1779	12	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_6	16.217019933921	1001	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGGCTGCTATTATTAT	3094	False	NA	7	True	AATACA	-17	NA	3726688	3759011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_3727018_3729314_3729427_3731148_3731234_3733286_3733467_3735689_3735786_3737344_3737429_3741703_3741838_3746353_3746496_3747703_3747777_3751570_3751679_3755422_3755479_3758631
transcript_33910.known	chr16	+	515	3	FSM	ENSMUSG00000014232.15	ENSMUST00000137745.2	515	3	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	17.5	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTGGCTCTTTCGGAGTC	3308	False	NA	NA	False	AATAAA	-14	NA	3726902	3731436	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_3727018_3729314_3729427_3731148
transcript_33911.known	chr16	+	876	5	FSM	ENSMUSG00000005982.15	ENSMUST00000176625.8	876	5	0	0	0	0	multi-exon	FALSE	canonical	1	18	junction_1	55.2285026050861	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCCCATCAGCCTGCCCCA	NA	False	NA	NA	False	NA	NA	NA	3702522	3719912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_3702671_3715114_3715245_3717735_3717833_3718506_3718742_3719646
transcript_33914.known	chr16	-	673	2	FSM	ENSMUSG00000039738.17	ENSMUST00000171658.2	673	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGCCACACTCAGAACC	NA	False	NA	NA	False	AAGAAA	-43	NA	3821616	3819064	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_3819543_3821421
transcript_33915.known	chr16	-	715	2	FSM	ENSMUSG00000039738.17	ENSMUST00000171762.2	715	2	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCCAGATCAGCCAGTGT	NA	False	NA	NA	False	NA	NA	NA	3821634	3818866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_3819543_3821595
transcript_33918.known	chr16	-	2320	18	FSM	ENSMUSG00000005981.12	ENSMUST00000006137.9	2320	18	0	0	0	0	multi-exon	TRUE	canonical	3	963	junction_15	112.803285922348	1314	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGACGTTTTCTCTGTTCT	NA	False	NA	-3	True	ATTAAA	-22	NA	3895691	3857834	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
transcript_33932.nnic	chr16	+	352	2	Antisense	novelGene_ENSMUSG00000022519.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGATGCCCCCATGACCT	NA	False	NA	NA	False	NA	NA	NA	4313940	4318301	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr16_+_4314108_4318116
transcript_33937.known	chr16	-	2247	7	FSM	ENSMUSG00000005718.9	ENSMUST00000005862.9	2247	7	0	0	0	0	multi-exon	TRUE	canonical	3	103	junction_5	11.6010057035299	213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTAGTTATTGAGGATG	NA	False	NA	0	True	AATAAA	-22	NA	4377718	4362524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_4363612_4365118_4365275_4367194_4367336_4369093_4369265_4369609_4369709_4369798_4369965_4377291
transcript_33949.known	chr16	-	431	5	FSM	ENSMUSG00000014301.14	ENSMUST00000156889.8	431	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	540.041433595609	532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTCCTGTTTGAGAAGGT	NA	False	NA	-15	True	AATAAA	-28	NA	4442800	4434327	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_4434498_4434676_4434743_4434989_4435014_4435782_4435868_4442714
transcript_33951.known	chr16	-	596	5	FSM	ENSMUSG00000014301.14	ENSMUST00000014445.7	596	5	0	0	0	0	multi-exon	FALSE	canonical	3	1132	junction_4	70.3491293478462	6397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTCCTGTTTGAGAAGGT	NA	False	NA	-15	True	AATAAA	-28	NA	4442852	4434327	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_4434498_4434676_4434743_4434989_4435127_4435782_4435868_4442714
transcript_33956.known	chr16	-	4296	28	FSM	ENSMUSG00000039637.16	ENSMUST00000038552.13	4296	28	0	0	0	0	multi-exon	TRUE	canonical	3	90	junction_15	10.2195380265448	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGAGCAGTGTCTCTCATC	NA	False	NA	NA	False	NA	NA	NA	4497641	4443996	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_4445364_4445473_4445561_4446047_4446140_4446539_4446676_4446919_4447037_4448051_4448142_4448227_4448370_4449312_4449399_4449674_4449780_4449850_4449994_4450082_4450170_4450276_4450386_4451118_4451295_4451577_4451702_4452162_4452295_4452452_4452546_4452625_4452772_4452848_4452907_4453247_4453303_4472873_4472957_4473411_4473499_4479728_4479780_4486607_4486685_4487721_4487906_4488365_4488437_4493626_4493702_4494799_4494897_4497415
transcript_33961.known	chr16	+	2648	12	FSM	ENSMUSG00000004069.18	ENSMUST00000060067.12	2648	12	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_10	248.960018695956	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGTCATTTCTTCTTTG	NA	False	NA	35	True	TTTAAA	-8	NA	4501933	4525559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_4502209_4505100_4505235_4507844_4507929_4511075_4511277_4512227_4512381_4514252_4514401_4515114_4515180_4517612_4517742_4519032_4519149_4520074_4520173_4523707_4523825_4524431
transcript_33966.known	chr16	+	2505	11	FSM	ENSMUSG00000004069.18	ENSMUST00000115854.4	2505	11	0	0	0	0	multi-exon	FALSE	canonical	3	681	junction_10	58.1896898084188	374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGTCATTTCTTCTTTG	NA	False	NA	35	True	TTTAAA	-8	NA	4501959	4525559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_4502209_4505100_4505235_4507844_4507929_4511075_4511277_4512227_4512381_4514252_4514401_4515114_4515180_4517612_4517742_4519032_4519149_4520074_4520173_4524431
transcript_33969.known	chr16	-	1150	10	FSM	ENSMUSG00000039637.16	ENSMUST00000090480.6	1150	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	36.6029749853448	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTGAAGAGAAATGCCTGC	NA	False	NA	NA	False	ACTAAA	-19	NA	4497641	4470426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_4470626_4472873_4472957_4473411_4473499_4479728_4479780_4486607_4486685_4487721_4487906_4488365_4488437_4493626_4493702_4494799_4494897_4497415
transcript_33974.nic	chr16	-	710	2	ISM	ENSMUSG00000039637.16	ENSMUST00000127850.2	610	3	9	989	9	-989	5prime_fragment	FALSE	canonical	3	114	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAAACCCCAAAAAC	NA	False	NA	NA	False	NA	NA	NA	4497597	4494368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_-_4494897_4497415
transcript_33975.known	chr16	+	2829	2	FSM	ENSMUSG00000039646.6	ENSMUST00000038770.4	2829	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGGCTTGAGATTTAAGG	NA	False	NA	NA	False	AATAAA	-28	NA	4457804	4468666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_4458013_4466045
transcript_33977.known	chr16	-	1306	5	FSM	ENSMUSG00000063445.15	ENSMUST00000115851.10	1306	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	76.6811580507233	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGTTTCCCAAAAGAAAAGG	4796	False	NA	-6	True	AATAAA	-18	NA	4537020	4529180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_4529545_4531503_4531695_4532280_4532531_4534160_4534400_4536758
transcript_33978.known	chr16	-	1459	6	FSM	ENSMUSG00000063445.15	ENSMUST00000079130.14	1459	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	91.0788669231233	772	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGTTTCCCAAAAGAAAAGG	4596	False	NA	-6	True	AATAAA	-18	NA	4537220	4529180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_4529468_4531503_4531695_4532280_4532531_4533464_4533495_4534160_4534400_4536758
transcript_33979.known	chr16	-	1155	5	FSM	ENSMUSG00000063445.15	ENSMUST00000074970.8	1155	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	77.9723508687535	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGCTTCCTTAATGGTT	4840	False	NA	NA	False	NA	NA	NA	4536976	4530158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_4530416_4531503_4531695_4532280_4532531_4534160_4534400_4536758
transcript_33987.known	chr16	+	1392	6	FSM	ENSMUSG00000004070.16	ENSMUST00000118885.8	1392	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	156.624391459313	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGCCTCTGCCTAACAGC	NA	False	NA	10	True	AATAAA	-11	NA	4574766	4584109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_4575035_4580422_4580542_4581592_4581711_4582469_4582962_4583626_4583754_4583841
transcript_33989.known	chr16	-	1964	6	FSM	ENSMUSG00000004071.14	ENSMUST00000117713.8	1964	6	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	194.363988434072	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGGCCTCTGCTGTCTTG	NA	False	NA	-19	True	ATTAAA	-21	NA	4607794	4585202	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_4586514_4586608_4586832_4587503_4587660_4587906_4588016_4588534_4588600_4607694
transcript_3399.known	chr1	-	989	1	FSM	ENSMUSG00000026260.13	ENSMUST00000189582.2	989	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAATCTATT	NA	False	NA	NA	False	NA	NA	NA	92401489	92400500	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_92400500_92401500
transcript_33990.known	chr16	-	3953	6	FSM	ENSMUSG00000004071.14	ENSMUST00000004173.12	3953	6	0	0	0	0	multi-exon	FALSE	canonical	3	434	junction_5	28.1240110937256	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGACTTTGGCTCTATACT	NA	False	NA	-3	True	TATAAA	-21	NA	4607854	4583324	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_4586514_4586608_4586883_4587503_4587660_4587906_4588016_4588534_4588600_4607694
transcript_33991.known	chr16	-	2554	6	FSM	ENSMUSG00000004071.14	ENSMUST00000118703.8	2554	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	186.698259231306	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTCTATTTTAGACCAT	NA	False	NA	-14	True	AATAAA	-14	NA	4608156	4584704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_4586514_4586608_4586883_4587503_4587660_4587906_4588016_4588534_4588600_4608015
transcript_34005.known	chr16	+	1730	6	FSM	ENSMUSG00000004070.16	ENSMUST00000004172.15	1730	6	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_2	14.4277510374971	1241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGACCTGTGATTTTTCCT	NA	False	NA	9	True	CATAAA	-17	NA	4544226	4584606	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_4544336_4580422_4580542_4581592_4581711_4582469_4582962_4583626_4583754_4583841
transcript_34007.nic	chr16	-	1548	4	NIC	ENSMUSG00000039568.7	novel	1851	3	NA	NA	24	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	161.605142932464	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCACCAGGCTCTGTAGT	NA	False	NA	-11	True	NA	NA	NA	4698155	4692651	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_-_4692962_4693230_4693734_4694225_4694286_4697480
transcript_34008.known	chr16	-	1851	3	FSM	ENSMUSG00000039568.7	ENSMUST00000037843.7	1851	3	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_1	8.5	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGTAGTCTTGCCTCAT	NA	False	NA	-1	True	NA	NA	NA	4698179	4692641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_4693734_4694225_4694286_4697480
transcript_34013.known	chr16	+	2250	17	FSM	ENSMUSG00000022517.18	ENSMUST00000229038.2	2250	17	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	129.828191757415	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCAGGCTGTCACTGCTGC	2943	False	NA	NA	False	NA	NA	NA	4704131	4755285	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_4704338_4725228_4725351_4728583_4728673_4729185_4729333_4731553_4731672_4733616_4733684_4733968_4734019_4736729_4736778_4738176_4738246_4740457_4740618_4742286_4742397_4745538_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4752058_4752104_4754759
transcript_34015.known	chr16	+	3095	16	FSM	ENSMUSG00000022517.18	ENSMUST00000023159.10	3095	16	0	0	0	0	multi-exon	TRUE	canonical	3	266	junction_15	54.4223810169636	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTATGTGTGCCTTTGTT	2924	False	NA	13	True	AATAAA	-14	NA	4704112	4756159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_4704338_4725231_4725351_4728583_4728673_4729185_4729333_4731553_4731672_4733616_4733684_4733968_4734019_4736729_4736778_4738176_4738246_4740457_4740618_4742286_4742397_4745538_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4754759
transcript_3402.known	chr1	-	649	3	FSM	ENSMUSG00000073616.11	ENSMUST00000148508.2	649	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	285.5	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGTGCTTTTAGATGCA	NA	False	NA	-19	True	AATAAA	-30	NA	92569645	92564866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_92565126_92567408_92567482_92569328
transcript_34020.known	chr16	+	1162	4	FSM	ENSMUSG00000022516.11	ENSMUST00000229961.2	1162	4	0	0	0	0	multi-exon	FALSE	canonical	1	32	junction_3	242.27670131484	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCCATGGCCACATCTTT	95	False	NA	25	True	AATAAA	-31	NA	4756975	4758896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_4757158_4757241_4757503_4758059_4758180_4758297
transcript_34023.known	chr16	+	1618	3	FSM	ENSMUSG00000022516.11	ENSMUST00000230931.2	1618	3	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_2	18	1615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTGCTTCTGAGTGCCA	NA	False	NA	12	True	AATAAA	-18	NA	4756624	4758883	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_4757158_4757241_4757503_4758059
transcript_34026.known	chr16	+	1329	3	FSM	ENSMUSG00000022516.11	ENSMUST00000050881.10	1329	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	274	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATGTTGCTTCTGAGTG	105	False	NA	9	True	AATAAA	-15	NA	4756985	4758880	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_4757158_4757241_4757578_4758059
transcript_34027.known	chr16	+	660	2	FSM	ENSMUSG00000022516.11	ENSMUST00000230224.2	660	2	0	0	0	0	multi-exon	FALSE	canonical	3	563	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAATTGAGACCAAAAAGAC	111	False	NA	NA	False	GGGGCT	-37	NA	4756991	4757735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_4757158_4757241
transcript_34028.known	chr16	-	1694	3	FSM	ENSMUSG00000097397.3	ENSMUST00000181498.3	1694	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTCTTGCCTGCATGTATC	NA	False	NA	NA	False	NA	NA	NA	4757497	4752912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_4754047_4756731_4757029_4757234
transcript_34029.known	chr16	-	2398	17	FSM	ENSMUSG00000022515.7	ENSMUST00000023157.6	2398	17	0	0	0	0	multi-exon	TRUE	canonical	3	59	junction_1	12.8608842522589	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGGGGGCTCATTTGT	8223	False	NA	-5	True	AATAAA	-13	NA	4782037	4759299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_4759662_4759762_4759852_4760074_4760159_4760556_4760643_4760942_4761116_4761422_4761565_4763918_4764044_4765128_4765297_4765512_4765623_4766089_4766228_4768476_4768633_4771682_4771819_4773721_4773804_4775504_4775627_4775831_4776031_4778260_4778433_4781983
transcript_3403.known	chr1	-	438	3	FSM	ENSMUSG00000073616.11	ENSMUST00000097642.4	438	3	0	0	0	0	multi-exon	FALSE	canonical	3	610	junction_1	1	8671	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGTGCTTTTAGATGCA	NA	False	NA	-19	True	AATAAA	-30	NA	92569707	92564866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_92565126_92567408_92567482_92569601
transcript_34035.nic	chr16	-	1213	7	ISM	ENSMUSG00000022515.7	ENSMUST00000229765.2	1779	11	-16	4599	-15	0	5prime_fragment	FALSE	canonical	3	74	junction_6	6.51707159867238	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTGAGGATTTTAGTGC	8176	False	NA	NA	False	AATAGA	-17	NA	4782084	4768231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_-_4768633_4771682_4771819_4773721_4773804_4775504_4775627_4775831_4776031_4778260_4778433_4781983
transcript_34037.known	chr16	-	1779	11	FSM	ENSMUSG00000022515.7	ENSMUST00000229765.2	1779	11	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_10	6.04069532421558	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTAATATGCCTTTTGT	8192	False	NA	NA	False	TATAAA	-22	NA	4782068	4763632	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_4764044_4765128_4765297_4765512_4765623_4766089_4766228_4768476_4768633_4771682_4771819_4773721_4773804_4775504_4775627_4775831_4776031_4778260_4778433_4781983
transcript_34040.known	chr16	+	382	4	FSM	ENSMUSG00000096215.9	ENSMUST00000184439.8	382	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	17.326921891156	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCCGAGTCTGGACTGT	NA	False	NA	8	True	NA	NA	NA	4825151	4826170	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_4825190_4825607_4825753_4825835_4825934_4826069
transcript_34041.known	chr16	+	399	4	FSM	ENSMUSG00000096215.9	ENSMUST00000185147.8	399	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	9.41629792788369	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGAGTCTGGACTGTGTT	NA	False	NA	11	True	NA	NA	NA	4825215	4826173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_4825283_4825607_4825753_4825835_4825919_4826069
transcript_34042.known	chr16	+	381	4	FSM	ENSMUSG00000096215.9	ENSMUST00000184256.7	381	4	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_1	18.2086670449969	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCCGAGTCTGGACTGT	NA	False	NA	8	True	NA	NA	NA	4825215	4826170	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_4825283_4825637_4825753_4825835_4825934_4826069
transcript_34044.known	chr16	+	247	3	FSM	ENSMUSG00000096215.9	ENSMUST00000183477.8	247	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	21.5	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGAGTCTGGACTGTGTT	NA	False	NA	11	True	NA	NA	NA	4825222	4826173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_4825283_4825835_4825919_4826069
transcript_34046.known	chr16	+	391	2	FSM	ENSMUSG00000096215.9	ENSMUST00000183631.2	391	2	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGAGTCTGGACTGTGTT	NA	False	NA	11	True	NA	NA	NA	4825631	4826173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_4825919_4826069
transcript_34047.known	chr16	-	1355	11	FSM	ENSMUSG00000022540.17	ENSMUST00000202281.4	1355	11	0	0	0	0	multi-exon	FALSE	canonical	3	412	junction_7	47.5572286829247	1672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTCTGTCTGTCTGTCT	NA	False	NA	-2	True	AATAAA	-18	NA	4831381	4826593	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_4827117_4827341_4827469_4827764_4827815_4827903_4828018_4828330_4828430_4828710_4828807_4829475_4829557_4830104_4830160_4830290_4830374_4831166_4831239_4831326
transcript_34048.known	chr16	-	1431	11	FSM	ENSMUSG00000022540.17	ENSMUST00000023191.17	1431	11	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	153.714052708267	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTCTGTCTGTCTGTCT	NA	False	NA	-2	True	AATAAA	-18	NA	4831391	4826593	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_4827117_4827341_4827469_4827764_4827815_4827903_4828018_4828330_4828430_4828710_4828807_4829475_4829623_4830104_4830160_4830290_4830374_4831166_4831239_4831326
transcript_3405.nnic	chr1	-	690	2	NNC	ENSMUSG00000097251.3	novel	1787	2	NA	NA	2329	1416	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTCGGCTCAGGATTGGC	1735	False	NA	NA	False	NA	NA	NA	92836157	92834683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_92835058_92835841
transcript_34050.known	chr16	-	3292	16	FSM	ENSMUSG00000022536.15	ENSMUST00000115844.3	3292	16	0	0	0	0	multi-exon	FALSE	canonical	3	744	junction_6	120.52477845747	1555	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATAACTGTATCATTGTA	8116	False	NA	-8	True	AATAAA	-13	NA	4867721	4831772	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
transcript_34057.known	chr16	-	3990	1	FSM	ENSMUSG00000022536.15	ENSMUST00000229928.2	3990	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGCATTTT	8116	False	NA	NA	False	TATAAA	-43	NA	4867721	4863731	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_4863700_4867700
transcript_34058.known	chr16	-	3222	8	FSM	ENSMUSG00000022536.15	ENSMUST00000231132.2	3222	8	0	0	0	0	multi-exon	FALSE	canonical	3	1044	junction_7	65.3951879899806	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8116	False	NA	NA	False	NA	NA	NA	4867721	4843716	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_4844472_4847197_4847272_4847366_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613
transcript_34059.known	chr16	-	2143	10	FSM	ENSMUSG00000023143.11	ENSMUST00000023911.11	2143	10	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	7.98764478027175	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCCACCAGGGGGCGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	5021876	5013152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_5013923_5015418_5015483_5015575_5015678_5016439_5016488_5016594_5016801_5017479_5017609_5017806_5017916_5019237_5019378_5021204_5021664_5021760
transcript_3406.known	chr1	+	1314	2	FSM	ENSMUSG00000047067.8	ENSMUST00000060913.8	1314	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCGAGTTGCTCTTTATG	2855	False	NA	NA	False	AATAAA	-14	NA	92834702	92836157	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_92835146_92835286
transcript_34063.known	chr16	-	1368	8	FSM	ENSMUSG00000051669.7	ENSMUST00000050160.6	1368	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	0.699854212223765	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGCTGAGTCTTTTGTCT	9722	False	NA	NA	False	CATAAA	-12	NA	5040163	5029686	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_5030077_5030455_5030537_5032466_5032572_5033840_5033977_5034605_5034724_5035661_5035813_5038159_5038310_5039926
transcript_34066.known	chr16	+	1755	13	FSM	ENSMUSG00000039427.15	ENSMUST00000100196.9	1755	13	0	0	0	0	multi-exon	TRUE	canonical	3	181	junction_11	10.4029910228848	744	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGGAAGTGTTTGCTCT	1280	False	NA	17	True	AATAAA	-18	NA	5051484	5062767	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_5051722_5052829_5052908_5053026_5053131_5054183_5054333_5056508_5056599_5056919_5057031_5057769_5057892_5058007_5058047_5058322_5058383_5059149_5059261_5060352_5060468_5061551_5061628_5062304
transcript_3407.known	chr1	-	1787	2	FSM	ENSMUSG00000097251.3	ENSMUST00000181575.3	1787	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACGGAGCCCAGGTTCTT	NA	False	NA	NA	False	ATTAAA	-29	NA	92838486	92836099	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_92837701_92838300
transcript_3408.known	chr1	+	2902	12	FSM	ENSMUSG00000026270.12	ENSMUST00000027488.11	2902	12	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_4	15.6743724089108	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATTAGTCTTGTTCCAAA	2260	False	NA	NA	False	AATAAA	-14	NA	92862097	92875663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_92862737_92865666_92865799_92867044_92867242_92868004_92868223_92870203_92870346_92871021_92871189_92871400_92871664_92872416_92872620_92872738_92873001_92874495_92874696_92874936_92874983_92875230
transcript_34080.known	chr16	+	1669	12	FSM	ENSMUSG00000039427.15	ENSMUST00000049207.9	1669	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	58.3112197360631	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTGCTCTGAGCCTGTG	1297	False	NA	26	True	AATAAA	-27	NA	5051501	5062776	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_5051722_5053026_5053131_5054183_5054333_5056508_5056599_5056919_5057031_5057769_5057892_5058007_5058047_5058322_5058383_5059149_5059261_5060352_5060468_5061551_5061628_5062304
transcript_34081.known	chr16	-	2170	8	FSM	ENSMUSG00000022544.15	ENSMUST00000064635.12	2170	8	0	0	0	0	multi-exon	FALSE	canonical	3	270	junction_1	73.3462573645565	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTGCGCATGTGCACAG	NA	False	NA	-2	True	NA	NA	NA	5073847	5062015	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_5063250_5065316_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
transcript_34082.known	chr16	-	1490	9	FSM	ENSMUSG00000022544.15	ENSMUST00000132225.8	1490	9	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_6	199.942491731998	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGACTGTCCTGTCAGAC	NA	False	NA	-5	True	AATAAA	-17	NA	5073805	5062742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_5063250_5065316_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5069036_5069082_5070844_5070952_5073704
transcript_34083.known	chr16	-	987	7	FSM	ENSMUSG00000022544.15	ENSMUST00000139584.2	987	7	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_1	22.2517165380311	587	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTTCTCTTTCTGTGG	NA	False	NA	-2	True	NA	NA	NA	5073820	5065238	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
transcript_3409.known	chr1	+	1268	4	FSM	ENSMUSG00000026270.12	ENSMUST00000117814.8	1268	4	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	7.1336448530109	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCCGGACCTGCTGTGGT	2650	False	NA	18	True	CATAAA	-18	NA	92862487	92868694	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_92862737_92865666_92865799_92867044_92867242_92868004
transcript_34092.known	chr16	-	3391	2	FSM	ENSMUSG00000043140.11	ENSMUST00000052505.10	3391	2	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	0	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCAGGGTTTTTTGGGTTT	NA	False	NA	NA	False	NA	NA	NA	8455576	8451092	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_8454257_8455349
transcript_34094.known	chr16	+	1842	9	FSM	ENSMUSG00000022711.17	ENSMUST00000023396.10	1842	9	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_5	22.2528088114737	553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGATTGTGGCCGAATCAT	NA	False	NA	17	True	AATAAA	-24	NA	8455537	8475395	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_8455693_8460601_8460714_8463232_8463310_8464036_8464129_8466511_8466612_8466745_8466822_8469273_8469390_8473414_8473553_8474419
transcript_34095.known	chr16	+	721	6	FSM	ENSMUSG00000022711.17	ENSMUST00000130885.8	721	6	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_5	21.3953265925061	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGAGGGAATCACGAACGA	NA	False	NA	NA	False	AATAAA	-17	NA	8455586	8466979	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_8455693_8460601_8460714_8463232_8463310_8464036_8464129_8466511_8466612_8466745
transcript_34096.known	chr16	-	2858	4	FSM	ENSMUSG00000008393.10	ENSMUST00000008537.10	2858	4	0	0	0	0	multi-exon	TRUE	canonical	3	300	junction_3	44.5146667465405	806	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGACTGTAAAAGGTTGTG	NA	False	NA	-11	True	AATAAA	-21	NA	8490019	8476443	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_8478968_8481450_8481574_8482118_8482287_8489976
transcript_34097.known	chr16	+	1796	9	FSM	ENSMUSG00000022711.17	ENSMUST00000230828.2	1796	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	59.023300483792	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATCTAGAAACTGGCTCTC	NA	False	NA	NA	False	NA	NA	NA	8455619	8480331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_8455693_8460601_8460714_8463232_8463310_8464036_8464129_8466511_8466612_8466745_8466822_8469273_8469390_8473414_8473553_8479319
transcript_34106.known	chr16	-	4745	32	FSM	ENSMUSG00000022710.18	ENSMUST00000160405.8	4745	32	0	0	0	0	multi-exon	FALSE	canonical	2	419	junction_31	128.599831855963	378	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGCTGTGGAAGCCGAG	NA	False	NA	NA	False	AATAAA	-26	NA	8610172	8507458	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_8508751_8509009_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510881_8510983_8511565_8511644_8511733_8511843_8512276_8512345_8512894_8513049_8513679_8513781_8514540_8514609_8514690_8514784_8515453_8515560_8515756_8515859_8516315_8516451_8516583_8516715_8517006_8517152_8517909_8518067_8519825_8519936_8521327_8521411_8522791_8522883_8522967_8523049_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529857_8530057_8534378_8534484_8574679_8574937_8610099
transcript_34107.known	chr16	+	4072	4	FSM	ENSMUSG00000022507.7	ENSMUST00000023150.7	4072	4	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_3	16.3299316185545	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACAGGGGCTTGTCTGTA	9944	False	NA	10	True	AATAAA	-21	NA	8647963	8676786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_8648550_8649184_8649266_8660831_8661108_8673657
transcript_34108.known	chr16	-	330	1	FSM	ENSMUSG00000068674.4	ENSMUST00000090395.4	330	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	386	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAACTAATGGAGAGTAAAT	NA	False	NA	NA	False	NA	NA	NA	8740253	8739923	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_8739900_8740300
transcript_34120.nnic	chr16	+	567	3	NNC	ENSMUSG00000116469.2	novel	673	3	NA	NA	52968	-262	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	3.5	43	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTTTTCCTTATGGTTCG	6077	False	NA	NA	False	CATAAA	-14	NA	8950976	8955046	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_8951217_8953545_8953645_8954818
transcript_34121.nnic	chr16	+	1193	3	NNC	ENSMUSG00000116469.2	novel	673	3	NA	NA	52968	364	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	3.5	37	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGGGATTCCTGTGTA	6077	False	NA	NA	False	AATAAA	-15	NA	8950976	8955672	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_8951217_8953545_8953645_8954818
transcript_34122.nnic	chr16	+	1768	3	NNC	ENSMUSG00000116469.2	novel	673	3	NA	NA	52968	939	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	3.5	58	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTAGTCTTCACTTCTCC	6077	False	NA	16	True	AATAAA	-26	NA	8950976	8956247	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_8951217_8953545_8953645_8954818
transcript_34123.nnic	chr16	-	559	2	Antisense	novelGene_ENSMUSG00000116469.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTTGTGGCCATAATTC	NA	False	NA	NA	False	AATAAA	-16	NA	8913284	8910474	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr16_-_8910793_8913043
transcript_3413.known	chr1	+	1088	3	FSM	ENSMUSG00000045091.5	ENSMUST00000059676.5	1088	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCTGTCTCCCTTGCCTGC	NA	False	NA	NA	False	AATAAA	-15	NA	92934055	92939991	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_92934732_92936282_92936400_92939696
transcript_3414.known	chr1	-	6141	49	FSM	ENSMUSG00000014602.16	ENSMUST00000190723.7	6141	49	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_22	3.61702907170451	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAACAAACCATGGCTCCT	NA	False	NA	NA	False	NA	NA	NA	93029673	92945661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_92946222_92946673_92946793_92947528_92947722_92948179_92948333_92948934_92949060_92949447_92949526_92950042_92950244_92950647_92950794_92951180_92951243_92952300_92952435_92953342_92953458_92964567_92964674_92966756_92966842_92966938_92967006_92967466_92967576_92968340_92968397_92969295_92969415_92969806_92969898_92970064_92970234_92970337_92970477_92971310_92971397_92974373_92974493_92979124_92979404_92980145_92980284_92981981_92982161_92982537_92982687_92983406_92983501_92983678_92983752_92983821_92984003_92986535_92986620_92987918_92988026_92988459_92988540_92990221_92990298_92990588_92990669_92991870_92992005_92993273_92993301_92993768_92993912_92994777_92994857_92996206_92996283_93000029_93000048_93000760_93000827_93001529_93001608_93002677_93002790_93003872_93004052_93004763_93004830_93005409_93005590_93006482_93006560_93010037_93010203_93029484
transcript_34144.nnic	chr16	+	1193	6	Intergenic	novelGene_50	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_4	13.6733317081098	43	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTATCTCCTTCGTAGGGC	NA	False	NA	NA	False	NA	NA	NA	8970603	9040750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr16_+_8970862_9010517_9010673_9032429_9032546_9036624_9036713_9038336_9038565_9040402
transcript_3415.known	chr1	-	1366	4	FSM	ENSMUSG00000026273.14	ENSMUST00000027492.14	1366	4	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	7.36357401145817	743	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTGGAGTCTTTTTCTCT	NA	False	NA	1	True	AATAAA	-39	NA	93233637	93228926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_93229518_93230439_93230625_93232329_93232829_93233546
transcript_3416.known	chr1	-	1525	3	FSM	ENSMUSG00000026273.14	ENSMUST00000112942.2	1525	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTATTCTACCATTTCT	NA	False	NA	NA	False	CATAAA	-21	NA	93233586	93229638	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_93230625_93232329_93232829_93233546
transcript_34162.nnic	chr16	+	1361	5	Intergenic	novelGene_49	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_4	14.9394611683287	47	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATCAGAACAAAGATTTTT	NA	False	NA	NA	False	AATAAA	-24	NA	8970603	9039080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr16_+_8970862_9010517_9010673_9032429_9032546_9036624_9036713_9038336
transcript_34163.nnic	chr16	+	1105	5	Intergenic	novelGene_51	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	26	junction_1	8.73212459828649	55	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTATCTCCTTCGTAGGGC	NA	False	NA	NA	False	NA	NA	NA	8970603	9040750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr16_+_8970862_9010517_9010673_9032429_9032546_9038336_9038565_9040402
transcript_34174.nnic	chr16	+	1267	4	Intergenic	novelGene_48	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	26	junction_1	9.80929264637478	52	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTATAATTATCAGAACAAAG	NA	False	NA	NA	False	AATAAA	-18	NA	8970603	9039074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr16_+_8970862_9010517_9010673_9032429_9032546_9038336
transcript_34186.known	chr16	+	550	3	FSM	ENSMUSG00000039209.13	ENSMUST00000121292.8	550	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	241	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTCTGTGTTACAACTT	NA	False	NA	29	True	AATAAA	-29	NA	9988089	9992494	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_9988189_9988278_9988356_9992120
transcript_34188.known	chr16	+	805	3	FSM	ENSMUSG00000039209.13	ENSMUST00000044103.6	805	3	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_1	5	5296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAATTGCTCTCTGGTCCT	NA	False	NA	68	True	NA	NA	NA	9988091	9992775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_9988189_9988278_9988356_9992144
transcript_34193.nnic	chr16	+	1077	9	NIC	ENSMUSG00000039200.17	novel	1230	10	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_1	34.0512022548397	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTCAGAAGCTACAAAAAT	NA	False	NA	NA	False	AATAAA	-17	NA	10010783	10058678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_+_10010890_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10058424
transcript_342.known	SIRV4	-	626	2	FSM	SIRV4A	SIRV405	626	2	0	0	0	0	multi-exon	FALSE	canonical	3	7498	junction_1	0	14032	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTCTCTTTTCAGCAAG	NA	False	NA	NA	False	NA	NA	NA	13937	8629	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV4_-_8991_13672
transcript_3420.known	chr1	+	885	3	FSM	ENSMUSG00000101172.2	ENSMUST00000188069.2	885	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTGCTTATTATGGGCA	6161	False	NA	NA	False	AATAAA	-15	NA	93233685	93245031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_93233830_93234264_93234347_93244372
transcript_34200.nnic	chr16	+	879	6	NNC	ENSMUSG00000039200.17	novel	1048	9	NA	NA	-2	-233	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_5	51.5829429172086	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTTTCGTGTTTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	10010783	10031862	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_10010890_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10031603
transcript_34206.known	chr16	+	1230	10	FSM	ENSMUSG00000039200.17	ENSMUST00000117220.8	1230	10	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	25.7557377042739	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTCAGAAGCTACAAAAAT	NA	False	NA	NA	False	AATAAA	-17	NA	10010785	10058678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10058424
transcript_34207.known	chr16	+	1048	9	FSM	ENSMUSG00000039200.17	ENSMUST00000119023.8	1048	9	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	24.2474225434375	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGAAATTACAGACTTGTT	NA	False	NA	NA	False	AGTAAA	-25	NA	10010769	10055152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029
transcript_34209.known	chr16	-	3440	5	FSM	ENSMUSG00000022505.10	ENSMUST00000078357.5	3440	5	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_1	14.2894191624432	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAATTGTATGGTGTTTGT	NA	False	NA	-5	True	ATTAAA	-31	NA	10131832	10099612	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_10102480_10103318_10103466_10105918_10106025_10110125_10110289_10131675
transcript_3421.known	chr1	+	10315	10	FSM	ENSMUSG00000026275.14	ENSMUST00000027494.11	10315	10	0	0	0	0	multi-exon	FALSE	canonical	3	496	junction_6	62.1028617061949	1491	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTGTTCGTCTGTGTTTC	NA	False	NA	NA	False	AATAAA	-22	NA	93270575	93301211	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_93271434_93273877_93274010_93278046_93278103_93278670_93278737_93279227_93279359_93280238_93280402_93282050_93282168_93285478_93285584_93288447_93288535_93292611
transcript_34217.nnic	chr16	-	352	4	Genic_Genomic	ENSMUSG00000022505.10	novel	5264	1	NA	NA	-8506	100420	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGGGGCAAGGGCTATT	NA	False	NA	NA	False	NA	NA	NA	10140338	9999192	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr16_-_9999296_10009053_10009138_10127361_10127505_10140316
transcript_3422.known	chr1	-	4427	28	FSM	ENSMUSG00000034088.16	ENSMUST00000042498.14	4427	28	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_27	104.811974833924	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTTGCCCTCTTCCTTTCC	NA	False	NA	NA	False	AATAAA	-27	NA	93373408	93335483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_93335982_93336090_93336220_93336410_93336528_93336672_93336859_93340084_93340229_93341212_93341348_93341548_93341654_93342533_93342689_93344222_93344362_93344893_93345113_93345189_93345412_93347790_93348010_93348805_93348938_93349064_93349152_93350985_93351100_93351491_93351597_93352988_93353129_93355279_93355359_93355869_93355975_93357099_93357208_93357819_93358027_93358676_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368515_93369907_93369973_93373301
transcript_34222.known	chr16	-	1803	7	FSM	ENSMUSG00000039179.14	ENSMUST00000043415.13	1803	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	2.40947204913349	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTTTAGGAAAATGTGAA	NA	False	NA	4	True	AATAAA	-22	NA	10213354	10175811	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_10176300_10179121_10179277_10196760_10196984_10200653_10200798_10203926_10203998_10205018_10205103_10212716
transcript_34223.nnic	chr16	-	705	3	NNC	ENSMUSG00000039179.14	novel	1803	7	NA	NA	24238	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	3	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTTTAGGAAAATGTGAA	NA	False	NA	4	True	AATAAA	-22	NA	10189074	10175811	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_10176300_10179121_10179277_10189012
transcript_34229.known	chr16	+	2121	11	FSM	ENSMUSG00000022503.11	ENSMUST00000023146.5	2121	11	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_1	76.2262422004391	1578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCTTTGTCATTCTTTC	NA	False	NA	NA	False	AAGAAA	-25	NA	10229811	10242292	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_10229860_10229933_10230039_10231474_10231609_10235524_10235594_10237516_10237550_10238119_10238211_10238837_10238993_10239090_10239202_10239440_10239544_10240685_10240770_10241104
transcript_3423.known	chr1	-	6231	28	FSM	ENSMUSG00000034088.16	ENSMUST00000170883.8	6231	28	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_27	59.547263104276	518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTGTGATGGGACTCAT	NA	False	NA	-10	True	AATAAA	-14	NA	93406523	93333661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_93335982_93336090_93336220_93336410_93336528_93336672_93336859_93340084_93340229_93341212_93341348_93341548_93341654_93342533_93342689_93344222_93344362_93344893_93345113_93345189_93345412_93347790_93348010_93348805_93348938_93349064_93349152_93350985_93351100_93351491_93351597_93352988_93353129_93355279_93355359_93355869_93355975_93357099_93357208_93357819_93358027_93358676_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368515_93369907_93369973_93406434
transcript_34237.known	chr16	+	679	6	FSM	ENSMUSG00000022503.11	ENSMUST00000129280.8	679	6	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_1	72.6151499344317	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGTTTTCAGTGTAGACA	NA	False	NA	NA	False	GATAAA	-17	NA	10229817	10238415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_10229860_10229933_10230039_10231474_10231609_10235524_10235594_10237516_10237550_10238119
transcript_34238.known	chr16	+	3296	9	FSM	ENSMUSG00000022503.11	ENSMUST00000142771.8	3296	9	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_1	84.8099898302081	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCTTTGTCATTCTTTC	NA	False	NA	NA	False	AAGAAA	-25	NA	10229833	10242292	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_10229860_10229933_10230039_10231474_10231609_10235524_10235594_10237516_10238993_10239090_10239202_10239440_10239544_10240685_10240770_10241104
transcript_34240.nic	chr16	+	812	4	ISM	ENSMUSG00000068663.15	ENSMUST00000038145.13	3730	21	-46	127078	-1	5205	5prime_fragment	FALSE	canonical	3	48	junction_3	11.9536140513607	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTGGTGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-17	NA	10363226	10386514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_+_10363507_10377884_10378014_10381000_10381135_10386245
transcript_34241.known	chr16	+	704	3	FSM	ENSMUSG00000068663.15	ENSMUST00000130148.2	704	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	9	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTGGGGATTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	10363240	10381309	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_10363507_10377884_10378014_10381000
transcript_34247.known	chr16	-	621	2	FSM	ENSMUSG00000038015.7	ENSMUST00000037996.7	621	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACTGACTGCTGTCTCCT	NA	False	NA	NA	False	AATAAA	-14	NA	10609969	10609243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_10609499_10609603
transcript_34248.known	chr16	+	333	1	FSM	ENSMUSG00000071671.6	ENSMUST00000096279.6	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACAAGAAAGTTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10619244	10619577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_10619200_10619600
transcript_34251.known	chr16	-	2235	4	FSM	ENSMUSG00000022500.16	ENSMUST00000023143.14	2235	4	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_3	22.4548930574657	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGTCCCCATTCATTCT	NA	False	NA	-11	True	AATAAA	-13	NA	10810985	10777138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_10778916_10781120_10781278_10784288_10784514_10810909
transcript_34256.nnic	chr16	-	438	3	NNC	ENSMUSG00000022500.16	novel	2235	4	NA	NA	-10	-7275	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	2	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTGTCAAGGAATTTTTA	NA	False	NA	NA	False	AATAAA	-15	NA	10810995	10791469	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_10791638_10793290_10793475_10810909
transcript_34257.known	chr16	+	2872	2	FSM	ENSMUSG00000037972.8	ENSMUST00000089011.6	2872	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACAGTCTTCACCTCTGG	NA	False	NA	17	True	AATAAA	-33	NA	10884193	10892849	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_10884312_10890095
transcript_34260.known	chr16	-	3825	23	FSM	ENSMUSG00000037965.16	ENSMUST00000037633.16	3825	23	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_12	24.8770530528646	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGGTGTGGTCCTTTCT	NA	False	NA	1	True	AATAAA	-28	NA	10994257	10954455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_10955350_10956884_10957049_10958580_10958715_10959526_10959636_10963043_10963150_10963509_10963644_10964230_10964308_10965132_10965315_10966308_10966410_10967074_10967272_10968458_10968621_10969002_10969190_10969729_10969795_10970922_10971128_10973883_10974165_10974391_10974426_10976417_10976457_10976546_10976628_10976829_10976989_10978867_10979066_10980503_10980544_10982455_10982558_10994083
transcript_34265.known	chr16	+	2481	4	FSM	ENSMUSG00000096959.2	ENSMUST00000181206.2	2481	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTGTTTGTCTGTCAAC	3695	False	NA	NA	False	NA	NA	NA	10996039	11010156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_10997377_10997498_10997636_10997996_10998193_11009345
transcript_34266.nnic	chr16	+	742	3	NIC	ENSMUSG00000096959.2	novel	2481	4	NA	NA	977	-625	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTCTTGGCTACATTC	4672	False	NA	NA	False	NA	NA	NA	10997016	11009531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_+_10997377_10997996_10998193_11009345
transcript_34275.known	chr16	-	1945	9	FSM	ENSMUSG00000005846.13	ENSMUST00000119953.2	1945	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	907.175424049836	5166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCTGTACTGTTGGTATT	954	False	NA	-3	True	ATTAAA	-25	NA	11021195	11010833	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_11011602_11012323_11012576_11014137_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
transcript_34276.known	chr16	-	764	6	FSM	ENSMUSG00000005846.13	ENSMUST00000124454.2	764	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1127.73284070297	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAAAAGCAGAGTGTGT	1021	False	NA	NA	False	NA	NA	NA	11021128	11014307	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
transcript_34278.known	chr16	+	517	3	FSM	ENSMUSG00000097537.3	ENSMUST00000230166.2	517	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAGTAAACAACAGAATGTA	NA	False	NA	NA	False	NA	NA	NA	11021558	11041479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_11021612_11025355_11025441_11041100
transcript_3428.nic	chr1	-	1220	7	ISM	ENSMUSG00000034088.16	ENSMUST00000170883.8	6231	28	-157	25016	-143	62	5prime_fragment	FALSE	canonical	3	431	junction_6	30.9914862861113	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACAGTGTGGAGGTGGCA	NA	False	NA	4	True	NA	NA	NA	93406680	93358677	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368515_93369907_93369973_93406434
transcript_34280.known	chr16	+	2942	2	FSM	ENSMUSG00000097537.3	ENSMUST00000181526.3	2942	2	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_1	0	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGGATTTGTTTGTTTTT	9699	False	NA	NA	False	AATAAA	-29	NA	11021229	11043660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_11021612_11041100
transcript_34283.known	chr16	+	2667	21	FSM	ENSMUSG00000071669.15	ENSMUST00000180792.8	2667	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	3.35261092284804	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTGCTGGGTCTCTGTCCT	NA	False	NA	NA	False	ATTAAA	-13	NA	11140771	11573336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_11140843_11165722_11165785_11167769_11167823_11185540_11185666_11213082_11213264_11217628_11217700_11218664_11218914_11221323_11221697_11231089_11231221_11236686_11236763_11238567_11238648_11263028_11263093_11265243_11265373_11328823_11328907_11389562_11389670_11449321_11449439_11473999_11474056_11478409_11478492_11532777_11532919_11556157_11556298_11573060
transcript_34286.known	chr16	-	2663	4	FSM	ENSMUSG00000065979.13	ENSMUST00000096272.11	2663	4	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_3	6.59966329107444	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAATAAAAAACAA	NA	False	NA	-40	True	NA	NA	NA	11727287	11621584	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_11623448_11646038_11646462_11705441_11705661_11727129
transcript_34290.known	chr16	-	1922	3	FSM	ENSMUSG00000065979.13	ENSMUST00000073371.7	1922	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	40	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTACATTGCTTCTTAAAT	NA	False	NA	NA	False	AATAAA	-13	NA	11727309	11702086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_11703610_11705441_11705661_11727129
transcript_34294.known	chr16	+	3480	11	FSM	ENSMUSG00000022545.14	ENSMUST00000023206.14	3480	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	21.466252583998	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGGTTTCTCAGTGTTT	NA	False	NA	11	True	AATAAA	-14	NA	12927547	12966598	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_12928006_12929594_12929776_12939859_12940056_12941197_12941406_12943114_12943296_12944258_12944388_12945418_12945530_12947997_12948599_12950721_12950815_12962264_12962378_12965389
transcript_34297.known	chr16	+	1118	4	FSM	ENSMUSG00000022545.14	ENSMUST00000138527.2	1118	4	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	5.31245915016974	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCCTGAATCTACTGTCTT	NA	False	NA	NA	False	TATAAA	-21	NA	12927780	12941713	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_12928006_12929594_12929776_12939859_12940056_12941197
transcript_34298.nnic	chr16	+	1437	3	NNC	ENSMUSG00000022545.14	novel	3480	11	NA	NA	7456	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	32	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGGTTTCTCAGTGTTT	NA	False	NA	11	True	AATAAA	-14	NA	12957710	12966598	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_12957826_12962264_12962378_12965389
transcript_34299.nnic	chr16	+	1433	3	NNC	ENSMUSG00000022545.14	novel	3480	11	NA	NA	11788	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	31.5	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGGTTTCTCAGTGTTT	NA	False	NA	11	True	AATAAA	-14	NA	12962042	12966598	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_12962154_12962264_12962378_12965389
transcript_343.known	SIRV4001	+	3997	1	FSM	SIRV4001A	SIRV4001	3997	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	3997	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV4001_+_0_4000
transcript_3430.known	chr1	-	2172	9	FSM	ENSMUSG00000034088.16	ENSMUST00000189951.7	2172	9	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_8	142.765049556956	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAATGAAAAAGAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	93373374	93356290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_93357208_93357819_93358027_93358676_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368515_93369907_93369973_93373301
transcript_34301.nic	chr16	+	1504	7	ISM	ENSMUSG00000009569.15	ENSMUST00000009713.14	5815	17	6	29883	6	-29883	5prime_fragment	FALSE	canonical	3	39	junction_6	10.2374584519575	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGTTGAGAGGAGGGTCT	NA	False	NA	NA	False	AATAAA	-24	NA	13074350	13203044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_+_13074419_13082942_13083004_13144245_13144436_13196127_13196194_13197703_13197760_13199391_13199468_13202057
transcript_34304.known	chr16	+	667	5	FSM	ENSMUSG00000009569.15	ENSMUST00000115809.8	667	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	24.5814971065637	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTATTTATGTGTATG	NA	False	NA	NA	False	AATAAA	-19	NA	13074369	13150786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_13074419_13082942_13083004_13144245_13144436_13149877_13149941_13150482
transcript_34307.nnic	chr16	+	602	4	NIC	ENSMUSG00000009569.15	novel	667	5	NA	NA	6	4	combination_of_known_splicesites	FALSE	canonical	3	4	junction_3	23.2139804619735	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTATGTGTATGAGTG	NA	False	NA	NA	False	AATAAA	-23	NA	13074375	13150790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_+_13074419_13082942_13083004_13144245_13144436_13150482
transcript_34310.known	chr16	-	2906	24	FSM	ENSMUSG00000022685.10	ENSMUST00000058884.10	2906	24	0	0	0	0	multi-exon	FALSE	canonical	1	121	junction_21	52.0035988284976	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCCTTTAACTGTTCTT	NA	False	NA	-7	True	ATTAAA	-16	NA	13486034	13355823	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_13356767_13358918_13359113_13384433_13384603_13420891_13420967_13424011_13424099_13425114_13425171_13443372_13443443_13443977_13444089_13446237_13446314_13447446_13447490_13449393_13449438_13458116_13458195_13465106_13465164_13466282_13466364_13468498_13468542_13469661_13469701_13470508_13470575_13472312_13472458_13474779_13474841_13482519_13482602_13482684_13482753_13483765_13483846_13485397_13485476_13485874
transcript_3432.known	chr1	+	3219	13	FSM	ENSMUSG00000116048.2	ENSMUST00000179353.8	3219	13	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	266.051999929838	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	AATAAA	-23	NA	93406714	93437455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_93406791_93416849_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
transcript_34322.nnic	chr16	-	1317	3	NNC	ENSMUSG00000022685.10	novel	2906	24	NA	NA	117811	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	188.5	217	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCCTTTAACTGTTCTT	NA	False	NA	-7	True	ATTAAA	-16	NA	13368035	13355823	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_13356767_13358918_13359113_13367855
transcript_34323.known	chr16	-	2274	7	FSM	ENSMUSG00000022685.10	ENSMUST00000229526.2	2274	7	0	0	0	0	multi-exon	FALSE	canonical	3	318	junction_3	29.5672491487156	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAAAAAAAACTTAAA	NA	False	NA	NA	False	NA	NA	NA	13486013	13469241	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_13469701_13470508_13470575_13472312_13472458_13474779_13474841_13482519_13483846_13485397_13485476_13485874
transcript_34327.known	chr16	+	3003	8	FSM	ENSMUSG00000022684.16	ENSMUST00000023365.13	3003	8	0	0	0	0	multi-exon	TRUE	canonical	3	82	junction_1	10.7760126660835	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTTATAGAGAAATCTGAT	NA	False	NA	NA	False	AATAAA	-24	NA	13489721	13521476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_13489943_13502925_13503263_13505254_13505460_13506619_13506790_13510296_13510442_13515196_13515371_13516736_13516940_13519928
transcript_34331.nic	chr16	+	1576	7	ISM	ENSMUSG00000022684.16	ENSMUST00000023365.13	3003	8	93	4323	1	0	5prime_fragment	FALSE	canonical	3	82	junction_1	11.6105794668292	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAGTGAATAAAAATA	NA	False	NA	NA	False	NA	NA	NA	13489814	13517153	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_+_13489943_13502925_13503263_13505254_13505460_13506619_13506790_13510296_13510442_13515196_13515371_13516736
transcript_34332.nic	chr16	+	1771	4	ISM	ENSMUSG00000022684.16	ENSMUST00000023365.13	3003	8	33	13816	33	1824	5prime_fragment	FALSE	canonical	3	82	junction_1	10.3708994574027	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAACAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13489754	13507660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_+_13489943_13502925_13503263_13505254_13505460_13506619
transcript_34335.known	chr16	+	1611	2	FSM	ENSMUSG00000079737.5	ENSMUST00000035426.7	1611	2	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	186	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGGTACTTTGGTATCT	NA	False	NA	NA	False	ATTAAA	-32	NA	13489883	13496249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_13489943_13494697
transcript_34336.known	chr16	+	2121	1	FSM	ENSMUSG00000022684.16	ENSMUST00000230905.2	2121	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAAAAAAAAAAACAC	NA	False	NA	NA	False	NA	NA	NA	13489850	13491971	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_13489800_13492000
transcript_3434.known	chr1	+	3192	12	FSM	ENSMUSG00000116048.2	ENSMUST00000172165.8	3192	12	0	0	0	0	multi-exon	FALSE	canonical	2	28	junction_1	279.729178354959	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	AATAAA	-23	NA	93406714	93437455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_93406791_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
transcript_34341.nic	chr16	-	1024	4	NIC	ENSMUSG00000022683.14	novel	1423	4	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	25.0199920063936	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCCTTGTGTAAGAGGTAA	NA	False	NA	-2	True	AATAAA	-18	NA	13548618	13532922	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_-_13533461_13542972_13543080_13545826_13545978_13548390
transcript_34343.nnic	chr16	-	813	3	NIC	ENSMUSG00000022683.14	novel	1423	4	NA	NA	-81	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_2	25	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCCTTGTGTAAGAGGTAA	NA	False	NA	-2	True	AATAAA	-18	NA	13548388	13532922	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_-_13533461_13542972_13543080_13548220
transcript_34344.known	chr16	-	498	3	FSM	ENSMUSG00000022683.14	ENSMUST00000127780.2	498	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	28.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCAATTTGTGCAGGAGAG	NA	False	NA	NA	False	NA	NA	NA	13548583	13533257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_13533461_13542972_13543080_13548395
transcript_34346.known	chr16	-	301	2	FSM	ENSMUSG00000115907.2	ENSMUST00000229709.2	301	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGCCATTAAAAATTTGAAC	NA	False	NA	NA	False	NA	NA	NA	13557068	13555715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_13555865_13556916
transcript_34347.known	chr16	-	1423	4	FSM	ENSMUSG00000022683.14	ENSMUST00000023364.7	1423	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	8.17856276425687	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCCTTGTGTAAGAGGTAA	NA	False	NA	-2	True	AATAAA	-18	NA	13548847	13532922	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_13533461_13542972_13543080_13545826_13545978_13548220
transcript_34348.known	chr16	-	964	4	FSM	ENSMUSG00000022683.14	ENSMUST00000115807.9	964	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	20.0720922897661	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTGTGTAAGAGGTAAAT	NA	False	NA	0	True	AATAAA	-20	NA	13548307	13532920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_13533461_13542893_13543080_13545826_13545978_13548220
transcript_34349.known	chr16	+	331	3	FSM	ENSMUSG00000086550.3	ENSMUST00000141172.3	331	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGACTAGTTGTCTTGGT	NA	False	NA	NA	False	NA	NA	NA	13547699	13557335	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_13547784_13555354_13555441_13557174
transcript_34351.known	chr16	+	3582	18	FSM	ENSMUSG00000022682.9	ENSMUST00000023363.8	3582	18	0	0	0	0	multi-exon	FALSE	canonical	3	873	junction_12	92.1558406284578	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTACTGTGTTGAATTTTA	NA	False	NA	27	True	AATAAA	-20	NA	13598576	13632703	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953
transcript_34354.known	chr16	+	969	2	FSM	ENSMUSG00000022682.9	ENSMUST00000230102.2	969	2	0	0	0	0	multi-exon	FALSE	canonical	3	1136	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATTAAAATAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13598571	13600693	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_13598704_13599856
transcript_34355.known	chr16	-	4228	24	FSM	ENSMUSG00000022680.15	ENSMUST00000023361.12	4228	24	0	0	0	0	multi-exon	TRUE	canonical	3	113	junction_1	25.0911382243075	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTCTTCTAGCTTCTACC	9988	False	NA	NA	False	NA	NA	NA	13720991	13651011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_13652711_13654249_13654480_13654906_13655012_13655959_13656057_13656165_13656259_13657095_13657218_13657500_13657620_13658150_13658323_13661634_13661741_13663198_13663288_13665589_13665654_13672258_13672310_13675240_13675367_13676720_13676823_13676973_13677023_13677817_13677903_13687666_13687746_13690318_13690388_13693841_13694032_13697289_13697437_13699741_13699823_13702429_13702496_13705560_13705635_13720778
transcript_34357.known	chr16	-	2880	23	FSM	ENSMUSG00000022680.15	ENSMUST00000115804.9	2880	23	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	45.2457020469238	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTGCTTTTGTTGCTGT	9804	False	NA	-17	True	NA	NA	NA	13720885	13652023	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_13652711_13654906_13655012_13655959_13656057_13656165_13656259_13657095_13657218_13657500_13657620_13658150_13658323_13661634_13661741_13663198_13663288_13665589_13665654_13672258_13672310_13675240_13675367_13676720_13676823_13676973_13677023_13677817_13677903_13687666_13687746_13690318_13690388_13693841_13694032_13697289_13697437_13699741_13699823_13702429_13702496_13705560_13705635_13720778
transcript_34358.known	chr16	-	3178	23	FSM	ENSMUSG00000022680.15	ENSMUST00000154150.8	3178	23	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_15	13.5268328374224	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGTAACTTTTGAATAA	9843	False	NA	NA	False	NA	NA	NA	13720846	13653455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_13654480_13654906_13655012_13655959_13656057_13656165_13656259_13657095_13657218_13657500_13657620_13658150_13658323_13661634_13661741_13663198_13663288_13665589_13665654_13672258_13672310_13675240_13675367_13676720_13676823_13676973_13677023_13677817_13677903_13687666_13687746_13690318_13690388_13693841_13694032_13697289_13697437_13699741_13699823_13702429_13702496_13705560_13705635_13720778
transcript_34368.known	chr16	+	1014	9	FSM	ENSMUSG00000022681.16	ENSMUST00000136618.8	1014	9	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	197.353743313878	546	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGTTTAGATGACTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	13637169	13653312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_13637301_13644923_13644990_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
transcript_34375.nic	chr16	+	982	8	NIC	ENSMUSG00000022681.16	novel	1175	10	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_1	230.175975270741	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTAGATGACTTTTTAC	NA	False	NA	NA	False	AATAAA	-23	NA	13637138	13653315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_+_13637301_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
transcript_3438.nic	chr1	+	1206	9	ISM	ENSMUSG00000026276.21	ENSMUST00000027495.15	3779	13	-27	8398	-27	1334	5prime_fragment	FALSE	canonical	3	766	junction_1	91.141030825858	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTCCCCTCTTGAATCG	NA	False	NA	NA	False	AATAAA	-16	NA	93406658	93429584	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_93406791_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228
transcript_34381.known	chr16	+	549	6	FSM	ENSMUSG00000022681.16	ENSMUST00000145248.8	549	6	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	263.800227444936	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGGGAGCCTATTTTT	NA	False	NA	NA	False	NA	NA	NA	13637140	13650298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_13637301_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200
transcript_34385.known	chr16	+	1175	10	FSM	ENSMUSG00000022681.16	ENSMUST00000023362.15	1175	10	0	0	0	0	multi-exon	FALSE	canonical	3	538	junction_1	69.8729004852541	2004	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTAGATGACTTTTTAC	NA	False	NA	NA	False	AATAAA	-23	NA	13637114	13653315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_13637301_13644746_13644850_13644923_13644990_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
transcript_34386.known	chr16	+	984	9	FSM	ENSMUSG00000022681.16	ENSMUST00000115805.3	984	9	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_8	226.530902969109	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGTTTAGATGACTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	13637188	13653312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_13637301_13644746_13644850_13644923_13644990_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652998
transcript_34388.known	chr16	+	2315	5	FSM	ENSMUSG00000022679.14	ENSMUST00000148966.2	2315	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	78.6431815226215	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGATTTGGGTATTGTCA	521	False	NA	9	True	NA	NA	NA	13758558	13766446	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_13758888_13759983_13760038_13762529_13762601_13764421_13764452_13764615
transcript_34391.known	chr16	+	3089	4	FSM	ENSMUSG00000022679.14	ENSMUST00000128757.8	3089	4	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	87.8179936004006	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	13721024	13767483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_13721145_13762529_13762601_13764421_13764452_13764615
transcript_34397.known	chr16	+	2155	4	FSM	ENSMUSG00000022679.14	ENSMUST00000141971.8	2155	4	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_1	85.9353762363841	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAAGATTGATGCTGATT	456	False	NA	NA	False	NA	NA	NA	13758493	13766587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_13758576_13762529_13762601_13764421_13764452_13764615
transcript_344.known	SIRV4002	+	3999	1	FSM	SIRV4002A	SIRV4002	3999	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	3999	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV4002_+_0_4000
transcript_34400.known	chr16	+	580	4	FSM	ENSMUSG00000022679.14	ENSMUST00000143697.8	580	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	74.5311269798659	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCTTCGCAGGAAGGAGG	528	False	NA	NA	False	NA	NA	NA	13758565	13764743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_13758888_13762529_13762601_13764392_13764452_13764615
transcript_34403.known	chr16	+	3087	4	FSM	ENSMUSG00000022679.14	ENSMUST00000023360.14	3087	4	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_1	20.3960780543711	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCAGAACTCTCAGCTCC	491	False	NA	NA	False	NA	NA	NA	13758528	13767242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_13758888_13762529_13762601_13764421_13764452_13764615
transcript_34407.known	chr16	+	2394	6	FSM	ENSMUSG00000044117.13	ENSMUST00000056521.12	2394	6	0	0	0	0	multi-exon	TRUE	canonical	3	47	junction_1	4.9152822909778	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAATTTTCAAGATATTTG	NA	False	NA	NA	False	NA	NA	NA	13804467	13919364	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_13804758_13867246_13867371_13906809_13906884_13911752_13911868_13913767_13913851_13917656
transcript_34411.known	chr16	-	853	3	FSM	ENSMUSG00000065968.9	ENSMUST00000117803.2	853	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAAAAATTGTCGTGGCT	NA	False	NA	NA	False	NA	NA	NA	13804719	13799565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_13799857_13801353_13801690_13804493
transcript_34412.known	chr16	-	553	2	FSM	ENSMUSG00000065968.9	ENSMUST00000230206.2	553	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAAATTGTCGTGGCTTCA	NA	False	NA	NA	False	NA	NA	NA	13804752	13799562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_13799857_13804493
transcript_34419.known	chr16	+	2335	9	FSM	ENSMUSG00000022678.17	ENSMUST00000115795.9	2335	9	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_8	91.5818452260054	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAAAAAGTGTTTTGTG	NA	False	NA	86	True	AATAAA	-8	NA	13981208	14010782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_13981233_13987315_13987440_13988201_13988356_13993154_13993304_14001339_14001477_14003557_14003738_14006176_14006269_14007950_14008097_14009453
transcript_3442.known	chr1	+	3267	13	FSM	ENSMUSG00000116048.2	ENSMUST00000168776.8	3267	13	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	258.994798317564	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	AATAAA	-23	NA	93406782	93437455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_93406903_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
transcript_34421.known	chr16	+	2287	9	FSM	ENSMUSG00000022678.17	ENSMUST00000023359.13	2287	9	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_8	30.8696857774743	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTTGTGCATTGTATAT	NA	False	NA	96	True	AATAAA	-18	NA	13981138	14010792	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_13981233_13987315_13987440_13988201_13988356_13993154_13993304_14001339_14001477_14003557_14003738_14006176_14006269_14007950_14008097_14009581
transcript_34424.known	chr16	+	1551	9	FSM	ENSMUSG00000022678.17	ENSMUST00000117958.8	1551	9	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_8	96.6681662958391	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAAATCCCTGCTCAAT	NA	False	NA	-4	True	AATAAA	-9	NA	13981150	14010692	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_13981233_13987315_13987440_13988201_13988356_13993154_13993304_14001339_14001477_14003557_14003738_14006176_14006269_14007950_14008097_14010205
transcript_34426.known	chr16	+	2105	8	FSM	ENSMUSG00000022678.17	ENSMUST00000132316.8	2105	8	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	103.03773828168	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAAAAAGTGTTTTGTG	NA	False	NA	86	True	AATAAA	-8	NA	13981161	14010782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_13981233_13987315_13987440_13988201_13988356_14001339_14001477_14003557_14003738_14006176_14006269_14007950_14008097_14009581
transcript_34430.known	chr16	-	7751	27	FSM	ENSMUSG00000060657.9	ENSMUST00000090300.6	7751	27	0	0	0	0	multi-exon	TRUE	canonical	2	10	junction_23	10.0957692234429	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTAATGAGTGCTTTTGT	9816	False	NA	-6	True	AATAAA	-16	NA	13977131	13927036	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_13929636_13932046_13932218_13933588_13933706_13933853_13933915_13935146_13935360_13938087_13938319_13943805_13944034_13944919_13945123_13946374_13946509_13946614_13946758_13947509_13947731_13949310_13949487_13950223_13950344_13950433_13950671_13954801_13954883_13956206_13956386_13958046_13958237_13959506_13959666_13959751_13959910_13960095_13960522_13963780_13963954_13964587_13964706_13966879_13967107_13969005_13969181_13969889_13970577_13971695_13971896_13977007
transcript_34431.known	chr16	-	6549	41	FSM	ENSMUSG00000018830.11	ENSMUST00000090287.5	6549	41	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.611861912526021	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGAAAGGAGTTGGCTCTT	832	False	NA	NA	False	AATAAA	-14	NA	14109236	14012398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_14013049_14018558_14018732_14018832_14018942_14019926_14020136_14020976_14021101_14022188_14022278_14022494_14022624_14022970_14023133_14023364_14023578_14023774_14023988_14025403_14025653_14025852_14026006_14026095_14026201_14027374_14027582_14029089_14029235_14030381_14030595_14033599_14033772_14035805_14035930_14036703_14036842_14037723_14037931_14038018_14038151_14039607_14039717_14041359_14041521_14041679_14041750_14041841_14041964_14044322_14044517_14046599_14046715_14048556_14048731_14050388_14050563_14051403_14051557_14052216_14052336_14054232_14054329_14057259_14057404_14062668_14062768_14063364_14063429_14064590_14064684_14068385_14068489_14074348_14074377_14086972_14087130_14095415_14095777_14109139
transcript_34440.known	chr16	-	1414	5	FSM	ENSMUSG00000022677.16	ENSMUST00000120707.2	1414	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	160.526282894733	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTATGGTCATGGTCT	NA	False	NA	-4	True	NA	NA	NA	14135211	14117107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_14118074_14122317_14122429_14128910_14128996_14131679_14131878_14135157
transcript_34442.known	chr16	-	1465	5	FSM	ENSMUSG00000022677.16	ENSMUST00000023357.14	1465	5	0	0	0	0	multi-exon	FALSE	canonical	3	293	junction_3	56.7384349449295	1267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTATGGTCATGGTCT	NA	False	NA	-4	True	NA	NA	NA	14135239	14117107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_14118074_14122317_14122452_14128910_14128996_14131679_14131878_14135157
transcript_34449.nnic	chr16	-	1393	4	NIC	ENSMUSG00000022677.16	novel	1465	5	NA	NA	-13	0	combination_of_known_splicesites	FALSE	canonical	3	20	junction_2	175.075856575244	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTATGGTCATGGTCT	NA	False	NA	-4	True	NA	NA	NA	14135252	14117107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_-_14118074_14122317_14122452_14131679_14131878_14135157
transcript_34453.nnic	chr16	-	1151	3	NNC	ENSMUSG00000022677.16	novel	1465	5	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	214.5	126	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTATGGTCATGGTCT	NA	False	NA	-4	True	NA	NA	NA	14135255	14117107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_14118074_14122317_14122405_14135157
transcript_34458.known	chr16	-	807	2	FSM	ENSMUSG00000022677.16	ENSMUST00000148278.2	807	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGGTCCAGCCCACAGTGG	NA	False	NA	NA	False	NA	NA	NA	14135196	14117305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_14118074_14135157
transcript_34461.known	chr16	-	1147	3	FSM	ENSMUSG00000022677.16	ENSMUST00000230495.2	1147	3	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	185.5	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTTGCTTATGGTCATG	NA	False	NA	-8	True	NA	NA	NA	14135208	14117111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_14118074_14122317_14122452_14135157
transcript_34462.known	chr16	+	6792	31	FSM	ENSMUSG00000023088.18	ENSMUST00000100167.10	6792	31	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_2	17.5139626837814	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATAGACTGAAGAGATGACT	7158	False	NA	NA	False	AAAAAG	-4	NA	14179423	14293601	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_14179508_14207670_14207848_14209181_14209308_14211816_14211955_14214214_14214341_14221853_14221916_14222877_14223010_14228563_14228798_14229312_14229491_14231084_14231247_14237563_14237657_14240920_14241125_14254370_14254518_14255509_14255598_14257850_14257924_14261211_14261339_14263156_14263334_14265341_14265510_14266263_14266448_14275751_14275834_14276860_14276994_14277620_14277832_14278761_14279073_14282906_14283107_14283967_14284095_14284860_14284963_14285686_14285834_14288333_14288493_14289801_14289969_14290674_14290870_14291323
transcript_34465.known	chr16	+	2021	3	FSM	ENSMUSG00000022676.8	ENSMUST00000023356.8	2021	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	2	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGTTACTCATATACTATT	NA	False	NA	NA	False	AATAAA	-17	NA	14523715	14527249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_14523917_14524574_14525124_14525978
transcript_34466.known	chr16	+	2752	6	FSM	ENSMUSG00000068617.6	ENSMUST00000090277.3	2752	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2.41660919471891	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGTGTGTCTTTTTAAC	NA	False	NA	NA	False	NA	NA	NA	14724500	14744001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_14724677_14734689_14734849_14735506_14735612_14738158_14738311_14738644_14738750_14741946
transcript_34469.known	chr16	-	609	5	FSM	ENSMUSG00000022674.16	ENSMUST00000096234.4	609	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	568.153808400507	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAATAAGTAAAAGAATTGCA	NA	False	NA	NA	False	ATTAAA	-24	NA	15412354	15374172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_15374408_15394878_15395005_15398922_15399072_15411554_15411623_15412323
transcript_3447.known	chr1	-	4249	12	FSM	ENSMUSG00000026277.15	ENSMUST00000027498.14	4249	12	0	0	0	0	multi-exon	TRUE	canonical	3	133	junction_7	20.1461601451751	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAAAGACAGCACTTACAA	NA	False	NA	NA	False	AATAAA	-13	NA	93563444	93547472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_93550249_93551117_93551255_93552274_93552347_93552755_93552871_93553182_93553329_93553502_93553689_93553772_93553931_93554746_93554856_93555375_93555433_93556755_93556987_93563019_93563106_93563268
transcript_34472.known	chr16	-	893	4	FSM	ENSMUSG00000022674.16	ENSMUST00000118236.8	893	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	50.6776303927307	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTGTTGGGGTTTTGAA	NA	False	NA	NA	False	NA	NA	NA	15412336	15373744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_15374408_15398922_15399072_15411554_15411623_15412323
transcript_34473.known	chr16	-	4207	4	FSM	ENSMUSG00000022674.16	ENSMUST00000115777.10	4207	4	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	627.165050046636	2937	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATTTTGTGTGTGCCTGTG	NA	False	NA	-4	True	AATAAA	-17	NA	15412388	15370540	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_15374408_15394878_15395005_15398922_15399072_15412323
transcript_34474.known	chr16	-	1236	3	FSM	ENSMUSG00000022674.16	ENSMUST00000115776.2	1236	3	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_1	698.5	701	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAGACTATCAAAGACTT	NA	False	NA	NA	False	AAGAAA	-4	NA	15412371	15373368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_15374408_15398922_15399072_15412323
transcript_34477.known	chr16	-	3589	16	FSM	ENSMUSG00000022673.6	ENSMUST00000023353.4	3589	16	0	0	0	0	multi-exon	TRUE	canonical	3	1276	junction_6	130.715909088714	520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGAAGTAGGCATTAATG	NA	False	NA	NA	False	AATAAA	-20	NA	15455264	15441760	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_15442634_15443425_15443560_15443899_15444129_15445512_15445721_15446456_15446585_15447165_15447532_15448124_15448385_15449562_15449684_15449980_15450202_15452302_15452442_15452912_15453009_15453093_15453190_15453856_15453959_15454049_15454214_15454484_15454647_15454974
transcript_34481.nic	chr16	-	776	5	ISM	ENSMUSG00000022673.6	ENSMUST00000023353.4	3589	16	-11	11382	-11	-3486	5prime_fragment	FALSE	canonical	3	1361	junction_4	87.4424810947173	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGGCATAGATATTACTC	NA	False	NA	NA	False	AAGAAA	-2	NA	15455275	15453142	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_-_15453190_15453856_15453959_15454049_15454214_15454484_15454647_15454974
transcript_34485.known	chr16	+	12647	86	FSM	ENSMUSG00000022672.9	ENSMUST00000023352.9	12647	86	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_36	18.5618353107608	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTCCTTGTTTCAAAGAA	3525	False	NA	20	True	AATAAA	-16	NA	15455752	15660099	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_15455907_15466583_15466661_15466751_15466845_15468514_15468590_15469295_15469405_15470102_15470216_15470314_15470415_15472545_15472602_15472684_15472716_15474119_15474278_15480846_15480994_15482071_15482237_15485452_15485622_15487145_15487196_15488376_15488503_15490120_15490274_15491832_15491946_15492302_15492463_15493143_15493231_15494767_15494888_15496066_15496227_15502000_15502108_15505222_15505314_15507135_15507297_15508125_15508276_15514986_15515095_15516660_15516888_15518506_15518602_15519918_15520019_15523034_15523169_15524587_15524843_15526574_15526796_15531443_15531653_15532011_15532145_15532779_15532939_15533729_15533931_15534869_15535056_15535594_15535700_15537208_15537377_15543196_15543325_15544365_15544574_15545447_15545627_15547702_15547872_15548303_15548370_15549413_15549487_15551844_15551994_15552763_15552902_15554616_15554737_15555683_15555825_15557295_15557448_15558062_15558195_15570599_15570712_15577348_15577474_15577565_15577716_15585731_15585906_15586414_15586514_15587657_15587866_15589887_15590078_15591462_15591679_15593720_15593834_15594892_15595025_15597241_15597422_15600920_15601127_15603773_15603913_15605008_15605198_15608313_15608539_15609736_15609846_15612891_15613004_15617730_15617918_15623785_15623961_15625897_15626092_15627459_15627656_15628568_15628715_15633755_15633968_15634434_15634523_15634614_15634759_15647479_15647685_15649134_15649203_15651539_15651761_15652010_15652104_15653015_15653106_15653753_15653826_15653895_15654098_15655826_15656016_15656948_15657089_15659634
transcript_34486.known	chr16	+	3063	22	FSM	ENSMUSG00000022672.9	ENSMUST00000182134.2	3063	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	20.5285046005253	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGCGTTGCAAACTAAAAAT	3502	False	NA	NA	False	AATAAA	-15	NA	15455729	15502613	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_15455907_15466583_15466661_15466751_15466845_15468514_15468590_15469295_15469405_15470102_15470216_15470314_15470415_15472545_15472602_15472684_15472716_15474119_15474278_15480846_15480994_15482071_15482237_15485452_15485622_15487145_15487196_15488376_15488503_15490120_15490274_15491832_15491946_15492302_15492463_15493143_15493242_15494767_15494888_15496066_15496227_15502000
transcript_34491.known	chr16	-	758	4	FSM	ENSMUSG00000022671.14	ENSMUST00000117136.2	758	4	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_3	237.265439727089	1105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGAGTTCTATGTGGAG	NA	False	NA	-11	True	ATTAAA	-13	NA	15681233	15666313	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_15666594_15680261_15680408_15680611_15680797_15681086
transcript_345.known	SIRV4003	+	4001	1	FSM	SIRV4003A	SIRV4003	4001	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	141	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	TATAAA	-45	NA	0	4001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV4003_+_0_4000
transcript_34503.known	chr16	-	1035	3	FSM	ENSMUSG00000022671.14	ENSMUST00000023351.11	1035	3	0	0	0	0	multi-exon	FALSE	canonical	3	566	junction_1	21	7032	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGTGGAGTCCTGGTTT	NA	False	NA	-2	True	ATTAAA	-22	NA	15681211	15666304	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_15666594_15680261_15680408_15680611
transcript_34504.known	chr16	-	1066	4	FSM	ENSMUSG00000022671.14	ENSMUST00000229680.2	1066	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	282.609664063744	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTCTATGTGGAGTCCT	NA	False	NA	-7	True	ATTAAA	-17	NA	15681174	15666309	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_15666594_15678561_15678635_15680261_15680408_15680611
transcript_34505.known	chr16	-	612	2	FSM	ENSMUSG00000022671.14	ENSMUST00000137864.2	612	2	0	0	0	0	multi-exon	FALSE	canonical	3	566	junction_1	0	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTATGTGGAGTCCTGGT	NA	False	NA	-4	True	ATTAAA	-20	NA	15680586	15666306	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_15666594_15680261
transcript_34507.known	chr16	-	3282	20	FSM	ENSMUSG00000041974.11	ENSMUST00000040248.9	3282	20	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_3	29.6569490345649	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGGTTTTAGTGTT	1947	False	NA	0	True	AATAAA	-18	NA	15964715	15707087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_15707650_15713006_15713061_15713389_15713505_15715087_15715182_15720772_15720920_15721920_15722126_15730382_15730443_15730532_15730674_15733163_15733252_15754416_15754558_15784465_15784717_15786391_15786582_15855353_15855574_15865867_15865969_15871129_15871381_15932690_15932846_15936670_15936848_15957869_15957937_15958571_15958728_15964608
transcript_34514.nnic	chr16	-	1643	9	NNC	ENSMUSG00000041974.11	novel	3282	20	NA	NA	2	-95342	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	102.374847374734	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGGCTAGATTCAATGTG	1949	False	NA	NA	False	AATAAA	-29	NA	15964713	15806590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_15807002_15855353_15855574_15865867_15865969_15871129_15871381_15932690_15932846_15936670_15936848_15957869_15957937_15958571_15958728_15964608
transcript_34521.known	chr16	+	2918	13	FSM	ENSMUSG00000041957.16	ENSMUST00000039408.3	2918	13	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_4	18.1995115929583	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTCTGTGACCTTCGATT	NA	False	NA	19	True	AATAAA	-19	NA	16031181	16090576	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_16031460_16043164_16043278_16043583_16044156_16048504_16048641_16058363_16058572_16064729_16064908_16078189_16078308_16079467_16079633_16080428_16080603_16085040_16085195_16086381_16086572_16087548_16087637_16090032
transcript_34522.nnic	chr16	+	1444	6	NNC	ENSMUSG00000022792.17	novel	1574	5	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	140.435892847947	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTCTTTACACAAGAACAA	9504	False	NA	16	True	AATAAA	-21	NA	16120826	16127496	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_16121186_16121322_16121612_16122399_16122568_16124326_16124483_16125073_16125245_16127195
transcript_34523.known	chr16	+	1574	5	FSM	ENSMUSG00000022792.17	ENSMUST00000059955.15	1574	5	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_2	32.9952648117878	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAAGAACAATCCTTGCT	9519	False	NA	24	True	AATAAA	-29	NA	16120841	16127504	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_16121612_16122399_16122568_16124326_16124483_16125073_16125245_16127195
transcript_34524.known	chr16	+	1528	5	FSM	ENSMUSG00000022792.17	ENSMUST00000159683.2	1528	5	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_2	137.095769446034	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTCTTTACACAAGAACAA	9522	False	NA	16	True	AATAAA	-21	NA	16120844	16127496	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_16121612_16122399_16122568_16124361_16124483_16125073_16125245_16127195
transcript_34527.known	chr16	+	1412	4	FSM	ENSMUSG00000022792.17	ENSMUST00000161191.8	1412	4	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_2	36.8088153692684	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACAGTAGAAAATACCTTG	9515	False	NA	NA	False	AATAAA	-17	NA	16120837	16125387	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_16121612_16122399_16122568_16124326_16124483_16125073
transcript_34530.nic	chr16	-	4114	20	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	-68	0	combination_of_known_junctions	FALSE	canonical	3	417	junction_5	244.836267297011	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATTGCCAGTAAGTGAATT	NA	False	NA	-23	True	AATAAA	-13	NA	16176891	16130109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
transcript_34534.nic	chr16	-	2661	20	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	-203	153	combination_of_known_junctions	FALSE	canonical	3	417	junction_5	244.836267297011	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACATGTTTAATTCACATT	NA	False	NA	-15	True	AAAACA	-3	NA	16177026	16131697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
transcript_34537.known	chr16	-	2151	19	FSM	ENSMUSG00000022789.16	ENSMUST00000230980.2	2151	19	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_17	350.006349148761	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAACTGTTTGATATCCA	NA	False	NA	NA	False	NA	NA	NA	16176729	16131850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163843_16164010_16176627
transcript_34538.nnic	chr16	-	4122	19	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	-109	0	combination_of_known_splicesites	FALSE	canonical	3	286	junction_4	248.941642474747	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATTGCCAGTAAGTGAATT	NA	False	NA	-23	True	AATAAA	-13	NA	16176932	16130109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
transcript_3454.known	chr1	-	2821	11	FSM	ENSMUSG00000026277.15	ENSMUST00000151068.8	2821	11	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_5	14.8354305633507	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGATGTACAGAGCCTGGC	NA	False	NA	-36	True	AATAAA	-19	NA	93563351	93549623	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_93550249_93551117_93551255_93552274_93552347_93552755_93552871_93553182_93553329_93553502_93553689_93553772_93554856_93555375_93555433_93556755_93556987_93563019_93563106_93563268
transcript_34544.known	chr16	-	3951	18	FSM	ENSMUSG00000022789.16	ENSMUST00000023477.15	3951	18	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_4	261.707977990631	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCTTTCTGATGTGCTTC	NA	False	NA	-7	True	AATAAA	-29	NA	16176823	16130093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
transcript_3455.known	chr1	+	1468	5	FSM	ENSMUSG00000026278.15	ENSMUST00000027499.13	1468	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	2.9474565306379	143	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGAGACTCTACTCTGCT	NA	False	NA	6	True	AATAAA	-16	NA	93613381	93623486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_93613577_93614139_93614392_93616878_93617008_93621781_93621946_93622758
transcript_34555.nic	chr16	-	397	2	ISM	ENSMUSG00000022789.16	ENSMUST00000230038.2	1074	6	-79	9532	-71	-9532	5prime_fragment	FALSE	canonical	3	1358	junction_1	0	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAACAGGAGAAGAAAATGGT	NA	False	NA	NA	False	GATAAA	-8	NA	16176894	16163879	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_-_16164010_16176627
transcript_34556.known	chr16	-	3893	20	FSM	ENSMUSG00000022789.16	ENSMUST00000115749.3	3893	20	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_19	330.475926430562	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAGTGAATTCTTTCTGA	NA	False	NA	-15	True	AATAAA	-21	NA	16176397	16130101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176362
transcript_34557.known	chr16	-	3966	19	FSM	ENSMUSG00000022789.16	ENSMUST00000096229.11	3966	19	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_16	431.23241420576	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAATTCTTTCTGATGTGC	NA	False	NA	-10	True	AATAAA	-26	NA	16176802	16130096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16160560_16160600_16163861_16164010_16176627
transcript_34558.nnic	chr16	-	1388	2	Genic_Genomic	ENSMUSG00000098037.2	novel	974	1	NA	NA	-1154	200	multi-exon	FALSE	canonical	3	9	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCCTCTTTAAATAATTTT	NA	False	NA	NA	False	AATAAA	-22	NA	16185175	16182847	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr16_-_16184073_16185012
transcript_34559.known	chr16	-	2416	11	FSM	ENSMUSG00000022783.12	ENSMUST00000023468.6	2416	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	2.24722050542442	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGAATGGTCCCTTTTGCT	NA	False	NA	NA	False	AATAAA	-16	NA	16647177	16570879	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_16571742_16580885_16581032_16584832_16584950_16595186_16595379_16598484_16598638_16599608_16599783_16601598_16601805_16605078_16605263_16610360_16610528_16646883_16646980_16647058
transcript_34567.known	chr16	-	375	1	FSM	ENSMUSG00000116648.2	ENSMUST00000231756.2	375	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	751	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCTGCTCATGTCAAATA	NA	False	NA	NA	False	NA	NA	NA	16637987	16637612	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_16637600_16638000
transcript_34568.known	chr16	-	870	3	FSM	ENSMUSG00000075370.13	ENSMUST00000100136.4	870	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGAGTCTTGTCGATCTC	NA	False	NA	NA	False	AATAAA	-16	NA	16681849	16678534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_16678999_16680292_16680409_16681559
transcript_34569.known	chr16	+	2950	19	FSM	ENSMUSG00000022779.17	ENSMUST00000232581.2	2950	19	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	102.489023802552	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGAGCCTGGGACCTTT	NA	False	NA	NA	False	ATTAAA	-27	NA	16688620	16710849	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_16688694_16692935_16693020_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
transcript_34572.nic	chr16	+	3006	18	NIC	ENSMUSG00000022779.17	novel	3073	18	NA	NA	-114	0	combination_of_known_junctions	TRUE	canonical	3	287	junction_1	39.4304608859032	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTGGGACCTTTTACTG	NA	False	NA	NA	False	ATTAAA	-32	NA	16688485	16710854	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_+_16688694_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
transcript_34575.known	chr16	+	3073	18	FSM	ENSMUSG00000022779.17	ENSMUST00000023465.16	3073	18	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	94.325542449951	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTGGGACCTTTTACTG	NA	False	NA	NA	False	ATTAAA	-32	NA	16688644	16710854	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_16688920_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
transcript_34581.known	chr16	-	406	3	FSM	ENSMUSG00000059305.13	ENSMUST00000231345.2	406	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCGCCTCTCCTGTACC	NA	False	NA	NA	False	NA	NA	NA	16688707	16686782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_16686843_16687136_16687327_16688551
transcript_34583.known	chr16	-	415	2	FSM	ENSMUSG00000059305.13	ENSMUST00000232670.2	415	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGAACTGCAGCCTGAGG	NA	False	NA	NA	False	NA	NA	NA	16688707	16686583	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_16686843_16688551
transcript_34584.known	chr16	-	766	2	FSM	ENSMUSG00000059305.13	ENSMUST00000075017.5	766	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTGGTCTGGCTGGTTTG	NA	False	NA	-1	True	ATTAAA	-14	NA	16687119	16686266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_16686843_16686929
transcript_34585.known	chr16	+	4922	8	FSM	ENSMUSG00000026181.14	ENSMUST00000027373.12	4922	8	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_7	6.62093155786084	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGAGTGCCACTTGGATCT	NA	False	NA	35	True	AATAAA	-17	NA	16714332	16745228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_16714489_16721187_16721456_16728802_16728946_16731897_16732101_16733023_16733213_16735523_16735668_16740326_16740421_16741503
transcript_34586.nnic	chr16	+	1104	7	NNC	ENSMUSG00000026181.14	novel	4922	8	NA	NA	-10	4577	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	33.9546265870598	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGTGTATGAGTGTTTA	NA	False	NA	NA	False	AATATA	-38	NA	16714427	16737635	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_16714489_16721187_16721456_16728802_16728946_16731897_16732101_16733023_16733213_16735523_16735668_16737539
transcript_34591.known	chr16	+	2390	9	FSM	ENSMUSG00000063358.18	ENSMUST00000232611.2	2390	9	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_8	172.340097989412	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCTGCTCTGTTGCCAA	NA	False	NA	NA	False	AATAAA	-23	NA	16801245	16862613	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_16801604_16833761_16833945_16836149_16836340_16841315_16841433_16843889_16844005_16844221_16844354_16853305_16853416_16856177_16856299_16861549
transcript_34592.known	chr16	+	1747	8	FSM	ENSMUSG00000063358.18	ENSMUST00000115731.10	1747	8	0	0	0	0	multi-exon	FALSE	canonical	3	566	junction_5	32.3728281124773	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAACATTTAAAAATA	NA	False	NA	NA	False	AATATA	-5	NA	16801430	16856904	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_16801604_16833761_16833945_16836149_16836340_16841315_16841433_16843889_16844005_16844221_16844354_16853305_16853416_16856177
transcript_34600.known	chr16	+	3322	5	FSM	ENSMUSG00000022773.20	ENSMUST00000035682.16	3322	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	19.0705925445435	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGTCTTTACTGTCTAAA	NA	False	NA	NA	False	NA	NA	NA	16887559	16904600	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_16888228_16895638_16895919_16899461_16899506_16899931_16900041_16902379
transcript_34601.known	chr16	-	2333	21	FSM	ENSMUSG00000022771.18	ENSMUST00000023455.14	2333	21	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_1	124.441592725262	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCGTTCATGACCTGGTA	NA	False	NA	NA	False	AATAAA	-19	NA	16929121	16904418	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_16905078_16906608_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
transcript_34602.known	chr16	-	3088	20	FSM	ENSMUSG00000022771.18	ENSMUST00000231712.2	3088	20	0	0	0	0	multi-exon	FALSE	canonical	3	631	junction_7	49.1072657119735	615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAAGAAAAAT	NA	False	NA	NA	False	AGTAAA	-40	NA	16929106	16905179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
transcript_34603.known	chr16	-	935	2	FSM	ENSMUSG00000022771.18	ENSMUST00000231536.2	935	2	0	0	0	0	multi-exon	FALSE	canonical	3	776	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTATGTGAATCCAGGT	NA	False	NA	NA	False	NA	NA	NA	16929096	16926713	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_16927559_16929006
transcript_34608.known	chr16	-	1156	7	FSM	ENSMUSG00000049916.13	ENSMUST00000231681.2	1156	7	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_4	26.8824602048746	1217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTGTTGTATGTCCTCTC	NA	False	NA	NA	False	AATAAA	-17	NA	16943004	16931262	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16938944_16939159_16939416_16942853
transcript_34609.known	chr16	-	1266	8	FSM	ENSMUSG00000049916.13	ENSMUST00000093336.8	1266	8	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_7	117.062516003464	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTTGTATGTCCTCTCT	NA	False	NA	NA	False	AATAAA	-18	NA	16942970	16931261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16938944_16939159_16939416_16941375_16941519_16942853
transcript_34610.known	chr16	-	1108	3	FSM	ENSMUSG00000022769.10	ENSMUST00000023453.10	1108	3	0	0	0	0	multi-exon	FALSE	canonical	2	125	junction_1	37.5	264	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGAGTGCATGAGATGTG	NA	False	NA	-10	True	AATAAA	-18	NA	16950247	16948001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_16948653_16949460_16949658_16949987
transcript_34612.known	chr16	+	354	1	FSM	ENSMUSG00000116694.2	ENSMUST00000231970.2	354	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACTAAGACAACTGAATAAA	NA	False	NA	NA	False	NA	NA	NA	16955191	16955545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_16955200_16955500
transcript_34615.known	chr16	+	1297	5	FSM	ENSMUSG00000041774.17	ENSMUST00000069064.7	1297	5	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_3	15.4171171105366	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGCTGGTTTATAAAGTG	NA	False	NA	12	True	AATAAA	-16	NA	16964842	16966710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_16965011_16965096_16965257_16965461_16965562_16965660_16965839_16966019
transcript_34616.known	chr16	+	1580	3	FSM	ENSMUSG00000041774.17	ENSMUST00000232344.2	1580	3	0	0	0	0	multi-exon	TRUE	canonical	3	101	junction_2	5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGCTGGTTTATAAAGTG	NA	False	NA	12	True	AATAAA	-16	NA	16964839	16966710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_16965011_16965096_16965257_16965461
transcript_34617.known	chr16	-	650	3	FSM	ENSMUSG00000038965.18	ENSMUST00000231643.2	650	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	1084	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAATTTACTCAAAGTTGC	NA	False	NA	50	True	NA	NA	NA	17019334	16971719	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_16972147_16977853_16978041_17019298
transcript_34618.known	chr16	-	454	2	FSM	ENSMUSG00000038965.18	ENSMUST00000232594.2	454	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGCTTGCTTTGTTTTA	NA	False	NA	-19	True	ATTAAA	-17	NA	16994371	16971788	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_16972147_16994275
transcript_34619.known	chr16	-	2609	4	FSM	ENSMUSG00000038965.18	ENSMUST00000090192.12	2609	4	0	0	0	0	multi-exon	FALSE	canonical	3	1494	junction_3	290.114153777823	7374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGGGTGTATGGGTTTCT	NA	False	NA	-1	True	AATAAA	-18	NA	17019356	16969878	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_16972147_16977853_16978041_16994275_16994372_17019298
transcript_34620.known	chr16	-	669	4	FSM	ENSMUSG00000041720.15	ENSMUST00000231917.2	669	4	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_2	11.5854314646552	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTTTTGTTTTGTTATG	NA	False	NA	-25	True	AATAAA	-14	NA	17099939	17098216	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_17098485_17098580_17098665_17098883_17098974_17099712
transcript_34633.known	chr16	+	6354	3	FSM	ENSMUSG00000050240.17	ENSMUST00000090190.14	6354	3	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	2.5	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGAGTCTGTGACTATAC	6311	False	NA	17	True	ATTAAA	-19	NA	17051435	17081294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_17051595_17072831_17072931_17075198
transcript_34635.known	chr16	+	1503	6	FSM	ENSMUSG00000055692.22	ENSMUST00000231322.2	1503	6	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_4	34.92506263416	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGTGTGGGGTTTCATC	NA	False	NA	38	True	AATAAA	-23	NA	17094540	17096525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17095835
transcript_34636.known	chr16	+	1627	8	FSM	ENSMUSG00000055692.22	ENSMUST00000232092.2	1627	8	0	0	0	0	multi-exon	TRUE	canonical	3	181	junction_2	39.2189042297154	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGTGTGGGGTTTCATC	NA	False	NA	38	True	AATAAA	-23	NA	17094172	17096525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_17094333_17094497_17094622_17094700_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17095835
transcript_34637.known	chr16	+	706	2	FSM	ENSMUSG00000055692.22	ENSMUST00000231334.2	706	2	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTCTCTTCTTTGGGATCA	NA	False	NA	11	True	AATAAA	-22	NA	17095464	17101093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_17095756_17100678
transcript_34638.known	chr16	+	781	7	FSM	ENSMUSG00000055692.22	ENSMUST00000232167.2	781	7	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_6	82.8231046669145	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTCTCTTCTTTGGGATCA	NA	False	NA	11	True	AATAAA	-22	NA	17094833	17101093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_17094904_17095057_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17100678
transcript_34639.known	chr16	+	825	4	FSM	ENSMUSG00000055692.22	ENSMUST00000232636.2	825	4	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_2	6.12825877028341	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGCCTAGAGTGCATCAT	NA	False	NA	NA	False	NA	NA	NA	17094958	17096030	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_17095115_17095205_17095457_17095532_17095756_17095835
transcript_34640.known	chr16	+	3447	5	FSM	ENSMUSG00000022765.11	ENSMUST00000023449.11	3447	5	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_2	7.59522876548166	261	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCTTGACTAAGCCCCT	1384	False	NA	NA	False	AGTAAA	-15	NA	17223849	17248691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_17224224_17237127_17237325_17240329_17240416_17244900_17245006_17246006
transcript_34641.known	chr16	+	5042	3	FSM	ENSMUSG00000006134.5	ENSMUST00000006293.5	5042	3	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_1	8	231	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCGGTGTTTCAGTGTCTC	3459	False	NA	20	True	AATAAA	-27	NA	17269850	17305298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_17270653_17286756_17287223_17301524
transcript_34643.known	chr16	+	2688	21	FSM	ENSMUSG00000022763.19	ENSMUST00000023448.15	2688	21	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_11	2.45916652547159	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTCCTAGTGTAATTGG	4248	False	NA	NA	False	ATTAAA	-19	NA	17307526	17325349	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_17307756_17309156_17309348_17309784_17309968_17317411_17317626_17317864_17317975_17318152_17318263_17318353_17318399_17318610_17318708_17318789_17318903_17319316_17319404_17319954_17320047_17320129_17320261_17320359_17320476_17320576_17320649_17320757_17320822_17321329_17321407_17321507_17321626_17322781_17322881_17323547_17323624_17324093_17324199_17324990
transcript_34646.known	chr16	+	3394	21	FSM	ENSMUSG00000022761.13	ENSMUST00000023444.11	3394	21	0	0	0	0	multi-exon	FALSE	canonical	2	77	junction_5	14.8690113995518	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGTCTCCGAGTCTTCT	NA	False	NA	32	True	NA	NA	NA	17326551	17344197	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_17327083_17327489_17327553_17329929_17329987_17333671_17333752_17333837_17333947_17335319_17335404_17336380_17336439_17337250_17337391_17338299_17338502_17338754_17338911_17339308_17339420_17340020_17340114_17340244_17340341_17340421_17340588_17340831_17341002_17341140_17341298_17341959_17342087_17342171_17342322_17343102_17343209_17343286_17343368_17343540
transcript_34649.known	chr16	+	906	3	FSM	ENSMUSG00000022761.13	ENSMUST00000231746.2	906	3	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	5	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTCTCTGTCAGGAGCCA	6147	False	NA	8	True	AATAAA	-21	NA	17342696	17343853	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_17343209_17343286_17343368_17343540
transcript_34652.known	chr16	-	1120	5	FSM	ENSMUSG00000022760.18	ENSMUST00000232114.2	1120	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	44.5329933869261	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGGACTACATGCCCAGGC	7210	False	NA	-107	True	NA	NA	NA	17348976	17346049	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_17346605_17346798_17346940_17348093_17348250_17348541_17348722_17348888
transcript_34656.known	chr16	-	1110	5	FSM	ENSMUSG00000022760.18	ENSMUST00000231548.2	1110	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	41.2757495389242	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTTTGGCTTGGCTGG	7275	False	NA	1	True	AATAAA	-19	NA	17348911	17345941	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_17346605_17346798_17346940_17348093_17348250_17348641_17348722_17348841
transcript_34657.known	chr16	-	1248	5	FSM	ENSMUSG00000022760.18	ENSMUST00000100125.12	1248	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_4	27.8118679703468	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAAATCTCTGTTTGCAGT	7186	False	NA	97	True	NA	NA	NA	17349000	17345845	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_17346605_17346798_17346940_17348093_17348250_17348641_17348722_17348888
transcript_34659.known	chr16	-	734	4	FSM	ENSMUSG00000022760.18	ENSMUST00000231288.2	734	4	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_3	13.0724477007517	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCCCTCTAGGTGCTCAGG	7267	False	NA	NA	False	NA	NA	NA	17348919	17346445	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_17346605_17346798_17346940_17348093_17348250_17348641
transcript_3466.known	chr1	+	4173	13	FSM	ENSMUSG00000026280.18	ENSMUST00000027502.16	4173	13	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_10	29.445217495093	782	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTGCTTCTTGAGTTCTG	NA	False	NA	NA	False	NA	NA	NA	93682626	93718332	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_93682777_93695774_93695877_93695974_93696047_93701491_93701591_93702854_93702957_93703349_93703423_93706006_93706087_93708439_93708634_93712133_93712213_93712474_93712621_93713631_93713689_93714232_93714327_93715407
transcript_34664.nnic	chr16	-	1093	3	NIC	ENSMUSG00000022760.18	novel	1110	5	NA	NA	-11	0	intron_retention	FALSE	canonical	3	9	junction_2	46	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTTTGGCTTGGCTGG	7256	False	NA	1	True	AATAAA	-19	NA	17348930	17345941	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_-_17346605_17346798_17346940_17348641
transcript_34668.known	chr16	-	849	2	FSM	ENSMUSG00000022760.18	ENSMUST00000231676.2	849	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCCTGCAAGCGGCGGGA	7641	False	NA	NA	False	NA	NA	NA	17348545	17346207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_17346605_17348093
transcript_34669.known	chr16	-	766	2	FSM	ENSMUSG00000022760.18	ENSMUST00000232041.2	766	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGACTCTGAAGGACCAT	7270	False	NA	NA	False	NA	NA	NA	17348916	17346113	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_17346605_17348641
transcript_34672.known	chr16	+	337	1	FSM	ENSMUSG00000116898.2	ENSMUST00000231565.2	337	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAGAACATTTTCTTTTAA	NA	False	NA	NA	False	AATAAA	-15	NA	17349045	17349382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_17349000_17349400
transcript_34674.known	chr16	-	1711	6	FSM	ENSMUSG00000022756.18	ENSMUST00000231615.2	1711	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_4	6.22896460095897	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACACTGTGGTATTCTTC	NA	False	NA	NA	False	NA	NA	NA	17394562	17390813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_17391317_17391419_17391529_17391809_17392451_17392815_17392866_17393480_17393830_17394503
transcript_34676.known	chr16	-	3281	5	FSM	ENSMUSG00000022756.18	ENSMUST00000172164.10	3281	5	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_4	5.33853912601566	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTGGCTTTGGCAAGCT	NA	False	NA	NA	False	NA	NA	NA	17394585	17389881	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_17391317_17391419_17391529_17391809_17392451_17392815_17393830_17394503
transcript_34677.known	chr16	-	2577	4	FSM	ENSMUSG00000022756.18	ENSMUST00000232429.2	2577	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	6.59966329107444	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTCATGTACACTGTGGTA	NA	False	NA	NA	False	NA	NA	NA	17394535	17390819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_17391317_17391419_17392451_17392815_17393833_17394503
transcript_34678.known	chr16	+	698	6	FSM	ENSMUSG00000041617.11	ENSMUST00000183279.2	698	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	3.2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTAAGCTTCCTTCTTCA	NA	False	NA	NA	False	AATAAA	-14	NA	17464563	17468602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_17464648_17465471_17465517_17465930_17465991_17467858_17467939_17468012_17468070_17468230
transcript_34679.known	chr16	+	409	5	FSM	ENSMUSG00000041617.11	ENSMUST00000182344.8	409	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	3.26917420765551	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGGCAGAAAAGGCTGCAAG	NA	False	NA	NA	False	NA	NA	NA	17464481	17468311	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_17464648_17465471_17465517_17465930_17465991_17468012_17468070_17468230
transcript_34680.known	chr16	+	1040	4	FSM	ENSMUSG00000041617.11	ENSMUST00000182822.8	1040	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	1.88561808316413	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTCCTGGGCTGGGCTGG	NA	False	NA	NA	False	AAAACA	-19	NA	17464333	17467279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_17464648_17465471_17465517_17465930_17465991_17466658
transcript_34681.known	chr16	+	648	4	FSM	ENSMUSG00000041617.11	ENSMUST00000182671.8	648	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	3.2659863237109	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTAAGCTTCCTTCTTCA	NA	False	NA	NA	False	AATAAA	-14	NA	17464476	17468602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_17464648_17465471_17465517_17465930_17465991_17468230
transcript_34686.known	chr16	-	1189	4	FSM	ENSMUSG00000012114.18	ENSMUST00000232667.2	1189	4	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_3	17.4419672692682	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAATCGCA	NA	False	NA	NA	False	NA	NA	NA	17540754	17500138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_17501053_17503316_17503369_17515470_17515559_17540619
transcript_34687.known	chr16	-	467	2	FSM	ENSMUSG00000012114.18	ENSMUST00000231494.2	467	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCTACATCTGGATCCT	NA	False	NA	NA	False	NA	NA	NA	17540760	17520493	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_17520820_17540619
transcript_34688.known	chr16	+	438	1	FSM	ENSMUSG00000059150.4	ENSMUST00000170279.2	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACATCTTGTGCATGGCTT	NA	False	NA	NA	False	AAGAAA	-24	NA	17529531	17529969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_17529500_17530000
transcript_34689.known	chr16	-	3475	3	FSM	ENSMUSG00000012114.18	ENSMUST00000232401.2	3475	3	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_2	16.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAATCGCA	NA	False	NA	NA	False	NA	NA	NA	17540776	17500138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_17503369_17515470_17515559_17540619
transcript_34691.known	chr16	+	2544	7	FSM	ENSMUSG00000022750.19	ENSMUST00000165790.9	2544	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	179.822520527572	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGGTGTTACATCTAATG	NA	False	NA	1	True	AATAAA	-10	NA	17577540	17611228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_17577571_17582247_17582511_17589567_17589734_17594265_17594985_17602066_17602260_17607000_17607235_17610289
transcript_34692.known	chr16	+	3266	4	FSM	ENSMUSG00000022750.19	ENSMUST00000144116.2	3266	4	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_1	142.007824510561	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAGAGAGAAAAAA	NA	False	NA	NA	False	TTTAAA	-14	NA	17577526	17597070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_17577559_17582247_17582511_17589567_17589734_17594265
transcript_34694.known	chr16	+	464	3	FSM	ENSMUSG00000022750.19	ENSMUST00000129199.8	464	3	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_1	154	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAATGTGCAGGAGACCCT	NA	False	NA	NA	False	NA	NA	NA	17577481	17589691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_17577559_17582247_17582511_17589567
transcript_34695.known	chr16	-	4003	10	FSM	ENSMUSG00000003166.21	ENSMUST00000117945.8	4003	10	0	0	0	0	multi-exon	TRUE	canonical	3	236	junction_7	73.3575717518876	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGGTCAGTTCTTGCTGT	NA	False	NA	-2	True	AATAAA	-18	NA	17709524	17658218	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_17660642_17661835_17662073_17662846_17663000_17667454_17667659_17674615_17674793_17675121_17675199_17676223_17676435_17677267_17677391_17690426_17690550_17709249
transcript_34699.known	chr16	-	2785	10	FSM	ENSMUSG00000003527.10	ENSMUST00000232423.2	2785	10	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_7	33.1126025018337	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATTTTTCTATCAATTGT	NA	False	NA	0	True	NA	NA	NA	17729179	17718572	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_17720188_17720681_17720798_17722865_17722976_17724134_17724238_17724972_17725107_17725383_17725502_17725613_17725784_17727768_17727865_17727951_17728121_17729025
transcript_34700.known	chr16	-	2821	10	FSM	ENSMUSG00000003527.10	ENSMUST00000003621.10	2821	10	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_7	18.4397584408805	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATTTTTCTATCAATTGT	NA	False	NA	0	True	NA	NA	NA	17729212	17718572	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_17720188_17720681_17720798_17722865_17722976_17724134_17724238_17724972_17725107_17725383_17725502_17725613_17725787_17727768_17727865_17727951_17728121_17729025
transcript_34710.known	chr16	-	1172	3	FSM	ENSMUSG00000022738.8	ENSMUST00000012279.6	1172	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	2.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCAGGATTTCAAGTCCC	NA	False	NA	NA	False	AATAAA	-25	NA	17732923	17730970	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_17731583_17732229_17732484_17732617
transcript_34711.known	chr16	+	1166	1	FSM	ENSMUSG00000103149.2	ENSMUST00000193194.2	1166	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTAAACTATGATTTGCC	NA	False	NA	NA	False	ATTAAA	-16	NA	17739906	17741072	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_17739900_17741100
transcript_34713.nnic	chr16	-	1548	9	NNC	ENSMUSG00000003528.16	novel	1666	9	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_8	623.222021032633	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCCTGTCCATCCCTTTG	NA	False	NA	-21	True	AATAAA	-16	NA	17745783	17743086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_17743792_17743893_17743968_17744052_17744169_17744298_17744404_17744519_17744605_17745017_17745157_17745230_17745331_17745408_17745517_17745667
transcript_34714.known	chr16	-	1666	9	FSM	ENSMUSG00000003528.16	ENSMUST00000003622.16	1666	9	0	0	0	0	multi-exon	FALSE	canonical	3	1593	junction_8	124.030175259894	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCCTGTCCATCCCTTTG	NA	False	NA	-21	True	AATAAA	-16	NA	17746083	17743086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_17743792_17743893_17743968_17744052_17744169_17744298_17744404_17744519_17744605_17745017_17745157_17745230_17745331_17745408_17745517_17745849
transcript_34725.known	chr16	-	495	4	FSM	ENSMUSG00000003528.16	ENSMUST00000142022.2	495	4	0	0	0	0	multi-exon	FALSE	canonical	3	1593	junction_3	162.711059516214	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGATTGAGCCTTTCAGGGG	NA	False	NA	NA	False	NA	NA	NA	17745993	17745013	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_17745157_17745230_17745331_17745408_17745517_17745849
transcript_34726.nnic	chr16	+	1030	4	NNC	ENSMUSG00000059280.5	novel	759	2	NA	NA	-1002	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.4142135623731	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGGTCTGGCTGGTTTG	55	False	NA	NA	False	ATTAAA	-14	NA	17797289	17799137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_17797431_17798076_17798268_17798352_17798475_17798561
transcript_34727.nnic	chr16	+	1710	3	NNC	ENSMUSG00000059280.5	novel	759	2	NA	NA	-1036	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGGTCTGGCTGGTTTG	21	False	NA	NA	False	ATTAAA	-14	NA	17797255	17799137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_17798268_17798352_17798475_17798561
transcript_34728.known	chr16	+	759	2	FSM	ENSMUSG00000059280.5	ENSMUST00000075371.5	759	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGGTCTGGCTGGTTTG	975	False	NA	NA	False	ATTAAA	-14	NA	17798291	17799137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_17798475_17798561
transcript_34730.known	chr16	-	2386	14	FSM	ENSMUSG00000003526.13	ENSMUST00000003620.13	2386	14	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_5	13.1900087703135	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCTTTCTCTTGGTACCT	7943	False	NA	0	True	AATAAA	-20	NA	17907156	17889588	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_17890228_17890313_17890403_17891418_17891518_17894105_17894282_17895307_17895455_17895654_17895748_17897050_17897133_17897775_17897856_17898029_17898147_17898326_17898392_17898789_17898940_17899394_17899430_17902410_17902620_17906751
transcript_34734.known	chr16	+	1086	5	FSM	ENSMUSG00000003531.16	ENSMUST00000151266.8	1086	5	0	0	0	0	multi-exon	FALSE	canonical	3	350	junction_3	38.8546972707291	2334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCCTTTCCTAGTGACTCT	NA	False	NA	30	True	AATAAA	-36	NA	17884266	17889227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_17884464_17884559_17884721_17887287_17887389_17887954_17888096_17888741
transcript_34737.known	chr16	-	687	2	FSM	ENSMUSG00000003526.13	ENSMUST00000132241.2	687	2	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATTGTCTTTTCAATTTG	8213	False	NA	NA	False	NA	NA	NA	17906886	17902067	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_17902620_17906751
transcript_34738.known	chr16	-	677	2	FSM	ENSMUSG00000003526.13	ENSMUST00000139861.2	677	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAAAATTTTTGAGTCGG	8072	False	NA	NA	False	NA	NA	NA	17907027	17878220	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_17878622_17906751
transcript_34739.known	chr16	+	1050	5	FSM	ENSMUSG00000003531.16	ENSMUST00000066027.14	1050	5	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_3	141.891463802443	628	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAGGATCCTTTCCTAGTG	NA	False	NA	25	True	AATAAA	-31	NA	17884306	17889222	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_17884464_17884559_17884721_17887287_17887389_17887945_17888096_17888741
transcript_34740.known	chr16	-	4320	14	FSM	ENSMUSG00000022718.13	ENSMUST00000009321.11	4320	14	0	0	0	0	multi-exon	TRUE	canonical	3	133	junction_13	25.6660390814434	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGGTTTCTTTCTTCTG	NA	False	NA	0	True	CATAAA	-17	NA	18107110	18071811	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_18073470_18074535_18074650_18076057_18076186_18077412_18077520_18077742_18077844_18090584_18090668_18095029_18095129_18095902_18096005_18096182_18096381_18098083_18098367_18098477_18098621_18100987_18101148_18101560_18102561_18106966
transcript_34745.known	chr16	+	2367	12	FSM	ENSMUSG00000022721.20	ENSMUST00000115640.8	2367	12	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_1	22.0168980933485	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGGTGAACCAGAGC	269	False	NA	8	True	AATAAA	-22	NA	18066746	18071366	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_18067116_18067349_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070582_18070700_18070787_18070885_18070963
transcript_34747.known	chr16	+	2235	12	FSM	ENSMUSG00000022721.20	ENSMUST00000100099.10	2235	12	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	76.7194093342424	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGGTGAACCAGAGC	448	False	NA	8	True	AATAAA	-22	NA	18066925	18071366	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_18067163_18067349_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070582_18070700_18070787_18070885_18070963
transcript_34750.known	chr16	+	3520	11	FSM	ENSMUSG00000022721.20	ENSMUST00000140206.8	3520	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_9	81.7334692766678	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGGCTTGGTTGTGCAAAA	269	False	NA	NA	False	CATAAA	-23	NA	18066746	18072636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_18067116_18067349_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070787_18070885_18070963
transcript_3476.known	chr1	-	5558	6	FSM	ENSMUSG00000026279.15	ENSMUST00000190116.7	5558	6	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_4	24.3770383763081	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAACAAAAGCAGA	NA	False	NA	NA	False	NA	NA	NA	93682502	93629656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_93633378_93642619_93642724_93644353_93644464_93652878_93653039_93677568_93678708_93682178
transcript_3477.known	chr1	-	2096	6	FSM	ENSMUSG00000026279.15	ENSMUST00000112905.4	2096	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	163.460820993901	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTGTGTAGACTGTACAT	NA	False	NA	-1	True	AATAAA	-38	NA	93682586	93633111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_93633378_93642619_93642724_93644353_93644464_93652878_93653039_93677659_93678708_93682178
transcript_34779.known	chr16	-	923	6	FSM	ENSMUSG00000005732.15	ENSMUST00000052325.7	923	6	0	0	0	0	multi-exon	FALSE	canonical	1	140	junction_5	4913.40247079353	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTTTGAAAACCTGGACC	7798	False	NA	-19	True	AATAAA	-4	NA	18065931	18057665	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18065890
transcript_34789.known	chr16	+	1377	1	FSM	ENSMUSG00000022721.20	ENSMUST00000232342.2	1377	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATTAAAAAATGTTATGG	258	False	NA	NA	False	NA	NA	NA	18066735	18068112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_18066700_18068100
transcript_3479.known	chr1	-	713	5	FSM	ENSMUSG00000026279.15	ENSMUST00000189728.7	713	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	175.089262948931	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTAGACTGTACATTTT	NA	False	NA	2	True	AATAAA	-41	NA	93659648	93633108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_93633378_93642619_93642724_93644353_93644464_93652878_93653039_93659578
transcript_34790.known	chr16	-	1085	6	FSM	ENSMUSG00000005732.15	ENSMUST00000115645.10	1085	6	0	0	0	0	multi-exon	FALSE	canonical	3	10558	junction_4	1553.51498222579	25243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCTGACAAGGCTATGTG	7133	False	NA	-1	True	AATAAA	-22	NA	18066596	18057647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18066411
transcript_34791.known	chr16	+	517	2	FSM	ENSMUSG00000022721.20	ENSMUST00000232015.2	517	2	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGGTGAACCAGAGC	4293	False	NA	8	True	AATAAA	-22	NA	18070770	18071366	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_18070885_18070963
transcript_34800.nic	chr16	-	1600	9	NIC	ENSMUSG00000013539.15	novel	1622	9	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	52	junction_8	63.9256159532311	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTGGCTTTTTCTAA	NA	False	NA	-4	True	AATAAA	-16	NA	18161785	18118688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220_18142315_18161661
transcript_34801.known	chr16	-	1622	9	FSM	ENSMUSG00000013539.15	ENSMUST00000115628.10	1622	9	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_8	57.8273291792038	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGAGTGTTGGCTTTTTCT	NA	False	NA	-6	True	AATAAA	-14	NA	18161906	18118690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220_18142315_18161758
transcript_34802.nic	chr16	-	1683	9	NIC	ENSMUSG00000013539.15	novel	1622	9	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_8	76.5371641753207	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTGGCTTTTTCTAA	NA	False	NA	-4	True	AATAAA	-16	NA	18165941	18118688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220_18142315_18165734
transcript_34805.known	chr16	-	1495	8	FSM	ENSMUSG00000013539.15	ENSMUST00000128580.8	1495	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	80.7568787744286	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTGGCTTTTTCTAA	NA	False	NA	-4	True	AATAAA	-16	NA	18142314	18118688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_18119417_18120549_18120655_18121546_18121720_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220
transcript_34806.known	chr16	+	1905	18	FSM	ENSMUSG00000075704.18	ENSMUST00000115606.9	1905	18	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_11	21.0007414599702	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGCGTGTGCTGTCCCC	NA	False	NA	NA	False	AATAAA	-21	NA	18245166	18297823	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_18245310_18248560_18248627_18255310_18255368_18256251_18256397_18257068_18257144_18259542_18259622_18260497_18260561_18261953_18262025_18272470_18272491_18273238_18273331_18274773_18274949_18287499_18287637_18290903_18291000_18291543_18291637_18293431_18293504_18294271_18294370_18296400_18296608_18297607
transcript_34809.known	chr16	+	4232	17	FSM	ENSMUSG00000118669.2	ENSMUST00000239547.1	4232	17	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_7	30.582815333942	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAAGTTTGTGACTCATTC	NA	False	NA	18	True	NA	NA	NA	18210480	18225821	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_18210578_18214823_18214983_18215161_18215692_18216576_18217077_18217711_18217896_18218405_18218524_18218834_18219004_18220316_18220389_18221357_18221486_18221649_18221801_18222075_18222275_18222377_18222490_18222583_18222672_18222884_18222939_18223209_18223296_18223851_18223972_18224356
transcript_34811.known	chr16	+	1809	17	FSM	ENSMUSG00000075704.18	ENSMUST00000206606.3	1809	17	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_13	32.1674694955945	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATGTCTGCGTGTGCTGTC	NA	False	NA	NA	False	AATAAA	-18	NA	18245166	18297820	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_18245310_18248560_18248627_18255310_18255368_18256251_18256397_18257068_18257144_18259542_18259622_18260497_18260561_18261953_18262025_18272470_18272491_18273238_18273331_18274773_18274949_18287499_18287637_18290903_18291000_18293431_18293504_18294271_18294370_18296400_18296608_18297607
transcript_34813.known	chr16	+	1866	17	FSM	ENSMUSG00000075704.18	ENSMUST00000205679.3	1866	17	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	28.8766233309921	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCATGTCTGCGTGTGCT	NA	False	NA	NA	False	AATAAA	-15	NA	18245133	18297817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_18245310_18255310_18255368_18256251_18256397_18257068_18257144_18259542_18259622_18260497_18260561_18261953_18262025_18272470_18272491_18273238_18273331_18274773_18274949_18287499_18287637_18290903_18291000_18291543_18291637_18293431_18293504_18294271_18294370_18296400_18296608_18297607
transcript_3482.known	chr1	-	2001	3	FSM	ENSMUSG00000026279.15	ENSMUST00000189173.2	2001	3	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_1	9	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGTAC	NA	False	NA	NA	False	NA	NA	NA	93682372	93652370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_93653039_93677568_93678708_93682178
transcript_34822.known	chr16	+	1235	11	FSM	ENSMUSG00000075704.18	ENSMUST00000115604.8	1235	11	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_9	21.8229237271269	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTGGTGCTGTCATTTA	NA	False	NA	NA	False	NA	NA	NA	18245187	18275218	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_18245310_18248560_18248627_18255310_18255368_18256251_18256397_18257068_18257144_18259542_18259622_18260497_18260561_18261953_18262025_18272470_18272491_18273238_18273331_18274773
transcript_34827.nic	chr16	+	998	7	NIC	ENSMUSG00000075704.18	novel	403	4	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	35.6588776541769	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATGTCTGCGTGTGCTGTC	NA	False	NA	NA	False	AATAAA	-18	NA	18290589	18297820	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_+_18290809_18290903_18291000_18291543_18291637_18293431_18293504_18294271_18294370_18296400_18296608_18297607
transcript_34830.nnic	chr16	-	1821	7	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	8	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	81.8299388298005	168	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACTGAGTTATTCTTTTC	3896	False	NA	NA	False	ATTAAA	-26	NA	18245346	18225627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_18226036_18226269_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18243053_18243111_18245105
transcript_34831.nnic	chr16	-	1816	7	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	8	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	81.8299388298005	174	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACTGAGTTATTCTTTTC	3896	False	NA	NA	False	ATTAAA	-26	NA	18245346	18225627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_18226056_18226294_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18243053_18243111_18245105
transcript_34837.nnic	chr16	-	1795	6	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	-23	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	90.2773504263389	110	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACTGAGTTATTCTTTTC	3865	False	NA	NA	False	ATTAAA	-26	NA	18245377	18225627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_18226036_18226269_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18245105
transcript_34838.nnic	chr16	-	1732	6	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	35	8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	90.2773504263389	111	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACTGAGTTATTCTTTTC	3923	False	NA	NA	False	ATTAAA	-26	NA	18245319	18225627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_18226056_18226294_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18245105
transcript_34840.known	chr16	-	1397	6	FSM	ENSMUSG00000000326.14	ENSMUST00000000335.12	1397	6	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_5	48.2825020064205	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGGGGG	3888	False	NA	NA	False	AAAAAG	-9	NA	18245354	18226293	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18243053_18243111_18245105
transcript_34845.known	chr16	-	1866	5	FSM	ENSMUSG00000000326.14	ENSMUST00000115609.10	1866	5	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_4	51.7656981021216	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAACTGGAAGAGGAGATTT	3640	False	NA	NA	False	NA	NA	NA	18245602	18226015	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18245105
transcript_34848.known	chr16	+	1604	4	FSM	ENSMUSG00000118669.2	ENSMUST00000239537.1	1604	4	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_1	37.8505834389203	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTATAGTTTTTCCTTGTT	NA	False	NA	NA	False	GATAAA	-20	NA	18210447	18217361	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_18210578_18214823_18214983_18215161_18215692_18216576
transcript_34851.known	chr16	+	532	4	FSM	ENSMUSG00000075704.18	ENSMUST00000131303.8	532	4	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	7.03957069398096	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTCCCTGACTGTCTCT	NA	False	NA	12	True	NA	NA	NA	18245211	18256562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_18245310_18248560_18248627_18255310_18255368_18256251
transcript_34856.known	chr16	+	672	3	FSM	ENSMUSG00000087556.2	ENSMUST00000150389.2	672	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAAGGCAGGGTGGTGTT	NA	False	NA	NA	False	NA	NA	NA	18235431	18240747	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_18235667_18239918_18240038_18240429
transcript_34861.known	chr16	+	3829	16	FSM	ENSMUSG00000118669.2	ENSMUST00000239538.1	3829	16	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_7	31.2985622672991	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATGAAGAAAACTGACAA	NA	False	NA	-32	True	NA	NA	NA	18210453	18225006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_18210578_18214823_18214983_18215161_18215692_18216576_18217077_18217711_18217896_18218405_18218524_18218834_18219004_18220316_18220389_18221357_18221486_18221649_18221801_18222075_18222275_18222377_18222490_18222583_18222672_18222884_18222939_18223209_18223296_18223851
transcript_34862.known	chr16	+	640	3	FSM	ENSMUSG00000075704.18	ENSMUST00000138310.3	640	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	48.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGCGTTAGTGCCTTTTG	NA	False	NA	NA	False	NA	NA	NA	18259550	18261199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_18259622_18260497_18260561_18260693
transcript_34870.known	chr16	+	3592	9	FSM	ENSMUSG00000000884.18	ENSMUST00000167778.9	3592	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	139.677082944913	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGGATCTCAGATGCCCT	NA	False	NA	NA	False	NA	NA	NA	18317635	18385377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_18317702_18317795_18317891_18359184_18359326_18359721_18359848_18362864_18363024_18363866_18363964_18366842_18366942_18371116_18371333_18382784
transcript_34872.known	chr16	+	1519	9	FSM	ENSMUSG00000000884.18	ENSMUST00000115600.4	1519	9	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_6	127.861191825354	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGAAGCCTCAAGGTGGGA	NA	False	NA	13	True	AATAAA	-15	NA	18317651	18383288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_18317702_18317795_18317891_18359184_18359326_18359721_18359848_18362860_18363024_18366842_18366942_18367684_18367810_18371116_18371333_18382784
transcript_34874.known	chr16	+	1412	8	FSM	ENSMUSG00000000884.18	ENSMUST00000000904.15	1412	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_4	116.273604143022	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTCAAGGTGGGAACTT	NA	False	NA	17	True	AATAAA	-19	NA	18317533	18383292	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_18317602_18317795_18317891_18359184_18359326_18359721_18359848_18362864_18363024_18366842_18366942_18371116_18371333_18382784
transcript_34881.known	chr16	+	3549	8	FSM	ENSMUSG00000000884.18	ENSMUST00000090086.11	3549	8	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_1	38.76564858485	508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCTAGACTTGATTTGTCC	NA	False	NA	NA	False	NA	NA	NA	18317637	18385429	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_18317702_18317795_18317891_18359184_18359326_18359721_18359848_18362860_18363024_18366842_18366942_18371116_18371333_18382784
transcript_34883.known	chr16	+	3507	8	FSM	ENSMUSG00000000884.18	ENSMUST00000115601.8	3507	8	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_6	106.395104997114	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCTAGACTTGATTTGTCC	NA	False	NA	NA	False	NA	NA	NA	18317637	18385429	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_18317702_18317795_18317891_18359184_18359326_18359721_18359848_18362860_18363024_18366842_18366942_18371158_18371333_18382784
transcript_34890.nnic	chr16	+	1359	7	NIC	ENSMUSG00000000884.18	novel	1519	9	NA	NA	12	0	combination_of_known_splicesites	FALSE	canonical	3	34	junction_2	97.958182688102	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGAAGCCTCAAGGTGGGA	NA	False	NA	13	True	AATAAA	-15	NA	18317545	18383288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_+_18317702_18317795_18317891_18359721_18359848_18362860_18363024_18366842_18366942_18371116_18371333_18382784
transcript_34924.known	chr16	+	865	3	FSM	ENSMUSG00000086965.2	ENSMUST00000146673.2	865	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	96	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGTTGAGTACCATGCC	NA	False	NA	NA	False	AAAACA	-1	NA	18317650	18320408	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_18317702_18317795_18317891_18319689
transcript_34926.known	chr16	+	455	3	FSM	ENSMUSG00000000884.18	ENSMUST00000232235.2	455	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	106	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGGGGTCCACTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	18317689	18383132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_18317702_18317795_18317891_18382784
transcript_34927.known	chr16	-	880	1	FSM	ENSMUSG00000116825.2	ENSMUST00000231787.2	880	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGGTTTTTATACAAGAA	NA	False	NA	NA	False	NA	NA	NA	18500966	18500086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_18500100_18501000
transcript_34928.known	chr16	+	1416	1	FSM	ENSMUSG00000041378.3	ENSMUST00000043577.3	1416	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTCCTGTCCTCTGTCC	NA	False	NA	NA	False	AGTAAA	-19	NA	18595596	18597012	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_18595600_18597000
transcript_34929.known	chr16	-	2143	20	FSM	ENSMUSG00000000028.16	ENSMUST00000000028.14	2143	20	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_19	120.274616521947	2228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGTCTGTGATCTTATT	NA	False	NA	-2	True	AATAAA	-21	NA	18630722	18599196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_18599324_18600645_18600713_18603555_18603633_18603822_18603942_18605518_18605603_18605679_18605819_18611927_18612090_18613511_18613611_18613844_18613977_18614574_18614695_18616098_18616150_18617425_18617488_18620550_18620600_18624131_18624188_18626029_18626174_18627481_18627620_18629138_18629232_18630054_18630115_18630264_18630460_18630553
transcript_34933.known	chr16	-	1747	18	FSM	ENSMUSG00000000028.16	ENSMUST00000096990.10	1747	18	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_15	122.52143375795	1121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCCTCTGGGTCTGTGAT	NA	False	NA	-8	True	AATAAA	-15	NA	18630376	18599202	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_18599324_18600645_18600713_18603555_18603633_18603822_18603942_18605518_18605603_18605679_18605819_18611927_18612090_18613511_18613611_18613844_18613977_18614574_18614695_18616098_18616150_18617425_18617488_18620550_18620600_18624131_18624188_18626029_18626174_18629138_18629232_18630054_18630115_18630264
transcript_34934.known	chr16	+	934	11	FSM	ENSMUSG00000005262.14	ENSMUST00000172013.9	934	11	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	128.968562060682	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGTAAGTTAATTTCATTG	NA	False	NA	NA	False	AAAAAG	-7	NA	18631050	18646464	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_18631168_18633579_18633687_18634078_18634112_18636652_18636775_18639788_18639920_18641972_18642046_18643737_18643807_18644502_18644569_18645004_18645053_18645767_18645857_18646385
transcript_34935.known	chr16	+	1996	12	FSM	ENSMUSG00000005262.14	ENSMUST00000005394.13	1996	12	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_10	35.0072011482124	1655	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGATATGGTATGTTGT	NA	False	NA	10	True	AATAAA	-20	NA	18631043	18654011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_18631168_18633579_18633713_18634078_18634112_18636652_18636775_18639788_18639920_18641972_18642046_18643737_18643807_18644502_18644569_18645004_18645053_18645767_18645857_18646385_18646468_18652985
transcript_34937.nnic	chr16	+	1220	4	NNC	ENSMUSG00000071632.11	novel	1281	3	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	72.2695571377664	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGTCTCAATTAGGGTT	NA	False	NA	17	True	ATTAAA	-17	NA	18655315	18658910	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_18655370_18655455_18655624_18657839_18658618_18658690
transcript_34938.known	chr16	+	361	3	FSM	ENSMUSG00000071632.11	ENSMUST00000123146.8	361	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	39.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGACTGGAAACTTAACT	NA	False	NA	NA	False	AGTAAA	-17	NA	18655330	18656137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_18655370_18655455_18655624_18655983
transcript_3494.known	chr1	-	1055	2	FSM	ENSMUSG00000026281.16	ENSMUST00000112890.3	1055	2	0	0	0	0	multi-exon	FALSE	canonical	3	2511	junction_1	0	6339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACCCGGCTTGTTTTGTTT	2338	False	NA	NA	False	NA	NA	NA	93729628	93727786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_93728633_93729419
transcript_34941.known	chr16	+	1281	3	FSM	ENSMUSG00000071632.11	ENSMUST00000055413.13	1281	3	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	45.5	593	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGTCTCAATTAGGGTT	NA	False	NA	17	True	ATTAAA	-17	NA	18655327	18658910	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_18655370_18655455_18655624_18657839
transcript_34945.known	chr16	-	778	4	FSM	ENSMUSG00000022706.17	ENSMUST00000119273.2	778	4	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_3	827.835061403471	633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGAGTATCTGTCTTTTG	NA	False	NA	-24	True	AATAAA	-7	NA	18695289	18690975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_18691413_18692286_18692446_18694073_18694187_18695220
transcript_3495.known	chr1	-	1003	5	FSM	ENSMUSG00000026281.16	ENSMUST00000027503.14	1003	5	0	0	0	0	multi-exon	FALSE	canonical	3	1212	junction_3	505.005136112495	9580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGAGCTTTGGTTCTGCCCCT	2310	False	NA	-20	True	AATAAA	-24	NA	93729656	93720297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_93720666_93722447_93722646_93726101_93726193_93728523_93728633_93729419
transcript_34950.known	chr16	-	1280	4	FSM	ENSMUSG00000022706.17	ENSMUST00000023391.16	1280	4	0	0	0	0	multi-exon	FALSE	canonical	3	1642	junction_3	87.6711025493704	8287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGTCGTTTATTTTAATC	NA	False	NA	-7	True	AATAAA	-15	NA	18695612	18690767	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_18691413_18692286_18692446_18694073_18694158_18695220
transcript_34952.known	chr16	+	2044	13	FSM	ENSMUSG00000022702.17	ENSMUST00000120532.9	2044	13	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	35.0186458269813	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTGCTGATTATCCAGA	NA	False	NA	7	True	AATAAA	-16	NA	18695786	18746761	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_18695965_18713523_18713587_18715203_18715315_18716447_18716539_18718112_18718208_18729397_18729494_18730795_18730957_18735189_18735358_18737725_18737840_18741066_18741138_18741603_18741710_18744397_18744614_18746187
transcript_34955.known	chr16	-	408	1	FSM	ENSMUSG00000083658.2	ENSMUST00000120082.2	408	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCCACCACGGAGGTTA	NA	False	NA	NA	False	NA	NA	NA	18763415	18763007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_18763000_18763400
transcript_3496.known	chr1	+	4533	8	FSM	ENSMUSG00000026283.14	ENSMUST00000027505.13	4533	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	74.6873756509937	435	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAACATTTGAAAGTAGA	NA	False	NA	NA	False	AATAAA	-12	NA	93731686	93749817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_93731762_93733769_93733842_93739503_93739671_93740128_93740241_93740387_93740482_93744096_93744233_93744359_93744422_93746002
transcript_34960.nnic	chr16	+	629	3	NNC	ENSMUSG00000106567.2	novel	458	4	NA	NA	-15545	155	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.5	18	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTTGTTCTGCTAACCT	NA	False	NA	NA	False	NA	NA	NA	18854571	18925654	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_18854906_18918001_18918098_18925455
transcript_34962.known	chr16	+	4258	4	FSM	ENSMUSG00000022686.15	ENSMUST00000079780.10	4258	4	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	15.8954920234218	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCAGTAATGTGAATTTAA	NA	False	NA	7	True	AATAAA	-15	NA	19578983	19591213	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_19579228_19579390_19579578_19583857_19583965_19587493
transcript_34966.known	chr16	+	2229	3	FSM	ENSMUSG00000022686.15	ENSMUST00000119468.2	2229	3	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	50.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGAATGAGGACATATGTGGA	NA	False	NA	NA	False	NA	NA	NA	19579803	19589374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_19580045_19583857_19583965_19587493
transcript_34968.known	chr16	+	8172	8	FSM	ENSMUSG00000062901.4	ENSMUST00000023509.5	8172	8	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	11.8562822407122	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGATGAGTTTTAAGTTTG	NA	False	NA	9	True	ATTAAA	-17	NA	19916291	19947971	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_19916422_19920741_19920805_19925412_19926394_19933310_19933496_19934633_19934753_19936617_19936807_19938859_19939049_19941655
transcript_34971.known	chr16	+	2109	1	FSM	ENSMUSG00000062901.4	ENSMUST00000231740.2	2109	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGATTTCATT	NA	False	NA	NA	False	AATAAA	-23	NA	19916323	19918432	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_19916300_19918400
transcript_34975.known	chr16	-	3280	3	FSM	ENSMUSG00000041205.9	ENSMUST00000040880.9	3280	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTCAATATTAATTATTCC	NA	False	NA	NA	False	AATAAA	-29	NA	20060108	20052052	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_20054790_20055336_20055455_20059683
transcript_34989.known	chr16	-	848	7	FSM	ENSMUSG00000033918.17	ENSMUST00000232484.2	848	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_6	637.544682529956	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTCAGCATCGGCCACCC	NA	False	NA	-122	True	NA	NA	NA	20121129	20098675	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_20098836_20101472_20101571_20101673_20101776_20104514_20104586_20105669_20105820_20106606_20106703_20120958
transcript_3499.known	chr1	+	3232	10	FSM	ENSMUSG00000073609.10	ENSMUST00000097633.10	3232	10	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	12.154357040244	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTCTCCACACATTTAGT	NA	False	NA	NA	False	CATAAA	-27	NA	93752961	93780070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_93753042_93754006_93754363_93756927_93756986_93757478_93757619_93760317_93760512_93763008_93763178_93765661_93765806_93766542_93766686_93775824_93775991_93778288
transcript_34990.known	chr16	-	1348	10	FSM	ENSMUSG00000033918.17	ENSMUST00000048642.15	1348	10	0	0	0	0	multi-exon	FALSE	canonical	3	1528	junction_6	107.954723019524	13854	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTTCGTTCCTTCAGAG	NA	False	NA	-16	True	AATAAA	-24	NA	20121137	20098569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_20098836_20101472_20101571_20101673_20101776_20104514_20104586_20105669_20105820_20106606_20106703_20112103_20112153_20116342_20116484_20116880_20117077_20120958
transcript_34991.known	chr16	-	1246	9	FSM	ENSMUSG00000033918.17	ENSMUST00000232036.2	1246	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	583.055301300829	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTTCGTTCCTTCAGAG	NA	False	NA	-16	True	AATAAA	-24	NA	20121137	20098569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_20098836_20101472_20101571_20104514_20104586_20105669_20105820_20106606_20106703_20112103_20112153_20116342_20116484_20116880_20117077_20120958
transcript_34992.known	chr16	-	1362	10	FSM	ENSMUSG00000033918.17	ENSMUST00000136252.8	1362	10	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_6	534.615126360388	853	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTTCGTTCCTTCAGAG	NA	False	NA	-16	True	AATAAA	-24	NA	20121095	20098569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_20098836_20101472_20101571_20101673_20101776_20104514_20104586_20105669_20105820_20106606_20106703_20112047_20112153_20116342_20116484_20116880_20117077_20120958
transcript_34993.known	chr16	-	356	2	FSM	ENSMUSG00000033918.17	ENSMUST00000153275.2	356	2	0	0	0	0	multi-exon	FALSE	canonical	3	1878	junction_1	0	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGGCCACTGCTATTGTA	NA	False	NA	NA	False	NA	NA	NA	20121111	20116873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_20117077_20120958
transcript_34995.known	chr16	-	1497	9	FSM	ENSMUSG00000022818.14	ENSMUST00000182741.2	1497	9	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_8	1.5612494995996	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCCACTGCAGTCCCCC	NA	False	NA	NA	False	NA	NA	NA	20135500	20128525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_20128732_20128831_20128974_20130978_20131167_20131777_20131920_20132477_20132652_20132947_20133109_20133704_20133855_20134622_20134786_20135329
transcript_34996.known	chr16	-	5811	30	FSM	ENSMUSG00000022822.17	ENSMUST00000079158.13	5811	30	0	0	0	0	multi-exon	TRUE	canonical	3	160	junction_25	98.9917903368873	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCTTGTTGTATAAAACAG	NA	False	NA	-3	True	AATAAA	-20	NA	20245144	20150052	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_20151456_20152335_20152501_20153855_20153970_20157625_20157705_20163384_20163545_20176118_20176309_20180931_20181022_20182724_20182912_20184354_20184484_20184562_20184717_20186791_20186922_20187173_20187321_20187775_20187961_20190869_20190970_20193740_20193885_20195260_20195465_20197196_20197270_20197391_20197517_20208118_20208191_20211200_20211558_20214764_20214873_20215729_20215879_20217562_20217711_20218224_20218399_20218555_20218790_20223315_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
transcript_35.known	ERCC-00074	+	506	1	FSM	ERCC-00074A	DQ516754	506	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	279203	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	506	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00074_+_0_500
transcript_35002.nic	chr16	-	1374	8	ISM	ENSMUSG00000022822.17	ENSMUST00000079158.13	5811	30	-32	67514	-32	0	5prime_fragment	FALSE	canonical	3	160	junction_3	84.1085304708101	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGTGAGTTTAAAGACTT	NA	False	NA	NA	False	ATTAAA	-37	NA	20245176	20217566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_-_20217711_20218224_20218399_20218555_20218790_20223315_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
transcript_35004.nic	chr16	-	2487	7	ISM	ENSMUSG00000022822.17	ENSMUST00000079158.13	5811	30	63837	0	1449	0	3prime_fragment	FALSE	canonical	3	439	junction_6	35.3949933684915	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCTTGTTGTATAAAACAG	NA	False	NA	-3	True	AATAAA	-20	NA	20181307	20150052	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_-_20151456_20152335_20152501_20153855_20153970_20157625_20157705_20163384_20163545_20176118_20176309_20180931
transcript_35007.nnic	chr16	-	1171	7	NNC	ENSMUSG00000022822.17	novel	1136	7	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	1	9	junction_2	90.516419627724	119	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGGTATTTACTGCTG	NA	False	NA	-9	True	AATAAA	-17	NA	20245176	20219510	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_20219785_20221009_20221085_20223315_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
transcript_35008.known	chr16	-	1136	7	FSM	ENSMUSG00000022822.17	ENSMUST00000096199.5	1136	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	91.9287163452688	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGGTATTTACTGCTG	NA	False	NA	-9	True	AATAAA	-17	NA	20245104	20219510	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_20219822_20221009_20221085_20223315_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
transcript_3501.known	chr1	+	3459	10	FSM	ENSMUSG00000073609.10	ENSMUST00000112881.8	3459	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	13.9761701954911	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTCTCCACACATTTAGT	NA	False	NA	NA	False	CATAAA	-27	NA	93752995	93780070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_93753303_93754006_93754363_93756927_93756986_93757478_93757619_93760317_93760512_93763008_93763178_93765661_93765806_93766542_93766686_93775824_93775991_93778288
transcript_35010.nnic	chr16	-	2297	6	NIC	ENSMUSG00000022822.17	novel	5811	30	NA	NA	1449	0	intron_retention	FALSE	canonical	3	23	junction_5	193.430090730476	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCTTGTTGTATAAAACAG	NA	False	NA	-3	True	AATAAA	-20	NA	20181307	20150052	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_-_20151456_20152335_20152501_20153855_20153970_20157625_20157705_20163384_20163545_20180931
transcript_35014.known	chr16	-	4526	5	FSM	ENSMUSG00000022822.17	ENSMUST00000134962.2	4526	5	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_2	11.3578166916005	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGGTATTTACTGCTGT	NA	False	NA	-8	True	AATAAA	-18	NA	20245074	20219509	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
transcript_35016.known	chr16	+	2554	16	FSM	ENSMUSG00000003235.14	ENSMUST00000003320.14	2554	16	0	0	0	0	multi-exon	TRUE	canonical	3	2657	junction_7	154.998007155648	479	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTTTGTACTTGTTAAT	NA	False	NA	27	True	AGTAAA	-18	NA	20317566	20328073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_20317847_20318934_20319060_20320113_20320300_20320379_20320558_20320653_20320735_20320992_20321071_20321279_20321593_20323394_20323541_20323948_20324091_20324211_20324314_20324877_20324986_20325130_20325222_20325757_20325882_20326777_20326904_20327458_20327570_20327710
transcript_3502.nic	chr1	+	1587	9	ISM	ENSMUSG00000073609.10	ENSMUST00000097633.10	3232	10	-17	3960	-17	-3960	5prime_fragment	FALSE	canonical	3	12	junction_1	12.5573683548744	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGAAAGCTTAACTTGCC	NA	False	NA	NA	False	NA	NA	NA	93752944	93776110	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_93753042_93754006_93754363_93756927_93756986_93757478_93757619_93760317_93760512_93763008_93763178_93765661_93765806_93766542_93766686_93775824
transcript_35022.known	chr16	+	2080	11	FSM	ENSMUSG00000022841.16	ENSMUST00000090023.13	2080	11	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_4	799.773617969485	2128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTTGTTTGGGTCTTG	1353	False	NA	17	True	NA	NA	NA	20354227	20362806	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359724_20359861_20359959_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361501_20362060
transcript_35026.known	chr16	+	3090	21	FSM	ENSMUSG00000003234.17	ENSMUST00000003319.6	3090	21	0	0	0	0	multi-exon	TRUE	canonical	3	293	junction_13	17.6705970470723	412	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGACACGTGCAAGAGCATG	NA	False	NA	10	True	AATAAA	-19	NA	20367326	20380129	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_20367496_20367715_20367864_20367984_20368065_20368493_20368541_20368753_20368852_20368951_20369075_20369170_20369438_20370223_20370305_20370393_20370454_20370555_20370613_20370711_20370735_20370848_20370905_20371008_20371210_20371303_20371381_20377309_20377355_20377446_20377580_20378040_20378130_20378390_20378483_20378664_20378798_20378932_20379021_20379106
transcript_35030.known	chr16	+	3152	19	FSM	ENSMUSG00000022842.19	ENSMUST00000003898.12	3152	19	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_18	7.37781124490401	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCAGCCTGTCTCTTCCTT	NA	False	NA	13	True	AATAAA	-13	NA	20448577	20464665	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_20448798_20449101_20449189_20449530_20449661_20449846_20450063_20451281_20451407_20451497_20451645_20451799_20451866_20456410_20456600_20457409_20457553_20457921_20458037_20459364_20459476_20461024_20461124_20461222_20461301_20462095_20462200_20462372_20462484_20462602_20462671_20462817_20463009_20463090_20463187_20463809
transcript_35039.known	chr16	-	1308	8	FSM	ENSMUSG00000033809.16	ENSMUST00000123774.2	1308	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	136.842975705734	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTTTGTGCAGCATACATA	NA	False	NA	-9	True	AATAAA	-14	NA	20429497	20424222	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427235_20427397_20427491_20427640_20429292
transcript_35040.known	chr16	-	1239	8	FSM	ENSMUSG00000033809.16	ENSMUST00000231904.2	1239	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	139.378650313688	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGGAACGGACTCTGTG	NA	False	NA	-55	True	NA	NA	NA	20429511	20424268	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427235_20427397_20427491_20427640_20429329
transcript_35041.known	chr16	-	1280	8	FSM	ENSMUSG00000033809.16	ENSMUST00000231531.2	1280	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	147.566795667838	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATAAAGTTAGTGGTTGCT	NA	False	NA	6	True	AATAAA	-29	NA	20430485	20424207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427235_20427397_20427491_20427640_20430323
transcript_35044.known	chr16	-	1132	7	FSM	ENSMUSG00000033809.16	ENSMUST00000127454.8	1132	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	157.124154731219	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTGTGCAGCATACATAA	NA	False	NA	-8	True	AATAAA	-15	NA	20429481	20424221	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427491_20427640_20429292
transcript_35045.known	chr16	-	1078	7	FSM	ENSMUSG00000033809.16	ENSMUST00000147867.3	1078	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	158.953260076316	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGGAACGGACTCTGTG	NA	False	NA	-55	True	NA	NA	NA	20429511	20424268	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427491_20427640_20429329
transcript_3505.nic	chr1	+	801	2	ISM	ENSMUSG00000073609.10	ENSMUST00000112881.8	3459	10	-42	25612	-8	278	5prime_fragment	FALSE	canonical	2	4	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATTAAAAGGTGTAGCACT	NA	False	NA	NA	False	AATAAA	-7	NA	93752953	93754458	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_93753303_93754006
transcript_35057.known	chr16	-	1451	9	FSM	ENSMUSG00000033809.16	ENSMUST00000045918.15	1451	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	107.475578621378	1122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTAGTGGTTGCTCGTGCCT	NA	False	NA	13	True	AATAAA	-36	NA	20429518	20424200	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427235_20427397_20427491_20427640_20427736_20427837_20429292
transcript_35058.known	chr16	-	1215	8	FSM	ENSMUSG00000033809.16	ENSMUST00000231471.2	1215	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	139.403247114701	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGGAACGGACTCTGTG	NA	False	NA	-55	True	NA	NA	NA	20429511	20424268	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427491_20427640_20427736_20427837_20429292
transcript_35059.known	chr16	+	1134	3	FSM	ENSMUSG00000115219.3	ENSMUST00000115522.10	1134	3	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_2	23	971	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGACTGCTTTATGCTTCTG	5899	False	NA	12	True	NA	NA	NA	20430342	20437761	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_20430571_20436375_20436660_20437139
transcript_35060.known	chr16	+	3001	21	FSM	ENSMUSG00000006998.17	ENSMUST00000172207.8	3001	21	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	681.526116520857	4113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTCTGTCTATTTCCTGG	NA	False	NA	23	True	AATAAA	-16	NA	20470453	20482164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_20470602_20470901_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
transcript_35061.known	chr16	+	2961	21	FSM	ENSMUSG00000006998.17	ENSMUST00000007212.9	2961	21	0	0	0	0	multi-exon	FALSE	canonical	3	2673	junction_8	225.447882003801	5151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTCTGTCTATTTCCTGG	NA	False	NA	23	True	AATAAA	-16	NA	20470401	20482164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
transcript_35063.known	chr16	+	5394	32	FSM	ENSMUSG00000045983.17	ENSMUST00000073840.12	5394	32	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_1	320.871770382026	375	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTATTGCCTCTTTACT	NA	False	NA	14	True	ATTAAA	-14	NA	20491498	20511631	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_20491627_20492617_20492712_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500486_20500673_20500791_20500990_20501408_20501556_20502167_20502405_20502561_20502667_20502771_20502932_20503157_20503259_20504260_20504364_20504608_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
transcript_3507.known	chr1	+	2112	3	FSM	ENSMUSG00000051185.10	ENSMUST00000059975.8	2112	3	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_2	1	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACAGCGTTCTAGTTGCC	NA	False	NA	NA	False	AATAAA	-20	NA	95241347	95263009	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_95241976_95252833_95252969_95261660
transcript_35070.known	chr16	-	3128	24	FSM	ENSMUSG00000022843.18	ENSMUST00000007207.15	3128	24	0	0	0	0	multi-exon	TRUE	canonical	3	159	junction_10	37.9003269459341	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGCTGTTGGCTCATAT	NA	False	NA	1	True	AATAAA	-39	NA	20534867	20521713	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_20522188_20522304_20522392_20525923_20526029_20526168_20526208_20526322_20526383_20526592_20526667_20526826_20526942_20527043_20527217_20527383_20527518_20527851_20528066_20528319_20528431_20528629_20528700_20529021_20529178_20529304_20529390_20530439_20530542_20530641_20530727_20530806_20530933_20531061_20531141_20531221_20531300_20531403_20531538_20531629_20531759_20532077_20532210_20532362_20532520_20534658
transcript_35073.known	chr16	+	962	7	FSM	ENSMUSG00000050821.15	ENSMUST00000232207.2	962	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.687184270936277	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCCTGGAGGATGGGTTA	NA	False	NA	NA	False	NA	NA	NA	20512000	20520314	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_20512223_20513517_20513580_20514488_20514632_20517671_20517766_20518017_20518201_20518378_20518496_20520173
transcript_35077.known	chr16	+	858	5	FSM	ENSMUSG00000021018.9	ENSMUST00000161038.2	858	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	331.022185812371	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGAAGCTGGCCTTCTGA	1411	False	NA	NA	False	NA	NA	NA	20536921	20540757	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_20537420_20537573_20537658_20537740_20537835_20539268_20539353_20540659
transcript_35078.known	chr16	+	678	5	FSM	ENSMUSG00000021018.9	ENSMUST00000231392.2	678	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	331.022185812371	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTCTTCTCCATTGTCAT	1345	False	NA	12	True	ATTAAA	-13	NA	20536855	20541014	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_20536917_20537573_20537658_20537740_20537835_20539268_20539353_20540659
transcript_35079.known	chr16	+	950	5	FSM	ENSMUSG00000021018.9	ENSMUST00000021405.8	950	5	0	0	0	0	multi-exon	FALSE	canonical	3	628	junction_4	109.533955922353	8998	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCTCCATTGTCATTGC	904	False	NA	15	True	ATTAAA	-16	NA	20536414	20541017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_20536745_20537573_20537658_20537740_20537835_20539268_20539353_20540659
transcript_35080.known	chr16	+	689	4	FSM	ENSMUSG00000021018.9	ENSMUST00000231656.2	689	4	0	0	0	0	multi-exon	FALSE	canonical	1	21	junction_2	345.101273380567	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCTTCTCCATTGTCATT	1069	False	NA	13	True	ATTAAA	-14	NA	20536579	20541015	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_20536745_20537573_20537658_20539268_20539353_20540659
transcript_35081.known	chr16	-	1558	6	FSM	ENSMUSG00000022847.16	ENSMUST00000076422.13	1558	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	5.38887743412299	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTGCTTTCATACATTAA	NA	False	NA	2	True	TATAAA	-23	NA	20549348	20543907	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_20544833_20545055_20545224_20547131_20547219_20547468_20547597_20547813_20547968_20549252
transcript_35082.known	chr16	-	1620	6	FSM	ENSMUSG00000022847.16	ENSMUST00000232217.2	1620	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	9.9196774141098	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAGCGATCTTTGGTCTAT	NA	False	NA	-52	True	NA	NA	NA	20549377	20543961	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_20544833_20545055_20545224_20547131_20547219_20547468_20547684_20547813_20547968_20549252
transcript_35084.known	chr16	-	547	1	FSM	ENSMUSG00000116776.2	ENSMUST00000232027.2	547	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATGCAGCATAAAATAAA	5806	False	NA	NA	False	ACTAAA	-17	NA	20616523	20615976	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_20616000_20616500
transcript_35085.known	chr16	-	1064	2	FSM	ENSMUSG00000116922.2	ENSMUST00000231314.2	1064	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAAACACTTTGACCTT	194	False	NA	NA	False	AATAAA	-19	NA	20622135	20619041	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_20619837_20621866
transcript_35099.nnic	chr16	+	525	2	Antisense	novelGene_ENSMUSG00000099764.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	540	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAGGCAAATCTTAAAAGG	NA	False	NA	NA	False	NA	NA	NA	20640838	20641429	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr16_+_20640948_20641013
transcript_35102.nnic	chr16	-	468	2	Genic_Genomic	ENSMUSG00000099764.2	novel	496	1	NA	NA	-39	56	multi-exon	FALSE	canonical	0	0	junction_1	0	552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGCCTTGGTCATGGTG	NA	False	NA	NA	False	AATAAA	-27	NA	20641429	20640838	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr16_-_20640985_20641107
transcript_35105.known	chr16	-	496	1	FSM	ENSMUSG00000099764.2	ENSMUST00000127484.2	496	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25272	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTTGGAGTTTATGTTGT	NA	False	NA	NA	False	NA	NA	NA	20641390	20640894	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_20640900_20641400
transcript_35106.known	chr16	-	1346	1	FSM	ENSMUSG00000090356.3	ENSMUST00000170665.3	1346	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGTCAGTGTACTTCTGA	NA	False	NA	NA	False	NA	NA	NA	20972750	20971404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_20971400_20972800
transcript_35107.known	chr16	+	4185	16	FSM	ENSMUSG00000005958.16	ENSMUST00000006112.7	4185	16	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_8	11.1167541225945	190	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGCCCCTGCTCGTTCT	NA	False	NA	11	True	AATAAA	-14	NA	21023504	21042054	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_21024014_21031639_21031705_21033074_21033748_21035945_21036102_21036764_21037116_21037244_21037370_21037543_21037704_21037788_21037898_21038204_21038258_21039169_21039293_21039396_21039645_21040034_21040251_21040376_21040527_21040614_21040809_21040898_21041055_21041157
transcript_35108.known	chr16	-	1455	1	FSM	ENSMUSG00000116632.2	ENSMUST00000231504.2	1455	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTTGTGTTGCACAGTT	NA	False	NA	NA	False	AATAAA	-16	NA	21152106	21150651	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_21150700_21152100
transcript_35111.known	chr16	+	722	3	FSM	ENSMUSG00000033653.19	ENSMUST00000127903.2	722	3	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_1	94.5	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTCAGACCGCAGATGGGC	NA	False	NA	NA	False	NA	NA	NA	21446380	21463166	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_21446726_21459428_21459510_21462870
transcript_35113.known	chr16	-	1135	2	FSM	ENSMUSG00000043391.11	ENSMUST00000231592.2	1135	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGGGTCTCCTGTTTGCT	NA	False	NA	3	True	AATAAA	-30	NA	21513379	21495471	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_21496193_21512965
transcript_35114.known	chr16	-	2981	7	FSM	ENSMUSG00000022853.8	ENSMUST00000023559.7	2981	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	3.35410196624968	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCATTGTGTAAAAAACTG	NA	False	NA	NA	False	AATAAA	-19	NA	21606557	21580036	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_21582087_21584975_21585318_21589165_21589271_21592244_21592357_21594094_21594262_21596548_21596653_21606456
transcript_3512.nnic	chr1	+	495	2	Genic_Genomic	ENSMUSG00000081051.5	novel	531	1	NA	NA	-41	49	multi-exon	FALSE	canonical	0	0	junction_1	0	1564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAAAGGATGGA	NA	False	NA	NA	False	NA	NA	NA	95426304	95426925	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr1_+_95426544_95426669
transcript_35122.known	chr16	+	701	6	FSM	ENSMUSG00000097290.10	ENSMUST00000209728.2	701	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	55.544576692959	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAACTCAGAAAGTATTGT	NA	False	NA	NA	False	NA	NA	NA	21613105	21627570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_21613197_21614599_21614726_21619464_21619587_21620030_21620107_21621704_21621848_21627427
transcript_35124.nnic	chr16	+	995	6	NIC	ENSMUSG00000097290.10	novel	701	6	NA	NA	-30	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_4	51.1921869038626	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGGTTGAAAGGTCCATG	NA	False	NA	30	True	AATAAA	-35	NA	21613037	21627790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_+_21613197_21614599_21614726_21619464_21619587_21620030_21620107_21625720_21625870_21627427
transcript_35128.known	chr16	+	3557	5	FSM	ENSMUSG00000097290.10	ENSMUST00000180830.3	3557	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	55.9838146253004	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAGTTGTGGTGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	21613141	21624880	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_21613197_21614599_21614726_21619464_21619587_21620030_21620107_21621702
transcript_35130.nnic	chr16	+	826	5	NIC	ENSMUSG00000097290.10	novel	701	6	NA	NA	-30	-6	combination_of_known_splicesites	FALSE	canonical	3	8	junction_4	57.7164404654341	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGTCATGAAATTCTGGAAA	NA	False	NA	10	True	AATAAA	-15	NA	21613037	21627770	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_+_21613197_21614599_21614726_21619464_21619587_21620030_21620107_21627427
transcript_35132.known	chr16	+	1650	5	FSM	ENSMUSG00000097290.10	ENSMUST00000181780.9	1650	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	59.8289227715158	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGAGTGTGTATGTGT	NA	False	NA	NA	False	NA	NA	NA	21613096	21622988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_21613197_21614599_21614726_21619524_21619587_21620030_21620107_21621702
transcript_35140.nnic	chr16	+	830	4	NNC	ENSMUSG00000097290.10	novel	767	4	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	66.7449540331618	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGGTTGAAAGGTCCATG	NA	False	NA	30	True	AATAAA	-35	NA	21613037	21627790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_21613197_21614599_21614726_21625687_21625870_21627427
transcript_35141.known	chr16	+	767	4	FSM	ENSMUSG00000097290.10	ENSMUST00000211443.2	767	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	60.8896999134957	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGGTTGAAAGGTCCATG	NA	False	NA	30	True	AATAAA	-35	NA	21613067	21627790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_21613197_21614599_21614726_21625720_21625870_21627427
transcript_35142.known	chr16	+	574	3	FSM	ENSMUSG00000097290.10	ENSMUST00000181960.3	574	3	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_2	32	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGGTTGAAAGGTCCATG	NA	False	NA	30	True	AATAAA	-35	NA	21613111	21627790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_21613197_21614599_21614726_21627427
transcript_35145.known	chr16	+	609	2	FSM	ENSMUSG00000117327.2	ENSMUST00000232683.2	609	2	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	0	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGCTCTGGTCCCATCT	NA	False	NA	NA	False	NA	NA	NA	21715255	21715866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_21715682_21715683
transcript_35147.known	chr16	-	1360	5	FSM	ENSMUSG00000022856.10	ENSMUST00000023562.9	1360	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_1	14.1244468918255	780	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTGCAGGTTCTGAATGT	9190	False	NA	-2	True	ATTAAA	-16	NA	21766302	21753075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_21753796_21755730_21755870_21756682_21756845_21764750_21764905_21766117
transcript_35148.known	chr16	-	1184	4	FSM	ENSMUSG00000022856.10	ENSMUST00000232635.2	1184	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	70.6304938866115	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTGCAGGTTCTGAATG	9211	False	NA	-3	True	ATTAAA	-15	NA	21766281	21753076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_21753796_21755730_21755870_21756682_21756845_21766117
transcript_35149.known	chr16	-	2065	10	FSM	ENSMUSG00000044626.14	ENSMUST00000231682.2	2065	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	60.1727964457259	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGGGTTTGGCTCTTACGT	NA	False	NA	NA	False	NA	NA	NA	21814263	21774333	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_21774928_21777530_21777705_21780894_21781007_21784703_21784800_21786734_21786903_21792807_21792898_21794982_21795085_21800085_21800195_21802591_21803019_21814070
transcript_35151.known	chr16	+	4499	17	FSM	ENSMUSG00000022855.10	ENSMUST00000023561.8	4499	17	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_11	50.6099900587819	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGAGTGCTTTATGCTTGT	2202	False	NA	35	True	AGTAAA	-42	NA	21828233	21868019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_21828493_21830243_21830303_21832873_21833008_21834948_21835016_21837086_21837178_21842389_21842559_21845388_21845490_21846718_21846814_21847290_21847343_21850853_21850915_21855219_21855397_21857286_21857419_21859189_21859394_21860071_21860152_21861719_21861805_21862962_21863059_21865382
transcript_35155.known	chr16	+	2135	17	FSM	ENSMUSG00000022855.10	ENSMUST00000231724.2	2135	17	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	111.888616489793	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGCTTGAAACCCTGTTT	2230	False	NA	NA	False	NA	NA	NA	21828261	21865616	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_21828493_21830243_21830370_21832873_21833008_21834948_21835016_21837086_21837178_21842389_21842559_21845388_21845490_21846718_21846814_21847290_21847343_21850853_21850915_21855219_21855397_21857286_21857419_21859189_21859394_21860071_21860152_21861719_21861805_21862962_21863059_21865382
transcript_35158.known	chr16	+	1605	1	FSM	ENSMUSG00000022855.10	ENSMUST00000231408.2	1605	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAAGTCT	2253	False	NA	NA	False	NA	NA	NA	21828284	21829889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_21828300_21829900
transcript_35159.known	chr16	-	3899	16	FSM	ENSMUSG00000033581.18	ENSMUST00000100052.11	3899	16	0	0	0	0	multi-exon	FALSE	canonical	3	902	junction_2	81.6059366032208	176	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGTGTCTTGGTGTCTT	2273	False	NA	NA	False	AATATA	-16	NA	21982049	21877758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_21879636_21880609_21880724_21882331_21882464_21883842_21883918_21886892_21887010_21889056_21889126_21894766_21894896_21897365_21897502_21898233_21898357_21898816_21898952_21900483_21900736_21902673_21902738_21906277_21906330_21907811_21907861_21979995_21980057_21981535
transcript_35167.known	chr16	-	3403	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	0	0	0	0	multi-exon	TRUE	canonical	3	1235	junction_5	313.549014310363	5404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACATAATGAATACGTGTG	NA	False	NA	NA	False	AATAAA	-22	NA	22084755	22063298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
transcript_35168.known	chr16	-	1376	2	FSM	ENSMUSG00000022858.17	ENSMUST00000160579.2	1376	2	0	0	0	0	multi-exon	FALSE	canonical	3	646	junction_1	0	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGCTATGGCAAATTTAAA	NA	False	NA	NA	False	AATAAA	-13	NA	22084668	22076813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_22078012_22084490
transcript_35169.known	chr16	-	1687	10	FSM	ENSMUSG00000022858.17	ENSMUST00000162413.9	1687	10	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_8	660.884723143114	1454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTTTCTTTCTAAATATC	NA	False	NA	-20	True	AATAAA	-14	NA	22084676	22065211	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077735_22078012_22084490
transcript_35171.known	chr16	-	3975	13	FSM	ENSMUSG00000013089.16	ENSMUST00000079601.13	3975	13	0	0	0	0	multi-exon	TRUE	canonical	3	174	junction_9	424.638105724549	814	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGCAACCTGCCTCTTT	7486	False	NA	-13	True	AATAAA	-22	NA	22258469	22200058	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382_22230671_22231594_22231725_22254626_22254678_22254769_22254818_22254950_22255039_22255187_22255311_22258266
transcript_35180.nnic	chr16	-	883	6	NNC	ENSMUSG00000013089.16	novel	3975	13	NA	NA	-33	-12336	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	73.2628145787479	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCAATCTCCTTTGTTGTG	7556	False	NA	NA	False	NA	NA	NA	22258399	22244009	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_22244450_22254626_22254678_22254769_22254818_22254950_22255039_22255187_22255311_22258266
transcript_35187.known	chr16	+	497	2	FSM	ENSMUSG00000089874.2	ENSMUST00000159309.2	497	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAGGAAAACAGGAAGTGC	NA	False	NA	NA	False	AATAAA	-26	NA	22330229	22336431	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_22330290_22335994
transcript_35188.nnic	chr16	+	470	4	NNC	ENSMUSG00000089663.2	novel	2507	2	NA	NA	-261	-1559	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.24721912892465	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTTGTGACTGGTGTTG	NA	False	NA	NA	False	NA	NA	NA	22367041	22368340	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_22367125_22367243_22367331_22367420_22367502_22368121
transcript_3519.known	chr1	+	531	1	FSM	ENSMUSG00000081051.5	ENSMUST00000117288.2	531	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	180505	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACAGAGACCCACTGAATA	NA	False	NA	NA	False	NA	NA	NA	95426345	95426876	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_95426300_95426900
transcript_35190.nnic	chr16	+	1055	4	NNC	ENSMUSG00000089663.2	novel	2507	2	NA	NA	-323	-1036	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.24721912892465	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATTTTTAGCTAATGTAT	NA	False	NA	NA	False	AATAAA	-12	NA	22366979	22368863	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_22367125_22367243_22367331_22367420_22367502_22368121
transcript_35192.known	chr16	-	2803	8	FSM	ENSMUSG00000004462.8	ENSMUST00000004576.8	2803	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_7	24.7526539496479	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGCCAGAGTTGGTT	NA	False	NA	NA	False	AATAAA	-21	NA	22676419	22631963	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_22632707_22637130_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22676094
transcript_35193.known	chr16	-	2645	8	FSM	ENSMUSG00000004462.8	ENSMUST00000232075.2	2645	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_7	25.2214680179325	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTTTTACTGTGCCAGAG	NA	False	NA	NA	False	AATAAA	-15	NA	22676417	22631969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_22632707_22637130_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22676244
transcript_35197.nic	chr16	-	2476	7	ISM	ENSMUSG00000004462.8	ENSMUST00000232075.2	2645	8	-33	4626	-31	-433	5prime_fragment	FALSE	canonical	3	49	junction_6	23.3410701458942	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACATAGAGCATTATTAAT	NA	False	NA	NA	False	AATAAA	-18	NA	22676450	22636595	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_-_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22676244
transcript_35201.known	chr16	-	790	4	FSM	ENSMUSG00000004462.8	ENSMUST00000232251.2	790	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	44.1688678696759	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTTCTCATTGAAGGCAC	NA	False	NA	NA	False	NA	NA	NA	22675615	22644738	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_22644883_22652627_22652784_22660478_22660858_22675504
transcript_35202.known	chr16	-	1371	4	FSM	ENSMUSG00000004462.8	ENSMUST00000232681.2	1371	4	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	30.539591789457	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAATGCCTTTGTTAGGA	NA	False	NA	NA	False	NA	NA	NA	22676292	22644244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_22644883_22652627_22652784_22660478_22660858_22676094
transcript_35203.nic	chr16	-	1379	4	ISM	ENSMUSG00000004462.8	ENSMUST00000232075.2	2645	8	-33	12275	-31	0	5prime_fragment	FALSE	canonical	3	49	junction_3	31.4783876475414	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAATGCCTTTGTTAGGA	NA	False	NA	NA	False	NA	NA	NA	22676450	22644244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_-_22644883_22652627_22652784_22660478_22660858_22676244
transcript_35206.nic	chr16	-	940	3	ISM	ENSMUSG00000004462.8	ENSMUST00000232681.2	1371	4	-32	8208	-30	4629	5prime_fragment	FALSE	canonical	3	51	junction_2	30.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTTCTCCCCTCCTTAA	NA	False	NA	NA	False	NA	NA	NA	22676324	22652452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_-_22652784_22660478_22660858_22676094
transcript_35207.nic	chr16	-	916	3	ISM	ENSMUSG00000004462.8	ENSMUST00000232075.2	2645	8	-33	20483	-31	4629	5prime_fragment	FALSE	canonical	3	49	junction_2	31.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTTCTCCCCTCCTTAA	NA	False	NA	NA	False	NA	NA	NA	22676450	22652452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_-_22652784_22660478_22660858_22676244
transcript_3521.known	chr1	+	410	3	FSM	ENSMUSG00000097814.6	ENSMUST00000202118.2	410	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	4.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCTCCTACCAGCTGGTG	NA	False	NA	NA	False	NA	NA	NA	96799957	96805626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_96800116_96800209_96800394_96805558
transcript_35220.known	chr16	+	1927	10	FSM	ENSMUSG00000004460.18	ENSMUST00000004574.14	1927	10	0	0	0	0	multi-exon	FALSE	canonical	3	939	junction_3	70.1998909640038	1471	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTGTATCTGTCCAAG	NA	False	NA	30	True	AATAAA	-34	NA	22676594	22691138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_22676860_22681291_22681449_22684203_22684302_22685669_22685803_22687460_22687604_22687870_22687954_22688165_22688224_22689320_22689433_22689689_22689850_22690420
transcript_35221.known	chr16	-	1769	4	FSM	ENSMUSG00000116831.2	ENSMUST00000231692.2	1769	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6.59966329107444	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGGTAGTAACCCTAAATT	NA	False	NA	NA	False	ATTAAA	-23	NA	22713136	22693732	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_22695289_22702938_22702990_22705778_22705854_22713049
transcript_35227.known	chr16	+	1597	9	FSM	ENSMUSG00000022871.14	ENSMUST00000232097.2	1597	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	224.84435588869	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTCAACCTGTTGAC	NA	False	NA	14	True	AATAAA	-20	NA	22739065	22758507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_22739246_22740498_22740626_22747824_22748060_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
transcript_35229.known	chr16	+	1520	8	FSM	ENSMUSG00000022871.14	ENSMUST00000170805.9	1520	8	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	163.600059877241	779	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAACTGGAAATGAGACTAA	NA	False	NA	35	True	AATAAA	-41	NA	22737131	22758528	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_22737341_22747824_22748060_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
transcript_35233.known	chr16	+	1544	8	FSM	ENSMUSG00000022871.14	ENSMUST00000023587.12	1544	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	202.97702694982	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCTTGGCTTCAACCTG	NA	False	NA	9	True	AATAAA	-15	NA	22738986	22758502	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_22739246_22747824_22748060_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
transcript_35234.known	chr16	+	798	7	FSM	ENSMUSG00000022871.14	ENSMUST00000231880.2	798	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	173.937728320607	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGATGATGAGAAGCCCGA	NA	False	NA	NA	False	NA	NA	NA	22737248	22758154	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_22737345_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
transcript_35237.known	chr16	+	1094	7	FSM	ENSMUSG00000022871.14	ENSMUST00000116625.10	1094	7	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	171.730408877791	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCTTGGCTTCAACCTG	NA	False	NA	9	True	AATAAA	-15	NA	22739201	22758502	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_22739246_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
transcript_3524.known	chr1	+	3849	2	FSM	ENSMUSG00000097814.6	ENSMUST00000181489.3	3849	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAATCATCTCTATTATTT	NA	False	NA	5	True	NA	NA	NA	96799945	96808959	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_96800394_96805558
transcript_35243.nnic	chr16	+	1358	5	NNC	ENSMUSG00000022877.10	novel	1734	7	NA	NA	4719	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	3.08220700148449	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTAACTACTTTAACTTTG	NA	False	NA	NA	False	AATAAA	-28	NA	22774568	22780406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_22774662_22774789_22774957_22776216_22776298_22777910_22778013_22779491
transcript_35244.known	chr16	-	1577	11	FSM	ENSMUSG00000060459.15	ENSMUST00000115349.9	1577	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	3.1559467676119	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGGTCTCCTTTCAGCCA	9727	False	NA	NA	False	AATAAA	-21	NA	22847818	22804603	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_22804819_22806994_22807076_22815772_22815860_22815960_22816069_22818563_22818737_22819280_22819366_22822681_22822790_22830746_22830920_22843589_22843672_22845797_22845909_22847464
transcript_35249.known	chr16	+	570	1	FSM	ENSMUSG00000116637.2	ENSMUST00000231857.2	570	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	131	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACAGGGTCTTGGCAGCTG	NA	False	NA	NA	False	NA	NA	NA	22869031	22869601	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_22869000_22869600
transcript_3525.known	chr1	-	4908	13	FSM	ENSMUSG00000040693.8	ENSMUST00000071985.6	4908	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	6.53781733880318	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTTTTATTACTCTTTA	NA	False	NA	NA	False	ATTAAA	-18	NA	96799896	96743994	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_96746833_96748907_96749046_96751421_96751487_96756515_96756701_96759710_96759865_96764604_96764801_96765178_96765324_96766891_96767011_96768854_96768977_96770178_96770276_96772200_96772381_96795449_96795714_96799491
transcript_3526.known	chr1	-	40378	3	FSM	ENSMUSG00000044768.17	ENSMUST00000053033.14	40378	3	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_2	5.5	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATACATTTTTCTTTTTAT	NA	False	NA	NA	False	ATTAAA	-13	NA	97589799	97534042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_97574087_97582324_97582415_97589555
transcript_3528.known	chr1	+	2046	8	FSM	ENSMUSG00000026333.15	ENSMUST00000112844.10	2046	8	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	7.99744857273052	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACGAAACTTTATCTGTGA	NA	False	NA	NA	False	AATAAA	-26	NA	97697896	97720694	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_97697981_97703171_97703318_97705050_97705245_97710651_97710958_97712477_97712670_97712779_97712948_97713700_97713984_97720021
transcript_35280.known	chr16	-	1228	11	FSM	ENSMUSG00000022881.16	ENSMUST00000023598.15	1228	11	0	0	0	0	multi-exon	FALSE	canonical	2	1237	junction_10	165.436271718145	7871	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATATACAATTTTATTTA	NA	False	NA	-26	True	AATAAA	-23	NA	22946487	22932692	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_22932858_22932936_22933054_22933194_22933276_22933356_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22939658_22939739_22943285_22943365_22946149_22946292_22946434
transcript_35281.known	chr16	+	1965	12	FSM	ENSMUSG00000022884.17	ENSMUST00000123413.8	1965	12	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_11	605.093586095477	1697	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGTATATTCACTTTATAT	6072	False	NA	NA	False	AATAAA	-1	NA	22926526	22932680	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931208_22931916
transcript_35282.known	chr16	+	2708	11	FSM	ENSMUSG00000022884.17	ENSMUST00000077605.12	2708	11	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_10	433.482883168413	639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATAGGTGGTCTGGCCATT	6054	False	NA	NA	False	AATAAA	-17	NA	22926508	22932696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
transcript_35283.known	chr16	+	2208	11	FSM	ENSMUSG00000022884.17	ENSMUST00000023599.13	2208	11	0	0	0	0	multi-exon	FALSE	canonical	3	1278	junction_10	308.304135554488	9910	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	5739	False	NA	NA	False	AATAAA	-18	NA	22926193	22932697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
transcript_35284.known	chr16	+	1737	10	FSM	ENSMUSG00000022884.17	ENSMUST00000131871.8	1737	10	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_1	631.938131836603	5127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6073	False	NA	NA	False	AATAAA	-18	NA	22926527	22932697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_22926571_22927334_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
transcript_35285.known	chr16	+	1001	9	FSM	ENSMUSG00000022884.17	ENSMUST00000232287.2	1001	9	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_1	545.355847131027	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAAGCCGTGTTCTGATCA	6054	False	NA	NA	False	NA	NA	NA	22926508	22930308	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252
transcript_35286.known	chr16	-	1279	10	FSM	ENSMUSG00000022881.16	ENSMUST00000115338.8	1279	10	0	0	0	0	multi-exon	FALSE	canonical	2	1237	junction_9	172.55065457732	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATAAAGTGAATATACAAT	NA	False	NA	-34	True	AATAAA	-15	NA	22946467	22932700	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_22933054_22933194_22933276_22933356_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22939658_22939739_22943285_22943365_22946149_22946292_22946434
transcript_35287.known	chr16	+	1292	3	FSM	ENSMUSG00000022878.6	ENSMUST00000023593.6	1292	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCAGGGTACAGTCTGTTC	3988	False	NA	NA	False	ATTAAA	-20	NA	22965285	22976778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_22965392_22973966_22974198_22975823
transcript_35293.known	chr16	+	1158	3	FSM	ENSMUSG00000033355.7	ENSMUST00000210901.2	1158	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCACCTGTGCTATGAGAT	NA	False	NA	NA	False	AATAAA	-18	NA	23427806	23432486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_23427888_23428678_23428900_23431630
transcript_35299.nnic	chr16	-	856	3	NNC	ENSMUSG00000004366.5	novel	721	2	NA	NA	-10525	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGTTTGACTTCTTATTGAG	NA	False	NA	2	True	AATAAA	-26	NA	23720233	23708322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_23708692_23709356_23709773_23720162
transcript_35300.known	chr16	-	721	2	FSM	ENSMUSG00000004366.5	ENSMUST00000004480.5	721	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGTTTGACTTCTTATTGAG	NA	False	NA	2	True	AATAAA	-26	NA	23709708	23708322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_23708692_23709356
transcript_35301.nnic	chr16	-	847	2	Antisense	novelGene_ENSMUSG00000033306.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	4	junction_1	0	14	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGGTTTGGATATTTTG	4109	False	NA	NA	False	AATAAA	-20	NA	24212403	24211305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr16_-_24211858_24212108
transcript_35308.known	chr16	+	2793	3	FSM	ENSMUSG00000096960.2	ENSMUST00000181655.2	2793	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCACAGTTTCTATTCATC	NA	False	NA	NA	False	NA	NA	NA	24878388	24887808	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_24878554_24883462_24883588_24885305
transcript_35309.known	chr16	+	2306	8	FSM	ENSMUSG00000022514.15	ENSMUST00000174202.8	2306	8	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_5	3.88087934491604	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTTTCGTAGCATTAATTG	NA	False	NA	NA	False	AATAAA	-22	NA	26400502	26521106	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_26400637_26442904_26442970_26495458_26495745_26498852_26499040_26511494_26511661_26513971_26514044_26517576_26517704_26519837
transcript_3531.nic	chr1	+	1643	8	NIC	ENSMUSG00000026333.15	novel	2046	8	NA	NA	-11	-203	combination_of_known_junctions	FALSE	canonical	2	3	junction_3	18.8148877222268	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCATGCGTAGAATTCAGA	NA	False	NA	NA	False	AATAAA	-18	NA	97697885	97720491	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_97697981_97703171_97703318_97705050_97705245_97710862_97710958_97712477_97712670_97712779_97712948_97713700_97713984_97720021
transcript_35310.known	chr16	+	1779	12	FSM	ENSMUSG00000038127.16	ENSMUST00000239351.2	1779	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	41.9986225669445	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTGCCATTCTGGGAG	NA	False	NA	NA	False	NA	NA	NA	27207618	27265133	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_27207888_27224396_27224460_27225400_27225528_27228073_27228165_27235997_27236116_27240442_27240968_27254311_27254428_27255117_27255163_27255247_27255353_27257050_27257128_27263293_27263401_27264997
transcript_35311.known	chr16	+	7089	11	FSM	ENSMUSG00000038127.16	ENSMUST00000100026.10	7089	11	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_6	12.5415310070182	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGGCCTACTGTTTTCAT	NA	False	NA	13	True	AATAAA	-22	NA	27207618	27270968	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_27207888_27224396_27224460_27225400_27225528_27228073_27228165_27235997_27236116_27254311_27254428_27255117_27255163_27255247_27255353_27257050_27257128_27263293_27263401_27264997
transcript_35318.known	chr16	+	1096	10	FSM	ENSMUSG00000038127.16	ENSMUST00000096127.11	1096	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	35.7473991111224	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGTGTGCCATTCTGGG	NA	False	NA	NA	False	NA	NA	NA	27207729	27265131	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_27207888_27224396_27224460_27225400_27225528_27228073_27228165_27235997_27236116_27254311_27254428_27255247_27255353_27257050_27257128_27263293_27263401_27264997
transcript_35324.known	chr16	-	3055	2	FSM	ENSMUSG00000051065.10	ENSMUST00000100023.3	3055	2	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTTGTCATTATTACTT	4797	False	NA	0	True	AATAAA	-24	NA	28748425	28644927	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_28647762_28748204
transcript_35327.nic	chr16	+	3394	31	NIC	ENSMUSG00000038084.17	novel	3230	30	NA	NA	-4	0	combination_of_known_junctions	TRUE	canonical	3	139	junction_4	92.8546295142155	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACGTGTGTTCCAGGCAC	NA	False	NA	9	True	AATAAA	-19	NA	29398147	29470697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29407640_29407695_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
transcript_35328.known	chr16	+	3230	30	FSM	ENSMUSG00000038084.17	ENSMUST00000038867.13	3230	30	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_4	99.4304230950511	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTACGTGTGTTCCAGG	NA	False	NA	6	True	AATAAA	-16	NA	29398197	29470694	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29407640_29407695_29408498_29408567_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
transcript_35329.nic	chr16	+	3340	30	NIC	ENSMUSG00000038084.17	novel	3230	30	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	253	junction_5	68.2954691456644	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACGTGTGTTCCAGGCAC	NA	False	NA	9	True	AATAAA	-19	NA	29398147	29470697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
transcript_3533.known	chr1	+	2494	8	FSM	ENSMUSG00000026333.15	ENSMUST00000027571.13	2494	8	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	17.1939714162035	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGCATGTCCTTCTTG	NA	False	NA	NA	False	NA	NA	NA	97697921	97721434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_97697981_97703171_97703318_97705050_97705245_97710918_97710958_97712477_97712670_97712779_97712948_97713700_97713984_97720021
transcript_35331.known	chr16	+	6230	29	FSM	ENSMUSG00000038084.17	ENSMUST00000160597.8	6230	29	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_5	76.2263931339013	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGCTTTCTCCCTACACT	NA	False	NA	NA	False	NA	NA	NA	29398151	29473702	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29408498_29408567_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
transcript_35335.known	chr16	-	503	2	FSM	ENSMUSG00000116891.2	ENSMUST00000232318.2	503	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCCAGGGAATGGCACTAT	NA	False	NA	NA	False	NA	NA	NA	29653546	29648273	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_29648617_29653386
transcript_35341.nnic	chr16	-	692	3	NIC	ENSMUSG00000097313.3	novel	1789	4	NA	NA	55	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	2	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGGACAGCTTTCCTTCT	NA	False	NA	NA	False	AATAAA	-23	NA	29765517	29726336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_-_29726669_29727207_29727322_29765271
transcript_35342.known	chr16	-	2375	1	FSM	ENSMUSG00000097313.3	ENSMUST00000232356.2	2375	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGGG	NA	False	NA	NA	False	NA	NA	NA	29765572	29763197	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_29763200_29765600
transcript_35343.known	chr16	-	699	4	FSM	ENSMUSG00000097313.3	ENSMUST00000232297.2	699	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	42.7109145561439	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCATCAGGACAGCTTTC	NA	False	NA	NA	False	AATAAA	-18	NA	29765334	29726341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_29726669_29727207_29727322_29757690_29757886_29765271
transcript_35346.known	chr16	+	2428	3	FSM	ENSMUSG00000097184.3	ENSMUST00000181485.3	2428	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	2	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGTATGTAGTATATCATA	NA	False	NA	NA	False	NA	NA	NA	29827484	29840248	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_29827549_29835374_29835462_29837971
transcript_35347.nnic	chr16	+	490	3	NNC	ENSMUSG00000097184.3	novel	2428	3	NA	NA	-61	-2008	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTCTTGAGTGCTTTGTT	NA	False	NA	NA	False	NA	NA	NA	29827423	29838240	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_29827549_29835374_29835471_29837971
transcript_35349.nnic	chr16	+	528	3	NNC	ENSMUSG00000097184.3	novel	2428	3	NA	NA	297	-2008	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_2	1	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTCTTGAGTGCTTTGTT	NA	False	NA	NA	False	NA	NA	NA	29827781	29838240	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_29827954_29835374_29835462_29837971
transcript_35351.nnic	chr16	-	1321	5	NNC	ENSMUSG00000116660.2	novel	1209	4	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	1.08972473588517	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTGTGAGTGATGATTGT	NA	False	NA	NA	False	AGTAAA	-19	NA	29858315	29840659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_29841398_29845162_29845267_29851254_29851376_29857304_29857446_29858098
transcript_35354.nnic	chr16	-	583	4	NNC	ENSMUSG00000116660.2	novel	1209	4	NA	NA	132	28986	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	1.24721912892465	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTCTTCCCATGTTTTT	NA	False	NA	NA	False	AATAAA	-13	NA	29858165	29811673	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_29811923_29841271_29841398_29857304_29857446_29858098
transcript_35356.known	chr16	-	1209	4	FSM	ENSMUSG00000116660.2	ENSMUST00000232465.2	1209	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.69967317119759	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTGTGAGTGATGATTGT	NA	False	NA	NA	False	AGTAAA	-19	NA	29858297	29840659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_29841398_29845162_29845294_29857304_29857446_29858098
transcript_35365.known	chr16	+	344	3	FSM	ENSMUSG00000022528.9	ENSMUST00000160592.3	344	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACGAAAATGCCAGCTG	NA	False	NA	NA	False	AATAAA	-32	NA	29883201	29884398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_29883355_29883462_29883608_29884352
transcript_35366.known	chr16	+	1468	4	FSM	ENSMUSG00000022528.9	ENSMUST00000023171.8	1468	4	0	0	0	0	multi-exon	FALSE	canonical	3	729	junction_2	50.3388517946129	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTTAGAACTGATTATTT	NA	False	NA	16	True	AATAAA	-17	NA	29884157	29886614	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_29884517_29884648_29884745_29884980_29885069_29885689
transcript_35370.known	chr16	-	5310	2	FSM	ENSMUSG00000052316.10	ENSMUST00000064606.8	5310	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTGTGTTCTCTGTGGAC	NA	False	NA	-1	True	AATAAA	-15	NA	30102074	30088119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_30093341_30101985
transcript_35371.nic	chr16	-	2170	11	NIC	ENSMUSG00000022537.19	novel	2505	12	NA	NA	-7	4	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	5.46260011349907	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGTCTCACGGTGGAGAACA	NA	False	NA	NA	False	AATAAA	-22	NA	30369403	30332783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_-_30333641_30337117_30337151_30348229_30348389_30356271_30356377_30358206_30358357_30359556_30359728_30362219_30362307_30362494_30362659_30363943_30364038_30366160_30366288_30369180
transcript_35372.known	chr16	-	2405	10	FSM	ENSMUSG00000022537.19	ENSMUST00000140402.8	2405	10	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	4.30618275001691	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGGCTCTCGGCTCTCTT	NA	False	NA	NA	False	NA	NA	NA	30369396	30332508	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_30333641_30348229_30348389_30356271_30356377_30358206_30358357_30359556_30359728_30362219_30362307_30362494_30362659_30363943_30364038_30366160_30366288_30369180
transcript_35375.nnic	chr16	+	1804	3	Antisense	novelGene_ENSMUSG00000022537.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	1.5	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAATAAAATAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	30320082	30349343	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr16_+_30320237_30344697_30344975_30347970
transcript_35378.nnic	chr16	+	359	2	Antisense	novelGene_ENSMUSG00000022537.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAACTGTGGAGTGCCTGG	NA	False	NA	NA	False	AATAGA	-17	NA	30359914	30360922	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr16_+_30360065_30360713
transcript_35389.known	chr16	-	3180	14	FSM	ENSMUSG00000022538.21	ENSMUST00000117363.9	3180	14	0	0	0	0	multi-exon	FALSE	canonical	2	298	junction_4	64.525303508774	610	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTCACAGTTAAGAAGGCT	NA	False	NA	NA	False	ATTAAA	-19	NA	30406410	30379311	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_30380681_30383463_30383638_30384247_30384328_30386528_30386653_30387922_30388067_30388146_30388249_30389982_30390355_30392010_30392188_30393363_30393425_30399776_30399864_30400873_30400961_30401348_30401470_30404371_30404499_30406255
transcript_354.known	SIRV5	+	2474	18	FSM	SIRV5A	SIRV510	2474	18	0	0	0	0	multi-exon	FALSE	canonical	3	1532	junction_17	2924.81329602575	1559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAGTAACCTTGGTAACT	NA	False	NA	NA	False	AGTAAA	-11	NA	1028	11867	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858_10992_11133
transcript_35406.known	chr16	-	692	7	FSM	ENSMUSG00000022538.21	ENSMUST00000128561.8	692	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	193.560283460563	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCAGACTTGCTGACTGC	NA	False	NA	NA	False	GATAAA	-2	NA	30406392	30392133	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_30392188_30393363_30393425_30399776_30399864_30400873_30400979_30401348_30401470_30404371_30404499_30406255
transcript_35408.nic	chr16	-	764	6	ISM	ENSMUSG00000022538.21	ENSMUST00000144666.8	2724	11	-5	9803	-5	4437	5prime_fragment	FALSE	canonical	3	26	junction_1	195.314105993397	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTAAATAGCTTAAAGGTA	NA	False	NA	NA	False	NA	NA	NA	30406415	30396633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_-_30396816_30399776_30399864_30400873_30400961_30401348_30401470_30404371_30404499_30406255
transcript_35409.nic	chr16	-	677	6	ISM	ENSMUSG00000022538.21	ENSMUST00000144666.8	2724	11	-1	9886	-1	4354	5prime_fragment	FALSE	canonical	3	26	junction_1	195.314105993397	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATAGCCTTAATGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	30406411	30396716	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_-_30396816_30399776_30399864_30400873_30400961_30401348_30401470_30404371_30404499_30406255
transcript_35412.known	chr16	-	2724	11	FSM	ENSMUSG00000022538.21	ENSMUST00000144666.8	2724	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_6	184.063684631162	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCAGTTTGGTCTGTTATT	NA	False	NA	NA	False	NA	NA	NA	30406410	30386830	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_30388067_30388146_30388249_30389982_30390355_30392010_30392188_30393363_30393425_30396616_30396816_30399776_30399864_30400873_30400961_30401348_30401470_30404371_30404499_30406255
transcript_35413.known	chr16	+	3075	1	FSM	ENSMUSG00000046546.4	ENSMUST00000059078.4	3075	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	282	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGAGCCTCTGGAAATGCT	NA	False	NA	92	True	AATAAA	-23	NA	30418540	30421615	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_30418500_30421600
transcript_3542.known	chr1	+	1037	3	FSM	ENSMUSG00000026333.15	ENSMUST00000112842.8	1037	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	10	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAGAGAAAGGAAGGAAAGA	NA	False	NA	NA	False	NA	NA	NA	97697903	97705864	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_97697981_97703171_97703318_97705050
transcript_35427.known	chr16	-	4078	6	FSM	ENSMUSG00000047714.15	ENSMUST00000060188.14	4078	6	0	0	0	0	multi-exon	FALSE	canonical	3	769	junction_1	115.541161496672	591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTTTCTTTTTAATTA	NA	False	NA	3	True	ATTAAA	-28	NA	31094095	31070354	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_31073552_31077154_31077323_31079391_31079487_31080047_31080126_31084122_31084231_31093663
transcript_35428.known	chr16	-	958	5	FSM	ENSMUSG00000047714.15	ENSMUST00000115233.2	958	5	0	0	0	0	multi-exon	FALSE	canonical	3	993	junction_1	34.2746261832277	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTTGCTTTGTTTTTTG	NA	False	NA	73	True	ATTAAA	-38	NA	31093810	31076792	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_31077323_31079391_31079487_31080047_31080126_31084122_31084231_31093663
transcript_3543.known	chr1	+	517	2	FSM	ENSMUSG00000026333.15	ENSMUST00000122925.2	517	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCCACAATCCTGTGTTTA	NA	False	NA	NA	False	ATTAAA	-29	NA	97697925	97698730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_97697981_97698268
transcript_35432.known	chr16	-	2074	6	FSM	ENSMUSG00000022548.15	ENSMUST00000130560.8	2074	6	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_5	47.7887015935775	669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGTAGCTTCCAGTTT	8496	False	NA	NA	False	NA	NA	NA	31133626	31115009	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_31116395_31119212_31119302_31122227_31122350_31129831_31129983_31133216_31133287_31133369
transcript_35437.known	chr16	-	979	5	FSM	ENSMUSG00000022548.15	ENSMUST00000023207.15	979	5	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_4	27.2614654778499	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTTGCTAGCCCAATAAT	8710	False	NA	-38	True	NA	NA	NA	31133412	31115973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_31116395_31119212_31119302_31122227_31122350_31129831_31129983_31133216
transcript_35438.known	chr16	-	1070	5	FSM	ENSMUSG00000022548.15	ENSMUST00000115230.2	1070	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	68.1725751310598	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTGTGTTTCCTGTGGA	8500	False	NA	-4	True	AATAAA	-12	NA	31133622	31115939	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_31116395_31119212_31119302_31122227_31122350_31129831_31129983_31133369
transcript_35443.nnic	chr16	-	903	3	NNC	ENSMUSG00000022548.15	novel	1070	5	NA	NA	2021	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_2	75	135	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTGTGTTTCCTGTGGA	NA	False	NA	-4	True	AATAAA	-12	NA	31120242	31115939	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_31116395_31119212_31119302_31119883
transcript_35444.known	chr16	-	362	2	FSM	ENSMUSG00000022548.15	ENSMUST00000145837.2	362	2	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATCCCAGCGAGCTTTGA	NA	False	NA	NA	False	NA	NA	NA	31130166	31122322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_31122350_31129831
transcript_35446.known	chr16	+	1711	7	FSM	ENSMUSG00000046598.16	ENSMUST00000089759.9	1711	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	185.763888369678	1927	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTCTTGTGTGCATGAAA	5509	False	NA	25	True	AGTAAA	-15	NA	31241097	31276315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_31241331_31256809_31256936_31265409_31265483_31266370_31266482_31268641_31268784_31273845_31273999_31275442
transcript_35451.known	chr16	+	3122	7	FSM	ENSMUSG00000046598.16	ENSMUST00000115227.10	3122	7	0	0	0	0	multi-exon	FALSE	canonical	3	475	junction_4	18.4812217008388	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGCAGAGTGGCTTGGAAT	NA	False	NA	17	True	AATAAA	-17	NA	31247565	31277719	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_31247806_31256809_31256936_31265409_31265483_31266370_31266482_31268641_31268784_31273845_31273999_31275442
transcript_35458.known	chr16	-	1901	1	FSM	ENSMUSG00000086645.3	ENSMUST00000182690.2	1901	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTGTCACATGACTTTAAT	NA	False	NA	NA	False	AATAAA	-14	NA	31248594	31246693	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_31246700_31248600
transcript_35468.known	chr16	+	322	2	FSM	ENSMUSG00000045625.6	ENSMUST00000134666.3	322	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGGCTCACCCTCTTTTT	5903	False	NA	NA	False	NA	NA	NA	31760730	31761441	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_31760925_31761313
transcript_35469.known	chr16	-	1445	1	FSM	ENSMUSG00000107002.2	ENSMUST00000202722.2	1445	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGCTTCTTGGTCATGAT	NA	False	NA	NA	False	NA	NA	NA	31767312	31765867	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_31765900_31767300
transcript_35470.known	chr16	-	6332	10	FSM	ENSMUSG00000022772.13	ENSMUST00000231360.2	6332	10	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_4	8.64670064815276	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGTTCTGTTGTGTTTA	NA	False	NA	NA	False	AATAAA	-18	NA	31822105	31778489	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_31782356_31783087_31783139_31784562_31784647_31787617_31787756_31796497_31796576_31802081_31802130_31802310_31802450_31802585_31802692_31807757_31809284_31821809
transcript_35477.known	chr16	-	2804	6	FSM	ENSMUSG00000022772.13	ENSMUST00000144320.2	2804	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	7.08801805866774	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGGCCAGCCAGGACTTT	NA	False	NA	NA	False	NA	NA	NA	31821996	31795777	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_31796576_31802081_31802130_31802310_31802450_31802585_31802692_31807757_31809284_31821809
transcript_3548.known	chr1	+	2858	2	FSM	ENSMUSG00000067017.6	ENSMUST00000086725.6	2858	2	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	0	192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTATCCATGCCACACTG	NA	False	NA	NA	False	AATAAA	-29	NA	105383695	105386554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_105384509_105384509
transcript_35482.known	chr16	+	391	4	FSM	ENSMUSG00000022774.14	ENSMUST00000115178.3	391	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	202.040150025242	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCAGTGTCTCTGCTGTAC	NA	False	NA	-56	True	NA	NA	NA	31767463	31775903	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_31767546_31772942_31772983_31775125_31775248_31775756
transcript_35484.known	chr16	+	2070	4	FSM	ENSMUSG00000022774.14	ENSMUST00000023460.7	2070	4	0	0	0	0	multi-exon	FALSE	canonical	3	415	junction_1	12.2565175405668	1754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTGTCTATTTCCTCGC	NA	False	NA	4	True	AATAAA	-15	NA	31767330	31777290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_31767546_31772942_31773125_31775108_31775248_31775756
transcript_35488.known	chr16	+	762	4	FSM	ENSMUSG00000022774.14	ENSMUST00000140965.8	762	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	195.632876128278	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCCAAAGAACGCCTTTAAC	NA	False	NA	7	True	ATTAAA	-8	NA	31767418	31775966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_31767546_31772942_31773125_31775108_31775248_31775652
transcript_35489.known	chr16	-	5741	15	FSM	ENSMUSG00000022781.9	ENSMUST00000023467.9	5741	15	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_8	23.9404021925877	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAATTTCCATTTTTGTC	NA	False	NA	-10	True	AATAAA	-22	NA	31898160	31835107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_31839085_31840591_31840730_31841906_31842104_31846529_31846630_31850401_31850520_31852604_31852718_31853712_31853762_31856062_31856127_31858616_31858750_31860285_31860394_31861963_31861996_31862670_31862819_31863298_31863400_31870993_31871202_31897905
transcript_35490.nnic	chr16	-	747	3	NNC	ENSMUSG00000022781.9	novel	5741	15	NA	NA	-7	-17077	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	121.5	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTGTTCTTATTGTTCAG	NA	False	NA	NA	False	NA	NA	NA	31898167	31868979	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_31869257_31870993_31871202_31897905
transcript_35502.nnic	chr16	-	957	5	NIC	ENSMUSG00000023791.19	novel	993	6	NA	NA	-22	0	combination_of_known_splicesites	FALSE	canonical	3	30	junction_4	167.537309277665	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGGTTAGTTTGTCTT	NA	False	NA	-4	True	AATAAA	-26	NA	31918580	31903237	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31918287
transcript_35510.known	chr16	-	818	6	FSM	ENSMUSG00000023791.19	ENSMUST00000232321.2	818	6	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_5	141.720287891325	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTAGTTTGTCTTCATT	NA	False	NA	0	True	AATAAA	-30	NA	31918558	31903233	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31915817_31915882_31918472
transcript_35511.known	chr16	-	713	5	FSM	ENSMUSG00000023791.19	ENSMUST00000147688.8	713	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	176.233332545237	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAACCTAATAAATGAGAC	NA	False	NA	-43	True	NA	NA	NA	31918525	31903276	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_31903445_31904054_31904156_31911161_31911304_31915817_31915882_31918287
transcript_35512.known	chr16	-	675	4	FSM	ENSMUSG00000023791.19	ENSMUST00000143011.8	675	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	202.902822936389	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTAACTGGTTAGTTTG	NA	False	NA	-8	True	AATAAA	-22	NA	31918522	31903241	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_31903445_31904054_31904156_31911161_31911304_31918293
transcript_35513.known	chr16	-	963	6	FSM	ENSMUSG00000023791.19	ENSMUST00000155966.8	963	6	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_5	129.408500493592	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGCTCTTTTCAGAACT	NA	False	NA	-22	True	AATAAA	-8	NA	31918546	31903255	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31915817_31915882_31918293
transcript_35514.known	chr16	+	1718	4	FSM	ENSMUSG00000035790.16	ENSMUST00000115168.9	1718	4	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_3	4.96655480858378	432	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGCTTTTCTTCAGTCTG	6492	False	NA	26	True	AATAAA	-26	NA	31918617	31926887	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_31918930_31921784_31921863_31922701_31922866_31925723
transcript_35516.known	chr16	-	2548	3	FSM	ENSMUSG00000052384.15	ENSMUST00000099991.11	2548	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	2.5	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATCTTGTGTAATGTCCT	NA	False	NA	NA	False	AATAAA	-33	NA	31984403	31961602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_31963824_31966370_31966492_31984197
transcript_35517.known	chr16	-	4179	3	FSM	ENSMUSG00000035764.6	ENSMUST00000042732.6	4179	3	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_2	4	160	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTGGTAGTCCATGTCA	7823	False	NA	2	True	ATTAAA	-17	NA	32065976	32048929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_32052087_32057217_32057575_32065311
transcript_35519.known	chr16	+	1394	3	FSM	ENSMUSG00000022787.11	ENSMUST00000023474.4	1394	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	52	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTAATTTTGGTTTTTTTT	NA	False	NA	18	True	AATAAA	-19	NA	32066070	32075901	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_32066344_32070640_32071137_32075276
transcript_35522.known	chr16	+	1153	3	FSM	ENSMUSG00000022787.11	ENSMUST00000178573.8	1153	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	36.5	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACCAACAGTAATTTTG	NA	False	NA	9	True	AATAAA	-10	NA	32066044	32075892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_32066086_32070640_32071137_32075276
transcript_35524.known	chr16	+	4460	6	FSM	ENSMUSG00000014074.18	ENSMUST00000171474.2	4460	6	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_5	6.9108610172684	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAATTGGCTCTCATG	NA	False	NA	NA	False	ATTAAA	-10	NA	32096278	32120252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_32097234_32101128_32101206_32104187_32104368_32107936_32108059_32110720_32110800_32117205
transcript_35527.nic	chr16	+	1302	4	ISM	ENSMUSG00000014074.18	ENSMUST00000014218.15	3932	6	-4	11702	-2	10	5prime_fragment	TRUE	canonical	3	16	junction_3	3.09120616516523	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TACAAGTAAACAAAAAACCT	NA	False	NA	NA	False	AAGAAA	-3	NA	32096274	32108022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_+_32097234_32101128_32101206_32104187_32104368_32107936
transcript_35529.known	chr16	+	1249	4	FSM	ENSMUSG00000014074.18	ENSMUST00000155649.8	1249	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	10.6144555520604	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAGAAAAATACAAGTAAA	NA	False	NA	NA	False	NA	NA	NA	32096276	32108012	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_32097234_32101128_32101206_32104187_32104368_32107977
transcript_35531.known	chr16	+	10313	11	FSM	ENSMUSG00000053774.10	ENSMUST00000115151.5	10313	11	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_8	18.7480665669823	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTTTTGAGTCATTGTT	8252	False	NA	16	True	AATAAA	-18	NA	32151074	32212565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_32151179_32171616_32171765_32178825_32178894_32186161_32186228_32188132_32188246_32191211_32191359_32194044_32194136_32194714_32194843_32200079_32200474_32200583_32200664_32203591
transcript_35536.known	chr16	+	4384	10	FSM	ENSMUSG00000053774.10	ENSMUST00000232137.2	4384	10	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	51.2071561357021	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTTGCCTTGTGTGCTGT	8263	False	NA	NA	False	NA	NA	NA	32151085	32206713	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_32151179_32171616_32171765_32178825_32178894_32188132_32188246_32191211_32191359_32194044_32194136_32194714_32194843_32200079_32200474_32200583_32200664_32203591
transcript_3555.nic	chr1	-	1499	12	ISM	ENSMUSG00000056536.15	ENSMUST00000190811.7	3015	26	-31	83799	-16	6024	5prime_fragment	TRUE	canonical	3	56	junction_9	9.63979355768114	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTCCAATCTGTAGTTA	NA	False	NA	NA	False	AATAAA	-18	NA	105591418	105568329	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_105568450_105572203_105572245_105574422_105574540_105575833_105575965_105577007_105577133_105580828_105580936_105583658_105583758_105584390_105584513_105585326_105585576_105586611_105586732_105587017_105587092_105591224
transcript_35552.known	chr16	+	838	5	FSM	ENSMUSG00000014075.16	ENSMUST00000014220.15	838	5	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_3	20.9568008054665	2780	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCATGAATAGTTTTTATG	NA	False	NA	9	True	AATAAA	-21	NA	32238519	32247917	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_32238746_32241637_32241772_32244058_32244129_32245675_32245740_32247573
transcript_35553.known	chr16	+	720	4	FSM	ENSMUSG00000014075.16	ENSMUST00000080316.8	720	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	127.027556065603	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATGTCATGAATAGTTTT	NA	False	NA	5	True	AATAAA	-17	NA	32238563	32247913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_32238746_32241637_32241772_32245675_32245740_32247573
transcript_35554.known	chr16	+	4789	9	FSM	ENSMUSG00000005615.16	ENSMUST00000079791.11	4789	9	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	11.3880419739304	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTCCTGTGGTTTTGACC	2489	False	NA	22	True	AATAAA	-27	NA	32249741	32293888	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_32249850_32270522_32270650_32274029_32274130_32280818_32280936_32281848_32282001_32285257_32285337_32285895_32286039_32288868_32289058_32290114
transcript_35556.known	chr16	-	2618	9	FSM	ENSMUSG00000035699.9	ENSMUST00000042042.9	2618	9	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_3	5.50993421013355	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTCTTTGAACTGTGT	NA	False	NA	NA	False	TTTAAA	-34	NA	32306697	32293321	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_32294697_32295190_32295297_32295984_32296132_32296365_32296478_32297122_32297282_32297533_32297608_32298467_32298623_32304952_32305048_32306302
transcript_35560.known	chr16	-	1349	8	FSM	ENSMUSG00000035699.9	ENSMUST00000231690.2	1349	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	14.3370506174793	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACACTGCTTCTGTTGGC	NA	False	NA	-8	True	AATAAA	-27	NA	32306521	32294340	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_32294697_32295190_32295297_32295984_32296132_32296365_32296478_32297122_32297282_32298467_32298623_32304952_32305048_32306302
transcript_35562.nnic	chr16	-	974	3	NNC	ENSMUSG00000035699.9	novel	2618	9	NA	NA	-167	-6134	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	20	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTTGTTTTGAAAAGATCCA	NA	False	NA	NA	False	AATAAA	-15	NA	32306864	32301538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_32301856_32304952_32305048_32306302
transcript_35566.nic	chr16	+	722	4	NIC	ENSMUSG00000052363.9	novel	1323	9	NA	NA	-1439	1511	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	0.471404520791032	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGCTTGTTATTTTGTTT	4447	False	NA	NA	False	NA	NA	NA	32316989	32319816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_+_32317270_32317792_32317966_32318438_32318545_32319653
transcript_35567.known	chr16	+	1207	2	FSM	ENSMUSG00000116957.2	ENSMUST00000231549.2	1207	2	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAATAAATAAATCTTTAA	NA	False	NA	NA	False	NA	NA	NA	32369028	32372526	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_32369240_32371530
transcript_35570.known	chr16	+	4890	19	FSM	ENSMUSG00000022797.17	ENSMUST00000023486.15	4890	19	0	0	0	0	multi-exon	FALSE	canonical	3	399	junction_9	25.3592094942417	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTCGGACTCATTTCATA	7957	False	NA	18	True	AATAAA	-19	NA	32427737	32451612	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_32427855_32431985_32432045_32433383_32433586_32434010_32434213_32435566_32435717_32435914_32436018_32437035_32437150_32437450_32437550_32437854_32437995_32439183_32439342_32439992_32440116_32441874_32441961_32442189_32442254_32443186_32443255_32443585_32443645_32443801_32443884_32445366_32445589_32447293_32447435_32448911
transcript_35571.known	chr16	+	1860	13	FSM	ENSMUSG00000022797.17	ENSMUST00000120680.2	1860	13	0	0	0	0	multi-exon	FALSE	canonical	3	399	junction_9	26.6958174002346	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACCTGCGTTTCCTTCGGT	8020	False	NA	NA	False	NA	NA	NA	32427800	32442559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_32427855_32431985_32432045_32433383_32433586_32434010_32434213_32435566_32435717_32435914_32436018_32437035_32437150_32437450_32437550_32437854_32437995_32439183_32439342_32439992_32440116_32441874_32441961_32442189
transcript_35573.known	chr16	-	679	4	FSM	ENSMUSG00000094430.3	ENSMUST00000179384.3	679	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACACTTGGCTCGTAATAT	NA	False	NA	NA	False	CATAAA	-11	NA	32630847	32625129	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_32625415_32626569_32626665_32627030_32627226_32630743
transcript_35574.known	chr16	-	5257	19	FSM	ENSMUSG00000035629.20	ENSMUST00000040986.15	5257	19	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_16	7.31732258934531	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGCCTTTTATTTACCTG	NA	False	NA	-35	True	AATAAA	-15	NA	32688721	32642097	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_32644517_32644748_32644843_32645933_32646088_32646504_32646567_32647054_32647294_32647657_32647723_32648228_32648375_32649038_32649172_32649634_32649693_32656283_32656386_32656779_32656991_32658607_32658724_32663367_32663902_32664916_32665077_32667586_32667694_32668199_32668360_32670047_32670132_32677261_32677416_32688462
transcript_35577.known	chr16	+	4312	9	FSM	ENSMUSG00000022800.15	ENSMUST00000023489.11	4312	9	0	0	0	0	multi-exon	FALSE	canonical	3	485	junction_4	65.3632876697615	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACAAAGAATTCCATATAT	NA	False	NA	NA	False	ATTAAA	-14	NA	32698150	32729245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_32698367_32704493_32704623_32711634_32711784_32715454_32715568_32718743_32718841_32719247_32719310_32721002_32721078_32722788_32722916_32725901
transcript_3558.nic	chr1	-	1407	10	ISM	ENSMUSG00000056536.15	ENSMUST00000190811.7	3015	26	-31	89823	-16	0	5prime_fragment	FALSE	canonical	3	56	junction_7	9.73475382835978	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTACTTTTTCAGTCAGT	NA	False	NA	NA	False	AATAAA	-16	NA	105591418	105574353	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_105574540_105575833_105575965_105577007_105577133_105580828_105580936_105583658_105583758_105584390_105584513_105585326_105585576_105586611_105586732_105587017_105587092_105591224
transcript_35584.nnic	chr16	+	814	5	NIC	ENSMUSG00000022800.15	novel	1671	5	NA	NA	-48	1	combination_of_known_splicesites	FALSE	canonical	3	7	junction_4	276.059210134348	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGATTTCTGTATTAATTG	NA	False	NA	NA	False	AATAAA	-17	NA	32698102	32717621	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_+_32698367_32704493_32704623_32711634_32711784_32715454_32715568_32717462
transcript_35586.known	chr16	+	620	4	FSM	ENSMUSG00000022800.15	ENSMUST00000145146.8	620	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	306.361804988082	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAGATTTCTGTATTAATT	NA	False	NA	NA	False	AATAAA	-16	NA	32698182	32717620	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_32698367_32704493_32704623_32711634_32711784_32717462
transcript_35588.known	chr16	+	1792	8	FSM	ENSMUSG00000022800.15	ENSMUST00000171325.9	1792	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	273.034198351393	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTAGTGTCTGTAGATTC	NA	False	NA	36	True	AATAAA	-43	NA	32698158	32726835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_32698367_32704493_32704623_32711634_32711784_32715454_32715568_32718770_32718841_32719247_32719310_32722788_32722916_32725901
transcript_35590.known	chr16	+	5536	21	FSM	ENSMUSG00000022801.14	ENSMUST00000023491.13	5536	21	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_20	10.2853050513828	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGGTTTTCTTGCCAGAG	NA	False	NA	16	True	AATAAA	-25	NA	32734469	32836017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_32734774_32770661_32770807_32772426_32772554_32775669_32775776_32779764_32779902_32782004_32782115_32794249_32794344_32796098_32796220_32799765_32799915_32802197_32802275_32806345_32806398_32807108_32807259_32808800_32808852_32810634_32810689_32814131_32814204_32815317_32815367_32816175_32816284_32817751_32817859_32818873_32819012_32826033_32826112_32832710
transcript_35591.known	chr16	+	119	1	FSM	ENSMUSG00000070225.3	ENSMUST00000093713.3	119	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTGGACCAAAAAAAAAAA	185	False	NA	NA	False	NA	NA	NA	32822272	32822391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_32822300_32822400
transcript_35592.known	chr16	-	5618	11	FSM	ENSMUSG00000035578.17	ENSMUST00000115100.9	5618	11	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_9	25.6242073048124	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAGTGGAAACGGGTTTAA	1172	False	NA	NA	False	ATTAAA	-8	NA	32876560	32833052	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_32837434_32839810_32839913_32840883_32841016_32849384_32849460_32851144_32851307_32855910_32855993_32861133_32861263_32865889_32866072_32870221_32870484_32873993_32874065_32876520
transcript_35594.nnic	chr16	-	1388	8	NNC	ENSMUSG00000035578.17	novel	5618	11	NA	NA	6354	75	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_7	7.43406390357582	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTAGGGTTGGTGGTGTTG	6074	False	NA	77	True	AATAAA	-35	NA	32863886	32836914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_32837434_32839810_32839913_32840883_32841016_32849384_32849460_32851144_32851307_32855910_32855993_32861133_32861263_32863699
transcript_35595.nnic	chr16	-	1313	8	NNC	ENSMUSG00000035578.17	novel	5618	11	NA	NA	6354	0	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_7	7.43406390357582	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCACCTAGCATCATGTG	6074	False	NA	2	True	ATTAAA	-29	NA	32863886	32836989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_32837434_32839810_32839913_32840883_32841016_32849384_32849460_32851144_32851307_32855910_32855993_32861133_32861263_32863699
transcript_35601.known	chr16	-	442	4	FSM	ENSMUSG00000035578.17	ENSMUST00000133219.2	442	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	27.6043474836845	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAGAAGTAACCAGTTTC	NA	False	NA	NA	False	GATAAA	-43	NA	32844307	32837319	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_32837434_32839810_32839913_32840883_32841016_32844213
transcript_35602.nnic	chr16	-	1129	4	NNC	ENSMUSG00000035578.17	novel	1252	8	NA	NA	6354	10563	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_3	11.1455023315337	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTATGCATTTCTCTCAGA	6074	False	NA	NA	False	NA	NA	NA	32863886	32850575	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_32851307_32855910_32855993_32861133_32861263_32863699
transcript_35605.known	chr16	-	713	3	FSM	ENSMUSG00000035578.17	ENSMUST00000126793.2	713	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	1	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCTAAACATTTCGGTAAA	1177	False	NA	NA	False	NA	NA	NA	32876555	32869876	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_32870484_32873993_32874065_32876520
transcript_35608.known	chr16	+	500	5	FSM	ENSMUSG00000060636.15	ENSMUST00000115078.8	500	5	0	0	0	0	multi-exon	FALSE	canonical	3	927	junction_1	3609.33805392346	3684	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCACATCTGTCC	NA	False	NA	10	True	AATAAA	-25	NA	32876896	32880535	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_32876988_32877505_32877549_32877759_32877913_32879048_32879194_32880467
transcript_35610.known	chr16	+	519	5	FSM	ENSMUSG00000060636.15	ENSMUST00000115076.8	519	5	0	0	0	0	multi-exon	FALSE	canonical	3	362	junction_1	3846.56847072816	923	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCTGTCCTAAATTGAGT	NA	False	NA	20	True	AATAAA	-35	NA	32877175	32880545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_32877276_32877505_32877549_32877759_32877913_32879048_32879194_32880467
transcript_35614.known	chr16	+	491	5	FSM	ENSMUSG00000060636.15	ENSMUST00000078804.12	491	5	0	0	0	0	multi-exon	FALSE	canonical	3	3858	junction_1	2402.68870226669	5364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTTTCTCTTTGTTAAG	NA	False	NA	34	True	AATAAA	-45	NA	32876822	32880559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_32876881_32877505_32877549_32877759_32877913_32879048_32879194_32880467
transcript_35615.known	chr16	+	2858	3	FSM	ENSMUSG00000060636.15	ENSMUST00000133785.2	2858	3	0	0	0	0	multi-exon	FALSE	canonical	3	3858	junction_1	3305	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCTGTCCTAAATTGAGT	NA	False	NA	20	True	AATAAA	-35	NA	32876851	32880545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_32876881_32877505_32877549_32877759
transcript_35616.known	chr16	+	443	5	FSM	ENSMUSG00000060636.15	ENSMUST00000232188.2	443	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	3515.29062632096	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTTGTATTTTTTTTTC	NA	False	NA	0	True	AATAAA	-15	NA	32876868	32880525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_32876926_32877505_32877536_32877759_32877913_32879048_32879194_32880467
transcript_35617.known	chr16	+	518	4	FSM	ENSMUSG00000060636.15	ENSMUST00000115075.2	518	4	0	0	0	0	multi-exon	FALSE	canonical	3	8092	junction_3	1051.6733755729	636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTTGTATTTTTTTTTCA	NA	False	NA	1	True	AATAAA	-16	NA	32877387	32880526	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_32877549_32877759_32877913_32879048_32879194_32880467
transcript_35620.nnic	chr16	-	747	3	NNC	ENSMUSG00000097318.3	novel	665	2	NA	NA	-30	6587	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	4	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGGAGAACAGGCTTGCC	NA	False	NA	NA	False	NA	NA	NA	33201127	33193636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_33194022_33200608_33200729_33200885
transcript_35621.known	chr16	-	665	2	FSM	ENSMUSG00000097318.3	ENSMUST00000231849.2	665	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGAATTCTCTCCTTG	NA	False	NA	-2	True	ATTAAA	-16	NA	33201045	33200223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_33200729_33200885
transcript_35622.known	chr16	-	737	2	FSM	ENSMUSG00000097318.3	ENSMUST00000180923.2	737	2	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	0	378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTGGAATTCTCTCCTT	NA	False	NA	-3	True	ATTAAA	-15	NA	33201097	33200224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_33200750_33200885
transcript_35623.known	chr16	+	9830	9	FSM	ENSMUSG00000022811.18	ENSMUST00000165418.9	9830	9	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_3	9.03811374126261	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTAAAGCTGAAACAGCTG	NA	False	NA	NA	False	TTTAAA	-33	NA	33201205	33324733	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_33201398_33241690_33241773_33247563_33247700_33254995_33255345_33277245_33277372_33287224_33287349_33288469_33288554_33315714_33315834_33316115
transcript_35627.known	chr16	+	2656	14	FSM	ENSMUSG00000035506.17	ENSMUST00000121925.8	2656	14	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_5	11.5650974613248	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTATTTTTTATTATT	NA	False	NA	9	True	AATAAA	-19	NA	33337697	33483778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_33337866_33338649_33338747_33355233_33355381_33361221_33361414_33371252_33371485_33410621_33410736_33426535_33426624_33428514_33428603_33437477_33437625_33444923_33445546_33466932_33467031_33470187_33470306_33478566_33478628_33483294
transcript_3563.known	chr1	-	1362	10	FSM	ENSMUSG00000056536.15	ENSMUST00000191408.7	1362	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	24.4969133858145	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTACTTTTTCAGTCAGT	NA	False	NA	NA	False	AATAAA	-16	NA	105591402	105574353	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_105574540_105575833_105575965_105577007_105577133_105580828_105580936_105583658_105583758_105584390_105584513_105585326_105585576_105586640_105586732_105587017_105587092_105591224
transcript_35651.known	chr16	+	2130	11	FSM	ENSMUSG00000022817.16	ENSMUST00000232262.2	2130	11	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	64.2492023296788	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGATTACTGGTTCCCT	NA	False	NA	22	True	AATAAA	-23	NA	33712310	33769523	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_33712420_33719610_33719773_33720879_33720976_33723163_33723254_33730834_33730970_33740154_33740585_33760859_33761083_33764473_33764575_33766860_33766981_33768084_33768252_33769026
transcript_35658.known	chr16	-	3283	5	FSM	ENSMUSG00000022814.7	ENSMUST00000131990.2	3283	5	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_4	482.354123025812	987	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGAACATCCTCTGTAG	8675	False	NA	NA	False	NA	NA	NA	33787373	33775163	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782611_33787195
transcript_3566.nnic	chr1	+	767	3	NNC	ENSMUSG00000026319.14	novel	874	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	25	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGTGTCTGCTTCATAGA	NA	False	NA	11	True	AATAAA	-13	NA	105591585	105592875	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_105591709_105591891_105592359_105592698
transcript_35663.known	chr16	-	3484	6	FSM	ENSMUSG00000022814.7	ENSMUST00000023510.7	3484	6	0	0	0	0	multi-exon	FALSE	canonical	3	1087	junction_1	75.962095811003	2167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTAGTCTCCTGCCTCT	8640	False	NA	NA	False	NA	NA	NA	33787408	33775151	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782611_33784141_33784296_33787195
transcript_35664.known	chr16	-	2690	16	FSM	ENSMUSG00000061751.17	ENSMUST00000232157.2	2690	16	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	6.74157910944379	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATGTTTTAATGAGGTCA	NA	False	NA	-10	True	AATAAA	-12	NA	33916398	33833515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_33834052_33834327_33834582_33836761_33837001_33848307_33848480_33849009_33849196_33851923_33852002_33852787_33852839_33853876_33853970_33854825_33854913_33855205_33855276_33855422_33855527_33855862_33855930_33860248_33860380_33873929_33874035_33875201_33875486_33916165
transcript_35665.known	chr16	-	2693	16	FSM	ENSMUSG00000061751.17	ENSMUST00000114964.8	2693	16	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	6.46701030014815	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATGTTTTAATGAGGTCA	NA	False	NA	-10	True	AATAAA	-12	NA	33916398	33833515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_33834052_33834327_33834585_33836761_33837001_33848307_33848480_33849009_33849196_33851923_33852002_33852787_33852839_33853876_33853970_33854825_33854913_33855205_33855276_33855422_33855527_33855862_33855930_33860248_33860380_33873929_33874035_33875201_33875486_33916165
transcript_3567.nnic	chr1	+	517	3	NNC	ENSMUSG00000026319.14	novel	874	2	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	21	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGTGTCTGCTTCATAGA	NA	False	NA	11	True	AATAAA	-13	NA	105591594	105592875	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_105591709_105592132_105592359_105592698
transcript_35671.known	chr16	-	615	1	FSM	ENSMUSG00000116835.2	ENSMUST00000231993.2	615	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2402	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACGTGATATTTGTAAAA	NA	False	NA	NA	False	NA	NA	NA	33827827	33827212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_33827200_33827800
transcript_35672.nnic	chr16	-	750	2	Antisense	novelGene_ENSMUSG00000022832.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	5	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGCCTGTCTTAGCTACA	NA	False	NA	NA	False	NA	NA	NA	34488982	34477891	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr16_-_34478284_34488624
transcript_3569.known	chr1	+	874	2	FSM	ENSMUSG00000026319.14	ENSMUST00000191150.2	874	2	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	0	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGTGTCTGCTTCATAGA	NA	False	NA	11	True	AATAAA	-13	NA	105591661	105592875	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_105592359_105592698
transcript_35692.known	chr16	+	3598	7	FSM	ENSMUSG00000035376.11	ENSMUST00000061156.10	3598	7	0	0	0	0	multi-exon	FALSE	canonical	3	1242	junction_3	97.2996517065823	2988	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGATCTGGAGCCATGT	NA	False	NA	NA	False	AATAAA	-20	NA	34842797	34929547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_34843006_34846194_34846313_34869089_34869109_34895975_34896065_34920125_34920248_34922315_34922495_34926684
transcript_35693.known	chr16	+	389	3	FSM	ENSMUSG00000035376.11	ENSMUST00000231516.2	389	3	0	0	0	0	multi-exon	FALSE	canonical	3	1246	junction_2	58	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCATAGCTTGATTTGATT	NA	False	NA	NA	False	AATACA	-19	NA	34842799	34869154	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_34843006_34846194_34846313_34869089
transcript_35695.known	chr16	-	3992	7	FSM	ENSMUSG00000034473.15	ENSMUST00000043521.5	3992	7	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_4	6.0736223860962	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGAACCTTTGCCCACTTT	NA	False	NA	NA	False	ATTAAA	-33	NA	35184288	35131500	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_35134658_35139173_35139240_35149867_35149984_35167968_35168164_35169200_35169365_35181930_35182130_35184193
transcript_35703.known	chr16	-	1116	2	FSM	ENSMUSG00000034473.15	ENSMUST00000138355.2	1116	2	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAAAAGAATCATGTA	NA	False	NA	NA	False	NA	NA	NA	35184222	35181042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_35182130_35184193
transcript_35706.known	chr16	-	1809	17	FSM	ENSMUSG00000022844.9	ENSMUST00000023550.9	1809	17	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_7	56.9566378374812	725	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTGGTAGAGTATGTTT	NA	False	NA	-10	True	AATAAA	-14	NA	35311243	35217681	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_35217909_35218646_35218782_35224382_35224454_35228003_35228135_35230663_35230825_35231296_35231368_35243235_35243373_35250102_35250175_35250262_35250355_35258482_35258551_35269772_35269834_35273820_35273914_35276465_35276512_35276831_35276916_35284704_35284793_35286900_35287028_35311098
transcript_35707.nnic	chr16	-	1765	17	NNC	ENSMUSG00000022844.9	novel	1809	17	NA	NA	-47	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_16	132.890697567587	162	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTGGTAGAGTATGTTT	NA	False	NA	-10	True	AATAAA	-14	NA	35311290	35217681	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_35217909_35218646_35218782_35224382_35224454_35228003_35228135_35230663_35230825_35231296_35231368_35243235_35243373_35250102_35250175_35250262_35250355_35258482_35258551_35269772_35269834_35273820_35273914_35276465_35276512_35276831_35276916_35284704_35284793_35286900_35287028_35311189
transcript_3571.known	chr1	-	471	3	FSM	ENSMUSG00000099843.2	ENSMUST00000185535.2	471	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0.5	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTGATTTTAAAACAGCC	NA	False	NA	NA	False	NA	NA	NA	105918012	105907079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_105907355_105916748_105916834_105917901
transcript_35727.known	chr16	-	236	1	FSM	ENSMUSG00000052192.6	ENSMUST00000143451.2	236	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	831	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAGCAGAAGAAATCGGGA	NA	False	NA	-55	True	NA	NA	NA	35393926	35393690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_35393700_35393900
transcript_35734.known	chr16	+	1703	8	FSM	ENSMUSG00000022849.6	ENSMUST00000231579.2	1703	8	0	0	0	0	multi-exon	TRUE	canonical	3	531	junction_3	35.6118531058502	1384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTCCAGCCACTTCCAAAT	5404	False	NA	107	True	NA	NA	NA	35590744	35645918	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_35590910_35607559_35607746_35621906_35622089_35634287_35634425_35637521_35637694_35639048_35639133_35645058_35645170_35645252
transcript_35735.known	chr16	+	4680	9	FSM	ENSMUSG00000022849.6	ENSMUST00000023555.6	4680	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	251.189669373563	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGCTTTAATTAATGGAT	5436	False	NA	NA	False	AATAAA	-45	NA	35590776	35648847	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_35590910_35607559_35607746_35621906_35622089_35634287_35634425_35634699_35634780_35637521_35637694_35639048_35639133_35645058_35645170_35645252
transcript_35736.nic	chr16	-	1071	4	ISM	ENSMUSG00000034422.15	ENSMUST00000142946.8	4026	5	-274	5922	-112	2738	5prime_fragment	FALSE	canonical	1	2	junction_2	2.86744175568088	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGTTATATTCAATAGAC	NA	False	NA	NA	False	AATGAA	-14	NA	35692026	35683556	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_-_35683964_35685488_35685523_35686518_35686659_35691536
transcript_35737.known	chr16	-	580	2	FSM	ENSMUSG00000034422.15	ENSMUST00000135669.2	580	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAATGAA	NA	False	NA	NA	False	NA	NA	NA	35691752	35686294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_35686659_35691536
transcript_35738.known	chr16	-	7417	17	FSM	ENSMUSG00000034422.15	ENSMUST00000042665.9	7417	17	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_15	4.31883592533914	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTCTTGGTGGAATTTTT	NA	False	NA	NA	False	AATAAA	-1	NA	35691914	35653243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_35655306_35656360_35656536_35659631_35659766_35661091_35661692_35661778_35662001_35664613_35664782_35665097_35665161_35665639_35665790_35666379_35666456_35673101_35673324_35673888_35674129_35676852_35679135_35680799_35681037_35683729_35683964_35685488_35685523_35686518_35686659_35691536
transcript_35739.known	chr16	+	336	1	FSM	ENSMUSG00000062279.7	ENSMUST00000078393.7	336	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	NA	False	NA	NA	False	NA	NA	NA	35740833	35741169	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_35740800_35741200
transcript_35740.known	chr16	+	5039	14	FSM	ENSMUSG00000022905.13	ENSMUST00000004054.13	5039	14	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_10	42.2312596300516	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAACAGGTTTTCCTTGGG	NA	False	NA	26	True	AATAAA	-39	NA	35803684	35857501	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_35803879_35820551_35820686_35823212_35823321_35829685_35829786_35833262_35833358_35839627_35839760_35840525_35840615_35841057_35841158_35841854_35842019_35843544_35843624_35849891_35850018_35851539_35851668_35853621_35853801_35854090
transcript_35746.known	chr16	+	3548	11	FSM	ENSMUSG00000022906.16	ENSMUST00000114878.8	3548	11	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_5	7.49399759807808	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCTGTGAATCGTGAATG	NA	False	NA	13	True	AATAAA	-19	NA	35758839	35792975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_35759431_35761402_35761506_35763738_35763773_35767870_35768725_35773932_35774149_35777176_35777396_35780373_35780432_35784344_35784735_35788019_35788157_35789960_35790136_35792204
transcript_3575.known	chr1	-	1027	1	FSM	ENSMUSG00000099843.2	ENSMUST00000188519.2	1027	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACCAAAGTAGGAGCGTG	NA	False	NA	NA	False	AATAAA	-14	NA	105917982	105916955	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_105917000_105918000
transcript_35750.nnic	chr16	+	1250	4	NNC	ENSMUSG00000022906.16	novel	3548	11	NA	NA	16900	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	16.739839372653	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCTGTGAATCGTGAATG	9760	False	NA	13	True	AATAAA	-19	NA	35785553	35792975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_35785721_35788019_35788157_35789960_35790136_35792204
transcript_35754.known	chr16	-	2649	3	FSM	ENSMUSG00000049502.18	ENSMUST00000114885.3	2649	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	10	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCCTCATGTCTTTTTA	9994	False	NA	NA	False	NA	NA	NA	35759521	35752229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_35754170_35756746_35756998_35759063
transcript_35757.known	chr16	-	640	5	FSM	ENSMUSG00000003955.9	ENSMUST00000231351.2	640	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	448.847621693599	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTTGTCTTTGTTTTGTT	NA	False	NA	-5	True	AATACA	-14	NA	35891739	35864215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_35864462_35866748_35866858_35870211_35870321_35872655_35872779_35891686
transcript_35762.known	chr16	-	718	5	FSM	ENSMUSG00000003955.9	ENSMUST00000004057.9	718	5	0	0	0	0	multi-exon	FALSE	canonical	3	971	junction_1	40.7982842776507	2145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTATAGTATTATCTCTTC	NA	False	NA	80	True	NA	NA	NA	35891885	35864130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_35864462_35866748_35866858_35870211_35870321_35872655_35872779_35891839
transcript_35763.known	chr16	-	463	3	FSM	ENSMUSG00000003955.9	ENSMUST00000232390.2	463	3	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	524.5	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGACTTGTCTTTGTTTTGT	NA	False	NA	-6	True	AATACA	-13	NA	35872764	35864216	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_35864462_35870211_35870321_35872655
transcript_3577.known	chr1	-	5518	10	FSM	ENSMUSG00000009905.6	ENSMUST00000010049.6	5518	10	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_2	12.4017123469222	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTGAATTGCAAGCCAAAC	8261	False	NA	15	True	TATAAA	-33	NA	106687457	106648188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_106652752_106655358_106655461_106662276_106662361_106667060_106667145_106671398_106671591_106675217_106675314_106675500_106675567_106680941_106680999_106683173_106683264_106687273
transcript_35780.known	chr16	+	391	4	FSM	ENSMUSG00000075229.12	ENSMUST00000163352.9	391	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	405.618320866085	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTCTGAGCCAGCAGGC	NA	False	NA	NA	False	NA	NA	NA	35892449	35912329	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_35892508_35905386_35905534_35910270_35910331_35912203
transcript_35782.known	chr16	+	392	3	FSM	ENSMUSG00000075229.12	ENSMUST00000231468.2	392	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	434	658	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGTACATATTTATTT	NA	False	NA	16	True	ATTAAA	-13	NA	35892453	35912481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_35892508_35910270_35910331_35912203
transcript_35784.known	chr16	+	395	3	FSM	ENSMUSG00000075229.12	ENSMUST00000231239.2	395	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	453.5	473	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGACTCTGTGTACATATT	NA	False	NA	11	True	ATTAAA	-8	NA	35909750	35912476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_35909813_35910270_35910331_35912203
transcript_35785.known	chr16	+	1073	5	FSM	ENSMUSG00000075229.12	ENSMUST00000164916.9	1073	5	0	0	0	0	multi-exon	FALSE	canonical	3	859	junction_1	27.9284800875379	15002	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATTTATTTGGTGACTTT	NA	False	NA	25	True	ATTAAA	-22	NA	35892054	35912490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_35892508_35903060_35903187_35905386_35905534_35910270_35910331_35912203
transcript_35786.known	chr16	+	740	5	FSM	ENSMUSG00000075229.12	ENSMUST00000099937.6	740	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	389.064262044203	773	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGTACATATTTATTT	NA	False	NA	16	True	ATTAAA	-13	NA	35901644	35912481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_35901774_35903060_35903187_35905386_35905534_35910270_35910331_35912203
transcript_35787.known	chr16	-	2783	3	FSM	ENSMUSG00000034362.8	ENSMUST00000096090.3	2783	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTATTAATATCCAAAATTC	NA	False	NA	NA	False	NA	NA	NA	35951611	35940315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_35942740_35945343_35945446_35951354
transcript_35789.known	chr16	+	2878	8	FSM	ENSMUSG00000022900.15	ENSMUST00000119464.2	2878	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	133.242452020398	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAAATTCCTGTGTTTGGC	NA	False	NA	6	True	ATTAAA	-18	NA	36514399	36547103	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_36514577_36528611_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543001_36545878
transcript_3579.nnic	chr1	-	1559	9	NNC	ENSMUSG00000009905.6	novel	640	4	NA	NA	-47	-10223	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	61.9536116784163	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACAGGTCTGCAGAGGTGG	8214	False	NA	NA	False	AATAAA	-18	NA	106687504	106658411	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_106659071_106662276_106662361_106667060_106667145_106671398_106671591_106675217_106675314_106675500_106675567_106680941_106680999_106683173_106683264_106687273
transcript_35790.known	chr16	+	3042	8	FSM	ENSMUSG00000022900.15	ENSMUST00000023617.13	3042	8	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	99.4786409235671	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAACAGAAAAAAAAAAAAAA	NA	False	NA	69	True	NA	NA	NA	36514339	36547166	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_36514577_36528611_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543042_36545878
transcript_35794.known	chr16	+	2850	7	FSM	ENSMUSG00000022900.15	ENSMUST00000089618.10	2850	7	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_5	137.466864694329	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTGTTTGGCAGAGGT	NA	False	NA	12	True	ATTAAA	-24	NA	36514342	36547109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_36514577_36528611_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36542244_36543042_36545878
transcript_35798.nic	chr16	+	2496	7	ISM	ENSMUSG00000022900.15	ENSMUST00000023617.13	3042	8	14092	489	-7468	-426	3prime_fragment	FALSE	canonical	3	275	junction_4	15.8683822601914	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGAGTTTCTACTTCTAT	NA	False	NA	20	True	AATAAA	-16	NA	36528431	36546677	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_+_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543042_36545878
transcript_35799.nic	chr16	+	2928	7	ISM	ENSMUSG00000022900.15	ENSMUST00000023617.13	3042	8	14092	57	-7468	0	3prime_fragment	FALSE	canonical	3	275	junction_4	15.8683822601914	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTGTTTGGCAGAGGT	NA	False	NA	12	True	ATTAAA	-24	NA	36528431	36547109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_+_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543042_36545878
transcript_35803.nic	chr16	+	1388	2	ISM	ENSMUSG00000022900.15	ENSMUST00000153802.2	1922	5	14163	6764	-7342	-6764	internal_fragment	FALSE	canonical	3	311	junction_1	0	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGTGGGGATGAAGAGAT	NA	False	NA	NA	False	NA	NA	NA	36528557	36531003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_+_36528783_36529840
transcript_35804.nic	chr16	-	917	6	ISM	ENSMUSG00000022899.11	ENSMUST00000164579.9	1068	7	2446	0	-29	0	3prime_fragment	FALSE	canonical	0	0	junction_1	0.894427190999916	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTGTGTCAGCATATATT	8308	False	NA	NA	False	GATAAA	-42	NA	36602856	36592235	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_-_36592504_36592783_36592875_36594903_36595004_36595959_36596053_36601927_36602070_36602633
transcript_35805.known	chr16	+	2257	15	FSM	ENSMUSG00000022837.15	ENSMUST00000023535.4	2257	15	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_14	52.2779073016196	473	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGTTGTCATGTTATT	NA	False	NA	44	True	AATAAA	-11	NA	36648769	36693075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_36648855_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36687920_36688053_36691812_36691970_36692553
transcript_35806.nic	chr16	+	2256	15	NIC	ENSMUSG00000022837.15	novel	2257	15	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	69.4050518657669	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGTTGTCATGTTATT	NA	False	NA	44	True	AATAAA	-11	NA	36648717	36693075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_+_36648802_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36687920_36688053_36691812_36691970_36692553
transcript_35811.known	chr16	+	2797	14	FSM	ENSMUSG00000022837.15	ENSMUST00000114819.8	2797	14	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	68.0198369951889	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCATGTTATTTCAATGTT	NA	False	NA	52	True	AATAAA	-19	NA	36648768	36693083	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_36648802_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36687920_36688053_36691812
transcript_35814.nic	chr16	+	1737	13	NIC	ENSMUSG00000022837.15	novel	2257	15	NA	NA	-57	0	combination_of_known_junctions	FALSE	canonical	3	130	junction_12	42.1751473685102	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCAAGTCTGAAAGCATG	NA	False	NA	15	True	NA	NA	NA	36648689	36679934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_+_36648855_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36679723
transcript_35817.nic	chr16	+	1656	13	NIC	ENSMUSG00000022837.15	novel	2797	14	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	67.3747294366862	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCAAGTCTGAAAGCATG	NA	False	NA	15	True	NA	NA	NA	36648717	36679934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_+_36648802_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36679723
transcript_35825.known	chr16	-	849	6	FSM	ENSMUSG00000022838.15	ENSMUST00000023537.6	849	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	3.81575680566778	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTATTTGTTGGTATTCTC	8234	False	NA	NA	False	AATAAA	-18	NA	36648589	36614110	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_36614289_36620948_36621065_36628376_36628523_36630833_36630971_36645019_36645115_36648412
transcript_35827.known	chr16	-	1030	6	FSM	ENSMUSG00000022838.15	ENSMUST00000114829.9	1030	6	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_4	1.32664991614216	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTGGTATTCTCATGTG	8200	False	NA	NA	False	AATAAA	-23	NA	36648623	36614105	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_36614289_36620948_36621207_36628376_36628523_36630833_36630971_36645019_36645115_36648412
transcript_35834.known	chr16	-	667	4	FSM	ENSMUSG00000022838.15	ENSMUST00000147053.2	667	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	4.49691252107735	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGAGAATAAATATTCCTA	8250	False	NA	NA	False	AAAACA	-30	NA	36648573	36614186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_36614289_36620948_36621207_36628376_36628523_36648412
transcript_35835.nic	chr16	+	763	6	ISM	ENSMUSG00000034243.18	ENSMUST00000114812.9	11001	22	-46	43684	-18	0	5prime_fragment	FALSE	canonical	3	20	junction_2	8.99777750336159	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAATAGAAAAAATAAAACA	1431	False	NA	NA	False	NA	NA	NA	36695483	36709763	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_+_36695626_36705372_36705551_36706492_36706591_36707600_36707766_36707918_36708069_36709733
transcript_35836.nic	chr16	+	625	5	ISM	ENSMUSG00000034243.18	ENSMUST00000114812.9	11001	22	-46	45487	-18	0	5prime_fragment	TRUE	canonical	3	20	junction_2	6.45658578507248	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCATGCAAAGGCCAAGAT	1431	False	NA	NA	False	AATAAA	-2	NA	36695483	36707960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_+_36695626_36705372_36705551_36706492_36706591_36707600_36707766_36707918
transcript_35839.known	chr16	+	509	4	FSM	ENSMUSG00000034243.18	ENSMUST00000135800.2	509	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	14.1656862405839	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCATGCAAAGGCCAAGAT	1449	False	NA	NA	False	AATAAA	-2	NA	36695501	36707960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_36695626_36705372_36705551_36707600_36707766_36707918
transcript_35840.nnic	chr16	+	1001	6	NNC	ENSMUSG00000034206.16	novel	7386	26	NA	NA	-45	1	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_5	12.2474487139159	18	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTATTTATTTGTTTA	3703	False	NA	NA	False	ATTAAA	-17	NA	36832102	36837953	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_36832422_36833468_36833649_36835440_36835572_36836674_36836771_36837560_36837718_36837835
transcript_35841.nic	chr16	+	1118	5	ISM	ENSMUSG00000034206.16	ENSMUST00000183112.8	7386	26	-45	77402	-45	0	5prime_fragment	FALSE	canonical	3	18	junction_3	8.6421930087218	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTTATTTATTTGTTT	3703	False	NA	NA	False	ATTAAA	-16	NA	36832102	36837952	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_+_36832422_36833468_36833649_36835440_36835572_36836674_36836771_36837560
transcript_35842.nnic	chr16	+	905	5	NNC	ENSMUSG00000034206.16	novel	7290	25	NA	NA	-45	1	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_4	13.4721935853075	28	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTATTTATTTGTTTA	3703	False	NA	NA	False	ATTAAA	-17	NA	36832102	36837953	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_36832422_36833468_36833649_36835440_36835572_36837560_36837718_36837835
transcript_35844.nic	chr16	+	1023	4	ISM	ENSMUSG00000034206.16	ENSMUST00000071452.12	7290	25	-45	77401	-45	1	5prime_fragment	FALSE	canonical	3	20	junction_3	9.03081145609604	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTATTTATTTGTTTA	3703	False	NA	NA	False	ATTAAA	-17	NA	36832102	36837953	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_+_36832422_36833468_36833649_36835440_36835572_36837560
transcript_35846.known	chr16	-	3084	5	FSM	ENSMUSG00000022828.11	ENSMUST00000023525.9	3084	5	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_4	13.7204227340122	210	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGTGGTTATACTCACTAA	NA	False	NA	NA	False	AATAAA	-36	NA	37360151	37330151	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_37332182_37336080_37336323_37343112_37343315_37356082_37356556_37360014
transcript_35849.known	chr16	+	2031	8	FSM	ENSMUSG00000022827.15	ENSMUST00000023524.13	2031	8	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_4	11.0896163971859	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTGTCATTTCTTTTAA	NA	False	NA	NA	False	ATTAAA	-20	NA	37360246	37392747	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_37360323_37362208_37362301_37377182_37377313_37380356_37380472_37383977_37384129_37387681_37387754_37390749_37390789_37391391
transcript_35852.known	chr16	+	1960	8	FSM	ENSMUSG00000022827.15	ENSMUST00000130028.2	1960	8	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	38.0767216904748	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACACAGTGTCATTTCTTT	NA	False	NA	NA	False	ATTAAA	-17	NA	37360261	37392744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_37360323_37362208_37362301_37377182_37377313_37380356_37380472_37384030_37384129_37387681_37387754_37390749_37390789_37391391
transcript_35854.nic	chr16	+	278	2	ISM	ENSMUSG00000022827.15	ENSMUST00000128036.2	4332	4	-32	22012	-12	-22012	5prime_fragment	FALSE	canonical	3	122	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGGGATTGATTTAGCTCC	NA	False	NA	NA	False	ATTAAA	-14	NA	37360234	37362398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_+_37360323_37362208
transcript_35863.known	chr16	-	933	1	FSM	ENSMUSG00000022820.5	ENSMUST00000231881.2	933	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATACATATTCTCTATCAT	NA	False	NA	NA	False	AATAAA	-16	NA	37474728	37473795	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_37473800_37474700
transcript_35864.known	chr16	+	3789	11	FSM	ENSMUSG00000022816.12	ENSMUST00000114763.3	3789	11	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_9	10.1607086367044	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATAATAGTTGGTTTC	5151	False	NA	NA	False	NA	NA	NA	37597234	37656876	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_37597515_37597655_37597713_37636067_37636173_37639265_37639396_37641517_37641551_37642962_37643094_37647087_37647207_37649068_37649182_37649475_37649587_37651918_37651996_37654243
transcript_3587.known	chr1	-	4633	11	FSM	ENSMUSG00000009907.18	ENSMUST00000094646.6	4633	11	0	0	0	0	multi-exon	TRUE	canonical	3	455	junction_4	35.0793386482699	830	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTATGTTTTTCGTG	24	False	NA	NA	False	ATTAAA	-5	NA	106724458	106697159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_106700279_106701736_106701878_106704999_106705220_106706698_106706781_106707691_106707841_106708233_106708391_106710395_106710516_106714432_106714501_106717658_106717816_106719407_106719520_106724150
transcript_35873.nnic	chr16	-	1250	7	NNC	ENSMUSG00000022809.5	novel	2553	9	NA	NA	40664	-687	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	2.28521820013368	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCAGGTGTTAGGTGGGA	NA	False	NA	NA	False	AATAAA	-19	NA	38074522	38069371	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_38069752_38071134_38071241_38071489_38071607_38071755_38071899_38073189_38073465_38074101_38074290_38074481
transcript_35876.known	chr16	-	2529	9	FSM	ENSMUSG00000022805.18	ENSMUST00000114740.3	2529	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	3.3166247903554	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTCAAAAATTAAAATCTT	NA	False	NA	NA	False	NA	NA	NA	38162174	38142542	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_38144022_38144498_38144657_38148569_38148748_38152529_38152712_38153115_38153173_38154103_38154188_38155865_38156024_38156705_38156783_38162018
transcript_35878.nnic	chr16	-	1615	8	NNC	ENSMUSG00000022805.18	novel	3048	17	NA	NA	23059	0	at_least_one_novel_splicesite	TRUE	canonical	3	10	junction_6	14.2571142284282	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACGTTGTTTGTAAAGCT	NA	False	NA	-3	True	AATAAA	-16	NA	38139115	38118115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_38118658_38122329_38122422_38122978_38123128_38125140_38125363_38127077_38127225_38128443_38128516_38131353_38131471_38138841
transcript_35879.nnic	chr16	-	1436	7	NNC	ENSMUSG00000022805.18	novel	3048	17	NA	NA	23121	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_6	16.2651638650078	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACGTTGTTTGTAAAGCT	NA	False	NA	-3	True	AATAAA	-16	NA	38139053	38118115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_38118658_38122329_38122422_38122978_38123128_38125140_38125363_38127077_38127225_38128443_38128516_38138841
transcript_35883.known	chr16	+	2169	4	FSM	ENSMUSG00000022803.13	ENSMUST00000023494.13	2169	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTCCCTTCAACTTTTAA	4864	False	NA	NA	False	AATAAA	-17	NA	38182570	38198578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_38183510_38189845_38189955_38194180_38194740_38198016
transcript_35888.known	chr16	+	444	3	FSM	ENSMUSG00000046516.11	ENSMUST00000050273.9	444	3	0	0	0	0	multi-exon	FALSE	canonical	3	2901	junction_2	455	36141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTTGTTGTGTTTCTTTT	NA	False	NA	28	True	ATTAAA	-30	NA	38167352	38173125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_38167570_38169602_38169692_38172987
transcript_35889.known	chr16	+	2396	2	FSM	ENSMUSG00000046516.11	ENSMUST00000144812.2	2396	2	0	0	0	0	multi-exon	FALSE	canonical	3	2901	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAACAGAAGGAAAGAAA	NA	False	NA	-4	True	GATAAA	-25	NA	38167401	38173093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_38169692_38172987
transcript_35890.known	chr16	+	3690	2	FSM	ENSMUSG00000046516.11	ENSMUST00000120495.2	3690	2	0	0	0	0	multi-exon	FALSE	canonical	3	3811	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAATATGCTGAACCG	NA	False	NA	9	True	ATTAAA	-11	NA	38167383	38173106	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_38167570_38169602
transcript_35891.known	chr16	+	213	3	FSM	ENSMUSG00000046516.11	ENSMUST00000156026.2	213	3	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_2	11	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAAATATGCTGAACCGT	NA	False	NA	10	True	ATTAAA	-12	NA	38169653	38173107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_38169692_38170038_38170094_38172987
transcript_3591.known	chr1	+	4581	7	FSM	ENSMUSG00000026315.14	ENSMUST00000112706.4	4581	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.34370962471642	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCACTTATTAATGCTTT	6206	False	NA	NA	False	NA	NA	NA	107517735	107538214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_107518018_107525184_107525368_107526629_107526768_107530529_107530648_107532333_107532477_107533513_107533667_107534650
transcript_35913.known	chr16	+	485	2	FSM	ENSMUSG00000097576.3	ENSMUST00000231660.2	485	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTAGGGACTTTTATTAAG	NA	False	NA	NA	False	AATAAA	-39	NA	38272751	38273856	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_38272823_38273442
transcript_35915.known	chr16	-	2966	4	FSM	ENSMUSG00000002844.10	ENSMUST00000002923.10	2966	4	0	0	0	0	multi-exon	FALSE	canonical	3	1151	junction_2	86.2824818063706	3009	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTGGCTGGAGACCTTT	NA	False	NA	NA	False	NA	NA	NA	38273065	38264391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_38266467_38267609_38267971_38270490_38270846_38272890
transcript_35916.known	chr16	-	511	2	FSM	ENSMUSG00000002844.10	ENSMUST00000232145.2	511	2	0	0	0	0	multi-exon	FALSE	canonical	2	38	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGTGAGTCTCTGGGTGT	NA	False	NA	NA	False	AAAAAG	-44	NA	38273044	38267613	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_38267971_38272890
transcript_35917.known	chr16	+	1701	5	FSM	ENSMUSG00000075122.6	ENSMUST00000099816.3	1701	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	0.82915619758885	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGGGGAGCAAGTTAGTG	NA	False	NA	NA	False	AATAAA	-19	NA	38279294	38307295	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_38279652_38294227_38294546_38299425_38299708_38302981_38303096_38306665
transcript_3592.known	chr1	+	666	3	FSM	ENSMUSG00000086161.2	ENSMUST00000153774.2	666	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCTGAGTTCGAGGCTCCC	NA	False	NA	NA	False	AATAAA	-18	NA	107614737	107621244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_107615059_107620098_107620191_107620991
transcript_3593.known	chr1	-	622	2	FSM	ENSMUSG00000038702.7	ENSMUST00000189370.2	622	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGCATCTGAGTCAACAG	NA	False	NA	NA	False	NA	NA	NA	111792610	111791824	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_111791962_111792125
transcript_35932.known	chr16	-	1573	7	FSM	ENSMUSG00000002846.10	ENSMUST00000002925.6	1573	7	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_6	22.2666916167525	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTTGTCTGGATCGCCT	NA	False	NA	-16	True	AGTAAA	-22	NA	38343025	38318708	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_38319446_38322923_38323035_38325773_38325853_38329200_38329269_38331080_38331170_38338728_38338895_38342702
transcript_35933.known	chr16	-	678	3	FSM	ENSMUSG00000002846.10	ENSMUST00000147543.2	678	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	91	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAATTTTAGTATTTAAT	NA	False	NA	-4	True	ATTAAA	-19	NA	38343003	38337021	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_38337233_38338728_38338895_38342702
transcript_3594.nnic	chr1	-	1095	4	NNC	ENSMUSG00000097648.2	novel	1009	3	NA	NA	-67	-144	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2.16024689946929	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGTGTACAGACAATCTAT	NA	False	NA	NA	False	ATTAAA	-19	NA	113891931	113819258	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_113819779_113837064_113837094_113844215_113844379_113891548
transcript_35942.known	chr16	-	2922	11	FSM	ENSMUSG00000034064.15	ENSMUST00000153187.8	2922	11	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_10	237.918389369128	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCATTGGCTCCTCATTT	6266	False	NA	-4	True	NA	NA	NA	38370584	38345501	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369999_38370444
transcript_35958.known	chr16	-	2758	11	FSM	ENSMUSG00000034064.15	ENSMUST00000036210.7	2758	11	0	0	0	0	multi-exon	FALSE	canonical	3	749	junction_10	82.4351866620074	686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTGGCTCCTCATTTACT	6230	False	NA	-1	True	NA	NA	NA	38370620	38345498	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
transcript_3597.known	chr1	-	1009	3	FSM	ENSMUSG00000097648.2	ENSMUST00000180837.2	1009	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1.5	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAATCAAATAGA	NA	False	NA	NA	False	TATAAA	-22	NA	113891864	113819114	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_113819779_113837064_113837094_113891548
transcript_3598.nnic	chr1	-	578	3	NNC	ENSMUSG00000097648.2	novel	1009	3	NA	NA	-34	-39488	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTGTCTTTAGTATTCA	NA	False	NA	NA	False	ATTAAA	-22	NA	113891898	113858602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_113858740_113868043_113868135_113891548
transcript_35983.known	chr16	+	2871	9	FSM	ENSMUSG00000002845.15	ENSMUST00000002924.15	2871	9	0	0	0	0	multi-exon	FALSE	canonical	1	126	junction_1	222.417084269622	2212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTCCTATTTGTGAGCAT	NA	False	NA	4	True	AATAAA	-15	NA	38383173	38412524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_38383493_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
transcript_35984.known	chr16	+	2667	9	FSM	ENSMUSG00000002845.15	ENSMUST00000171687.8	2667	9	0	0	0	0	multi-exon	FALSE	canonical	1	87	junction_5	275.38779475496	1462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTCCTATTTGTGAGCAT	NA	False	NA	4	True	AATAAA	-15	NA	38383173	38412524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_38383493_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405741_38405881_38406582_38406771_38408544_38408666_38411273
transcript_36004.known	chr16	+	1645	9	FSM	ENSMUSG00000002845.15	ENSMUST00000163884.8	1645	9	0	0	0	0	multi-exon	FALSE	canonical	1	310	junction_8	142.984210229661	427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGATCTATTTTTTCTTGCG	7070	False	NA	0	True	GATAAA	-12	NA	38379059	38411552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_38379125_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
transcript_36006.known	chr16	+	2009	7	FSM	ENSMUSG00000022793.18	ENSMUST00000154902.2	2009	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	9.26312882106017	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTCTTGGTCTTGTTTTTT	3944	False	NA	7	True	AGTAAA	-17	NA	38562657	38589210	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_38562731_38572363_38572762_38574280_38574514_38578040_38578229_38583430_38583492_38586276_38586382_38588259
transcript_36007.known	chr16	+	2304	7	FSM	ENSMUSG00000022793.18	ENSMUST00000023482.13	2304	7	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_1	6.0184900284226	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTACTGCTTTTGCAG	3912	False	NA	NA	False	NA	NA	NA	38562625	38589411	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_38562731_38572363_38572762_38574280_38574514_38578040_38578229_38583430_38583554_38586276_38586382_38588259
transcript_36008.known	chr16	+	2168	7	FSM	ENSMUSG00000022793.18	ENSMUST00000114712.8	2168	7	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	7.60847480700888	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTCTTGGTCTTGTTTTTT	3914	False	NA	7	True	AGTAAA	-17	NA	38562627	38589210	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_38562798_38572363_38572762_38574280_38574514_38578040_38578229_38583430_38583554_38586276_38586382_38588259
transcript_36012.nnic	chr16	+	645	5	NNC	ENSMUSG00000086175.3	novel	1094	6	NA	NA	20821	23267	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.5	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTTATTTTCTTAATGAC	8378	False	NA	NA	False	NA	NA	NA	38670090	38672873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_38670132_38670256_38670350_38670704_38670803_38672345_38672418_38672532
transcript_36014.known	chr16	-	1420	3	FSM	ENSMUSG00000047261.10	ENSMUST00000102817.5	1420	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	1	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGTGTCTCTGTGTTTC	NA	False	NA	2	True	AATAAA	-17	NA	42161014	42068804	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_42069478_42112161_42112730_42160835
transcript_36020.nnic	chr16	+	1814	2	Antisense	novelGene_ENSMUSG00000116684.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAATATTTTCAAAAATCAG	8581	False	NA	NA	False	AATAAA	-25	NA	43531165	43547728	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr16_+_43531347_43546095
transcript_36023.known	chr16	+	3779	17	FSM	ENSMUSG00000022701.19	ENSMUST00000132859.8	3779	17	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	29.3489245969933	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCTCGATCCAGCATAGT	NA	False	NA	NA	False	AATAAA	-14	NA	43710162	43784677	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_43710402_43712515_43712555_43718452_43718595_43725713_43725847_43727150_43727330_43728774_43728999_43735812_43735967_43751556_43751748_43759276_43759527_43763866_43764328_43765001_43765094_43767031_43767115_43767789_43767892_43777180_43777325_43779578_43779732_43780380_43780527_43783630
transcript_36025.known	chr16	+	3745	16	FSM	ENSMUSG00000022701.19	ENSMUST00000178400.9	3745	16	0	0	0	0	multi-exon	FALSE	canonical	1	27	junction_10	16.0949957716331	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCTCGATCCAGCATAGT	NA	False	NA	NA	False	AATAAA	-14	NA	43710162	43784677	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_43710402_43718452_43718595_43725708_43725847_43727150_43727330_43728774_43728999_43735812_43735967_43751556_43751748_43759276_43759527_43763866_43764328_43765001_43765094_43767031_43767115_43767789_43767892_43777180_43777325_43779578_43779732_43780380_43780527_43783630
transcript_36033.nic	chr16	-	3499	9	NIC	ENSMUSG00000022704.17	novel	3856	9	NA	NA	-448	0	combination_of_known_junctions	FALSE	canonical	1	31	junction_3	35.9374456521328	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGCTGTGCATTGTTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	43710496	43681769	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_-_43683665_43687772_43687891_43689308_43689461_43691983_43692184_43696991_43697205_43698319_43698397_43700661_43700718_43701355_43701577_43709929
transcript_36035.nic	chr16	+	1743	7	ISM	ENSMUSG00000022701.19	ENSMUST00000122014.8	1822	8	-28	7636	-28	-7636	5prime_fragment	FALSE	canonical	3	68	junction_1	8.29993306532582	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTTTCCCTTTTCATTT	NA	False	NA	NA	False	AATAAA	-31	NA	43710233	43752294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_+_43710402_43718452_43718595_43725708_43725847_43727150_43727330_43728774_43728999_43735812_43735967_43751556
transcript_36047.nic	chr16	+	724	4	ISM	ENSMUSG00000022701.19	ENSMUST00000122014.8	1822	8	-26	32502	-26	-1417	5prime_fragment	FALSE	canonical	3	68	junction_1	9.89949493661167	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTGCCATCTGTGGTTTGG	NA	False	NA	NA	False	AATAAA	-24	NA	43710235	43727428	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_+_43710402_43718452_43718595_43725708_43725847_43727150
transcript_36048.known	chr16	+	487	4	FSM	ENSMUSG00000022701.19	ENSMUST00000151183.2	487	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	38.870154217457	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTCTTGGAGGCTCAGA	NA	False	NA	NA	False	AAAAAG	-2	NA	43710302	43728845	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_43710402_43725708_43725847_43727150_43727330_43728774
transcript_36052.known	chr16	-	5751	5	FSM	ENSMUSG00000036304.15	ENSMUST00000231700.2	5751	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	18.5067555233217	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTCTGTGGTTGTTGGTGT	NA	False	NA	-1	True	AATAAA	-20	NA	43800154	43785395	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_43789777_43791761_43791930_43793830_43794530_43799270_43799441_43799821
transcript_36053.known	chr16	-	3896	15	FSM	ENSMUSG00000052459.14	ENSMUST00000063661.13	3896	15	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_14	86.121532541792	205	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATGCAGTTCTCTATTTA	NA	False	NA	-11	True	AATATA	-17	NA	43959559	43906007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860_43932076_43934976_43935106_43937149_43937246_43959310
transcript_36065.known	chr16	+	3756	6	FSM	ENSMUSG00000022698.18	ENSMUST00000159514.8	3756	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	773.749675282646	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGATCTGTCTGTAACTGT	NA	False	NA	19	True	AATAAA	-19	NA	43960192	43982837	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_43960475_43965143_43965282_43976772_43976910_43977436_43977557_43978242_43978310_43979825
transcript_36067.known	chr16	+	4487	5	FSM	ENSMUSG00000022698.18	ENSMUST00000161326.8	4487	5	0	0	0	0	multi-exon	FALSE	canonical	3	958	junction_1	274.815733719887	763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAAAGTATTTGTTTTTGT	NA	False	NA	4	True	ATTAAA	-16	NA	43960215	43983729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_43960475_43976772_43976910_43977436_43977557_43978242_43978310_43979825
transcript_36074.known	chr16	+	3557	5	FSM	ENSMUSG00000022698.18	ENSMUST00000063520.15	3557	5	0	0	0	0	multi-exon	FALSE	canonical	3	375	junction_1	525.255652040033	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTGATCTGTCTGTAACT	NA	False	NA	17	True	AATAAA	-17	NA	43960248	43982835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_43960475_43976775_43976910_43977436_43977557_43978242_43978310_43979825
transcript_36082.known	chr16	+	2136	4	FSM	ENSMUSG00000022698.18	ENSMUST00000063542.8	2136	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	621.795965106097	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTGGTATGAAAGTATCAT	NA	False	NA	NA	False	AGTAAA	-2	NA	43960254	43981537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_43960475_43976772_43976910_43978242_43978310_43979825
transcript_36089.known	chr16	+	4627	18	FSM	ENSMUSG00000043065.13	ENSMUST00000050897.7	4627	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	35.5942143737688	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGGCCCCCGTAGATTCA	6108	False	NA	NA	False	AATAAA	-23	NA	44167483	44208860	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_44167870_44175802_44175899_44176507_44176556_44178122_44178267_44185946_44186050_44186895_44187003_44187995_44188112_44190242_44190383_44190600_44190742_44191042_44191309_44192896_44193029_44196004_44196156_44197160_44197386_44199218_44199704_44202381_44202566_44205033_44205137_44205981_44206070_44207148
transcript_36093.known	chr16	+	2866	9	FSM	ENSMUSG00000036208.14	ENSMUST00000048788.14	2866	9	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	9.69455388349562	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATCAATGCCATCACCTGA	NA	False	NA	NA	False	NA	NA	NA	44544663	44557647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_44544832_44547390_44547546_44549604_44549685_44549944_44550077_44550482_44550561_44551694_44552060_44552420_44552483_44554903_44555161_44556078
transcript_36099.known	chr16	-	3415	6	FSM	ENSMUSG00000022668.11	ENSMUST00000162512.8	3415	6	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_4	12.4739729036101	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGCCTTGTCATGGTGT	NA	False	NA	NA	False	NA	NA	NA	44566726	44557130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_44559732_44560391_44560511_44562866_44562967_44564100_44564232_44565757_44565857_44566361
transcript_3610.known	chr1	-	465	3	FSM	ENSMUSG00000026374.15	ENSMUST00000188882.2	465	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	565	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTGTTTAAAGAAAGGAGA	NA	False	NA	NA	False	AAGAAA	-27	NA	118238966	118236436	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_118236572_118237502_118237597_118238730
transcript_36100.known	chr16	-	836	6	FSM	ENSMUSG00000022668.11	ENSMUST00000023348.11	836	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	38.0473389345431	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTAAGGGTTACAAATAAT	NA	False	NA	-72	True	NA	NA	NA	44566722	44559504	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_44559732_44560391_44560511_44562866_44562967_44564100_44564232_44565757_44565857_44566562
transcript_36104.nic	chr16	-	1160	6	NIC	ENSMUSG00000022668.11	novel	3415	6	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_4	40.3187301387333	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTAAGGGTTACAAATAAT	NA	False	NA	-72	True	NA	NA	NA	44566733	44559504	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_-_44559732_44560391_44560511_44562866_44562967_44564100_44564232_44565645_44565857_44566361
transcript_36109.known	chr16	-	739	5	FSM	ENSMUSG00000022668.11	ENSMUST00000161436.2	739	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	49.7562810105418	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGACAACTGGAGTTAAAC	NA	False	NA	NA	False	AGTAAA	-34	NA	44566646	44559627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_44559732_44560391_44560511_44562866_44562967_44564100_44564232_44566361
transcript_36119.nnic	chr16	-	917	5	NIC	ENSMUSG00000022668.11	novel	3415	6	NA	NA	-7	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_3	47.3675785743793	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTAAGGGTTACAAATAAT	NA	False	NA	-72	True	NA	NA	NA	44566733	44559504	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_-_44559732_44560391_44560511_44562866_44562967_44565757_44565857_44566361
transcript_36127.known	chr16	-	4233	7	FSM	ENSMUSG00000022664.12	ENSMUST00000023344.10	4233	7	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_3	4.7404875511093	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGATTAGCCTTGAGTCCAC	NA	False	NA	NA	False	NA	NA	NA	44979069	44959935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_44962576_44963983_44964765_44967630_44967699_44971815_44971950_44972939_44973039_44977823_44978010_44978744
transcript_36129.known	chr16	+	2057	12	FSM	ENSMUSG00000022663.4	ENSMUST00000023343.4	2057	12	0	0	0	0	multi-exon	FALSE	canonical	3	353	junction_3	33.1011472673263	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACACATATGCCACATATA	NA	False	NA	NA	False	ATTAAA	-17	NA	44979147	45008901	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_44979535_44982768_44982811_44987342_44987393_44990228_44990300_44992008_44992117_44995611_44995662_44998592_44998675_45003018_45003054_45003183_45003340_45004044_45004173_45006528_45006598_45008022
transcript_36131.known	chr16	+	3251	6	FSM	ENSMUSG00000052013.16	ENSMUST00000102802.10	3251	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	0.489897948556636	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCACAAGTGGGAGATGATT	6224	False	NA	NA	False	AATAAA	-33	NA	45044677	45073255	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_45044825_45059406_45059728_45063068_45063105_45064518_45064675_45066613_45066661_45070711
transcript_36132.known	chr16	-	2347	6	FSM	ENSMUSG00000022661.15	ENSMUST00000163230.8	2347	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	7.98498591107085	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGAATTTTTTTTTTTC	NA	False	NA	NA	False	AATAAA	-7	NA	45229416	45202497	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_45203821_45212607_45212752_45214955_45215229_45217331_45217659_45220584_45220667_45229218
transcript_36134.known	chr16	-	281	2	FSM	ENSMUSG00000022661.15	ENSMUST00000172091.2	281	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGTGAAGCCTATCCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	45229381	45227556	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_45227675_45229218
transcript_36137.known	chr16	-	1240	4	FSM	ENSMUSG00000022658.11	ENSMUST00000096057.5	1240	4	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	1.63299316185545	369	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCAGAGTATAACTTTATT	NA	False	NA	-9	True	AATAAA	-15	NA	45544971	45531592	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_45532073_45533294_45533398_45543285_45543461_45544489
transcript_36147.known	chr16	-	827	5	FSM	ENSMUSG00000033157.18	ENSMUST00000128348.3	827	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	130.370625525845	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACCCGGATACTTCAGG	NA	False	NA	NA	False	AGTAAA	-3	NA	45563265	45551913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_45552323_45553100_45553143_45557255_45557394_45557886_45557999_45563139
transcript_3615.known	chr1	+	1889	7	FSM	ENSMUSG00000026377.13	ENSMUST00000027626.13	1889	7	0	0	0	0	multi-exon	FALSE	canonical	3	402	junction_6	29.1985539976821	1623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTGGGACTTTTTTTAA	NA	False	NA	6	True	NA	NA	NA	118249568	118261552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_118249728_118251311_118251456_118255354_118255464_118257082_118257295_118258335_118258393_118260073_118260209_118260479
transcript_36150.known	chr16	-	2848	5	FSM	ENSMUSG00000033157.18	ENSMUST00000066983.13	2848	5	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_3	18.7932833746528	560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTATGGTGAGTCCTGTGC	NA	False	NA	-5	True	NA	NA	NA	45563318	45550087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_45552323_45557255_45557394_45557886_45557999_45560681_45560866_45563139
transcript_36158.nic	chr16	-	1249	4	NIC	ENSMUSG00000033157.18	novel	2848	5	NA	NA	-9	402	combination_of_known_junctions	FALSE	canonical	3	92	junction_3	111.547697819762	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTGCCATGCTATATTTAA	NA	False	NA	NA	False	AATAAA	-14	NA	45563327	45551511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_-_45552323_45557255_45557394_45557886_45557999_45563139
transcript_36159.nic	chr16	-	1104	4	NIC	ENSMUSG00000033157.18	novel	2848	5	NA	NA	-9	257	combination_of_known_junctions	FALSE	canonical	3	92	junction_3	111.547697819762	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTTTGTCTGGTACCAT	NA	False	NA	-8	True	AATAAA	-13	NA	45563327	45551656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_-_45552323_45557255_45557394_45557886_45557999_45563139
transcript_36160.nic	chr16	-	1024	4	NIC	ENSMUSG00000033157.18	novel	2848	5	NA	NA	-9	177	combination_of_known_junctions	FALSE	canonical	3	92	junction_3	111.547697819762	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATGTTTGCCTTTCTTAC	NA	False	NA	-29	True	ATTAAA	-23	NA	45563327	45551736	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_-_45552323_45557255_45557394_45557886_45557999_45563139
transcript_36162.known	chr16	-	451	2	FSM	ENSMUSG00000033157.18	ENSMUST00000155741.2	451	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAACAAGAAAGAAATCT	NA	False	NA	NA	False	AGTAAA	-25	NA	45563263	45561215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_45561543_45563139
transcript_36163.known	chr16	-	5483	18	FSM	ENSMUSG00000033149.18	ENSMUST00000036355.13	5483	18	0	0	0	0	multi-exon	TRUE	canonical	3	48	junction_15	7.72315083521806	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACAGTGGAAACACTTTC	NA	False	NA	-10	True	ATTAAA	-13	NA	45664741	45566605	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_45568295_45569089_45569176_45571708_45571929_45577461_45577609_45578479_45578571_45583272_45583478_45591034_45591135_45592497_45592639_45595306_45595451_45598075_45598166_45600618_45600730_45601664_45601821_45609351_45609481_45621854_45621993_45623058_45623203_45628488_45628873_45645121_45646459_45664570
transcript_36164.known	chr16	+	527	2	FSM	ENSMUSG00000085781.2	ENSMUST00000152070.2	527	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGAGAGAGACCTGGAAGA	NA	False	NA	NA	False	NA	NA	NA	45756685	45759642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_45756792_45759221
transcript_36167.nnic	chr16	-	2021	2	Genic_Genomic	ENSMUSG00000048087.7	novel	2093	1	NA	NA	0	0	multi-exon	FALSE	canonical	1	11	junction_1	0	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAATAAAAAAAAATAAA	NA	False	NA	NA	False	GATAAA	-31	NA	45975440	45973347	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr16_-_45974209_45974280
transcript_36168.known	chr16	-	2093	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8827	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAATAAAAAAAAATAAA	NA	False	NA	NA	False	GATAAA	-31	NA	45975440	45973347	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_45973300_45975400
transcript_36169.known	chr16	-	3062	6	FSM	ENSMUSG00000022656.16	ENSMUST00000023334.15	3062	6	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_1	19.3328735577513	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGAGATTTTTGGGGGTT	NA	False	NA	-7	True	ATTAAA	-13	NA	46317330	46267531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_46269332_46274986_46275139_46278476_46278595_46279177_46279475_46284180_46284523_46316977
transcript_36171.known	chr16	+	1479	7	FSM	ENSMUSG00000058550.16	ENSMUST00000096045.9	1479	7	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_4	76.5188792971309	2189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTTTTGTTTTTG	NA	False	NA	23	True	ACTAAA	-5	NA	48104097	48114600	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_48104205_48108240_48108359_48109401_48109569_48109690_48109742_48111376_48111678_48113273_48113470_48114061
transcript_36172.known	chr16	+	1271	6	FSM	ENSMUSG00000058550.16	ENSMUST00000050705.4	1271	6	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_3	211.400094607358	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTTTTGTTTTTG	NA	False	NA	23	True	ACTAAA	-5	NA	48104149	48114600	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_48104205_48108240_48108359_48109401_48109464_48111376_48111678_48113273_48113470_48114061
transcript_36173.known	chr16	+	2447	8	FSM	ENSMUSG00000072419.6	ENSMUST00000232448.2	2447	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	195.358069989965	590	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGGCAGCTCACTCGCCTG	NA	False	NA	NA	False	AATACA	-17	NA	48124270	48140086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_48124570_48130639_48130903_48131937_48132074_48134245_48134398_48134491_48134546_48136024_48136281_48137650_48137847_48138995
transcript_36187.known	chr16	+	3045	27	FSM	ENSMUSG00000022652.8	ENSMUST00000023330.8	3045	27	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	334.347850609362	302	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTAGAAAACATTTCCTT	NA	False	NA	11	True	AATAAA	-16	NA	48251599	48451263	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48412876_48412979_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
transcript_3621.known	chr1	+	849	6	FSM	ENSMUSG00000026377.13	ENSMUST00000112688.10	849	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	175.552157491727	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGCCAGCGTTCTGTGCA	NA	False	NA	NA	False	AAAAAG	-29	NA	118249583	118260671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_118249728_118255354_118255464_118257082_118257295_118258335_118258393_118260073_118260209_118260479
transcript_36225.known	chr16	-	5820	32	FSM	ENSMUSG00000064061.14	ENSMUST00000121869.8	5820	32	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_19	19.7691147506127	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTATTTCTTTATGTATT	4197	False	NA	-7	True	AATAAA	-18	NA	48814528	48744594	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_48746466_48747904_48748007_48748092_48748219_48748658_48748780_48749978_48750119_48751530_48751657_48754156_48754259_48755861_48755950_48757332_48757437_48758796_48758894_48762014_48762084_48762438_48762567_48763819_48763916_48765125_48765292_48765960_48765987_48768037_48768086_48768769_48768940_48770363_48770397_48771905_48772524_48774089_48774167_48778015_48778069_48778781_48778875_48780017_48780120_48781470_48781591_48792584_48792700_48795785_48795911_48798244_48798326_48799908_48800026_48801261_48801418_48802422_48802496_48804897_48804999_48814152
transcript_36230.nic	chr16	-	1743	15	ISM	ENSMUSG00000064061.14	ENSMUST00000114516.8	3331	31	-175	22528	49	-2865	5prime_fragment	FALSE	canonical	3	44	junction_2	22.4353947764578	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATAAAGTTTATTAAATTT	4246	False	NA	NA	False	NA	NA	NA	48814479	48768769	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_-_48768940_48770363_48770397_48774089_48774167_48778015_48778069_48778781_48778875_48780017_48780120_48781470_48781591_48792584_48792700_48795785_48795911_48798244_48798326_48799908_48800026_48801261_48801418_48802422_48802496_48804897_48804999_48814152
transcript_36231.known	chr16	+	3974	21	FSM	ENSMUSG00000033031.14	ENSMUST00000048374.6	3974	21	0	0	0	0	multi-exon	FALSE	canonical	2	173	junction_10	25.4173169315725	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACATTTTAGATCAGTAC	NA	False	NA	NA	False	AATAAA	-23	NA	48814550	48840068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_48814743_48817733_48817882_48819317_48819431_48820623_48820719_48821353_48821451_48821928_48822052_48822154_48822301_48824289_48824366_48824631_48824848_48826050_48826211_48827412_48827555_48829440_48829541_48831071_48831191_48833537_48833734_48834159_48834235_48834327_48834439_48835255_48835453_48836306_48836421_48836641_48836725_48837714_48837855_48838737
transcript_36241.known	chr16	+	2601	11	FSM	ENSMUSG00000032965.12	ENSMUST00000046777.11	2601	11	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_7	10.0915806492343	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTACCTTTCTTCCCTAAA	NA	False	NA	NA	False	ATTAAA	-17	NA	49519595	49585489	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_49519913_49522216_49522380_49523512_49523632_49526453_49526545_49532201_49532271_49557034_49557158_49578757_49578830_49579679_49579812_49581316_49581380_49582963_49583031_49584104
transcript_36246.nic	chr16	+	1458	10	NIC	ENSMUSG00000032965.12	novel	2601	11	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	50.3957180230794	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTTCAGAGAAGTGTTC	NA	False	NA	18	True	AATAAA	-14	NA	49519566	49584480	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_+_49519913_49523512_49523632_49526453_49526545_49532201_49532271_49557034_49557158_49578757_49578830_49579679_49579812_49581316_49581380_49582963_49583031_49584104
transcript_36249.nic	chr16	+	1352	6	ISM	ENSMUSG00000032965.12	ENSMUST00000046777.11	2601	11	-61	27923	-61	25336	5prime_fragment	FALSE	canonical	3	148	junction_2	7.35934779718964	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTTTTGCACTATACATG	NA	False	NA	NA	False	ATTAAA	-17	NA	49519534	49557566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_+_49519913_49522216_49522380_49523512_49523632_49526453_49526545_49532201_49532271_49557034
transcript_3625.known	chr1	-	616	1	FSM	ENSMUSG00000107722.2	ENSMUST00000203191.2	616	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAAAACAAAAA	1878	False	NA	NA	False	NA	NA	NA	118386997	118386381	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_118386400_118387000
transcript_36250.nic	chr16	+	1919	5	ISM	ENSMUSG00000032965.12	ENSMUST00000046777.11	2601	11	-61	52120	-61	1139	5prime_fragment	FALSE	canonical	3	148	junction_2	8.03118920210451	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTTATAAGCTTATTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	49519534	49533369	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_+_49519913_49522216_49522380_49523512_49523632_49526453_49526545_49532201
transcript_36253.known	chr16	+	1032	12	FSM	ENSMUSG00000055447.20	ENSMUST00000230641.2	1032	12	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	27.2824225191312	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGGAAGTGACGGACTGTA	NA	False	NA	NA	False	NA	NA	NA	49676149	49731239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_49676196_49688127_49688476_49689380_49689444_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49728416_49728442_49729065_49729099_49731231
transcript_36256.known	chr16	+	1358	11	FSM	ENSMUSG00000055447.20	ENSMUST00000229101.2	1358	11	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	27.0739727413618	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTGGAATCCCATTTTT	NA	False	NA	19	True	AATAAA	-23	NA	49675995	49731444	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_49676196_49688127_49688476_49689380_49689444_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49728416_49728442_49731231
transcript_36257.known	chr16	+	1316	11	FSM	ENSMUSG00000055447.20	ENSMUST00000229206.2	1316	11	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_9	24.8766959220874	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTGGAATCCCATTTTT	NA	False	NA	19	True	AATAAA	-23	NA	49676007	49731444	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_49676196_49688127_49688476_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49728416_49728442_49729065_49729099_49731231
transcript_36261.known	chr16	+	5250	10	FSM	ENSMUSG00000055447.20	ENSMUST00000084838.14	5250	10	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	24.0960014099978	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTGGGTTATTTCTGT	NA	False	NA	NA	False	AATAAA	-14	NA	49676007	49735373	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_49676196_49688127_49688476_49689380_49689444_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49731231
transcript_36262.nic	chr16	+	1283	10	NIC	ENSMUSG00000055447.20	novel	1316	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_9	22.7107414625278	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTGGAATCCCATTTTT	NA	False	NA	19	True	AATAAA	-23	NA	49676007	49731444	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_+_49676196_49688127_49688476_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49728416_49728442_49731231
transcript_36263.known	chr16	+	1271	10	FSM	ENSMUSG00000055447.20	ENSMUST00000230281.2	1271	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	27.4352211222124	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTGGAATCCCATTTTT	NA	False	NA	19	True	AATAAA	-23	NA	49676018	49731444	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_49676196_49688127_49688476_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49728416_49728446_49731236
transcript_36266.nnic	chr16	+	1226	8	NIC	ENSMUSG00000055447.20	novel	1316	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_7	27.9335947254505	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTGGAATCCCATTTTT	NA	False	NA	19	True	AATAAA	-23	NA	49676007	49731444	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_+_49676196_49688127_49688476_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49731231
transcript_36268.known	chr16	-	4024	17	FSM	ENSMUSG00000022641.16	ENSMUST00000089404.10	4024	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	5.79836992179699	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACAAAAAAAAAGACAAAA	9715	False	NA	NA	False	TATAAA	-2	NA	50252752	50016978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_50018010_50020770_50020955_50022740_50022939_50040807_50040957_50043612_50043749_50044650_50045657_50061216_50061298_50068144_50068220_50071676_50071758_50082778_50082847_50086539_50086733_50094909_50095153_50100731_50100903_50140662_50140777_50151391_50151466_50249272_50249345_50252604
transcript_3627.known	chr1	+	9269	15	FSM	ENSMUSG00000026380.11	ENSMUST00000027629.10	9269	15	0	0	0	0	multi-exon	FALSE	canonical	3	1477	junction_7	202.362891350955	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGCTGGAACCTCAACTT	NA	False	NA	19	True	AATAAA	-20	NA	118555675	118612898	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_118555833_118559971_118560124_118580030_118580108_118580598_118580705_118581445_118581553_118584097_118584251_118586737_118586849_118589709_118589802_118592488_118592538_118592627_118592722_118593845_118593937_118596360_118596465_118597118_118597262_118603304_118603357_118605117
transcript_36272.known	chr16	-	4516	13	FSM	ENSMUSG00000022641.16	ENSMUST00000114477.8	4516	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_12	4.38669072941729	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAGCAAAACTTAAA	9715	False	NA	NA	False	NA	NA	NA	50252752	50038919	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_50040957_50043612_50043749_50044650_50045657_50061216_50061298_50068144_50068220_50071676_50071758_50082778_50082847_50086539_50086733_50094909_50095153_50100731_50100903_50151391_50151466_50249272_50249345_50252473
transcript_36273.nic	chr16	-	1698	11	ISM	ENSMUSG00000022641.16	ENSMUST00000089399.11	2539	14	-60	14369	-44	0	5prime_fragment	FALSE	canonical	1	5	junction_9	3.56230262611138	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAAGAAAAACAAACT	9670	False	NA	NA	False	NA	NA	NA	50252797	50045209	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_-_50045657_50061216_50061298_50068144_50068220_50071676_50071758_50082778_50082847_50086539_50086733_50094909_50095153_50100731_50100903_50151391_50151466_50249272_50249345_50252604
transcript_36274.known	chr16	-	8743	17	FSM	ENSMUSG00000022641.16	ENSMUST00000138166.8	8743	17	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_15	4.24079886342184	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTCAAATACATTTCTTT	9714	False	NA	-1	True	AATAAA	-35	NA	50252753	50012206	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_50018010_50020770_50020955_50022740_50022939_50029447_50029508_50040807_50040957_50043612_50043749_50044650_50045657_50061216_50061298_50068144_50068220_50071676_50071758_50082778_50082847_50086539_50086733_50094909_50095153_50100731_50100903_50151391_50151466_50249272_50249345_50252604
transcript_36277.known	chr16	-	2896	2	FSM	ENSMUSG00000022639.15	ENSMUST00000186535.2	2896	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGCTGAGTAGTACTCCA	NA	False	NA	NA	False	NA	NA	NA	50553091	50545987	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_50548573_50552780
transcript_36281.known	chr16	-	810	3	FSM	ENSMUSG00000022639.15	ENSMUST00000169791.4	810	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATCATACTTATGTAGAT	NA	False	NA	NA	False	AATAAA	-20	NA	50553051	50547798	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_50548020_50548254_50548573_50552780
transcript_36282.known	chr16	+	3728	19	FSM	ENSMUSG00000022637.12	ENSMUST00000227062.2	3728	19	0	0	0	0	multi-exon	TRUE	canonical	3	23	junction_2	15.6067609597354	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAAAGAGCTTCTCTTGT	NA	False	NA	NA	False	AATAAA	-29	NA	51851925	52025747	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_51852049_51852540_51852623_51853371_51853554_51867561_51867813_51932463_51932611_51951427_51951585_51956121_51956244_51959853_51959992_51961369_51961458_51963129_51963262_51972873_51973078_51984658_51984845_51986351_51986715_51994716_51994812_52003574_52003722_52006497_52006596_52009375_52009517_52014521_52014642_52024795
transcript_36285.nnic	chr16	-	1183	3	Intergenic	novelGene_52	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	6	junction_1	5	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTGTTTTTCCTTGAAA	NA	False	NA	NA	False	ATTAAA	-24	NA	55609204	55596649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr16_-_55596986_55600813_55601569_55609112
transcript_36286.nnic	chr16	-	428	2	Intergenic	novelGene_53	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTGTTTTTCCTTGAAA	NA	False	NA	NA	False	ATTAAA	-24	NA	55609204	55596649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr16_-_55596986_55609112
transcript_36287.known	chr16	-	3627	12	FSM	ENSMUSG00000035356.18	ENSMUST00000114458.8	3627	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	2.64418901313618	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTCTTTTCTAGTGCC	NA	False	NA	-10	True	AATAAA	-17	NA	55642501	55631737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_55633147_55634312_55634481_55634603_55634715_55636002_55636173_55636430_55636495_55636679_55636827_55637193_55637300_55638091_55638898_55639110_55639215_55639354_55639386_55639929_55640070_55642130
transcript_36294.nnic	chr16	-	1357	3	NNC	ENSMUSG00000075033.5	novel	6436	6	NA	NA	-125	-25632	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	2.5	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTGGTTC	NA	False	NA	NA	False	ATTAAA	-17	NA	55715773	55685947	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_55686914_55710944_55711213_55715650
transcript_36295.known	chr16	-	7911	11	FSM	ENSMUSG00000022604.19	ENSMUST00000023270.14	7911	11	0	0	0	0	multi-exon	TRUE	canonical	3	23	junction_5	7.29383301152419	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTGTGATATCTGGTTATT	NA	False	NA	-1	True	AATAAA	-15	NA	55755218	55720250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_55726233_55731917_55731994_55735219_55735995_55738900_55739026_55739765_55739931_55742433_55742601_55743289_55743404_55745331_55745434_55748083_55748243_55750828_55750972_55755115
transcript_3630.nic	chr1	+	816	7	ISM	ENSMUSG00000026380.11	ENSMUST00000027629.10	9269	15	-12	26109	-11	21293	5prime_fragment	FALSE	canonical	3	1618	junction_3	142.398989540735	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACGGCTCAAGAGAAGGAG	NA	False	NA	39	True	NA	NA	NA	118555663	118586789	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_118555833_118559971_118560124_118580030_118580108_118580598_118580705_118581445_118581553_118584097_118584251_118586737
transcript_36300.known	chr16	-	609	5	FSM	ENSMUSG00000022604.19	ENSMUST00000121703.3	609	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	14.2653426176871	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATAGTATCGAGTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	55755196	55744918	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_55745043_55745331_55745434_55748083_55748243_55750828_55750972_55755115
transcript_36301.known	chr16	-	989	5	FSM	ENSMUSG00000022604.19	ENSMUST00000121129.8	989	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	17.9495821678389	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAAAAGGAGATTGGATAT	NA	False	NA	NA	False	AATAAA	-13	NA	55755217	55744730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_55745214_55745331_55745434_55748083_55748243_55750828_55750972_55755115
transcript_36304.known	chr16	-	1057	4	FSM	ENSMUSG00000022604.19	ENSMUST00000122280.8	1057	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_3	6.0184900284226	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGATTGGATATTTTGTGC	NA	False	NA	NA	False	AATAAA	-20	NA	55755160	55744723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_55745434_55748083_55748243_55750828_55750972_55755115
transcript_36307.known	chr16	+	4920	11	FSM	ENSMUSG00000022601.12	ENSMUST00000050248.9	4920	11	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	21.3485362495886	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGGCGTTGAGCTTGAC	NA	False	NA	6	True	AATAAA	-27	NA	55794245	55829276	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_55794735_55800957_55801194_55802537_55802770_55810621_55811458_55811804_55811982_55818368_55818615_55820941_55821087_55823071_55823190_55826272_55826432_55826537_55826714_55827170
transcript_3631.known	chr1	+	478	3	FSM	ENSMUSG00000026380.11	ENSMUST00000190652.2	478	3	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_2	993	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGTCTTTGTAATTTTA	NA	False	NA	NA	False	NA	NA	NA	118555674	118565496	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_118555833_118559971_118560124_118565328
transcript_36326.known	chr16	-	2200	5	FSM	ENSMUSG00000071533.12	ENSMUST00000125040.8	2200	5	0	0	0	0	multi-exon	FALSE	canonical	3	494	junction_4	790.763357459107	1057	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTCTTATTTTCTTTC	NA	False	NA	NA	False	AATAAA	-16	NA	55850059	55835868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844750_55849965
transcript_36327.known	chr16	-	938	5	FSM	ENSMUSG00000071533.12	ENSMUST00000130818.8	938	5	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_4	876.141113063415	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATGTTTTATATACAGAT	NA	False	NA	NA	False	AATAAA	-24	NA	55850039	55837361	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55845001_55849965
transcript_3633.nic	chr1	+	713	2	ISM	ENSMUSG00000026380.11	ENSMUST00000190652.2	478	3	-11	4981	-11	-4981	5prime_fragment	FALSE	canonical	3	2048	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAACCAGGAGTGGTGATG	NA	False	NA	NA	False	NA	NA	NA	118555663	118560515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_118555833_118559971
transcript_36336.known	chr16	-	733	4	FSM	ENSMUSG00000071533.12	ENSMUST00000137736.8	733	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	968.279229699092	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTCTCCCTCGTTACCC	NA	False	NA	NA	False	NA	NA	NA	55850049	55837162	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55849965
transcript_36340.known	chr16	-	446	3	FSM	ENSMUSG00000071533.12	ENSMUST00000140227.2	446	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	806	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTAATAAATGAGAGTTTG	NA	False	NA	NA	False	NA	NA	NA	55850069	55837394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_55837681_55838834_55838891_55849965
transcript_36343.known	chr16	+	677	6	FSM	ENSMUSG00000098274.8	ENSMUST00000023269.5	677	6	0	0	0	0	multi-exon	FALSE	canonical	3	9815	junction_1	1495.09793659145	53839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTGCTGATTGATTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	55786637	55791798	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_55786802_55786909_55786986_55787422_55787534_55789872_55790010_55790474_55790539_55791673
transcript_36344.known	chr16	+	639	5	FSM	ENSMUSG00000098274.8	ENSMUST00000137811.8	639	5	0	0	0	0	multi-exon	FALSE	canonical	3	12575	junction_2	609.402371180159	5435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTGCTGATTGATTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	55786783	55791798	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_55786986_55787422_55787534_55789872_55790010_55790474_55790539_55791673
transcript_36345.known	chr16	+	306	2	FSM	ENSMUSG00000098274.8	ENSMUST00000128581.2	306	2	0	0	0	0	multi-exon	FALSE	canonical	3	12966	junction_1	0	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTGCTGATTGATTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	55790357	55791798	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_55790539_55791673
transcript_36346.known	chr16	-	2295	5	FSM	ENSMUSG00000071533.12	ENSMUST00000114444.9	2295	5	0	0	0	0	multi-exon	FALSE	canonical	3	1624	junction_1	369.138439477657	1887	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTCTTATTTTCTTTC	NA	False	NA	NA	False	AATAAA	-16	NA	55850102	55835868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844802_55849965
transcript_36347.known	chr16	-	3002	2	FSM	ENSMUSG00000044763.9	ENSMUST00000059052.9	3002	2	0	0	0	0	multi-exon	FALSE	canonical	3	404	junction_1	0	464	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTATATTTTTACTATTTT	7386	False	NA	NA	False	NA	NA	NA	55858182	55852971	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_55855655_55857863
transcript_3635.nnic	chr1	-	1187	2	NNC	ENSMUSG00000048402.15	novel	6637	14	NA	NA	-714	-184447	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	0	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGCAACTTGATCTGTG	515	False	NA	-13	True	NA	NA	NA	118982063	118980218	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_118980374_118981031
transcript_36351.known	chr16	+	1130	7	FSM	ENSMUSG00000052917.16	ENSMUST00000049128.11	1130	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_6	9.3407708461347	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTAATGACATTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	55895826	55946902	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_55895942_55902718_55902772_55909746_55909828_55917702_55917795_55931968_55932167_55944141_55944334_55946503
transcript_36354.nic	chr16	+	1050	7	ISM	ENSMUSG00000052917.16	ENSMUST00000202000.2	3218	8	-81	2659	-5	195	5prime_fragment	FALSE	canonical	3	17	junction_6	8.60232526704263	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAGATACCTAAGTATGTA	NA	False	NA	NA	False	AATAAA	-17	NA	55895761	55959601	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_+_55895942_55902718_55902772_55909746_55909828_55917702_55917795_55931968_55932167_55944141_55944334_55959347
transcript_3636.known	chr1	-	6637	14	FSM	ENSMUSG00000048402.15	ENSMUST00000062483.15	6637	14	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_11	11.3908506833309	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATCTTGTTGATCTGCTT	1229	False	NA	-3	True	ATTAAA	-17	NA	118981349	118761861	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_118765908_118767983_118768321_118769645_118769928_118772080_118772246_118773646_118773797_118776112_118776248_118780987_118781111_118782170_118782388_118783165_118783368_118794301_118794488_118795708_118795912_118818025_118818132_118929769_118929937_118981031
transcript_36361.known	chr16	+	914	6	FSM	ENSMUSG00000052917.16	ENSMUST00000201011.2	914	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	10.507140429251	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCCTTGCCTTGCTAGCC	NA	False	NA	NA	False	ACTAAA	-17	NA	55895842	55946783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_55895942_55902718_55902772_55917702_55917795_55931968_55932167_55944141_55944334_55946503
transcript_36364.known	chr16	+	698	6	FSM	ENSMUSG00000052917.16	ENSMUST00000202799.4	698	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	9.74884608556315	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGCAGGGTGATGATGGA	NA	False	NA	NA	False	NA	NA	NA	55895837	55959406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_55895942_55902718_55902772_55917702_55917795_55931968_55932167_55944141_55944334_55959347
transcript_36374.nnic	chr16	+	776	3	Intergenic	novelGene_54	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCAGTGATTGGCTTCTTT	NA	False	NA	NA	False	NA	NA	NA	55933700	55936690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr16_+_55934262_55934375_55934491_55936590
transcript_36375.known	chr16	+	1169	2	FSM	ENSMUSG00000052917.16	ENSMUST00000201476.2	1169	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTCTACTGATGAGTTT	NA	False	NA	NA	False	CATAAA	-16	NA	55895766	55897499	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_55895942_55896505
transcript_36383.known	chr16	-	1945	8	FSM	ENSMUSG00000022757.20	ENSMUST00000065515.14	1945	8	0	0	0	0	multi-exon	FALSE	canonical	3	474	junction_2	54.3950027716757	576	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTCTTGTTGCCTAAT	NA	False	NA	0	True	AATAAA	-16	NA	56537813	56510694	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_56511517_56514762_56514853_56517821_56517960_56521431_56521600_56524789_56524937_56525973_56526058_56532973_56533204_56537547
transcript_36389.known	chr16	-	2701	6	FSM	ENSMUSG00000022754.7	ENSMUST00000023435.6	2701	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	1.32664991614216	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGTGTGGTTGTGCTATT	6302	False	NA	NA	False	AATAAA	-13	NA	56706529	56625523	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_56627140_56631888_56632035_56642587_56642773_56643750_56643958_56646028_56646222_56706175
transcript_36390.known	chr16	+	5964	12	FSM	ENSMUSG00000022752.10	ENSMUST00000166897.3	5964	12	0	0	0	0	multi-exon	FALSE	canonical	3	1304	junction_5	122.457278770872	297	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTTGATGGGATATTAG	NA	False	NA	13	True	AATAAA	-15	NA	56942065	56977068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_56942558_56953439_56953614_56955015_56955143_56957060_56957171_56958392_56958542_56960941_56961150_56963083_56963219_56965053_56965162_56966392_56966510_56968095_56968194_56970182_56970306_56972945
transcript_36392.known	chr16	-	1286	10	FSM	ENSMUSG00000022751.10	ENSMUST00000023432.10	1286	10	0	0	0	0	multi-exon	TRUE	canonical	3	674	junction_8	39.9499687108764	2131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGATGTTTTTCTTCT	NA	False	NA	NA	False	ATTAAA	-19	NA	56987695	56977027	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_56977530_56977846_56977903_56979780_56979880_56980429_56980509_56981492_56981568_56982053_56982148_56983880_56983970_56984560_56984682_56986460_56986580_56987643
transcript_36394.known	chr16	-	3690	18	FSM	ENSMUSG00000022749.9	ENSMUST00000023431.8	3690	18	0	0	0	0	multi-exon	TRUE	canonical	3	134	junction_12	18.4520326427881	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGCCCTGGAGGATGTC	NA	False	NA	-4	True	AATAAA	-22	NA	57051867	56989224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_56990804_56991985_56992181_56993386_56993523_56998294_56998384_57003213_57003354_57004742_57004850_57007000_57007044_57009624_57009796_57011836_57011930_57012971_57013095_57018643_57018748_57019086_57019134_57019221_57019347_57028566_57028691_57032733_57032939_57034526_57034633_57038671_57038784_57051676
transcript_36395.known	chr16	-	853	5	FSM	ENSMUSG00000022749.9	ENSMUST00000227359.2	853	5	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_2	12.3364297914753	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATATATGTGTGTATAT	NA	False	NA	NA	False	NA	NA	NA	57051735	57028319	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_57028691_57032733_57032939_57034526_57034633_57038671_57038784_57051676
transcript_36397.nnic	chr16	-	2026	4	NNC	ENSMUSG00000022749.9	novel	3690	18	NA	NA	3678	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_3	80.5536398239638	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGCCCTGGAGGATGTC	NA	False	NA	-4	True	AATAAA	-22	NA	56994941	56989224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_56990804_56991985_56992181_56993386_56993523_56994825
transcript_36399.nnic	chr16	+	445	3	NNC	ENSMUSG00000097896.2	novel	349	2	NA	NA	-37	19919	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	5	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATATGGCTGCTGTATTT	NA	False	NA	NA	False	ATTAAA	-18	NA	57101215	57121778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_57101281_57101538_57101642_57121501
transcript_36401.nnic	chr16	+	455	3	NNC	ENSMUSG00000097896.2	novel	349	2	NA	NA	-19	19919	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	1.5	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATATGGCTGCTGTATTT	NA	False	NA	NA	False	ATTAAA	-18	NA	57101233	57121778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_57101309_57101538_57101642_57121501
transcript_36408.known	chr16	-	1150	10	FSM	ENSMUSG00000022748.9	ENSMUST00000114371.5	1150	10	0	0	0	0	multi-exon	TRUE	canonical	3	200	junction_5	24.152805731247	1583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACAGTTTCTCTTTCCCCT	NA	False	NA	-9	True	AATAAA	-32	NA	57427209	57122362	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_57122646_57124042_57124132_57127188_57127277_57127731_57127793_57131615_57131719_57133020_57133081_57136524_57136655_57138268_57138344_57143826_57143907_57427028
transcript_3641.nnic	chr1	-	453	3	NNC	ENSMUSG00000099860.2	novel	768	4	NA	NA	7318	-207	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	16	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCAGGGGCGTGGTCTGA	NA	False	NA	NA	False	NA	NA	NA	119247245	119233282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_119233438_119240673_119240768_119247041
transcript_36417.known	chr16	-	610	2	FSM	ENSMUSG00000022748.9	ENSMUST00000231282.2	610	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAATGAGTTTCAGAAGT	NA	False	NA	NA	False	NA	NA	NA	57427139	57264855	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_57265355_57427028
transcript_36418.known	chr16	-	529	2	FSM	ENSMUSG00000022748.9	ENSMUST00000232413.2	529	2	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	0	522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTATTTATGTTTTGTGAT	NA	False	NA	-1	True	AATAAA	-17	NA	57427227	57381795	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_57382126_57427028
transcript_36420.known	chr16	-	1918	12	FSM	ENSMUSG00000022747.18	ENSMUST00000114357.10	1918	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	2.05703790890632	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCCGTGGTGTCCATTGT	NA	False	NA	NA	False	NA	NA	NA	58344548	58290574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_58291091_58292673_58292827_58293771_58293910_58294016_58294204_58296212_58296309_58305125_58305190_58306757_58306862_58309266_58309345_58314042_58314225_58327810_58327978_58343864_58344036_58344486
transcript_36421.known	chr16	-	4123	11	FSM	ENSMUSG00000022747.18	ENSMUST00000137035.8	4123	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	1.74355957741627	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAAAATAACCAAGGGG	NA	False	NA	NA	False	ATTAAA	-3	NA	58343789	58288487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_58291091_58292673_58292827_58293771_58293910_58294016_58294204_58296212_58296309_58305125_58305190_58306757_58306862_58309266_58309345_58314042_58314225_58327810_58327978_58343438
transcript_36425.known	chr16	-	810	3	FSM	ENSMUSG00000022747.18	ENSMUST00000145283.2	810	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATAGTCGTTACATGTTTA	NA	False	NA	NA	False	NA	NA	NA	58344121	58323223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_58323610_58327810_58327978_58343864
transcript_36426.known	chr16	+	3097	7	FSM	ENSMUSG00000022742.7	ENSMUST00000060077.7	3097	7	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_2	26.4916129285394	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAAGTATTTGTTTCCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	58490654	58500749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_58491314_58492890_58493035_58493698_58493810_58494742_58494885_58495604_58495824_58498307_58498413_58499032
transcript_36429.known	chr16	+	1540	6	FSM	ENSMUSG00000022744.13	ENSMUST00000162057.8	1540	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	183.824916700648	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAAAAAAAAGTGAAAA	NA	False	NA	NA	False	NA	NA	NA	58548287	58553971	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_58548448_58549535_58549587_58549800_58550111_58551664_58551776_58552943_58553082_58553201
transcript_36431.known	chr16	+	2147	5	FSM	ENSMUSG00000022744.13	ENSMUST00000023426.12	2147	5	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_1	33.101170674162	697	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTTGAGATCACAACATG	NA	False	NA	24	True	AATAAA	-31	NA	58548272	58554614	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_58548448_58549800_58550111_58551664_58551776_58552943_58553082_58553201
transcript_36435.known	chr16	+	2159	10	FSM	ENSMUSG00000022724.16	ENSMUST00000023407.12	2159	10	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_9	29.2042614850793	504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGGCCGGTATATACATG	NA	False	NA	-44	True	NA	NA	NA	59292137	59312824	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_59292309_59295872_59296333_59299532_59299653_59300653_59300783_59303367_59303472_59306895_59306999_59307790_59307963_59309707_59309797_59311567_59311658_59312103
transcript_36442.nic	chr16	+	1861	9	ISM	ENSMUSG00000022724.16	ENSMUST00000023407.12	2159	10	-45	789	-45	4	5prime_fragment	FALSE	canonical	3	233	junction_3	27.4382830184398	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTGTAAGCTTGTGCAAAA	NA	False	NA	NA	False	ATTAAA	-18	NA	59292092	59312035	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_+_59292309_59295872_59296333_59299532_59299653_59300653_59300783_59303367_59303472_59306895_59306999_59307790_59307963_59309707_59309797_59311567
transcript_36449.known	chr16	-	1696	8	FSM	ENSMUSG00000022722.19	ENSMUST00000023405.16	1696	8	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_5	9.94064014692275	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTATTTTTATCCTTAACA	NA	False	NA	NA	False	AATAAA	-21	NA	59459530	59433311	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_59434208_59439157_59439214_59441581_59441712_59443383_59443479_59444240_59444310_59444642_59444705_59452673_59452824_59459292
transcript_36450.known	chr16	-	1554	9	FSM	ENSMUSG00000022722.19	ENSMUST00000099646.10	1554	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	44.8525361601772	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCAACTAGAGTGTTCTG	NA	False	NA	NA	False	AATAAA	-10	NA	59459754	59433690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_59434208_59439028_59439042_59439157_59439214_59441581_59441712_59443383_59443479_59444240_59444310_59444642_59444705_59452673_59452824_59459292
transcript_36451.known	chr16	-	3813	6	FSM	ENSMUSG00000050312.13	ENSMUST00000063089.12	3813	6	0	0	0	0	multi-exon	TRUE	canonical	3	18	junction_4	5.74804314527997	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATGCCTTTTTTTGACC	NA	False	NA	NA	False	ATTAAA	-18	NA	62607140	62552806	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_62555782_62589969_62590092_62591020_62591176_62596650_62596995_62606150_62606261_62607033
transcript_36453.known	chr16	-	3528	10	FSM	ENSMUSG00000022911.12	ENSMUST00000089289.6	3528	10	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	10.3494497975067	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCATTTATCTAATTTTAAAA	NA	False	NA	NA	False	AATAAA	-18	NA	62667403	62614047	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_62616072_62622084_62622154_62623082_62623200_62624199_62624426_62626904_62627011_62632211_62632415_62633521_62633628_62647526_62647777_62651105_62651177_62667047
transcript_36460.nic	chr16	-	1110	6	ISM	ENSMUSG00000022911.12	ENSMUST00000089289.6	3528	10	-18	12857	-18	5308	5prime_fragment	FALSE	canonical	3	47	junction_5	7.11617874986288	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGAGTTGTGGCAAGTGG	NA	False	NA	NA	False	NA	NA	NA	62667421	62626904	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_-_62627011_62632211_62632415_62633521_62633628_62647526_62647777_62651105_62651177_62667047
transcript_36464.known	chr16	+	3303	15	FSM	ENSMUSG00000022912.9	ENSMUST00000023629.9	3303	15	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_5	24.011476847711	283	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAGCAATTTCTTTATTT	NA	False	NA	NA	False	AATAAA	-22	NA	62674669	62749709	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_62674868_62705763_62705922_62709343_62709369_62719238_62719326_62720688_62720812_62720915_62721048_62723854_62723981_62728024_62728147_62730360_62730477_62734160_62734351_62738437_62738606_62739875_62740045_62744878_62745028_62746690_62746917_62748395
transcript_36468.known	chr16	-	5522	3	FSM	ENSMUSG00000059920.10	ENSMUST00000076991.7	5522	3	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_1	18.5	484	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCCTTATATTTTAAAGAA	NA	False	NA	NA	False	AATAAA	-39	NA	64591524	64582498	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_64587357_64589286_64589526_64591099
transcript_36469.known	chr16	-	6261	9	FSM	ENSMUSG00000047141.6	ENSMUST00000207826.2	6261	9	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_4	10.7812047100498	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAGTGTTCAGTTTTATG	NA	False	NA	-3	True	AATAAA	-20	NA	64672015	64600709	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_64603640_64604869_64607166_64608667_64608810_64611449_64611590_64612131_64612335_64614783_64614920_64634987_64635070_64650826_64650973_64671829
transcript_3647.known	chr1	-	2289	5	FSM	ENSMUSG00000004451.15	ENSMUST00000004565.15	2289	5	0	0	0	0	multi-exon	FALSE	canonical	3	967	junction_4	66.8169140263152	519	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGCCCTTTTTCCTGCAT	NA	False	NA	-4	True	AATAAA	-21	NA	119432524	119398034	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_119399556_119403624_119403803_119405644_119405854_119411223_119411387_119432306
transcript_36470.known	chr16	+	4425	3	FSM	ENSMUSG00000054604.8	ENSMUST00000067744.8	4425	3	0	0	0	0	multi-exon	FALSE	canonical	3	981	junction_2	152	663	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATATTTTGTTTTGTGAGC	NA	False	NA	21	True	AATAAA	-30	NA	64672358	64679870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_64672600_64673161_64673389_64675913
transcript_36472.known	chr16	-	1722	7	FSM	ENSMUSG00000004843.8	ENSMUST00000231259.2	1722	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	119.881422895941	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGCCTAACGCGCATCA	NA	False	NA	-8	True	AATAAA	-19	NA	65359406	65336013	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_65337137_65337305_65337413_65342162_65342266_65343734_65343930_65347848_65347941_65350904_65350961_65359360
transcript_36474.known	chr16	-	1872	6	FSM	ENSMUSG00000004843.8	ENSMUST00000004965.8	1872	6	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_5	16.0573970493352	545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGCCTAACGCGCATCA	NA	False	NA	-8	True	AATAAA	-19	NA	65359612	65336013	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_65337137_65337305_65337413_65342162_65342266_65343734_65343930_65347848_65347941_65359360
transcript_36475.known	chr16	+	2984	16	FSM	ENSMUSG00000022707.17	ENSMUST00000163832.8	2984	16	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	11.0445562256807	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACTAATGTGCTTTTTAT	NA	False	NA	NA	False	AATAAA	-21	NA	70110836	70366604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_70111184_70157745_70157916_70198621_70198742_70230436_70230559_70231401_70231538_70233815_70233907_70237997_70238208_70275193_70275310_70280708_70280837_70284915_70285015_70288821_70288933_70292115_70292288_70324004_70324190_70325767_70325899_70357911_70358030_70365876
transcript_36477.known	chr16	-	774	3	FSM	ENSMUSG00000052516.20	ENSMUST00000138852.3	774	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAAAGTGCCTGTGATTAA	NA	False	NA	NA	False	AATAAA	-18	NA	73729964	73717093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_73717683_73724911_73725066_73729933
transcript_36481.known	chr16	-	4237	5	FSM	ENSMUSG00000032932.16	ENSMUST00000046283.16	4237	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	5.78791845139511	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGAAGAAAGAGAAGG	3981	False	NA	NA	False	NA	NA	NA	75563709	75551909	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_75555337_75556302_75556471_75557983_75558198_75561831_75562173_75563622
transcript_36489.nnic	chr16	-	489	2	Genic_Genomic	ENSMUSG00000050299.9	novel	402	1	NA	NA	-84	59	multi-exon	FALSE	canonical	3	117	junction_1	0	572	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTACTTGCAAAGCAAACT	NA	False	NA	-2	True	AATAAA	-30	NA	76200624	76200079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr16_-_76200265_76200320
transcript_36493.known	chr16	-	402	1	FSM	ENSMUSG00000050299.9	ENSMUST00000052867.9	402	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18692	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTATTGCCACCCTGCCA	NA	False	NA	-61	True	NA	NA	NA	76200540	76200138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_76200100_76200500
transcript_36494.known	chr16	+	1657	8	FSM	ENSMUSG00000022865.15	ENSMUST00000114229.4	1657	8	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_7	23.9965983983955	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAATGAACATTTTAGA	NA	False	NA	NA	False	AATAAA	-15	NA	78098643	78156662	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_78098763_78122044_78122212_78125841_78126047_78130249_78130406_78131056_78131180_78131709_78131849_78133075_78133260_78156098
transcript_36496.known	chr16	+	5742	7	FSM	ENSMUSG00000022865.15	ENSMUST00000023572.15	5742	7	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_4	8.97527467855751	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGCGGTGTGGCTTTATT	NA	False	NA	20	True	AATAAA	-21	NA	78098383	78137648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_78098763_78122044_78122212_78125841_78126047_78130249_78130406_78131056_78131180_78131709_78131849_78133075
transcript_36500.known	chr16	-	1074	5	FSM	ENSMUSG00000109841.3	ENSMUST00000231981.2	1074	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.433012701892219	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAACTGTGTATGTGTT	NA	False	NA	NA	False	AGTAAA	-11	NA	78091903	78047755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_78048457_78048660_78048777_78050324_78050356_78052247_78052343_78091772
transcript_36502.nnic	chr16	-	1325	5	NNC	ENSMUSG00000022863.16	novel	1414	5	NA	NA	589	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	349.459135665388	181	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGGTTTTGTTCTGTGT	NA	False	NA	NA	False	AATAAA	-22	NA	78173109	78156747	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_78157427_78161689_78161898_78166000_78166139_78170132_78170312_78172988
transcript_36505.known	chr16	-	1271	5	FSM	ENSMUSG00000022864.15	ENSMUST00000114218.2	1271	5	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_4	107.072405408677	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCCAGGGTTACTCAATCA	3243	False	NA	-4	True	AATAAA	-13	NA	78373545	78341848	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373311
transcript_36506.known	chr16	-	2644	5	FSM	ENSMUSG00000022864.15	ENSMUST00000114220.9	2644	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_4	113.984648089118	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATACT	3253	False	NA	NA	False	NA	NA	NA	78373535	78340430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373346
transcript_36507.nic	chr16	-	1282	5	NIC	ENSMUSG00000022864.15	novel	1271	5	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	59	junction_4	108.368295640376	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCCAGGGTTACTCAATCA	3173	False	NA	-4	True	AATAAA	-13	NA	78373615	78341848	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373370
transcript_36508.known	chr16	-	1576	5	FSM	ENSMUSG00000022864.15	ENSMUST00000114219.8	1576	5	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_4	120.034370077907	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATTGCTATTTTGGGTAT	3243	False	NA	NA	False	TATAAA	-12	NA	78373545	78341576	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373278
transcript_36509.known	chr16	-	746	3	FSM	ENSMUSG00000022864.15	ENSMUST00000231272.2	746	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_2	124	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGTTTATTGGAAGACGC	3192	False	NA	NA	False	AATACA	-10	NA	78373596	78344593	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_78344980_78372808_78372943_78373370
transcript_36511.known	chr16	-	412	1	FSM	ENSMUSG00000097552.3	ENSMUST00000181937.3	412	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGGATGCTGGGCTAA	NA	False	NA	NA	False	NA	NA	NA	79711759	79711347	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_79711300_79711800
transcript_36515.known	chr16	-	523	2	FSM	ENSMUSG00000022889.8	ENSMUST00000133901.2	523	2	0	0	0	0	multi-exon	FALSE	canonical	3	1018	junction_1	0	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTCTCATTAAAGTATTTT	NA	False	NA	NA	False	NA	NA	NA	84532118	84531055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_84531502_84532041
transcript_36520.known	chr16	+	4370	10	FSM	ENSMUSG00000053062.17	ENSMUST00000114195.8	4370	10	0	0	0	0	multi-exon	TRUE	canonical	3	3263	junction_7	414.866630361679	7939	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATTTATGGTCTATGAAT	NA	False	NA	17	True	AATAAA	-20	NA	84571010	84622816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609987_84612056_84612157_84613153_84613262_84615647_84615664_84618147_84618191_84619674
transcript_3653.known	chr1	-	607	4	FSM	ENSMUSG00000098447.3	ENSMUST00000185095.3	607	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	4.32049379893857	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGATTTGAATCCCTTCT	NA	False	NA	NA	False	NA	NA	NA	119454089	119447819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_119447988_119448121_119448209_119448474_119448600_119453862
transcript_3654.known	chr1	+	681	2	FSM	ENSMUSG00000098923.2	ENSMUST00000183607.2	681	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTCTTACATTTCCATTT	NA	False	NA	NA	False	NA	NA	NA	119453902	119454959	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_119454278_119454653
transcript_36545.known	chr16	+	1998	4	FSM	ENSMUSG00000053062.17	ENSMUST00000098407.3	1998	4	0	0	0	0	multi-exon	FALSE	canonical	3	4189	junction_2	31.1555238547945	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGTCTTCAGAATAAACAT	NA	False	NA	NA	False	NA	NA	NA	84571273	84607884	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231
transcript_36546.known	chr16	+	659	7	FSM	ENSMUSG00000053062.17	ENSMUST00000138054.2	659	7	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_4	1434.94432722048	788	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTTACACTTGCAAAGTG	729	False	NA	-10	True	ATTAAA	-17	NA	84606294	84619774	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_84606385_84609786_84609987_84612056_84612157_84613153_84613262_84615645_84615664_84618147_84618191_84619674
transcript_36547.known	chr16	+	2202	10	FSM	ENSMUSG00000008976.17	ENSMUST00000114184.8	2202	10	0	0	0	0	multi-exon	FALSE	canonical	3	375	junction_1	83.9617784882715	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAATGATATCATTCTTTC	NA	False	NA	NA	False	AATAAA	-20	NA	84631812	84658203	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_84631912_84635968_84636072_84638216_84638362_84641169_84641255_84643011_84643258_84649347_84649543_84653349_84653404_84653921_84654063_84654267_84654461_84657262
transcript_36552.known	chr16	+	4987	10	FSM	ENSMUSG00000008976.17	ENSMUST00000009120.8	4987	10	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_1	99.7045016753055	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTGGTTTTTGTTTTC	NA	False	NA	6	True	AATAAA	-15	NA	84632011	84660667	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_84632432_84635968_84636072_84638216_84638362_84641169_84641255_84643011_84643258_84649347_84649543_84653349_84653404_84653921_84654063_84654267_84654461_84657262
transcript_36564.known	chr16	-	742	6	FSM	ENSMUSG00000022890.14	ENSMUST00000114191.8	742	6	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_5	3171.52603016277	9692	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTCCTTTAAATTCT	NA	False	NA	-2	True	AATAAA	-18	NA	84632391	84624758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_84624884_84625312_84625438_84628216_84628396_84630707_84630763_84631696_84631872_84632308
transcript_36576.known	chr16	-	809	5	FSM	ENSMUSG00000022890.14	ENSMUST00000023608.14	809	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_4	2792.56360715383	75055	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTCCTTTAAATTCT	NA	False	NA	-2	True	AATAAA	-18	NA	84632513	84624758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_84624884_84625312_84625438_84628216_84628396_84631696_84631872_84632308
transcript_3658.known	chr1	-	6442	25	FSM	ENSMUSG00000026383.15	ENSMUST00000052404.13	6442	25	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_7	8.61674322983393	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATGTTTTATGAGCTGT	NA	False	NA	-11	True	AATAAA	-13	NA	119576666	119472766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_119476926_119477616_119477748_119478251_119478294_119481935_119482011_119482781_119482873_119495525_119495591_119497774_119497904_119500535_119500634_119506643_119506808_119526734_119526851_119527927_119527968_119532957_119532986_119535716_119535824_119536846_119537017_119543075_119543146_119544130_119544220_119545093_119545182_119545283_119545405_119547896_119547950_119548404_119548450_119549615_119549695_119551655_119551699_119561274_119561380_119570206_119570389_119576514
transcript_36586.known	chr16	-	680	4	FSM	ENSMUSG00000022890.14	ENSMUST00000114193.8	680	4	0	0	0	0	multi-exon	FALSE	canonical	1	103	junction_3	3139.53779329945	7378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCTTTAAATTCTTTGGT	NA	False	NA	3	True	AATAAA	-23	NA	84631127	84624753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_84624884_84625312_84625438_84628216_84628396_84630881
transcript_3659.known	chr1	-	3370	25	FSM	ENSMUSG00000026383.15	ENSMUST00000163147.8	3370	25	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	20.0580754034102	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGATAATG	NA	False	NA	NA	False	TTTAAA	-37	NA	119576664	119475860	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_119476926_119477616_119477748_119478251_119478294_119481935_119482011_119482781_119482873_119495525_119495591_119497774_119497904_119500535_119500634_119506643_119506808_119526734_119526851_119527927_119527992_119532957_119532986_119535716_119535824_119536846_119537017_119543075_119543146_119544130_119544220_119545093_119545182_119545283_119545405_119547896_119547950_119548404_119548450_119549615_119549695_119551655_119551699_119561274_119561380_119570206_119570389_119576514
transcript_36594.known	chr16	-	203	2	FSM	ENSMUSG00000022890.14	ENSMUST00000155956.2	203	2	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTCGTGGACAAGATAAGA	NA	False	NA	NA	False	NA	NA	NA	84631893	84628256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_84628396_84631829
transcript_36595.known	chr16	-	3176	16	FSM	ENSMUSG00000022892.12	ENSMUST00000005406.12	3176	16	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_10	15.6480740738987	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAAGACGTTTCTTTGAAG	7331	False	NA	-6	True	AATAAA	-19	NA	84970646	84751330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_84752321_84759609_84759757_84762557_84762659_84768295_84768350_84774951_84775174_84810514_84810615_84812119_84812249_84821740_84821900_84822310_84822386_84827119_84827254_84853211_84853415_84876727_84876922_84879663_84879777_84900093_84900224_84917417_84917586_84970389
transcript_36596.known	chr16	+	998	2	FSM	ENSMUSG00000115469.2	ENSMUST00000227918.2	998	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATAAAAACACTCTGGAAAG	NA	False	NA	NA	False	NA	NA	NA	84876998	84880280	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_84877343_84879626
transcript_36597.known	chr16	+	1884	6	FSM	ENSMUSG00000044442.12	ENSMUST00000054442.11	1884	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_5	18.2931681236466	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTCAGCCTTTGTGTAGC	NA	False	NA	1	True	AATAAA	-26	NA	87151072	87165630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_87151275_87153065_87153153_87153785_87153877_87159407_87159492_87163026_87163169_87164352
transcript_36598.known	chr16	+	1700	5	FSM	ENSMUSG00000044442.12	ENSMUST00000118310.8	1700	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	45.8768732587564	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTCAGCCTTTGTGTAGC	NA	False	NA	1	True	AATAAA	-26	NA	87151114	87165630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_87151275_87153065_87153153_87153785_87153877_87159407_87159492_87164352
transcript_36599.known	chr16	+	1951	5	FSM	ENSMUSG00000044442.12	ENSMUST00000118115.2	1951	5	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_4	12.0208152801713	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGTGG	NA	False	NA	NA	False	AAGAAA	-23	NA	87151132	87164573	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_87151275_87153065_87153153_87153785_87153877_87159407_87159492_87163026
transcript_36600.known	chr16	-	7743	30	FSM	ENSMUSG00000052299.10	ENSMUST00000039449.9	7743	30	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_26	19.3535231547588	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCTGGCCCATTCTTCCT	NA	False	NA	NA	False	AATAAA	-17	NA	87229500	87173538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_87175896_87176563_87176732_87177554_87177750_87178349_87178571_87179502_87179675_87191409_87191597_87194041_87194117_87194674_87194913_87195539_87195754_87196900_87197052_87197216_87197353_87198913_87199057_87200893_87200999_87202413_87202574_87205587_87205775_87206189_87206335_87207194_87207349_87208506_87208747_87209262_87209450_87212041_87212084_87212438_87213249_87215322_87215459_87217060_87217252_87217696_87217871_87220285_87220467_87221716_87221770_87222455_87222687_87223133_87223233_87224476_87224681_87229313
transcript_36601.known	chr16	-	2360	12	FSM	ENSMUSG00000052299.10	ENSMUST00000232095.2	2360	12	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	51.9704302448489	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTCTCTTTCCTACTCAG	NA	False	NA	NA	False	NA	NA	NA	87229451	87210075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_87210177_87212041_87212084_87212438_87213249_87215322_87215459_87217060_87217252_87217696_87217871_87220285_87220467_87221716_87221770_87222455_87222687_87223133_87223233_87224476_87224681_87229313
transcript_36603.known	chr16	-	2009	5	FSM	ENSMUSG00000041079.13	ENSMUST00000039101.12	2009	5	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	7.71362431027076	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGCTTGTTATCAGTAG	NA	False	NA	-4	True	AATAAA	-17	NA	87237461	87230294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_87231515_87233460_87233824_87233951_87234020_87234181_87234403_87237324
transcript_36607.known	chr16	+	3205	18	FSM	ENSMUSG00000025616.15	ENSMUST00000026710.12	3205	18	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_5	31.0441141639032	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTATTAGAGTTTAAGT	NA	False	NA	10	True	AATAAA	-18	NA	87251590	87280405	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_87251991_87255528_87255631_87258852_87259029_87261622_87261727_87263140_87263245_87266562_87266751_87267241_87267338_87268599_87268731_87268968_87269057_87269994_87270074_87271469_87271562_87272304_87272362_87273601_87273776_87276013_87276678_87277762_87277858_87278601_87278689_87279747_87279905_87279994
transcript_3661.known	chr1	-	6870	17	FSM	ENSMUSG00000026383.15	ENSMUST00000191046.7	6870	17	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	22.0620573609988	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACACGTGA	NA	False	NA	NA	False	NA	NA	NA	119576730	119518471	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_119523790_119526734_119526851_119527927_119527968_119532957_119532986_119535716_119535824_119536846_119537017_119543075_119543146_119544130_119544220_119545093_119545182_119545283_119545405_119547896_119547950_119548404_119548450_119549615_119549695_119551655_119551699_119561274_119561380_119570206_119570389_119576514
transcript_3662.nnic	chr1	-	1452	3	NNC	ENSMUSG00000026383.15	novel	6442	25	NA	NA	24	-14412	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	47.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACCTTGAAAAGGCTCTTG	NA	False	NA	NA	False	ATTAAA	-15	NA	119576706	119564092	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_119565171_119570206_119570389_119576514
transcript_36628.known	chr16	+	1405	7	FSM	ENSMUSG00000025616.15	ENSMUST00000131206.8	1405	7	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_5	32.3045404445464	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTTGTCTCTACCTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	87251930	87267912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_87251991_87255528_87255631_87258852_87259029_87261622_87261727_87263140_87263245_87266562_87266751_87267241
transcript_3663.known	chr1	-	3341	2	FSM	ENSMUSG00000036975.6	ENSMUST00000037906.6	3341	2	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	0	303	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCCAGCCTTAAGTTTTTT	NA	False	NA	NA	False	AATAAA	-21	NA	119840938	119835619	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_119838885_119840862
transcript_36630.known	chr16	-	2394	15	FSM	ENSMUSG00000025613.14	ENSMUST00000026704.14	2394	15	0	0	0	0	multi-exon	FALSE	canonical	3	4287	junction_9	381.591725405517	9088	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAGGTGAACATAATTTAT	NA	False	NA	-13	True	AATAAA	-28	NA	87292761	87280213	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
transcript_36632.known	chr16	+	5867	5	FSM	ENSMUSG00000025612.6	ENSMUST00000026703.6	5867	5	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_3	14.497844667398	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGAGTTGTACATTTCTGT	NA	False	NA	22	True	AATAAA	-25	NA	87495832	87530234	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_87495945_87512218_87512513_87515694_87517039_87519289_87519497_87526324
transcript_3664.known	chr1	-	1311	2	FSM	ENSMUSG00000050777.8	ENSMUST00000056089.8	1311	2	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTCCTATGACTCTTTT	NA	False	NA	NA	False	NA	NA	NA	120001804	119995106	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_119996055_120001441
transcript_36643.known	chr16	+	641	5	FSM	ENSMUSG00000022982.11	ENSMUST00000023707.11	641	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	320.427351360648	3582	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAACTGTGTGACTCCTTTG	NA	False	NA	19	True	ATTAAA	-18	NA	90017641	90023217	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_90017818_90019667_90019765_90021243_90021314_90022032_90022151_90023037
transcript_36645.known	chr16	+	5393	11	FSM	ENSMUSG00000053414.9	ENSMUST00000065856.8	5393	11	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	15.4272486205415	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGCTGCTTTGTTTATT	NA	False	NA	9	True	AATATA	-43	NA	90182900	90296441	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_90183605_90229401_90229695_90244197_90244254_90250567_90250704_90261028_90261157_90269331_90269468_90272707_90272871_90278137_90278222_90284746_90284795_90290300_90290482_90292977
transcript_36646.nnic	chr16	+	439	2	NNC	ENSMUSG00000053414.9	novel	3068	11	NA	NA	-35	-75472	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATGTCTAAGACTTCTT	NA	False	NA	NA	False	ATTAAA	-44	NA	90197396	90203440	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_90197506_90203110
transcript_36651.known	chr16	-	1333	5	FSM	ENSMUSG00000022978.12	ENSMUST00000099554.5	1333	5	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_1	13.865424623862	1349	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGTTTGGTTTTTTTTTT	NA	False	NA	0	True	AATAAA	-25	NA	90524292	90516199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_90516867_90517541_90517639_90518523_90518647_90523180_90523248_90523913
transcript_36652.known	chr16	+	1001	3	FSM	ENSMUSG00000039956.10	ENSMUST00000038197.3	1001	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGCTTCCCTCTATCTA	NA	False	NA	NA	False	AATAAA	-22	NA	90535211	90546673	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_90535558_90544411_90544512_90546118
transcript_36653.known	chr16	-	1218	5	FSM	ENSMUSG00000039929.15	ENSMUST00000140942.8	1218	5	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	7.22841614740048	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATTAAAAAAAAAAAAAAAG	8690	False	NA	NA	False	NA	NA	NA	90607269	90596394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_90597005_90600214_90600348_90601335_90601488_90602285_90602426_90607086
transcript_36654.known	chr16	-	2183	15	FSM	ENSMUSG00000039929.15	ENSMUST00000142955.8	2183	15	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	13.5367979211918	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATGTTTTCTTTGTTTAT	8679	False	NA	NA	False	AGTAAA	-14	NA	90607280	90580030	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_90580284_90582989_90583103_90584215_90584333_90584971_90585102_90585822_90585997_90587962_90588101_90589573_90589770_90592248_90592374_90593245_90593381_90594780_90594867_90596907_90597005_90600214_90600348_90601335_90601488_90602285_90602426_90607086
transcript_36655.known	chr16	+	2142	8	FSM	ENSMUSG00000039903.19	ENSMUST00000037539.15	2142	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	3.62530786869986	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTAAGTTCACTCCACAG	NA	False	NA	NA	False	NA	NA	NA	90627746	90701773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_90628321_90663142_90663340_90666453_90666578_90672926_90673080_90687417_90687562_90691465_90691544_90694251_90694342_90700991
transcript_36656.known	chr16	+	1937	7	FSM	ENSMUSG00000039903.19	ENSMUST00000152223.3	1937	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.5075705472861	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTAAGTTCACTCCACAG	NA	False	NA	NA	False	NA	NA	NA	90627754	90701773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_90628321_90666453_90666578_90672926_90673080_90687417_90687562_90691465_90691544_90694251_90694342_90700991
transcript_36657.known	chr16	+	1692	6	FSM	ENSMUSG00000039903.19	ENSMUST00000231280.2	1692	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	5.2687759489278	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTAAGTTCACTCCACAG	NA	False	NA	NA	False	NA	NA	NA	90627875	90701773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_90628321_90672926_90673080_90687417_90687562_90691465_90691544_90694251_90694342_90700991
transcript_36667.known	chr16	-	1430	7	FSM	ENSMUSG00000022972.11	ENSMUST00000023694.11	1430	7	0	0	0	0	multi-exon	FALSE	canonical	3	724	junction_4	16.7994708911389	2999	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGTGTCATGAGAGC	NA	False	NA	2	True	NA	NA	NA	90732002	90722696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_90722971_90723232_90723329_90723985_90724118_90724237_90724397_90726803_90726872_90727881_90728050_90731469
transcript_36669.known	chr16	-	3973	18	FSM	ENSMUSG00000022974.13	ENSMUST00000118522.8	3973	18	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_10	93.8519042470415	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGTTGTATCTTGCTGG	NA	False	NA	0	True	ATTAAA	-18	NA	90841431	90810924	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_90812067_90813733_90813889_90816050_90816198_90818938_90819006_90819556_90819634_90820225_90820348_90822034_90822180_90822383_90822584_90823917_90824034_90824117_90824218_90827320_90827445_90830985_90831176_90831687_90831906_90832806_90832911_90833355_90833578_90834129_90834307_90839440_90839570_90840893
transcript_36673.known	chr16	-	947	2	FSM	ENSMUSG00000022973.19	ENSMUST00000156140.2	947	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTGTGTTTCGTTCATTT	2446	False	NA	NA	False	AATAAA	-12	NA	90807951	90806201	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_90807058_90807860
transcript_36675.known	chr16	+	3047	9	FSM	ENSMUSG00000022971.19	ENSMUST00000023693.14	3047	9	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_7	21.683807322516	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATAGTCTTTTTGAATC	NA	False	NA	9	True	AATACA	-21	NA	91169670	91202477	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_91169963_91180748_91180842_91181870_91181913_91182829_91182954_91184831_91185005_91188608_91188767_91190644_91190802_91196105_91196234_91200597
transcript_36676.known	chr16	+	1099	7	FSM	ENSMUSG00000022971.19	ENSMUST00000117836.8	1099	7	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_6	3.19722101554181	816	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGGCTCTGTCTCTAAT	NA	False	NA	8	True	AATAAA	-20	NA	91169737	91190928	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_91169963_91180748_91180842_91181870_91181913_91182829_91182954_91184831_91185005_91188608_91188767_91190644
transcript_36678.known	chr16	+	1850	7	FSM	ENSMUSG00000022969.14	ENSMUST00000023691.12	1850	7	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	1.63299316185545	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGGTTTGTTCTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	91203122	91222722	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_91203261_91204505_91204630_91208770_91208929_91211500_91211668_91216219_91216368_91218620_91218779_91221765
transcript_36679.known	chr16	+	807	6	FSM	ENSMUSG00000022971.19	ENSMUST00000134491.9	807	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	21.5462293684997	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAATCTCCCTTAAAAT	NA	False	NA	NA	False	NA	NA	NA	91169728	91190751	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_91169963_91180748_91180842_91181870_91181913_91184831_91185005_91188608_91188767_91190644
transcript_3668.known	chr1	-	396	4	FSM	ENSMUSG00000026385.17	ENSMUST00000128408.8	396	4	0	0	0	0	multi-exon	FALSE	canonical	1	15	junction_3	1283.60975378033	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGGCCAGCGTTAACCTCT	NA	False	NA	-90	True	NA	NA	NA	120047900	120041098	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_120041264_120044115_120044179_120047624_120047743_120047850
transcript_36681.known	chr16	+	1151	3	FSM	ENSMUSG00000084866.3	ENSMUST00000231422.2	1151	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTAGCCATTTCTGCCTG	NA	False	NA	NA	False	AATAAA	-24	NA	91261912	91267016	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_91262525_91264631_91264714_91266559
transcript_36682.known	chr16	+	3909	11	FSM	ENSMUSG00000022967.14	ENSMUST00000023689.11	3909	11	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_4	11.4908659377786	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATATTTTCTTTATTTA	NA	False	NA	24	True	NA	NA	NA	91282125	91304329	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_91282305_91286583_91286708_91289518_91289698_91292036_91292192_91292278_91292421_91293031_91293150_91296291_91296492_91296743_91296878_91298509_91298658_91300272_91300416_91301942
transcript_36689.known	chr16	+	2234	2	FSM	ENSMUSG00000022967.14	ENSMUST00000145008.2	2234	2	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAATTTAAG	NA	False	NA	NA	False	NA	NA	NA	91282164	91288677	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_91282305_91286583
transcript_3669.known	chr1	-	491	4	FSM	ENSMUSG00000026385.17	ENSMUST00000151708.3	491	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1290.6796659125	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTAATGTAGATGATATGG	NA	False	NA	-121	True	NA	NA	NA	120048667	120041129	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_120041264_120044115_120044179_120047624_120047743_120048491
transcript_36691.nnic	chr16	-	396	2	Antisense	novelGene_ENSMUSG00000022967.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	18	junction_1	0	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCACGTGCATTTCACAC	NA	False	NA	NA	False	AATAAA	-34	NA	91293302	91291940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr16_-_91292210_91293175
transcript_36693.nnic	chr16	-	371	2	Antisense	novelGene_ENSMUSG00000022967.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_1	0	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCACGTGCATTTCACAC	NA	False	NA	NA	False	AATAAA	-34	NA	91293317	91291940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr16_-_91292210_91293215
transcript_36695.known	chr16	+	3708	7	FSM	ENSMUSG00000022965.9	ENSMUST00000023687.9	3708	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_6	4.14996653266291	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGATTGACTCCTGTGCTA	NA	False	NA	NA	False	AATAAA	-12	NA	91343959	91362511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_91344121_91351835_91351969_91354772_91354967_91356864_91357014_91357432_91357593_91358507_91358666_91359758
transcript_36696.known	chr16	-	2347	7	FSM	ENSMUSG00000022964.15	ENSMUST00000023686.15	2347	7	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_3	6.43989302878722	160	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGGAATCTGAGTCTTTT	NA	False	NA	-6	True	AATAAA	-24	NA	91394688	91371390	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_91373047_91374861_91374920_91377089_91377183_91378582_91378651_91380163_91380277_91383829_91383970_91394469
transcript_36704.known	chr16	-	3368	2	FSM	ENSMUSG00000039763.11	ENSMUST00000049244.10	3368	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTGGTCCATTGATCT	9249	False	NA	NA	False	AATAAA	-16	NA	91415887	91411141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_91414268_91415645
transcript_36705.known	chr16	-	3246	21	FSM	ENSMUSG00000022962.16	ENSMUST00000156713.8	3246	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	429.171000301745	525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTAGCATTTATTTAAGA	1507	False	NA	NA	False	AATAAA	-23	NA	91440034	91418280	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433390_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844
transcript_36706.known	chr16	-	3276	22	FSM	ENSMUSG00000022962.16	ENSMUST00000232289.2	3276	22	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_21	338.409230453656	725	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAAACTTATCTAGCA	NA	False	NA	NA	False	AATAAA	-12	NA	91443819	91418291	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440032_91443771
transcript_36707.known	chr16	-	1852	11	FSM	ENSMUSG00000022962.16	ENSMUST00000231380.2	1852	11	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_10	453.295984981116	583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTTTTGATTTTTTTTTT	NA	False	NA	-2	True	AATAAA	-22	NA	91443813	91430292	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440032_91443771
transcript_36708.known	chr16	-	455	3	FSM	ENSMUSG00000022962.16	ENSMUST00000231863.2	455	3	0	0	0	0	multi-exon	FALSE	canonical	3	1967	junction_1	106.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	1570	False	NA	NA	False	TATAAA	-17	NA	91439971	91438042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_91438275_91438481_91438578_91439844
transcript_36709.known	chr16	+	7529	7	FSM	ENSMUSG00000022961.19	ENSMUST00000119368.8	7529	7	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_6	146.545120090101	1477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTTGTGCAAAATCACGC	NA	False	NA	8	True	AATAAA	-19	NA	91444766	91462596	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_91444873_91448517_91448685_91451498_91457469_91458988_91459150_91461085_91461233_91461521_91461711_91461807
transcript_3671.known	chr1	-	569	4	FSM	ENSMUSG00000026385.17	ENSMUST00000027634.13	569	4	0	0	0	0	multi-exon	FALSE	canonical	3	2709	junction_1	24.2532930181083	18328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTGTTGTCTGGGTGCGT	NA	False	NA	-1	True	ATTAAA	-29	NA	120048808	120041009	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_120041264_120044115_120044179_120047624_120047743_120048674
transcript_36711.known	chr16	+	7945	5	FSM	ENSMUSG00000022961.19	ENSMUST00000114036.9	7945	5	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_4	147.892697588488	969	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCAGCCATTGTGTGTTT	NA	False	NA	4	True	NA	NA	NA	91444767	91460921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_91444873_91448517_91448685_91451498_91457469_91458988_91459150_91459379
transcript_36712.known	chr16	-	308	2	FSM	ENSMUSG00000022960.14	ENSMUST00000231425.2	308	2	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGGAAGTCATCCCTGC	6649	False	NA	NA	False	NA	NA	NA	91478278	91476840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_91476915_91478044
transcript_36714.known	chr16	+	2449	11	FSM	ENSMUSG00000022961.19	ENSMUST00000122302.8	2449	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	119.200209731359	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAACACATATAACTAAGC	NA	False	NA	40	True	AATAAA	-27	NA	91444772	91476109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_91444873_91448517_91448685_91458988_91459150_91461085_91461233_91461521_91461711_91467351_91467463_91468236_91468354_91472288_91472437_91474292_91474365_91474476_91474593_91474988
transcript_3672.known	chr1	-	604	4	FSM	ENSMUSG00000026385.17	ENSMUST00000132118.2	604	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1287.28974550755	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGGGTTACTCTGTTGT	NA	False	NA	-11	True	ATTAAA	-19	NA	120048747	120041019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_120041264_120044115_120044179_120047518_120047743_120048674
transcript_36738.known	chr16	-	1154	10	FSM	ENSMUSG00000058240.15	ENSMUST00000114023.3	1154	10	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	469.417790170329	458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTTTTTTCTCTTTTTT	9102	False	NA	NA	False	AATAAA	-24	NA	91525589	91491225	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_91491554_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
transcript_36739.known	chr16	-	1128	2	FSM	ENSMUSG00000058240.15	ENSMUST00000144877.3	1128	2	0	0	0	0	multi-exon	FALSE	canonical	3	1721	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAAATTCTCTTTTTTCTC	NA	False	NA	NA	False	AATAAA	-18	NA	91496176	91491231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_91492248_91496064
transcript_36740.known	chr16	-	762	6	FSM	ENSMUSG00000058240.15	ENSMUST00000141664.9	762	6	0	0	0	0	multi-exon	FALSE	canonical	3	1466	junction_2	55.2268050859363	469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTATTTGGTTTTTGTT	9203	False	NA	NA	False	TTTAAA	-2	NA	91525488	91503730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
transcript_36741.known	chr16	-	600	3	FSM	ENSMUSG00000058240.15	ENSMUST00000128975.8	600	3	0	0	0	0	multi-exon	FALSE	canonical	3	1575	junction_1	12	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGTAGG	9205	False	NA	NA	False	NA	NA	NA	91525486	91511227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_91511715_91514291_91514364_91525445
transcript_36742.known	chr16	-	512	3	FSM	ENSMUSG00000058240.15	ENSMUST00000123751.2	512	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	797.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGCCCCTGATTTTTCT	9195	False	NA	NA	False	AATAAA	-21	NA	91525496	91511905	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_91512295_91514291_91514364_91525445
transcript_36743.known	chr16	+	6103	16	FSM	ENSMUSG00000022957.21	ENSMUST00000095909.10	6103	16	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_12	15.0928975202098	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGTCTCCTGAAAGTTTT	NA	False	NA	NA	False	AATAAA	-24	NA	91526257	91629241	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_91526488_91579048_91579109_91580950_91581044_91582175_91582240_91590494_91590656_91598414_91598595_91599922_91600020_91602980_91603082_91608977_91609042_91612289_91612428_91613732_91613846_91615295_91615559_91617338_91617489_91617566_91617708_91624748_91624837_91625081
transcript_36744.known	chr16	+	1167	7	FSM	ENSMUSG00000022957.21	ENSMUST00000232198.2	1167	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	3.24893144826965	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTATGGTCTCATCATGG	NA	False	NA	NA	False	NA	NA	NA	91700950	91709088	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_91701102_91702174_91702388_91703645_91703768_91705290_91705374_91705653_91705738_91706092_91706267_91708748
transcript_36745.known	chr16	+	1562	7	FSM	ENSMUSG00000022957.21	ENSMUST00000231852.2	1562	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.09945795874961	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTTTGGAGAACTGTG	NA	False	NA	NA	False	TATAAA	-22	NA	91700916	91709224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_91701327_91702174_91702388_91703645_91703768_91705290_91705374_91705653_91705738_91706092_91706267_91708748
transcript_36747.nic	chr16	+	987	5	ISM	ENSMUSG00000022957.21	ENSMUST00000126374.3	793	7	7253	-237	-962	74	3prime_fragment	FALSE	canonical	3	118	junction_2	8.03118920210451	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTTGCTATTTTGGTTT	3303	False	NA	15	True	AATAAA	-14	NA	91657951	91667459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_+_91658128_91660144_91660267_91664907_91665026_91666505_91666698_91667080
transcript_36748.nnic	chr16	+	929	3	Intergenic	novelGene_55	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGCCTCCACAGTGACATAC	NA	False	NA	NA	False	NA	NA	NA	91694331	91700830	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr16_+_91694837_91699252_91699465_91700618
transcript_36749.known	chr16	-	710	7	FSM	ENSMUSG00000022956.12	ENSMUST00000139277.8	710	7	0	0	0	0	multi-exon	FALSE	canonical	1	32	junction_6	2358.49822745087	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGCTCAGCAAGGCCATG	1224	False	NA	-100	True	NA	NA	NA	91728162	91722200	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_91722280_91722428_91722516_91723346_91723460_91723740_91723871_91725786_91725898_91727241_91727293_91728023
transcript_36754.known	chr16	-	838	7	FSM	ENSMUSG00000022956.12	ENSMUST00000023677.10	838	7	0	0	0	0	multi-exon	FALSE	canonical	3	5653	junction_6	394.832348387684	28751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGAGGAGCCTTGTCCTTT	811	False	NA	-1	True	AATAAA	-20	NA	91728575	91722101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_91722280_91722428_91722516_91723346_91723460_91723740_91723871_91725786_91725898_91727241_91727293_91728407
transcript_36755.known	chr16	-	560	6	FSM	ENSMUSG00000022956.12	ENSMUST00000155452.8	560	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	2452.38509210931	690	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGGGCGTGAGGAGCCTT	952	False	NA	-8	True	AATAAA	-13	NA	91728434	91722108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_91722280_91722428_91722516_91723346_91723460_91725786_91725898_91727241_91727293_91728407
transcript_36758.nnic	chr16	+	1327	4	NNC	ENSMUSG00000116930.2	novel	1268	4	NA	NA	124430	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1.69967317119759	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCATGGTCATGGTGTC	NA	False	NA	NA	False	NA	NA	NA	91979633	91984230	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_91979896_91981797_91981879_91983202_91983620_91983663
transcript_36759.nnic	chr16	+	1182	4	NNC	ENSMUSG00000116930.2	novel	1268	4	NA	NA	124430	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1.69967317119759	18	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCATGGTCATGGTGTC	NA	False	NA	NA	False	NA	NA	NA	91979633	91984230	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_91979896_91981797_91981879_91983347_91983620_91983663
transcript_36767.known	chr16	+	846	3	FSM	ENSMUSG00000039680.11	ENSMUST00000047429.9	846	3	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_1	10.5	1475	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACGGCTGTATTGCTTCT	6285	False	NA	5	True	AATAAA	-17	NA	91855157	91909115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_91855369_91896481_91896622_91908620
transcript_36768.known	chr16	+	10913	2	FSM	ENSMUSG00000089774.3	ENSMUST00000113975.3	10913	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTCTGTGCCTCAGTGTG	6337	False	NA	12	True	AATAAA	-13	NA	91855209	91884361	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_91855369_91873607
transcript_36769.known	chr16	+	517	4	FSM	ENSMUSG00000051989.12	ENSMUST00000063641.11	517	4	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_1	48.3482735529983	1405	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTCTGCATTCTCTCT	NA	False	NA	26	True	AATAAA	-16	NA	92098173	92109929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_92098232_92102175_92102286_92107688_92107858_92109749
transcript_36770.known	chr16	-	2190	4	FSM	ENSMUSG00000022951.17	ENSMUST00000023672.10	2190	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	123.764112551077	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGACGTTGTTGGTCGTTTT	NA	False	NA	-5	True	AATAAA	-22	NA	92196965	92188842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_92190517_92192753_92192914_92194150_92194325_92196783
transcript_36772.known	chr16	-	2319	4	FSM	ENSMUSG00000022951.17	ENSMUST00000232239.2	2319	4	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_3	18.4932420089069	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGACGTTGTTGGTCGTTTT	NA	False	NA	-5	True	AATAAA	-22	NA	92263031	92188842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_92190517_92192753_92192914_92194150_92194325_92262720
transcript_36773.known	chr16	-	1506	4	FSM	ENSMUSG00000022951.17	ENSMUST00000232197.2	1506	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	133.157383906747	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGCATATCTTAGTACCT	NA	False	NA	NA	False	GATAAA	-16	NA	92267755	92189397	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_92190517_92192753_92192914_92194150_92194325_92267702
transcript_36774.nnic	chr16	+	991	4	NNC	ENSMUSG00000051297.9	novel	706	3	NA	NA	-7820	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.816496580927726	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATATTGGTCTAGAGTTG	NA	False	NA	NA	False	NA	NA	NA	92267809	92294254	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_92267966_92275500_92275857_92288901_92289064_92293937
transcript_36776.nnic	chr16	+	641	3	NNC	ENSMUSG00000051297.9	novel	706	3	NA	NA	-7826	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.5	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATATTGGTCTAGAGTTG	NA	False	NA	NA	False	NA	NA	NA	92267803	92294254	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_92267966_92288901_92289064_92293937
transcript_36778.nnic	chr16	+	835	3	NNC	ENSMUSG00000051297.9	novel	706	3	NA	NA	-7820	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTCTAGAGTTGGTGTGT	NA	False	NA	NA	False	NA	NA	NA	92267809	92294260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_92267966_92275500_92275857_92293937
transcript_36779.known	chr16	+	706	3	FSM	ENSMUSG00000051297.9	ENSMUST00000160494.3	706	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	0.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATATTGGTCTAGAGTTG	NA	False	NA	NA	False	NA	NA	NA	92275629	92294254	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_92275857_92288901_92289064_92293937
transcript_36786.known	chr16	-	1826	12	FSM	ENSMUSG00000022948.17	ENSMUST00000233931.2	1826	12	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_11	41.4330087596355	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGCAGACTGTCTTAG	NA	False	NA	-4	True	AATAAA	-18	NA	93400703	93380347	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400024_93400100_93400453
transcript_36789.nic	chr16	-	1885	11	NIC	ENSMUSG00000022948.17	novel	1816	12	NA	NA	117	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_10	28.7090578041147	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGTCTTAGTCG	NA	False	NA	-1	True	AATAAA	-21	NA	93400834	93380344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400453
transcript_36791.nnic	chr16	-	1757	11	NIC	ENSMUSG00000022948.17	novel	1816	12	NA	NA	-163	0	combination_of_known_splicesites	TRUE	canonical	3	12	junction_10	36.3512035564161	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGTCTTAGTCG	NA	False	NA	-1	True	AATAAA	-21	NA	93401114	93380344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400861
transcript_3680.nnic	chr1	+	532	6	NNC	ENSMUSG00000026388.16	novel	488	6	NA	NA	-19	3211	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_5	18.5515498004884	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGAAGCTCACTTGCTG	NA	False	NA	NA	False	AATAAA	-16	NA	120048897	120104507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_120048948_120078332_120078478_120088335_120088387_120093864_120093903_120099130_120099213_120104341
transcript_36800.nnic	chr16	-	1235	9	NIC	ENSMUSG00000022948.17	novel	1826	12	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_5	42.4365334941486	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGTCTTAGTCG	NA	False	NA	-1	True	AATAAA	-21	NA	93400703	93380344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93393185_93393224_93396099_93396196_93398525_93398687_93400453
transcript_36808.known	chr16	-	934	7	FSM	ENSMUSG00000022948.17	ENSMUST00000233324.2	934	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	57.2996509587973	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGCAGACTGTCTTAG	NA	False	NA	-4	True	AATAAA	-18	NA	93387977	93380347	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387143_93387175_93387761
transcript_3681.known	chr1	+	488	6	FSM	ENSMUSG00000026388.16	ENSMUST00000112644.9	488	6	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	7.2773621594641	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTTTGATTTATCTCTA	NA	False	NA	15	True	AATAAA	-16	NA	120048924	120115919	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_120048948_120078332_120078478_120088335_120088387_120093864_120093903_120099130_120099213_120115770
transcript_36819.known	chr16	-	467	4	FSM	ENSMUSG00000022948.17	ENSMUST00000233517.2	467	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	64.6374504447692	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGATTCTCCAGGCTTCTG	NA	False	NA	NA	False	NA	NA	NA	93383497	93380495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_93380573_93382066_93382191_93383124_93383206_93383312
transcript_3682.known	chr1	+	401	5	FSM	ENSMUSG00000026388.16	ENSMUST00000056038.15	401	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	17.3835410661925	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTTTGATTTATCTCTA	NA	False	NA	15	True	AATAAA	-16	NA	120048929	120115919	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_120048948_120078332_120078478_120088335_120088387_120093864_120093903_120115770
transcript_36820.nnic	chr16	-	509	4	NNC	ENSMUSG00000022948.17	novel	2408	12	NA	NA	-40	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	65.576079649688	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGTCTTAGTCG	NA	False	NA	-1	True	AATAAA	-21	NA	93383559	93380344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_93380573_93382066_93382191_93383124_93383206_93383483
transcript_36823.nic	chr16	-	655	3	ISM	ENSMUSG00000022948.17	ENSMUST00000154355.3	1064	6	0	8190	0	-7986	5prime_fragment	FALSE	canonical	3	56	junction_2	14.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGATGTAAAGGAGGAGAA	NA	False	NA	NA	False	AAGAAA	-17	NA	93400703	93395951	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_-_93396196_93398525_93398687_93400453
transcript_36826.known	chr16	-	744	3	FSM	ENSMUSG00000022948.17	ENSMUST00000233981.2	744	3	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_1	7.5	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGCAGACTGTCTTAG	NA	False	NA	-4	True	AATAAA	-18	NA	93383519	93380347	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_93380573_93382066_93382191_93383124
transcript_36829.known	chr16	+	593	3	FSM	ENSMUSG00000051483.10	ENSMUST00000231762.2	593	3	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	210.5	472	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTTGTGGAAGATACAAAG	NA	False	NA	NA	False	GGGGCT	-9	NA	93404776	93406805	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_93405143_93405676_93405785_93406686
transcript_3683.nnic	chr1	+	517	5	NIC	ENSMUSG00000026388.16	novel	488	6	NA	NA	-72	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	20.4572725454788	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTTTGATTTATCTCTA	NA	False	NA	15	True	AATAAA	-16	NA	120048844	120115919	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_120048948_120078332_120078478_120093864_120093903_120099130_120099213_120115770
transcript_36832.known	chr16	+	939	3	FSM	ENSMUSG00000082815.3	ENSMUST00000120115.3	939	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAGGTTTACAAATGTTT	706	False	NA	NA	False	AATAAA	-20	NA	93424984	93427339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_93425274_93425787_93425896_93426797
transcript_36833.known	chr16	+	1170	3	FSM	ENSMUSG00000022947.9	ENSMUST00000039620.7	1170	3	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_2	11	531	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTATTTGGTTTTTGTTTGT	NA	False	NA	20	True	ATTAAA	-22	NA	93480102	93487878	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_93480502_93481934_93482043_93487215
transcript_36837.known	chr16	+	4178	17	FSM	ENSMUSG00000039456.11	ENSMUST00000044068.10	4178	17	0	0	0	0	multi-exon	TRUE	non_canonical	1	193	junction_4	108.324454764379	424	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGGTAACTGAAAGTTA	974	False	NA	15	True	AATAAA	-26	NA	93629008	93672960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_93629237_93638258_93638332_93641081_93641215_93642027_93642242_93644169_93644319_93646017_93646166_93649976_93650106_93650666_93650787_93652303_93652402_93657380_93657486_93659301_93659425_93659528_93659604_93661847_93661906_93663262_93663427_93667251_93668141_93670124_93670283_93671646
transcript_36844.nnic	chr16	+	1723	11	NNC	ENSMUSG00000022946.11	novel	1573	10	NA	NA	-674	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	20.2309169342371	108	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTAATTGTCATGTGTATAG	3875	False	NA	20	True	AATAAA	-23	NA	93595047	93607476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_93595268_93595793_93595874_93596794_93596905_93596988_93597136_93598448_93598511_93600349_93600479_93603222_93603360_93604100_93604154_93604705_93604868_93606179_93606310_93606983
transcript_36846.nnic	chr16	+	1242	6	NNC	ENSMUSG00000022946.11	novel	7319	37	NA	NA	-3519	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	24.2107414178088	67	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTAATTGTCATGTGTATAG	NA	False	NA	20	True	AATAAA	-23	NA	93602802	93607476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_93603070_93603222_93603360_93604100_93604154_93604705_93604868_93606179_93606310_93606983
transcript_36851.known	chr16	+	1189	4	FSM	ENSMUSG00000022946.11	ENSMUST00000226335.2	1189	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	5.24933858267454	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAAAGAAAGCA	NA	False	NA	NA	False	NA	NA	NA	93508818	93537562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_93508957_93513037_93513201_93536041_93536224_93536856
transcript_36859.nnic	chr16	+	779	3	NNC	ENSMUSG00000022946.11	novel	7319	37	NA	NA	-422	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	35.5	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTAATTGTCATGTGTATAG	2060	False	NA	20	True	AATAAA	-23	NA	93605899	93607476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_93606056_93606179_93606310_93606983
transcript_3686.known	chr1	-	2752	5	FSM	ENSMUSG00000026389.17	ENSMUST00000112640.8	2752	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_4	6.57647321898295	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTACAATAGTTAAAATTGT	NA	False	NA	-21	True	NA	NA	NA	120193014	120154152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_120155659_120161971_120162137_120169161_120169690_120171497_120171998_120192961
transcript_36863.nnic	chr16	-	2039	3	NNC	ENSMUSG00000097768.3	novel	1580	2	NA	NA	-379	-27	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_1	9	89	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGTAGTTTTGCTAATT	6192	False	NA	NA	False	AATAAA	-1	NA	93592168	93589050	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_93590271_93590397_93590505_93591456
transcript_36864.nnic	chr16	-	1921	3	NNC	ENSMUSG00000097768.3	novel	1580	2	NA	NA	-379	-145	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_1	9	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGCGTGCTGTTGTGCA	6192	False	NA	NA	False	TATAAA	-3	NA	93592168	93589168	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_93590271_93590397_93590505_93591456
transcript_36866.known	chr16	-	1580	2	FSM	ENSMUSG00000097768.3	ENSMUST00000180967.3	1580	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATACACCTTTAAATAATA	6571	False	NA	NA	False	AATAAA	-28	NA	93591789	93589023	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_93590271_93591456
transcript_36867.known	chr16	+	1922	14	FSM	ENSMUSG00000022945.13	ENSMUST00000023666.11	1922	14	0	0	0	0	multi-exon	FALSE	canonical	3	827	junction_1	52.2487224157954	1045	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGCTGACTTCGCT	4366	False	NA	21	True	AATAAA	-29	NA	93680788	93703003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_93680864_93681353_93681510_93682246_93682380_93684009_93684128_93684929_93685034_93688387_93688485_93689001_93689087_93689619_93689714_93691624_93691695_93691782_93691875_93696910_93697074_93697812_93698245_93701893_93701986_93702792
transcript_36869.known	chr16	+	1894	14	FSM	ENSMUSG00000022945.13	ENSMUST00000117099.8	1894	14	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	247.655157271309	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCCAAATAAACACTCATGAA	4389	False	NA	-17	True	NA	NA	NA	93680811	93702965	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_93680864_93681320_93681510_93682246_93682380_93684009_93684128_93684929_93685034_93688387_93688485_93689001_93689087_93689619_93689714_93691624_93691695_93691782_93691875_93696910_93697074_93697812_93698245_93701893_93701986_93702792
transcript_36874.known	chr16	-	1457	3	FSM	ENSMUSG00000047109.14	ENSMUST00000050962.5	1457	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCATCCATCGGGTTGGT	6700	False	NA	NA	False	AATAAA	-18	NA	93809696	93715919	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_93716926_93739155_93739294_93809383
transcript_36880.nnic	chr16	+	1288	4	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-645	1916	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	116.802777744748	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCCGCGTGATTCA	2219	False	NA	17	True	NA	NA	NA	93811654	93815011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_93811971_93812291_93812370_93812713_93813006_93814409
transcript_36881.nnic	chr16	+	1181	4	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-701	1916	at_least_one_novel_splicesite	FALSE	canonical	3	174	junction_3	36.1693547388148	906	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCCGCGTGATTCA	2163	False	NA	17	True	NA	NA	NA	93811598	93815011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_93811971_93812291_93812370_93812713_93813006_93814572
transcript_3689.nnic	chr1	-	1467	7	NNC	ENSMUSG00000003721.15	novel	2697	6	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	68.4438131284016	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTAGTCCTTTTTATTC	NA	False	NA	-1	True	ATTAAA	-17	NA	121255771	121232081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_121232336_121233583_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121247325_121247702_121255419
transcript_36899.nnic	chr16	+	962	3	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-611	1916	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	116	95	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCCGCGTGATTCA	2253	False	NA	17	True	NA	NA	NA	93811688	93815011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_93811971_93812291_93812370_93814409
transcript_369.known	SIRV5	+	1984	18	FSM	SIRV5A	SIRV502	1984	18	0	0	0	0	multi-exon	FALSE	canonical	3	681	junction_4	3430.92271124242	2693	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTTTACCGCCAAAAAATG	NA	False	NA	NA	False	NA	NA	NA	1019	10989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2489_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858
transcript_36900.nnic	chr16	+	808	3	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-620	1916	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_2	104	29	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCCGCGTGATTCA	2244	False	NA	17	True	NA	NA	NA	93811679	93815011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_93811971_93812291_93812370_93814572
transcript_36903.nnic	chr16	+	1072	3	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-670	1916	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_1	67.5	79	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCCGCGTGATTCA	2194	False	NA	17	True	NA	NA	NA	93811629	93815011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_93811971_93812713_93813006_93814572
transcript_36919.nnic	chr16	+	1174	4	Fusion	ENSMUSG00000116947.2_ENSMUSG00000116939.2	novel	452	2	NA	NA	-593	54	multi-exon	FALSE	canonical	3	16	junction_3	99.9911107160143	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTGAGTCCATGAATGT	2271	False	NA	NA	False	NA	NA	NA	93811706	93817237	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr16_+_93811971_93812291_93812370_93814572_93814651_93816483
transcript_36923.nnic	chr16	+	1243	3	Genic_Genomic	ENSMUSG00000116939.2	novel	383	1	NA	NA	-5078	54	multi-exon	FALSE	canonical	0	0	junction_1	8	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTGAGTCCATGAATGT	2287	False	NA	NA	False	NA	NA	NA	93811722	93817237	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr16_+_93811971_93814409_93814651_93816483
transcript_36925.known	chr16	-	1355	1	FSM	ENSMUSG00000040820.17	ENSMUST00000226249.2	1355	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATCTCAGACATTTTGT	NA	False	NA	NA	False	AATAAA	-15	NA	94114430	94113075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_94113100_94114400
transcript_36926.known	chr16	+	1531	4	FSM	ENSMUSG00000022941.9	ENSMUST00000023660.9	1531	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	1.63299316185545	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGACAATCATCTTTTT	NA	False	NA	7	True	AATAAA	-15	NA	94129278	94137794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_94129457_94130204_94130281_94134114_94134183_94136585
transcript_36930.known	chr16	+	1607	17	FSM	ENSMUSG00000040785.20	ENSMUST00000153988.9	1607	17	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	14.9101475512484	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAGTTAGCACAAGAAA	NA	False	NA	NA	False	NA	NA	NA	94171607	94228712	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_94171721_94204172_94204228_94209412_94209576_94210542_94210589_94211691_94211816_94212918_94212983_94216807_94216869_94217140_94217226_94219465_94219601_94220256_94220338_94221106_94221220_94223085_94223207_94224923_94225047_94225945_94226048_94227009_94227103_94227624_94227690_94228649
transcript_36931.known	chr16	+	2180	20	FSM	ENSMUSG00000040785.20	ENSMUST00000150346.8	2180	20	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	18.09914217217	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAGAAGCCAAAAGA	NA	False	NA	NA	False	AAAACA	-6	NA	94171601	94235204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_94171721_94204172_94204228_94210542_94210589_94211691_94211816_94212918_94212983_94216807_94216869_94217140_94217226_94219465_94219601_94220256_94220338_94221106_94221220_94223085_94223207_94224923_94225047_94225945_94226048_94227009_94227103_94227624_94227690_94228649_94228787_94230217_94230545_94232646_94232899_94233974_94234022_94235174
transcript_36934.known	chr16	+	7415	46	FSM	ENSMUSG00000040785.20	ENSMUST00000117648.9	7415	46	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_37	31.7357141963995	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCGTTCACTGTCGTCCT	NA	False	NA	NA	False	AATAAA	-17	NA	94171476	94270079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_94171721_94184770_94184926_94185204_94185248_94185642_94185794_94186194_94186283_94188195_94188250_94189123_94189245_94191060_94191147_94192873_94192969_94193970_94194034_94204172_94204228_94209412_94209576_94210542_94210589_94211691_94211816_94212918_94212983_94216807_94216869_94217140_94217226_94219465_94219601_94220256_94220338_94221106_94221220_94223085_94223207_94224923_94225047_94225945_94226048_94227009_94227103_94227624_94227690_94228649_94228787_94230217_94230545_94232646_94232899_94233974_94234022_94235174_94235232_94236334_94236406_94240043_94240209_94243329_94244351_94245343_94245410_94248857_94249008_94251878_94252019_94253822_94253892_94255285_94255383_94257569_94257671_94258179_94258271_94258789_94258892_94260620_94260962_94263080_94263208_94263354_94263490_94267761_94267855_94268784
transcript_36937.known	chr16	+	3781	11	FSM	ENSMUSG00000040785.20	ENSMUST00000119131.3	3781	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_10	14.2197046382828	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTCACTTTTGTAGAACT	NA	False	NA	NA	False	AGTAAA	-12	NA	94171656	94198054	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_94171721_94184770_94184926_94185204_94185248_94185642_94185794_94186194_94186283_94188195_94188250_94189123_94189245_94191060_94191147_94192873_94192969_94193970_94194034_94195193
transcript_36941.known	chr16	+	2973	10	FSM	ENSMUSG00000040785.20	ENSMUST00000145432.8	2973	10	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	18.1720175605853	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATGATGTATGAATTTCA	NA	False	NA	NA	False	NA	NA	NA	94171608	94197241	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_94171721_94184770_94184926_94185642_94185794_94186194_94186283_94188195_94188250_94189123_94189245_94191060_94191147_94192873_94192969_94193970_94194034_94195193
transcript_36948.known	chr16	-	912	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113914.8	912	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	179.103845575688	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGAGTAGATCTATATGT	NA	False	NA	NA	False	AATAAA	-28	NA	94171874	94165305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171599
transcript_3695.known	chr1	-	2697	6	FSM	ENSMUSG00000003721.15	ENSMUST00000003818.14	2697	6	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_4	17.805617091244	496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTAGTCCTTTTTATTC	NA	False	NA	-1	True	ATTAAA	-17	NA	121255753	121232081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121247325_121247702_121255419
transcript_36950.known	chr16	-	758	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113905.8	758	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	183.830084589003	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGAGTAGATCTATATGT	NA	False	NA	NA	False	AATAAA	-28	NA	94171874	94165305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171753
transcript_36953.known	chr16	-	548	5	FSM	ENSMUSG00000022940.18	ENSMUST00000232294.2	548	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	187.268523783363	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTCATTTACAGTTGTGG	NA	False	NA	-8	True	TATAAA	-11	NA	94172701	94165493	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94172602
transcript_36960.known	chr16	-	745	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113906.9	745	5	0	0	0	0	multi-exon	TRUE	canonical	3	162	junction_4	117.933243828871	1185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGAGTAGATCTATATGT	NA	False	NA	NA	False	AATAAA	-28	NA	94171571	94165305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171463
transcript_36961.known	chr16	-	966	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113910.8	966	5	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_4	95.9283586850104	1125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGAGTAGATCTATATGT	NA	False	NA	NA	False	AATAAA	-28	NA	94171553	94165305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171224
transcript_36962.known	chr16	+	5759	12	FSM	ENSMUSG00000022897.16	ENSMUST00000119878.8	5759	12	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_3	29.752977488337	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGTTTTTAAAATGGATT	72	False	NA	20	True	AGTAAA	-22	NA	94370868	94495926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_94371394_94412277_94412364_94460355_94460553_94464600_94464721_94466774_94466964_94469663_94469812_94472161_94472449_94474195_94474343_94478310_94478452_94485893_94486201_94487337_94487463_94492439
transcript_36968.nnic	chr16	+	1129	6	Intergenic	novelGene_58	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	10.1311401135312	16	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTGTGGTTTCCTGGCCTG	NA	False	NA	8	True	AATAAA	-18	NA	94656097	94670834	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr16_+_94656205_94659190_94659253_94667462_94667539_94668150_94668385_94669776_94670200_94670607
transcript_36972.nnic	chr16	+	764	5	Intergenic	novelGene_56	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	9.5655632348545	12	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTGTGGTTTCCTGGCCTG	NA	False	NA	8	True	AATAAA	-18	NA	94656086	94670834	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr16_+_94656240_94659190_94659253_94667462_94667539_94669953_94670200_94670607
transcript_36974.nnic	chr16	+	640	5	Intergenic	novelGene_57	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_3	9.20258115965298	11	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTGTGGTTTCCTGGCCTG	NA	False	NA	8	True	AATAAA	-18	NA	94656086	94670834	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr16_+_94656240_94659190_94659253_94667462_94667539_94670077_94670200_94670607
transcript_36977.nnic	chr16	+	895	5	Intergenic	novelGene_59	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	11.3247516529061	148	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTGTGGTTTCCTGGCCTG	NA	False	NA	8	True	AATAAA	-18	NA	94656097	94670834	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr16_+_94656205_94659190_94659253_94667462_94667539_94669776_94670200_94670607
transcript_36985.nnic	chr16	+	429	4	Antisense	novelGene_ENSMUSG00000043301.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	11	junction_3	6.94422221866655	50	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGGCTGCATCACACAGT	NA	False	NA	NA	False	AATAAA	-15	NA	94656086	94668288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr16_+_94656240_94659190_94659253_94667462_94667539_94668150
transcript_36996.nnic	chr16	+	946	3	Antisense	novelGene_ENSMUSG00000043301.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	1	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTACTCCCTACCTC	8764	False	NA	NA	False	NA	NA	NA	94560981	94586502	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr16_+_94561137_94563704_94563802_94585808
transcript_36998.nnic	chr16	+	337	3	Antisense	novelGene_ENSMUSG00000043301.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	5.5	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGGCTGCATCACACAGT	NA	False	NA	NA	False	AATAAA	-15	NA	94656116	94668288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr16_+_94656240_94667462_94667539_94668150
transcript_37.known	ERCC-00076	+	626	1	FSM	ERCC-00076A	DQ883650	626	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1571	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00076_+_0_600
transcript_37001.nnic	chr16	+	885	2	Antisense	novelGene_ENSMUSG00000043301.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGAGTTGGTGGTGGGTAG	8764	False	NA	NA	False	NA	NA	NA	94560981	94564434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr16_+_94561137_94563704
transcript_37009.nnic	chr16	+	989	5	NNC	ENSMUSG00000116641.2	novel	1200	5	NA	NA	22093	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_2	5.44862367942584	37	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTGAACCATTATTTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	94544845	94554297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_94545201_94549749_94549952_94553485_94553564_94553805_94553999_94554136
transcript_3701.nnic	chr1	-	1266	6	NIC	ENSMUSG00000003721.15	novel	2697	6	NA	NA	22	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_5	70.4346505634833	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCGCTACATGAAAGATATG	NA	False	NA	NA	False	AATAAA	-14	NA	121255731	121233423	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121247325_121247635_121255419
transcript_37015.nnic	chr16	+	690	4	NNC	ENSMUSG00000116641.2	novel	1200	5	NA	NA	30328	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	7.71722460186015	34	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTGAACCATTATTTGTT	863	False	NA	NA	False	AATAAA	-19	NA	94553080	94554297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_94553339_94553485_94553564_94553805_94553999_94554136
transcript_37018.nnic	chr16	+	535	3	NNC	ENSMUSG00000116641.2	novel	1200	5	NA	NA	30796	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	9.5	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTGAACCATTATTTGTT	1331	False	NA	NA	False	AATAAA	-19	NA	94553548	94554297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_+_94553730_94553805_94553999_94554136
transcript_37019.nnic	chr16	+	1171	3	Antisense	novelGene_ENSMUSG00000117232.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCCTCTTGGTCATG	2572	False	NA	NA	False	NA	NA	NA	95722491	95734771	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr16_+_95722646_95732406_95732589_95733936
transcript_37021.nnic	chr16	-	476	3	NNC	ENSMUSG00000117232.2	novel	629	5	NA	NA	79441	-7590	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCTTTGTCTTGGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	95567529	95565330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_95565561_95567173_95567219_95567328
transcript_37022.nnic	chr16	-	510	3	NNC	ENSMUSG00000117232.2	novel	629	5	NA	NA	78489	-7590	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.5	19	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCTTTGTCTTGGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	95568481	95565330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_95565561_95567173_95567219_95568246
transcript_37024.nnic	chr16	-	410	3	NNC	ENSMUSG00000117232.2	novel	629	5	NA	NA	76134	-7590	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCTTTGTCTTGGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	95570836	95565330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_95565561_95567173_95567219_95570701
transcript_37026.known	chr16	+	704	2	FSM	ENSMUSG00000085903.2	ENSMUST00000144984.2	704	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAAATGGCTTGTGATTG	1040	False	NA	NA	False	NA	NA	NA	95701597	95702928	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_95701820_95702446
transcript_37034.known	chr16	-	763	6	FSM	ENSMUSG00000022913.17	ENSMUST00000233590.2	763	6	0	0	0	0	multi-exon	FALSE	canonical	1	21	junction_5	474.772787762736	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCAGGTGGCCAGGACCTG	NA	False	NA	-114	True	NA	NA	NA	95792090	95781236	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_95781312_95783301_95783439_95784992_95785192_95788492_95788556_95789159_95789312_95791953
transcript_37035.known	chr16	-	1044	7	FSM	ENSMUSG00000022913.17	ENSMUST00000023630.16	1044	7	0	0	0	0	multi-exon	FALSE	canonical	3	1101	junction_3	73.0062782688357	8680	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTAACTTTATTTTCTTAA	NA	False	NA	-10	True	AATAAA	-16	NA	95792160	95781132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_95781312_95783301_95783439_95784992_95785192_95788492_95788556_95789159_95789312_95790691_95790799_95791953
transcript_37036.known	chr16	-	2382	5	FSM	ENSMUSG00000022914.18	ENSMUST00000113827.4	2382	5	0	0	0	0	multi-exon	TRUE	canonical	3	425	junction_4	11.1214882097676	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTAAGTATTCTATAAAATC	NA	False	NA	45	True	AATAAA	-17	NA	95883726	95867867	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_95869828_95883013_95883074_95883177_95883208_95883321_95883381_95883453
transcript_3704.known	chr1	-	674	5	FSM	ENSMUSG00000003721.15	ENSMUST00000186915.2	674	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	81.0524521529115	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCGCTACATGAAAGATATG	NA	False	NA	NA	False	AATAAA	-14	NA	121255448	121233423	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121255419
transcript_37046.known	chr16	-	2174	6	FSM	ENSMUSG00000040681.17	ENSMUST00000050884.16	2174	6	0	0	0	0	multi-exon	FALSE	canonical	3	5886	junction_4	404.27841891449	27410	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTGAAGCCATTTATTT	NA	False	NA	NA	False	NA	NA	NA	95928929	95921817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_95923618_95925922_95926046_95928352_95928404_95928510_95928541_95928631_95928662_95928789
transcript_37048.known	chr16	+	2495	5	FSM	ENSMUSG00000023147.18	ENSMUST00000023913.11	2495	5	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_2	29.2350389088163	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGAAAGCGTGCTTC	NA	False	NA	30	True	AATAAA	-24	NA	95946606	95959052	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_95946779_95953012_95953179_95954170_95954239_95955280_95955396_95957078
transcript_37052.known	chr16	+	1101	4	FSM	ENSMUSG00000023147.18	ENSMUST00000233227.2	1101	4	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_2	29.6348143611905	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGGCA	NA	False	NA	NA	False	NA	NA	NA	95946606	95955975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_95946779_95953012_95953179_95954170_95954239_95955280
transcript_37053.known	chr16	+	2415	4	FSM	ENSMUSG00000023147.18	ENSMUST00000233566.2	2415	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	163.242832069963	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGGTACTGTGGAAAGCG	NA	False	NA	24	True	AATAAA	-18	NA	95946612	95959046	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_95946779_95953012_95953179_95955280_95955396_95957078
transcript_37057.nic	chr16	+	700	3	ISM	ENSMUSG00000023147.18	ENSMUST00000233227.2	1101	4	-7	1450	-7	-858	5prime_fragment	FALSE	canonical	3	306	junction_2	22	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATTGCCTTTCTTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	95946599	95954525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr16_+_95946779_95953012_95953179_95954170
transcript_37061.known	chr16	+	1554	8	FSM	ENSMUSG00000000159.17	ENSMUST00000081093.10	1554	8	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	1.04978131833565	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTTGTATTATCTTTTTC	6315	False	NA	NA	False	AATAAA	-17	NA	96162993	96205231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_96163045_96165206_96165285_96174029_96174348_96187685_96187827_96192219_96192245_96197568_96197670_96199090_96199165_96204465
transcript_37064.nnic	chr16	+	690	2	Intergenic	novelGene_60	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTGTTCTCCCGTGATAG	NA	False	NA	NA	False	AATAAA	-13	NA	96559762	96560833	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr16_+_96560009_96560389
transcript_37065.known	chr16	-	465	1	FSM	ENSMUSG00000116929.2	ENSMUST00000231393.2	465	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAATGCTGCTATGGATA	NA	False	NA	NA	False	NA	NA	NA	97268148	97267683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_97267700_97268100
transcript_37078.known	chr16	-	806	8	FSM	ENSMUSG00000022938.9	ENSMUST00000231414.2	806	8	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_7	10.770329614269	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGAATGTCACAGGAGTCT	NA	False	NA	-10	True	AATAAA	-24	NA	97313730	97272289	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_97272424_97276447_97276581_97276934_97277023_97277579_97277631_97279548_97279608_97282986_97283111_97302059_97302204_97313657
transcript_37083.nnic	chr16	-	850	8	NNC	ENSMUSG00000022938.9	novel	806	8	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_7	13.0384048104053	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGAATGTCACAGGAGTCT	NA	False	NA	-10	True	AATAAA	-24	NA	97313746	97272289	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr16_-_97272424_97276447_97276581_97276934_97277023_97277579_97277631_97279548_97279608_97282986_97283111_97302059_97302204_97313629
transcript_37091.nnic	chr16	-	725	7	NIC	ENSMUSG00000022938.9	novel	806	8	NA	NA	-63	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_6	15.0268278607148	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGAATGTCACAGGAGTCT	NA	False	NA	-10	True	AATAAA	-24	NA	97313793	97272289	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_-_97272424_97276447_97276581_97276934_97277023_97277579_97277631_97279548_97279608_97282986_97283111_97313657
transcript_3710.known	chr1	-	1204	6	FSM	ENSMUSG00000003721.15	ENSMUST00000160968.8	1204	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	77.0817747590181	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGCTAAAAACAAAGCAAAT	NA	False	NA	NA	False	NA	NA	NA	121255475	121233266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121247325_121247702_121255449
transcript_37102.known	chr16	-	3591	8	FSM	ENSMUSG00000005251.16	ENSMUST00000019386.10	3591	8	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	9.512612465478	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGCAGACTATTATTTCTT	NA	False	NA	2	True	AATAAA	-22	NA	97564987	97543132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_97545445_97547059_97547325_97548492_97548597_97549222_97549382_97551292_97551343_97552693_97552843_97556267_97556560_97564727
transcript_37104.known	chr16	-	6556	14	FSM	ENSMUSG00000045975.9	ENSMUST00000170757.3	6556	14	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_10	14.8455559863677	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTTCCGAGTGCCGTGC	NA	False	NA	2	True	AATAAA	-27	NA	97723833	97656408	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_97660777_97669791_97670117_97671352_97671481_97676328_97676443_97677419_97677595_97678307_97678433_97680809_97680875_97682788_97682895_97684472_97684597_97687287_97687411_97691213_97691319_97693389_97693510_97713805_97713905_97723254
transcript_37105.known	chr16	-	902	2	FSM	ENSMUSG00000045975.9	ENSMUST00000232343.2	902	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAAGTGTGTTCTATGCA	NA	False	NA	-4	True	ATTAAA	-13	NA	97661610	97659949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_97660777_97661535
transcript_37106.known	chr16	-	676	5	FSM	ENSMUSG00000045975.9	ENSMUST00000231332.2	676	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	14.0423466699836	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGTCCTGAGTTTCTGA	NA	False	NA	NA	False	ATTAAA	-12	NA	97693481	97682662	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_97682895_97684472_97684597_97687287_97687411_97691213_97691319_97693389
transcript_37108.known	chr16	-	3072	4	FSM	ENSMUSG00000046962.17	ENSMUST00000052089.9	3072	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	18.4451137763426	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTTTGGGATGAATTAAT	NA	False	NA	-1	True	AATAAA	-27	NA	97763809	97750960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_97752070_97752669_97754294_97757957_97758101_97763613
transcript_3711.known	chr1	+	2338	24	FSM	ENSMUSG00000026339.19	ENSMUST00000112621.2	2338	24	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_9	17.1308761805856	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAAGTATTGAGCAACTGC	NA	False	NA	NA	False	AATAAA	-14	NA	121358838	121429317	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_121358987_121362261_121362376_121365524_121365620_121369510_121369623_121373368_121373468_121375952_121376010_121383799_121383901_121389192_121389230_121389615_121389709_121389964_121390013_121390827_121390915_121403760_121403878_121405563_121405627_121408543_121408618_121409724_121409807_121410329_121410396_121411015_121411070_121414331_121414395_121418850_121418960_121420633_121420717_121422124_121422163_121424712_121424798_121426936_121427051_121428918
transcript_37114.known	chr16	-	889	3	FSM	ENSMUSG00000046962.17	ENSMUST00000231263.2	889	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	40	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATCAGTAAGCCACATGT	NA	False	NA	NA	False	NA	NA	NA	97763801	97753729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_97754294_97757957_97758095_97763613
transcript_37115.known	chr16	-	5463	2	FSM	ENSMUSG00000046962.17	ENSMUST00000063605.15	5463	2	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATGCAGTTGTGGTTTTT	NA	False	NA	0	True	AATAAA	-21	NA	97763815	97749032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_97754294_97763613
transcript_37116.known	chr16	+	669	6	FSM	ENSMUSG00000080717.11	ENSMUST00000232308.2	669	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	50.8409283943557	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCTCCTCTGATGGTGAA	NA	False	NA	NA	False	NA	NA	NA	97798533	97817315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_97798637_97809828_97809956_97810143_97810205_97811318_97811369_97816865_97816920_97817041
transcript_37117.nic	chr16	+	794	6	NIC	ENSMUSG00000080717.11	novel	669	6	NA	NA	-186	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_4	53.1014124105941	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGACTGTCTTAGCTACAT	NA	False	NA	NA	False	NA	NA	NA	97798328	97832636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_+_97798637_97809828_97809956_97810143_97810205_97811318_97811369_97816865_97816920_97832442
transcript_37124.known	chr16	+	1230	5	FSM	ENSMUSG00000080717.11	ENSMUST00000231913.2	1230	5	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	45.9292934846597	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGGTATT	NA	False	NA	14	True	NA	NA	NA	97798563	97817956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_97798637_97809828_97809956_97810143_97810205_97816865_97816920_97817041
transcript_37125.known	chr16	+	546	5	FSM	ENSMUSG00000080717.11	ENSMUST00000232387.2	546	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	48.9508682251909	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGACTGTCTTAGCTACAT	NA	False	NA	NA	False	NA	NA	NA	97798526	97832636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_97798637_97809828_97809956_97810143_97810205_97816865_97816920_97832442
transcript_37126.known	chr16	+	672	5	FSM	ENSMUSG00000080717.11	ENSMUST00000231936.2	672	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	53.7976532945444	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGAGAAAAGAAAGGGTTT	NA	False	NA	NA	False	NA	NA	NA	97798514	97833001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_97798637_97809828_97809956_97810143_97810205_97816865_97816920_97832693
transcript_37127.nnic	chr16	+	527	4	NIC	ENSMUSG00000080717.11	novel	546	5	NA	NA	-21	2	combination_of_known_splicesites	FALSE	canonical	1	2	junction_3	57.6945982451275	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTCTTAGCTACATTT	NA	False	NA	NA	False	NA	NA	NA	97798493	97832638	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_+_97798637_97809828_97809956_97810143_97810205_97832442
transcript_37128.known	chr16	+	403	4	FSM	ENSMUSG00000080717.11	ENSMUST00000232278.2	403	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	54.6260011349907	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGCCTCCTGGCTGAAG	NA	False	NA	NA	False	NA	NA	NA	97798523	97817150	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_97798637_97809828_97809956_97816865_97816920_97817041
transcript_37129.nic	chr16	+	507	4	NIC	ENSMUSG00000080717.11	novel	546	5	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_2	56.5822901229312	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGACTGTCTTAGCTACAT	NA	False	NA	NA	False	NA	NA	NA	97798504	97832636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr16_+_97798637_97809828_97809956_97816865_97816920_97832442
transcript_37131.known	chr16	+	1298	3	FSM	ENSMUSG00000080717.11	ENSMUST00000122450.8	1298	3	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_2	8.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATACTTGAGTCCTGTTTA	NA	False	NA	NA	False	NA	NA	NA	97798522	97811200	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_+_97798637_97809828_97809956_97810143
transcript_37132.known	chr16	-	524	2	FSM	ENSMUSG00000097874.4	ENSMUST00000183627.2	524	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGTTAAATGGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	97798168	97795862	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_97796344_97798125
transcript_37133.known	chr16	-	720	2	FSM	ENSMUSG00000097874.4	ENSMUST00000181465.3	720	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACTCAGTCTACTTTCTT	NA	False	NA	NA	False	ATTAAA	-20	NA	97798619	97795795	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr16_-_97796344_97798447
transcript_37135.nnic	chr17	-	817	2	Genic_Genomic	ENSMUSG00000068141.6	novel	720	1	NA	NA	-36	148	multi-exon	FALSE	canonical	0	0	junction_1	0	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAAAAAAACAAAAACAGA	NA	False	NA	NA	False	AATAAA	-36	NA	3095044	3094140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr17_-_3094877_3094963
transcript_37136.nnic	chr17	-	1397	5	NNC	ENSMUSG00000116995.2	novel	1210	4	NA	NA	-80	15	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	1.11803398874989	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACCATCCGGCCCTATCA	NA	False	NA	NA	False	TTTAAA	-13	NA	3165150	3162049	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_3162848_3162936_3163029_3163562_3163623_3164462_3164621_3164861
transcript_37138.known	chr17	-	1210	4	FSM	ENSMUSG00000116995.2	ENSMUST00000232087.2	1210	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	2.62466929133727	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGGCAC	NA	False	NA	NA	False	NA	NA	NA	3165070	3162064	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_3162848_3163562_3163623_3164462_3164621_3164861
transcript_37142.known	chr17	+	4866	20	FSM	ENSMUSG00000046201.10	ENSMUST00000076734.8	4866	20	0	0	0	0	multi-exon	TRUE	canonical	3	106	junction_1	21.7366509485669	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGTTCTAGGAATTGTAT	9446	False	NA	11	True	AATAAA	-18	NA	3165253	3249134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_3165694_3195349_3195434_3198810_3198856_3209437_3209600_3213233_3213388_3214421_3214553_3218237_3218415_3219601_3219682_3221377_3221496_3227367_3227500_3227885_3227999_3228429_3228624_3235338_3235440_3236035_3236150_3237863_3238021_3240421_3240556_3242091_3242237_3243288_3243358_3246052_3246269_3247034
transcript_37152.known	chr17	-	1402	7	FSM	ENSMUSG00000036983.8	ENSMUST00000041003.8	1402	7	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_2	6.8414585839246	682	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAAAACCTAACAGCTCAAA	NA	False	NA	NA	False	AATAAA	-16	NA	3608056	3569530	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_3570071_3571919_3572048_3586352_3586473_3593371_3593524_3595857_3595967_3605206_3605359_3607855
transcript_37161.nnic	chr17	+	653	2	NNC	ENSMUSG00000116852.2	novel	350	2	NA	NA	-296	1	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	0	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACTCTTTCTGTTGTCTGG	NA	False	NA	NA	False	AATAAA	-17	NA	3607802	3610138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_3608135_3609817
transcript_37162.known	chr17	+	350	2	FSM	ENSMUSG00000116852.2	ENSMUST00000232089.2	350	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCAACACACATGGCTTT	NA	False	NA	NA	False	NA	NA	NA	3608098	3610086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_3608180_3609817
transcript_3717.known	chr1	+	1036	7	FSM	ENSMUSG00000026339.19	ENSMUST00000155673.8	1036	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	32.6632651290236	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGTTGTCTCACCGTCTC	NA	False	NA	NA	False	GATAAA	-15	NA	121358823	121377480	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_121358987_121362261_121362376_121365524_121365620_121369510_121369623_121373368_121373468_121375952_121376010_121377084
transcript_37170.known	chr17	-	1445	1	FSM	ENSMUSG00000101959.2	ENSMUST00000189788.2	1445	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTACTGGTTTTTGCCTGTTG	NA	False	NA	NA	False	ATTAAA	-20	NA	5469042	5467597	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_5467600_5469000
transcript_37171.known	chr17	-	948	4	FSM	ENSMUSG00000004945.16	ENSMUST00000005053.14	948	4	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_1	16.0485374896143	7605	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCGGGGGCGTGTGTGTCTG	3468	False	NA	-8	True	NA	NA	NA	5490518	5461144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_5461743_5483716_5483855_5489806_5489908_5490407
transcript_37172.known	chr17	-	822	4	FSM	ENSMUSG00000004945.16	ENSMUST00000188282.7	822	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	325.783500025537	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGGGAGTGTTGGATGTG	3452	False	NA	NA	False	AATAAA	-13	NA	5490534	5482569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_5483026_5483716_5483855_5489806_5489908_5490407
transcript_37173.known	chr17	-	780	3	FSM	ENSMUSG00000004945.16	ENSMUST00000185896.2	780	3	0	0	0	0	multi-exon	FALSE	canonical	3	677	junction_2	16.5	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGACTGGTTTCTTTGTCT	3455	False	NA	NA	False	ACTAAA	-15	NA	5490531	5483299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_5483855_5489806_5489908_5490407
transcript_37174.known	chr17	-	441	1	FSM	ENSMUSG00000068120.5	ENSMUST00000181584.2	441	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	170	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCTGTCTCCACTTCCA	NA	False	NA	NA	False	GGGGCT	-44	NA	5866915	5866474	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_5866500_5866900
transcript_37176.known	chr17	+	3331	18	FSM	ENSMUSG00000002365.11	ENSMUST00000002436.11	3331	18	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_6	26.0644662593364	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAGCAGATTCCCAAAGTA	NA	False	NA	NA	False	AATAAA	-17	NA	5891603	5982229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_5891822_5937271_5937359_5940349_5940425_5942048_5942175_5949601_5949771_5952638_5952790_5955163_5955249_5958628_5958755_5958856_5958975_5968654_5968786_5970345_5970450_5970844_5970949_5972404_5972483_5974879_5974957_5976346_5976437_5977480_5977596_5978479_5978572_5980844
transcript_37180.nnic	chr17	-	426	3	Antisense	novelGene_ENSMUSG00000002365.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	3.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCCTCTTGATACTTTAT	NA	False	NA	NA	False	NA	NA	NA	5898684	5892294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr17_-_5892485_5897018_5897074_5898503
transcript_37185.nnic	chr17	+	911	3	NNC	ENSMUSG00000023805.18	novel	2513	17	NA	NA	-8533	-34710	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTCCCCCCCAGCTCCGG	9719	False	NA	NA	False	AATGAA	-45	NA	6017327	6026055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_6017763_6018509_6018769_6025838
transcript_37186.nnic	chr17	+	745	3	Intergenic	novelGene_61	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAGCCACACCTCCTCC	9719	False	NA	NA	False	NA	NA	NA	6017327	6019030	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr17_+_6017763_6018509_6018787_6018997
transcript_37187.nnic	chr17	+	830	3	NNC	ENSMUSG00000023805.18	novel	2513	17	NA	NA	-8533	-34809	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTTTCCTTTTTCGCGTGG	9719	False	NA	NA	False	NA	NA	NA	6017327	6025956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_6017763_6018509_6018787_6025838
transcript_37189.known	chr17	-	4007	17	FSM	ENSMUSG00000015659.13	ENSMUST00000097432.10	4007	17	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_6	12.4296457612436	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGACAGCAAGGATGAAGT	2593	False	NA	NA	False	ACTAAA	-45	NA	6130016	6092470	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_6094526_6095919_6096064_6099105_6099289_6100237_6100336_6100999_6101095_6101964_6102107_6106881_6107033_6110477_6110641_6111822_6111937_6115223_6115353_6116945_6117068_6117803_6117936_6119573_6119664_6121027_6121165_6122108_6122146_6124430_6124523_6129893
transcript_3719.known	chr1	+	762	5	FSM	ENSMUSG00000026339.19	ENSMUST00000128924.2	762	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_4	38.3861954353385	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTTTTGAGGATGTGAG	NA	False	NA	NA	False	AATAAA	-16	NA	121358836	121371751	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_121358987_121362261_121362376_121365524_121365620_121369510_121369623_121371460
transcript_37191.known	chr17	-	2033	16	FSM	ENSMUSG00000015659.13	ENSMUST00000024570.6	2033	16	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_12	20.0614611188274	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTCTCCATCTGTTGTTA	2607	False	NA	-19	True	AATATA	-15	NA	6130002	6094340	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_6094526_6095919_6096064_6099105_6099289_6100237_6100336_6100999_6101095_6101964_6102107_6106881_6107033_6110477_6110641_6111822_6111937_6115223_6115353_6116945_6117068_6117803_6117936_6121027_6121165_6122108_6122146_6124430_6124523_6129893
transcript_37199.nic	chr17	-	1678	8	ISM	ENSMUSG00000015659.13	ENSMUST00000097432.10	4007	17	-58	21995	-58	758	5prime_fragment	FALSE	canonical	3	78	junction_3	11.8545608204141	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGGTTTTGTTTTCTTTCT	2535	False	NA	NA	False	NA	NA	NA	6130074	6114465	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_-_6115353_6116945_6117068_6117803_6117936_6119573_6119664_6121027_6121165_6122108_6122146_6124430_6124523_6129893
transcript_37203.known	chr17	+	879	3	FSM	ENSMUSG00000034345.15	ENSMUST00000100955.3	879	3	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	535	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCTTTTACCCTGGGTAT	1834	False	NA	29	True	ATTAAA	-33	NA	6130204	6135407	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_6130350_6131076_6131150_6134746
transcript_37207.known	chr17	+	2245	3	FSM	ENSMUSG00000034345.15	ENSMUST00000039487.10	2245	3	0	0	0	0	multi-exon	FALSE	canonical	3	932	junction_1	74.5	2869	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGGTGGAGAGAGCAAGTG	1690	False	NA	NA	False	ATTAAA	-24	NA	6130060	6136792	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_6130187_6131076_6131150_6134746
transcript_37208.known	chr17	+	1613	2	FSM	ENSMUSG00000034345.15	ENSMUST00000146035.2	1613	2	0	0	0	0	multi-exon	FALSE	canonical	3	932	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAAAACTGACTATATACC	1741	False	NA	NA	False	AATAAA	-10	NA	6130111	6132614	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_6130187_6131076
transcript_3721.nic	chr1	+	650	2	ISM	ENSMUSG00000026339.19	ENSMUST00000128924.2	762	5	-69	9059	-10	-9059	5prime_fragment	FALSE	canonical	3	91	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGGAGAGAGGGAGGGAG	NA	False	NA	NA	False	NA	NA	NA	121358767	121362692	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_121358987_121362261
transcript_37214.known	chr17	+	4499	17	FSM	ENSMUSG00000038141.12	ENSMUST00000232383.2	4499	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	255.117367291508	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGACTTTTTGTTGCTG	NA	False	NA	38	True	AATAAA	-21	NA	6307134	6358589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_6307350_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6354919_6355643
transcript_37216.nnic	chr17	+	1881	17	NNC	ENSMUSG00000038141.12	novel	4499	17	NA	NA	-17	-7	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_14	271.433348172254	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTGTATGAGACTTTTT	NA	False	NA	31	True	AATAAA	-40	NA	6307117	6358582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_6307350_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6354919_6358271
transcript_37235.known	chr17	-	3321	5	FSM	ENSMUSG00000092074.3	ENSMUST00000169415.3	3321	5	0	0	0	0	multi-exon	TRUE	canonical	3	2579	junction_4	2048.76394138027	3786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6367775	6358268	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_6361219_6361567_6361646_6361983_6362108_6365191_6365234_6367648
transcript_37247.nic	chr17	-	884	2	ISM	ENSMUSG00000092074.3	ENSMUST00000169415.3	3321	5	28	6180	28	-6180	5prime_fragment	FALSE	canonical	3	2579	junction_1	0	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGAGGAAATGTCTTACA	NA	False	NA	NA	False	NA	NA	NA	6367747	6364448	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_-_6365234_6367648
transcript_37248.known	chr17	+	4405	17	FSM	ENSMUSG00000038141.12	ENSMUST00000088940.6	4405	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	216.5692369082	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGACTTTTTGTTGCTG	NA	False	NA	38	True	AATAAA	-21	NA	6320744	6358589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_6320866_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6354919_6355643
transcript_37249.known	chr17	-	640	6	FSM	ENSMUSG00000092074.3	ENSMUST00000232499.2	640	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	3093.1595885114	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTTGTATTTTATGTAGC	NA	False	NA	NA	False	AATAAA	-12	NA	6367693	6356621	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_6356874_6358912_6359012_6361567_6361646_6361983_6362108_6365191_6365234_6367648
transcript_37262.known	chr17	+	771	5	FSM	ENSMUSG00000096255.3	ENSMUST00000179569.3	771	5	0	0	0	0	multi-exon	TRUE	canonical	3	3024	junction_1	2440.4692555941	45126	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6697510	6703695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_6697638_6699278_6699321_6702406_6702531_6702868_6702947_6703295
transcript_37306.known	chr17	-	1859	9	FSM	ENSMUSG00000096780.8	ENSMUST00000190059.7	1859	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	312.308641411025	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAGACTTTCTGTTTTAA	NA	False	NA	NA	False	AATACA	-26	NA	6716494	6707876	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_6708878_6709602_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713273_6714743_6714802_6715923_6716016_6716181
transcript_37321.known	chr17	+	2589	5	FSM	ENSMUSG00000000579.15	ENSMUST00000092966.5	2589	5	0	0	0	0	multi-exon	TRUE	canonical	3	5304	junction_1	1714.27572169707	14783	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTGGTCATGGTGTC	NA	False	NA	NA	False	NA	NA	NA	6869069	6877078	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_6869236_6870885_6870928_6874010_6874135_6874472_6874551_6874899
transcript_3734.known	chr1	-	2258	13	FSM	ENSMUSG00000001674.12	ENSMUST00000001724.12	2258	13	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_12	122.318232492135	1511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTATACCTTTCCCT	NA	False	NA	-16	True	CATAAA	-23	NA	121495718	121481563	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_121481868_121482944_121483123_121483419_121483477_121485133_121485248_121486139_121486293_121486894_121487057_121487860_121488001_121489009_121489325_121489418_121489520_121489787_121489924_121492221_121492333_121493609_121493898_121495519
transcript_37347.known	chr17	-	771	5	FSM	ENSMUSG00000095677.3	ENSMUST00000179554.3	771	5	0	0	0	0	multi-exon	TRUE	canonical	3	5415	junction_4	1216.82506959711	30378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6923299	6916336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_6916737_6917085_6917164_6917501_6917626_6920709_6920752_6923172
transcript_37348.known	chr17	-	3545	4	FSM	ENSMUSG00000095677.3	ENSMUST00000232452.2	3545	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	2926.39994988154	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCATGTAGCTTTGATT	NA	False	NA	NA	False	AATAAA	-19	NA	6923217	6914000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_6914260_6914426_6917626_6920709_6920752_6923172
transcript_37376.known	chr17	+	1619	4	FSM	ENSMUSG00000041831.18	ENSMUST00000162013.4	1619	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	9.41629792788369	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATAACTGTAATTTTGCTA	NA	False	NA	NA	False	NA	NA	NA	6930412	6947904	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_6930610_6940859_6941395_6943610_6943830_6947236
transcript_37377.known	chr17	-	3164	13	FSM	ENSMUSG00000052397.9	ENSMUST00000064234.7	3164	13	0	0	0	0	multi-exon	FALSE	canonical	3	786	junction_7	74.9893973987138	2166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTGAGCGTTTATTGAGA	NA	False	NA	1	True	AATAAA	-20	NA	7050183	7005439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_7006867_7007028_7007281_7008361_7008455_7008819_7008981_7009752_7009884_7010088_7010253_7014662_7014760_7020381_7020529_7021384_7021469_7022009_7022285_7023246_7023343_7026877_7026962_7050030
transcript_37378.known	chr17	-	2243	8	FSM	ENSMUSG00000023806.11	ENSMUST00000231794.2	2243	8	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_1	24.1119836409624	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGTGTCTGACAAGGCTT	NA	False	NA	NA	False	ATTAAA	-18	NA	7216081	7171811	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_7172520_7172831_7172919_7175430_7175594_7177506_7177711_7178676_7178823_7181355_7181498_7209067_7209156_7215376
transcript_37379.known	chr17	-	1614	8	FSM	ENSMUSG00000023806.11	ENSMUST00000024572.10	1614	8	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	24.1119836409624	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATCGTTCAAGGGCCATG	NA	False	NA	NA	False	NA	NA	NA	7215755	7172114	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_7172520_7172831_7172919_7175430_7175594_7177506_7177711_7178676_7178823_7181355_7181498_7209067_7209156_7215376
transcript_37381.known	chr17	-	1263	3	FSM	ENSMUSG00000023806.11	ENSMUST00000232602.2	1263	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	43.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAACAAGCTCAGTCTGTC	NA	False	NA	NA	False	NA	NA	NA	7215680	7188267	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_7189139_7209067_7209156_7215376
transcript_37382.known	chr17	-	2312	4	FSM	ENSMUSG00000052031.9	ENSMUST00000063683.8	2312	4	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	227.371941980535	356	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCACACACTGTTCCATTCA	NA	False	NA	-19	True	AATAAA	-19	NA	7228555	7222409	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_7224424_7225052_7225168_7228135_7228190_7228426
transcript_37386.known	chr17	+	667	2	FSM	ENSMUSG00000116618.2	ENSMUST00000231833.2	667	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATAAAATGGAGAGGGA	NA	False	NA	NA	False	AAGAAA	-6	NA	7215844	7224595	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_7215935_7224018
transcript_37392.known	chr17	+	631	7	FSM	ENSMUSG00000094724.9	ENSMUST00000232245.2	631	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	345.775657841259	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTACAAAGACCCAACATTGA	NA	False	NA	NA	False	NA	NA	NA	7246406	7265477	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_7246498_7251537_7251591_7256120_7256192_7259079_7259194_7262027_7262074_7263832_7263908_7265296
transcript_37393.known	chr17	-	2649	10	FSM	ENSMUSG00000056133.6	ENSMUST00000070059.5	2649	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	5.35412613473634	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTACGTCTTGCCCAAATAT	NA	False	NA	NA	False	AATAAA	-21	NA	7652863	7630213	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_7631457_7637075_7637208_7637754_7637891_7639195_7639414_7641821_7641948_7643808_7644039_7644334_7644517_7646602_7646748_7646972_7647027_7652680
transcript_37396.known	chr17	+	2189	8	FSM	ENSMUSG00000073471.4	ENSMUST00000097423.3	2189	8	0	0	0	0	multi-exon	TRUE	canonical	3	57	junction_4	7.41482244134913	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGTGTCTGACAAGGCTT	NA	False	NA	NA	False	ATTAAA	-18	NA	8164484	8198656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_8165136_8171380_8171469_8188978_8189121_8191655_8191802_8192768_8192973_8194876_8195040_8197549_8197637_8197948
transcript_37397.known	chr17	+	621	3	FSM	ENSMUSG00000073471.4	ENSMUST00000231845.2	621	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	33	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGGACTGTGTGTTGTTT	NA	False	NA	NA	False	TTTAAA	-16	NA	8164826	8173648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_8165136_8171380_8171469_8173424
transcript_37406.known	chr17	-	1793	9	FSM	ENSMUSG00000095687.3	ENSMUST00000097420.7	1793	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	240.913852600883	1743	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTCTGGCTAGTGCGCAG	NA	False	NA	NA	False	AATGAA	-17	NA	8366929	8346907	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_8347719_8349056_8349132_8350874_8350921_8353735_8353850_8356719_8356791_8360427_8360486_8361349_8361403_8364373_8364435_8366425
transcript_3742.nic	chr1	-	462	2	ISM	ENSMUSG00000001674.12	ENSMUST00000001724.12	2258	13	-13	12084	-13	-1323	5prime_fragment	FALSE	canonical	3	390	junction_1	0	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAAAAGAGGAAAATGG	NA	False	NA	NA	False	AGTAAA	-10	NA	121495731	121493647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_121493898_121495519
transcript_37420.known	chr17	+	3505	13	FSM	ENSMUSG00000069135.12	ENSMUST00000097419.10	3505	13	0	0	0	0	multi-exon	TRUE	canonical	3	46	junction_7	116.477107908235	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTAGGTTTATCCTTGTGTT	NA	False	NA	NA	False	AGTAAA	-33	NA	8384332	8415636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_8384531_8384755_8384810_8387866_8387922_8388359_8388449_8388837_8388976_8391759_8391841_8394350_8394411_8401059_8401287_8403232_8403346_8405344_8405414_8410229_8410270_8411016_8411114_8413352
transcript_37426.known	chr17	+	3077	12	FSM	ENSMUSG00000069135.12	ENSMUST00000024636.15	3077	12	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_6	38.250587420542	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTACAGTGTTGGTTTT	NA	False	NA	30	True	ATTAAA	-22	NA	8384371	8415307	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_8384531_8384755_8384810_8387866_8387922_8388359_8388449_8388837_8388976_8391759_8391841_8401059_8401287_8403232_8403346_8405344_8405414_8410229_8410270_8411016_8411114_8413352
transcript_37432.known	chr17	+	1159	7	FSM	ENSMUSG00000069135.12	ENSMUST00000162586.2	1159	7	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_6	120.467146282019	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAACAAAAACAAAA	NA	False	NA	NA	False	AATAAA	-4	NA	8384351	8394913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_8384531_8384755_8384810_8387866_8387922_8388359_8388449_8388837_8388976_8391759_8391841_8394350
transcript_37435.nic	chr17	+	699	2	ISM	ENSMUSG00000069135.12	ENSMUST00000162586.2	1159	7	-46	9684	-27	-9684	5prime_fragment	FALSE	canonical	3	414	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAGTGAGACCTGAATGTT	NA	False	NA	NA	False	AAAAAG	-4	NA	8384305	8385229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_8384531_8384755
transcript_37441.known	chr17	+	920	5	FSM	ENSMUSG00000023861.18	ENSMUST00000046754.15	920	5	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	502.397937396244	5796	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTATTTGAGTGTGACTAT	2155	False	NA	0	True	AATAAA	-14	NA	8502627	8516489	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_8502794_8515358_8515363_8515366_8515464_8515655_8515789_8515969
transcript_37444.known	chr17	+	958	5	FSM	ENSMUSG00000023861.18	ENSMUST00000155364.8	958	5	0	0	0	0	multi-exon	FALSE	canonical	2	460	junction_2	254.978920697378	1413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGAGTGTGACTATATAT	2121	False	NA	4	True	AATAAA	-18	NA	8502593	8516493	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_8502794_8512246_8512251_8515366_8515464_8515655_8515789_8515969
transcript_37446.known	chr17	+	555	5	FSM	ENSMUSG00000023861.18	ENSMUST00000124023.8	555	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	407.512576493045	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGACCATGCCAACATTAT	2211	False	NA	NA	False	AAAACA	-15	NA	8502683	8516103	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_8502794_8512246_8512328_8515366_8515464_8515655_8515789_8515969
transcript_37460.known	chr17	+	1049	8	FSM	ENSMUSG00000073468.13	ENSMUST00000154553.2	1049	8	0	0	0	0	multi-exon	FALSE	canonical	3	730	junction_5	48.6457414710199	2419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTCTGGATCAACTGTA	2923	False	NA	NA	False	AATAAA	-19	NA	8529933	8546274	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_8530118_8537675_8537763_8538250_8538334_8539431_8539514_8540631_8540668_8542108_8542168_8543265_8543296_8545786
transcript_37464.known	chr17	+	2490	7	FSM	ENSMUSG00000073468.13	ENSMUST00000150728.8	2490	7	0	0	0	0	multi-exon	FALSE	canonical	3	775	junction_6	38.5947607267561	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTCTGGATCAACTGTA	2923	False	NA	NA	False	AATAAA	-19	NA	8529933	8546274	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_8530118_8537675_8537763_8538250_8538334_8539431_8539514_8540631_8542168_8543265_8543296_8545786
transcript_3747.known	chr1	-	2554	13	FSM	ENSMUSG00000026341.17	ENSMUST00000027579.17	2554	13	0	0	0	0	multi-exon	FALSE	canonical	3	364	junction_12	606.954190107366	1241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATGGTTTTTCTTCGTGC	NA	False	NA	-3	True	AATAAA	-21	NA	125363464	125320641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021_125363195_125363386
transcript_37470.known	chr17	+	810	6	FSM	ENSMUSG00000073468.13	ENSMUST00000145276.8	810	6	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_1	242.374586126516	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTTTCTGGATCAACTG	2990	False	NA	NA	False	AATAAA	-17	NA	8530000	8546272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_8530118_8539431_8539514_8540631_8540668_8542108_8542168_8543265_8543296_8545786
transcript_37476.nic	chr17	+	2255	8	NIC	ENSMUSG00000062327.11	novel	2046	8	NA	NA	-206	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_5	9.95295054191449	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGTGGATTATTCTCTA	NA	False	NA	10	True	AATAAA	-20	NA	8653048	8661328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_8653569_8654022_8654288_8654942_8655078_8655809_8655872_8655981_8656044_8657444_8657622_8658741_8658872_8660424
transcript_37477.known	chr17	+	2046	8	FSM	ENSMUSG00000062327.11	ENSMUST00000074667.9	2046	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	7.70634511957782	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGTGGATTATTCTCTA	NA	False	NA	10	True	AATAAA	-20	NA	8653254	8661328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_8653569_8654022_8654288_8654942_8655078_8655809_8655872_8655981_8656044_8657447_8657622_8658741_8658872_8660424
transcript_37478.known	chr17	+	1853	10	FSM	ENSMUSG00000023873.14	ENSMUST00000151609.2	1853	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	3.01027048536535	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTTGCGTGCTCACTGC	NA	False	NA	NA	False	AATAAA	-18	NA	9207188	9227150	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_9207254_9210877_9211585_9212427_9212551_9214029_9214090_9215810_9215936_9219959_9220019_9220601_9220778_9224023_9224078_9224524_9224587_9226728
transcript_37480.known	chr17	+	1769	10	FSM	ENSMUSG00000023873.14	ENSMUST00000024650.12	1769	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	3.17785547690558	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTGCGTGCTCACTGCG	NA	False	NA	NA	False	AATAAA	-19	NA	9207164	9227151	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_9207254_9210877_9211585_9212427_9212551_9214029_9214090_9215810_9215936_9219959_9220019_9220601_9220778_9224023_9224078_9224524_9224587_9226837
transcript_37481.known	chr17	-	3223	1	FSM	ENSMUSG00000046173.4	ENSMUST00000057190.4	3223	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTTGTGGTTCACTT	NA	False	NA	NA	False	AATAAA	-40	NA	9888646	9885423	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_9885400_9888600
transcript_37483.known	chr17	-	588	4	FSM	ENSMUSG00000117341.2	ENSMUST00000233960.2	588	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.18544972870135	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAGGAGTTGCTTATGAG	NA	False	NA	NA	False	NA	NA	NA	9945282	9924466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_9924688_9929941_9930149_9941118_9941218_9945221
transcript_37484.nnic	chr17	-	591	4	NNC	ENSMUSG00000117341.2	novel	588	4	NA	NA	-41	35441	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	4.02768199119819	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATCCTCAAATCAGAGCA	NA	False	NA	NA	False	NA	NA	NA	9945331	9888829	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_9888971_9924446_9924688_9941118_9941218_9945221
transcript_37485.known	chr17	-	585	3	FSM	ENSMUSG00000117341.2	ENSMUST00000233459.2	585	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTTCTGGCCATCTTTA	NA	False	NA	NA	False	NA	NA	NA	9945290	9924270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_9924688_9941118_9941218_9945221
transcript_37487.known	chr17	-	1475	5	FSM	ENSMUSG00000037196.7	ENSMUST00000041463.7	1475	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATTCACCCTTTGCCACAC	NA	False	NA	NA	False	AATAAA	-18	NA	11059198	10621940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_10622408_10795393_10795544_10815996_10816169_10996021_10996157_11058647
transcript_37497.known	chr17	+	1915	9	FSM	ENSMUSG00000023827.9	ENSMUST00000024594.9	1915	9	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_3	26.473748790075	629	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGCAAGTGTTTACACAA	NA	False	NA	28	True	ATTAAA	-19	NA	12338170	12438532	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_12338303_12370578_12370837_12417638_12417809_12429097_12429260_12429525_12429680_12432341_12432445_12434162_12434239_12435580_12435780_12437871
transcript_37503.nnic	chr17	+	1619	8	NNC	ENSMUSG00000023827.9	novel	695	3	NA	NA	-21552	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	90.8573674750144	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGCAAGTGTTTACACAA	1543	False	NA	28	True	ATTAAA	-19	NA	12412459	12438532	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_12412554_12417638_12417809_12429097_12429260_12429525_12429680_12432341_12432445_12434162_12434239_12435580_12435780_12437871
transcript_37508.nic	chr17	+	649	2	ISM	ENSMUSG00000023827.9	ENSMUST00000024594.9	1915	9	-87	67524	-87	12466	5prime_fragment	FALSE	canonical	3	227	junction_1	0	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAATCCTTCCAGTG	NA	False	NA	NA	False	NA	NA	NA	12338083	12371008	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_12338303_12370578
transcript_37510.known	chr17	-	3813	2	FSM	ENSMUSG00000014426.10	ENSMUST00000233683.2	3813	2	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCAGTGCTTCAGTGTCTT	NA	False	NA	NA	False	ATTAAA	-35	NA	12537683	12493484	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_12496999_12537384
transcript_37511.known	chr17	+	3174	2	FSM	ENSMUSG00000097350.3	ENSMUST00000181774.3	3174	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTCGGATTGAAGCCTGC	NA	False	NA	NA	False	NA	NA	NA	12537739	12546137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_12538060_12543283
transcript_37513.known	chr17	+	607	2	FSM	ENSMUSG00000078247.6	ENSMUST00000162826.3	607	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTCTGTTTCAGCATCTA	NA	False	NA	NA	False	ATTAAA	-22	NA	12960216	13049223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_12960312_13048711
transcript_37515.known	chr17	-	2092	19	FSM	ENSMUSG00000073460.6	ENSMUST00000163394.3	2092	19	0	0	0	0	multi-exon	TRUE	canonical	3	109	junction_10	13.5984067694222	334	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTACATGGCCAGTGC	2690	False	NA	-8	True	GATAAA	-20	NA	13129117	13107615	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_13107857_13108962_13109062_13109165_13109342_13109607_13109708_13111022_13111066_13111206_13111261_13111645_13111711_13113246_13113303_13114398_13114485_13116147_13116218_13118419_13118564_13118727_13118805_13122094_13122196_13124392_13124482_13124648_13124773_13125384_13125425_13127939_13128014_13128348_13128407_13128722
transcript_37542.known	chr17	+	2446	12	FSM	ENSMUSG00000068039.14	ENSMUST00000151287.8	2446	12	0	0	0	0	multi-exon	FALSE	canonical	3	3235	junction_8	179.622239047203	10702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCCCAAGTGCTGGAATT	NA	False	NA	20	True	NA	NA	NA	13135268	13143954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
transcript_37543.known	chr17	-	1219	4	FSM	ENSMUSG00000057388.10	ENSMUST00000079121.4	1219	4	0	0	0	0	multi-exon	FALSE	canonical	3	996	junction_2	30.9120616516523	4979	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACCCTTACTGTGTTGTG	NA	False	NA	-9	True	ATTAAA	-18	NA	13135232	13130235	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_13130637_13132656_13132889_13134524_13134712_13134833
transcript_37544.known	chr17	+	1902	11	FSM	ENSMUSG00000068039.14	ENSMUST00000089024.13	1902	11	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_1	1038.79458989735	2474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACCTGGGTTCCTGTCCT	NA	False	NA	-1	True	ATTAAA	-14	NA	13135215	13143443	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_13135517_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
transcript_37545.known	chr17	+	614	3	FSM	ENSMUSG00000068039.14	ENSMUST00000143961.2	614	3	0	0	0	0	multi-exon	FALSE	canonical	3	3521	junction_2	31.5	753	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCGTGAATTTGGAGCCT	NA	False	NA	NA	False	AATAAA	-25	NA	13135325	13137266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_13135517_13136684_13136771_13136929
transcript_37546.known	chr17	+	3419	10	FSM	ENSMUSG00000068039.14	ENSMUST00000129632.8	3419	10	0	0	0	0	multi-exon	FALSE	canonical	3	3235	junction_6	171.650232942271	1208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTTCCTGTCCTCAGTTT	NA	False	NA	5	True	ATTAAA	-20	NA	13135335	13143449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_13135517_13136684_13136771_13136929_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
transcript_37551.known	chr17	-	2250	9	FSM	ENSMUSG00000023832.15	ENSMUST00000007005.14	2250	9	0	0	0	0	multi-exon	FALSE	canonical	3	922	junction_2	90.2592619901138	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGCTGGGAGGTATGCA	NA	False	NA	NA	False	AATAAA	-19	NA	13179634	13161776	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881_13179017_13179495
transcript_37558.nnic	chr17	-	567	3	NNC	ENSMUSG00000023832.15	novel	2250	9	NA	NA	-31	-12140	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	491.5	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGGGCCTTGCTGCTTCAT	NA	False	NA	NA	False	NA	NA	NA	13179665	13175429	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_13175692_13178881_13179017_13179495
transcript_37559.known	chr17	-	1800	8	FSM	ENSMUSG00000023832.15	ENSMUST00000159697.2	1800	8	0	0	0	0	multi-exon	FALSE	canonical	3	922	junction_2	94.6542580734146	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATGCAGGGCCCCCAAAA	NA	False	NA	NA	False	NA	NA	NA	13179258	13162329	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881
transcript_37561.known	chr17	+	423	1	FSM	ENSMUSG00000089695.3	ENSMUST00000160654.3	423	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATTTTGTATTTGTAAAG	NA	False	NA	-34	True	NA	NA	NA	13181654	13182077	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_13181700_13182100
transcript_37562.known	chr17	-	2051	8	FSM	ENSMUSG00000060475.14	ENSMUST00000007007.14	2051	8	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_3	195.055094257798	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGTTTGTTTTTTCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	13211146	13185685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_13186939_13188291_13188447_13194182_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13210963
transcript_37566.known	chr17	-	3187	6	FSM	ENSMUSG00000060475.14	ENSMUST00000159986.8	3187	6	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_1	176.193756983612	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATTGTGATTCCTTCCAT	NA	False	NA	NA	False	AATAAA	-20	NA	13211079	13191571	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13210963
transcript_37567.known	chr17	-	446	6	FSM	ENSMUSG00000060475.14	ENSMUST00000233867.2	446	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	266.82773469038	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGGTAGACCCAGCAATC	NA	False	NA	NA	False	NA	NA	NA	13213056	13194303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13212949
transcript_3758.known	chr1	-	2565	12	FSM	ENSMUSG00000026341.17	ENSMUST00000178474.8	2565	12	0	0	0	0	multi-exon	FALSE	canonical	3	2308	junction_6	123.717286351378	1486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGATGGTTTTTCTTCGTG	NA	False	NA	-4	True	AATAAA	-20	NA	125363284	125320642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021
transcript_37602.known	chr17	+	5861	5	FSM	ENSMUSG00000006818.6	ENSMUST00000007012.6	5861	5	0	0	0	0	multi-exon	FALSE	canonical	3	3082	junction_4	106.177622406984	13057	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTGAGTTTGAATACCTA	NA	False	NA	NA	False	NA	NA	NA	13226703	13239021	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912
transcript_37605.known	chr17	+	2463	3	FSM	ENSMUSG00000090211.4	ENSMUST00000160626.4	2463	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATAGCTTTCCTTTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	13721215	13731455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_13721317_13722461_13722565_13729196
transcript_37611.known	chr17	-	365	2	FSM	ENSMUSG00000085705.2	ENSMUST00000128138.2	365	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGTGGTCTGTGGTCATT	NA	False	NA	NA	False	NA	NA	NA	13903778	13900238	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_13900447_13903621
transcript_37612.known	chr17	-	1001	2	FSM	ENSMUSG00000085705.2	ENSMUST00000150889.2	1001	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATAGTGCTATCCAATTTT	NA	False	NA	NA	False	NA	NA	NA	13903749	13899755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_13900447_13903439
transcript_37613.known	chr17	+	798	5	FSM	ENSMUSG00000068036.17	ENSMUST00000156591.8	798	5	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_2	71.3875864559098	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAAACGGCGGCGGCAGC	NA	False	NA	NA	False	NA	NA	NA	13980802	14030755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_13981041_14024200_14024397_14027538_14027655_14029193_14029358_14030671
transcript_37614.known	chr17	+	822	5	FSM	ENSMUSG00000068036.17	ENSMUST00000139347.8	822	5	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_3	94.1577798166461	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGGAGAAGAGAATGCAAGA	NA	False	NA	NA	False	NA	NA	NA	13980800	14030780	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_13981041_14024200_14024397_14027538_14027655_14029196_14029358_14030671
transcript_37615.nic	chr17	+	576	4	ISM	ENSMUSG00000068036.17	ENSMUST00000137708.8	5153	31	8	87297	8	-1467	5prime_fragment	FALSE	canonical	3	188	junction_2	72.8331426389571	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAAGAGAAGGAGGCAT	NA	False	NA	NA	False	NA	NA	NA	13980868	14029288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_13981041_14024200_14024397_14027541_14027655_14029193
transcript_37618.known	chr17	-	1839	3	FSM	ENSMUSG00000038347.16	ENSMUST00000148430.2	1839	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTTGGCCTGGTGTGGT	NA	False	NA	NA	False	NA	NA	NA	13982087	13936697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_13937896_13948183_13948285_13981547
transcript_37619.known	chr17	-	487	1	FSM	ENSMUSG00000089883.2	ENSMUST00000160079.2	487	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CGTACACAAAGAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	14083065	14082578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_14082600_14083100
transcript_37621.known	chr17	-	1800	2	FSM	ENSMUSG00000046991.13	ENSMUST00000228869.2	1800	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAATTAAACAAGAAA	NA	False	NA	NA	False	NA	NA	NA	15163420	15158104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_15159843_15163358
transcript_37622.known	chr17	-	413	2	FSM	ENSMUSG00000046991.13	ENSMUST00000228221.2	413	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGTTCTCAGTTCAGTTG	NA	False	NA	NA	False	NA	NA	NA	15163339	15159572	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_15159843_15163196
transcript_37623.known	chr17	-	1663	12	FSM	ENSMUSG00000023883.14	ENSMUST00000024657.12	1663	12	0	0	0	0	multi-exon	FALSE	canonical	3	756	junction_1	72.874056420468	892	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACGATGACCTTAAACATCA	NA	False	NA	-19	True	AATAAA	-16	NA	15181535	15165270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_15165447_15166460_15166650_15166916_15167026_15170821_15170978_15172881_15173036_15174276_15174387_15175053_15175204_15175294_15175429_15176245_15176330_15176995_15177127_15179680_15179788_15181372
transcript_37628.known	chr17	+	2523	2	FSM	ENSMUSG00000050088.10	ENSMUST00000164837.3	2523	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGACTGGTGCTGTTACTT	NA	False	NA	7	True	AATAAA	-15	NA	15163491	15166196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_15163582_15163763
transcript_37630.known	chr17	+	1466	2	FSM	ENSMUSG00000050088.10	ENSMUST00000174004.2	1466	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGATGTTTAAGGTCATCG	NA	False	NA	8	True	AATAAA	-13	NA	15163530	15165248	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_15163582_15163833
transcript_37637.known	chr17	+	1844	12	FSM	ENSMUSG00000116953.2	ENSMUST00000061688.11	1844	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	75.6540626145262	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGGCTCTGTTCTTAA	NA	False	NA	NA	False	NA	NA	NA	15198729	15211167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_15199162_15199762_15199932_15200519_15200660_15201837_15201940_15202561_15202652_15205079_15205178_15206035_15206173_15206979_15207095_15207857_15207961_15208335_15208366_15209159_15209229_15210808
transcript_37646.nic	chr17	+	1935	11	ISM	ENSMUSG00000116953.2	ENSMUST00000061688.11	1844	12	-5	1494	-5	0	5prime_fragment	FALSE	canonical	0	0	junction_7	77.0690599397709	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATTAATGTTTTGGCCCT	NA	False	NA	NA	False	AAAAAG	-18	NA	15198724	15209673	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_15199162_15199762_15199932_15200519_15200660_15201837_15201940_15202561_15202652_15205079_15205178_15206035_15206173_15206979_15207095_15207857_15207961_15208335_15208366_15209159
transcript_37647.known	chr17	+	2909	11	FSM	ENSMUSG00000116953.2	ENSMUST00000231253.2	2909	11	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_9	68.4675105433227	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGTCTCAAGTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	15199138	15211834	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_15199162_15199762_15199932_15200519_15200660_15201837_15201940_15202561_15202652_15205079_15205178_15206035_15207095_15207857_15207961_15208335_15208366_15209159_15209229_15210808
transcript_37648.known	chr17	+	1586	11	FSM	ENSMUSG00000116953.2	ENSMUST00000231723.2	1586	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	84.5842183861741	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATTAATGTTTTGGCCCT	NA	False	NA	NA	False	AAAAAG	-18	NA	15199168	15209673	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_15199257_15199762_15199932_15200519_15200660_15201837_15201940_15202561_15202652_15205079_15205178_15206035_15206173_15206979_15207095_15207857_15207961_15208335_15208366_15209159
transcript_37668.known	chr17	-	712	4	FSM	ENSMUSG00000116780.2	ENSMUST00000097399.6	712	4	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_1	6.64997911442	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACCAGCATTTTCACCCC	NA	False	NA	NA	False	NA	NA	NA	15199052	15184503	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_15184618_15187807_15187964_15190648_15190856_15198817
transcript_37672.known	chr17	-	459	3	FSM	ENSMUSG00000116780.2	ENSMUST00000231584.2	459	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	7.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACCAGCATTTTCACCCC	NA	False	NA	NA	False	NA	NA	NA	15198955	15184503	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_15184618_15190648_15190856_15198817
transcript_37675.nnic	chr17	-	649	3	Antisense	novelGene_ENSMUSG00000116953.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	35	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAACGGGTTCTTTGGAAG	NA	False	NA	NA	False	AATAAA	-16	NA	15210149	15201657	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr17_-_15202006_15208649_15208854_15210052
transcript_3770.known	chr1	-	856	8	FSM	ENSMUSG00000026341.17	ENSMUST00000188497.7	856	8	0	0	0	0	multi-exon	FALSE	canonical	3	364	junction_7	770.373829211957	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGCAGTCCTTGGAAACT	NA	False	NA	NA	False	NA	NA	NA	125363464	125333616	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021_125363195_125363386
transcript_37702.known	chr17	+	1342	8	FSM	ENSMUSG00000036552.20	ENSMUST00000231568.2	1342	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	40.5950635382366	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTATTGTCATGTGTTAA	NA	False	NA	NA	False	NA	NA	NA	15273103	15310306	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_15273346_15273475_15273650_15277012_15277097_15279021_15279099_15279605_15279732_15280027_15280247_15281330_15281445_15310000
transcript_37714.known	chr17	-	752	4	FSM	ENSMUSG00000079710.11	ENSMUST00000179539.9	752	4	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_1	7.25718035235908	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCATCCTTCAAAATAAATGA	8865	False	NA	NA	False	NA	NA	NA	15230444	15216077	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_15216212_15219403_15219560_15222241_15222449_15230189
transcript_37717.known	chr17	-	720	4	FSM	ENSMUSG00000079707.11	ENSMUST00000040746.8	720	4	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_1	6.37704215656966	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGAGCCTCGTGTTACC	NA	False	NA	NA	False	AATAAA	-14	NA	15261750	15247415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_15247580_15250770_15250927_15253608_15253816_15261557
transcript_37726.nnic	chr17	-	652	3	Antisense	novelGene_ENSMUSG00000116895.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	36	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAACGGGTTCTTTGGAAG	NA	False	NA	NA	False	AATAAA	-16	NA	15241519	15233029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr17_-_15233378_15240017_15240222_15241419
transcript_37730.known	chr17	-	517	3	FSM	ENSMUSG00000079707.11	ENSMUST00000097398.12	517	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	7.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGCCTCGTGTTACCTT	NA	False	NA	NA	False	AATAAA	-16	NA	15261701	15247413	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_15247580_15253608_15253816_15261557
transcript_37734.known	chr17	-	2253	1	FSM	ENSMUSG00000079710.11	ENSMUST00000232299.2	2253	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCAGAAATGCATTTTTAA	8878	False	NA	NA	False	AATAAA	-27	NA	15230431	15228178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_15228200_15230400
transcript_37735.known	chr17	+	1684	12	FSM	ENSMUSG00000116895.2	ENSMUST00000097395.5	1684	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	68.2306491805794	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTGTAGGTGGGACTTTT	NA	False	NA	NA	False	AGTAAA	-15	NA	15230437	15242711	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_15230534_15231134_15231304_15231891_15232032_15233209_15233312_15233933_15234024_15236450_15236549_15237402_15237540_15238346_15238462_15239227_15239331_15239703_15239734_15240527_15240597_15242176
transcript_37736.known	chr17	+	788	6	FSM	ENSMUSG00000036552.20	ENSMUST00000226599.2	788	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	84.7216619289305	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTCCCTCTGAATGGAC	NA	False	NA	NA	False	ATTAAA	-20	NA	15261895	15266171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_15261909_15262509_15262679_15263266_15263407_15264584_15264687_15265308_15265399_15265897
transcript_37737.known	chr17	+	1571	7	FSM	ENSMUSG00000036552.20	ENSMUST00000231241.2	1571	7	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_6	30.7064958744707	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCATGAACTCTATGTTGC	NA	False	NA	5	True	ATTAAA	-18	NA	15273320	15284485	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_15273650_15277012_15277097_15279021_15279099_15279605_15279732_15280027_15280247_15281330_15281445_15283863
transcript_37742.nnic	chr17	-	1237	5	NNC	ENSMUSG00000097624.3	novel	1179	5	NA	NA	-45	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	14.4805904575746	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCTTTTCTTTCTTTCT	NA	False	NA	-4	True	GATAAA	-16	NA	15461090	15451842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_15452674_15453032_15453145_15454190_15454265_15460531_15460624_15460962
transcript_37743.known	chr17	-	1179	5	FSM	ENSMUSG00000097624.3	ENSMUST00000181658.2	1179	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	9.14808723176599	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAATGTCTCTTTTCTTTCT	NA	False	NA	-8	True	GATAAA	-12	NA	15461045	15451846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_15452674_15453041_15453145_15454190_15454265_15460531_15460624_15460962
transcript_37748.nnic	chr17	-	1125	4	NIC	ENSMUSG00000097624.3	novel	1179	5	NA	NA	-45	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	23.2999761564017	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCTTTTCTTTCTTTCT	NA	False	NA	-4	True	GATAAA	-16	NA	15461090	15451842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_15452674_15454190_15454265_15460531_15460624_15460962
transcript_37749.nic	chr17	-	1522	4	NIC	ENSMUSG00000097624.3	novel	1179	5	NA	NA	29	0	intron_retention	FALSE	canonical	3	33	junction_1	9.39266853573691	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCTTTTCTTTCTTTCT	NA	False	NA	-4	True	GATAAA	-16	NA	15461016	15451842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_15453145_15454190_15454265_15460531_15460624_15460962
transcript_37752.nnic	chr17	-	909	4	NNC	ENSMUSG00000097624.3	novel	1218	5	NA	NA	-45	-4596	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	16.779617264871	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGATCTCCGCTGCTCAT	NA	False	NA	NA	False	AGTAAA	-24	NA	15461090	15456442	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_15456884_15457287_15457536_15460531_15460624_15460962
transcript_37755.nnic	chr17	-	802	4	NNC	ENSMUSG00000097624.3	novel	1218	5	NA	NA	-45	-4703	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	16.779617264871	63	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTTAAAGTTTCTTTTCA	NA	False	NA	NA	False	AATACA	-15	NA	15461090	15456549	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_15456884_15457287_15457536_15460531_15460624_15460962
transcript_37756.nnic	chr17	-	1051	3	NIC	ENSMUSG00000097624.3	novel	1179	5	NA	NA	-45	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	27.5	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCTTTTCTTTCTTTCT	NA	False	NA	-4	True	GATAAA	-16	NA	15461090	15451842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_15452674_15460531_15460624_15460962
transcript_37758.known	chr17	-	3581	11	FSM	ENSMUSG00000014773.14	ENSMUST00000014917.8	3581	11	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_7	1.34536240470737	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGGTGTGACTTTTTAG	NA	False	NA	NA	False	AATAAA	-16	NA	15596238	15587615	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_15588298_15588395_15588514_15588628_15589428_15590468_15590686_15590792_15590963_15591084_15591216_15591867_15591929_15593698_15593957_15594151_15594213_15594927_15595222_15595448
transcript_37759.known	chr17	+	4420	11	FSM	ENSMUSG00000014763.9	ENSMUST00000055352.8	4420	11	0	0	0	0	multi-exon	TRUE	canonical	2	12	junction_2	12.6526677028997	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTAAATAGGCCACTGTGT	NA	False	NA	NA	False	AATAAA	-24	NA	15616463	15653700	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_15616823_15622006_15623392_15626016_15626198_15627858_15627961_15634940_15635114_15637894_15637988_15643139_15643347_15644531_15644641_15646450_15646538_15651838_15651891_15652028
transcript_37761.nnic	chr17	-	648	4	NNC	ENSMUSG00000116718.2	novel	1056	5	NA	NA	-5950	305	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.471404520791032	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAGAGGTGATCGTTGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	15661177	15641758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_15641970_15644545_15644706_15652001_15652104_15661002
transcript_37766.nic	chr17	+	2685	2	ISM	ENSMUSG00000014763.9	ENSMUST00000055352.8	4420	11	50	29318	4	-4733	5prime_fragment	FALSE	canonical	3	53	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTTTGTTTTTTTTATT	NA	False	NA	NA	False	ATTAAA	-15	NA	15616513	15624382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_15616823_15622006
transcript_37767.known	chr17	+	5787	11	FSM	ENSMUSG00000014763.9	ENSMUST00000231274.2	5787	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	14.1350627872677	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCACTTTTTTTTTCTTTA	NA	False	NA	NA	False	AATAAA	-26	NA	15616509	15653845	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_15616823_15622006_15624660_15626016_15626198_15627858_15627961_15634940_15635114_15637894_15637988_15643139_15643347_15644531_15644641_15646450_15646538_15651838_15651891_15652028
transcript_37771.known	chr17	-	1435	6	FSM	ENSMUSG00000014769.11	ENSMUST00000232500.2	1435	6	0	0	0	0	multi-exon	FALSE	canonical	1	85	junction_5	1937.38312163599	1124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTTTCTTTATCTGGA	NA	False	NA	-19	True	AATATA	-2	NA	15720013	15695978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_15696468_15697576_15697684_15710417_15710548_15713359_15713442_15714677_15714786_15719494
transcript_37774.known	chr17	-	1758	6	FSM	ENSMUSG00000014769.11	ENSMUST00000014913.11	1758	6	0	0	0	0	multi-exon	FALSE	canonical	3	4315	junction_4	304.330741135364	14729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGTGGCTGCACTAGTTG	NA	False	NA	NA	False	NA	NA	NA	15718560	15695282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_15696468_15697576_15697684_15710417_15710548_15713359_15713442_15714677_15714786_15718414
transcript_37775.known	chr17	-	1970	5	FSM	ENSMUSG00000014769.11	ENSMUST00000231341.2	1970	5	0	0	0	0	multi-exon	FALSE	canonical	3	4315	junction_3	328.285698744249	949	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATTTTCTTACACTGTGT	NA	False	NA	-13	True	ATTAAA	-15	NA	15718601	15696220	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_15697684_15710417_15710548_15713359_15713442_15714677_15714786_15718414
transcript_37779.nic	chr17	+	1911	10	NIC	ENSMUSG00000014767.18	novel	2067	10	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_2	107.763229258625	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGCTTGTCTGTT	NA	False	NA	23	True	AAGAAA	-31	NA	15720175	15737689	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_15720287_15721415_15721465_15721573_15721620_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
transcript_37781.known	chr17	+	1891	9	FSM	ENSMUSG00000014767.18	ENSMUST00000014911.12	1891	9	0	0	0	0	multi-exon	TRUE	canonical	3	123	junction_2	77.8728932299295	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGCTTGTCTGTT	NA	False	NA	23	True	AAGAAA	-31	NA	15720149	15737689	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_15720287_15721415_15721465_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
transcript_3779.known	chr1	+	2733	16	FSM	ENSMUSG00000026342.11	ENSMUST00000027580.11	2733	16	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	11.5808270669912	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGCTTAAGCGATGACAT	NA	False	NA	NA	False	TTTAAA	-41	NA	125488752	125523557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_125489022_125490011_125490103_125490236_125490379_125494204_125494349_125496283_125496347_125498283_125498366_125500049_125500241_125502402_125502485_125503908_125503997_125506999_125507065_125512189_125512295_125512810_125512971_125515101_125515193_125517547_125517703_125518769_125518867_125522649
transcript_37790.nnic	chr17	-	1045	7	NNC	ENSMUSG00000014771.14	novel	1120	6	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	325.810101473577	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTCAGTACCTCATAATT	NA	False	NA	-14	True	NA	NA	NA	15747570	15741836	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_15742056_15742177_15742292_15743064_15743169_15745530_15745663_15746634_15746875_15747252_15747364_15747445
transcript_37793.known	chr17	+	1652	7	FSM	ENSMUSG00000014767.18	ENSMUST00000118001.8	1652	7	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_5	125.630963097832	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGCTTGTCTGTT	NA	False	NA	23	True	AAGAAA	-31	NA	15720171	15737689	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_15720287_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15735877_15735973_15736965
transcript_37794.known	chr17	-	1120	6	FSM	ENSMUSG00000014771.14	ENSMUST00000054450.7	1120	6	0	0	0	0	multi-exon	FALSE	canonical	3	811	junction_3	58.5409258553364	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTCAGTACCTCATAATT	NA	False	NA	-14	True	NA	NA	NA	15747563	15741836	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_15742056_15742177_15742292_15743064_15743169_15745530_15745663_15746634_15746875_15747252
transcript_37795.known	chr17	+	639	4	FSM	ENSMUSG00000014767.18	ENSMUST00000155051.8	639	4	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_2	125.039549298967	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTCAGTACAGCAATCAAC	NA	False	NA	NA	False	NA	NA	NA	15720189	15724709	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_15720287_15721415_15721620_15723226_15723391_15724535
transcript_37796.known	chr17	-	1447	11	FSM	ENSMUSG00000051977.17	ENSMUST00000147532.8	1447	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	3.59026461420325	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAACAAGCATTTCTATA	NA	False	NA	NA	False	AATAAA	-26	NA	15784602	15773485	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_15773808_15774949_15775018_15775348_15775621_15775827_15775930_15777562_15777720_15777808_15777837_15779284_15779335_15782676_15782785_15783075_15783200_15783482_15783594_15784497
transcript_378.known	SIRV5	+	2085	17	FSM	SIRV5A	SIRV508	2085	17	0	0	0	0	multi-exon	FALSE	canonical	3	2297	junction_10	2773.74385702339	3507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	1008	10991	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
transcript_37800.known	chr17	+	798	1	FSM	ENSMUSG00000116757.2	ENSMUST00000231695.2	798	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	151	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATGTACACTAAATTTTC	NA	False	NA	NA	False	AAAAAG	-33	NA	16777507	16778305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_16777500_16778300
transcript_37804.known	chr17	+	1598	4	FSM	ENSMUSG00000060149.8	ENSMUST00000232328.2	1598	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	5.55777733351102	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACATACTGGAGAGAAACCC	NA	False	NA	NA	False	NA	NA	NA	17171813	17193939	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_17171971_17191161_17191289_17191432_17191494_17192686
transcript_37805.nnic	chr17	+	2863	4	NNC	ENSMUSG00000060149.8	novel	1598	4	NA	NA	41	67398	at_least_one_novel_splicesite	FALSE	canonical	1	14	junction_2	55.1744707470966	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCGAGTATGCTGCTCTT	NA	False	NA	30	True	NA	NA	NA	17171854	17261817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_17171971_17191161_17191289_17257906_17257968_17259258
transcript_37807.known	chr17	+	1964	3	FSM	ENSMUSG00000060149.8	ENSMUST00000190415.2	1964	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	11	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCCCAAGTGGCCTACTC	NA	False	NA	24	True	NA	NA	NA	17171800	17194419	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_17171971_17191432_17191494_17192686
transcript_37818.nnic	chr17	+	2618	7	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	-59007	164	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	98.0487407137672	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGTATGCTGCTCTGTT	NA	False	NA	NA	False	NA	NA	NA	17225367	17310054	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_17225539_17281029_17281160_17305782_17305910_17306151_17306213_17307505_17308923_17309258_17309519_17309602
transcript_37834.nnic	chr17	+	2699	6	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	-288	164	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	105.978110947497	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGTATGCTGCTCTGTT	NA	False	NA	NA	False	NA	NA	NA	17284086	17310054	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_17284469_17305782_17305910_17306151_17306213_17307505_17308902_17309237_17309519_17309602
transcript_37837.nnic	chr17	+	2699	6	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	-288	164	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	105.978110947497	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGTATGCTGCTCTGTT	NA	False	NA	NA	False	NA	NA	NA	17284086	17310054	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_17284469_17305782_17305910_17306151_17306213_17307505_17308923_17309258_17309519_17309602
transcript_37838.nnic	chr17	+	2696	6	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	-288	162	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	105.978110947497	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGAGTATGCTGCTCTG	NA	False	NA	NA	False	NA	NA	NA	17284086	17310052	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_17284469_17305782_17305910_17306151_17306213_17307505_17308923_17309258_17309552_17309636
transcript_3786.nnic	chr1	-	526	3	Antisense	novelGene_ENSMUSG00000036155.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_2	0.5	21	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAAGTCCTTCCCAATTG	NA	False	NA	NA	False	AATAAA	-25	NA	127412129	127410852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr1_-_127411046_127411644_127411801_127411952
transcript_37861.nnic	chr17	+	2706	5	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	-288	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	95.1955224787385	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGATGCAACATAGTTTATG	NA	False	NA	NA	False	NA	NA	NA	17284086	17309893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_17284469_17305782_17305910_17306151_17306213_17307505_17308902_17309153
transcript_37862.nnic	chr17	+	2863	5	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	-288	160	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	95.1955224787385	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTCTGAGTATGCTGCTC	NA	False	NA	NA	False	NA	NA	NA	17284086	17310050	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_17284469_17305782_17305910_17306151_17306213_17307505_17308923_17309174
transcript_37868.known	chr17	+	2667	4	FSM	ENSMUSG00000096696.2	ENSMUST00000127027.2	2667	4	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_3	31.9826341768293	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGATGCAACATAGTTT	NA	False	NA	NA	False	NA	NA	NA	17284374	17309890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_17284469_17305782_17305910_17306151_17306213_17307505
transcript_37877.nnic	chr17	+	2486	6	Fusion	ENSMUSG00000095990.2_ENSMUSG00000096696.2	novel	2667	4	NA	NA	-79	172	multi-exon	TRUE	non_canonical	0	0	junction_4	109.232595867717	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTCTGAGTATGCTGCTC	NA	False	NA	NA	False	NA	NA	NA	17284295	17367265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr17_+_17284469_17362997_17363125_17363366_17363428_17364720_17366138_17366473_17366734_17366817
transcript_37885.nnic	chr17	+	2645	6	NNC	ENSMUSG00000095990.2	novel	2684	4	NA	NA	-68	313	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	117.263122933001	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGAAAAGAATGTAACTG	NA	False	NA	NA	False	NA	NA	NA	17341608	17367406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_17341800_17362997_17363125_17363366_17363428_17364720_17366138_17366473_17366734_17366817
transcript_37886.nnic	chr17	+	2505	6	NNC	ENSMUSG00000095990.2	novel	2684	4	NA	NA	-68	174	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	117.263122933001	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGAGTATGCTGCTCTG	NA	False	NA	NA	False	NA	NA	NA	17341608	17367267	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_17341800_17362997_17363125_17363366_17363428_17364720_17366138_17366473_17366767_17366851
transcript_3790.known	chr1	-	447	1	FSM	ENSMUSG00000099471.2	ENSMUST00000170338.3	447	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1819	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCACACCGGAGGTTAAT	NA	False	NA	NA	False	NA	NA	NA	127210845	127210398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_127210400_127210800
transcript_37903.known	chr17	+	2684	4	FSM	ENSMUSG00000095990.2	ENSMUST00000147630.2	2684	4	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_3	43.3615292883245	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTCACCTTCTAAGGGAT	NA	False	NA	NA	False	NA	NA	NA	17341676	17367093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_17341800_17362997_17363125_17363366_17363428_17364720
transcript_37909.known	chr17	+	2194	4	FSM	ENSMUSG00000116802.2	ENSMUST00000231355.2	2194	4	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_3	12.3917535302941	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGTATGAATGTAATTAATG	6224	False	NA	NA	False	NA	NA	NA	17455133	17486325	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_17455288_17482739_17482867_17483108_17483170_17484473
transcript_37912.known	chr17	+	526	4	FSM	ENSMUSG00000072761.11	ENSMUST00000186431.7	526	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	17.5689119374726	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAAACCTTTTCATTTCAC	NA	False	NA	NA	False	NA	NA	NA	17514704	17538366	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_17514852_17536339_17536467_17536705_17536767_17538175
transcript_37913.nnic	chr17	+	565	3	NNC	ENSMUSG00000072761.11	novel	526	4	NA	NA	-65	54170	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTTACACACCAGTCGT	NA	False	NA	NA	False	NA	NA	NA	17514639	17593943	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_17514852_17590167_17590297_17593719
transcript_37914.nnic	chr17	+	643	3	NNC	ENSMUSG00000072761.11	novel	526	4	NA	NA	-65	54174	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.5	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTACACACCAGTCGTTGGC	NA	False	NA	NA	False	NA	NA	NA	17514639	17593947	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_17514852_17590167_17590371_17593719
transcript_37915.nnic	chr17	+	2178	3	NIC	ENSMUSG00000072761.11	novel	526	4	NA	NA	-63	309	intron_retention	FALSE	canonical	1	4	junction_1	38	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGGGAAATGGTAGAATAT	NA	False	NA	47	True	NA	NA	NA	17514641	17540082	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_17514852_17536705_17536767_17538175
transcript_37927.known	chr17	+	3116	6	FSM	ENSMUSG00000047786.13	ENSMUST00000115576.3	3116	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.74355957741627	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTGTCCATTTTTTTT	NA	False	NA	12	True	AATAAA	-26	NA	17622933	17679649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_17623289_17647417_17647582_17663909_17664051_17666229_17666326_17674521_17674600_17677367
transcript_37928.known	chr17	+	2678	3	FSM	ENSMUSG00000047786.13	ENSMUST00000140134.2	2678	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTGTCCATTTTTTTT	NA	False	NA	12	True	AATAAA	-26	NA	17669081	17679649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_17669400_17674521_17674600_17677367
transcript_37929.known	chr17	+	1596	8	FSM	ENSMUSG00000116564.2	ENSMUST00000232396.2	1596	8	0	0	0	0	multi-exon	FALSE	canonical	3	346	junction_3	41.8120185826896	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAATTTGTCTTTTGAA	NA	False	NA	NA	False	AATGAA	-20	NA	17594833	17608016	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_17594933_17597980_17598120_17598744_17598862_17601073_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325
transcript_3793.nnic	chr1	-	439	2	NNC	ENSMUSG00000102014.2	novel	465	2	NA	NA	168	1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTGATGAATTTAGCATAT	NA	False	NA	NA	False	AATAAA	-15	NA	127701623	127681351	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_127681691_127701523
transcript_37930.known	chr17	+	3220	10	FSM	ENSMUSG00000116564.2	ENSMUST00000024620.8	3220	10	0	0	0	0	multi-exon	FALSE	canonical	3	346	junction_3	38.1895855495244	646	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTTGGCTTTACTTCA	NA	False	NA	10	True	AATAAA	-15	NA	17594570	17615161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_17594933_17597980_17598120_17598744_17598862_17601073_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325_17607836_17610229_17610327_17613716
transcript_3794.known	chr1	-	465	2	FSM	ENSMUSG00000102014.2	ENSMUST00000188163.2	465	2	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_1	0	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTTGATGAATTTAGCATA	NA	False	NA	NA	False	AATAAA	-14	NA	127701791	127681352	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_127681691_127701664
transcript_37942.known	chr17	-	12052	18	FSM	ENSMUSG00000023845.8	ENSMUST00000041047.4	12052	18	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_8	4.93557105021248	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTATGGATTCATCTGA	9893	False	NA	NA	False	AATAAA	-17	NA	17845309	17741671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_17750143_17750738_17750821_17751399_17751541_17757175_17757338_17758781_17758967_17765072_17765230_17766645_17766830_17773131_17773221_17773423_17773585_17783014_17783147_17786944_17787077_17788582_17788697_17791135_17791291_17791887_17792009_17794208_17794341_17795510_17795650_17798793_17799635_17844655
transcript_37949.known	chr17	+	500	1	FSM	ENSMUSG00000080316.12	ENSMUST00000178888.2	500	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGGGTGTTTGTTTGCTTT	NA	False	NA	NA	False	AATAAA	-20	NA	18058833	18059333	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_18058800_18059300
transcript_3795.nnic	chr1	-	364	2	NNC	ENSMUSG00000102014.2	novel	465	2	NA	NA	168	-74	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCTTCTTGATCTATATA	NA	False	NA	NA	False	AATAAA	-21	NA	127701623	127681426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_127681691_127701523
transcript_37959.known	chr17	+	2410	15	FSM	ENSMUSG00000007564.16	ENSMUST00000007708.14	2410	15	0	0	0	0	multi-exon	FALSE	canonical	3	1213	junction_1	77.3781135010385	1485	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCTTAGTAATCGGAATGG	NA	False	NA	39	True	AATAAA	-24	NA	21165572	21186178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
transcript_37973.known	chr17	+	3800	5	FSM	ENSMUSG00000067942.7	ENSMUST00000088811.7	3800	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	17.6405073623181	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTTTCTTTTGTTTGT	NA	False	NA	13	True	AGTAAA	-24	NA	21229202	21249123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_21229249_21231937_21232035_21240333_21240461_21240967_21241097_21245722
transcript_37975.known	chr17	+	2090	5	FSM	ENSMUSG00000067942.7	ENSMUST00000232473.2	2090	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	23.6801604724292	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTGGGGTTAAAATTGG	NA	False	NA	NA	False	AATAAA	-41	NA	21229164	21263332	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_21229249_21231937_21232040_21240333_21240461_21240967_21241097_21261684
transcript_37976.known	chr17	+	1041	5	FSM	ENSMUSG00000067942.7	ENSMUST00000232354.2	1041	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	15.2807067899361	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCAAACCTCAAGCCTCAC	NA	False	NA	NA	False	NA	NA	NA	21229212	21246252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_21229371_21231937_21232035_21240333_21240461_21240967_21241097_21245722
transcript_37977.known	chr17	+	552	5	FSM	ENSMUSG00000067942.7	ENSMUST00000232663.2	552	5	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_4	19.0394327646598	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACATCCAGCCAGGAACACC	NA	False	NA	NA	False	NA	NA	NA	21229305	21261818	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_21229371_21231937_21232035_21240333_21240461_21240967_21241097_21261684
transcript_37979.known	chr17	+	2917	4	FSM	ENSMUSG00000062743.10	ENSMUST00000162659.2	2917	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0.471404520791032	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGTGGTTTTGTTTTTTGT	NA	False	NA	NA	False	AATAAA	-19	NA	21604009	21619527	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_21604283_21612722_21612814_21613437_21613565_21617101
transcript_37981.nnic	chr17	+	2113	5	NIC	ENSMUSG00000023882.16	novel	2832	5	NA	NA	-11	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_1	8.22724133595217	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACCGTTTTGTTTTCTTT	NA	False	NA	NA	False	AATAAA	-20	NA	21643477	21655416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_21643580_21647593_21647634_21647998_21648091_21650456_21650584_21653664
transcript_37982.known	chr17	+	2832	5	FSM	ENSMUSG00000023882.16	ENSMUST00000165230.8	2832	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	11.7340317027013	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGGCATGTTCCTTGAC	NA	False	NA	NA	False	NA	NA	NA	21643488	21655902	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_21643824_21647593_21647634_21647998_21648091_21650456_21650584_21653664
transcript_37983.known	chr17	+	822	4	FSM	ENSMUSG00000023882.16	ENSMUST00000167749.2	822	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	10.1980390271856	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTTCGTGCTGGAACA	NA	False	NA	NA	False	NA	NA	NA	21643519	21654207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_21643580_21647998_21648091_21650456_21650584_21653664
transcript_37984.known	chr17	+	2300	4	FSM	ENSMUSG00000023882.16	ENSMUST00000007884.15	2300	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	13.8884444373331	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACCGTTTTGTTTTCTTT	NA	False	NA	NA	False	AATAAA	-20	NA	21643494	21655416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_21643824_21647998_21648091_21650456_21650584_21653664
transcript_37985.known	chr17	+	2574	5	FSM	ENSMUSG00000023892.9	ENSMUST00000039577.8	2574	5	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	22.3271135617661	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCTTCTCTCTCTCTGT	NA	False	NA	2	True	AATAAA	-18	NA	21670635	21685849	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_21670684_21672698_21672790_21676558_21676651_21681922_21682050_21683633
transcript_3799.known	chr1	+	4511	10	FSM	ENSMUSG00000026349.15	ENSMUST00000112570.2	4511	10	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_9	104.758039851747	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGGATTGTGTGAACTATT	NA	False	NA	27	True	ATTAAA	-21	NA	127701900	127733669	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991_127723055_127725577_127725624_127727126_127727291_127729342_127729414_127729898_127731031_127731128
transcript_37997.known	chr17	+	3164	5	FSM	ENSMUSG00000051341.7	ENSMUST00000233281.2	3164	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	0.707106781186548	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAAAAAAAAATCATA	NA	False	NA	NA	False	NA	NA	NA	21755800	21782863	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_21756096_21758834_21758933_21775246_21775338_21777396_21777524_21780310
transcript_37998.nnic	chr17	+	452	3	NNC	ENSMUSG00000051341.7	novel	3164	5	NA	NA	60	-23184	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	6.5	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCGAGTGATGCTGTCCTT	NA	False	NA	NA	False	AATAAA	-18	NA	21755860	21759144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_21756096_21758834_21758933_21759025
transcript_38.known	ERCC-00077	+	258	1	FSM	ERCC-00077A	DQ516742	258	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	AATAAA	-33	NA	0	258	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00077_+_0_300
transcript_38002.nnic	chr17	+	2587	7	NNC	ENSMUSG00000067931.7	novel	2652	6	NA	NA	-35	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_6	39.6880194629171	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCATGGAAAGATTTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	21787234	21808961	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_21787508_21789310_21789390_21794118_21794219_21803291_21803405_21805041_21805169_21806966_21807255_21807354
transcript_38003.known	chr17	+	2652	6	FSM	ENSMUSG00000067931.7	ENSMUST00000088787.7	2652	6	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_2	15.6025638918737	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCATGGAAAGATTTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	21787269	21808961	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_21787508_21789310_21789390_21794118_21794219_21803291_21803405_21805041_21805169_21806966
transcript_38004.nnic	chr17	+	2718	6	NNC	ENSMUSG00000067931.7	novel	2652	6	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	38.4010416525385	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCATGGAAAGATTTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	21787236	21808961	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_21787508_21789277_21789390_21794118_21794219_21803291_21803405_21805041_21805169_21806966
transcript_38006.nic	chr17	+	423	3	ISM	ENSMUSG00000067931.7	ENSMUST00000088787.7	2652	6	-35	14772	-35	-14772	5prime_fragment	FALSE	canonical	3	80	junction_2	12.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTGATTCTCCAGTAAAC	NA	False	NA	NA	False	NA	NA	NA	21787234	21794189	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_21787508_21789310_21789390_21794118
transcript_38008.nnic	chr17	+	1121	7	NNC	ENSMUSG00000035868.10	novel	4354	6	NA	NA	-97	-2293	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	11.3051119214077	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGATTCTGTGCCTTATTA	NA	False	NA	NA	False	AATAAA	-20	NA	21869447	21879163	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_21869794_21870722_21870819_21871186_21871266_21875011_21875249_21876434_21876528_21877828_21877956_21879020
transcript_3801.known	chr1	+	6738	9	FSM	ENSMUSG00000026349.15	ENSMUST00000027587.15	6738	9	0	0	0	0	multi-exon	FALSE	canonical	3	399	junction_6	47.8289595851718	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAGGCTGAAACATGTTT	NA	False	NA	8	True	AATAAA	-22	NA	127701900	127735798	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991_127723055_127725577_127725624_127727126_127727291_127729342_127729414_127729898
transcript_38012.nnic	chr17	+	886	7	NNC	ENSMUSG00000035868.10	novel	4354	6	NA	NA	-42	-2293	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_1	12.3107902084129	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGATTCTGTGCCTTATTA	NA	False	NA	NA	False	AATAAA	-20	NA	21869502	21879163	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_21869614_21870722_21870819_21871186_21871266_21875011_21875249_21876434_21876528_21877828_21877956_21879020
transcript_38016.nnic	chr17	+	946	7	NNC	ENSMUSG00000035868.10	novel	4354	6	NA	NA	-21	-2293	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	12.3107902084129	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGATTCTGTGCCTTATTA	NA	False	NA	NA	False	AATAAA	-20	NA	21869523	21879163	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_21869695_21870722_21870819_21871186_21871266_21875011_21875249_21876434_21876528_21877828_21877956_21879020
transcript_38023.nnic	chr17	+	851	6	NNC	ENSMUSG00000035868.10	novel	4354	6	NA	NA	-22	-2293	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_5	10.2489023802552	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGATTCTGTGCCTTATTA	NA	False	NA	NA	False	AATAAA	-20	NA	21869522	21879163	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_21869695_21871186_21871266_21875011_21875249_21876434_21876528_21877828_21877956_21879020
transcript_38029.known	chr17	+	4354	6	FSM	ENSMUSG00000035868.10	ENSMUST00000232827.2	4354	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	11.0018180315801	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGGGACTGGGGTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	21869544	21883882	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_21869794_21871186_21871266_21875094_21875249_21876434_21876528_21877828_21877956_21880230
transcript_3804.known	chr1	+	1040	5	FSM	ENSMUSG00000026349.15	ENSMUST00000149760.8	1040	5	0	0	0	0	multi-exon	FALSE	canonical	3	475	junction_4	23.7539470404394	531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127701900	127723537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991
transcript_38042.nic	chr17	+	796	5	ISM	ENSMUSG00000067928.7	ENSMUST00000073312.7	4209	6	-96	4426	-96	-4426	5prime_fragment	FALSE	canonical	3	47	junction_2	7.1239034243875	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTCAATGGAATTTCCTT	NA	False	NA	NA	False	AAAAAG	-39	NA	21926626	21940191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_21926876_21927591_21927704_21928185_21928278_21938027_21938104_21939924
transcript_38043.nic	chr17	+	1106	5	ISM	ENSMUSG00000067928.7	ENSMUST00000073312.7	4209	6	-96	4116	-96	-4116	5prime_fragment	FALSE	canonical	3	47	junction_2	7.1239034243875	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTGTTCCCACTCACCC	NA	False	NA	NA	False	NA	NA	NA	21926626	21940501	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_21926876_21927591_21927704_21928185_21928278_21938027_21938104_21939924
transcript_38046.known	chr17	+	4209	6	FSM	ENSMUSG00000067928.7	ENSMUST00000073312.7	4209	6	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_5	11.689311356962	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATGTGGAAATTCAATGAG	NA	False	NA	9	True	AATAAA	-24	NA	21926722	21944617	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_21926876_21927591_21927704_21928185_21928278_21938027_21938104_21939924_21940052_21940968
transcript_38048.known	chr17	+	640	6	FSM	ENSMUSG00000061544.14	ENSMUST00000182827.8	640	6	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_1	15.5254629560603	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTGAATCTGAGATTGTC	NA	False	NA	NA	False	NA	NA	NA	21949775	21964042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_21950033_21955038_21955103_21958415_21958494_21961476_21961604_21962839_21962939_21964027
transcript_3805.known	chr1	+	665	4	FSM	ENSMUSG00000026349.15	ENSMUST00000125760.8	665	4	0	0	0	0	multi-exon	FALSE	canonical	3	495	junction_3	16.8193010820572	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCCCATGGCTTCAGTGT	NA	False	NA	NA	False	NA	NA	NA	127701900	127721326	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094
transcript_38050.nic	chr17	+	1424	6	NIC	ENSMUSG00000061544.14	novel	640	6	NA	NA	-115	634	combination_of_known_junctions	FALSE	canonical	3	20	junction_5	67.9923525111464	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTTTCCTTTACCTGTG	NA	False	NA	4	True	AATAAA	-17	NA	21949660	21988957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_21950033_21955038_21955103_21958415_21958494_21961476_21961604_21962839_21962939_21988273
transcript_38051.known	chr17	+	4525	6	FSM	ENSMUSG00000061544.14	ENSMUST00000065871.14	4525	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	72.3756865252413	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAGGACTTGTATCATAG	NA	False	NA	11	True	AATAAA	-25	NA	21952704	21967949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_21952940_21955038_21955103_21958415_21958494_21961476_21961604_21962839_21962939_21964027
transcript_38053.known	chr17	+	653	6	FSM	ENSMUSG00000061544.14	ENSMUST00000183192.8	653	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	86.0265075427336	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCCACATCATGGTCTCC	NA	False	NA	NA	False	NA	NA	NA	21952704	21988323	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_21952940_21955038_21955103_21958415_21958494_21961476_21961604_21962839_21962939_21988273
transcript_38058.nic	chr17	+	515	3	ISM	ENSMUSG00000061544.14	ENSMUST00000182827.8	640	6	-115	5548	-115	3432	5prime_fragment	FALSE	canonical	3	170	junction_1	7	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTTACCCCCACTTCT	NA	False	NA	NA	False	AATACA	-8	NA	21949660	21958494	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_21950033_21955038_21955103_21958415
transcript_38067.known	chr17	-	2735	5	FSM	ENSMUSG00000069743.6	ENSMUST00000232918.2	2735	5	0	0	0	0	multi-exon	TRUE	canonical	3	6	junction_3	16.8077363139716	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTAAAAATATAGTGAATGT	NA	False	NA	NA	False	NA	NA	NA	22064753	22036848	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_22039170_22040050_22040178_22042824_22042873_22059585_22059696_22064624
transcript_3807.known	chr1	+	4500	3	FSM	ENSMUSG00000026349.15	ENSMUST00000126850.8	4500	3	0	0	0	0	multi-exon	FALSE	canonical	3	526	junction_2	4	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127701900	127723537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_127702123_127702837_127702920_127719341
transcript_38070.known	chr17	-	2221	5	FSM	ENSMUSG00000078546.9	ENSMUST00000190066.7	2221	5	0	0	0	0	multi-exon	TRUE	canonical	2	10	junction_1	2.29128784747792	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACCTAAGAAAATACCTGGT	NA	False	NA	NA	False	NA	NA	NA	22128907	22098550	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_22100076_22100938_22101066_22106291_22106340_22127029_22127178_22128534
transcript_38072.nic	chr17	-	828	4	ISM	ENSMUSG00000078546.9	ENSMUST00000190066.7	2221	5	-14	2270	-14	-2270	5prime_fragment	FALSE	canonical	2	13	junction_3	1.24721912892465	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGGTCTTCATTGCTTTTC	NA	False	NA	NA	False	AATAAA	-21	NA	22128921	22100820	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_-_22101066_22106291_22106340_22127029_22127178_22128534
transcript_38073.known	chr17	-	845	4	FSM	ENSMUSG00000078546.9	ENSMUST00000189719.2	845	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.55777733351102	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCCAGAGTGGCGAATATC	NA	False	NA	NA	False	NA	NA	NA	22128620	22110450	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_22110820_22111561_22111804_22127029_22127178_22128534
transcript_3808.known	chr1	+	4243	24	FSM	ENSMUSG00000036104.13	ENSMUST00000037649.6	4243	24	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	17.6995509005001	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTGGACTTGTGGCTTT	3029	False	NA	18	True	AATAAA	-15	NA	127796509	127871605	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_127796567_127796661_127796718_127801816_127801893_127816892_127817026_127818754_127818834_127829315_127829436_127831408_127831575_127837587_127837688_127843375_127843458_127845957_127846027_127847304_127847379_127852464_127852558_127853011_127853179_127855196_127855287_127855685_127855859_127858126_127858182_127858443_127858816_127862153_127862292_127865074_127865303_127865725_127865823_127865934_127866039_127866311_127866428_127866782_127866886_127870110
transcript_38080.known	chr17	-	3265	6	FSM	ENSMUSG00000071267.12	ENSMUST00000091879.12	3265	6	0	0	0	0	multi-exon	TRUE	canonical	3	43	junction_3	17.9041894538681	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGACTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	22181432	22145940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_22148471_22149346_22149474_22151973_22152095_22160706_22160832_22172868_22173035_22181236
transcript_38084.nnic	chr17	-	975	6	NNC	ENSMUSG00000071267.12	novel	3265	6	NA	NA	-44	-1048	at_least_one_novel_splicesite	TRUE	canonical	3	30	junction_5	22.8508205541945	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTCTACCATTGGTC	NA	False	NA	NA	False	TATAAA	-21	NA	22181489	22148214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_22148471_22149346_22149474_22151973_22152095_22160706_22160832_22172868_22172962_22181236
transcript_38088.nnic	chr17	-	972	6	NNC	ENSMUSG00000071267.12	novel	3265	6	NA	NA	-19	-1048	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_3	26.7776025812618	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTCTACCATTGGTC	NA	False	NA	NA	False	TATAAA	-21	NA	22181464	22148214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_22148471_22149346_22149474_22151973_22152095_22160757_22160832_22172868_22173035_22181236
transcript_3809.known	chr1	+	854	7	FSM	ENSMUSG00000036104.13	ENSMUST00000142662.2	854	7	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	21.5619263208709	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAGCAGTTCTTCCAGAG	3058	False	NA	NA	False	NA	NA	NA	127796538	127831770	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_127796567_127796661_127796718_127801816_127801893_127816892_127817026_127818754_127818834_127829315_127829436_127831408
transcript_38093.known	chr17	-	2481	3	FSM	ENSMUSG00000071267.12	ENSMUST00000126485.2	2481	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	18	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	22181445	22158725	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_22160832_22172868_22173035_22181236
transcript_38095.nnic	chr17	+	1647	5	NNC	ENSMUSG00000053347.16	novel	1338	6	NA	NA	-48	18397	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	9.44722181384559	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGATTGTATAAGATCTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	22181484	22231744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_22181801_22207011_22207083_22209759_22209887_22225286_22225364_22230688
transcript_38097.known	chr17	+	2741	4	FSM	ENSMUSG00000053347.16	ENSMUST00000055349.15	2741	4	0	0	0	0	multi-exon	TRUE	canonical	3	11	junction_3	5.73488351136175	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGACTTGTTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	22181532	22213347	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_22181801_22207011_22207083_22209759_22209887_22211072
transcript_38098.known	chr17	+	1598	3	FSM	ENSMUSG00000053347.16	ENSMUST00000153985.8	1598	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	3	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTCACTGGTTGATACTT	NA	False	NA	NA	False	AGTAAA	-15	NA	22181539	22211025	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_22181801_22207011_22207083_22209759
transcript_38102.nnic	chr17	-	709	3	NNC	ENSMUSG00000117234.2	novel	1756	2	NA	NA	-11533	-2386	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	2	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTTCTTCACTGTGTTTC	NA	False	NA	NA	False	AATAAA	-21	NA	22300402	22288630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_22288879_22297569_22297618_22299989
transcript_38104.known	chr17	-	2872	5	FSM	ENSMUSG00000063383.6	ENSMUST00000080249.6	2872	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	1.11803398874989	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACTTGGCTGTTTCCATT	NA	False	NA	NA	False	NA	NA	NA	22385171	22363339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_22365516_22366369_22366497_22369015_22369064_22382167_22382317_22384799
transcript_38108.nic	chr17	-	805	4	ISM	ENSMUSG00000063383.6	ENSMUST00000080249.6	2872	5	10	2911	10	-2911	5prime_fragment	FALSE	canonical	3	23	junction_2	0.816496580927726	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAAGTTCTTTACTGTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	22385161	22366250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_-_22366497_22369015_22369064_22382167_22382317_22384799
transcript_38109.known	chr17	-	4882	5	FSM	ENSMUSG00000096433.3	ENSMUST00000179996.3	4882	5	0	0	0	0	multi-exon	TRUE	canonical	2	8	junction_3	10.6066017177982	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACTATTGAGTCCTTCAG	NA	False	NA	NA	False	NA	NA	NA	22444597	22416245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_22420791_22421656_22421784_22424285_22424334_22442991_22443076_22444519
transcript_38119.known	chr17	-	3474	6	FSM	ENSMUSG00000117284.2	ENSMUST00000233465.2	3474	6	0	0	0	0	multi-exon	FALSE	canonical	2	21	junction_5	14.9853261559434	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCTGTTTGTATTTTAC	NA	False	NA	NA	False	NA	NA	NA	22533818	22504851	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_22507883_22508749_22508877_22511388_22511437_22528485_22528579_22532217_22532302_22533727
transcript_3812.known	chr1	-	4210	21	FSM	ENSMUSG00000036086.17	ENSMUST00000086614.12	4210	21	0	0	0	0	multi-exon	TRUE	canonical	3	115	junction_3	27.0654761642946	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAATTATGGGTACGT	NA	False	NA	-5	True	AATAAA	-22	NA	128030199	127881920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_127882803_127884273_127884406_127887446_127887838_127888495_127888607_127891497_127891641_127892799_127892902_127895614_127895707_127900683_127900882_127903875_127904282_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_127985718_127985738_128019579_128019748_128029989
transcript_38122.nnic	chr17	-	939	7	NNC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	-37	-1863	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_4	35.1946965701747	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTCTATCATTGGTC	NA	False	NA	0	True	TATAAA	-21	NA	22580418	22558832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_22559089_22559947_22560075_22562620_22562675_22574061_22574116_22577803_22577897_22578420_22578506_22580148
transcript_38124.nnic	chr17	-	1012	7	NNC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	-37	-1863	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_4	35.9463334554289	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTCTATCATTGGTC	NA	False	NA	0	True	TATAAA	-21	NA	22580418	22558832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_22559089_22559947_22560075_22562620_22562675_22574061_22574116_22577803_22577970_22578420_22578506_22580148
transcript_38125.nnic	chr17	-	2748	6	NNC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	-37	0	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_3	20.2484567313166	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGACTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	22580418	22556969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_22559089_22559947_22560075_22562620_22562675_22577803_22577897_22578420_22578506_22580148
transcript_38126.known	chr17	-	2784	6	FSM	ENSMUSG00000033972.10	ENSMUST00000115535.3	2784	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	24.8997991959775	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGACTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	22580381	22556969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_22559089_22559947_22560075_22562620_22562675_22577803_22577970_22578420_22578506_22580148
transcript_38127.nnic	chr17	-	885	6	NNC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	-37	-1863	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_3	20.2484567313166	154	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTCTATCATTGGTC	NA	False	NA	0	True	TATAAA	-21	NA	22580418	22558832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_22559089_22559947_22560075_22562620_22562675_22577803_22577897_22578420_22578506_22580148
transcript_38142.known	chr17	+	1947	4	FSM	ENSMUSG00000044501.18	ENSMUST00000072477.11	1947	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	13.4412301024373	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAGTGAATGTGATAAATT	NA	False	NA	NA	False	NA	NA	NA	22580435	22595237	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_22580689_22590971_22591070_22592623_22592751_22593768
transcript_38143.known	chr17	+	2860	4	FSM	ENSMUSG00000044501.18	ENSMUST00000121315.2	2860	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	15.7973274814304	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTCTAGTCATTTATCTT	NA	False	NA	25	True	AATAAA	-25	NA	22580502	22596262	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_22580689_22591016_22591070_22592623_22592751_22593768
transcript_38150.nnic	chr17	+	885	6	NIC	ENSMUSG00000071266.14	novel	2926	7	NA	NA	-15	-1157	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	29.3080193803676	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAAGTGTGTGTTCTATC	NA	False	NA	NA	False	TATAAA	-14	NA	22643187	22673662	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_22643411_22663148_22663273_22665777_22665875_22670077_22670134_22672432_22672560_22673404
transcript_38153.known	chr17	+	2935	7	FSM	ENSMUSG00000071266.14	ENSMUST00000088763.13	2935	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	23.5849528301415	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGGTTGTTTTAAGTCT	NA	False	NA	NA	False	NA	NA	NA	22643248	22675670	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_22643411_22647461_22647547_22663148_22663273_22665777_22665875_22670059_22670134_22672432_22672560_22673404
transcript_38161.nnic	chr17	+	3066	5	NNC	ENSMUSG00000117055.3	novel	1733	2	NA	NA	-13399	1034	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	3.26917420765551	25	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCATCAGTTTTTAGTGGA	NA	False	NA	7	True	NA	NA	NA	22893301	22910475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_22893506_22905293_22905368_22906456_22906513_22906703_22906831_22907870
transcript_38168.nnic	chr17	-	654	4	NNC	ENSMUSG00000117183.2	novel	2370	2	NA	NA	-23012	-2088	at_least_one_novel_splicesite	FALSE	canonical	3	75	junction_3	5.43650214343336	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAAACATGAGTCTGTCAA	NA	False	NA	NA	False	NA	NA	NA	22958930	22934850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_22935000_22935788_22935916_22937255_22937339_22958635
transcript_38177.known	chr17	-	5683	5	FSM	ENSMUSG00000059142.17	ENSMUST00000088696.13	5683	5	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_3	9.36416040016402	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTTTGCCTGTTTGATGA	NA	False	NA	NA	False	CATAAA	-35	NA	23086079	23066455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_23071741_23076223_23076351_23080479_23080536_23084220_23084311_23085954
transcript_3818.nic	chr1	-	2282	13	NIC	ENSMUSG00000036086.17	novel	1913	13	NA	NA	-238	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	50.1305933426774	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGATATGTGTGATTGGTG	NA	False	NA	NA	False	AATAAA	-15	NA	128030438	127914846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_127915137_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_127985718_127985738_128019579_128019748_128029989
transcript_38180.known	chr17	-	3762	2	FSM	ENSMUSG00000059142.17	ENSMUST00000127557.2	3762	2	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAAAAAAAAAACCCT	NA	False	NA	NA	False	NA	NA	NA	23086108	23080702	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_23084311_23085954
transcript_38181.known	chr17	-	759	6	FSM	ENSMUSG00000002617.15	ENSMUST00000135840.2	759	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	4.4988887516808	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAGAAGTCTTACAAATA	NA	False	NA	NA	False	NA	NA	NA	23412225	23396258	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_23396339_23397248_23397376_23401121_23401207_23410318_23410483_23410650_23410777_23412048
transcript_38182.known	chr17	-	4103	6	FSM	ENSMUSG00000002617.15	ENSMUST00000037057.14	4103	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	2.41660919471891	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATGTGTAAGTCCTTCC	NA	False	NA	NA	False	AATAAA	-42	NA	23412226	23392842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_23396339_23397248_23397376_23401121_23401207_23410318_23410410_23410650_23410777_23412048
transcript_38183.known	chr17	-	2686	6	FSM	ENSMUSG00000071256.5	ENSMUST00000095606.5	2686	6	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_4	6.49923072370877	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGACTCTTTAGCTGGC	6684	False	NA	NA	False	AATAAA	-20	NA	23783212	23775740	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_23777287_23778356_23778523_23778607_23778679_23778958_23779077_23780119_23780635_23782942
transcript_38185.nnic	chr17	+	957	4	Antisense	novelGene_ENSMUSG00000071256.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	4.10960933531265	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAGAACCAGTCACTAAAAG	NA	False	NA	NA	False	AAGAAA	-6	NA	23776356	23779514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr17_+_23776518_23777629_23777728_23778664_23778753_23778904
transcript_3819.known	chr1	-	1913	13	FSM	ENSMUSG00000036086.17	ENSMUST00000097597.7	1913	13	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_12	65.8438282773885	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGATATGTGTGATTGGTG	NA	False	NA	NA	False	AATAAA	-15	NA	128030784	127914846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_127915137_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_127985718_127985738_128019579_128019748_128030704
transcript_38193.known	chr17	-	2104	6	FSM	ENSMUSG00000062012.15	ENSMUST00000115516.11	2104	6	0	0	0	0	multi-exon	TRUE	canonical	3	79	junction_1	5.98665181883831	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTTGGCTCTGTGTGCTTG	4823	False	NA	0	True	ATTAAA	-21	NA	23805206	23794817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_23796086_23799085_23799207_23799744_23799837_23800030_23800245_23804411_23804549_23804934
transcript_38200.nic	chr17	-	2123	6	NIC	ENSMUSG00000062012.15	novel	2104	6	NA	NA	-40	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_3	27.6579102609	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTTGGCTCTGTGTGCTTG	10009	False	NA	0	True	ATTAAA	-21	NA	23805246	23794817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_23796086_23799085_23799207_23799744_23799837_23800051_23800245_23804411_23804549_23804934
transcript_38202.known	chr17	-	502	3	FSM	ENSMUSG00000062012.15	ENSMUST00000228298.2	502	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	39	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTTGGTGTTATAACTAT	4879	False	NA	NA	False	NA	NA	NA	23805150	23803763	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_23803913_23804411_23804549_23804934
transcript_38205.known	chr17	+	2609	7	FSM	ENSMUSG00000023902.19	ENSMUST00000120967.8	2609	7	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_6	80.8484521943508	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGATTTTTTTACTTTT	879	False	NA	35	True	AGTAAA	-19	NA	23819829	23829993	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_23819934_23824478_23824939_23826097_23826363_23826553_23826619_23827081_23827140_23828240_23828441_23828536
transcript_38206.known	chr17	+	2698	6	FSM	ENSMUSG00000023902.19	ENSMUST00000095595.9	2698	6	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	55.9335319821661	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTAGTCCTGATTTTTT	879	False	NA	28	True	AGTAAA	-12	NA	23819829	23829986	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_23819934_23824478_23824939_23826097_23826363_23826553_23826619_23827081_23827140_23828240
transcript_38209.nic	chr17	+	2467	5	NIC	ENSMUSG00000023902.19	novel	2698	6	NA	NA	-34	0	intron_retention	FALSE	canonical	3	18	junction_2	109.005733794145	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTAGTCCTGATTTTTT	845	False	NA	28	True	AGTAAA	-12	NA	23819795	23829986	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_23819934_23824478_23824939_23826553_23826619_23827081_23827140_23828240
transcript_38211.known	chr17	+	2368	4	FSM	ENSMUSG00000023902.19	ENSMUST00000115509.8	2368	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	114.030210422014	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTAGTCCTGATTTTTT	879	False	NA	28	True	AGTAAA	-12	NA	23819829	23829986	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_23819934_23824478_23824939_23827081_23827140_23828240
transcript_38212.known	chr17	+	1941	10	FSM	ENSMUSG00000043782.10	ENSMUST00000062967.10	1941	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	0.816496580927726	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTAAAATTTTATTTTGAC	NA	False	NA	NA	False	AATAAA	-16	NA	23879479	23887595	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_23879527_23880741_23881037_23884361_23884578_23884714_23884832_23884915_23885063_23885722_23885921_23886033_23886184_23886522_23886654_23886862_23886984_23887076
transcript_38216.nnic	chr17	+	941	4	NNC	ENSMUSG00000023904.11	novel	693	4	NA	NA	-73	0	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	146.645453011298	2802	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCTCAGCAGCCTTTGG	NA	False	NA	11	True	AATAAA	-19	NA	23892496	23894201	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_23892865_23892942_23893043_23893520_23893650_23893857
transcript_38217.known	chr17	+	597	4	FSM	ENSMUSG00000023904.11	ENSMUST00000179928.2	597	4	0	0	0	0	multi-exon	FALSE	canonical	2	24	junction_1	165.748805928328	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGAAAGGGAAAATGTTACC	NA	False	NA	-42	True	NA	NA	NA	23892600	23894148	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_23892678_23892942_23893043_23893520_23893650_23893857
transcript_38221.known	chr17	+	946	3	FSM	ENSMUSG00000023904.11	ENSMUST00000024697.5	946	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	200.5	2335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCTCAGCAGCCTTTGG	NA	False	NA	11	True	AATAAA	-19	NA	23892581	23894201	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_23893043_23893508_23893650_23893857
transcript_38222.known	chr17	-	1431	14	FSM	ENSMUSG00000041319.15	ENSMUST00000115490.9	1431	14	0	0	0	0	multi-exon	TRUE	canonical	3	69	junction_13	116.170706876108	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTTTGCATTTTATTCC	765	False	NA	-22	True	AATAAA	-13	NA	23892845	23887592	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889216_23889296_23889335_23889422_23889527_23889614_23889680_23889765_23889882_23892487_23892714_23892814
transcript_38223.known	chr17	-	1673	11	FSM	ENSMUSG00000041319.15	ENSMUST00000133849.2	1673	11	0	0	0	0	multi-exon	FALSE	canonical	3	423	junction_8	40.7603974465412	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTTGCATTTTATTCCC	794	False	NA	-21	True	AATAAA	-14	NA	23892816	23887591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889527_23889614_23889680_23889765_23889882_23892487
transcript_38224.known	chr17	-	635	5	FSM	ENSMUSG00000023905.16	ENSMUST00000233428.2	635	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	37.1306813834597	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTGCCCTATCTCTGGGT	NA	False	NA	NA	False	NA	NA	NA	23896394	23894796	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_23895021_23895112_23895248_23895492_23895598_23896094_23896172_23896300
transcript_38228.known	chr17	-	984	4	FSM	ENSMUSG00000023905.16	ENSMUST00000024698.10	984	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	6.34209919681348	694	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATGGCCTGATCCCTAAC	NA	False	NA	-1	True	AATAAA	-18	NA	23896442	23894418	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_23895021_23895112_23895248_23895492_23895598_23896300
transcript_38229.known	chr17	+	1622	3	FSM	ENSMUSG00000023906.4	ENSMUST00000024699.4	1622	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	4	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTGATGTCTCTTGGT	NA	False	NA	9	True	AATAAA	-23	NA	23898222	23901420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_23898382_23898731_23898796_23900021
transcript_38230.known	chr17	+	1431	2	FSM	ENSMUSG00000023906.4	ENSMUST00000232719.2	1431	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATGTGTCTGATGTCTCT	NA	False	NA	5	True	AATAAA	-19	NA	23898345	23901416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_23898382_23900021
transcript_38231.known	chr17	+	1078	2	FSM	ENSMUSG00000023906.4	ENSMUST00000233364.2	1078	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGACCTCCAGCTCCAGTTT	NA	False	NA	NA	False	NA	NA	NA	23898632	23900936	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_23898796_23900021
transcript_38232.known	chr17	-	1443	1	FSM	ENSMUSG00000066720.8	ENSMUST00000085989.8	1443	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCCTCTGGTCTGTGAAA	NA	False	NA	NA	False	AATAAA	-17	NA	23903000	23901557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_23901600_23903000
transcript_38234.known	chr17	-	461	6	FSM	ENSMUSG00000043747.13	ENSMUST00000177300.8	461	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.8	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTGCCTCTGCATGCAGG	NA	False	NA	NA	False	AATAAA	-16	NA	23925313	23924031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_23924210_23924502_23924545_23924766_23924845_23924971_23925032_23925121_23925152_23925240
transcript_38239.nnic	chr17	+	1590	8	NNC	ENSMUSG00000023908.9	novel	2040	8	NA	NA	40	0	at_least_one_novel_splicesite	FALSE	canonical	3	98	junction_3	138.628412436607	131	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTCTTCTTGTCCCTTTA	2990	False	NA	32	True	AAAAAG	-43	NA	23945361	23955707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_23945616_23951310_23951799_23952796_23952890_23953939_23954047_23954173_23954347_23954536_23954695_23955297_23955376_23955468
transcript_38241.known	chr17	+	2040	8	FSM	ENSMUSG00000023908.9	ENSMUST00000024701.9	2040	8	0	0	0	0	multi-exon	TRUE	canonical	3	384	junction_2	52.6761379583211	626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATAGCTCTTCTTGTCCCT	2938	False	NA	29	True	AATAAA	-43	NA	23945309	23955704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_23945616_23951310_23951799_23952796_23953291_23953939_23954047_23954173_23954347_23954536_23954695_23955297_23955376_23955468
transcript_38248.known	chr17	+	2902	7	FSM	ENSMUSG00000023908.9	ENSMUST00000233954.2	2902	7	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_2	45.7484061653154	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCATAGCTCTTCTTGTC	3071	False	NA	26	True	AATAAA	-40	NA	23945442	23955701	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_23945616_23951310_23953291_23953939_23954047_23954173_23954347_23954536_23954695_23955297_23955376_23955468
transcript_38254.known	chr17	-	2575	3	FSM	ENSMUSG00000023909.5	ENSMUST00000024702.5	2575	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	3.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCGCCTGACCACATTCAT	NA	False	NA	NA	False	AATAAA	-21	NA	23959372	23955159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_23956974_23957113_23957336_23958833
transcript_38255.known	chr17	-	422	3	FSM	ENSMUSG00000023909.5	ENSMUST00000233776.2	422	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	16	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGAGCCTTTGGTTGGCA	NA	False	NA	NA	False	NA	NA	NA	23959841	23956842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_23956974_23957113_23957336_23959772
transcript_38258.nic	chr17	-	3339	8	NIC	ENSMUSG00000040097.17	novel	2943	7	NA	NA	21	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_1	24.7831410768016	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCTGTGTGTCAGTAATA	7546	False	NA	1	True	AATAAA	-25	NA	23990555	23971766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_23972838_23974627_23974919_23975520_23975785_23979177_23979442_23979580_23980091_23981139_23981569_23981949_23982293_23990388
transcript_38259.known	chr17	-	2443	7	FSM	ENSMUSG00000040097.17	ENSMUST00000086325.13	2443	7	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_6	22.386131619574	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAATGTTGTGTGTTTGA	7605	False	NA	NA	False	AATATA	-20	NA	23990496	23974393	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_23974919_23975520_23975785_23979177_23979442_23979580_23980091_23981139_23981569_23981949_23982293_23990388
transcript_38267.known	chr17	-	694	3	FSM	ENSMUSG00000023911.13	ENSMUST00000024704.10	694	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0.5	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTAGTTTTTGTTGTTGT	NA	False	NA	0	True	AATAAA	-26	NA	24005055	23995889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_23996074_23998601_23999031_24004974
transcript_38268.nnic	chr17	-	670	3	NNC	ENSMUSG00000023911.13	novel	694	3	NA	NA	-152	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	1	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTAGTTTTTGTTGTTGT	NA	False	NA	0	True	AATAAA	-26	NA	24005207	23995889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_23996074_23998601_23999031_24005150
transcript_3827.known	chr1	-	515	3	FSM	ENSMUSG00000036086.17	ENSMUST00000124876.2	515	3	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_2	2.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTAATATCCATTTCCTCT	NA	False	NA	NA	False	AAAACA	-13	NA	128030191	127985592	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_127985738_128019579_128019748_128029989
transcript_38286.known	chr17	-	414	4	FSM	ENSMUSG00000055839.7	ENSMUST00000233519.2	414	4	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_3	5439.43761390418	1614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGATTGACTTTTCTGTTC	NA	False	NA	-36	True	AATAAA	-18	NA	24048088	24043782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24043954_24046441_24046548_24047817_24047923_24048056
transcript_38291.known	chr17	-	442	3	FSM	ENSMUSG00000055839.7	ENSMUST00000233483.2	442	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	5701	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGACTTTTCTGTTCCCTCT	NA	False	NA	-31	True	AATAAA	-23	NA	24047777	24043777	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24043954_24046441_24046548_24047617
transcript_38298.known	chr17	-	537	4	FSM	ENSMUSG00000055839.7	ENSMUST00000069579.7	537	4	0	0	0	0	multi-exon	FALSE	canonical	3	7596	junction_3	2024.23060829431	35835	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATTTCTCATTTTTATTT	NA	False	NA	-3	True	AGTAAA	-18	NA	24048110	24043711	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24043954_24046441_24046548_24047817_24047953_24048056
transcript_38299.known	chr17	+	8564	14	FSM	ENSMUSG00000039218.18	ENSMUST00000088621.11	8564	14	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	53.0972090553492	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTCTGTAGTCTTTACTT	NA	False	NA	16	True	AATAAA	-18	NA	24022194	24043715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24022373_24027039_24027148_24027327_24027493_24028942_24029021_24029386_24029450_24029712_24029746_24030004_24030056_24030612_24030706_24031401_24031595_24034095_24040665_24041386_24041675_24042764_24042879_24042989_24043095_24043189
transcript_38300.known	chr17	+	678	5	FSM	ENSMUSG00000039218.18	ENSMUST00000233636.2	678	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	99.1387916004628	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAAAGATAGAGGACGGT	NA	False	NA	45	True	NA	NA	NA	24022207	24029002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24022282_24025905_24026177_24027039_24027148_24027327_24027493_24028942
transcript_38301.known	chr17	-	581	3	FSM	ENSMUSG00000055839.7	ENSMUST00000232702.2	581	3	0	0	0	0	multi-exon	FALSE	canonical	3	11428	junction_1	404.5	4412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATTACTGCATTTCTCATT	NA	False	NA	-10	True	AGTAAA	-11	NA	24048057	24043718	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24043954_24046441_24046548_24047817
transcript_38302.known	chr17	-	578	5	FSM	ENSMUSG00000055839.7	ENSMUST00000233593.2	578	5	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_2	5034.57517448096	618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCATTTCTCATTTTTAT	NA	False	NA	-5	True	AGTAAA	-16	NA	24048072	24043713	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24043954_24045559_24045641_24046441_24046548_24047817_24047953_24048056
transcript_38303.known	chr17	-	366	3	FSM	ENSMUSG00000055839.7	ENSMUST00000233857.2	366	3	0	0	0	0	multi-exon	FALSE	canonical	3	420	junction_2	5504	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGACTTTTCTGTTCCCTC	NA	False	NA	-32	True	AATAAA	-22	NA	24047805	24043778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24043954_24046441_24046548_24047720
transcript_38304.known	chr17	-	512	3	FSM	ENSMUSG00000055839.7	ENSMUST00000233796.2	512	3	0	0	0	0	multi-exon	FALSE	canonical	1	11	junction_2	5708.5	467	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGACTTTTCTGTTCCCTCT	NA	False	NA	-31	True	AATAAA	-23	NA	24047785	24043777	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24043954_24046441_24046548_24047555
transcript_38305.known	chr17	+	950	5	FSM	ENSMUSG00000039218.18	ENSMUST00000186961.7	950	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	115.079048918559	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTCAGGAGAAAGGCCTG	NA	False	NA	NA	False	NA	NA	NA	24009635	24027492	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24009920_24011363_24011486_24025905_24026177_24027039_24027148_24027327
transcript_38307.known	chr17	-	1128	7	FSM	ENSMUSG00000024114.16	ENSMUST00000024926.14	1128	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	10.7651701746368	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGCACTCTGCAGCATTA	NA	False	NA	NA	False	AATAAA	-19	NA	24063146	24055758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24056123_24056464_24056623_24061218_24061500_24062415_24062585_24062812_24062846_24062930_24062958_24063050
transcript_38317.known	chr17	-	1799	5	FSM	ENSMUSG00000024114.16	ENSMUST00000151797.3	1799	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	4.71036092035419	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTGGATGCCTTTAA	NA	False	NA	-6	True	NA	NA	NA	24063146	24060025	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24061500_24062415_24062585_24062812_24062846_24062930_24062958_24063050
transcript_3833.known	chr1	+	414	1	FSM	ENSMUSG00000058603.11	ENSMUST00000121497.2	414	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	147865	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCCACACGCCCGAAGCAA	NA	False	NA	NA	False	NA	NA	NA	127966305	127966719	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_127966300_127966700
transcript_38331.known	chr17	-	903	3	FSM	ENSMUSG00000024114.16	ENSMUST00000141788.2	903	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	4.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGAGATTAGCAACGCAGG	NA	False	NA	NA	False	NA	NA	NA	24063123	24061219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24061500_24062415_24062846_24062930
transcript_38337.known	chr17	+	1002	4	FSM	ENSMUSG00000024128.14	ENSMUST00000183252.8	1002	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.816496580927726	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGAGTGGTCCTCACCA	8712	False	NA	NA	False	AATAAA	-18	NA	24160806	24164581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24160981_24161353_24161475_24161585_24161692_24163980
transcript_38339.known	chr17	+	882	4	FSM	ENSMUSG00000024128.14	ENSMUST00000183155.8	882	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.816496580927726	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATGTGAGCCTGAGTGGT	8956	False	NA	NA	False	AATAAA	-10	NA	24161050	24164573	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24161113_24161353_24161475_24161585_24161692_24163980
transcript_38341.known	chr17	+	1253	6	FSM	ENSMUSG00000050762.6	ENSMUST00000059482.6	1253	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	4.88262224629348	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAGAAAAAAAA	4531	False	NA	NA	False	NA	NA	NA	24257117	24264928	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24257336_24261027_24261055_24261775_24261939_24263233_24263506_24263832_24264003_24264525
transcript_38344.known	chr17	-	2443	6	FSM	ENSMUSG00000016946.7	ENSMUST00000017090.6	2443	6	0	0	0	0	multi-exon	FALSE	canonical	3	983	junction_3	66.4090355298133	201	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAGCAACTGTGAATATC	NA	False	NA	-22	True	AATAAA	-20	NA	24292459	24266707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24268419_24274898_24275025_24276714_24276811_24278195_24278288_24279216_24279326_24292150
transcript_38347.known	chr17	-	7161	14	FSM	ENSMUSG00000024122.17	ENSMUST00000102927.10	7161	14	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_7	13.9033008723802	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTTTGCCATGGAGCCT	NA	False	NA	-3	True	AATAAA	-18	NA	24360569	24292653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24298117_24298465_24298619_24299351_24299410_24306977_24307196_24310394_24310569_24312164_24312262_24312513_24312583_24317067_24317144_24319784_24319883_24320575_24320721_24325800_24325939_24326202_24326246_24329821_24330092_24360410
transcript_3835.known	chr1	+	2438	12	FSM	ENSMUSG00000056211.14	ENSMUST00000191016.7	2438	12	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_9	26.662258588834	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAGAGAGTGCAAGAGTC	NA	False	NA	NA	False	AATAAA	-16	NA	128031037	128110868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_128031221_128079480_128079690_128080925_128081137_128095629_128095745_128096715_128096795_128102685_128102746_128102828_128102970_128106619_128106729_128106823_128106920_128109453_128109492_128109574_128109626_128109722
transcript_38350.nnic	chr17	-	1379	10	NIC	ENSMUSG00000036820.13	novel	1496	11	NA	NA	-20	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_9	102.741435015946	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTGCGTCATGCTTTG	NA	False	NA	-12	True	GATAAA	-20	NA	24382760	24374806	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_24375060_24375544_24375647_24376501_24376571_24376713_24376822_24376891_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24381949_24382090_24382555
transcript_38353.known	chr17	-	1496	11	FSM	ENSMUSG00000036820.13	ENSMUST00000040735.12	1496	11	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_8	20.5156038175824	1074	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTGCGTCATGCTTTG	NA	False	NA	-12	True	GATAAA	-20	NA	24382740	24374806	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24375060_24375544_24375647_24376501_24376571_24376713_24376822_24376891_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24381949_24382090_24382169_24382307_24382555
transcript_38354.known	chr17	-	1526	12	FSM	ENSMUSG00000036820.13	ENSMUST00000129523.3	1526	12	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_9	128.890369200834	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTGCGTCATGCTTTG	NA	False	NA	-12	True	GATAAA	-20	NA	24382638	24374806	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24375060_24375544_24375647_24376501_24376571_24376713_24376822_24376891_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24380555_24380688_24381949_24382090_24382169_24382307_24382555
transcript_38355.known	chr17	-	1225	2	FSM	ENSMUSG00000036820.13	ENSMUST00000131766.2	1225	2	0	0	0	0	multi-exon	FALSE	canonical	3	360	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTCGAATGGATTTTCTC	NA	False	NA	NA	False	AGTAAA	-16	NA	24382667	24381193	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24382307_24382555
transcript_38367.known	chr17	-	607	3	FSM	ENSMUSG00000024121.14	ENSMUST00000156061.2	607	3	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	1543.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTCGGAGATGCTGGTGTT	NA	False	NA	NA	False	GGGGCT	-33	NA	24388040	24383511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24383583_24383672_24383857_24387688
transcript_38370.known	chr17	-	1183	3	FSM	ENSMUSG00000024121.14	ENSMUST00000024932.12	1183	3	0	0	0	0	multi-exon	FALSE	canonical	3	1416	junction_2	838.5	20886	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGGCTTGTGTTCTGGCGC	NA	False	NA	NA	False	AATAAA	-15	NA	24388435	24382839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24383583_24383672_24383857_24388179
transcript_38371.known	chr17	-	796	4	FSM	ENSMUSG00000024121.14	ENSMUST00000098862.9	796	4	0	0	0	0	multi-exon	FALSE	canonical	2	51	junction_3	1244.06671846811	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTAGAGTGCTCCTGTGT	NA	False	NA	NA	False	NA	NA	NA	24388651	24383126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24383583_24383672_24383857_24388179_24388261_24388576
transcript_38373.known	chr17	-	2166	10	FSM	ENSMUSG00000024118.15	ENSMUST00000024930.8	2166	10	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_7	23.2426810463471	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCGGGCAGTGGTGGTGC	3337	False	NA	NA	False	NA	NA	NA	24439764	24434027	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24434980_24435223_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24438181_24438704_24439108_24439225_24439285_24439490_24439590_24439664
transcript_38379.known	chr17	-	2160	9	FSM	ENSMUSG00000024118.15	ENSMUST00000137648.8	2160	9	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_8	21.2485293608758	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATGGCTTGACGGTTAA	3276	False	NA	0	True	AATAAA	-21	NA	24439825	24434212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24434980_24435223_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24438181_24438704_24439285_24439490_24439590_24439664
transcript_38383.nnic	chr17	-	1607	9	NIC	ENSMUSG00000024118.15	novel	2160	9	NA	NA	-29	0	intron_retention	FALSE	canonical	3	24	junction_6	68.678599286823	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATGGCTTGACGGTTAA	3308	False	NA	0	True	AATAAA	-21	NA	24439793	24434212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_24434980_24435223_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24438181_24439225_24439285_24439490_24439590_24439664
transcript_38386.nnic	chr17	-	1300	9	NIC	ENSMUSG00000024118.15	novel	2166	10	NA	NA	-29	0	intron_retention	FALSE	canonical	3	24	junction_6	68.678599286823	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTTTGGTTTCTTGTTTC	3308	False	NA	-7	True	TTTAAA	-28	NA	24439793	24434519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_24434980_24435223_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24438181_24439225_24439285_24439490_24439590_24439664
transcript_38392.nnic	chr17	-	422	3	NNC	ENSMUSG00000036473.17	novel	434	2	NA	NA	-28	2755	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	14.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTATCATCGGGCATGGT	NA	False	NA	-4	True	NA	NA	NA	24424564	24405884	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_24406080_24408917_24409028_24424447
transcript_38393.known	chr17	-	1569	9	FSM	ENSMUSG00000024118.15	ENSMUST00000124557.3	1569	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_8	69.7603038984206	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTTTGGTTTCTTGTTTC	3512	False	NA	-7	True	TTTAAA	-28	NA	24439589	24434519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24434980_24435223_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24438181_24438704_24439108_24439225_24439285_24439495
transcript_38394.nic	chr17	-	3142	17	NIC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	11	-1032	combination_of_known_junctions	FALSE	canonical	3	43	junction_16	200.408917902872	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTACTGTGCTTCAACTGA	8748	False	NA	-4	True	AATAAA	-19	NA	24470310	24442203	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470154
transcript_38397.known	chr17	-	1721	12	FSM	ENSMUSG00000072082.8	ENSMUST00000234381.2	1721	12	0	0	0	0	multi-exon	FALSE	canonical	3	665	junction_11	78.5254604181618	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAAAGAAAGAAA	8737	False	NA	NA	False	NA	NA	NA	24470321	24449999	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470268
transcript_38398.known	chr17	-	1045	9	FSM	ENSMUSG00000072082.8	ENSMUST00000234916.2	1045	9	0	0	0	0	multi-exon	FALSE	canonical	3	665	junction_8	73.9365226055432	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCTGTTTAGTAATTTGA	8766	False	NA	NA	False	NA	NA	NA	24470292	24455946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470268
transcript_3840.known	chr1	+	4113	13	FSM	ENSMUSG00000026353.10	ENSMUST00000027592.6	4113	13	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_2	38.8918550456119	538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCATTTTGCTCTTTCC	94	False	NA	NA	False	NA	NA	NA	128171898	128207115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_128172290_128179939_128180043_128183169_128183199_128183855_128183975_128186568_128186741_128187180_128187275_128188570_128188626_128190529_128190695_128194026_128194152_128197605_128197709_128200557_128200690_128202538_128202742_128204693
transcript_38400.nic	chr17	+	1135	6	ISM	ENSMUSG00000024130.17	ENSMUST00000234109.2	1703	7	-47	1169	0	-1169	5prime_fragment	FALSE	canonical	3	19	junction_1	3.46410161513775	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTATGATAGTCAGTCCC	NA	False	NA	NA	False	AATAAA	-21	NA	24570996	24585315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_24571226_24576892_24576966_24579861_24580064_24583450_24583561_24583666_24583932_24585059
transcript_38401.nic	chr17	+	1100	5	ISM	ENSMUSG00000024130.17	ENSMUST00000136295.2	3139	11	-117	17003	35	-1169	5prime_fragment	FALSE	canonical	3	9	junction_1	7.72576857018122	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTATGATAGTCAGTCCC	NA	False	NA	NA	False	AATAAA	-21	NA	24570958	24585315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_24571226_24579861_24580064_24583450_24583561_24583666_24583932_24585059
transcript_38402.known	chr17	-	1256	5	FSM	ENSMUSG00000073437.11	ENSMUST00000181259.8	1256	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.11803398874989	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACTGGGAGGGAGAGGA	7232	False	NA	NA	False	ATTAAA	-14	NA	24633487	24628454	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24629146_24629231_24629328_24630898_24631058_24631440_24631549_24633285
transcript_38403.nnic	chr17	+	1007	4	NNC	ENSMUSG00000024130.17	novel	1703	7	NA	NA	8	825	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	8.99382504215469	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACCACAGGTCTTACCAAA	NA	False	NA	NA	False	AATAAA	-35	NA	24571027	24580778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_24571226_24576892_24576966_24579861_24580064_24580244
transcript_38407.known	chr17	+	1920	9	FSM	ENSMUSG00000034681.18	ENSMUST00000163717.2	1920	9	0	0	0	0	multi-exon	FALSE	canonical	3	410	junction_1	446.592917963328	980	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGAGTGCTGGTTTTAC	913	False	NA	NA	False	AATAAA	-18	NA	24633648	24644869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24633709_24634014_24634137_24637011_24637193_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
transcript_38412.known	chr17	+	1769	8	FSM	ENSMUSG00000034681.18	ENSMUST00000234977.2	1769	8	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_2	570.995335768505	469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGGTTTTACTGTCTG	889	False	NA	NA	False	AATAAA	-24	NA	24633624	24644875	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24633709_24634014_24634137_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
transcript_38415.known	chr17	+	1646	7	FSM	ENSMUSG00000034681.18	ENSMUST00000115371.9	1646	7	0	0	0	0	multi-exon	FALSE	canonical	3	629	junction_1	362.779738807019	2026	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGAGTGCTGGTTTTAC	884	False	NA	NA	False	AATAAA	-18	NA	24633619	24644869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24633709_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
transcript_38423.known	chr17	+	2106	1	FSM	ENSMUSG00000034681.18	ENSMUST00000234342.2	2106	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GCAAAAAAAAAAAAAAAAAT	803	False	NA	NA	False	NA	NA	NA	24633538	24635644	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24633500_24635600
transcript_38424.known	chr17	+	1816	8	FSM	ENSMUSG00000034681.18	ENSMUST00000088512.13	1816	8	0	0	0	0	multi-exon	FALSE	canonical	3	697	junction_1	319.314188567323	1619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGGTTTTACTGTCTG	901	False	NA	NA	False	AATAAA	-24	NA	24633636	24644875	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24633709_24637011_24637193_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
transcript_38425.known	chr17	+	1839	2	FSM	ENSMUSG00000034681.18	ENSMUST00000234729.2	1839	2	0	0	0	0	multi-exon	FALSE	canonical	3	410	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAAAAAAAAAAAGAC	932	False	NA	NA	False	NA	NA	NA	24633667	24635812	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24633709_24634014
transcript_38436.known	chr17	+	1086	7	FSM	ENSMUSG00000024132.7	ENSMUST00000024946.7	1086	7	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	202.517008887868	562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCTTAGCTCTTGTGTTC	4882	False	NA	11	True	TATAAA	-24	NA	24645656	24658294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24645717_24645826_24645914_24652115_24652235_24655151_24655299_24656193_24656316_24656405_24656585_24657922
transcript_38437.known	chr17	+	1108	6	FSM	ENSMUSG00000024132.7	ENSMUST00000234023.2	1108	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	223.824931587167	548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGTCCTGTTTCAGGAA	5190	False	NA	39	True	NA	NA	NA	24645964	24658322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24646097_24652106_24652235_24655151_24655299_24656193_24656316_24656405_24656585_24657922
transcript_38438.known	chr17	+	633	4	FSM	ENSMUSG00000024132.7	ENSMUST00000234150.2	633	4	0	0	0	0	multi-exon	FALSE	canonical	3	503	junction_1	28.5773803324704	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAATACAAAGGACTGCACC	4903	False	NA	NA	False	NA	NA	NA	24645677	24656315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24645914_24652106_24652235_24655151_24655299_24656193
transcript_38439.known	chr17	-	2574	14	FSM	ENSMUSG00000024137.10	ENSMUST00000056032.9	2574	14	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_6	25.0001183429152	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGTTGTGATTGGGTAG	NA	False	NA	-1	True	AATAAA	-16	NA	24674285	24662752	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24663312_24663387_24663451_24663520_24663664_24663749_24663949_24664095_24664314_24664419_24664526_24664919_24665130_24665487_24665655_24665755_24665909_24666063_24666185_24666271_24666466_24668595_24668708_24670379_24670532_24674108
transcript_38441.nic	chr17	-	2607	14	NIC	ENSMUSG00000024137.10	novel	2552	14	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	73	junction_6	16.2546306556464	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGTTTGTTGTGATTGGG	NA	False	NA	-4	True	AATAAA	-13	NA	24674318	24662755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_24663312_24663387_24663451_24663520_24663664_24663749_24663949_24664095_24664314_24664419_24664529_24664919_24665130_24665487_24665655_24665755_24665909_24666063_24666185_24666271_24666466_24668595_24668708_24670379_24670532_24674108
transcript_38442.known	chr17	-	2642	13	FSM	ENSMUSG00000024137.10	ENSMUST00000226941.2	2642	13	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_5	15.7797338380595	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGAGAGAGAGAGAGAGAG	NA	False	NA	-93	True	NA	NA	NA	24674366	24662844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24663451_24663520_24663664_24663749_24663949_24664095_24664314_24664419_24664529_24664919_24665130_24665487_24665655_24665755_24665909_24666063_24666185_24666271_24666466_24668595_24668708_24670379_24670532_24674108
transcript_38448.known	chr17	-	1377	2	FSM	ENSMUSG00000024137.10	ENSMUST00000226743.2	1377	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAT	7412	False	NA	NA	False	NA	NA	NA	24689165	24684431	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24685707_24689063
transcript_38450.known	chr17	+	2627	2	FSM	ENSMUSG00000043445.8	ENSMUST00000053024.8	2627	2	0	0	0	0	multi-exon	FALSE	canonical	3	1130	junction_1	0	495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGCCTTCCTCTAATTT	NA	False	NA	25	True	ATTAAA	-22	NA	24689365	24692084	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24690124_24690215
transcript_38451.known	chr17	+	2428	1	FSM	ENSMUSG00000043445.8	ENSMUST00000234216.2	2428	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTGAAGCTGTTCCCGG	NA	False	NA	NA	False	AATAAA	-13	NA	24689408	24691836	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24689400_24691800
transcript_38453.known	chr17	-	3340	9	FSM	ENSMUSG00000024142.16	ENSMUST00000179163.3	3340	9	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_8	23.0813777751676	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGAGGCCGATTGCTTTC	9587	False	NA	0	True	AATAAA	-17	NA	24698052	24692524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24694926_24695019_24695184_24695298_24695424_24696154_24696308_24696403_24696480_24696836_24697000_24697084_24697137_24697293_24697433_24697985
transcript_38454.known	chr17	-	1574	9	FSM	ENSMUSG00000024142.16	ENSMUST00000234335.2	1574	9	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_8	26.1951808545007	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGATGTTGCTCGGGAAGC	9627	False	NA	NA	False	AATAAA	-14	NA	24698012	24694275	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24694926_24695019_24695184_24695298_24695424_24696154_24696308_24696403_24696480_24696836_24697000_24697084_24697137_24697293_24697458_24697985
transcript_38464.known	chr17	-	3003	21	FSM	ENSMUSG00000052752.16	ENSMUST00000176652.8	3003	21	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_18	53.1587010751768	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCATGTTCAGATGAGGA	NA	False	NA	NA	False	NA	NA	NA	24746912	24727535	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735571_24737715_24737774_24738104_24738221_24746739
transcript_38466.known	chr17	-	2687	21	FSM	ENSMUSG00000052752.16	ENSMUST00000176086.8	2687	21	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_19	106.585693223809	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24746864	24727823	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735574_24737715_24737774_24738087_24738221_24746739
transcript_38470.known	chr17	-	2667	21	FSM	ENSMUSG00000052752.16	ENSMUST00000176668.8	2667	21	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_17	106.150647666418	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24746824	24727823	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733841_24735478_24735574_24737715_24737774_24738104_24738221_24746739
transcript_38474.known	chr17	-	2503	20	FSM	ENSMUSG00000052752.16	ENSMUST00000176353.8	2503	20	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_16	139.813924621282	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24746820	24727823	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731929_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24735478_24735574_24737715_24737774_24738104_24738221_24746739
transcript_38484.known	chr17	-	1575	9	FSM	ENSMUSG00000079657.11	ENSMUST00000035797.16	1575	9	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_8	7.78520230951001	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGGAAAACCACCTCCT	NA	False	NA	-2	True	AATAAA	-23	NA	24752862	24748027	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24748618_24748714_24748792_24748887_24748945_24749028_24749095_24749364_24749418_24749616_24749684_24749759_24749802_24751185_24751297_24752350
transcript_38486.nnic	chr17	-	1379	8	NIC	ENSMUSG00000079657.11	novel	1575	9	NA	NA	-53	1	combination_of_known_splicesites	FALSE	canonical	3	4	junction_1	28.0393309769091	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTGTCATCTGTGGAAA	NA	False	NA	-12	True	AATAAA	-13	NA	24752753	24748037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_24748618_24748887_24748945_24749028_24749095_24749364_24749418_24749616_24749684_24749759_24749802_24751185_24751297_24752350
transcript_38489.known	chr17	-	1658	8	FSM	ENSMUSG00000079657.11	ENSMUST00000177441.2	1658	8	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_7	7.80894306783797	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGTGTCATCTGTGGAA	NA	False	NA	-13	True	AATAAA	-12	NA	24752686	24748038	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24748618_24748714_24748792_24748887_24748945_24749028_24749418_24749616_24749684_24749759_24749802_24751185_24751297_24752350
transcript_38498.known	chr17	+	298	2	FSM	ENSMUSG00000093565.2	ENSMUST00000176921.2	298	2	0	0	0	0	multi-exon	TRUE	canonical	3	77	junction_1	0	612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTTTCAGACGTTGTG	4764	False	NA	14	True	AATAAA	-17	NA	24747221	24747718	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24747411_24747609
transcript_38499.known	chr17	-	693	2	FSM	ENSMUSG00000052752.16	ENSMUST00000176361.2	693	2	0	0	0	0	multi-exon	FALSE	canonical	3	406	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCGAAAACTTGCCCACCCA	NA	False	NA	NA	False	NA	NA	NA	24746758	24737546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24738221_24746739
transcript_38500.known	chr17	+	477	1	FSM	ENSMUSG00000093565.2	ENSMUST00000176215.2	477	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	260	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGGTTTCAGACGTTGT	4783	False	NA	13	True	AATAAA	-16	NA	24747240	24747717	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24747200_24747700
transcript_38501.known	chr17	-	2504	20	FSM	ENSMUSG00000052752.16	ENSMUST00000088464.12	2504	20	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_18	54.3646251286069	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24738182	24727823	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735571_24737715_24737774_24738104
transcript_38502.known	chr17	-	382	4	FSM	ENSMUSG00000052752.16	ENSMUST00000176092.2	382	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	196.022107596737	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGCTGTGGGGCAGCGTCT	NA	False	NA	NA	False	NA	NA	NA	24746825	24737345	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24737468_24737715_24737774_24738104_24738221_24746739
transcript_38510.known	chr17	+	893	6	FSM	ENSMUSG00000041429.4	ENSMUST00000234635.2	893	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	84.8042451767599	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGGGTGGTAAACTTTGGG	945	False	NA	-47	True	NA	NA	NA	24851692	24857753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24851738_24852900_24853140_24853698_24853870_24854561_24854722_24857397_24857504_24857581
transcript_38512.known	chr17	+	2084	6	FSM	ENSMUSG00000041429.4	ENSMUST00000234308.2	2084	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	84.8042451767599	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTCTTGGCCCGTTGGCT	906	False	NA	10	True	AATAAA	-22	NA	24851653	24857810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24852833_24852900_24853140_24853698_24853870_24854561_24854722_24857397_24857504_24857581
transcript_38521.known	chr17	+	1079	6	FSM	ENSMUSG00000041429.4	ENSMUST00000047611.4	1079	6	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_2	26.3772629360971	1909	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCTTGGCCCGTTGGCTT	908	False	NA	11	True	AATAAA	-23	NA	24851655	24857811	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24851829_24852900_24853140_24853698_24853870_24854561_24854722_24857397_24857504_24857581
transcript_38522.known	chr17	-	2136	7	FSM	ENSMUSG00000002504.16	ENSMUST00000002572.6	2136	7	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_5	35.3478743663919	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGCGCCTGTGTGTTTT	5141	False	NA	-6	True	ATTAAA	-17	NA	24869301	24858259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24859364_24859568_24859632_24860682_24860727_24860792_24860947_24861164_24861345_24866500_24866702_24868911
transcript_38523.known	chr17	-	2035	6	FSM	ENSMUSG00000002504.16	ENSMUST00000234557.2	2035	6	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_1	24.9671784549236	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGCGCCTGTGTGTTTT	5179	False	NA	-6	True	ATTAAA	-17	NA	24869263	24858259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24859364_24860682_24860727_24860792_24860947_24861164_24861345_24866500_24866702_24868911
transcript_38524.known	chr17	-	1717	6	FSM	ENSMUSG00000002504.16	ENSMUST00000019684.13	1717	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	50.6501727539008	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGCGCCTGTGTGTTTT	NA	False	NA	-6	True	ATTAAA	-17	NA	24863964	24858259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24859364_24859568_24859632_24860682_24860727_24860792_24860947_24861164_24861345_24863792
transcript_38526.known	chr17	-	638	2	FSM	ENSMUSG00000071230.8	ENSMUST00000095544.6	638	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGCGTGTGACCCTTTTT	8957	False	NA	NA	False	AATAAA	-20	NA	24877431	24876303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24876479_24876968
transcript_38527.known	chr17	-	1965	4	FSM	ENSMUSG00000007021.6	ENSMUST00000007236.5	1965	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	5.18544972870135	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAAGGTCCCCTGGACTTA	NA	False	NA	-1	True	AATAAA	-23	NA	24908929	24904065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24905415_24905492_24905636_24906476_24906715_24908694
transcript_38532.known	chr17	-	1177	4	FSM	ENSMUSG00000040888.11	ENSMUST00000234520.2	1177	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	273.584843634779	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGCTGGTTTCTGTGTGCT	NA	False	NA	-10	True	AATAAA	-14	NA	24915086	24912163	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24912587_24913141_24913417_24914227_24914425_24914804
transcript_38535.known	chr17	-	682	3	FSM	ENSMUSG00000040888.11	ENSMUST00000234235.2	682	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	299	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTTGATTTCTGGATGTA	NA	False	NA	6	True	ATTAAA	-27	NA	24915064	24913158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24913417_24914227_24914392_24914804
transcript_38536.known	chr17	-	1776	3	FSM	ENSMUSG00000040888.11	ENSMUST00000046839.10	1776	3	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_2	47.5	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGCTGGTTTCTGTGTGCT	NA	False	NA	-10	True	AATAAA	-14	NA	24915130	24912163	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24913417_24914227_24914425_24914804
transcript_38537.known	chr17	-	1162	4	FSM	ENSMUSG00000040888.11	ENSMUST00000234197.2	1162	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	265.654328446239	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGTTTCTGTGTGCTTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24915067	24912160	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24912611_24913164_24913417_24914227_24914425_24914804
transcript_38539.known	chr17	-	5226	22	FSM	ENSMUSG00000040688.17	ENSMUST00000126319.8	5226	22	0	0	0	0	multi-exon	FALSE	canonical	3	500	junction_14	40.675587289682	253	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCTGGGCTACAGTACAG	NA	False	NA	NA	False	NA	NA	NA	24926634	24916922	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24919760_24919849_24920009_24920093_24920166_24920253_24920358_24920576_24920636_24920715_24920873_24920950_24921022_24921118_24921350_24921449_24921598_24922211_24922316_24922965_24923025_24923109_24923252_24923340_24923523_24923605_24923700_24923784_24923861_24924120_24924292_24924370_24924456_24924538_24924681_24924774_24924823_24924908_24925005_24925088_24925141_24926497
transcript_3855.nic	chr1	+	1060	8	ISM	ENSMUSG00000026353.10	ENSMUST00000027592.6	4113	13	-31	16520	-31	3323	5prime_fragment	FALSE	canonical	3	326	junction_2	18.4766813876854	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAGAAGAAGAATTAACAAA	63	False	NA	63	True	NA	NA	NA	128171867	128190595	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_128172290_128179939_128180043_128183169_128183199_128183855_128183975_128186568_128186741_128187180_128187275_128188570_128188626_128190529
transcript_38558.known	chr17	-	183	2	FSM	ENSMUSG00000090101.2	ENSMUST00000161706.2	183	2	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_1	0	1323	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATCGTATGTTGGTGTTT	4301	False	NA	-8	True	AATAAA	-15	NA	24938939	24938504	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24938582_24938833
transcript_38559.known	chr17	+	134	1	FSM	ENSMUSG00000077709.3	ENSMUST00000104521.3	134	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTTTGGGATGTGCTGGT	6899	False	NA	NA	False	NA	NA	NA	24939745	24939879	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24939700_24939900
transcript_38560.known	chr17	+	998	6	FSM	ENSMUSG00000044533.16	ENSMUST00000170715.8	998	6	0	0	0	0	multi-exon	FALSE	canonical	3	3280	junction_1	2855.80020309545	82723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTATGTTTTTTTTTGTCTG	6190	False	NA	1	True	AATAAA	-20	NA	24939036	24940900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24939107_24939246_24939427_24939507_24939706_24939942_24940277_24940596_24940689_24940776
transcript_38561.known	chr17	+	823	2	FSM	ENSMUSG00000044533.16	ENSMUST00000122809.2	823	2	0	0	0	0	multi-exon	FALSE	canonical	3	9469	junction_1	0	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAGCTCTGCTGGATCACA	6400	False	NA	NA	False	NA	NA	NA	24939246	24940306	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24939706_24939942
transcript_38562.known	chr17	+	389	2	FSM	ENSMUSG00000044533.16	ENSMUST00000132803.2	389	2	0	0	0	0	multi-exon	FALSE	canonical	3	10975	junction_1	0	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGTTTTTTTTTGTCT	7576	False	NA	0	True	AATAAA	-19	NA	24940422	24940899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24940689_24940776
transcript_38563.known	chr17	+	962	5	FSM	ENSMUSG00000044533.16	ENSMUST00000146867.2	962	5	0	0	0	0	multi-exon	FALSE	canonical	2	95	junction_4	4232.31002970009	762	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGTTTTTTTTTGTCT	6378	False	NA	0	True	AATAAA	-19	NA	24939224	24940899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24939427_24939507_24939706_24939942_24940277_24940596_24940702_24940776
transcript_38573.known	chr17	-	732	4	FSM	ENSMUSG00000040048.15	ENSMUST00000045602.9	732	4	0	0	0	0	multi-exon	FALSE	canonical	3	2001	junction_1	127.206743357243	19188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTCTGGTGACTAAA	NA	False	NA	NA	False	AATAAA	-22	NA	24943452	24941033	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24941195_24941354_24941495_24941628_24941768_24943160
transcript_38574.known	chr17	-	834	3	FSM	ENSMUSG00000040048.15	ENSMUST00000129451.2	834	3	0	0	0	0	multi-exon	FALSE	canonical	3	2248	junction_2	20.5	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTCTGGTGACTAAA	NA	False	NA	NA	False	AATAAA	-22	NA	24943394	24941033	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_24941495_24941628_24941768_24943160
transcript_38575.known	chr17	+	1375	10	FSM	ENSMUSG00000002500.16	ENSMUST00000170239.9	1375	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.96158079150358	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTCTGTCTCTGTGTGTC	NA	False	NA	18	True	AATAAA	-18	NA	24946793	24955117	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24946861_24947290_24947484_24949842_24950012_24951309_24951446_24952282_24952470_24952557_24952719_24952890_24952993_24954390_24954487_24954695_24954816_24954973
transcript_38579.known	chr17	+	1033	7	FSM	ENSMUSG00000002500.16	ENSMUST00000045186.11	1033	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	4.58257569495584	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTCTGTCTCTGTGTGTC	NA	False	NA	18	True	AATAAA	-18	NA	24951658	24955117	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24951882_24952282_24952470_24952557_24952719_24952890_24952993_24954390_24954487_24954695_24954816_24954973
transcript_3858.nic	chr1	+	786	3	ISM	ENSMUSG00000026353.10	ENSMUST00000027592.6	4113	13	-31	23685	-31	-3842	5prime_fragment	FALSE	canonical	3	326	junction_2	10	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAGGAGAAAAAAATTAGGAA	63	False	NA	NA	False	NA	NA	NA	128171867	128183430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_128172290_128179939_128180043_128183169
transcript_38584.known	chr17	+	1211	4	FSM	ENSMUSG00000075705.14	ENSMUST00000101800.7	1211	4	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_3	11.8602979164381	505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCGTTTCCGTGTTTGTTG	NA	False	NA	12	True	AATAAA	-12	NA	24955655	24961745	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24955737_24958472_24958622_24959053_24959169_24960879
transcript_38585.known	chr17	+	886	5	FSM	ENSMUSG00000075705.14	ENSMUST00000115262.9	886	5	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_4	30.3685692781204	1557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGTGTTTGTTGTCTCATG	NA	False	NA	19	True	AATAAA	-19	NA	24955615	24961752	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24955737_24958472_24958622_24959053_24959169_24960879_24960912_24961283
transcript_38586.known	chr17	+	1220	2	FSM	ENSMUSG00000039628.10	ENSMUST00000044922.8	1220	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGACTTGAAGGTGTGGG	NA	False	NA	NA	False	AATAAA	-22	NA	24971976	24977658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_24972473_24976934
transcript_38587.known	chr17	+	1665	13	FSM	ENSMUSG00000024155.9	ENSMUST00000234372.2	1665	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.862006702732383	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATGAATGATTTCTTTGT	6678	False	NA	NA	False	AATAAA	-21	NA	25023262	25058762	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_25023387_25031977_25032056_25035505_25035564_25038845_25038919_25042505_25042702_25046905_25047007_25047925_25047979_25048063_25048160_25051398_25051498_25052868_25053023_25053965_25054150_25055409_25055497_25058400
transcript_38590.known	chr17	+	1101	9	FSM	ENSMUSG00000024158.18	ENSMUST00000024974.16	1101	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	126.378152779664	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCTTATGGACTCTTT	NA	False	NA	11	True	AAAAAG	-24	NA	25069640	25083424	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_25069730_25071704_25071881_25072605_25072671_25075611_25075730_25076489_25076599_25079919_25080024_25080286_25080389_25082650_25082731_25083166
transcript_38593.known	chr17	+	649	5	FSM	ENSMUSG00000024158.18	ENSMUST00000163132.2	649	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	165.255862225822	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACCTCTGCTTATGGACT	NA	False	NA	7	True	AAAAAG	-20	NA	25077174	25083420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_25077284_25079919_25080024_25080286_25080389_25082650_25082731_25083166
transcript_38597.known	chr17	-	1473	1	FSM	ENSMUSG00000045316.6	ENSMUST00000049642.6	1473	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	347	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCACTTTCTTTTCCCAGG	NA	False	NA	3	True	AATAAA	-24	NA	25069338	25067865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_25067900_25069300
transcript_38598.known	chr17	+	1191	9	FSM	ENSMUSG00000024158.18	ENSMUST00000118788.8	1191	9	0	0	0	0	multi-exon	FALSE	canonical	3	330	junction_6	27.6812210713328	1510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCTTATGGACTCTTT	NA	False	NA	11	True	AAAAAG	-24	NA	25069463	25083424	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_25069643_25071704_25071881_25072605_25072671_25075611_25075730_25076489_25076599_25079919_25080024_25080286_25080389_25082650_25082731_25083166
transcript_38599.known	chr17	+	2625	2	FSM	ENSMUSG00000046070.10	ENSMUST00000050714.8	2625	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTGTGACCTAGAGTGTG	7775	False	NA	9	True	ATTAAA	-16	NA	25097231	25100984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_25097799_25098926
transcript_38600.known	chr17	-	1445	7	FSM	ENSMUSG00000039183.7	ENSMUST00000234579.2	1445	7	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_6	253.310580118557	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAAGGTGTCTGTCTTGTT	NA	False	NA	-5	True	AGTAAA	-25	NA	25105313	25101584	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692_25104838_25105252
transcript_38604.known	chr17	-	1221	6	FSM	ENSMUSG00000039183.7	ENSMUST00000234261.2	1221	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	327.65310924818	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCAAGGTGTCTGTCTTGT	NA	False	NA	-6	True	AGTAAA	-24	NA	25105289	25101585	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104692_25104838_25105252
transcript_38605.known	chr17	-	1191	6	FSM	ENSMUSG00000039183.7	ENSMUST00000234293.2	1191	6	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_5	321.432419024591	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTGGTCAAGGTGTCTG	NA	False	NA	-12	True	AGTAAA	-18	NA	25105303	25101591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104692_25104812_25105264
transcript_38606.known	chr17	-	1423	7	FSM	ENSMUSG00000039183.7	ENSMUST00000234489.2	1423	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	262.106636483872	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTGGTCAAGGTGTCT	NA	False	NA	-13	True	AGTAAA	-17	NA	25105294	25101592	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103561_25104392_25104592_25104692_25104812_25105252
transcript_38607.known	chr17	-	1502	7	FSM	ENSMUSG00000039183.7	ENSMUST00000234968.2	1502	7	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	246.820953999723	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTGGTCAAGGTGTCTGT	NA	False	NA	-11	True	AGTAAA	-19	NA	25105307	25101590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_25102384_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692_25104812_25105252
transcript_38608.known	chr17	-	899	7	FSM	ENSMUSG00000039183.7	ENSMUST00000234583.2	899	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	259.170257209855	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAGAGATCTGCAGGCCC	NA	False	NA	NA	False	NA	NA	NA	25105303	25102022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103458_25104392_25104592_25104692_25104812_25105252
transcript_38621.known	chr17	+	1641	7	FSM	ENSMUSG00000024160.17	ENSMUST00000117890.8	1641	7	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	37.7388688519174	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTGTCTATTGTTT	NA	False	NA	NA	False	ATTAAA	-22	NA	25105616	25111123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_25105735_25106753_25106892_25109256_25109435_25109541_25109730_25109806_25109910_25109984_25110111_25110333
transcript_38627.known	chr17	+	1949	7	FSM	ENSMUSG00000024160.17	ENSMUST00000120943.8	1949	7	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	56.1921307262463	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTGTCTATTGTTT	NA	False	NA	NA	False	ATTAAA	-22	NA	25105653	25111123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_25106080_25106753_25106892_25109256_25109435_25109541_25109730_25109806_25109910_25109984_25110111_25110333
transcript_38629.known	chr17	+	1947	7	FSM	ENSMUSG00000024160.17	ENSMUST00000024976.5	1947	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	71.820957944043	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTGTCTATTGTTT	NA	False	NA	NA	False	ATTAAA	-22	NA	25106138	25111123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_25106563_25106753_25106892_25109256_25109435_25109541_25109730_25109806_25109910_25109984_25110111_25110333
transcript_38652.known	chr17	-	1239	2	FSM	ENSMUSG00000024163.18	ENSMUST00000148360.2	1239	2	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATTTAAAAAAAAAATG	NA	False	NA	NA	False	NA	NA	NA	25155919	25146093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_25146924_25155510
transcript_38654.known	chr17	+	918	3	FSM	ENSMUSG00000038880.14	ENSMUST00000043907.14	918	3	0	0	0	0	multi-exon	FALSE	canonical	3	645	junction_1	12	4349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTGTGGTTTCATTACA	NA	False	NA	16	True	AATAAA	-16	NA	25114089	25115263	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_25114463_25114635_25114679_25114761
transcript_38655.known	chr17	-	1521	8	FSM	ENSMUSG00000073436.12	ENSMUST00000121542.2	1521	8	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_1	4.68606270481621	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGGCATTTGTGAAGGC	1864	False	NA	NA	False	GATAAA	-16	NA	25114061	25111125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_25111658_25111728_25111919_25112012_25112129_25112278_25112373_25112524_25112617_25113104_25113198_25113544_25113682_25113794
transcript_38656.known	chr17	-	1575	7	FSM	ENSMUSG00000073436.12	ENSMUST00000139754.8	1575	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	12.9185482500507	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCTTGGGCATTTGTGAA	1892	False	NA	NA	False	GATAAA	-13	NA	25114033	25111128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_25111919_25112012_25112129_25112278_25112373_25112524_25112617_25113104_25113198_25113544_25113730_25113828
transcript_38657.known	chr17	+	1884	6	FSM	ENSMUSG00000038880.14	ENSMUST00000154236.2	1884	6	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_5	226.408480406543	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGCGCTGGTGAAGTTTC	NA	False	NA	16	True	AATAAA	-15	NA	25114096	25116476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_25114463_25114635_25114679_25114761_25115733_25115825_25115928_25116001_25116115_25116187
transcript_3866.known	chr1	-	2910	17	FSM	ENSMUSG00000026355.12	ENSMUST00000027601.11	2910	17	0	0	0	0	multi-exon	FALSE	canonical	3	2842	junction_6	235.478734443261	2421	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTGTTGGATTCATTTC	NA	False	NA	-21	True	AATAAA	-17	NA	128287401	128259326	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273608_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
transcript_38660.known	chr17	-	1430	6	FSM	ENSMUSG00000024165.10	ENSMUST00000233067.2	1430	6	0	0	0	0	multi-exon	TRUE	canonical	1	8	junction_1	714.702007832635	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	4793	False	NA	NA	False	NA	NA	NA	25179643	25156392	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_25157141_25163413_25163653_25164553_25164603_25167611_25167755_25174991_25175141_25179541
transcript_38661.known	chr17	-	2672	5	FSM	ENSMUSG00000024165.10	ENSMUST00000024981.9	2672	5	0	0	0	0	multi-exon	FALSE	canonical	3	1697	junction_3	70.6872513258225	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTGCCAATATTTTTCT	4773	False	NA	-1	True	ATTAAA	-17	NA	25179663	25161443	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_25163653_25164553_25164603_25167611_25167755_25174991_25175141_25179541
transcript_38662.known	chr17	-	3530	21	FSM	ENSMUSG00000024170.16	ENSMUST00000115181.9	3530	21	0	0	0	0	multi-exon	TRUE	canonical	3	51	junction_18	13.9207578816672	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGCTTCTGTGGTTCTTA	NA	False	NA	-1	True	AATAAA	-21	NA	25334941	25318543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_25319095_25320272_25320389_25320613_25320679_25320984_25321085_25321610_25321703_25322553_25322746_25323580_25323653_25323781_25323899_25324057_25324150_25324319_25324409_25324703_25324818_25324962_25325043_25325745_25325883_25325962_25326105_25326300_25326370_25329200_25329304_25329680_25329829_25330089_25330159_25331953_25332232_25333910_25334260_25334386
transcript_38665.known	chr17	-	1697	2	FSM	ENSMUSG00000024170.16	ENSMUST00000130525.2	1697	2	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTGTGCCAACAGGCCAG	NA	False	NA	NA	False	NA	NA	NA	25334928	25333104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_25334260_25334386
transcript_38667.known	chr17	+	4067	25	FSM	ENSMUSG00000036636.11	ENSMUST00000233633.2	4067	25	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_13	27.2258748966657	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTATTTTTATTTTGACT	NA	False	NA	20	True	NA	NA	NA	25352364	25381078	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_25352589_25363403_25363473_25364542_25364615_25364741_25364808_25365290_25365424_25365743_25365854_25366683_25366765_25368012_25368076_25368184_25368269_25369160_25369255_25369515_25369581_25370089_25370207_25370677_25370729_25371321_25371383_25371989_25372129_25372705_25372800_25374341_25374512_25375774_25375827_25376113_25376242_25376462_25376549_25376845_25376976_25378441_25378502_25378583_25378761_25379103_25379185_25379418
transcript_38675.known	chr17	+	3030	2	FSM	ENSMUSG00000067722.5	ENSMUST00000088307.5	3030	2	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_1	0	2400	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGTATGTCTCTCTGTTA	NA	False	NA	NA	False	AATATA	-16	NA	25403527	25406636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_25403615_25403693
transcript_38678.known	chr17	-	1234	11	FSM	ENSMUSG00000035521.14	ENSMUST00000038973.7	1234	11	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_3	15.4275727189989	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAATGGTTATGTATTATA	NA	False	NA	85	True	ATTAAA	-32	NA	25459090	25453290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_25453697_25453781_25453864_25453953_25454086_25454155_25454239_25454318_25454434_25454507_25454602_25454678_25454763_25454829_25454885_25458748_25458817_25458887_25458946_25459033
transcript_387.known	SIRV5	+	1890	17	FSM	SIRV5A	SIRV501	1890	17	0	0	0	0	multi-exon	FALSE	canonical	3	1808	junction_14	3064.59256060247	1631	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	1056	10991	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV5_+_1150_1987_2034_2119_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858
transcript_38711.known	chr17	-	2249	11	FSM	ENSMUSG00000035521.14	ENSMUST00000115154.11	2249	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	52.1813184961821	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAATGTTTTATATCTA	NA	False	NA	NA	False	ATTAAA	-22	NA	25459098	25452304	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_25453697_25453781_25453864_25453953_25454086_25454155_25454239_25454318_25454455_25454507_25454602_25454678_25454763_25454829_25454885_25458748_25458817_25458887_25458946_25459033
transcript_38715.nnic	chr17	+	1172	6	NNC	ENSMUSG00000015126.10	novel	1192	6	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	166.883672059312	446	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGTTGCTTTGTACGTGG	4602	False	NA	28	True	AATAAA	-18	NA	25459142	25461772	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_25459339_25459417_25459617_25460037_25460232_25460661_25460836_25461132_25461197_25461427
transcript_3872.known	chr1	-	2175	16	FSM	ENSMUSG00000026356.16	ENSMUST00000027602.15	2175	16	0	0	0	0	multi-exon	TRUE	canonical	3	1712	junction_8	135.919976456737	5407	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAGTGTTGTGTGACTTT	NA	False	NA	-4	True	AATAAA	-14	NA	128345096	128291443	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128297229_128297273_128299876_128300024_128301673_128301822_128303914_128304050_128306502_128306615_128314853_128314914_128316855_128316937_128319007_128319111_128333102_128333206_128341396_128341490_128343090_128343149_128344888
transcript_38721.known	chr17	+	1192	6	FSM	ENSMUSG00000015126.10	ENSMUST00000063574.7	1192	6	0	0	0	0	multi-exon	FALSE	canonical	3	375	junction_2	34.9685573050991	2218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGTTGCTTTGTACGTGG	4603	False	NA	28	True	AATAAA	-18	NA	25459143	25461772	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_25459339_25459417_25459638_25460037_25460232_25460661_25460836_25461132_25461197_25461427
transcript_38729.nnic	chr17	+	1383	5	NIC	ENSMUSG00000015126.10	novel	1192	6	NA	NA	-411	0	intron_retention	FALSE	canonical	2	14	junction_1	185.290312752718	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGTTGCTTTGTACGTGG	4192	False	NA	28	True	AATAAA	-18	NA	25458732	25461772	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_25459339_25460037_25460232_25460661_25460836_25461132_25461197_25461427
transcript_3874.known	chr1	-	1805	2	FSM	ENSMUSG00000045382.7	ENSMUST00000052172.7	1805	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCTGTGTGCTATGTCA	NA	False	NA	NA	False	AATAAA	-19	NA	128520027	128515935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_128517639_128519925
transcript_38749.known	chr17	-	1559	8	FSM	ENSMUSG00000015120.16	ENSMUST00000172618.8	1559	8	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_7	2152.45295286232	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCCTAGCAGCTAGTTT	4216	False	NA	NA	False	GATAAA	-15	NA	25492888	25481152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25491511_25491740_25492294
transcript_3875.known	chr1	-	378	1	FSM	ENSMUSG00000094122.2	ENSMUST00000086596.2	378	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1592	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTACTCATGTCAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	129729501	129729123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_129729100_129729500
transcript_3876.known	chr1	-	1325	10	FSM	ENSMUSG00000026401.16	ENSMUST00000112488.9	1325	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	14.6472936024558	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCACATTGTGAGGTTGA	NA	False	NA	NA	False	NA	NA	NA	130350746	130316273	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_130316467_130337608_130337630_130338365_130338429_130339129_130339277_130341785_130341978_130344575_130344662_130345844_130345945_130347337_130347530_130349851_130350038_130350601
transcript_38764.known	chr17	-	623	7	FSM	ENSMUSG00000015120.16	ENSMUST00000174001.8	623	7	0	0	0	0	multi-exon	FALSE	canonical	1	11	junction_6	1817.20451518259	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTGGCAAGAACTTGTTT	3508	False	NA	NA	False	NA	NA	NA	25493596	25481366	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25493496
transcript_38766.known	chr17	-	824	7	FSM	ENSMUSG00000015120.16	ENSMUST00000174031.8	824	7	0	0	0	0	multi-exon	FALSE	canonical	3	4214	junction_6	321.557148886477	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCCATTTCCGCCACTG	4596	False	NA	NA	False	NA	NA	NA	25492508	25481279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25492294
transcript_38767.known	chr17	-	890	7	FSM	ENSMUSG00000015120.16	ENSMUST00000173713.8	890	7	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_6	1745.07048568246	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTAGCAGCTAGTTTCTTT	3820	False	NA	NA	False	GATAAA	-19	NA	25493284	25481148	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25493135
transcript_38768.known	chr17	-	429	5	FSM	ENSMUSG00000015120.16	ENSMUST00000173621.8	429	5	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_4	1958.45123758545	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCCAGCTATCACCATCAA	4540	False	NA	NA	False	NA	NA	NA	25492564	25484116	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25492455
transcript_38769.known	chr17	+	777	3	FSM	ENSMUSG00000033200.17	ENSMUST00000162021.8	777	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGCTGAGCCTGACAGCCT	NA	False	NA	NA	False	CATAAA	-19	NA	25589526	25593414	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_25589675_25592698_25592845_25592931
transcript_3877.nic	chr1	-	2772	10	NIC	ENSMUSG00000026399.13	novel	2533	10	NA	NA	-60	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_9	18.9912260443255	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTTGTCTCCTGTAATA	NA	False	NA	NA	False	TTTAAA	-45	NA	130390248	130366763	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_130368117_130375355_130375377_130376064_130376146_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130389834
transcript_38770.known	chr17	+	965	4	FSM	ENSMUSG00000091475.5	ENSMUST00000234504.2	965	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.88561808316413	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTGTGTCTGTCCTGCA	3256	False	NA	2	True	AATAAA	-5	NA	25789855	25793997	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_25790076_25792959_25793108_25793220_25793507_25793686
transcript_38771.known	chr17	+	1164	3	FSM	ENSMUSG00000091475.5	ENSMUST00000235022.2	1164	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTGCATTTATTCCCTT	3181	False	NA	13	True	AATAAA	-16	NA	25789780	25794008	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_25790076_25792959_25793507_25793686
transcript_38772.known	chr17	+	1802	2	FSM	ENSMUSG00000091475.5	ENSMUST00000163493.4	1802	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTCCCTTGAATGTGGT	2732	False	NA	22	True	AATAAA	-25	NA	25789331	25794017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_25790076_25792959
transcript_38773.known	chr17	+	1194	3	FSM	ENSMUSG00000091475.5	ENSMUST00000239478.2	1194	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTGCATTTATTCCCTT	3218	False	NA	13	True	AATAAA	-16	NA	25789817	25794008	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_25790076_25792959_25793108_25793220
transcript_38774.known	chr17	+	1858	11	FSM	ENSMUSG00000002279.20	ENSMUST00000116641.9	1858	11	0	0	0	0	multi-exon	FALSE	canonical	1	15	junction_2	37.5467708331888	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCAGCCTCCTGTCTCTAT	NA	False	NA	107	True	NA	NA	NA	25798150	25881800	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_25798354_25804516_25804827_25807649_25807661_25831269_25831419_25850708_25850775_25864122_25864291_25873393_25873581_25874061_25874216_25874358_25874543_25874974_25875088_25881487
transcript_38779.known	chr17	+	1861	11	FSM	ENSMUSG00000002279.20	ENSMUST00000063344.15	1861	11	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	48.2406467618335	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCAGCCTCCTGTCTCTAT	NA	False	NA	107	True	NA	NA	NA	25798147	25881800	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_25798354_25804516_25804827_25822736_25822748_25831269_25831419_25850708_25850775_25864122_25864291_25873393_25873581_25874061_25874216_25874358_25874543_25874974_25875088_25881487
transcript_3878.known	chr1	-	2533	10	FSM	ENSMUSG00000026399.13	ENSMUST00000027650.13	2533	10	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_3	13.0705587551887	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTTGTCTCCTGTAATA	NA	False	NA	NA	False	TTTAAA	-45	NA	130390481	130366763	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_130368117_130375355_130375377_130376064_130376146_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130390306
transcript_38786.known	chr17	+	1424	9	FSM	ENSMUSG00000002279.20	ENSMUST00000137201.8	1424	9	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	39.6917812651435	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTTCTCTACCTATACTGT	NA	False	NA	4	True	AATAAA	-15	NA	25798160	25881697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_25798354_25831269_25831419_25850708_25850775_25864122_25864291_25873393_25873581_25874061_25874216_25874358_25874543_25874974_25875088_25881487
transcript_3879.nic	chr1	-	1589	10	NIC	ENSMUSG00000026399.13	novel	2533	10	NA	NA	-60	-56	combination_of_known_junctions	FALSE	canonical	3	19	junction_9	18.9912260443255	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTGCATGCTGTCATTG	NA	False	NA	NA	False	AATAAA	-16	NA	130390248	130367946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_130368117_130375355_130375377_130376064_130376146_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130389834
transcript_38791.known	chr17	+	2769	4	FSM	ENSMUSG00000002279.20	ENSMUST00000126164.8	2769	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	51.9807656734681	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCGTGAGTCTCTGCATCT	NA	False	NA	NA	False	NA	NA	NA	25798160	25817530	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_25798354_25804516_25804827_25807649_25807661_25815275
transcript_38793.known	chr17	-	3214	22	FSM	ENSMUSG00000019214.15	ENSMUST00000048054.14	3214	22	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_21	100.708127696462	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTGGGGAGTGTCAGT	5674	False	NA	NA	False	NA	NA	NA	25946393	25937899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_25938259_25938341_25938400_25938625_25938758_25938838_25938984_25939573_25939705_25939797_25939948_25940032_25940258_25941064_25941213_25941619_25941751_25941817_25941917_25942193_25942288_25942376_25942526_25942616_25942741_25942976_25943075_25943502_25943713_25944469_25944609_25944715_25944769_25944853_25944947_25945348_25945524_25945674_25945823_25945914_25946095_25946220
transcript_38797.known	chr17	-	1613	7	FSM	ENSMUSG00000019214.15	ENSMUST00000237158.2	1613	7	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_6	169.684756730434	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGGCTTGGCAGGGCCC	5737	False	NA	NA	False	NA	NA	NA	25946330	25943754	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_25944609_25944715_25944769_25944853_25944947_25945348_25945524_25945674_25945823_25945914_25946095_25946220
transcript_38801.known	chr17	+	719	3	FSM	ENSMUSG00000025739.14	ENSMUST00000172002.8	719	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	1.5	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGAAGTCCCTCTCAGGC	NA	False	NA	NA	False	NA	NA	NA	25936144	25938380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_25936252_25937640_25937773_25937900
transcript_38802.known	chr17	+	347	3	FSM	ENSMUSG00000025739.14	ENSMUST00000115108.4	347	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	1.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCTTTAGTCCATTCCC	NA	False	NA	16	True	TATAAA	-18	NA	25936501	25938061	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_25936556_25937640_25937773_25937900
transcript_38804.known	chr17	-	3812	19	FSM	ENSMUSG00000019214.15	ENSMUST00000168914.2	3812	19	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_18	106.239247821969	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGATGGTGCACTTGGCCT	5727	False	NA	-1	True	TATAAA	-34	NA	25946340	25938003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_25938259_25938341_25938400_25938625_25938758_25938838_25938984_25939573_25939705_25939797_25939948_25940032_25940258_25941064_25941213_25941619_25941751_25941817_25941917_25942193_25942288_25942376_25943713_25944469_25944609_25944715_25944769_25944853_25944947_25945348_25945524_25945674_25945823_25945914_25946095_25946220
transcript_38805.known	chr17	+	1745	6	FSM	ENSMUSG00000041199.4	ENSMUST00000047273.3	1745	6	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	16.0299719276111	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGACCATGAGCATATCT	NA	False	NA	24	True	AATAAA	-21	NA	25946690	25950438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_25946822_25947176_25947366_25947496_25947621_25947799_25947903_25948041_25948144_25949342
transcript_38806.known	chr17	+	1761	6	FSM	ENSMUSG00000041199.4	ENSMUST00000237785.2	1761	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	25.198412648419	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGAGAGTGACCATGAGC	NA	False	NA	18	True	AATAAA	-15	NA	25946690	25950432	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_25946822_25947154_25947366_25947496_25947621_25947799_25947903_25948041_25948144_25949342
transcript_38807.known	chr17	+	1743	6	FSM	ENSMUSG00000041199.4	ENSMUST00000237183.2	1743	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	28.5096474899287	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGACCATGAGCATATCT	NA	False	NA	24	True	AATAAA	-21	NA	25946643	25950438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_25946822_25947225_25947366_25947496_25947621_25947799_25947903_25948041_25948144_25949342
transcript_38810.known	chr17	+	1531	5	FSM	ENSMUSG00000041199.4	ENSMUST00000235645.2	1531	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	24.712092181764	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATCTTGAGAGTGACCAT	NA	False	NA	14	True	AATAAA	-11	NA	25946705	25950428	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_25946822_25947496_25947621_25947799_25947903_25948041_25948144_25949342
transcript_38813.known	chr17	-	2054	17	FSM	ENSMUSG00000063011.8	ENSMUST00000236137.2	2054	17	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_13	16.7330838087305	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGATGTCCTGTAGTGTTC	6592	False	NA	-5	True	AATAAA	-19	NA	25973351	25967589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_25967805_25967874_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969389_25969648_25969828_25970052_25970153_25970226_25970318_25970543_25970738_25970829_25970960_25971262_25971349_25971915_25972049_25972351_25972399_25972747_25972792_25973105_25973197_25973316
transcript_38816.known	chr17	-	2165	16	FSM	ENSMUSG00000063011.8	ENSMUST00000238120.2	2165	16	0	0	0	0	multi-exon	TRUE	canonical	3	34	junction_13	10.6111052937739	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTCCTGTAGTGTTCCTA	6592	False	NA	-2	True	AATAAA	-22	NA	25973351	25967586	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_25967805_25967874_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969389_25969648_25969828_25970052_25970153_25970226_25970318_25970543_25970738_25970829_25970960_25971262_25971349_25971915_25972037_25972351_25972399_25972747_25972792_25973105
transcript_3882.nnic	chr1	-	2691	9	NIC	ENSMUSG00000026399.13	novel	2533	10	NA	NA	-60	0	combination_of_known_splicesites	FALSE	canonical	2	9	junction_2	25.6855990780826	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTTGTCTCCTGTAATA	NA	False	NA	NA	False	TTTAAA	-45	NA	130390248	130366763	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_130368117_130375355_130375377_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130389834
transcript_38820.nic	chr17	+	1882	11	NIC	ENSMUSG00000002280.12	novel	1921	11	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_10	76.6329563569095	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATCCACTGTGTGTCTGGT	6939	False	NA	8	True	AATAAA	-20	NA	25992768	26001767	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_25992862_25994019_25994116_25995939_25996084_25996298_25996432_25997923_25998059_25998471_25998591_25999280_25999411_25999853_25999927_26000214_26000353_26000661_26000705_26000989
transcript_38821.known	chr17	+	2555	11	FSM	ENSMUSG00000002280.12	ENSMUST00000002350.11	2555	11	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_8	20.6145579627602	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAACTACTCAAATGACTGC	6920	False	NA	NA	False	AATAAA	-19	NA	25992749	26002306	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_25992862_25994019_25994116_25995939_25996084_25996298_25996432_25997923_25998059_25998471_25998591_25999280_25999411_25999853_25999927_26000214_26000353_26000661_26000820_26000989
transcript_38823.nic	chr17	+	2283	10	NIC	ENSMUSG00000002280.12	novel	2062	11	NA	NA	-9	0	intron_retention	FALSE	canonical	3	241	junction_4	18.6368809979925	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGATCCACTGTGTGTCTG	6939	False	NA	6	True	AATAAA	-18	NA	25992768	26001765	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_25992862_25994019_25994116_25995939_25996084_25996298_25996432_25997923_25998059_25998471_25998591_25999280_25999411_25999853_26000353_26000661_26000820_26000989
transcript_38825.known	chr17	-	1194	9	FSM	ENSMUSG00000061046.10	ENSMUST00000140738.8	1194	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	18.9868375460475	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGGGTGTGACAAGTATT	4386	False	NA	NA	False	NA	NA	NA	26004514	25998816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_25999129_26002476_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26003977_26004169_26004401
transcript_38828.known	chr17	-	1405	9	FSM	ENSMUSG00000061046.10	ENSMUST00000077938.10	1405	9	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_4	8.07387763097757	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGCAGGTCTGTTTATT	4253	False	NA	-1	True	NA	NA	NA	26004647	26001762	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26002153_26002476_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26003977_26004169_26004401
transcript_3883.nnic	chr1	-	2700	9	NIC	ENSMUSG00000026399.13	novel	2533	10	NA	NA	-248	0	combination_of_known_splicesites	FALSE	canonical	2	9	junction_2	21.5982493503525	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTTGTCTCCTGTAATA	NA	False	NA	NA	False	TTTAAA	-45	NA	130390729	130366763	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_130368117_130375355_130375377_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130390306
transcript_38833.known	chr17	-	1128	8	FSM	ENSMUSG00000061046.10	ENSMUST00000133071.8	1128	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_7	17.8953876169024	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGCAGGTCTGTTTATT	4344	False	NA	-1	True	NA	NA	NA	26004556	26001762	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26002153_26002476_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26004396
transcript_38834.known	chr17	-	1074	8	FSM	ENSMUSG00000061046.10	ENSMUST00000138759.8	1074	8	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_7	17.2496672549984	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGTGGTACCAGACACAC	4359	False	NA	-35	True	AATAAA	-14	NA	26004541	26001796	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26002153_26002476_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26004401
transcript_38836.known	chr17	-	1453	8	FSM	ENSMUSG00000061046.10	ENSMUST00000137587.8	1453	8	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_3	8.31276372912923	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGATCCTTCCAGAGGTGC	4394	False	NA	-14	True	AATAAA	-35	NA	26004506	26001775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26002153_26002476_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26003977_26004169_26004401
transcript_38850.known	chr17	-	951	5	FSM	ENSMUSG00000061046.10	ENSMUST00000143248.8	951	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	8.61684396980704	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCCTGCAACGAACACGTG	4360	False	NA	NA	False	NA	NA	NA	26004540	26002802	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26002861_26003048_26003547_26003634_26003700_26003977_26004169_26004401
transcript_38851.known	chr17	-	1267	8	FSM	ENSMUSG00000061046.10	ENSMUST00000150324.8	1267	8	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_4	7.57277616039918	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGTGTGGTACCAGACAC	4588	False	NA	-37	True	AATAAA	-12	NA	26004312	26001798	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26002153_26002476_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26003977
transcript_38854.known	chr17	-	641	5	FSM	ENSMUSG00000057411.10	ENSMUST00000236161.2	641	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	93.5050132345854	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAATCCTGACTTTTGTTT	8688	False	NA	-12	True	AATAAA	-12	NA	26011051	26009484	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545_26010651_26010975
transcript_38855.known	chr17	-	1321	5	FSM	ENSMUSG00000057411.10	ENSMUST00000072735.9	1321	5	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_4	48.7185796180472	1157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTTGTTTGTTCCAGGAA	9977	False	NA	-2	True	AATAAA	-22	NA	26011772	26009474	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545_26010651_26011026
transcript_38857.known	chr17	-	627	5	FSM	ENSMUSG00000057411.10	ENSMUST00000236683.2	627	5	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_4	82.996987897152	726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	8378	False	NA	-7	True	AATAAA	-17	NA	26011361	26009479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545_26010651_26011304
transcript_38858.nnic	chr17	-	731	5	NNC	ENSMUSG00000057411.10	novel	627	5	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_4	90.9763018593304	491	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	9997	False	NA	-7	True	AATAAA	-17	NA	26011862	26009479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545_26010651_26011701
transcript_38863.known	chr17	-	987	5	FSM	ENSMUSG00000002274.14	ENSMUST00000002344.7	987	5	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_4	40.1434926233381	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTCTTCTGGAGATGGGG	5840	False	NA	NA	False	NA	NA	NA	26016110	26013922	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26014266_26014347_26014408_26015214_26015616_26015838_26015951_26016039
transcript_38874.known	chr17	-	1267	4	FSM	ENSMUSG00000057411.10	ENSMUST00000235327.2	1267	4	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_3	24.4449494897321	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	8392	False	NA	-7	True	AATAAA	-17	NA	26011347	26009479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545
transcript_38875.known	chr17	-	698	4	FSM	ENSMUSG00000002274.14	ENSMUST00000235925.2	698	4	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_3	38.3173879879908	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGTGAGCTGGTAGAATA	6008	False	NA	-44	True	NA	NA	NA	26015942	26013840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26014266_26014347_26014408_26015214_26015324_26015838
transcript_38876.known	chr17	-	1528	2	FSM	ENSMUSG00000057411.10	ENSMUST00000237703.2	1528	2	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	8370	False	NA	-7	True	AATAAA	-17	NA	26011369	26009479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26009958_26010319
transcript_38877.known	chr17	+	3099	9	FSM	ENSMUSG00000025737.6	ENSMUST00000026833.6	3099	9	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_2	16.5529453572468	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTTGTCACTTTCATTG	NA	False	NA	18	True	AATAAA	-20	NA	26042600	26047704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_26043661_26044627_26044806_26044925_26045599_26046008_26046128_26046208_26046331_26046401_26046507_26046626_26046968_26047127_26047313_26047388
transcript_38878.known	chr17	+	3139	8	FSM	ENSMUSG00000025737.6	ENSMUST00000160349.2	3139	8	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_2	15.8449116277055	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTTGGCCACTTGTCA	NA	False	NA	9	True	AATAAA	-11	NA	26042622	26047695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_26043661_26044627_26044806_26044925_26045599_26046008_26046128_26046208_26046507_26046626_26046968_26047127_26047313_26047388
transcript_38880.known	chr17	+	2091	9	FSM	ENSMUSG00000025736.16	ENSMUST00000026832.14	2091	9	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	9.19238815542512	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTCCTGGTGGATGCGCC	NA	False	NA	17	True	NA	NA	NA	26048016	26050816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_26048138_26048213_26048313_26048457_26048507_26048579_26048677_26048758_26048828_26048915_26049036_26049112_26049181_26049273_26049409_26049483
transcript_38882.known	chr17	+	1951	9	FSM	ENSMUSG00000025736.16	ENSMUST00000152434.9	1951	9	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_5	27.2855272992845	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTGTCTGCTGGGGGAG	NA	False	NA	16	True	AATAAA	-18	NA	26048025	26050741	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_26048138_26048213_26048313_26048457_26048507_26048579_26048677_26048758_26048828_26048971_26049036_26049112_26049181_26049273_26049409_26049483
transcript_38885.known	chr17	+	831	8	FSM	ENSMUSG00000025736.16	ENSMUST00000123582.2	831	8	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_4	28.1953824559401	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTGCTCACAGACTTTA	NA	False	NA	NA	False	NA	NA	NA	26048093	26049607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_26048138_26048213_26048313_26048457_26048507_26048579_26048828_26048971_26049036_26049112_26049181_26049273_26049409_26049483
transcript_38894.known	chr17	-	1341	7	FSM	ENSMUSG00000039615.10	ENSMUST00000237186.2	1341	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	575.587139845528	593	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGCTTGCCAGTTGCCTG	6302	False	NA	1	True	AATAAA	-35	NA	26052378	26049589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26049985_26050075_26050193_26050282_26050340_26050517_26050606_26050769_26050936_26051019_26051219_26052059
transcript_38895.known	chr17	-	1320	7	FSM	ENSMUSG00000039615.10	ENSMUST00000236361.2	1320	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	576.693568736658	497	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCATGTGCTGGTGCA	6759	False	NA	-19	True	AATAAA	-15	NA	26051921	26049609	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26049985_26050075_26050193_26050282_26050340_26050517_26050606_26050769_26050936_26051019_26051281_26051665
transcript_38899.known	chr17	-	1408	6	FSM	ENSMUSG00000039615.10	ENSMUST00000236565.2	1408	6	0	0	0	0	multi-exon	FALSE	canonical	3	1486	junction_1	49.0167318372002	691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCATGTGCTGGTGCA	6787	False	NA	-19	True	AATAAA	-15	NA	26051893	26049609	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26049985_26050075_26050193_26050282_26050606_26050769_26050936_26051019_26051219_26051665
transcript_3890.known	chr1	-	721	3	FSM	ENSMUSG00000026399.13	ENSMUST00000133057.2	721	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	29	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTGTAAAAGTGAGTATG	NA	False	NA	NA	False	NA	NA	NA	130390188	130387329	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_130387511_130389558_130389745_130389834
transcript_38900.known	chr17	-	1498	5	FSM	ENSMUSG00000039615.10	ENSMUST00000235484.2	1498	5	0	0	0	0	multi-exon	FALSE	canonical	3	1486	junction_1	49.4115371143218	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCATGTGCTGGTGCA	6787	False	NA	-19	True	AATAAA	-15	NA	26051893	26049609	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26049985_26050075_26050606_26050769_26050936_26051019_26051219_26051665
transcript_38901.known	chr17	-	1701	6	FSM	ENSMUSG00000039615.10	ENSMUST00000236515.2	1701	6	0	0	0	0	multi-exon	FALSE	canonical	3	1378	junction_3	90.6986218197388	602	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCATGTGCTGGTGCAGT	6765	False	NA	-17	True	AATAAA	-17	NA	26051915	26049607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26049985_26050075_26050193_26050282_26050340_26050517_26050606_26050769_26050936_26051019
transcript_38903.known	chr17	-	3189	19	FSM	ENSMUSG00000025733.18	ENSMUST00000043897.16	3189	19	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_18	11.3871272350258	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGACTGCTGTTTTTGTGT	5687	False	NA	0	True	NA	NA	NA	26063825	26057430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26058469_26058662_26058866_26058958_26059082_26059228_26059310_26059411_26059543_26059624_26059726_26059809_26059953_26060025_26060111_26060335_26060457_26060532_26060642_26060730_26060830_26060963_26061066_26061153_26061263_26061339_26061393_26062080_26062135_26062914_26062959_26063062_26063145_26063228_26063288_26063373
transcript_38910.known	chr17	-	482	4	FSM	ENSMUSG00000025733.18	ENSMUST00000176247.2	482	4	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_3	10.1434160364686	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGATCATAGCTTTCTGGGA	6008	False	NA	NA	False	NA	NA	NA	26063504	26062748	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26062959_26063062_26063145_26063228_26063288_26063373
transcript_38915.known	chr17	-	775	4	FSM	ENSMUSG00000025732.7	ENSMUST00000237876.2	775	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	137.028788540543	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCGGGTGTTGGTGATTG	8690	False	NA	-4	True	AATAAA	-15	NA	26086810	26082671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26083014_26083224_26083327_26083567_26083696_26086607
transcript_38918.known	chr17	-	842	5	FSM	ENSMUSG00000025732.7	ENSMUST00000026828.7	842	5	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	22.6770809408971	1314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCGGGTGTTGGTGATTG	7762	False	NA	-4	True	AATAAA	-15	NA	26087738	26082671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26083014_26083224_26083327_26083567_26083696_26087387_26087518_26087598
transcript_38919.known	chr17	-	945	6	FSM	ENSMUSG00000025732.7	ENSMUST00000237080.2	945	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	129.343882731268	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCGGGTGTTGGTGATTG	7792	False	NA	-4	True	AATAAA	-15	NA	26087708	26082671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26083014_26083224_26083327_26083567_26083696_26084508_26084642_26087387_26087518_26087598
transcript_3892.known	chr1	+	6128	2	FSM	ENSMUSG00000046404.6	ENSMUST00000049813.6	6128	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGCGAGCATATTTTGG	NA	False	NA	21	True	AATAAA	-16	NA	130645063	130652095	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_130645549_130646452
transcript_38920.known	chr17	+	1243	6	FSM	ENSMUSG00000025731.17	ENSMUST00000026827.16	1243	6	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_5	67.7542618585724	1257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTGGGAATACCTGGGAG	6768	False	NA	39	True	AATAAA	-40	NA	26094047	26096143	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_26094701_26094933_26095097_26095193_26095254_26095468_26095537_26095634_26095714_26095923
transcript_38923.known	chr17	+	1026	5	FSM	ENSMUSG00000025731.17	ENSMUST00000169308.8	1026	5	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_1	48.8287824955732	539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTGGGAATACCTGGGAG	7195	False	NA	39	True	AATAAA	-40	NA	26094474	26096143	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_26094701_26094933_26095097_26095193_26095254_26095468_26095537_26095634
transcript_3893.known	chr1	+	1310	5	FSM	ENSMUSG00000016529.6	ENSMUST00000016673.6	1310	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTGTGGTGTCTATTGAG	NA	False	NA	NA	False	AATAAA	-18	NA	130947581	130952711	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_130947814_130948700_130948761_130949065_130949219_130950225_130950292_130951912
transcript_38931.known	chr17	+	891	4	FSM	ENSMUSG00000025731.17	ENSMUST00000110456.3	891	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	203.922098415601	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATTGCTTGCTGGGAAT	7158	False	NA	30	True	AATAAA	-31	NA	26094437	26096134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_26094701_26095193_26095254_26095468_26095537_26095634
transcript_38933.known	chr17	+	324	3	FSM	ENSMUSG00000025731.17	ENSMUST00000169085.8	324	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	143.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTCTGTCAAAAGTTGTC	7224	False	NA	NA	False	NA	NA	NA	26094503	26095971	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_26094701_26095634_26095714_26095923
transcript_38934.known	chr17	-	3173	11	FSM	ENSMUSG00000025728.17	ENSMUST00000026823.16	3173	11	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_4	23.9309423132479	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGGTGTCCTGCTCGTC	NA	False	NA	1	True	AATAAA	-24	NA	26161022	26145394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26146731_26147764_26147827_26149494_26149610_26149931_26150013_26150435_26150548_26150647_26150802_26151078_26151206_26153731_26153853_26153976_26154109_26155737_26156437_26160788
transcript_38941.known	chr17	-	954	7	FSM	ENSMUSG00000025730.15	ENSMUST00000167018.8	954	7	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_6	27.4104602904317	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATCTCCTAGCGGGACACA	NA	False	NA	NA	False	NA	NA	NA	26138701	26102612	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26102883_26103553_26103777_26104048_26104127_26109611_26109673_26110259_26110321_26138338_26138524_26138625
transcript_38944.known	chr17	+	372	1	FSM	ENSMUSG00000057580.5	ENSMUST00000170379.2	372	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTCCCCACCACCACCAC	4032	False	NA	NA	False	AAAAAG	-39	NA	26120829	26121201	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_26120800_26121200
transcript_38945.known	chr17	-	2987	11	FSM	ENSMUSG00000025728.17	ENSMUST00000208043.2	2987	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	84.5955081549842	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCAGCTTGGGTGTCCTG	NA	False	NA	-5	True	AATAAA	-18	NA	26161797	26145400	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26146731_26147764_26147827_26149494_26149610_26149931_26150013_26150435_26150548_26150647_26150802_26151078_26151206_26153731_26153853_26153976_26154109_26155737_26156437_26161743
transcript_38947.known	chr17	+	821	2	FSM	ENSMUSG00000097523.3	ENSMUST00000180932.3	821	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTCTCAATATTTCACTA	458	False	NA	NA	False	AATATA	-18	NA	26204781	26207548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_26205011_26206956
transcript_38949.known	chr17	+	628	2	FSM	ENSMUSG00000097523.3	ENSMUST00000235528.2	628	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTAGCCTTTCCTAGGC	716	False	NA	NA	False	NA	NA	NA	26205039	26207378	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_26205246_26206956
transcript_38956.known	chr17	-	2224	9	FSM	ENSMUSG00000036775.14	ENSMUST00000040907.8	2224	9	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_7	27.3849867628232	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATAGTGCTTGTGTTTCCT	NA	False	NA	-4	True	NA	NA	NA	26309311	26300184	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26301236_26301849_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26308937
transcript_38961.known	chr17	-	2038	8	FSM	ENSMUSG00000036775.14	ENSMUST00000236268.2	2038	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	57.1607114964073	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACTGATTCTACCATGGA	NA	False	NA	-23	True	NA	NA	NA	26309249	26300203	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26301236_26301849_26302068_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26308937
transcript_38964.known	chr17	-	1849	5	FSM	ENSMUSG00000036775.14	ENSMUST00000236614.2	1849	5	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_2	18.9917745353087	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACTGATTCTACCATGGA	NA	False	NA	-23	True	NA	NA	NA	26303384	26300203	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26301236_26301849_26302068_26302549_26302655_26302818_26302913_26302984
transcript_38966.known	chr17	-	1176	3	FSM	ENSMUSG00000024177.10	ENSMUST00000236112.2	1176	3	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	7.5	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAATGGTCTACTTACTA	NA	False	NA	-6	True	ATTAAA	-16	NA	26314447	26310713	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26311127_26312590_26313245_26314338
transcript_38967.known	chr17	-	926	6	FSM	ENSMUSG00000024177.10	ENSMUST00000236547.2	926	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	147.011019995101	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGTCTACTTACTAGTTC	NA	False	NA	-2	True	ATTAAA	-20	NA	26314447	26310709	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26311127_26311480_26311532_26312590_26312704_26312832_26312935_26313110_26313245_26314338
transcript_38968.known	chr17	-	795	3	FSM	ENSMUSG00000024177.10	ENSMUST00000236967.2	795	3	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	27	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTACTTACTAGTTCTG	NA	False	NA	0	True	ATTAAA	-22	NA	26313142	26310707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26311127_26312590_26312935_26313110
transcript_38969.known	chr17	-	995	2	FSM	ENSMUSG00000024177.10	ENSMUST00000150280.3	995	2	0	0	0	0	multi-exon	FALSE	canonical	3	319	junction_1	0	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTTGAGAAGTGGGAATCT	NA	False	NA	NA	False	NA	NA	NA	26314459	26312370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26313245_26314338
transcript_38970.known	chr17	-	846	4	FSM	ENSMUSG00000024177.10	ENSMUST00000235157.2	846	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	156.043441244916	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTACTTACTAGTTCTG	NA	False	NA	0	True	ATTAAA	-22	NA	26313142	26310707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26311127_26311480_26311532_26312590_26312935_26313110
transcript_38975.known	chr17	+	1134	4	FSM	ENSMUSG00000024181.10	ENSMUST00000236040.2	1134	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	672.139039848817	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	False	NA	21	True	AGTAAA	-21	NA	26342493	26345587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_26342824_26343529_26343683_26344230_26344539_26345244
transcript_38976.known	chr17	+	1002	5	FSM	ENSMUSG00000024181.10	ENSMUST00000127647.3	1002	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	671.536670629386	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	False	NA	21	True	AGTAAA	-21	NA	26342517	26345587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_26342824_26343529_26343683_26344230_26344366_26344473_26344539_26345244
transcript_38977.known	chr17	+	1046	5	FSM	ENSMUSG00000024181.10	ENSMUST00000237950.2	1046	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	613.108677152754	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	False	NA	21	True	AGTAAA	-21	NA	26342493	26345587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_26342824_26343529_26343693_26344242_26344366_26344451_26344539_26345244
transcript_38978.known	chr17	+	1047	5	FSM	ENSMUSG00000024181.10	ENSMUST00000236166.2	1047	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	700.577752644201	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	False	NA	21	True	AGTAAA	-21	NA	26342473	26345587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_26342824_26343529_26343683_26344230_26344366_26344451_26344539_26345265
transcript_38979.nnic	chr17	-	1097	7	NNC	ENSMUSG00000073433.12	novel	1032	6	NA	NA	-9	0	intron_retention	FALSE	canonical	0	0	junction_5	42.871902220452	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGTGTGCTGCTTCTTT	NA	False	NA	-4	True	ATTAAA	-17	NA	26426769	26418156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_26418504_26418586_26418651_26418725_26418803_26418988_26419073_26419164_26419345_26425658_26425758_26426523
transcript_38980.known	chr17	-	1029	6	FSM	ENSMUSG00000073433.12	ENSMUST00000121959.3	1029	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	34.8906864363543	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGCCTGTGTGCTGCTT	NA	False	NA	-8	True	ATTAAA	-13	NA	26420343	26418160	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26418504_26418586_26418651_26418743_26418803_26418988_26419073_26419164_26419345_26420044
transcript_38981.nnic	chr17	-	826	6	NNC	ENSMUSG00000073433.12	novel	1032	6	NA	NA	1319	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	37.0156723564492	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGTGTGCTGCTTCTTT	NA	False	NA	-4	True	ATTAAA	-17	NA	26425441	26418156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_26418504_26418586_26418651_26418725_26418803_26418988_26419073_26419164_26419345_26425367
transcript_38982.known	chr17	-	736	6	FSM	ENSMUSG00000073433.12	ENSMUST00000176847.8	736	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	35.4434761274907	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCACGTGGCCTCTACGTGG	NA	False	NA	NA	False	NA	NA	NA	26426760	26418409	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26418504_26418586_26418651_26418725_26418803_26418988_26419073_26419164_26419345_26426523
transcript_38984.known	chr17	+	1241	3	FSM	ENSMUSG00000024186.16	ENSMUST00000139639.2	1241	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACAGTCCATTCTTCTGT	NA	False	NA	NA	False	AATAAA	-14	NA	26426815	26430289	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_26427277_26429430_26429514_26429592
transcript_38985.known	chr17	+	2703	15	FSM	ENSMUSG00000024186.16	ENSMUST00000147220.8	2703	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.17710723630402	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGTCCATTCTTCTGTGG	7092	False	NA	NA	False	AATAAA	-16	NA	26421949	26430291	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_26422016_26422269_26422367_26422435_26423358_26423460_26423520_26423824_26423902_26424081_26424164_26424680_26424750_26426266_26426297_26426369_26426432_26426519_26426634_26426732_26426849_26426965_26427054_26427137_26427277_26429430_26429514_26429592
transcript_38988.known	chr17	-	2833	13	FSM	ENSMUSG00000024187.16	ENSMUST00000234687.2	2833	13	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_12	40.5798253103956	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCAGCGTGAGCCTGCAGT	1928	False	NA	-17	True	AATAAA	-31	NA	26463188	26431683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26444885_26444998_26462963
transcript_38989.known	chr17	-	2828	13	FSM	ENSMUSG00000024187.16	ENSMUST00000234554.2	2828	13	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_11	57.1286924408392	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTGGATGTCTTTCTG	1920	False	NA	2	True	NA	NA	NA	26463196	26431664	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26444901_26444998_26462979
transcript_38991.known	chr17	-	2749	12	FSM	ENSMUSG00000024187.16	ENSMUST00000234175.2	2749	12	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_11	62.3582027847616	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCAGCGTGAGCCTGCAGT	1900	False	NA	-17	True	AATAAA	-31	NA	26463216	26431683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26462963
transcript_38992.known	chr17	-	2629	12	FSM	ENSMUSG00000024187.16	ENSMUST00000118487.8	2629	12	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_11	57.0232662389834	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTCCAGCGTGAGCCTGC	2001	False	NA	-20	True	AATAAA	-28	NA	26463115	26431686	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26462979
transcript_38997.known	chr17	+	1672	10	FSM	ENSMUSG00000024188.17	ENSMUST00000148894.2	1672	10	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_2	196.74976273379	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTTTACATTAGTGTATT	NA	False	NA	17	True	ATTAAA	-29	NA	26471972	26499697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_26472066_26472947_26473019_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934
transcript_39.known	ERCC-00078	+	977	1	FSM	ERCC-00078A	DQ883673	977	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	154	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00078_+_0_1000
transcript_39001.known	chr17	+	2670	9	FSM	ENSMUSG00000024188.17	ENSMUST00000133032.8	2670	9	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_1	146.829354609356	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATATGTTTACATTAGTGT	NA	False	NA	14	True	ATTAAA	-26	NA	26471957	26499694	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_26472066_26472947_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934
transcript_39006.nic	chr17	+	622	4	ISM	ENSMUSG00000024188.17	ENSMUST00000148894.2	1672	10	-114	22549	-11	-8219	5prime_fragment	FALSE	canonical	3	95	junction_2	191.701735922123	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTTGCTGTATTGAGTTT	NA	False	NA	NA	False	AATACA	-18	NA	26471858	26477148	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_26472066_26472947_26473019_26474004_26474100_26476899
transcript_39007.known	chr17	+	1700	9	FSM	ENSMUSG00000024188.17	ENSMUST00000025023.15	1700	9	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_1	74.6521098161331	790	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATATGTTTACATTAGTG	NA	False	NA	13	True	ATTAAA	-25	NA	26471869	26499693	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_26472066_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934
transcript_39008.known	chr17	+	4934	10	FSM	ENSMUSG00000024188.17	ENSMUST00000114976.9	4934	10	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_9	132.110877487879	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTGTCAGGTGTTTTGT	NA	False	NA	17	True	NA	NA	NA	26471924	26504478	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_26472066_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934_26499103_26500598
transcript_39009.known	chr17	+	2704	10	FSM	ENSMUSG00000024188.17	ENSMUST00000154235.8	2704	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	211.197175439399	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTCTAGAGTAGAGGCACT	NA	False	NA	34	True	AATAAA	-43	NA	26471939	26500966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_26473363_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934_26499103_26500598
transcript_3901.known	chr1	+	2153	15	FSM	ENSMUSG00000026427.17	ENSMUST00000112446.9	2153	15	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_14	169.094301066184	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCCTTTGTGTCTTATTT	NA	False	NA	NA	False	AGTAAA	-24	NA	131080917	131099976	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088146_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095978_131098673_131098849_131099657
transcript_39014.nic	chr17	+	1277	11	NIC	ENSMUSG00000001576.16	novel	2754	10	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_10	172.153884649752	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCACGTGTCTCTTTCCCTG	NA	False	NA	14	True	GATAAA	-16	NA	26780487	26874326	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_26780607_26827566_26827629_26833329_26833403_26843563_26843659_26848528_26848654_26853390_26853496_26854959_26855021_26857716_26857818_26860555_26860679_26873800_26873928_26874040
transcript_3902.known	chr1	+	2009	15	FSM	ENSMUSG00000026427.17	ENSMUST00000068805.14	2009	15	0	0	0	0	multi-exon	FALSE	canonical	3	546	junction_5	43.4650340351123	1141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTTATTTCTAATCTAAA	NA	False	NA	41	True	AATAAA	-22	NA	131080917	131101215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088146_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095978_131098673_131098849_131101040
transcript_39020.known	chr17	+	2754	10	FSM	ENSMUSG00000001576.16	ENSMUST00000167662.8	2754	10	0	0	0	0	multi-exon	FALSE	canonical	3	380	junction_9	34.0783411176855	618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTGCTGTGACTCTGC	NA	False	NA	11	True	ATTAAA	-15	NA	26780462	26875905	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_26780607_26827566_26827629_26833329_26833403_26843563_26843659_26848528_26848654_26853390_26853496_26854959_26855021_26857716_26857818_26860555_26860679_26874040
transcript_39044.known	chr17	+	823	4	FSM	ENSMUSG00000015575.16	ENSMUST00000015719.16	823	4	0	0	0	0	multi-exon	FALSE	canonical	3	1134	junction_3	173.829418300432	10965	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGCTCCAGTGTTTAAAA	NA	False	NA	37	True	AATAAA	-25	NA	26895343	26918621	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_26895553_26901651_26901700_26914328_26914459_26918185
transcript_39045.known	chr17	+	7462	9	FSM	ENSMUSG00000048249.15	ENSMUST00000062519.14	7462	9	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	7.89679523604354	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGTTTGCCTCATATTTT	1280	False	NA	NA	False	AATAAA	-24	NA	26934623	26995609	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_26934749_26955762_26955958_26958516_26958643_26961015_26962106_26976778_26976974_26978733_26978924_26981211_26981286_26982299_26982423_26990265
transcript_39054.known	chr17	+	1087	7	FSM	ENSMUSG00000024191.16	ENSMUST00000134344.8	1087	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	44.5374374356376	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGAGTGGTAAATGCTTAA	2049	False	NA	14	True	AATAAA	-14	NA	27000094	27011494	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_27000151_27002418_27002512_27005670_27005763_27008668_27008771_27008893_27008939_27009899_27010019_27010914
transcript_39057.known	chr17	+	1139	7	FSM	ENSMUSG00000024191.16	ENSMUST00000126505.3	1139	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	45.097733374922	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAGTGGTAAATGCTTAAC	2007	False	NA	15	True	AATAAA	-15	NA	27000052	27011495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_27000151_27001551_27001606_27002418_27002512_27005670_27005763_27008668_27008771_27009899_27010019_27010914
transcript_39060.known	chr17	+	1098	6	FSM	ENSMUSG00000024191.16	ENSMUST00000015725.16	1098	6	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	9.09945053286186	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAGTGGTAAATGCTTAAC	1994	False	NA	15	True	AATAAA	-15	NA	27000039	27011495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_27000151_27002418_27002512_27005670_27005763_27008668_27008771_27009899_27010019_27010914
transcript_39062.known	chr17	+	818	5	FSM	ENSMUSG00000024191.16	ENSMUST00000137989.2	818	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	37.8615900352851	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTCCAGAGGCCTGAGC	2086	False	NA	-81	True	NA	NA	NA	27000131	27011399	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_27000151_27002418_27002512_27008668_27008771_27009899_27010019_27010914
transcript_39063.known	chr17	+	2522	15	FSM	ENSMUSG00000024193.9	ENSMUST00000073724.7	2522	15	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_11	6.30718734816859	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAGATTGACAAGAGGCG	NA	False	NA	22	True	AATAAA	-32	NA	27152025	27156882	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_27152509_27153167_27153343_27153427_27153510_27153604_27153701_27154027_27154129_27154222_27154372_27154513_27154610_27154723_27154793_27154892_27155017_27155097_27155166_27155260_27155366_27155485_27155655_27155744_27155840_27156027_27156109_27156253
transcript_39064.known	chr17	+	2526	14	FSM	ENSMUSG00000024193.9	ENSMUST00000237189.2	2526	14	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	5.73992557113158	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTAGGCATGAGTCATTTT	NA	False	NA	3	True	AATAAA	-13	NA	27152122	27156863	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_27152509_27153167_27153343_27153427_27153510_27153604_27153701_27154027_27154129_27154222_27154372_27154513_27154610_27154723_27154793_27154892_27155017_27155097_27155166_27155260_27155655_27155744_27155840_27156027_27156109_27156253
transcript_39066.known	chr17	+	2631	11	FSM	ENSMUSG00000024301.11	ENSMUST00000078961.6	2631	11	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_5	121.140785865042	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCATTGTGATGTGTTTG	NA	False	NA	8	True	AATAAA	-20	NA	27136064	27151557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_27136260_27139770_27139906_27139993_27140094_27140780_27140835_27141649_27141698_27141878_27142277_27142982_27143763_27144415_27144707_27144799_27144874_27145193_27145270_27151077
transcript_39072.nic	chr17	-	733	6	ISM	ENSMUSG00000024194.17	ENSMUST00000025027.10	741	7	90	0	-15	0	intron_retention	FALSE	canonical	3	511	junction_5	169.834507683215	1683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCTCTGTGACATG	9342	False	NA	-17	True	AATAAA	-18	NA	27158453	27156945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158067_27158290
transcript_39076.known	chr17	-	719	6	FSM	ENSMUSG00000024194.17	ENSMUST00000236888.2	719	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	368.320838400436	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTTTCTCTGTGACAT	9387	False	NA	-18	True	AATAAA	-17	NA	27158408	27156946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_27157151_27157391_27157442_27157545_27157624_27157700_27157761_27157857_27158067_27158290
transcript_39080.known	chr17	-	785	5	FSM	ENSMUSG00000024194.17	ENSMUST00000237609.2	785	5	0	0	0	0	multi-exon	FALSE	canonical	3	511	junction_4	189.078026221981	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTTTCTCTGTGACAT	9398	False	NA	-18	True	AATAAA	-17	NA	27158397	27156946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_27157151_27157391_27157442_27157545_27157761_27157857_27158067_27158290
transcript_39090.known	chr17	+	819	3	FSM	ENSMUSG00000024301.11	ENSMUST00000236476.2	819	3	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	42	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	27136064	27140482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_27136260_27139770_27139906_27139993
transcript_39092.known	chr17	-	741	7	FSM	ENSMUSG00000024194.17	ENSMUST00000025027.10	741	7	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_6	250.570959122472	4734	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCTCTGTGACATG	9252	False	NA	-17	True	AATAAA	-18	NA	27158543	27156945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158067_27158290_27158343_27158424
transcript_39093.known	chr17	-	662	6	FSM	ENSMUSG00000024194.17	ENSMUST00000114935.9	662	6	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_5	278.895392575783	2840	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTTTCTCTGTGACAT	9278	False	NA	-18	True	AATAAA	-17	NA	27158517	27156946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158067_27158424
transcript_39094.known	chr17	-	937	6	FSM	ENSMUSG00000024194.17	ENSMUST00000236326.2	937	6	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_5	250.477144665936	1417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGCCTTTTCTCTGTGA	9276	False	NA	-21	True	AATAAA	-14	NA	27158519	27156949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158343_27158424
transcript_39095.known	chr17	-	1130	4	FSM	ENSMUSG00000024194.17	ENSMUST00000235442.2	1130	4	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_3	309.969174094601	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCTCTGTGACATG	9300	False	NA	-17	True	AATAAA	-18	NA	27158495	27156945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_27157151_27157391_27157761_27157857_27158343_27158424
transcript_39096.known	chr17	-	475	3	FSM	ENSMUSG00000024194.17	ENSMUST00000235460.2	475	3	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_2	377.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAGGAAAGATCGAGGAAG	9283	False	NA	NA	False	NA	NA	NA	27158512	27157582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_27157761_27157857_27158067_27158424
transcript_39101.known	chr17	+	1138	7	FSM	ENSMUSG00000048731.16	ENSMUST00000122106.9	1138	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	8.62972897733308	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGGGCTGTCTGTCCCC	NA	False	NA	19	True	AATAAA	-20	NA	27236966	27255352	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_27237145_27244310_27244434_27249649_27249775_27251536_27251632_27251734_27251946_27253738_27253879_27255086
transcript_39105.known	chr17	+	1525	6	FSM	ENSMUSG00000048731.16	ENSMUST00000053683.7	1525	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	9.15204895091804	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGGGCTGTCTGTCCCC	NA	False	NA	19	True	AATAAA	-20	NA	27248232	27255352	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_27248921_27249649_27249775_27251536_27251632_27251734_27251946_27253738_27253879_27255086
transcript_39107.known	chr17	-	1958	6	FSM	ENSMUSG00000057789.15	ENSMUST00000237411.2	1958	6	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	53.687987483235	1613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTCGCCTGGCATCTTTA	NA	False	NA	-2	True	AATAAA	-18	NA	27247561	27238785	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_27240010_27240140_27240322_27241412_27241557_27241715_27241847_27244766_27244868_27247384
transcript_39111.known	chr17	-	902	5	FSM	ENSMUSG00000057789.15	ENSMUST00000143158.3	902	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	55.9793488708113	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCCACTAATTCCCAGAAAA	NA	False	NA	NA	False	NA	NA	NA	27247668	27239639	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_27239877_27241412_27241557_27241715_27241852_27244766_27244868_27247384
transcript_39119.nic	chr17	+	901	4	ISM	ENSMUSG00000048731.16	ENSMUST00000154731.3	1108	5	1969	0	-486	0	3prime_fragment	FALSE	canonical	2	10	junction_1	7.84573486395988	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCTGGGCTGTCTGTCCC	NA	False	NA	18	True	AATAAA	-19	NA	27251346	27255351	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_27251632_27251734_27251946_27253738_27253879_27255086
transcript_39122.known	chr17	+	2796	2	FSM	ENSMUSG00000079605.6	ENSMUST00000120016.3	2796	2	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	0	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTAGACTGGCTTGAGTGA	NA	False	NA	16	True	AATAAA	-24	NA	27192140	27195177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_27192289_27192529
transcript_39125.known	chr17	+	451	2	FSM	ENSMUSG00000048731.16	ENSMUST00000142141.3	451	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCGTAGCGCCGGTTAATA	NA	False	NA	22	True	AGTAAA	-14	NA	27236960	27241491	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_27237145_27241224
transcript_39126.known	chr17	+	1108	5	FSM	ENSMUSG00000048731.16	ENSMUST00000154731.3	1108	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	8.6421930087218	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCTGGGCTGTCTGTCCC	NA	False	NA	18	True	AATAAA	-19	NA	27249377	27255351	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_27249775_27251536_27251632_27251734_27251946_27253738_27253879_27255086
transcript_39127.known	chr17	+	8990	58	FSM	ENSMUSG00000042644.10	ENSMUST00000049308.9	8990	58	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_18	48.4846455023872	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCACAGGGTCATACTTCTG	NA	False	NA	16	True	AATAAA	-20	NA	27276277	27341197	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_27276649_27292071_27292143_27302503_27302626_27304062_27304150_27305812_27305972_27306119_27306219_27306564_27306649_27307925_27308073_27308235_27308332_27308589_27308641_27308803_27308947_27310284_27310385_27310466_27310628_27310787_27310930_27312148_27312311_27313768_27313942_27314437_27314558_27314860_27315044_27316935_27317188_27317287_27317433_27317947_27318090_27318573_27318774_27320078_27320209_27320556_27320615_27321740_27321907_27322806_27322972_27323047_27323123_27323498_27323625_27324467_27324591_27325179_27325381_27326203_27326456_27326583_27326710_27326790_27326917_27329453_27329575_27329804_27329996_27330171_27330321_27330437_27330547_27330638_27330730_27330830_27331001_27332464_27332640_27332717_27332900_27333053_27333255_27333368_27333480_27333820_27333917_27334001_27334104_27334188_27334276_27334646_27334758_27334859_27335053_27335145_27335272_27335582_27335756_27336139_27336305_27336706_27336900_27337330_27337436_27337518_27337647_27338188_27338355_27338841_27339003_27339904_27340067_27340433
transcript_39129.known	chr17	-	452	4	FSM	ENSMUSG00000024208.17	ENSMUST00000119227.3	452	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1369.72560106841	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTCCTGGTTTGGAACT	1961	False	NA	-5	True	AATAAA	-17	NA	27352876	27341643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_27341815_27344120_27344191_27344857_27344906_27352713
transcript_39130.known	chr17	-	428	4	FSM	ENSMUSG00000024208.17	ENSMUST00000118613.8	428	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	1369.25681383085	570	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCCTGGTTTGGAACTCA	2234	False	NA	-3	True	AATAAA	-19	NA	27352603	27341641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_27341815_27344120_27344191_27344857_27344933_27352493
transcript_39137.known	chr17	-	500	4	FSM	ENSMUSG00000024208.17	ENSMUST00000025045.15	500	4	0	0	0	0	multi-exon	TRUE	canonical	3	2713	junction_1	153.559977424675	19824	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTTTGGAACTCATTCAT	1947	False	NA	2	True	AATAAA	-24	NA	27352890	27341636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_27341815_27344120_27344191_27344857_27344933_27352713
transcript_39138.known	chr17	-	2627	9	FSM	ENSMUSG00000044857.9	ENSMUST00000055117.9	2627	9	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_7	66.5158580715907	175	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTTTTATTTGTGGTGC	7993	False	NA	-1	True	AATAAA	-19	NA	27423443	27408573	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_27409765_27411905_27412009_27412076_27412179_27412811_27412958_27414298_27414379_27415109_27415187_27418336_27418413_27420610_27420652_27422632
transcript_39141.nnic	chr17	+	900	3	Antisense	novelGene_ENSMUSG00000118503.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0.5	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGCTTGGTTACGGTGTT	NA	False	NA	NA	False	NA	NA	NA	27431111	27433085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr17_+_27431202_27431362_27431525_27432437
transcript_39144.nnic	chr17	+	1059	2	Antisense	novelGene_ENSMUSG00000118503.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	0	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGCTTGGTTACGGTGTT	NA	False	NA	NA	False	NA	NA	NA	27431113	27433085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr17_+_27431525_27432437
transcript_39166.nnic	chr17	+	1113	3	Antisense	novelGene_ENSMUSG00000117916.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_2	1	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTGGCTCCAGCCTGGTG	NA	False	NA	NA	False	AAAACA	-24	NA	27449588	27455728	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr17_+_27449685_27453543_27453685_27454852
transcript_39171.nnic	chr17	+	263	3	Antisense	novelGene_ENSMUSG00000117916.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_1	6.5	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCTGTGTTCCATCTTCC	NA	False	NA	5	True	AATAAA	-17	NA	27457747	27458368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr17_+_27457828_27457913_27457979_27458250
transcript_39176.nnic	chr17	-	772	3	NNC	ENSMUSG00000117916.2	novel	2149	2	NA	NA	-32	4	at_least_one_novel_splicesite	TRUE	canonical	1	3	junction_1	34.5	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCCGACTTGGGTTTTTT	6217	False	NA	-5	True	NA	NA	NA	27461665	27454044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_27454490_27455902_27456112_27461547
transcript_39183.known	chr17	-	2149	2	FSM	ENSMUSG00000117916.2	ENSMUST00000235429.2	2149	2	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	0	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATACTCCGACTTGGGTT	6249	False	NA	-9	True	NA	NA	NA	27461633	27454048	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_27456112_27461547
transcript_39196.known	chr17	+	346	1	FSM	ENSMUSG00000082741.3	ENSMUST00000119573.3	346	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGAAAGTTTTCCTTTAA	NA	False	NA	NA	False	NA	NA	NA	27749040	27749386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_27749000_27749400
transcript_39223.known	chr17	+	916	5	FSM	ENSMUSG00000046711.17	ENSMUST00000117254.9	916	5	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_4	2003.13017550033	565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTAGGATGATGTTGGCT	NA	False	NA	NA	False	NA	NA	NA	27775636	27782008	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_27775686_27778506_27778645_27779901_27779986_27780434_27780486_27781414
transcript_39227.known	chr17	+	706	5	FSM	ENSMUSG00000046711.17	ENSMUST00000231796.2	706	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2239.01021659125	850	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCCGTAGAGGGTCCTGG	NA	False	NA	NA	False	NA	NA	NA	27775668	27781782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_27775686_27778506_27778678_27779889_27779986_27780434_27780486_27781411
transcript_39229.known	chr17	+	917	5	FSM	ENSMUSG00000046711.17	ENSMUST00000232552.2	917	5	0	0	0	0	multi-exon	FALSE	canonical	3	1035	junction_1	1979.76797882984	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCTCCTGCCCCACCCT	NA	False	NA	NA	False	NA	NA	NA	27775614	27781946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_27775724_27778506_27778645_27779901_27779986_27780434_27780486_27781411
transcript_39233.known	chr17	+	524	5	FSM	ENSMUSG00000046711.17	ENSMUST00000231243.2	524	5	0	0	0	0	multi-exon	FALSE	canonical	1	21	junction_2	2499.46579292456	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCACTGCACACTACCG	NA	False	NA	NA	False	NA	NA	NA	27775641	27781551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_27775724_27778506_27778678_27779905_27779986_27780434_27780486_27781411
transcript_39238.known	chr17	-	545	5	FSM	ENSMUSG00000062753.15	ENSMUST00000232203.2	545	5	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_2	100.906825834529	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTGCCCTCCTTGGGTGG	NA	False	NA	47	True	AATAAA	-16	NA	27784650	27782744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_27782991_27783122_27783190_27783358_27783385_27783535_27783725_27784633
transcript_39240.known	chr17	-	992	5	FSM	ENSMUSG00000062753.15	ENSMUST00000145183.3	992	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	110.020452644043	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCCTCCTTGGGTGGAC	NA	False	NA	49	True	AATAAA	-18	NA	27784641	27782742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_27782991_27783122_27783229_27783358_27783385_27783535_27783725_27784218
transcript_39242.known	chr17	-	862	5	FSM	ENSMUSG00000062753.15	ENSMUST00000154473.9	862	5	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_4	17.0934929139717	1117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAACAAGGGGAGGTGGCC	NA	False	NA	NA	False	NA	NA	NA	27784730	27782546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_27782991_27783122_27783229_27783358_27783385_27783535_27783725_27784633
transcript_39244.known	chr17	-	563	5	FSM	ENSMUSG00000062753.15	ENSMUST00000231753.2	563	5	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_3	99.6092365195116	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGTTGCCCTCCTTGGGT	NA	False	NA	45	True	AATAAA	-14	NA	27784691	27782746	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_27782991_27783122_27783229_27783358_27783385_27783595_27783725_27784633
transcript_39258.known	chr17	-	608	4	FSM	ENSMUSG00000062753.15	ENSMUST00000231948.2	608	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	112.499876543142	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTGCCCTCCTTGGGTGG	NA	False	NA	47	True	AATAAA	-16	NA	27784700	27782744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_27782991_27783122_27783229_27783535_27783725_27784633
transcript_39261.known	chr17	-	677	4	FSM	ENSMUSG00000062753.15	ENSMUST00000080190.9	677	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	115.750689942748	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCCTCCTTGGGTGGAC	NA	False	NA	49	True	AATAAA	-18	NA	27784682	27782742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_27782991_27783122_27783314_27783535_27783725_27784633
transcript_39263.known	chr17	-	785	4	FSM	ENSMUSG00000062753.15	ENSMUST00000138728.2	785	4	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_3	19.7371617907833	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGTTGCCCTCCTTGGGT	NA	False	NA	45	True	AATAAA	-14	NA	27784723	27782746	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_27782991_27783122_27783385_27783535_27783725_27784633
transcript_39272.known	chr17	+	2001	5	FSM	ENSMUSG00000046711.17	ENSMUST00000231874.2	2001	5	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_1	2057.89800221002	1652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCTCTGGTGTAAGGAGC	NA	False	NA	NA	False	AATAAA	-22	NA	27775577	27782643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_27776041_27778506_27778678_27779901_27779986_27780434_27780486_27781411
transcript_39283.known	chr17	-	644	6	FSM	ENSMUSG00000052146.17	ENSMUST00000114881.9	644	6	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_5	2469.22413725445	4009	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTCCACTTGTGTATGTT	NA	False	NA	NA	False	AATAAA	-14	NA	27855643	27849397	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_27849481_27850173_27850230_27851252_27851331_27853045_27853218_27853299_27853450_27855538
transcript_39285.known	chr17	-	2223	5	FSM	ENSMUSG00000024213.15	ENSMUST00000025050.13	2223	5	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_4	16.1458198924675	190	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTTTGTTCCATGTCAG	NA	False	NA	-18	True	AATAAA	-23	NA	27842469	27798355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_27799929_27800981_27801067_27802185_27802231_27815697_27815809_27842060
transcript_39288.known	chr17	+	388	2	FSM	ENSMUSG00000087387.3	ENSMUST00000133274.3	388	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTCTGCTCTCCTTTGTG	6340	False	NA	NA	False	CATAAA	-17	NA	27854316	27855842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_27854406_27855543
transcript_39289.known	chr17	-	887	6	FSM	ENSMUSG00000052146.17	ENSMUST00000114882.9	887	6	0	0	0	0	multi-exon	FALSE	canonical	3	4719	junction_5	828.025700084243	146037	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTGTATGTTCTGTAG	NA	False	NA	NA	False	AATAAA	-20	NA	27854519	27849391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_27849481_27850173_27850230_27851252_27851331_27853045_27853218_27853299_27853450_27854177
transcript_39290.known	chr17	-	522	5	FSM	ENSMUSG00000052146.17	ENSMUST00000025052.14	522	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2686.58356467838	869	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCACTTGTGTATGTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	27854214	27849395	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_27849481_27851252_27851331_27853045_27853218_27853299_27853450_27854177
transcript_39291.known	chr17	-	498	5	FSM	ENSMUSG00000052146.17	ENSMUST00000178774.3	498	5	0	0	0	0	multi-exon	FALSE	canonical	3	4850	junction_1	728.093915645502	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGGAGTTTATGTTGTAT	NA	False	NA	NA	False	NA	NA	NA	27853449	27849438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_27849481_27850173_27850230_27851252_27851331_27853045_27853218_27853299
transcript_39292.known	chr17	+	4176	10	FSM	ENSMUSG00000040276.16	ENSMUST00000045896.11	4176	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	19.6078845315467	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGGCTGGACTTGTCACC	NA	False	NA	NA	False	GATAAA	-16	NA	27874521	27930085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_27874734_27920799_27920916_27921673_27921831_27923818_27924055_27924598_27924755_27924890_27925067_27925967_27926089_27926192_27926321_27926853_27927042_27927399
transcript_39294.known	chr17	+	4209	10	FSM	ENSMUSG00000040276.16	ENSMUST00000231669.2	4209	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	19.4193488848393	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGGCTGGACTTGTCACC	NA	False	NA	NA	False	GATAAA	-16	NA	27904154	27930085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_27904400_27920799_27920916_27921673_27921831_27923818_27924055_27924598_27924755_27924890_27925067_27925967_27926089_27926192_27926321_27926853_27927042_27927399
transcript_39295.known	chr17	+	1857	10	FSM	ENSMUSG00000040276.16	ENSMUST00000114873.8	1857	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	19.6078845315467	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AACAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	TTTAAA	-12	NA	27874482	27927633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_27874734_27920705_27920916_27921673_27921831_27923818_27924055_27924598_27924755_27924890_27925067_27925967_27926089_27926192_27926321_27926853_27927042_27927399
transcript_39296.known	chr17	+	1368	8	FSM	ENSMUSG00000040276.16	ENSMUST00000231350.2	1368	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	17.3511159436445	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGCGTTTGCAGCCTACC	NA	False	NA	NA	False	TTTAAA	-45	NA	27923430	27927666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_27923527_27923818_27924055_27924598_27924755_27924890_27925067_27925967_27926089_27926192_27926321_27926853_27927042_27927399
transcript_39298.nic	chr17	+	881	5	ISM	ENSMUSG00000040276.16	ENSMUST00000231350.2	1368	8	1426	33	234	0	3prime_fragment	FALSE	canonical	3	43	junction_3	6.05702071979286	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AACAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	TTTAAA	-12	NA	27924856	27927633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_27925067_27925967_27926089_27926192_27926321_27926853_27927042_27927399
transcript_39301.known	chr17	-	1045	3	FSM	ENSMUSG00000024215.15	ENSMUST00000127622.3	1045	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTAGGTCCTCCAGTGTCT	NA	False	NA	NA	False	AATAAA	-14	NA	27936693	27933424	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_27934021_27936142_27936290_27936391
transcript_39302.known	chr17	-	3892	5	FSM	ENSMUSG00000056692.14	ENSMUST00000114863.10	3892	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_4	5.43139024560011	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGTGCGTGTGATTCT	NA	False	NA	-1	True	ATTAAA	-34	NA	28039599	27970208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_27972970_27986884_27987214_28005044_28005243_28012882_28013038_28039150
transcript_39305.known	chr17	+	984	7	FSM	ENSMUSG00000024217.11	ENSMUST00000232873.2	984	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	752.710306529382	21182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGTCCCTGTCCCTTGCA	NA	False	NA	21	True	AATAAA	-23	NA	28057123	28070942	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_28057234_28058947_28059144_28059437_28059481_28061243_28061353_28064156_28064247_28066926_28067032_28070611
transcript_39308.known	chr17	+	882	6	FSM	ENSMUSG00000024217.11	ENSMUST00000233657.2	882	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	825.321658506549	776	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAAGCGTGTCCCTGTCCC	NA	False	NA	16	True	AATAAA	-18	NA	28059128	28070937	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_28059338_28059437_28059481_28061243_28061353_28064156_28064247_28066926_28067032_28070611
transcript_39312.known	chr17	+	758	6	FSM	ENSMUSG00000024217.11	ENSMUST00000071006.9	758	6	0	0	0	0	multi-exon	FALSE	canonical	3	1664	junction_1	167.935225607971	5658	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCGTGTCCCTGTCCCTT	NA	False	NA	18	True	AATAAA	-20	NA	28059060	28070939	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_28059144_28059437_28059481_28061243_28061353_28064156_28064247_28066926_28067032_28070611
transcript_39313.known	chr17	+	6107	4	FSM	ENSMUSG00000024217.11	ENSMUST00000137581.3	6107	4	0	0	0	0	multi-exon	FALSE	canonical	3	1664	junction_1	189.049082398079	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGTCCCTGTCCCTTGCA	NA	False	NA	21	True	AATAAA	-23	NA	28059057	28070942	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_28059144_28059437_28061353_28064156_28064247_28066926
transcript_39314.known	chr17	+	1013	6	FSM	ENSMUSG00000024217.11	ENSMUST00000233752.2	1013	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	791.835184871195	829	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGTCCCTGTCCCTTGCA	NA	False	NA	21	True	AATAAA	-23	NA	28059108	28070942	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_28059144_28059437_28059781_28061243_28061353_28064156_28064247_28066926_28067032_28070611
transcript_39315.known	chr17	+	8634	21	FSM	ENSMUSG00000039512.13	ENSMUST00000114849.3	8634	21	0	0	0	0	multi-exon	TRUE	canonical	3	66	junction_6	13.1601671721905	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTCCTCGTGTGTCTGTT	5785	False	NA	NA	False	ATTAAA	-16	NA	28075414	28119015	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_28075769_28095636_28095800_28095897_28095937_28096295_28096388_28098197_28098388_28098624_28098766_28099108_28099280_28100402_28100590_28102994_28103082_28103407_28103579_28103886_28104027_28104380_28104523_28104874_28105069_28105236_28106667_28108973_28109171_28112114_28112267_28112352_28112504_28113520_28113784_28114243_28114353_28114433_28114535_28114855
transcript_39317.known	chr17	-	3457	6	FSM	ENSMUSG00000024218.14	ENSMUST00000233439.2	3457	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	76.001578930967	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACAGGGTTTCTCTGTGTTG	NA	False	NA	-7	True	AATAAA	-21	NA	28128818	28120099	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_28120764_28121501_28121599_28122074_28122163_28124235_28124385_28124893_28125009_28126474
transcript_39322.known	chr17	-	1496	1	FSM	ENSMUSG00000024218.14	ENSMUST00000233306.2	1496	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGGAAAAAAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	28126709	28125213	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_28125200_28126700
transcript_39323.known	chr17	-	2207	6	FSM	ENSMUSG00000024218.14	ENSMUST00000114848.8	2207	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	61.2483469164679	781	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTTCTCTGTGTTGCCCT	NA	False	NA	-3	True	AATAAA	-25	NA	28128216	28120095	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_28120764_28121501_28121599_28122074_28122163_28124235_28124385_28126474_28127218_28127754
transcript_39324.known	chr17	-	1220	5	FSM	ENSMUSG00000024218.14	ENSMUST00000025057.5	1220	5	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_3	9.9373034571759	651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACAGGGTTTCTCTGTGT	NA	False	NA	-9	True	AATAAA	-19	NA	28126698	28120101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_28120764_28121501_28121599_28122074_28122163_28124235_28124385_28126474
transcript_39325.known	chr17	-	1989	10	FSM	ENSMUSG00000062859.16	ENSMUST00000042692.13	1989	10	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_9	11.2787355915107	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCATTCTTCTTTGATGC	NA	False	NA	1	True	AATAAA	-20	NA	28299561	28285718	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_28286143_28286763_28286928_28288156_28288339_28288431_28288647_28289396_28289534_28290584_28290806_28293625_28293747_28296959_28297033_28298895_28299280_28299493
transcript_39326.known	chr17	-	1948	10	FSM	ENSMUSG00000062859.16	ENSMUST00000129046.9	1948	10	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_9	12.0349285902676	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGGCCATTCTTCTTTGAT	NA	False	NA	-1	True	AATAAA	-18	NA	28299577	28285720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_28286143_28286763_28286928_28288156_28288339_28288431_28288647_28289396_28289534_28290584_28290806_28293625_28293747_28296959_28297033_28298895_28299280_28299548
transcript_39328.known	chr17	-	1752	10	FSM	ENSMUSG00000062859.16	ENSMUST00000114836.9	1752	10	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_8	13.923955731396	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCATTCTTCTTTGATGC	NA	False	NA	1	True	AATAAA	-20	NA	28299561	28285718	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_28286143_28286763_28286928_28288156_28288339_28288431_28288647_28289396_28289534_28290584_28290806_28293625_28293747_28296959_28297033_28299132_28299280_28299493
transcript_39329.known	chr17	-	1743	10	FSM	ENSMUSG00000062859.16	ENSMUST00000043925.16	1743	10	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_9	14.4743280617618	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGACGGCCATTCTTCTT	NA	False	NA	-5	True	AATAAA	-14	NA	28299613	28285724	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_28286143_28286763_28286928_28288156_28288339_28288431_28288647_28289396_28289534_28290584_28290806_28293625_28293747_28296959_28297033_28299132_28299280_28299548
transcript_39330.known	chr17	-	1705	9	FSM	ENSMUSG00000062859.16	ENSMUST00000233898.2	1705	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	15.87253917935	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGACGGCCATTCTTCTT	NA	False	NA	-5	True	AATAAA	-14	NA	28298738	28285724	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_28286143_28286763_28286928_28288156_28288339_28288431_28288647_28289396_28289534_28290584_28290806_28293625_28293747_28296959_28297033_28298564
transcript_39333.known	chr17	-	1628	1	FSM	ENSMUSG00000085521.5	ENSMUST00000142461.2	1628	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	290	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAGGAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	28295651	28294023	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_28294000_28295700
transcript_39334.known	chr17	-	587	3	FSM	ENSMUSG00000062859.16	ENSMUST00000123628.2	587	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	27	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACAACTGGCCCAAACCC	NA	False	NA	-51	True	NA	NA	NA	28287450	28285770	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_28286143_28286763_28286928_28287399
transcript_39335.known	chr17	-	496	3	FSM	ENSMUSG00000117120.2	ENSMUST00000141806.3	496	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	20	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAGAAAGAAAGAAGGAGG	NA	False	NA	NA	False	NA	NA	NA	28299269	28295391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_28295441_28296959_28297033_28298895
transcript_39337.known	chr17	+	2864	14	FSM	ENSMUSG00000024220.15	ENSMUST00000073534.10	2864	14	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_10	10.6092512939298	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGGCTCCTCCATCATTT	NA	False	NA	4	True	AATAAA	-16	NA	28396102	28424860	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_28396500_28408770_28408927_28413939_28414021_28414121_28414200_28416747_28416948_28419084_28419202_28419412_28419489_28419981_28420108_28420234_28420415_28421088_28421323_28421408_28421573_28422059_28422225_28423428_28423543_28424084
transcript_39343.known	chr17	+	2277	11	FSM	ENSMUSG00000002257.9	ENSMUST00000002327.6	2277	11	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	14.7461859475595	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGCCCTTCCCTCCCTC	NA	False	NA	17	True	AATAAA	-22	NA	28426751	28447582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_28426913_28435938_28436080_28436574_28436761_28438718_28438956_28439050_28439198_28442645_28442755_28442861_28443161_28444818_28444986_28445074_28445274_28446780_28446872_28447042
transcript_39345.known	chr17	+	739	5	FSM	ENSMUSG00000002250.17	ENSMUST00000233761.2	739	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	2.48746859276655	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGTCCCATTCTGTCAGAG	NA	False	NA	NA	False	NA	NA	NA	28451747	28516261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_28451839_28455985_28456070_28505234_28505442_28514314_28514470_28516059
transcript_39346.nnic	chr17	-	467	2	Antisense	novelGene_ENSMUSG00000002250.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	12	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTATTTTCATTGTTGC	NA	False	NA	NA	False	AAAAAG	-39	NA	28518020	28515956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr17_-_28516116_28517712
transcript_39348.known	chr17	+	1433	4	FSM	ENSMUSG00000002250.17	ENSMUST00000123020.9	1433	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	2.62466929133727	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAACCAAGTTCTTATG	NA	False	NA	NA	False	NA	NA	NA	28451737	28515355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_28451839_28455985_28456070_28505234_28505442_28514314
transcript_39349.known	chr17	+	2025	10	FSM	ENSMUSG00000007570.17	ENSMUST00000114803.9	2025	10	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_4	20.9655802580218	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTGGTGGCTCAGCCCTG	306	False	NA	17	True	AATAAA	-19	NA	28532492	28545546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_28532857_28534572_28535162_28535832_28535878_28536131_28536198_28536441_28536586_28537006_28537131_28537302_28537382_28539763_28539831_28541619_28541746_28545125
transcript_3935.nnic	chr1	-	1604	10	NNC	ENSMUSG00000042349.14	novel	2867	21	NA	NA	1586	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	5.63279638028292	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCAGCTATGGTACCT	3514	False	NA	NA	False	AATAAA	-19	NA	131196695	131182338	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_131183076_131184623_131184696_131184853_131184961_131185637_131185735_131186918_131187021_131187742_131187783_131191009_131191087_131193375_131193492_131193611_131193688_131196515
transcript_39361.known	chr17	+	901	5	FSM	ENSMUSG00000037805.16	ENSMUST00000152665.3	901	5	0	0	0	0	multi-exon	FALSE	canonical	3	5482	junction_3	1346.05653205948	2514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCAGCCTTGGTGTGCCTG	NA	False	NA	-5	True	AATAAA	-14	NA	28547559	28550001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_28547860_28547940_28548022_28548347_28548497_28549498_28549672_28549803
transcript_39362.known	chr17	+	1022	5	FSM	ENSMUSG00000037805.16	ENSMUST00000150103.3	1022	5	0	0	0	0	multi-exon	FALSE	canonical	3	5482	junction_3	1550.72344004339	4927	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGCCTTGGTGTGCCTGT	NA	False	NA	-4	True	AATAAA	-15	NA	28547573	28550002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_28547593_28547784_28547860_28547940_28548497_28549498_28549672_28549803
transcript_39363.known	chr17	+	949	6	FSM	ENSMUSG00000037805.16	ENSMUST00000129935.8	949	6	0	0	0	0	multi-exon	FALSE	canonical	3	728	junction_3	2914.49848859113	10930	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547557	28550006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_28547593_28547784_28547860_28547940_28548255_28548347_28548497_28549498_28549672_28549803
transcript_39364.known	chr17	+	729	6	FSM	ENSMUSG00000037805.16	ENSMUST00000233427.2	729	6	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_1	3247.70076207769	7597	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547541	28550006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_28547593_28547787_28547860_28547940_28548022_28548347_28548497_28549498_28549672_28549803
transcript_39365.known	chr17	+	511	6	FSM	ENSMUSG00000037805.16	ENSMUST00000232867.2	511	6	0	0	0	0	multi-exon	FALSE	canonical	2	872	junction_4	2999.11700338616	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTGGTGTCCTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	28547570	28549883	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_28547593_28547784_28547860_28547940_28548022_28548347_28548497_28549567_28549672_28549803
transcript_39366.known	chr17	+	1202	4	FSM	ENSMUSG00000037805.16	ENSMUST00000232770.2	1202	4	0	0	0	0	multi-exon	FALSE	canonical	3	5482	junction_2	1519.39724891155	5213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547589	28550006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_28547860_28547940_28548497_28549498_28549672_28549803
transcript_39367.known	chr17	+	634	5	FSM	ENSMUSG00000037805.16	ENSMUST00000233937.2	634	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	3056.76147049455	799	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGCTGCCACTCAGCCTT	NA	False	NA	-15	True	AATAAA	-4	NA	28547543	28549991	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_28547593_28547784_28547860_28548347_28548497_28549498_28549672_28549803
transcript_39368.known	chr17	+	546	5	FSM	ENSMUSG00000037805.16	ENSMUST00000233895.2	546	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	3518.24309847969	682	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGCCTTGGTGTGCCTGT	NA	False	NA	-4	True	AATAAA	-15	NA	28547550	28550002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_28547593_28547784_28547860_28547940_28548022_28548347_28548497_28549803
transcript_39369.known	chr17	-	2585	13	FSM	ENSMUSG00000002249.22	ENSMUST00000156862.3	2585	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	2.49861072509416	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAGTTGTGCCATATGCAA	NA	False	NA	NA	False	ATTAAA	-19	NA	28569791	28550687	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_28551808_28551924_28552078_28552165_28552307_28552479_28552654_28552764_28552911_28553357_28553420_28553677_28553728_28553872_28554011_28554458_28554471_28555484_28555548_28559127_28559193_28560322_28560575_28569582
transcript_39371.known	chr17	-	1086	5	FSM	ENSMUSG00000037446.15	ENSMUST00000148188.9	1086	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.87082869338697	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCGGTAGTTTCTGGATTCA	NA	False	NA	NA	False	AATAAA	-22	NA	28577739	28570489	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_28570977_28572656_28572829_28575137_28575237_28575312_28575425_28577523
transcript_39372.known	chr17	-	3543	11	FSM	ENSMUSG00000024222.18	ENSMUST00000079413.11	3543	11	0	0	0	0	multi-exon	FALSE	canonical	2	296	junction_7	83.3980815127063	1153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATTGTTCATGGCTTTT	NA	False	NA	-11	True	AATAAA	-18	NA	28705123	28618067	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_28620126_28621582_28621823_28625058_28625245_28629483_28629568_28631007_28631099_28634842_28635000_28647325_28647441_28648194_28648338_28656965_28657111_28659901_28660028_28704925
transcript_39373.nic	chr17	-	2959	7	NIC	ENSMUSG00000024222.18	novel	3858	14	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_6	192.900377282046	1148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTCATTGTTCATGGCT	NA	False	NA	-14	True	AATAAA	-15	NA	28637514	28618070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_28620126_28621582_28621823_28625058_28625245_28629483_28629568_28631007_28631099_28634842_28635000_28637368
transcript_39374.nnic	chr17	-	2919	7	NNC	ENSMUSG00000024222.18	novel	3858	14	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_6	204.007080487146	1144	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTCATTGTTCATGGCT	NA	False	NA	-14	True	AATAAA	-15	NA	28637520	28618070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_28620126_28621582_28621823_28625058_28625245_28629483_28629568_28631007_28631099_28634842_28635000_28637414
transcript_39379.nnic	chr17	+	355	2	Genic_Genomic	ENSMUSG00000066170.8	novel	2679	1	NA	NA	-44	-692	multi-exon	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGGAAGATGGTGGACAT	NA	False	NA	NA	False	NA	NA	NA	28742222	28743629	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr17_+_28742341_28743392
transcript_3938.known	chr1	-	3533	22	FSM	ENSMUSG00000026425.16	ENSMUST00000186543.7	3533	22	0	0	0	0	multi-exon	TRUE	canonical	3	29	junction_1	23.367225143015	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTTGCCAGATCTCTTG	NA	False	NA	0	True	AATAAA	-26	NA	131455085	131222955	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_131223278_131224057_131224205_131226069_131226251_131228130_131228211_131238211_131238437_131244866_131244973_131247262_131247398_131248172_131248251_131252825_131252887_131259854_131259880_131261594_131261623_131264127_131264213_131272086_131272285_131273499_131273602_131277189_131277415_131283248_131283378_131284427_131284644_131291739_131291803_131339537_131339701_131364412_131364606_131452675_131453332_131454970
transcript_39380.known	chr17	-	671	2	FSM	ENSMUSG00000097714.2	ENSMUST00000180802.2	671	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGGCTCATGTGCTATAA	NA	False	NA	NA	False	ATTAAA	-15	NA	28742122	28741354	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_28741738_28741834
transcript_39382.known	chr17	+	522	3	FSM	ENSMUSG00000024224.6	ENSMUST00000025061.6	522	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCTGTCTGTTTGCCCTT	NA	False	NA	NA	False	ATTAAA	-14	NA	28768384	28771594	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_28768578_28769629_28769753_28771388
transcript_39383.nnic	chr17	-	573	4	NNC	ENSMUSG00000024225.6	novel	611	3	NA	NA	-8117	-3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	1.63299316185545	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCGTCTCTGCCTGTCCTT	NA	False	NA	NA	False	ATTAAA	-17	NA	28787857	28777186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_28777415_28777734_28777858_28779544_28779662_28787752
transcript_39385.known	chr17	+	1313	4	FSM	ENSMUSG00000062252.10	ENSMUST00000080780.8	1313	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.24721912892465	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTCAAGTGTCATCTTTA	8564	False	NA	NA	False	NA	NA	NA	28794626	28802567	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_28795387_28798904_28799142_28801953_28802000_28802297
transcript_39387.known	chr17	-	981	9	FSM	ENSMUSG00000004865.17	ENSMUST00000233129.2	981	9	0	0	0	0	multi-exon	FALSE	canonical	3	656	junction_8	93.865595401084	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGCTGCTGAGGCTTC	NA	False	NA	NA	False	AATAAA	-21	NA	28841425	28819677	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
transcript_39388.known	chr17	-	1002	8	FSM	ENSMUSG00000004865.17	ENSMUST00000232751.2	1002	8	0	0	0	0	multi-exon	FALSE	canonical	3	656	junction_7	99.9697913555564	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTAGAGTGTTTTTATTT	NA	False	NA	NA	False	AGTAAA	-20	NA	28841425	28821449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
transcript_39389.known	chr17	-	584	6	FSM	ENSMUSG00000004865.17	ENSMUST00000145023.3	584	6	0	0	0	0	multi-exon	FALSE	canonical	3	657	junction_3	112.59591466834	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAAAAATTATTCAGCAAG	NA	False	NA	NA	False	GGGGCT	-16	NA	28841042	28822430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950
transcript_39390.known	chr17	+	3548	12	FSM	ENSMUSG00000053436.16	ENSMUST00000062694.16	3548	12	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_9	36.7805643969117	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTTTCTCAGGTTTATT	5077	False	NA	12	True	AATAAA	-19	NA	28910315	28967379	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_28910830_28932747_28932878_28934356_28934416_28943717_28943830_28944466_28944497_28944770_28944819_28947330_28947446_28947877_28947950_28955984_28956065_28960761_28960841_28963956_28964131_28965244
transcript_39392.known	chr17	+	3562	12	FSM	ENSMUSG00000053436.16	ENSMUST00000004990.14	3562	12	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_9	126.485422019579	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTTTCTCAGGTTTATTC	5064	False	NA	13	True	AATAAA	-20	NA	28910302	28967380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_28910830_28932747_28932878_28934356_28934416_28943717_28943830_28944466_28944497_28944770_28944819_28947330_28947446_28947877_28947950_28959653_28959734_28960761_28960841_28963956_28964131_28965244
transcript_39396.known	chr17	+	2937	12	FSM	ENSMUSG00000004864.14	ENSMUST00000233984.2	2937	12	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_6	12.7227264607489	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATTATTATATCTAAGTA	NA	False	NA	NA	False	AATAAA	-19	NA	28988270	28999207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_28988503_28988984_28989115_28990131_28990191_28994227_28994337_28994527_28994558_28995108_28995157_28995275_28995391_28995475_28995548_28996455_28996536_28996696_28996776_28997050_28997228_28997401
transcript_39406.nnic	chr17	+	708	3	Antisense	novelGene_ENSMUSG00000117255.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	28	junction_2	31.5	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCCACACAGATGGAAAAGT	NA	False	NA	NA	False	NA	NA	NA	29004324	29019414	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr17_+_29004515_29016706_29016757_29018946
transcript_39409.nnic	chr17	+	764	3	Antisense	novelGene_ENSMUSG00000117255.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	31	junction_2	30	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCCACACAGATGGAAAAGT	NA	False	NA	NA	False	NA	NA	NA	29004324	29019414	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr17_+_29004515_29016706_29016813_29018946
transcript_3941.nnic	chr1	+	529	4	NNC	ENSMUSG00000055184.5	novel	2191	4	NA	NA	-1764	-837	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	17.2819751957543	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAACGTTTACTGTTTTA	NA	False	NA	13	True	AGTAAA	-26	NA	131453876	131466773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_131454002_131458391_131458470_131461546_131461672_131466572
transcript_39417.known	chr17	-	1019	3	FSM	ENSMUSG00000045378.6	ENSMUST00000051526.6	1019	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	5	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTCTGTGTGTCTCTTTT	6213	False	NA	2	True	AATAAA	-18	NA	29161238	29152957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_29153781_29160215_29160344_29161170
transcript_39419.known	chr17	+	4196	8	FSM	ENSMUSG00000005936.20	ENSMUST00000233197.2	4196	8	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_2	164.609370626217	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTTGTTATTTAATAGAA	NA	False	NA	NA	False	AATAAA	-16	NA	29171231	29188523	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_29171544_29176852_29177032_29180387_29180662_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
transcript_3942.known	chr1	+	2191	4	FSM	ENSMUSG00000055184.5	ENSMUST00000068613.5	2191	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	3.29983164553722	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAAAAAAAAGAATCT	NA	False	NA	NA	False	NA	NA	NA	131455640	131467610	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_131456591_131458391_131458470_131461546_131461672_131466572
transcript_39424.known	chr17	+	3853	7	FSM	ENSMUSG00000005936.20	ENSMUST00000118762.9	3853	7	0	0	0	0	multi-exon	FALSE	canonical	3	347	junction_1	75.1962247870345	374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTTGTTATTTAATAGAA	NA	False	NA	NA	False	AATAAA	-16	NA	29171395	29188523	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_29171544_29180387_29180662_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
transcript_39427.known	chr17	+	2162	7	FSM	ENSMUSG00000005936.20	ENSMUST00000117672.9	2162	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	191.759760000777	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCCTCTCTCCAGTATTG	NA	False	NA	2	True	AATAAA	-13	NA	29171654	29186903	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_29171732_29180387_29180662_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
transcript_39429.known	chr17	+	3530	6	FSM	ENSMUSG00000005936.20	ENSMUST00000232874.2	3530	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	212.274727652634	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTTGTTATTTAATAGAA	NA	False	NA	NA	False	AATAAA	-16	NA	29171444	29188523	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_29171544_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
transcript_3943.nnic	chr1	+	1297	3	NIC	ENSMUSG00000055184.5	novel	2191	4	NA	NA	-68	-837	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	18.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAACGTTTACTGTTTTA	NA	False	NA	13	True	AGTAAA	-26	NA	131455572	131466773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_131456591_131458391_131458470_131466572
transcript_39433.known	chr17	-	3354	14	FSM	ENSMUSG00000024006.18	ENSMUST00000119274.3	3354	14	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_13	173.563487011723	638	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTGGATTTCTTTTAT	NA	False	NA	2	True	AATAAA	-21	NA	29226969	29189853	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219119_29226684
transcript_39439.known	chr17	-	3351	14	FSM	ENSMUSG00000024006.18	ENSMUST00000009138.13	3351	14	0	0	0	0	multi-exon	FALSE	canonical	3	678	junction_3	53.1740471465247	557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTGGATTTCTTTTAT	NA	False	NA	2	True	AATAAA	-21	NA	29226969	29189853	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219116_29226684
transcript_39441.known	chr17	-	1298	8	FSM	ENSMUSG00000024006.18	ENSMUST00000232724.2	1298	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	321.459173146451	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATAGTCTCGGGCTGGCCA	NA	False	NA	NA	False	AATAAA	-4	NA	29226939	29199127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_29199497_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219119_29226684
transcript_39443.known	chr17	-	335	5	FSM	ENSMUSG00000024006.18	ENSMUST00000142366.3	335	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	280.945168137841	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCACGCTCGGAAGGAAACA	NA	False	NA	NA	False	TATAAA	-26	NA	29226709	29210375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_29210395_29211390_29211443_29217765_29217869_29218982_29219119_29226684
transcript_39445.known	chr17	-	627	4	FSM	ENSMUSG00000024006.18	ENSMUST00000232723.2	627	4	0	0	0	0	multi-exon	FALSE	canonical	3	701	junction_1	11.2644968324772	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGACATGTTCACTTCTCTT	NA	False	NA	NA	False	AATATA	-15	NA	29226886	29210154	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_29210395_29211390_29211443_29218982_29219116_29226684
transcript_39447.known	chr17	-	2767	2	FSM	ENSMUSG00000024006.18	ENSMUST00000145298.2	2767	2	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAACAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	29226870	29216537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_29219119_29226684
transcript_39450.known	chr17	-	820	1	FSM	ENSMUSG00000024006.18	ENSMUST00000233723.2	820	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAACAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	29226841	29226021	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_29226000_29226800
transcript_39457.known	chr17	+	2618	6	FSM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	0	0	0	0	multi-exon	FALSE	canonical	3	1420	junction_1	257.831728070849	24168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGGAGTATATTTTTATC	NA	False	NA	18	True	ATTAAA	-20	NA	29251601	29262347	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
transcript_39458.known	chr17	+	2594	7	FSM	ENSMUSG00000071172.14	ENSMUST00000037776.16	2594	7	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_4	890.897051042125	3050	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGTTGTGTCTAGAAGGT	NA	False	NA	15	True	AATAAA	-17	NA	29251605	29261871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29258427_29258884_29259748_29259788_29260180_29260268_29260357
transcript_39459.known	chr17	+	4010	4	FSM	ENSMUSG00000071172.14	ENSMUST00000147265.9	4010	4	0	0	0	0	multi-exon	FALSE	canonical	3	1420	junction_1	325.271510519374	708	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTAGTAGTCAGTCGAGCG	NA	False	NA	15	True	AATAAA	-15	NA	29251622	29261217	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_29251761_29255214_29255423_29257463_29260268_29260357
transcript_39460.known	chr17	+	319	4	FSM	ENSMUSG00000071172.14	ENSMUST00000233127.2	319	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	873.648416444256	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATCACAAGCCGTCTCGA	NA	False	NA	NA	False	NA	NA	NA	29251662	29260227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_29251761_29257463_29257599_29259748_29259788_29260180
transcript_39462.known	chr17	+	1162	3	FSM	ENSMUSG00000117007.2	ENSMUST00000233472.2	1162	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGCAGACTGGTAAGCAAA	4702	False	NA	NA	False	NA	NA	NA	29273643	29278729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_29273838_29275356_29275414_29277818
transcript_39464.known	chr17	+	1125	3	FSM	ENSMUSG00000117007.2	ENSMUST00000233006.2	1125	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	3.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAGCAAACCTGCAGACT	1609	False	NA	NA	False	NA	NA	NA	29275833	29278719	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_29275960_29276834_29276933_29277818
transcript_39467.nnic	chr17	+	1473	3	NNC	ENSMUSG00000117007.2	novel	1247	3	NA	NA	257	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAGCAAACCTGCAGACT	1866	False	NA	NA	False	NA	NA	NA	29276090	29278719	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_29276565_29276834_29276933_29277818
transcript_39469.known	chr17	-	1437	2	FSM	ENSMUSG00000085912.3	ENSMUST00000233478.2	1437	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTAGCTCCATCATTGCCTT	NA	False	NA	NA	False	NA	NA	NA	29291773	29278024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_29279333_29291644
transcript_39470.known	chr17	-	1453	2	FSM	ENSMUSG00000085912.3	ENSMUST00000232856.2	1453	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACGTAGCTCCATCATTGC	NA	False	NA	NA	False	NA	NA	NA	29292773	29278027	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_29279333_29292625
transcript_39471.known	chr17	-	1389	2	FSM	ENSMUSG00000085912.3	ENSMUST00000232704.2	1389	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGTAGCTCCATCATTGCC	NA	False	NA	NA	False	NA	NA	NA	29291879	29278026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_29279333_29291796
transcript_39472.known	chr17	-	1433	2	FSM	ENSMUSG00000085912.3	ENSMUST00000233135.2	1433	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACGTAGCTCCATCATTGC	NA	False	NA	NA	False	NA	NA	NA	29291821	29278027	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_29279333_29291693
transcript_39475.known	chr17	-	3218	2	FSM	ENSMUSG00000085912.3	ENSMUST00000133221.3	3218	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCCAAGCCACCCTCGAC	NA	False	NA	NA	False	CATAAA	-1	NA	29298153	29276403	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_29279333_29297864
transcript_3948.known	chr1	+	6900	13	FSM	ENSMUSG00000042251.13	ENSMUST00000112393.9	6900	13	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	6.31741420378799	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGATGTTCATGGGCCAG	NA	False	NA	NA	False	AATAAA	-10	NA	131725118	131749199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_131725325_131726333_131726421_131728831_131729065_131729463_131729551_131730038_131730173_131730457_131730578_131731789_131731866_131732324_131732387_131732630_131732710_131734636_131734709_131739772_131739942_131741628_131741729_131743724
transcript_39485.known	chr17	+	958	1	FSM	ENSMUSG00000023067.15	ENSMUST00000232979.2	958	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCCAGTCTCTGCTTTAT	1854	False	NA	NA	False	ACTAAA	-19	NA	29309949	29310907	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_29309900_29310900
transcript_39486.known	chr17	+	1913	3	FSM	ENSMUSG00000023067.15	ENSMUST00000023829.8	1913	3	0	0	0	0	multi-exon	FALSE	canonical	3	1159	junction_2	73.5	4893	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATGTCTTGTCATTAGA	4647	False	NA	24	True	NA	NA	NA	29312742	29319696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_29312836_29317370_29317812_29318317
transcript_39489.known	chr17	-	333	1	FSM	ENSMUSG00000067575.6	ENSMUST00000147311.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5164	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	NA	False	NA	NA	False	NA	NA	NA	29356278	29355945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_29355900_29356300
transcript_39490.known	chr17	-	5708	21	FSM	ENSMUSG00000024008.17	ENSMUST00000024805.15	5708	21	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_14	46.1512730051946	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGTCACTCCCATGCTC	8347	False	NA	NA	False	AGTAAA	-28	NA	29457141	29374529	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_29378215_29378925_29379000_29379292_29379351_29380083_29380187_29380392_29380521_29381226_29381409_29383647_29383695_29385691_29385754_29388378_29388433_29392298_29392375_29395135_29395178_29402896_29403002_29407266_29407371_29421478_29421543_29423662_29423723_29428397_29428475_29428663_29428704_29430621_29430726_29444164_29444212_29445166_29445208_29456586
transcript_39491.nnic	chr17	-	2534	13	NNC	ENSMUSG00000024008.17	novel	2332	12	NA	NA	-1535	0	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_12	27.4969695299925	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATAGACCCCCCCTCTCC	6589	False	NA	-9	True	AGTAAA	-14	NA	29404612	29376889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_29378215_29378925_29379000_29379292_29379351_29380083_29380187_29380392_29380521_29381226_29381409_29383647_29383695_29385691_29385754_29388378_29388433_29392298_29392375_29395135_29395178_29402896_29403002_29404334
transcript_39497.nnic	chr17	-	425	4	NNC	ENSMUSG00000024008.17	novel	1144	14	NA	NA	-1459	-3882	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_3	42.5519290592879	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGATGCTCCAGGGGTGG	6665	False	NA	NA	False	NA	NA	NA	29404536	29392298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_29392375_29395135_29395178_29402896_29403002_29404334
transcript_39498.known	chr17	-	2332	12	FSM	ENSMUSG00000024008.17	ENSMUST00000126993.8	2332	12	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_8	10.8025096563731	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATAGACCCCCCCTCTCC	8124	False	NA	-9	True	AGTAAA	-14	NA	29403077	29376889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_29378215_29378925_29379000_29379292_29379351_29380083_29380187_29380392_29380521_29381226_29381409_29383647_29383695_29385691_29385754_29388378_29388433_29392298_29392375_29395135_29395178_29402896
transcript_39501.known	chr17	-	1476	4	FSM	ENSMUSG00000024007.16	ENSMUST00000135123.3	1476	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	716.343182808042	1204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTTGTGGTCTAGTAT	9927	False	NA	-28	True	AATAAA	-19	NA	29482922	29469805	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_29470700_29471223_29471293_29480710_29481147_29482845
transcript_39502.known	chr17	-	1462	4	FSM	ENSMUSG00000024007.16	ENSMUST00000024802.10	1462	4	0	0	0	0	multi-exon	FALSE	canonical	3	1356	junction_1	125.889722464633	6492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCGGCCTTTTCTCTTTT	9689	False	NA	1	True	NA	NA	NA	29483160	29469776	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_29470700_29471223_29471293_29480710_29480866_29482845
transcript_39505.known	chr17	+	2756	9	FSM	ENSMUSG00000052712.18	ENSMUST00000234377.2	2756	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	115.461844346953	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTCTACCTTCTTACTGG	484	False	NA	18	True	NA	NA	NA	29487934	29521864	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_29487977_29496830_29496922_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520212
transcript_39506.known	chr17	+	1270	9	FSM	ENSMUSG00000052712.18	ENSMUST00000234028.2	1270	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	118.386813032533	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCATGGGTTGGTTGCTTA	484	False	NA	14	True	AATAAA	-15	NA	29487934	29520498	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_29487977_29496830_29496922_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515536_29515664_29517615_29517740_29520329
transcript_39509.known	chr17	+	1435	9	FSM	ENSMUSG00000052712.18	ENSMUST00000149405.4	1435	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	116.357208629289	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTGGTTGCTTAGTTAC	-23	True	NA	19	True	AATAAA	-20	NA	29493048	29520503	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_29493248_29496830_29496922_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
transcript_39511.known	chr17	+	1148	8	FSM	ENSMUSG00000052712.18	ENSMUST00000120346.9	1148	8	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_7	117.328424448952	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCATGGGTTGGTTGCTT	484	False	NA	13	True	AATAAA	-14	NA	29487934	29520497	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_29487977_29496830_29496922_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515533_29515664_29520329
transcript_39512.known	chr17	+	1073	8	FSM	ENSMUSG00000052712.18	ENSMUST00000235114.2	1073	8	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	114.986245850075	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGCATGGGTTGGTTGCT	468	False	NA	12	True	AATAAA	-13	NA	29487918	29520496	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_29487977_29496830_29496922_29501033_29501242_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
transcript_39513.known	chr17	+	13859	8	FSM	ENSMUSG00000052712.18	ENSMUST00000234711.2	13859	8	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	113.402479906656	741	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAAAATCTTTGTTTGTT	348	False	NA	NA	False	ACTAAA	-15	NA	29487798	29533039	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_29487977_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
transcript_39518.nnic	chr17	+	1036	7	NIC	ENSMUSG00000052712.18	novel	1073	8	NA	NA	-11	0	combination_of_known_splicesites	FALSE	canonical	3	24	junction_2	129.043920171906	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGGGTTGGTTGCTTAG	300	False	NA	15	True	AATAAA	-16	NA	29487750	29520499	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_29487977_29496830_29496922_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
transcript_39522.known	chr17	+	773	6	FSM	ENSMUSG00000052712.18	ENSMUST00000235050.2	773	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	140.841187157735	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTGGTTGCTTAGTTAC	476	False	NA	19	True	AATAAA	-20	NA	29487926	29520503	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_29487977_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
transcript_39525.known	chr17	+	483	1	FSM	ENSMUSG00000094326.2	ENSMUST00000178657.2	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTACACAAAGAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	29527111	29527594	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_29527100_29527600
transcript_39527.known	chr17	-	1652	13	FSM	ENSMUSG00000024012.19	ENSMUST00000234416.2	1652	13	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_11	417.184478245403	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTGCAAGCCTCTTAT	NA	False	NA	-9	True	AATAAA	-21	NA	29566526	29551049	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_29551753_29552487_29552564_29552748_29552817_29552931_29552980_29555191_29555286_29557715_29557776_29558764_29558817_29559041_29559100_29559394_29559473_29559764_29559872_29560038_29560176_29561796_29561882_29566440
transcript_39529.known	chr17	-	1952	12	FSM	ENSMUSG00000024012.19	ENSMUST00000095427.12	1952	12	0	0	0	0	multi-exon	FALSE	canonical	3	492	junction_4	200.604458475704	458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCAAGCCTCTTATTTAT	NA	False	NA	-5	True	AATAAA	-25	NA	29566908	29551045	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_29551753_29552487_29552564_29552748_29552817_29552931_29552980_29555140_29555286_29557715_29557776_29558764_29558817_29559041_29559100_29559394_29559473_29559764_29559872_29561796_29561882_29566440
transcript_3953.known	chr1	+	4697	11	FSM	ENSMUSG00000013275.10	ENSMUST00000086559.7	4697	11	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_4	13.4402380931292	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTATCCCTGTGTGTCT	5202	False	NA	23	True	AATAAA	-20	NA	131755714	131776603	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_131756132_131757748_131758729_131766852_131766961_131767914_131767987_131768592_131768738_131768865_131769013_131769722_131769871_131770686_131770767_131771656_131771792_131772075_131772225_131774287
transcript_39530.known	chr17	-	1897	12	FSM	ENSMUSG00000024012.19	ENSMUST00000118366.9	1897	12	0	0	0	0	multi-exon	FALSE	canonical	3	643	junction_4	160.665917948029	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTGCAAGCCTCTTAT	NA	False	NA	-9	True	AATAAA	-21	NA	29566908	29551049	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_29551753_29552487_29552564_29552748_29552817_29552931_29552980_29555191_29555286_29557715_29557776_29558764_29558817_29559041_29559100_29559394_29559473_29559764_29559872_29561796_29561882_29566440
transcript_39532.known	chr17	+	1578	5	FSM	ENSMUSG00000024014.9	ENSMUST00000234294.2	1578	5	0	0	0	0	multi-exon	FALSE	canonical	3	1677	junction_3	119.340636415263	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACAAAAAACAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29710278	29714419	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_29710406_29710493_29710545_29710638_29711006_29712695_29712873_29713563
transcript_39538.known	chr17	-	1161	2	FSM	ENSMUSG00000097125.3	ENSMUST00000235107.2	1161	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCCGGCTCTTCCTTTAA	8120	False	NA	NA	False	NA	NA	NA	29683129	29681592	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_29682631_29683006
transcript_39540.known	chr17	+	1794	3	FSM	ENSMUSG00000024014.9	ENSMUST00000234665.2	1794	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	939.5	2332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTTTGAGTTTTCCATT	NA	False	NA	13	True	AATAAA	-14	NA	29712010	29715082	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_29712109_29712695_29712873_29713563
transcript_39541.known	chr17	+	3595	13	FSM	ENSMUSG00000042203.9	ENSMUST00000048677.9	3595	13	0	0	0	0	multi-exon	TRUE	canonical	3	108	junction_11	15.481844205391	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGGGGCTTTGGTTTCCTG	NA	False	NA	11	True	AATAAA	-17	NA	29768758	29825869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_29768969_29783405_29783463_29787365_29787674_29789560_29789741_29790638_29790710_29791943_29792073_29794129_29794196_29797802_29797918_29813650_29813758_29814821_29814898_29818812_29818941_29819119_29819216_29823817
transcript_39545.nnic	chr17	+	1986	9	NNC	ENSMUSG00000042203.9	novel	3595	13	NA	NA	-12	-22088	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_8	44.8857925740428	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCATATGTATTTATGTATA	NA	False	NA	NA	False	AATAAA	-24	NA	29768746	29803780	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_29768969_29783405_29783463_29787365_29787674_29789560_29789741_29790638_29790710_29791943_29792073_29794129_29794196_29797802_29797918_29802942
transcript_39546.known	chr17	-	913	3	FSM	ENSMUSG00000079580.10	ENSMUST00000234979.2	913	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAGAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	29768645	29745000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_29745734_29764458_29764551_29768557
transcript_39548.known	chr17	-	1328	2	FSM	ENSMUSG00000079580.10	ENSMUST00000234718.2	1328	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAACATTCTTTAGTTT	NA	False	NA	NA	False	NA	NA	NA	29769136	29744984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_29745734_29768557
transcript_39549.known	chr17	-	311	1	FSM	ENSMUSG00000117376.2	ENSMUST00000234617.2	311	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTCTCTTTCCTTGGGTTC	8604	False	NA	NA	False	AATAAA	-44	NA	29833744	29833433	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_29833400_29833700
transcript_39550.known	chr17	+	6380	24	FSM	ENSMUSG00000024019.19	ENSMUST00000024816.13	6380	24	0	0	0	0	multi-exon	TRUE	canonical	3	368	junction_15	33.7979652859003	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGTTTCTCTCTGATGT	NA	False	NA	28	True	AATAAA	-30	NA	29879568	29924953	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_29879746_29882145_29882281_29893112_29893265_29895104_29895264_29897963_29898057_29899562_29899635_29900891_29900987_29901095_29901169_29904824_29905024_29906009_29906129_29908868_29908966_29909281_29909415_29910218_29910399_29913221_29913279_29913758_29913817_29914399_29914469_29916057_29916190_29916922_29917046_29917611_29917704_29918193_29918263_29919207_29919256_29919944_29920058_29920458_29920568_29921127
transcript_39557.known	chr17	+	1780	9	FSM	ENSMUSG00000090083.12	ENSMUST00000234362.2	1780	9	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_3	87.2496418330757	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTGCTCAGCTGGGCTTC	NA	False	NA	16	True	AATAAA	-15	NA	29833941	29860623	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_29834053_29840482_29840612_29845479_29845817_29845920_29846224_29847933_29847997_29850644_29850735_29853634_29853743_29854791_29854997_29860189
transcript_3956.known	chr1	+	1226	6	FSM	ENSMUSG00000026433.14	ENSMUST00000027693.8	1226	6	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	27.6506781110337	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGGTTGTGATGCTGGG	NA	False	NA	15	True	ATTAAA	-17	NA	131794977	131800625	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_131795149_131795256_131795514_131797670_131797743_131798417_131798600_131799804_131799927_131800203
transcript_39562.known	chr17	+	5404	8	FSM	ENSMUSG00000090083.12	ENSMUST00000024817.15	5404	8	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_5	10.0387006232919	549	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGCTGGCTCCCTGACT	NA	False	NA	NA	False	NA	NA	NA	29833763	29863965	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_29834053_29840482_29840612_29845479_29846224_29847933_29847997_29850644_29850735_29853634_29853743_29854791_29854997_29860189
transcript_39566.known	chr17	-	7117	5	FSM	ENSMUSG00000024018.19	ENSMUST00000129091.9	7117	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	115.181107391794	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTGTTTCTTGAGTTTC	NA	False	NA	NA	False	AATAAA	-26	NA	29935983	29912433	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_29919227_29923343_29923444_29924244_29924298_29924462_29924558_29935907
transcript_39568.known	chr17	-	3090	5	FSM	ENSMUSG00000024018.19	ENSMUST00000123502.8	3090	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	138.301075556194	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAAGAGGAAAAGAGGTGT	NA	False	NA	NA	False	NA	NA	NA	29935959	29916548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_29919227_29923228_29923444_29924244_29924295_29924462_29924558_29935907
transcript_3957.nnic	chr1	+	1231	6	NNC	ENSMUSG00000026433.14	novel	1226	6	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	36.3174888999777	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGGTTGTGATGCTGGG	NA	False	NA	15	True	ATTAAA	-17	NA	131794997	131800625	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_131795174_131795256_131795514_131797670_131797743_131798417_131798600_131799804_131799927_131800203
transcript_39571.known	chr17	-	1397	4	FSM	ENSMUSG00000024018.19	ENSMUST00000128751.3	1397	4	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_3	23.9072281027215	1170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTCTGTAAGACACACTGA	NA	False	NA	NA	False	AGTAAA	-20	NA	29936018	29922305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_29923444_29924244_29924298_29924462_29924558_29935907
transcript_39577.known	chr17	-	1477	9	FSM	ENSMUSG00000043557.17	ENSMUST00000165528.8	1477	9	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_8	2.5	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGCCAGCACCTTCTTTA	NA	False	NA	-2	True	ATTAAA	-18	NA	30061395	30051029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_30051374_30051886_30051996_30052195_30052327_30056965_30057101_30057410_30057564_30058522_30058547_30058778_30058957_30059770_30059871_30061092
transcript_39579.known	chr17	+	3039	6	FSM	ENSMUSG00000044477.13	ENSMUST00000226208.3	3039	6	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	13.1301180497359	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGATTGTCTGTGTTGGC	NA	False	NA	7	True	ATTAAA	-16	NA	30223706	30428996	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_30224283_30279783_30279825_30354296_30354480_30372276_30372343_30411536_30411705_30426991
transcript_3958.known	chr1	+	1202	5	FSM	ENSMUSG00000026433.14	ENSMUST00000112386.8	1202	5	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_1	6.13901457890434	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGCATCTGCGTTGTTC	NA	False	NA	NA	False	NA	NA	NA	131794961	131800477	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_131795514_131797670_131797743_131798417_131798600_131799804_131799927_131800203
transcript_39580.known	chr17	+	2640	5	FSM	ENSMUSG00000044477.13	ENSMUST00000057897.10	2640	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	41.3037528561268	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGGATTGTCTGTGTTG	NA	False	NA	5	True	ATTAAA	-14	NA	30224037	30428994	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_30224283_30279783_30279825_30354296_30354480_30411536_30411705_30426991
transcript_39581.known	chr17	-	7058	11	FSM	ENSMUSG00000062202.15	ENSMUST00000168787.8	7058	11	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_4	22.2551117723547	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGAGTTTGTGCCTTCTGT	NA	False	NA	NA	False	AATAAA	-16	NA	30795462	30434497	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_30439545_30447773_30447853_30493827_30493936_30518504_30518695_30553196_30553307_30732529_30732650_30736077_30736298_30743686_30743952_30746275_30746640_30749127_30749340_30795119
transcript_39584.known	chr17	-	414	1	FSM	ENSMUSG00000117962.2	ENSMUST00000235315.2	414	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1195	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTTATGCCATATTTTCA	9280	False	NA	NA	False	NA	NA	NA	30615007	30614593	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_30614600_30615000
transcript_39585.known	chr17	-	1528	7	FSM	ENSMUSG00000118341.2	ENSMUST00000235858.2	1528	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	50.7042075834606	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATATATAATAAATAAATCT	1474	False	NA	NA	False	NA	NA	NA	31142805	30678475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_30678577_30732529_30732650_30736077_30736298_30743686_30743952_30746275_30746640_30749127_30749340_31142559
transcript_39587.known	chr17	+	3099	11	FSM	ENSMUSG00000033826.11	ENSMUST00000237551.2	3099	11	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	9.52942810456116	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAATAAAATAAAAAT	199	False	NA	NA	False	NA	NA	NA	30845908	30878195	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_30846117_30854294_30854808_30854915_30855051_30862229_30862315_30863530_30863683_30867389_30867580_30868597_30868762_30872206_30872384_30875550_30875665_30875859_30875968_30876942
transcript_39589.nic	chr17	+	915	2	ISM	ENSMUSG00000033826.11	ENSMUST00000237551.2	3099	11	-3	23197	-3	388	intron_retention	FALSE	canonical	3	45	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGGGTTGGACTTAGTAA	196	False	NA	NA	False	CATAAA	-27	NA	30845905	30854998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_30846117_30854294
transcript_39614.known	chr17	+	454	1	FSM	ENSMUSG00000118382.2	ENSMUST00000235258.2	454	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTGTTGTGTGCACAAGC	NA	False	NA	NA	False	NA	NA	NA	30822194	30822648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_30822200_30822600
transcript_39615.known	chr17	-	845	4	FSM	ENSMUSG00000099474.2	ENSMUST00000188852.2	845	4	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_3	117.235754879739	2303	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCTTTCCTCTGAGATG	NA	False	NA	-1	True	AATAAA	-25	NA	30845879	30841414	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_30841669_30843173_30843588_30843854_30843908_30845755
transcript_39616.known	chr17	-	898	6	FSM	ENSMUSG00000024026.14	ENSMUST00000235171.2	898	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	1306.85751327373	3093	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAACAGCTCCCTTTAGAG	NA	False	NA	NA	False	NA	NA	NA	30831576	30812839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_30813201_30815347_30815438_30816778_30816867_30819012_30819154_30822993_30823077_30831441
transcript_39617.known	chr17	-	2024	7	FSM	ENSMUSG00000024026.14	ENSMUST00000024823.14	2024	7	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	1513.88137103128	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGGGCAGCAAGTCCCT	NA	False	NA	-12	True	AATAAA	-24	NA	30831586	30811834	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822360_30822492_30822993_30823077_30831441
transcript_39618.known	chr17	-	895	7	FSM	ENSMUSG00000024026.14	ENSMUST00000167624.2	895	7	0	0	0	0	multi-exon	FALSE	canonical	3	704	junction_1	947.318613537998	3450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGGTCTGGGCAGCAAG	NA	False	NA	-17	True	AATAAA	-19	NA	30831633	30811839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_30812049_30813088_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
transcript_39619.known	chr17	-	238	2	FSM	ENSMUSG00000024026.14	ENSMUST00000237063.2	238	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCTCACGCAGTGCGTAC	NA	False	NA	NA	False	NA	NA	NA	30821329	30819024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_30819154_30821220
transcript_3962.known	chr1	+	5998	7	FSM	ENSMUSG00000026434.13	ENSMUST00000062264.8	5998	7	0	0	0	0	multi-exon	FALSE	canonical	3	1163	junction_5	186.902306626275	437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTGTGCTTCGTGTGCTT	9304	False	NA	27	True	TATAAA	-18	NA	131838293	131864059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_131838489_131846742_131846793_131849680_131849787_131852323_131852380_131855801_131855955_131857350_131857501_131858771
transcript_39623.known	chr17	-	584	4	FSM	ENSMUSG00000024028.8	ENSMUST00000024826.8	584	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTATTTTGGTTTCCTTG	NA	False	NA	NA	False	AGTAAA	-23	NA	31363256	31360022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_31360197_31361175_31361323_31362087_31362238_31363143
transcript_39624.known	chr17	+	2539	13	FSM	ENSMUSG00000042345.16	ENSMUST00000151620.9	2539	13	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	6.05300659911163	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTACCTTATGATTCTATT	NA	False	NA	NA	False	NA	NA	NA	31431086	31461064	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_31431206_31432705_31432893_31434010_31434210_31436937_31437108_31438555_31438765_31447077_31447205_31450385_31450486_31451261_31451385_31454456_31454550_31456108_31456254_31456861_31456969_31458149_31458260_31460214
transcript_39628.known	chr17	-	1191	9	FSM	ENSMUSG00000024033.11	ENSMUST00000024832.9	1191	9	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_8	7.5	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCCTCTGATGTCGCTTC	NA	False	NA	-1	True	AATAAA	-26	NA	31496357	31473992	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_31474194_31477071_31477201_31477761_31477922_31480728_31480801_31484787_31484924_31485316_31485408_31492290_31492397_31492498_31492613_31496175
transcript_39632.known	chr17	-	1026	8	FSM	ENSMUSG00000024033.11	ENSMUST00000235144.2	1026	8	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_7	21.3101489666213	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAAATGAGCCTCTGATGT	NA	False	NA	-7	True	AATAAA	-20	NA	31496312	31473998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_31474194_31477071_31477201_31477761_31477922_31480728_31480801_31484787_31484924_31485316_31485408_31492290_31492397_31496175
transcript_39642.known	chr17	+	837	3	FSM	ENSMUSG00000117899.2	ENSMUST00000235624.2	837	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAAAACCTCTGAGTATT	NA	False	NA	NA	False	AATAAA	-5	NA	31466332	31472387	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_31466716_31466912_31467013_31472033
transcript_39646.known	chr17	+	440	2	FSM	ENSMUSG00000117899.2	ENSMUST00000237156.2	440	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTGAGTATTATTGCAAG	NA	False	NA	NA	False	AATAAA	-13	NA	31466637	31472395	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_31466716_31472033
transcript_39647.known	chr17	+	3389	20	FSM	ENSMUSG00000024036.17	ENSMUST00000165149.3	3389	20	0	0	0	0	multi-exon	TRUE	canonical	3	70	junction_8	17.4641698891444	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGATTTCCATCCAAGTC	NA	False	NA	NA	False	AATAAA	-45	NA	31515188	31569701	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_31515890_31519263_31519482_31526253_31526336_31534467_31534601_31535114_31535194_31538028_31538165_31540021_31540099_31541072_31541240_31544639_31544678_31547122_31547204_31552545_31552672_31554707_31554799_31556343_31556407_31556964_31557051_31557916_31557966_31559185_31559260_31559907_31559987_31565383_31565482_31568328_31568394_31568755
transcript_3965.nic	chr1	+	758	6	ISM	ENSMUSG00000026434.13	ENSMUST00000062264.8	5998	7	-122	6633	-100	-383	5prime_fragment	FALSE	canonical	3	1163	junction_5	193.114059560665	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAAAGATGGTTAAGAAGT	9182	False	NA	0	True	AAAAAG	-6	NA	131838171	131857426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_131838489_131846742_131846793_131849680_131849787_131852323_131852380_131855801_131855955_131857350
transcript_39650.known	chr17	+	1347	9	FSM	ENSMUSG00000024036.17	ENSMUST00000235220.2	1347	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	38.3764250549735	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTCTGTTGGTTACCGAGA	NA	False	NA	NA	False	NA	NA	NA	31554860	31569438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_31555011_31556343_31556407_31556964_31557051_31557916_31557966_31559185_31559260_31559907_31559987_31565383_31565482_31568328_31568394_31568755
transcript_39653.nic	chr17	+	1206	4	NIC	ENSMUSG00000024036.17	novel	3389	20	NA	NA	-125	-141	combination_of_known_junctions	FALSE	canonical	3	8	junction_3	65.1067499487487	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTCCTGGTGGATCCAG	NA	False	NA	NA	False	ATTAAA	-20	NA	31515052	31526790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_31515890_31519263_31519482_31526253_31526336_31526721
transcript_39655.nic	chr17	+	463	4	NIC	ENSMUSG00000024036.17	novel	3389	20	NA	NA	-42	-141	combination_of_known_junctions	FALSE	canonical	3	8	junction_3	69.4086129781856	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTCCTGGTGGATCCAG	NA	False	NA	NA	False	ATTAAA	-20	NA	31515135	31526790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_31515230_31519263_31519482_31526253_31526336_31526721
transcript_39659.known	chr17	+	215	2	FSM	ENSMUSG00000024036.17	ENSMUST00000236147.2	215	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCGAGGTTCGGGGACGAC	NA	False	NA	NA	False	NA	NA	NA	31515966	31519401	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_31516044_31519263
transcript_39661.known	chr17	+	1891	19	FSM	ENSMUSG00000041119.13	ENSMUST00000127929.8	1891	19	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_18	14.1770114735436	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTCTGTATTTTTTTTCT	NA	False	NA	NA	False	AATATA	-15	NA	31605227	31695133	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_31605331_31633074_31633146_31634253_31634332_31639218_31639263_31662139_31662195_31662811_31662883_31667340_31667426_31672375_31672455_31674027_31674103_31678048_31678136_31678874_31678980_31679152_31679236_31680544_31680702_31685328_31685443_31688767_31688873_31689654_31689784_31690732_31690829_31692131_31692254_31694901
transcript_39669.known	chr17	-	4154	11	FSM	ENSMUSG00000024037.14	ENSMUST00000171171.9	4154	11	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_7	39.3020355706928	501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACGTTGTCTCTGTGTCTT	NA	False	NA	0	True	ATTAAA	-23	NA	31731725	31713295	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_31715903_31717471_31717542_31717962_31718147_31718782_31718848_31719587_31719687_31720188_31720250_31721744_31721858_31722483_31722641_31728742_31728887_31729551_31729621_31731140
transcript_39671.known	chr17	-	3633	11	FSM	ENSMUSG00000024037.14	ENSMUST00000172284.9	3633	11	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_8	141.425033144772	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACGTTGTCTCTGTGTCT	NA	False	NA	-1	True	ATTAAA	-22	NA	31731257	31713296	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_31715903_31717471_31717542_31717962_31718147_31718782_31718848_31719587_31719687_31720188_31720250_31721744_31721858_31722483_31722641_31728794_31728887_31729551_31729621_31731140
transcript_39677.known	chr17	-	1897	11	FSM	ENSMUSG00000024037.14	ENSMUST00000236665.2	1897	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	145.464634877347	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCTGGAATGTTCAGCAG	NA	False	NA	-17	True	AATAAA	-17	NA	31731283	31715095	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_31715903_31717471_31717542_31717962_31718147_31718782_31718848_31719587_31719687_31720188_31720250_31721744_31721858_31722483_31722626_31728742_31728887_31729551_31729621_31731140
transcript_39679.known	chr17	+	493	3	FSM	ENSMUSG00000024038.18	ENSMUST00000064798.16	493	3	0	0	0	0	multi-exon	FALSE	canonical	3	3604	junction_2	48.5	20119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGTGGTTATTTCCCCTC	NA	False	NA	31	True	AATAAA	-21	NA	31739088	31750305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_31739236_31740542_31740667_31750083
transcript_39680.known	chr17	+	1582	4	FSM	ENSMUSG00000024038.18	ENSMUST00000046288.16	1582	4	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_3	1707.19269237216	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGTGGTTATTTCCCCTC	NA	False	NA	31	True	AATAAA	-21	NA	31739091	31750305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_31739236_31740542_31740667_31746283_31747376_31750083
transcript_39681.known	chr17	+	645	3	FSM	ENSMUSG00000024038.18	ENSMUST00000191598.3	645	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	1845	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATGTCTGTGGCTTTGAG	NA	False	NA	NA	False	NA	NA	NA	31739158	31746219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_31739236_31740542_31740667_31745775
transcript_39683.known	chr17	+	2170	12	FSM	ENSMUSG00000006705.14	ENSMUST00000175806.9	2170	12	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	48.0870422916989	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTATGACTATATTGAGGA	NA	False	NA	NA	False	TATAAA	-15	NA	31783835	31824466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_31783863_31800777_31801025_31802669_31802778_31807433_31807562_31809576_31809749_31811078_31811250_31814198_31814299_31815769_31815868_31818488_31818618_31821759_31821837_31822160_31822334_31823726
transcript_39684.known	chr17	+	2014	11	FSM	ENSMUSG00000006705.14	ENSMUST00000237248.2	2014	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_5	40.2970222224918	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCACATGCTTGTCTTTCG	NA	False	NA	NA	False	GATAAA	-16	NA	31783780	31824505	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_31783863_31802669_31802778_31807433_31807562_31809576_31809749_31811078_31811250_31814201_31814299_31815769_31815868_31818488_31818618_31821759_31821837_31822160_31822334_31823726
transcript_39689.nnic	chr17	+	374	3	NNC	ENSMUSG00000006705.14	novel	1855	3	NA	NA	-11	-3062	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	64.5	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTATGGCTTTATCTCCCC	NA	False	NA	NA	False	AATAAA	-18	NA	31783696	31804377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_31783863_31802669_31802778_31804277
transcript_39690.known	chr17	+	1855	3	FSM	ENSMUSG00000006705.14	ENSMUST00000176895.2	1855	3	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	18	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGATTAGGAG	NA	False	NA	NA	False	NA	NA	NA	31783732	31809050	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_31783863_31802669_31802778_31807433
transcript_39694.known	chr17	-	2533	17	FSM	ENSMUSG00000024039.16	ENSMUST00000067801.14	2533	17	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_16	84.4695766237762	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCCTTGGTGTGAGTGTC	1872	False	NA	1	True	NA	NA	NA	31856212	31831596	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_31832268_31833502_31833545_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852126_31856056
transcript_39695.known	chr17	-	2403	16	FSM	ENSMUSG00000024039.16	ENSMUST00000078509.12	2403	16	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_1	29.2615789047686	607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCGTGTCGACCTTATT	1945	False	NA	-17	True	NA	NA	NA	31856139	31831614	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_31832268_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852129_31856056
transcript_39696.known	chr17	-	882	1	FSM	ENSMUSG00000118161.2	ENSMUST00000236305.2	882	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2864	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTTTTTATATGAGAAAAA	7279	False	NA	NA	False	NA	NA	NA	31863753	31862871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_31862900_31863800
transcript_39705.known	chr17	-	532	6	FSM	ENSMUSG00000061613.14	ENSMUST00000236475.2	532	6	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_5	2542.17667364013	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGAGGTGGAGGTGGCGG	NA	False	NA	NA	False	NA	NA	NA	31877715	31866262	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31877626
transcript_39708.known	chr17	-	1046	8	FSM	ENSMUSG00000061613.14	ENSMUST00000014684.6	1046	8	0	0	0	0	multi-exon	FALSE	canonical	3	4626	junction_6	706.208473585007	25965	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGACTTCTTGTAAC	NA	False	NA	-17	True	AATAAA	-19	NA	31877866	31866054	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31870687_31873952_31874041_31877626
transcript_39709.known	chr17	-	923	8	FSM	ENSMUSG00000061613.14	ENSMUST00000166526.9	923	8	0	0	0	0	multi-exon	FALSE	canonical	3	1007	junction_5	2353.82216310201	10791	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGACTTCTTGTAAC	NA	False	NA	-17	True	AATAAA	-19	NA	31877743	31866054	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31871475_31871543_31873952_31874041_31877626
transcript_39710.known	chr17	-	975	9	FSM	ENSMUSG00000061613.14	ENSMUST00000237323.2	975	9	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_6	2395.95355495469	8093	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGTGTGACTTCTTGTAA	NA	False	NA	-18	True	AATAAA	-18	NA	31877729	31866055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31870687_31871475_31871543_31873952_31874041_31877626
transcript_39711.known	chr17	-	4521	14	FSM	ENSMUSG00000024042.8	ENSMUST00000024839.6	4521	14	0	0	0	0	multi-exon	FALSE	canonical	2	135	junction_9	20.6380472449028	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCTGTGAGAGCCCATTC	NA	False	NA	-4	True	AATAAA	-34	NA	32074778	32063223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_32065618_32066006_32066236_32066868_32067151_32067605_32067823_32067932_32068056_32068492_32068649_32068901_32069126_32069699_32069824_32069914_32070040_32070208_32070371_32070506_32070571_32073181_32073299_32073867_32074039_32074645
transcript_39713.nic	chr17	-	475	4	ISM	ENSMUSG00000024042.8	ENSMUST00000234331.2	2554	12	-3	4503	-3	0	5prime_fragment	FALSE	canonical	3	181	junction_3	7.78888096369861	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGAGTTGAATTCGTCAT	NA	False	NA	NA	False	NA	NA	NA	32074770	32070508	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_-_32070571_32073181_32073299_32073867_32074039_32074645
transcript_39714.known	chr17	+	4874	16	FSM	ENSMUSG00000058392.14	ENSMUST00000081339.13	4874	16	0	0	0	0	multi-exon	TRUE	canonical	3	488	junction_12	76.5992747282172	504	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTCTTTGATGTTGCCTC	NA	False	NA	22	True	ATTAAA	-24	NA	32255073	32281839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_32255579_32264902_32264986_32266647_32266706_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272929_32274078_32274099_32274884_32274972_32275529_32276231_32277497_32277639_32278247_32278312_32279321
transcript_3972.known	chr1	+	3212	5	FSM	ENSMUSG00000026435.16	ENSMUST00000177943.8	3212	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	4.65698400254929	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTGTTTGTCTTTTCTGT	NA	False	NA	NA	False	ATTAAA	-23	NA	131890704	131910707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_131890791_131904455_131904851_131905150_131905937_131906485_131906752_131909028
transcript_39726.known	chr17	-	3115	9	FSM	ENSMUSG00000002076.13	ENSMUST00000238192.2	3115	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_8	409.307036343134	1613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACCTTGCAGGGATTGAA	NA	False	NA	NA	False	AATAAA	-17	NA	32255323	32163742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_32165786_32206321_32206426_32226649_32226768_32230149_32230283_32232291_32232442_32241739_32241844_32252234_32252386_32253418_32253677_32255269
transcript_3973.known	chr1	+	305	2	FSM	ENSMUSG00000026436.16	ENSMUST00000146188.2	305	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAATTCCTGCCCTGACCC	535	False	NA	NA	False	GATAAA	-34	NA	131935836	131942336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_131935926_131942120
transcript_39742.known	chr17	-	1479	7	FSM	ENSMUSG00000002076.13	ENSMUST00000133308.3	1479	7	0	0	0	0	multi-exon	FALSE	canonical	3	341	junction_1	334.770941590415	1601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGGTTTAGGAAGTGGT	NA	False	NA	-13	True	AATAAA	-30	NA	32253511	32165055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_32165786_32226649_32226768_32230149_32230283_32232291_32232442_32241739_32241844_32252234_32252386_32253418
transcript_39746.known	chr17	-	1591	7	FSM	ENSMUSG00000037577.14	ENSMUST00000162117.3	1591	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_5	2.21108319357027	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCCGGTCTGATGTTTAA	994	False	NA	NA	False	CATAAA	-26	NA	32408523	32403633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_32404096_32404189_32404327_32404419_32404524_32407149_32407279_32407384_32407543_32407759_32407846_32408008
transcript_39753.known	chr17	-	2416	7	FSM	ENSMUSG00000037577.14	ENSMUST00000087721.10	2416	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	5.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAACTGTGTATTCACTGC	1080	False	NA	NA	False	AGTAAA	-35	NA	32408437	32402743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_32404096_32404189_32404327_32404419_32404524_32407149_32407279_32407384_32407543_32407759_32407846_32407987
transcript_39755.known	chr17	+	345	1	FSM	ENSMUSG00000116414.3	ENSMUST00000230961.3	345	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGCAACTTTTAAATATT	8385	False	NA	NA	False	CATAAA	-10	NA	32461136	32461481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_32461100_32461500
transcript_39756.known	chr17	-	1823	9	FSM	ENSMUSG00000024002.19	ENSMUST00000237692.2	1823	9	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_8	78.3700157904795	211	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GACAAAGAAAAATAACAGCA	NA	False	NA	87	True	NA	NA	NA	32503107	32432536	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32444549_32444688_32448390_32448710_32503036
transcript_39758.known	chr17	-	3731	14	FSM	ENSMUSG00000024045.7	ENSMUST00000002699.7	3731	14	0	0	0	0	multi-exon	TRUE	canonical	3	426	junction_6	74.0811964579343	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTGTGTTCATTAATTAC	NA	False	NA	-1	True	AATAAA	-16	NA	32540159	32522645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32533084_32533119_32534415_32534463_32534628_32534759_32535160_32535642_32536040_32536321_32536819_32536853_32537744_32537784_32540058
transcript_3976.nnic	chr1	-	1436	5	NNC	ENSMUSG00000101549.2	novel	359	4	NA	NA	1906	7002	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_2	39.6169155790806	319	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGAGTGCTGATTTTTCCC	NA	False	NA	NA	False	AATAAA	-44	NA	132206243	132195451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_132196405_132196619_132196718_132202453_132202560_132202761_132202875_132206077
transcript_39765.known	chr17	-	4071	13	FSM	ENSMUSG00000024045.7	ENSMUST00000237103.2	4071	13	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_6	76.8282265114124	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTTGTGTTCATTAATT	NA	False	NA	-3	True	AATAAA	-14	NA	32540099	32522647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32533084_32533119_32534415_32534463_32534628_32535642_32536040_32536321_32536819_32536853_32537744_32537784_32540058
transcript_39766.known	chr17	-	2021	12	FSM	ENSMUSG00000024045.7	ENSMUST00000236954.2	2021	12	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_10	162.409186321627	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAGTCCTAAAACGGACAG	NA	False	NA	-29	True	AATAAA	-22	NA	32540087	32523970	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32533084_32533119_32534415_32534463_32534628_32534759_32535160_32535642_32537744_32537784_32540058
transcript_39781.known	chr17	-	1987	15	FSM	ENSMUSG00000002625.11	ENSMUST00000236503.2	1987	15	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_11	68.7455007804221	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTCTTCGTTTGTGCTGTG	NA	False	NA	-1	True	AATAAA	-16	NA	32569569	32540398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_32540760_32540869_32540966_32551452_32551584_32551784_32551891_32551976_32552119_32553561_32553671_32554536_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557244_32557329_32557430_32557489_32557764_32557798_32564297_32564373_32569460
transcript_39785.known	chr17	-	2102	14	FSM	ENSMUSG00000002625.11	ENSMUST00000050214.9	2102	14	0	0	0	0	multi-exon	TRUE	canonical	3	272	junction_6	38.0609912279546	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTTCGTTTGTGCTGTGG	NA	False	NA	0	True	AATAAA	-17	NA	32569581	32540397	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_32540760_32540869_32540966_32551452_32551584_32551784_32551891_32551976_32552119_32553561_32553671_32554536_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557244_32557489_32557764_32557798_32564297_32564373_32569460
transcript_39786.nic	chr17	-	1930	14	NIC	ENSMUSG00000002625.11	novel	2102	14	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_10	101.600738477491	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTTCGTTTGTGCTGTGG	NA	False	NA	0	True	AATAAA	-17	NA	32569595	32540397	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_32540760_32540869_32540966_32551452_32551584_32551784_32551891_32551976_32552119_32553561_32553671_32554536_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557430_32557489_32557764_32557798_32564297_32564373_32569460
transcript_39794.nic	chr17	-	941	5	ISM	ENSMUSG00000002625.11	ENSMUST00000050214.9	2102	14	-14	14861	-14	188	5prime_fragment	FALSE	canonical	3	358	junction_1	16.6508258053467	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAATAAGCTGACCTACCC	NA	False	NA	NA	False	NA	NA	NA	32569595	32555258	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_-_32555713_32557244_32557489_32557764_32557798_32564297_32564373_32569460
transcript_39795.known	chr17	-	800	4	FSM	ENSMUSG00000002625.11	ENSMUST00000235387.2	800	4	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_2	2.94392028877595	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCTGGGACTAACCACTG	NA	False	NA	NA	False	NA	NA	NA	32569563	32556899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_32557489_32557764_32557798_32564297_32564373_32569460
transcript_39799.known	chr17	+	2618	14	FSM	ENSMUSG00000061126.6	ENSMUST00000237491.2	2618	14	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	21.761482720107	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGTCTACTGGCATGGGG	NA	False	NA	NA	False	AATAGA	-14	NA	32671696	32712294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_32671771_32684452_32684556_32687434_32687658_32689777_32689923_32700047_32700102_32700753_32700882_32701060_32701186_32702178_32702447_32705743_32705811_32705919_32706050_32708593_32708728_32710116_32710182_32710780_32710864_32711275
transcript_398.known	SIRV5	+	2029	16	FSM	SIRV5A	SIRV505	2029	16	0	0	0	0	multi-exon	FALSE	canonical	3	5578	junction_10	1970.92572045614	3021	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	1000	10991	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
transcript_39802.nic	chr17	+	1847	8	ISM	ENSMUSG00000061126.6	ENSMUST00000003413.7	1599	12	13501	-673	3712	-122	3prime_fragment	FALSE	canonical	3	49	junction_7	8.14912039825809	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCGTCCATCTCATCCGGT	NA	False	NA	NA	False	AGTAAA	-17	NA	32700936	32712126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_32701186_32702178_32702447_32705743_32705811_32705919_32706050_32708593_32708728_32710116_32710182_32710780_32710864_32711275
transcript_39803.nic	chr17	+	1964	8	ISM	ENSMUSG00000061126.6	ENSMUST00000003413.7	1599	12	13501	-790	3712	-5	3prime_fragment	FALSE	canonical	3	49	junction_7	8.14912039825809	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGGACAATTTGTGCTCC	NA	False	NA	NA	False	ACTAAA	-13	NA	32700936	32712243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_32701186_32702178_32702447_32705743_32705811_32705919_32706050_32708593_32708728_32710116_32710182_32710780_32710864_32711275
transcript_39805.known	chr17	+	1117	1	FSM	ENSMUSG00000061126.6	ENSMUST00000235903.2	1117	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAATTTGTGCTCCGTTTA	NA	False	NA	NA	False	ACTAAA	-18	NA	32711131	32712248	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_32711100_32712200
transcript_39806.known	chr17	+	1693	13	FSM	ENSMUSG00000091586.3	ENSMUST00000165999.2	1693	13	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_12	8.54725426997206	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGATCTACTACTGTCCCA	NA	False	NA	NA	False	NA	NA	NA	32725435	32747868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_32725553_32725867_32726067_32736867_32737013_32739336_32739391_32739476_32739605_32741091_32741214_32742975_32743247_32743552_32743620_32743808_32743939_32746814_32746949_32747020_32747086_32747249_32747333_32747690
transcript_39809.known	chr17	+	2242	13	FSM	ENSMUSG00000048440.17	ENSMUST00000169591.8	2242	13	0	0	0	0	multi-exon	TRUE	canonical	3	41	junction_1	14.6806278249036	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCATGTCTTGGTTCCATT	NA	False	NA	21	True	NA	NA	NA	32755531	32770772	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_32755630_32755968_32756171_32759244_32759390_32761711_32761766_32761850_32761979_32763081_32763204_32763856_32764128_32765342_32765410_32765603_32765734_32769226_32769361_32769476_32769542_32769705_32769789_32770029
transcript_39810.known	chr17	+	2227	13	FSM	ENSMUSG00000048440.17	ENSMUST00000003416.15	2227	13	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_12	10.7625895273086	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCATGTCTTGGTTCCAT	NA	False	NA	20	True	NA	NA	NA	32755542	32770771	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_32755630_32755971_32756171_32759244_32759390_32761711_32761766_32761850_32761979_32763081_32763204_32763856_32764128_32765342_32765410_32765603_32765734_32769226_32769361_32769476_32769542_32769705_32769789_32770029
transcript_39812.known	chr17	+	2078	12	FSM	ENSMUSG00000048440.17	ENSMUST00000165515.8	2078	12	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	22.7559818672762	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCATGTCTTGGTTCCATT	NA	False	NA	21	True	NA	NA	NA	32755550	32770772	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_32755630_32755968_32756171_32761711_32761766_32761850_32761979_32763081_32763204_32763856_32764128_32765342_32765410_32765603_32765734_32769226_32769361_32769476_32769542_32769705_32769789_32770029
transcript_3982.nnic	chr1	-	1533	4	NNC	ENSMUSG00000101549.2	novel	359	4	NA	NA	1906	7197	at_least_one_novel_splicesite	FALSE	canonical	3	85	junction_1	10.077477638554	791	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGTTGTTTCTTCTTT	NA	False	NA	NA	False	NA	NA	NA	132206243	132195256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_132196405_132202453_132202560_132202761_132202875_132206077
transcript_39821.known	chr17	+	804	7	FSM	ENSMUSG00000048440.17	ENSMUST00000170956.8	804	7	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_6	30.4562527789177	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCACAGTCAGGAGCCACC	NA	False	NA	NA	False	NA	NA	NA	32755568	32763399	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_32755630_32755971_32756171_32759244_32759390_32761711_32761766_32761850_32761979_32763081_32763204_32763304
transcript_39824.nic	chr17	+	668	6	NIC	ENSMUSG00000048440.17	novel	2227	13	NA	NA	-1	523	combination_of_known_junctions	FALSE	canonical	3	16	junction_2	29.990665214363	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTCTTGTTCGTTGACT	NA	False	NA	NA	False	AATAAA	-13	NA	32755530	32763922	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_32755630_32755971_32756171_32761711_32761766_32761850_32761979_32763081_32763204_32763856
transcript_39827.nic	chr17	+	1972	11	ISM	ENSMUSG00000090700.3	ENSMUST00000165061.2	1858	12	2552	-232	2552	5	3prime_fragment	FALSE	canonical	1	2	junction_3	2.53968501984006	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGGCTTTCCTTTAAGGG	1806	False	NA	NA	False	AATAAA	-23	NA	32880935	32895893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_32881237_32886789_32886844_32886927_32887056_32888747_32888870_32889978_32890250_32892904_32892972_32893155_32893286_32894468_32894603_32894685_32894751_32894877_32894961_32895276
transcript_39829.known	chr17	-	10851	4	FSM	ENSMUSG00000024298.16	ENSMUST00000159086.10	10851	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	1.24721912892465	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTCTTTGGTGCTGTCAT	NA	False	NA	-5	True	NA	NA	NA	33007261	32984469	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_32994983_32996130_32996192_32996374_32996502_33007111
transcript_39833.known	chr17	-	3536	4	FSM	ENSMUSG00000055202.12	ENSMUST00000200914.5	3536	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_3	3.09120616516523	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCACTGCTTTCATGT	4484	False	NA	2	True	ATTAAA	-25	NA	33028905	33014649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_33017848_33019360_33019422_33019785_33019913_33028755
transcript_39835.known	chr17	-	374	4	FSM	ENSMUSG00000095253.5	ENSMUST00000202759.2	374	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	14.4452991200136	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAATATACCGAAGGTCA	NA	False	NA	NA	False	AATGAA	-44	NA	33049220	33040051	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_33040074_33040751_33040813_33041041_33041175_33049062
transcript_39842.known	chr17	-	1195	2	FSM	ENSMUSG00000117654.2	ENSMUST00000234587.2	1195	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAGTCTGAGCTGAGAAAA	NA	False	NA	NA	False	NA	NA	NA	33096916	33082635	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_33083596_33096681
transcript_39844.nnic	chr17	-	844	2	Genic_Genomic	ENSMUSG00000117468.2	novel	816	1	NA	NA	-18	75	multi-exon	TRUE	canonical	0	0	junction_1	0	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAGAGAACACAAACATGC	NA	False	NA	NA	False	AATAAA	-34	NA	33072012	33071103	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr17_-_33071900_33071964
transcript_39845.nnic	chr17	-	1217	2	NNC	ENSMUSG00000117654.2	novel	1195	2	NA	NA	18	-12465	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	0	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCATTGGTGTTTTACCT	NA	False	NA	NA	False	TTTAAA	-19	NA	33096898	33095100	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_33096101_33096681
transcript_39848.known	chr17	-	5337	4	FSM	ENSMUSG00000095325.4	ENSMUST00000228075.3	5337	4	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_3	10.4986771653491	247	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTTTCCAGTTTTGTTT	NA	False	NA	NA	False	ATTAAA	-22	NA	33110616	33098192	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_33103140_33104676_33104738_33104930_33105058_33110414
transcript_39854.known	chr17	-	1752	13	FSM	ENSMUSG00000024055.16	ENSMUST00000075253.13	1752	13	0	0	0	0	multi-exon	FALSE	canonical	2	129	junction_12	13.5285192587117	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGAGCATCAGACCAAAAT	NA	False	NA	-7	True	AATAAA	-29	NA	33166376	33143661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_33143929_33144297_33144381_33144510_33144576_33144663_33144798_33148111_33148242_33148443_33148511_33148828_33149097_33149514_33149637_33151386_33151515_33151602_33151657_33160029_33160175_33165778_33165978_33166286
transcript_3986.known	chr1	+	4269	5	FSM	ENSMUSG00000042115.5	ENSMUST00000046071.5	4269	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.707106781186548	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGAAGAGTCTAGACTTC	33	False	NA	NA	False	NA	NA	NA	132226363	132235095	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_132227391_132230262_132230428_132230677_132230894_132231466_132231569_132232336
transcript_39862.known	chr17	-	1389	10	FSM	ENSMUSG00000024055.16	ENSMUST00000139353.8	1389	10	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_8	48.4694125260177	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTGAGTGACTATGAGC	NA	False	NA	-20	True	AATAAA	-16	NA	33166353	33143674	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_33143929_33144297_33144381_33144510_33144576_33144663_33144798_33148111_33148242_33148443_33148511_33148828_33149097_33149514_33149637_33165778_33165978_33166286
transcript_39865.known	chr17	-	1483	11	FSM	ENSMUSG00000024055.16	ENSMUST00000137222.8	1483	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	63.7313894403692	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAACTGCCTCCTGTTCTT	NA	False	NA	-35	True	AATAAA	-1	NA	33166340	33143689	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_33143929_33144297_33144381_33144510_33144576_33144663_33144798_33148111_33148242_33148443_33148511_33148828_33149097_33149514_33149637_33160029_33160175_33165778_33165978_33166309
transcript_39867.known	chr17	-	762	4	FSM	ENSMUSG00000024295.10	ENSMUST00000234619.2	762	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4.02768199119819	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCTGATATTCATTGTTA	NA	False	NA	NA	False	ATTAAA	-13	NA	33184669	33174970	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_33175278_33176622_33176849_33179548_33179752_33184643
transcript_3987.known	chr1	+	2936	8	FSM	ENSMUSG00000009772.16	ENSMUST00000072177.14	2936	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	17.0784504387182	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCTCTTGTTCACTTTGG	NA	False	NA	NA	False	ATTAAA	-24	NA	132243863	132261031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_132244211_132252690_132252812_132253943_132253968_132255434_132255587_132255868_132255935_132257695_132257816_132258296_132258430_132259058
transcript_39870.known	chr17	-	897	4	FSM	ENSMUSG00000024295.10	ENSMUST00000234274.2	897	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	2.86744175568088	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCTGATATTCATTGTTA	NA	False	NA	NA	False	ATTAAA	-13	NA	33184686	33174970	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_33175278_33176508_33176849_33179548_33179752_33184639
transcript_39871.known	chr17	+	2376	4	FSM	ENSMUSG00000053600.9	ENSMUST00000039132.9	2376	4	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	5.18544972870135	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAAGTTGGCTGGCATAG	NA	False	NA	NA	False	AATAAA	-37	NA	33184787	33198207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_33184904_33194887_33195015_33195200_33195259_33196132
transcript_39875.known	chr17	+	2950	4	FSM	ENSMUSG00000053390.17	ENSMUST00000087666.11	2950	4	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	3.55902608401044	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATGGTGATCGGTCTTAT	NA	False	NA	NA	False	ATTAAA	-16	NA	33212170	33224431	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_33212233_33220597_33220725_33220931_33220993_33221731
transcript_39877.known	chr17	-	3407	4	FSM	ENSMUSG00000067430.8	ENSMUST00000087654.5	3407	4	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	5.73488351136175	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTGTTCAAATGAGATTT	2759	False	NA	-16	True	NA	NA	NA	33252376	33235836	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_33238944_33240431_33240484_33240679_33240807_33252255
transcript_39878.known	chr17	+	6440	4	FSM	ENSMUSG00000067424.14	ENSMUST00000131722.9	6440	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	9.7410927974683	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTAGTGTGAGTCACTGAT	NA	False	NA	NA	False	AATAAA	-18	NA	33308283	33329679	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_33308454_33321204_33321332_33321516_33321578_33323597
transcript_39879.known	chr17	+	758	4	FSM	ENSMUSG00000067424.14	ENSMUST00000140829.2	758	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	2.05480466765633	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTCCCTTCGACGTCATG	NA	False	NA	NA	False	NA	NA	NA	33311431	33324032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_33311567_33321204_33321332_33321516_33321578_33323597
transcript_3988.known	chr1	+	3107	7	FSM	ENSMUSG00000009772.16	ENSMUST00000082125.6	3107	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	6.54896090146283	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACAAACAAACAAGCACCC	NA	False	NA	NA	False	NA	NA	NA	132243863	132261226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_132244211_132252690_132252812_132255434_132255587_132255868_132255935_132257695_132257816_132258296_132258430_132259058
transcript_39881.known	chr17	+	414	4	FSM	ENSMUSG00000067424.14	ENSMUST00000153072.8	414	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	10.6770782520313	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGAGTAAAACGGTGTGAA	NA	False	NA	NA	False	AAGAAA	-8	NA	33308537	33323698	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_33308663_33321204_33321332_33321516_33321578_33323597
transcript_39882.known	chr17	-	3544	4	FSM	ENSMUSG00000094441.3	ENSMUST00000008830.10	3544	4	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_3	10.077477638554	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTGTTGTGTTGTGGT	NA	False	NA	NA	False	ATTAAA	-16	NA	33474119	33458691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_33461925_33462686_33462745_33462981_33463109_33473993
transcript_39885.known	chr17	+	5788	4	FSM	ENSMUSG00000096910.3	ENSMUST00000099414.5	5788	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_3	21.7613316585993	176	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTTGTGTTGTGGTTT	NA	False	NA	16	True	ATTAAA	-18	NA	33508517	33526215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_33508644_33519554_33519682_33519918_33519977_33520738
transcript_3989.known	chr1	-	1540	2	FSM	ENSMUSG00000097760.3	ENSMUST00000180835.2	1540	2	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAATAAAACTCTTAAGA	NA	False	NA	NA	False	AATAAA	-12	NA	132404783	132394170	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_132395387_132404459
transcript_39891.known	chr17	-	812	5	FSM	ENSMUSG00000003929.12	ENSMUST00000235063.2	812	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	15.2540978100968	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTCACTTCTGATCAAGAT	NA	False	NA	NA	False	AATAAA	-23	NA	33577842	33554283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_33554628_33555428_33555484_33555695_33555823_33557074_33557226_33577707
transcript_39892.known	chr17	-	6639	4	FSM	ENSMUSG00000003929.12	ENSMUST00000054072.9	6639	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	5.43650214343336	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTTGGTTGCTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	33577852	33548315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_33554628_33555428_33555484_33555695_33555823_33577707
transcript_39894.nnic	chr17	-	1214	4	NIC	ENSMUSG00000055240.18	novel	1428	6	NA	NA	-27	108	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	19.6694913225759	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTATTTATTGTGTATAC	NA	False	NA	NA	False	AATAAA	-24	NA	33613642	33579372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_33580233_33605395_33605442_33605658_33605786_33613461
transcript_39895.known	chr17	-	353	4	FSM	ENSMUSG00000055240.18	ENSMUST00000183047.2	353	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	21.0765799460496	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGATTATGGAAGAACACTG	NA	False	NA	NA	False	NA	NA	NA	33613579	33604680	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_33604743_33605395_33605442_33605658_33605786_33613461
transcript_39896.known	chr17	-	2659	4	FSM	ENSMUSG00000055240.18	ENSMUST00000167107.10	2659	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	5.79271573232759	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGACTGATTTTTGCTTTT	NA	False	NA	NA	False	AATAAA	-35	NA	33613615	33599228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_33601561_33605395_33605442_33605658_33605786_33613461
transcript_39899.known	chr17	-	6095	3	FSM	ENSMUSG00000055240.18	ENSMUST00000174512.4	6095	3	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	2.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAAATGAAAACATG	NA	False	NA	NA	False	AATAAA	-23	NA	33613597	33599609	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_33605442_33605658_33605786_33613461
transcript_39900.known	chr17	+	884	5	FSM	ENSMUSG00000024299.18	ENSMUST00000234497.2	884	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	14.7648230602334	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCACGAGTGATGGGCAGAA	NA	False	NA	NA	False	AATAAA	-39	NA	33743217	33750929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_33743233_33747257_33747445_33747653_33747803_33749106_33749264_33750553
transcript_39901.known	chr17	+	1798	5	FSM	ENSMUSG00000024299.18	ENSMUST00000174170.3	1798	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	5.3851648071345	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAATTAAAAAAGAAAATAAT	NA	False	NA	NA	False	NA	NA	NA	33743195	33751623	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_33743233_33747257_33747445_33747653_33748001_33749106_33749264_33750553
transcript_39902.known	chr17	+	2533	3	FSM	ENSMUSG00000024299.18	ENSMUST00000234715.2	2533	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	2	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAAGTCCGGCT	NA	False	NA	NA	False	NA	NA	NA	33743183	33749950	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_33743233_33747257_33747445_33747653
transcript_39906.nic	chr17	+	1727	8	NIC	ENSMUSG00000024300.18	novel	3831	28	NA	NA	-199	0	intron_retention	FALSE	canonical	3	6	junction_1	19.0552365720378	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAGAAGTAAATTACTGAG	6393	False	NA	NA	False	AATAAA	-17	NA	33816915	33826736	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_33817287_33820024_33820171_33820632_33820780_33820915_33821065_33821499_33821584_33823230_33823427_33823523_33823694_33826272
transcript_3991.known	chr1	+	1923	1	FSM	ENSMUSG00000026439.15	ENSMUST00000187834.2	1923	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACCACAAGTATACATGC	NA	False	NA	5	True	AATAAA	-14	NA	132431470	132433393	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_132431500_132433400
transcript_39914.known	chr17	+	1211	7	FSM	ENSMUSG00000073423.11	ENSMUST00000166627.8	1211	7	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_2	162.952702749397	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTACCTATGCCTTC	4917	False	NA	29	True	AATACA	-19	NA	33848063	33850690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_33848191_33848595_33848673_33848770_33849054_33849340_33849449_33849549_33849656_33850102_33850438_33850515
transcript_39918.known	chr17	+	1197	6	FSM	ENSMUSG00000073423.11	ENSMUST00000073570.12	1197	6	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_1	31.6569107779012	1460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGAGTGCTCTTCTCCG	4917	False	NA	92	True	NA	NA	NA	33848063	33850753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_33848191_33848770_33849054_33849340_33849449_33849549_33849656_33850102_33850438_33850515
transcript_3992.known	chr1	+	2856	14	FSM	ENSMUSG00000026439.15	ENSMUST00000190997.7	2856	14	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_13	83.2346081867393	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGTACAATAAGTGTTT	NA	False	NA	NA	False	AATAAA	-17	NA	132405104	132432627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425860_132431501
transcript_39928.known	chr17	+	944	5	FSM	ENSMUSG00000073423.11	ENSMUST00000170225.3	944	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	178.871986347779	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTATAGGAGCAGGTTG	4948	False	NA	NA	False	NA	NA	NA	33848094	33850437	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_33848191_33848754_33849054_33849340_33849449_33849549_33849656_33850102
transcript_39930.known	chr17	+	1544	5	FSM	ENSMUSG00000073423.11	ENSMUST00000172455.3	1544	5	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_1	35.2233942146409	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATACATGATTTTTACCT	4928	False	NA	3	True	NA	NA	NA	33848074	33850664	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_33848191_33848770_33849054_33849340_33849449_33849549_33850438_33850515
transcript_39938.known	chr17	-	1418	5	FSM	ENSMUSG00000079557.12	ENSMUST00000173015.8	1418	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	109.184476918654	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATGTTTCTAAGCTGTTC	2706	False	NA	-11	True	AATAAA	-33	NA	33937614	33910488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_33911178_33915010_33915221_33921986_33922183_33928718_33928947_33937519
transcript_39940.known	chr17	-	1398	5	FSM	ENSMUSG00000079557.12	ENSMUST00000172767.9	1398	5	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_1	25.5196003103497	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATGTTTCTAAGCTGTTC	2676	False	NA	-11	True	AATAAA	-33	NA	33937644	33910488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_33911128_33915010_33915221_33921986_33922183_33928718_33928947_33937519
transcript_39943.known	chr17	-	2370	17	FSM	ENSMUSG00000059208.16	ENSMUST00000087582.13	2370	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	626.847466369411	5607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGGCTTGCCTTTTTTG	5740	False	NA	-8	True	AATAAA	-13	NA	33904393	33865212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885504_33885620_33885660_33887958_33888053_33888142_33888151_33889054_33889108_33896247_33896415_33904240
transcript_39944.known	chr17	-	2428	17	FSM	ENSMUSG00000059208.16	ENSMUST00000139302.8	2428	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	711.141860737891	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTTGCCTTTTTTGTTT	5771	False	NA	-5	True	AATAAA	-16	NA	33904362	33865209	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_33865720_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885504_33885620_33885660_33887958_33888053_33888142_33888151_33889054_33889108_33896247_33896415_33904240
transcript_39945.known	chr17	-	2550	16	FSM	ENSMUSG00000059208.16	ENSMUST00000114385.9	2550	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	733.954748832197	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTTGCCTTTTTTGTTTT	5767	False	NA	-4	True	AATAAA	-17	NA	33904366	33865208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_33865720_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885660_33887958_33888053_33888142_33888151_33889054_33889108_33896247_33896415_33904240
transcript_39946.known	chr17	-	591	2	FSM	ENSMUSG00000059208.16	ENSMUST00000234893.2	591	2	0	0	0	0	multi-exon	FALSE	canonical	3	2194	junction_1	0	3372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTTGCCTTTTTTGTTT	NA	False	NA	-5	True	AATAAA	-16	NA	33867953	33865209	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_33865634_33867786
transcript_39947.known	chr17	-	6109	5	FSM	ENSMUSG00000077450.14	ENSMUST00000057373.14	6109	5	0	0	0	0	multi-exon	FALSE	canonical	3	562	junction_1	25.4411084664171	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTGTCATGATGCTTCA	NA	False	NA	NA	False	NA	NA	NA	33979504	33961457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_33966788_33967483_33967565_33967840_33968035_33968755_33968952_33979196
transcript_39950.known	chr17	-	1544	5	FSM	ENSMUSG00000077450.14	ENSMUST00000173860.8	1544	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	253.00296440951	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCTTTGGTTTTTGTTAT	NA	False	NA	-71	True	NA	NA	NA	33979280	33965723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_33966788_33967483_33967565_33967840_33968035_33968755_33968877_33979196
transcript_39952.known	chr17	-	924	5	FSM	ENSMUSG00000077450.14	ENSMUST00000173987.2	924	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	258.561767282017	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCCCTTCACCAGTGTC	NA	False	NA	NA	False	NA	NA	NA	33979254	33966387	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_33966788_33967483_33967560_33967840_33968035_33968755_33968952_33979196
transcript_39958.known	chr17	-	5822	5	FSM	ENSMUSG00000077450.14	ENSMUST00000235046.2	5822	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	253.00296440951	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTGTCATGATGCTTCA	NA	False	NA	NA	False	NA	NA	NA	33979037	33961457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_33966788_33967483_33967565_33967840_33968035_33968755_33968952_33979016
transcript_39961.known	chr17	+	925	2	FSM	ENSMUSG00000090952.3	ENSMUST00000170103.3	925	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCTGATTTCATTTTC	3477	False	NA	19	True	NA	NA	NA	33978965	33980844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_33979562_33980515
transcript_39962.known	chr17	-	1859	7	FSM	ENSMUSG00000002289.17	ENSMUST00000173869.8	1859	7	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_5	47.4812828620102	211	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAACATTTTGTTCTCTG	NA	False	NA	-11	True	AATAAA	-8	NA	34000517	33993881	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_33994543_33995923_33996206_33996293_33996390_33997345_33997460_33999503_33999618_33999756_33999868_34000036
transcript_39970.known	chr17	+	2641	11	FSM	ENSMUSG00000042099.17	ENSMUST00000048560.11	2641	11	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_2	56.7176339421877	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGTATTGTGTGGATGGAA	NA	False	NA	13	True	AATAAA	-16	NA	34029493	34041892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34029540_34035159_34035220_34036167_34037419_34037499_34037600_34037773_34037972_34038065_34038154_34038753_34038971_34040742_34040889_34040979_34041181_34041259_34041350_34041648
transcript_39989.known	chr17	+	783	6	FSM	ENSMUSG00000042099.17	ENSMUST00000173789.2	783	6	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_2	124.071592236096	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCGTATTGTGTGGATGGA	NA	False	NA	12	True	AATAAA	-15	NA	34029496	34041891	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34029540_34035159_34035220_34040742_34040889_34040979_34041181_34041259_34041350_34041648
transcript_39990.known	chr17	+	646	5	FSM	ENSMUSG00000042099.17	ENSMUST00000234426.2	646	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	140.074979921469	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGACCTAACCATCTTAG	NA	False	NA	NA	False	NA	NA	NA	34029492	34041155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34029540_34035159_34035220_34038753_34038971_34040742_34040889_34040979
transcript_39999.known	chr17	-	1443	1	FSM	ENSMUSG00000067288.14	ENSMUST00000234017.2	1443	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	202	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTTGTCTAGAAATTGG	NA	False	NA	-27	True	AATAAA	-12	NA	34043468	34042025	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34042000_34043500
transcript_4.known	ERCC-00003	+	1007	1	FSM	ERCC-00003A	DQ516784	1007	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1892	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	AAAAAG	-30	NA	0	1007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00003_+_0_1000
transcript_40.known	ERCC-00079	+	628	1	FSM	ERCC-00079A	DQ883652	628	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	643	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	628	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00079_+_0_600
transcript_40000.known	chr17	-	382	4	FSM	ENSMUSG00000067288.14	ENSMUST00000173844.8	382	4	0	0	0	0	multi-exon	FALSE	canonical	3	11527	junction_1	4307.03060897722	190930	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTGTCTAGAAATTGGTT	NA	False	NA	-25	True	AATAAA	-14	NA	34043536	34042023	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34042091_34042166_34042305_34043272_34043321_34043407
transcript_40001.known	chr17	-	271	4	FSM	ENSMUSG00000067288.14	ENSMUST00000166693.3	271	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	9429.71906026662	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTTGTCTAGAAATTGG	NA	False	NA	-27	True	AATAAA	-12	NA	34043450	34042025	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34042068_34042166_34042305_34043272_34043321_34043407
transcript_40002.known	chr17	-	372	3	FSM	ENSMUSG00000067288.14	ENSMUST00000173480.8	372	3	0	0	0	0	multi-exon	FALSE	canonical	3	11527	junction_1	5274.5	6488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTGTCTAGAAATTGGTT	NA	False	NA	-25	True	AATAAA	-14	NA	34043439	34042023	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34042091_34042166_34042305_34043272
transcript_40003.known	chr17	-	342	2	FSM	ENSMUSG00000067288.14	ENSMUST00000173879.8	342	2	0	0	0	0	multi-exon	FALSE	canonical	3	22076	junction_1	0	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGTTTTTCCAGCAGCGT	NA	False	NA	-12	True	AATAAA	-27	NA	34043320	34042010	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34042305_34043272
transcript_4001.known	chr1	-	3490	12	FSM	ENSMUSG00000054387.14	ENSMUST00000067429.10	3490	12	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_11	148.060854140876	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAACCACATGGTCAGG	NA	False	NA	NA	False	NA	NA	NA	132953086	132917582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132932391_132932460_132936874_132936931_132938802_132938937_132940374_132940450_132946514_132946623_132947091_132947170_132952985
transcript_40024.known	chr17	+	419	2	FSM	ENSMUSG00000041881.14	ENSMUST00000174498.2	419	2	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	0	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGTTCTCTTGAACTT	4147	False	NA	11	True	NA	NA	NA	34043618	34044820	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34043792_34044574
transcript_40025.known	chr17	+	528	4	FSM	ENSMUSG00000041881.14	ENSMUST00000048249.8	528	4	0	0	0	0	multi-exon	FALSE	canonical	3	7458	junction_2	513.174650798558	23326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTTTTCTTAGTATTTA	4074	False	NA	33	True	AATATA	-24	NA	34043545	34057291	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34043655_34044574_34044625_34048640_34048791_34057072
transcript_40026.known	chr17	+	438	3	FSM	ENSMUSG00000041881.14	ENSMUST00000173132.8	438	3	0	0	0	0	multi-exon	FALSE	canonical	3	616	junction_1	4049.5	2565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCAATCTGTCTTTTCTT	4106	False	NA	25	True	AATATA	-16	NA	34043577	34057283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34043655_34048640_34048791_34057072
transcript_40028.known	chr17	+	1191	5	FSM	ENSMUSG00000002308.17	ENSMUST00000087559.8	1191	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	143.673240375513	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTGCCTCTAGCCTGT	7328	False	NA	21	True	ATTAAA	-14	NA	34062399	34067725	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34062606_34064989_34065116_34066468_34066700_34066990_34067153_34067259
transcript_40033.known	chr17	+	2209	5	FSM	ENSMUSG00000002308.17	ENSMUST00000002379.15	2209	5	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_3	13.0072095393286	1131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAGCATGGAAACAGAATT	6993	False	NA	NA	False	NA	NA	NA	34062064	34068748	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34062266_34064989_34065116_34066468_34066700_34066990_34067153_34067259
transcript_40034.known	chr17	+	1417	4	FSM	ENSMUSG00000002308.17	ENSMUST00000234506.2	1417	4	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_3	11.8977121983832	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGCCTCTAGCCTGTTT	7055	False	NA	23	True	ATTAAA	-16	NA	34062126	34067727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34062266_34064989_34065116_34066468_34067153_34067259
transcript_40037.known	chr17	-	2357	11	FSM	ENSMUSG00000079553.12	ENSMUST00000173492.9	2357	11	0	0	0	0	multi-exon	FALSE	canonical	1	168	junction_4	135.039586788467	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTTGTTTTGCTTTTTT	9693	False	NA	-7	True	AATAAA	-26	NA	34109635	34094632	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34094844_34100402_34100479_34100961_34101036_34101130_34101422_34102072_34102853_34103562_34103961_34104141_34104193_34104822_34104877_34105549_34105650_34105737_34105876_34109451
transcript_4005.known	chr1	-	7105	11	FSM	ENSMUSG00000054387.14	ENSMUST00000188090.7	7105	11	0	0	0	0	multi-exon	FALSE	canonical	3	199	junction_6	81.9383304687129	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTTTGTCATTATTGG	NA	False	NA	-5	True	ATTAAA	-15	NA	132953154	132913957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132932391_132932460_132936874_132936931_132938802_132938937_132940374_132940450_132946514_132946623_132952985
transcript_40050.known	chr17	+	807	3	FSM	ENSMUSG00000092349.2	ENSMUST00000172817.2	807	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	58	281	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGGTGTTCTGACTTAAAT	1259	False	NA	13	True	NA	NA	NA	34124108	34125649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34124169_34124501_34124892_34125292
transcript_40053.known	chr17	-	978	2	FSM	ENSMUSG00000092564.3	ENSMUST00000172526.3	978	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGTGAACATACGAGCAT	1254	False	NA	NA	False	NA	NA	NA	34128152	34127017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34127561_34127717
transcript_40054.known	chr17	-	462	2	FSM	ENSMUSG00000092564.3	ENSMUST00000174467.2	462	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATATTCCCTTTTACG	1223	False	NA	-5	True	AATAAA	-23	NA	34128183	34127155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34127561_34128126
transcript_40055.known	chr17	-	430	2	FSM	ENSMUSG00000092564.3	ENSMUST00000174321.2	430	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTAGCTCTCCAATGGCTG	1115	False	NA	-117	True	NA	NA	NA	34128291	34127267	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34127561_34128154
transcript_4006.known	chr1	-	1914	11	FSM	ENSMUSG00000054387.14	ENSMUST00000067398.13	1914	11	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_9	94.8116026654966	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTTTATTCACTTCCAAA	NA	False	NA	-58	True	AATACA	-15	NA	132953094	132919091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132932391_132932460_132936874_132936931_132938802_132938937_132940374_132940453_132946514_132946623_132952985
transcript_40061.known	chr17	+	2581	8	FSM	ENSMUSG00000002307.17	ENSMUST00000079421.15	2581	8	0	0	0	0	multi-exon	FALSE	canonical	3	546	junction_5	66.597787546753	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTCCTTTACTTTGCCT	5569	False	NA	12	True	AATAAA	-23	NA	34128418	34134564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34128573_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34132701_34132816_34133037_34134316
transcript_40066.known	chr17	+	2673	8	FSM	ENSMUSG00000002307.17	ENSMUST00000170075.9	2673	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	226.475389481542	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTGTATTCTTTCCTTTA	5725	False	NA	4	True	AATAAA	-15	NA	34128574	34134556	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34128829_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34132701_34132816_34133037_34134316
transcript_40080.known	chr17	+	2898	8	FSM	ENSMUSG00000024308.16	ENSMUST00000025161.10	2898	8	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_6	36.6951033823983	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGGGCCTCTCATTCTCCC	292	False	NA	13	True	AATAAA	-18	NA	34138305	34148266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34138699_34138844_34139025_34139222_34139484_34144383_34144783_34144981_34145324_34145401_34145492_34145600_34145681_34147113
transcript_40082.known	chr17	+	2589	8	FSM	ENSMUSG00000024308.16	ENSMUST00000234247.2	2589	8	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_6	40.4101421902563	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCGGGCCTCTCATTCTCC	597	False	NA	12	True	AATAAA	-17	NA	34138610	34148265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34138699_34138844_34139025_34139222_34139484_34144383_34144783_34144981_34145324_34145401_34145492_34145603_34145681_34147113
transcript_40085.known	chr17	+	387	2	FSM	ENSMUSG00000051390.11	ENSMUST00000174463.2	387	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAAAGGCATGACTTCCA	NA	False	NA	NA	False	NA	NA	NA	34134877	34136116	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34134939_34135790
transcript_40086.known	chr17	+	2612	2	FSM	ENSMUSG00000051390.11	ENSMUST00000053429.11	2612	2	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	0	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTCCCAACACCCCT	NA	False	NA	11	True	ATTAAA	-20	NA	34135144	34138299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34135248_34135790
transcript_40087.known	chr17	-	764	2	FSM	ENSMUSG00000101438.3	ENSMUST00000185388.3	764	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACGCGGCTCCCACCTT	NA	False	NA	NA	False	AATAAA	-32	NA	34139459	34138252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34138601_34139043
transcript_40088.known	chr17	+	3252	18	FSM	ENSMUSG00000041354.17	ENSMUST00000047503.16	3252	18	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_2	23.5177912481234	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTCCCCATCCTTCAGT	3234	False	NA	12	True	AATAAA	-18	NA	34148555	34156661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34149019_34149218_34149416_34150699_34150784_34151013_34151193_34151294_34151346_34151427_34151726_34151982_34152235_34152324_34152429_34152514_34152600_34152685_34152755_34152870_34152946_34153948_34153982_34154107_34154230_34154333_34154430_34154518_34154631_34154713_34155008_34155836_34155952_34156038
transcript_40097.known	chr17	+	753	2	FSM	ENSMUSG00000041354.17	ENSMUST00000172468.2	753	2	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCGGTGTCTCTGGGTCCC	3195	False	NA	NA	False	ATTAAA	-21	NA	34148516	34149469	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34149019_34149218
transcript_40098.known	chr17	+	553	5	FSM	ENSMUSG00000041354.17	ENSMUST00000234226.2	553	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	36.2586196648466	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCAAGGGTCAACTTGACC	4544	False	NA	NA	False	NA	NA	NA	34149865	34151487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34150045_34150699_34150784_34151013_34151193_34151294_34151346_34151427
transcript_4010.known	chr1	-	2010	11	FSM	ENSMUSG00000054387.14	ENSMUST00000185398.7	2010	11	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_6	121.196699625031	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAGGACATATCCAGTCA	NA	False	NA	69	True	ATTAAA	-17	NA	132953092	132918964	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132932391_132932431_132936874_132936931_132938802_132938937_132940374_132940453_132946514_132946623_132952985
transcript_40106.known	chr17	-	481	5	FSM	ENSMUSG00000024309.16	ENSMUST00000179418.9	481	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	500.831808095293	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGCCTACTTTACAGCCA	NA	False	NA	-19	True	AATAAA	-13	NA	34159284	34157896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34158086_34158512_34158638_34158721_34158793_34158997_34159080_34159270
transcript_40107.known	chr17	-	560	5	FSM	ENSMUSG00000024309.16	ENSMUST00000174048.8	560	5	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_4	444.939602642876	1035	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTACTTTACAGCCAGTCT	NA	False	NA	-15	True	AATAAA	-17	NA	34159299	34157892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34158086_34158512_34158638_34158721_34158793_34158997_34159140_34159270
transcript_40111.known	chr17	-	396	4	FSM	ENSMUSG00000024309.16	ENSMUST00000174426.2	396	4	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	515.769974568767	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGCCAATAAAATGTAAACA	NA	False	NA	-42	True	NA	NA	NA	34159304	34157919	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34158086_34158512_34158638_34158721_34158793_34159270
transcript_40114.known	chr17	-	685	3	FSM	ENSMUSG00000024309.16	ENSMUST00000173678.3	685	3	0	0	0	0	multi-exon	FALSE	canonical	3	1189	junction_1	13.5	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGGCCTTTCTTGCTGT	NA	False	NA	NA	False	NA	NA	NA	34159305	34158331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34158638_34158721_34158793_34158997
transcript_40115.known	chr17	-	807	4	FSM	ENSMUSG00000024309.16	ENSMUST00000025163.14	807	4	0	0	0	0	multi-exon	FALSE	canonical	3	1067	junction_1	64.8194072447099	4482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGATTCTGTTTTGCTTTC	NA	False	NA	83	True	NA	NA	NA	34159317	34157794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34158086_34158512_34158638_34158721_34158793_34158997
transcript_40116.known	chr17	-	871	3	FSM	ENSMUSG00000024309.16	ENSMUST00000173363.8	871	3	0	0	0	0	multi-exon	FALSE	canonical	3	1067	junction_1	61	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGCCTACTTTACAGCCA	NA	False	NA	-19	True	AATAAA	-13	NA	34159278	34157896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34158086_34158512_34158638_34158721
transcript_40118.known	chr17	+	2229	15	FSM	ENSMUSG00000024312.11	ENSMUST00000025170.11	2229	15	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_8	25.4498305996527	444	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTCTGGACCATCCTGTA	1979	False	NA	13	True	ATTAAA	-16	NA	34159633	34168671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34159781_34159858_34160066_34160165_34160247_34160379_34160493_34160606_34160695_34160795_34160858_34162319_34162425_34162531_34162683_34162774_34162911_34163455_34163556_34167193_34167508_34167616_34167712_34167809_34167906_34168046_34168161_34168251
transcript_40123.nnic	chr17	-	1562	2	Genic_Genomic	ENSMUSG00000067370.5	novel	1580	1	NA	NA	-351	2	multi-exon	FALSE	canonical	3	7	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCAGCGTCTTCACCAGGC	NA	False	NA	0	True	AATAAA	-19	NA	34170813	34168880	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr17_-_34170253_34170623
transcript_40124.known	chr17	-	1580	1	FSM	ENSMUSG00000067370.5	ENSMUST00000087543.5	1580	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGCAGCGTCTTCACCAG	NA	False	NA	-2	True	AATAAA	-17	NA	34170462	34168882	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34168900_34170500
transcript_40125.known	chr17	+	3383	20	FSM	ENSMUSG00000024319.19	ENSMUST00000025178.17	3383	20	0	0	0	0	multi-exon	FALSE	canonical	2	228	junction_10	32.2850016205651	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTGATTTTGTACTGT	NA	False	NA	31	True	NA	NA	NA	34174785	34186009	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34175157_34175903_34175989_34176822_34176876_34176990_34177067_34177263_34177332_34177574_34177751_34178198_34178350_34178968_34179070_34179160_34179294_34179420_34179479_34180084_34180219_34180586_34180743_34181040_34181160_34181396_34181521_34181699_34181796_34181883_34181992_34182151_34182218_34184254_34184367_34184634_34184754_34184932
transcript_40147.known	chr17	-	715	6	FSM	ENSMUSG00000008668.16	ENSMUST00000234380.2	715	6	0	0	0	0	multi-exon	FALSE	canonical	1	30	junction_3	10301.0144238322	2619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	34174637	34170972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34171093_34171194_34171287_34171376_34171566_34172713_34172883_34174051_34174151_34174591
transcript_40148.known	chr17	-	560	5	FSM	ENSMUSG00000008668.16	ENSMUST00000008812.9	560	5	0	0	0	0	multi-exon	FALSE	canonical	3	20050	junction_4	1387.25833481007	69226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	34174651	34170972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34171093_34171194_34171287_34171376_34171566_34174051_34174151_34174591
transcript_4015.known	chr1	-	2799	10	FSM	ENSMUSG00000054387.14	ENSMUST00000191212.7	2799	10	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_5	107.251521615728	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATATAAAAGAAAGCATT	NA	False	NA	NA	False	NA	NA	NA	132953095	132918139	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132936874_132936931_132938802_132938937_132940374_132940453_132946514_132946623_132952985
transcript_40158.known	chr17	-	527	5	FSM	ENSMUSG00000008668.16	ENSMUST00000174609.9	527	5	0	0	0	0	multi-exon	FALSE	canonical	3	518	junction_2	9115.60860557319	8096	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	34174637	34170972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34171093_34171194_34171268_34171376_34171566_34174051_34174151_34174591
transcript_40165.known	chr17	-	632	4	FSM	ENSMUSG00000008668.16	ENSMUST00000174175.8	632	4	0	0	0	0	multi-exon	FALSE	canonical	3	20050	junction_3	1274.65978031613	644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCCGTCTCAGTTTGTCT	NA	False	NA	NA	False	AATAAA	-18	NA	34174634	34170973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34171093_34171194_34171566_34174051_34174151_34174591
transcript_40168.known	chr17	-	395	2	FSM	ENSMUSG00000008668.16	ENSMUST00000174662.2	395	2	0	0	0	0	multi-exon	FALSE	canonical	3	20050	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGTGGTCTGCAGAAGCTA	NA	False	NA	NA	False	NA	NA	NA	34174634	34173798	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34174151_34174591
transcript_40169.known	chr17	-	974	4	FSM	ENSMUSG00000008668.16	ENSMUST00000174620.3	974	4	0	0	0	0	multi-exon	FALSE	canonical	3	21077	junction_1	1022.38979302851	574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCTCCGTCTCAGTTTGT	NA	False	NA	NA	False	AATAAA	-16	NA	34174627	34170975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34171093_34171194_34171287_34171376_34171566_34174051
transcript_40170.known	chr17	-	499	3	FSM	ENSMUSG00000008668.16	ENSMUST00000174758.8	499	3	0	0	0	0	multi-exon	FALSE	canonical	3	21077	junction_1	1139	2533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	34171663	34170972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34171093_34171194_34171287_34171376
transcript_40171.known	chr17	-	1567	5	FSM	ENSMUSG00000067203.9	ENSMUST00000235582.2	1567	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	6.10327780786685	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGGAGAACCTTCCAGAA	3644	False	NA	NA	False	AATAAA	-5	NA	34197801	34193632	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34194054_34194470_34194588_34194714_34194990_34196844_34197498_34197700
transcript_40176.known	chr17	-	1570	8	FSM	ENSMUSG00000061232.17	ENSMUST00000172912.8	1570	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_6	28.0698836361489	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTATGCTGTGTGTATCTG	NA	False	NA	-4	True	AATAAA	-32	NA	34219263	34214990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34215451_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218521_34218707_34218978_34219167
transcript_40180.known	chr17	-	1065	8	FSM	ENSMUSG00000061232.17	ENSMUST00000238098.2	1065	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	35.1840641107155	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGACAGCTGCCTGGAGT	NA	False	NA	NA	False	NA	NA	NA	34219225	34215448	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34215478_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218485_34218707_34218978_34219167
transcript_40181.known	chr17	-	1619	8	FSM	ENSMUSG00000061232.17	ENSMUST00000025181.18	1619	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_6	28.3196045170126	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAATGATAGATGAATAAA	NA	False	NA	-40	True	NA	NA	NA	34219321	34215026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34215478_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218521_34218707_34218978_34219167
transcript_40187.nic	chr17	-	1773	7	NIC	ENSMUSG00000061232.17	novel	1619	8	NA	NA	-5	0	intron_retention	FALSE	canonical	3	37	junction_6	25.5907969568923	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCAGAATCTGGGTCACT	NA	False	NA	-20	True	AATAAA	-16	NA	34219268	34215006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_34215478_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218978_34219167
transcript_40192.known	chr17	-	1567	7	FSM	ENSMUSG00000061232.17	ENSMUST00000236740.2	1567	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	32.8920794248234	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGTCACTATGCTGTGT	NA	False	NA	-11	True	AATAAA	-25	NA	34219279	34214997	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34215478_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218521_34218707_34218978_34219167
transcript_40193.known	chr17	-	1874	6	FSM	ENSMUSG00000061232.17	ENSMUST00000114311.11	1874	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	25.8038756778899	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTATGCTGTGTGTATCT	NA	False	NA	-5	True	AATAAA	-31	NA	34219257	34214991	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34215834_34216011_34216132_34216258_34216535_34218244_34218521_34218707_34218978_34219167
transcript_40195.known	chr17	-	2034	7	FSM	ENSMUSG00000024325.9	ENSMUST00000025183.9	2034	7	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	8.5764535535124	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTAAGTAGTGAAACCCTG	NA	False	NA	NA	False	ATTAAA	-26	NA	34243654	34239765	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34240458_34240656_34240931_34241269_34241660_34241952_34242169_34242266_34242428_34243262_34243393_34243483
transcript_40203.known	chr17	-	965	9	FSM	ENSMUSG00000073422.12	ENSMUST00000045467.14	965	9	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_8	37.2237743250198	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCGGTTCTTCTTGTGTC	NA	False	NA	-1	True	AATAAA	-23	NA	34247030	34245006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34245200_34245369_34245445_34245636_34245680_34245824_34245910_34245989_34246076_34246176_34246270_34246379_34246497_34246596_34246815_34246975
transcript_40205.known	chr17	-	1550	8	FSM	ENSMUSG00000024327.17	ENSMUST00000169397.9	1550	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_7	197.419371296905	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGTGAGGTGACCTGTCCT	NA	False	NA	-73	True	NA	NA	NA	34250636	34247769	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34249797_34250237_34250521
transcript_4021.known	chr1	+	639	1	FSM	ENSMUSG00000100228.2	ENSMUST00000186115.2	639	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	178	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCATGCGTAGTGTAATA	NA	False	NA	NA	False	NA	NA	NA	132953538	132954177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_132953500_132954200
transcript_40211.known	chr17	-	2320	7	FSM	ENSMUSG00000024327.17	ENSMUST00000025186.16	2320	7	0	0	0	0	multi-exon	FALSE	canonical	3	543	junction_6	39.6512575112344	645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCCTTTGTCTTTATGTG	NA	False	NA	-2	True	AATAAA	-26	NA	34250594	34247242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34249797
transcript_40214.nic	chr17	-	1717	7	NIC	ENSMUSG00000024327.17	novel	1550	8	NA	NA	-63	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_6	218.983763984659	504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGCAGCCTTTGTCTTTA	NA	False	NA	-6	True	AATAAA	-22	NA	34250719	34247246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34250521
transcript_40218.known	chr17	-	745	6	FSM	ENSMUSG00000073422.12	ENSMUST00000235579.2	745	6	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_3	24.5324275195098	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGTTGTAATGAGAAAGTG	NA	False	NA	NA	False	AAAACA	-6	NA	34246701	34245328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34245445_34245636_34245680_34245824_34245910_34245989_34246076_34246176_34246270_34246379
transcript_4022.known	chr1	+	5594	2	FSM	ENSMUSG00000046062.6	ENSMUST00000052529.4	5594	2	0	0	0	0	multi-exon	FALSE	canonical	3	372	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTATGTGACTTTATGTAT	5567	False	NA	15	True	AATAAA	-20	NA	133058880	133067521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_133061354_133064400
transcript_40221.known	chr17	-	2433	6	FSM	ENSMUSG00000024327.17	ENSMUST00000170491.8	2433	6	0	0	0	0	multi-exon	FALSE	canonical	3	568	junction_4	31.8282893036996	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGCAGCCTTTGTCTTTA	NA	False	NA	-6	True	AATAAA	-22	NA	34250622	34247246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539
transcript_40222.known	chr17	-	534	2	FSM	ENSMUSG00000073422.12	ENSMUST00000173616.8	534	2	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_1	0	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCGGTTCTTCTTGTGTC	NA	False	NA	-1	True	AATAAA	-23	NA	34245732	34245006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34245445_34245636
transcript_40223.known	chr17	+	2577	10	FSM	ENSMUSG00000039656.18	ENSMUST00000174299.9	2577	10	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_7	37.5838157971825	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTTTCTGGACTGAGAT	NA	False	NA	21	True	CATAAA	-21	NA	34250825	34257373	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34251198_34251800_34252019_34252528_34252686_34252995_34253176_34254627_34254801_34255298_34255429_34255598_34255732_34255846_34255939_34256140_34256247_34256357
transcript_40224.known	chr17	+	2283	10	FSM	ENSMUSG00000039656.18	ENSMUST00000116612.3	2283	10	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	64.8690989609074	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAGCCATTTTCTGGAC	NA	False	NA	15	True	CATAAA	-15	NA	34251374	34257367	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34251459_34251800_34252019_34252528_34252686_34252995_34253176_34254627_34254801_34255298_34255429_34255598_34255732_34255846_34255939_34256140_34256247_34256357
transcript_40226.known	chr17	+	1088	5	FSM	ENSMUSG00000024334.10	ENSMUST00000025192.8	1088	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	7.14142842854285	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCGTGTGTCCTTTTCACG	3765	False	NA	NA	False	ACTAAA	-16	NA	34311313	34314208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34311503_34312806_34313056_34313281_34313564_34313656_34313793_34313976
transcript_40229.nic	chr17	+	1166	4	ISM	ENSMUSG00000024334.10	ENSMUST00000025192.8	1088	5	1347	-121	1265	121	3prime_fragment	FALSE	canonical	2	3	junction_1	6.79869268479038	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGCCTTGTTGACCCAT	546	False	NA	NA	False	AGTAAA	-19	NA	34312660	34314329	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_34313056_34313281_34313564_34313656_34313793_34313976
transcript_40232.known	chr17	+	1108	5	FSM	ENSMUSG00000037649.11	ENSMUST00000236322.2	1108	5	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	3.83242742918897	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGTACTAGACAAGTGTCTA	6798	False	NA	28	True	AATAAA	-36	NA	34354601	34358074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34354733_34356087_34356373_34356876_34357156_34357380_34357510_34357790
transcript_40234.known	chr17	+	1404	6	FSM	ENSMUSG00000079547.5	ENSMUST00000114232.4	1404	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	6.61513416341649	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAAGTTTGTCCTGGGTTT	NA	False	NA	NA	False	AATAAA	-21	NA	34372045	34379204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34372428_34374406_34374689_34376219_34376505_34378317_34378435_34378602_34378639_34378902
transcript_40239.known	chr17	+	2953	11	FSM	ENSMUSG00000037321.18	ENSMUST00000170086.8	2953	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	3.91024295920343	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTCCCGTTTCTTAGCT	6991	False	NA	NA	False	AATAAA	-20	NA	34406526	34416199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34407380_34408151_34408267_34408403_34408535_34409536_34409743_34410302_34410501_34411810_34411940_34412101_34412291_34412458_34412633_34412854_34413018_34413817_34413955_34415541
transcript_40241.known	chr17	-	1352	6	FSM	ENSMUSG00000096727.4	ENSMUST00000174576.4	1352	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	3.70944739819828	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTCAAAGTCTGCGAGACT	9780	False	NA	NA	False	NA	NA	NA	34406738	34400960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34401326_34402062_34402205_34402588_34402719_34403255_34403388_34404703_34404772_34406223
transcript_40244.known	chr17	+	1212	6	FSM	ENSMUSG00000073421.7	ENSMUST00000040828.7	1212	6	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	17.3735431043872	273	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGCTTTGATAATTGCTG	NA	False	NA	12	True	NA	NA	NA	34482182	34488393	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34482380_34483734_34484008_34486309_34486592_34486896_34487008_34487434_34487459_34488068
transcript_40248.known	chr17	-	1128	5	FSM	ENSMUSG00000036594.16	ENSMUST00000040655.14	1128	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	1.5	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGTTTGGTTTTTCTTGT	NA	False	NA	NA	False	AATAAA	-28	NA	34506797	34501717	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34501998_34502128_34502304_34502548_34502831_34503261_34503511_34506655
transcript_4025.known	chr1	+	3688	2	FSM	ENSMUSG00000046062.6	ENSMUST00000122956.2	3688	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTATGTGACTTTATGTAT	5768	False	NA	15	True	AATAAA	-20	NA	133059081	133067521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_133059649_133064400
transcript_40255.known	chr17	+	1171	6	FSM	ENSMUSG00000060586.12	ENSMUST00000074557.11	1171	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	76.3910989579283	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGCTTCATAGAGTTTCA	NA	False	NA	12	True	AATAAA	-16	NA	34524990	34535173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34525022_34528564_34528835_34533143_34533426_34533889_34534128_34534529_34534554_34534847
transcript_40257.known	chr17	+	1669	6	FSM	ENSMUSG00000060586.12	ENSMUST00000235530.2	1669	6	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_2	11.7064085013295	1788	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATTGTCAATTAGAGTAT	NA	False	NA	NA	False	AATAAA	-16	NA	34524840	34535648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34525022_34528564_34528835_34533143_34533426_34534016_34534128_34534529_34534554_34534847
transcript_40262.known	chr17	+	1082	6	FSM	ENSMUSG00000060586.12	ENSMUST00000236232.2	1082	6	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_1	73.665731517443	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGCTTCATAGAGTTTCA	NA	False	NA	12	True	AATAAA	-16	NA	34524899	34535173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34525022_34528617_34528835_34533143_34533426_34534016_34534128_34534529_34534554_34534847
transcript_40274.known	chr17	-	1036	4	FSM	ENSMUSG00000036322.12	ENSMUST00000235482.2	1036	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACGTGGTTTTTGTGCCTGA	NA	False	NA	NA	False	AATAAA	-14	NA	34563619	34560932	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34561270_34561895_34562065_34562601_34562884_34563371
transcript_40276.nic	chr17	+	921	4	ISM	ENSMUSG00000062638.12	ENSMUST00000080254.7	2113	10	5030	0	4276	0	3prime_fragment	FALSE	canonical	2	4	junction_1	3.29983164553722	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGATATCATGGTTGCAC	2689	False	NA	NA	False	GATAAA	-20	NA	34601135	34605002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_34601242_34601435_34601463_34603334_34603362_34604241
transcript_40277.nnic	chr17	-	2416	9	NNC	ENSMUSG00000061728.6	novel	1763	9	NA	NA	4042	608	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	2.78388218141501	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCTCATATTGTTTAGTTG	NA	False	NA	NA	False	ATTAAA	-19	NA	34762583	34751242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_34752582_34752929_34752957_34756066_34756094_34759687_34759715_34759796_34759818_34760022_34760224_34760335_34760618_34761427_34761779_34762442
transcript_40280.known	chr17	+	6591	30	FSM	ENSMUSG00000015468.15	ENSMUST00000015612.14	6591	30	0	0	0	0	multi-exon	TRUE	canonical	3	55	junction_11	11.3350235386032	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCTGAGGGACTAAAGGG	NA	False	NA	14	True	AATAAA	-23	NA	34783241	34807477	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34783484_34784274_34784357_34784446_34784743_34786315_34786664_34787137_34787261_34787366_34787604_34787690_34787847_34789008_34789204_34790710_34790825_34791469_34791584_34791651_34791775_34792722_34792883_34794036_34794183_34794380_34794534_34795382_34795501_34795742_34795831_34796391_34796543_34796921_34797107_34799893_34800147_34800352_34800466_34801372_34801897_34802323_34802708_34802802_34802979_34803385_34803606_34803754_34803825_34803964_34804104_34804878_34805184_34805500_34805649_34806090_34806189_34806347
transcript_40281.known	chr17	+	3068	9	FSM	ENSMUSG00000034673.15	ENSMUST00000038149.13	3068	9	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	5.02338282435253	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTAGTTGAGATTTTTTT	NA	False	NA	7	True	AATAAA	-20	NA	34811236	34816374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34811749_34812545_34812620_34812840_34813089_34813211_34813403_34813555_34813692_34813774_34813929_34814238_34814328_34814601_34814689_34814797
transcript_40284.known	chr17	+	1343	4	FSM	ENSMUSG00000034786.18	ENSMUST00000038244.15	1343	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	3.29983164553722	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGACTGGTATCTGGGG	NA	False	NA	5	True	AATAAA	-18	NA	34808779	34810728	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34809235_34809434_34809538_34809715_34809916_34810143
transcript_40285.known	chr17	+	1019	4	FSM	ENSMUSG00000034786.18	ENSMUST00000150924.2	1019	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	4.92160768674447	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGACTGGTATCTGGGG	NA	False	NA	5	True	AATAAA	-18	NA	34809065	34810728	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34809235_34809434_34809538_34809753_34809916_34810143
transcript_40289.known	chr17	-	1238	6	FSM	ENSMUSG00000015478.14	ENSMUST00000015622.8	1238	6	0	0	0	0	multi-exon	FALSE	canonical	3	1022	junction_5	40.2124358874217	5359	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTCCCCAGTCTCTCCC	795	False	NA	-23	True	NA	NA	NA	34822664	34820064	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34820641_34820714_34820833_34820907_34820963_34821058_34821172_34821264_34821284_34822307
transcript_40291.known	chr17	-	1729	9	FSM	ENSMUSG00000015474.17	ENSMUST00000064953.15	1729	9	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_8	20.0249843945008	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGGCTTGGCTTATTCCC	3988	False	NA	-1	True	AATAAA	-16	NA	34846351	34835636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34836462_34836637_34836693_34841824_34841910_34842004_34842089_34844610_34844719_34844809_34844906_34845432_34845587_34845778_34845970_34846220
transcript_40292.known	chr17	-	1710	9	FSM	ENSMUSG00000015474.17	ENSMUST00000171121.9	1710	9	0	0	0	0	multi-exon	TRUE	canonical	3	52	junction_2	7.8700381193486	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGGCTTGGCTTATTCCCA	3930	False	NA	0	True	AATAAA	-17	NA	34846409	34835635	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34836462_34836637_34836693_34841824_34841910_34842004_34842089_34844610_34844719_34844809_34844906_34845432_34845587_34845778_34845970_34846298
transcript_40293.known	chr17	-	1139	9	FSM	ENSMUSG00000015474.17	ENSMUST00000166040.9	1139	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_8	20.3312413541328	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCCCCACCAGGGCTCCCC	3326	False	NA	NA	False	NA	NA	NA	34847013	34836202	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34836462_34836637_34836693_34841824_34841910_34842004_34842089_34844610_34844719_34844809_34844906_34845432_34845587_34845778_34845970_34846906
transcript_40294.nic	chr17	-	1708	9	NIC	ENSMUSG00000015474.17	novel	1729	9	NA	NA	-188	0	combination_of_known_junctions	FALSE	canonical	2	13	junction_8	19.4148783153539	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGGCTTGGCTTATTCCC	9885	False	NA	-1	True	AATAAA	-16	NA	34847201	34835636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_34836462_34836637_34836693_34841824_34841910_34842004_34842089_34844610_34844719_34844809_34844906_34845432_34845587_34845778_34845970_34847091
transcript_40298.known	chr17	+	1105	7	FSM	ENSMUSG00000034254.18	ENSMUST00000173973.8	1105	7	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	44.7688507781917	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCTTCTTCCTCCCTGTA	NA	False	NA	NA	False	NA	NA	NA	34824834	34831417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34825146_34829418_34829619_34829845_34829901_34830247_34830424_34830578_34830675_34830764_34830841_34831226
transcript_40299.known	chr17	+	2190	7	FSM	ENSMUSG00000034254.18	ENSMUST00000037489.15	2190	7	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	5.07991688470939	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTTGATATCCATATCTT	NA	False	NA	44	True	AATAAA	-44	NA	34824834	34832423	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34825146_34829418_34829619_34829845_34829980_34830247_34830424_34830578_34830675_34830764_34830841_34831226
transcript_40306.nnic	chr17	-	1161	5	NNC	ENSMUSG00000015474.17	novel	1729	9	NA	NA	3578	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	26.7254560297855	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGGCTTGGCTTATTCCC	8015	False	NA	-1	True	AATAAA	-16	NA	34842324	34835636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_34836462_34836637_34836693_34841824_34841910_34842004_34842089_34842212
transcript_40309.known	chr17	-	1750	8	FSM	ENSMUSG00000015474.17	ENSMUST00000171376.8	1750	8	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	8.14160391358572	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGTGGCTTGGCTTATTCC	4217	False	NA	-2	True	AATAAA	-15	NA	34846122	34835637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_34836462_34836637_34836693_34841824_34841910_34842004_34842089_34844610_34844719_34844809_34844906_34845432_34845587_34845778
transcript_40311.known	chr17	+	1270	2	FSM	ENSMUSG00000033739.9	ENSMUST00000036720.9	1270	2	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	0	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTGTGGTCTGTGTTGTG	7359	False	NA	4	True	ATTAAA	-17	NA	34863737	34865298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34863928_34864218
transcript_40312.known	chr17	+	257	2	FSM	ENSMUSG00000033739.9	ENSMUST00000174796.2	257	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAACGCCCAGCAAATCTT	7436	False	NA	NA	False	AATGAA	-35	NA	34863814	34864296	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34863928_34864152
transcript_40313.nnic	chr17	+	1214	2	NNC	ENSMUSG00000033739.9	novel	1270	2	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	41	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTGTGGTCTGTGTTGTG	7408	False	NA	4	True	ATTAAA	-17	NA	34863786	34865298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_34863928_34864225
transcript_40315.known	chr17	+	2315	18	FSM	ENSMUSG00000015461.16	ENSMUST00000173984.2	2315	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	91.9084469989445	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCCCCGAGGGTACCTC	9806	False	NA	NA	False	AATATA	-31	NA	34866184	34873853	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_34866300_34866633_34866714_34867192_34867272_34867550_34867643_34868091_34868228_34869274_34869361_34869473_34869610_34869693_34869826_34869959_34870094_34870535_34870722_34870803_34870896_34871621_34871802_34871962_34872071_34872187_34872270_34872475_34872547_34872677_34872790_34872894_34872980_34873444
transcript_40318.nic	chr17	+	1779	11	ISM	ENSMUSG00000015461.16	ENSMUST00000015605.15	2566	18	-28	2726	-28	245	5prime_fragment	FALSE	canonical	3	325	junction_9	26.4688496161053	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTGACTTTTGTATGCAC	9713	False	NA	NA	False	AATAAA	-23	NA	34866091	34871322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_34866291_34866633_34866714_34867192_34867272_34867550_34867643_34868091_34868228_34869274_34869361_34869473_34869610_34869693_34869826_34869959_34870094_34870535_34870722_34870803
transcript_4032.nic	chr1	+	868	4	ISM	ENSMUSG00000103421.2	ENSMUST00000094557.7	1865	5	9283	1083	9193	893	3prime_fragment	FALSE	canonical	1	1	junction_1	2.16024689946929	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGAGATTTGGCGTTGATG	725	False	NA	NA	False	ATTAAA	-20	NA	133246820	133249681	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_133247111_133247890_133248070_133248728_133248793_133249346
transcript_40321.known	chr17	-	1120	7	FSM	ENSMUSG00000061207.12	ENSMUST00000077477.12	1120	7	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	4.59770474137791	674	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTCTGTGTCCTTTGT	5573	False	NA	-4	True	AATAAA	-16	NA	35055921	35042968	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35043301_35043489_35043638_35043726_35043825_35050988_35051129_35051421_35051518_35055405_35055543_35055752
transcript_40322.known	chr17	-	805	5	FSM	ENSMUSG00000061207.12	ENSMUST00000161885.8	805	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	37.4457941563535	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCTTTCTGTGTCCTTTG	5651	False	NA	-5	True	AATAAA	-15	NA	35055843	35042969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35043301_35043489_35043638_35043726_35043825_35055405_35055543_35055752
transcript_40323.known	chr17	-	3951	28	FSM	ENSMUSG00000040356.17	ENSMUST00000046022.16	3951	28	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_20	16.8071446039882	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTTGGAGTATGGTAACT	5305	False	NA	-23	True	AATAAA	-13	NA	35069186	35058219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35058582_35058666_35058808_35058972_35059192_35059271_35059383_35059485_35059697_35059833_35059961_35060043_35060195_35060417_35060523_35060646_35060785_35060919_35061058_35061787_35062019_35063313_35063425_35063590_35063804_35063979_35064077_35064143_35064291_35064624_35064732_35064803_35064889_35065002_35065150_35065497_35065644_35065842_35065972_35066118_35066301_35066383_35066438_35066722_35066798_35066879_35066995_35067083_35067202_35067300_35067411_35068871_35068976_35069109
transcript_40325.known	chr17	+	1447	7	FSM	ENSMUSG00000040482.17	ENSMUST00000180043.8	1447	7	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_1	19.7434940057619	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTGCTGTGTCTGAATG	2976	False	NA	30	True	AATAAA	-19	NA	35055994	35058162	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35056193_35056368_35056731_35056876_35057113_35057201_35057422_35057523_35057660_35057788_35057884_35057962
transcript_40329.known	chr17	+	1519	7	FSM	ENSMUSG00000040482.17	ENSMUST00000046244.15	1519	7	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	48.3439643480847	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAAGCACTCTGGTTTGC	2976	False	NA	77	True	NA	NA	NA	35055994	35058209	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35056218_35056368_35056731_35056876_35057113_35057201_35057422_35057523_35057660_35057788_35057884_35057962
transcript_40330.nic	chr17	+	1567	6	NIC	ENSMUSG00000040482.17	novel	1447	7	NA	NA	-31	0	intron_retention	FALSE	canonical	3	133	junction_1	20.3115730557729	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTGCTGTGTCTGAATG	2945	False	NA	30	True	AATAAA	-19	NA	35055963	35058162	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_35056193_35056368_35056731_35056876_35057422_35057523_35057660_35057788_35057884_35057962
transcript_4035.nnic	chr1	+	641	3	NIC	ENSMUSG00000115958.2	novel	656	3	NA	NA	-60	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	18	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTGTTATTTTTCC	5548	False	NA	4	True	AATAAA	-16	NA	133251643	133257460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_133251787_133254947_133255079_133257093
transcript_40351.nnic	chr17	+	1341	12	NNC	ENSMUSG00000024369.17	novel	1381	11	NA	NA	-2	20845	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	169.284639752691	349	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTAAGGCATTCAGCATC	37	False	NA	NA	False	NA	NA	NA	35069371	35096193	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_35069439_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063_35075239_35096135
transcript_40352.nnic	chr17	+	1342	12	NNC	ENSMUSG00000024369.17	novel	1381	11	NA	NA	-2	20845	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	169.284639752691	477	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTAAGGCATTCAGCATC	37	False	NA	NA	False	NA	NA	NA	35069371	35096193	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_35069439_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063_35075250_35096145
transcript_40355.nnic	chr17	+	1467	12	NNC	ENSMUSG00000024369.17	novel	1399	11	NA	NA	-2	20845	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	161.854745613732	459	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTAAGGCATTCAGCATC	37	False	NA	NA	False	NA	NA	NA	35069371	35096193	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_35069565_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063_35075239_35096135
transcript_40356.nnic	chr17	+	1468	12	NNC	ENSMUSG00000024369.17	novel	1399	11	NA	NA	-2	20845	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	161.854745613732	589	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTAAGGCATTCAGCATC	37	False	NA	NA	False	NA	NA	NA	35069371	35096193	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_35069565_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063_35075250_35096145
transcript_4036.known	chr1	+	656	3	FSM	ENSMUSG00000115958.2	ENSMUST00000195286.5	656	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	17.5	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTGTTATTTTTCC	5608	False	NA	4	True	AATAAA	-16	NA	133251703	133257460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_133251787_133254872_133255079_133257093
transcript_40364.known	chr17	+	1381	11	FSM	ENSMUSG00000024369.17	ENSMUST00000165953.3	1381	11	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_1	101.735146335964	813	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTATTGTAACTGCTTT	4	True	NA	NA	False	AAAAAG	-13	NA	35069383	35075348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35069439_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063
transcript_40369.known	chr17	+	1399	11	FSM	ENSMUSG00000024369.17	ENSMUST00000173357.8	1399	11	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_1	84.0802592764794	757	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCTCCGTCAGCCTCTAG	-6	True	NA	30	True	AGTAAA	-20	NA	35069373	35075230	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35069565_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063
transcript_4037.nnic	chr1	+	592	3	NNC	ENSMUSG00000116158.2	novel	496	2	NA	NA	-1206	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	24	35	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTGTTATTTTTCC	7648	False	NA	4	True	AATAAA	-16	NA	133253743	133257460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_133253838_133254947_133255079_133257093
transcript_40372.known	chr17	+	1607	11	FSM	ENSMUSG00000024369.17	ENSMUST00000097343.11	1607	11	0	0	0	0	multi-exon	TRUE	canonical	3	52	junction_1	144.013228559046	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTTGTTATTGTAACTGC	32	False	NA	NA	False	AAAAAG	-10	NA	35069366	35075345	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35069651_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063
transcript_40386.known	chr17	+	961	7	FSM	ENSMUSG00000024369.17	ENSMUST00000173065.8	961	7	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	170.468635107915	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGGACCGAGATCGGGAAC	4	True	NA	NA	False	NA	NA	NA	35069383	35073065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35069651_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783
transcript_40387.known	chr17	-	2641	18	FSM	ENSMUSG00000024371.15	ENSMUST00000025230.15	2641	18	0	0	0	0	multi-exon	TRUE	canonical	1	4	junction_13	3.65842630716852	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTCTGTCTTATGTCTT	NA	False	NA	0	True	AATAAA	-18	NA	35101076	35081580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35082008_35082154_35082205_35082320_35082451_35082599_35082692_35082838_35082916_35083020_35083187_35083283_35083402_35083487_35083583_35083704_35083846_35085493_35085584_35091342_35091484_35092437_35092577_35094863_35094998_35095129_35095232_35095309_35095487_35098857_35099044_35100547_35100773_35100925
transcript_4039.nnic	chr1	+	838	3	NNC	ENSMUSG00000116158.2	novel	496	2	NA	NA	-1069	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	23	70	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTGTTATTTTTCC	7785	False	NA	4	True	AATAAA	-16	NA	133253880	133257460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_133254146_133254872_133255079_133257093
transcript_40390.nic	chr17	-	766	5	NIC	ENSMUSG00000024371.15	novel	407	4	NA	NA	-187	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_2	4	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGGCTGGGTGTTGACAT	4586	False	NA	NA	False	AATAAA	-12	NA	35117428	35112325	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_35112451_35112586_35112677_35113870_35113912_35114382_35114544_35117079
transcript_40393.known	chr17	-	535	4	FSM	ENSMUSG00000024371.15	ENSMUST00000174279.2	535	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	0.942809041582063	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAATGGCTGGGTGTTGA	4773	False	NA	NA	False	AATAAA	-9	NA	35117241	35112328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35112451_35112586_35112677_35114382_35114544_35117079
transcript_40394.nnic	chr17	-	531	4	NNC	ENSMUSG00000024371.15	novel	535	4	NA	NA	-187	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	3.39934634239519	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGGCTGGGTGTTGACAT	4586	False	NA	NA	False	AATAAA	-12	NA	35117428	35112325	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_35112451_35112586_35112677_35114382_35114544_35117273
transcript_40396.known	chr17	+	1858	2	FSM	ENSMUSG00000049823.10	ENSMUST00000052778.10	1858	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAAAGTTGAAAGTTTTGG	2760	False	NA	26	True	CATAAA	-34	NA	35113534	35115843	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35113746_35114196
transcript_40399.nic	chr17	+	1031	5	ISM	ENSMUSG00000013787.16	ENSMUST00000013931.12	4026	27	12231	0	227	0	3prime_fragment	FALSE	canonical	3	414	junction_3	11.4972822875669	253	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTGGTGATTGTTTCAG	1748	False	NA	19	True	AATAAA	-20	NA	35130177	35133027	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_35130455_35130554_35130642_35131364_35131444_35131609_35131786_35132615
transcript_4040.nnic	chr1	+	763	3	NNC	ENSMUSG00000116158.2	novel	496	2	NA	NA	-1069	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	21.5	73	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTGTTATTTTTCC	7785	False	NA	4	True	AATAAA	-16	NA	133253880	133257460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_133254146_133254947_133255079_133257093
transcript_40401.known	chr17	+	2261	21	FSM	ENSMUSG00000007034.16	ENSMUST00000007249.15	2261	21	0	0	0	0	multi-exon	TRUE	non_canonical	1	2	junction_1	7.56240702422185	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTTATGGCTTTATTTT	1279	False	NA	NA	False	ATTAAA	-23	NA	35133445	35149332	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35133497_35135622_35135672_35136293_35136368_35136492_35136572_35137214_35137315_35137395_35137519_35137820_35137882_35140040_35140132_35140207_35140292_35140503_35140740_35140837_35140938_35142403_35142497_35142723_35142827_35146649_35146901_35146993_35147089_35147181_35147286_35147395_35147470_35147610_35147682_35147783_35147879_35147954_35148040_35149090
transcript_40403.known	chr17	+	2246	18	FSM	ENSMUSG00000007034.16	ENSMUST00000169230.2	2246	18	0	0	0	0	multi-exon	FALSE	non_canonical	1	4	junction_1	7.17888098382546	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTCAATACCCAGTAAGAAA	120	False	NA	NA	False	ATTAAA	-21	NA	35136694	35149412	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35136853_35137214_35137315_35137395_35137519_35137820_35137882_35140040_35140132_35140207_35140292_35140503_35140740_35140837_35140938_35142403_35142497_35142723_35142827_35146649_35146901_35146993_35147089_35147181_35147286_35147395_35147470_35147610_35147682_35147783_35147879_35147954_35148040_35149090
transcript_40406.nic	chr17	+	402	2	ISM	ENSMUSG00000007034.16	ENSMUST00000169230.2	2246	18	11185	80	11185	0	3prime_fragment	FALSE	canonical	3	35	junction_1	0	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTTATGGCTTTATTTT	5574	False	NA	NA	False	ATTAAA	-23	NA	35147879	35149332	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_35148040_35149090
transcript_40407.known	chr17	+	2474	6	FSM	ENSMUSG00000007038.6	ENSMUST00000007253.6	2474	6	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_3	26.914680009244	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	7923	False	NA	NA	False	NA	NA	NA	35150228	35154897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35150524_35150891_35151085_35151541_35151805_35152978_35153162_35153258_35153482_35153580
transcript_4041.nnic	chr1	+	1455	9	NNC	ENSMUSG00000070645.6	novel	1592	9	NA	NA	-12785	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	2.43669858620224	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCGGATGGGTTCTTTGGA	9328	False	NA	10	True	AATAAA	-21	NA	133265462	133288063	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_133265614_133281864_133282016_133282539_133282664_133283232_133283352_133284122_133284320_133286141_133286262_133286675_133286821_133287071_133287171_133287714
transcript_40411.known	chr17	+	3619	5	FSM	ENSMUSG00000007038.6	ENSMUST00000173269.2	3619	5	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_3	25.7001945517928	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGATTCGGGCTGCGTTC	7984	False	NA	NA	False	NA	NA	NA	35150289	35154929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35150524_35150891_35151085_35151541_35153162_35153258_35153482_35153580
transcript_40427.known	chr17	-	579	5	FSM	ENSMUSG00000092203.8	ENSMUST00000172501.8	579	5	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_4	37.0497975702972	11050	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTAAATAGACTTTTTCT	6010	False	NA	NA	False	AATAAA	-14	NA	35171444	35169218	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35169452_35169673_35169824_35170860_35170902_35171111_35171150_35171327
transcript_40428.known	chr17	-	434	4	FSM	ENSMUSG00000092203.8	ENSMUST00000173070.8	434	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	32.4995726467629	3346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAATAGACTTTTTCTGT	6007	False	NA	NA	False	AATAAA	-16	NA	35171447	35169216	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35169452_35170860_35170902_35171111_35171150_35171327
transcript_40429.known	chr17	-	747	4	FSM	ENSMUSG00000092203.8	ENSMUST00000173811.8	747	4	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	36.5908306668336	631	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAATAGACTTTTTCTGT	6022	False	NA	NA	False	AATAAA	-16	NA	35171432	35169216	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35169452_35169673_35169824_35170860_35170902_35171111
transcript_4043.known	chr1	+	1592	9	FSM	ENSMUSG00000070645.6	ENSMUST00000094556.3	1592	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	2.17586189819115	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCGGATGGGTTCTTTGGA	6006	False	NA	10	True	AATAAA	-21	NA	133278247	133288063	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_133278536_133281864_133282016_133282539_133282664_133283232_133283352_133284122_133284320_133286141_133286262_133286675_133286821_133287071_133287171_133287714
transcript_40430.known	chr17	-	934	3	FSM	ENSMUSG00000092203.8	ENSMUST00000174039.8	934	3	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	40	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAAATAGACTTTTTCTG	6044	False	NA	NA	False	AATAAA	-15	NA	35171410	35169217	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35169452_35169673_35169824_35170860
transcript_40431.known	chr17	-	520	4	FSM	ENSMUSG00000092203.8	ENSMUST00000174714.8	520	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	75.5439533575579	1096	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAATAGACTTTTTCTGT	6030	False	NA	NA	False	AATAAA	-16	NA	35171424	35169216	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35169452_35169673_35169824_35171111_35171150_35171327
transcript_40432.known	chr17	-	785	2	FSM	ENSMUSG00000092203.8	ENSMUST00000174464.2	785	2	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATAGACTTTTTCTGTGTC	7234	False	NA	NA	False	AATAAA	-19	NA	35170220	35169213	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35169452_35169673
transcript_40433.known	chr17	-	691	2	FSM	ENSMUSG00000092203.8	ENSMUST00000172531.2	691	2	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGCCTTTAAGTTCTGTA	6016	False	NA	NA	False	NA	NA	NA	35171438	35170569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35171150_35171327
transcript_40434.known	chr17	-	2803	1	FSM	ENSMUSG00000090877.4	ENSMUST00000172753.2	2803	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTATATTTTGTCTGTTTG	8771	False	NA	NA	False	AATAAA	-8	NA	35178214	35175411	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35175400_35178200
transcript_40435.known	chr17	-	2200	2	FSM	ENSMUSG00000073415.5	ENSMUST00000151136.2	2200	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGTTTTTCTCTTCAAGA	4732	False	NA	NA	False	AATAAA	-18	NA	35200764	35195874	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35197728_35200417
transcript_40436.known	chr17	+	870	6	FSM	ENSMUSG00000007050.18	ENSMUST00000173004.2	870	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	799.20720717471	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCCTGGTTTGTCGTCTG	273	False	NA	24	True	AATAAA	-18	NA	35201134	35204865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35201344_35201595_35201664_35203955_35203985_35204084_35204116_35204224_35204285_35204392
transcript_40439.known	chr17	+	528	5	FSM	ENSMUSG00000007050.18	ENSMUST00000174434.8	528	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	791.372976225496	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACAGGATGCAGCAAGGAA	323	False	NA	NA	False	NA	NA	NA	35201184	35204473	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35201344_35201595_35201664_35203955_35204116_35204224_35204285_35204392
transcript_40442.known	chr17	+	873	5	FSM	ENSMUSG00000007050.18	ENSMUST00000007266.14	873	5	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_1	596.250995806296	2318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGGTTTGTCGTCTGCT	243	False	NA	26	True	AATAAA	-20	NA	35201104	35204867	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35201344_35201595_35201664_35204084_35204116_35204224_35204285_35204392
transcript_40443.known	chr17	+	653	5	FSM	ENSMUSG00000007050.18	ENSMUST00000172777.8	653	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	713.006442818015	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGGGATGGAAAGATCTG	273	False	NA	-31	True	AATACA	-2	NA	35201134	35204810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35201211_35201595_35201664_35204084_35204116_35204224_35204285_35204392
transcript_40444.known	chr17	+	368	5	FSM	ENSMUSG00000007050.18	ENSMUST00000174326.8	368	5	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	710.43520992417	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTCCTACTGAGGACAAGAA	235	False	NA	NA	False	NA	NA	NA	35201096	35204568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35201130_35201595_35201664_35204084_35204116_35204224_35204285_35204392
transcript_40447.known	chr17	+	521	4	FSM	ENSMUSG00000007050.18	ENSMUST00000174241.8	521	4	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	766.950237412224	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAACTGAATGGATGAGAGA	25	False	NA	NA	False	NA	NA	NA	35200886	35204647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35201062_35204084_35204116_35204224_35204285_35204392
transcript_40449.known	chr17	+	840	5	FSM	ENSMUSG00000007050.18	ENSMUST00000114011.11	840	5	0	0	0	0	multi-exon	FALSE	canonical	3	1192	junction_1	217.150869213089	2036	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGGTTTGTCGTCTGCT	-6	True	NA	26	True	AATAAA	-20	NA	35200855	35204867	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35201062_35201595_35201664_35204084_35204116_35204224_35204285_35204392
transcript_4045.nnic	chr1	+	1486	9	NNC	ENSMUSG00000070645.6	novel	1592	9	NA	NA	478	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	2.17586189819115	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCGGATGGGTTCTTTGGA	7883	False	NA	10	True	AATAAA	-21	NA	133280124	133288063	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_133280307_133281864_133282016_133282539_133282664_133283232_133283352_133284122_133284320_133286141_133286262_133286675_133286821_133287071_133287171_133287714
transcript_40450.known	chr17	+	687	5	FSM	ENSMUSG00000007050.18	ENSMUST00000172890.8	687	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	715.149285114653	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCCTGGTTTGTCGTCTG	273	False	NA	24	True	AATAAA	-18	NA	35201134	35204865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35201211_35201616_35201664_35204084_35204116_35204224_35204285_35204392
transcript_40451.known	chr17	+	4137	30	FSM	ENSMUSG00000007029.17	ENSMUST00000087315.14	4137	30	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_12	417.564149877336	862	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATTCGCTCTTGTCTGTG	9474	False	NA	10	True	AATAAA	-11	NA	35219962	35235298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35220209_35220387_35220807_35223180_35223316_35223412_35223552_35223747_35223870_35223952_35224038_35224225_35224327_35224450_35224579_35229481_35229647_35229813_35229896_35230180_35230301_35230382_35230492_35230575_35230671_35230783_35230875_35231064_35231190_35231272_35231377_35231465_35231625_35231705_35231797_35231905_35232012_35232097_35232169_35232240_35232367_35232618_35232724_35232803_35232873_35233001_35233081_35233209_35233338_35233597_35233754_35233912_35234120_35234340_35234453_35234569_35234896_35235162
transcript_40455.known	chr17	+	819	4	FSM	ENSMUSG00000007029.17	ENSMUST00000174260.8	819	4	0	0	0	0	multi-exon	FALSE	canonical	3	1246	junction_3	61.0300472445063	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGCGCAGCTCAAAAAAGAGG	5	False	NA	NA	False	AAAACA	-3	NA	35220292	35223778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35220807_35223180_35223316_35223412_35223552_35223747
transcript_40457.nic	chr17	-	684	5	NIC	ENSMUSG00000036185.10	novel	665	5	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_4	14.8218588577816	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTGGTTTGGCTCCTGT	NA	False	NA	NA	False	AATAAA	-35	NA	35246913	35244934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_35245124_35245313_35245434_35245669_35245763_35246419_35246561_35246772
transcript_40458.known	chr17	-	665	5	FSM	ENSMUSG00000036185.10	ENSMUST00000174037.8	665	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	14.8218588577816	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTGGTTTGGCTCCTGT	NA	False	NA	NA	False	AATAAA	-35	NA	35246890	35244934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35245124_35245313_35245434_35245669_35245763_35246419_35246565_35246772
transcript_40460.known	chr17	-	618	4	FSM	ENSMUSG00000036185.10	ENSMUST00000173211.8	618	4	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_3	4.54606056566195	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTGGTTTGGCTCCTGT	NA	False	NA	NA	False	AATAAA	-35	NA	35246635	35244934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35245124_35245313_35245434_35245669_35245763_35246419
transcript_40461.nnic	chr17	-	545	4	NIC	ENSMUSG00000036185.10	novel	665	5	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_3	24.4449494897321	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTGGTTTGGCTCCTGT	NA	False	NA	NA	False	AATAAA	-35	NA	35246915	35244934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_35245124_35245313_35245434_35245669_35245763_35246772
transcript_40467.known	chr17	-	935	4	FSM	ENSMUSG00000036185.10	ENSMUST00000040151.9	935	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	16.4181471413663	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGC	NA	False	NA	NA	False	AATAAA	-17	NA	35246992	35244952	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35245434_35245669_35245763_35246419_35246561_35246772
transcript_40468.known	chr17	-	651	4	FSM	ENSMUSG00000036185.10	ENSMUST00000174117.2	651	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	16.4181471413663	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGGGCTCCAGGCTGAGA	NA	False	NA	NA	False	NA	NA	NA	35246992	35245240	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35245434_35245669_35245763_35246419_35246565_35246772
transcript_40469.nnic	chr17	-	749	3	NIC	ENSMUSG00000036185.10	novel	665	5	NA	NA	4	0	intron_retention	FALSE	canonical	2	4	junction_1	21.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTGGTTTGGCTCCTGT	NA	False	NA	NA	False	AATAAA	-35	NA	35246886	35244934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_35245124_35245669_35245763_35246419
transcript_4047.known	chr1	+	2297	8	FSM	ENSMUSG00000070644.14	ENSMUST00000135222.9	2297	8	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_5	9.79379228628721	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTTGGGATCTGATTAG	NA	False	NA	25	True	ATTAAA	-35	NA	133291309	133308074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_133291757_133293313_133293574_133296487_133296611_133300872_133301016_133302264_133302349_133304643_133304790_133306186_133306261_133307054
transcript_40474.nic	chr17	-	800	3	ISM	ENSMUSG00000036185.10	ENSMUST00000040151.9	935	4	347	0	-10	0	3prime_fragment	FALSE	canonical	3	47	junction_2	5.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGC	NA	False	NA	NA	False	AATAAA	-17	NA	35246645	35244952	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_-_35245434_35245669_35245763_35246419
transcript_4051.known	chr1	+	2742	4	FSM	ENSMUSG00000070644.14	ENSMUST00000147909.8	2742	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	9.84321537348893	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	133291313	133302788	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_133291757_133293313_133293574_133296487_133296611_133300872
transcript_40519.known	chr17	+	1342	7	FSM	ENSMUSG00000007039.13	ENSMUST00000007255.13	1342	7	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_1	36.6488593122472	4741	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGGGCTGTGACTGGTTT	NA	False	NA	13	True	AATAAA	-19	NA	35278010	35281067	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35278249_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280451_35280602_35280766
transcript_40520.known	chr17	+	1254	7	FSM	ENSMUSG00000007039.13	ENSMUST00000174493.8	1254	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_6	164.014989152415	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTGTGACTGGTTTCTCG	NA	False	NA	17	True	AATAAA	-23	NA	35278076	35281071	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35278249_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280451_35280576_35280766
transcript_40521.known	chr17	+	598	4	FSM	ENSMUSG00000092586.9	ENSMUST00000173207.8	598	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.09120616516523	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCACCCCCTTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	35284363	35288601	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35284427_35286302_35286421_35287842_35287954_35288295
transcript_40522.known	chr17	+	962	3	FSM	ENSMUSG00000092586.9	ENSMUST00000173478.2	962	3	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGTTGTGTTTATTGTTAGA	NA	False	NA	NA	False	AATAAA	-17	NA	35286300	35289026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35286421_35287842_35287954_35288295
transcript_40530.known	chr17	+	750	4	FSM	ENSMUSG00000013766.12	ENSMUST00000172678.8	750	4	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_1	129.208702837266	457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCAAAGGGACAGAAGTGTC	NA	False	NA	NA	False	NA	NA	NA	35295906	35297526	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35295967_35296110_35296183_35296812_35296939_35297034
transcript_40532.known	chr17	+	464	4	FSM	ENSMUSG00000013766.12	ENSMUST00000172494.8	464	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	226.144987907217	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACGGCTGTCAACCCAGGA	NA	False	NA	NA	False	NA	NA	NA	35295877	35297270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35295936_35296110_35296183_35296812_35296911_35297034
transcript_40533.nic	chr17	+	1133	4	NIC	ENSMUSG00000013766.12	novel	1142	3	NA	NA	-131	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	215.629826838084	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAAGAGAGCTGTCTGTG	NA	False	NA	20	True	NA	NA	NA	35295746	35297780	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_35295936_35296110_35296183_35296812_35296939_35297034
transcript_40540.known	chr17	-	546	3	FSM	ENSMUSG00000073413.10	ENSMUST00000007259.4	546	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	9.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATTGATGAACTATTCT	NA	False	NA	NA	False	NA	NA	NA	35293476	35290418	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35290736_35293150_35293289_35293385
transcript_40541.nnic	chr17	-	808	3	NNC	ENSMUSG00000073413.10	novel	546	3	NA	NA	649	95	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	7	83	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGAAATGTTCGTTTGGGTT	NA	False	NA	NA	False	NA	NA	NA	35296383	35290323	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_35290736_35293150_35293289_35296125
transcript_40542.known	chr17	-	690	3	FSM	ENSMUSG00000073413.10	ENSMUST00000172639.8	690	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	7	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGGTAAGAAGACAAACACT	NA	False	NA	NA	False	NA	NA	NA	35297041	35290452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35290736_35293150_35293289_35296772
transcript_40545.known	chr17	+	1142	3	FSM	ENSMUSG00000013766.12	ENSMUST00000013910.5	1142	3	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_2	34.5	592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAAGAGAGCTGTCTGTG	NA	False	NA	20	True	NA	NA	NA	35295912	35297780	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35296183_35296812_35296939_35297034
transcript_40546.known	chr17	-	667	2	FSM	ENSMUSG00000073413.10	ENSMUST00000173120.2	667	2	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAACTGTCAGGGACTGA	NA	False	NA	NA	False	AATAAA	-21	NA	35297041	35292890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35293289_35296772
transcript_40551.known	chr17	+	1945	20	FSM	ENSMUSG00000007036.16	ENSMUST00000007251.14	1945	20	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_5	22.1293102285439	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGCTGCTTATGAGATGT	NA	False	NA	32	True	AATAAA	-19	NA	35308266	35321963	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35308433_35309344_35309402_35309997_35310065_35310546_35310634_35313226_35313313_35315279_35315354_35315457_35315581_35317669_35317785_35317874_35317977_35319310_35319375_35319614_35319665_35319937_35320062_35320217_35320323_35320517_35320582_35320803_35320861_35320945_35321009_35321121_35321199_35321273_35321373_35321450_35321498_35321645
transcript_40554.known	chr17	+	509	3	FSM	ENSMUSG00000034482.3	ENSMUST00000037849.3	509	3	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_1	2.5	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGGATTTCCATCTGAG	6711	False	NA	NA	False	NA	NA	NA	35327254	35330967	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35327397_35329642_35329808_35330765
transcript_40563.known	chr17	+	2142	3	FSM	ENSMUSG00000043311.8	ENSMUST00000061859.7	2142	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTTCCACTCAGTGTCCT	2180	False	NA	23	True	AATAAA	-40	NA	35345361	35347831	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35345427_35345618_35345762_35345897
transcript_40566.known	chr17	-	961	7	FSM	ENSMUSG00000024387.14	ENSMUST00000025246.13	961	7	0	0	0	0	multi-exon	FALSE	canonical	3	826	junction_1	47.9780042195264	10388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGTCTCCTACTGTGT	NA	False	NA	-9	True	AATAAA	-15	NA	35340262	35335173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35335402_35336671_35336862_35336971_35337048_35337434_35337551_35338729_35338833_35339420_35339504_35340097
transcript_40567.known	chr17	-	917	7	FSM	ENSMUSG00000024387.14	ENSMUST00000173114.8	917	7	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_6	341.027369380621	1124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTCTCCTACTGTGTGT	NA	False	NA	-7	True	AATAAA	-17	NA	35340405	35335171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35335402_35336671_35336862_35336971_35337048_35337434_35337551_35338729_35338833_35339420_35339504_35340286
transcript_40568.known	chr17	+	1518	3	FSM	ENSMUSG00000092417.4	ENSMUST00000165306.3	1518	3	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	21.5	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTGTTTACTTTCTTGAA	4589	False	NA	14	True	AATAAA	-14	NA	35340458	35343790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35340775_35342028_35342636_35343195
transcript_40569.known	chr17	+	676	2	FSM	ENSMUSG00000092417.4	ENSMUST00000173043.4	676	2	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGGAGGGAGCCTTCACT	4588	False	NA	NA	False	NA	NA	NA	35340457	35342635	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35340527_35342028
transcript_40570.known	chr17	-	784	2	FSM	ENSMUSG00000092241.2	ENSMUST00000173576.2	784	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGATATGAATCTGTGTAG	NA	False	NA	NA	False	AATAAA	-17	NA	35345416	35341713	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35342215_35345133
transcript_40571.nnic	chr17	-	829	7	NNC	ENSMUSG00000024391.8	novel	1013	6	NA	NA	-85	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	14.0287403410126	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTGGGTTTTGTCTGCA	NA	False	NA	NA	False	AATAAA	-20	NA	35351111	35347972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_35348112_35349055_35349155_35349383_35349483_35349814_35349895_35350170_35350326_35350585_35350634_35350902
transcript_40572.known	chr17	-	1013	6	FSM	ENSMUSG00000024391.8	ENSMUST00000025249.7	1013	6	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	5.65685424949238	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTGGGTTTTGTCTGCA	NA	False	NA	NA	False	AATAAA	-20	NA	35351026	35347972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35348112_35349055_35349155_35349383_35349483_35349814_35349895_35350170_35350326_35350585
transcript_40574.known	chr17	+	3858	25	FSM	ENSMUSG00000024392.18	ENSMUST00000025250.14	3858	25	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_11	162.018431736091	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCGAGTACCTTTTCTTTA	8488	False	NA	32	True	AATAAA	-33	NA	35354153	35366298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35354448_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361702_35361816_35361898_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
transcript_40582.known	chr17	+	444	4	FSM	ENSMUSG00000024392.18	ENSMUST00000172993.2	444	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	337.576657960825	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTTCGAGTACCTTTTCT	5884	False	NA	29	True	AATAAA	-30	NA	35364863	35366295	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35364898_35365001_35365146_35365242_35365330_35366116
transcript_40583.known	chr17	-	6888	31	FSM	ENSMUSG00000024393.15	ENSMUST00000025253.12	6888	31	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_20	122.598119434553	153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGGAAAGTCATGGGTGG	NA	False	NA	-1	True	AATAAA	-21	NA	35383873	35368051	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35368378_35368485_35368577_35368675_35368771_35368884_35369098_35369203_35369303_35369473_35369685_35369792_35369882_35371593_35371762_35372027_35372100_35372200_35372342_35372482_35372717_35372897_35372984_35373083_35373214_35373441_35373573_35373767_35374037_35374341_35376184_35376323_35376535_35376854_35377156_35377368_35377560_35377911_35378390_35378755_35378967_35379072_35379164_35379427_35379571_35379728_35379809_35380003_35380156_35380309_35380454_35380617_35380691_35380785_35380886_35381177_35381356_35381847_35382023_35383710
transcript_40584.known	chr17	-	462	3	FSM	ENSMUSG00000024397.15	ENSMUST00000173281.8	462	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCAGCTCTGCAGTTACTG	NA	False	NA	NA	False	AATAAA	-20	NA	35390834	35389966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35390170_35390389_35390553_35390738
transcript_40586.known	chr17	-	415	4	FSM	ENSMUSG00000073412.7	ENSMUST00000097336.5	415	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	1.24721912892465	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGCTTCTCTATATGTGT	NA	False	NA	NA	False	AGTAAA	-22	NA	35407415	35404070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35404287_35405560_35405581_35405921_35406018_35407332
transcript_40588.nnic	chr17	-	301	3	NNC	ENSMUSG00000073412.7	novel	415	4	NA	NA	1672	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4.5	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGCTTCTCTATATGTGT	NA	False	NA	NA	False	AGTAAA	-22	NA	35405743	35404070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_35404287_35405560_35405581_35405678
transcript_40591.nnic	chr17	+	1349	3	Fusion	ENSMUSG00000086076.2_ENSMUSG00000024399.6	novel	525	3	NA	NA	3679	0	intron_retention	FALSE	canonical	0	0	junction_1	2.5	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCGGCCCTTGCCAGTGT	2506	False	NA	NA	False	AATAAA	-12	NA	35403189	35415278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr17_+_35403624_35414025_35414342_35414679
transcript_40592.nnic	chr17	+	1143	3	NNC	ENSMUSG00000024399.6	novel	1160	3	NA	NA	-7560	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	0	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCGGCCCTTGCCAGTGT	5171	False	NA	NA	False	AATAAA	-12	NA	35405854	35415278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_35406083_35414025_35414342_35414679
transcript_40594.known	chr17	-	1447	4	FSM	ENSMUSG00000042419.9	ENSMUST00000048994.7	1447	4	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_2	9.89949493661167	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCAGAGTCTCCTCTGTTT	NA	False	NA	-1	True	NA	NA	NA	35454768	35439150	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35439953_35440112_35440335_35453927_35454208_35454625
transcript_40595.nnic	chr17	-	1475	4	NNC	ENSMUSG00000042419.9	novel	1447	4	NA	NA	-738	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_3	32.4995726467629	94	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCAGAGTCTCCTCTGTTT	NA	False	NA	-1	True	NA	NA	NA	35455506	35439150	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_35439953_35440112_35440335_35453927_35454208_35455335
transcript_4060.known	chr1	-	503	5	FSM	ENSMUSG00000090553.9	ENSMUST00000166915.8	503	5	0	0	0	0	multi-exon	FALSE	canonical	3	3763	junction_3	447.106461035848	59601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTTTCATTCTGGTGGC	NA	False	NA	-9	True	AATAAA	-30	NA	133538029	133531608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_133531815_133534238_133534318_133536634_133536698_133537455_133537483_133537901
transcript_40602.known	chr17	+	1739	11	FSM	ENSMUSG00000019432.16	ENSMUST00000068056.12	1739	11	0	0	0	0	multi-exon	FALSE	canonical	3	2129	junction_1	149.184985839729	9931	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTCTGTTCATGGCTTGA	NA	False	NA	37	True	AATGAA	-26	NA	35460721	35472683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
transcript_40603.known	chr17	+	759	6	FSM	ENSMUSG00000019432.16	ENSMUST00000174757.8	759	6	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	884.111395696266	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGCAAAGAGATCCGCCCA	NA	False	NA	NA	False	NA	NA	NA	35460753	35468001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35460829_35462222_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926
transcript_40604.known	chr17	+	1744	7	FSM	ENSMUSG00000073411.13	ENSMUST00000172503.3	1744	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	18.315900802915	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTTGAAAGTGACCTTGA	2085	False	NA	NA	False	NA	NA	NA	35482071	35486329	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35482163_35482354_35482625_35482814_35483091_35484759_35485036_35485162_35485280_35485442_35485491_35485663
transcript_4061.known	chr1	-	653	4	FSM	ENSMUSG00000090553.9	ENSMUST00000172079.2	653	4	0	0	0	0	multi-exon	FALSE	canonical	3	3763	junction_3	471.411356107027	839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGGAAGTTTTTGTTAAAA	NA	False	NA	-34	True	AATAAA	-5	NA	133537785	133531633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_133531815_133534238_133534318_133536634_133536698_133537455
transcript_40616.known	chr17	+	1497	7	FSM	ENSMUSG00000060550.17	ENSMUST00000071951.14	1497	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.74535599249993	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATAAATAAATGGCA	8298	False	NA	NA	False	NA	NA	NA	35658130	35662710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35658261_35658427_35658698_35658884_35659161_35661242_35661528_35661653_35661771_35661942_35661976_35662324
transcript_40618.known	chr17	+	1134	5	FSM	ENSMUSG00000060550.17	ENSMUST00000116598.10	1134	5	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	0.707106781186548	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTCACTGAGCTGTGT	8298	False	NA	NA	False	AATAAA	-29	NA	35658130	35662749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35658261_35658427_35658698_35658884_35659161_35661942_35661976_35662324
transcript_40619.known	chr17	+	4209	3	FSM	ENSMUSG00000060550.17	ENSMUST00000173788.2	4209	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	0.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATCTGTGTCACTGAGCT	8350	False	NA	NA	False	AATAAA	-25	NA	35658182	35662745	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35658261_35658427_35658698_35658884
transcript_4062.known	chr1	-	360	4	FSM	ENSMUSG00000090553.9	ENSMUST00000166291.8	360	4	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	1734.66788367879	997	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTACATTGTTTCATTCTG	NA	False	NA	-14	True	AATAAA	-25	NA	133537970	133531613	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_133531815_133536634_133536698_133537455_133537483_133537901
transcript_40620.known	chr17	+	1419	6	FSM	ENSMUSG00000060550.17	ENSMUST00000078205.14	1419	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.748331477354788	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTCACTGAGCTGTGT	8298	False	NA	NA	False	AATAAA	-29	NA	35658130	35662749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35658261_35658427_35658698_35658884_35659161_35661242_35661528_35661942_35661976_35662324
transcript_40621.known	chr17	+	1473	7	FSM	ENSMUSG00000067235.15	ENSMUST00000068291.7	1473	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	3.16227766016838	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTGTGTCAGTATGCTGT	NA	False	NA	NA	False	AATAAA	-23	NA	35780985	35785460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35781077_35781272_35781543_35781722_35781999_35783979_35784256_35784382_35784487_35784664_35784698_35785037
transcript_40624.nnic	chr17	+	1373	5	NIC	ENSMUSG00000067235.15	novel	1473	7	NA	NA	-211	4	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	3.53553390593274	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCCAGAGTCTGTGTCAG	NA	False	NA	NA	False	AATAAA	-15	NA	35780774	35785452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_35781077_35781722_35781999_35783979_35784256_35784382_35784487_35785037
transcript_40639.known	chr17	+	1362	5	FSM	ENSMUSG00000024406.17	ENSMUST00000025271.17	1362	5	0	0	0	0	multi-exon	FALSE	canonical	3	3795	junction_3	232.519354033164	53383	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGAATTTTGTTTTCCT	3036	False	NA	0	True	AATAAA	-20	NA	35816914	35821669	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184
transcript_4064.known	chr1	-	4396	18	FSM	ENSMUSG00000102976.7	ENSMUST00000191896.6	4396	18	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_16	96.2094744595279	751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCTTATCATTATAACTCA	NA	False	NA	1	True	AATAAA	-21	NA	133589056	133547599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133583082_133583137_133588974
transcript_40655.known	chr17	-	1665	4	FSM	ENSMUSG00000050410.16	ENSMUST00000161012.8	1665	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	21.6846079563875	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCGTTGAATCTAAGTCT	9333	False	NA	-5	True	AATAAA	-20	NA	35827721	35823630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35824082_35825370_35825918_35826774_35827328_35827607
transcript_40656.known	chr17	-	1732	4	FSM	ENSMUSG00000050410.16	ENSMUST00000160885.2	1732	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	32.9983164553722	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTTGCGTTGAATCTAAG	9372	False	NA	-8	True	AATAAA	-17	NA	35827682	35823633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35824082_35825370_35825918_35826774_35827437_35827607
transcript_40657.nnic	chr17	+	2642	18	NNC	ENSMUSG00000040312.15	novel	2656	18	NA	NA	-95	0	at_least_one_novel_splicesite	TRUE	canonical	3	25	junction_1	28.0148255362583	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGTTTGAGAGACTGCGA	4337	False	NA	20	True	AATAAA	-22	NA	35827901	35841902	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_35828009_35829113_35829181_35829275_35829490_35831771_35832076_35835342_35835507_35835595_35835732_35835873_35835985_35836156_35836307_35837276_35837388_35837505_35837613_35838965_35839079_35839238_35839285_35839436_35839586_35839674_35839864_35839941_35840044_35841044_35841197_35841340_35841456_35841597
transcript_40658.known	chr17	+	2656	18	FSM	ENSMUSG00000040312.15	ENSMUST00000164242.9	2656	18	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	24.5503507751598	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCCTGGAGATGTTTGAG	4432	False	NA	11	True	AATAAA	-13	NA	35827996	35841893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35828127_35829113_35829181_35829275_35829490_35831771_35832076_35835342_35835507_35835595_35835732_35835873_35835985_35836156_35836307_35837276_35837388_35837505_35837613_35838965_35839079_35839238_35839285_35839436_35839586_35839674_35839864_35839941_35840044_35841044_35841197_35841340_35841456_35841597
transcript_40668.known	chr17	+	2333	3	FSM	ENSMUSG00000040312.15	ENSMUST00000174827.3	2333	3	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	38	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCACTTGGCTTTGCCAC	4448	False	NA	NA	False	NA	NA	NA	35828012	35831427	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35828127_35829113_35829181_35829275
transcript_40669.nnic	chr17	-	743	3	Antisense	novelGene_ENSMUSG00000040312.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_2	0.5	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAGACAAGTTTTTCTCT	9249	False	NA	NA	False	NA	NA	NA	35832098	35830453	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr17_-_35830739_35831274_35831383_35831748
transcript_40671.known	chr17	+	2748	19	FSM	ENSMUSG00000040312.15	ENSMUST00000045956.14	2748	19	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	38.8088461978693	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACTGCGATTTCCCCTGA	4508	False	NA	30	True	AATAAA	-32	NA	35828072	35841912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35828127_35828687_35828837_35829113_35829181_35829275_35829490_35831771_35832076_35835342_35835507_35835595_35835732_35835873_35835985_35836156_35836307_35837276_35837388_35837505_35837613_35838965_35839079_35839238_35839285_35839436_35839586_35839674_35839864_35839941_35840044_35841044_35841197_35841340_35841456_35841597
transcript_40672.known	chr17	+	3054	18	FSM	ENSMUSG00000040312.15	ENSMUST00000173903.2	3054	18	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_16	39.5050695358348	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGTTTGAGAGACTGCGA	4795	False	NA	20	True	AATAAA	-22	NA	35828359	35841902	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35828837_35829113_35829181_35829275_35829490_35831771_35832076_35835342_35835507_35835595_35835732_35835873_35835985_35836156_35836307_35837276_35837388_35837505_35837613_35838965_35839079_35839238_35839285_35839436_35839586_35839674_35839864_35839941_35840044_35841044_35841197_35841298_35841456_35841597
transcript_40673.nnic	chr17	+	1179	3	NNC	ENSMUSG00000024409.9	novel	843	2	NA	NA	-587	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAGTCTGCTTTTTTTACC	1625	False	NA	4	True	AATAAA	-20	NA	35843510	35845544	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_35843825_35844075_35844192_35844795
transcript_40674.known	chr17	+	843	2	FSM	ENSMUSG00000024409.9	ENSMUST00000025273.9	843	2	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAGTCTGCTTTTTTTACC	2212	False	NA	4	True	AATAAA	-20	NA	35844097	35845544	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35844192_35844795
transcript_40676.known	chr17	+	1290	2	FSM	ENSMUSG00000039269.6	ENSMUST00000044326.5	1290	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCTCCGCGTCAGTTTC	3249	False	NA	NA	False	AATAAA	-23	NA	35878346	35879849	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_35878518_35878730
transcript_40679.known	chr17	-	4425	29	FSM	ENSMUSG00000038838.16	ENSMUST00000043674.15	4425	29	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	44.4260449442414	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGGGTCTCGTGAAGCGT	1761	False	NA	NA	False	AATAAA	-37	NA	35978484	35966525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35967545_35967627_35967751_35967841_35968018_35968098_35968211_35969023_35969231_35969918_35970072_35970153_35970282_35970366_35970446_35970543_35970613_35970691_35970797_35970893_35971020_35971105_35971177_35971295_35971402_35971615_35971692_35971767_35971845_35972466_35972549_35972793_35972898_35972994_35973123_35973895_35973987_35974353_35974443_35974962_35975075_35975387_35975508_35975662_35975745_35976677_35976776_35976864_35976932_35977022_35977145_35977546_35977648_35977735_35977818_35977964
transcript_40685.known	chr17	-	1569	14	FSM	ENSMUSG00000001524.15	ENSMUST00000160752.9	1569	14	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_10	65.5597654071206	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGCCAGGTCCAGCCCCG	NA	False	NA	-101	True	NA	NA	NA	35984595	35978721	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35978895_35979319_35979399_35979501_35979550_35980200_35980332_35980520_35980654_35980839_35980924_35981081_35981151_35981256_35981369_35981548_35981638_35981757_35981855_35982121_35982250_35982884_35982990_35983577_35983721_35984417
transcript_40686.known	chr17	-	1569	14	FSM	ENSMUSG00000001524.15	ENSMUST00000160734.8	1569	14	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_13	50.3611806921766	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAAAATCTACGCGGCT	NA	False	NA	-12	True	AATAAA	-6	NA	35984510	35978632	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35978895_35979319_35979399_35979501_35979550_35980200_35980332_35980520_35980654_35980839_35980924_35981081_35981151_35981256_35981369_35981548_35981638_35981757_35981855_35982117_35982250_35982884_35982990_35983577_35983721_35984425
transcript_40688.known	chr17	-	1679	14	FSM	ENSMUSG00000001524.15	ENSMUST00000001565.15	1679	14	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_8	17.8418429806661	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGCGGCTTCAGACGTCTG	NA	False	NA	-1	True	AATAAA	-17	NA	35984631	35978621	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35978895_35979319_35979399_35979501_35979550_35980200_35980332_35980520_35980654_35980839_35980924_35981081_35981151_35981256_35981369_35981548_35981638_35981757_35981855_35982117_35982250_35982884_35982990_35983577_35983721_35984447
transcript_40689.known	chr17	-	731	5	FSM	ENSMUSG00000001524.15	ENSMUST00000160535.8	731	5	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_1	6.13901457890434	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAATCTACGCGGCTTC	NA	False	NA	-10	True	AATAAA	-8	NA	35980729	35978630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_35978895_35979319_35979399_35979501_35979550_35980200_35980332_35980520
transcript_4069.known	chr1	-	4395	17	FSM	ENSMUSG00000116275.2	ENSMUST00000027736.13	4395	17	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_16	98.6493157604248	751	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCCTTAGTTCTTATCAT	NA	False	NA	-8	True	AATAAA	-12	NA	133589118	133547608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133588974
transcript_40694.known	chr17	-	492	2	FSM	ENSMUSG00000092600.2	ENSMUST00000174630.2	492	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTCTCTTCACCATTGA	9160	False	NA	NA	False	NA	NA	NA	36075083	36054214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_36054515_36074891
transcript_40695.known	chr17	+	1131	2	FSM	ENSMUSG00000003541.7	ENSMUST00000003635.7	1131	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTCGAAGTGTATCATTC	NA	False	NA	16	True	AATAAA	-29	NA	36132575	36133815	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_36132821_36132929
transcript_40697.known	chr17	+	1825	13	FSM	ENSMUSG00000059714.14	ENSMUST00000001569.15	1825	13	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_8	11.7434970184448	1050	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATACTTCTTTCCTCACT	NA	False	NA	25	True	ATTAAA	-23	NA	36134121	36143683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_36134394_36134698_36134756_36135018_36135095_36135170_36135262_36135457_36135602_36135724_36135845_36136322_36136419_36136629_36136783_36140734_36140917_36141010_36141057_36141545_36141684_36141834_36142000_36143398
transcript_40700.nic	chr17	+	1638	13	NIC	ENSMUSG00000059714.14	novel	651	8	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	54.6198986939131	672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATACTTCTTTCCTCACT	NA	False	NA	25	True	ATTAAA	-23	NA	36134402	36143683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_36134488_36134698_36134756_36135018_36135095_36135170_36135262_36135457_36135602_36135724_36135845_36136322_36136419_36136629_36136783_36140734_36140917_36141010_36141057_36141545_36141684_36141834_36142000_36143398
transcript_40706.nic	chr17	+	1607	12	NIC	ENSMUSG00000059714.14	novel	1825	13	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_3	49.9444319318153	656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATACTTCTTTCCTCACT	NA	False	NA	25	True	ATTAAA	-23	NA	36134248	36143683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_36134394_36134698_36134756_36135018_36135095_36135457_36135602_36135724_36135845_36136322_36136419_36136629_36136783_36140734_36140917_36141010_36141057_36141545_36141684_36141834_36142000_36143398
transcript_40717.known	chr17	+	405	3	FSM	ENSMUSG00000059714.14	ENSMUST00000174227.2	405	3	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_2	3	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACCCCCACCTTTCTCCT	NA	False	NA	NA	False	NA	NA	NA	36134317	36135290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_36134394_36134698_36134756_36135018
transcript_40725.known	chr17	-	2649	4	FSM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	0	0	0	0	multi-exon	FALSE	canonical	3	8733	junction_1	667.796376150695	17494	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTGAGGCTGTGTGCTC	NA	False	NA	-7	True	AATAAA	-16	NA	36149198	36144812	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_36146932_36147054_36147166_36147519_36147629_36148888
transcript_40726.nnic	chr17	+	1008	4	NNC	ENSMUSG00000061607.16	novel	7335	16	NA	NA	-62	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	63.7024332345319	78	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTCCTGCAGTGAATTA	9328	False	NA	15	True	NA	NA	NA	36152505	36170562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_36152572_36155323_36155463_36156730_36156784_36169812
transcript_40728.nnic	chr17	+	1306	4	NNC	ENSMUSG00000061607.16	novel	7335	16	NA	NA	-15	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	63.7024332345319	56	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTCCTGCAGTGAATTA	9214	False	NA	15	True	NA	NA	NA	36152391	36170562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_36152572_36155323_36155463_36156730_36156981_36169825
transcript_40731.nnic	chr17	+	1043	4	NNC	ENSMUSG00000061607.16	novel	422	3	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	66.2872536767062	74	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTCCTGCAGTGAATTA	9379	False	NA	15	True	NA	NA	NA	36152556	36170562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_36152658_36155323_36155463_36156730_36156784_36169812
transcript_40733.nnic	chr17	+	1227	4	NNC	ENSMUSG00000061607.16	novel	422	3	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	66.2872536767062	56	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTCCTGCAGTGAATTA	9379	False	NA	15	True	NA	NA	NA	36152556	36170562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_36152658_36155323_36155463_36156730_36156981_36169825
transcript_40745.known	chr17	+	2743	4	FSM	ENSMUSG00000034595.18	ENSMUST00000122899.8	2743	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	29.4089933334837	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGCCTTCCTTTGTTTC	9327	False	NA	15	True	AATAAA	-22	NA	36176947	36186488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_36177121_36178121_36179678_36184617_36184832_36185688
transcript_40746.known	chr17	+	302	3	FSM	ENSMUSG00000059791.15	ENSMUST00000172931.2	302	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	132.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGAGCTGCTGACTGTGCT	4757	False	NA	NA	False	NA	NA	NA	36172377	36175495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_36172410_36175003_36175181_36175402
transcript_40748.known	chr17	+	333	2	FSM	ENSMUSG00000059791.15	ENSMUST00000174873.2	333	2	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTTCTCTTTACCCTCTA	4609	False	NA	NA	False	NA	NA	NA	36172229	36175555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_36172410_36175402
transcript_40749.known	chr17	+	1466	4	FSM	ENSMUSG00000059791.15	ENSMUST00000074259.15	1466	4	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_1	13.2748718344933	1210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACTTGTCTGTCCATGAC	4589	False	NA	24	True	AATAAA	-18	NA	36172209	36176294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_36172410_36174330_36174528_36175003_36175181_36175402
transcript_40750.known	chr17	+	1395	3	FSM	ENSMUSG00000034595.18	ENSMUST00000190496.2	1395	3	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	4	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGCTGCCTTCCTTTGTT	NA	False	NA	13	True	AATAAA	-20	NA	36179294	36186486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_36179678_36184617_36184832_36185688
transcript_40751.known	chr17	+	3351	20	FSM	ENSMUSG00000024422.15	ENSMUST00000025292.15	3351	20	0	0	0	0	multi-exon	TRUE	canonical	3	278	junction_2	372.558080768229	5770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTTATGTCATTGCTT	NA	False	NA	52	True	AATGAA	-42	NA	36190710	36203562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_36191011_36192169_36192415_36192521_36192688_36192913_36192971_36193333_36193589_36193736_36193941_36194024_36194217_36194706_36194818_36194911_36195028_36196386_36196598_36196775_36196875_36196981_36197135_36198290_36198432_36198726_36198890_36198975_36199095_36199246_36199315_36200089_36200253_36200330_36200493_36201806_36201981_36203310
transcript_40756.known	chr17	+	825	5	FSM	ENSMUSG00000024422.15	ENSMUST00000172730.8	825	5	0	0	0	0	multi-exon	FALSE	canonical	3	1011	junction_1	85.419552796769	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGGTCAGTGTTTTTGA	7125	False	NA	NA	False	NA	NA	NA	36198570	36200486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_36198890_36198975_36199095_36199246_36199315_36200089_36200253_36200330
transcript_40757.known	chr17	+	462	4	FSM	ENSMUSG00000024422.15	ENSMUST00000173596.2	462	4	0	0	0	0	multi-exon	FALSE	canonical	3	1016	junction_3	79.7788610263813	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCCATGCGCCGAGCCCG	7472	False	NA	NA	False	NA	NA	NA	36198917	36200384	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_36199095_36199246_36199315_36200089_36200253_36200330
transcript_4076.known	chr1	-	418	3	FSM	ENSMUSG00000102976.7	ENSMUST00000191705.6	418	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	191.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAAAGAATCATGTGTTAA	NA	False	NA	NA	False	NA	NA	NA	133589019	133574954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_133575268_133581710_133581771_133588974
transcript_40761.known	chr17	-	1452	13	FSM	ENSMUSG00000024426.18	ENSMUST00000061052.12	1452	13	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_5	27.2308801424657	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGACTTGTCATTATTCAAA	NA	False	NA	2	True	AATAAA	-38	NA	36220967	36208486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_36208808_36209148_36209192_36209279_36209360_36212259_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
transcript_40762.known	chr17	-	1340	12	FSM	ENSMUSG00000024426.18	ENSMUST00000077494.13	1340	12	0	0	0	0	multi-exon	TRUE	canonical	3	28	junction_5	34.4359508470988	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTACCGACAAAAAGTGACT	NA	False	NA	-12	True	AATAAA	-24	NA	36220938	36208500	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_36208808_36209148_36209192_36209279_36209360_36212259_36212504_36212874_36212947_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
transcript_40765.known	chr17	-	1388	12	FSM	ENSMUSG00000024426.18	ENSMUST00000149277.8	1388	12	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	38.3140567174602	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGCTACCGACAAAAAGTG	NA	False	NA	-15	True	AATAAA	-21	NA	36220949	36208503	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_36208808_36209148_36209243_36212259_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
transcript_40772.known	chr17	-	2034	11	FSM	ENSMUSG00000024426.18	ENSMUST00000141662.8	2034	11	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	41.2200194080498	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTTCGTTTGTGCTTCA	NA	False	NA	NA	False	AAAACA	-11	NA	36220937	36210708	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_36211765_36212259_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
transcript_40774.known	chr17	-	1930	10	FSM	ENSMUSG00000024426.18	ENSMUST00000056034.13	1930	10	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	48.3477628524786	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTGACATTTTCAGCGAA	NA	False	NA	NA	False	AATAAA	-24	NA	36220937	36210743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_36211765_36212259_36212504_36212874_36212947_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
transcript_4078.known	chr1	-	10156	17	FSM	ENSMUSG00000094410.9	ENSMUST00000179598.4	10156	17	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_16	80.113981301643	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATTTGAACCATTTGCCA	NA	False	NA	-77	True	NA	NA	NA	133589056	133547677	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133583082
transcript_40790.known	chr17	-	1193	6	FSM	ENSMUSG00000050705.16	ENSMUST00000148482.8	1193	6	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_5	123.227269709265	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGGTTTTCACGTCACTT	NA	False	NA	-3	True	AATAAA	-19	NA	36208012	36203568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_36203859_36203931_36204002_36205810_36206012_36206175_36206265_36206562_36206965_36207871
transcript_40791.known	chr17	-	1293	6	FSM	ENSMUSG00000050705.16	ENSMUST00000148721.8	1293	6	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_5	90.4765162901402	604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGGTTTTCACGTCACTT	NA	False	NA	-3	True	AATAAA	-19	NA	36208323	36203568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_36203859_36203931_36204002_36205810_36206012_36206175_36206265_36206562_36206965_36208082
transcript_40796.known	chr17	-	803	4	FSM	ENSMUSG00000024436.17	ENSMUST00000113782.10	803	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	650.773044582791	893	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGACTCCCTTTGGGCTGT	4296	False	NA	-6	True	AATAAA	-21	NA	36227281	36221270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_36221849_36222310_36222371_36223229_36223297_36227183
transcript_40798.known	chr17	-	2081	5	FSM	ENSMUSG00000050705.16	ENSMUST00000146451.8	2081	5	0	0	0	0	multi-exon	FALSE	canonical	3	307	junction_3	46.1756158594555	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGACATAAGGCAGGTTTT	NA	False	NA	-13	True	AATAAA	-9	NA	36208003	36203578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_36203859_36203931_36204002_36205810_36206012_36206175_36206265_36206562
transcript_40799.known	chr17	-	1079	7	FSM	ENSMUSG00000024436.17	ENSMUST00000025305.16	1079	7	0	0	0	0	multi-exon	FALSE	canonical	3	1264	junction_4	57.4071714451542	10228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGACTCCCTTTGGGCTGT	4296	False	NA	-6	True	AATAAA	-21	NA	36227281	36221270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_36221849_36222310_36222371_36223229_36223297_36225225_36225295_36225383_36225482_36225587_36225697_36227183
transcript_40800.known	chr17	-	848	6	FSM	ENSMUSG00000024436.17	ENSMUST00000174807.8	848	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	524.403279928721	701	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCGTTCTTGACTCCCTTT	4355	False	NA	-13	True	AATAAA	-14	NA	36227222	36221277	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_36221744_36223229_36223297_36225225_36225295_36225383_36225482_36225587_36225697_36227183
transcript_40801.known	chr17	-	838	7	FSM	ENSMUSG00000024426.18	ENSMUST00000127959.8	838	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	49.7426711519731	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCTGAGTCCCTCTAGTT	NA	False	NA	NA	False	NA	NA	NA	36220937	36218856	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_36219148_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
transcript_40803.nic	chr17	+	1590	10	NIC	ENSMUSG00000039220.17	novel	4222	19	NA	NA	-68	-1328	combination_of_known_junctions	FALSE	canonical	3	113	junction_1	15.024260216787	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCACCTGCAGAGAAGAAATA	NA	False	NA	NA	False	NA	NA	NA	36227605	36237893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_36227898_36228089_36228609_36234199_36234318_36234928_36235016_36235136_36235273_36235749_36235802_36237093_36237172_36237291_36237466_36237663_36237770_36237865
transcript_40804.known	chr17	+	1385	2	FSM	ENSMUSG00000039220.17	ENSMUST00000133641.2	1385	2	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTTAGGGCAAAAATCAT	NA	False	NA	NA	False	AATAAA	-16	NA	36227673	36229250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_36227898_36228089
transcript_40806.known	chr17	+	4255	20	FSM	ENSMUSG00000039220.17	ENSMUST00000087211.9	4255	20	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	32.7700795901305	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTGGTATGTTTCACTTC	NA	False	NA	28	True	AATAAA	-28	NA	36227457	36243175	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_36227491_36228089_36228609_36234199_36234318_36234928_36235016_36235136_36235273_36235749_36235802_36237093_36237172_36237291_36237466_36237663_36237770_36237865_36237979_36238801_36238903_36239073_36239222_36239294_36239454_36239543_36239791_36240112_36240177_36240283_36240479_36240664_36240741_36240942_36241057_36241183_36241784_36242040
transcript_40811.known	chr17	-	3161	23	FSM	ENSMUSG00000038762.16	ENSMUST00000043757.15	3161	23	0	0	0	0	multi-exon	FALSE	canonical	3	801	junction_12	70.1887066803097	1838	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGTGCCTGTGGGGTGCT	NA	False	NA	-12	True	AATAAA	-18	NA	36280653	36267710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270120_36270196_36270327_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36271706_36271847_36271934_36272122_36272592_36272716_36272877_36272977_36274017_36274129_36274212_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
transcript_40814.known	chr17	+	2848	12	FSM	ENSMUSG00000024429.10	ENSMUST00000087200.4	2848	12	0	0	0	0	multi-exon	FALSE	canonical	3	575	junction_1	37.9601792225955	841	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCAGAGCGGCTCTTTAA	NA	False	NA	NA	False	NA	NA	NA	36290742	36300354	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_36291140_36291508_36291675_36291953_36292091_36292198_36292351_36292449_36292522_36293416_36293625_36293838_36293935_36294286_36294482_36298356_36298536_36298616_36298780_36299004_36299146_36299412
transcript_4082.known	chr1	+	432	1	FSM	ENSMUSG00000073559.3	ENSMUST00000097570.3	432	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	93	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTGACAATGGAAACATA	NA	False	NA	NA	False	AAGAAA	-19	NA	134037105	134037537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_134037100_134037500
transcript_40828.known	chr17	-	1878	4	FSM	ENSMUSG00000038500.16	ENSMUST00000172429.8	1878	4	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_2	20.5101600838869	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTCTCTCATTTCTCTG	NA	False	NA	-1	True	AATAAA	-16	NA	36289863	36283432	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_36284696_36285414_36285706_36289272_36289336_36289602
transcript_40829.known	chr17	-	2727	4	FSM	ENSMUSG00000038500.16	ENSMUST00000055454.14	2727	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	38.4216374224502	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTCTCTCATTTCTCTG	NA	False	NA	-1	True	AATAAA	-16	NA	36291128	36283432	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_36284696_36285414_36285706_36289272_36289336_36290018
transcript_4083.known	chr1	+	1815	12	FSM	ENSMUSG00000026450.15	ENSMUST00000159963.8	1815	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.91760118834204	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTGTGACTTAAAGAAGC	1436	False	NA	NA	False	AATAAA	-18	NA	134038979	134079278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_134039101_134066378_134066511_134067997_134068028_134070977_134071180_134071748_134071806_134072989_134073156_134073328_134073454_134074299_134074424_134076073_134076260_134077113_134077222_134078216_134078344_134078841
transcript_40831.known	chr17	-	581	4	FSM	ENSMUSG00000038500.16	ENSMUST00000174849.8	581	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_3	46.54985380094	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTCTAAATGGGACACTAC	NA	False	NA	NA	False	AATAAA	-17	NA	36290700	36289055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_36289336_36289602_36289674_36290018_36290148_36290599
transcript_40835.known	chr17	+	487	2	FSM	ENSMUSG00000092604.2	ENSMUST00000172480.2	487	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGCAACAGCAGGAAAAACA	NA	False	NA	NA	False	NA	NA	NA	36302758	36304630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_36303117_36304501
transcript_40837.known	chr17	-	1694	10	FSM	ENSMUSG00000056116.19	ENSMUST00000077960.7	1694	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.785674201318386	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTGTCTTAAATCTATTT	NA	False	NA	NA	False	ATTAAA	-21	NA	36353639	36349300	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_36349669_36349876_36349947_36350068_36350116_36350233_36350267_36351116_36351222_36351369_36351646_36352340_36352578_36352759_36353021_36353233_36353353_36353461
transcript_40839.known	chr17	+	1111	2	FSM	ENSMUSG00000092368.2	ENSMUST00000173900.2	1111	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCCTATCTCTATTAGTC	NA	False	NA	NA	False	AATAAA	-45	NA	36305344	36349327	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_36305453_36348324
transcript_40840.known	chr17	-	1761	9	FSM	ENSMUSG00000056116.19	ENSMUST00000080015.12	1761	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.82915619758885	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTGTCTTAAATCTATTT	NA	False	NA	NA	False	ATTAAA	-21	NA	36353597	36349300	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_36349669_36349876_36349947_36350068_36350116_36350233_36350267_36351116_36351222_36351369_36351646_36352340_36352578_36352759_36353021_36353233
transcript_40845.known	chr17	-	829	5	FSM	ENSMUSG00000073406.11	ENSMUST00000195833.6	829	5	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_4	176.893329438959	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGGTTGATTAGTGGAG	NA	False	NA	-79	True	NA	NA	NA	36395115	36391080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394587_36394825_36395051
transcript_40846.known	chr17	-	862	5	FSM	ENSMUSG00000073406.11	ENSMUST00000194244.6	862	5	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_3	129.95191418367	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGGTTGATTAGTGGAG	NA	False	NA	-79	True	NA	NA	NA	36395115	36391080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394587_36394858_36395051
transcript_40847.known	chr17	-	1105	6	FSM	ENSMUSG00000073406.11	ENSMUST00000195838.6	1105	6	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_5	180.752427369593	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGGTTGATTAGTGGAG	NA	False	NA	-79	True	NA	NA	NA	36395115	36391080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394124_36394401_36394587_36394825_36395051
transcript_4085.nic	chr1	+	725	2	ISM	ENSMUSG00000026450.15	ENSMUST00000086475.3	1688	11	11672	-1	11672	0	3prime_fragment	FALSE	canonical	3	7	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTGTGACTTAAAGAAGC	208	False	NA	NA	False	AATAAA	-18	NA	134078055	134079278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_134078344_134078841
transcript_40859.known	chr17	-	729	5	FSM	ENSMUSG00000024446.14	ENSMUST00000025319.7	729	5	0	0	0	0	multi-exon	FALSE	canonical	3	621	junction_3	61.4262769505038	4683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGTGGTATCTCAACT	NA	False	NA	-16	True	AATAAA	-20	NA	36568961	36566558	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_36566691_36566835_36566962_36568333_36568417_36568497_36568599_36568674
transcript_40866.known	chr17	-	437	4	FSM	ENSMUSG00000024446.14	ENSMUST00000077535.5	437	4	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	333.755399456948	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATCATCTTCCTCTGTA	NA	False	NA	6	True	AATAAA	-42	NA	36568748	36566536	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_36566691_36566835_36566962_36568333_36568417_36568674
transcript_4087.known	chr1	+	1839	10	FSM	ENSMUSG00000064246.11	ENSMUST00000153856.8	1839	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	1.61780219761789	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTGGGATCCTAGGGTT	802	False	NA	NA	False	NA	NA	NA	134110141	134117919	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_134110291_134110517_134110548_134111234_134111440_134111861_134111919_134112886_134113038_134114242_134114365_134115607_134115732_134116232_134116416_134116934_134117052_134117218
transcript_40875.known	chr17	-	579	4	FSM	ENSMUSG00000024446.14	ENSMUST00000173486.8	579	4	0	0	0	0	multi-exon	FALSE	canonical	3	621	junction_3	70.7153920067383	547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGTGGTATCTCAACT	NA	False	NA	-16	True	AATAAA	-20	NA	36568735	36566558	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_36566691_36566835_36566962_36568333_36568417_36568497
transcript_40876.known	chr17	-	464	3	FSM	ENSMUSG00000024446.14	ENSMUST00000174824.2	464	3	0	0	0	0	multi-exon	FALSE	canonical	3	710	junction_2	31	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAGCAGTGGTAAGGAAAG	NA	False	NA	NA	False	NA	NA	NA	36568747	36566835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_36566962_36568333_36568599_36568674
transcript_40877.known	chr17	-	3204	7	FSM	ENSMUSG00000045409.17	ENSMUST00000113706.10	3204	7	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	8.81286937760152	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCTTGAGTTGCGTGGTA	NA	False	NA	-8	True	NA	NA	NA	36582459	36569764	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_36571814_36572382_36572499_36573001_36573025_36574620_36574852_36578016_36578113_36579500_36579959_36582228
transcript_40881.known	chr17	-	1465	5	FSM	ENSMUSG00000045409.17	ENSMUST00000113704.10	1465	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	19.421315609402	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTCATTGTGTTTGTCAT	NA	False	NA	0	True	ATTAAA	-20	NA	36582275	36573496	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_36574130_36574620_36574852_36578016_36578113_36579500_36579959_36582228
transcript_40883.known	chr17	+	3187	10	FSM	ENSMUSG00000024457.17	ENSMUST00000130367.8	3187	10	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_1	52.5084355362939	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATCTGGTGCTGTCTCTT	NA	False	NA	31	True	AATAAA	-38	NA	37148034	37170290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_37148157_37148388_37148465_37161547_37162021_37162118_37162215_37163354_37163586_37165175_37165194_37167093_37167117_37167547_37167664_37167880_37167914_37168291
transcript_40885.known	chr17	+	3198	10	FSM	ENSMUSG00000024457.17	ENSMUST00000053434.15	3198	10	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_5	42.9366458349457	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCAGAAATTTCAAGACAGT	NA	False	NA	13	True	AATAAA	-20	NA	37148037	37170272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_37148157_37148356_37148465_37161547_37162021_37162118_37162215_37163354_37163586_37165175_37165194_37167093_37167117_37167547_37167664_37167880_37167914_37168291
transcript_40887.known	chr17	+	3203	10	FSM	ENSMUSG00000024457.17	ENSMUST00000179968.8	3203	10	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_5	101.9601713573	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCAGAAATTTCAAGACAGT	NA	False	NA	13	True	AATAAA	-20	NA	37148032	37170272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_37148157_37148356_37148465_37161547_37162021_37162118_37162215_37163354_37163586_37166962_37166981_37167093_37167117_37167547_37167664_37167880_37167914_37168291
transcript_4089.known	chr1	+	735	2	FSM	ENSMUSG00000064246.11	ENSMUST00000134812.2	735	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAACGGTGTGCTATAATTG	5623	False	NA	NA	False	AATAAA	-11	NA	134116863	134117765	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_134117052_134117218
transcript_40891.nic	chr17	+	630	2	ISM	ENSMUSG00000024457.17	ENSMUST00000134325.8	4338	5	-133	18162	-126	14	5prime_fragment	FALSE	canonical	3	108	junction_1	0	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAGAAAAGAAATGTATG	NA	False	NA	NA	False	NA	NA	NA	37147899	37148761	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_37148157_37148388
transcript_40892.known	chr17	+	522	2	FSM	ENSMUSG00000024457.17	ENSMUST00000124307.2	522	2	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	37148025	37148747	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_37148157_37148356
transcript_40893.known	chr17	-	1843	7	FSM	ENSMUSG00000050747.15	ENSMUST00000025329.13	1843	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCCTTTGTGTTTTGTGTC	7466	False	NA	NA	False	AATAAA	-14	NA	37178079	37171582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_37172475_37173218_37173252_37173674_37173791_37175140_37175164_37175852_37176084_37177196_37177293_37177627
transcript_40894.known	chr17	+	2245	7	FSM	ENSMUSG00000073400.7	ENSMUST00000060524.11	2245	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCTTCTTTGTTCTACCA	4751	False	NA	NA	False	AATAAA	-20	NA	37180465	37188725	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_37181200_37182564_37182661_37183230_37183462_37184164_37184188_37185057_37185174_37186321_37186355_37187713
transcript_40897.known	chr17	+	656	3	FSM	ENSMUSG00000092239.2	ENSMUST00000174380.2	656	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACGCCCTCAACTTTGAAA	NA	False	NA	NA	False	NA	NA	NA	37234683	37244324	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_37234741_37236244_37236354_37243834
transcript_40898.known	chr17	+	1579	4	FSM	ENSMUSG00000036492.13	ENSMUST00000040498.12	1579	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	1.4142135623731	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATGATGCACAGCAGGAAG	6857	False	NA	NA	False	NA	NA	NA	37253809	37258878	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_37254343_37256065_37256089_37256295_37256388_37257947
transcript_40899.known	chr17	-	520	4	FSM	ENSMUSG00000036398.14	ENSMUST00000174711.8	520	4	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_3	334.250737554243	567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCATTGCCTCCGTTCTCCT	NA	False	NA	-15	True	AATATA	-23	NA	37262633	37260181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_37260447_37260768_37260878_37262314_37262401_37262573
transcript_4090.known	chr1	+	1828	11	FSM	ENSMUSG00000042451.13	ENSMUST00000038445.13	1828	11	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	2.5219040425837	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCATGGGGTTTCTGTGG	9945	False	NA	NA	False	AATAAA	-14	NA	134121185	134128969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_134121465_134121551_134121687_134122314_134122483_134124707_134124797_134125088_134125285_134125467_134125608_134126138_134126299_134127451_134127589_134127687_134127875_134128132_134128186_134128685
transcript_40900.known	chr17	-	1599	3	FSM	ENSMUSG00000036398.14	ENSMUST00000040402.14	1599	3	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_2	5	2263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTGTGTTAAATACAGGC	NA	False	NA	NA	False	AATAAA	-15	NA	37262605	37259247	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_37260447_37260768_37260878_37262314
transcript_40902.known	chr17	-	584	5	FSM	ENSMUSG00000036315.14	ENSMUST00000174466.2	584	5	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_4	268.393833759272	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTACCATGCTTTGTTCTC	NA	False	NA	-98	True	NA	NA	NA	37269451	37265334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_37265445_37268457_37268568_37268723_37268825_37269040_37269122_37269269
transcript_40905.known	chr17	-	710	5	FSM	ENSMUSG00000036315.14	ENSMUST00000172518.8	710	5	0	0	0	0	multi-exon	FALSE	canonical	3	583	junction_4	61.4532342517463	7749	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTGATGTTATGTGTG	NA	False	NA	-13	True	ACTAAA	-15	NA	37269425	37265249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_37265445_37268457_37268568_37268723_37268825_37269040_37269189_37269269
transcript_40906.known	chr17	-	742	4	FSM	ENSMUSG00000036315.14	ENSMUST00000113669.9	742	4	0	0	0	0	multi-exon	FALSE	canonical	3	586	junction_1	61.9157133170212	1831	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGATGTTATGTGTGTT	NA	False	NA	-11	True	ACTAAA	-17	NA	37269374	37265247	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_37265445_37268457_37268568_37268723_37268825_37269040
transcript_40909.known	chr17	+	976	3	FSM	ENSMUSG00000036214.15	ENSMUST00000040177.7	976	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	121.5	738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTTTGCTAATGGTACC	NA	False	NA	17	True	AATAAA	-17	NA	37269483	37276514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_37269595_37275248_37275325_37275725
transcript_40910.known	chr17	+	1020	3	FSM	ENSMUSG00000036214.15	ENSMUST00000173814.2	1020	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	112	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTTTGCTAATGGTACC	NA	False	NA	17	True	AATAAA	-17	NA	37269532	37276514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_37269688_37275248_37275325_37275725
transcript_40912.known	chr17	+	652	3	FSM	ENSMUSG00000036214.15	ENSMUST00000172672.8	652	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	106.5	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGCAAAAGCAGAGTCGTA	NA	False	NA	NA	False	NA	NA	NA	37269510	37275833	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_37269979_37275248_37275325_37275725
transcript_40916.nnic	chr17	-	2570	9	Fusion	ENSMUSG00000083534.2_ENSMUSG00000024459.19	novel	1034	5	NA	NA	277	1843	multi-exon	FALSE	canonical	3	31	junction_1	80.2090043261977	24	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTTGGGTATTGATTGT	NA	False	NA	-2	True	NA	NA	NA	37299660	37278243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr17_-_37279193_37279355_37279529_37280098_37280210_37280331_37280614_37281212_37281462_37281732_37281891_37298307_37298416_37298546_37298823_37299396
transcript_40928.nnic	chr17	-	2040	7	Fusion	ENSMUSG00000083534.2_ENSMUSG00000064308.11	novel	1034	5	NA	NA	-20	1843	multi-exon	FALSE	canonical	3	16	junction_6	60.2430263368485	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTTGGGTATTGATTGT	NA	False	NA	-2	True	NA	NA	NA	37292149	37278243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr17_-_37279193_37279355_37279529_37280098_37280210_37280331_37280614_37281212_37281462_37281732_37281891_37292031
transcript_40931.nnic	chr17	-	1625	7	Fusion	ENSMUSG00000083534.2_ENSMUSG00000064308.11	novel	1034	5	NA	NA	-361	1087	multi-exon	FALSE	canonical	3	16	junction_6	60.2430263368485	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTTGGATTCTATTATTT	NA	False	NA	NA	False	NA	NA	NA	37292490	37278999	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr17_-_37279193_37279355_37279529_37280098_37280210_37280331_37280614_37281212_37281462_37281732_37281891_37292031
transcript_40944.nnic	chr17	-	1145	4	NNC	ENSMUSG00000083534.2	novel	1034	5	NA	NA	691	1843	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	67.6773390598524	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTTGGGTATTGATTGT	NA	False	NA	-2	True	NA	NA	NA	37281597	37278243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_37278611_37280098_37280210_37280331_37280614_37281212
transcript_40946.nnic	chr17	-	971	4	NNC	ENSMUSG00000083534.2	novel	1034	5	NA	NA	691	1087	at_least_one_novel_splicesite	FALSE	canonical	3	60	junction_1	45.0653845971483	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTTGGATTCTATTATTT	NA	False	NA	NA	False	NA	NA	NA	37281597	37278999	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_37279193_37280098_37280210_37280331_37280614_37281212
transcript_40948.nnic	chr17	-	1695	6	Fusion	ENSMUSG00000064308.11_ENSMUSG00000024459.19	novel	865	4	NA	NA	-3	0	intron_retention	FALSE	canonical	2	6	junction_1	114.526154218152	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAAAATTTTGTGTGTTT	NA	False	NA	-20	True	ATTAAA	-29	NA	37299940	37288592	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr17_-_37288999_37289360_37289439_37289542_37289826_37298307_37298416_37298546_37298823_37299396
transcript_4095.known	chr1	-	1689	9	FSM	ENSMUSG00000042305.13	ENSMUST00000191237.7	1689	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	283.900923519104	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTTCATGGAAGAACGTT	NA	False	NA	67	True	NA	NA	NA	134289679	134275419	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_134275933_134277820_134277977_134280092_134280174_134280712_134280876_134282398_134282580_134283297_134283455_134288494_134288663_134289271_134289362_134289499
transcript_40950.known	chr17	-	724	4	FSM	ENSMUSG00000064308.11	ENSMUST00000173707.2	724	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	6.84754619472471	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCGGGAGTCCTGTATCT	NA	False	NA	NA	False	NA	NA	NA	37292109	37288729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_37288999_37289344_37289439_37289542_37289826_37292031
transcript_40953.nic	chr17	-	628	3	ISM	ENSMUSG00000064308.11	ENSMUST00000173707.2	724	4	-44	486	-24	-486	5prime_fragment	FALSE	canonical	3	15	junction_1	0.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACTTAGCGGCCTTTTTT	NA	False	NA	NA	False	TATAAA	-23	NA	37292153	37289215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_-_37289439_37289542_37289826_37292031
transcript_40957.known	chr17	-	2459	4	FSM	ENSMUSG00000024459.19	ENSMUST00000145260.2	2459	4	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_1	46.3680924774785	265	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAACAGAGTTTTTAATACG	NA	False	NA	NA	False	CATAAA	-14	NA	37300429	37294952	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_37295995_37298307_37298416_37298546_37298823_37299396
transcript_40970.known	chr17	+	1991	6	FSM	ENSMUSG00000036036.16	ENSMUST00000089968.13	1991	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1202.47155475712	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	36	True	AATAAA	-41	NA	37312054	37321524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_37312233_37313343_37313670_37314177_37314208_37315688_37315796_37316950_37317087_37320310
transcript_40971.known	chr17	+	1749	5	FSM	ENSMUSG00000036036.16	ENSMUST00000069250.14	1749	5	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_1	1286.78268852981	1716	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	36	True	AATAAA	-41	NA	37313416	37321524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_37313670_37314177_37314208_37315688_37315796_37316941_37317087_37320310
transcript_40972.known	chr17	+	608	2	FSM	ENSMUSG00000036036.16	ENSMUST00000174470.2	608	2	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAATAATGAGAGGTGAGAC	NA	False	NA	NA	False	NA	NA	NA	37313468	37314584	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_37313670_37314177
transcript_40973.known	chr17	+	375	4	FSM	ENSMUSG00000036036.16	ENSMUST00000174747.8	375	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	1184.57193393507	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGACGTGGCAGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	37313445	37316973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_37313652_37314177_37314208_37315688_37315796_37316941
transcript_40974.known	chr17	+	1595	4	FSM	ENSMUSG00000024462.18	ENSMUST00000174456.8	1595	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	13.0213499897497	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGTTTTGTAATTTGTCT	NA	False	NA	16	True	NA	NA	NA	37356919	37360359	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_37357182_37357586_37357669_37358345_37358550_37359312
transcript_40977.known	chr17	+	1460	3	FSM	ENSMUSG00000024462.18	ENSMUST00000172789.2	1460	3	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	4.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGTTTTGTAATTTGTCT	NA	False	NA	16	True	NA	NA	NA	37357459	37360359	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_37357669_37358345_37358550_37359312
transcript_40979.known	chr17	+	686	2	FSM	ENSMUSG00000092591.2	ENSMUST00000172477.2	686	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGATTTAAGCCAACCTTA	NA	False	NA	NA	False	AATAAA	-18	NA	37557851	37559860	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_37557894_37559216
transcript_40980.known	chr17	+	1438	8	FSM	ENSMUSG00000016206.7	ENSMUST00000038580.7	1438	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	3.09047252182628	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACCCCATGTGTTCAAT	NA	False	NA	NA	False	AATAAA	-13	NA	37581110	37585375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_37581226_37581412_37581683_37581888_37582165_37583159_37583436_37583538_37583644_37584609_37584643_37584756_37584804_37585059
transcript_40985.known	chr17	-	373	1	FSM	ENSMUSG00000067189.6	ENSMUST00000172475.2	373	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAAAGGGCTCACCTCCCT	NA	False	NA	NA	False	AAAAAG	-9	NA	38024815	38024442	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_38024400_38024800
transcript_40987.known	chr17	+	433	3	FSM	ENSMUSG00000095625.3	ENSMUST00000232955.2	433	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTTATTTTGCTAATGTA	NA	False	NA	NA	False	NA	NA	NA	39347585	39351118	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_39347694_39349167_39349245_39350870
transcript_40988.known	chr17	+	1849	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGGAGACTGTGGAGGAGC	NA	False	NA	-20	True	NA	NA	NA	40157243	40159092	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_40157200_40159100
transcript_40989.known	chr17	-	714	4	FSM	ENSMUSG00000118642.2	ENSMUST00000205406.2	714	4	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	0	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGGGCCTCACTAAACCAT	NA	False	NA	NA	False	NA	NA	NA	40159718	40158993	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_40159024_40159025_40159488_40159492_40159526_40159529
transcript_40996.known	chr17	+	3674	13	FSM	ENSMUSG00000023921.10	ENSMUST00000169611.4	3674	13	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_5	30.8112533554436	337	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTTCCTGTTGTGTGTTC	NA	False	NA	NA	False	TATAAA	-23	NA	41245575	41272879	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_41245671_41247934_41248354_41249405_41249774_41252206_41252365_41254697_41254870_41257912_41258162_41262645_41262758_41263669_41263786_41265992_41266109_41267097_41267230_41269220_41269369_41269592_41269761_41271458
transcript_41.known	ERCC-00081	+	517	1	FSM	ERCC-00081A	DQ854991	517	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	517	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00081_+_0_500
transcript_41001.known	chr17	-	1442	9	FSM	ENSMUSG00000023919.10	ENSMUST00000087114.5	1942	9	496	4	496	-4	multi-exon	FALSE	canonical	3	128	junction_2	14.1283181943216	583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTCTGATGTGTGAGTAG	NA	False	NA	-5	True	AATAAA	-23	NA	41245442	41233945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_41234508_41235179_41235258_41235392_41235513_41238029_41238160_41240904_41240971_41242540_41242668_41243686_41243742_41243971_41244107_41245273
transcript_41007.known	chr17	-	1942	9	FSM	ENSMUSG00000023919.10	ENSMUST00000087114.5	1942	9	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_2	14.1283181943216	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGATGTGTGAGTAGAACT	NA	False	NA	-1	True	AATAAA	-27	NA	41245938	41233941	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_41234508_41235179_41235258_41235392_41235513_41238029_41238160_41240904_41240971_41242540_41242668_41243686_41243742_41243971_41244107_41245273
transcript_41009.known	chr17	-	5364	18	FSM	ENSMUSG00000061665.8	ENSMUST00000024709.9	5364	18	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_3	39.8587471351445	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGTTGTTTTTTCCTG	NA	False	NA	-3	True	AATAAA	-17	NA	43187280	43103841	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_43107261_43109485_43109550_43116050_43116227_43118804_43118907_43119621_43119735_43126835_43126979_43127317_43127484_43131485_43131549_43133239_43133277_43135364_43135470_43136727_43136823_43137171_43137251_43140808_43140997_43145055_43145177_43149592_43149694_43156216_43156371_43163258_43163420_43187203
transcript_41015.nnic	chr17	+	1872	3	NNC	ENSMUSG00000023915.6	novel	3627	6	NA	NA	60718	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	116.5	50	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGGTTTTGGTATAT	NA	False	NA	21	True	AATAAA	-17	NA	43388176	43400080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_43388373_43396226_43396456_43398633
transcript_41023.nnic	chr17	+	1163	2	NNC	ENSMUSG00000023915.6	novel	3627	6	NA	NA	19741	-217	at_least_one_novel_splicesite	FALSE	canonical	3	79	junction_1	0	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACAGTGTGTGACCTTATG	NA	False	NA	NA	False	AATAAA	-17	NA	43347199	43349402	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_43347446_43348485
transcript_41024.nnic	chr17	+	1394	2	NNC	ENSMUSG00000023915.6	novel	3627	6	NA	NA	19741	14	at_least_one_novel_splicesite	FALSE	canonical	3	79	junction_1	0	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTAAATCTGAGTAAAGGT	NA	False	NA	NA	False	AAAAAG	-5	NA	43347199	43349633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_43347446_43348485
transcript_41025.known	chr17	+	1659	2	FSM	ENSMUSG00000023915.6	ENSMUST00000233482.2	1659	2	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAAAAAGAAAAGTTTAA	NA	False	NA	NA	False	NA	NA	NA	43327458	43349619	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_43327984_43348485
transcript_41030.known	chr17	-	1273	1	FSM	ENSMUSG00000023912.11	ENSMUST00000233442.2	1273	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAAGGAAAATGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	43978023	43976750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_43976800_43978000
transcript_41031.known	chr17	+	3053	12	FSM	ENSMUSG00000023963.11	ENSMUST00000170988.2	3053	12	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_8	14.3492448040404	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGGCTGATGTCTGCCTAT	NA	False	NA	NA	False	CATAAA	-16	NA	43978315	44062322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_43978686_43987721_43987858_43991014_43991190_43993838_43993989_43996076_43996168_44002524_44002630_44012367_44012459_44036405_44036540_44041862_44041959_44042815_44042905_44057415_44057504_44060794
transcript_41037.known	chr17	+	2490	4	FSM	ENSMUSG00000023960.14	ENSMUST00000154166.8	2490	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	7.40870359029762	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTTTTGTTTTGCTTAC	NA	False	NA	NA	False	ATTAAA	-26	NA	44389703	44397458	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_44389790_44391537_44392402_44393634_44393812_44396095
transcript_41039.known	chr17	+	2534	4	FSM	ENSMUSG00000023960.14	ENSMUST00000024756.5	2534	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	7.40870359029762	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATAGTGTTTTGTT	NA	False	NA	NA	False	ATTAAA	-18	NA	44389735	44397450	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_44389874_44391537_44392402_44393634_44393812_44396095
transcript_4104.known	chr1	-	3149	8	FSM	ENSMUSG00000042305.13	ENSMUST00000049470.11	3149	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	214.632196074673	515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGGCTCAACTTGTGAGT	NA	False	NA	-9	True	AATAAA	-16	NA	134289717	134273834	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_134275933_134277820_134277977_134280092_134280174_134282398_134282580_134283297_134283455_134288494_134288663_134289271_134289362_134289499
transcript_41041.nic	chr17	+	1560	3	ISM	ENSMUSG00000023960.14	ENSMUST00000154166.8	2490	4	29	3185	-3	-3177	5prime_fragment	FALSE	canonical	1	1	junction_1	9	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGAAGGCTGTTTCCTGA	NA	False	NA	8	True	AGTAAA	-26	NA	44389732	44394273	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_44389790_44391537_44392402_44393634
transcript_41043.nic	chr17	+	1623	3	ISM	ENSMUSG00000023960.14	ENSMUST00000024756.5	2534	4	18	3177	-16	-3177	5prime_fragment	FALSE	canonical	3	19	junction_2	5.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGAAGGCTGTTTCCTGA	NA	False	NA	8	True	AGTAAA	-26	NA	44389753	44394273	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_44389874_44391537_44392402_44393634
transcript_41044.known	chr17	-	4445	4	FSM	ENSMUSG00000023961.17	ENSMUST00000143137.2	4445	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_3	11.5854314646552	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATATCAGCCTTC	NA	False	NA	NA	False	AATAAA	-9	NA	44416655	44407206	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_44410569_44412201_44412373_44412697_44413556_44416601
transcript_41046.known	chr17	-	4560	4	FSM	ENSMUSG00000023961.17	ENSMUST00000024757.14	4560	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	10.2740233382816	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCAGCCTTCTTAATTTG	NA	False	NA	NA	False	AATAAA	-17	NA	44416700	44407198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_44410569_44412201_44412373_44412697_44413556_44416539
transcript_41048.known	chr17	+	5862	6	FSM	ENSMUSG00000023959.11	ENSMUST00000024755.7	5862	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAGAGATCACTGGGCTT	NA	False	NA	NA	False	AATAAA	-23	NA	44499470	44591059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_44499849_44548019_44548130_44552920_44553047_44559606_44559714_44581377_44581560_44586100
transcript_41056.known	chr17	+	1180	12	FSM	ENSMUSG00000038954.15	ENSMUST00000127798.8	1180	12	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_10	31.9782984264006	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGGGAGTGGCCTGCTTT	NA	False	NA	22	True	AATAAA	-23	NA	45088282	45430173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_45088316_45097496_45097598_45234065_45234151_45302620_45302708_45305203_45305295_45313976_45314117_45344124_45344201_45347598_45347712_45348962_45349071_45352102_45352194_45359168_45359280_45430029
transcript_41057.known	chr17	+	1508	12	FSM	ENSMUSG00000038954.15	ENSMUST00000050630.14	1508	12	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_7	13.7774519348892	555	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGAGTGGCCTGCTTTGTTT	NA	False	NA	26	True	AATAAA	-27	NA	45088038	45430177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_45088316_45097496_45097598_45234065_45234151_45302620_45302708_45305203_45305295_45313976_45314117_45344124_45344201_45347598_45347712_45348962_45349071_45352102_45352274_45359168_45359280_45430029
transcript_41070.known	chr17	-	997	8	FSM	ENSMUSG00000023935.11	ENSMUST00000233553.2	997	8	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_7	5.17450579322138	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTTTTGTAATATGGT	NA	False	NA	NA	False	NA	NA	NA	45785752	45756805	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_45757010_45760360_45760477_45763603_45763667_45765016_45765138_45768083_45768246_45772087_45772237_45775352_45775507_45785724
transcript_41073.known	chr17	-	1160	8	FSM	ENSMUSG00000023935.11	ENSMUST00000024731.9	1160	8	0	0	0	0	multi-exon	TRUE	canonical	2	8	junction_7	6.20730313782869	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTAGCCTCTCCCATGGTA	NA	False	NA	NA	False	TATAAA	-21	NA	45785864	45759862	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_45760118_45760360_45760477_45763603_45763667_45765016_45765138_45768083_45768246_45772087_45772237_45775352_45775507_45785724
transcript_41082.known	chr17	-	975	7	FSM	ENSMUSG00000023935.11	ENSMUST00000233769.2	975	7	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_6	6.15539510420646	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTTGTAATATGGTATT	NA	False	NA	NA	False	NA	NA	NA	45785790	45756802	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_45757010_45760360_45760477_45765016_45765138_45768083_45768246_45772087_45772237_45775352_45775507_45785724
transcript_41119.known	chr17	-	2685	3	FSM	ENSMUSG00000023935.11	ENSMUST00000233583.2	2685	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	12.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCACTTGGTCACGTTTTT	NA	False	NA	NA	False	NA	NA	NA	45785805	45765790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_45768246_45772087_45772237_45785724
transcript_41120.known	chr17	+	483	1	FSM	ENSMUSG00000061242.7	ENSMUST00000095268.6	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	154	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTACACAAAGAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	45776713	45777196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_45776700_45777200
transcript_41121.known	chr17	-	3027	16	FSM	ENSMUSG00000023932.10	ENSMUST00000024727.10	3027	16	0	0	0	0	multi-exon	TRUE	canonical	3	561	junction_9	75.0022221893014	884	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTAGCCTTTTGTTTGAA	2184	False	NA	-2	True	AATAAA	-20	NA	45744663	45702809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
transcript_41122.known	chr17	+	2971	3	FSM	ENSMUSG00000097119.3	ENSMUST00000233940.2	2971	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	20.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AACAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45744756	45752488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_45745154_45747008_45747151_45750056
transcript_41123.known	chr17	+	4897	3	FSM	ENSMUSG00000097119.3	ENSMUST00000181149.2	4897	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	20.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGATTGTTTTTCTGC	NA	False	NA	14	True	NA	NA	NA	45744777	45753470	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_45745154_45747008_45748116_45750056
transcript_41124.known	chr17	+	3349	22	FSM	ENSMUSG00000023938.9	ENSMUST00000024733.9	3349	22	0	0	0	0	multi-exon	TRUE	canonical	3	146	junction_8	22.4045468336421	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTT	NA	False	NA	19	True	AATACA	-33	NA	45817766	45831769	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_45818008_45818444_45818637_45819406_45819553_45819790_45819959_45820321_45820467_45825417_45825564_45825710_45825820_45826170_45826210_45826325_45826438_45826870_45827005_45827378_45827524_45827746_45827920_45828027_45828142_45828238_45828380_45828618_45828757_45828837_45828948_45829075_45829185_45829463_45829587_45829780_45829892_45830438_45830523_45830629_45830741_45831211
transcript_41128.known	chr17	+	2435	6	FSM	ENSMUSG00000023947.9	ENSMUST00000024742.9	2435	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	2.44948974278318	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGGTTATACGTTGCAA	NA	False	NA	NA	False	ATTAAA	-17	NA	45866628	45874095	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_45867241_45869420_45869524_45870133_45870357_45871049_45871139_45871333_45871574_45872927
transcript_41133.known	chr17	+	850	4	FSM	ENSMUSG00000037089.12	ENSMUST00000226086.2	850	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	186.912338335976	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGAGCCAGCTCTAATGG	NA	False	NA	7	True	AATAAA	-16	NA	45874885	45876981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_45874995_45875505_45875700_45875850_45876006_45876589
transcript_41134.known	chr17	+	1906	4	FSM	ENSMUSG00000037089.12	ENSMUST00000224905.2	1906	4	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_3	17.6823829464998	554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTGTTTTGGTTGGCAT	NA	False	NA	9	True	ATTAAA	-19	NA	45874799	45878596	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_45874995_45875505_45875700_45875850_45876006_45877234
transcript_41171.known	chr17	-	2520	11	FSM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	0	0	0	0	multi-exon	TRUE	canonical	3	9221	junction_4	988.252604347694	67364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTGCTCTCCTTGTAAC	NA	False	NA	-24	True	AATAAA	-19	NA	45884197	45878700	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
transcript_41172.known	chr17	-	351	3	FSM	ENSMUSG00000023944.15	ENSMUST00000130406.2	351	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	4612	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAACCCTCAGGAGCGCACG	NA	False	NA	NA	False	NA	NA	NA	45883481	45882463	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_45882546_45882690_45882838_45883359
transcript_41173.known	chr17	-	703	6	FSM	ENSMUSG00000023944.15	ENSMUST00000163966.8	703	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4038.94278246177	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATGGGCTTGGCAGTGTT	NA	False	NA	-171	True	AAGAAA	-40	NA	45884181	45881588	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_45881726_45881943_45882104_45882338_45882408_45882444_45882546_45882690_45882838_45884092
transcript_41187.known	chr17	-	1996	13	FSM	ENSMUSG00000023942.16	ENSMUST00000051574.13	1996	13	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_12	699.864927444337	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCTGTGCATCCTTCC	NA	False	NA	-4	True	AATAAA	-15	NA	45906498	45896128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45906407
transcript_41190.known	chr17	-	1988	13	FSM	ENSMUSG00000023942.16	ENSMUST00000064889.13	1988	13	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_12	659.372555287727	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCTGTGCATCCTTCC	NA	False	NA	-4	True	AATAAA	-15	NA	45906496	45896128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45906407
transcript_41192.known	chr17	-	2033	13	FSM	ENSMUSG00000023942.16	ENSMUST00000171847.8	2033	13	0	0	0	0	multi-exon	TRUE	canonical	3	17	junction_12	693.627476668052	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	-1	True	AATAAA	-18	NA	45910529	45896125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45910398
transcript_41202.known	chr17	-	1062	10	FSM	ENSMUSG00000023942.16	ENSMUST00000164217.8	1062	10	0	0	0	0	multi-exon	FALSE	canonical	3	1063	junction_1	471.854968301819	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAGGAATCTGGGGTGCC	NA	False	NA	NA	False	NA	NA	NA	45906528	45899292	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
transcript_41203.known	chr17	-	616	2	FSM	ENSMUSG00000079471.5	ENSMUST00000169137.3	616	2	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_1	0	1304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTCCTAGCAGGCTACAG	NA	False	NA	NA	False	NA	NA	NA	45912892	45912179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_45912612_45912708
transcript_41204.known	chr17	-	437	2	FSM	ENSMUSG00000079471.5	ENSMUST00000208801.2	437	2	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	0	666	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTCCGCACGCACGGGCAT	NA	False	NA	NA	False	NA	NA	NA	45912896	45912278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_45912612_45912792
transcript_41205.known	chr17	-	804	2	FSM	ENSMUSG00000079471.5	ENSMUST00000178858.3	804	2	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	0	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGGTGGTGGCTTTTGT	NA	False	NA	-5	True	AATAAA	-20	NA	45912993	45911896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_45912612_45912904
transcript_41206.known	chr17	-	442	2	FSM	ENSMUSG00000079471.5	ENSMUST00000113529.4	442	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGGACGGCAGACTGCCCA	NA	False	NA	NA	False	NA	NA	NA	45913028	45912261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_45912612_45912936
transcript_41209.known	chr17	-	3284	24	FSM	ENSMUSG00000036026.16	ENSMUST00000113523.9	3284	24	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_20	27.310993375713	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGGTTGGCAGTCCCTC	NA	False	NA	-6	True	AATAAA	-20	NA	45997185	45971096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_45971907_45972148_45972230_45972379_45972496_45972682_45972851_45973788_45973895_45974432_45974596_45975669_45975736_45975844_45975932_45976090_45976198_45976952_45977107_45977242_45977381_45977503_45977638_45978620_45978745_45980868_45980950_45984085_45984157_45984658_45984768_45984904_45984957_45985044_45985188_45986311_45986350_45988851_45988943_45989888_45989928_45990162_45990243_45990457_45990641_45997042
transcript_41227.known	chr17	+	645	3	FSM	ENSMUSG00000023939.8	ENSMUST00000024734.8	645	3	0	0	0	0	multi-exon	FALSE	canonical	3	814	junction_1	143	10081	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGAGCTGTGATCG	NA	False	NA	37	True	AATAAA	-26	NA	45997247	46009421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_45997354_46006407_46006499_46008973
transcript_41228.known	chr17	+	510	2	FSM	ENSMUSG00000023939.8	ENSMUST00000148537.2	510	2	0	0	0	0	multi-exon	FALSE	canonical	3	1100	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTTTGTGTGAGCAGAG	NA	False	NA	-58	True	NA	NA	NA	46006341	46009326	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_46006499_46008973
transcript_41231.known	chr17	-	518	2	FSM	ENSMUSG00000094690.3	ENSMUST00000233108.2	518	2	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAATCTGATTTCATCTA	NA	False	NA	NA	False	AATAGA	-15	NA	46044770	46043789	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_46044049_46044511
transcript_41237.known	chr17	+	2634	5	FSM	ENSMUSG00000097727.9	ENSMUST00000180558.9	2634	5	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	1.29903810567666	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTCCCACGGCAACTGAT	NA	False	NA	NA	False	ATTAAA	-16	NA	46045431	46092178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_46045773_46060144_46060283_46087083_46087345_46090184_46091900_46091999
transcript_41238.known	chr17	+	735	5	FSM	ENSMUSG00000097727.9	ENSMUST00000233473.2	735	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.22474487139159	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCATGGCTCCCACGGCAA	NA	False	NA	NA	False	ATTAAA	-11	NA	46078120	46092173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_46078234_46087083_46087345_46090184_46090318_46091845_46091900_46091999
transcript_41240.nnic	chr17	+	937	3	Intergenic	novelGene_62	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	2.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTGAATTTTTTTTTC	8957	False	NA	NA	False	NA	NA	NA	46133257	46137226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr17_+_46133379_46136005_46136084_46136488
transcript_4125.known	chr1	-	725	4	FSM	ENSMUSG00000042305.13	ENSMUST00000188205.2	725	4	0	0	0	0	multi-exon	FALSE	canonical	3	517	junction_1	71.4749373323731	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTTGGACTTGTTGATAT	NA	False	NA	NA	False	NA	NA	NA	134289691	134283179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_134283455_134288494_134288663_134289271_134289362_134289499
transcript_41258.known	chr17	-	966	5	FSM	ENSMUSG00000023966.9	ENSMUST00000024762.3	966	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	1.22474487139159	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTGTCTTGATTGTTGT	NA	False	NA	NA	False	CATAAA	-21	NA	46455142	46440196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_46440425_46445898_46446046_46447667_46447798_46452472_46452639_46454847
transcript_41259.known	chr17	+	884	6	FSM	ENSMUSG00000023967.10	ENSMUST00000024763.10	884	6	0	0	0	0	multi-exon	FALSE	canonical	3	1040	junction_5	46.4732180938656	8012	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTGGTCAGTGCTTAGAA	NA	False	NA	19	True	AATAAA	-19	NA	46421911	46439836	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_46422056_46428865_46428898_46433649_46433758_46436215_46436340_46436568_46436639_46439430
transcript_41260.known	chr17	+	621	5	FSM	ENSMUSG00000023967.10	ENSMUST00000123646.2	621	5	0	0	0	0	multi-exon	FALSE	canonical	3	1063	junction_2	42.9905512874632	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGCATGGCTGTACTGT	NA	False	NA	NA	False	NA	NA	NA	46421921	46436791	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_46422056_46428865_46428898_46433649_46433758_46436215_46436340_46436568
transcript_41261.known	chr17	-	1272	3	FSM	ENSMUSG00000034509.10	ENSMUST00000171172.3	1272	3	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	3.5	555	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTTTGATTTAGACTTTT	NA	False	NA	-2	True	AATAAA	-21	NA	46464479	46458312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_46459211_46463704_46463968_46464368
transcript_41265.known	chr17	+	2966	12	FSM	ENSMUSG00000023952.14	ENSMUST00000024748.14	2966	12	0	0	0	0	multi-exon	TRUE	canonical	3	39	junction_1	11.1762735698931	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGCTTATTCTTAAGACA	NA	False	NA	5	True	AATAAA	-18	NA	46471957	46480296	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_46472253_46474408_46474436_46475119_46475305_46475650_46475760_46475911_46476110_46476380_46476556_46476703_46476924_46477236_46477373_46477517_46477577_46478148_46478321_46478651_46478817_46479071
transcript_41268.known	chr17	-	3238	11	FSM	ENSMUSG00000023953.10	ENSMUST00000024749.9	3238	11	0	0	0	0	multi-exon	TRUE	canonical	3	10	junction_7	5.44426303552648	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGGCTTGCATACTTTT	7123	False	NA	-12	True	AATAAA	-15	NA	46513571	46482280	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_46484023_46486076_46486247_46492391_46492458_46493610_46493735_46495615_46495736_46498952_46499057_46501532_46501703_46505127_46505343_46509559_46509695_46510317_46510461_46513322
transcript_41275.nic	chr17	-	748	3	ISM	ENSMUSG00000023953.10	ENSMUST00000233438.2	2130	10	-43	26208	-20	-5870	5prime_fragment	FALSE	canonical	3	22	junction_1	3	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGAAAGCATTCTGTCAGC	7103	False	NA	NA	False	AATAAA	-17	NA	46513591	46509358	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_-_46509695_46510317_46510461_46513322
transcript_41276.known	chr17	+	5081	32	FSM	ENSMUSG00000067150.7	ENSMUST00000087031.7	5081	32	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_23	77.9414252168146	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGGGCCCTATTTTCCTTT	NA	False	NA	14	True	AGTAAA	-16	NA	46513707	46554524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_46513952_46515580_46515703_46517412_46517486_46518704_46518843_46519000_46519184_46525115_46525143_46525502_46525689_46526657_46526735_46528507_46528608_46529470_46529555_46530316_46530443_46531686_46531778_46532278_46532408_46533586_46533718_46535941_46536098_46537338_46537381_46537844_46537935_46538655_46538856_46540237_46540338_46541124_46541307_46544643_46544745_46545378_46545476_46546790_46546928_46547838_46547937_46549298_46549346_46549815_46549914_46550439_46550503_46551083_46551167_46551740_46551849_46552342_46552481_46552651_46552817_46553059
transcript_41279.nic	chr17	+	1838	13	ISM	ENSMUSG00000067150.7	ENSMUST00000087031.7	5081	32	-66	21925	-66	12004	5prime_fragment	FALSE	canonical	2	141	junction_5	50.2186192783336	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAGTGCTTCAGGCAGTT	NA	False	NA	NA	False	CATAAA	-20	NA	46513641	46532599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_46513952_46515580_46515703_46517412_46517486_46518704_46518843_46519000_46519184_46525115_46525143_46525502_46525689_46526657_46526735_46528507_46528608_46529470_46529555_46530316_46530443_46531686_46531778_46532278
transcript_4128.known	chr1	+	2420	9	FSM	ENSMUSG00000026456.19	ENSMUST00000154237.8	2420	9	0	0	0	0	multi-exon	TRUE	canonical	3	35	junction_5	130.869925880624	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAATCATTGTCGTCGTGTC	7971	False	NA	39	True	AATAAA	-27	NA	134333518	134339474	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134335554_134336226_134337338_134337425_134338230_134338331_134338644
transcript_41282.known	chr17	+	2137	5	FSM	ENSMUSG00000067150.7	ENSMUST00000233340.2	2137	5	0	0	0	0	multi-exon	FALSE	canonical	3	272	junction_2	19.3180614969515	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAAGGAAAGAGGTTGAGG	NA	False	NA	NA	False	NA	NA	NA	46513742	46520595	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_46513952_46515580_46515703_46517412_46517486_46518704_46518843_46519000
transcript_41287.known	chr17	-	1314	9	FSM	ENSMUSG00000067148.16	ENSMUST00000087026.13	1314	9	0	0	0	0	multi-exon	TRUE	canonical	3	702	junction_8	54.719597723302	7045	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTTTTTTTTTTGTCTA	NA	False	NA	2	True	AATAAA	-25	NA	46558980	46554845	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_46555147_46555231_46555349_46555451_46555602_46555724_46555878_46555956_46556077_46556541_46556675_46557032_46557141_46558654_46558727_46558820
transcript_41288.known	chr17	+	2035	9	FSM	ENSMUSG00000071074.10	ENSMUST00000095263.10	2035	9	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_8	7.84219357067906	543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGATGGTTCACAGTTGC	2580	False	NA	NA	False	NA	NA	NA	46559005	46563463	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_46559255_46559766_46559965_46560104_46560212_46561336_46561383_46561495_46561589_46561719_46561852_46562039_46562154_46562289_46562414_46562491
transcript_41289.known	chr17	+	1570	8	FSM	ENSMUSG00000071074.10	ENSMUST00000151488.2	1570	8	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_7	7.73542078324622	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGATTGAAGTCTAGACC	2645	False	NA	7	True	ATTAAA	-2	NA	46559070	46562927	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_46559255_46559766_46559965_46560104_46560212_46561336_46561383_46561495_46561589_46561719_46561852_46562039_46562414_46562491
transcript_41290.known	chr17	+	599	2	FSM	ENSMUSG00000071074.10	ENSMUST00000149989.2	599	2	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGTAGCTCCTGTTGGC	5841	False	NA	23	True	ATTAAA	-18	NA	46562266	46562943	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_46562414_46562491
transcript_41300.nic	chr17	-	2523	11	NIC	ENSMUSG00000012296.17	novel	2559	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_7	117.719199793407	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTAATTTCTTTCTCCTT	5819	False	NA	-30	True	AATAAA	-18	NA	46593939	46568799	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575019_46575117_46575808_46575905_46593271_46593366_46593885
transcript_41301.nic	chr17	-	2613	11	NIC	ENSMUSG00000012296.17	novel	2559	11	NA	NA	-44	0	combination_of_known_junctions	FALSE	canonical	3	80	junction_7	97.6076328982524	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTAATTTCTTTCTCCTT	5762	False	NA	-30	True	AATAAA	-18	NA	46593996	46568799	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575808_46575905_46582725_46582856_46593271_46593366_46593885
transcript_41303.known	chr17	-	2559	11	FSM	ENSMUSG00000012296.17	ENSMUST00000164342.10	2559	11	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_7	88.074059745194	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTAATTTCTTTCTCCTT	5819	False	NA	-30	True	AATAAA	-18	NA	46593939	46568799	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574740_46575808_46575905_46582725_46582856_46593271_46593366_46593885
transcript_41306.known	chr17	-	2426	10	FSM	ENSMUSG00000012296.17	ENSMUST00000012440.14	2426	10	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_7	101.660412679532	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAATTTCTTTCTCCTTCCC	5822	False	NA	-27	True	AATAAA	-21	NA	46593936	46568796	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575808_46575905_46593271_46593366_46593885
transcript_41309.known	chr17	-	2412	10	FSM	ENSMUSG00000012296.17	ENSMUST00000225080.2	2412	10	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_7	91.006850915633	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGCTTAATTTCTTTCTC	5833	False	NA	-33	True	AATAAA	-15	NA	46593925	46568802	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574740_46575808_46575905_46593271_46593366_46593885
transcript_4131.known	chr1	+	1837	9	FSM	ENSMUSG00000026456.19	ENSMUST00000027726.14	1837	9	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_1	53.3666562565053	821	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTGTCGTCGTGTCTGGG	7971	False	NA	43	True	AATAAA	-31	NA	134333518	134339478	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141_134336226_134337338_134337425_134338230_134338331_134338644
transcript_41311.known	chr17	-	2368	9	FSM	ENSMUSG00000012296.17	ENSMUST00000180283.2	2368	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	136.842461885922	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTAATCCCCTTTTTGCT	5806	False	NA	-7	True	AATAAA	-41	NA	46593952	46568776	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575808_46575905_46593885
transcript_41315.known	chr17	+	955	8	FSM	ENSMUSG00000023968.16	ENSMUST00000024764.12	955	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.24539969815448	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTTCAATTCTTTTTTGT	NA	False	NA	NA	False	AATAAA	-18	NA	46739867	46742697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_46739920_46740244_46740340_46740734_46740793_46740886_46741019_46741707_46741780_46741914_46742010_46742101_46742160_46742304
transcript_41316.known	chr17	+	1035	8	FSM	ENSMUSG00000023968.16	ENSMUST00000113465.10	1035	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.30930734141595	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAATTCTTTTTTGTTTTGT	NA	False	NA	NA	False	AATAAA	-23	NA	46739851	46742702	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_46739920_46740244_46740340_46740734_46740793_46740886_46741019_46741707_46741780_46741914_46742010_46742101_46742219_46742304
transcript_41326.nnic	chr17	-	1594	10	NNC	ENSMUSG00000067144.8	novel	1989	10	NA	NA	-45	-56	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_9	11.5960827783553	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGGGAAGTCATTGACTT	3600	False	NA	NA	False	AATAAA	-34	NA	46748600	46743164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_46743444_46743872_46744080_46744500_46744610_46744774_46744990_46745474_46745585_46745810_46745935_46747734_46747904_46748004_46748160_46748248_46748353_46748478
transcript_41328.known	chr17	-	1989	10	FSM	ENSMUSG00000067144.8	ENSMUST00000087012.7	1989	10	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_9	10.8297714942322	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTCTAGTAGCCAGGACT	2817	False	NA	NA	False	NA	NA	NA	46749383	46743108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_46743444_46743872_46744080_46744500_46744610_46744774_46744990_46745474_46745585_46745810_46745935_46747734_46747904_46748004_46748160_46748248_46748353_46748922
transcript_41330.nic	chr17	-	1101	5	ISM	ENSMUSG00000067144.8	ENSMUST00000233715.2	1410	10	2790	-174	2790	-56	3prime_fragment	FALSE	canonical	3	15	junction_3	9.35414346693485	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGGGAAGTCATTGACTT	6435	False	NA	NA	False	AATAAA	-34	NA	46745765	46743164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_-_46743444_46743872_46744080_46744500_46744610_46744774_46744990_46745474
transcript_41335.nic	chr17	-	716	3	ISM	ENSMUSG00000067144.8	ENSMUST00000233715.2	1410	10	3825	-174	3825	-56	3prime_fragment	FALSE	canonical	3	32	junction_1	4.5	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGGGAAGTCATTGACTT	7470	False	NA	NA	False	AATAAA	-34	NA	46744730	46743164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_-_46743444_46743872_46744080_46744500
transcript_41342.nnic	chr17	+	912	5	Antisense	novelGene_ENSMUSG00000091742.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	1.92028643696715	49	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGGCAGTGGTGGTGCAT	NA	False	NA	NA	False	AATAAA	-15	NA	46747881	46751404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr17_+_46748049_46748255_46748369_46748584_46748622_46750499_46750937_46751246
transcript_41367.known	chr17	+	1190	4	FSM	ENSMUSG00000040658.8	ENSMUST00000046497.8	1190	4	0	0	0	0	multi-exon	FALSE	canonical	3	629	junction_2	31.4960314960472	6297	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTGGTCACGGTGTC	NA	False	NA	14	True	NA	NA	NA	46807636	46810550	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_46807899_46809350_46809420_46809568_46809680_46809802
transcript_41372.known	chr17	-	791	3	FSM	ENSMUSG00000040327.17	ENSMUST00000183016.8	791	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATCCCCATCATTTTAGC	805	False	NA	NA	False	AATAAA	-15	NA	46831497	46830385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_46830858_46830937_46831167_46831407
transcript_41373.known	chr17	-	4235	20	FSM	ENSMUSG00000023972.11	ENSMUST00000044442.10	4235	20	0	0	0	0	multi-exon	FALSE	canonical	3	399	junction_15	41.2008794247642	156	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTTTGTTAGACCCTTC	NA	False	NA	-20	True	AATAAA	-17	NA	46940430	46875396	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_46876422_46877028_46877208_46878850_46879003_46882528_46882610_46883447_46883681_46884345_46884502_46885197_46885402_46887189_46887318_46887417_46887569_46887686_46887837_46889975_46890096_46890218_46890355_46890492_46890627_46897126_46897394_46897639_46897789_46900937_46901089_46901186_46901378_46901684_46901788_46902440_46902729_46940193
transcript_41376.known	chr17	-	2313	16	FSM	ENSMUSG00000003546.11	ENSMUST00000233974.2	2313	16	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_15	23.4960043884534	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTCGGAGTCTTCATTG	NA	False	NA	-2	True	AATAAA	-18	NA	46956948	46941549	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_46942000_46942753_46942818_46942958_46943075_46943675_46943817_46946335_46946445_46946657_46946729_46946901_46946955_46947118_46947219_46947545_46947720_46947838_46947941_46950320_46950409_46950816_46951037_46951548_46951631_46953039_46953271_46955174_46955439_46956900
transcript_41378.known	chr17	-	2322	16	FSM	ENSMUSG00000003546.11	ENSMUST00000003642.7	2322	16	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_15	25.3531501439608	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTTGTGTTCGGAGTC	NA	False	NA	-9	True	AATAAA	-11	NA	46956070	46941556	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_46942000_46942753_46942818_46942958_46943075_46943675_46943817_46946335_46946445_46946657_46946729_46946901_46946955_46947118_46947219_46947545_46947720_46947838_46947941_46950320_46950409_46950816_46951037_46951548_46951631_46953039_46953271_46955174_46955439_46956006
transcript_41382.known	chr17	+	991	7	FSM	ENSMUSG00000002767.14	ENSMUST00000113430.2	991	7	0	0	0	0	multi-exon	FALSE	canonical	1	17	junction_1	404.985047734961	1847	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACCTTTTCACTTGGGAGG	NA	False	NA	35	True	AATAAA	-24	NA	46957195	46961065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_46957325_46958321_46958485_46959162_46959305_46959397_46959514_46959584_46959696_46959960_46960035_46960809
transcript_4139.nic	chr1	+	1899	8	NIC	ENSMUSG00000026456.19	novel	2420	9	NA	NA	-21	0	intron_retention	FALSE	canonical	3	337	junction_4	39.0227563122351	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAATCATTGTCGTCGTGTC	8164	False	NA	39	True	AATAAA	-27	NA	134333711	134339474	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141_134336226_134337338_134337425_134338230_134338331_134338644
transcript_41396.known	chr17	-	406	4	FSM	ENSMUSG00000023971.10	ENSMUST00000233247.2	406	4	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	166.85522666871	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTGTCCCAGGAGACCT	NA	False	NA	NA	False	NA	NA	NA	46985196	46978873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_46979013_46980830_46980949_46981036_46981112_46985122
transcript_41404.known	chr17	-	2274	7	FSM	ENSMUSG00000023971.10	ENSMUST00000233155.2	2274	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	160.801551263938	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCTTGCATCAGCCTGC	NA	False	NA	-3	True	NA	NA	NA	46985213	46977249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_46978160_46978360_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983774_46985122
transcript_41405.known	chr17	-	1289	7	FSM	ENSMUSG00000023971.10	ENSMUST00000233136.2	1289	7	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_2	28.055995596109	1629	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	46985278	46978386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46983631_46983774_46985122
transcript_41407.known	chr17	-	3038	15	FSM	ENSMUSG00000059409.10	ENSMUST00000233988.2	3038	15	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_14	104.207504919908	1993	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGAGTCGCCTTGGTGT	1000	False	NA	NA	False	AATAAA	-15	NA	47016037	46993916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_46995053_46995186_46995304_46995431_46995505_46995590_46995693_46996227_46996356_46996444_46996616_46996979_46997034_46997188_46997358_46997484_46997616_46997959_46998053_46998175_46998287_46998371_46998572_46998762_46998956_47010994_47011076_47015758
transcript_41416.known	chr17	-	2100	12	FSM	ENSMUSG00000063576.13	ENSMUST00000071841.7	2100	12	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_11	42.5343808432544	499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCCTATTTCTGGCGAC	NA	False	NA	0	True	TATAAA	-17	NA	46991830	46985475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46989967_46990121_46991627
transcript_41419.known	chr17	-	1854	12	FSM	ENSMUSG00000063576.13	ENSMUST00000233733.2	1854	12	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	123.030534407903	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCCGGCTAATTCTTGCT	NA	False	NA	NA	False	NA	NA	NA	46991729	46986689	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_46987148_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46989967_46990121_46991627
transcript_41422.known	chr17	-	1954	11	FSM	ENSMUSG00000063576.13	ENSMUST00000165007.9	1954	11	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_10	118.520082686438	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACGTGTCCTATTTCTGGC	NA	False	NA	-3	True	TATAAA	-14	NA	46991840	46985478	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46991627
transcript_41432.known	chr17	+	748	4	FSM	ENSMUSG00000002768.9	ENSMUST00000232732.2	748	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	423.826222249953	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCCCAGCCCACCTTAG	NA	False	NA	-69	True	NA	NA	NA	46991383	46993963	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_46991429_46992542_46992824_46992934_46993038_46993644
transcript_41434.known	chr17	+	706	4	FSM	ENSMUSG00000002768.9	ENSMUST00000232762.2	706	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	433.248453225424	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGCGACTCAGACCTCTC	NA	False	NA	NA	False	NA	NA	NA	46991708	46993900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_46991775_46992542_46992824_46992934_46993038_46993644
transcript_41435.known	chr17	+	673	4	FSM	ENSMUSG00000002768.9	ENSMUST00000233491.2	673	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	413.462076723959	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGAGCTGCCTTACCTCCC	NA	False	NA	NA	False	NA	NA	NA	46991928	46993802	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_46992060_46992542_46992824_46992934_46993038_46993644
transcript_41440.known	chr17	+	766	4	FSM	ENSMUSG00000002768.9	ENSMUST00000233612.2	766	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	424.297327616169	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAGTTCTGTACATATGG	NA	False	NA	-99	True	NA	NA	NA	46992105	46993933	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_46992199_46992542_46992824_46992934_46993038_46993644
transcript_41444.known	chr17	+	945	4	FSM	ENSMUSG00000002768.9	ENSMUST00000233430.2	945	4	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_1	155.5913450892	6340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCCACACCGCCTGTGCT	NA	False	NA	-4	True	AATAAA	-21	NA	46991911	46994028	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_46992089_46992542_46992824_46992934_46993038_46993644
transcript_41445.known	chr17	+	859	4	FSM	ENSMUSG00000002768.9	ENSMUST00000002845.8	859	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	390.850639275699	1851	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCCTGTGCTCCTGAATCC	NA	False	NA	5	True	AATAAA	-30	NA	46992049	46994037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_46992132_46992542_46992824_46992934_46993038_46993644
transcript_41448.known	chr17	-	1035	6	FSM	ENSMUSG00000002769.10	ENSMUST00000002846.9	1035	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	8.1338797630651	386	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGCCTGGTGTTTCTT	2979	False	NA	NA	False	AGTAAA	-23	NA	47040094	47036589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_47036898_47036986_47037109_47037194_47037338_47037531_47037643_47038190_47038319_47039871
transcript_41450.known	chr17	-	1619	4	FSM	ENSMUSG00000023973.14	ENSMUST00000129200.2	1619	4	0	0	0	0	multi-exon	FALSE	canonical	2	32	junction_3	233.055072175369	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTGCTACTGCTATGAA	NA	False	NA	-18	True	NA	NA	NA	47063123	47046681	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_47047835_47048100_47048219_47048652_47048776_47062898
transcript_41452.known	chr17	-	1908	6	FSM	ENSMUSG00000023973.14	ENSMUST00000059844.13	1908	6	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_4	48.1730214954387	950	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCAAAGGGGTTTTGACC	NA	False	NA	33	True	NA	NA	NA	47063140	47046630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_47047835_47048100_47048219_47048652_47048776_47054111_47054209_47058346_47058471_47062898
transcript_41453.known	chr17	-	561	3	FSM	ENSMUSG00000023973.14	ENSMUST00000121671.2	561	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	258.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGGACAGTGTGCTCATA	NA	False	NA	NA	False	NA	NA	NA	47063121	47057912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_47058127_47058346_47058471_47062898
transcript_41454.known	chr17	-	531	2	FSM	ENSMUSG00000023973.14	ENSMUST00000148656.2	531	2	0	0	0	0	multi-exon	FALSE	canonical	3	518	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAATTTCTCATCCAGAA	NA	False	NA	NA	False	NA	NA	NA	47063103	47058144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_47058471_47062898
transcript_41456.known	chr17	-	1283	4	FSM	ENSMUSG00000036858.9	ENSMUST00000041012.9	1283	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAACACAGGCAT	NA	False	NA	NA	False	NA	NA	NA	47074638	47066588	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_47067329_47067945_47067991_47069469_47069791_47074461
transcript_41460.known	chr17	+	762	1	FSM	ENSMUSG00000062619.7	ENSMUST00000071430.7	762	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1206	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTAACTTGGCAGTCGTT	NA	False	NA	10	True	GATAAA	-18	NA	47083560	47084322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_47083600_47084300
transcript_4147.known	chr1	+	3123	8	FSM	ENSMUSG00000026457.15	ENSMUST00000027727.15	3123	8	0	0	0	0	multi-exon	FALSE	canonical	3	879	junction_4	75.4485904170407	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTCTTGGTTCCATTC	NA	False	NA	8	True	NA	NA	NA	134343115	134361089	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_134343324_134350658_134350894_134351695_134351813_134352488_134352661_134353646_134353834_134355819_134356008_134358794_134358989_134359267
transcript_41478.known	chr17	-	2606	7	FSM	ENSMUSG00000063888.8	ENSMUST00000078286.6	2606	7	0	0	0	0	multi-exon	FALSE	canonical	3	1943	junction_1	138.303309994937	5983	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGAGCCGTTCGCCCAG	NA	False	NA	NA	False	NA	NA	NA	47093582	47084832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_47086663_47088977_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
transcript_41479.known	chr17	-	1310	6	FSM	ENSMUSG00000063888.8	ENSMUST00000233192.2	1310	6	0	0	0	0	multi-exon	FALSE	canonical	3	2131	junction_4	73.7276067697847	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCCCTAAATCTCTTTATC	NA	False	NA	NA	False	NA	NA	NA	47093582	47088443	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
transcript_41482.known	chr17	-	540	5	FSM	ENSMUSG00000036568.8	ENSMUST00000233455.2	540	5	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_4	12.6959639255946	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCCTATCGGGGTGACTC	NA	False	NA	NA	False	NA	NA	NA	47169408	47136720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_47137050_47140837_47140907_47140990_47141040_47141876_47141923_47169361
transcript_41483.known	chr17	+	1164	1	FSM	ENSMUSG00000036430.9	ENSMUST00000040434.9	1164	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	472	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGCTGGTTTGGCCTTCC	5307	False	NA	21	True	ATTAAA	-21	NA	47201609	47202773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_47201600_47202800
transcript_41484.nic	chr17	-	646	2	ISM	ENSMUSG00000023977.16	ENSMUST00000225599.2	3625	29	133	43857	56	-43857	5prime_fragment	FALSE	canonical	3	100	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTCACGAAATGATTCCCC	NA	False	NA	NA	False	AATAAA	-17	NA	47321349	47311407	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_-_47311772_47321067
transcript_41487.nic	chr17	+	724	3	ISM	ENSMUSG00000064043.16	ENSMUST00000190080.9	7044	19	195	131138	-79	-87971	internal_fragment	FALSE	canonical	3	5	junction_1	14.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGAATTTATTTTTAT	NA	False	NA	NA	False	NA	NA	NA	47452062	47541745	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_47452111_47452749_47452836_47541155
transcript_4149.known	chr1	+	3446	8	FSM	ENSMUSG00000026457.15	ENSMUST00000112237.2	3446	8	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_1	322.905874956825	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGATGTCTTGGTTCCA	NA	False	NA	5	True	NA	NA	NA	134343193	134361086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_134343728_134350658_134350894_134351695_134351813_134352488_134352661_134353646_134353834_134355819_134356008_134358794_134358989_134359267
transcript_41490.known	chr17	+	7044	19	FSM	ENSMUSG00000064043.16	ENSMUST00000190080.9	7044	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	18.4658510315931	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTAGAGGTGCATTCCTTA	NA	False	NA	NA	False	AATAAA	-20	NA	47451867	47672883	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_47451892_47452057_47452111_47452749_47452836_47541155_47541243_47597667_47597783_47624718_47626427_47627539_47627587_47628693_47628848_47630277_47630605_47634203_47634589_47635513_47635581_47637648_47637789_47637926_47638031_47639943_47640020_47648476_47648566_47651991_47652106_47659575_47659783_47664658_47664871_47669834
transcript_41493.nnic	chr17	+	780	2	NNC	ENSMUSG00000064043.16	novel	3503	12	NA	NA	-16081	-87964	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_1	0	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTATTTTTATCTATGTG	2012	False	NA	NA	False	AAAAAG	-1	NA	47507231	47541752	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_47507415_47541155
transcript_41508.known	chr17	+	1017	7	FSM	ENSMUSG00000034729.17	ENSMUST00000120737.8	1017	7	0	0	0	0	multi-exon	FALSE	canonical	3	977	junction_2	314.646892034018	3315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGGCTGGTTTTGTTTA	7137	False	NA	5	True	NA	NA	NA	47679811	47689604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_47679880_47683351_47683417_47683500_47683571_47685897_47686035_47686858_47686968_47688684_47688775_47689126
transcript_41509.known	chr17	+	1018	7	FSM	ENSMUSG00000034729.17	ENSMUST00000119945.8	1018	7	0	0	0	0	multi-exon	FALSE	canonical	3	774	junction_2	381.394116659162	3046	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCTGGTTTTGTTTACT	7141	False	NA	7	True	NA	NA	NA	47679815	47689606	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_47679880_47683351_47683417_47683497_47683571_47685897_47686035_47686858_47686968_47688684_47688775_47689126
transcript_41510.known	chr17	+	531	6	FSM	ENSMUSG00000034729.17	ENSMUST00000125963.2	531	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	749.891032083995	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGTGCTCGCTGCTAAA	7143	False	NA	NA	False	NA	NA	NA	47679817	47685991	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_47679880_47680953_47681084_47681188_47681296_47683351_47683417_47683497_47683571_47685897
transcript_41511.known	chr17	+	1668	4	FSM	ENSMUSG00000023979.15	ENSMUST00000024774.14	1668	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	4.64279609239471	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATTGTCCTGGAGGTGAA	1130	False	NA	NA	False	ATTAAA	-15	NA	47696317	47703892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_47696622_47700034_47700185_47701905_47702027_47702799
transcript_41512.nnic	chr17	+	1533	3	NIC	ENSMUSG00000023979.15	novel	1668	4	NA	NA	-15	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	7.5	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATTGTCCTGGAGGTGAA	1115	False	NA	NA	False	ATTAAA	-15	NA	47696302	47703892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_47696622_47701905_47702027_47702799
transcript_41516.known	chr17	+	4866	5	FSM	ENSMUSG00000034382.15	ENSMUST00000150819.3	4866	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	3.20156211871642	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAGGTTGGTGACTTAA	9562	False	NA	13	True	AATAAA	-31	NA	47747729	47781563	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_47747875_47757489_47757597_47774878_47774955_47776603_47779779_47780200
transcript_41519.known	chr17	+	1410	5	FSM	ENSMUSG00000034382.15	ENSMUST00000037701.13	1410	5	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_4	2.8613807855649	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGTTTGTGTGTTGTGT	9372	False	NA	33	True	AATATA	-23	NA	47747539	47781069	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_47747875_47757489_47757597_47774878_47774955_47776603_47776810_47780383
transcript_4152.known	chr1	-	982	1	FSM	ENSMUSG00000102722.2	ENSMUST00000192012.2	982	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATATCTACTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	134383211	134382229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_134382200_134383200
transcript_41522.known	chr17	-	2784	9	FSM	ENSMUSG00000023980.8	ENSMUST00000067103.4	2784	9	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	52.1152568831815	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTATGATTATTTTAT	NA	False	NA	NA	False	NA	NA	NA	47813217	47798974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_47800822_47801067_47801208_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
transcript_41523.known	chr17	-	1263	8	FSM	ENSMUSG00000023980.8	ENSMUST00000233174.2	1263	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	61.3926805449135	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATTTATTTATTATTATA	NA	False	NA	NA	False	AATAAA	-19	NA	47813212	47794288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_47794760_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
transcript_41525.known	chr17	-	2793	8	FSM	ENSMUSG00000023980.8	ENSMUST00000233121.2	2793	8	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	41.4984632122636	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACATAGGGCCTCTCAAAT	NA	False	NA	-4	True	AATAAA	-31	NA	47813212	47799206	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_47801208_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
transcript_41527.nnic	chr17	-	1217	8	NNC	ENSMUSG00000023980.8	novel	1692	7	NA	NA	-3	-385	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	70.9843328503134	134	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTACTATTCTGGTAGC	NA	False	NA	-9	True	AATAAA	-16	NA	47813220	47803973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_47804391_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
transcript_41528.known	chr17	-	1692	7	FSM	ENSMUSG00000023980.8	ENSMUST00000233274.2	1692	7	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_3	14.5535409971442	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAACAAACAAAAC	NA	False	NA	NA	False	TATAAA	-27	NA	47813214	47803588	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
transcript_41531.known	chr17	-	3854	7	FSM	ENSMUSG00000023988.9	ENSMUST00000024783.9	3854	7	0	0	0	0	multi-exon	FALSE	canonical	3	435	junction_6	15.1180539605981	261	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCTTAAGACCCCACAATC	2341	False	NA	-6	True	AATAAA	-17	NA	47922417	47910255	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_47912824_47913316_47913420_47913562_47913724_47914780_47914915_47915179_47915319_47917763_47917927_47921831
transcript_41534.known	chr17	+	1977	5	FSM	ENSMUSG00000034165.17	ENSMUST00000182209.8	1977	5	0	0	0	0	multi-exon	FALSE	canonical	3	3602	junction_2	267.432701814868	1461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTCTTGTGATCCCTG	NA	False	NA	NA	False	AATAAA	-15	NA	47904394	47910614	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_47904778_47905658_47905875_47908344_47908505_47908927_47909065_47909533
transcript_41537.nic	chr17	+	2007	5	NIC	ENSMUSG00000034165.17	novel	385	3	NA	NA	-320	0	combination_of_known_junctions	FALSE	canonical	3	110	junction_1	1687.74514885986	529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTCTTGTGATCCCTG	NA	False	NA	NA	False	AATAAA	-15	NA	47904917	47910614	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_47905331_47905658_47905875_47908344_47908505_47908927_47909065_47909533
transcript_41542.known	chr17	+	931	4	FSM	ENSMUSG00000034165.17	ENSMUST00000182539.8	931	4	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_1	1891.51068373051	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTCCAACCTTCTCAGTT	NA	False	NA	NA	False	NA	NA	NA	47906992	47910019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_47907141_47908344_47908505_47908927_47909065_47909533
transcript_41543.known	chr17	+	560	4	FSM	ENSMUSG00000034165.17	ENSMUST00000183256.8	560	4	0	0	0	0	multi-exon	FALSE	canonical	1	42	junction_1	1940.06534826937	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTAGCAGCCAGGGGCCCA	NA	False	NA	NA	False	NA	NA	NA	47907248	47909637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_47907408_47908344_47908505_47908927_47909065_47909533
transcript_41544.nnic	chr17	+	1515	4	NNC	ENSMUSG00000034165.17	novel	336	3	NA	NA	-123	0	at_least_one_novel_splicesite	FALSE	canonical	3	143	junction_1	1892.45349275014	448	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTCTTGTGATCCCTG	NA	False	NA	NA	False	AATAAA	-15	NA	47907965	47910614	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_47908103_47908344_47908505_47908927_47909065_47909533
transcript_4155.known	chr1	+	3408	12	FSM	ENSMUSG00000026455.15	ENSMUST00000027725.11	3408	12	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	24.9889231659096	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTGTTGGATTTATTGT	NA	False	NA	NA	False	NA	NA	NA	134383268	134418756	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_134383404_134386203_134386405_134391564_134391719_134395388_134395607_134400131_134400282_134403525_134403641_134411484_134411592_134413455_134413652_134414747_134414907_134415381_134415481_134416672_134416860_134417069
transcript_41550.known	chr17	+	3858	2	FSM	ENSMUSG00000034165.17	ENSMUST00000182281.2	3858	2	0	0	0	0	multi-exon	FALSE	canonical	3	3645	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	47904360	47909099	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_47904778_47905658
transcript_41551.known	chr17	+	2113	7	FSM	ENSMUSG00000034165.17	ENSMUST00000171031.8	2113	7	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	1830.80687281744	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAAGGTGGCTCTTGTGA	NA	False	NA	NA	False	AATAAA	-9	NA	47815975	47910608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_47816192_47889633_47889699_47904533_47904778_47905658_47905875_47908344_47908505_47908927_47909065_47909533
transcript_41552.known	chr17	+	1999	7	FSM	ENSMUSG00000034165.17	ENSMUST00000037333.17	1999	7	0	0	0	0	multi-exon	FALSE	canonical	2	40	junction_1	1813.81013951908	538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTCTTGTGATCCCTGGG	NA	False	NA	NA	False	AATAAA	-17	NA	47816052	47910616	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_47816192_47889633_47889699_47904578_47904778_47905658_47905875_47908344_47908505_47908927_47909065_47909533
transcript_41553.known	chr17	+	2144	7	FSM	ENSMUSG00000023266.12	ENSMUST00000113296.8	2144	7	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_5	11.8988794990677	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTGAGTGCTCTCGTCT	NA	False	NA	NA	False	AATATA	-19	NA	48006122	48015211	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_48006198_48008115_48008259_48009497_48009587_48010433_48010621_48012547_48012710_48013494_48013650_48013878
transcript_4156.known	chr1	+	3277	12	FSM	ENSMUSG00000026455.15	ENSMUST00000116528.2	3277	12	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	38.3780670833987	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTAAGAGAATTTGTGGG	NA	False	NA	17	True	ATTAAA	-18	NA	134383292	134418611	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_134383404_134386165_134386405_134391564_134391719_134395388_134395607_134400131_134400282_134403525_134403641_134411484_134411592_134413455_134413652_134414747_134414907_134415381_134415481_134416672_134416860_134417069
transcript_41562.known	chr17	+	1443	5	FSM	ENSMUSG00000090115.8	ENSMUST00000152724.2	1443	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	46.8794997840207	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGCTTCTATGAAGATCC	NA	False	NA	6	True	TATAAA	-3	NA	47983644	47991981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_47984344_47985640_47985846_47989768_47989878_47990588_47990644_47991606
transcript_4157.known	chr1	+	3220	12	FSM	ENSMUSG00000026455.15	ENSMUST00000112232.8	3220	12	0	0	0	0	multi-exon	TRUE	canonical	3	11	junction_10	55.1444384404184	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTAAGAGAATTTGTGGG	NA	False	NA	17	True	ATTAAA	-18	NA	134383268	134418611	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_134383404_134386165_134386405_134391564_134391719_134395388_134395607_134400131_134400282_134403525_134403641_134411484_134411592_134413455_134413652_134414747_134414907_134415381_134415481_134416753_134416860_134417069
transcript_41571.known	chr17	+	2054	4	FSM	ENSMUSG00000092558.4	ENSMUST00000024778.3	2054	4	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_2	32.2937902527543	888	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGCTGTAGTTGCCTTCTT	NA	False	NA	NA	False	CATAAA	-16	NA	47922506	47935343	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_47922618_47923887_47924043_47929733_47929988_47933809
transcript_41572.known	chr17	+	2168	4	FSM	ENSMUSG00000023984.18	ENSMUST00000130830.2	2168	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	105.093609066711	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTCTACTGCTTTTTATT	NA	False	NA	NA	False	AATAAA	-20	NA	47922522	47962538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_47922618_47923887_47924043_47929733_47929988_47960874
transcript_41579.known	chr17	+	480	4	FSM	ENSMUSG00000090115.8	ENSMUST00000131550.2	480	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	36.5786823163438	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGAAGTGTGCAAAACCCA	NA	False	NA	NA	False	NA	NA	NA	47984225	47991653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_47984344_47989768_47989878_47990588_47990795_47991606
transcript_41584.known	chr17	+	599	3	FSM	ENSMUSG00000023984.18	ENSMUST00000146105.8	599	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	122	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATAAATGTTTATTGTCCA	NA	False	NA	NA	False	AATAAA	-12	NA	47922513	47961214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_47922618_47923887_47924043_47960874
transcript_41599.known	chr17	-	490	2	FSM	ENSMUSG00000096549.10	ENSMUST00000151540.2	490	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAAGTGTGACCATGCACC	NA	False	NA	NA	False	ATTAAA	-16	NA	48005661	48003140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_48003405_48005435
transcript_41600.known	chr17	-	749	3	FSM	ENSMUSG00000033475.16	ENSMUST00000113302.10	749	3	0	0	0	0	multi-exon	FALSE	canonical	3	3748	junction_1	369	15822	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACTCAAGAGACAGGCATG	NA	False	NA	82	True	AATAAA	-16	NA	47999108	47997570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_47997934_47998112_47998214_47998823
transcript_41601.known	chr17	-	594	3	FSM	ENSMUSG00000033475.16	ENSMUST00000113301.2	594	3	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_1	2129.5	1625	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGTATTTTATTCTTTT	NA	False	NA	-12	True	AATAAA	-15	NA	47998993	47997664	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_47997988_47998112_47998214_47998823
transcript_41602.known	chr17	+	1388	9	FSM	ENSMUSG00000023987.15	ENSMUST00000024782.12	1388	9	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	162.479181358721	3758	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGCCTGTTGAGTCATTT	NA	False	NA	16	True	AATAAA	-16	NA	48037766	48045407	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_48037890_48039666_48039827_48040176_48040295_48041018_48041138_48041523_48041724_48043309_48043430_48043885_48044037_48044681_48044781_48045109
transcript_4161.known	chr1	+	3118	3	FSM	ENSMUSG00000026455.15	ENSMUST00000133721.8	3118	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	42	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAATAAAAATAAGTAAA	NA	False	NA	NA	False	NA	NA	NA	134383268	134394308	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_134383404_134386165_134386405_134391564
transcript_41625.known	chr17	+	2342	9	FSM	ENSMUSG00000023990.19	ENSMUST00000086932.10	2342	9	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_4	27.2370955683604	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTCCTGGCTCTGCGGT	NA	False	NA	18	True	AGTAAA	-18	NA	48047954	48103344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_48048242_48096889_48097122_48097202_48097458_48097855_48097937_48098950_48099072_48099161_48099219_48099833_48099910_48100585_48100734_48102259
transcript_41626.known	chr17	+	2328	9	FSM	ENSMUSG00000023990.19	ENSMUST00000113288.8	2328	9	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	151.923449062349	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTATGTTGTCCTGGCTCTG	NA	False	NA	14	True	AGTAAA	-14	NA	48048852	48103340	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_48049130_48096889_48097122_48097202_48097458_48097855_48097937_48098950_48099072_48099161_48099219_48099833_48099910_48100585_48100734_48102259
transcript_41627.nic	chr17	+	2358	9	NIC	ENSMUSG00000023990.19	novel	2296	8	NA	NA	760	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_1	141.519378090069	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTATGTTGTCCTGGCTCTGC	NA	False	NA	15	True	AGTAAA	-15	NA	48050587	48103341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_48050894_48096889_48097122_48097202_48097458_48097855_48097937_48098950_48099072_48099161_48099219_48099833_48099910_48100585_48100734_48102259
transcript_41629.known	chr17	-	1371	5	FSM	ENSMUSG00000032717.15	ENSMUST00000035375.14	1371	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	1.78535710713571	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCATCTCCCCAGGACTC	2092	False	NA	-10	True	AATAAA	-14	NA	48144216	48126260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_48127090_48131738_48131967_48135472_48135653_48143868_48143956_48144169
transcript_41633.known	chr17	+	513	2	FSM	ENSMUSG00000051682.16	ENSMUST00000153131.2	513	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGCTCTACCGAAGCCATCA	NA	False	NA	NA	False	NA	NA	NA	48579466	48581540	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_48579847_48581407
transcript_41636.known	chr17	-	1407	10	FSM	ENSMUSG00000023994.14	ENSMUST00000160319.8	1407	10	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_8	15.1053910742547	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACACTGACCTTTTGCAAA	NA	False	NA	-70	True	NA	NA	NA	48716758	48696108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699517_48700207_48700314_48700448_48700581_48702677_48702825_48706009_48706097_48707465_48707609_48716653
transcript_41637.known	chr17	-	3653	10	FSM	ENSMUSG00000023994.14	ENSMUST00000078800.13	3653	10	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_8	14.2837212013545	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGATTTTTGGTGTTTGTT	NA	False	NA	-4	True	AATAAA	-26	NA	48716793	48693912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699535_48700207_48700314_48700448_48700581_48702677_48702825_48706009_48706094_48707465_48707609_48716653
transcript_41638.known	chr17	-	3645	10	FSM	ENSMUSG00000023994.14	ENSMUST00000046719.14	3645	10	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_8	14.7832070227182	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAAGTGACTGGATTTT	NA	False	NA	-15	True	AATAAA	-15	NA	48716793	48693923	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699535_48700207_48700314_48700448_48700581_48702677_48702825_48706009_48706097_48707465_48707609_48716653
transcript_41644.known	chr17	-	3706	9	FSM	ENSMUSG00000023994.14	ENSMUST00000162460.8	3706	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	12.5492778676703	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTGGATTTTTGGTGTT	NA	False	NA	-8	True	AATAAA	-22	NA	48716934	48693916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699535_48700207_48700314_48700448_48700581_48702677_48702825_48707465_48707609_48716653
transcript_41645.known	chr17	-	640	3	FSM	ENSMUSG00000023994.14	ENSMUST00000160804.2	640	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	10	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCAGATGTTTTGAAGAAG	NA	False	NA	NA	False	NA	NA	NA	48716716	48702390	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_48702825_48707465_48707609_48716653
transcript_41649.known	chr17	+	1324	6	FSM	ENSMUSG00000040771.15	ENSMUST00000167180.8	1324	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	371.627232586634	2457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGGTTTGCACACATGA	NA	False	NA	9	True	AATAAA	-17	NA	48717041	48724282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_48717401_48717855_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
transcript_4165.known	chr1	+	2861	2	FSM	ENSMUSG00000042229.10	ENSMUST00000047978.9	2861	2	0	0	0	0	multi-exon	FALSE	canonical	3	479	junction_1	0	758	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGCTGGCGAGATGGCTCA	6638	False	NA	NA	False	ATTAAA	-13	NA	134422385	134436512	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_134422548_134433813
transcript_41667.known	chr17	+	1135	6	FSM	ENSMUSG00000040771.15	ENSMUST00000046651.7	1135	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	381.26547181721	1735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACATGAACGTCTGTGTTC	NA	False	NA	21	True	AATAAA	-29	NA	48717107	48724294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_48717266_48717855_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
transcript_41668.known	chr17	+	590	3	FSM	ENSMUSG00000040771.15	ENSMUST00000233426.2	590	3	0	0	0	0	multi-exon	FALSE	canonical	3	263	junction_1	344	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCCAGTCTCTTCGCCCT	NA	False	NA	NA	False	ACTAAA	-18	NA	48717119	48718658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_48717266_48717855_48717933_48718291
transcript_41671.known	chr17	-	317	2	FSM	ENSMUSG00000040694.5	ENSMUST00000233707.2	317	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTATTGCTCCAGGCCTG	NA	False	NA	NA	False	NA	NA	NA	48739646	48738530	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_48738708_48739506
transcript_41672.known	chr17	-	1420	3	FSM	ENSMUSG00000040694.5	ENSMUST00000046549.5	1420	3	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	11.5	581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGGCCTGTTCTCTTA	NA	False	NA	NA	False	AATAAA	-14	NA	48739958	48726258	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_48726662_48729968_48730534_48739506
transcript_41676.nnic	chr17	-	874	5	NIC	ENSMUSG00000023995.13	novel	956	5	NA	NA	-11	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	11.6404467268228	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGCCTGGTGTAAGGTGGA	NA	False	NA	-1	True	AATAAA	-19	NA	48758561	48755462	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_48755829_48756047_48756190_48756910_48757006_48757899_48758090_48758480
transcript_41678.nnic	chr17	-	918	5	NNC	ENSMUSG00000023995.13	novel	956	5	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	10.7819293264239	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGCCTGGTGTAAGGTGGA	NA	False	NA	-1	True	AATAAA	-19	NA	48758558	48755462	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_48755829_48756047_48756190_48756910_48757053_48757899_48758090_48758480
transcript_41679.nnic	chr17	-	1141	5	NIC	ENSMUSG00000023995.13	novel	956	5	NA	NA	-137	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_3	10.7819293264239	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGCCTGGTGTAAGGTGGA	NA	False	NA	-1	True	AATAAA	-19	NA	48758687	48755462	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_48755829_48756047_48756190_48756910_48757099_48757851_48758090_48758480
transcript_41681.known	chr17	-	956	5	FSM	ENSMUSG00000023995.13	ENSMUST00000024794.12	956	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	2.06155281280883	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGCCTGGTGTAAGGTGGA	NA	False	NA	-1	True	AATAAA	-19	NA	48758550	48755462	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_48755829_48756047_48756190_48756910_48757099_48757899_48758090_48758480
transcript_41685.known	chr17	+	2838	9	FSM	ENSMUSG00000043592.16	ENSMUST00000074574.13	2838	9	0	0	0	0	multi-exon	TRUE	canonical	1	5	junction_1	7.66383552798467	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGGTACTTTTGAATGGT	NA	False	NA	NA	False	AATAAA	-26	NA	48761928	48775714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_48762001_48766566_48767013_48767512_48767814_48769203_48769467_48770389_48770492_48770604_48770673_48771469_48771571_48771943_48772058_48774343
transcript_41691.known	chr17	+	1696	5	FSM	ENSMUSG00000043592.16	ENSMUST00000161418.8	1696	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	10.7092249953019	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAAAATACTGGTACTTT	NA	False	NA	NA	False	AATAAA	-18	NA	48769411	48775706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_48769467_48770389_48770492_48771508_48771571_48771943_48772058_48774343
transcript_41692.known	chr17	+	1786	5	FSM	ENSMUSG00000043592.16	ENSMUST00000161587.8	1786	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	10.7092249953019	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAATACTGGTACTTTTG	NA	False	NA	NA	False	AATAAA	-20	NA	48769362	48775708	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_48769467_48770389_48770492_48771469_48771571_48771943_48772058_48774343
transcript_41695.known	chr17	+	2646	11	FSM	ENSMUSG00000064120.15	ENSMUST00000024797.16	2646	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_10	7.06328535456412	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGATTGGGGACTCTTGT	NA	False	NA	6	True	AATAAA	-22	NA	49735391	49762460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_49735593_49740197_49740325_49742122_49742291_49746449_49746615_49756127_49756190_49756462_49756575_49756776_49756890_49757289_49757401_49759238_49759360_49759822_49759886_49761057
transcript_41696.known	chr17	+	729	4	FSM	ENSMUSG00000064120.15	ENSMUST00000165390.9	729	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	17.0163320241336	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTTGCTTTTGGTCATA	NA	False	NA	NA	False	NA	NA	NA	49735389	49744969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_49735593_49740197_49740325_49742122_49742291_49744738
transcript_41697.known	chr17	+	2588	11	FSM	ENSMUSG00000064120.15	ENSMUST00000173033.8	2588	11	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_10	9.4387499172295	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATTGGGGACTCTTGTCTG	NA	False	NA	9	True	AATAAA	-25	NA	49735437	49762463	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_49735593_49740197_49740325_49742122_49742291_49746449_49746615_49756127_49756190_49756462_49756575_49756776_49756890_49757289_49757401_49759238_49759360_49759822_49759871_49761057
transcript_41701.known	chr17	-	4029	10	FSM	ENSMUSG00000039316.15	ENSMUST00000044503.14	4029	10	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_4	9.91071249821234	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATATATTTTTCTTTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	50497702	50299284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_50301510_50309659_50309742_50311281_50311386_50343968_50344085_50354324_50354529_50362264_50362656_50393595_50393705_50414097_50414285_50476030_50476188_50497248
transcript_41702.nnic	chr17	-	1546	4	NNC	ENSMUSG00000039316.15	novel	2385	8	NA	NA	67744	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	40.4337592722825	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTGTGGTGAGAAGTATT	NA	False	NA	-28	True	AATAAA	-13	NA	50333616	50300287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_50301510_50309659_50309742_50311281_50311386_50333478
transcript_41703.known	chr17	-	2976	11	FSM	ENSMUSG00000010592.10	ENSMUST00000010736.9	2976	11	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_4	74.6324996231534	520	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCACTGACTTACTGTCC	NA	False	NA	-5	True	AATAAA	-16	NA	50600664	50586424	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_50588340_50590155_50590255_50591265_50591380_50592023_50592075_50593278_50593351_50594555_50594696_50594782_50594847_50595138_50595191_50595641_50595734_50596119_50596267_50600434
transcript_41704.known	chr17	+	4185	6	FSM	ENSMUSG00000038910.8	ENSMUST00000043938.8	4185	6	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	9.88736567544662	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAATAGCAGTACATGCTT	NA	False	NA	NA	False	ATTAAA	-21	NA	50816430	50995512	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_50816966_50913322_50915810_50918019_50918224_50947143_50947220_50975026_50975137_50994739
transcript_41705.nnic	chr17	+	787	2	NNC	ENSMUSG00000038910.8	novel	4185	6	NA	NA	-1147	-105654	at_least_one_novel_splicesite	FALSE	canonical	2	17	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAGAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	50815283	50816487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_50815976_50816392
transcript_41706.nnic	chr17	-	1811	16	NNC	ENSMUSG00000023923.11	novel	2508	14	NA	NA	5	33917	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	7.80996514432398	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATGTGATTTTTGTTCAT	NA	False	NA	NA	False	AGTAAA	-21	NA	51486375	51146547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_51146769_51159560_51159668_51181593_51181737_51224554_51224728_51226019_51226090_51226189_51226241_51227542_51227632_51242483_51242587_51270720_51270789_51273579_51273655_51273743_51273834_51275217_51275327_51291632_51291703_51332101_51332233_51450386_51450450_51486127
transcript_41708.known	chr17	-	2131	13	FSM	ENSMUSG00000023923.11	ENSMUST00000223758.2	2131	13	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_3	4.29793231940921	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51486363	51223751	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_51224728_51226019_51226090_51226189_51226241_51227542_51227632_51242483_51242587_51270720_51270789_51273579_51273655_51273743_51273834_51275217_51275327_51291632_51291703_51332101_51332233_51450386_51450450_51486127
transcript_41710.known	chr17	-	3461	11	FSM	ENSMUSG00000023927.16	ENSMUST00000133574.8	3461	11	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_10	19.2429207762231	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATGTTTGCAATGTGTCT	NA	False	NA	NA	False	AATAGA	-37	NA	52140318	52045921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_52047442_52049673_52049878_52074919_52075076_52082233_52082447_52089639_52090095_52092556_52092669_52110458_52110583_52111341_52111469_52112224_52112402_52116070_52116316_52140190
transcript_41712.known	chr17	-	2661	13	FSM	ENSMUSG00000023931.6	ENSMUST00000024725.5	2661	13	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_1	9.14998482087387	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGTCCTGGTTTTGCTG	NA	False	NA	-4	True	ATTAAA	-14	NA	53770349	53705916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_53706148_53707773_53707956_53708462_53708676_53720490_53720699_53728902_53729058_53733239_53733308_53733937_53734022_53744111_53744242_53752772_53752884_53756412_53756594_53758578_53758723_53759588_53759652_53769458
transcript_41718.nnic	chr17	+	2174	6	NNC	ENSMUSG00000017831.9	novel	2366	6	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	370.3029030402	442	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGAGTTTTCTCTGTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	53786245	53814708	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_53786442_53790861_53791104_53804554_53804707_53805415_53805539_53807403_53807498_53813341
transcript_41719.known	chr17	+	2366	6	FSM	ENSMUSG00000017831.9	ENSMUST00000017975.7	2366	6	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_1	72.5131712173726	451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGAGTTTTCTCTGTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	53786261	53814708	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_53786637_53790848_53791104_53804554_53804707_53805415_53805539_53807403_53807498_53813341
transcript_4172.nnic	chr1	+	745	5	Antisense	novelGene_ENSMUSG00000046367.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	1.92028643696715	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGGCAGTGGTGGCTAAC	56	False	NA	NA	False	AATAAA	-14	NA	134455600	134475292	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr1_+_134455766_134457865_134457970_134474546_134474668_134474818_134474934_134475052
transcript_41720.known	chr17	+	4653	18	FSM	ENSMUSG00000000708.15	ENSMUST00000000724.15	4653	18	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_6	30.0116471047111	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGTGTTATGTTTTAT	NA	False	NA	19	True	AATATA	-45	NA	53873998	53979748	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_53874607_53917891_53918019_53931379_53931526_53936351_53936445_53939564_53939747_53945379_53945572_53948220_53948328_53951641_53951765_53955774_53955912_53960049_53960259_53961466_53961594_53966345_53966457_53967056_53967201_53970562_53970678_53972433_53972471_53972680_53972745_53972850_53972936_53977702
transcript_41732.known	chr17	-	382	3	FSM	ENSMUSG00000023940.15	ENSMUST00000146019.2	382	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	144.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAATTTTGTGTTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	53996306	53994734	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_53994887_53995017_53995149_53996207
transcript_41733.known	chr17	-	3628	9	FSM	ENSMUSG00000023940.15	ENSMUST00000024736.14	3628	9	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_7	54.3666660279992	688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTTGCCGCTTACTTTT	NA	False	NA	0	True	AATAAA	-30	NA	53996361	53981813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_53983740_53983934_53984125_53985937_53986730_53988472_53988517_53990581_53990659_53994111_53994309_53994738_53994887_53995017_53995149_53996238
transcript_41734.known	chr17	-	3523	17	FSM	ENSMUSG00000024174.10	ENSMUST00000086876.7	3523	17	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	6.91804705101086	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATTAATAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	56019578	55958950	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_55960519_55961766_55961873_55969462_55969555_55971316_55971406_55972647_55972784_55973411_55973618_55976739_55976897_55979830_55979894_55981051_55981141_55994788_55994959_55999721_55999878_56002026_56002318_56005456_56005588_56006991_56007107_56013105_56013153_56017838_56017907_56019539
transcript_41737.nic	chr17	-	672	6	ISM	ENSMUSG00000024174.10	ENSMUST00000233557.2	663	7	-44	3174	-23	-1253	5prime_fragment	TRUE	canonical	1	4	junction_4	7.56306816047562	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGTCAGGCATCAATTAT	NA	False	NA	NA	False	ATTAAA	-23	NA	56019651	56005346	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_-_56005588_56006991_56007107_56013105_56013153_56015997_56016087_56017838_56017907_56019539
transcript_41738.known	chr17	-	1813	5	FSM	ENSMUSG00000024174.10	ENSMUST00000233301.2	1813	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	2.54950975679639	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATTAAAAAAAAATGAATA	NA	False	NA	NA	False	NA	NA	NA	56019628	56004093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_56005588_56006991_56007107_56013105_56013153_56017838_56017907_56019539
transcript_41739.nnic	chr17	-	2237	4	NNC	ENSMUSG00000057835.8	novel	2018	4	NA	NA	227	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_3	9.67241208569794	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCATTCTCTTGGATAGC	NA	False	NA	NA	False	AATAAA	-16	NA	56185703	56171891	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_56173651_56175302_56175364_56175558_56175686_56185413
transcript_41740.known	chr17	-	2018	4	FSM	ENSMUSG00000057835.8	ENSMUST00000079642.8	2018	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	5.43650214343336	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCATTCTCTTGGATAGC	NA	False	NA	NA	False	AATAAA	-16	NA	56185930	56171891	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_56173651_56175302_56175364_56175558_56175686_56185859
transcript_41741.known	chr17	+	895	5	FSM	ENSMUSG00000003198.11	ENSMUST00000224379.2	895	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	13.1624465810882	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATCATGAAGATAAACTCA	NA	False	NA	NA	False	NA	NA	NA	56199092	56204665	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_56199187_56199757_56199861_56202820_56202948_56203140_56203202_56204155
transcript_41742.nnic	chr17	+	2330	5	NNC	ENSMUSG00000003198.11	novel	705	4	NA	NA	-101	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	13.1624465810882	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTATATTTATGTGTCT	NA	False	NA	NA	False	AATAAA	-13	NA	56199366	56205928	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_56199633_56199757_56199861_56202820_56202948_56203140_56203202_56204155
transcript_41743.known	chr17	+	2028	4	FSM	ENSMUSG00000003198.11	ENSMUST00000054780.10	2028	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	17.3781471969828	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTATATTTATGTGTCT	NA	False	NA	NA	False	AATAAA	-13	NA	56199119	56205928	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_56199187_56202820_56202948_56203140_56203202_56204155
transcript_41746.nnic	chr17	-	735	5	Intergenic	novelGene_63	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0.433012701892219	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTCTCTCAAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	56239203	56212634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr17_-_56212981_56213124_56213225_56213311_56213401_56217565_56217675_56239112
transcript_41749.known	chr17	-	1889	4	FSM	ENSMUSG00000062101.13	ENSMUST00000056147.14	1889	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	5.90668171555645	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAATATTTATGTTGT	NA	False	NA	NA	False	AATAAA	-12	NA	56252259	56245380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_56246994_56247928_56247990_56248185_56248313_56252171
transcript_41750.known	chr17	-	2078	4	FSM	ENSMUSG00000062101.13	ENSMUST00000189452.2	2078	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	17.6823829464998	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAATATTTATGTTGT	NA	False	NA	NA	False	AATAAA	-12	NA	56256500	56245380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_56246994_56247928_56247990_56248185_56248313_56256223
transcript_41754.nnic	chr17	+	1730	8	NNC	ENSMUSG00000003208.10	novel	1660	8	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	canonical	2	28	junction_2	40.3591023544521	84	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCGTGTTGGAGTCTGCT	245	False	NA	8	True	NA	NA	NA	56266074	56275285	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_56266262_56267712_56267785_56269018_56269164_56271129_56271265_56271485_56271668_56272168_56272290_56273507_56273638_56274527
transcript_41755.known	chr17	+	1660	8	FSM	ENSMUSG00000003208.10	ENSMUST00000086869.6	1660	8	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_5	8.99205998963212	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCGTGTTGGAGTCTGCT	344	False	NA	8	True	NA	NA	NA	56266173	56275285	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_56266262_56267712_56267814_56269018_56269164_56271129_56271265_56271485_56271668_56272168_56272290_56273507_56273638_56274527
transcript_41758.nic	chr17	+	1155	6	ISM	ENSMUSG00000003208.10	ENSMUST00000233661.2	1601	7	-24	2708	-24	-2708	5prime_fragment	FALSE	canonical	3	126	junction_5	10.2254584249314	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGGGGAGTCAGAGTCGG	245	False	NA	NA	False	NA	NA	NA	56266074	56272573	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_56266262_56267712_56267814_56269018_56269164_56271129_56271265_56271485_56271668_56272168
transcript_4176.nnic	chr1	+	618	4	Antisense	novelGene_ENSMUSG00000046367.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	2.16024689946929	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGGCAGTGGTGGCTAAC	79	False	NA	NA	False	AATAAA	-14	NA	134455623	134475292	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr1_+_134455766_134474546_134474668_134474818_134474934_134475052
transcript_41762.nnic	chr17	+	928	3	NNC	ENSMUSG00000003208.10	novel	1601	7	NA	NA	-14	42	at_least_one_novel_splicesite	FALSE	canonical	2	28	junction_2	61.5	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCCGGGCAGTGGTGGCG	328	False	NA	NA	False	NA	NA	NA	56266157	56269770	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_56266262_56267712_56267785_56269018
transcript_41763.nic	chr17	+	1015	3	ISM	ENSMUSG00000003208.10	ENSMUST00000233661.2	1601	7	-24	5536	-24	17	5prime_fragment	FALSE	canonical	3	151	junction_1	1.5	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAGGATTTGGAAAAAAAAAA	245	False	NA	NA	False	NA	NA	NA	56266074	56269745	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_56266262_56267712_56267814_56269018
transcript_41764.known	chr17	+	526	2	FSM	ENSMUSG00000003208.10	ENSMUST00000233226.2	526	2	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGATGGAGAAGCTGTCCGT	394	False	NA	NA	False	NA	NA	NA	56266223	56268200	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_56266262_56267712
transcript_41765.known	chr17	-	1960	3	FSM	ENSMUSG00000097077.2	ENSMUST00000181962.2	1960	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTGGCTTTCATCCTCT	4875	False	NA	NA	False	NA	NA	NA	56266381	56261770	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_56263368_56263861_56263977_56266133
transcript_41766.known	chr17	+	1154	5	FSM	ENSMUSG00000003206.8	ENSMUST00000003274.8	1154	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.433012701892219	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGTGGTGTTTTGTTTTGTT	2820	False	NA	NA	False	ATTAAA	-16	NA	56259639	56264022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_56259929_56260888_56261019_56261302_56261482_56263184_56263340_56263621
transcript_41767.known	chr17	+	1748	13	FSM	ENSMUSG00000011589.10	ENSMUST00000011733.9	1748	13	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_12	6.07533721057706	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCTGCACTGGTTCTT	3933	False	NA	6	True	AATAAA	-16	NA	56293510	56303881	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_56293654_56294742_56294839_56295123_56295256_56295673_56295776_56297211_56297235_56297418_56297541_56298166_56298377_56300842_56300942_56302356_56302517_56302857_56302938_56303071_56303324_56303420_56303510_56303641
transcript_41772.known	chr17	-	1509	13	FSM	ENSMUSG00000038781.8	ENSMUST00000043785.8	1509	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_8	11.0839598820398	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATGTGGCTGTAGGATT	NA	False	NA	-4	True	NA	NA	NA	56312584	56304076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_56304362_56304459_56304535_56304604_56304698_56304777_56304952_56306742_56306809_56306912_56307016_56307086_56307157_56307479_56307615_56307900_56308002_56309011_56309069_56309852_56309976_56310129_56310202_56312429
transcript_41774.known	chr17	-	1597	12	FSM	ENSMUSG00000038781.8	ENSMUST00000233494.2	1597	12	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_7	11.576550821623	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGCCATGTGGCTGTA	NA	False	NA	-9	True	NA	NA	NA	56312573	56304081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_56304362_56304459_56304535_56304604_56304698_56304777_56304952_56306742_56307016_56307086_56307157_56307479_56307615_56307900_56308002_56309011_56309069_56309852_56309976_56310129_56310202_56312429
transcript_41783.nnic	chr17	-	818	5	NIC	ENSMUSG00000038781.8	novel	1509	13	NA	NA	-1797	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_4	10.8972473588517	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATGTGGCTGTAGGATT	NA	False	NA	-4	True	NA	NA	NA	56307277	56304076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_56304362_56304459_56304535_56304604_56304698_56304777_56304952_56307086
transcript_41787.known	chr17	+	1701	13	FSM	ENSMUSG00000003199.17	ENSMUST00000149441.8	1701	13	0	0	0	0	multi-exon	FALSE	canonical	3	665	junction_1	98.0428973573416	666	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGAGTACAGTTCATTTC	NA	False	NA	146	True	TTTAAA	-7	NA	56316200	56323790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_56316257_56316329_56316587_56317276_56317514_56317987_56318112_56318617_56318700_56318865_56318963_56319270_56319344_56319415_56319493_56321940_56322110_56322207_56322279_56322470_56322561_56322903_56322997_56323515
transcript_41791.known	chr17	-	2073	10	FSM	ENSMUSG00000003200.11	ENSMUST00000003268.11	2073	10	0	0	0	0	multi-exon	FALSE	canonical	3	585	junction_1	54.5914116159513	678	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGTCCCATCTTCATT	NA	False	NA	-1	True	ATTAAA	-17	NA	56343635	56323749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_56324737_56324843_56324901_56324982_56325108_56325574_56325679_56325803_56325963_56326039_56326174_56326315_56326460_56326925_56326999_56327122_56327192_56343414
transcript_41792.known	chr17	+	5535	14	FSM	ENSMUSG00000002835.10	ENSMUST00000002914.10	5535	14	0	0	0	0	multi-exon	TRUE	canonical	3	392	junction_3	50.5723455079702	163	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAAGATGAGTGAGGA	NA	False	NA	NA	False	ATTAAA	-11	NA	56347438	56377276	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_56347552_56351061_56351113_56353822_56354635_56363420_56363478_56364717_56364921_56365983_56366066_56366257_56366327_56369084_56369312_56369550_56369720_56369810_56369892_56370327_56370421_56371000_56371257_56371973_56372426_56374406
transcript_41802.known	chr17	+	2238	16	FSM	ENSMUSG00000002833.12	ENSMUST00000225843.2	2238	16	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_6	179.285421108974	1466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAACAGCTTTTATTGG	NA	False	NA	NA	False	TATAAA	-16	NA	56386698	56407598	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403820_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
transcript_41804.known	chr17	+	2270	16	FSM	ENSMUSG00000002833.12	ENSMUST00000226053.2	2270	16	0	0	0	0	multi-exon	FALSE	canonical	3	507	junction_6	104.875926694356	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATGAAAAAGAAACAGCTTT	NA	False	NA	NA	False	TATAAA	-10	NA	56386633	56407592	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403847_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
transcript_41805.known	chr17	+	2264	16	FSM	ENSMUSG00000002833.12	ENSMUST00000002911.10	2264	16	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_6	225.638196136105	839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAAACAGCTTTTATT	NA	False	NA	NA	False	TATAAA	-14	NA	56386637	56407596	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403850_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407347
transcript_41812.known	chr17	-	1986	9	FSM	ENSMUSG00000011305.12	ENSMUST00000019808.12	1986	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	3.19912097301743	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGGTTTTGGAACTTGGG	9995	False	NA	NA	False	AATAAA	-20	NA	56424596	56418600	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_56419542_56419869_56419984_56420898_56421099_56422092_56422274_56422550_56422634_56423257_56423454_56423828_56423890_56424082_56424198_56424501
transcript_41814.nic	chr17	-	1310	8	ISM	ENSMUSG00000011305.12	ENSMUST00000019808.12	1986	9	9	995	9	-989	5prime_fragment	FALSE	canonical	2	7	junction_2	3.09047252182628	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGGCCAAGGCTCTTGTT	1102	False	NA	NA	False	ATTAAA	-17	NA	56424587	56419595	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_-_56419984_56420898_56421099_56422092_56422274_56422550_56422634_56423257_56423454_56423828_56423890_56424082_56424198_56424501
transcript_41816.known	chr17	+	2379	2	FSM	ENSMUSG00000044469.9	ENSMUST00000077788.7	2379	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCCTGGCTGTCCTGGA	413	False	NA	NA	False	NA	NA	NA	56469476	56480955	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_56469607_56478706
transcript_41821.known	chr17	-	1710	6	FSM	ENSMUSG00000019579.14	ENSMUST00000019723.8	1710	6	0	0	0	0	multi-exon	FALSE	canonical	3	1137	junction_1	57.4505004329814	2758	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAACCACCTGAAGCCA	NA	False	NA	-29	True	NA	NA	NA	56490920	56482743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_56484004_56484698_56484772_56485263_56485346_56486363_56486426_56489664_56489716_56490738
transcript_41823.known	chr17	-	3374	21	FSM	ENSMUSG00000001229.10	ENSMUST00000038794.6	3374	21	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_20	12.6925174807837	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAGAAGTAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	56525889	56493816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_56494462_56495267_56495380_56496322_56496466_56496989_56497143_56497684_56497832_56498013_56498160_56501415_56501552_56501907_56502061_56503087_56503168_56505971_56506135_56506255_56506434_56507582_56507684_56509840_56509903_56511171_56511301_56512193_56512308_56512452_56512622_56512696_56512871_56513776_56513890_56518579_56518834_56524408_56524462_56525740
transcript_41824.known	chr17	-	2992	2	FSM	ENSMUSG00000047123.9	ENSMUST00000058136.9	2992	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTTAGGCTACGGCACT	813	False	NA	NA	False	AATATA	-14	NA	56583786	56576318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_56579218_56583693
transcript_41825.known	chr17	-	3645	8	FSM	ENSMUSG00000024197.11	ENSMUST00000019726.8	3645	8	0	0	0	0	multi-exon	TRUE	canonical	3	548	junction_7	40.8821102534533	578	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCTGTAATCTCACCATC	NA	False	NA	NA	False	NA	NA	NA	56597511	56584475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_56587074_56587741_56587868_56588406_56588607_56591132_56591431_56593212_56593296_56593447_56593647_56594793_56594877_56597453
transcript_41826.known	chr17	-	721	3	FSM	ENSMUSG00000073380.3	ENSMUST00000233911.2	721	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	4.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTAGTGCCTTCAACCT	2730	False	NA	NA	False	NA	NA	NA	56607266	56601367	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_56601665_56604826_56604975_56606990
transcript_41827.known	chr17	-	1056	3	FSM	ENSMUSG00000073380.3	ENSMUST00000097303.3	1056	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	4	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGAGTTGTCTGCTGGGC	2710	False	NA	NA	False	ATTAAA	-20	NA	56607286	56601110	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_56601665_56604826_56605033_56606990
transcript_41829.known	chr17	+	3586	17	FSM	ENSMUSG00000001228.15	ENSMUST00000001258.15	3586	17	0	0	0	0	multi-exon	TRUE	canonical	3	1413	junction_6	319.856779473251	549	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	420	False	NA	36	True	AATAAA	-20	NA	56610320	56630486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
transcript_41831.known	chr17	+	3483	17	FSM	ENSMUSG00000001228.15	ENSMUST00000113038.8	3483	17	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_6	505.023262923353	504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	499	False	NA	36	True	AATAAA	-20	NA	56610399	56630486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
transcript_41833.known	chr17	+	3391	17	FSM	ENSMUSG00000001228.15	ENSMUST00000113039.9	3391	17	0	0	0	0	multi-exon	FALSE	canonical	3	638	junction_1	450.210766613816	518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	1447	False	NA	36	True	AATAAA	-20	NA	56611347	56630486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_56611394_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
transcript_41835.known	chr17	+	3402	17	FSM	ENSMUSG00000001228.15	ENSMUST00000113035.8	3402	17	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_6	590.514232338011	494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	1412	False	NA	36	True	AATAAA	-20	NA	56611312	56630486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_56611394_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
transcript_4184.known	chr1	+	1046	7	FSM	ENSMUSG00000026429.10	ENSMUST00000223886.2	1046	7	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	296.986531681152	409	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATAATACTTAATGTTA	NA	False	NA	-6	True	TTTAAA	-9	NA	134890355	134901879	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_134890525_134895464_134895641_134896978_134897049_134898987_134899094_134899638_134899738_134899843_134899928_134901537
transcript_41842.known	chr17	-	3277	21	FSM	ENSMUSG00000042625.17	ENSMUST00000075510.12	3277	21	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_15	52.6718852899723	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTCTGCTGCCAGGCATT	NA	False	NA	2	True	AATAAA	-31	NA	56891585	56869938	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_56870244_56870361_56870432_56870511_56870625_56871503_56871635_56872218_56872262_56872944_56873083_56873325_56873617_56873878_56874016_56874532_56874625_56875894_56876023_56878209_56878320_56878399_56878550_56881201_56881303_56881902_56881953_56882354_56883013_56883877_56883906_56884842_56884906_56885640_56885845_56885920_56885986_56889983_56890072_56891273
transcript_41845.known	chr17	-	1804	12	FSM	ENSMUSG00000042625.17	ENSMUST00000133604.8	1804	12	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_8	46.732047863545	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGAGGAGAAAGGGCCA	NA	False	NA	NA	False	AAGAAA	-10	NA	56891524	56875990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_56876023_56878209_56878320_56878399_56878550_56881201_56881303_56881902_56881953_56882354_56883013_56883877_56883906_56884842_56884906_56885636_56885845_56885920_56885986_56889983_56890072_56891273
transcript_41850.known	chr17	+	3106	21	FSM	ENSMUSG00000071054.13	ENSMUST00000095224.11	3106	21	0	0	0	0	multi-exon	TRUE	canonical	3	422	junction_6	66.4862955803675	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGACTTTCAACCTCTC	8062	False	NA	35	True	AATAAA	-26	NA	56892058	56913294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_56892351_56895781_56895867_56900689_56900755_56900834_56901042_56902651_56902715_56904787_56904816_56905643_56906221_56906622_56906673_56907337_56907433_56907821_56907972_56908047_56908131_56908226_56908367_56908442_56908532_56909876_56909984_56910531_56910823_56911145_56911284_56911365_56911409_56912283_56912400_56912556_56912658_56912796_56912864_56912975
transcript_41856.known	chr17	+	423	2	FSM	ENSMUSG00000071054.13	ENSMUST00000183318.2	423	2	0	0	0	0	multi-exon	FALSE	canonical	3	651	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTTTAAGTGCCCTTTA	NA	False	NA	15	True	AATAAA	-6	NA	56912739	56913274	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_56912864_56912975
transcript_41857.known	chr17	+	1755	5	FSM	ENSMUSG00000071054.13	ENSMUST00000182031.2	1755	5	0	0	0	0	multi-exon	FALSE	canonical	3	503	junction_2	23.466731770743	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGAGCACTAAGGAGTGAG	7828	False	NA	31	True	NA	NA	NA	56891824	56903523	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_56892351_56895781_56895867_56900689_56900755_56900834_56901042_56902651
transcript_41858.known	chr17	+	342	4	FSM	ENSMUSG00000071054.13	ENSMUST00000182800.8	342	4	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	202.046749265829	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACGGGCTCGAGGAGAATT	7985	False	NA	NA	False	NA	NA	NA	56891981	56900720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_56892044_56892186_56892351_56895781_56895867_56900689
transcript_41870.known	chr17	-	788	4	FSM	ENSMUSG00000049760.7	ENSMUST00000233299.2	788	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	987.838493322106	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTTGGGAATGGTCCCCA	NA	False	NA	-42	True	AATAAA	-1	NA	56916680	56914636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_56914842_56915637_56915693_56915845_56916333_56916639
transcript_41874.known	chr17	-	755	4	FSM	ENSMUSG00000049760.7	ENSMUST00000052832.6	755	4	0	0	0	0	multi-exon	FALSE	canonical	3	1891	junction_3	98.6610358753647	7617	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGTAGCTTGGATAGGAA	NA	False	NA	-32	True	TTTAAA	-27	NA	56916771	56914451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_56914842_56915637_56915693_56915845_56916024_56916639
transcript_41875.known	chr17	-	497	4	FSM	ENSMUSG00000049760.7	ENSMUST00000233103.2	497	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	986.424632476073	2177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGCCGGTTTTCTGGTGGG	NA	False	NA	-25	True	AATAAA	-18	NA	56916198	56914619	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_56914842_56915637_56915693_56915845_56916024_56916156
transcript_41880.known	chr17	+	383	4	FSM	ENSMUSG00000057863.7	ENSMUST00000080492.7	383	4	0	0	0	0	multi-exon	FALSE	canonical	3	5436	junction_1	2487.77200634535	46985	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTTTGTGTATGTGTGA	NA	False	NA	-1	True	AATAAA	-12	NA	56920415	56921243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_56920449_56920585_56920681_56920906_56921042_56921123
transcript_41895.known	chr17	+	2567	17	FSM	ENSMUSG00000002372.10	ENSMUST00000233319.2	2567	17	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_2	111.513574706176	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAGACTCTTTTGCACC	NA	False	NA	NA	False	ATTAAA	-14	NA	56980364	57018764	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_56980412_56993005_56993062_56999520_56999722_57003601_57003639_57003717_57003790_57008022_57008089_57008448_57008542_57009762_57009891_57012456_57012571_57013861_57013966_57014162_57014239_57014850_57014954_57015170_57015281_57016213_57016335_57017087_57017231_57017590_57017778_57017855
transcript_41898.known	chr17	+	2373	16	FSM	ENSMUSG00000002372.10	ENSMUST00000002445.10	2373	16	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_2	28.8962896503263	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAGACTCTTTTGCACC	NA	False	NA	NA	False	ATTAAA	-14	NA	56980357	57018764	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_56980412_56993005_56993062_57003601_57003639_57003717_57003790_57008022_57008089_57008448_57008542_57009762_57009891_57012456_57012571_57013861_57013966_57014162_57014239_57014850_57014954_57015170_57015281_57016213_57016335_57017087_57017231_57017590_57017778_57017855
transcript_41905.known	chr17	+	376	4	FSM	ENSMUSG00000002379.8	ENSMUST00000233457.2	376	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	1255.16807196841	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCAATGTCTTAAAGGCA	NA	False	NA	16	True	AATAAA	-16	NA	57024786	57029135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_57024838_57028076_57028128_57028318_57028442_57028984
transcript_41916.known	chr17	-	2226	2	FSM	ENSMUSG00000054723.7	ENSMUST00000067931.7	2226	2	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGACTCTACCTTTTTTC	7568	False	NA	-6	True	AATAAA	-16	NA	57023977	57020935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_57022818_57023633
transcript_41917.known	chr17	-	1965	2	FSM	ENSMUSG00000054723.7	ENSMUST00000164907.3	1965	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGACTCTACCTTTTTTC	6865	False	NA	-6	True	AATAAA	-16	NA	57024680	57020935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_57022818_57024597
transcript_41918.known	chr17	-	345	2	FSM	ENSMUSG00000054723.7	ENSMUST00000233400.2	345	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCCGGCCAGCCACAGCC	6523	False	NA	NA	False	NA	NA	NA	57025022	57022622	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_57022818_57024872
transcript_41919.known	chr17	+	545	4	FSM	ENSMUSG00000002379.8	ENSMUST00000002452.8	545	4	0	0	0	0	multi-exon	FALSE	canonical	3	2627	junction_1	54.2975342186201	37580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAATGTCTTAAAGGCAGG	NA	False	NA	18	True	AATAAA	-18	NA	57024766	57029137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_57024943_57028034_57028128_57028318_57028442_57028984
transcript_41920.known	chr17	+	493	4	FSM	ENSMUSG00000002379.8	ENSMUST00000233832.2	493	4	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_2	1185.6477835625	1927	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCTTAAAGGCAGGCTTG	NA	False	NA	22	True	AATAAA	-22	NA	57024782	57029141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_57024943_57028034_57028128_57028358_57028442_57028984
transcript_41921.known	chr17	+	918	3	FSM	ENSMUSG00000002379.8	ENSMUST00000233233.2	918	3	0	0	0	0	multi-exon	FALSE	canonical	3	2627	junction_1	33.5	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCAGCCATGGGCTGTGT	NA	False	NA	NA	False	NA	NA	NA	57024797	57028998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_57024943_57028034_57028128_57028318
transcript_41926.known	chr17	+	2025	13	FSM	ENSMUSG00000007603.10	ENSMUST00000007747.10	2025	13	0	0	0	0	multi-exon	TRUE	canonical	3	220	junction_6	33.8230690505755	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTTTATTTTGTTGGTT	9244	False	NA	16	True	AATAAA	-17	NA	57071777	57076841	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_57071942_57072524_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075151_57075347_57075414_57075517_57075629_57075805_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
transcript_4194.known	chr1	-	6108	37	FSM	ENSMUSG00000097993.8	ENSMUST00000183317.8	6108	37	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_36	4.29793231940921	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGTTGTGTCTGCTTCTGC	NA	False	NA	-1	True	AATAAA	-18	NA	135060332	135036235	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_135036434_135036656_135036793_135037023_135037188_135037300_135037418_135037546_135037676_135037822_135037900_135037989_135038069_135038150_135038239_135038387_135038456_135038783_135038920_135039039_135039201_135039927_135040051_135040627_135040763_135041847_135041925_135042038_135042130_135042279_135042374_135044121_135044170_135044256_135044384_135045851_135045920_135046399_135046611_135046966_135047108_135047403_135047686_135047994_135048262_135048439_135048704_135050069_135050343_135051276_135051553_135051685_135051932_135052032_135052288_135052980_135053245_135053442_135053713_135053873_135054147_135054314_135054364_135054753_135054821_135055774_135055852_135056391_135056460_135056854_135057489_135060257
transcript_4195.nic	chr1	-	912	6	ISM	ENSMUSG00000097993.8	ENSMUST00000183317.8	6108	37	22343	-1	213	0	3prime_fragment	FALSE	canonical	3	8	junction_5	3.5213633723318	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTGTGTCTGCTTCTGCA	NA	False	NA	0	True	AATAAA	-19	NA	135037989	135036234	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_135036434_135036656_135036793_135037023_135037188_135037300_135037418_135037546_135037676_135037822
transcript_41963.known	chr17	+	2749	10	FSM	ENSMUSG00000007603.10	ENSMUST00000233549.2	2749	10	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_2	26.7830792354676	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTGGCTCTCCTTGTGA	9250	False	NA	12	True	NA	NA	NA	57071783	57077093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_57071942_57072524_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
transcript_41967.nic	chr17	-	599	4	ISM	ENSMUSG00000024206.16	ENSMUST00000233643.2	4141	5	-101	4229	-27	-4229	5prime_fragment	FALSE	canonical	3	258	junction_2	15.2970585407784	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCATAGGCCCCTGAGAGTG	NA	False	NA	-1	True	AATAAA	-14	NA	57138040	57111137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_-_57111397_57112357_57112448_57115233_57115326_57137882
transcript_41969.known	chr17	-	3283	17	FSM	ENSMUSG00000024206.16	ENSMUST00000086801.7	3283	17	0	0	0	0	multi-exon	TRUE	canonical	3	178	junction_12	29.2883695986991	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGTGTCCGTGTTTGTTC	NA	False	NA	-1	True	NA	NA	NA	57138013	57082896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_57084075_57084431_57084475_57084838_57084993_57086879_57087089_57087754_57087905_57089250_57089349_57090606_57090762_57091299_57091413_57091647_57091767_57092296_57092413_57093608_57093729_57094578_57094761_57110477_57110740_57111325_57111397_57112357_57112448_57115233_57115326_57137882
transcript_41979.nic	chr17	-	1352	3	ISM	ENSMUSG00000024207.9	ENSMUST00000043062.5	2609	15	27388	0	27388	0	intron_retention	FALSE	canonical	2	5	junction_1	2	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCTTGAGTCTTCATTCC	NA	False	NA	NA	False	NA	NA	NA	57154059	57150102	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_-_57150378_57152403_57152514_57153092
transcript_4198.nnic	chr1	-	748	5	NIC	ENSMUSG00000097993.8	novel	6108	37	NA	NA	213	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_2	6.06217782649107	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTGTGTCTGCTTCTGCA	NA	False	NA	0	True	AATAAA	-19	NA	135037989	135036234	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_135036434_135036656_135036793_135037300_135037418_135037546_135037676_135037822
transcript_41982.nnic	chr17	+	929	5	NNC	ENSMUSG00000024209.10	novel	2677	14	NA	NA	8467	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	26.0192236625154	228	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCTCGCACCCCGAGGT	NA	False	NA	16	True	ATTAAA	-16	NA	57190969	57195904	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_57191026_57191750_57191969_57192083_57192224_57193440_57193688_57195636
transcript_41991.nnic	chr17	+	711	4	NNC	ENSMUSG00000024209.10	novel	2677	14	NA	NA	8467	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	29.6797723860694	384	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCTCGCACCCCGAGGT	NA	False	NA	16	True	ATTAAA	-16	NA	57190969	57195904	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_57191026_57192083_57192224_57193440_57193688_57195636
transcript_42.known	ERCC-00084	+	978	1	FSM	ERCC-00084A	DQ883682	978	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00084_+_0_1000
transcript_42002.known	chr17	+	434	1	FSM	ENSMUSG00000002660.9	ENSMUST00000233845.2	434	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57297391	57297825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_57297400_57297800
transcript_42003.known	chr17	+	983	6	FSM	ENSMUSG00000002660.9	ENSMUST00000002735.9	983	6	0	0	0	0	multi-exon	FALSE	canonical	3	1307	junction_4	119.017645750536	9722	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGAAGCACCTTCCATT	NA	False	NA	33	True	ATTAAA	-21	NA	57297304	57303188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_57297514_57297605_57297678_57298293_57298391_57299825_57300014_57300447_57300554_57302877
transcript_42005.known	chr17	+	736	3	FSM	ENSMUSG00000002661.15	ENSMUST00000074141.14	736	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	221	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAAGCAAGCAAAGAAAGA	367	False	NA	NA	False	NA	NA	NA	57304338	57306311	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_57304568_57305670_57305796_57305929
transcript_42007.known	chr17	+	917	4	FSM	ENSMUSG00000002661.15	ENSMUST00000002737.7	917	4	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_1	15.369522511198	2374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAACAAAAAACC	371	False	NA	NA	False	NA	NA	NA	57304342	57306322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_57304568_57305388_57305563_57305670_57305796_57305929
transcript_42009.known	chr17	-	1717	13	FSM	ENSMUSG00000002658.10	ENSMUST00000002733.7	1717	13	0	0	0	0	multi-exon	FALSE	canonical	3	510	junction_7	59.552672763977	1216	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGTGTGCGAGTCATCA	NA	False	NA	-6	True	AATAAA	-13	NA	57318288	57310404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_57310632_57310720_57310812_57310914_57311054_57311121_57311196_57311308_57311429_57311510_57311573_57311665_57311820_57312359_57312545_57313985_57314157_57314712_57314907_57316687_57316761_57317975_57318023_57318108
transcript_42028.known	chr17	+	778	5	FSM	ENSMUSG00000044279.16	ENSMUST00000169543.8	778	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	66.6520817379322	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTTAGCTGTAAGCTCT	1578	False	NA	NA	False	AATAAA	-30	NA	57369282	57372917	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_57369374_57369594_57369767_57370636_57370699_57372089_57372234_57372608
transcript_42031.known	chr17	+	1206	4	FSM	ENSMUSG00000044279.16	ENSMUST00000097299.10	1206	4	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	33.4099120355355	557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTAGCTGTAAGCTCTT	1526	False	NA	NA	False	AATAAA	-31	NA	57369230	57372918	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_57369374_57369594_57369767_57370636_57370699_57372089
transcript_4204.known	chr1	+	1713	7	FSM	ENSMUSG00000026426.11	ENSMUST00000027684.11	1713	7	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_3	43.3720980457354	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGTGTGTATGGTGCTGGT	NA	False	NA	15	True	AATAAA	-19	NA	135074561	135084007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_135074839_135080208_135080290_135080530_135080605_135081913_135082008_135082145_135082214_135082450_135082522_135082959
transcript_42042.known	chr17	-	598	4	FSM	ENSMUSG00000046329.15	ENSMUST00000171528.2	598	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	3.39934634239519	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTTTACCCATCAGTG	NA	False	NA	NA	False	CATAAA	-19	NA	57360582	57354050	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_57354337_57359681_57359850_57360240_57360349_57360546
transcript_42043.known	chr17	-	1014	4	FSM	ENSMUSG00000079414.4	ENSMUST00000233039.2	1014	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGCTCCTAAGTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	57412942	57399034	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_57399770_57409054_57409154_57410349_57410485_57412897
transcript_42044.known	chr17	-	1560	3	FSM	ENSMUSG00000079414.4	ENSMUST00000233454.2	1560	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAAATAAAATTATAT	NA	False	NA	NA	False	NA	NA	NA	57412922	57398369	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_57399770_57410349_57410485_57412897
transcript_42046.known	chr17	+	1290	3	FSM	ENSMUSG00000035678.9	ENSMUST00000039490.9	1290	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAGCCTTTTATTATTT	25	False	NA	NA	False	AATAAA	-10	NA	57412324	57414757	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_57412861_57413249_57413287_57414040
transcript_4205.known	chr1	+	1495	7	FSM	ENSMUSG00000026426.11	ENSMUST00000125774.2	1495	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	183.490235889179	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGTGTGTATGGTGCTGGT	NA	False	NA	15	True	AATAAA	-19	NA	135075406	135084007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_135075466_135080208_135080290_135080530_135080605_135081913_135082008_135082145_135082214_135082450_135082522_135082959
transcript_42056.known	chr17	-	2064	17	FSM	ENSMUSG00000005823.10	ENSMUST00000005975.8	2064	17	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_12	32.0784560686764	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAATAAAGAAAAAGTG	NA	False	NA	-59	True	CATAAA	-13	NA	57554689	57541971	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_57542367_57542922_57543048_57543155_57543240_57543373_57543424_57543696_57543741_57543870_57544002_57544205_57544324_57544423_57544498_57544850_57544927_57545029_57545164_57549733_57549839_57549940_57550114_57551246_57551369_57552028_57552112_57552294_57552346_57553763_57553884_57554510
transcript_42059.known	chr17	-	2405	17	FSM	ENSMUSG00000005823.10	ENSMUST00000233568.2	2405	17	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_12	26.3293443708726	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACAAAAAACGATCTGT	NA	False	NA	NA	False	NA	NA	NA	57554672	57541634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_57542367_57542922_57543048_57543155_57543240_57543373_57543424_57543696_57543741_57543870_57544002_57544205_57544324_57544423_57544498_57544850_57544927_57545029_57545164_57549733_57549839_57549940_57550135_57551246_57551369_57552028_57552112_57552294_57552346_57553763_57553884_57554510
transcript_4206.nnic	chr1	+	1252	2	Genic_Genomic	ENSMUSG00000079139.5	novel	1231	1	NA	NA	-2	188	multi-exon	FALSE	canonical	3	144	junction_1	0	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTATTCTTATTACCTGGG	4159	False	NA	NA	False	AATAAA	-25	NA	135159730	135161151	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr1_+_135160090_135160258
transcript_4207.nnic	chr1	+	721	2	Genic_Genomic	ENSMUSG00000079139.5	novel	1231	1	NA	NA	-2	188	multi-exon	FALSE	canonical	3	66	junction_1	0	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTATTCTTATTACCTGGG	4159	False	NA	NA	False	AATAAA	-25	NA	135159730	135161151	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr1_+_135160090_135160789
transcript_42070.known	chr17	+	2224	14	FSM	ENSMUSG00000019487.12	ENSMUST00000019631.11	2224	14	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_12	30.2353686068634	541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCCCGTGTGGAATAAATG	NA	False	NA	NA	False	GATAAA	-13	NA	57556481	57570665	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_57556572_57557741_57557858_57557954_57558012_57560261_57560410_57560496_57560560_57561056_57561162_57561259_57561389_57562017_57562165_57562272_57562468_57564234_57564345_57568289_57568423_57568639_57568789_57569356_57569473_57569999
transcript_42077.nnic	chr17	+	1998	13	NIC	ENSMUSG00000019487.12	novel	2136	15	NA	NA	-42	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_2	103.173666967669	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTGGAGTCTGCACCGC	NA	False	NA	13	True	ATTAAA	-23	NA	57556412	57570427	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_57556572_57557741_57557858_57560261_57560410_57560496_57560560_57561056_57561162_57561259_57561389_57562017_57562165_57562272_57562468_57564234_57564345_57568289_57568423_57568639_57568789_57569356_57569473_57569999
transcript_4208.known	chr1	+	1231	1	FSM	ENSMUSG00000079139.5	ENSMUST00000110798.5	1231	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	325	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGTTTACCAAATGAGCA	4161	False	NA	NA	False	NA	NA	NA	135159732	135160963	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_135159700_135161000
transcript_42082.known	chr17	-	792	1	FSM	ENSMUSG00000071052.5	ENSMUST00000095218.5	792	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	200	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATGTACACTAAATTTTC	NA	False	NA	NA	False	AAAAAG	-33	NA	58146216	58145424	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_58145400_58146200
transcript_42084.known	chr17	-	4113	7	FSM	ENSMUSG00000024228.13	ENSMUST00000025065.12	4113	7	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_4	5.17740818900302	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATATGTAGCACATTCTG	NA	False	NA	NA	False	ATTAAA	-18	NA	59320367	59306612	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_59309287_59310323_59310524_59313498_59313613_59314618_59314787_59316849_59317440_59318037_59318250_59320212
transcript_42093.nic	chr17	+	2801	19	NIC	ENSMUSG00000000127.16	novel	2973	18	NA	NA	-49	0	combination_of_known_junctions	FALSE	canonical	3	108	junction_1	24.9886393940413	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCGTATTAGCTAACCACAG	NA	False	NA	4	True	AATAAA	-15	NA	64170960	64446192	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_64171051_64203012_64203279_64214275_64214450_64218459_64218560_64228607_64228792_64230356_64230495_64231053_64231174_64241284_64241408_64248285_64248476_64280059_64280153_64288474_64288682_64298588_64298712_64336284_64336342_64342441_64342558_64344564_64344660_64385846_64385971_64440435_64440591_64444704_64444828_64445869
transcript_42099.nnic	chr17	+	770	4	NNC	ENSMUSG00000000127.16	novel	2913	18	NA	NA	161712	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	76.6913003903021	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCGTATTAGCTAACCACAG	NA	False	NA	4	True	AATAAA	-15	NA	64406678	64446192	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_64406848_64440435_64440591_64444704_64444828_64445869
transcript_4210.known	chr1	-	2288	11	FSM	ENSMUSG00000041926.16	ENSMUST00000077340.14	2288	11	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_8	16.9602476397015	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTTGGAGTTATAGAATG	NA	False	NA	-14	True	AATAAA	-22	NA	135211822	135190449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_135190868_135191790_135191934_135192920_135193146_135194607_135194717_135194907_135195021_135195820_135195935_135199266_135199503_135200099_135200217_135205126_135205276_135206504_135206646_135211299
transcript_42101.known	chr17	+	2948	15	FSM	ENSMUSG00000000127.16	ENSMUST00000232945.2	2948	15	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_10	31.634471639627	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCAAAAAAAAAAAAAAGCAT	NA	False	NA	NA	False	NA	NA	NA	64171009	64345583	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_64171051_64203012_64203279_64214275_64214450_64218459_64218560_64228607_64228792_64230356_64230495_64231053_64231174_64241284_64241408_64248285_64248476_64280059_64280153_64288477_64288682_64298588_64298712_64336284_64336342_64342441_64342558_64344564
transcript_42102.known	chr17	-	4740	10	FSM	ENSMUSG00000024083.17	ENSMUST00000172818.8	4740	10	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_6	24	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATTGTGTGACCCTATC	NA	False	NA	-3	True	AATAAA	-30	NA	64638911	64587999	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_64590534_64593995_64594118_64594522_64594638_64596927_64597040_64599833_64600020_64604718_64604905_64615616_64616662_64618165_64618367_64619995_64620114_64638790
transcript_42105.known	chr17	-	4488	9	FSM	ENSMUSG00000024083.17	ENSMUST00000172733.2	4488	9	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_5	42.6614580154031	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTCATTTCTAATATTTAA	NA	False	NA	-18	True	AATAAA	-15	NA	64638860	64588014	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_64590534_64593995_64594118_64594522_64594638_64596927_64597040_64599833_64600020_64615616_64616662_64618165_64618367_64619995_64620114_64638790
transcript_4211.known	chr1	-	2171	10	FSM	ENSMUSG00000041926.16	ENSMUST00000074357.8	2171	10	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_7	75.0946727574148	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTTGGAGTTATAGAATG	NA	False	NA	-14	True	AATAAA	-22	NA	135211822	135190449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_135190868_135191790_135191934_135192920_135193146_135194607_135194717_135194907_135195021_135195820_135195935_135199266_135199503_135205126_135205276_135206504_135206646_135211299
transcript_42112.known	chr17	-	3473	7	FSM	ENSMUSG00000056515.10	ENSMUST00000070673.9	3473	7	0	0	0	0	multi-exon	TRUE	canonical	3	62	junction_1	10.1775897605147	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTGTCCTTTCCTCATT	NA	False	NA	0	True	AATAAA	-15	NA	66079747	65958723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_65961499_65974860_65974971_66003265_66003373_66004985_66005058_66024476_66024559_66029002_66029083_66079500
transcript_42116.known	chr17	-	555	3	FSM	ENSMUSG00000056515.10	ENSMUST00000233258.2	555	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	45	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTGGAAATCTTAATTTT	NA	False	NA	NA	False	AATAAA	-23	NA	66079635	66028260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_66028601_66029002_66029083_66079500
transcript_42117.known	chr17	+	3850	20	FSM	ENSMUSG00000061950.18	ENSMUST00000073104.11	3850	20	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_2	67.7698974676079	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGGAGAAAGGCGTTTGT	NA	False	NA	35	True	AATAAA	-32	NA	66090349	66148921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_66090445_66090618_66090664_66110154_66110291_66110854_66110962_66117532_66117676_66118237_66118385_66120452_66120561_66120682_66120749_66121300_66121460_66122917_66123046_66131254_66131785_66136369_66136543_66137991_66138088_66139948_66140135_66141977_66142140_66142977_66143079_66144678_66144800_66144884_66145020_66145812_66145955_66147851
transcript_42118.known	chr17	+	3784	20	FSM	ENSMUSG00000061950.18	ENSMUST00000160664.8	3784	20	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_1	42.2814078706415	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGATGGGAGAAAGGCGT	NA	False	NA	31	True	AATAAA	-28	NA	66090360	66148917	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_66090445_66090618_66090664_66110205_66110291_66110854_66110962_66117532_66117676_66118237_66118385_66120452_66120561_66120682_66120749_66121300_66121460_66122917_66123046_66131254_66131785_66136369_66136543_66137991_66138088_66139948_66140135_66141977_66142140_66142977_66143079_66144678_66144800_66144884_66145020_66145812_66145955_66147851
transcript_42123.known	chr17	-	3811	10	FSM	ENSMUSG00000024096.18	ENSMUST00000024905.11	3811	10	0	0	0	0	multi-exon	FALSE	canonical	1	202	junction_3	142.261973611371	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGCTTCTATTGTCCACT	NA	False	NA	NA	False	AATAAA	-31	NA	66191949	66155412	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_66157191_66159114_66159239_66159684_66159807_66161086_66161195_66164656_66164789_66165967_66166130_66168250_66168601_66171268_66171728_66174526_66174826_66191672
transcript_42124.known	chr17	-	3799	10	FSM	ENSMUSG00000024096.18	ENSMUST00000166543.10	3799	10	0	0	0	0	multi-exon	FALSE	canonical	1	126	junction_9	189.388163682976	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATTTGATTTTTGTACGG	NA	False	NA	NA	False	NA	NA	NA	66192793	66155760	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_66157191_66159114_66159239_66159684_66159807_66161086_66161195_66164656_66164789_66165967_66166130_66168250_66168601_66171268_66171728_66174526_66174826_66192180
transcript_42132.known	chr17	-	443	3	FSM	ENSMUSG00000024096.18	ENSMUST00000233399.2	443	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	331	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCTGAAAGTCCTTCCAA	NA	False	NA	NA	False	NA	NA	NA	66175046	66171686	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_66171728_66174526_66174826_66174943
transcript_42135.nic	chr17	-	853	3	ISM	ENSMUSG00000024096.18	ENSMUST00000024905.11	3811	10	-14	16052	-14	222	5prime_fragment	FALSE	canonical	3	383	junction_2	139.5	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGCCAATTCAGGAGCC	NA	False	NA	16	True	AAAAAG	-1	NA	66191963	66171464	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_-_66171728_66174526_66174826_66191672
transcript_42141.nic	chr17	-	750	3	ISM	ENSMUSG00000024096.18	ENSMUST00000024905.11	3811	10	-14	16155	-14	119	5prime_fragment	FALSE	canonical	3	383	junction_2	139.5	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCATAAAGAAGAAAAGCACA	NA	False	NA	-87	True	AAAAAG	-45	NA	66191963	66171567	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_-_66171728_66174526_66174826_66191672
transcript_42144.known	chr17	+	624	2	FSM	ENSMUSG00000117335.2	ENSMUST00000232741.2	624	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTGTGAAAAGGTCGTTT	NA	False	NA	NA	False	NA	NA	NA	66192627	66194022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_66192907_66193677
transcript_42146.known	chr17	-	4086	5	FSM	ENSMUSG00000024098.7	ENSMUST00000024906.6	4086	5	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_1	25.0636689253589	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCATGTTTTTTATTAATTT	8694	False	NA	1	True	AATAAA	-19	NA	66258221	66230059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_66233462_66236541_66236809_66244795_66244896_66255652_66255810_66258061
transcript_42154.known	chr17	-	1513	8	FSM	ENSMUSG00000034647.16	ENSMUST00000150766.2	1513	8	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	22.2481368171974	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGTTAAAAGAAAATTAAA	NA	False	NA	NA	False	AATACA	-12	NA	66384017	66294039	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_66294489_66331070_66331219_66334246_66334390_66338365_66338567_66344487_66344635_66356780_66356929_66359948_66360087_66383878
transcript_42155.known	chr17	-	1403	5	FSM	ENSMUSG00000034647.16	ENSMUST00000129756.8	1403	5	0	0	0	0	multi-exon	FALSE	canonical	2	19	junction_2	27.5170401751351	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATCTGTGTGTCTGTAT	NA	False	NA	NA	False	AATAAA	-16	NA	66384084	66343792	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_66344635_66349527_66349597_66356780_66356929_66359948_66360087_66383878
transcript_42156.known	chr17	-	943	4	FSM	ENSMUSG00000034647.16	ENSMUST00000135136.8	943	4	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	25.5734237050888	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATTTTTTAGGAAATTA	NA	False	NA	NA	False	AATAAA	-30	NA	66384034	66344133	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_66344635_66356780_66356929_66359948_66360087_66383878
transcript_4216.known	chr1	-	1901	9	FSM	ENSMUSG00000003051.14	ENSMUST00000185752.2	1901	9	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_7	94.095363860288	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGCCTGAGCTCTCTGT	NA	False	NA	-10	True	AATAAA	-23	NA	135186176	135181316	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_135182119_135182662_135182859_135183712_135183830_135183971_135184062_135184208_135184329_135184516_135184613_135184742_135184965_135185352_135185521_135186086
transcript_42164.known	chr17	-	927	9	FSM	ENSMUSG00000024099.16	ENSMUST00000024909.15	927	9	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_8	1803.30633403618	818	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATAAGCTTTATTCGGTTT	5516	False	NA	-11	True	AATAAA	-15	NA	66408490	66386435	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_66386583_66387805_66387883_66390392_66390503_66394397_66394567_66396226_66396344_66396425_66396489_66398858_66398925_66407972_66408070_66408409
transcript_4217.known	chr1	-	2095	9	FSM	ENSMUSG00000003051.14	ENSMUST00000003135.14	2095	9	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_7	111.074791807142	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGAGCTCTCTGTGTAC	NA	False	NA	-6	True	AATAAA	-27	NA	135186306	135181312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_135182119_135182662_135182859_135183712_135183830_135183971_135184062_135184208_135184329_135184516_135184613_135184742_135185025_135185352_135185521_135186086
transcript_42176.known	chr17	-	1697	8	FSM	ENSMUSG00000024099.16	ENSMUST00000143987.9	1697	8	0	0	0	0	multi-exon	FALSE	canonical	3	4006	junction_3	144.496027768297	12605	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAGGAGGTAATAGTGCC	5452	False	NA	NA	False	AATAAA	-18	NA	66408554	66385632	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_66386583_66387805_66387883_66390392_66390503_66394397_66394567_66396226_66396344_66396425_66396489_66398858_66398925_66408409
transcript_42179.known	chr17	+	1831	11	FSM	ENSMUSG00000024101.16	ENSMUST00000116556.4	1831	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	39.5182236442885	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTGGGAGCTGTCCTTTT	NA	False	NA	24	True	AATAAA	-32	NA	66418639	66426442	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_66418727_66420857_66421012_66422665_66422778_66422948_66423096_66423254_66423392_66423623_66423757_66423967_66424170_66424258_66424439_66425057_66425217_66425805_66425875_66425991
transcript_42181.known	chr17	+	2905	11	FSM	ENSMUSG00000024101.16	ENSMUST00000072383.14	2905	11	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	29.1082462542833	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	3	True	NA	NA	NA	66418539	66427498	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_66418645_66420857_66421012_66422665_66422778_66422948_66423096_66423254_66423392_66423623_66423757_66423967_66424170_66424258_66424439_66425057_66425217_66425805_66425875_66425991
transcript_42186.known	chr17	+	4149	27	FSM	ENSMUSG00000035842.11	ENSMUST00000163605.3	4149	27	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	38.1668906050983	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATGAACTTCATGATCAAG	NA	False	NA	21	True	ATTAAA	-16	NA	66430514	66459162	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_66430688_66433167_66433316_66436851_66437098_66437454_66437464_66437674_66437830_66440211_66440258_66441079_66441188_66442816_66442905_66443283_66443490_66445081_66445235_66446022_66446070_66446392_66446473_66447183_66447229_66447345_66447414_66450182_66450222_66450420_66450542_66450644_66450768_66451172_66451286_66454662_66454736_66454986_66455091_66455648_66455799_66456025_66456095_66456207_66456309_66456962_66457048_66457325_66457405_66457568_66457724_66457797
transcript_42187.known	chr17	+	4141	27	FSM	ENSMUSG00000035842.11	ENSMUST00000224497.2	4141	27	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_22	18.327114778237	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCATGATCAAGTATGAGA	NA	False	NA	28	True	ATTAAA	-23	NA	66430607	66459169	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_66430688_66433167_66433316_66436851_66437098_66437454_66437542_66437674_66437830_66440211_66440258_66441079_66441188_66442816_66442905_66443283_66443490_66445081_66445235_66446022_66446070_66446392_66446473_66447183_66447229_66447345_66447414_66450182_66450222_66450420_66450542_66450644_66450768_66451172_66451286_66454662_66454736_66454986_66455091_66455648_66455799_66456025_66456095_66456207_66456309_66456962_66457048_66457325_66457405_66457568_66457724_66457797
transcript_42189.known	chr17	+	576	2	FSM	ENSMUSG00000035842.11	ENSMUST00000223600.2	576	2	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAAACGTTGGCTTTCCCC	NA	False	NA	NA	False	NA	NA	NA	66430550	66433606	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_66430688_66433167
transcript_42190.known	chr17	-	1152	5	FSM	ENSMUSG00000117220.2	ENSMUST00000233985.2	1152	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTCCCTCTTCTGGAGT	NA	False	NA	NA	False	NA	NA	NA	66543364	66538943	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_66539223_66539802_66539992_66541642_66542115_66542950_66543016_66543217
transcript_42194.known	chr17	-	228	2	FSM	ENSMUSG00000117010.2	ENSMUST00000233050.2	228	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCTTTGGAAACTACCAGC	NA	False	NA	NA	False	NA	NA	NA	66626507	66626070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_66626129_66626337
transcript_42198.nnic	chr17	-	1081	4	NNC	ENSMUSG00000052105.18	novel	2423	6	NA	NA	11878	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_3	102.924999662645	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTGAAATTGTAGTACAGT	NA	False	NA	-5	True	AATAAA	-19	NA	66669781	66654960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_66655517_66661117_66661373_66665016_66665185_66669679
transcript_42199.known	chr17	-	611	4	FSM	ENSMUSG00000052105.18	ENSMUST00000127259.2	611	4	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_2	12.5521135891752	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CCAAAAAAACAAAACAAAAC	NA	False	NA	NA	False	TTTAAA	-45	NA	66755364	66692740	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_66692915_66743074_66743234_66745161_66745387_66755311
transcript_42200.known	chr17	-	354	1	FSM	ENSMUSG00000093686.2	ENSMUST00000177415.2	354	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	353	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGCACACTTTTTAAGTA	NA	False	NA	NA	False	NA	NA	NA	66720979	66720625	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_66720600_66721000
transcript_42201.known	chr17	-	2544	4	FSM	ENSMUSG00000024105.4	ENSMUST00000024914.4	2544	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTCCTCGCTATGCATG	NA	False	NA	NA	False	NA	NA	NA	66901616	66861499	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_66863260_66866541_66867016_66900143_66900279_66901441
transcript_42210.nnic	chr17	-	863	5	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	0	2456	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_3	15.2704780540755	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCACAGCCAATTCATTAT	NA	False	NA	1	True	ATTAAA	-19	NA	69584203	69579900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_69580313_69582162_69582295_69582786_69582887_69583120_69583191_69584054
transcript_42211.nnic	chr17	-	812	5	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	-23	2456	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_3	9.90896059130321	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCACAGCCAATTCATTAT	NA	False	NA	1	True	ATTAAA	-19	NA	69584226	69579900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_69580313_69582162_69582295_69582786_69582887_69583120_69583191_69584128
transcript_42212.nnic	chr17	-	774	5	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	-14	2456	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	14.9164338901763	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCACAGCCAATTCATTAT	NA	False	NA	1	True	ATTAAA	-19	NA	69584217	69579900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_69580313_69582162_69582295_69582786_69582887_69583120_69583191_69584157
transcript_42216.nnic	chr17	-	938	5	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	-60	2456	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_2	9.09670269933013	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCACAGCCAATTCATTAT	NA	False	NA	1	True	ATTAAA	-19	NA	69584263	69579900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_69580313_69582162_69582295_69582786_69582902_69583120_69583191_69584054
transcript_42217.nnic	chr17	-	827	5	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	-23	2456	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_4	9.63068014212911	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCACAGCCAATTCATTAT	NA	False	NA	1	True	ATTAAA	-19	NA	69584226	69579900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_69580313_69582162_69582295_69582786_69582902_69583120_69583191_69584128
transcript_42218.nnic	chr17	-	789	5	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	-14	2456	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	16.6939360247965	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCACAGCCAATTCATTAT	NA	False	NA	1	True	ATTAAA	-19	NA	69584217	69579900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_69580313_69582162_69582295_69582786_69582902_69583120_69583191_69584157
transcript_42223.nnic	chr17	-	949	5	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	-60	2456	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_3	15.6923548264752	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCACAGCCAATTCATTAT	NA	False	NA	1	True	ATTAAA	-19	NA	69584263	69579900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_69580339_69582162_69582295_69582786_69582887_69583120_69583191_69584054
transcript_42224.nnic	chr17	-	838	5	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	-23	2456	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_3	7.5	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCACAGCCAATTCATTAT	NA	False	NA	1	True	ATTAAA	-19	NA	69584226	69579900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_69580339_69582162_69582295_69582786_69582887_69583120_69583191_69584128
transcript_42225.nnic	chr17	-	800	5	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	-14	2456	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	12.5374439181198	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCACAGCCAATTCATTAT	NA	False	NA	1	True	ATTAAA	-19	NA	69584217	69579900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_69580339_69582162_69582295_69582786_69582887_69583120_69583191_69584157
transcript_42227.nnic	chr17	-	964	5	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	-60	2456	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	11.6484977572217	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCACAGCCAATTCATTAT	NA	False	NA	1	True	ATTAAA	-19	NA	69584263	69579900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_69580339_69582162_69582295_69582786_69582902_69583120_69583191_69584054
transcript_42228.nnic	chr17	-	853	5	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	-23	2456	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_4	9.52299847737046	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCACAGCCAATTCATTAT	NA	False	NA	1	True	ATTAAA	-19	NA	69584226	69579900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_69580339_69582162_69582295_69582786_69582902_69583120_69583191_69584128
transcript_42229.nnic	chr17	-	815	5	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	-14	2456	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	15.9138304628395	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCACAGCCAATTCATTAT	NA	False	NA	1	True	ATTAAA	-19	NA	69584217	69579900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_69580339_69582162_69582295_69582786_69582902_69583120_69583191_69584157
transcript_4223.known	chr1	-	7280	6	FSM	ENSMUSG00000062580.10	ENSMUST00000081104.10	7280	6	0	0	0	0	multi-exon	FALSE	canonical	3	2331	junction_5	176.235070289656	3419	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTTGGCCATGATGTT	NA	False	NA	NA	False	NA	NA	NA	135241516	135222950	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_135229742_135232167_135232279_135233826_135233956_135236872_135236937_135237508_135237609_135241431
transcript_42233.nnic	chr17	-	747	5	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	0	612	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_3	16.1941347407016	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGGTTTGGTGCTTCATC	NA	False	NA	NA	False	NA	NA	NA	69584203	69581744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_69582041_69582162_69582295_69582786_69582887_69583120_69583191_69584054
transcript_42234.nnic	chr17	-	696	5	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	-23	612	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_3	7.22841614740048	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGGTTTGGTGCTTCATC	NA	False	NA	NA	False	NA	NA	NA	69584226	69581744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_69582041_69582162_69582295_69582786_69582887_69583120_69583191_69584128
transcript_42236.nnic	chr17	-	765	5	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	-3	612	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	12.8913730843537	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGGTTTGGTGCTTCATC	NA	False	NA	NA	False	NA	NA	NA	69584206	69581744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_69582041_69582162_69582295_69582786_69582902_69583120_69583191_69584054
transcript_42237.nnic	chr17	-	711	5	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	-23	612	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_4	10.0591997693654	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGGTTTGGTGCTTCATC	NA	False	NA	NA	False	NA	NA	NA	69584226	69581744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_69582041_69582162_69582295_69582786_69582902_69583120_69583191_69584128
transcript_4224.known	chr1	+	3948	3	FSM	ENSMUSG00000048096.8	ENSMUST00000059352.3	3948	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGTAGTCCTGGCTAACA	NA	False	NA	NA	False	NA	NA	NA	135252544	135295803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_135253009_135291407_135292908_135293819
transcript_4226.known	chr1	-	1763	5	FSM	ENSMUSG00000041889.8	ENSMUST00000041240.4	1763	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	2.8613807855649	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGAGTCCGTCCTTCCTT	NA	False	NA	3	True	NA	NA	NA	135302975	135298794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_135299735_135299934_135300103_135300889_135301024_135302115_135302288_135302626
transcript_42269.known	chr17	-	764	3	FSM	ENSMUSG00000100572.2	ENSMUST00000187090.2	764	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	7	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGCCAGAGGAACGTATG	NA	False	NA	NA	False	NA	NA	NA	69584203	69582356	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_69582902_69583120_69583191_69584054
transcript_42271.nnic	chr17	-	718	4	NNC	ENSMUSG00000117069.2	novel	1128	2	NA	NA	879	1455	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2.16024689946929	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCCTTTTGTATCAATG	NA	False	NA	NA	False	AATAAA	-17	NA	69690324	69687743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_69688029_69688199_69688384_69689198_69689294_69690170
transcript_42272.known	chr17	+	3743	3	FSM	ENSMUSG00000049672.16	ENSMUST00000112674.8	3743	3	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	58	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTTTTTGTATTTGTGTT	NA	False	NA	NA	False	AAAACA	-43	NA	69690044	69697745	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_69690265_69692415_69692500_69694306
transcript_42273.known	chr17	+	3625	3	FSM	ENSMUSG00000049672.16	ENSMUST00000062369.14	3625	3	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	68.5	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTTTTTGTATTTGTGTT	NA	False	NA	NA	False	AAAACA	-43	NA	69690313	69697745	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_69690416_69692415_69692500_69694306
transcript_42275.known	chr17	+	4358	3	FSM	ENSMUSG00000049672.16	ENSMUST00000112676.4	4358	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	80	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCATAGGCTATCTTTCCA	NA	False	NA	NA	False	AAGAAA	-13	NA	69690834	69698194	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_69691221_69692415_69692500_69694306
transcript_42276.nnic	chr17	-	887	3	NNC	ENSMUSG00000117069.2	novel	1128	2	NA	NA	1492	1455	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCCTTTTGTATCAATG	NA	False	NA	NA	False	AATAAA	-17	NA	69689711	69687743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_69688029_69688199_69688384_69689293
transcript_4228.known	chr1	-	1404	3	FSM	ENSMUSG00000041889.8	ENSMUST00000159918.2	1404	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	3.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTATGAGTCCGTCCTTC	NA	False	NA	0	True	NA	NA	NA	135301188	135298797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_135299735_135299934_135300103_135300889
transcript_42286.nnic	chr17	-	698	3	Antisense	novelGene_ENSMUSG00000003279.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	4.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACTGTTTGGGGGCAAAT	NA	False	NA	NA	False	AATAAA	-21	NA	71137094	71125664	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr17_-_71125929_71126393_71126694_71136960
transcript_42288.known	chr17	-	2481	3	FSM	ENSMUSG00000097282.2	ENSMUST00000181546.2	2481	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCTCAGACTAGCATCTT	NA	False	NA	NA	False	NA	NA	NA	71062577	71052323	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_71053515_71058319_71059095_71062062
transcript_42289.nnic	chr17	-	568	2	NIC	ENSMUSG00000097282.2	novel	2481	3	NA	NA	120	-1018	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTTATTGTATGTGGGT	NA	False	NA	NA	False	NA	NA	NA	71062457	71053341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_71053515_71062062
transcript_42293.nnic	chr17	-	733	4	NNC	ENSMUSG00000117231.2	novel	3157	3	NA	NA	9	6342	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	4.24264068711928	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGCTCTTCCCTCCAAAGT	NA	False	NA	NA	False	NA	NA	NA	71113045	71099278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_71099526_71101583_71101729_71108290_71108460_71112873
transcript_42298.nnic	chr17	-	585	3	NNC	ENSMUSG00000117231.2	novel	2325	5	NA	NA	-12	6342	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.5	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGCTCTTCCCTCCAAAGT	NA	False	NA	NA	False	NA	NA	NA	71113066	71099278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_71099526_71101583_71101729_71112873
transcript_42299.nnic	chr17	-	587	3	NNC	ENSMUSG00000117231.2	novel	3157	3	NA	NA	9	6341	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAGCTCTTCCCTCCAAAG	NA	False	NA	NA	False	NA	NA	NA	71113045	71099279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_71099526_71108290_71108460_71112873
transcript_4230.known	chr1	-	851	2	FSM	ENSMUSG00000041889.8	ENSMUST00000159181.2	851	2	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	135302815	135301625	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_135302288_135302626
transcript_42302.known	chr17	-	3157	3	FSM	ENSMUSG00000117231.2	ENSMUST00000233879.2	3157	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACACTCAGATTCACACT	NA	False	NA	-21	True	NA	NA	NA	71113054	71105620	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_71108460_71112006_71112144_71112873
transcript_42304.known	chr17	+	385	2	FSM	ENSMUSG00000093622.2	ENSMUST00000175668.2	385	2	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	0	383	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTAGAAAATTTTAAATAAA	280	False	NA	-4	True	ATTAAA	-8	NA	71141658	71143039	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_71141798_71142793
transcript_4231.known	chr1	-	6247	24	FSM	ENSMUSG00000041879.14	ENSMUST00000041023.14	6247	24	0	0	0	0	multi-exon	TRUE	canonical	3	518	junction_15	35.6964730086209	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTCCTGTCAGTTTCAGT	NA	False	NA	-4	True	AATAAA	-21	NA	135358237	135310049	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_135313216_135313664_135313742_135313956_135314059_135314421_135314545_135315111_135315246_135316248_135316416_135317050_135317327_135318275_135318405_135319233_135319383_135321873_135322101_135327781_135327942_135329970_135330111_135331025_135331133_135331961_135332061_135333558_135333711_135334254_135334314_135334496_135334598_135334689_135334810_135335725_135335813_135337130_135337220_135346974_135347177_135347728_135347816_135348029_135348092_135358005
transcript_42315.known	chr17	-	1714	3	FSM	ENSMUSG00000047407.18	ENSMUST00000166395.9	1714	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	438.5	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCAATGAAGAGCATTTTC	NA	False	NA	78	True	AATAAA	-20	NA	71158729	71151205	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_71152268_71153166_71153394_71158304
transcript_42316.known	chr17	-	1388	3	FSM	ENSMUSG00000047407.18	ENSMUST00000118283.8	1388	3	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_2	292	1597	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCAATGAAGAGCATTTTC	NA	False	NA	78	True	AATAAA	-20	NA	71160541	71151205	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_71152268_71153166_71153394_71160442
transcript_42317.known	chr17	-	1631	3	FSM	ENSMUSG00000047407.18	ENSMUST00000059775.15	1631	3	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_2	253.5	1229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGAGCATTTTCTTGAAG	NA	False	NA	84	True	AATAAA	-26	NA	71158202	71151199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_71152268_71153166_71153394_71157866
transcript_42326.nnic	chr17	+	378	3	NNC	ENSMUSG00000100865.3	novel	443	4	NA	NA	-1010	-18984	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.5	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCATTTTTCATAAAACTAT	NA	False	NA	NA	False	ATTAAA	-17	NA	71159751	71163976	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_71159899_71161472_71161556_71163828
transcript_42330.known	chr17	+	473	1	FSM	ENSMUSG00000100865.3	ENSMUST00000184151.3	473	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3326	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	242	False	NA	NA	False	AATAAA	-15	NA	71182834	71183307	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_71182800_71183300
transcript_42335.known	chr17	-	837	4	FSM	ENSMUSG00000117098.2	ENSMUST00000233357.2	837	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1032.1984090065	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGACTGGAACGGGGGACA	2276	False	NA	-127	True	TTTAAA	-44	NA	71309200	71281113	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_71281492_71282453_71282616_71284042_71284242_71309102
transcript_42338.known	chr17	-	980	4	FSM	ENSMUSG00000024048.16	ENSMUST00000024846.13	980	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1388.00920586124	1382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTAGTTGTTTAGCGTTA	6469	False	NA	-19	True	ATTAAA	-14	NA	71305007	71301288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_71301780_71303104_71303267_71303691_71303891_71304879
transcript_4234.nnic	chr1	-	1094	7	NNC	ENSMUSG00000041879.14	novel	6247	24	NA	NA	11	-911	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	302.300071672723	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACACAAAATTTGTAACATG	NA	False	NA	NA	False	NA	NA	NA	135358218	135322813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_135322994_135336980_135337220_135346974_135347177_135347728_135347816_135348029_135348092_135354668_135354780_135358005
transcript_42340.known	chr17	-	804	4	FSM	ENSMUSG00000024048.16	ENSMUST00000123686.8	804	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	1386.16072500831	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAGCCCAATGCATGCCC	1603	False	NA	NA	False	NA	NA	NA	71309873	71301543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_71301780_71303104_71303267_71303691_71303891_71309666
transcript_42346.known	chr17	-	1335	3	FSM	ENSMUSG00000024048.16	ENSMUST00000126529.2	1335	3	0	0	0	0	multi-exon	FALSE	canonical	3	3116	junction_2	53	683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTAGTTGTTTAGCGTTA	2316	False	NA	-19	True	ATTAAA	-14	NA	71309160	71301288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_71301780_71303104_71303891_71309102
transcript_42347.known	chr17	-	3873	8	FSM	ENSMUSG00000024053.12	ENSMUST00000232777.2	3873	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	6.13787173112595	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTCCTTTTCTGTATTT	NA	False	NA	-7	True	AATAAA	-15	NA	71617954	71559168	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_71560089_71562113_71562210_71562974_71563008_71563318_71563688_71580368_71582283_71587668_71587845_71617143_71617267_71617712
transcript_42348.nnic	chr17	-	1313	4	NNC	ENSMUSG00000024053.12	novel	3939	8	NA	NA	-43	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	6.59966329107444	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCCTTTTCTGTATTTGG	NA	False	NA	-5	True	AATAAA	-17	NA	71563384	71559166	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_71560089_71562113_71562243_71562974_71563008_71563155
transcript_42349.known	chr17	-	3939	8	FSM	ENSMUSG00000024053.12	ENSMUST00000233057.2	3939	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	6.04405594323034	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCCTTTTCTGTATTTGG	NA	False	NA	-5	True	AATAAA	-17	NA	71617985	71559166	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_71560089_71562113_71562243_71562974_71563008_71563318_71563688_71580368_71582283_71587668_71587845_71617143_71617267_71617712
transcript_42350.known	chr17	-	2201	17	FSM	ENSMUSG00000024056.11	ENSMUST00000024851.10	2201	17	0	0	0	0	multi-exon	TRUE	canonical	3	248	junction_10	48.8427003246135	789	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTCCCCTCCCATTTCTG	NA	False	NA	-11	True	AATAAA	-19	NA	71833852	71803094	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_71803349_71806261_71806365_71807266_71807398_71808503_71808597_71811760_71811851_71814254_71814408_71815562_71815769_71818339_71818485_71819387_71819495_71821183_71821278_71824538_71824629_71825732_71825836_71827754_71827928_71828022_71828147_71830576_71830655_71832627_71832738_71833705
transcript_42358.nnic	chr17	-	1666	4	NNC	ENSMUSG00000085492.8	novel	781	3	NA	NA	-294	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	34.8807492274273	122	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTATTTTTTAA	NA	False	NA	-15	True	AATAAA	-17	NA	71906044	71895551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_71895980_71897482_71897518_71898852_71898942_71904930
transcript_42359.nnic	chr17	-	1193	4	NNC	ENSMUSG00000085492.8	novel	781	3	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	34.8807492274273	134	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTATTTTTTAA	NA	False	NA	-15	True	AATAAA	-17	NA	71905785	71895551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_71895980_71897482_71897518_71898852_71898942_71905144
transcript_4236.nnic	chr1	-	1030	6	NNC	ENSMUSG00000041879.14	novel	6247	24	NA	NA	-28	-911	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	247.823808380067	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACACAAAATTTGTAACATG	NA	False	NA	NA	False	NA	NA	NA	135358265	135322813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_135322994_135336980_135337220_135346974_135347177_135347728_135347816_135348029_135348092_135358005
transcript_42363.known	chr17	-	781	3	FSM	ENSMUSG00000085492.8	ENSMUST00000143828.2	781	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	30	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTATTTTTTAA	NA	False	NA	-15	True	AATAAA	-17	NA	71905248	71895551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_71895980_71897482_71897518_71904930
transcript_42364.nnic	chr17	-	1084	3	NNC	ENSMUSG00000085492.8	novel	781	3	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_2	31	194	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTATTTTTTAA	NA	False	NA	-15	True	AATAAA	-17	NA	71905765	71895551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_71895980_71897482_71897518_71905144
transcript_42365.known	chr17	+	1247	6	FSM	ENSMUSG00000052525.15	ENSMUST00000124001.8	1247	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.6	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTATTGGTTTCTTCTCTA	NA	False	NA	NA	False	AATAAA	-21	NA	71859055	71885695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_71859137_71863234_71863485_71865615_71865675_71869497_71869584_71876011_71876184_71885096
transcript_42366.known	chr17	+	3450	18	FSM	ENSMUSG00000041057.11	ENSMUST00000047086.10	3450	18	0	0	0	0	multi-exon	FALSE	canonical	3	1341	junction_7	117.232918130641	1720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGTGTCTCGTGGTGTATA	NA	False	NA	18	True	AATAAA	-18	NA	71923209	71966026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_71923481_71932347_71932486_71933767_71933890_71937155_71937277_71938999_71939137_71940618_71940722_71943551_71943617_71945303_71945476_71947228_71947316_71948281_71948414_71949699_71949829_71955767_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470
transcript_42367.known	chr17	+	459	6	FSM	ENSMUSG00000041057.11	ENSMUST00000235094.2	459	6	0	0	0	0	multi-exon	FALSE	canonical	3	1489	junction_4	74.0470120936693	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGACCTCTCCCGGACA	NA	False	NA	16	True	NA	NA	NA	71949690	71960471	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_71949829_71955767_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447
transcript_42371.known	chr17	+	3120	3	FSM	ENSMUSG00000039770.7	ENSMUST00000045174.7	3120	3	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_1	49	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAATTCA	745	False	NA	NA	False	NA	NA	NA	73143447	73158190	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_73143787_73153273_73153439_73155574
transcript_42372.known	chr17	+	2419	3	FSM	ENSMUSG00000039770.7	ENSMUST00000233210.2	2419	3	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	120.5	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGGTACAGAACTGCTACT	1605	False	NA	8	True	AATAAA	-17	NA	73144307	73157432	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_73144704_73153273_73153439_73155574
transcript_42373.known	chr17	+	704	3	FSM	ENSMUSG00000039770.7	ENSMUST00000233886.2	704	3	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	156.5	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTCCTTCACTGAAAACAAA	1828	False	NA	NA	False	GATAAA	-17	NA	73144530	73155829	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_73144815_73153273_73153439_73155574
transcript_42374.known	chr17	+	3069	3	FSM	ENSMUSG00000024063.14	ENSMUST00000024857.14	3069	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	4	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTTGGGTTCCTTCC	NA	False	NA	10	True	AATAAA	-19	NA	73225299	73248942	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_73225574_73228182_73228286_73246250
transcript_42378.known	chr17	+	4467	6	FSM	ENSMUSG00000054469.15	ENSMUST00000067545.8	4467	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	24.2866218317822	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGTGATTCTGTTTTT	NA	False	NA	16	True	AATAAA	-26	NA	73414988	73550363	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_73415173_73468817_73468987_73476490_73476690_73494869_73495017_73503673_73503791_73546712
transcript_42379.known	chr17	+	3659	6	FSM	ENSMUSG00000024065.9	ENSMUST00000024860.9	3659	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	1.35646599662505	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTTTGGTGACTGAGCAT	NA	False	NA	3	True	AATACA	-20	NA	74111835	74139089	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_74112465_74123225_74123403_74127472_74127571_74134144_74134558_74135040_74135206_74136912
transcript_42382.known	chr17	-	3163	9	FSM	ENSMUSG00000058704.10	ENSMUST00000233514.3	3163	9	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_3	25.6502923959942	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTTTGTTTGTTTATTTG	NA	False	NA	NA	False	ATTAAA	-35	NA	74601858	74506030	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_74508321_74509255_74509361_74524021_74524099_74532426_74532570_74548899_74549012_74551969_74552083_74562222_74562292_74565418_74565501_74601686
transcript_42383.known	chr17	-	1210	7	FSM	ENSMUSG00000058704.10	ENSMUST00000232989.2	1210	7	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	104.977378515564	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTCTGATTTAAACTTATT	NA	False	NA	NA	False	AATAAA	-19	NA	74601796	74507696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_74508321_74509255_74509361_74524021_74524099_74532426_74532570_74562222_74562292_74565418_74565501_74601686
transcript_42388.known	chr17	-	734	5	FSM	ENSMUSG00000024067.15	ENSMUST00000233581.2	734	5	0	0	0	0	multi-exon	FALSE	canonical	3	1923	junction_4	306.562391692132	13107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGTTGTATATGACAAGT	NA	False	NA	-10	True	AATAAA	-24	NA	74623458	74606468	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_74606820_74614714_74614858_74622896_74622945_74623038_74623112_74623339
transcript_42389.known	chr17	-	512	4	FSM	ENSMUSG00000024067.15	ENSMUST00000233187.2	512	4	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	1032.98047738893	467	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTTATAGTTGTTGTA	NA	False	NA	-20	True	AATAAA	-14	NA	74623389	74606478	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_74606820_74622896_74622945_74623038_74623112_74623339
transcript_4239.known	chr1	-	1645	2	FSM	ENSMUSG00000009418.17	ENSMUST00000112103.2	1645	2	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAATAACT	NA	False	NA	NA	False	NA	NA	NA	135615843	135534184	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_135535643_135615656
transcript_42390.known	chr17	-	694	4	FSM	ENSMUSG00000024067.15	ENSMUST00000232687.2	694	4	0	0	0	0	multi-exon	FALSE	canonical	3	2414	junction_1	149.934059580278	3884	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTATAGTTGTTGTATA	NA	False	NA	-18	True	AATAAA	-16	NA	74623198	74606476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_74606820_74614714_74614858_74622896_74622945_74623038
transcript_42391.known	chr17	-	622	5	FSM	ENSMUSG00000024067.15	ENSMUST00000112571.5	622	5	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_4	1057.76707620345	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTAAGAACCTTCAGGACCA	NA	False	NA	NA	False	NA	NA	NA	74623403	74606650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_74606820_74614714_74614858_74622896_74622945_74623038_74623112_74623214
transcript_42397.known	chr17	+	2148	14	FSM	ENSMUSG00000024069.15	ENSMUST00000024870.9	2148	14	0	0	0	0	multi-exon	TRUE	canonical	3	152	junction_5	21.3572043468894	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCATTTACAATCGTAGTA	NA	False	NA	NA	False	AATAAA	-23	NA	74702602	74731216	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_74702664_74708906_74708994_74710998_74711084_74712679_74712723_74714215_74714282_74715840_74715922_74716347_74716384_74717328_74717424_74719268_74719318_74719601_74719722_74722614_74722718_74725614_74725663_74726526_74726596_74730011
transcript_42398.known	chr17	+	1938	14	FSM	ENSMUSG00000024069.15	ENSMUST00000179074.9	1938	14	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	50.5571327177388	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTGAGGTATATTCTACT	NA	False	NA	9	True	AATAAA	-22	NA	74702615	74731004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_74702664_74708906_74708994_74710998_74711084_74712679_74712723_74714200_74714282_74715840_74715922_74716347_74716384_74717328_74717424_74719268_74719318_74719601_74719722_74722614_74722718_74725614_74725663_74726526_74726596_74730011
transcript_42401.known	chr17	-	355	1	FSM	ENSMUSG00000117187.2	ENSMUST00000233026.2	355	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	145	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGGCCTAGGCCTACCCC	NA	False	NA	NA	False	AATGAA	-13	NA	74745634	74745279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_74745300_74745600
transcript_42408.nnic	chr17	-	457	3	NNC	ENSMUSG00000117358.2	novel	327	3	NA	NA	212	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	41.5	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCATTGGTCTCAGTGTT	NA	False	NA	-5	True	AATAAA	-14	NA	74834427	74826659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_74826911_74830509_74830574_74834285
transcript_4241.known	chr1	+	1828	6	FSM	ENSMUSG00000026421.15	ENSMUST00000097561.9	1828	6	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	177.543684765187	1153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCTTTCCTGTCTGTCT	NA	False	NA	24	True	AATAAA	-17	NA	135647798	135679970	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_135647932_135667137_135667251_135672996_135673166_135674457_135674588_135678302_135678397_135678781
transcript_42414.known	chr17	+	2651	20	FSM	ENSMUSG00000024078.8	ENSMUST00000234568.2	2651	20	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_19	29.4919116570221	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCTTATTTTGTGATGTT	NA	False	NA	6	True	AATAAA	-17	NA	75024906	75170561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_75025007_75025628_75025807_75028515_75028646_75031612_75031754_75036877_75036981_75046592_75046758_75049912_75050047_75054646_75054760_75058056_75058124_75077237_75077352_75084638_75084735_75087777_75087901_75106178_75106407_75136486_75136586_75142327_75142381_75147293_75147460_75163403_75163602_75165003_75165116_75169040_75169142_75170331
transcript_42422.known	chr17	+	644	4	FSM	ENSMUSG00000024078.8	ENSMUST00000234751.2	644	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	63.6605581711837	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCTGAGGGTTAAGAAGAG	NA	False	NA	NA	False	NA	NA	NA	75024756	75030668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_75025007_75025628_75025807_75028515_75028646_75030582
transcript_42424.known	chr17	-	2817	8	FSM	ENSMUSG00000002017.11	ENSMUST00000112507.4	2817	8	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_4	28.1765570527511	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGGAGTTTTCTTTTA	NA	False	NA	-1	True	AATAAA	-22	NA	75858941	75844080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_75845857_75845941_75846110_75846395_75846513_75847105_75847187_75848190_75848376_75851742_75851878_75854605_75854755_75858735
transcript_42428.nic	chr17	-	966	5	ISM	ENSMUSG00000002017.11	ENSMUST00000112507.4	2817	8	28	2787	28	-472	5prime_fragment	FALSE	canonical	3	156	junction_1	30.0281118287514	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACTTAACTCATAATTTGT	NA	False	NA	NA	False	AATAAA	-23	NA	75858913	75846867	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_-_75847187_75848190_75848376_75851742_75851878_75854605_75854755_75858735
transcript_42430.known	chr17	-	528	2	FSM	ENSMUSG00000117648.2	ENSMUST00000234450.2	528	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATATTCTTTGTGGCGAG	NA	False	NA	NA	False	AATAAA	-14	NA	78507454	78506684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_78506781_78507022
transcript_42432.known	chr17	-	1939	8	FSM	ENSMUSG00000056121.17	ENSMUST00000070039.14	1939	8	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_3	15.727267365169	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGGAGTCTTGAGTTTTT	NA	False	NA	-6	True	AATAAA	-13	NA	78725560	78685313	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_78686175_78689036_78689103_78692172_78692249_78708058_78708328_78710168_78710311_78712156_78712274_78720292_78720402_78725261
transcript_42433.known	chr17	-	2041	9	FSM	ENSMUSG00000056121.17	ENSMUST00000112487.3	2041	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	124.244718197596	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGGAGTCTTGAGTTTTT	NA	False	NA	-6	True	AATAAA	-13	NA	78725581	78685313	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_78686175_78689036_78689103_78692172_78692249_78694419_78694501_78708058_78708328_78710168_78710311_78712156_78712274_78720292_78720402_78725261
transcript_42436.known	chr17	+	4134	10	FSM	ENSMUSG00000050668.11	ENSMUST00000170759.3	4134	10	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_6	15.3405779986718	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGTGTATGTGTGTGT	8852	False	NA	NA	False	TTTAAA	-7	NA	79143017	79155737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_79143108_79144222_79144350_79145259_79145332_79146415_79146643_79147506_79147549_79148391_79148513_79148647_79148739_79149541_79149659_79151247_79151330_79152572
transcript_42441.nic	chr17	+	1133	9	NIC	ENSMUSG00000050668.11	novel	4134	10	NA	NA	-54	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	40.2086355774478	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTACAAGTGATGTGGCATT	8776	False	NA	8	True	AATACA	-20	NA	79142941	79152787	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_79143108_79145259_79145332_79146415_79146643_79147506_79147549_79148391_79148513_79148647_79148739_79149541_79149659_79151247_79151330_79152572
transcript_42446.known	chr17	+	401	3	FSM	ENSMUSG00000050668.11	ENSMUST00000233113.2	401	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	68.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAAGAGCGGTGAGTCGTG	8830	False	NA	NA	False	NA	NA	NA	79142995	79146632	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_79143108_79145259_79145332_79146415
transcript_42449.known	chr17	-	4313	16	FSM	ENSMUSG00000024079.5	ENSMUST00000024884.5	4313	16	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_8	9.77525219907679	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATAAATCTCTCCTCTCT	NA	False	NA	NA	False	AATAAA	-5	NA	79190002	79159992	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_79162691_79162771_79162829_79163995_79164098_79165929_79166062_79171267_79171449_79172730_79172851_79173743_79173867_79176185_79176237_79176904_79176940_79177915_79177965_79178082_79178163_79178577_79178699_79181371_79181509_79183610_79183732_79185570_79185703_79189828
transcript_4245.known	chr1	+	1823	6	FSM	ENSMUSG00000026421.15	ENSMUST00000027677.8	1823	6	0	0	0	0	multi-exon	FALSE	canonical	3	392	junction_1	35.0884596413123	2594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCTTTCCTGTCTGTCT	NA	False	NA	24	True	AATAAA	-17	NA	135656884	135679970	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_135657013_135667137_135667251_135672996_135673166_135674457_135674588_135678302_135678397_135678781
transcript_42452.nnic	chr17	-	1868	13	NNC	ENSMUSG00000024079.5	novel	4313	16	NA	NA	8916	849	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_12	17.083739832562	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGCAATAGGGTTTTTTT	NA	False	NA	-3	True	ATTAAA	-23	NA	79181061	79161933	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_79162691_79162771_79162829_79163995_79164098_79165929_79166062_79171267_79171449_79172730_79172851_79173743_79173867_79176185_79176237_79176904_79176940_79177915_79177965_79178082_79178163_79178577_79178699_79181001
transcript_42453.known	chr17	-	704	4	FSM	ENSMUSG00000024079.5	ENSMUST00000171852.2	704	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	9.80929264637478	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTTCCTCTTTCCATCT	NA	False	NA	NA	False	AGTAAA	-26	NA	79189977	79181206	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_79181509_79183610_79183732_79185570_79185703_79189828
transcript_4246.known	chr1	+	1435	2	FSM	ENSMUSG00000041801.6	ENSMUST00000038945.6	1435	2	0	0	0	0	multi-exon	FALSE	canonical	3	639	junction_1	0	880	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTCTACTGAGTGAAATTC	6745	False	NA	22	True	AATGAA	-29	NA	135693856	135696874	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_135694633_135696215
transcript_42479.known	chr17	-	764	5	FSM	ENSMUSG00000038045.15	ENSMUST00000146474.8	764	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_4	54.3570372628973	803	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATTGGAACATTGCTG	NA	False	NA	-16	True	ATTAAA	-16	NA	79202529	79192325	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_79192646_79196359_79196517_79198274_79198370_79201971_79202099_79202464
transcript_4248.known	chr1	+	1105	10	FSM	ENSMUSG00000026418.17	ENSMUST00000152208.8	1105	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	37.8313345858061	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTTCTGTAGCCCTGT	7334	False	NA	43	True	ATTAAA	-24	NA	135727139	135738727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_135727235_135727710_135727759_135730331_135730362_135731019_135731024_135732790_135732833_135733236_135733369_135735258_135735349_135736370_135736548_135737363_135737474_135738350
transcript_42490.nic	chr17	-	1273	4	ISM	ENSMUSG00000038045.15	ENSMUST00000146474.8	764	5	-143	0	-143	0	intron_retention	FALSE	canonical	3	141	junction_3	32.273139846559	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATTGGAACATTGCTG	NA	False	NA	-16	True	ATTAAA	-16	NA	79202672	79192325	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_-_79192646_79196359_79196517_79198274_79198370_79201971
transcript_42497.nnic	chr17	-	660	3	NIC	ENSMUSG00000038045.15	novel	764	5	NA	NA	-136	12	combination_of_known_splicesites	FALSE	canonical	3	29	junction_1	21.5	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGCTGTCAGTGTGTTGT	NA	False	NA	-4	True	ATTAAA	-28	NA	79202665	79192313	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_79192646_79201971_79202099_79202464
transcript_42502.nnic	chr17	-	983	2	NIC	ENSMUSG00000038045.15	novel	764	5	NA	NA	-93	12	intron_retention	FALSE	canonical	3	29	junction_1	0	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGCTGTCAGTGTGTTGT	NA	False	NA	-4	True	ATTAAA	-28	NA	79202622	79192313	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_79192646_79201971
transcript_4251.known	chr1	+	1150	9	FSM	ENSMUSG00000026418.17	ENSMUST00000148201.8	1150	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	37.7721375487276	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTTCTGTAGCCCTGT	7765	False	NA	43	True	ATTAAA	-24	NA	135727570	135738727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_135727759_135730331_135730362_135731019_135731024_135732790_135732833_135733236_135733369_135735258_135735349_135736370_135736548_135737363_135737474_135738350
transcript_42510.known	chr17	-	4070	16	FSM	ENSMUSG00000024081.10	ENSMUST00000024885.10	4070	16	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_13	57.736720454914	1049	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTAGTGTCTATTAGCAT	NA	False	NA	-3	True	ATTAAA	-40	NA	79244495	79226434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003_79243497_79244303
transcript_42513.known	chr17	-	2920	16	FSM	ENSMUSG00000024081.10	ENSMUST00000233484.2	2920	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	165.681810173061	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTAGTTTTTGCTAGTCA	NA	False	NA	-6	True	AATAAA	-16	NA	79244470	79227273	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242289_79243497_79244303
transcript_4252.nic	chr1	+	1134	8	ISM	ENSMUSG00000026418.17	ENSMUST00000148201.8	1150	9	2589	0	2589	0	3prime_fragment	FALSE	canonical	0	0	junction_1	37.4089370529098	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTTCTGTAGCCCTGT	936	False	NA	43	True	ATTAAA	-24	NA	135730159	135738727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_135730362_135731019_135731024_135732790_135732833_135733236_135733369_135735258_135735349_135736370_135736548_135737363_135737474_135738350
transcript_42532.known	chr17	+	602	5	FSM	ENSMUSG00000062691.11	ENSMUST00000180077.7	602	5	0	0	0	0	multi-exon	FALSE	canonical	3	686	junction_1	395.694563394546	5004	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACGTGTGTGGGTCTGCAG	NA	False	NA	NA	False	AATAAA	-22	NA	79223928	79227735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_79223955_79225785_79225902_79226484_79226530_79227187_79227273_79227405
transcript_42533.known	chr17	+	753	5	FSM	ENSMUSG00000062691.11	ENSMUST00000063817.7	753	5	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_1	562.646592009585	5115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACGTGTGTGGGTCTGCAG	NA	False	NA	NA	False	AATAAA	-22	NA	79223945	79227735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_79224123_79225785_79225902_79226484_79226530_79227187_79227273_79227405
transcript_42539.known	chr17	+	1749	10	FSM	ENSMUSG00000024082.6	ENSMUST00000024887.6	1749	10	0	0	0	0	multi-exon	FALSE	canonical	3	388	junction_6	40.441391826191	958	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAATTGTCTCCTTATCAA	NA	False	NA	NA	False	AGTAAA	-12	NA	79244564	79254928	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_79244631_79244919_79245084_79245969_79246051_79247023_79247135_79249497_79249712_79250681_79250741_79251262_79251374_79252369_79252514_79253724_79253899_79254303
transcript_42540.known	chr17	+	2706	9	FSM	ENSMUSG00000024082.6	ENSMUST00000233068.2	2706	9	0	0	0	0	multi-exon	FALSE	canonical	3	388	junction_6	37.0202647208255	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAAGTTGTCTGTAGAAC	NA	False	NA	NA	False	GATAAA	-19	NA	79244565	79255481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_79244631_79244919_79245084_79245969_79246051_79247023_79247135_79249497_79249712_79250681_79250741_79251262_79251374_79252369_79252514_79253724
transcript_42541.known	chr17	+	514	2	FSM	ENSMUSG00000024082.6	ENSMUST00000233138.2	514	2	0	0	0	0	multi-exon	FALSE	canonical	3	397	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTACCCTCCTGAGTGCTG	NA	False	NA	NA	False	NA	NA	NA	79244587	79245390	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_79244631_79244919
transcript_42542.known	chr17	-	4743	19	FSM	ENSMUSG00000024070.16	ENSMUST00000119284.8	4743	19	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_5	36.6411106225551	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAAACAAAAACAAAACAGG	NA	False	NA	NA	False	NA	NA	NA	79328245	79257977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_79259460_79260105_79260192_79261902_79262171_79263950_79264050_79264570_79264733_79266460_79266568_79268539_79268613_79269955_79270009_79273603_79273881_79275468_79275547_79278788_79278913_79279831_79280016_79282163_79282242_79282803_79282997_79289202_79289361_79290954_79291087_79292643_79292783_79320052_79320971_79328113
transcript_42548.nnic	chr17	+	816	4	Antisense	novelGene_ENSMUSG00000024070.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0.942809041582063	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTGTTGGAATAATAGTA	NA	False	NA	NA	False	AATAAA	-24	NA	79269717	79272821	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr17_+_79269885_79271666_79271800_79271959_79272078_79272423
transcript_42553.known	chr17	+	2059	7	FSM	ENSMUSG00000024084.9	ENSMUST00000040789.6	2059	7	0	0	0	0	multi-exon	TRUE	canonical	3	226	junction_1	6.47216261298253	534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGAATAACTATTGCCTC	NA	False	NA	-2	True	AATATA	-14	NA	79359334	79397807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_79359818_79371356_79371504_79378101_79378381_79384910_79385088_79386895_79386996_79389175_79389293_79397051
transcript_42562.known	chr17	+	1473	6	FSM	ENSMUSG00000024084.9	ENSMUST00000233916.2	1473	6	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	82.0351144327842	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGAATTTATTTTCATGT	NA	False	NA	11	True	ATTAAA	-20	NA	79359616	79397650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_79359818_79378101_79378381_79384910_79385088_79386895_79386996_79389175_79389293_79397051
transcript_42565.known	chr17	-	2265	2	FSM	ENSMUSG00000036533.10	ENSMUST00000068958.9	2265	2	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	0	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGAACGTGTTCATTTA	NA	False	NA	NA	False	AATAAA	-12	NA	79662520	79641155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_79643146_79662245
transcript_42568.known	chr17	+	2118	11	FSM	ENSMUSG00000036368.9	ENSMUST00000225357.2	2118	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	2.75862284482674	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGCTGCAATCCTCTGGT	3580	False	NA	NA	False	GATAAA	-31	NA	79922490	79989678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_79922798_79928734_79929202_79957730_79957906_79959127_79959231_79966841_79966903_79974299_79974376_79975379_79975458_79977985_79978085_79979778_79979833_79979921_79980003_79989061
transcript_42575.known	chr17	-	3618	13	FSM	ENSMUSG00000059811.14	ENSMUST00000068282.7	3618	13	0	0	0	0	multi-exon	TRUE	canonical	3	301	junction_5	41.6619997386374	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAGTGTTCTGAAATTAAA	3751	False	NA	-2	True	AATAAA	-18	NA	80203552	80155818	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_80157708_80159953_80160386_80161262_80161335_80161982_80162040_80163564_80163693_80164536_80164676_80167215_80167309_80168531_80168589_80168857_80168909_80172131_80172237_80172470_80172606_80183230_80183476_80203337
transcript_42578.known	chr17	-	3371	12	FSM	ENSMUSG00000059811.14	ENSMUST00000112437.8	3371	12	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_11	103.456941975757	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCAAGTGTTCTGAAATTA	3751	False	NA	-4	True	AATAAA	-16	NA	80203552	80155820	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_80157708_80159953_80160386_80161262_80161335_80161982_80162040_80163564_80163693_80164536_80164676_80167215_80167309_80168531_80168589_80168857_80168909_80172131_80172237_80172470_80172606_80203337
transcript_42584.known	chr17	-	2849	2	FSM	ENSMUSG00000059811.14	ENSMUST00000222243.2	2849	2	0	0	0	0	multi-exon	FALSE	canonical	3	430	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACACAATACTTAGAATTCT	3763	False	NA	NA	False	ATTAAA	-23	NA	80203540	80180829	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_80183476_80203337
transcript_42587.known	chr17	-	3116	13	FSM	ENSMUSG00000024095.16	ENSMUST00000061331.14	3116	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_9	159.429974178843	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATACTAAGGCTGTTGTTC	3463	False	NA	-4	True	NA	NA	NA	80369763	80336915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_80337970_80339969_80340069_80340156_80340215_80341474_80341677_80342759_80342882_80346020_80346239_80351922_80351995_80356036_80356110_80356193_80356290_80357234_80357322_80358056_80358295_80360951_80361071_80369085
transcript_42588.known	chr17	-	3009	13	FSM	ENSMUSG00000024095.16	ENSMUST00000184635.8	3009	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	159.429974178843	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATACTAAGGCTGTTGTTC	3570	False	NA	-4	True	NA	NA	NA	80369656	80336915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_80337970_80339969_80340069_80340156_80340215_80341474_80341677_80342759_80342882_80346020_80346239_80351922_80351995_80356036_80356110_80356193_80356291_80357235_80357322_80358056_80358295_80360951_80361071_80369085
transcript_4259.nic	chr1	+	1182	6	ISM	ENSMUSG00000026418.17	ENSMUST00000148201.8	1150	9	4966	0	-258	0	3prime_fragment	FALSE	canonical	3	26	junction_1	26.8730348118704	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTTCTGTAGCCCTGT	3313	False	NA	43	True	ATTAAA	-24	NA	135732536	135738727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_135732833_135733236_135733369_135735258_135735349_135736370_135736548_135737363_135737474_135738350
transcript_42596.known	chr17	+	2314	7	FSM	ENSMUSG00000035473.11	ENSMUST00000039205.11	2314	7	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_3	8.09149072929224	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGACTCTTGTTCTTTTG	NA	False	NA	11	True	AATAAA	-19	NA	80434899	80492530	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_80435335_80445441_80445597_80452408_80452616_80457517_80457600_80488989_80489132_80490620_80490796_80491412
transcript_4262.known	chr1	+	721	5	FSM	ENSMUSG00000026418.17	ENSMUST00000129217.2	721	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	28.0624304008046	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCAGTGGTCCTGGAACT	3571	False	NA	NA	False	AGTAAA	-16	NA	135732794	135737647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_135732833_135733236_135733369_135735258_135735349_135736370_135736548_135737363
transcript_42631.known	chr17	-	2288	8	FSM	ENSMUSG00000024097.12	ENSMUST00000063417.11	2288	8	0	0	0	0	multi-exon	FALSE	canonical	3	759	junction_3	505.274425335341	3440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGATATTCAGTCTTTGG	NA	False	NA	-11	True	AATAAA	-23	NA	80514734	80507508	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511550_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
transcript_42632.known	chr17	-	1040	8	FSM	ENSMUSG00000024097.12	ENSMUST00000235069.2	1040	8	0	0	0	0	multi-exon	FALSE	canonical	3	1059	junction_3	412.241508371597	10109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTAGATGTTTTGATTTTT	NA	False	NA	-14	True	AATAAA	-9	NA	80514732	80508745	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
transcript_42633.known	chr17	-	1921	7	FSM	ENSMUSG00000024097.12	ENSMUST00000235036.2	1921	7	0	0	0	0	multi-exon	FALSE	canonical	3	1059	junction_3	429.146601472685	692	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTTTGATTTTTGTGTT	NA	False	NA	-9	True	AATAAA	-14	NA	80514734	80508740	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80512868_80513276_80513458_80514603
transcript_42634.known	chr17	-	987	7	FSM	ENSMUSG00000024097.12	ENSMUST00000234696.2	987	7	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	923.958693160396	659	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514732	80508738	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_80509032_80510119_80510174_80511583_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
transcript_42635.known	chr17	-	1898	7	FSM	ENSMUSG00000024097.12	ENSMUST00000234889.2	1898	7	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_3	729.529623951092	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514733	80508738	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511583_80511662_80511741_80512868_80513276_80513458_80514603
transcript_42636.known	chr17	-	839	2	FSM	ENSMUSG00000024097.12	ENSMUST00000234577.2	839	2	0	0	0	0	multi-exon	FALSE	canonical	3	2247	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGGCCTTGAACTCATCC	NA	False	NA	NA	False	NA	NA	NA	80512374	80511455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_80511662_80511741
transcript_42637.known	chr17	+	1134	3	FSM	ENSMUSG00000055760.13	ENSMUST00000069486.13	1134	3	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_1	34	3951	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCATATTTCTATTCTTAA	NA	False	NA	39	True	ATTAAA	-30	NA	80531869	80535926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_80532100_80533049_80533194_80535166
transcript_42642.known	chr17	-	4737	24	FSM	ENSMUSG00000035051.16	ENSMUST00000086555.11	4737	24	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_22	13.7365159867987	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTGGTGTGGAGTAGACG	878	False	NA	-7	True	AATAAA	-13	NA	80597572	80545739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_80546360_80549380_80549582_80553103_80553239_80554537_80554613_80555699_80555835_80557281_80557366_80557448_80557545_80558660_80558938_80560515_80560717_80561693_80561868_80562980_80563078_80565502_80565620_80567650_80567860_80571376_80571432_80572504_80572639_80574943_80575069_80576180_80576377_80577795_80577918_80580360_80580540_80582192_80583032_80583278_80583465_80585651_80585811_80588624_80588858_80597484
transcript_42651.known	chr17	+	644	5	FSM	ENSMUSG00000045257.11	ENSMUST00000061703.10	644	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_3	10.1242283656583	821	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCTTTTTGAATTATGTA	NA	False	NA	12	True	AATAAA	-15	NA	80597640	80604902	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_80597767_80599753_80599808_80601898_80602006_80602941_80603079_80604682
transcript_42655.nnic	chr17	+	500	4	NIC	ENSMUSG00000045257.11	novel	656	5	NA	NA	10	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	34.4705993887867	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTTTGAATTATGTATTG	NA	False	NA	15	True	AATAAA	-18	NA	80597650	80604905	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_80597767_80599753_80599808_80601898_80602006_80604682
transcript_42661.nic	chr17	-	814	4	ISM	ENSMUSG00000033966.9	ENSMUST00000234349.2	1991	10	57	25995	57	-25995	5prime_fragment	FALSE	canonical	1	1	junction_2	1.63299316185545	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTTGTTTGGCTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	80884856	80857956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_-_80858328_80863735_80863858_80867778_80868004_80884760
transcript_42664.nnic	chr17	-	1980	11	NNC	ENSMUSG00000024246.10	novel	2239	11	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_5	45.4774669479293	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATTTGCTTATAGACTC	8131	False	NA	NA	False	ATTAAA	-22	NA	81372529	81333760	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_81334400_81340060_81340170_81344926_81345042_81345533_81345606_81347860_81347975_81351528_81351617_81357365_81357419_81360323_81360402_81361552_81361963_81363203_81363340_81372363
transcript_42666.known	chr17	-	1833	10	FSM	ENSMUSG00000024246.10	ENSMUST00000025093.6	1833	10	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_3	16.3940669785982	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATTTGCTTATAGACTC	8164	False	NA	NA	False	ATTAAA	-22	NA	81372496	81333760	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_81334400_81340060_81340170_81344926_81345042_81345533_81345606_81351528_81351617_81357365_81357419_81360323_81360402_81361552_81361963_81363203_81363340_81372363
transcript_42668.nic	chr17	-	412	3	ISM	ENSMUSG00000024246.10	ENSMUST00000234801.2	2239	11	-18	28092	-18	-28092	5prime_fragment	FALSE	canonical	3	116	junction_1	11.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTCTCAAAGGGATGCTAA	8131	False	NA	NA	False	AAAAAG	-8	NA	81372529	81361852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_-_81361963_81363203_81363340_81372363
transcript_42669.known	chr17	-	885	1	FSM	ENSMUSG00000117438.2	ENSMUST00000234808.2	885	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	283	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCTGCTGTGCAGACGCC	NA	False	NA	NA	False	NA	NA	NA	82718248	82717363	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_82717400_82718200
transcript_4267.nnic	chr1	+	1082	4	NNC	ENSMUSG00000026418.17	novel	1105	10	NA	NA	2650	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	40.5983031938802	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTTCTGTAGCCCTGT	6221	False	NA	43	True	ATTAAA	-24	NA	135735444	135738727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_135735863_135736370_135736548_135737363_135737474_135738350
transcript_42670.known	chr17	+	515	1	FSM	ENSMUSG00000094256.3	ENSMUST00000077420.5	515	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGAAAAAAAAAAAAAAAGCT	NA	False	NA	NA	False	AATAAA	-15	NA	83595974	83596489	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_83596000_83596500
transcript_42685.known	chr17	-	1076	3	FSM	ENSMUSG00000024248.15	ENSMUST00000025095.9	1076	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	644	29188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTTTGTTTTTTGTTTT	9947	False	NA	-23	True	AATAAA	-23	NA	83821759	83809346	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_83810167_83811528_83811658_83821632
transcript_42686.known	chr17	-	1129	4	FSM	ENSMUSG00000024248.15	ENSMUST00000167741.9	1129	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	605.058858477605	3775	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAAGATGTTTTTAGTTT	9947	False	NA	-39	True	AATAAA	-7	NA	83821759	83809362	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_83810167_83811359_83811429_83811528_83811658_83821632
transcript_42687.known	chr17	+	2087	17	FSM	ENSMUSG00000055817.19	ENSMUST00000067826.15	2087	17	0	0	0	0	multi-exon	FALSE	canonical	1	12	junction_6	449.066236066574	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGTGTTTATTTTGTTT	NA	False	NA	NA	False	AATAAA	-18	NA	84013619	84122334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_84013715_84015827_84015896_84022042_84022137_84045757_84045885_84061282_84061347_84062987_84063106_84070342_84070443_84073935_84074036_84083010_84083200_84089330_84089406_84091705_84091765_84096349_84096472_84099081_84099231_84099970_84100194_84107478_84107566_84111879_84112027_84122064
transcript_42688.known	chr17	+	1723	14	FSM	ENSMUSG00000055817.19	ENSMUST00000112350.8	1723	14	0	0	0	0	multi-exon	FALSE	canonical	3	649	junction_11	147.297388673592	694	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGCCTTTGTTTTTTTTT	NA	False	NA	10	True	AATAAA	-15	NA	84013591	84100302	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_84013715_84015827_84015896_84022042_84022137_84045757_84045885_84061282_84061347_84062987_84063106_84070339_84070443_84073935_84074036_84083010_84083200_84089330_84089406_84091705_84091765_84096349_84096472_84099081_84099231_84099970
transcript_42697.known	chr17	-	1381	10	FSM	ENSMUSG00000000673.10	ENSMUST00000000687.9	1381	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.87247772737252	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTGTTCCCTGTTCATT	7058	False	NA	NA	False	TATAAA	-22	NA	84154178	84138584	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_84139151_84139255_84139339_84139755_84139825_84142207_84142354_84142619_84142664_84142903_84142994_84145900_84146008_84146229_84146314_84150624_84150704_84154065
transcript_4270.nnic	chr1	+	808	4	NNC	ENSMUSG00000026418.17	novel	1105	10	NA	NA	3174	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	38.7384391356527	64	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTTCTGTAGCCCTGT	6745	False	NA	43	True	ATTAAA	-24	NA	135735968	135738727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_135736113_135736370_135736548_135737363_135737474_135738350
transcript_42701.known	chr17	-	1617	2	FSM	ENSMUSG00000097254.3	ENSMUST00000180515.2	1617	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATACCAGACTTGTCAGA	NA	False	NA	NA	False	ATTAAA	-25	NA	84161822	84159103	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_84160543_84161644
transcript_42704.known	chr17	+	515	2	FSM	ENSMUSG00000117611.2	ENSMUST00000234776.2	515	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTGATTGTACCTTTCAT	NA	False	NA	NA	False	ATTAAA	-14	NA	84263676	84264952	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_84264011_84264771
transcript_42708.known	chr17	+	440	3	FSM	ENSMUSG00000117431.2	ENSMUST00000235072.2	440	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAAATGGCACTCGTGGTT	2478	False	NA	NA	False	NA	NA	NA	84316322	84320817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_84316398_84319125_84319229_84320555
transcript_42710.nnic	chr17	+	757	3	NNC	ENSMUSG00000117431.2	novel	440	3	NA	NA	-80	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	2	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAAATGGCACTCGTGGTT	2398	False	NA	NA	False	NA	NA	NA	84316242	84320817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_84316398_84318888_84319229_84320555
transcript_42711.known	chr17	+	434	2	FSM	ENSMUSG00000117431.2	ENSMUST00000234981.2	434	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGACTGGGATGGTTGCTC	NA	False	NA	NA	False	ATTAAA	-15	NA	84305982	84320837	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_84306135_84320555
transcript_42712.nnic	chr17	+	694	2	NIC	ENSMUSG00000117431.2	novel	440	3	NA	NA	-332	5	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGATGGTTGCTCTGGAT	2146	False	NA	NA	False	ATTAAA	-20	NA	84315990	84320842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_84316398_84320555
transcript_42715.known	chr17	-	2397	11	FSM	ENSMUSG00000024251.11	ENSMUST00000234313.2	2397	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	19.3496769998881	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84773633	84750799	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_84751979_84753932_84754154_84755372_84755468_84759136_84759325_84762036_84762086_84762299_84762333_84762446_84762596_84765267_84765399_84766233_84766329_84771784_84771930_84773521
transcript_42716.known	chr17	-	3530	2	FSM	ENSMUSG00000045817.9	ENSMUST00000060366.7	3530	2	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_1	0	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAACTCTTTGAGTAAT	NA	False	NA	NA	False	AATAAA	-10	NA	84495375	84491358	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_84494585_84495071
transcript_42718.nnic	chr17	+	956	8	NNC	ENSMUSG00000040852.7	novel	2807	10	NA	NA	-54	-6300	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	3.98978286964827	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTTTTCATAAACCCTGC	NA	False	NA	NA	False	ATTAAA	-18	NA	84819268	84873204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_84819393_84829123_84829254_84854890_84854954_84864799_84864950_84866917_84867002_84867515_84867598_84871245_84871426_84873061
transcript_42719.known	chr17	+	1354	13	FSM	ENSMUSG00000024253.10	ENSMUST00000025101.10	1354	13	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_6	7.6412622575651	727	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATCTAAGTATAAATTTT	NA	False	NA	16	True	AATAAA	-24	NA	84933923	84963016	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_84934005_84935712_84935831_84939063_84939099_84940946_84941017_84943659_84943749_84950299_84950487_84951532_84951602_84952146_84952225_84954672_84954750_84955073_84955145_84956643_84956742_84957136_84957230_84962728
transcript_42721.nnic	chr17	+	668	6	NNC	ENSMUSG00000024253.10	novel	1354	13	NA	NA	-55	-9243	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_5	29.355749011054	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGACCATTTTCTAAAGC	NA	False	NA	NA	False	ATTAAA	-15	NA	84933868	84948501	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_84934005_84935712_84935831_84939063_84939099_84940946_84941017_84943659_84943749_84948281
transcript_42722.known	chr17	-	4393	38	FSM	ENSMUSG00000024120.13	ENSMUST00000112308.9	4393	38	0	0	0	0	multi-exon	FALSE	canonical	3	476	junction_25	55.1799102769645	190	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTATGTATTTTTTTAT	NA	False	NA	-6	True	AATAAA	-16	NA	85097986	85012674	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_85012901_85013326_85013470_85014521_85014607_85015515_85015591_85017718_85017835_85017962_85018103_85020120_85020323_85024054_85024144_85030124_85030252_85033730_85033840_85033957_85034101_85038572_85038664_85039176_85039246_85047497_85047605_85047971_85048097_85056388_85056597_85057935_85058022_85058651_85058783_85059736_85059851_85060156_85060202_85060541_85060620_85060832_85060940_85061968_85062027_85063685_85063714_85069379_85069447_85071879_85071974_85074420_85074540_85077022_85077131_85077427_85077534_85077781_85077928_85078270_85078416_85078851_85078979_85079520_85079608_85080471_85080531_85080635_85080758_85082816_85082940_85084368_85084563_85097792
transcript_42725.known	chr17	+	1499	6	FSM	ENSMUSG00000061130.14	ENSMUST00000112307.4	1499	6	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	757.421256633322	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCACTGTGGTTTTATTCCA	NA	False	NA	11	True	AATAAA	-19	NA	85301100	85331419	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_85301968_85310693_85310812_85312339_85312452_85312936_85312995_85330459_85330508_85331123
transcript_42727.known	chr17	+	2670	6	FSM	ENSMUSG00000061130.14	ENSMUST00000080217.14	2670	6	0	0	0	0	multi-exon	FALSE	canonical	3	718	junction_5	336.634519917373	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGCACACTTTGGCTCAG	NA	False	NA	6	True	AATAAA	-22	NA	85265426	85322119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_85265823_85301107_85301968_85310693_85310812_85312339_85312452_85312936_85312995_85320993
transcript_42729.known	chr17	+	3323	6	FSM	ENSMUSG00000061130.14	ENSMUST00000112304.10	3323	6	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_5	340.544857544494	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATTGGCATACTTGTGGA	NA	False	NA	19	True	AATAAA	-31	NA	85265436	85324625	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_85265823_85301107_85301968_85310693_85310812_85312339_85312452_85312936_85312995_85322836
transcript_42730.known	chr17	+	1591	6	FSM	ENSMUSG00000061130.14	ENSMUST00000112305.10	1591	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	758.344881963345	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCACTGTGGTTTTATTCCA	NA	False	NA	11	True	AATAAA	-19	NA	85264168	85331419	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_85264316_85301107_85301968_85310693_85310812_85312339_85312452_85312936_85312995_85331123
transcript_42733.known	chr17	-	853	2	FSM	ENSMUSG00000097047.3	ENSMUST00000181147.2	853	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGAGGTTTTGTTGTTTGT	NA	False	NA	NA	False	ACTAAA	-15	NA	85265138	85262394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_85262737_85264627
transcript_42735.known	chr17	-	2734	15	FSM	ENSMUSG00000024127.16	ENSMUST00000171795.9	2734	15	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_9	21.6455679584736	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTCTTTGTGTAATTTTG	NA	False	NA	-3	True	TTTAAA	-4	NA	85397652	85371957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_85372162_85372469_85372544_85373059_85373184_85373575_85373726_85376312_85376530_85377855_85378032_85379339_85379538_85383293_85383480_85384036_85384254_85385916_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85395767_85396304_85397533
transcript_42736.known	chr17	-	3255	14	FSM	ENSMUSG00000024127.16	ENSMUST00000072406.5	3255	14	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_13	48.4489605166915	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAATTTTCTTCGTGTCT	NA	False	NA	-18	True	TATAAA	-38	NA	85397649	85370897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_85372162_85372469_85372544_85373059_85373184_85373575_85373726_85376312_85376530_85377855_85378032_85379339_85379538_85383293_85383480_85384036_85384254_85385916_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85397533
transcript_42738.known	chr17	-	1625	6	FSM	ENSMUSG00000024127.16	ENSMUST00000234036.2	1625	6	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_4	17.1043854025802	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATTTAAAAAAAAAATGTG	NA	False	NA	NA	False	AATAAA	-38	NA	85397659	85385486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85395767_85396304_85397533
transcript_42740.nic	chr17	-	1129	5	ISM	ENSMUSG00000024127.16	ENSMUST00000072406.5	3255	14	-50	14589	-30	0	5prime_fragment	FALSE	canonical	3	23	junction_4	71.3249605678124	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATTTAAAAAAAAAATGTG	NA	False	NA	NA	False	AATAAA	-38	NA	85397699	85385486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_-_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85397533
transcript_42743.known	chr17	+	1595	11	FSM	ENSMUSG00000071037.7	ENSMUST00000095188.7	1595	11	0	0	0	0	multi-exon	TRUE	canonical	3	62	junction_6	13.9484766193302	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAATTGTTTCAATCTATC	2173	False	NA	10	True	AATAAA	-26	NA	85397979	85766016	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_85398292_85403917_85404091_85421210_85421276_85699000_85699062_85700885_85700941_85702029_85702094_85709853_85709921_85738898_85738974_85746954_85747019_85759623_85759756_85765489
transcript_42752.nic	chr17	+	553	3	ISM	ENSMUSG00000071037.7	ENSMUST00000234822.2	741	4	-8	89125	-8	-52612	5prime_fragment	FALSE	canonical	3	95	junction_2	7	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAGTTTCGCCCTAGTAT	2219	False	NA	NA	False	AATATA	-22	NA	85398025	85421324	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_85398292_85403917_85404091_85421210
transcript_42756.known	chr17	+	376	1	FSM	ENSMUSG00000097803.2	ENSMUST00000181130.2	376	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	193	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGCTCATGTCAAATAACG	NA	False	NA	NA	False	NA	NA	NA	85806060	85806436	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_85806100_85806400
transcript_42759.known	chr17	-	3530	21	FSM	ENSMUSG00000024135.11	ENSMUST00000095187.4	3530	21	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_9	11.0027269347194	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGTGTGCTGTTCATTG	NA	False	NA	-1	True	AATAAA	-15	NA	86452603	86292092	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_86292912_86295752_86295938_86307748_86307902_86308858_86309036_86311274_86311382_86358513_86358597_86365103_86365196_86405939_86406048_86406632_86406724_86410270_86410429_86416654_86416763_86422620_86422725_86427341_86427478_86428077_86428175_86433538_86433678_86435143_86435262_86437541_86437709_86443591_86443964_86446496_86446678_86449787_86449868_86452548
transcript_42761.nic	chr17	-	430	4	ISM	ENSMUSG00000024135.11	ENSMUST00000095187.4	3530	21	-15	151772	-15	-78763	5prime_fragment	FALSE	canonical	3	93	junction_3	4.64279609239471	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGTTCCGAGGGCCAAAAA	NA	False	NA	NA	False	AAAAAG	-10	NA	86452618	86443864	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_-_86443964_86446496_86446678_86449787_86449868_86452548
transcript_42763.known	chr17	+	5516	16	FSM	ENSMUSG00000024140.11	ENSMUST00000024954.11	5516	16	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_3	13.5078577954545	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGCTCGTGCCTCTTGTT	NA	False	NA	10	True	ATTAAA	-15	NA	87061127	87140838	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_87061737_87104543_87104735_87112620_87112773_87113184_87113270_87116785_87116905_87117011_87117218_87125782_87125890_87131107_87131256_87131834_87132050_87133007_87133199_87133932_87134044_87134919_87135426_87136117_87136245_87136413_87136529_87136737_87136912_87138378
transcript_42777.known	chr17	-	988	6	FSM	ENSMUSG00000024145.7	ENSMUST00000024957.7	988	6	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_5	28.3760462362183	2917	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGGCTTCAGATGCTGTT	NA	False	NA	-12	True	AATAAA	-15	NA	87332834	87304683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_87304996_87316230_87316340_87327828_87327946_87329286_87329379_87331092_87331342_87332725
transcript_4278.known	chr1	+	2993	10	FSM	ENSMUSG00000041782.15	ENSMUST00000038760.10	2993	10	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_3	17.5119007154183	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTTCACATAAACTCCGT	5618	False	NA	NA	False	NA	NA	NA	135746335	135761080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_135746755_135753492_135753631_135754901_135755785_135756452_135756558_135757426_135757471_135758637_135758711_135758820_135758959_135759262_135759350_135759611_135759687_135760049
transcript_42792.nnic	chr17	-	898	5	NIC	ENSMUSG00000024145.7	novel	988	6	NA	NA	-21	-2	combination_of_known_splicesites	FALSE	canonical	3	23	junction_1	138.539705499904	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTGGCTTCAGATGCTG	NA	False	NA	-14	True	AATAAA	-13	NA	87332855	87304685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_-_87304996_87327828_87327946_87329286_87329379_87331092_87331342_87332725
transcript_428.known	SIRV5	+	533	6	FSM	SIRV5A	SIRV507	533	6	0	0	0	0	multi-exon	FALSE	canonical	3	3871	junction_1	2708.37786137754	14902	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCGTAAGTGGTCAAGCCAC	NA	False	NA	NA	False	NA	NA	NA	1027	3598	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV5_+_1150_1925_2034_2119_2157_2270_2316_3298_3405_3483
transcript_4280.known	chr1	+	1097	15	FSM	ENSMUSG00000026414.14	ENSMUST00000179863.8	1097	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	7.82362982722658	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATATGGAATAGTGTTTCT	793	False	NA	1	True	AATAAA	-16	NA	135768612	135779998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_135768651_135769638_135769650_135769752_135769765_135771522_135771553_135773292_135773383_135773635_135773672_135774459_135774494_135775446_135775511_135775718_135775836_135776548_135776627_135777087_135777199_135778448_135778559_135779089_135779181_135779433_135779475_135779764
transcript_42801.known	chr17	+	763	5	FSM	ENSMUSG00000024146.10	ENSMUST00000160269.2	763	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	278.799210902757	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGAATGAGCAGCACCTTA	NA	False	NA	NA	False	NA	NA	NA	87333038	87342900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_87333082_87335126_87335193_87338435_87338491_87341683_87341788_87342405
transcript_4281.known	chr1	+	1094	14	FSM	ENSMUSG00000026414.14	ENSMUST00000112086.3	1094	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	7.87024957687918	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATATGGAATAGTGTTTCT	793	False	NA	1	True	AATAAA	-16	NA	135768612	135779998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_135768651_135771511_135771553_135773292_135773383_135773635_135773672_135774459_135774494_135775446_135775511_135775718_135775836_135776548_135776627_135777087_135777199_135778116_135778126_135778448_135778559_135779089_135779181_135779433_135779475_135779764
transcript_42813.known	chr17	+	1184	5	FSM	ENSMUSG00000024146.10	ENSMUST00000024959.10	1184	5	0	0	0	0	multi-exon	FALSE	canonical	3	592	junction_4	35.4427355039083	3529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTTGTGTCTTCAATGAT	NA	False	NA	4	True	AATAAA	-14	NA	87332977	87343238	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_87333104_87335126_87335193_87338435_87338491_87341683_87341788_87342405
transcript_42815.nic	chr17	-	800	2	ISM	ENSMUSG00000117384.2	ENSMUST00000234580.2	1396	4	1834	0	1834	0	intron_retention	FALSE	canonical	2	5	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGAAGGTGGTCTGGAC	NA	False	NA	NA	False	NA	NA	NA	87500536	87499643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_-_87499956_87500048
transcript_42820.known	chr17	-	813	5	FSM	ENSMUSG00000024150.13	ENSMUST00000129616.8	813	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	139.054620563288	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGCCACATGACTGTGG	NA	False	NA	NA	False	NA	NA	NA	87573308	87563215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_87563486_87564574_87564735_87565355_87565518_87566177_87566310_87573219
transcript_42821.known	chr17	-	603	5	FSM	ENSMUSG00000024150.13	ENSMUST00000151155.8	603	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	129.331695651143	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGCTACATCGACTACGCT	NA	False	NA	NA	False	NA	NA	NA	87573323	87563397	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_87563486_87564574_87564735_87565355_87565518_87566177_87566310_87573262
transcript_42824.known	chr17	-	2017	5	FSM	ENSMUSG00000024150.13	ENSMUST00000144236.9	2017	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	147.031246679065	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTGACGTTGACTC	NA	False	NA	-2	True	AATAAA	-17	NA	87573332	87562085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_87563486_87564574_87564735_87565355_87565518_87571568_87571794_87573262
transcript_42827.known	chr17	-	2038	4	FSM	ENSMUSG00000024150.13	ENSMUST00000024963.11	2038	4	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_3	69.8108555710038	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTCCGGCTGGATTCTGG	NA	False	NA	NA	False	AATGAA	-18	NA	87573363	87561870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_87563486_87564574_87564735_87565355_87565518_87573262
transcript_42829.nnic	chr17	-	1799	4	NNC	ENSMUSG00000024150.13	novel	2017	5	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	147.196769288218	293	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTGACGTTGACTC	NA	False	NA	-2	True	AATAAA	-17	NA	87573387	87562085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_87563486_87564574_87564735_87565355_87565518_87573310
transcript_42832.known	chr17	+	868	1	FSM	ENSMUSG00000036918.17	ENSMUST00000234468.2	868	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTAGACCGATGCGTTT	NA	False	NA	NA	False	AATAAA	-26	NA	87590375	87591243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_87590400_87591200
transcript_42833.known	chr17	-	591	5	FSM	ENSMUSG00000036557.9	ENSMUST00000186211.2	591	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.866025403784439	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGACTTGATGCTTGCTC	NA	False	NA	NA	False	AGTAAA	-16	NA	87735136	87718632	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_87718712_87718955_87719021_87729941_87730200_87733070_87733131_87735007
transcript_42835.known	chr17	-	842	5	FSM	ENSMUSG00000036438.15	ENSMUST00000234406.2	842	5	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_4	3004.56365384393	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCGTGGACTGTGGACAGT	NA	False	NA	-135	True	NA	NA	NA	87754284	87741092	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_87741484_87742503_87742640_87743031_87743139_87743218_87743363_87754220
transcript_42837.known	chr17	-	1205	6	FSM	ENSMUSG00000036438.15	ENSMUST00000040440.7	1205	6	0	0	0	0	multi-exon	FALSE	canonical	3	6557	junction_1	335.908082665482	6139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGCTCTGAATCTGAGT	NA	False	NA	-5	True	AATAAA	-21	NA	87754363	87740839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_87741484_87742503_87742640_87743031_87743139_87743218_87743363_87750123_87750155_87754220
transcript_42838.known	chr17	-	403	4	FSM	ENSMUSG00000036438.15	ENSMUST00000238271.2	403	4	0	0	0	0	multi-exon	FALSE	canonical	3	7253	junction_2	129.177741460706	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATTCCGTGTGTTTGATA	NA	False	NA	NA	False	AAGAAA	-37	NA	87754363	87743053	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_87743139_87743218_87743363_87750123_87750155_87754220
transcript_42839.nnic	chr17	-	816	3	NNC	ENSMUSG00000117361.2	novel	423	2	NA	NA	-922	1	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	0.5	24	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATTGTTTGATCTGTTC	NA	False	NA	NA	False	ATTAAA	-12	NA	87839094	87836929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_87837291_87838534_87838682_87838786
transcript_42840.nnic	chr17	-	719	3	NNC	ENSMUSG00000117361.2	novel	423	2	NA	NA	-922	-96	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	0.5	25	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGTTTAGAGATTCTGG	NA	False	NA	NA	False	AATAAA	-19	NA	87839094	87837026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_-_87837291_87838534_87838682_87838786
transcript_42843.known	chr17	+	1745	9	FSM	ENSMUSG00000045394.10	ENSMUST00000234623.2	1745	9	0	0	0	0	multi-exon	FALSE	canonical	3	196	junction_4	21.0535032714273	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACGTGGGTAAGTCTTGT	NA	False	NA	NA	False	NA	NA	NA	87944109	87958557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_87944323_87947323_87947432_87947715_87947957_87948861_87948928_87949529_87949594_87950969_87951072_87953564_87953769_87957041_87957087_87957855
transcript_42847.known	chr17	+	3283	16	FSM	ENSMUSG00000024151.14	ENSMUST00000024967.14	3283	16	0	0	0	0	multi-exon	FALSE	canonical	3	1624	junction_8	132.693531618287	2524	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGGGGTACCTTGTATT	4661	False	NA	19	True	AATAAA	-16	NA	87979757	88031141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026028_88026234_88026715_88026964_88028310_88028487_88030758
transcript_4286.known	chr1	+	1806	6	FSM	ENSMUSG00000026411.18	ENSMUST00000063719.15	1806	6	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_1	45.0759359303831	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTCTAAGCAAAACCCAGAT	NA	False	NA	NA	False	ATTAAA	-18	NA	135945704	135963080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_135945801_135946243_135946346_135947395_135947488_135952355_135952465_135955134_135955267_135961805
transcript_42864.nic	chr17	+	1592	8	ISM	ENSMUSG00000024151.14	ENSMUST00000173097.8	2502	10	-72	12705	-51	0	5prime_fragment	FALSE	canonical	3	1629	junction_6	24.7732574707947	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGTTTGTATTTTTTTG	4820	False	NA	NA	False	ATTAAA	-16	NA	87979916	88004131	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922
transcript_42870.known	chr17	+	1752	2	FSM	ENSMUSG00000024151.14	ENSMUST00000174240.2	1752	2	0	0	0	0	multi-exon	FALSE	canonical	3	1709	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4871	False	NA	NA	False	AATAGA	-20	NA	87979967	87987120	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_87980235_87985635
transcript_42871.known	chr17	+	409	2	FSM	ENSMUSG00000024151.14	ENSMUST00000172596.2	409	2	0	0	0	0	multi-exon	FALSE	canonical	3	1656	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGTTTGTATTTTTTTG	9859	False	NA	NA	False	ATTAAA	-16	NA	87996369	88004131	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_87996570_88003922
transcript_42872.known	chr17	+	4251	10	FSM	ENSMUSG00000005370.5	ENSMUST00000005503.5	4251	10	0	0	0	0	multi-exon	FALSE	canonical	3	2207	junction_2	252.867310151411	994	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTTTTCCATTTTCTTTC	NA	False	NA	31	True	AATAAA	-20	NA	88282489	88298320	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_88282834_88287618_88287819_88290872_88291043_88291873_88294410_88295613_88295883_88296571_88296690_88296854_88296945_88297621_88297777_88297858_88298059_88298151
transcript_42873.known	chr17	-	1055	2	FSM	ENSMUSG00000097676.2	ENSMUST00000180785.2	1055	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAGTCCTAGGTAT	NA	False	NA	NA	False	NA	NA	NA	88467189	88453511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_88454488_88467110
transcript_42874.nnic	chr17	+	693	4	NNC	ENSMUSG00000117369.2	novel	725	2	NA	NA	-9741	1403	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1.4142135623731	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAAGCCTAAAATTCATT	NA	False	NA	NA	False	NA	NA	NA	88466173	88479435	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_88466247_88476260_88476347_88477739_88477948_88479109
transcript_42875.known	chr17	-	3806	5	FSM	ENSMUSG00000117497.2	ENSMUST00000234143.2	3806	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.82915619758885	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAGGAAAAAGCATACATAT	NA	False	NA	NA	False	NA	NA	NA	88614315	88601932	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_88603707_88607975_88608096_88611840_88611905_88611982_88612137_88612621
transcript_42879.known	chr17	+	5085	6	FSM	ENSMUSG00000034998.19	ENSMUST00000112238.9	5085	6	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_4	10.9288608738514	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTTTGTTATTTGTGAG	NA	False	NA	15	True	AATAAA	-19	NA	88748138	88797961	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_88748313_88770140_88770692_88783283_88783379_88786703_88786769_88791828_88791898_88793830
transcript_42880.known	chr17	+	2892	3	FSM	ENSMUSG00000034998.19	ENSMUST00000134107.2	2892	3	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_2	4.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TCAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	88748185	88785497	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_88748313_88770140_88770692_88783283
transcript_42883.nic	chr17	+	504	2	ISM	ENSMUSG00000034998.19	ENSMUST00000134107.2	2892	3	-42	15022	5	10	5prime_fragment	FALSE	canonical	3	288	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCAACTTCAAAGCCCCC	NA	False	NA	NA	False	NA	NA	NA	88748143	88770475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_+_88748313_88770140
transcript_42884.known	chr17	+	3141	22	FSM	ENSMUSG00000034709.9	ENSMUST00000038551.8	3141	22	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_5	9.91871727497827	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCGGTCTGTGACAGTG	NA	False	NA	16	True	AATAAA	-17	NA	88837545	88895795	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_88837747_88850272_88850342_88852748_88852896_88854995_88855098_88856921_88857087_88857218_88857278_88858089_88858185_88862277_88862331_88863009_88863160_88866016_88866119_88866204_88866294_88869536_88869674_88873068_88873162_88876507_88876636_88880030_88880184_88882619_88882713_88884565_88884809_88886209_88886243_88887862_88887980_88889842_88889942_88891280_88891410_88895111
transcript_42885.known	chr17	+	695	2	FSM	ENSMUSG00000034709.9	ENSMUST00000189734.2	695	2	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTGAATGGATAGGTTAA	NA	False	NA	NA	False	AATAAA	-11	NA	88837643	88850864	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_88837747_88850272
transcript_42887.nnic	chr17	-	805	4	Antisense	novelGene_ENSMUSG00000033855.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	25	junction_2	14.6590889515307	109	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGGCCTCCTTTGATGCC	NA	False	NA	NA	False	TATAAA	-13	NA	88932975	88923786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr17_-_88924018_88928723_88928829_88930105_88930383_88932783
transcript_42890.nnic	chr17	-	660	4	Antisense	novelGene_ENSMUSG00000033855.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	25	junction_2	14.6590889515307	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTCTCACCGCCCCCA	NA	False	NA	NA	False	AATGAA	-20	NA	88932975	88923931	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr17_-_88924018_88928723_88928829_88930105_88930383_88932783
transcript_42893.nnic	chr17	-	517	3	Antisense	novelGene_ENSMUSG00000033855.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	13	junction_2	9.5	69	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGGCCTCCTTTGATGCC	NA	False	NA	NA	False	TATAAA	-13	NA	88932964	88923786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr17_-_88924018_88928723_88928829_88932783
transcript_42897.nnic	chr17	-	372	3	Antisense	novelGene_ENSMUSG00000033855.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	13	junction_2	9.5	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTCTCACCGCCCCCA	NA	False	NA	NA	False	AATGAA	-20	NA	88932964	88923931	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr17_-_88924018_88928723_88928829_88932783
transcript_4290.known	chr1	+	847	6	FSM	ENSMUSG00000026411.18	ENSMUST00000117950.2	847	6	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_1	164.577519728546	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTTCCCTTCAAATGCCC	NA	False	NA	-54	True	GGGGCT	-18	NA	135945799	135962030	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_135945987_135946243_135946346_135947395_135947488_135952355_135952465_135955134_135955267_135961805
transcript_42900.known	chr17	+	767	2	FSM	ENSMUSG00000033855.16	ENSMUST00000137138.2	767	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACTACATCTGCGAGAAGC	NA	False	NA	NA	False	NA	NA	NA	88905111	88943257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_88905170_88942548
transcript_42902.known	chr17	+	1621	9	FSM	ENSMUSG00000024154.12	ENSMUST00000024970.11	1621	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.82915619758885	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCACACATTTACAACATAGT	NA	False	NA	NA	False	AATAAA	-19	NA	88976087	89022580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_88976160_88978621_88978724_88978926_88979048_88997414_88997471_88999145_88999231_89001530_89002097_89018868_89019127_89019783_89019874_89022309
transcript_42907.known	chr17	-	1988	1	FSM	ENSMUSG00000066878.6	ENSMUST00000086423.6	1988	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2777	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAACTTTGAGATG	NA	False	NA	NA	False	AATAAA	-34	NA	90217877	90215889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_90215900_90217900
transcript_42908.nnic	chr17	+	517	3	NNC	ENSMUSG00000024256.8	novel	2011	3	NA	NA	251	-1300	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_1	1	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTTTTTCTTTTTATGA	NA	False	NA	NA	False	ATTAAA	-19	NA	93509754	93511691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_93509847_93510212_93510312_93511365
transcript_42913.known	chr17	+	313	1	FSM	ENSMUSG00000117476.2	ENSMUST00000234959.2	313	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	858	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGAACCCTCCCCCAATA	NA	False	NA	NA	False	NA	NA	NA	94915612	94915925	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_94915600_94915900
transcript_42920.known	chr17	-	2560	8	FSM	ENSMUSG00000055660.10	ENSMUST00000171284.3	2560	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_6	27.8948462799061	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTTATAGTGAGTCTCT	NA	False	NA	NA	False	AATATA	-16	NA	95057447	95034512	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_95034824_95040516_95040609_95040974_95041082_95042763_95042939_95046881_95046952_95047813_95048184_95055044_95055846_95056813
transcript_42931.nnic	chr17	+	1287	10	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-51	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_6	46.65343727826	65	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGGTGTCCCCTCCCAT	NA	False	NA	NA	False	AATAAA	-14	NA	95057476	95082560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_95057661_95062638_95062734_95063861_95063952_95068925_95069033_95069889_95070049_95071199_95071311_95074284_95074376_95078561_95078667_95079284_95079389_95082319
transcript_42932.nic	chr17	+	1350	10	NIC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-51	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_7	48.1350979465191	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGGTGTCCCCTCCCAT	NA	False	NA	NA	False	AATAAA	-14	NA	95057476	95082560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_95057661_95062638_95062734_95063861_95063952_95068925_95069033_95069889_95070049_95071199_95071353_95074284_95074376_95078540_95078667_95079284_95079389_95082319
transcript_42933.known	chr17	+	1275	10	FSM	ENSMUSG00000098090.9	ENSMUST00000182402.8	1275	10	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_3	42.4223328093547	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGTGGGTGTCCCCTCC	NA	False	NA	NA	False	AATAAA	-11	NA	95057527	95082557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_95057661_95062638_95062734_95063861_95063952_95068925_95069033_95069889_95070049_95071199_95071353_95074284_95074376_95078561_95078667_95079284_95079389_95082319
transcript_42940.nnic	chr17	+	1222	9	NIC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-51	0	combination_of_known_splicesites	FALSE	canonical	3	24	junction_3	47.0790558528949	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGGTGTCCCCTCCCAT	NA	False	NA	NA	False	AATAAA	-14	NA	95057476	95082560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr17_+_95057661_95062638_95062734_95063861_95063952_95069889_95070049_95071199_95071353_95074284_95074376_95078561_95078667_95079284_95079389_95082319
transcript_42954.known	chr17	+	969	7	FSM	ENSMUSG00000098090.9	ENSMUST00000182475.8	969	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	38.8057842194806	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGGTGTCCCCTCCCAT	NA	False	NA	NA	False	AATAAA	-14	NA	95057565	95082560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_95057661_95069889_95070049_95071199_95071353_95074284_95074376_95078540_95078667_95079284_95079389_95082319
transcript_42958.nnic	chr17	+	672	6	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-34	19018	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	82.110657042798	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCATGGTTCATTTTGA	NA	False	NA	11	True	AATAAA	-16	NA	95057493	95101578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_95057661_95060130_95060304_95062638_95062734_95063861_95063952_95092912_95092936_95101454
transcript_42959.nnic	chr17	+	516	5	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-51	19018	at_least_one_novel_splicesite	FALSE	canonical	3	132	junction_1	29.2232783924049	300	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCATGGTTCATTTTGA	NA	False	NA	11	True	AATAAA	-16	NA	95057476	95101578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_95057661_95062638_95062734_95063861_95063952_95092912_95092936_95101454
transcript_42962.nnic	chr17	+	498	5	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-47	19018	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_4	79.7413788443616	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCATGGTTCATTTTGA	NA	False	NA	11	True	AATAAA	-16	NA	95057480	95101578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_95057661_95063861_95063952_95092912_95092936_95093195_95093277_95101454
transcript_42966.nnic	chr17	+	517	4	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-51	19018	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	78.1280999384984	118	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCATGGTTCATTTTGA	NA	False	NA	11	True	AATAAA	-16	NA	95057476	95101578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_95057661_95062638_95062734_95063861_95063952_95101430
transcript_42967.nnic	chr17	+	493	4	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-51	19018	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	75.4188305398592	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCATGGTTCATTTTGA	NA	False	NA	11	True	AATAAA	-16	NA	95057476	95101578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_95057661_95062638_95062734_95063861_95063952_95101454
transcript_42968.nnic	chr17	+	417	4	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-47	19018	at_least_one_novel_splicesite	FALSE	canonical	3	134	junction_3	26.8493740874697	374	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCATGGTTCATTTTGA	NA	False	NA	11	True	AATAAA	-16	NA	95057480	95101578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_95057661_95063861_95063952_95092912_95092936_95101454
transcript_42971.known	chr17	-	1853	4	FSM	ENSMUSG00000066057.8	ENSMUST00000182639.2	1853	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	25.0377492776186	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTCGGCCTCATTTGGTA	NA	False	NA	NA	False	NA	NA	NA	95142227	95067371	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_95069006_95126322_95126373_95127763_95127825_95142119
transcript_42974.known	chr17	+	799	3	FSM	ENSMUSG00000098090.9	ENSMUST00000182313.8	799	3	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_1	27	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAAATAAATCAACCCAA	NA	False	NA	NA	False	AATACA	-2	NA	95057539	95064444	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_95057661_95062638_95062734_95063861
transcript_42977.nnic	chr17	+	418	3	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-47	19018	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	73	181	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCATGGTTCATTTTGA	NA	False	NA	11	True	AATAAA	-16	NA	95057480	95101578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_95057661_95063861_95063952_95101430
transcript_42978.nnic	chr17	+	394	3	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-47	19018	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	70	43	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCATGGTTCATTTTGA	NA	False	NA	11	True	AATAAA	-16	NA	95057480	95101578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr17_+_95057661_95063861_95063952_95101454
transcript_42979.nic	chr17	-	510	3	ISM	ENSMUSG00000066057.8	ENSMUST00000182639.2	1853	4	-20	58680	-20	14434	5prime_fragment	FALSE	canonical	3	15	junction_2	22	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTAGTCTCCAATATCATA	NA	False	NA	NA	False	NA	NA	NA	95142247	95126051	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr17_-_95126373_95127763_95127825_95142119
transcript_4298.known	chr1	-	2988	10	FSM	ENSMUSG00000041605.17	ENSMUST00000120339.8	2988	10	0	0	0	0	multi-exon	TRUE	canonical	3	39	junction_9	8.93736780097342	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATGAAGGATTCTGTGTGT	NA	False	NA	-13	True	AATAAA	-20	NA	136162002	136141268	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_136142157_136143493_136144179_136147460_136147635_136147868_136148080_136148809_136148864_136153073_136153297_136153889_136154007_136154517_136154643_136155251_136155401_136161640
transcript_42980.known	chr17	-	1741	1	FSM	ENSMUSG00000066057.8	ENSMUST00000234446.2	1741	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAAACAATTAAA	NA	False	NA	NA	False	NA	NA	NA	95142226	95140485	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_-_95140500_95142200
transcript_42982.known	chr17	+	3079	4	FSM	ENSMUSG00000095193.3	ENSMUST00000234295.2	3079	4	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_3	17.6635217326557	287	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTCGTCATGGTATC	NA	False	NA	NA	False	NA	NA	NA	95172345	95185749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr17_+_95172441_95181413_95181541_95181729_95181791_95182953
transcript_42983.known	chr18	-	2931	9	FSM	ENSMUSG00000063889.17	ENSMUST00000025069.11	2931	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	26.8514431641951	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGCCTGTGTGTATGTCT	-20	True	NA	-2	True	TATAAA	-17	NA	3337589	3266355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_3268130_3273421_3273579_3287903_3288093_3295039_3295183_3295321_3295417_3299161_3299309_3325360_3325479_3327493_3327592_3337379
transcript_42990.known	chr18	-	2530	8	FSM	ENSMUSG00000063889.17	ENSMUST00000154135.8	2530	8	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_6	26.1338782394947	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGCCTGTGTGTATGTCT	-5	True	NA	-2	True	TATAAA	-17	NA	3337488	3266355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_3268130_3273421_3273579_3276693_3276730_3295039_3295183_3295321_3295417_3325360_3325479_3327493_3327592_3337379
transcript_42998.known	chr18	-	1996	8	FSM	ENSMUSG00000063889.17	ENSMUST00000154470.8	1996	8	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_6	25.7428412874535	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTTAGGAAAGGGTGAT	NA	False	NA	NA	False	AATAAA	-21	NA	3337748	3267260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_3268130_3273421_3273579_3295039_3295183_3295321_3295417_3299161_3299309_3325360_3325479_3327493_3327592_3337379
transcript_43.known	ERCC-00085	+	828	1	FSM	ERCC-00085A	DQ883669	828	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	828	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00085_+_0_800
transcript_4300.known	chr1	+	2166	8	FSM	ENSMUSG00000026404.13	ENSMUST00000027655.8	2166	8	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	8.75750407085377	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTATTTATTTCAGTCCT	NA	False	NA	10	True	AATAAA	-16	NA	136343008	136367896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_136343162_136344319_136345135_136347147_136347316_136352532_136352623_136360049_136360302_136361450_136361604_136362243_136362373_136367490
transcript_4301.nnic	chr1	+	2034	7	NIC	ENSMUSG00000026404.13	novel	2166	8	NA	NA	1	-2	combination_of_known_splicesites	FALSE	canonical	2	4	junction_6	23.4004985701872	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCGTTATTTATTTCAGTC	NA	False	NA	8	True	AATAAA	-14	NA	136343009	136367894	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_136343162_136344319_136345135_136347147_136347316_136352532_136352623_136360049_136360302_136361450_136361604_136367490
transcript_43021.known	chr18	-	1256	5	FSM	ENSMUSG00000063889.17	ENSMUST00000142690.2	1256	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	27.3072792493137	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTAGTCTTGTGCATTT	-5	True	NA	-6	True	AATAAA	-12	NA	3337574	3294481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_3295183_3295321_3295417_3299161_3299309_3325360_3325479_3337379
transcript_4303.known	chr1	+	1364	2	FSM	ENSMUSG00000026404.13	ENSMUST00000129218.7	1364	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCACGGTATATTCTTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	136343008	136345530	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_136343162_136344319
transcript_43035.known	chr18	-	1422	4	FSM	ENSMUSG00000063889.17	ENSMUST00000149803.8	1422	4	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	16.5797734872612	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTGTATGGAAGATCTT	-20	True	NA	NA	False	ATTAAA	-14	NA	3337589	3294183	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_3295183_3295321_3295417_3325360_3325479_3337379
transcript_43038.known	chr18	-	1458	3	FSM	ENSMUSG00000063889.17	ENSMUST00000140912.8	1458	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	24	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTACTATGTATGTAGTATG	8	True	NA	NA	False	NA	NA	NA	3337513	3266962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_3268130_3273421_3273579_3337379
transcript_43040.known	chr18	+	1436	2	FSM	ENSMUSG00000097746.3	ENSMUST00000181558.3	1436	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAAACTTCAGACTCA	NA	False	NA	NA	False	NA	NA	NA	3336679	3366863	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_3337179_3365926
transcript_43041.known	chr18	-	764	6	FSM	ENSMUSG00000063889.17	ENSMUST00000130599.8	764	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	27.3685951411467	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTATGGCTTTTTCCTTT	NA	False	NA	NA	False	AATATA	-11	NA	3325474	3267513	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_3267733_3273421_3273579_3276693_3276730_3295039_3295183_3295321_3295417_3325360
transcript_43042.nic	chr18	+	2861	21	NIC	ENSMUSG00000024231.16	novel	3727	20	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	200	junction_1	171.970666103263	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATAAAAAAAAAAAAAAAT	-41	True	NA	72	True	ATTAAA	-28	NA	3382981	3435385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr18_+_3383173_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
transcript_43043.known	chr18	+	3828	21	FSM	ENSMUSG00000024231.16	ENSMUST00000162301.8	3828	21	0	0	0	0	multi-exon	FALSE	canonical	3	782	junction_1	80.8420682565705	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCAATTGTCAAGAAATGT	-12	True	NA	5	True	ATTAAA	-17	NA	3383231	3436377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_3383398_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
transcript_43044.known	chr18	+	2799	21	FSM	ENSMUSG00000024231.16	ENSMUST00000080089.11	2799	21	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	205.086591468092	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATAAAAAAAAAAAAAAAT	-19	True	NA	72	True	ATTAAA	-28	NA	3383224	3435385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_3383398_3399845_3399987_3405684_3405788_3414173_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
transcript_43045.known	chr18	+	5074	3	FSM	ENSMUSG00000024232.3	ENSMUST00000025075.3	5074	3	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_2	19.5	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTGATTTCCCAATTGAT	-8	True	NA	NA	False	ATTAAA	-18	NA	3507922	3516404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_3508286_3511256_3511545_3511981
transcript_4305.nic	chr1	-	1208	2	ISM	ENSMUSG00000097403.3	ENSMUST00000181746.2	2097	3	294	931	269	-4	5prime_fragment	FALSE	canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATGTTTTGTTTATAGG	3146	False	NA	NA	False	NA	NA	NA	136342963	136340584	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_136341416_136342586
transcript_43064.known	chr18	-	619	1	FSM	ENSMUSG00000073647.5	ENSMUST00000097690.5	619	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATAATGACCACTGCTCA	396	False	NA	NA	False	AGTAAA	-17	NA	4198938	4198319	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_4198300_4198900
transcript_43065.known	chr18	-	2569	8	FSM	ENSMUSG00000024235.12	ENSMUST00000025078.10	2569	8	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	7.63450812336422	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTTGGGATTGTATATT	406	False	NA	NA	False	AATAAA	-26	NA	4353015	4331326	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_4332437_4333817_4334065_4334616_4334770_4339496_4339604_4340546_4340809_4343021_4343190_4348980_4349339_4352851
transcript_43066.known	chr18	-	2048	2	FSM	ENSMUSG00000024235.12	ENSMUST00000172805.2	2048	2	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	0	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACTAAAAATAAAATTATG	406	False	NA	NA	False	NA	NA	NA	4353015	4347454	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_4349339_4352851
transcript_43069.known	chr18	+	2626	9	FSM	ENSMUSG00000024234.8	ENSMUST00000234422.2	2626	9	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	58.5340445809103	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGTGATAACAGTATTTC	-8	True	NA	15	True	AATAAA	-16	NA	4375595	4397328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_4375779_4379568_4379742_4380672_4380888_4383188_4383414_4386170_4386383_4386952_4387180_4394973_4395067_4395155_4395230_4396104
transcript_43084.known	chr18	+	845	4	FSM	ENSMUSG00000117401.2	ENSMUST00000235048.2	845	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.24721912892465	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGATCTACTAGTATAATT	12	False	NA	NA	False	AATAAA	-12	NA	4353557	4368920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_4353824_4354100_4354193_4367858_4368041_4368615
transcript_43085.known	chr18	+	922	4	FSM	ENSMUSG00000024234.8	ENSMUST00000235025.2	922	4	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_3	82.9471049658891	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGCTAGTGATTATTTC	-1	True	NA	NA	False	ATTAAA	-11	NA	4375602	4383523	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_4375779_4379568_4379742_4380653_4380888_4383184
transcript_43087.known	chr18	+	6782	4	FSM	ENSMUSG00000033960.7	ENSMUST00000037029.7	6782	4	0	0	0	0	multi-exon	TRUE	canonical	3	21	junction_2	13.6950923894494	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTTTGGTATTGTGTCTT	NA	False	NA	14	True	AATAAA	-19	NA	4634877	4682869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_4635032_4649074_4649406_4672514_4676168_4680225
transcript_43091.nic	chr18	+	605	4	ISM	ENSMUSG00000024236.19	ENSMUST00000126977.8	7907	38	-63	72646	-63	-232	5prime_fragment	FALSE	canonical	3	35	junction_1	20.6774165590278	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAAAGTATTTTGTGGTGC	NA	False	NA	NA	False	AAGAAA	-42	NA	4920476	5046645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_+_4920875_5037107_5037166_5040147_5040240_5046588
transcript_43093.known	chr18	-	3211	5	FSM	ENSMUSG00000050945.9	ENSMUST00000063989.7	3211	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	5.40832691319598	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTTGTTGTTTTCTTAA	362	False	NA	NA	False	CATAAA	-17	NA	5334439	5210028	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_5211199_5213118_5214920_5245385_5245454_5288860_5288939_5334345
transcript_43094.known	chr18	-	3112	5	FSM	ENSMUSG00000050945.9	ENSMUST00000234241.2	3112	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	6.20483682299543	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTATTAGTCTCTGGT	-6	True	NA	NA	False	TATAAA	-18	NA	5334807	5210123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_5211199_5213118_5214920_5245385_5245454_5288860_5288939_5334717
transcript_43101.known	chr18	-	953	3	FSM	ENSMUSG00000050945.9	ENSMUST00000234411.2	953	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	4.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATTAGATAATTCACCCAC	388	False	NA	NA	False	NA	NA	NA	5334413	5244646	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_5245454_5288860_5288939_5334345
transcript_43102.nnic	chr18	+	984	4	Antisense	novelGene_ENSMUSG00000063087.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	1.24721912892465	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTATCTCAGTGTTTATA	NA	False	NA	NA	False	AATAAA	-32	NA	5522990	5572041	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr18_+_5523233_5524111_5524174_5571265_5571319_5571414
transcript_43105.known	chr18	+	5801	8	FSM	ENSMUSG00000024238.16	ENSMUST00000025081.13	5801	8	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_5	9.45666809339164	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTTGTTGTGATGTGTG	427	False	NA	NA	False	AATAAA	-19	NA	5591863	5775467	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_5591968_5705042_5705244_5748693_5748856_5758964_5759168_5761327_5761434_5766220_5768026_5770383_5770565_5772428
transcript_43107.known	chr18	-	2718	19	FSM	ENSMUSG00000041225.17	ENSMUST00000062584.14	2718	19	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_12	55.2999955350164	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGGGCCCTCATTTGCT	170	False	NA	NA	False	NA	NA	NA	6135892	6026431	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6056978_6056994_6057516_6057592_6061846_6061973_6064340_6064422_6069830_6070092_6111684_6112440_6115813_6115851_6135803
transcript_43112.nic	chr18	-	1075	3	ISM	ENSMUSG00000041225.17	ENSMUST00000182383.8	2500	17	-122	85053	-40	-42955	5prime_fragment	FALSE	canonical	3	136	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTTGTTTTGCTTTATG	52	False	NA	NA	False	AATAAA	-35	NA	6136010	6111608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_-_6112440_6115813_6115851_6135803
transcript_43115.known	chr18	-	6032	26	FSM	ENSMUSG00000006740.15	ENSMUST00000025083.14	6032	26	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_8	215.348105169282	417	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATGACGTATTAGCTTG	-5	True	NA	0	True	AATAAA	-42	NA	6241523	6201001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_6203708_6208186_6208336_6208999_6209217_6210699_6210805_6211023_6211096_6211191_6211253_6212516_6212619_6213186_6213297_6213392_6213455_6213969_6214088_6214511_6214701_6216222_6216367_6216740_6216948_6220223_6220293_6220801_6220996_6222718_6222868_6223545_6223692_6223970_6224076_6225317_6225443_6225596_6225685_6225767_6225824_6226381_6226431_6226863_6226969_6227587_6227662_6234814_6234903_6240981
transcript_43116.known	chr18	+	523	3	FSM	ENSMUSG00000117519.2	ENSMUST00000234972.2	523	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGCTTTTTGGTCATGG	NA	False	NA	NA	False	NA	NA	NA	6240813	6268387	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_6241164_6267754_6267830_6268289
transcript_43117.known	chr18	+	411	1	FSM	ENSMUSG00000073640.4	ENSMUST00000097682.4	411	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	118452	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATATTTTTGTTTTGGTCA	33	False	NA	NA	False	NA	NA	NA	6332631	6333042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_6332600_6333000
transcript_43118.known	chr18	-	3965	14	FSM	ENSMUSG00000024240.14	ENSMUST00000028100.13	3965	14	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_13	6.05888266692776	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGTGCAGTGGTCTTTGCC	-18	True	NA	-1	True	AATAAA	-27	NA	6490856	6435952	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_6437308_6439591_6439956_6440048_6440191_6441121_6441244_6448904_6449258_6450068_6450218_6450296_6450387_6450465_6450640_6452232_6452393_6453508_6453658_6454186_6454394_6455188_6455335_6462831_6462992_6490462
transcript_4312.nnic	chr1	+	357	3	Antisense	novelGene_ENSMUSG00000097229.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	42	junction_2	3.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGTAAAAGCTATCTGTAA	NA	False	NA	NA	False	AATAAA	-39	NA	136494384	136552180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr1_+_136494541_136551065_136551108_136552021
transcript_43121.nnic	chr18	-	746	2	NNC	ENSMUSG00000024240.14	novel	565	2	NA	NA	825	267	at_least_one_novel_splicesite	TRUE	canonical	2	3	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATCTTGTCTTTTTGTTTT	882	False	NA	NA	False	ATTAAA	-16	NA	6490031	6488892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_-_6489331_6489723
transcript_43122.known	chr18	-	565	2	FSM	ENSMUSG00000024240.14	ENSMUST00000050542.6	565	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGGTTATTTAACCTTTTA	-18	True	NA	NA	False	AATAAA	-15	NA	6490856	6489159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_6489331_6490462
transcript_43123.nnic	chr18	-	479	2	NNC	ENSMUSG00000024240.14	novel	565	2	NA	NA	825	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGGTTATTTAACCTTTTA	882	False	NA	NA	False	AATAAA	-15	NA	6490031	6489159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_-_6489331_6489723
transcript_43128.known	chr18	-	3650	7	FSM	ENSMUSG00000061013.7	ENSMUST00000079788.7	3650	7	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_4	2.3392781412697	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAGTGATCATATGGGAT	NA	False	NA	NA	False	AATAAA	-15	NA	7004780	6934517	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_6937055_6937167_6937202_6992037_6992374_6992777_6992935_7000592_7000753_7002356_7002624_7004621
transcript_43129.known	chr18	-	4981	17	FSM	ENSMUSG00000057440.9	ENSMUST00000115869.4	4981	17	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_16	22.8061635035356	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGCTTTCAAGATTATTG	-22	True	NA	NA	False	ATTAAA	-20	NA	7626866	7347958	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_7351145_7353153_7353298_7355017_7355127_7356141_7356236_7379988_7380070_7403185_7403357_7439568_7439634_7440082_7440280_7440431_7440507_7441552_7441639_7442792_7442875_7443973_7444106_7458931_7459013_7461637_7461716_7512943_7513063_7561725_7561873_7626732
transcript_43133.nic	chr18	-	1269	12	ISM	ENSMUSG00000057440.9	ENSMUST00000235093.2	3786	13	-60	4324	-24	9	5prime_fragment	FALSE	canonical	3	86	junction_11	9.14529188360676	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAAGTCCATGTATGAA	NA	False	NA	NA	False	AAGAAA	-2	NA	7626890	7403311	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_-_7403357_7439568_7439634_7440082_7440280_7440431_7440507_7441552_7441639_7442792_7442875_7443973_7444106_7458931_7459013_7461637_7461716_7512943_7513063_7561725_7561873_7626728
transcript_43136.known	chr18	-	675	2	FSM	ENSMUSG00000057440.9	ENSMUST00000234366.2	675	2	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAATCGG	-22	True	NA	NA	False	NA	NA	NA	7626866	7561335	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_7561873_7626728
transcript_43137.known	chr18	-	1784	13	FSM	ENSMUSG00000057440.9	ENSMUST00000234571.2	1784	13	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_12	25.7265265177145	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAGTGCTCGTATTTTCC	-17	True	NA	NA	False	AATAAA	-27	NA	7626861	7379647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_7380070_7403185_7403357_7439568_7439634_7440082_7440280_7440431_7440507_7441552_7441639_7442792_7442875_7443973_7444106_7458931_7459013_7461637_7461716_7512943_7513063_7561725_7561873_7626732
transcript_43139.known	chr18	+	3070	14	FSM	ENSMUSG00000024283.16	ENSMUST00000074919.11	3070	14	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_1	117.532571338518	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAACACATTTTGTTAC	7	True	NA	NA	False	AATAAA	-8	NA	7868849	7927067	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_7869092_7869990_7870028_7871548_7871745_7901495_7901603_7905399_7905516_7905931_7906045_7910515_7910825_7916051_7916298_7917552_7917676_7918432_7918582_7920131_7920251_7921421_7921609_7921855_7921984_7926069
transcript_4314.known	chr1	+	4933	2	FSM	ENSMUSG00000041483.15	ENSMUST00000047734.15	4933	2	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_1	0	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGATATCACTTAGTCTCT	NA	False	NA	16	True	AATAAA	-29	NA	136552638	136557791	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_136552790_136553009
transcript_43141.known	chr18	+	2205	13	FSM	ENSMUSG00000024283.16	ENSMUST00000171042.8	2205	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	207.122397388597	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAATTGGGGGGGGGGGTT	-11	True	NA	NA	False	AAAAAG	-8	NA	7868831	7926505	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_7869092_7869990_7870028_7871548_7871745_7901495_7901603_7905399_7905516_7905931_7906045_7916051_7916298_7917564_7917676_7918432_7918582_7920131_7920251_7921421_7921609_7921855_7921984_7926069
transcript_43143.nic	chr18	+	1014	4	ISM	ENSMUSG00000024283.16	ENSMUST00000171486.8	1608	13	-243	24132	-9	-3485	5prime_fragment	TRUE	canonical	3	146	junction_1	199.474866141633	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTTAATCAAATATGTGC	339	False	NA	NA	False	NA	NA	NA	7868822	7902007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_+_7869092_7869990_7870028_7871548_7871745_7901495
transcript_43146.nnic	chr18	-	488	3	Antisense	novelGene_ENSMUSG00000117644.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	0.5	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACCTGTAGTATGTCCTC	7068	False	NA	NA	False	AATATA	-16	NA	9308307	9304912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr18_-_9305145_9306080_9306214_9308184
transcript_43148.known	chr18	+	8024	10	FSM	ENSMUSG00000036103.10	ENSMUST00000234965.2	8024	10	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_7	3.52066211505664	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTATCTGTGTTCTAAAT	0	True	NA	NA	False	NA	NA	NA	9707594	9882644	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_9707760_9720920_9720972_9840238_9840362_9846786_9846886_9848103_9849151_9858545_9859035_9859837_9859975_9866743_9866854_9874788_9874935_9876987
transcript_43156.known	chr18	-	4726	16	FSM	ENSMUSG00000047879.18	ENSMUST00000092096.14	4726	16	0	0	0	0	multi-exon	FALSE	canonical	3	792	junction_3	60.9526592255553	586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATGTGTTTTAAGTGA	-60	True	NA	NA	False	NA	NA	NA	10030141	9993065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533_10024680_10029912
transcript_43164.known	chr18	-	2019	15	FSM	ENSMUSG00000047879.18	ENSMUST00000116669.2	2019	15	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_12	235.664107213151	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACACTTGATTATACACT	14	True	NA	-65	True	AATAAA	-15	NA	10030067	9995593	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10022817_10022851_10024533_10024680_10029912
transcript_43170.known	chr18	-	1346	7	FSM	ENSMUSG00000047879.18	ENSMUST00000128334.8	1346	7	0	0	0	0	multi-exon	FALSE	canonical	3	830	junction_4	53.4334996878259	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	0	True	NA	NA	False	NA	NA	NA	10030081	10009352	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533_10024680_10029912
transcript_43173.known	chr18	+	2047	2	FSM	ENSMUSG00000024287.9	ENSMUST00000234805.2	2047	2	0	0	0	0	multi-exon	FALSE	canonical	3	860	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAATGAAAAAAAGAAGA	13	True	NA	NA	False	AATAAA	-1	NA	9958179	9961077	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_9958247_9959097
transcript_43174.known	chr18	-	164	1	FSM	ENSMUSG00000095616.2	ENSMUST00000083435.3	164	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	GAAAAAAAAAAAAAAAAAAA	1	True	NA	NA	False	NA	NA	NA	10151140	10150976	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_10151000_10151100
transcript_43175.nnic	chr18	+	904	2	NNC	ENSMUSG00000042942.19	novel	8420	33	NA	NA	-21239	-4642	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	0	15	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGTCAAAGGCCACTTT	NA	False	NA	NA	False	AATAAA	-2	NA	10532546	10533647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_10532598_10532794
transcript_43176.known	chr18	-	4545	11	FSM	ENSMUSG00000024293.17	ENSMUST00000025142.13	4545	11	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_3	14.2393820090621	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTCACTAGCTTGCAATT	2	True	NA	-6	True	ATTAAA	-21	NA	10610352	10566506	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_10567647_10571954_10572143_10574874_10575019_10577000_10577091_10582054_10582187_10584247_10584363_10585977_10586042_10588438_10588551_10593745_10595876_10596338_10596442_10610025
transcript_43178.known	chr18	-	2148	10	FSM	ENSMUSG00000024293.17	ENSMUST00000115864.8	2148	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	44.3206609568756	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAAGTGATAAATGTACTT	245	False	10610134	-37	True	AATAAA	-25	NA	10610109	10566618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_10567647_10571954_10572143_10574874_10575019_10577000_10577091_10582054_10582187_10584247_10584363_10585977_10586042_10595675_10595876_10596338_10596442_10610025
transcript_43179.known	chr18	-	2088	10	FSM	ENSMUSG00000024293.17	ENSMUST00000097670.10	2088	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	44.9611629391357	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAATGTACTTGATACAAT	5	True	NA	-29	True	AATAAA	-33	NA	10610129	10566610	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_10567647_10571954_10572143_10574874_10575019_10577000_10577091_10582054_10582187_10584247_10584363_10585977_10586042_10588438_10588551_10596338_10596442_10610025
transcript_43184.known	chr18	-	2249	11	FSM	ENSMUSG00000024293.17	ENSMUST00000145320.2	2249	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	42.8836798794133	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATAGCTTTTTCTAAGTGA	245	False	10610134	-48	True	AATAAA	-14	NA	10610109	10566629	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_10567647_10571954_10572143_10574874_10575019_10577000_10577091_10582054_10582187_10584247_10584363_10585977_10586042_10588438_10588551_10595675_10595876_10596338_10596442_10610025
transcript_43190.known	chr18	+	858	4	FSM	ENSMUSG00000002477.6	ENSMUST00000002551.5	858	4	0	0	0	0	multi-exon	FALSE	canonical	3	1823	junction_2	40.4337592722825	13130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGCGGTGCATGTCTTTA	-32	True	NA	8	True	AATAAA	-15	NA	10617774	10628230	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_10617927_10623630_10623708_10626825_10627018_10627793
transcript_43191.known	chr18	+	439	4	FSM	ENSMUSG00000002477.6	ENSMUST00000234207.2	439	4	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	847.378047600689	1550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATAAGTGTAGGGACAGA	-11	True	NA	2	True	NA	NA	NA	10617795	10627955	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_10617927_10623630_10623708_10626948_10627018_10627793
transcript_43192.known	chr18	-	1890	9	FSM	ENSMUSG00000002475.17	ENSMUST00000117726.9	1890	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.03112887414927	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGTTTCTTTGTGAGTT	21	True	NA	NA	False	AATAAA	-13	NA	10706713	10644412	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_10645224_10647725_10647892_10647969_10648019_10652187_10652362_10658779_10658893_10682068_10682115_10704547_10704731_10706000_10706165_10706529
transcript_43193.known	chr18	+	10231	21	FSM	ENSMUSG00000024294.15	ENSMUST00000052838.11	10231	21	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	10.1237344888139	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTATATTTTATCATTG	0	True	NA	NA	False	AATAAA	-18	NA	10725547	10818578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_10726534_10740982_10741155_10743268_10743399_10747355_10747461_10749322_10749390_10751822_10752028_10755503_10755688_10760803_10760949_10763188_10763323_10768123_10768232_10775528_10775727_10778148_10778301_10792894_10793028_10794477_10794565_10795689_10795852_10798351_10798534_10800055_10800249_10802260_10802340_10804686_10804801_10808033_10808135_10811984
transcript_43195.known	chr18	+	3209	19	FSM	ENSMUSG00000041238.17	ENSMUST00000047322.8	3209	19	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	21.3625378803961	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAACTAAAATGTGGATG	3291	False	NA	9	True	ATTAAA	-31	NA	11790485	11875935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_11790750_11793791_11793999_11805638_11805682_11810651_11810748_11826068_11826182_11829799_11829867_11838748_11838925_11848790_11848896_11851889_11851988_11853601_11853715_11854696_11855583_11855660_11855788_11858463_11858553_11860229_11860342_11865246_11865388_11867532_11867603_11871629_11871727_11873982_11874125_11875672
transcript_43213.known	chr18	+	857	4	FSM	ENSMUSG00000041238.17	ENSMUST00000234744.2	857	4	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	16.0277537068951	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAGCAGTCTTCATACAT	3457	False	NA	NA	False	AATATA	-32	NA	11790651	11811160	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_11790750_11793791_11793999_11805638_11805682_11810651
transcript_43215.known	chr18	+	586	5	FSM	ENSMUSG00000041238.17	ENSMUST00000234499.2	586	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	76.9967531782997	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGAGTGAGTTCCCTTTCA	3704	False	NA	NA	False	NA	NA	NA	11790898	11826176	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_11791031_11793791_11793999_11805638_11805682_11810651_11810748_11826068
transcript_43216.known	chr18	-	1426	15	FSM	ENSMUSG00000049411.16	ENSMUST00000209859.2	1426	15	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_4	4.03871569806491	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAACAAGACATGTATGT	NA	False	NA	NA	False	NA	NA	NA	12254587	12116132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_12116651_12126620_12126686_12176270_12176365_12180621_12180692_12191982_12192018_12197260_12197297_12200116_12200163_12201354_12201404_12203136_12203189_12207674_12207701_12217048_12217127_12237155_12237238_12246451_12246530_12251460_12251508_12254437
transcript_43230.known	chr18	+	3790	13	FSM	ENSMUSG00000024404.8	ENSMUST00000025270.8	3790	13	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_8	18.23058327829	484	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGGTGATTGGAGAGAATT	5505	False	NA	NA	False	NA	NA	NA	12261797	12290444	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_12262031_12268908_12269025_12269749_12269896_12269984_12270093_12270296_12270407_12272373_12272518_12275992_12276121_12281847_12282046_12282575_12282736_12285855_12285937_12286027_12286118_12286969_12287078_12288276
transcript_43244.known	chr18	+	2170	20	FSM	ENSMUSG00000024410.16	ENSMUST00000025276.15	2170	20	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_9	24.4724957266604	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAATGTTGCTAACTCCC	NA	False	NA	NA	False	AATAAA	-45	NA	12301773	12323054	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_12301960_12302289_12302367_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722_12313829_12314640_12314753_12317035_12317081_12317265_12317320_12317948_12318078_12318705_12318813_12321265_12321386_12321616_12321695_12321876_12321982_12322069_12322139_12322216_12322443_12322862
transcript_43253.known	chr18	+	2297	19	FSM	ENSMUSG00000024410.16	ENSMUST00000127123.8	2297	19	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_9	24.871831952861	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAATAAAGTACCTACAAC	NA	False	NA	NA	False	AATAAA	-22	NA	12301808	12323031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_12301960_12302289_12302367_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722_12313829_12314640_12314753_12317035_12317320_12317948_12318078_12318705_12318813_12321265_12321386_12321616_12321695_12321876_12321982_12322069_12322139_12322216_12322443_12322862
transcript_43257.nic	chr18	+	2061	19	NIC	ENSMUSG00000024410.16	novel	2170	20	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	65.1417258325602	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAATAAAGTACCTACAAC	NA	False	NA	NA	False	AATAAA	-22	NA	12301782	12323031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr18_+_12301960_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722_12313829_12314640_12314753_12317035_12317081_12317265_12317320_12317948_12318078_12318705_12318813_12321265_12321386_12321616_12321695_12321876_12321982_12322069_12322139_12322216_12322443_12322862
transcript_43263.known	chr18	+	1282	9	FSM	ENSMUSG00000024410.16	ENSMUST00000126523.9	1282	9	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_6	11.1740491765519	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATTTGATTTGATGTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	12301773	12314177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_12301960_12302289_12302367_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722
transcript_43266.nic	chr18	+	868	7	ISM	ENSMUSG00000024410.16	ENSMUST00000126523.9	1282	9	-33	1430	-33	-881	5prime_fragment	FALSE	canonical	3	285	junction_6	11.4515889242013	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTAGGACTTGCCTGGTT	NA	False	NA	NA	False	AGTAAA	-17	NA	12301740	12312747	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_+_12301960_12302289_12302367_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545
transcript_43267.known	chr18	-	5224	25	FSM	ENSMUSG00000024413.15	ENSMUST00000025279.6	5224	25	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_11	10.5137971521024	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGAGGTCTTTTATTGCA	NA	False	NA	-26	True	AATAAA	-16	NA	12369457	12322749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_12324060_12324740_12324904_12326350_12326465_12327119_12327352_12328065_12328267_12329540_12329671_12330238_12330355_12331015_12331207_12331564_12331655_12332429_12332571_12332655_12332784_12333834_12333950_12334620_12334804_12335177_12335368_12337827_12337931_12341363_12341465_12343438_12343666_12344542_12344914_12345251_12345326_12346313_12346564_12347387_12347556_12352234_12352411_12354862_12354970_12356089_12356213_12369237
transcript_43270.nic	chr18	+	1863	14	ISM	ENSMUSG00000024421.17	ENSMUST00000092070.13	10548	75	169014	54245	-1366	-54245	internal_fragment	FALSE	canonical	3	23	junction_1	18.2824648423034	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGCCTATGAGAACATCCTC	NA	False	NA	NA	False	NA	NA	NA	12635889	12661825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_+_12636222_12639977_12640092_12643506_12643617_12646700_12646782_12649538_12649646_12651793_12651845_12652915_12653068_12657562_12657674_12657782_12657895_12658066_12658235_12658840_12659038_12660605_12660723_12661351_12661507_12661769
transcript_43272.nnic	chr18	+	1044	8	NNC	ENSMUSG00000024421.17	novel	10548	75	NA	NA	19794	-54245	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	18.87445093133	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGCCTATGAGAACATCCTC	4996	False	NA	NA	False	NA	NA	NA	12657049	12661825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_12657178_12657562_12657674_12657782_12657895_12658066_12658235_12658840_12659038_12660605_12660723_12661351_12661507_12661769
transcript_43273.nnic	chr18	+	983	8	NNC	ENSMUSG00000024421.17	novel	10548	75	NA	NA	20079	-54245	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	25.1054917156728	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGCCTATGAGAACATCCTC	5281	False	NA	NA	False	NA	NA	NA	12657334	12661825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_12657402_12657562_12657674_12657782_12657895_12658066_12658235_12658840_12659038_12660605_12660723_12661351_12661507_12661769
transcript_43274.known	chr18	+	5551	38	FSM	ENSMUSG00000024421.17	ENSMUST00000188815.2	5551	38	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	23.7260971177562	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATGATGTTTTATAAGCAA	NA	False	NA	NA	False	AATAAA	-19	NA	12637255	12716070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_12637453_12639977_12640092_12643506_12643617_12646700_12646782_12649538_12649646_12651793_12651845_12652915_12653068_12657562_12657674_12657782_12657895_12658066_12658235_12658840_12659038_12660605_12660723_12661351_12661507_12661769_12661912_12662562_12662666_12664891_12665006_12665090_12665271_12667017_12667161_12670743_12670915_12672725_12672878_12673018_12673182_12673591_12673726_12675364_12675510_12680398_12680519_12682248_12682383_12685834_12685953_12686221_12686363_12689683_12689824_12690727_12690860_12694753_12694908_12700722_12700890_12704956_12705141_12707270_12707412_12710808_12710969_12711070_12711202_12713342_12713437_12714749_12714870_12715574
transcript_43276.known	chr18	+	1950	14	FSM	ENSMUSG00000024424.16	ENSMUST00000169401.8	1950	14	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	13.7926315977239	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCCTGTGACCTTGCAGGA	NA	False	NA	2	True	AATAAA	-16	NA	12732982	12870107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_12733061_12817893_12817943_12820008_12820138_12822829_12822945_12828292_12828648_12830947_12831117_12853006_12853101_12857995_12858104_12861676_12861787_12863050_12863175_12866014_12866113_12867943_12868049_12869036_12869076_12869730
transcript_43278.nnic	chr18	+	1707	11	NNC	ENSMUSG00000024424.16	novel	483	3	NA	NA	5231	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	18.5245782678041	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCCTGTGACCTTGCAGGA	NA	False	NA	2	True	AATAAA	-16	NA	12828015	12870107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_12828172_12828292_12828620_12830947_12831117_12853006_12853101_12857995_12858104_12861676_12861787_12863050_12863175_12866014_12866113_12867943_12868049_12869036_12869076_12869730
transcript_43283.nnic	chr18	+	1264	9	NNC	ENSMUSG00000024424.16	novel	483	3	NA	NA	-15195	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	16.7238602003246	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCCTGTGACCTTGCAGGA	NA	False	NA	2	True	AATAAA	-16	NA	12852566	12870107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_12852776_12853006_12853101_12857995_12858104_12861676_12861787_12863050_12863175_12866014_12866113_12867943_12868049_12869036_12869076_12869730
transcript_43284.known	chr18	+	1557	5	FSM	ENSMUSG00000024430.15	ENSMUST00000115857.9	1557	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCATTGCTGTTTTAGTAA	7775	False	NA	NA	False	AATAAA	-19	NA	12874380	12888203	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_12874459_12877548_12877722_12877812_12877867_12883716_12884886_12888120
transcript_43285.known	chr18	-	3956	28	FSM	ENSMUSG00000044252.19	ENSMUST00000074352.11	3956	28	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_13	124.793898676083	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTTCAGTTGATATTGT	NA	False	NA	-8	True	AATAAA	-39	NA	13074898	12888370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_13004134_13004242_13015252_13015335_13025223_13025347_13031259_13031359_13038079_13038144_13038250_13038325_13039027_13039073_13039944_13040007_13042914_13043060_13044133_13044220_13047558_13047671_13061317_13061393_13062064_13062151_13066636_13066760_13074688
transcript_43292.known	chr18	-	3030	14	FSM	ENSMUSG00000044252.19	ENSMUST00000121808.8	3030	14	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_13	88.7068171466208	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTTCAGTTGATATTGT	NA	False	NA	-8	True	AATAAA	-39	NA	12995730	12888370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12995163
transcript_43293.known	chr18	-	2818	14	FSM	ENSMUSG00000044252.19	ENSMUST00000234871.2	2818	14	0	0	0	0	multi-exon	TRUE	canonical	3	45	junction_13	91.3749671156418	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGAATGCTTTCAGAATT	NA	False	NA	-22	True	AATAAA	-25	NA	12996497	12888384	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12996128
transcript_43294.known	chr18	-	2687	14	FSM	ENSMUSG00000044252.19	ENSMUST00000117361.8	2687	14	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_13	98.4808875218973	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGAATGCTTTCAGAATT	NA	False	NA	-22	True	AATAAA	-25	NA	12996437	12888384	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12996199
transcript_43302.known	chr18	-	2893	13	FSM	ENSMUSG00000044252.19	ENSMUST00000118313.8	2893	13	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_12	94.3352473304061	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGAATGCTTTCAGAATT	NA	False	NA	-22	True	AATAAA	-25	NA	12995770	12888384	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12995163
transcript_43304.nnic	chr18	-	2634	13	NIC	ENSMUSG00000044252.19	novel	2818	14	NA	NA	21	0	intron_retention	TRUE	canonical	3	22	junction_12	99.8294030945904	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGAATGCTTTCAGAATT	NA	False	NA	-22	True	AATAAA	-25	NA	12996476	12888384	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12996128
transcript_43309.nnic	chr18	-	1770	13	NIC	ENSMUSG00000044252.19	novel	2818	14	NA	NA	21	0	combination_of_known_splicesites	FALSE	canonical	3	22	junction_12	99.8294030945904	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGTGTTTGCTAATCTAA	NA	False	NA	-11	True	ATTAAA	-13	NA	12996476	12889248	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12996128
transcript_43320.nnic	chr18	-	453	3	Intergenic	novelGene_64	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTAGCTATAGGCTGTAGG	NA	False	NA	NA	False	NA	NA	NA	12986559	12978979	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr18_-_12979063_12981558_12981709_12986339
transcript_43321.known	chr18	-	1203	12	FSM	ENSMUSG00000044252.19	ENSMUST00000122175.8	1203	12	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	11.4285419125947	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTTACAGTAAGTACAATT	NA	False	NA	NA	False	AATAAA	-21	NA	13074834	13031173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_13031359_13038079_13038144_13038250_13038325_13039027_13039073_13039944_13040007_13042914_13043060_13044133_13044220_13047558_13047671_13061317_13061393_13062064_13062151_13066636_13066760_13074688
transcript_43323.known	chr18	+	3763	11	FSM	ENSMUSG00000024423.7	ENSMUST00000025290.7	3763	11	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_9	40.2394085443611	358	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTTATGGCTACATTGCA	NA	False	NA	16	True	NA	NA	NA	13104979	13126007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_13105430_13107769_13107899_13109035_13109089_13109525_13109589_13115146_13115233_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13121443_13122801_13122937_13123549
transcript_43331.known	chr18	-	3098	11	FSM	ENSMUSG00000037013.18	ENSMUST00000040924.9	3098	11	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_3	289.216597034126	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTGTTTCTTTAAATTAG	NA	False	NA	-13	True	AATAAA	-23	NA	14815971	14758679	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14770448_14770542_14773313_14773419_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
transcript_43334.known	chr18	-	4153	10	FSM	ENSMUSG00000037013.18	ENSMUST00000040964.13	4153	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_6	374.482193942845	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCGACCCTCCTATTTGTT	NA	False	NA	NA	False	AATAAA	-33	NA	14815823	14757254	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14770448_14770542_14773313_14773419_14774012_14774181_14788083_14788238_14803365_14803451_14812443_14812521_14815723
transcript_4334.known	chr1	+	408	3	FSM	ENSMUSG00000097113.8	ENSMUST00000180962.2	408	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCCTTTCTTGCTTTGTTT	NA	False	NA	NA	False	AATAAA	-20	NA	136611366	136618540	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_136611442_136616481_136616549_136618274
transcript_43341.known	chr18	-	2911	10	FSM	ENSMUSG00000037013.18	ENSMUST00000092041.11	2911	10	0	0	0	0	multi-exon	FALSE	canonical	3	595	junction_3	115.228382991837	685	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTCTCATTTGTTTCTT	NA	False	NA	-21	True	AATAAA	-15	NA	14815885	14758687	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14773313_14773419_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
transcript_43347.known	chr18	-	2603	9	FSM	ENSMUSG00000037013.18	ENSMUST00000234524.2	2603	9	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_5	300.413048984228	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAATAAATTATTTGTGA	NA	False	NA	-45	True	TTTAAA	-19	NA	14815823	14758711	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14773313_14773419_14774012_14774181_14788083_14788238_14803365_14803451_14812443_14812521_14815723
transcript_4335.nnic	chr1	+	913	2	NIC	ENSMUSG00000097113.8	novel	496	5	NA	NA	-88	-6928	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAATACAAGAATAAATTAGA	NA	False	NA	NA	False	AATACA	-12	NA	136598418	136603537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_136598671_136602876
transcript_43366.known	chr18	-	164	1	FSM	ENSMUSG00000094306.3	ENSMUST00000084007.4	164	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	14780987	14780823	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_14780800_14781000
transcript_43369.known	chr18	+	1692	7	FSM	ENSMUSG00000036743.5	ENSMUST00000040860.3	1692	7	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_2	7.18795288428261	532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAGAGTGTCTCCTTCAA	NA	False	NA	10	True	NA	NA	NA	14839207	14895355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_14839390_14854223_14854351_14859560_14859686_14864035_14864159_14890338_14890459_14890678_14890742_14894403
transcript_4337.known	chr1	+	413	3	FSM	ENSMUSG00000097113.8	ENSMUST00000181524.8	413	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	3	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTCTTGCTTTGTTTCT	NA	False	NA	NA	False	AATAAA	-22	NA	136611133	136618542	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_136611212_136616481_136616549_136618274
transcript_43375.nic	chr18	+	1565	6	NIC	ENSMUSG00000036743.5	novel	1692	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	33.7792835921664	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAGAGTGTCTCCTTCAA	NA	False	NA	10	True	NA	NA	NA	14839207	14895355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr18_+_14839390_14859560_14859686_14864035_14864159_14890338_14890459_14890678_14890742_14894403
transcript_43376.nnic	chr18	+	788	5	NNC	ENSMUSG00000036743.5	novel	1023	6	NA	NA	-36	658	at_least_one_novel_splicesite	TRUE	canonical	3	12	junction_4	35.0142828000232	63	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATTACACTTATTTATT	NA	False	NA	NA	False	NA	NA	NA	14839171	14865186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_14839390_14854223_14854351_14859560_14859686_14864035_14864159_14864991
transcript_43385.nnic	chr18	+	605	3	NNC	ENSMUSG00000036743.5	novel	1023	6	NA	NA	-36	-8721	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_2	43	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGTTTTGCATTGATTGT	NA	False	NA	NA	False	NA	NA	NA	14839171	14855807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_14839390_14854223_14854351_14855547
transcript_43388.known	chr18	+	534	1	FSM	ENSMUSG00000058064.7	ENSMUST00000079733.7	534	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	96149	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACTTGATCCAAAAAGCC	NA	False	NA	NA	False	NA	NA	NA	15965850	15966384	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_15965800_15966400
transcript_43389.known	chr18	-	4843	16	FSM	ENSMUSG00000024304.15	ENSMUST00000025166.14	4843	16	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_5	4.09009644004746	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTTTGAACTTTTTC	NA	False	NA	-1	True	AATAAA	-20	NA	16942303	16721933	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_16723411_16734678_16734844_16755184_16755325_16757207_16757442_16757776_16758011_16760624_16760768_16762515_16762770_16765260_16765447_16766064_16766203_16773478_16773652_16776986_16777132_16779528_16779685_16781543_16781691_16783328_16783556_16907564_16907677_16941391
transcript_43392.known	chr18	-	4508	16	FSM	ENSMUSG00000024331.12	ENSMUST00000075214.9	4508	16	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	3.07245829914744	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTGCAGGTGGTGAAGAT	NA	False	NA	NA	False	AATAAA	-17	NA	20192535	20163689	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_20165461_20166118_20166380_20167641_20167767_20168332_20168570_20171109_20171335_20174491_20174635_20174753_20175011_20176782_20176969_20177197_20177333_20178460_20178628_20179291_20179437_20180121_20180278_20181331_20181452_20183062_20183263_20184232_20184318_20192240
transcript_43393.known	chr18	+	953	7	FSM	ENSMUSG00000044393.16	ENSMUST00000121837.2	953	7	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_4	16.303544263612	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTTTGTGTTCTTTAG	NA	False	NA	NA	False	AATAAA	-2	NA	20691302	20715973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_20691402_20706545_20706582_20707996_20708132_20712096_20712259_20712390_20712536_20713568_20713736_20715764
transcript_43394.known	chr18	+	5766	15	FSM	ENSMUSG00000044393.16	ENSMUST00000059787.15	5766	15	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_4	15.0483913303932	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAACCTCTCTCCATGTCT	NA	False	NA	10	True	AATAAA	-19	NA	20691130	20737578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_20691402_20706545_20706582_20707996_20708132_20712096_20712259_20712390_20712536_20713568_20713736_20715764_20715903_20715993_20716180_20723004_20723271_20724890_20725034_20725328_20725557_20727120_20727349_20729016_20729139_20731395_20731726_20734369
transcript_43395.known	chr18	-	370	1	FSM	ENSMUSG00000091449.4	ENSMUST00000165229.4	370	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	376	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGATGACAACGACAACAAA	NA	False	NA	NA	False	NA	NA	NA	20816020	20815650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_20815600_20816000
transcript_43403.known	chr18	-	5194	29	FSM	ENSMUSG00000033382.16	ENSMUST00000225661.3	5194	29	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_23	36.8553951689739	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCACTAGCCTAGTTTCCTG	NA	False	NA	-22	True	AATAAA	-19	NA	21029150	20950279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_20951369_20952280_20952371_20953934_20954081_20958023_20958126_20961525_20961706_20964506_20964566_20964666_20964736_20966006_20966104_20968002_20968151_20969803_20970247_20974584_20974740_20977180_20977308_20978634_20978710_20979505_20979637_20980174_20980370_20983954_20984064_20985686_20985912_20988001_20988134_20993489_20993596_20995951_20996053_20996524_20996676_20998083_20998200_20999006_20999264_21000816_21000911_21003655_21003810_21006939_21007115_21007671_21007762_21018119_21018315_21028967
transcript_43404.nnic	chr18	+	868	4	Antisense	novelGene_ENSMUSG00002076630.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	7.93025150224688	19	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTTTTGTTTGTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	20895594	20997370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr18_+_20895821_20951304_20951388_20963808_20964032_20997034
transcript_43407.nnic	chr18	+	867	4	Antisense	novelGene_ENSMUSG00002076630.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_3	7.58653778449403	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTTTTGTTTGTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	20895474	20997370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr18_+_20895821_20951304_20951388_20988668_20988771_20997034
transcript_43413.nnic	chr18	+	765	3	Antisense	novelGene_ENSMUSG00002076630.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_2	7	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTTTTGTTTGTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	20895474	20997370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr18_+_20895821_20951304_20951388_20997034
transcript_43416.nnic	chr18	+	1573	7	NNC	ENSMUSG00000033107.7	novel	1348	6	NA	NA	-67	56541	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	45.7993813640898	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATCATCCAAATGTG	5274	False	NA	NA	False	NA	NA	NA	21077614	21173460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_21077815_21107355_21107513_21110785_21110881_21112107_21112199_21114227_21114336_21116155_21116977_21173359
transcript_4342.nnic	chr1	+	879	5	NNC	ENSMUSG00000097448.2	novel	1617	5	NA	NA	-7	117463	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.11803398874989	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGTGGATGGTTTTAATC	NA	False	NA	NA	False	AATAAA	-36	NA	136623941	136771343	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_136624134_136744193_136744323_136745707_136745832_136770416_136770564_136771056
transcript_43421.known	chr18	+	1348	6	FSM	ENSMUSG00000033107.7	ENSMUST00000050004.3	1348	6	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	22.5335305711289	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAAGCTGGGTGTGGTGGCG	5341	False	NA	NA	False	NA	NA	NA	21077681	21116919	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_21077815_21107355_21107513_21110785_21110881_21112107_21112199_21114227_21114336_21116155
transcript_43423.known	chr18	+	1406	6	FSM	ENSMUSG00000033107.7	ENSMUST00000234316.2	1406	6	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	19.3349424617711	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTCTGCGTTTGAAGTGT	1219	False	NA	NA	False	AATATA	-11	NA	21094528	21116781	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_21094858_21107355_21107513_21110785_21110881_21112107_21112199_21114227_21114336_21116155
transcript_43433.known	chr18	+	3002	7	FSM	ENSMUSG00000024317.16	ENSMUST00000072847.12	3002	7	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	148.868416917611	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGTGTGTCTTAATTAAA	NA	False	NA	2	True	ATTAAA	-14	NA	21134397	21161280	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_21134598_21135013_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21159142
transcript_43434.known	chr18	+	2422	8	FSM	ENSMUSG00000024317.16	ENSMUST00000234107.2	2422	8	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	133.739008703443	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTTGTAAAAAACCTTTT	NA	False	NA	10	True	AATAAA	-21	NA	21134397	21160592	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_21134598_21135013_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21157465_21157574_21159142
transcript_43435.known	chr18	+	2271	7	FSM	ENSMUSG00000024317.16	ENSMUST00000234536.2	2271	7	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_6	95.8227530391399	626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTTGTAAAAAACCTTTT	NA	False	NA	10	True	AATAAA	-21	NA	21134964	21160592	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21157465_21157574_21159142
transcript_43436.known	chr18	+	2769	6	FSM	ENSMUSG00000024317.16	ENSMUST00000052396.7	2769	6	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_5	108.138799697426	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGTGTCTTAATTAAAA	NA	False	NA	3	True	ATTAAA	-15	NA	21135047	21161281	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21159142
transcript_43439.nic	chr18	+	1543	11	NIC	ENSMUSG00000024302.17	novel	3860	25	NA	NA	679	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	3.43656805548792	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCTCTGAGTGGGCCTCA	NA	False	NA	NA	False	AATAAA	-22	NA	23630570	23737288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr18_+_23630761_23668218_23668287_23678742_23678824_23702618_23702833_23716140_23716227_23723245_23723401_23726028_23726135_23728515_23728683_23730490_23730616_23735647_23735732_23737021
transcript_43441.known	chr18	-	418	3	FSM	ENSMUSG00000086287.2	ENSMUST00000132571.2	418	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAAATGGCTTTATTAATG	NA	False	NA	NA	False	ATTAAA	-17	NA	23885362	23883503	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_23883617_23884636_23884881_23885301
transcript_43442.known	chr18	+	3936	8	FSM	ENSMUSG00000024277.15	ENSMUST00000170802.8	3936	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	61.3021955860756	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGACTTATTCTTACGTT	1806	False	NA	18	True	AATAAA	-22	NA	23885389	24026918	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_23885478_23905660_23905717_23965909_23966038_23986710_23986857_23991000_23991215_24011000_24011141_24016594_24016754_24023913
transcript_43443.known	chr18	+	4026	7	FSM	ENSMUSG00000024277.15	ENSMUST00000025127.5	4026	7	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_6	13.0596920161065	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCTGGACTTATTCTTA	NA	False	NA	14	True	AATAAA	-18	NA	23937040	24026914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_23937279_23965909_23966038_23986710_23986857_23991000_23991215_24011000_24011141_24016594_24016754_24023913
transcript_43445.known	chr18	+	2496	8	FSM	ENSMUSG00000024277.15	ENSMUST00000115830.8	2496	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	61.7546164514138	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGCTTTGAAATTTCTT	3198	False	NA	NA	False	AATAAA	-18	NA	23886781	24025421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_23886927_23905660_23905717_23965909_23966038_23986710_23986857_23991000_23991215_24011000_24011141_24016594_24016754_24023913
transcript_43446.known	chr18	+	1143	2	FSM	ENSMUSG00000024277.15	ENSMUST00000141853.2	1143	2	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGGTAAACTT	NA	False	NA	NA	False	NA	NA	NA	23937076	23966850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_23937279_23965909
transcript_43447.known	chr18	+	592	1	FSM	ENSMUSG00000117405.2	ENSMUST00000234075.2	592	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTTCCCTCGTGTCTGTA	NA	False	NA	NA	False	AAGAAA	-3	NA	24078015	24078607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_24078000_24078600
transcript_43450.known	chr18	+	5472	4	FSM	ENSMUSG00000024276.8	ENSMUST00000060762.6	5472	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	32.0659043568433	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGGATCTCTTTTT	NA	False	NA	22	True	GATAAA	-24	NA	24087761	24097730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_24087919_24089395_24089911_24090111_24090254_24093072
transcript_43452.known	chr18	+	3040	3	FSM	ENSMUSG00000063281.10	ENSMUST00000074941.8	3040	3	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	18.5	360	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATTTCTTACTGGGACA	1059	False	NA	NA	False	AATAAA	-26	NA	24122688	24138433	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_24122789_24123234_24123448_24135706
transcript_43459.known	chr18	-	5732	4	FSM	ENSMUSG00000051469.15	ENSMUST00000066497.12	5732	4	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_3	47.8957200593122	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCCATGTGTTACCTT	NA	False	NA	NA	False	AATAAA	-36	NA	24153867	24142758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_24147743_24150340_24150489_24150724_24151226_24153768
transcript_4346.known	chr1	-	1756	9	FSM	ENSMUSG00000026398.15	ENSMUST00000192929.6	1756	9	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_8	13.3041346956501	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCCACCCCTGGAAGCTT	NA	False	NA	NA	False	NA	NA	NA	136881368	136773200	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_136773449_136810001_136810150_136818420_136818541_136868146_136868788_136871024_136871167_136872696_136872816_136876459_136876598_136879839_136879903_136881231
transcript_43463.nic	chr18	-	1834	4	NIC	ENSMUSG00000051469.15	novel	1513	4	NA	NA	-23	-88	combination_of_known_junctions	FALSE	canonical	3	27	junction_3	102.009803450453	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCATTCACCATTATTATC	NA	False	NA	NA	False	AATAGA	-10	NA	24153400	24147069	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr18_-_24147743_24150340_24150489_24150724_24151226_24152888
transcript_43466.known	chr18	-	1513	4	FSM	ENSMUSG00000051469.15	ENSMUST00000153337.2	1513	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_3	83.8212383587835	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTCTTGTGAAGTTTATA	NA	False	NA	NA	False	TTTAAA	-24	NA	24153377	24146981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_24147743_24150340_24150489_24150724_24151226_24153274
transcript_43467.known	chr18	-	909	6	FSM	ENSMUSG00000047989.12	ENSMUST00000055012.12	909	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	344.638129057131	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTTGCTTTCTTCCCCTC	NA	False	NA	-124	True	NA	NA	NA	24254892	24239430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_24239716_24241793_24241940_24244771_24244840_24245717_24245830_24247133_24247245_24254705
transcript_43469.known	chr18	-	2498	5	FSM	ENSMUSG00000047989.12	ENSMUST00000153360.8	2498	5	0	0	0	0	multi-exon	FALSE	canonical	3	634	junction_3	55.0789206502814	1767	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTGGGGTGTTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	24255010	24237813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_24239716_24244771_24244840_24245717_24245830_24247133_24247245_24254705
transcript_4347.known	chr1	-	5258	10	FSM	ENSMUSG00000026393.11	ENSMUST00000186017.7	5258	10	0	0	0	0	multi-exon	TRUE	canonical	3	136	junction_1	7.19739321808962	118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAATCA	NA	False	NA	NA	False	NA	NA	NA	138547487	138410612	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_138414849_138426313_138426428_138430308_138430404_138443362_138443471_138444265_138444375_138460474_138460586_138462101_138462165_138471940_138472082_138489440_138489524_138547289
transcript_43476.known	chr18	-	2207	2	FSM	ENSMUSG00000047989.12	ENSMUST00000141489.2	2207	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	724	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTGGGGTGTTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	24255010	24237813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_24239716_24254705
transcript_43478.known	chr18	+	3977	13	FSM	ENSMUSG00000000420.16	ENSMUST00000000430.14	3977	13	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	166.935283534934	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATACTCTGAGTAGTTGTG	NA	False	NA	16	True	ATTAAA	-27	NA	24338400	24419875	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_24338576_24365655_24365711_24371298_24371543_24379106_24379282_24387574_24387742_24397381_24397590_24400584_24400756_24402504_24402623_24404642_24404824_24405718_24405859_24413000_24413100_24415158_24415294_24417766
transcript_43481.known	chr18	+	4108	13	FSM	ENSMUSG00000000420.16	ENSMUST00000170243.8	4108	13	0	0	0	0	multi-exon	FALSE	canonical	3	467	junction_1	61.8270437052697	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATATGATACTCTGAG	NA	False	NA	8	True	ATTAAA	-19	NA	24338823	24419867	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_24339138_24365655_24365711_24371298_24371543_24379106_24379282_24387574_24387742_24397381_24397590_24400584_24400756_24402504_24402623_24404642_24404824_24405718_24405859_24413000_24413100_24415158_24415294_24417766
transcript_43482.known	chr18	+	1065	5	FSM	ENSMUSG00000024273.9	ENSMUST00000097646.5	1065	5	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_2	17.066048165876	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGAATGGTAGTATTTAATT	359	False	NA	17	True	GATAAA	-14	NA	24603925	24610855	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_24604038_24604118_24604142_24606006_24606207_24608581_24608782_24610325
transcript_43483.known	chr18	+	1146	5	FSM	ENSMUSG00000024273.9	ENSMUST00000235029.2	1146	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	81.3910314469598	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGAATGGTAGTATTTAATT	340	False	NA	17	True	GATAAA	-14	NA	24603906	24610855	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_24604038_24604118_24604204_24606006_24606207_24608581_24608782_24610325
transcript_43486.known	chr18	+	356	3	FSM	ENSMUSG00000024273.9	ENSMUST00000234303.2	356	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	102.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCTCCTCAAGGAATGGG	344	False	NA	NA	False	NA	NA	NA	24603910	24610354	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_24604038_24608581_24608782_24610325
transcript_43487.nic	chr18	+	309	2	ISM	ENSMUSG00000024273.9	ENSMUST00000234955.2	458	3	-72	2086	-53	-2086	5prime_fragment	FALSE	canonical	3	181	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	287	False	NA	NA	False	NA	NA	NA	24603853	24604243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_+_24604038_24604118
transcript_43488.nnic	chr18	-	4073	8	NNC	ENSMUSG00000040446.5	novel	4299	7	NA	NA	-70	-5	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	90.8764579648926	50	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAAGAGTTTGTGTGTGTG	NA	False	NA	NA	False	AATAAA	-15	NA	24663331	24618021	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_-_24620902_24621192_24621389_24639890_24640067_24640161_24640289_24641050_24641149_24641226_24641334_24642849_24642980_24662972
transcript_4349.known	chr1	-	1017	3	FSM	ENSMUSG00000079283.3	ENSMUST00000193374.2	1017	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	29.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGTTACGAATATTTGAAC	NA	False	NA	-8	True	AATAAA	-18	NA	138784585	138779770	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_138779912_138781308_138781411_138783811
transcript_43491.known	chr18	-	4299	7	FSM	ENSMUSG00000040446.5	ENSMUST00000046206.5	4299	7	0	0	0	0	multi-exon	FALSE	canonical	3	196	junction_1	46.8807589054993	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTTTGTGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-20	NA	24663261	24618016	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_24621389_24639890_24640067_24640161_24640289_24641050_24641149_24641226_24641334_24642849_24642980_24662972
transcript_43493.nnic	chr18	-	1164	7	NNC	ENSMUSG00000040446.5	novel	2950	5	NA	NA	-70	1	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	105.114223585583	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTCTCATGTTTTTGAA	NA	False	NA	0	True	AATAAA	-19	NA	24663331	24638482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_-_24638650_24639890_24640067_24640161_24640289_24641050_24641149_24641226_24641334_24642849_24642980_24662972
transcript_43494.nnic	chr18	-	1080	7	NNC	ENSMUSG00000040446.5	novel	2950	5	NA	NA	-70	-1	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	105.459971342475	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATTGTCTCATGTTTTTG	NA	False	NA	-2	True	AATAAA	-17	NA	24663331	24638484	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_-_24638568_24639890_24640067_24640161_24640289_24641050_24641149_24641226_24641334_24642849_24642980_24662972
transcript_43495.nic	chr18	-	2404	6	ISM	ENSMUSG00000040446.5	ENSMUST00000046206.5	4299	7	-70	20467	-70	0	5prime_fragment	FALSE	canonical	3	215	junction_1	43.046951111548	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTGTCTCATGTTTTTGA	NA	False	NA	-1	True	AATAAA	-18	NA	24663331	24638483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_-_24640067_24640161_24640289_24641050_24641149_24641226_24641334_24642849_24642980_24662972
transcript_43499.known	chr18	+	3466	22	FSM	ENSMUSG00000024271.9	ENSMUST00000234266.2	3466	22	0	0	0	0	multi-exon	FALSE	canonical	3	667	junction_5	86.0279973411599	782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAGAGTCACCTGAGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	24737017	24772564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_24737190_24739913_24739993_24742686_24742758_24744969_24745127_24745504_24745583_24747472_24747538_24748217_24748285_24748945_24749084_24750457_24750554_24752134_24752236_24752438_24752571_24755135_24755295_24755535_24755725_24758568_24758636_24759181_24759275_24759444_24759503_24760051_24760125_24764415_24764609_24765815_24765938_24767395_24767530_24767957_24768066_24771450
transcript_4351.known	chr1	-	565	3	FSM	ENSMUSG00000079283.3	ENSMUST00000112025.3	565	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGTCCACAAGATGCACG	NA	False	NA	-1	True	ATTAAA	-16	NA	138784590	138779720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_138779912_138781308_138781411_138784318
transcript_43519.known	chr18	-	3882	10	FSM	ENSMUSG00000024270.12	ENSMUST00000070726.10	3882	10	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_5	10.1153837126587	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTTGTTCTCTTTCTTCT	NA	False	NA	0	True	ATTAAA	-18	NA	24736874	24712937	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_24714135_24715373_24715565_24717076_24717158_24718182_24718561_24722803_24722910_24729322_24729542_24730799_24730970_24732286_24732471_24733871_24734697_24736343
transcript_43523.known	chr18	+	673	4	FSM	ENSMUSG00000024271.9	ENSMUST00000234484.2	673	4	0	0	0	0	multi-exon	FALSE	canonical	3	817	junction_2	34.9380403953437	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGAGCTATTTTGTCCTC	NA	False	NA	NA	False	AGTAAA	-13	NA	24737019	24745322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_24737190_24739913_24739993_24742686_24742758_24744969
transcript_43524.known	chr18	+	2903	15	FSM	ENSMUSG00000039616.11	ENSMUST00000068006.9	2903	15	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_8	5.18878303533257	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGCCTGCCATTATTGAG	NA	False	NA	15	True	ATTAAA	-15	NA	24786747	24834632	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_24787125_24793046_24793137_24797073_24797141_24799066_24799709_24803621_24803699_24807287_24807488_24809616_24809734_24812442_24812869_24816185_24816349_24819683_24819763_24821994_24822120_24825574_24825681_24828930_24829070_24832909_24833015_24834442
transcript_43526.known	chr18	+	2498	12	FSM	ENSMUSG00000039616.11	ENSMUST00000234253.2	2498	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	7.54709730200628	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGATATCTGTGTGTATA	NA	False	NA	NA	False	ATTAAA	-18	NA	24786934	24822965	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_24787125_24793046_24793137_24797073_24797141_24799066_24799709_24803621_24803699_24807287_24807488_24809616_24809734_24812442_24812869_24816185_24816349_24819683_24819763_24821994_24822120_24822643
transcript_43529.nnic	chr18	+	1623	6	NNC	ENSMUSG00000033632.17	novel	1427	6	NA	NA	-10	16358	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	18.5083764820148	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTATGTTGAAATCTTGT	NA	False	NA	NA	False	AATAAA	-22	NA	25302045	25338648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_25302144_25307743_25307780_25308399_25308543_25315111_25315207_25336917_25337033_25337512
transcript_4353.known	chr1	+	8361	11	FSM	ENSMUSG00000033964.13	ENSMUST00000039867.10	8361	11	0	0	0	0	multi-exon	TRUE	canonical	3	10	junction_1	14.624978632463	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACACCCAGGTTCTTTTCA	NA	False	NA	NA	False	AATAAA	-22	NA	139350119	139380743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_139350162_139350771_139352006_139356863_139357072_139358018_139358089_139359666_139359815_139365178_139365309_139366695_139366792_139368082_139368190_139369500_139369607_139370546_139370636_139374612
transcript_43530.nnic	chr18	+	751	6	NNC	ENSMUSG00000033632.17	novel	1427	6	NA	NA	-10	16353	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	18.5083764820148	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGGCTTTATGTTGAAAT	NA	False	NA	NA	False	AATAAA	-17	NA	25302045	25338643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_25302144_25307743_25307780_25308399_25308543_25315111_25315207_25336917_25337034_25338380
transcript_43532.known	chr18	+	1021	5	FSM	ENSMUSG00000033632.17	ENSMUST00000161262.8	1021	5	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_4	17.7200451466693	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAGAGAGGAAATGAAA	NA	False	NA	NA	False	AATAAA	-5	NA	25302070	25322290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_25302144_25307743_25307780_25308399_25308543_25315111_25315207_25321616
transcript_43533.nnic	chr18	+	1418	5	NNC	ENSMUSG00000033632.17	novel	1021	5	NA	NA	-10	5853	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_4	18.1435250158287	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATATTTTTTTAACTTT	NA	False	NA	NA	False	ATTAAA	-24	NA	25302045	25328143	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_25302144_25307743_25307780_25308399_25308543_25315111_25315207_25327097
transcript_43534.nic	chr18	+	567	5	ISM	ENSMUSG00000033632.17	ENSMUST00000162149.2	1427	6	-31	86853	-10	14822	5prime_fragment	FALSE	canonical	3	40	junction_3	4.32290411644765	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGTTATACTTTATTTT	NA	False	NA	NA	False	AAGAAA	-19	NA	25302045	25337112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_+_25302144_25307743_25307780_25308399_25308543_25315111_25315207_25336917
transcript_43535.nic	chr18	+	2095	5	ISM	ENSMUSG00000033632.17	ENSMUST00000162149.2	1427	6	-31	85325	-10	16350	5prime_fragment	FALSE	canonical	3	40	junction_3	4.32290411644765	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGATTGGCTTTATGTTGA	NA	False	NA	NA	False	AATAAA	-14	NA	25302045	25338640	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_+_25302144_25307743_25307780_25308399_25308543_25315111_25315207_25336917
transcript_43541.known	chr18	-	4159	7	FSM	ENSMUSG00000024269.12	ENSMUST00000115817.3	4159	7	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_5	17.5823459438406	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGGTATCTTCAACAAAAT	NA	False	NA	NA	False	AATAAA	-22	NA	25302064	25269093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_25272197_25273502_25273664_25274577_25274695_25282170_25282300_25284256_25284345_25291300_25291381_25301583
transcript_43548.nic	chr18	-	2199	10	ISM	ENSMUSG00000024268.17	ENSMUST00000223704.2	2492	13	248846	-392	-3898	-218	3prime_fragment	FALSE	canonical	2	4	junction_2	10.3064165558269	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAGGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	25638194	25611742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_-_25612769_25619850_25620023_25624197_25624282_25629278_25629360_25630521_25630588_25634257_25634408_25635989_25636138_25637195_25637340_25637545_25637626_25637946
transcript_43555.nic	chr18	-	1103	6	ISM	ENSMUSG00000024268.17	ENSMUST00000223704.2	2492	13	248846	18120	-3898	7022	internal_fragment	FALSE	canonical	3	20	junction_1	5.17687164221791	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTGTCTGCATCCCACT	NA	False	NA	NA	False	AGTAAA	-15	NA	25638194	25630254	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_-_25630588_25634257_25634408_25635989_25636138_25637195_25637340_25637545_25637626_25637946
transcript_43556.known	chr18	+	3257	25	FSM	ENSMUSG00000033628.16	ENSMUST00000115812.10	3257	25	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_11	21.8495089571063	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCCTTGTTTTCCCTGTC	NA	False	NA	12	True	AGTAAA	-23	NA	30405799	30481179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_30406072_30407321_30407511_30410024_30410169_30415009_30415140_30421803_30421891_30423523_30423620_30426111_30426184_30426671_30426777_30427388_30427482_30431625_30431812_30435972_30436128_30436618_30436710_30438027_30438096_30444272_30444379_30445604_30445722_30449895_30450028_30452553_30452683_30453286_30453357_30455222_30455288_30456574_30456660_30457596_30457672_30466213_30466383_30469146_30469238_30477003_30477130_30480775
transcript_43559.known	chr18	-	375	1	FSM	ENSMUSG00000117345.2	ENSMUST00000234753.2	375	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	158	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACAGGTTCAATCAGCTG	NA	False	NA	NA	False	NA	NA	NA	30553113	30552738	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_30552700_30553100
transcript_43560.known	chr18	-	4371	8	FSM	ENSMUSG00000024259.10	ENSMUST00000060396.7	4371	8	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_7	28.1852472628023	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCAATATATATGTTTCT	NA	False	NA	NA	False	GATAAA	-12	NA	31742955	31713220	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_31716823_31727629_31727688_31730091_31730149_31733184_31733286_31735775_31735854_31738805_31738864_31740274_31740318_31742581
transcript_43570.known	chr18	+	3385	8	FSM	ENSMUSG00000041915.10	ENSMUST00000115808.4	3385	8	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_2	12.315578321287	207	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGCTAAACTTCACCCCT	6921	False	NA	NA	False	TTTAAA	-26	NA	31892932	31915796	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_31893248_31894832_31894944_31904722_31905168_31907288_31907400_31907689_31907805_31909039_31909131_31911909_31912007_31913696
transcript_43574.known	chr18	+	1015	4	FSM	ENSMUSG00000024258.5	ENSMUST00000025106.5	1015	4	0	0	0	0	multi-exon	FALSE	canonical	3	694	junction_1	16.2138486760204	4131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGAATTGTATTTATTT	NA	False	NA	21	True	AATAAA	-20	NA	31922211	31929754	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_31922298_31924892_31925074_31928340_31928437_31929102
transcript_43575.known	chr18	+	706	3	FSM	ENSMUSG00000024258.5	ENSMUST00000234146.2	706	3	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_2	315.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTAGAATGATGTTCAAACA	NA	False	NA	NA	False	NA	NA	NA	31922212	31929542	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_31922298_31924892_31925074_31929102
transcript_43576.known	chr18	+	4575	22	FSM	ENSMUSG00000024400.17	ENSMUST00000025264.8	4575	22	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_7	93.6872299310541	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCAGCACCCACTGTGCAG	5655	False	NA	39	True	AATACA	-22	NA	31937150	32040450	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_31937308_31960314_31960542_31962284_31962354_31962927_31963033_31966362_31966459_31966635_31966788_31968436_31968535_32011076_32011204_32012723_32012879_32012990_32013070_32014224_32014336_32018428_32018524_32019069_32019157_32019707_32019848_32020749_32020903_32021122_32022194_32026042_32026152_32029653_32030090_32035376_32035541_32035634_32035731_32037288_32037505_32039818
transcript_4358.known	chr1	+	6072	27	FSM	ENSMUSG00000033952.15	ENSMUST00000200083.5	6072	27	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_17	30.0380429400558	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTTGTGTGTGTGTGTGG	NA	False	NA	12	True	NA	NA	NA	139382509	139421826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_139382943_139384477_139384622_139384774_139386183_139389163_139389269_139389509_139389657_139390793_139391040_139391973_139392042_139395655_139395798_139396355_139396487_139397073_139397250_139398175_139398322_139398409_139398496_139399308_139399531_139401275_139401484_139401575_139401719_139401982_139402112_139404445_139404641_139410075_139410243_139413437_139413526_139414944_139415155_139416125_139416276_139417383_139417576_139417701_139417895_139418036_139418192_139419255_139419433_139420444_139420615_139421385
transcript_43580.known	chr18	+	1415	8	FSM	ENSMUSG00000024400.17	ENSMUST00000234957.2	1415	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	161.118412532966	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CCCAAAAAACCAAAAAAAAA	5650	False	NA	NA	False	NA	NA	NA	31937145	31974994	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_31937308_31960314_31960542_31962284_31962354_31962927_31963033_31966362_31966459_31966635_31966788_31968436_31968535_31974488
transcript_43585.known	chr18	+	2416	6	FSM	ENSMUSG00000024400.17	ENSMUST00000234344.2	2416	6	0	0	0	0	multi-exon	FALSE	canonical	3	387	junction_4	31.1088411870323	1480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGCACTGTTAGAATCT	5733	False	NA	7	True	AATAAA	-18	NA	31937228	31968475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_31937308_31960314_31960542_31962284_31962354_31962927_31963033_31966362_31966459_31966635
transcript_4359.nic	chr1	-	573	3	ISM	ENSMUSG00000026365.16	ENSMUST00000148225.2	3415	6	81	17212	-8	-17212	5prime_fragment	FALSE	canonical	3	9	junction_2	0.5	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGCAGTTAATGTTTTTA	NA	False	NA	NA	False	AATAAA	-2	NA	140111068	140090168	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_140090390_140090688_140090875_140110902
transcript_43592.nic	chr18	+	1850	10	NIC	ENSMUSG00000024395.10	novel	685	5	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	2.62936879248872	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGGAGTGTCTGTGTGGTT	NA	False	NA	NA	False	AATGAA	-15	NA	32055323	32091672	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr18_+_32055530_32074792_32074953_32077191_32077259_32077488_32077610_32087488_32087639_32088310_32088462_32089310_32089404_32090005_32090055_32090290_32090367_32090895
transcript_43594.known	chr18	+	9613	14	FSM	ENSMUSG00000024384.5	ENSMUST00000025243.5	9613	14	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_3	17.4029855290822	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACACTAATGCTGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	32200793	32237381	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_32201093_32203159_32203276_32212723_32213631_32216318_32216512_32217231_32217290_32217705_32217804_32219325_32219477_32220122_32220206_32221308_32221439_32222441_32222560_32223481_32223594_32224198_32224256_32226170_32226283_32230202
transcript_4360.nnic	chr1	+	1068	8	NNC	ENSMUSG00000052726.17	novel	5790	27	NA	NA	-70	26151	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4.10077145554495	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTCTGCTGAGGTTCACT	NA	False	NA	NA	False	NA	NA	NA	140173825	140305176	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_140174090_140278945_140279026_140282191_140282292_140290686_140290736_140293262_140293323_140302845_140302921_140304090_140304175_140304820
transcript_43601.known	chr18	+	2708	15	FSM	ENSMUSG00000024382.14	ENSMUST00000025241.7	2708	15	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_6	14.4393524078881	165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGTCTCTATTTTATTG	NA	False	NA	NA	False	TATAAA	-24	NA	32373352	32403204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_32373475_32373682_32373889_32376016_32376254_32377851_32377902_32378541_32378678_32378804_32378973_32379619_32379825_32381215_32381531_32387133_32387319_32390242_32390446_32394354_32394452_32397600_32397719_32398670_32398790_32400216_32400370_32402810
transcript_43603.known	chr18	+	2091	15	FSM	ENSMUSG00000024381.17	ENSMUST00000091967.13	2091	15	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_10	7.8846919627173	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGAGGCGTGTCTTTCTT	NA	False	NA	16	True	AAAAAG	-23	NA	32510297	32568790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_32510544_32539152_32539234_32545473_32545529_32545669_32545765_32546147_32546244_32547235_32547344_32552895_32552982_32553121_32553198_32554930_32555014_32557872_32558021_32559276_32559406_32564723_32564796_32565035_32565147_32565376_32565479_32568187
transcript_43604.known	chr18	+	1530	14	FSM	ENSMUSG00000024381.17	ENSMUST00000234857.2	1530	14	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_10	8.17631157710597	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTTTCTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	32510282	32568343	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_32510544_32539152_32539234_32545473_32545529_32545669_32545765_32546147_32546244_32547235_32547344_32552895_32552982_32553121_32553198_32554930_32555014_32557872_32558021_32564723_32564796_32565035_32565147_32565376_32565479_32568187
transcript_43605.known	chr18	+	1886	13	FSM	ENSMUSG00000024381.17	ENSMUST00000234496.2	1886	13	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_10	7.81024967590665	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGAACGAGGCGTGTCTT	NA	False	NA	12	True	AAAAAG	-19	NA	32510297	32568786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_32510544_32539152_32539234_32545473_32545529_32545669_32545765_32546147_32546244_32547235_32547344_32552895_32552982_32553121_32553198_32554930_32555014_32557872_32558021_32565035_32565147_32565376_32565479_32568187
transcript_43611.known	chr18	+	4455	23	FSM	ENSMUSG00000038299.17	ENSMUST00000053663.11	4455	23	0	0	0	0	multi-exon	FALSE	canonical	3	587	junction_7	67.2070318044693	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTACAAAGTTTGTCCTG	8964	False	NA	NA	False	NA	NA	NA	32970277	33000647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905
transcript_43612.known	chr18	+	2330	15	FSM	ENSMUSG00000038299.17	ENSMUST00000234158.2	2330	15	0	0	0	0	multi-exon	FALSE	canonical	3	587	junction_7	49.641007159774	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAGAAAAAAATAAGAA	8992	False	NA	NA	False	NA	NA	NA	32970305	32986492	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916
transcript_43613.known	chr18	+	2906	24	FSM	ENSMUSG00000038299.17	ENSMUST00000166214.9	2906	24	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_23	153.127237455201	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTGGGTTCTTTTTTTCT	9050	False	NA	14	True	ATTAAA	-7	NA	32970363	32999453	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905_32998972_32999240
transcript_43614.known	chr18	+	2717	11	FSM	ENSMUSG00000038128.8	ENSMUST00000042868.6	2717	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	3.0347981810987	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGCTTTTCCAATGGAGG	4783	False	NA	NA	False	ATTAAA	-17	NA	33072210	33319323	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_33072598_33211045_33211125_33240932_33240996_33242817_33242901_33262813_33262887_33289801_33289893_33291879_33291955_33309211_33309288_33312550_33312678_33315290_33315444_33317813
transcript_43616.known	chr18	-	5097	6	FSM	ENSMUSG00000024378.10	ENSMUST00000025236.9	5097	6	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	4.66476151587624	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAGATGTATATTTTTA	NA	False	NA	-80	True	AATAAA	-14	NA	33346915	33332407	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_33336869_33338103_33338219_33339172_33339300_33341229_33341280_33342095_33342211_33346686
transcript_43619.known	chr18	-	979	5	FSM	ENSMUSG00000024378.10	ENSMUST00000141617.2	979	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_3	4.65698400254929	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAATTTGGAATCTTGAAG	NA	False	NA	NA	False	ATTAAA	-28	NA	33346874	33337719	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_33338219_33339172_33339300_33341229_33341280_33342095_33342211_33346686
transcript_43620.known	chr18	-	843	5	FSM	ENSMUSG00000042834.16	ENSMUST00000237066.2	843	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	20.2854627751008	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGTCTTCCACAACTCAA	NA	False	NA	NA	False	NA	NA	NA	33596907	33571491	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_33571893_33575868_33575947_33595073_33595141_33596430_33596473_33596652
transcript_43621.known	chr18	-	2185	5	FSM	ENSMUSG00000042834.16	ENSMUST00000168890.2	2185	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_4	6.79613860953409	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGCTTTGGCTCATTATT	NA	False	NA	-4	True	AATAAA	-20	NA	33597082	33570071	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_33571893_33575868_33575947_33595073_33595141_33596430_33596473_33596905
transcript_43625.known	chr18	-	659	4	FSM	ENSMUSG00000042834.16	ENSMUST00000051087.16	659	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	5.90668171555645	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTGTATGGGGTTTTGAT	NA	False	NA	NA	False	NA	NA	NA	33596792	33571740	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_33571893_33575868_33575947_33595073_33595141_33596430
transcript_43631.known	chr18	+	303	2	FSM	ENSMUSG00000087590.3	ENSMUST00000179138.2	303	2	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	0	733	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCGATGTGCTGTTCTGA	NA	False	NA	-2	True	AATAAA	-2	NA	33927991	33929022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_33928178_33928905
transcript_43632.known	chr18	+	430	3	FSM	ENSMUSG00000087590.3	ENSMUST00000146010.3	430	3	0	0	0	0	multi-exon	FALSE	canonical	3	377	junction_1	24	17415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACACGTGTATGTTGTGTG	NA	False	NA	15	True	AATAAA	-19	NA	33927944	33929039	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_33928178_33928435_33928499_33928905
transcript_43634.nic	chr18	-	2966	23	ISM	ENSMUSG00000024376.8	ENSMUST00000025234.7	3566	24	314	632	314	-42	3prime_fragment	FALSE	canonical	3	125	junction_9	28.0317116763164	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAAGTGTCCTTGTCTTGT	NA	False	NA	-4	True	NA	NA	NA	34139658	33930011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_-_33930524_33931560_33931643_33931743_33931855_33934623_33934693_33935565_33935614_33943271_33943392_33957511_33957590_33958459_33958508_33961156_33961271_33961779_33961864_33965647_33965739_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961_34010050_34011964_34012086_34013239_34013338_34019403_34019483_34024477_34024530_34054882_34054988_34139037
transcript_43637.nnic	chr18	-	2378	22	NNC	ENSMUSG00000024376.8	novel	3566	24	NA	NA	-29021	-42	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_21	43.4022999066663	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAAGTGTCCTTGTCTTGT	NA	False	NA	-4	True	NA	NA	NA	34054048	33930011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_-_33930524_33931560_33931643_33931743_33931855_33934623_33934693_33935565_33935614_33943271_33943392_33957511_33957590_33958459_33958508_33961156_33961271_33961779_33961864_33965647_33965739_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961_34010050_34011964_34012086_34013239_34013338_34019403_34019483_34024477_34024530_34053910
transcript_4364.known	chr1	-	11586	17	FSM	ENSMUSG00000026361.10	ENSMUST00000018337.9	11586	17	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_10	26.4054178862975	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACTGTTGCAGAGGGCTC	NA	False	NA	-3	True	NA	NA	NA	143578631	143474537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_143484296_143485107_143485250_143491040_143491142_143493016_143493179_143503239_143503328_143503583_143503620_143510769_143510828_143543362_143543428_143545727_143545807_143547067_143547167_143553376_143553594_143561660_143561750_143567012_143567066_143567151_143567215_143571130_143571201_143574954_143575061_143578231
transcript_43650.nic	chr18	-	1454	12	NIC	ENSMUSG00000024376.8	novel	3566	24	NA	NA	-63	-42	combination_of_known_junctions	FALSE	canonical	3	15	junction_11	59.7486470679151	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAAGTGTCCTTGTCTTGT	NA	False	NA	-4	True	NA	NA	NA	33965910	33930011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr18_-_33930524_33931560_33931643_33931743_33931855_33934623_33934693_33935565_33935614_33943271_33943392_33957511_33957590_33958459_33958508_33961156_33961271_33961779_33961864_33965647_33965739_33965813
transcript_43658.known	chr18	-	3566	24	FSM	ENSMUSG00000024376.8	ENSMUST00000025234.7	3566	24	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_23	34.3352756377329	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTCTGGTCTCTTTACTG	NA	False	NA	0	True	AATAAA	-13	NA	34139972	33929379	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_33930524_33931560_33931643_33931743_33931855_33934623_33934693_33935565_33935614_33943271_33943392_33957511_33957590_33958459_33958508_33961156_33961271_33961779_33961864_33965647_33965739_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961_34010050_34011964_34012086_34013239_34013338_34019403_34019483_34024477_34024530_34054882_34054988_34139037_34139476_34139821
transcript_43660.nic	chr18	+	774	5	ISM	ENSMUSG00000005871.16	ENSMUST00000066133.7	1185	9	-41	17645	-37	-3891	5prime_fragment	FALSE	canonical	3	10	junction_1	38.8868551055495	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCGTTGTTGTTGTTCTT	NA	False	NA	NA	False	AATACA	-14	NA	34380709	34405753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_+_34380788_34394057_34394211_34401350_34401433_34402108_34402308_34405491
transcript_43667.known	chr18	+	744	4	FSM	ENSMUSG00000014504.17	ENSMUST00000131713.8	744	4	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	857.182594316987	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGTTTATAAGTTTAATAA	NA	False	NA	-74	True	NA	NA	NA	34464175	34469574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_34464313_34467345_34467418_34467509_34467622_34469151
transcript_43671.known	chr18	+	876	5	FSM	ENSMUSG00000014504.17	ENSMUST00000072576.10	876	5	0	0	0	0	multi-exon	FALSE	canonical	3	833	junction_3	511.998291012773	8547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTAGTAGCTTTCACTTAG	NA	False	NA	4	True	AATAAA	-14	NA	34464197	34469652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_34464313_34464802_34464879_34467345_34467418_34467509_34467622_34469151
transcript_43672.known	chr18	+	956	6	FSM	ENSMUSG00000014504.17	ENSMUST00000142010.2	956	6	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	757.224141189384	747	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTTGTTCATCTTTAAG	NA	False	NA	-42	True	AATAAA	-12	NA	34464228	34469606	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_34464313_34464802_34464879_34465958_34466116_34467345_34467418_34467509_34467622_34469151
transcript_43673.known	chr18	+	613	4	FSM	ENSMUSG00000014504.17	ENSMUST00000119329.8	613	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	851.206594585983	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGTGTGTGGAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	34464210	34469474	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_34464313_34464802_34464879_34467509_34467622_34469151
transcript_43678.known	chr18	-	2852	5	FSM	ENSMUSG00000005873.7	ENSMUST00000006027.7	2852	5	0	0	0	0	multi-exon	FALSE	canonical	3	477	junction_1	38.3495436739474	2076	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTTTAAAATGTTGTTTT	5561	False	NA	-7	True	AATAAA	-27	NA	34506422	34477937	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_34480222_34482687_34482857_34490144_34490284_34505457_34505552_34506256
transcript_43679.known	chr18	-	439	3	FSM	ENSMUSG00000005873.7	ENSMUST00000236887.2	439	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	237	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTTTGCCTTTGTTGTC	6433	False	NA	-5	True	ATTAAA	-18	NA	34505550	34480044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_34480222_34482687_34482857_34505457
transcript_43681.known	chr18	-	3005	21	FSM	ENSMUSG00000003778.15	ENSMUST00000097626.10	3005	21	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_13	121.034540524596	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGTGTGTATATATAACA	NA	False	NA	-34	True	NA	NA	NA	34757654	34732911	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741681_34742857_34743003_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
transcript_43682.known	chr18	-	1702	2	FSM	ENSMUSG00000003778.15	ENSMUST00000127159.2	1702	2	0	0	0	0	multi-exon	FALSE	canonical	3	307	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-14	NA	34757654	34754966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_34756605_34757590
transcript_43684.known	chr18	+	3674	19	FSM	ENSMUSG00000003779.17	ENSMUST00000237407.2	3674	19	0	0	0	0	multi-exon	TRUE	canonical	3	938	junction_13	99.0044268869321	989	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATGTCCACGAAGTTCTC	5977	False	NA	NA	False	AGTAAA	-10	NA	34757787	34766330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_34758114_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
transcript_43687.known	chr18	+	3107	19	FSM	ENSMUSG00000003779.17	ENSMUST00000166044.3	3107	19	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	232.455445087047	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGGATTCCAAATTTAGAA	6275	False	NA	23	True	AATAAA	-20	NA	34758085	34765858	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_34758317_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
transcript_43694.known	chr18	-	4133	16	FSM	ENSMUSG00000024370.18	ENSMUST00000133181.2	4133	16	0	0	0	0	multi-exon	FALSE	canonical	3	906	junction_9	78.8679909722569	754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAAAAACGCCTTATT	NA	False	NA	NA	False	AATAAA	-41	NA	34784788	34764735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_34767218_34767445_34767566_34767640_34767720_34769338_34769401_34769755_34769832_34770111_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442_34784516_34784599
transcript_43695.known	chr18	-	2084	17	FSM	ENSMUSG00000024370.18	ENSMUST00000025228.12	2084	17	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	259.182247655969	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATACTACTGTTCTTTCTA	NA	False	NA	NA	False	AATAAA	-14	NA	34784788	34764003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_34764355_34767135_34767218_34767445_34767566_34767640_34767720_34769338_34769401_34769755_34769832_34770111_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442_34784516_34784599
transcript_43696.known	chr18	-	517	2	FSM	ENSMUSG00000024370.18	ENSMUST00000151409.2	517	2	0	0	0	0	multi-exon	FALSE	canonical	3	1210	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAGTTTTTAATTAAAAA	NA	False	NA	NA	False	NA	NA	NA	34784771	34779904	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_34780093_34784442
transcript_43698.known	chr18	-	1945	15	FSM	ENSMUSG00000044201.11	ENSMUST00000060710.9	1945	15	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_14	20.2922524674833	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTAGATGTCTCTAAGCC	2792	False	NA	-15	True	AATAAA	-22	NA	34884586	34866045	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_34866447_34866629_34866742_34867771_34867906_34868423_34868523_34871268_34871332_34873380_34873483_34876990_34877117_34877923_34878023_34880276_34880367_34880662_34880697_34881967_34882014_34882569_34882665_34883790_34884017_34884166_34884265_34884366
transcript_43710.known	chr18	+	4256	5	FSM	ENSMUSG00000034300.18	ENSMUST00000097622.4	4256	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	5.02493781056044	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAATCCATTTTCCCAAGC	5087	False	NA	4	True	AATAAA	-11	NA	34892608	34906791	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_34892651_34895547_34895778_34896125_34896184_34901220_34902006_34903650
transcript_43711.known	chr18	+	4200	4	FSM	ENSMUSG00000034300.18	ENSMUST00000235929.2	4200	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	16.8588914885357	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTGTACGATAGTGTCT	5104	False	NA	26	True	AATAAA	-33	NA	34892625	34906813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_34892651_34895547_34895778_34901223_34902006_34903650
transcript_43712.known	chr18	+	2032	7	FSM	ENSMUSG00000038773.12	ENSMUST00000224715.2	2032	7	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_6	14.229273425661	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTAAGTCGTATTTTTCT	NA	False	NA	27	True	AATAAA	-36	NA	34910118	34937686	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_34910379_34926056_34926225_34927502_34927617_34928727_34928834_34929840_34929966_34932337_34932413_34936502
transcript_43713.known	chr18	+	1926	8	FSM	ENSMUSG00000038555.8	ENSMUST00000043484.8	1926	8	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	2.56347977784662	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTGATCTCTGCGTTGTT	NA	False	NA	16	True	AATAAA	-22	NA	34973641	34980516	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_34973841_34975506_34975580_34975909_34975987_34978304_34978426_34978627_34978742_34978997_34979146_34979241_34979373_34979453
transcript_43717.known	chr18	-	3709	11	FSM	ENSMUSG00000024360.9	ENSMUST00000025218.8	3709	11	0	0	0	0	multi-exon	FALSE	canonical	3	901	junction_10	88.1591742248077	2076	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGTGTGCTTGAGATT	NA	False	NA	NA	False	ATTAAA	-16	NA	35065060	35035837	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_35038124_35039034_35039183_35040667_35040733_35041094_35041251_35042195_35042326_35042797_35042989_35043168_35043308_35046606_35046747_35047052_35047229_35064621_35064726_35064886
transcript_43725.known	chr18	-	3049	17	FSM	ENSMUSG00000024359.11	ENSMUST00000025217.11	3049	17	0	0	0	0	multi-exon	TRUE	canonical	3	5978	junction_5	267.479905787332	5322	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGTCGTTGTAATCTTCT	199	False	NA	-19	True	CATAAA	-5	NA	35087410	35070466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
transcript_43727.known	chr18	+	3733	18	FSM	ENSMUSG00000037815.8	ENSMUST00000042345.8	3733	18	0	0	0	0	multi-exon	FALSE	canonical	3	1584	junction_14	159.493141807844	549	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGCAGAAGTCGTTCTT	NA	False	NA	33	True	AATAAA	-21	NA	35251911	35387832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657
transcript_43729.nnic	chr18	+	1341	9	NNC	ENSMUSG00000037815.8	novel	1453	10	NA	NA	-11	15909	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	775.492011161301	68	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGAGTGTGGTTTTGTCA	NA	False	NA	NA	False	ATTAAA	-16	NA	35251900	35332012	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35321870_35321927_35331925
transcript_43731.known	chr18	+	1656	7	FSM	ENSMUSG00000037815.8	ENSMUST00000236969.2	1656	7	0	0	0	0	multi-exon	FALSE	canonical	3	1595	junction_4	198.935221170667	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACCAGTATTATAAAATTT	NA	False	NA	NA	False	AAAAAG	-21	NA	35251939	35316103	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402
transcript_43746.known	chr18	-	1703	10	FSM	ENSMUSG00000024357.11	ENSMUST00000025215.10	1703	10	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_3	10.8423039781937	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTCTGTCTCTTGTGTCTG	NA	False	NA	-2	True	ATTAAA	-18	NA	35631982	35399448	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_35399963_35402091_35402257_35402666_35402764_35450894_35451017_35458336_35458529_35474150_35474251_35481692_35481814_35551109_35551249_35571319_35571434_35631843
transcript_43747.known	chr18	-	1524	9	FSM	ENSMUSG00000024357.11	ENSMUST00000235619.2	1524	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	48.2841524208513	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTCTGTCTCTTGTGTCTG	NA	False	NA	-2	True	ATTAAA	-18	NA	35631947	35399448	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_35399963_35402091_35402257_35402666_35402764_35450894_35451017_35458336_35458529_35474150_35474251_35481692_35481809_35571319_35571434_35631843
transcript_43748.known	chr18	-	538	4	FSM	ENSMUSG00000024357.11	ENSMUST00000236007.2	538	4	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_1	61.0482504981829	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAGGAAGTAATTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	35631915	35563096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_35563361_35565516_35565605_35571319_35571434_35631843
transcript_43749.known	chr18	-	335	3	FSM	ENSMUSG00000024357.11	ENSMUST00000235524.2	335	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	67	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGGTATCTGTTGAGAT	NA	False	NA	NA	False	ATTAAA	-23	NA	35631929	35563225	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_35563361_35571319_35571434_35631843
transcript_43750.known	chr18	+	6262	15	FSM	ENSMUSG00000037236.17	ENSMUST00000166793.10	6262	15	0	0	0	0	multi-exon	FALSE	canonical	3	826	junction_2	183.6430655108	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGATTT	NA	False	NA	NA	False	AAGAAA	-5	NA	35695210	35726888	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_35695346_35704895_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
transcript_43752.known	chr18	+	1854	14	FSM	ENSMUSG00000037236.17	ENSMUST00000237061.2	1854	14	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_1	296.625019792437	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGTACACATACGGTTA	NA	False	NA	NA	False	AATAGA	-27	NA	35695271	35723634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_35695346_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
transcript_43756.known	chr18	+	1846	14	FSM	ENSMUSG00000037236.17	ENSMUST00000236507.2	1846	14	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	325.222090707295	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAGTTAATGAAAATGTTT	NA	False	NA	NA	False	AATAGA	-44	NA	35695263	35723651	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_35695313_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
transcript_43759.known	chr18	+	1951	14	FSM	ENSMUSG00000037236.17	ENSMUST00000237365.2	1951	14	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	322.705042381891	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTGTTTTAGTGGAAAAT	NA	False	NA	NA	False	AATACA	-29	NA	35695351	35723582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_35695575_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
transcript_4376.known	chr1	+	924	4	FSM	ENSMUSG00000018196.19	ENSMUST00000145969.8	924	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	275.869534381744	1104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCCGATTGGCCAGTTTT	NA	False	NA	31	True	AATAAA	-18	NA	143614766	143622514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_143615181_143617385_143617450_143620784_143620962_143622245
transcript_43762.known	chr18	+	2638	13	FSM	ENSMUSG00000037236.17	ENSMUST00000235960.2	2638	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	348.249990029513	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTTAGGTCATGTTGAT	NA	False	NA	32	True	AATAAA	-8	NA	35695263	35724472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_35695346_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
transcript_4377.known	chr1	+	580	4	FSM	ENSMUSG00000018196.19	ENSMUST00000111957.10	580	4	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	245.711664806989	1377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCCGATTGGCCAGTTTT	NA	False	NA	31	True	AATAAA	-18	NA	143615352	143622514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_143615423_143617385_143617450_143620784_143620962_143622245
transcript_43772.known	chr18	+	1355	1	FSM	ENSMUSG00000117869.2	ENSMUST00000235956.2	1355	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGTCAAGATTT	NA	False	NA	NA	False	AATAAA	-5	NA	35686462	35687817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_35686500_35687800
transcript_43773.known	chr18	+	1190	4	FSM	ENSMUSG00000117869.2	ENSMUST00000235679.2	1190	4	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_1	16.2685791225499	2121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCACTGTGTAGTTGGTC	NA	False	NA	NA	False	NA	NA	NA	35686423	35691369	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389
transcript_43774.known	chr18	+	1586	2	FSM	ENSMUSG00000117869.2	ENSMUST00000235277.2	1586	2	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_1	0	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATACTTATTTTCTGTGA	NA	False	NA	NA	False	NA	NA	NA	35686474	35689017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_35686523_35687479
transcript_43775.known	chr18	+	1515	15	FSM	ENSMUSG00000117694.2	ENSMUST00000237592.2	1515	15	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_4	401.861383350741	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGGTGCCGAATCTGCTGA	NA	False	NA	NA	False	ATTAAA	-19	NA	35686462	35720761	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389_35690423_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683
transcript_43776.known	chr18	+	708	3	FSM	ENSMUSG00000117869.2	ENSMUST00000237021.2	708	3	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_1	17	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATGTTAAAAGAAAATGGGA	NA	False	NA	NA	False	NA	NA	NA	35686464	35690283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_35686523_35687479_35687515_35689668
transcript_43777.known	chr18	+	1676	3	FSM	ENSMUSG00000117869.2	ENSMUST00000235750.2	1676	3	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_1	0.5	599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACATTGGAATTTCATTG	NA	False	NA	NA	False	NA	NA	NA	35686460	35690935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_35687515_35689668_35689745_35690389
transcript_43782.known	chr18	+	766	7	FSM	ENSMUSG00000037058.17	ENSMUST00000235210.2	766	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1378.69765439063	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCACTGTGTTACACTTACG	5260	False	NA	-65	True	NA	NA	NA	35732289	35749398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_35732364_35732765_35732812_35733097_35733171_35741790_35741873_35743923_35744088_35746375_35746556_35749251
transcript_4379.known	chr1	+	3337	4	FSM	ENSMUSG00000018196.19	ENSMUST00000185362.7	3337	4	0	0	0	0	multi-exon	FALSE	canonical	3	459	junction_1	59.84981202978	4144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAAATCCTTATCGTCAG	NA	False	NA	NA	False	NA	NA	NA	143615294	143625139	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_143615497_143617385_143617450_143620784_143620962_143622245
transcript_43795.known	chr18	+	1522	5	FSM	ENSMUSG00000037058.17	ENSMUST00000235400.2	1522	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	1449.29120607282	2542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGCTGGTGCTTGTGTTAT	4672	False	NA	19	True	AATAAA	-13	NA	35731701	35750236	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_35731813_35741790_35741873_35743923_35744088_35746375_35746556_35749251
transcript_43798.known	chr18	+	857	5	FSM	ENSMUSG00000037058.17	ENSMUST00000236020.2	857	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	1458.22751997073	755	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCAAATTAAATCACCTCC	4664	False	NA	-19	True	NA	NA	NA	35731693	35749572	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_35731813_35733097_35733171_35743923_35744088_35746375_35746556_35749251
transcript_43801.known	chr18	+	713	5	FSM	ENSMUSG00000037058.17	ENSMUST00000236666.2	713	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	1472.19071454754	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTTACACTTACGCATTG	4647	False	NA	-60	True	NA	NA	NA	35731676	35749403	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_35731813_35742645_35742727_35743923_35744088_35746375_35746556_35749251
transcript_43812.known	chr18	+	683	4	FSM	ENSMUSG00000037058.17	ENSMUST00000236868.2	683	4	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	1322.78519294202	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCATGCTTAATAAAAGTGC	4719	False	NA	-21	True	NA	NA	NA	35731748	35749442	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_35731897_35743923_35744088_35746375_35746556_35749251
transcript_4382.known	chr1	+	1199	4	FSM	ENSMUSG00000018196.19	ENSMUST00000050491.11	1199	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	254.24004405286	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAGTCAGTCCTCCTACC	NA	False	NA	NA	False	NA	NA	NA	143615383	143623047	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_143615497_143617385_143617493_143620784_143620962_143622245
transcript_43821.known	chr18	+	1475	4	FSM	ENSMUSG00000037058.17	ENSMUST00000041314.17	1475	4	0	0	0	0	multi-exon	FALSE	canonical	3	2803	junction_2	114.719948860983	9382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTGCTTGTGTTATTGG	4640	False	NA	22	True	AATAAA	-16	NA	35731669	35750239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_35731813_35743923_35744088_35746375_35746556_35749251
transcript_43822.known	chr18	+	602	2	FSM	ENSMUSG00000037058.17	ENSMUST00000237730.2	602	2	0	0	0	0	multi-exon	FALSE	canonical	3	2803	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCATTGCTAATGTAGAAC	3345	False	NA	NA	False	AATAAA	-7	NA	35744037	35746927	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_35744088_35746375
transcript_43825.nic	chr18	-	632	5	NIC	ENSMUSG00000024352.13	novel	702	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_4	65.5820097282784	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAGCTGTAATGCCCAACC	NA	False	NA	-11	True	AATAAA	-22	NA	35795239	35789745	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr18_-_35789898_35790001_35790105_35793335_35793407_35793496_35793628_35795064
transcript_43826.known	chr18	-	904	4	FSM	ENSMUSG00000024353.6	ENSMUST00000025211.6	904	4	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_1	0.471404520791032	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTAGTGTTGGCTGTTGAA	NA	False	NA	-1	True	AATAAA	-16	NA	35782420	35780319	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_35780780_35780876_35780988_35781311_35781437_35782212
transcript_4383.known	chr1	+	3515	4	FSM	ENSMUSG00000018196.19	ENSMUST00000129653.3	3515	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	275.398297420703	608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGTGTGCTGAATTTTAT	NA	False	NA	NA	False	AATAAA	-19	NA	143616112	143625414	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_143616218_143617385_143617450_143620784_143620962_143622245
transcript_43831.known	chr18	-	549	3	FSM	ENSMUSG00000024352.13	ENSMUST00000236971.2	549	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	85	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTCCCATTTTTCTTGAAA	NA	False	NA	-41	True	NA	NA	NA	35795184	35793108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_35793407_35793496_35793628_35795064
transcript_43833.known	chr18	-	702	6	FSM	ENSMUSG00000024352.13	ENSMUST00000025209.12	702	6	0	0	0	0	multi-exon	TRUE	canonical	3	154	junction_2	20.7980768341691	1250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAATGCCCAACCTCTC	NA	False	NA	-7	True	AATAAA	-26	NA	35795239	35789741	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_35789898_35790001_35790105_35793335_35793407_35793496_35793628_35793844_35793911_35795064
transcript_43838.nic	chr18	-	1328	9	NIC	ENSMUSG00000024350.7	novel	5146	8	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_7	22.8250821466211	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCACTTTACTCTCTGCTG	NA	False	NA	-10	True	AATACA	-14	NA	35836190	35808083	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr18_-_35808297_35813818_35813992_35814972_35815083_35816270_35816378_35819720_35819907_35830030_35830177_35833856_35834044_35835464_35835559_35836078
transcript_43842.known	chr18	-	1055	9	FSM	ENSMUSG00000073599.11	ENSMUST00000133064.8	1055	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	1.78535710713571	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAATTTCTTTTAAGGTCT	NA	False	NA	NA	False	ATTAAA	-20	NA	35855409	35846138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_35846488_35846693_35846791_35848231_35848269_35848475_35848575_35849005_35849129_35849805_35849866_35850205_35850344_35851400_35851440_35855296
transcript_43843.known	chr18	-	5146	8	FSM	ENSMUSG00000024350.7	ENSMUST00000025208.7	5146	8	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	8.80630571852711	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGACTTTATGACTCCTCT	NA	False	NA	-4	True	ATTAAA	-18	NA	35836174	35804155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_35808297_35813818_35813992_35814972_35815083_35816270_35816378_35819720_35819907_35830030_35830177_35833856_35834044_35836078
transcript_43849.known	chr18	+	2504	2	FSM	ENSMUSG00000073598.4	ENSMUST00000097617.3	2504	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTTGTTTGTTTATTAT	1342	False	NA	NA	False	NA	NA	NA	35860041	35863922	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_35860150_35861526
transcript_4385.known	chr1	+	414	3	FSM	ENSMUSG00000018196.19	ENSMUST00000149103.2	414	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	227	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCGCTATTTTAAAATATGA	NA	False	NA	NA	False	NA	NA	NA	143615347	143618580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_143615497_143617385_143617450_143618379
transcript_43850.known	chr18	-	1114	9	FSM	ENSMUSG00000073599.11	ENSMUST00000097618.10	1114	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	2.58602010819715	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAATTTCTTTTAAGGTCT	NA	False	NA	NA	False	ATTAAA	-20	NA	35854544	35846138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_35846488_35846693_35846791_35848231_35848269_35848475_35848575_35849005_35849129_35849805_35849866_35850205_35850344_35851400_35851440_35854372
transcript_43851.known	chr18	-	2299	8	FSM	ENSMUSG00000024349.11	ENSMUST00000115728.5	2299	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	3.35638289270592	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTGGCCTAGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	35873607	35866733	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_35867752_35868155_35868343_35868931_35869171_35871733_35871843_35872092_35872274_35872403_35872631_35872977_35873068_35873359
transcript_43854.known	chr18	-	2134	7	FSM	ENSMUSG00000024349.11	ENSMUST00000237919.2	2134	7	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_4	3.4960294939005	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTGGCCTAGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	35873532	35866733	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_35867752_35868155_35868343_35868931_35869171_35871733_35871843_35872092_35872274_35872403_35872631_35873359
transcript_43857.known	chr18	+	2480	7	FSM	ENSMUSG00000091896.9	ENSMUST00000170693.9	2480	7	0	0	0	0	multi-exon	FALSE	canonical	3	837	junction_2	121.947734706308	924	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACCTGTCTCATCTCTCA	NA	False	NA	17	True	AATAAA	-28	NA	35904610	35940221	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_35905066_35926517_35926582_35932893_35932926_35933004_35933083_35933162_35933269_35934326_35934421_35938570
transcript_4386.known	chr1	+	758	3	FSM	ENSMUSG00000018196.19	ENSMUST00000145571.2	758	3	0	0	0	0	multi-exon	FALSE	canonical	3	459	junction_1	58.5	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCCATGCTGAAAGGGGAT	NA	False	NA	NA	False	NA	NA	NA	143615355	143621337	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_143615497_143617385_143617450_143620784
transcript_43864.known	chr18	+	884	6	FSM	ENSMUSG00000091896.9	ENSMUST00000235516.2	884	6	0	0	0	0	multi-exon	FALSE	canonical	3	837	junction_2	80.5729483139347	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGCAGTGCTGCGTGTTG	NA	False	NA	71	True	NA	NA	NA	35904814	35938749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_35905066_35926517_35926582_35932893_35932926_35933004_35933269_35934326_35934421_35938570
transcript_4387.known	chr1	+	1651	2	FSM	ENSMUSG00000018196.19	ENSMUST00000148600.3	1651	2	0	0	0	0	multi-exon	FALSE	canonical	3	459	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACGATGAACGTCGCAGCC	NA	False	NA	NA	False	NA	NA	NA	143615303	143618843	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_143615497_143617385
transcript_43872.known	chr18	+	2302	3	FSM	ENSMUSG00000046668.10	ENSMUST00000060722.8	2302	3	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	140.5	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACACTCCTGGCTTCTTGC	NA	False	NA	34	True	AATAAA	-25	NA	35962840	35994741	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_35963040_35991445_35992510_35993702
transcript_43877.nnic	chr18	+	892	2	NIC	ENSMUSG00000118080.2	novel	539	2	NA	NA	-50	1270	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGACCCATAGTCCAGATTC	7970	False	NA	NA	False	NA	NA	NA	36007316	36010360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr18_+_36007478_36009629
transcript_43878.known	chr18	+	668	2	FSM	ENSMUSG00000118122.2	ENSMUST00000235914.2	668	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCTTCTCGTTGTCAAAT	NA	False	NA	NA	False	NA	NA	NA	36056347	36062637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_36056537_36062158
transcript_4388.known	chr1	-	8738	9	FSM	ENSMUSG00000018199.10	ENSMUST00000159879.2	8738	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	6.34428877022476	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTGTCTTTTAATCATTT	NA	False	NA	-1	True	AATAAA	-17	NA	143652806	143626527	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_143633633_143635680_143635828_143636090_143636205_143637007_143637125_143641170_143641309_143641511_143641659_143642327_143642549_143646163_143646765_143652658
transcript_43885.known	chr18	+	1101	4	FSM	ENSMUSG00000046727.14	ENSMUST00000235864.2	1101	4	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	406.851597295896	653	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTACTATCCACTCACAAA	NA	False	NA	134	True	NA	NA	NA	36481711	36536150	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_36481870_36483746_36483862_36499567_36499795_36535549
transcript_43889.known	chr18	+	831	3	FSM	ENSMUSG00000046727.14	ENSMUST00000050584.10	831	3	0	0	0	0	multi-exon	FALSE	canonical	3	759	junction_1	90	4630	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTGACTTACTCCAGGT	NA	False	NA	17	True	AATAAA	-17	NA	36481749	36536033	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_36481870_36499567_36499795_36535549
transcript_43890.known	chr18	+	445	3	FSM	ENSMUSG00000046727.14	ENSMUST00000152804.9	445	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	356.5	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAGACCAATTCTTTTCT	NA	False	NA	NA	False	AATAAA	-13	NA	36481826	36526423	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_36481870_36499567_36499795_36526248
transcript_43891.known	chr18	+	872	4	FSM	ENSMUSG00000046727.14	ENSMUST00000235576.2	872	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	357.324626759602	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGCTGTGTGACTTACTC	NA	False	NA	12	True	AATAAA	-12	NA	36481815	36536028	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_36481870_36499567_36499795_36533361_36533474_36535549
transcript_43909.known	chr18	-	1109	4	FSM	ENSMUSG00000024346.7	ENSMUST00000025204.7	1109	4	0	0	0	0	multi-exon	FALSE	canonical	3	3024	junction_2	66.9792671072342	3795	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGTTGCCTTGCATTT	NA	False	NA	NA	False	NA	NA	NA	36587577	36536728	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_36537514_36565358_36565444_36584132_36584300_36587505
transcript_43910.known	chr18	-	485	3	FSM	ENSMUSG00000024346.7	ENSMUST00000237499.2	485	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	1566	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGCCAGGAGCTCTCAAC	NA	False	NA	NA	False	NA	NA	NA	36584297	36537257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_36537514_36565358_36565444_36584153
transcript_43911.known	chr18	-	2375	6	FSM	ENSMUSG00000024486.7	ENSMUST00000025363.7	2375	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	10.9068785635488	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGTTTCATTTTTGGTT	NA	False	NA	-10	True	AATAAA	-22	NA	36648858	36637979	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_36639418_36639687_36639779_36640501_36640658_36645609_36645788_36648139_36648314_36648520
transcript_43920.nnic	chr18	+	726	4	NIC	ENSMUSG00000024485.17	novel	3348	21	NA	NA	4125	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	0.942809041582063	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAACAATATGTGGTC	2878	False	NA	NA	False	NA	NA	NA	36668212	36689326	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr18_+_36668497_36669899_36669973_36674251_36674345_36689050
transcript_43922.known	chr18	+	641	5	FSM	ENSMUSG00000024483.20	ENSMUST00000134146.8	641	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	44.7178655572915	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTAGTGGAGGTTATTTA	NA	False	NA	NA	False	AATAAA	-26	NA	36693039	36716734	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_36693155_36708071_36708223_36711670_36711828_36714120_36714269_36716664
transcript_43923.known	chr18	+	744	3	FSM	ENSMUSG00000090264.2	ENSMUST00000036765.8	744	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	104	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGGCTCCATTGTTGTCC	584	False	NA	33	True	AGTAAA	-15	NA	36797112	36798970	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_36797356_36798334_36798509_36798643
transcript_43924.nnic	chr18	-	813	3	Antisense	novelGene_ENSMUSG00000024483.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGGCTCCTCACTAATTC	7237	False	NA	NA	False	AATAAA	-15	NA	36693321	36692204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr18_-_36692806_36692929_36693072_36693251
transcript_43926.nnic	chr18	-	948	2	Antisense	novelGene_ENSMUSG00000024483.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	20	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGGCTCCTCACTAATTC	7282	False	NA	NA	False	AATAAA	-15	NA	36693276	36692204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr18_-_36692806_36692929
transcript_43930.known	chr18	-	760	4	FSM	ENSMUSG00000006050.13	ENSMUST00000236330.2	760	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	696.127542592272	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCCATTCTGATGTCAGA	NA	False	NA	-12	True	NA	NA	NA	36803343	36800301	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_36800713_36800843_36800953_36801704_36801902_36803300
transcript_43932.known	chr18	-	695	5	FSM	ENSMUSG00000006050.13	ENSMUST00000006209.5	695	5	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_2	590.993443280042	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGACTTCCTATGCCTT	NA	False	NA	NA	False	NA	NA	NA	36803338	36800481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_36800713_36800843_36800947_36801704_36801902_36803056_36803183_36803300
transcript_43933.known	chr18	-	337	2	FSM	ENSMUSG00000006050.13	ENSMUST00000174125.2	337	2	0	0	0	0	multi-exon	FALSE	canonical	3	1172	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGGACTCCAAACTCTC	NA	False	NA	NA	False	AGTAAA	-13	NA	36803329	36802874	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_36803183_36803300
transcript_43935.known	chr18	-	2067	13	FSM	ENSMUSG00000117679.2	ENSMUST00000001415.9	2067	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	18.7888486431003	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGTGATGAGTATATTGAC	NA	False	NA	-2	True	AATAAA	-19	NA	36812419	36804206	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_36804729_36808002_36808195_36808333_36808450_36808715_36808800_36809223_36809309_36809415_36809531_36809669_36809676_36809917_36810046_36810162_36810310_36810497_36810559_36811446_36811524_36811602_36811767_36812049
transcript_43936.known	chr18	-	2258	12	FSM	ENSMUSG00000117679.2	ENSMUST00000236001.2	2258	12	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_10	13.4925752462923	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAGTGATGAGTATATTGA	NA	False	NA	-3	True	AATAAA	-18	NA	36812369	36804207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_36804729_36808002_36808195_36808333_36808450_36808715_36808800_36809223_36809309_36809415_36809531_36809669_36810046_36810162_36810310_36810497_36810559_36811446_36811524_36811602_36811767_36812049
transcript_43941.known	chr18	+	2362	4	FSM	ENSMUSG00000033272.13	ENSMUST00000050476.11	2362	4	0	0	0	0	multi-exon	TRUE	canonical	3	118	junction_3	140.362229804017	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCATGTACAGTTGTCCTG	NA	False	NA	11	True	AATAAA	-29	NA	36812631	36816906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_36812677_36813568_36813668_36814580_36814819_36814926
transcript_43947.known	chr18	+	312	3	FSM	ENSMUSG00000033272.13	ENSMUST00000185899.2	312	3	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_1	96	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCTTTGGGGAAAGCAGGA	NA	False	NA	NA	False	NA	NA	NA	36812661	36814778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_36812677_36813568_36813668_36814580
transcript_43950.known	chr18	+	403	3	FSM	ENSMUSG00000033272.13	ENSMUST00000170288.2	403	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	222	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACGGAAGGGGCCTGAC	NA	False	NA	NA	False	NA	NA	NA	36812635	36814755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_36812677_36813480_36813668_36814580
transcript_43952.known	chr18	-	2016	13	FSM	ENSMUSG00000044719.6	ENSMUST00000115682.2	2016	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.75378527364305	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCCTGCCCCCAACTTC	NA	False	NA	NA	False	NA	NA	NA	36828978	36817975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_36818622_36818699_36818859_36819741_36819907_36820298_36820370_36821210_36821269_36821937_36822016_36822086_36822296_36824493_36824628_36825451_36825539_36826090_36826174_36827736_36827815_36828592_36828713_36828850
transcript_43954.known	chr18	-	1641	2	FSM	ENSMUSG00000051439.8	ENSMUST00000061829.8	1641	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATGTGTTTGTTGGTTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	36859851	36858119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_36859451_36859541
transcript_43955.known	chr18	+	1823	12	FSM	ENSMUSG00000006850.9	ENSMUST00000007046.9	1823	12	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_4	9.25845604107201	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTTTGCCTCAGTGTTGC	NA	False	NA	53	True	AATAAA	-20	NA	36868120	36875450	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_36868310_36868440_36868554_36870509_36870626_36870721_36870906_36871148_36871254_36871414_36871501_36871680_36871798_36872005_36872118_36872207_36872395_36874104_36874200_36874714_36874883_36875099
transcript_43965.known	chr18	+	992	2	FSM	ENSMUSG00000006850.9	ENSMUST00000237870.2	992	2	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTTGTTGTTGTTAATG	NA	False	NA	NA	False	AATAAA	-15	NA	36868127	36869250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_36868310_36868440
transcript_43966.known	chr18	-	572	3	FSM	ENSMUSG00000014294.5	ENSMUST00000014438.5	572	3	0	0	0	0	multi-exon	FALSE	canonical	3	2929	junction_2	68.5	17565	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGATGTCGTACGTCAT	NA	False	NA	NA	False	NA	NA	NA	36877610	36875384	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_36875712_36877233_36877341_36877472
transcript_43967.known	chr18	+	613	4	FSM	ENSMUSG00000006850.9	ENSMUST00000237255.2	613	4	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_3	3.09120616516523	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAACAAAACCATGCACACC	NA	False	NA	NA	False	NA	NA	NA	36868212	36871008	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_36868310_36868440_36868554_36870509_36870626_36870721
transcript_43972.known	chr18	+	1955	20	FSM	ENSMUSG00000024474.8	ENSMUST00000224284.3	1955	20	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_14	168.043095646503	4790	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTTCTGTGTTGGGCA	NA	False	NA	6	True	ATTAAA	-16	NA	36877744	36890688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_36877842_36878663_36878731_36880400_36880494_36881216_36881277_36881603_36881772_36881923_36882039_36882266_36882338_36882443_36882491_36884156_36884321_36885409_36885519_36886314_36886355_36886479_36886706_36886944_36886964_36887605_36887685_36888478_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
transcript_44.known	ERCC-00092	+	1108	1	FSM	ERCC-00092A	DQ459425	1108	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1442	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00092_+_0_1100
transcript_44003.known	chr18	+	2349	18	FSM	ENSMUSG00000024474.8	ENSMUST00000235165.2	2349	18	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_12	177.004818811107	2868	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTTCTGTGTTGGGCA	NA	False	NA	6	True	ATTAAA	-16	NA	36877730	36890688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_36877842_36878663_36878731_36880400_36880494_36881216_36881277_36881603_36882338_36882443_36882491_36884156_36884321_36885409_36885519_36886314_36886355_36886479_36886706_36886944_36886964_36887605_36887685_36888478_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
transcript_44005.known	chr18	-	1451	4	FSM	ENSMUSG00000044595.11	ENSMUST00000061522.8	1451	4	0	0	0	0	multi-exon	TRUE	canonical	3	43	junction_2	7.76029781788188	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATGTGTCTGCTTGGTAT	NA	False	NA	-8	True	ATTAAA	-14	NA	36899251	36896725	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_36897541_36898148_36898611_36898945_36899064_36899195
transcript_44007.known	chr18	-	1804	3	FSM	ENSMUSG00000044595.11	ENSMUST00000155827.2	1804	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGTCTGCTTGGTATAC	NA	False	NA	-6	True	ATTAAA	-16	NA	36899267	36896723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_36897541_36898148_36899064_36899195
transcript_44008.known	chr18	+	1619	7	FSM	ENSMUSG00000042660.9	ENSMUST00000049323.9	1619	7	0	0	0	0	multi-exon	FALSE	canonical	3	263	junction_5	28.487814158962	762	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGGTGCCAAGCTGGGA	NA	False	NA	4	True	AATAAA	-19	NA	36893272	36896863	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_36893534_36895029_36895131_36895218_36895307_36895407_36895588_36895710_36895811_36895901_36896072_36896144
transcript_44011.known	chr18	+	3336	13	FSM	ENSMUSG00000019143.16	ENSMUST00000152954.8	3336	13	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_10	16.7752711519731	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAGACCCTTTGCCTGAC	NA	False	NA	NA	False	NA	NA	NA	36916060	36925615	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_36916548_36918617_36918696_36918921_36919042_36919163_36919260_36920554_36920681_36920951_36921060_36921218_36921318_36921629_36921724_36922209_36922338_36922419_36922663_36923186_36923304_36923521_36923669_36924122
transcript_44014.known	chr18	-	1989	13	FSM	ENSMUSG00000001380.8	ENSMUST00000001416.8	1989	13	0	0	0	0	multi-exon	FALSE	canonical	3	550	junction_8	68.8118913334671	1350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCTGTGTCCTTGATGC	NA	False	NA	-2	True	AATAAA	-16	NA	36916258	36899580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_36900007_36900242_36900390_36901139_36901257_36903134_36903378_36903469_36903598_36903857_36903952_36904148_36904248_36904380_36904489_36905310_36905437_36906572_36906669_36909229_36909350_36915732_36915823_36916063
transcript_44018.known	chr18	+	2002	12	FSM	ENSMUSG00000019143.16	ENSMUST00000019287.9	2002	12	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_9	36.3770429831556	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATGGTCTTTTGAGGTTT	NA	False	NA	NA	False	GGGGCT	-45	NA	36916283	36924747	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_36916548_36918617_36918696_36918921_36919042_36919163_36919260_36920554_36920681_36920951_36921060_36921218_36921318_36921629_36921724_36922209_36922338_36923186_36923304_36923521_36923669_36924122
transcript_44037.known	chr18	-	703	4	FSM	ENSMUSG00000001380.8	ENSMUST00000236395.2	703	4	0	0	0	0	multi-exon	FALSE	canonical	3	624	junction_1	64.6030615029625	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TCAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	36916173	36906285	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_36906669_36909229_36909350_36915732_36915823_36916063
transcript_44039.known	chr18	+	2310	6	FSM	ENSMUSG00000001383.10	ENSMUST00000001419.10	2310	6	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_5	81.4331627778266	1893	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTGACTTTTCTTTGAT	6616	False	NA	22	True	AATAAA	-22	NA	36926928	36932719	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_36927013_36927349_36927444_36928093_36928218_36929089_36929164_36929551_36929698_36930931
transcript_44040.known	chr18	+	482	2	FSM	ENSMUSG00000104225.2	ENSMUST00000191880.2	482	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTAGATATTTTGCTTAA	332	False	NA	NA	False	AATAAA	-14	NA	37751958	37752819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_37752061_37752439
transcript_44042.known	chr18	-	3302	2	FSM	ENSMUSG00000051316.9	ENSMUST00000066272.6	3302	2	0	0	0	0	multi-exon	FALSE	canonical	3	1260	junction_1	0	1048	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGTGAATCTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	37777257	37773543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_37776586_37776997
transcript_44045.known	chr18	-	475	1	FSM	ENSMUSG00000102827.2	ENSMUST00000193056.2	475	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCATCTTCCCAGCCTCCA	NA	False	NA	NA	False	NA	NA	NA	37785960	37785485	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_37785500_37786000
transcript_44046.known	chr18	+	4732	4	FSM	ENSMUSG00000102222.2	ENSMUST00000193404.2	4732	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	104.703815063678	521	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGACCGCGTCTGTTTAA	5497	False	NA	17	True	AATAAA	-20	NA	37880045	37974926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_37882659_37958073_37958133_37966317_37966407_37972955
transcript_44047.known	chr18	+	5080	4	FSM	ENSMUSG00000102428.2	ENSMUST00000044851.8	5080	4	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	53.597263611743	590	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGACCGCGTCTGTTTAA	7721	False	NA	17	True	AATAAA	-20	NA	37898632	37974926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_37901594_37958073_37958133_37966317_37966407_37972955
transcript_44049.nic	chr18	-	2189	16	ISM	ENSMUSG00000024456.17	ENSMUST00000025337.14	5596	28	-73	47155	22	5399	5prime_fragment	FALSE	canonical	3	41	junction_2	3.66727267719335	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCCTGGAGGTACAGGT	NA	False	NA	NA	False	GGGGCT	-23	NA	38068507	38023810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_-_38024223_38024845_38025026_38026402_38026468_38027146_38027263_38028234_38028352_38029147_38029267_38029413_38029525_38030546_38030656_38033697_38033838_38035137_38035202_38036116_38036204_38036379_38036511_38036808_38036911_38038056_38038213_38039440_38039468_38068254
transcript_44051.nic	chr18	-	1556	11	ISM	ENSMUSG00000024456.17	ENSMUST00000025337.14	5596	28	-73	52235	22	319	5prime_fragment	FALSE	canonical	3	45	junction_4	3.38378486313773	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATATATATATATATATAT	NA	False	NA	NA	False	NA	NA	NA	38068507	38028890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_-_38029267_38029413_38029525_38030546_38030656_38033697_38033838_38035137_38035202_38036116_38036204_38036379_38036511_38036808_38036911_38038056_38038213_38039440_38039468_38068254
transcript_44053.known	chr18	-	2032	15	FSM	ENSMUSG00000024454.17	ENSMUST00000043498.9	2032	15	0	0	0	0	multi-exon	FALSE	canonical	3	500	junction_2	40.0044002681746	299	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTATTAGTTAGGCCATG	NA	False	NA	-5	True	AATAAA	-21	NA	38088069	38070024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_38070737_38074005_38074164_38074431_38074512_38074760_38074820_38074930_38075021_38076508_38076574_38076730_38076805_38077181_38077263_38077944_38078079_38078392_38078449_38078563_38078621_38078746_38078829_38085523_38085667_38087734_38087818_38087911
transcript_44054.known	chr18	-	4270	20	FSM	ENSMUSG00000038524.14	ENSMUST00000043437.14	4270	20	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_13	2.48875587737619	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGTCATGTGTTCGTC	NA	False	NA	-2	True	AATAAA	-16	NA	38102827	38090486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_38092708_38092830_38092887_38094299_38094388_38095625_38095847_38095972_38096091_38096180_38096265_38096345_38096475_38097060_38097223_38097366_38097472_38097843_38097964_38098703_38098800_38098951_38099075_38099493_38099623_38100415_38100480_38100590_38100728_38100812_38100949_38101266_38101335_38101802_38101849_38102407_38102506_38102758
transcript_44056.known	chr18	+	1767	8	FSM	ENSMUSG00000044024.17	ENSMUST00000070709.9	1767	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	1.03015750727543	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGCTCCAGCTCCTTCT	NA	False	NA	NA	False	AATAAA	-30	NA	38088611	38092232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_38088963_38089380_38089621_38089981_38090048_38090141_38090209_38090641_38090828_38091066_38091443_38091564_38091625_38091811
transcript_4406.known	chr1	+	1696	11	FSM	ENSMUSG00000018189.13	ENSMUST00000189936.7	1696	11	0	0	0	0	multi-exon	FALSE	canonical	3	615	junction_8	216.947090323885	1769	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTTGGATTATTTGTTT	NA	False	NA	NA	False	AATAAA	-24	NA	143653009	143683043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675658_143675773_143677872_143677972_143682421
transcript_44060.known	chr18	+	2394	13	FSM	ENSMUSG00000024442.7	ENSMUST00000025314.7	2394	13	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_6	27.9179104200551	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTCTTGCCCTTGAGTGTG	3967	False	NA	20	True	AATAAA	-21	NA	38383311	38395682	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_38383453_38384138_38384254_38384335_38384454_38385873_38386019_38386960_38387123_38387332_38387422_38387522_38387620_38390310_38390454_38391080_38391240_38391322_38391416_38392949_38393110_38394116_38394339_38394932
transcript_44063.known	chr18	+	1837	7	FSM	ENSMUSG00000024442.7	ENSMUST00000236078.2	1837	7	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_6	32.9515637801236	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTTTGAAGATATTGAATA	3983	False	NA	NA	False	NA	NA	NA	38383327	38388605	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_38383453_38384138_38384254_38384335_38384454_38385873_38386019_38386960_38387123_38387332_38387422_38387522
transcript_44066.known	chr18	-	886	4	FSM	ENSMUSG00000097080.9	ENSMUST00000235608.2	886	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.4142135623731	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCGTGTTCCCATCTGCTG	NA	False	NA	NA	False	CATAAA	-30	NA	38383226	38372110	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_38372243_38372625_38372805_38373891_38374007_38382766
transcript_4407.known	chr1	+	436	3	FSM	ENSMUSG00000018189.13	ENSMUST00000189433.2	436	3	0	0	0	0	multi-exon	FALSE	canonical	3	1300	junction_2	18.5	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTATCTTCTGTTATA	NA	False	NA	NA	False	NA	NA	NA	143653042	143662067	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_143653215_143659703_143659768_143661867
transcript_44071.known	chr18	+	780	3	FSM	ENSMUSG00000024442.7	ENSMUST00000235762.2	780	3	0	0	0	0	multi-exon	FALSE	canonical	3	386	junction_1	3.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGACACGTTCAAGCTGTA	3985	False	NA	NA	False	NA	NA	NA	38383329	38384877	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_38383453_38384138_38384254_38384335
transcript_44073.known	chr18	-	461	3	FSM	ENSMUSG00000097080.9	ENSMUST00000235525.2	461	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGAGTTTTCATTGATTCG	NA	False	NA	NA	False	CATAAA	-15	NA	38382931	38372125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_38372243_38372625_38372805_38382766
transcript_44076.known	chr18	-	1173	2	FSM	ENSMUSG00000097080.9	ENSMUST00000181757.8	1173	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATATAAGATAGGAACGAT	NA	False	NA	NA	False	NA	NA	NA	38383618	38371457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_38372243_38383230
transcript_44077.known	chr18	-	1229	2	FSM	ENSMUSG00000097080.9	ENSMUST00000181871.3	1229	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAATACGTAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	38383251	38371498	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_38372243_38382766
transcript_44079.known	chr18	+	555	1	FSM	ENSMUSG00000066475.7	ENSMUST00000085340.7	555	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTCAGCATAAAATAAATGC	NA	False	NA	NA	False	AAGAAA	-34	NA	38377880	38378435	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_38377900_38378400
transcript_4408.known	chr1	+	1845	11	FSM	ENSMUSG00000018189.13	ENSMUST00000018333.13	1845	11	0	0	0	0	multi-exon	FALSE	canonical	3	576	junction_8	227.497274708951	1318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTTTGTTACCTAATTC	NA	False	NA	NA	False	ATTAAA	-13	NA	143653018	143683204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675661_143675773_143677872_143677972_143682421
transcript_44085.known	chr18	+	3040	9	FSM	ENSMUSG00000060450.15	ENSMUST00000072376.13	3040	9	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_3	53.7248487666555	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGACACGGTGTCCTGTTG	926	False	NA	23	True	AATAAA	-28	NA	38429687	38450902	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_38429852_38432806_38432980_38433481_38433644_38434708_38434861_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
transcript_4409.known	chr1	+	882	7	FSM	ENSMUSG00000018189.13	ENSMUST00000185539.2	882	7	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_5	477.081288205224	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTCCATTCTTCAATTC	NA	False	NA	25	True	NA	NA	NA	143670454	143682679	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_143670549_143672499_143672564_143674128_143674232_143675658_143675773_143677872_143677972_143678665_143678816_143682421
transcript_44090.known	chr18	+	2822	8	FSM	ENSMUSG00000060450.15	ENSMUST00000236649.2	2822	8	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_3	44.1310663864829	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGAAGTAGACACGGTGT	985	False	NA	16	True	AATAAA	-21	NA	38429746	38450895	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_38429852_38432806_38432980_38433481_38433644_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
transcript_44093.nnic	chr18	+	2527	6	NIC	ENSMUSG00000060450.15	novel	2822	8	NA	NA	-16	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_1	90.4486594704421	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGAAGTAGACACGGTGT	945	False	NA	16	True	AATAAA	-21	NA	38429706	38450895	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr18_+_38429852_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
transcript_44096.nnic	chr18	+	832	6	NNC	ENSMUSG00000060450.15	novel	662	6	NA	NA	-7	-381	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	74.6619046100486	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTGTCTTTGTCTACTA	954	False	NA	NA	False	AATAAA	-15	NA	38429715	38434370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_38429852_38430552_38430629_38431361_38431449_38432806_38432980_38433481_38433644_38434172
transcript_44098.known	chr18	+	743	5	FSM	ENSMUSG00000060450.15	ENSMUST00000236353.2	743	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	85.48684109265	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAATAAATATGTCTTACA	972	False	NA	NA	False	NA	NA	NA	38429733	38437282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_38429852_38432806_38432980_38433481_38433644_38434708_38434861_38437144
transcript_4410.known	chr1	-	2856	18	FSM	ENSMUSG00000056220.15	ENSMUST00000070200.15	2856	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.05882352941176	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGTCTTTTCTGTCATT	3932	False	NA	NA	False	AATAAA	-30	NA	149837041	149705368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_149705944_149716368_149716527_149717914_149718111_149727017_149727203_149733195_149733436_149736805_149736878_149740661_149740755_149740866_149741005_149747151_149747267_149748288_149748512_149755740_149755878_149761897_149762040_149763357_149763396_149776850_149776965_149778044_149778194_149797805_149797888_149808408_149808508_149836941
transcript_44101.known	chr18	+	618	4	FSM	ENSMUSG00000060450.15	ENSMUST00000237416.2	618	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	98.2694707876708	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCAAAGGATCAGAAATGAAA	991	False	NA	NA	False	GATAAA	-9	NA	38429752	38449867	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_38429852_38432806_38432980_38433481_38433538_38449577
transcript_44103.nnic	chr18	+	708	4	NNC	ENSMUSG00000060450.15	novel	743	5	NA	NA	-11	-381	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	97.7991138337494	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTGTCTTTGTCTACTA	915	False	NA	NA	False	AATAAA	-15	NA	38429676	38434370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_38429852_38432806_38432980_38433481_38433644_38434172
transcript_44110.known	chr18	-	2289	7	FSM	ENSMUSG00000052102.16	ENSMUST00000063814.15	2289	7	0	0	0	0	multi-exon	FALSE	canonical	3	1055	junction_1	137.188434886716	1614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAAATGTGTCTTTTGT	NA	False	NA	-30	True	ATTAAA	-13	NA	38472056	38460610	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_38462027_38463538_38463714_38465020_38465206_38466206_38466390_38468068_38468171_38471143_38471276_38471960
transcript_44111.known	chr18	-	1929	5	FSM	ENSMUSG00000052102.16	ENSMUST00000237487.2	1929	5	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	550.877028019866	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGCATTCTCCTGAGTT	NA	False	NA	-7	True	AATAAA	-17	NA	38472033	38460587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_38462027_38466206_38466390_38468068_38468171_38471143_38471276_38471960
transcript_44112.known	chr18	-	2085	6	FSM	ENSMUSG00000052102.16	ENSMUST00000235590.2	2085	6	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	488.205448556241	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTTTTGTGAATTTTG	NA	False	NA	-22	True	AATAAA	-2	NA	38472029	38460602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_38462027_38463538_38463714_38466206_38466390_38468068_38468171_38471143_38471276_38471960
transcript_44113.known	chr18	+	838	8	FSM	ENSMUSG00000024425.5	ENSMUST00000236480.2	838	8	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_5	228.987121997758	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGCTTTAAAAAATAAAGTAC	9144	False	NA	-22	True	NA	NA	NA	38552036	38597427	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_38552230_38575969_38576058_38580743_38580875_38584607_38584696_38585357_38585425_38589107_38589175_38593597_38593704_38597329
transcript_44118.nnic	chr18	+	864	5	NNC	ENSMUSG00000036452.19	novel	607	5	NA	NA	-5238	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	11.5758369027902	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGACTTTGAGCGTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	39419249	39440426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_39419308_39419579_39419740_39429837_39429977_39439754_39439906_39440070
transcript_44119.nic	chr18	+	1094	4	NIC	ENSMUSG00000036452.19	novel	2515	12	NA	NA	-5196	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_3	5.8878405775519	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGACTTTGAGCGTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	39419291	39440426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr18_+_39419740_39429837_39429977_39439754_39439906_39440070
transcript_44120.known	chr18	+	7898	23	FSM	ENSMUSG00000036452.19	ENSMUST00000097593.9	7898	23	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_21	8.35189393080426	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGTGTGTTTGTTTCTTGG	NA	False	NA	4	True	ATTAAA	-16	NA	39126197	39509337	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_39126683_39230682_39230779_39232624_39232687_39235221_39235294_39243507_39243610_39244842_39244954_39253171_39253277_39254826_39254957_39259885_39259987_39265108_39265204_39283092_39283172_39338336_39338374_39360420_39360487_39362943_39363019_39376658_39376747_39378335_39378395_39379871_39379978_39419579_39419740_39429837_39429977_39439754_39439906_39490605_39490882_39496169_39496262_39504126
transcript_44125.known	chr18	-	3328	6	FSM	ENSMUSG00000024487.6	ENSMUST00000025364.6	3328	6	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_2	22.8962879087419	545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTTGTGTCTTTCTTGCC	NA	False	NA	NA	False	NA	NA	NA	40352482	40336948	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_40339454_40340739_40340922_40343800_40343947_40345095_40345269_40351798_40351919_40352280
transcript_4413.known	chr1	+	7480	51	FSM	ENSMUSG00000006005.19	ENSMUST00000119161.9	7480	51	0	0	0	0	multi-exon	TRUE	canonical	3	414	junction_6	73.7537117710017	546	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTTTTCTTCATTTCA	NA	False	NA	25	True	AATAAA	-24	NA	150269000	150325686	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_150269410_150270949_150271055_150274350_150274425_150278005_150278103_150279348_150279453_150279625_150279791_150282212_150282306_150283079_150283161_150283240_150283329_150284494_150284636_150284953_150285046_150285730_150285929_150287651_150287760_150288641_150288869_150289394_150289559_150290166_150290301_150290416_150290566_150291819_150291983_150293132_150293268_150293698_150293840_150295588_150295755_150297386_150297554_150298278_150298432_150298807_150298925_150299236_150299441_150299547_150299733_150300413_150300562_150301387_150301526_150302613_150302746_150303870_150304002_150305085_150305297_150306311_150306456_150306912_150307100_150308161_150308368_150308569_150308632_150309428_150309638_150311393_150311667_150312468_150312618_150313153_150313238_150314832_150315028_150315817_150315950_150316189_150316281_150317809_150317995_150318934_150319004_150319085_150319181_150320118_150320226_150321618_150321715_150321835_150321993_150323262_150323382_150324893_150324990_150325482
transcript_44130.known	chr18	-	426	2	FSM	ENSMUSG00000024487.6	ENSMUST00000237176.2	426	2	0	0	0	0	multi-exon	FALSE	canonical	3	292	junction_1	0	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTTATGATTTATTTCCT	NA	False	NA	NA	False	NA	NA	NA	40352396	40351608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_40351919_40352280
transcript_44137.known	chr18	-	868	7	FSM	ENSMUSG00000056671.8	ENSMUST00000235606.2	868	7	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_2	31.5722275988812	4517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATGCTTTCTCCAAATGT	NA	False	NA	-14	True	AATAAA	-23	NA	42084307	42008664	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_42008919_42014277_42014351_42045434_42045541_42065665_42065827_42068232_42068307_42070698_42070757_42084165
transcript_44144.known	chr18	-	651	6	FSM	ENSMUSG00000056671.8	ENSMUST00000070949.6	651	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	146.609140233479	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCTGCTTCAAATCACAGG	NA	False	NA	-110	True	NA	NA	NA	42084259	42008760	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_42008919_42045434_42045541_42065665_42065827_42068232_42068307_42070698_42070757_42084165
transcript_44153.known	chr18	+	438	1	FSM	ENSMUSG00000096699.2	ENSMUST00000091925.6	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1379	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGGATGCTGGGTTAA	NA	False	NA	NA	False	NA	NA	NA	42385462	42385900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_42385500_42385900
transcript_44154.known	chr18	-	3980	32	FSM	ENSMUSG00000024493.10	ENSMUST00000097590.5	3980	32	0	0	0	0	multi-exon	FALSE	canonical	1	536	junction_20	328.950941881023	653	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTTTTTAATCTTTATAC	NA	False	NA	41	True	AATAAA	-17	NA	42395259	42335362	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42347936_42349916_42350028_42350532_42350674_42351568_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
transcript_44155.known	chr18	-	452	2	FSM	ENSMUSG00000024493.10	ENSMUST00000237520.2	452	2	0	0	0	0	multi-exon	FALSE	canonical	3	1504	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGTGTGCGTCATGACAT	NA	False	NA	NA	False	AATAAA	-33	NA	42395156	42389938	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_42390260_42395025
transcript_44157.known	chr18	-	414	2	FSM	ENSMUSG00000117662.2	ENSMUST00000236263.2	414	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGTAACTGAGTTTTTATT	NA	False	NA	NA	False	TTTAAA	-22	NA	42408262	42407446	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_42407614_42408015
transcript_44158.known	chr18	-	792	1	FSM	ENSMUSG00000117662.2	ENSMUST00000236054.2	792	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATAGGTAACTGAGTTT	NA	False	NA	NA	False	TTTAAA	-17	NA	42408243	42407451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_42407500_42408200
transcript_44159.known	chr18	+	6301	21	FSM	ENSMUSG00000024491.17	ENSMUST00000236240.2	6301	21	0	0	0	0	multi-exon	TRUE	canonical	3	82	junction_6	14.1470845052965	758	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGTTCACAATTGGGGGG	NA	False	NA	2	True	AATAAA	-13	NA	42408436	42474496	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_42408658_42421172_42421292_42425047_42425173_42431497_42431590_42432207_42432402_42433314_42433576_42434787_42435082_42438744_42438880_42447035_42447201_42450665_42450816_42452866_42453012_42453828_42453983_42454976_42455274_42457119_42457264_42458969_42459090_42460228_42460304_42460418_42460584_42465844_42465950_42466273_42466463_42470027_42470139_42471456
transcript_4416.known	chr1	-	3273	14	FSM	ENSMUSG00000006010.15	ENSMUST00000111913.9	3273	14	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_9	14.7515920312223	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGGAATTTTAAAATAGGA	633	False	NA	NA	False	AATAAA	-21	NA	150268831	150237055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_150238640_150239241_150239350_150247779_150247951_150250545_150250637_150251246_150251376_150256062_150256129_150257249_150257346_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264409_150265986_150266108_150268440
transcript_44160.known	chr18	+	489	1	FSM	ENSMUSG00000056849.7	ENSMUST00000080097.7	489	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTACACAAAGAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	42574083	42574572	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_42574100_42574600
transcript_44161.known	chr18	+	4417	22	FSM	ENSMUSG00000024498.17	ENSMUST00000237602.2	4417	22	0	0	0	0	multi-exon	FALSE	canonical	3	436	junction_6	86.5887404766016	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTCTCCCTTTCTTTTGTG	NA	False	NA	NA	False	TATAAA	-25	NA	42644551	42708858	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957_42657418_42663712_42663956_42668149_42668213_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902_42682960_42683106_42683174_42685556_42685693_42686472_42686563_42693998_42694118_42697147_42697299_42700935_42701101_42701492_42701676_42704079_42704260_42704888_42704973_42706324_42706426_42707582
transcript_44164.known	chr18	+	4101	21	FSM	ENSMUSG00000024498.17	ENSMUST00000025375.15	4101	21	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_5	111.046881991346	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGATTGTAAATGATTAT	NA	False	NA	10	True	AATAAA	-17	NA	42644565	42708619	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957_42657418_42663712_42663956_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902_42682960_42683106_42683174_42685556_42685693_42686472_42686563_42693998_42694118_42697147_42697299_42700935_42701101_42701492_42701676_42704079_42704260_42704888_42704973_42706324_42706426_42707582
transcript_44166.known	chr18	-	2106	14	FSM	ENSMUSG00000024501.21	ENSMUST00000025379.14	2106	14	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	2.11223541811477	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAGCCAAAATGGTACAC	NA	False	NA	NA	False	AAGAAA	-10	NA	43526442	43457352	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_43457486_43458789_43458953_43461389_43461570_43462755_43462927_43465936_43466079_43466945_43467103_43475306_43475428_43478170_43478240_43486945_43487027_43487807_43487870_43491298_43491464_43494026_43494212_43496567_43496657_43526054
transcript_44167.known	chr18	-	2379	1	FSM	ENSMUSG00000043424.11	ENSMUST00000057110.11	2379	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	977	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGGTACAGGCGTTCT	NA	False	NA	NA	False	ATTAAA	-18	NA	43610861	43608482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_43608500_43610900
transcript_44168.known	chr18	-	729	4	FSM	ENSMUSG00000024503.4	ENSMUST00000025381.4	729	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTTCTTCCCAAACTTT	NA	False	NA	NA	False	AATAAA	-15	NA	43870622	43861146	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_43861271_43866588_43866696_43868264_43868300_43870159
transcript_44170.known	chr18	+	8616	11	FSM	ENSMUSG00000024472.10	ENSMUST00000025350.10	8616	11	0	0	0	0	multi-exon	FALSE	canonical	2	46	junction_10	33.3472637558166	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTGGTTTTTTTGTTCT	NA	False	NA	15	True	AATAAA	-20	NA	44513593	44558036	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_44513754_44528939_44529092_44532690_44532819_44533383_44533483_44538276_44538430_44538523_44538637_44538719_44538828_44543249_44543386_44545582_44545694_44548443_44548496_44550632
transcript_44174.known	chr18	+	398	2	FSM	ENSMUSG00000024472.10	ENSMUST00000202306.2	398	2	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_1	0	1676	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCCCCTTTTTGTTTTTC	NA	False	NA	13	True	AATAAA	-14	NA	44513568	44529152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_44513754_44528939
transcript_44175.known	chr18	+	7215	30	FSM	ENSMUSG00000034653.12	ENSMUST00000037763.11	7215	30	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	9.69634080312122	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATGAAGTTATTCAGATCT	NA	False	NA	30	True	AATAAA	-32	NA	44960812	45022784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_44961986_44963218_44963310_44966088_44966286_44967525_44967726_44970407_44970575_44973251_44973355_44974329_44974487_44977352_44977461_44978746_44978896_44980810_44980947_44983374_44983502_44983702_44983769_44987669_44987849_44988058_44988156_44988237_44988326_44988410_44988492_44990075_44990159_44991254_44991361_44992997_44993118_44993443_44993717_44995671_44995799_44997331_44997538_44997927_44998124_45004516_45004627_45005907_45006201_45010684_45010863_45018189_45018394_45019306_45019490_45020674_45020763_45020855
transcript_44177.nic	chr18	+	2164	3	ISM	ENSMUSG00000034653.12	ENSMUST00000201507.2	4290	17	31231	7	31041	0	3prime_fragment	FALSE	canonical	3	64	junction_1	1	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATGAAGTTATTCAGATCT	NA	False	NA	30	True	AATAAA	-32	NA	45019342	45022784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_+_45019490_45020674_45020763_45020855
transcript_44179.nnic	chr18	-	478	2	Intergenic	novelGene_65	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	15	junction_1	0	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTACCATGGTGTGTCCTT	NA	False	NA	-4	True	AATAAA	-23	NA	45692434	45691129	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr18_-_45691359_45692185
transcript_4418.nic	chr1	-	2036	14	NIC	ENSMUSG00000006010.15	novel	3273	14	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_12	29.9368170945323	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTAGTGCTATTGAACC	616	False	NA	NA	False	NA	NA	NA	150268848	150238271	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_150238640_150239241_150239350_150247779_150247951_150250545_150250637_150251246_150251376_150256062_150256129_150257249_150257346_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264371_150265986_150266108_150268440
transcript_44181.known	chr18	-	7477	9	FSM	ENSMUSG00000024477.5	ENSMUST00000236216.2	7477	9	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_2	12.5642100826116	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACTACATGAGAAAATCC	NA	False	NA	NA	False	AATAAA	-9	NA	46414060	46368417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_46374769_46379628_46379738_46381937_46382123_46387345_46387392_46391151_46391285_46392670_46392823_46395956_46396025_46407656_46407776_46413746
transcript_44188.nnic	chr18	-	666	3	NNC	ENSMUSG00000024477.5	novel	1039	2	NA	NA	-19	5202	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	69	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAAGTCCTGCTGAATCC	NA	False	NA	NA	False	TTTAAA	-5	NA	46413916	46401355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_-_46401733_46407656_46407776_46413746
transcript_4419.nic	chr1	-	1803	14	NIC	ENSMUSG00000006010.15	novel	1809	14	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_13	31.3627374725987	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTAGTGCTATTGAACC	973	False	NA	NA	False	NA	NA	NA	150268491	150238271	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_150238640_150239241_150239350_150247779_150247951_150250545_150250637_150251246_150251376_150256062_150256129_150257249_150257346_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264409_150265986_150266108_150268354
transcript_44190.known	chr18	-	1845	3	FSM	ENSMUSG00000024477.5	ENSMUST00000237757.2	1845	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	63.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAACCCAAGGAAA	NA	False	NA	NA	False	AAAAAG	-36	NA	46413894	46394450	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_46396025_46407652_46407776_46413746
transcript_44191.known	chr18	-	2801	10	FSM	ENSMUSG00000071855.6	ENSMUST00000072835.7	2801	10	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_3	12.4909844030815	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGGTTGTACGTTGTCTA	2713	False	NA	5	True	NA	NA	NA	46444995	46415217	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_46416354_46416743_46416863_46418679_46418776_46420416_46420831_46423818_46424210_46424590_46424667_46426470_46426561_46429335_46429458_46432340_46432463_46444760
transcript_44194.known	chr18	-	5726	3	FSM	ENSMUSG00000033319.6	ENSMUST00000036226.6	5726	3	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	21.5	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAGTGTGCTCTCATTAA	NA	False	NA	-3	True	AATAAA	-18	NA	46659038	46634812	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_46639457_46657168_46657897_46658684
transcript_44196.known	chr18	-	4204	3	FSM	ENSMUSG00000056130.11	ENSMUST00000070084.11	4204	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	2	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGACTTCTGGCTGATTT	9505	False	NA	NA	False	ATTAAA	-32	NA	46707600	46690357	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_46694140_46705867_46705971_46707281
transcript_44197.known	chr18	+	726	5	FSM	ENSMUSG00000057561.11	ENSMUST00000235849.2	726	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	803.50855627056	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTAAAATCTCTCCAGAAC	NA	False	NA	NA	False	AAAAAG	-10	NA	46730776	46749523	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_46730868_46731707_46731768_46740570_46740810_46748859_46748995_46749322
transcript_44199.known	chr18	+	1905	4	FSM	ENSMUSG00000057561.11	ENSMUST00000235455.2	1905	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	698.014804045492	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTCTTTTTAATATGTT	NA	False	NA	17	True	AATAAA	-18	NA	46730821	46742245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_46730868_46731707_46731768_46732343_46732468_46740570
transcript_44203.known	chr18	+	2012	4	FSM	ENSMUSG00000057561.11	ENSMUST00000238168.2	2012	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	796.694141785639	691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGAGAGGCTTTTTTT	NA	False	NA	27	True	AATAAA	-21	NA	46730767	46742316	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_46730868_46731117_46731224_46731707_46731768_46740570
transcript_44207.known	chr18	+	2865	3	FSM	ENSMUSG00000057561.11	ENSMUST00000078079.11	2865	3	0	0	0	0	multi-exon	FALSE	canonical	3	1498	junction_1	106	3827	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAAATGTTTTTTTTTTCT	NA	False	NA	20	True	ATTAAA	-17	NA	46730770	46743278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_46730868_46731707_46731768_46740570
transcript_44209.known	chr18	+	2165	3	FSM	ENSMUSG00000057561.11	ENSMUST00000237478.2	2165	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	841.5	699	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGAGAGGCTTTTTTT	NA	False	NA	27	True	AATAAA	-21	NA	46730864	46742316	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_46731224_46731707_46731768_46740570
transcript_44212.known	chr18	-	1595	5	FSM	ENSMUSG00000033022.9	ENSMUST00000035804.9	1595	5	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_1	18.3166590840142	1210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGATGCACATGTTTTT	2577	False	NA	8	True	AATAAA	-30	NA	46861462	46846259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_46847029_46848663_46848834_46853353_46853509_46856384_46856463_46861039
transcript_44213.known	chr18	-	857	5	FSM	ENSMUSG00000033022.9	ENSMUST00000234064.2	857	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	79.0296621528904	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCCCTTGGAAGTTTCGC	2632	False	NA	NA	False	NA	NA	NA	46861407	46846991	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_46847029_46848663_46848883_46853353_46853509_46856384_46856463_46861039
transcript_44217.known	chr18	-	1466	4	FSM	ENSMUSG00000033022.9	ENSMUST00000234819.2	1466	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	76.3340611319016	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACATTGCCTTTTTGATG	2617	False	NA	-3	True	AATAAA	-19	NA	46861422	46846270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_46847029_46848663_46848834_46853353_46853509_46861039
transcript_44227.known	chr18	-	4765	4	FSM	ENSMUSG00000032905.6	ENSMUST00000035648.6	4765	4	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_1	11.8977121983832	548	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCTTGTAGCTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	46874646	46863210	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_46867577_46868321_46868385_46870461_46870599_46874447
transcript_44232.known	chr18	+	1520	6	FSM	ENSMUSG00000024480.10	ENSMUST00000025357.9	1520	6	0	0	0	0	multi-exon	FALSE	canonical	3	541	junction_4	49.1064150595419	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCTTTGCCTCCCATTC	NA	False	NA	NA	False	TATAAA	-13	NA	46874942	46923893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_46875149_46887437_46887530_46891069_46891182_46912254_46912327_46913727_46913836_46922963
transcript_44237.known	chr18	+	2053	9	FSM	ENSMUSG00000024481.6	ENSMUST00000234519.2	2053	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.707106781186548	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGCGCTGTGTTTGTTGTT	NA	False	NA	NA	False	AATAAA	-34	NA	46983105	47014803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_46983945_46997739_46997883_46999464_46999605_47006848_47006976_47009949_47010105_47011295_47011410_47013684_47013829_47014324_47014391_47014478
transcript_44239.nnic	chr18	+	645	5	NNC	ENSMUSG00000073568.3	novel	2257	5	NA	NA	-15	-5039	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	119.357393989648	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACCTTTTAAAACAGGGTT	NA	False	NA	NA	False	NA	NA	NA	47054866	47062250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_47054960_47059048_47059157_47059378_47059483_47061585_47061726_47062050
transcript_44240.known	chr18	+	2257	5	FSM	ENSMUSG00000073568.3	ENSMUST00000234910.2	2257	5	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_1	19.1441897190766	335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCAGGGTTTCTTTTTTC	NA	False	NA	26	True	AATAAA	-22	NA	47054881	47067299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_47054960_47059048_47059157_47059378_47059483_47061585_47061726_47065472
transcript_44250.known	chr18	+	1610	7	FSM	ENSMUSG00000042705.10	ENSMUST00000049388.9	1610	7	0	0	0	0	multi-exon	FALSE	canonical	3	1216	junction_3	103.11913282973	2736	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGCGTACAATGTTTTT	NA	False	NA	26	True	AATAAA	-27	NA	47091882	47221062	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_47091996_47093482_47093574_47096726_47096838_47100806_47100963_47123545_47123657_47219318_47219379_47220094
transcript_44251.known	chr18	+	792	6	FSM	ENSMUSG00000042705.10	ENSMUST00000234961.2	792	6	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_5	518.443593846042	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAACTTTATAAATATTT	NA	False	NA	-11	True	TTTAAA	-1	NA	47091927	47168874	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_47091996_47093482_47093574_47096726_47096838_47100806_47100963_47123545_47123657_47168619
transcript_44252.known	chr18	+	600	6	FSM	ENSMUSG00000042705.10	ENSMUST00000234280.2	600	6	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_3	477.712298355401	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAGACAAATAGCAGTGAT	NA	False	NA	NA	False	NA	NA	NA	47091941	47220267	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_47091996_47093482_47093574_47096726_47096838_47123545_47123657_47219318_47219379_47220094
transcript_44253.known	chr18	+	515	1	FSM	ENSMUSG00000117621.2	ENSMUST00000234633.2	515	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	56863	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAATAAAATGATGTAAATG	NA	False	NA	NA	False	NA	NA	NA	47245205	47245720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_47245200_47245700
transcript_44254.known	chr18	-	897	1	FSM	ENSMUSG00000117515.2	ENSMUST00000234328.2	897	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGTTAACCTAATTAAACA	NA	False	NA	NA	False	NA	NA	NA	47548428	47547531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_47547500_47548400
transcript_44258.nnic	chr18	+	722	3	NNC	ENSMUSG00000118139.2	novel	700	3	NA	NA	-1172	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5.5	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTAAGTGTCTCCTCAG	NA	False	NA	NA	False	NA	NA	NA	47865002	47878004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_47865190_47866864_47867032_47877636
transcript_44259.nnic	chr18	+	865	3	NNC	ENSMUSG00000118139.2	novel	700	3	NA	NA	-1067	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5.5	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTAAGTGTCTCCTCAG	NA	False	NA	NA	False	NA	NA	NA	47865107	47878004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_47865438_47866864_47867032_47877636
transcript_44263.nnic	chr18	+	1697	2	NNC	ENSMUSG00000059040.6	novel	1791	2	NA	NA	-2	7	at_least_one_novel_splicesite	FALSE	canonical	2	37	junction_1	0	2013	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAGAAAAAAA	NA	False	NA	NA	False	AATAAA	-37	NA	48179711	48181467	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_48180005_48180063
transcript_44265.known	chr18	+	1747	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42994	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	AATAAA	-30	NA	48179713	48181460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_48179700_48181500
transcript_44268.known	chr18	+	522	2	FSM	ENSMUSG00000087020.2	ENSMUST00000149935.2	522	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAATGAGTCCTGCTTCAT	3931	False	NA	NA	False	AATAAA	-15	NA	49888860	49890256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_49889264_49890137
transcript_44269.nic	chr18	+	350	3	ISM	ENSMUSG00000037416.14	ENSMUST00000180611.8	11319	43	352	120400	25	-88060	5prime_fragment	FALSE	canonical	3	64	junction_1	7	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTCAGTATTTTATTATT	NA	False	NA	NA	False	AAAAAG	-8	NA	49966088	49976921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_+_49966244_49973453_49973580_49976852
transcript_4427.known	chr1	-	2851	13	FSM	ENSMUSG00000006010.15	ENSMUST00000097547.10	2851	13	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	38.2014942988709	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTAATGTGGAATTTTA	951	False	NA	NA	False	AATAAA	-13	NA	150268513	150237063	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_150238640_150239241_150239350_150247779_150247951_150250545_150250637_150251246_150251376_150256062_150256129_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264409_150265986_150266108_150268440
transcript_44270.known	chr18	+	1002	2	FSM	ENSMUSG00000062210.14	ENSMUST00000148989.3	1002	2	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGCAAGATGTGAGAAAAAC	NA	False	NA	NA	False	AAAAAG	-40	NA	50112493	50224068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_50112694_50223266
transcript_44272.known	chr18	+	1921	2	FSM	ENSMUSG00000062210.14	ENSMUST00000148159.3	1921	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGGGATTTAGATTGTGTT	5009	False	NA	11	True	AATAAA	-24	NA	50186348	50224849	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_50186687_50223266
transcript_44273.known	chr18	+	2684	24	FSM	ENSMUSG00000024507.7	ENSMUST00000025385.7	2684	24	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_3	18.279183363144	357	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGCTCCTCTTTGCAT	NA	False	NA	14	True	AATAAA	-23	NA	50261267	50329336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_50261477_50263192_50263247_50272514_50272623_50273406_50273467_50275536_50275559_50275659_50275707_50277807_50277893_50279456_50279645_50288193_50288286_50291451_50291477_50293201_50293331_50295168_50295270_50297681_50297919_50299950_50300003_50303786_50303859_50305094_50305199_50306730_50306797_50310238_50310309_50310973_50311081_50312113_50312201_50314998_50315086_50316225_50316365_50324778_50324907_50328921
transcript_44288.known	chr18	+	875	1	FSM	ENSMUSG00000085939.4	ENSMUST00000145417.2	875	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7994	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCACCAAAGCAAACGAAAAT	NA	False	NA	NA	False	ATTAAA	-34	NA	50267792	50268667	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_50267800_50268700
transcript_44291.known	chr18	+	2656	8	FSM	ENSMUSG00000024528.9	ENSMUST00000025406.9	2656	8	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_5	82.8179710360657	587	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTATGTGGCCTGCATA	NA	False	NA	2	True	ATTAAA	-13	NA	52598764	52625003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_52598858_52608667_52608757_52609371_52609445_52616704_52616777_52620583_52620666_52621322_52622044_52623089_52623128_52623515
transcript_44301.known	chr18	+	2067	15	FSM	ENSMUSG00000034484.9	ENSMUST00000037850.7	2067	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	254.699312515598	1762	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGTTAGGGATCTTTTTTT	NA	False	NA	38	True	AATAAA	-18	NA	53309387	53353937	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_53309560_53322726_53322845_53327501_53327666_53330926_53330994_53331257_53331302_53332828_53332971_53336112_53336192_53342659_53342736_53343401_53343516_53343770_53343865_53345824_53346031_53349452_53349597_53351173_53351255_53351360_53351433_53353443
transcript_44317.known	chr18	+	1977	7	FSM	ENSMUSG00000024535.17	ENSMUST00000165032.9	1977	7	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_3	2.70801280154532	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTATTTGAGTTTGTCTTT	NA	False	NA	NA	False	AATAAA	-14	NA	53378733	53523992	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_53378925_53460483_53460568_53473201_53473307_53516141_53516237_53517688_53517722_53518249_53518315_53522588
transcript_44321.known	chr18	-	1403	5	FSM	ENSMUSG00000024538.9	ENSMUST00000025419.9	1403	5	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_3	12.8354976529934	2983	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTTTGCAAGACTTTG	NA	False	NA	-11	True	ATTAAA	-20	NA	53551187	53539403	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_53540138_53542196_53542382_53544058_53544153_53544577_53544692_53550911
transcript_44322.known	chr18	-	4554	21	FSM	ENSMUSG00000048799.9	ENSMUST00000049811.8	4554	21	0	0	0	0	multi-exon	FALSE	canonical	1	72	junction_13	46.6927189184781	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTGGTCGGTCTCTTT	NA	False	NA	-1	True	AATAAA	-24	NA	53877619	53814794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_53816537_53818954_53819101_53830666_53830766_53836193_53836317_53839891_53840054_53842128_53842222_53846453_53846544_53847835_53847989_53848071_53848169_53851518_53851702_53852287_53852438_53854694_53854873_53856154_53856378_53857425_53857654_53860618_53860817_53864162_53864312_53868714_53868857_53871549_53871665_53873123_53873281_53877353_53877420_53877559
transcript_44324.nic	chr18	-	1349	8	ISM	ENSMUSG00000048799.9	ENSMUST00000237145.2	3801	15	-59	15593	-14	-15593	5prime_fragment	FALSE	canonical	3	229	junction_7	17.7096768197848	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGACTCTGCTTTGCAGA	NA	False	NA	NA	False	AATAAA	-14	NA	53877694	53857266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_-_53857654_53860618_53860817_53864162_53864312_53868714_53868857_53871549_53871665_53873123_53873281_53877353_53877420_53877559
transcript_44325.known	chr18	-	474	2	FSM	ENSMUSG00000048799.9	ENSMUST00000235928.2	474	2	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATTTGTAAGAACTTTGC	NA	False	NA	NA	False	NA	NA	NA	53877612	53876998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_53877420_53877559
transcript_44326.known	chr18	+	2605	14	FSM	ENSMUSG00000001700.11	ENSMUST00000070166.6	2605	14	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	2.64910390118809	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGCTGTTTCCTGCATTT	2611	False	NA	NA	False	AATAAA	-26	NA	56565203	56636864	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_56565430_56602604_56602725_56607090_56607203_56609674_56609742_56611920_56612025_56615692_56615789_56618283_56618356_56618447_56618529_56621822_56621935_56622686_56622810_56623742_56623831_56624966_56625072_56630391_56630486_56635659
transcript_44329.known	chr18	-	4131	20	FSM	ENSMUSG00000053644.14	ENSMUST00000174518.8	4131	20	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_19	109.003545140448	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTCTTTTTTCTCTGGTT	2854	False	NA	NA	False	ATTAAA	-14	NA	56706023	56657793	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_56660080_56661348_56661425_56664561_56664636_56664782_56664881_56665052_56665170_56665559_56665667_56667261_56667347_56670275_56670371_56671772_56671815_56675296_56675395_56678036_56678115_56679975_56680021_56681518_56681652_56683367_56683492_56684231_56684313_56692293_56692360_56693847_56693902_56695104_56695277_56695554_56695748_56705916
transcript_44333.known	chr18	+	1386	5	FSM	ENSMUSG00000008301.12	ENSMUST00000130163.8	1386	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	188.72913791993	568	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTACCATTTCTACTGAG	NA	False	NA	15	True	AATAAA	-16	NA	56695514	56720261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_56695796_56708533_56709121_56713251_56713373_56717362_56717447_56719948
transcript_44338.known	chr18	-	1914	18	FSM	ENSMUSG00000053644.14	ENSMUST00000066208.13	1914	18	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_7	37.2351547251364	1868	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAGGTTTGGTGAGTTTTT	NA	False	NA	-5	True	ATTAAA	-30	NA	56695381	56659815	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_56660080_56661348_56661425_56664561_56664636_56664782_56664881_56665052_56665170_56665559_56665667_56667261_56667347_56670275_56670371_56671772_56671815_56675296_56675395_56678036_56678115_56679975_56680021_56681518_56681652_56683367_56683492_56684231_56684313_56692293_56692360_56693847_56693902_56695104
transcript_44339.known	chr18	-	1789	18	FSM	ENSMUSG00000053644.14	ENSMUST00000174704.8	1789	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	101.074812129723	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAAAGATAGGTTTGGTGA	NA	False	NA	-11	True	ATTAAA	-24	NA	56695290	56659821	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_56660080_56661348_56661425_56664561_56664636_56664782_56664881_56665052_56665170_56665559_56665667_56667261_56667347_56670275_56670371_56671772_56671815_56675324_56675395_56678036_56678115_56679975_56680021_56681518_56681652_56683367_56683492_56684231_56684313_56692293_56692360_56693847_56693902_56695104
transcript_44340.known	chr18	+	2843	11	FSM	ENSMUSG00000024590.9	ENSMUST00000025486.9	2843	11	0	0	0	0	multi-exon	FALSE	canonical	3	1085	junction_1	118.73230394463	1220	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACTGTTCTTTTTAACCC	NA	False	NA	20	True	AATAAA	-19	NA	56840884	56886496	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_56841547_56861472_56861630_56862358_56862485_56864041_56864213_56866283_56866410_56872892_56873114_56873758_56873985_56876282_56876388_56881048_56881169_56882770_56882882_56885678
transcript_44344.nic	chr18	-	1882	5	NIC	ENSMUSG00000032656.15	novel	860	4	NA	NA	-19	705	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	1.4142135623731	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGCAATACTCTTTCTT	NA	False	NA	NA	False	AATAAA	-28	NA	57058639	56908218	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr18_-_56909181_56916090_56916301_56940735_56940941_56944903_56945148_57058378
transcript_44349.known	chr18	-	726	6	FSM	ENSMUSG00000024592.16	ENSMUST00000139243.9	726	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	41.2281457259479	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTCGTGACCGTGGATGT	NA	False	NA	NA	False	NA	NA	NA	57108426	57090685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_57090994_57091594_57091652_57095472_57095591_57100164_57100262_57106455_57106557_57108381
transcript_44351.nic	chr18	-	2426	5	NIC	ENSMUSG00000024592.16	novel	726	6	NA	NA	3	5	combination_of_known_junctions	FALSE	canonical	3	31	junction_4	31.2329953734828	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGTTGGTAGTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	57108437	57088899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr18_-_57090994_57091594_57091652_57095472_57095591_57106455_57106557_57108381
transcript_44352.known	chr18	-	2400	5	FSM	ENSMUSG00000024592.16	ENSMUST00000025488.15	2400	5	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_4	15.0228991875736	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACTTCTGTTGGTAGTT	NA	False	NA	NA	False	NA	NA	NA	57108440	57088904	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_57090994_57091594_57091652_57095472_57095591_57106455_57106557_57108405
transcript_44355.nic	chr18	-	1157	5	NIC	ENSMUSG00000024592.16	novel	726	6	NA	NA	3	517	combination_of_known_junctions	FALSE	canonical	3	31	junction_4	31.2329953734828	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAACATGTGTTTTTGTAC	NA	False	NA	NA	False	TATAAA	-4	NA	57108437	57090168	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr18_-_57090994_57091594_57091652_57095472_57095591_57106455_57106557_57108381
transcript_44364.known	chr18	+	5030	9	FSM	ENSMUSG00000024594.10	ENSMUST00000025490.10	5030	9	0	0	0	0	multi-exon	FALSE	canonical	3	500	junction_4	197.841121547064	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGTGCAATGATTTAAATG	NA	False	NA	12	True	AATAAA	-22	NA	57487812	57526028	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_57487964_57495504_57495622_57496147_57496538_57498260_57498422_57504438_57504542_57507598_57507763_57514699_57514804_57517245_57517349_57522291
transcript_44380.nic	chr18	+	1031	5	NIC	ENSMUSG00000024594.10	novel	523	5	NA	NA	-78	374	combination_of_known_junctions	FALSE	canonical	3	294	junction_1	276.069284781918	5503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATCCTCTTTTTACTGTC	NA	False	NA	NA	False	AATAAA	-33	NA	57506885	57522681	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr18_+_57507156_57507598_57507763_57514699_57514804_57517245_57517349_57522291
transcript_4439.nic	chr1	-	1902	7	ISM	ENSMUSG00000006010.15	ENSMUST00000097547.10	2851	13	-335	20098	-17	2871	5prime_fragment	FALSE	canonical	3	106	junction_2	16.9476317585149	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTCTCGCTTACTCATTT	616	False	NA	NA	False	AATAAA	-30	NA	150268848	150257161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264409_150265986_150266108_150268440
transcript_44394.known	chr18	+	489	4	FSM	ENSMUSG00000024594.10	ENSMUST00000236755.2	489	4	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_1	295.732987676384	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACCCTGTGCATGGCATC	NA	False	NA	NA	False	NA	NA	NA	57506963	57517274	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_57507156_57507598_57507763_57514699_57514804_57517245
transcript_44395.known	chr18	+	523	5	FSM	ENSMUSG00000024594.10	ENSMUST00000238057.2	523	5	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	350.033123432626	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGGACTACAATCTGAGG	NA	False	NA	NA	False	NA	NA	NA	57506963	57522307	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_57507100_57507598_57507763_57514699_57514804_57517245_57517349_57522291
transcript_44396.known	chr18	+	3377	5	FSM	ENSMUSG00000024601.10	ENSMUST00000025503.10	3377	5	0	0	0	0	multi-exon	FALSE	canonical	3	445	junction_3	47.2175814713121	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGAAGGGTCCTGTGTATT	NA	False	NA	NA	False	AATAAA	-18	NA	58792537	58813440	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_58792870_58804279_58804400_58804519_58804724_58806321_58806439_58810836
transcript_44401.known	chr18	-	1990	2	FSM	ENSMUSG00000038059.8	ENSMUST00000042710.8	1990	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTTTTGTTTGTTTGTT	NA	False	NA	2	True	GATAAA	-15	NA	60635059	60607262	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_60608658_60634464
transcript_44403.known	chr18	+	3738	13	FSM	ENSMUSG00000024603.9	ENSMUST00000025505.7	3738	13	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_9	21.4333592534835	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGGTTTCACAAGTACT	NA	False	NA	34	True	AATAAA	-24	NA	60659272	60691838	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_60659438_60667664_60667736_60671335_60671515_60674643_60674688_60677110_60677219_60678819_60678894_60679292_60679406_60679838_60679949_60683257_60683332_60684959_60685015_60685916_60686025_60688178_60688277_60689299
transcript_44405.nnic	chr18	+	526	3	NNC	ENSMUSG00000024603.9	novel	1724	9	NA	NA	-18	-4904	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	98.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATTAGCAGTAAATGTTT	NA	False	NA	NA	False	NA	NA	NA	60659238	60671136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_60659438_60667664_60667736_60670880
transcript_44406.nnic	chr18	+	505	3	NNC	ENSMUSG00000024603.9	novel	1724	9	NA	NA	-18	-4904	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	96.5	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATTAGCAGTAAATGTTT	NA	False	NA	NA	False	NA	NA	NA	60659238	60671136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_60659438_60667664_60667736_60670901
transcript_44407.known	chr18	+	1530	2	FSM	ENSMUSG00000024603.9	ENSMUST00000223590.2	1530	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCTTACAAAGTTTTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	60659285	60661050	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_60659438_60659672
transcript_44413.known	chr18	+	2210	11	FSM	ENSMUSG00000024604.8	ENSMUST00000025506.7	2210	11	0	0	0	0	multi-exon	FALSE	canonical	3	519	junction_10	72.8288404411329	649	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTTTTAAGACTGGATTA	NA	False	NA	35	True	ATTAAA	-45	NA	60693807	60705882	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_60693952_60694322_60694377_60696837_60696868_60697434_60697568_60698689_60698791_60699424_60699598_60700442_60700644_60702428_60702594_60703852_60703942_60704071_60704204_60704894
transcript_44419.known	chr18	+	755	6	FSM	ENSMUSG00000024608.12	ENSMUST00000235966.2	755	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	10470.3724556484	234518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTGGTTCTGGTGTTGTG	NA	False	NA	67	True	AATAAA	-17	NA	60880220	60911617	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_60880294_60907581_60907759_60909472_60909624_60910001_60910164_60910884_60910962_60911502
transcript_44425.known	chr18	+	602	5	FSM	ENSMUSG00000024608.12	ENSMUST00000118551.8	602	5	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_1	11592.6756914657	29415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTATTTTGGTTCTGGTGT	NA	False	NA	63	True	AATAAA	-13	NA	60907752	60911613	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_60907854_60909472_60909624_60910001_60910164_60910884_60910962_60911502
transcript_44437.known	chr18	+	987	1	FSM	ENSMUSG00000024608.12	ENSMUST00000236441.2	987	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAAATAAATCAGCCG	NA	False	NA	NA	False	NA	NA	NA	60907736	60908723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_60907700_60908700
transcript_44438.known	chr18	+	597	5	FSM	ENSMUSG00000024608.12	ENSMUST00000025511.11	597	5	0	0	0	0	multi-exon	FALSE	canonical	3	20921	junction_1	2863.01274883644	532613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTCTGGTGTTGTGT	NA	False	NA	68	True	AATAAA	-18	NA	60907667	60911618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_60907759_60909472_60909624_60910001_60910164_60910884_60910962_60911502
transcript_44439.known	chr18	+	667	4	FSM	ENSMUSG00000024608.12	ENSMUST00000122279.2	667	4	0	0	0	0	multi-exon	FALSE	canonical	3	24831	junction_3	1445.1337500576	29994	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTGGTTCTGGTGTTGTG	NA	False	NA	67	True	AATAAA	-17	NA	60909310	60911617	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_60909624_60910001_60910164_60910884_60910962_60911502
transcript_44440.known	chr18	+	444	5	FSM	ENSMUSG00000024608.12	ENSMUST00000137400.8	444	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11701.1630698619	824	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACTCGAAGAAAAGGGGGT	NA	False	NA	-21	True	NA	NA	NA	60908787	60911529	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_60908815_60909472_60909624_60910001_60910164_60910884_60910962_60911502
transcript_44442.known	chr18	+	1410	9	FSM	ENSMUSG00000024610.16	ENSMUST00000097563.9	1410	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	11.7020297384685	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACACTCTTGCTTCTGCC	NA	False	NA	1	True	AATAAA	-11	NA	60936919	60945718	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_60937083_60940979_60941150_60941303_60941384_60942099_60942163_60943053_60943147_60943399_60943491_60944365_60944558_60944930_60944994_60945223
transcript_44443.known	chr18	+	1224	8	FSM	ENSMUSG00000024610.16	ENSMUST00000050487.16	1224	8	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	5.45108115095397	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTGCTTCTGCCTCTTCA	NA	False	NA	7	True	AATAAA	-17	NA	60936919	60945724	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_60937083_60940979_60941150_60941303_60941384_60942099_60942163_60943053_60943147_60943399_60943491_60944930_60944994_60945223
transcript_44446.known	chr18	-	4595	26	FSM	ENSMUSG00000024613.17	ENSMUST00000175934.8	4595	26	0	0	0	0	multi-exon	FALSE	canonical	2	549	junction_9	234.649375878139	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGCCTTCCCCATGCAT	NA	False	NA	-18	True	AATAAA	-17	NA	60982001	60946826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_60947261_60947594_60947641_60948029_60948125_60949072_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60960411_60960520_60961436_60961632_60961727_60961908_60962085_60962188_60964584_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
transcript_44448.known	chr18	-	4529	25	FSM	ENSMUSG00000024613.17	ENSMUST00000176630.8	4529	25	0	0	0	0	multi-exon	FALSE	canonical	2	677	junction_9	198.19802369656	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGCCTTCCCCATGCAT	NA	False	NA	-18	True	AATAAA	-17	NA	60982043	60946826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_60947261_60947594_60947641_60948029_60948125_60949072_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60961436_60961632_60961727_60961908_60962085_60962188_60964584_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
transcript_4445.known	chr1	-	826	3	FSM	ENSMUSG00000006010.15	ENSMUST00000140112.2	826	3	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_2	15.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAGCAAAACAAAAAAAA	966	False	NA	NA	False	NA	NA	NA	150268498	150263761	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_150264409_150265986_150266108_150268440
transcript_44455.nnic	chr18	-	828	5	NNC	ENSMUSG00000024613.17	novel	4529	25	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	625.470772698453	177	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGCCTTCCCCATGCAT	NA	False	NA	-18	True	AATAAA	-17	NA	60982032	60946826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_-_60947261_60947594_60947641_60948029_60948125_60949072_60949116_60981822
transcript_44456.nic	chr18	-	509	4	ISM	ENSMUSG00000024613.17	ENSMUST00000177172.8	3229	20	-78	21543	-25	-890	5prime_fragment	FALSE	canonical	3	1086	junction_1	85.7684220574345	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGAGTTTATTTCCGAGTT	NA	False	NA	NA	False	AGTAAA	-7	NA	60982068	60972644	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_-_60972706_60976297_60976444_60978882_60978939_60981822
transcript_4446.known	chr1	+	572	2	FSM	ENSMUSG00000006005.19	ENSMUST00000131701.2	572	2	0	0	0	0	multi-exon	FALSE	canonical	3	582	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCCAAAATTGTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	150269134	150271246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_150269410_150270949
transcript_44460.nnic	chr18	-	427	3	Antisense	novelGene_ENSMUSG00000098247.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	1	1	junction_1	1	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGCCTGGTGTTTTA	NA	False	NA	NA	False	AATAAA	-16	NA	61087371	61084592	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr18_-_61084735_61086934_61087059_61087210
transcript_44463.known	chr18	-	3366	14	FSM	ENSMUSG00000052026.9	ENSMUST00000025520.10	3366	14	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_10	5.15671561910596	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTACCTGACTCTGCTAC	NA	False	NA	-5	True	AATAAA	-19	NA	61147294	61128451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_61129904_61133493_61133662_61134363_61134465_61134641_61134742_61135194_61135327_61135397_61135511_61136312_61136438_61136558_61136663_61137460_61137596_61138783_61138923_61140446_61140682_61140787_61140920_61142493_61142678_61147048
transcript_44464.known	chr18	-	1750	3	FSM	ENSMUSG00000024619.9	ENSMUST00000025521.9	1750	3	0	0	0	0	multi-exon	FALSE	canonical	3	995	junction_1	57.5	1158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGCTGCCATCCTTTCTCGT	7754	False	NA	-5	True	ATTAAA	-22	NA	61169271	61151933	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_61153014_61153445_61153592_61168747
transcript_44467.known	chr18	-	7814	4	FSM	ENSMUSG00000034320.15	ENSMUST00000146409.8	7814	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	1.4142135623731	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTTAGTGCTGGAAGTT	8715	False	NA	-2	True	AATAAA	-29	NA	61344684	61325990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_61332731_61334752_61335476_61337381_61337518_61344469
transcript_4448.known	chr1	-	1809	14	FSM	ENSMUSG00000006010.15	ENSMUST00000094477.4	1809	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	45.878537865612	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGTTTA	970	False	NA	NA	False	NA	NA	NA	150268494	150238284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_150238640_150239241_150239350_150247779_150247951_150250529_150250637_150251246_150251376_150256062_150256129_150257249_150257346_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264409_150265986_150266108_150268354
transcript_44494.nnic	chr18	-	796	2	Genic_Genomic	ENSMUSG00000091957.4	novel	965	1	NA	NA	-15	-3	multi-exon	FALSE	canonical	0	0	junction_1	0	3043	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATCTTGGACCTGCAGAGA	7408	False	NA	NA	False	NA	NA	NA	61393058	61392081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr18_-_61392484_61392664
transcript_44495.nnic	chr18	-	814	2	Genic_Genomic	ENSMUSG00000091957.4	novel	965	1	NA	NA	-15	-15	multi-exon	FALSE	canonical	0	0	junction_1	0	3117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAATCTTG	7408	False	NA	NA	False	AATAAA	-34	NA	61393058	61392093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr18_-_61392514_61392664
transcript_44496.known	chr18	-	965	1	FSM	ENSMUSG00000091957.4	ENSMUST00000170335.4	965	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	213896	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGGACCTGCAGAGATGG	7423	False	NA	NA	False	NA	NA	NA	61393043	61392078	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_61392100_61393000
transcript_44497.known	chr18	-	879	1	FSM	ENSMUSG00000091957.4	ENSMUST00000076842.7	879	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7285	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGTTTTTATATGAGAA	7434	False	NA	NA	False	NA	NA	NA	61393032	61392153	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_61392200_61393000
transcript_44498.known	chr18	-	3656	12	FSM	ENSMUSG00000033871.15	ENSMUST00000075299.13	3656	12	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_9	7.10022697809696	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGGCTCTGATTACTGT	3293	False	NA	NA	False	AAAAAG	-37	NA	61533502	61431206	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_61431855_61432656_61432812_61435689_61435812_61437778_61437855_61440277_61441086_61442103_61442166_61442716_61442754_61443477_61444580_61445224_61445342_61448807_61449021_61456205_61456380_61533360
transcript_44501.known	chr18	+	1222	11	FSM	ENSMUSG00000024576.15	ENSMUST00000167187.8	1222	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	819.69914602859	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTGTGGACAACCATTTAC	843	False	NA	NA	False	NA	NA	NA	61688759	61720602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61704944_61705029_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61720496
transcript_44503.known	chr18	+	2259	11	FSM	ENSMUSG00000024576.15	ENSMUST00000170862.8	2259	11	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_5	708.334701959462	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTGTTGCTTAGATAA	493	False	NA	-31	True	NA	NA	NA	61688409	61721253	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61704944_61705029_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713559_61720496
transcript_44507.known	chr18	+	1484	10	FSM	ENSMUSG00000024576.15	ENSMUST00000115246.9	1484	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	613.012254927549	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTTGTATTGTAACTTAT	472	False	NA	25	True	ATTAAA	-16	NA	61688388	61715187	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61715106
transcript_44508.known	chr18	+	4083	10	FSM	ENSMUSG00000024576.15	ENSMUST00000165123.8	4083	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_9	613.012254927549	858	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGAGAGGCTGGTTGTCT	428	False	NA	13	True	AATAAA	-16	NA	61688344	61723132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61720496
transcript_4451.known	chr1	+	3315	15	FSM	ENSMUSG00000023150.15	ENSMUST00000186745.2	3315	15	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_7	304.179802157895	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAATTTAAGAACCCCAAAC	NA	False	NA	NA	False	NA	NA	NA	151220328	151239116	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230511_151230917_151231988_151235372_151235503_151235703_151235929_151236468_151236591_151236682_151236810_151236893_151237026_151237212_151237387_151238862
transcript_44510.known	chr18	+	2323	10	FSM	ENSMUSG00000024576.15	ENSMUST00000165721.8	2323	10	0	0	0	0	multi-exon	FALSE	canonical	3	816	junction_9	364.192494210831	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAAGTGAAATTTTTTTA	467	False	NA	27	True	ATTAAA	-20	NA	61688383	61721375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713559_61720496
transcript_44512.known	chr18	+	3204	9	FSM	ENSMUSG00000024576.15	ENSMUST00000163205.8	3204	9	0	0	0	0	multi-exon	FALSE	canonical	3	1742	junction_4	121.033053336682	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGACTGCTTTTAAAGGTA	482	False	NA	NA	False	AATAAA	-13	NA	61688398	61715333	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409
transcript_44517.nic	chr18	+	1456	6	ISM	ENSMUSG00000024576.15	ENSMUST00000115246.9	1484	10	-347	5530	-303	-5530	5prime_fragment	FALSE	canonical	3	1742	junction_4	112.994867140061	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGTAGCCTCTAATTACT	125	False	NA	14	True	AATAGA	-29	NA	61688041	61709657	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577
transcript_44519.nnic	chr18	+	1215	3	NNC	ENSMUSG00000024576.15	novel	3204	9	NA	NA	-303	-278	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_2	887.5	87	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACCACTGGTCATTTGTA	125	False	NA	NA	False	AATAAA	-17	NA	61688041	61691031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_61688945_61689573_61689681_61690826
transcript_4452.known	chr1	+	3511	15	FSM	ENSMUSG00000023150.15	ENSMUST00000023918.13	3511	15	0	0	0	0	multi-exon	TRUE	canonical	3	1145	junction_2	98.7764172879585	1281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCACTGTGGGATTTAATGT	NA	False	NA	17	True	ATTAAA	-21	NA	151220227	151240173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230511_151231879_151231988_151235372_151235503_151235703_151235929_151236468_151236591_151236682_151236810_151236893_151237026_151237212_151237387_151238862
transcript_44520.known	chr18	+	2275	2	FSM	ENSMUSG00000024576.15	ENSMUST00000165381.2	2275	2	0	0	0	0	multi-exon	FALSE	canonical	3	1813	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAACCAGTC	489	False	NA	NA	False	NA	NA	NA	61688405	61691309	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_61688945_61689573
transcript_44521.nnic	chr18	+	814	4	NNC	ENSMUSG00000098098.8	novel	588	3	NA	NA	-59	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	31.6262900483478	69	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAATGACTTTCTTAATAG	NA	False	NA	17	True	AATAAA	-17	NA	61772553	61780543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_61772840_61777285_61777342_61778233_61778437_61780274
transcript_44532.known	chr18	+	483	3	FSM	ENSMUSG00000098098.8	ENSMUST00000183083.8	483	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	32.5	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTGTGCGCAGGGATCA	NA	False	NA	NA	False	NA	NA	NA	61772612	61780363	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_61772804_61778233_61778437_61780274
transcript_44534.known	chr18	+	588	3	FSM	ENSMUSG00000098098.8	ENSMUST00000183087.2	588	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	11.5	531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAATGACTTTCTTAATAG	NA	False	NA	17	True	AATAAA	-17	NA	61772723	61780543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_61772840_61778233_61778437_61780274
transcript_44535.known	chr18	+	693	3	FSM	ENSMUSG00000024578.4	ENSMUST00000025471.4	693	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	1.5	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCATTGATTGGGCTTGTTC	NA	False	NA	NA	False	AGTAAA	-21	NA	61821005	61825609	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_61821076_61823188_61823479_61825276
transcript_44536.nnic	chr18	+	727	3	NNC	ENSMUSG00000024578.4	novel	846	3	NA	NA	337	0	at_least_one_novel_splicesite	TRUE	canonical	2	4	junction_1	1	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCATTGATTGGGCTTGTTC	NA	False	NA	NA	False	AGTAAA	-21	NA	61821342	61825609	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_61821447_61823188_61823479_61825276
transcript_44539.known	chr18	+	748	3	FSM	ENSMUSG00000024578.4	ENSMUST00000235713.2	748	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCATTGATTGGGCTTGT	NA	False	NA	NA	False	AGTAAA	-19	NA	61820985	61825607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_61821113_61823188_61823479_61825276
transcript_44540.known	chr18	-	2017	6	FSM	ENSMUSG00000024579.8	ENSMUST00000025472.7	2017	6	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_4	12.1061967603372	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTGACTTATTCTTTTT	NA	False	NA	-1	True	TATAAA	-16	NA	61840706	61829907	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_61831048_61831434_61831576_61832363_61832576_61835266_61835442_61836582_61836790_61840564
transcript_44541.known	chr18	-	977	2	FSM	ENSMUSG00000024579.8	ENSMUST00000154763.2	977	2	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATGGAAGCACACAGTAGA	NA	False	NA	NA	False	NA	NA	NA	61840706	61835954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_61836790_61840564
transcript_44542.known	chr18	-	4038	4	FSM	ENSMUSG00000024580.9	ENSMUST00000062991.9	4038	4	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_1	10.9645894689324	783	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTCGAGTTCTCTCATGA	NA	False	NA	-2	True	ATTAAA	-14	NA	61859394	61845494	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_61849199_61851824_61851907_61852772_61852927_61859296
transcript_44543.known	chr18	-	3960	4	FSM	ENSMUSG00000024580.9	ENSMUST00000238010.2	3960	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	123.570043115456	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTTTACAGTTTATAAT	NA	False	NA	NA	False	AATAAA	-23	NA	61859396	61848081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_61851706_61851824_61851907_61852772_61852927_61859296
transcript_44546.nnic	chr18	-	1717	5	NNC	ENSMUSG00000033032.16	novel	2842	16	NA	NA	49235	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	5.2618912949623	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCAGAGGGTAGCTGGC	NA	False	NA	1	True	AATAAA	-21	NA	61870447	61863331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_-_61864382_61866774_61866904_61868638_61868818_61869853_61870019_61870253
transcript_44548.nnic	chr18	+	1035	3	NNC	ENSMUSG00000098702.2	novel	423	2	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1.5	70	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCACTACACCCGATCTCT	NA	False	NA	3	True	AATAAA	-17	NA	61859469	61868980	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_61860074_61867419_61867539_61868668
transcript_44549.nic	chr18	-	1587	3	ISM	ENSMUSG00000033032.16	ENSMUST00000154876.8	2842	16	50636	0	50636	0	3prime_fragment	FALSE	canonical	3	21	junction_1	5	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCAGAGGGTAGCTGGC	NA	False	NA	1	True	AATAAA	-21	NA	61869046	61863331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_-_61864382_61866774_61866904_61868638
transcript_44551.known	chr18	+	890	2	FSM	ENSMUSG00000098702.2	ENSMUST00000184678.2	890	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCGATCTCTCAGTTTGC	NA	False	NA	11	True	AATAAA	-25	NA	61859503	61868988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_61860074_61868668
transcript_44552.known	chr18	+	1865	1	FSM	ENSMUSG00000098702.2	ENSMUST00000184181.2	1865	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACTTGGTCAGACTTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	61859460	61861325	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_61859500_61861300
transcript_44554.nic	chr18	+	792	4	ISM	ENSMUSG00000045629.9	ENSMUST00000051720.6	4536	17	-186	44488	-186	-44488	5prime_fragment	FALSE	canonical	3	19	junction_3	3.09120616516523	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTCATCTGAAGACATTT	NA	False	NA	NA	False	AATAAA	-19	NA	62085959	62104298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_+_62086239_62094014_62094114_62101059_62101188_62104012
transcript_44555.known	chr18	-	2144	1	FSM	ENSMUSG00000045730.5	ENSMUST00000053640.5	2144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCATTGCACCCGTTTCTT	NA	False	NA	NA	False	AATAAA	-15	NA	62313030	62310886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_62310900_62313000
transcript_44556.known	chr18	-	4254	22	FSM	ENSMUSG00000042211.8	ENSMUST00000048688.8	4254	22	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_21	37.2590368590547	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGTTTCCAGAGCATTTC	NA	False	NA	-48	True	AATAAA	-16	NA	62681766	62637225	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_62637952_62638545_62638660_62639008_62639113_62639674_62639821_62640904_62641072_62643780_62643884_62644084_62644186_62647865_62648616_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666579_62666746_62666971_62667136_62669186_62669321_62673951_62674118_62681682
transcript_44564.known	chr18	-	809	2	FSM	ENSMUSG00000041789.8	ENSMUST00000048109.7	809	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTTGCACTAGAAGCTGT	NA	False	NA	NA	False	AATAAA	-18	NA	62889418	62887860	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_62888246_62888994
transcript_44565.known	chr18	-	2101	3	FSM	ENSMUSG00000041789.8	ENSMUST00000067450.3	2101	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	4	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTTACTTGGGTAACCCT	NA	False	NA	NA	False	NA	NA	NA	62889386	62884744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_62886405_62888196_62888246_62888994
transcript_44566.known	chr18	+	1129	13	FSM	ENSMUSG00000024581.14	ENSMUST00000150267.2	1129	13	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_10	86.248671487353	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACGAGTACTCGGGAGGCC	NA	False	NA	NA	False	NA	NA	NA	63110971	63130003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_63111096_63113536_63113605_63115689_63115775_63116444_63116463_63117110_63117142_63119249_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63125411_63125562_63127382_63127463_63128033_63128164_63129887
transcript_4457.known	chr1	+	3337	14	FSM	ENSMUSG00000023150.15	ENSMUST00000097543.8	3337	14	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_6	362.778266997786	1195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCCTTGCACTGTGGGAT	NA	False	NA	10	True	ATTAAA	-14	NA	151220268	151240166	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151231879_151231988_151235372_151235503_151235703_151235929_151236468_151236591_151236682_151236810_151236893_151237026_151237212_151237387_151238862
transcript_44570.known	chr18	+	3567	12	FSM	ENSMUSG00000024581.14	ENSMUST00000025474.14	3567	12	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_8	19.1691039293584	388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGTCAGTTTTATTTGCT	NA	False	NA	6	True	AATAAA	-18	NA	63110901	63132521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_63111096_63113536_63113605_63115689_63115775_63116444_63116463_63117110_63117142_63119249_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63127382_63127463_63128033_63128164_63129887
transcript_44576.known	chr18	+	1191	11	FSM	ENSMUSG00000024581.14	ENSMUST00000236925.2	1191	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	72.5303384798389	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATCATAAGTAAAGCAGGAAA	NA	False	NA	NA	False	GATAAA	-5	NA	63110979	63130291	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_63111096_63115689_63115775_63116444_63116463_63117110_63117142_63119249_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63127382_63127463_63128033_63128164_63129887
transcript_44577.known	chr18	+	1359	10	FSM	ENSMUSG00000024581.14	ENSMUST00000237157.2	1359	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	76.7566299866896	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTCTGGTTCTTTCGATG	NA	False	NA	14	True	NA	NA	NA	63110917	63130432	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_63111096_63113536_63113605_63117110_63117142_63119249_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63127382_63127463_63128033_63128164_63129887
transcript_44580.known	chr18	+	826	8	FSM	ENSMUSG00000024581.14	ENSMUST00000235372.2	826	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	83.448627726211	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTCACTGAAATCCTGAC	NA	False	NA	NA	False	NA	NA	NA	63111036	63130117	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_63111096_63119249_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63127382_63127463_63128033_63128164_63129887
transcript_44588.known	chr18	+	624	3	FSM	ENSMUSG00000024581.14	ENSMUST00000137849.3	624	3	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	10	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAATTAGTCTTGCTTAGG	NA	False	NA	NA	False	CATAAA	-21	NA	63110946	63116096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_63111096_63113536_63113605_63115689
transcript_44589.known	chr18	+	2067	12	FSM	ENSMUSG00000040560.11	ENSMUST00000235648.2	2067	12	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_9	9.24505675375578	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTCTGTATGCAGACATT	NA	False	NA	NA	False	AATAAA	-22	NA	63841765	63873569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_63841991_63853288_63853461_63853827_63853935_63857191_63857271_63860689_63860865_63861509_63861587_63863160_63863281_63868649_63868796_63869474_63869578_63871813_63871956_63872175_63872425_63873097
transcript_44597.known	chr18	-	4343	8	FSM	ENSMUSG00000024583.4	ENSMUST00000237004.2	4343	8	0	0	0	0	multi-exon	FALSE	canonical	3	853	junction_1	53.8088074120031	2944	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTATTTGTTTGTTTATT	NA	False	NA	NA	False	AATAAA	-16	NA	63825508	63794164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_63797404_63804652_63804758_63807119_63807293_63808514_63808585_63809949_63810073_63812423_63812598_63815281_63815379_63825146
transcript_44598.known	chr18	+	443	1	FSM	ENSMUSG00000118264.2	ENSMUST00000235992.2	443	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	538	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGAGGCCATTAAAGACTGG	NA	False	NA	NA	False	NA	NA	NA	64421428	64421871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_64421400_64421900
transcript_44599.known	chr18	+	16234	2	FSM	ENSMUSG00000045991.20	ENSMUST00000175965.10	16234	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTGGCTCAGTTTGCTTTC	NA	False	NA	NA	False	AATAAA	-18	NA	64473090	64534058	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_64474682_64519415
transcript_4460.known	chr1	+	2783	8	FSM	ENSMUSG00000023150.15	ENSMUST00000111887.10	2783	8	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_7	396.626282743927	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACGTCTGTAGCCTTTTA	NA	False	NA	11	True	ATTAAA	-28	NA	151220259	151232550	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230511_151230917
transcript_44600.known	chr18	-	1005	1	FSM	ENSMUSG00000060096.6	ENSMUST00000072796.6	1005	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAGGAAAAATGAAGAAGAA	NA	False	NA	NA	False	AAGAAA	-22	NA	64582760	64581755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_64581800_64582800
transcript_44602.known	chr18	-	6571	11	FSM	ENSMUSG00000024588.11	ENSMUST00000236586.3	6571	11	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_4	29.1315979650963	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTTGCTGTTGCTTATA	NA	False	NA	NA	False	NA	NA	NA	64622171	64585984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_64591289_64591725_64591786_64594591_64594757_64595177_64595286_64597156_64597256_64600798_64600906_64603752_64603888_64608127_64608277_64611721_64611842_64616404_64616529_64621971
transcript_44605.known	chr18	-	2059	10	FSM	ENSMUSG00000024588.11	ENSMUST00000025484.9	2059	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_9	95.9785212597583	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTGCTGTGTACGCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	64622134	64590335	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_64591289_64591725_64591786_64594591_64594757_64595177_64595286_64597156_64597256_64600798_64600906_64603752_64603888_64608127_64608277_64611721_64611842_64621971
transcript_44636.known	chr18	-	848	1	FSM	ENSMUSG00000024587.11	ENSMUST00000237027.2	848	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAATCAAATAGGAA	NA	False	NA	NA	False	NA	NA	NA	64649570	64648722	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_64648700_64649600
transcript_44637.known	chr18	-	2745	15	FSM	ENSMUSG00000024587.11	ENSMUST00000237400.2	2745	15	0	0	0	0	multi-exon	FALSE	canonical	3	3478	junction_14	514.735973533014	6267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCTGACTTATTTTCTC	NA	False	NA	NA	False	AATAAA	-31	NA	64649723	64632717	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
transcript_44638.known	chr18	-	2103	15	FSM	ENSMUSG00000024587.11	ENSMUST00000237369.2	2103	15	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_12	1341.18505510642	3433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGTCTGACATCCAGTA	NA	False	NA	-10	True	AATAAA	-26	NA	64649626	64633283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644970_64645054_64645121_64648396_64648480_64649486
transcript_44639.known	chr18	-	2687	15	FSM	ENSMUSG00000024587.11	ENSMUST00000025483.11	2687	15	0	0	0	0	multi-exon	FALSE	canonical	3	2259	junction_14	785.439045946889	4246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCAAAACACTTTGCTGA	NA	False	NA	NA	False	AATAAA	-20	NA	64649679	64632728	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
transcript_44640.known	chr18	-	2482	14	FSM	ENSMUSG00000024587.11	ENSMUST00000236873.2	2482	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	1471.99684444606	893	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	AATAAA	-23	NA	64649550	64632725	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
transcript_44641.known	chr18	-	2268	14	FSM	ENSMUSG00000024587.11	ENSMUST00000237585.2	2268	14	0	0	0	0	multi-exon	FALSE	canonical	3	3478	junction_13	534.16599817797	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATTATGGTCTGACATC	NA	False	NA	-15	True	AATAAA	-21	NA	64649508	64633288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_64633721_64634373_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
transcript_44642.known	chr18	-	1784	15	FSM	ENSMUSG00000024587.11	ENSMUST00000236186.2	1784	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1471.48717116323	450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCATCTAATACTGTTCTC	NA	False	NA	NA	False	AATAAA	-15	NA	64649586	64633973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_64634156_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
transcript_44646.known	chr18	+	821	7	FSM	ENSMUSG00000024516.14	ENSMUST00000153193.3	821	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	174.951818764164	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGCTTCCTTTTGTGGCC	NA	False	NA	NA	False	AATAAA	-16	NA	65933642	65950731	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_65933783_65934521_65934564_65942515_65942626_65945735_65945886_65947908_65948029_65949891_65949950_65950530
transcript_44647.known	chr18	+	737	6	FSM	ENSMUSG00000024516.14	ENSMUST00000126432.9	737	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	146.338511677548	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTTTTGTGGCCTCTGA	NA	False	NA	NA	False	AATAAA	-21	NA	65933616	65950736	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_65933783_65942515_65942626_65945735_65945813_65947908_65948029_65949891_65949950_65950530
transcript_4465.known	chr1	-	3688	20	FSM	ENSMUSG00000052748.15	ENSMUST00000064771.12	3688	20	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_7	20.5845328266092	195	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGCTTTTCCGTTTACT	NA	False	NA	0	True	AATAAA	-18	NA	151304206	151243449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_151244340_151246329_151246395_151248058_151248126_151255133_151255266_151260067_151260256_151264370_151264520_151267186_151267326_151270359_151270524_151272956_151273103_151276830_151276925_151278705_151278895_151279545_151279648_151281166_151281297_151283326_151283387_151286521_151287210_151288541_151288598_151295850_151295935_151297784_151297872_151299257_151299357_151304047
transcript_44650.known	chr18	+	860	6	FSM	ENSMUSG00000024516.14	ENSMUST00000025394.14	860	6	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_3	14.5244621242922	1735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGAGTCTGCCCAGTCTC	NA	False	NA	NA	False	AATAAA	-40	NA	65933585	65950755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_65933783_65942515_65942626_65945735_65945886_65947908_65948029_65949891_65949950_65950530
transcript_44652.known	chr18	+	2829	5	FSM	ENSMUSG00000024516.14	ENSMUST00000139538.9	2829	5	0	0	0	0	multi-exon	FALSE	canonical	3	355	junction_1	12.6565200588471	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTTTTGTGGCCTCTGA	NA	False	NA	NA	False	AATAAA	-21	NA	65933620	65950736	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_65933783_65942515_65942626_65945735_65948029_65949891_65949950_65950530
transcript_44653.known	chr18	-	1672	3	FSM	ENSMUSG00000024518.5	ENSMUST00000025396.5	1672	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTGCTCATCGACTACAGC	NA	False	NA	NA	False	ATTAAA	-23	NA	66072160	66067706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_66068561_66071090_66071345_66071596
transcript_44654.known	chr18	-	4676	13	FSM	ENSMUSG00000041891.17	ENSMUST00000236866.2	4676	13	0	0	0	0	multi-exon	FALSE	canonical	3	864	junction_5	66.5663307452716	1252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGGTTTTTTCCTCCAT	NA	False	NA	-22	True	AATAAA	-15	NA	66135710	66113827	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_66116959_66117223_66117346_66120825_66120977_66124402_66124474_66124564_66124759_66126145_66126279_66126649_66126709_66127855_66127980_66129752_66129853_66130670_66130733_66131445_66131554_66131636_66131792_66135444
transcript_44655.known	chr18	-	1741	14	FSM	ENSMUSG00000041891.17	ENSMUST00000120461.9	1741	14	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	258.280362323832	529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTTGTCTGACAACCTG	NA	False	NA	NA	False	NA	NA	NA	66135692	66115634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_66115782_66116891_66116959_66117223_66117346_66120825_66120977_66124402_66124474_66124564_66124759_66126145_66126279_66126649_66126709_66127855_66127980_66129752_66129853_66130670_66130733_66131445_66131554_66131636_66131792_66135444
transcript_44656.known	chr18	-	6572	11	FSM	ENSMUSG00000046318.17	ENSMUST00000130300.3	6572	11	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_9	3.55527776692624	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGGCTCTCCTGTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	66425738	66189925	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_66194592_66198939_66198976_66199653_66199690_66199799_66199940_66204271_66204393_66209378_66209483_66216165_66216319_66217808_66217944_66227068_66227122_66424202_66424284_66424691
transcript_44657.known	chr18	+	1012	3	FSM	ENSMUSG00000024521.9	ENSMUST00000236933.2	1012	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	46	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCATGAGAAGTTTCTAAAA	NA	False	NA	NA	False	ATTAAA	-14	NA	66591663	66597151	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_66591709_66593913_66594070_66596340
transcript_44658.known	chr18	+	2727	3	FSM	ENSMUSG00000024521.9	ENSMUST00000025399.9	2727	3	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_2	7	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTCTTTCTGTGTGTTTT	NA	False	NA	22	True	AATAAA	-34	NA	66591603	66598631	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_66591884_66593913_66594070_66596340
transcript_44661.known	chr18	-	2670	5	FSM	ENSMUSG00000118216.2	ENSMUST00000237328.2	2670	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	3.34477204006491	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTACTTTTGGTCAGCGTGT	NA	False	NA	NA	False	NA	NA	NA	67083032	67056541	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_67058682_67059267_67059444_67066989_67067096_67069655_67069784_67082912
transcript_44662.known	chr18	-	671	3	FSM	ENSMUSG00000118216.2	ENSMUST00000235553.2	671	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	4	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAAGGCTCTGGGGGATTT	NA	False	NA	NA	False	NA	NA	NA	67083046	67059012	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_67059444_67066989_67067096_67082912
transcript_44665.known	chr18	+	3470	12	FSM	ENSMUSG00000024524.18	ENSMUST00000076605.9	3470	12	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	2.38452309974618	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATATGTAAGACCTGCAAA	NA	False	NA	-1	True	AATAAA	-13	NA	67266092	67357306	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_67267042_67267283_67267357_67268382_67268438_67268589_67268710_67324440_67324539_67344118_67344174_67345295_67345370_67346142_67346202_67346558_67346680_67350140_67350272_67351574_67351643_67355639
transcript_44667.known	chr18	+	2524	1	FSM	ENSMUSG00000109901.3	ENSMUST00000210564.3	2524	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	226	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTTATTTCCTCGCTTTT	NA	False	NA	85	True	CATAAA	-20	NA	67338436	67340960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_67338400_67341000
transcript_44668.nic	chr18	-	2314	11	NIC	ENSMUSG00000062526.5	novel	2494	11	NA	NA	67	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_4	13.4104436913922	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTTTGGATCTTTTCTAA	NA	False	NA	1	True	GATAAA	-23	NA	67378445	67358113	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr18_-_67358956_67359853_67359995_67360667_67360791_67360874_67360950_67361083_67361193_67362000_67362076_67362745_67362850_67366671_67366781_67370420_67370804_67377034_67377119_67378176
transcript_44669.known	chr18	-	2494	11	FSM	ENSMUSG00000062526.5	ENSMUST00000073054.5	2494	11	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	12.1016527796826	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTTTGGATCTTTTCTAA	NA	False	NA	1	True	GATAAA	-23	NA	67378901	67358113	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_67358956_67359853_67359995_67360667_67360791_67360874_67360950_67361083_67361193_67362000_67362076_67362745_67362850_67366671_67366781_67370420_67370804_67377034_67377119_67378452
transcript_44689.known	chr18	+	5054	8	FSM	ENSMUSG00000024525.8	ENSMUST00000025403.8	5054	8	0	0	0	0	multi-exon	FALSE	canonical	3	959	junction_6	106.526800307122	3455	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTGGTCGCCACATCTT	NA	False	NA	NA	False	NA	NA	NA	67422255	67455542	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_67422577_67435245_67435380_67439740_67439846_67442121_67442168_67443716_67443826_67448689_67448799_67449951_67450104_67451464
transcript_447.known	SIRV5	+	546	2	FSM	SIRV5A	SIRV511	546	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTACGGCCAGTTTAGC	NA	False	NA	NA	False	AATGAA	-17	NA	1008	2398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV5_+_1144_1987
transcript_4470.known	chr1	+	2749	15	FSM	ENSMUSG00000053286.12	ENSMUST00000065625.12	2749	15	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_10	24.5323609686038	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGACTGGGCTCGCGT	NA	False	NA	15	True	AATAAA	-16	NA	151304292	151333912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_151304854_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997_151319078_151324004_151324249_151325650_151325864_151327798_151327990_151328827_151328907_151329635_151329803_151330728_151330792_151333213_151333341_151333432
transcript_44706.known	chr18	+	1115	5	FSM	ENSMUSG00000024526.10	ENSMUST00000025404.10	1115	5	0	0	0	0	multi-exon	FALSE	canonical	1	47	junction_1	40.4042077016738	1159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTGCAACTGGTTTGT	6208	False	NA	28	True	AATAAA	-26	NA	67476673	67500855	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_67476911_67491779_67491925_67493165_67493313_67499444_67499627_67500451
transcript_44709.known	chr18	+	1758	4	FSM	ENSMUSG00000001473.8	ENSMUST00000001513.8	1758	4	0	0	0	0	multi-exon	FALSE	canonical	3	606	junction_3	34.2928563989645	687	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCGGTCTCTTGAACTTC	NA	False	NA	12	True	AATAAA	-14	NA	67523786	67535819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_67523885_67524394_67524504_67526015_67526127_67534379
transcript_44712.known	chr18	+	1404	7	FSM	ENSMUSG00000024530.9	ENSMUST00000025411.9	1404	7	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_6	3.34995854037363	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGGCAACTCTCCTGCC	NA	False	NA	NA	False	NA	NA	NA	67597935	67612905	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_67598027_67605926_67606096_67606810_67606901_67609864_67609936_67610033_67610137_67611019_67611132_67612137
transcript_44715.known	chr18	+	799	3	FSM	ENSMUSG00000024530.9	ENSMUST00000235492.2	799	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAGAAAAAGAAAGAAAGG	NA	False	NA	NA	False	NA	NA	NA	67597953	67607367	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_67598027_67605926_67606096_67606810
transcript_44716.known	chr18	-	3576	12	FSM	ENSMUSG00000073542.4	ENSMUST00000097542.4	3576	12	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_4	9.14800253679584	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGTTTTGGATGTCTTGA	830	False	NA	-4	True	AATAAA	-18	NA	67774406	67750869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_67752443_67752605_67752824_67756206_67756541_67757999_67758167_67759589_67759779_67762888_67763018_67766520_67766619_67767824_67768011_67770208_67770434_67771335_67771412_67773077_67773234_67774181
transcript_44717.known	chr18	+	1300	7	FSM	ENSMUSG00000024537.6	ENSMUST00000235799.2	1300	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	156.039168871864	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCGGTTTTATCTGGAAAG	NA	False	NA	26	True	AATAAA	-32	NA	67774670	67787232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_67775049_67777378_67777551_67779062_67779122_67781197_67781317_67781842_67782017_67786222_67786344_67786955
transcript_44723.known	chr18	+	1059	7	FSM	ENSMUSG00000024537.6	ENSMUST00000025418.4	1059	7	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_3	27.1871088733041	4545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCGGTTTTATCTGGAAAG	NA	False	NA	26	True	AATAAA	-32	NA	67774668	67787232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_67774806_67777378_67777551_67779062_67779122_67781197_67781317_67781842_67782017_67786222_67786344_67786955
transcript_44724.known	chr18	+	795	3	FSM	ENSMUSG00000024537.6	ENSMUST00000236522.2	795	3	0	0	0	0	multi-exon	FALSE	canonical	3	436	junction_2	23.5	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	67774677	67779557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_67774806_67777378_67777551_67779062
transcript_4473.nic	chr1	+	2491	15	NIC	ENSMUSG00000053286.12	novel	2749	15	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	47.2939138337512	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGACTGGGCTCGCGT	NA	False	NA	15	True	AATAAA	-16	NA	151304378	151333912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_151304682_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997_151319078_151324004_151324249_151325650_151325864_151327798_151327990_151328827_151328907_151329635_151329803_151330728_151330792_151333213_151333341_151333432
transcript_44731.known	chr18	-	1568	10	FSM	ENSMUSG00000024539.18	ENSMUST00000025420.14	1568	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	132.404915801473	1367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGTTGGTTTGTGTGTGT	NA	False	NA	-15	True	ATTAAA	-18	NA	67857658	67798581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_67798945_67805736_67805839_67808789_67808957_67810779_67810933_67813909_67814120_67814512_67814648_67821960_67822060_67828693_67828795_67844906_67844998_67857511
transcript_44732.known	chr18	-	1497	10	FSM	ENSMUSG00000024539.18	ENSMUST00000120934.8	1497	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	167.715440958197	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTTGGTTTGTGTGTGTG	NA	False	NA	-14	True	ATTAAA	-19	NA	67857643	67798580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_67798945_67805736_67805839_67808789_67808900_67810779_67810933_67813909_67814120_67814512_67814648_67821960_67822060_67828693_67828795_67844906_67844998_67857511
transcript_44733.known	chr18	-	2667	9	FSM	ENSMUSG00000024539.18	ENSMUST00000122412.2	2667	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	140.12890271104	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACATTGTCCCTTACCTTT	NA	False	NA	NA	False	AATAAA	-21	NA	67857665	67804281	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_67805839_67808789_67808957_67810779_67810933_67813909_67814120_67814512_67814648_67821960_67822060_67828693_67828795_67844906_67844998_67857511
transcript_44741.known	chr18	-	698	2	FSM	ENSMUSG00000097835.2	ENSMUST00000180450.2	698	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATTTATGAAAGCTGTTT	NA	False	NA	NA	False	AATAAA	-33	NA	67907927	67906781	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_67907025_67907472
transcript_44743.known	chr18	+	3542	9	FSM	ENSMUSG00000079614.5	ENSMUST00000025421.9	3542	9	0	0	0	0	multi-exon	FALSE	canonical	3	1509	junction_8	173.331285043987	800	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGTTGTCTTATAAAAAAG	NA	False	NA	19	True	AATAAA	-21	NA	67907945	67928557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933_67925085_67926219
transcript_44744.known	chr18	+	1684	8	FSM	ENSMUSG00000079614.5	ENSMUST00000237700.2	1684	8	0	0	0	0	multi-exon	FALSE	canonical	3	1621	junction_6	144.078210053585	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTTTGTGAGACCAGTG	NA	False	NA	NA	False	AATAAA	-11	NA	67908044	67925663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933
transcript_44747.known	chr18	+	8093	46	FSM	ENSMUSG00000024542.10	ENSMUST00000025425.7	8093	46	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_4	30.2980747463157	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTCCTTTTTGTATTTTA	107	False	NA	10	True	AATAAA	-19	NA	67933176	68018241	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_67933257_67933724_67933896_67936058_67936227_67937435_67937565_67940327_67940477_67943146_67943200_67945396_67945518_67946942_67947071_67948924_67949067_67949803_67949932_67951840_67952202_67953359_67953504_67956345_67956411_67957652_67957863_67961421_67961546_67962903_67963035_67967566_67968390_67968479_67968595_67970987_67971157_67974054_67974932_67976206_67976356_67980422_67980654_67983182_67983309_67983480_67983625_67983745_67983807_67984735_67984876_67985027_67985121_67985974_67986094_67987121_67987299_67988355_67988447_67989218_67989396_67991060_67991322_67991925_67992042_67993604_67993715_67995479_67995625_67998660_67998852_67999501_67999626_68001511_68001618_68002400_68002609_68003642_68003723_68004532_68004629_68011026_68011147_68011609_68011732_68013821_68013949_68014354_68014414_68017809
transcript_44749.nnic	chr18	+	757	5	NNC	ENSMUSG00000024542.10	novel	2607	16	NA	NA	-33	18	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_4	52.1410347039642	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGAAAAAGAAATTATT	74	False	NA	NA	False	NA	NA	NA	67933143	67938465	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_67933257_67933724_67933896_67936058_67936227_67937435_67937565_67938289
transcript_44751.known	chr18	+	1425	4	FSM	ENSMUSG00000024542.10	ENSMUST00000224387.2	1425	4	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_2	11.1455023315337	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	113	False	NA	NA	False	NA	NA	NA	67933182	67938447	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_67933257_67933724_67933896_67936058_67936227_67937435
transcript_44770.known	chr18	+	5008	11	FSM	ENSMUSG00000009535.14	ENSMUST00000009679.11	5008	11	0	0	0	0	multi-exon	FALSE	canonical	3	765	junction_7	139.06832852954	1029	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTTGATTCATTTCTAG	NA	False	NA	NA	False	NA	NA	NA	68433425	68457923	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296_68453331_68454388
transcript_44771.known	chr18	+	2474	7	FSM	ENSMUSG00000009535.14	ENSMUST00000151833.2	2474	7	0	0	0	0	multi-exon	FALSE	canonical	3	867	junction_3	84.7042239534461	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAATGTGAAA	NA	False	NA	NA	False	AATAGA	-5	NA	68433468	68448521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058
transcript_44772.known	chr18	+	1852	10	FSM	ENSMUSG00000009535.14	ENSMUST00000025427.14	1852	10	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_6	337.084266125157	2495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTGCAATTCTGAGACTC	NA	False	NA	87	True	AATAAA	-17	NA	68433470	68454977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68451064_68451183_68452188_68452291_68453296_68453331_68454388
transcript_44773.known	chr18	+	1162	2	FSM	ENSMUSG00000007480.6	ENSMUST00000239469.2	1162	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCGTCTCTCAGTCAATTA	NA	False	NA	NA	False	ATTAAA	-21	NA	68470673	68472782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_68470797_68471743
transcript_44776.known	chr18	+	2986	20	FSM	ENSMUSG00000053477.19	ENSMUST00000202116.4	2986	20	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_17	23.6466368624176	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCTCCCACACTGTGGAG	3190	False	NA	NA	False	NA	NA	NA	69478789	69816461	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_69479437_69480349_69480442_69482142_69482216_69594932_69594995_69598421_69598519_69653035_69653098_69697104_69697235_69697705_69697756_69766647_69766754_69769901_69770036_69775953_69776087_69784292_69784361_69785464_69785544_69788031_69788109_69790817_69791022_69808769_69808906_69811037_69811189_69814639_69814870_69815753_69815895_69816147
transcript_44777.known	chr18	+	2192	20	FSM	ENSMUSG00000053477.19	ENSMUST00000114980.8	2192	20	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_6	22.735258229433	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAGCATTCCCAATTATC	3831	False	NA	64	True	AATATA	-40	NA	69479430	69816296	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_69479437_69480349_69480442_69482142_69482216_69594932_69594995_69598421_69598519_69653035_69653098_69697104_69697235_69697705_69697756_69766647_69766754_69769901_69770036_69775953_69776087_69784292_69784361_69785464_69785544_69788031_69788109_69790817_69791022_69808769_69808906_69811037_69811201_69814639_69814870_69815753_69815895_69816147
transcript_44778.known	chr18	+	794	6	FSM	ENSMUSG00000053477.19	ENSMUST00000155695.5	794	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	38.8823867580168	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTATTTCTTTTTAATG	3244	False	NA	NA	False	AATAAA	-36	NA	69478843	69620921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_69479011_69480349_69480442_69482142_69482216_69594932_69594995_69598421_69598519_69620618
transcript_44789.nic	chr18	+	1301	4	ISM	ENSMUSG00000053477.19	ENSMUST00000114978.9	2437	13	84909	-328	-1802	140	3prime_fragment	FALSE	canonical	3	57	junction_1	39.4067112163511	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGTTGATTTGTTTCA	NA	False	NA	NA	False	NA	NA	NA	69810967	69816844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_+_69811201_69814639_69814870_69815753_69815895_69816147
transcript_44791.nic	chr18	+	708	4	ISM	ENSMUSG00000053477.19	ENSMUST00000202474.4	1810	13	65459	0	-1796	0	3prime_fragment	FALSE	canonical	3	43	junction_1	45.7626728046147	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGTTATGAATCGCAGACG	NA	False	NA	37	True	AATATA	-13	NA	69810973	69816269	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_+_69811189_69814639_69814870_69815753_69815895_69816147
transcript_44792.nic	chr18	+	770	4	ISM	ENSMUSG00000053477.19	ENSMUST00000202474.4	1810	13	65459	-62	-1796	0	3prime_fragment	FALSE	canonical	3	43	junction_1	45.7626728046147	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAAAAAATGAATGAAA	NA	False	NA	99	True	NA	NA	NA	69810973	69816331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_+_69811189_69814639_69814870_69815753_69815895_69816147
transcript_44798.known	chr18	+	4250	21	FSM	ENSMUSG00000053477.19	ENSMUST00000066717.12	4250	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	35.5343495789637	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	1617	False	NA	NA	False	AATACA	-35	NA	69477216	69817414	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_69478097_69480349_69480442_69482142_69482216_69546712_69546779_69594932_69594995_69598421_69598519_69653035_69653098_69697104_69697235_69697705_69697756_69766647_69766754_69769901_69770036_69775953_69776087_69784292_69784361_69785464_69785544_69788031_69788109_69790817_69791022_69808769_69808906_69811037_69811201_69814639_69814870_69815753_69815895_69816147
transcript_44802.nnic	chr18	-	603	3	Intergenic	novelGene_66	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACTAGTATACAATGCCTG	NA	False	NA	NA	False	NA	NA	NA	69912886	69902830	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr18_-_69903186_69908344_69908478_69912771
transcript_44817.known	chr18	+	1618	11	FSM	ENSMUSG00000038903.14	ENSMUST00000043929.11	1618	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	8.64869932417586	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTCTCATGTCCTTCCA	NA	False	NA	3	True	AATAAA	-14	NA	70058536	70102555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_70058692_70071912_70072042_70073170_70073258_70076798_70076934_70079494_70079621_70080121_70080251_70089052_70089136_70093471_70093578_70094530_70094615_70099860_70099938_70102048
transcript_44818.known	chr18	+	1235	8	FSM	ENSMUSG00000038903.14	ENSMUST00000080050.6	1235	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	13.1738764381697	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTCTCATGTCCTTCCA	NA	False	NA	3	True	AATAAA	-14	NA	70058646	70102555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_70058692_70071912_70072042_70073170_70073258_70076798_70076934_70079494_70079621_70080121_70080251_70099860_70099938_70102048
transcript_44819.known	chr18	-	2671	6	FSM	ENSMUSG00000024511.16	ENSMUST00000069749.9	2671	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.16619037896906	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTCGAGTTTTCTGTTT	NA	False	NA	NA	False	AATATA	-18	NA	70186659	70116726	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_70118449_70119982_70120107_70122614_70122719_70127547_70127634_70129139_70129312_70186196
transcript_4482.known	chr1	+	1567	7	FSM	ENSMUSG00000053286.12	ENSMUST00000188179.7	1567	7	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_2	23.1732604525129	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	151304292	151319459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_151304854_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997
transcript_44823.known	chr18	+	1496	9	FSM	ENSMUSG00000079608.11	ENSMUST00000114959.9	1496	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.87082869338697	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATGGGTTATAGTATACA	NA	False	NA	NA	False	NA	NA	NA	70605524	70634137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_70605640_70606272_70606426_70607355_70607437_70609170_70609265_70609452_70609503_70616482_70616610_70629184_70629303_70631618_70631713_70633473
transcript_44824.known	chr18	+	1167	9	FSM	ENSMUSG00000079608.11	ENSMUST00000168249.9	1167	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.87082869338697	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAACATAACATTAAATAATG	NA	False	NA	NA	False	ATTAAA	-15	NA	70605642	70633877	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_70605689_70606272_70606426_70607355_70607437_70609170_70609265_70609452_70609503_70616482_70616610_70629184_70629303_70631618_70631713_70633473
transcript_44825.known	chr18	+	976	9	FSM	ENSMUSG00000079608.11	ENSMUST00000164223.8	976	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.87082869338697	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCACAGCCTACTAGTAAGT	NA	False	NA	NA	False	ATTAAA	-18	NA	70605698	70633707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_70605724_70606272_70606426_70607355_70607437_70609170_70609265_70609452_70609503_70616482_70616610_70629184_70629303_70631618_70631713_70633473
transcript_44826.known	chr18	+	1185	9	FSM	ENSMUSG00000079608.11	ENSMUST00000174118.8	1185	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.96452920568771	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAACATTAAATAATGTGCC	NA	False	NA	NA	False	ATTAAA	-19	NA	70605736	70633881	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_70605797_70606272_70606426_70607355_70607437_70609170_70609265_70609452_70609503_70616482_70616610_70629184_70629303_70631618_70631713_70633473
transcript_44827.nic	chr18	-	3571	9	NIC	ENSMUSG00000044906.7	novel	2291	9	NA	NA	-319	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_5	57.5298835389052	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGTTGTTACGTCTCCT	NA	False	NA	-2	True	AATAAA	-18	NA	70605899	70585282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600401_70600557_70600829_70601589_70602519_70602849_70604743_70605051_70605361
transcript_44830.nnic	chr18	-	3244	9	NIC	ENSMUSG00000044906.7	novel	1715	9	NA	NA	-287	0	combination_of_known_splicesites	FALSE	canonical	3	27	junction_5	68.2567533288831	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGTTGTTACGTCTCCT	NA	False	NA	-2	True	AATAAA	-18	NA	70605867	70585282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600401_70600557_70601124_70601589_70602519_70602849_70604743_70605051_70605361
transcript_44832.known	chr18	-	2291	9	FSM	ENSMUSG00000044906.7	ENSMUST00000067556.4	2291	9	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_5	54.5590276672889	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAAAAGGGGAAGACAC	NA	False	NA	NA	False	NA	NA	NA	70605551	70586210	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600405_70600557_70600829_70601589_70602519_70602849_70604743_70605051_70605361
transcript_4484.known	chr1	-	3160	7	FSM	ENSMUSG00000026484.14	ENSMUST00000076110.11	3160	7	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_6	52.4404424085076	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTTATTAGATGTGTACT	NA	False	NA	-6	True	CATAAA	-19	NA	151376706	151345156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_151347169_151347388_151347561_151348822_151349096_151351890_151352107_151352622_151352784_151354287_151354377_151376469
transcript_44842.nic	chr18	-	3844	8	NIC	ENSMUSG00000044906.7	novel	1715	9	NA	NA	-319	0	intron_retention	FALSE	canonical	3	82	junction_4	46.2782180878624	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGTTGTTACGTCTCCT	NA	False	NA	-2	True	AATAAA	-18	NA	70605899	70585282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600401_70601589_70602519_70602849_70604743_70605051_70605361
transcript_44854.known	chr18	-	3317	6	FSM	ENSMUSG00000044906.7	ENSMUST00000212683.2	3317	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	79.1722173492697	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATATGTTGTTACGTCTCC	NA	False	NA	-3	True	AATAAA	-17	NA	70605580	70585283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_70586460_70597032_70597136_70600405_70601589_70602519_70602849_70604743_70605051_70605361
transcript_44855.known	chr18	-	4393	4	FSM	ENSMUSG00000044906.7	ENSMUST00000237800.2	4393	4	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_3	21.483844059096	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATTAGGTAAATTACTGA	NA	False	NA	NA	False	AATAAA	-21	NA	70605575	70598045	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_70601589_70602519_70602849_70604743_70605051_70605361
transcript_44856.nic	chr18	-	1339	3	ISM	ENSMUSG00000044906.7	ENSMUST00000237800.2	4393	4	-378	4363	-373	-4363	5prime_fragment	FALSE	canonical	3	180	junction_2	26	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCACAAACAAACCATATTG	NA	False	NA	NA	False	NA	NA	NA	70605953	70602408	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_-_70602849_70604743_70605051_70605361
transcript_44861.known	chr18	-	2736	10	FSM	ENSMUSG00000038425.19	ENSMUST00000161542.8	2736	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_9	94.1501296524877	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCTCACTGTAAGTTGTG	NA	False	NA	-12	True	AATAAA	-23	NA	70663209	70641750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70661772_70661899_70662821
transcript_44862.known	chr18	-	2591	10	FSM	ENSMUSG00000038425.19	ENSMUST00000043286.15	2591	10	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_9	76.3322820564839	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAGGCTCTCACTGTAAGT	NA	False	NA	-16	True	AATAAA	-19	NA	70663505	70641754	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70661772_70661899_70663258
transcript_44866.nnic	chr18	-	2377	9	NNC	ENSMUSG00000038425.19	novel	2778	10	NA	NA	-47	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_6	112.236357745608	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTAGGCTCTCACTGTAAG	NA	False	NA	-17	True	AATAAA	-18	NA	70663386	70641755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658414_70658600_70659627_70659793_70663258
transcript_44869.nnic	chr18	-	2345	9	NIC	ENSMUSG00000038425.19	novel	2778	10	NA	NA	-47	0	combination_of_known_splicesites	FALSE	canonical	3	116	junction_8	75.0961883187156	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTAGGCTCTCACTGTAAG	NA	False	NA	-17	True	AATAAA	-18	NA	70663386	70641755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70663258
transcript_44878.nic	chr18	-	944	5	ISM	ENSMUSG00000038425.19	ENSMUST00000043286.15	2591	10	127	14336	-39	-14331	5prime_fragment	FALSE	canonical	3	102	junction_4	76.2508196677255	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGCAAGTACTTTTTCC	NA	False	NA	NA	False	AATAAA	-15	NA	70663378	70656090	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_-_70656471_70658446_70658600_70659627_70659793_70661772_70661899_70663258
transcript_44879.nnic	chr18	-	826	4	NIC	ENSMUSG00000038425.19	novel	2778	10	NA	NA	-47	-14331	combination_of_known_splicesites	FALSE	canonical	3	116	junction_3	81.3893249893512	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGCAAGTACTTTTTCC	NA	False	NA	NA	False	AATAAA	-15	NA	70663386	70656090	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr18_-_70656471_70658446_70658600_70659627_70659793_70663258
transcript_44882.known	chr18	+	1953	7	FSM	ENSMUSG00000024513.17	ENSMUST00000074058.11	1953	7	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_4	103.071846570999	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTGGAACTTCTTTTGTT	NA	False	NA	18	True	AATAAA	-18	NA	70701259	70759202	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_70702039_70713723_70713884_70726273_70726412_70749635_70749727_70750906_70751085_70755653_70755793_70758734
transcript_44883.known	chr18	+	1290	3	FSM	ENSMUSG00000024513.17	ENSMUST00000114946.4	1290	3	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_2	64.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGGAAGTGCCTGGTGT	NA	False	NA	13	True	AATAAA	-30	NA	70701404	70715983	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_70702039_70713723_70713884_70715487
transcript_44885.known	chr18	-	2233	11	FSM	ENSMUSG00000024515.14	ENSMUST00000114939.2	2233	11	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_1	24.1669195389069	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGAGGAGTCGGCCAGTG	5221	False	NA	73	True	NA	NA	NA	73811302	73773071	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_73773541_73774853_73774993_73781955_73782125_73782796_73782981_73790265_73790317_73791638_73791756_73791849_73791970_73795728_73795939_73808231_73808262_73808841_73809017_73810733
transcript_44886.known	chr18	-	4971	4	FSM	ENSMUSG00000036941.3	ENSMUST00000041138.3	4971	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	4.32049379893857	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCTTGTCCTGCGGTTCT	NA	False	NA	NA	False	NA	NA	NA	73887550	73868108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_73872372_73875407_73875873_73880237_73880403_73887472
transcript_4489.known	chr1	+	1527	3	FSM	ENSMUSG00000053286.12	ENSMUST00000185230.7	1527	3	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_2	4.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGAAAAAGAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-21	NA	151304417	151312458	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_151304854_151309544_151309656_151311478
transcript_44890.known	chr18	-	715	4	FSM	ENSMUSG00000024556.5	ENSMUST00000237619.2	715	4	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_1	22.8375908439475	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATCTTTGTTTTTGTAG	360	False	NA	NA	False	AATAAA	-13	NA	73948520	73930732	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_73931050_73934799_73934934_73938122_73938241_73948374
transcript_44891.known	chr18	-	2638	16	FSM	ENSMUSG00000024556.5	ENSMUST00000025439.5	2638	16	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_8	47.5095312074909	917	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAATGCCTTCTTTTGTA	371	False	NA	NA	False	AATAAA	-16	NA	73948509	73902973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_73903880_73906200_73906300_73908449_73908521_73914112_73914216_73918765_73918909_73921424_73921540_73924154_73924269_73924679_73924778_73924871_73924982_73927516_73927621_73927851_73928014_73929384_73929461_73930899_73931050_73934799_73934934_73938122_73938241_73948374
transcript_44892.nnic	chr18	-	554	3	NNC	ENSMUSG00000024558.13	novel	4594	6	NA	NA	-22	-87549	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	2	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCAGAGTTGGTTTTTTT	9796	False	NA	NA	False	AATAAA	-18	NA	74198022	74191789	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_-_74192051_74193461_74193643_74197910
transcript_44895.nnic	chr18	-	798	3	NNC	ENSMUSG00000024558.13	novel	426	2	NA	NA	-30	-87547	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2.5	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGAGTTGGTTTTTTTAC	9358	False	NA	NA	False	AATAAA	-20	NA	74198460	74191787	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_-_74192051_74193461_74193648_74198111
transcript_449.known	SIRV5	+	526	3	FSM	SIRV5A	SIRV503	526	3	0	0	0	0	multi-exon	FALSE	canonical	3	1532	junction_2	5146.5	7743	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGTCGCTTGCCCAATTG	NA	False	NA	NA	False	NA	NA	NA	8201	11142	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV5_+_8586_10858_10992_11133
transcript_44901.known	chr18	-	2630	7	FSM	ENSMUSG00000036223.17	ENSMUST00000040188.16	2630	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	177.375699826354	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAGGCATGGTGGCTTCC	6765	False	NA	-8	True	NA	NA	NA	74340850	74328369	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_74330123_74330584_74330755_74332970_74333109_74335660_74335759_74337334_74337460_74339859_74339956_74340600
transcript_44906.known	chr18	-	2605	7	FSM	ENSMUSG00000036223.17	ENSMUST00000177604.2	2605	7	0	0	0	0	multi-exon	FALSE	canonical	3	429	junction_6	32.9768437274131	1155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAGGCATGGTGGCTTCC	6726	False	NA	-8	True	NA	NA	NA	74340889	74328369	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_74330123_74330584_74330755_74332970_74333109_74335660_74335759_74337334_74337460_74339859_74339956_74340664
transcript_44907.known	chr18	-	1256	6	FSM	ENSMUSG00000036223.17	ENSMUST00000237276.2	1256	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	190.763099157043	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAACAGGACTCATTTCTT	6797	False	NA	NA	False	TATAAA	-6	NA	74340818	74329549	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_74330123_74330584_74330755_74332970_74333109_74337334_74337460_74339859_74339956_74340664
transcript_44908.known	chr18	+	2620	15	FSM	ENSMUSG00000024560.8	ENSMUST00000025444.8	2620	15	0	0	0	0	multi-exon	TRUE	canonical	3	205	junction_6	27.3663729300567	794	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGCTCTCTCTCAATAGT	NA	False	NA	14	True	AATAAA	-17	NA	74349201	74354564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_74349554_74350237_74350357_74350459_74350561_74350831_74351068_74351156_74351349_74351699_74351727_74351802_74352049_74352201_74352310_74352453_74352639_74352908_74353117_74353191_74353303_74353427_74353478_74353579_74353677_74353898_74354052_74354129
transcript_44914.known	chr18	+	2838	16	FSM	ENSMUSG00000024561.12	ENSMUST00000224047.2	2838	16	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_11	21.6794833886788	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74401361	74415756	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_74401505_74402473_74402610_74406279_74406395_74406483_74406729_74406805_74406889_74407086_74407128_74407485_74407633_74407715_74407845_74408218_74408330_74408413_74408489_74408974_74409143_74409477_74409787_74409872_74410011_74410371_74410501_74410587_74410650_74414949
transcript_44915.known	chr18	+	2833	15	FSM	ENSMUSG00000024561.12	ENSMUST00000097530.5	2833	15	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_10	20.6853245819645	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGCATAAGGTTGCCATG	NA	False	NA	NA	False	NA	NA	NA	74401245	74415803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_74401505_74402473_74402610_74406279_74406395_74406483_74406729_74406805_74406889_74407086_74407128_74407485_74407633_74407715_74407845_74408218_74408330_74408413_74408489_74409477_74409787_74409872_74410011_74410371_74410501_74410587_74410650_74414949
transcript_44919.known	chr18	+	1349	2	FSM	ENSMUSG00000024561.12	ENSMUST00000224907.2	1349	2	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGCTGAATTATTTTCT	NA	False	NA	NA	False	NA	NA	NA	74400675	74402993	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_74401505_74402473
transcript_4492.known	chr1	+	2441	15	FSM	ENSMUSG00000053286.12	ENSMUST00000189655.2	2441	15	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	65.1973456327098	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGACTGGGCTCGCGT	NA	False	NA	15	True	AATAAA	-16	NA	151304456	151333912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_151304682_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997_151319078_151323976_151324249_151325650_151325864_151327798_151327990_151328827_151328907_151329635_151329803_151330728_151330792_151333213_151333341_151333432
transcript_44921.known	chr18	+	1888	8	FSM	ENSMUSG00000035394.12	ENSMUST00000114895.4	1888	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.451753951452626	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGGGTTGCAGTATAGTT	NA	False	NA	NA	False	NA	NA	NA	74416160	74493057	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_74416338_74432182_74432413_74433215_74433390_74437798_74438103_74438601_74438821_74440228_74440446_74462470_74462574_74492593
transcript_44923.known	chr18	+	1516	10	FSM	ENSMUSG00000036880.11	ENSMUST00000041053.11	1516	10	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_8	17.7325814376939	1003	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAACCTTTTCTTGTTGGT	NA	False	NA	13	True	AATAAA	-17	NA	74912267	74939279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_74912337_74920189_74920357_74925421_74925551_74926357_74926475_74928201_74928350_74931382_74931559_74932115_74932246_74934367_74934439_74937071_74937227_74938925
transcript_44924.known	chr18	-	3787	10	FSM	ENSMUSG00000053846.6	ENSMUST00000066532.5	3787	10	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_4	1.89215404065849	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGTTGTCCTGTAACTCA	NA	False	NA	NA	False	NA	NA	NA	75094334	75072392	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_75074410_75076410_75076516_75078874_75079094_75080076_75080198_75081043_75081287_75082128_75082351_75087248_75087361_75088489_75088670_75090268_75090451_75093948
transcript_4493.known	chr1	+	2371	9	FSM	ENSMUSG00000053286.12	ENSMUST00000188843.7	2371	9	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_8	23.5677215699779	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAGAAAAGAAAAGC	NA	False	NA	NA	False	NA	NA	NA	151304392	151326692	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_151304854_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997_151319078_151324004_151324249_151325650
transcript_44937.known	chr18	+	775	7	FSM	ENSMUSG00000062328.9	ENSMUST00000079716.6	775	7	0	0	0	0	multi-exon	FALSE	canonical	3	6761	junction_1	2088.63605148325	7311	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATGACTGTCTAGTAGC	NA	False	NA	21	True	ATTAAA	-37	NA	75133547	75136452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_75133615_75134261_75134315_75134420_75134462_75134736_75134872_75135094_75135194_75135731_75135924_75136264
transcript_4494.known	chr1	-	3201	8	FSM	ENSMUSG00000026484.14	ENSMUST00000187048.7	3201	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	248.196597519805	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTATTAGATGTGTACTC	NA	False	NA	-5	True	CATAAA	-20	NA	151376562	151345155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_151347169_151347388_151347561_151348822_151349096_151351890_151352107_151352622_151352784_151354287_151354377_151363022_151363207_151376469
transcript_44943.known	chr18	+	979	3	FSM	ENSMUSG00000036299.6	ENSMUST00000040284.6	979	3	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_1	315	1312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTCCTGCTTTTTGTCTTT	NA	False	NA	26	True	ATTAAA	-17	NA	75138938	75143004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_75139086_75141721_75141898_75142348
transcript_44944.known	chr18	+	1266	3	FSM	ENSMUSG00000036299.6	ENSMUST00000237263.2	1266	3	0	0	0	0	multi-exon	FALSE	canonical	3	388	junction_1	205.5	1359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCGATGTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	75138970	75143223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_75139186_75141721_75141898_75142348
transcript_44945.known	chr18	+	524	3	FSM	ENSMUSG00000036299.6	ENSMUST00000236421.2	524	3	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	354	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAAGGTCCGTGTGAGCA	NA	False	NA	NA	False	ATTAAA	-43	NA	75138939	75142664	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_75138972_75141721_75141898_75142348
transcript_44946.known	chr18	+	2456	17	FSM	ENSMUSG00000035765.11	ENSMUST00000039608.9	2456	17	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_13	17.5886149255705	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGTGACTTATTTTTAA	NA	False	NA	18	True	AATAAA	-18	NA	75151855	75420035	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_75152056_75176149_75176341_75186051_75186105_75188351_75188446_75189700_75189835_75196171_75196245_75213273_75213400_75215435_75215579_75247860_75248044_75252181_75252361_75256528_75256655_75258494_75258609_75259895_75259991_75332233_75332337_75363060_75363244_75376355_75376470_75419690
transcript_44952.known	chr18	+	1571	9	FSM	ENSMUSG00000035765.11	ENSMUST00000236220.2	1571	9	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_8	64.1424196612507	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGTTTGTGTTATCTGT	NA	False	NA	NA	False	NA	NA	NA	75151851	75239490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_75152056_75176149_75176341_75186051_75186105_75188351_75188446_75189700_75189835_75196171_75196245_75213273_75213400_75215435_75215579_75238937
transcript_44956.nnic	chr18	+	1007	6	NNC	ENSMUSG00000035765.11	novel	2456	17	NA	NA	1052	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	85.1859143286025	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGTGACTTATTTTTAA	NA	False	NA	18	True	AATAAA	-18	NA	75259547	75420035	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_75259715_75259895_75259991_75332233_75332337_75363060_75363244_75376355_75376470_75419690
transcript_44959.nnic	chr18	+	984	5	NNC	ENSMUSG00000035765.11	novel	2456	17	NA	NA	14801	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	95.236547606473	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGTGACTTATTTTTAA	NA	False	NA	18	True	AATAAA	-18	NA	75273296	75420035	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_75273536_75332233_75332337_75363060_75363244_75376355_75376470_75419690
transcript_44960.nnic	chr18	+	879	5	NNC	ENSMUSG00000035765.11	novel	2456	17	NA	NA	58366	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	95.236547606473	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGTGACTTATTTTTAA	NA	False	NA	18	True	AATAAA	-18	NA	75316861	75420035	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_75316996_75332233_75332337_75363060_75363244_75376355_75376470_75419690
transcript_44970.nnic	chr18	-	512	3	Antisense	novelGene_ENSMUSG00000035765.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_2	1	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTAAGAGGTTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	75327915	75324788	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr18_-_75324996_75327096_75327256_75327769
transcript_44974.nnic	chr18	+	571	2	NNC	ENSMUSG00000035765.11	novel	2456	17	NA	NA	120149	2	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	0	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTGACTTATTTTTAAAC	8068	False	NA	20	True	AATAAA	-20	NA	75378644	75420037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_75378869_75419690
transcript_44977.nnic	chr18	-	813	2	NNC	ENSMUSG00000102047.2	novel	650	2	NA	NA	-12609	7	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	0	23	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGCTGTCTCATGCTCC	NA	False	NA	NA	False	AATAAA	-39	NA	75443009	75421718	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_-_75422241_75442718
transcript_44980.known	chr18	-	690	2	FSM	ENSMUSG00000092569.2	ENSMUST00000174338.2	690	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTGTTTGTTTTGGGG	NA	False	NA	NA	False	NA	NA	NA	75500159	75498402	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_75498934_75500000
transcript_44986.known	chr18	-	6031	12	FSM	ENSMUSG00000052928.10	ENSMUST00000165559.3	6031	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.63165724111457	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	75830625	75564294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_75568481_75570241_75570296_75604935_75605092_75652809_75653179_75654447_75654941_75698074_75698152_75738698_75738775_75743739_75743845_75744776_75744851_75757299_75757372_75770203_75770410_75830462
transcript_44988.known	chr18	+	8089	11	FSM	ENSMUSG00000024563.17	ENSMUST00000168423.9	8089	11	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_5	13.3850663054017	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGGAGTTGAGTATGGAA	NA	False	NA	10	True	AATAAA	-13	NA	76374650	76444034	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_76375051_76395510_76395799_76419930_76420021_76420998_76421193_76422109_76422245_76425980_76426056_76431518_76431573_76432853_76433067_76435149_76435288_76435453_76435599_76437677
transcript_4499.known	chr1	+	1296	6	FSM	ENSMUSG00000026483.14	ENSMUST00000111875.2	1296	6	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_3	9.98799279134702	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGTGGTATTGTGTAAT	NA	False	NA	NA	False	ATTAAA	-6	NA	151447246	151565933	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_151447336_151512154_151512286_151517178_151517311_151520625_151520741_151525029_151525195_151565269
transcript_45.known	ERCC-00095	+	513	1	FSM	ERCC-00095A	DQ516759	513	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1028	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	513	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00095_+_0_500
transcript_4500.known	chr1	-	1381	2	FSM	ENSMUSG00000100594.2	ENSMUST00000186444.2	1381	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGCTTTTGGTCATGGT	NA	False	NA	NA	False	NA	NA	NA	151630769	151624699	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_151625980_151630668
transcript_45002.known	chr18	+	1645	10	FSM	ENSMUSG00000024563.17	ENSMUST00000091831.13	1645	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	75.1282031834933	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCATCAAAGACTCGCTGT	NA	False	NA	NA	False	NA	NA	NA	76374771	76437801	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_76375051_76395510_76395799_76420998_76421193_76422109_76422245_76425980_76426056_76431518_76431573_76432853_76433067_76435149_76435288_76435453_76435599_76437677
transcript_45013.known	chr18	+	1538	8	FSM	ENSMUSG00000025421.16	ENSMUST00000145634.9	1538	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	170.606361581991	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTAATTAGACATTGTT	NA	False	NA	19	True	NA	NA	NA	77031839	77059101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_77031882_77033038_77033054_77038808_77038920_77042673_77042883_77044534_77044620_77052746_77052964_77054839_77054904_77058306
transcript_45014.known	chr18	+	1640	8	FSM	ENSMUSG00000025421.16	ENSMUST00000026485.15	1640	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	170.606361581991	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTAATTAGACATTGTT	NA	False	NA	19	True	NA	NA	NA	77032079	77059101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_77032224_77033038_77033054_77038808_77038920_77042673_77042883_77044534_77044620_77052746_77052964_77054839_77054904_77058306
transcript_45017.known	chr18	+	5477	7	FSM	ENSMUSG00000025421.16	ENSMUST00000097522.11	5477	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	128.264050562372	607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATATATAAAATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	77031787	77063003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_77031882_77038808_77038920_77042673_77042883_77044534_77044620_77052746_77052964_77054839_77054904_77058306
transcript_4502.known	chr1	-	9559	6	FSM	ENSMUSG00000032666.17	ENSMUST00000044581.14	9559	6	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_2	7.73045923603508	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGGCTCTGTTCTTTCT	NA	False	NA	NA	False	ATTAAA	-16	NA	151965876	151760274	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_151769184_151791232_151791294_151796797_151796875_151856176_151856272_151882295_151882519_151965682
transcript_45023.known	chr18	+	3126	7	FSM	ENSMUSG00000025421.16	ENSMUST00000150990.9	3126	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	156.505235979148	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAATCGGAAACACTCCA	NA	False	NA	NA	False	NA	NA	NA	77032079	77060598	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_77032228_77038808_77038920_77042673_77042883_77044534_77044620_77052746_77052964_77054839_77054904_77058306
transcript_45026.known	chr18	+	3069	7	FSM	ENSMUSG00000025421.16	ENSMUST00000148955.3	3069	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	159.414292542001	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAATCGGAAACACTCCA	NA	False	NA	NA	False	NA	NA	NA	77032132	77060598	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_77032224_77038808_77038920_77042673_77042883_77044534_77044620_77052746_77052964_77054839_77054904_77058306
transcript_45037.known	chr18	+	1704	5	FSM	ENSMUSG00000025421.16	ENSMUST00000097521.12	1704	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	173.436587835439	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATGAAAATGCTATGTTTT	NA	False	NA	NA	False	NA	NA	NA	77031822	77049749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_77031882_77038808_77038920_77042673_77042883_77044534_77044620_77048509
transcript_45048.known	chr18	+	1402	3	FSM	ENSMUSG00000090000.3	ENSMUST00000026487.6	1402	3	0	0	0	0	multi-exon	FALSE	canonical	3	1641	junction_2	78	6805	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCGTCTGATTTATGCCTT	NA	False	NA	15	True	AATAAA	-17	NA	77017712	77029308	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_77017913_77027263_77027366_77028208
transcript_45049.known	chr18	+	1503	4	FSM	ENSMUSG00000090000.3	ENSMUST00000136800.2	1503	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	763.929461548789	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATATTAAGCGTCTGATTT	NA	False	NA	8	True	AATAAA	-10	NA	77017740	77029301	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_77017913_77018319_77018456_77027263_77027366_77028208
transcript_45052.nnic	chr18	-	1708	13	NNC	ENSMUSG00000025420.14	novel	1674	14	NA	NA	13972	-858	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_6	7.91754381105656	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCCTTTGTCAGACTTTA	NA	False	NA	NA	False	NA	NA	NA	77120967	77081752	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_-_77082201_77085294_77085387_77090126_77090246_77090432_77090497_77092418_77092518_77095203_77095282_77095480_77095580_77098642_77098742_77099679_77099801_77103697_77103741_77105156_77105324_77106880_77106952_77120759
transcript_45056.nnic	chr18	-	1615	6	NNC	ENSMUSG00000025420.14	novel	1515	6	NA	NA	13972	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	3.26190128606002	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTATTTCTGCTTTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	77120967	77097736	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_-_77098742_77099679_77099801_77103697_77103741_77105156_77105324_77106880_77106952_77120759
transcript_45057.known	chr18	-	1515	6	FSM	ENSMUSG00000025420.14	ENSMUST00000154665.2	1515	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	10.4192130221049	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTATTTCTGCTTTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	77134983	77097736	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_77098742_77099685_77099801_77103697_77103741_77105156_77105324_77106880_77106952_77134869
transcript_45058.nnic	chr18	-	1128	6	NNC	ENSMUSG00000025420.14	novel	1674	14	NA	NA	13972	5	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	3.26190128606002	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGTGTGCTGCATTATT	NA	False	NA	NA	False	GATAAA	-1	NA	77120967	77098223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_-_77098742_77099679_77099801_77103697_77103741_77105156_77105324_77106880_77106952_77120759
transcript_45067.nnic	chr18	+	1973	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26831	-136	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_1	376.676732685662	71	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGATTGGAAAAGAGCTTGA	6254	False	NA	7	True	AATAAA	-17	NA	77126072	77234497	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_77126175_77126529_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
transcript_45068.nnic	chr18	+	2109	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26831	0	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_1	376.676732685662	114	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTATGTAGCATTTATGCT	6254	False	NA	19	True	ATTAAA	-31	NA	77126072	77234633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_77126175_77126529_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
transcript_45073.nnic	chr18	+	2674	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26735	0	at_least_one_novel_splicesite	FALSE	canonical	3	706	junction_12	216.509206932155	165	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTTTCTAATTAAAGATG	6350	False	NA	13	True	AATAAA	-26	NA	77126168	77240813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
transcript_45075.nnic	chr18	+	3059	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26735	166	at_least_one_novel_splicesite	FALSE	canonical	3	706	junction_12	216.509206932155	315	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTTGTAGAATTTTCTG	6350	False	NA	44	True	TATAAA	-27	NA	77126168	77241198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
transcript_45082.known	chr18	+	3060	14	FSM	ENSMUSG00000025423.17	ENSMUST00000114777.10	3060	14	0	0	0	0	multi-exon	FALSE	canonical	3	372	junction_1	299.077338556217	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATCATAATTCTCATCAAT	7899	False	NA	NA	False	CATAAA	-17	NA	77152903	77241496	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_77153116_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
transcript_45086.known	chr18	+	2254	14	FSM	ENSMUSG00000025423.17	ENSMUST00000168882.9	2254	14	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	369.279756365738	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTTTCTAATTAAAGATG	8510	False	NA	13	True	AATAAA	-26	NA	77153514	77240813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_77153604_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
transcript_45087.nnic	chr18	+	2232	13	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26735	-136	at_least_one_novel_splicesite	FALSE	canonical	3	417	junction_12	260.606810582959	259	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGATTGGAAAAGAGCTTGA	6350	False	NA	7	True	AATAAA	-17	NA	77126168	77234497	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
transcript_45088.nnic	chr18	+	2368	13	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26735	0	at_least_one_novel_splicesite	FALSE	canonical	3	417	junction_12	260.606810582959	269	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTATGTAGCATTTATGCT	6350	False	NA	19	True	ATTAAA	-31	NA	77126168	77234633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
transcript_451.known	SIRV5	-	229	1	FSM	SIRV5B	SIRV512	229	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	829	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAACATGTTAGACCTTTA	NA	False	NA	NA	False	AATATA	-23	NA	2406	2177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV5_-_2200_2400
transcript_45116.known	chr18	+	1989	7	FSM	ENSMUSG00000025425.19	ENSMUST00000079618.11	1989	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.74535599249993	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCAGAATCTTGTTAAACT	NA	False	NA	NA	False	TATAAA	-29	NA	77273548	77343146	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_77273922_77320488_77320582_77329799_77329887_77333762_77333908_77336132_77336246_77340712_77340806_77342061
transcript_45119.known	chr18	-	1606	5	FSM	ENSMUSG00000047466.11	ENSMUST00000237203.2	1606	5	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_4	65.6291665343999	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAACTTAGCACAGAGA	NA	False	NA	-7	True	ATTAAA	-15	NA	77802186	77722682	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_77723025_77730763_77730891_77740824_77740993_77761595_77762381_77802002
transcript_45125.nnic	chr18	-	1076	2	NNC	ENSMUSG00000097666.3	novel	1269	2	NA	NA	-153	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGATTCTTCTTTATTTTG	NA	False	NA	NA	False	NA	NA	NA	77820592	77817191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_-_77818179_77820503
transcript_45126.known	chr18	-	1269	2	FSM	ENSMUSG00000097666.3	ENSMUST00000180530.3	1269	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACTGGATTCTTCTTTAT	NA	False	NA	NA	False	NA	NA	NA	77820439	77817195	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_77818179_77820153
transcript_4513.known	chr1	-	1133	5	FSM	ENSMUSG00000014980.15	ENSMUST00000015124.15	1133	5	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_4	96.4219243740758	4055	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTCGTAATCATCCATCA	NA	False	NA	-5	True	AATAAA	-29	NA	152262433	152246485	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_152247035_152247504_152247647_152259012_152259149_152259449_152259532_152262209
transcript_45156.known	chr18	+	2471	12	FSM	ENSMUSG00000025428.16	ENSMUST00000026495.15	2471	12	0	0	0	0	multi-exon	FALSE	canonical	3	5078	junction_4	224.265707226978	27540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTTGGTTGATGAGTC	NA	False	NA	20	True	ATTAAA	-22	NA	77861428	77870569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
transcript_45157.known	chr18	-	1003	9	FSM	ENSMUSG00000041840.9	ENSMUST00000048192.9	1003	9	0	0	0	0	multi-exon	FALSE	canonical	3	1190	junction_6	88.5180066427165	5726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTTGTTATCTGTTGCT	NA	False	NA	-1	True	AATACA	-19	NA	77855480	77845267	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_77845454_77846169_77846218_77847136_77847209_77848167_77848234_77848606_77848731_77849681_77849817_77851772_77851909_77854563_77854739_77855419
transcript_45158.known	chr18	-	1226	10	FSM	ENSMUSG00000041840.9	ENSMUST00000236234.2	1226	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	557.188732792236	619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTGTTATCTGTTGCTC	NA	False	NA	0	True	AATACA	-20	NA	77861586	77845266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_77845454_77846169_77846218_77847136_77847209_77848167_77848234_77848606_77848731_77849681_77849817_77851772_77851909_77854563_77854739_77856043_77856198_77861457
transcript_45159.known	chr18	+	774	5	FSM	ENSMUSG00000025428.16	ENSMUST00000135678.2	774	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	2433.22053819624	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAAGTTAGTTTTGTAAGA	NA	False	NA	NA	False	TTTAAA	-22	NA	77861691	77870355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_77861811_77863476_77863556_77865218_77865312_77869521_77869650_77870000
transcript_45161.nic	chr18	+	3011	15	NIC	ENSMUSG00000025429.10	novel	1056	14	NA	NA	1	878	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	7.97860659923186	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAATTTGTATTCTTGTGT	2211	False	NA	NA	False	AATAAA	-20	NA	77877614	77971457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr18_+_77877687_77922824_77922926_77934078_77934157_77935803_77935839_77942497_77942605_77949546_77949610_77958046_77958146_77959267_77959314_77959468_77959549_77961060_77961160_77961972_77962070_77963537_77963620_77965294_77965330_77967055_77967117_77969501
transcript_45164.nic	chr18	+	2680	9	ISM	ENSMUSG00000025429.10	ENSMUST00000114741.4	2267	15	75677	-878	75677	878	3prime_fragment	FALSE	canonical	3	30	junction_2	5.23061898822692	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAATTTGTATTCTTGTGT	9070	False	NA	NA	False	AATAAA	-20	NA	77957921	77971457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_+_77958146_77959267_77959314_77959468_77959549_77961060_77961160_77961972_77962070_77963537_77963620_77965294_77965330_77967055_77967117_77969501
transcript_45165.nnic	chr18	+	1041	9	NNC	ENSMUSG00000025429.10	novel	1056	14	NA	NA	75677	875	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_8	11.9895788082818	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTTAATTTGTATTCTTG	9070	False	NA	NA	False	AATAAA	-17	NA	77957921	77971454	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_77958146_77959267_77959314_77959468_77959549_77961060_77961160_77961972_77962070_77963537_77963620_77965294_77965330_77967055_77967117_77971137
transcript_45166.nnic	chr18	+	1019	5	NNC	ENSMUSG00000025429.10	novel	2267	15	NA	NA	3	-83844	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9.44391338376205	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAGTAGAGTGATTATTTT	2213	False	NA	NA	False	AAAAAG	-20	NA	77877616	77883272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_77877687_77881229_77881341_77882004_77882171_77882305_77882451_77882745
transcript_45173.known	chr18	+	9660	44	FSM	ENSMUSG00000039840.9	ENSMUST00000044622.7	9660	44	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_24	5.20286146671814	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATGAATCCGAATTGAAG	NA	False	NA	NA	False	AATAAA	-19	NA	77981679	78078228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_77981775_77991364_77992298_77994363_77994608_77997375_77997513_77997947_77998056_77999121_77999196_78000621_78000728_78002244_78002360_78002694_78002846_78003921_78004078_78005595_78005754_78008115_78008271_78011751_78011893_78015709_78015875_78018193_78018314_78019051_78019309_78022338_78022480_78024155_78024301_78024512_78024711_78025522_78025634_78026685_78026806_78028255_78028423_78029600_78029823_78031478_78031603_78034560_78034706_78038726_78038899_78040421_78040585_78052784_78052928_78054048_78054206_78055915_78056111_78057205_78057420_78057953_78058103_78058893_78059096_78060866_78060940_78062429_78062537_78063952_78064129_78065865_78066052_78066491_78066702_78067140_78067286_78070471_78070715_78071977_78072195_78073183_78073400_78073555_78073671_78076139
transcript_45176.known	chr18	-	225	2	FSM	ENSMUSG00000117709.2	ENSMUST00000237884.2	225	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGTGGCTGACCCTTAGAG	NA	False	NA	NA	False	NA	NA	NA	79744472	79743500	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_79743645_79744391
transcript_45177.known	chr18	-	5012	4	FSM	ENSMUSG00000053950.11	ENSMUST00000066743.11	5012	4	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_3	18.0800688297608	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTCTTAAGTCAAGCAGG	5936	False	NA	87	True	AATAAA	-29	NA	80194697	80169525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_80174210_80180698_80180789_80185863_80185985_80194580
transcript_45178.known	chr18	-	1377	6	FSM	ENSMUSG00000024570.8	ENSMUST00000025462.7	1377	6	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_3	30.0026665481587	473	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTTTGTGTATACGCAC	NA	False	NA	-3	True	AATAAA	-20	NA	80243873	80235479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_80236098_80236446_80236515_80238233_80238319_80240464_80240578_80240878_80241099_80243600
transcript_45188.known	chr18	+	1755	4	FSM	ENSMUSG00000024571.16	ENSMUST00000127234.8	1755	4	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_1	451.424658411813	681	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTGTGGGAATTCATTG	NA	False	NA	NA	False	AATAAA	-21	NA	80250109	80255956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_80250277_80250368_80250559_80253276_80253346_80254627
transcript_45189.known	chr18	+	517	4	FSM	ENSMUSG00000057130.13	ENSMUST00000025464.8	517	4	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_1	1036.43309265748	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGCACTGGCAACAACAACA	NA	False	NA	NA	False	NA	NA	NA	80250077	80265417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_80250277_80250368_80250559_80261918_80262023_80265393
transcript_452.known	SIRV5	+	2473	1	FSM	SIRV5A	SIRV504	2473	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1647	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	11133	13606	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV5_+_11100_13600
transcript_45201.known	chr18	+	4078	4	FSM	ENSMUSG00000057130.13	ENSMUST00000145963.9	4078	4	0	0	0	0	multi-exon	FALSE	canonical	3	2407	junction_2	310.116465577406	9369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTGGTCATGATGTTTT	NA	False	NA	7	True	NA	NA	NA	80250009	80269070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_80250117_80250368_80250559_80261918_80262023_80265393
transcript_45202.known	chr18	+	1683	4	FSM	ENSMUSG00000024571.16	ENSMUST00000125127.8	1683	4	0	0	0	0	multi-exon	FALSE	canonical	3	1096	junction_3	900.996608699993	4017	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTACACGTTTGTTGTGGG	NA	False	NA	NA	False	AATAAA	-12	NA	80250012	80255947	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_80250117_80250368_80250559_80253276_80253346_80254627
transcript_45203.known	chr18	+	1650	4	FSM	ENSMUSG00000024571.16	ENSMUST00000025463.14	1650	4	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	503.796475661441	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAAAAGGAGTACACGTT	NA	False	NA	NA	False	AATAAA	-3	NA	80250081	80255938	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_80250162_80250368_80250559_80253276_80253346_80254627
transcript_45205.known	chr18	-	1104	4	FSM	ENSMUSG00000078963.4	ENSMUST00000237192.2	1104	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	16.9901932498329	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAACCTTATGTGTATG	NA	False	NA	NA	False	AATACA	-14	NA	80280048	80272972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_80273777_80276629_80276725_80278663_80278731_80279910
transcript_4521.known	chr1	+	1914	4	FSM	ENSMUSG00000008475.14	ENSMUST00000077755.11	1914	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	649.932817040859	2630	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTGTAACTCTCCAGTTA	NA	False	NA	100	True	AATAAA	-35	NA	152642292	152651348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_152642619_152644611_152644685_152647114_152647292_152650010
transcript_45217.known	chr18	+	1989	6	FSM	ENSMUSG00000034006.18	ENSMUST00000091798.10	1989	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	14.1279864099595	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGGTGTAAGTAAGTCAG	NA	False	NA	14	True	AATAAA	-14	NA	80299520	80335939	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_80299619_80299996_80300334_80306634_80306769_80315676_80315731_80326490_80326708_80334790
transcript_45219.known	chr18	+	2004	5	FSM	ENSMUSG00000034006.18	ENSMUST00000123750.8	2004	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	16.6132477258361	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGTGTAAGTAAGTCAGT	NA	False	NA	15	True	AATAAA	-15	NA	80298459	80335940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_80298626_80299996_80300334_80306634_80306769_80326490_80326708_80334790
transcript_4522.known	chr1	+	1737	3	FSM	ENSMUSG00000008475.14	ENSMUST00000097536.6	1737	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	15	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTGTAACTCTCCAGTTA	NA	False	NA	100	True	AATAAA	-35	NA	152642292	152651348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_152642619_152644611_152644685_152650010
transcript_45220.known	chr18	+	1864	5	FSM	ENSMUSG00000034006.18	ENSMUST00000129043.8	1864	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	11.0989864402116	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGCTTCATGTGGTGTAAG	NA	False	NA	6	True	AATAAA	-39	NA	80299498	80335931	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_80299534_80299996_80300334_80306634_80306769_80326490_80326708_80334790
transcript_45222.known	chr18	+	1911	5	FSM	ENSMUSG00000034006.18	ENSMUST00000070135.8	1911	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	7.26291952316697	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACATGCTTCATGTGGTG	NA	False	NA	2	True	AATAAA	-35	NA	80299532	80335927	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_80299619_80299996_80300334_80306634_80306769_80326490_80326708_80334790
transcript_45226.nic	chr18	+	771	2	ISM	ENSMUSG00000034006.18	ENSMUST00000151677.9	3192	4	-33	17663	-29	-5997	5prime_fragment	FALSE	canonical	3	16	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAGGCTCCCTTGACTTGC	NA	False	NA	NA	False	AATAAA	-15	NA	80299469	80300703	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_+_80299534_80299996
transcript_45227.nic	chr18	+	855	2	ISM	ENSMUSG00000034006.18	ENSMUST00000134545.3	3258	4	-51	17663	-28	-5997	5prime_fragment	FALSE	canonical	3	39	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAGGCTCCCTTGACTTGC	NA	False	NA	NA	False	AATAAA	-15	NA	80299470	80300703	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_+_80299619_80299996
transcript_4523.known	chr1	+	2596	15	FSM	ENSMUSG00000026480.13	ENSMUST00000027754.7	2596	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	6.91382820210072	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCTGCTTGGAGAGAACAC	559	False	NA	NA	False	AATAAA	-14	NA	152683640	152712741	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_152683957_152686668_152686752_152692741_152692851_152697266_152697402_152699967_152700076_152701632_152701693_152703168_152703213_152706102_152706245_152706443_152706513_152707364_152707441_152709073_152709097_152709527_152709680_152709819_152709932_152710777_152710956_152711752
transcript_45231.nnic	chr18	-	1030	4	Intergenic	novelGene_67	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTAGGTAGCTAGGAGTAG	NA	False	NA	NA	False	NA	NA	NA	82266504	82257611	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr18_-_82257734_82259456_82259616_82265077_82265124_82265801
transcript_45235.known	chr18	+	2056	6	FSM	ENSMUSG00000041607.18	ENSMUST00000142850.9	2056	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	2.71293199325011	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTGCCCAGGTGTCTCA	7815	False	NA	17	True	AATAAA	-18	NA	82572633	82603756	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_82572876_82590949_82591052_82593296_82593333_82593725_82593759_82597060_82597184_82602236
transcript_45236.known	chr18	+	2070	6	FSM	ENSMUSG00000041607.18	ENSMUST00000153478.9	2070	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.71293199325011	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAGGTGTCTCATTTTGC	7852	False	NA	23	True	AATAAA	-24	NA	82572670	82603762	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_82572876_82579902_82579981_82590949_82591052_82593296_82593333_82597060_82597184_82602236
transcript_45237.known	chr18	+	1947	5	FSM	ENSMUSG00000041607.18	ENSMUST00000132369.3	1947	5	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	0.866025403784439	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGATCTTTGCCCAGGTG	7886	False	NA	12	True	AATAAA	-13	NA	82572704	82603751	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_82572876_82590949_82591052_82593296_82593333_82597060_82597184_82602236
transcript_45238.known	chr18	+	432	5	FSM	ENSMUSG00000041607.18	ENSMUST00000114674.11	432	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.34520787991171	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCCTCCCCGCTCAGCCT	7886	False	NA	NA	False	NA	NA	NA	82572704	82602281	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_82572876_82579902_82579981_82590949_82591052_82593296_82593333_82602236
transcript_45240.known	chr18	+	4797	4	FSM	ENSMUSG00000041607.18	ENSMUST00000091789.11	4797	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	4.02768199119819	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGGACTTTTTAAGTTGT	NA	False	NA	35	True	ATTAAA	-35	NA	82493270	82576828	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_82493520_82518851_82518928_82540174_82540263_82572444
transcript_45242.known	chr18	+	354	4	FSM	ENSMUSG00000041607.18	ENSMUST00000075372.13	354	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	2.05480466765633	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCCTCCCCGCTCAGCCT	7886	False	NA	NA	False	NA	NA	NA	82572704	82602281	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_82572876_82590949_82591052_82593296_82593333_82602236
transcript_45245.known	chr18	-	483	1	FSM	ENSMUSG00000061684.7	ENSMUST00000130005.3	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	184	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTACACAAAGAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	82542146	82541663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_82541700_82542100
transcript_45249.nnic	chr18	-	390	3	Antisense	novelGene_ENSMUSG00000097738.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	4	junction_2	12.5	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTCTTCCTATATTTTC	NA	False	NA	-14	True	AATAAA	-17	NA	82884008	82873436	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr18_-_82873610_82875076_82875173_82883887
transcript_45251.nnic	chr18	-	449	3	Antisense	novelGene_ENSMUSG00000097738.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	20	junction_2	4.5	163	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTCTTCCTATATTTTC	NA	False	NA	-14	True	AATAAA	-17	NA	82884038	82873436	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr18_-_82873610_82875076_82875202_82883887
transcript_45256.nnic	chr18	+	3959	5	NNC	ENSMUSG00000058881.14	novel	924	3	NA	NA	-15070	1777	at_least_one_novel_splicesite	FALSE	canonical	3	187	junction_2	10.2713192920871	57	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGAAGGTGTCGTCTGTGT	NA	False	NA	14	True	ATTAAA	-21	NA	82990862	83021602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_82990974_83004868_83006324_83011194_83011315_83012594_83012663_83019397
transcript_45259.nnic	chr18	+	1021	5	NNC	ENSMUSG00000117783.2	novel	937	6	NA	NA	3386	264	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	3.57071421427143	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTTCCTATATTTAATT	NA	False	NA	NA	False	ATTAAA	-18	NA	83377095	83386534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_83377264_83381662_83381799_83385018_83385238_83385879_83385988_83386144
transcript_45262.nnic	chr18	+	1123	5	NNC	ENSMUSG00000117783.2	novel	937	6	NA	NA	3386	264	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	3.89711431702997	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTTCCTATATTTAATT	NA	False	NA	NA	False	ATTAAA	-18	NA	83377095	83386534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr18_+_83377264_83381662_83381901_83385018_83385238_83385879_83385988_83386144
transcript_45264.known	chr18	+	3430	2	FSM	ENSMUSG00000049090.4	ENSMUST00000060223.4	3430	2	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	0	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACACTTCTTTCTGTCCC	4254	False	NA	NA	False	NA	NA	NA	84106187	84115653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_84106499_84112534
transcript_45267.known	chr18	-	7909	9	FSM	ENSMUSG00000048410.18	ENSMUST00000125763.3	7909	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	5.699506557589	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGTGGTGTACTAAGTGC	NA	False	NA	NA	False	AATAAA	-20	NA	84607629	84225825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_84228207_84333930_84334110_84361070_84361192_84369024_84369109_84372649_84372817_84450484_84450560_84570994_84571110_84576451_84581172_84607562
transcript_45269.known	chr18	-	2124	12	FSM	ENSMUSG00000024644.18	ENSMUST00000025546.17	2124	12	0	0	0	0	multi-exon	FALSE	canonical	3	418	junction_11	64.2627612178223	2369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCGTGGTCTGACTTTCT	NA	False	NA	2	True	AATAAA	-25	NA	84703827	84685589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_84686226_84686662_84686811_84687055_84687198_84687921_84688087_84688877_84689039_84690198_84690284_84693101_84693303_84695443_84695533_84696832_84696996_84699059_84699204_84699962_84700053_84703727
transcript_4527.nic	chr1	-	1586	8	ISM	ENSMUSG00000042772.16	ENSMUST00000111836.4	3928	23	-117	19492	-117	-12436	5prime_fragment	FALSE	canonical	3	249	junction_7	20.4869296312133	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAGCAGCAGCAGCAAG	NA	False	NA	NA	False	NA	NA	NA	152778514	152734112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_152734766_152735102_152735254_152736200_152736273_152737431_152737604_152742331_152742465_152744002_152744121_152746510_152746543_152778259
transcript_45270.known	chr18	-	2152	11	FSM	ENSMUSG00000024644.18	ENSMUST00000168419.3	2152	11	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_9	38.6638073655454	1273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACTGCCGTGGTCTGACT	NA	False	NA	-2	True	AATAAA	-21	NA	84700184	84685593	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_84686226_84686662_84686811_84687055_84687198_84687921_84688087_84688877_84689039_84690198_84690284_84693101_84693303_84695443_84695533_84696832_84696996_84699059_84699204_84699962
transcript_45288.known	chr18	+	676	5	FSM	ENSMUSG00000024646.15	ENSMUST00000163083.2	676	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	445.209150287817	607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACCATATGTGTCTGTCT	NA	False	NA	10	True	AATATA	-15	NA	84870003	84897987	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_84870126_84889629_84889759_84891264_84891295_84895951_84895987_84897627
transcript_45290.known	chr18	+	833	5	FSM	ENSMUSG00000024646.15	ENSMUST00000160180.9	833	5	0	0	0	0	multi-exon	FALSE	canonical	3	946	junction_4	54.2425110038243	9740	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTGTCTGTTTGGTGT	NA	False	NA	19	True	AATATA	-24	NA	84869462	84897996	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_84869733_84889629_84889759_84891264_84891295_84895951_84895987_84897627
transcript_45291.known	chr18	+	1001	6	FSM	ENSMUSG00000024646.15	ENSMUST00000236742.2	1001	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	502.017370217406	722	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATATGTGTCTGTCTGTT	NA	False	NA	13	True	AATATA	-18	NA	84869538	84897990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_84869733_84887591_84887842_84889629_84889759_84891264_84891295_84895951_84895987_84897627
transcript_45292.known	chr18	+	1182	6	FSM	ENSMUSG00000024646.15	ENSMUST00000235725.2	1182	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	500.801996801131	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATACCATATGTGTCTGTC	5046	False	NA	9	True	AATATA	-14	NA	84856828	84897986	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_84857412_84858293_84858340_84889629_84889759_84891264_84891295_84895951_84895987_84897627
transcript_453.known	SIRV5	+	885	4	FSM	SIRV5A	SIRV509	885	4	0	0	0	0	multi-exon	FALSE	canonical	3	1024	junction_3	4608.45413946538	8591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATAGTAACCTTGGTAAC	NA	False	NA	NA	False	AGTAAA	-10	NA	8315	11866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV5_+_8382_8454_8586_10858_10992_11311
transcript_45300.known	chr18	+	1557	10	FSM	ENSMUSG00000034391.13	ENSMUST00000223789.3	1557	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	268.357187805569	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTGAGTTAGCAGTAGGG	NA	False	NA	-12	True	NA	NA	NA	84970240	84999501	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_84970384_84975444_84975556_84976396_84976502_84977193_84977437_84978134_84978345_84980718_84980846_84982233_84982317_84983555_84983711_84995491_84995617_84999246
transcript_45304.known	chr18	+	651	2	FSM	ENSMUSG00000034391.13	ENSMUST00000224427.2	651	2	0	0	0	0	multi-exon	FALSE	canonical	3	754	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAACCCAAAA	NA	False	NA	NA	False	NA	NA	NA	84977362	84978711	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_84977437_84978134
transcript_45305.known	chr18	+	1866	1	FSM	ENSMUSG00000069324.7	ENSMUST00000091776.7	1866	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	AATAAA	-22	NA	87774409	87776275	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_87774400_87776300
transcript_45306.known	chr18	-	1004	4	FSM	ENSMUSG00000056153.16	ENSMUST00000145120.3	1004	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	77.821733611005	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCAGCCAGAGCCGCGCCC	NA	False	NA	NA	False	NA	NA	NA	88912434	88888373	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_88889043_88905115_88905177_88905332_88905458_88912285
transcript_45307.known	chr18	-	2814	4	FSM	ENSMUSG00000056153.16	ENSMUST00000125362.8	2814	4	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_2	64.5652125115891	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGAAATTGTTGCCTTTT	NA	False	NA	-5	True	ATTAAA	-25	NA	88912476	88886618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_88889043_88905115_88905190_88905332_88905458_88912285
transcript_45310.known	chr18	-	6036	3	FSM	ENSMUSG00000056153.16	ENSMUST00000070116.12	6036	3	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	76	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCCTTGTCATCAGTAAC	NA	False	NA	-2	True	AATAAA	-17	NA	88912446	88883292	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_88889043_88905332_88905458_88912285
transcript_45312.known	chr18	-	1323	1	FSM	ENSMUSG00000091697.3	ENSMUST00000163304.3	1323	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGGATTATAAAGAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	90330314	90328991	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_-_90329000_90330300
transcript_45313.known	chr18	+	4611	16	FSM	ENSMUSG00000024614.8	ENSMUST00000025515.7	4611	16	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_13	15.4033185457622	416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTACCTTTAATATGTGT	4742	False	NA	25	True	AATAAA	-25	NA	90528277	90561391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_90528502_90529402_90529458_90532328_90532369_90535517_90535642_90537228_90537275_90539080_90539162_90541653_90541754_90542404_90542483_90545999_90546067_90548183_90548283_90551106_90551165_90551344_90551399_90552505_90552563_90555198_90555329_90556622_90556692_90558062
transcript_45321.known	chr18	+	1776	11	FSM	ENSMUSG00000024614.8	ENSMUST00000236213.2	1776	11	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_10	65.2935678302235	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGACAACTATTGTTACCACA	4790	False	NA	NA	False	AATAAA	-22	NA	90528325	90550032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_90528502_90529402_90529458_90532328_90532369_90535517_90535642_90537228_90537275_90539080_90539162_90541653_90541754_90542404_90542483_90545999_90546067_90548183_90548283_90549122
transcript_45324.nic	chr18	+	1298	7	ISM	ENSMUSG00000024614.8	ENSMUST00000236213.2	1776	11	-55	7658	-7	5104	5prime_fragment	FALSE	canonical	3	190	junction_5	18.7053171287976	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTCCTCTTTCTGTTTGT	4735	False	NA	NA	False	AATAAA	-21	NA	90528270	90542374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_+_90528502_90529402_90529458_90532328_90532369_90535517_90535642_90537228_90537275_90539080_90539162_90541653
transcript_45325.nic	chr18	+	842	5	ISM	ENSMUSG00000024614.8	ENSMUST00000236213.2	1776	11	-55	12412	-7	350	5prime_fragment	FALSE	canonical	3	198	junction_4	16.6188898546203	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAATCAAGAGAAGAAAATT	4735	False	NA	NA	False	ATTAAA	-13	NA	90528270	90537620	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr18_+_90528502_90529402_90529458_90532328_90532369_90535517_90535642_90537228
transcript_45327.known	chr18	+	2003	4	FSM	ENSMUSG00000110277.3	ENSMUST00000211710.2	2003	4	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_2	1.63299316185545	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATAAGTGTTGTCTTGGTC	NA	False	NA	3	True	NA	NA	NA	90597900	90610646	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_90598024_90607079_90607207_90607397_90607459_90608954
transcript_45328.known	chr18	+	1929	3	FSM	ENSMUSG00000110277.3	ENSMUST00000209969.3	1929	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	46.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGTCTTGGTCATAGTA	NA	False	NA	9	True	NA	NA	NA	90597919	90610652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_90598024_90607079_90607207_90608954
transcript_45329.known	chr18	+	513	3	FSM	ENSMUSG00000110277.3	ENSMUST00000209821.2	513	3	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_2	2	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACAGATGGTTGTGAGCCA	NA	False	NA	NA	False	NA	NA	NA	90597948	90607708	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr18_+_90598024_90607079_90607207_90607397
transcript_45331.known	chr19	-	5569	15	FSM	ENSMUSG00000024831.15	ENSMUST00000025751.11	5569	15	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	8.84936294259626	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATAGCTGAGGAGTACTC	NA	False	NA	NA	False	NA	NA	NA	3333017	3309075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_3311636_3311974_3312145_3314810_3315666_3316335_3316460_3317241_3317337_3318297_3318417_3318659_3318843_3321525_3321701_3322887_3323036_3324355_3324557_3326755_3326920_3329532_3329631_3329806_3329997_3331418_3331589_3332700
transcript_45336.known	chr19	+	802	7	FSM	ENSMUSG00000024829.13	ENSMUST00000025743.7	802	7	0	0	0	0	multi-exon	FALSE	canonical	3	1715	junction_6	72.3058703625708	10310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGACTTGCTGTTAAA	7371	False	NA	13	True	NA	NA	NA	3333059	3341201	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_3333172_3334759_3334818_3335309_3335396_3336874_3337039_3337702_3337756_3338983_3339088_3340976
transcript_45338.known	chr19	+	674	6	FSM	ENSMUSG00000024829.13	ENSMUST00000139844.8	674	6	0	0	0	0	multi-exon	FALSE	canonical	3	1812	junction_5	40.5935955539787	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATTGTGCCAGCATTGTG	7366	False	NA	NA	False	NA	NA	NA	3333054	3339179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_3333172_3334759_3334818_3335309_3335396_3336874_3337039_3337702_3337756_3338983
transcript_45347.known	chr19	+	678	2	FSM	ENSMUSG00000024829.13	ENSMUST00000155870.2	678	2	0	0	0	0	multi-exon	FALSE	canonical	3	1903	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTGAGCTCACCACCCTG	7371	False	NA	NA	False	NA	NA	NA	3333059	3335325	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_3333172_3334759
transcript_45348.known	chr19	+	4317	19	FSM	ENSMUSG00000024900.6	ENSMUST00000025835.6	4317	19	0	0	0	0	multi-exon	TRUE	canonical	3	230	junction_1	37.3718386086055	742	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCATCTGTCCCTGTCTCC	NA	False	NA	18	True	AATAAA	-20	NA	3373284	3435733	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_3373375_3399188_3399343_3402484_3402625_3406316_3406489_3408175_3408278_3412084_3412223_3414477_3414556_3415674_3415783_3416329_3416418_3418854_3419051_3420706_3420896_3421571_3421678_3425092_3425210_3426410_3426576_3428367_3428503_3430016_3430170_3431609_3431724_3431931_3432025_3433754
transcript_45349.nnic	chr19	-	1015	7	NNC	ENSMUSG00000024907.8	novel	788	6	NA	NA	-337	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1.97202659436654	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGACTGTTTGGTTCTTCT	NA	False	NA	NA	False	AATAAA	-15	NA	3464881	3459914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_3460166_3461128_3461207_3461557_3461648_3463294_3463350_3464031_3464113_3464311_3464544_3464653
transcript_45350.known	chr19	-	788	6	FSM	ENSMUSG00000024907.8	ENSMUST00000237521.2	788	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.72046505340853	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGACTGTTTGGTTCTTCT	NA	False	NA	NA	False	AATAAA	-15	NA	3464544	3459914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_3460166_3461128_3461207_3461557_3461648_3463294_3463350_3464031_3464113_3464311
transcript_45353.known	chr19	-	4952	24	FSM	ENSMUSG00000024908.16	ENSMUST00000113997.9	4952	24	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_9	67.9031613363524	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACTTCCTCGTGAGCCT	NA	False	NA	NA	False	AATAAA	-19	NA	3625749	3504932	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523867_3528277_3528365_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3594107_3594256_3625640
transcript_45355.known	chr19	-	4841	23	FSM	ENSMUSG00000024908.16	ENSMUST00000025846.16	4841	23	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_9	88.0225482945391	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTCGTGAGCCTTTTTG	NA	False	NA	NA	False	AATAAA	-24	NA	3625720	3504927	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523867_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3594107_3594256_3625640
transcript_45357.nic	chr19	-	1998	7	ISM	ENSMUSG00000024908.16	ENSMUST00000113997.9	4952	24	-21	56013	-21	549	5prime_fragment	FALSE	canonical	3	325	junction_6	70.1492456599974	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTGGTTTGGTTTGGG	NA	False	NA	NA	False	NA	NA	NA	3625770	3560945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_-_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3594107_3594256_3625640
transcript_45358.nic	chr19	-	1846	6	ISM	ENSMUSG00000024908.16	ENSMUST00000223919.2	2237	14	-29	33170	-17	549	5prime_fragment	FALSE	canonical	3	145	junction_5	129.618825793169	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTGGTTTGGTTTGGG	NA	False	NA	NA	False	NA	NA	NA	3625766	3560945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_-_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3625640
transcript_45359.known	chr19	-	2237	14	FSM	ENSMUSG00000024908.16	ENSMUST00000223919.2	2237	14	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_13	95.2764895840292	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGATCAGTA	NA	False	NA	NA	False	NA	NA	NA	3625737	3527775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_3528365_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3625640
transcript_45360.nic	chr19	-	934	4	ISM	ENSMUSG00000024913.17	ENSMUST00000177294.2	2835	14	23942	-5	23942	0	3prime_fragment	TRUE	canonical	3	98	junction_2	9.84321537348893	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCTGCCATTCCTTTGTG	NA	False	NA	-3	True	TATAAA	-17	NA	3641850	3634830	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_-_3635292_3636382_3636481_3640973_3641114_3641615
transcript_45363.known	chr19	-	571	3	FSM	ENSMUSG00000118249.2	ENSMUST00000236650.2	571	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGGACTTTGGTGGTATC	NA	False	NA	NA	False	NA	NA	NA	3758176	3739685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_3740001_3756645_3756786_3758060
transcript_45365.known	chr19	+	1882	4	FSM	ENSMUSG00000035372.3	ENSMUST00000039048.2	1882	4	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_1	53.9897109539298	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTGTGTGGGTCTGTGTG	NA	False	NA	11	True	ATTAAA	-23	NA	3758332	3767881	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_3758437_3764403_3764626_3765637_3765803_3766490
transcript_45366.known	chr19	+	2193	4	FSM	ENSMUSG00000035372.3	ENSMUST00000237955.2	2193	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	122.806984962402	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTCCAGCTTGTGTGGG	NA	False	NA	3	True	ATTAAA	-15	NA	3758370	3767873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_3758437_3764046_3764626_3765637_3765803_3766490
transcript_45368.known	chr19	+	1643	3	FSM	ENSMUSG00000035372.3	ENSMUST00000235295.2	1643	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	146.5	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGCTTGTGTGGGTCTGT	NA	False	NA	8	True	ATTAAA	-20	NA	3758346	3767878	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_3758437_3765637_3765803_3766490
transcript_45370.known	chr19	-	382	2	FSM	ENSMUSG00000117739.2	ENSMUST00000237981.2	382	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTCTCATCCTGTGCATC	NA	False	NA	NA	False	NA	NA	NA	3769573	3763043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_3763372_3769519
transcript_45377.known	chr19	+	2975	10	FSM	ENSMUSG00000045098.20	ENSMUST00000113970.8	2975	10	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_9	36.6093828625975	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTTTCTTGAGTCTGG	NA	False	NA	56	True	AATAAA	-15	NA	3818032	3858835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_3818341_3836388_3836628_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394_3854562_3854813_3854834_3854916_3855054_3857224
transcript_45379.known	chr19	+	1721	10	FSM	ENSMUSG00000045098.20	ENSMUST00000237440.2	1721	10	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	94.5832966226067	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTTTAGAATTGACCAAA	NA	False	NA	4	True	AATAAA	-14	NA	3818145	3855463	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_3818341_3832219_3832280_3836388_3836628_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394_3854562_3854813_3854834_3854916
transcript_45381.known	chr19	+	1283	9	FSM	ENSMUSG00000045098.20	ENSMUST00000005518.16	1283	9	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_4	20.1242235875077	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATCAGACTCTCTGCCTA	NA	False	NA	NA	False	NA	NA	NA	3818117	3855057	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_3818341_3836388_3836628_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394_3854562_3854813_3854834_3854916
transcript_45385.known	chr19	-	2688	20	FSM	ENSMUSG00000001750.17	ENSMUST00000001801.11	2688	20	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_12	8.58007741992203	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTCTCTGTCCTCTCTG	NA	False	NA	0	True	AATAAA	-20	NA	3957133	3946049	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_3946193_3946269_3946448_3946603_3946722_3946794_3946903_3947037_3947170_3947467_3947682_3947757_3947877_3948547_3948639_3948717_3948876_3948979_3949120_3951890_3952036_3952343_3952557_3952630_3952725_3952881_3952965_3953045_3953173_3953339_3953429_3953508_3953730_3954216_3954296_3954584_3954706_3957018
transcript_45389.known	chr19	-	1005	7	FSM	ENSMUSG00000059734.8	ENSMUST00000236801.2	1005	7	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_6	705.446824517782	3702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTGTGTTGTTCCATTT	NA	False	NA	-1	True	CATAAA	-22	NA	3962488	3958862	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961565_3961617_3961688_3961747_3962202
transcript_45392.known	chr19	-	780	7	FSM	ENSMUSG00000059734.8	ENSMUST00000237341.2	780	7	0	0	0	0	multi-exon	FALSE	canonical	3	1174	junction_6	307.096076171611	12197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTACCTGTTGTGTTGTTCC	NA	False	NA	-5	True	CATAAA	-18	NA	3962774	3958866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961565_3961617_3961688_3961747_3962709
transcript_45393.known	chr19	-	977	7	FSM	ENSMUSG00000059734.8	ENSMUST00000235847.2	977	7	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_6	709.089557108268	2586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTACCTGTTGTGTTGT	NA	False	NA	-8	True	CATAAA	-15	NA	3962734	3958869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961565_3961617_3961688_3961747_3962469
transcript_45394.known	chr19	-	1924	10	FSM	ENSMUSG00000024885.10	ENSMUST00000051803.8	1924	10	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_9	3.58322566591047	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACAGGTGTCTTGTCTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	3979808	3963490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_3964085_3965293_3965394_3968041_3968209_3968602_3968990_3970796_3970879_3971182_3971269_3971472_3971594_3971696_3971808_3973738_3973902_3979695
transcript_45395.nnic	chr19	-	1967	10	NNC	ENSMUSG00000024885.10	novel	1924	10	NA	NA	-1063	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_7	2.58198889747161	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACAGGTGTCTTGTCTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	3980871	3963490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_3964085_3965293_3965394_3968041_3968209_3968602_3968990_3970796_3970879_3971182_3971269_3971472_3971594_3971696_3971808_3973738_3973902_3980715
transcript_45397.known	chr19	+	2266	11	FSM	ENSMUSG00000036908.18	ENSMUST00000162708.7	2266	11	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_5	6.90579466824782	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGTGTAGGTTGTGTTCT	5185	False	NA	NA	False	AATAAA	-20	NA	3985185	3999340	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_3985353_3985761_3985904_3986268_3986423_3991519_3991682_3991884_3992018_3992348_3992443_3992693_3992819_3993528_3993712_3994022_3994297_3997006_3997126_3998627
transcript_45401.known	chr19	+	2142	10	FSM	ENSMUSG00000075296.6	ENSMUST00000143380.3	2142	10	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_3	1.85259244450367	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAATTCAGGGAGAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	4022327	4031646	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4022614_4027498_4027662_4028060_4028172_4028413_4028535_4028652_4028739_4028850_4028933_4029229_4029617_4030005_4030173_4030691_4030792_4031007
transcript_45402.nnic	chr19	+	1560	8	NNC	ENSMUSG00000024866.11	novel	1505	6	NA	NA	-1556	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	14.2799988566855	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACAGTTCTTGTTCTTTG	NA	False	NA	5	True	TATAAA	-19	NA	4035013	4040007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_4035335_4036827_4036952_4037050_4037306_4037730_4037924_4038137_4038232_4038397_4038506_4038605_4038716_4039652
transcript_45403.known	chr19	+	1284	8	FSM	ENSMUSG00000024866.11	ENSMUST00000236510.2	1284	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	10.3332236114429	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGACAGTTCTTGTTCTT	NA	False	NA	3	True	TATAAA	-17	NA	4036569	4040005	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4036612_4036822_4036952_4037050_4037306_4037730_4037924_4038137_4038232_4038397_4038506_4038605_4038716_4039652
transcript_45406.known	chr19	+	1142	7	FSM	ENSMUSG00000024866.11	ENSMUST00000235612.2	1142	7	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_1	13.4752860204648	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGACAGTTCTTGTTCTT	NA	False	NA	3	True	TATAAA	-17	NA	4036582	4040005	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4036612_4037050_4037306_4037730_4037924_4038137_4038232_4038397_4038506_4038605_4038716_4039652
transcript_45410.known	chr19	+	708	5	FSM	ENSMUSG00000024866.11	ENSMUST00000236224.2	708	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	9.98436277385793	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGCTGACGGGTGGGAAG	NA	False	NA	NA	False	NA	NA	NA	4036569	4038231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4036612_4036827_4036952_4037050_4037306_4037730_4037924_4038137
transcript_45411.known	chr19	-	995	1	FSM	ENSMUSG00000118132.2	ENSMUST00000235840.2	995	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGGGAGTTCCTGTGGA	8920	False	NA	NA	False	TATAAA	-17	NA	4050542	4049547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4049500_4050500
transcript_45412.nnic	chr19	+	850	3	NIC	ENSMUSG00000110949.2	novel	787	4	NA	NA	-196	0	combination_of_known_splicesites	FALSE	canonical	3	5	junction_1	39.5	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGGCATCTTCCGTGT	3317	False	NA	9	True	ATTAAA	-18	NA	4050383	4052103	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_+_4050848_4051627_4051706_4051795
transcript_45414.known	chr19	+	787	4	FSM	ENSMUSG00000110949.2	ENSMUST00000025802.10	787	4	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	10.4243305140746	535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGGCATCTTCCGTGT	3513	False	NA	9	True	ATTAAA	-18	NA	4050579	4052103	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4050848_4051195_4051329_4051627_4051706_4051795
transcript_45415.known	chr19	+	1082	3	FSM	ENSMUSG00000110949.2	ENSMUST00000122924.2	1082	3	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	4	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTCTGGCATCTTCCGT	3564	False	NA	7	True	ATTAAA	-16	NA	4050630	4052101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4051329_4051627_4051706_4051795
transcript_45417.known	chr19	-	1436	10	FSM	ENSMUSG00000037916.15	ENSMUST00000128787.8	1436	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	454.671065472367	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATTTCTCATCCCTTTGG	6559	False	NA	-62	True	NA	NA	NA	4062673	4057561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062577
transcript_45418.known	chr19	-	1619	10	FSM	ENSMUSG00000037916.15	ENSMUST00000237862.2	1619	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_9	453.44895039826	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTCTCTTTTTGTGGCAC	6538	False	NA	NA	False	NA	NA	NA	4062694	4057383	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062593
transcript_45423.known	chr19	-	1661	10	FSM	ENSMUSG00000037916.15	ENSMUST00000042497.14	1661	10	0	0	0	0	multi-exon	FALSE	canonical	3	1250	junction_6	107.070877644232	7217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGAACTTTGCTTTTC	6426	False	NA	3	True	AATAAA	-30	NA	4062806	4057496	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062550
transcript_45428.known	chr19	-	821	7	FSM	ENSMUSG00000060803.7	ENSMUST00000169613.4	821	7	0	0	0	0	multi-exon	FALSE	canonical	3	1999	junction_6	828.939215034626	16354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTGTCTTTGGTGCTGTT	NA	False	NA	NA	False	AATAAA	-16	NA	4087985	4085406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4085662_4085823_4085932_4086687_4086792_4087103_4087192_4087289_4087397_4087584_4087621_4087862
transcript_4543.nic	chr1	+	573	3	NIC	ENSMUSG00000042751.15	novel	4626	11	NA	NA	-3180	-133	combination_of_known_junctions	FALSE	canonical	3	57	junction_2	1	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGGTGTGGCTTGTTTTCCT	NA	False	NA	8	True	AAGAAA	-20	NA	152966045	152970210	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_152966288_152969782_152969860_152969956
transcript_45431.known	chr19	-	670	7	FSM	ENSMUSG00000060803.7	ENSMUST00000237982.2	670	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	1372.45627333705	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTATGTGGCTCGCCTCA	NA	False	NA	NA	False	NA	NA	NA	4087925	4085572	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4085662_4085823_4085932_4086687_4086792_4087103_4087192_4087289_4087472_4087584_4087621_4087862
transcript_4544.nnic	chr1	+	700	3	NNC	ENSMUSG00000042751.15	novel	4626	11	NA	NA	-3180	3522	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_2	8.5	116	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGAGCGTCCCACATTCTT	NA	False	NA	30	True	NA	NA	NA	152966045	152973865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_152966288_152969782_152969860_152973484
transcript_45443.known	chr19	-	423	2	FSM	ENSMUSG00000060803.7	ENSMUST00000236211.2	423	2	0	0	0	0	multi-exon	FALSE	canonical	3	4470	junction_1	0	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGGTGTCTTTGGTGCTG	NA	False	NA	NA	False	AATAAA	-14	NA	4085993	4085408	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4085662_4085823
transcript_45444.known	chr19	-	532	4	FSM	ENSMUSG00000060803.7	ENSMUST00000237273.2	532	4	0	0	0	0	multi-exon	FALSE	canonical	3	2272	junction_3	483.741896285842	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCGCCCAGATGGATATGG	NA	False	NA	NA	False	NA	NA	NA	4087896	4086766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4086792_4087103_4087192_4087289_4087397_4087584
transcript_45453.known	chr19	-	321	4	FSM	ENSMUSG00000038155.12	ENSMUST00000237999.2	321	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	1403.41709963772	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATATGGCACCATGATC	NA	False	NA	NA	False	NA	NA	NA	4092218	4091013	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4091086_4091397_4091486_4091583_4091691_4092164
transcript_45454.known	chr19	-	797	7	FSM	ENSMUSG00000038155.12	ENSMUST00000042700.12	797	7	0	0	0	0	multi-exon	FALSE	canonical	3	1174	junction_6	961.706469424706	20779	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTGTCTTTGGTGCCGTT	NA	False	NA	NA	False	AATAAA	-16	NA	4092263	4090284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4090540_4090707_4090816_4090981_4091086_4091397_4091486_4091583_4091691_4091902_4091939_4092164
transcript_45455.known	chr19	-	429	2	FSM	ENSMUSG00000038155.12	ENSMUST00000237565.2	429	2	0	0	0	0	multi-exon	FALSE	canonical	3	3855	junction_1	0	532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGGTGTCTTTGGTGCCG	NA	False	NA	NA	False	AATAAA	-14	NA	4090883	4090286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4090540_4090707
transcript_45457.known	chr19	-	708	7	FSM	ENSMUSG00000058216.14	ENSMUST00000189808.7	708	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	28.8236978119664	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTGCAGGGCTTGTCCT	9073	False	NA	NA	False	NA	NA	NA	4109446	4107476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4107719_4107887_4107996_4108085_4108190_4108528_4108617_4108734_4108842_4109258_4109295_4109423
transcript_4546.nnic	chr1	+	457	3	NNC	ENSMUSG00000042751.15	novel	539	3	NA	NA	6	-133	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	23.5	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGGTGTGGCTTGTTTTCCT	NA	False	NA	8	True	AAGAAA	-20	NA	152969231	152970210	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_152969358_152969782_152969860_152969956
transcript_45460.nnic	chr19	-	785	6	NNC	ENSMUSG00000058216.14	novel	708	7	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	27.9828518918283	100	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTGCAGGGCTTGTCCT	9047	False	NA	NA	False	NA	NA	NA	4109472	4107476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_4107719_4107887_4107996_4108085_4108190_4108528_4108617_4108734_4108842_4109336
transcript_45461.nic	chr19	-	820	6	NIC	ENSMUSG00000058216.14	novel	708	7	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_5	25.7029181222678	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTGCAGGGCTTGTCCT	8925	False	NA	NA	False	NA	NA	NA	4109594	4107476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_4107719_4107887_4107996_4108085_4108190_4108528_4108617_4108734_4108842_4109423
transcript_45462.nnic	chr19	-	708	6	NNC	ENSMUSG00000058216.14	novel	708	7	NA	NA	-90	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_5	26.460536653666	87	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTGCAGGGCTTGTCCT	8860	False	NA	NA	False	NA	NA	NA	4109659	4107476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_4107719_4107887_4107996_4108085_4108190_4108528_4108617_4108734_4108842_4109600
transcript_45469.nnic	chr19	-	851	4	NIC	ENSMUSG00000058216.14	novel	708	7	NA	NA	164	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_3	34.9221356098901	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTGCAGGGCTTGTCCT	9388	False	NA	NA	False	NA	NA	NA	4109131	4107476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_4107719_4107887_4107996_4108085_4108190_4108734
transcript_45470.known	chr19	+	843	4	FSM	ENSMUSG00000024856.11	ENSMUST00000174799.2	843	4	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	272.140078309356	732	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTCTCAGCCTTTCTGTG	7096	False	NA	27	True	AATAAA	-16	NA	4147401	4149010	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4147508_4147816_4147908_4148004_4148138_4148497
transcript_45471.known	chr19	+	1089	4	FSM	ENSMUSG00000024856.11	ENSMUST00000172914.2	1089	4	0	0	0	0	multi-exon	TRUE	canonical	3	90	junction_1	272.960721635102	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTCTGTGTGTGGTTCC	7095	False	NA	36	True	AATAAA	-25	NA	4147400	4149019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4147734_4147816_4147918_4148004_4148138_4148497
transcript_45472.known	chr19	+	386	3	FSM	ENSMUSG00000024856.11	ENSMUST00000174149.8	386	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	297	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACAGTTCAGTAAGGATG	7096	False	NA	NA	False	NA	NA	NA	4147401	4148193	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4147508_4147816_4147908_4148004
transcript_45476.known	chr19	-	1378	7	FSM	ENSMUSG00000024847.16	ENSMUST00000117831.8	1378	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	105.801307490346	964	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATCTTGAAGGCTGGTCA	9616	False	NA	-3	True	TATAAA	-35	NA	4175858	4164445	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4164797_4165080_4165223_4165319_4165497_4165981_4166171_4168086_4168267_4171335_4171546_4175729
transcript_45480.known	chr19	-	1261	6	FSM	ENSMUSG00000024847.16	ENSMUST00000025767.14	1261	6	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_5	15.3310143173894	1110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGCTTTGCAGAACTAATC	3902	False	NA	-21	True	TATAAA	-17	NA	4171575	4164463	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4164797_4165080_4165223_4165319_4165497_4165981_4166171_4168086_4168267_4171335
transcript_45487.known	chr19	+	937	7	FSM	ENSMUSG00000024845.20	ENSMUST00000148807.11	937	7	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_2	194.337907321815	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTGCACTTTCCTGGGCC	4390	False	NA	NA	False	AATAAA	-24	NA	4175978	4181734	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4176200_4177055_4177132_4177548_4177639_4177758_4177836_4181029_4181075_4181227_4181282_4181360
transcript_45488.known	chr19	+	1615	6	FSM	ENSMUSG00000024845.20	ENSMUST00000130619.11	1615	6	0	0	0	0	multi-exon	FALSE	canonical	3	568	junction_2	76.3952878127964	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAAACCGAGAATCTTT	4371	False	NA	NA	False	AATAAA	-8	NA	4175959	4182284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4176200_4177055_4177121_4177548_4177836_4181029_4181075_4181227_4181282_4181360
transcript_45489.known	chr19	+	1488	7	FSM	ENSMUSG00000024845.20	ENSMUST00000139987.10	1488	7	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	239.625691907655	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAAATCTGAGCTCACAG	4371	False	NA	NA	False	AATAAA	-28	NA	4175959	4182304	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4176200_4177055_4177121_4177575_4177639_4177758_4177836_4181029_4181075_4181227_4181282_4181360
transcript_4549.nnic	chr1	+	593	3	NNC	ENSMUSG00000042751.15	novel	4638	12	NA	NA	111	-133	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	20.5	140	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGGTGTGGCTTGTTTTCCT	NA	False	NA	8	True	AAGAAA	-20	NA	152969336	152970210	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_152969599_152969782_152969860_152969956
transcript_45490.known	chr19	+	1012	5	FSM	ENSMUSG00000024845.20	ENSMUST00000139718.10	1012	5	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_3	207.505421615918	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACAAGGACAGTTGCACTT	4370	False	NA	NA	False	AATAAA	-15	NA	4175958	4181725	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4176200_4177055_4177121_4177548_4177836_4181227_4181282_4181360
transcript_45491.known	chr19	+	874	6	FSM	ENSMUSG00000024845.20	ENSMUST00000140405.10	874	6	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_2	248.896283620306	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGGACAGTTGCACTTT	4400	False	NA	NA	False	AATAAA	-16	NA	4175988	4181726	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4176200_4177055_4177132_4177548_4177639_4177758_4177836_4181227_4181282_4181360
transcript_45492.known	chr19	+	800	5	FSM	ENSMUSG00000024845.20	ENSMUST00000151401.11	800	5	0	0	0	0	multi-exon	FALSE	canonical	1	10	junction_3	296.989057037461	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGGACAGTTGCACTTT	4386	False	NA	NA	False	AATAAA	-16	NA	4175974	4181726	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4176200_4177055_4177121_4177548_4177639_4181227_4181282_4181360
transcript_45495.nnic	chr19	-	939	4	NNC	ENSMUSG00000024842.9	novel	1433	6	NA	NA	1770	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	1.69967317119759	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGATGTGGTGGTTTGTG	3524	False	NA	NA	False	AATAAA	-26	NA	4187555	4185421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_4186015_4186112_4186261_4187105_4187216_4187467
transcript_45496.known	chr19	-	2719	5	FSM	ENSMUSG00000024842.9	ENSMUST00000236071.2	2719	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	2.27760839478607	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGATGTGGTGGTTTGTG	8141	False	NA	NA	False	AATAAA	-26	NA	4189562	4185421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4186015_4186112_4186261_4187105_4188692_4188772_4188804_4189201
transcript_45502.nic	chr19	+	1920	11	NIC	ENSMUSG00000024835.16	novel	1888	11	NA	NA	-39	0	combination_of_known_junctions	TRUE	canonical	3	402	junction_1	75.9439925208044	1122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGACCTACTGTTGTGG	3536	False	NA	18	True	AATAAA	-19	NA	4198578	4204034	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_+_4198729_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225_4203490_4203595
transcript_45508.known	chr19	+	1888	11	FSM	ENSMUSG00000024835.16	ENSMUST00000008893.9	1888	11	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_1	114.751906302248	715	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGACCTACTGTTGTGG	3575	False	NA	18	True	AATAAA	-19	NA	4198617	4204034	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4198736_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225_4203490_4203595
transcript_4551.nnic	chr1	+	587	3	NNC	ENSMUSG00000042751.15	novel	4638	12	NA	NA	244	3522	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	13	130	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGAGCGTCCCACATTCTT	NA	False	NA	30	True	NA	NA	NA	152969469	152973865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_152969599_152969782_152969860_152973484
transcript_4552.known	chr1	+	4626	11	FSM	ENSMUSG00000042751.15	ENSMUST00000043313.15	4626	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	104.445200942887	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGAGTCTTGTGTCTTTGT	5993	False	NA	13	True	AATAAA	-14	NA	152830748	152995007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_152830945_152949542_152949632_152950418_152950487_152952654_152952734_152962082_152962210_152964529_152964611_152966242_152966288_152969782_152969860_152987887_152987990_152988125_152988194_152991313
transcript_45526.known	chr19	+	927	2	FSM	ENSMUSG00000045826.10	ENSMUST00000061086.9	927	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCCACTCTTGTGTCCCG	388	False	NA	NA	False	NA	NA	NA	4204604	4206750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4204703_4205921
transcript_45527.known	chr19	+	854	6	FSM	ENSMUSG00000024835.16	ENSMUST00000237125.2	854	6	0	0	0	0	multi-exon	FALSE	canonical	3	402	junction_1	103.619303220973	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGAGTGATGTAGCAAGC	3588	False	NA	NA	False	NA	NA	NA	4198630	4200823	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4198729_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705
transcript_45528.known	chr19	-	1979	15	FSM	ENSMUSG00000024830.18	ENSMUST00000130469.8	1979	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_9	32.5877935079116	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGTGGCTTTTGCCGGA	2803	False	NA	-2	True	AGTAAA	-14	NA	4213299	4206793	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4207199_4207480_4207594_4207680_4207789_4207877_4207956_4208064_4208128_4208608_4208919_4209001_4209093_4209225_4209327_4209401_4209460_4209564_4209705_4211066_4211215_4212258_4212328_4212601_4212723_4212820_4212862_4213166
transcript_45529.known	chr19	-	1753	15	FSM	ENSMUSG00000024830.18	ENSMUST00000127605.8	1753	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	26.377556941538	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGGCTTTTGCCGGACTC	2807	False	NA	1	True	AGTAAA	-17	NA	4213295	4206790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4207199_4207480_4207594_4207680_4207789_4207877_4207956_4208064_4208128_4208608_4208717_4208801_4208919_4209001_4209093_4209225_4209327_4209401_4209460_4211066_4211215_4212258_4212328_4212601_4212723_4212820_4212862_4213166
transcript_45530.known	chr19	-	2090	14	FSM	ENSMUSG00000024830.18	ENSMUST00000154307.8	2090	14	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_5	26.2800124287345	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGTGGCTTTTGCCGGA	2787	False	NA	-2	True	AGTAAA	-14	NA	4213315	4206793	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4207199_4207480_4207594_4207680_4207789_4207877_4207956_4208064_4208363_4208608_4208919_4209001_4209093_4209225_4209327_4209401_4209460_4211066_4211215_4212258_4212328_4212601_4212723_4212820_4212862_4213166
transcript_45531.known	chr19	-	878	2	FSM	ENSMUSG00000040247.7	ENSMUST00000238094.2	878	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTCCTCCACTCTCCA	NA	False	NA	NA	False	AATAAA	-35	NA	4235531	4234375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4235073_4235350
transcript_45539.known	chr19	-	2081	11	FSM	ENSMUSG00000024824.8	ENSMUST00000025740.8	2081	11	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_4	40.0660704337224	527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTGTGTGTTCCCCGTGAC	5998	False	NA	0	True	AATAAA	-15	NA	4251635	4245194	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4246082_4246179_4246382_4247111_4247250_4247337_4247403_4247475_4247586_4247669_4247780_4250270_4250371_4250463_4250579_4250927_4251057_4251327_4251399_4251481
transcript_4555.nnic	chr1	-	2354	7	NNC	ENSMUSG00000026479.14	novel	4916	23	NA	NA	-4611	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	44.5570794973519	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGAGTTTCTGATTTTATT	NA	False	NA	-1	True	AATAAA	-19	NA	153007591	152998501	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_153000030_153002561_153002662_153002751_153002911_153004702_153004903_153005781_153005897_153006395_153006546_153007489
transcript_45553.known	chr19	-	2101	10	FSM	ENSMUSG00000024824.8	ENSMUST00000237467.2	2101	10	0	0	0	0	multi-exon	FALSE	canonical	3	364	junction_3	31.4889751429854	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATAAAGGAAAGACAC	6027	False	NA	-24	True	NA	NA	NA	4251606	4245218	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4246082_4246179_4246382_4247111_4247250_4247337_4247586_4247669_4247780_4250270_4250371_4250463_4250579_4250927_4251057_4251327_4251399_4251481
transcript_45562.known	chr19	+	1318	7	FSM	ENSMUSG00000040385.8	ENSMUST00000236181.2	1318	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	1475.23350317463	1009	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATAGCCTCTGTCTCTCT	3645	False	NA	30	True	AATAAA	-19	NA	4242431	4245418	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4242485_4242743_4242876_4243020_4243252_4243765_4243871_4244465_4244690_4244770_4244906_4244980
transcript_45565.known	chr19	+	1473	7	FSM	ENSMUSG00000040385.8	ENSMUST00000046094.6	1473	7	0	0	0	0	multi-exon	TRUE	canonical	3	3675	junction_3	183.825475806689	16393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATAGCCTCTGTCTCTCTT	3277	False	NA	31	True	AATAAA	-20	NA	4242063	4245419	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4242271_4242743_4242876_4243020_4243252_4243765_4243871_4244465_4244690_4244770_4244906_4244980
transcript_45567.known	chr19	+	835	3	FSM	ENSMUSG00000118245.2	ENSMUST00000236928.2	835	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	1	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACTAGCGACTCGAGAACT	NA	False	NA	NA	False	AATAAA	-43	NA	4251777	4253239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4251798_4252125_4252238_4252536
transcript_45568.known	chr19	+	913	4	FSM	ENSMUSG00000024854.5	ENSMUST00000025773.5	913	4	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_3	2.16024689946929	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGACCTTACATCTCTTA	NA	False	NA	6	True	AATAAA	-18	NA	4281952	4283688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4282243_4282516_4282607_4282801_4282914_4283267
transcript_45569.known	chr19	+	1847	3	FSM	ENSMUSG00000040663.10	ENSMUST00000046506.7	1847	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTTGGACTCTTTGCCT	1775	False	NA	NA	False	AATAAA	-12	NA	4264291	4273544	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4264555_4270231_4270399_4272127
transcript_45570.known	chr19	+	646	3	FSM	ENSMUSG00000040663.10	ENSMUST00000126457.2	646	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCAGCCTCCAGCAGCTT	2131	False	NA	NA	False	NA	NA	NA	4264647	4272567	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4264687_4270231_4270399_4272127
transcript_45571.known	chr19	+	631	3	FSM	ENSMUSG00000024854.5	ENSMUST00000237518.2	631	3	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAGTCCTGAGGTGTTCA	NA	False	NA	NA	False	NA	NA	NA	4282039	4283139	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4282243_4282516_4282607_4282801
transcript_45572.known	chr19	+	645	3	FSM	ENSMUSG00000024854.5	ENSMUST00000235306.2	645	3	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	2.5	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTCTGACCTTACATCTC	NA	False	NA	3	True	AATAAA	-15	NA	4282491	4283685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4282607_4282801_4282914_4283267
transcript_45573.known	chr19	-	2705	14	FSM	ENSMUSG00000034616.18	ENSMUST00000113852.6	2705	14	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_12	2.03228381748045	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAAGACATTTTCCATTT	2350	False	NA	-25	True	AATAAA	-14	NA	4319208	4311723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4312661_4313574_4313846_4313935_4314137_4314341_4314489_4315130_4315178_4315319_4315449_4315637_4315732_4315837_4316027_4316134_4316201_4316402_4316475_4316549_4316666_4317774_4318007_4318572_4318611_4319042
transcript_45574.known	chr19	-	2139	15	FSM	ENSMUSG00000005986.17	ENSMUST00000056888.13	2139	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	4.70128076340124	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTGCTGTCCTGCGTGGT	860	False	NA	-5	True	AATAAA	-17	NA	4333163	4320207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4320578_4320821_4320914_4320993_4321158_4321246_4321364_4321469_4321628_4322597_4322729_4322827_4322890_4323048_4323131_4323563_4323631_4330564_4330755_4330964_4331109_4331190_4331237_4331945_4332071_4332196_4332333_4332908
transcript_45577.known	chr19	-	3581	8	FSM	ENSMUSG00000049303.11	ENSMUST00000059295.10	3581	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	1.55182578445717	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAGGGAGCCCTGCTCAG	NA	False	NA	NA	False	AATAAA	-20	NA	4527475	4495935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4497889_4500956_4501091_4502304_4502426_4503792_4504009_4506522_4506916_4510644_4510839_4517934_4517992_4526962
transcript_45578.known	chr19	-	1344	5	FSM	ENSMUSG00000041845.12	ENSMUST00000048197.10	1344	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	4.02336923485777	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACATTCAAAGAGCTTAGC	9148	False	NA	NA	False	NA	NA	NA	4489460	4475486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4476285_4476654_4476790_4482082_4482193_4482795_4482884_4489247
transcript_4558.known	chr1	-	766	4	FSM	ENSMUSG00000073538.11	ENSMUST00000188717.2	766	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	40.5407887880287	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGAGGGGTGTGGCCTGC	NA	False	NA	NA	False	NA	NA	NA	153289979	153281992	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_153282348_153283347_153283436_153284082_153284317_153289890
transcript_45585.known	chr19	-	1495	4	FSM	ENSMUSG00000041845.12	ENSMUST00000117462.2	1495	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	2.62466929133727	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTAGTGTCCTGACTCTTC	9159	False	NA	-4	True	ACTAAA	-15	NA	4489449	4475694	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4476790_4482082_4482193_4482795_4482884_4489247
transcript_45586.known	chr19	+	4061	21	FSM	ENSMUSG00000024892.18	ENSMUST00000224726.3	4061	21	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_8	10.9748576300561	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGGTCATGTACAGTCTAC	1701	False	NA	10	True	AATAAA	-25	NA	4560513	4671707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4560610_4565681_4565719_4651627_4651764_4651892_4652078_4652237_4652404_4652501_4652648_4652785_4652904_4653087_4653240_4654492_4654612_4657559_4657723_4659891_4660075_4667607_4667753_4667992_4668083_4668169_4668549_4668985_4669227_4669347_4669598_4669807_4670053_4670141_4670322_4670394_4670644_4670847_4670989_4671067
transcript_45589.known	chr19	-	1455	8	FSM	ENSMUSG00000024889.6	ENSMUST00000225476.2	1455	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	109.573011722592	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTTGGAACCTTGGGAC	NA	False	NA	-9	True	ATTAAA	-21	NA	4675669	4672618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674210_4674687_4674792_4675040_4675125_4675220_4675324_4675460
transcript_45590.known	chr19	-	1425	8	FSM	ENSMUSG00000024889.6	ENSMUST00000025823.6	1425	8	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_6	48.136286113662	489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATGGTCTTGGAACCTTG	NA	False	NA	-13	True	ATTAAA	-17	NA	4675668	4672622	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674210_4674712_4674792_4675040_4675125_4675220_4675324_4675460
transcript_45595.known	chr19	+	1783	4	FSM	ENSMUSG00000033760.18	ENSMUST00000036744.8	1783	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_3	20.1163283594862	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTCTTAACTGAGTGGC	NA	False	NA	NA	False	AATAAA	-17	NA	4806598	4815968	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4806690_4807273_4807698_4812004_4812676_4815371
transcript_45599.nic	chr19	-	1487	4	Fusion	ENSMUSG00000006456.11_ENSMUSG00000094936.9	novel	1411	4	NA	NA	8	0	multi-exon	FALSE	canonical	3	15	junction_1	22.7303028283098	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTATGTGTGCTTTGAGAA	7773	False	NA	-4	True	AATAAA	-16	NA	4861654	4835180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr19_-_4835596_4842425_4842849_4843843_4844038_4861199
transcript_4560.known	chr1	-	1964	2	FSM	ENSMUSG00000073538.11	ENSMUST00000186785.7	1964	2	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	0	614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAGAAAAAATATAA	NA	False	NA	NA	False	AATAAA	-5	NA	153283536	153280572	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_153282348_153283347
transcript_45601.nic	chr19	-	1311	4	Fusion	ENSMUSG00000006456.11_ENSMUSG00000094936.9	novel	1197	4	NA	NA	8	-4	multi-exon	FALSE	canonical	2	4	junction_1	26.9608770051883	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTAAGTAATGTTATTTA	7773	False	NA	-15	True	NA	NA	NA	4861654	4840099	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr19_-_4840339_4842425_4842849_4843843_4844038_4861199
transcript_45604.known	chr19	+	953	5	FSM	ENSMUSG00000067889.8	ENSMUST00000238976.3	953	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	6.53834841531101	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGAAGGCGGAGTTAGTG	NA	False	NA	NA	False	NA	NA	NA	4771106	4776248	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4771561_4774107_4774260_4774657_4774832_4775928_4776021_4776167
transcript_45605.known	chr19	+	1211	3	FSM	ENSMUSG00000033760.18	ENSMUST00000183008.2	1211	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	39	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGTAGACTTG	NA	False	NA	NA	False	NA	NA	NA	4806591	4810729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4806690_4807273_4807698_4810040
transcript_45606.known	chr19	+	1443	3	FSM	ENSMUSG00000033760.18	ENSMUST00000182821.8	1443	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	14.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACCAGTTGTAAAAAGATAC	NA	False	NA	NA	False	AGTAAA	-11	NA	4806570	4812904	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4806690_4807273_4807698_4812004
transcript_4561.known	chr1	+	2092	10	FSM	ENSMUSG00000042708.13	ENSMUST00000042373.12	2092	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_5	1.36986977843755	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTCTTTCAATTAGTGG	142	False	NA	3	True	ATTAAA	-14	NA	153300907	153328320	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_153301333_153304305_153304456_153308920_153309136_153311508_153311596_153311663_153311883_153313270_153313377_153321543_153321698_153323469_153323721_153324646_153324770_153327958
transcript_45611.known	chr19	-	3165	3	FSM	ENSMUSG00000006456.11	ENSMUST00000006625.8	3165	3	0	0	0	0	multi-exon	FALSE	canonical	3	363	junction_1	19	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCAGGATGGTTCTGGCT	7765	False	NA	NA	False	AATAAA	-17	NA	4861662	4850596	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4851834_4852578_4854044_4861199
transcript_45612.known	chr19	+	4194	2	FSM	ENSMUSG00000033760.18	ENSMUST00000182065.2	4194	2	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATGAGAACAGTTCCTAAA	NA	False	NA	NA	False	AATAAA	-18	NA	4806592	4811370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4806690_4807273
transcript_45613.known	chr19	-	456	2	FSM	ENSMUSG00000096370.9	ENSMUST00000178404.2	456	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTATGTGTGCTTTGAGAA	8187	False	NA	-4	True	AATAAA	-16	NA	4861240	4835180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4835596_4861199
transcript_45614.known	chr19	-	2610	4	FSM	ENSMUSG00000094936.9	ENSMUST00000180248.8	2610	4	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_3	29.8923996285938	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTTTGTCTTGGGTGAC	NA	False	NA	NA	False	AATAAA	-13	NA	4843929	4834320	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4835596_4837388_4838071_4842425_4842849_4843699
transcript_45615.known	chr19	-	1018	3	FSM	ENSMUSG00000094936.9	ENSMUST00000178615.8	1018	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	5.5	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTATGTGTGCTTTGAGAA	NA	False	NA	-4	True	AATAAA	-16	NA	4843879	4835180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4835596_4842425_4842849_4843699
transcript_45616.known	chr19	-	3508	2	FSM	ENSMUSG00000006456.11	ENSMUST00000113793.4	3508	2	0	0	0	0	multi-exon	FALSE	canonical	3	401	junction_1	0	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTTGTCATTGTCTTGA	7814	False	NA	0	True	AATAAA	-27	NA	4861613	4850949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4854044_4861199
transcript_45618.known	chr19	-	1067	8	FSM	ENSMUSG00000034108.7	ENSMUST00000037246.7	1067	8	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_5	30.737864703499	4839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTGTCTCTGTGTTCTT	NA	False	NA	-7	True	ATTAAA	-20	NA	4889360	4875393	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883547_4884200_4884339_4888858_4888932_4889224
transcript_45619.known	chr19	-	984	8	FSM	ENSMUSG00000034108.7	ENSMUST00000236451.2	984	8	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	206.828727330078	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTGTCTCTGTGTTCTT	NA	False	NA	-7	True	ATTAAA	-20	NA	4889298	4875393	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883547_4884221_4884339_4888858_4888932_4889224
transcript_45620.known	chr19	-	870	8	FSM	ENSMUSG00000034108.7	ENSMUST00000236178.2	870	8	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_5	202.991002112841	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTGTCTCTGTGTTCTT	NA	False	NA	-7	True	ATTAAA	-20	NA	4889301	4875393	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883476_4884267_4884339_4888858_4888932_4889224
transcript_45621.known	chr19	-	840	7	FSM	ENSMUSG00000034108.7	ENSMUST00000235245.2	840	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	223.397814074653	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGCTGTAGCCTGAACAAA	NA	False	NA	-51	True	NA	NA	NA	4889315	4875437	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883547_4888858_4888932_4889224
transcript_45622.known	chr19	-	760	7	FSM	ENSMUSG00000034108.7	ENSMUST00000236567.2	760	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	223.654060747595	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGATAAGTGCTGTAGCCT	NA	False	NA	-58	True	NA	NA	NA	4889282	4875444	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4884200_4884339_4888858_4888932_4889224
transcript_45625.known	chr19	+	1980	14	FSM	ENSMUSG00000083282.4	ENSMUST00000119694.3	1980	14	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_8	8.77530154238379	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTGTAAGTGCTTAGTC	NA	False	NA	10	True	AATAAA	-21	NA	4905157	4910946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4905515_4905725_4905825_4906097_4906183_4906274_4906337_4906539_4906616_4907997_4908112_4908214_4908361_4908443_4908541_4908619_4908701_4909430_4909551_4909629_4909695_4909785_4909877_4910277_4910337_4910418
transcript_45627.known	chr19	+	2093	13	FSM	ENSMUSG00000083282.4	ENSMUST00000237784.2	2093	13	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_7	9.02773504263389	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTGTGTGGTGTAAGTG	NA	False	NA	3	True	AATAAA	-14	NA	4905248	4910939	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4905825_4906097_4906183_4906274_4906337_4906539_4906616_4907997_4908112_4908214_4908361_4908443_4908541_4908619_4908701_4909430_4909551_4909629_4909695_4909785_4909877_4910277_4910337_4910418
transcript_45628.known	chr19	-	2887	21	FSM	ENSMUSG00000006457.5	ENSMUST00000006626.5	2887	21	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_20	6.25519783859791	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTTGTTTTTGTTGTT	313	False	NA	4	True	AATAAA	-30	NA	4927937	4911243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4911532_4911612_4911772_4912197_4912264_4912351_4912499_4913162_4913343_4913437_4913573_4913998_4914182_4914452_4914594_4914680_4914790_4915326_4915478_4917568_4917717_4917840_4918072_4918745_4918839_4919385_4919472_4920939_4921022_4921109_4921189_4921624_4921713_4921798_4921886_4922266_4922387_4922569_4922685_4927738
transcript_4563.known	chr1	-	4561	28	FSM	ENSMUSG00000042699.12	ENSMUST00000186380.7	4561	28	0	0	0	0	multi-exon	TRUE	canonical	3	12	junction_24	37.4089841985242	847	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTGTCATTGATGTTCT	NA	False	NA	-1	True	AATAAA	-18	NA	153363354	153331503	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_153332500_153333276_153333478_153333798_153333915_153334005_153334236_153335083_153335212_153335303_153335466_153336023_153336136_153336727_153336889_153338297_153338451_153340085_153340160_153340363_153340459_153340600_153340815_153341422_153341524_153342777_153342935_153344619_153344703_153345345_153345488_153347365_153347558_153347971_153348050_153348146_153348309_153348417_153348508_153348892_153349030_153351408_153351456_153353786_153353936_153354611_153354725_153356877_153356996_153358487_153358629_153359485_153359619_153363278
transcript_45630.known	chr19	+	2269	3	FSM	ENSMUSG00000006463.14	ENSMUST00000162088.8	2269	3	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_1	79	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGTCTTTTTGTTTGTTT	NA	False	NA	22	True	NA	NA	NA	4928695	4935425	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4928765_4930148_4930427_4933503
transcript_45632.known	chr19	+	2558	3	FSM	ENSMUSG00000006463.14	ENSMUST00000006632.8	2558	3	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	34	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGTCTTTTTGTTTGTTT	NA	False	NA	22	True	NA	NA	NA	4928699	4935425	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4929058_4930148_4930427_4933503
transcript_45635.known	chr19	+	2314	3	FSM	ENSMUSG00000006463.14	ENSMUST00000162134.2	2314	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	74.5	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCATGTCTTTTTGTTTGT	NA	False	NA	20	True	NA	NA	NA	4928717	4935423	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_4928834_4930148_4930427_4933503
transcript_45638.known	chr19	-	1244	9	FSM	ENSMUSG00000006464.10	ENSMUST00000235498.2	1244	9	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_2	3.11247489949718	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGCCCAGCTAAATTATTT	5083	False	NA	NA	False	NA	NA	NA	4956646	4948829	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4949335_4950518_4950651_4952870_4952944_4953041_4953081_4953173_4953221_4953729_4954003_4956012_4956048_4956169_4956247_4956583
transcript_4564.known	chr1	-	2346	19	FSM	ENSMUSG00000042699.12	ENSMUST00000188345.2	2346	19	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_15	20.3910080642558	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTAAGTTCCCAAAACTTG	NA	False	NA	NA	False	CATAAA	-29	NA	153363397	153340087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_153340160_153340363_153340459_153340600_153340815_153341422_153341524_153342777_153342935_153344619_153344703_153345345_153345488_153347365_153347558_153347971_153348050_153348146_153348309_153348417_153348508_153348892_153349030_153351408_153351456_153353786_153353936_153354611_153354728_153356877_153356996_153358487_153358629_153359485_153359619_153363278
transcript_45641.known	chr19	-	2683	18	FSM	ENSMUSG00000063904.5	ENSMUST00000025851.4	2683	18	0	0	0	0	multi-exon	TRUE	canonical	3	495	junction_17	96.7659038009169	2751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCAGTGTATGTTTCTTT	NA	False	NA	-5	True	AATAAA	-17	NA	4978315	4957256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4957826_4959873_4960037_4963800_4963981_4964607_4964729_4964837_4964963_4965046_4965110_4966306_4966400_4966725_4966839_4966919_4967115_4967899_4967959_4968047_4968179_4968272_4968404_4971168_4971263_4972349_4972425_4973094_4973233_4973711_4973802_4976812_4977088_4978247
transcript_45642.known	chr19	-	2556	17	FSM	ENSMUSG00000063904.5	ENSMUST00000235781.2	2556	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	200.051829221829	1896	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGCAGTGTATGTTTCT	NA	False	NA	-7	True	AATAAA	-15	NA	4977091	4957258	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4957826_4959873_4960037_4963800_4963981_4964607_4964729_4964837_4964963_4965046_4965100_4966357_4966400_4966725_4966839_4966919_4967115_4967899_4967959_4968047_4968179_4968272_4968404_4971168_4971263_4972349_4972425_4973094_4973233_4973711_4973802_4976812
transcript_45645.known	chr19	-	422	2	FSM	ENSMUSG00000024901.16	ENSMUST00000143930.2	422	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGACAGGGTTTCTCATAG	8787	False	NA	NA	False	NA	NA	NA	4993074	4991627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4991941_4992965
transcript_45646.known	chr19	-	4110	7	FSM	ENSMUSG00000024901.16	ENSMUST00000025834.15	4110	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	5.01386965216377	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGCTGGTAAAGGACTTCA	8706	False	NA	NA	False	NA	NA	NA	4993155	4979744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_4982896_4984394_4984584_4984930_4985126_4986145_4986248_4988076_4988207_4991787_4991941_4992965
transcript_45648.known	chr19	+	813	5	FSM	ENSMUSG00000024902.6	ENSMUST00000236917.2	813	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_4	253.71871728353	2086	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAACTCTCAGCTTCTCTCC	3744	False	NA	10	True	AATAAA	-13	NA	5012375	5014972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5012544_5012906_5013003_5013353_5013448_5013533_5013718_5014701
transcript_45650.known	chr19	+	2401	12	FSM	ENSMUSG00000024891.7	ENSMUST00000025826.7	2401	12	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_10	25.5138918569071	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTCCTGGAGTGTTCACT	4269	False	NA	18	True	ATTAAA	-19	NA	5074098	5081997	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5074306_5074538_5074621_5076055_5076217_5076385_5076526_5077052_5077188_5077370_5077469_5077707_5077793_5078868_5079000_5079239_5079349_5079436_5079523_5080319_5080519_5081029
transcript_45652.nnic	chr19	+	2290	11	NIC	ENSMUSG00000024891.7	novel	2619	12	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_4	23.4795655837156	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGACGGATTCCTGGAGTGT	4244	False	NA	13	True	ATTAAA	-14	NA	5074073	5081992	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_+_5074306_5074538_5074621_5076055_5076217_5076385_5076526_5077370_5077469_5077707_5077793_5078868_5079000_5079239_5079349_5079436_5079523_5080315_5080519_5081029
transcript_45656.nnic	chr19	+	958	5	NNC	ENSMUSG00000024891.7	novel	2619	12	NA	NA	-6401	-3038	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGGCGTCCGGGGGAGGGG	NA	False	NA	NA	False	NA	NA	NA	5067486	5074039	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_5067699_5068325_5068385_5069080_5069180_5072911_5073015_5073554
transcript_45662.known	chr19	+	1388	10	FSM	ENSMUSG00000080268.5	ENSMUST00000116567.4	1388	10	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_4	16.1528195757556	1030	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGCTGATGTGTGGCTG	2730	False	NA	8	True	AATAAA	-19	NA	5091381	5099945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5091519_5095920_5096067_5096163_5096255_5096421_5096550_5096677_5096758_5096842_5096940_5097419_5097513_5098536_5098602_5099020_5099061_5099434
transcript_45667.nic	chr19	+	1492	10	NIC	ENSMUSG00000080268.5	novel	1388	10	NA	NA	12	-5	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	76.2029454082248	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGTGTGGCTGATGTGT	2742	False	NA	3	True	AATAAA	-14	NA	5091393	5099940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_+_5091640_5095920_5096067_5096163_5096255_5096421_5096550_5096677_5096758_5096842_5096940_5097419_5097513_5098536_5098602_5099020_5099061_5099434
transcript_45678.known	chr19	+	2032	2	FSM	ENSMUSG00000047379.8	ENSMUST00000053705.8	2032	2	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	0	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGGCTCTGTTACTCTC	202	False	NA	9	True	AATAAA	-16	NA	5088853	5091159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5090061_5090334
transcript_45679.known	chr19	+	2224	1	FSM	ENSMUSG00000047379.8	ENSMUST00000235776.2	2224	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTGGCTCTGTTACTCT	283	False	NA	8	True	AATAAA	-15	NA	5088934	5091158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5088900_5091200
transcript_45683.nnic	chr19	-	552	3	NNC	ENSMUSG00000061451.14	novel	633	3	NA	NA	-378	28	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	1.5	30	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCAGGCCACTCAGCCTG	NA	False	NA	-4	True	AATAAA	-36	NA	5122538	5120858	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_5121140_5121754_5121923_5122435
transcript_45684.nnic	chr19	-	612	3	NNC	ENSMUSG00000061451.14	novel	633	3	NA	NA	-699	28	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	1	29	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCAGGCCACTCAGCCTG	NA	False	NA	-4	True	AATAAA	-36	NA	5122859	5120858	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_5121140_5121754_5121923_5122696
transcript_45687.nnic	chr19	-	683	3	NNC	ENSMUSG00000061451.14	novel	633	3	NA	NA	-465	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	0.5	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTATGGACTTTCTCCC	NA	False	NA	-32	True	AATAAA	-8	NA	5122625	5120886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_5121140_5121682_5121923_5122435
transcript_45688.nic	chr19	-	899	3	NIC	ENSMUSG00000061451.14	novel	633	3	NA	NA	-942	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_1	0	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTATGGACTTTCTCCC	NA	False	NA	-32	True	AATAAA	-8	NA	5123102	5120886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_5121140_5121682_5121923_5122696
transcript_45691.known	chr19	+	1488	8	FSM	ENSMUSG00000024875.6	ENSMUST00000025811.6	1488	8	0	0	0	0	multi-exon	FALSE	canonical	3	484	junction_7	32.2509294281512	1361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTATTCATATTTTGTC	NA	False	NA	NA	False	GGGGCT	-14	NA	5138572	5142909	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5138777_5139446_5139659_5139799_5139905_5140031_5140111_5141395_5141454_5141568_5141725_5142156_5142251_5142329
transcript_45692.known	chr19	+	941	7	FSM	ENSMUSG00000024875.6	ENSMUST00000237025.2	941	7	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_5	203.430099925148	956	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTTGACCCTGGTTCC	NA	False	NA	26	True	NA	NA	NA	5138587	5142533	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5138777_5139446_5139659_5139799_5139905_5140031_5140111_5141395_5141454_5142156_5142251_5142329
transcript_45693.known	chr19	+	1018	7	FSM	ENSMUSG00000024875.6	ENSMUST00000238093.2	1018	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	209.84657093537	984	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTTGACCCTGGTTCC	NA	False	NA	26	True	NA	NA	NA	5138572	5142533	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5138777_5139446_5139659_5139799_5139905_5140031_5140111_5141395_5141454_5141568_5141725_5142329
transcript_45694.known	chr19	+	1036	7	FSM	ENSMUSG00000024875.6	ENSMUST00000237603.2	1036	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	207.598704770098	950	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAACTTGGCTTGACCCTGG	NA	False	NA	22	True	NA	NA	NA	5138565	5142529	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5138777_5139446_5139659_5139799_5139905_5141395_5141454_5141568_5141725_5142156_5142251_5142329
transcript_45695.known	chr19	-	1913	6	FSM	ENSMUSG00000024870.7	ENSMUST00000025804.7	1913	6	0	0	0	0	multi-exon	FALSE	canonical	3	994	junction_1	78.6628247649422	1080	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGTGGTGACTGAGTGTGG	1501	False	NA	0	True	AATAAA	-43	NA	5157100	5149232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5150601_5150694_5150827_5154668_5154765_5154860_5154957_5155205_5155279_5156952
transcript_45696.known	chr19	-	3169	16	FSM	ENSMUSG00000024862.17	ENSMUST00000116563.8	3169	16	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_15	16.0036107036992	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGCTTGTTTTGAGGAGT	NA	False	NA	-1	True	AATAAA	-18	NA	5168588	5157773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5158717_5159130_5159189_5159328_5159454_5159520_5159671_5159760_5159870_5160224_5160293_5160394_5160445_5161165_5161266_5161392_5161567_5161646_5161749_5161853_5161942_5162745_5162969_5163808_5163879_5163968_5164200_5167221_5167461_5168149
transcript_45697.known	chr19	-	2940	16	FSM	ENSMUSG00000024862.17	ENSMUST00000025798.13	2940	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	25.1779444929265	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGCTTGTTTTGAGGAGT	NA	False	NA	-1	True	AATAAA	-18	NA	5168328	5157773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5158717_5159130_5159189_5159328_5159454_5159520_5159671_5159760_5159870_5160224_5160287_5160394_5160445_5161165_5161266_5161392_5161567_5161646_5161749_5161853_5161942_5162745_5162969_5163808_5163879_5163968_5164200_5167221_5167498_5168149
transcript_45700.known	chr19	-	4869	24	FSM	ENSMUSG00000024855.11	ENSMUST00000025786.9	4869	24	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_19	9.30455099331212	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACTTGTTATCTTCGAT	NA	False	NA	NA	False	AATAAA	-25	NA	5323147	5183185	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5185054_5185147_5185268_5186720_5186948_5188957_5189094_5189307_5189351_5191187_5191231_5191634_5191738_5192271_5192383_5192543_5192699_5193378_5193486_5193802_5193908_5194827_5194964_5195098_5195215_5197154_5197236_5202301_5202396_5202687_5202849_5203691_5203752_5205716_5205798_5205883_5205976_5206384_5206530_5209995_5210122_5210745_5210836_5217951_5218040_5322566
transcript_45702.known	chr19	+	833	1	FSM	ENSMUSG00000118243.2	ENSMUST00000236582.2	833	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAATGCTTCCTTCCCCCTT	9576	False	NA	NA	False	AATAAA	-13	NA	5345223	5346056	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5345200_5346100
transcript_45703.known	chr19	-	3222	21	FSM	ENSMUSG00000024853.11	ENSMUST00000025774.11	3222	21	0	0	0	0	multi-exon	TRUE	canonical	3	1448	junction_15	340.757138589935	1266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTGGCTAACTACTTGGA	3866	False	NA	-25	True	AATAAA	-18	NA	5345483	5323959	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
transcript_45704.known	chr19	-	933	9	FSM	ENSMUSG00000024853.11	ENSMUST00000235182.2	933	9	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_4	555.172045405746	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGTCGGAACCGAAAGAAGAA	3918	False	NA	NA	False	NA	NA	NA	5345431	5337300	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5337313_5337562_5337655_5337937_5338035_5338331_5338439_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
transcript_45705.known	chr19	-	499	2	FSM	ENSMUSG00000118263.2	ENSMUST00000235862.2	499	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTCTTTACTCTTTATTT	9457	False	NA	0	True	NA	NA	NA	5357187	5355902	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5356162_5356947
transcript_45706.known	chr19	-	405	2	FSM	ENSMUSG00000118263.2	ENSMUST00000235637.2	405	2	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	0	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAAGTTCTTTACTCTTTA	9200	False	NA	-3	True	NA	NA	NA	5357444	5355905	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5356162_5357295
transcript_4573.nic	chr1	-	832	6	ISM	ENSMUSG00000042699.12	ENSMUST00000188345.2	2346	19	-104	13747	-95	188	5prime_fragment	FALSE	canonical	3	83	junction_2	16.7403703662733	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATCCAAGGAGAATATAAGT	NA	False	NA	NA	False	AAAAAG	-5	NA	153363501	153353834	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_153353936_153354611_153354728_153356877_153356996_153358487_153358629_153359485_153359619_153363278
transcript_45738.known	chr19	-	743	2	FSM	ENSMUSG00000024844.16	ENSMUST00000237704.2	743	2	0	0	0	0	multi-exon	FALSE	canonical	3	1029	junction_1	0	1853	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGGTGTTCTGTGTCAG	8558	False	NA	-8	True	AATAAA	-15	NA	5416819	5414667	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5415187_5416595
transcript_45739.known	chr19	-	758	3	FSM	ENSMUSG00000024844.16	ENSMUST00000170010.3	758	3	0	0	0	0	multi-exon	FALSE	canonical	3	1351	junction_2	2345.5	6202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTGGTGTTCTGTGTCA	8986	False	NA	-9	True	AATAAA	-14	NA	5416391	5414668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5415187_5415845_5415985_5416290
transcript_4574.known	chr1	-	1604	2	FSM	ENSMUSG00000042699.12	ENSMUST00000189425.2	1604	2	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAATTTTCAAATTATGT	NA	False	NA	NA	False	AAGAAA	-21	NA	153363380	153358116	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_153359619_153363278
transcript_45740.known	chr19	-	732	3	FSM	ENSMUSG00000024844.16	ENSMUST00000237167.2	732	3	0	0	0	0	multi-exon	FALSE	canonical	3	736	junction_2	2653	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATCTGTTGGATGCCCTT	8743	False	NA	-107	True	NA	NA	NA	5416634	5414766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5415187_5415845_5415985_5416461
transcript_45741.known	chr19	+	2556	6	FSM	ENSMUSG00000024841.9	ENSMUST00000025759.9	2556	6	0	0	0	0	multi-exon	TRUE	canonical	3	703	junction_2	59.7581793564697	2908	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTTTTTATGAAGAGTT	1792	False	NA	23	True	AATAAA	-40	NA	5416768	5421554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5417239_5418085_5418305_5418449_5418559_5418644_5418754_5418922_5418971_5419953
transcript_45742.known	chr19	+	444	3	FSM	ENSMUSG00000024841.9	ENSMUST00000235664.2	444	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	354.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGAACCATGTCCGCTCT	1996	False	NA	NA	False	AAAAAG	-28	NA	5416972	5418713	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5417239_5418449_5418559_5418644
transcript_45743.known	chr19	-	5091	20	FSM	ENSMUSG00000039148.6	ENSMUST00000044207.5	5091	20	0	0	0	0	multi-exon	FALSE	canonical	3	368	junction_1	46.7672968579718	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTATTTGGTTGTTTTTTTT	9040	False	NA	NA	False	AATAAA	-23	NA	5438731	5427550	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5430164_5430247_5430370_5430465_5430556_5431008_5431145_5431237_5431329_5431693_5431782_5431988_5432100_5432213_5432388_5432742_5432886_5432967_5433102_5433182_5433308_5433647_5433855_5433962_5434106_5434191_5434292_5434397_5434476_5434645_5434752_5434850_5434978_5435490_5435547_5435839_5435898_5438342
transcript_45744.known	chr19	-	494	5	FSM	ENSMUSG00000039148.6	ENSMUST00000236511.2	494	5	0	0	0	0	multi-exon	FALSE	canonical	3	368	junction_1	66.2962102989304	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCCAGATGTAGTGTTAAA	NA	False	NA	-50	True	AATGAA	-16	NA	5431348	5430128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5430164_5430247_5430370_5430465_5430556_5431008_5431145_5431237
transcript_45745.nic	chr19	-	1732	7	ISM	ENSMUSG00000039330.6	ENSMUST00000235569.2	1726	8	1166	0	1166	0	3prime_fragment	TRUE	canonical	3	8	junction_6	13.7234592334926	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTACAGTGTGAGACTTCT	6150	False	NA	NA	False	ATTAAA	-13	NA	5451388	5440076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_-_5440226_5440636_5440756_5440941_5441042_5444310_5444482_5449940_5450089_5450261_5450966_5451047
transcript_45749.known	chr19	-	487	4	FSM	ENSMUSG00000039330.6	ENSMUST00000044527.5	487	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	3.74165738677394	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTACAGTGTGAGACTTCT	3342	False	NA	NA	False	ATTAAA	-13	NA	5444429	5440076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5440226_5440636_5440756_5440941_5441042_5444310
transcript_45754.known	chr19	-	734	6	FSM	ENSMUSG00000024914.17	ENSMUST00000136579.3	734	6	0	0	0	0	multi-exon	FALSE	canonical	3	999	junction_1	82.8700187039921	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTTCTTAAATTTATTAAA	NA	False	NA	NA	False	NA	NA	NA	5474542	5472870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5473054_5473358_5473448_5473587_5473682_5473799_5473920_5474209_5474304_5474388
transcript_45756.known	chr19	-	744	6	FSM	ENSMUSG00000024914.17	ENSMUST00000113673.9	744	6	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	428.162866208643	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGATTTTGGTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	5474571	5472839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5473004_5473358_5473448_5473587_5473682_5473799_5473920_5474209_5474304_5474388
transcript_45758.known	chr19	-	727	7	FSM	ENSMUSG00000024914.17	ENSMUST00000148219.9	727	7	0	0	0	0	multi-exon	TRUE	canonical	3	40	junction_1	395.234705235031	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGGTTTCTTTTCATCC	NA	False	NA	NA	False	NA	NA	NA	5474787	5472833	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5473004_5473358_5473448_5473587_5473682_5473799_5473920_5474209_5474304_5474388_5474462_5474700
transcript_45759.known	chr19	-	608	4	FSM	ENSMUSG00000024914.17	ENSMUST00000127043.2	608	4	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	463.206937196181	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGGAGAAAGGTGGGATT	NA	False	NA	NA	False	NA	NA	NA	5474109	5472888	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5473004_5473358_5473448_5473587_5473682_5473799
transcript_45761.known	chr19	+	1528	2	FSM	ENSMUSG00000047423.11	ENSMUST00000159759.3	1528	2	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_1	0	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACACTGTCCTGATGGTT	247	False	NA	34	True	AATAAA	-35	NA	5475171	5477341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5475337_5475978
transcript_45762.known	chr19	+	1529	2	FSM	ENSMUSG00000047423.11	ENSMUST00000054477.8	1529	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACACTGTCCTGATGGTT	260	False	NA	34	True	AATAAA	-35	NA	5475184	5477341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5475337_5475964
transcript_45763.known	chr19	-	4165	2	FSM	ENSMUSG00000095098.3	ENSMUST00000236881.2	4165	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTGGCTAGAGTCATATA	5331	False	NA	NA	False	NA	NA	NA	5507532	5503212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5507213_5507367
transcript_45765.known	chr19	-	1241	10	FSM	ENSMUSG00000024910.6	ENSMUST00000025844.6	1241	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.15470053837925	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTGTGTGGATTCAGCT	NA	False	NA	NA	False	CATAAA	-17	NA	5518535	5515267	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5515480_5515557_5515759_5515832_5515898_5516047_5516174_5516258_5516340_5516416_5516514_5516608_5516764_5517050_5517165_5517865_5517951_5518430
transcript_45772.known	chr19	+	1209	10	FSM	ENSMUSG00000024911.8	ENSMUST00000225141.2	1209	10	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_5	12.1837779216647	740	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTGGTCCTTGTTCCAGG	NA	False	NA	17	True	AATAAA	-17	NA	5510643	5515079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5510807_5510988_5511188_5511417_5511545_5512559_5512661_5513198_5513333_5513631_5513741_5513814_5513879_5514156_5514244_5514361_5514460_5514952
transcript_45773.known	chr19	+	1215	10	FSM	ENSMUSG00000024911.8	ENSMUST00000025847.7	1215	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_5	35.2423706830007	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGACTGGTCCTTGTTCCA	NA	False	NA	15	True	AATAAA	-15	NA	5510656	5515077	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5510807_5510988_5511188_5511417_5511545_5512559_5512661_5513198_5513354_5513631_5513741_5513814_5513879_5514156_5514244_5514361_5514460_5514952
transcript_45774.known	chr19	-	2067	16	FSM	ENSMUSG00000024906.11	ENSMUST00000124334.8	2067	16	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_15	11.5573930163049	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAAGGTCCTTCTGAAAT	NA	False	NA	2	True	AATAAA	-39	NA	5538430	5532859	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5533058_5533135_5533220_5533482_5533587_5533662_5533792_5533957_5534054_5534140_5534258_5534886_5534985_5535066_5535189_5535285_5535382_5535515_5535654_5536056_5536143_5536307_5536377_5536514_5536617_5537052_5537136_5537789_5537920_5538015
transcript_45775.known	chr19	-	2070	16	FSM	ENSMUSG00000024906.11	ENSMUST00000133436.8	2070	16	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	26.0165759127181	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATCCAGCTGCCTCATTCT	NA	False	NA	NA	False	AAAAAG	-6	NA	5538044	5532372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5533058_5533135_5533220_5533482_5533587_5533662_5533694_5533957_5534054_5534140_5534258_5534886_5534985_5535066_5535189_5535285_5535382_5535515_5535654_5536056_5536143_5536307_5536377_5536514_5536617_5537052_5537136_5537789_5537920_5538015
transcript_45779.known	chr19	-	1954	16	FSM	ENSMUSG00000024906.11	ENSMUST00000025841.4	1954	16	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_2	26.5385254551441	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCTCGGCTGTTAAGG	NA	False	NA	-24	True	AATAAA	-13	NA	5538313	5532885	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5533058_5533135_5533250_5533482_5533587_5533662_5533792_5533957_5534054_5534140_5534258_5534886_5534985_5535066_5535189_5535285_5535382_5535515_5535654_5536056_5536143_5536307_5536377_5536514_5536617_5537052_5537136_5537789_5537920_5538015
transcript_4578.known	chr1	-	1735	12	FSM	ENSMUSG00000042684.9	ENSMUST00000041874.9	1735	12	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_4	13.2309429459759	273	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTTATTGTCTTAATCTT	NA	False	NA	-16	True	AATAAA	-20	NA	153425791	153378760	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_153379304_153384857_153384898_153388291_153388377_153390985_153391033_153391147_153391297_153394628_153394722_153400092_153400169_153403810_153403869_153411617_153411706_153413173_153413248_153421008_153421093_153425393
transcript_45781.nic	chr19	-	1728	15	ISM	ENSMUSG00000024906.11	ENSMUST00000124334.8	2067	16	435	0	-32	0	3prime_fragment	FALSE	canonical	3	83	junction_4	10.1992896911541	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAAGGTCCTTCTGAAAT	NA	False	NA	2	True	AATAAA	-39	NA	5537995	5532859	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_-_5533058_5533135_5533220_5533482_5533587_5533662_5533792_5533957_5534054_5534140_5534258_5534886_5534985_5535066_5535189_5535285_5535382_5535515_5535654_5536056_5536143_5536307_5536377_5536514_5536617_5537052_5537136_5537789
transcript_45789.known	chr19	+	2215	11	FSM	ENSMUSG00000024909.16	ENSMUST00000235523.2	2215	11	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	23.8706933288499	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTTTAGCCCAGGAGCT	NA	False	NA	NA	False	ATTAAA	-16	NA	5524342	5532545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5524424_5525088_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5527954_5528072_5528228_5528349_5530057_5530178_5530261_5530389_5530573_5530770_5531588
transcript_45790.nic	chr19	+	1852	11	NIC	ENSMUSG00000024909.16	novel	2634	11	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	23.0008695487801	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGGCTGAGGTGGGTGA	NA	False	NA	10	True	AATAAA	-15	NA	5523969	5531881	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_+_5524352_5525088_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5527954_5528072_5528228_5528349_5530057_5530178_5530261_5530389_5530573_5530770_5531588
transcript_45791.known	chr19	+	2634	11	FSM	ENSMUSG00000024909.16	ENSMUST00000166303.9	2634	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	23.5805004187782	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTTTAGCCCAGGAGCT	NA	False	NA	NA	False	ATTAAA	-16	NA	5523981	5532545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5524482_5525088_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5527954_5528072_5528228_5528349_5530057_5530178_5530261_5530389_5530573_5530770_5531588
transcript_45792.known	chr19	+	1557	11	FSM	ENSMUSG00000024909.16	ENSMUST00000165485.8	1557	11	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	7.8873316146844	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGGCTGAGGTGGGTGA	NA	False	NA	10	True	AATAAA	-15	NA	5524715	5531881	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5524803_5525088_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5527954_5528072_5528228_5528349_5530057_5530178_5530261_5530389_5530573_5530770_5531588
transcript_45800.known	chr19	-	748	2	FSM	ENSMUSG00000024906.11	ENSMUST00000144422.2	748	2	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGTGACATGG	NA	False	NA	NA	False	NA	NA	NA	5538339	5537495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5537920_5538015
transcript_45802.known	chr19	-	1703	13	FSM	ENSMUSG00000056185.6	ENSMUST00000070172.6	1703	13	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	3.3124344857253	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGGCTTGCCTTTACTTTC	42	False	NA	0	True	AATAAA	-21	NA	5560566	5545301	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5545677_5545924_5546011_5546085_5546246_5546343_5546431_5547013_5547054_5547317_5547394_5547474_5547581_5547702_5547808_5547932_5548057_5548207_5548330_5548423_5548535_5548747_5548853_5560360
transcript_45804.known	chr19	-	1872	12	FSM	ENSMUSG00000056185.6	ENSMUST00000237111.2	1872	12	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_9	3.10691045284274	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGTCGGCTTGCCTTTAC	117	False	NA	-4	True	AATAAA	-17	NA	5560491	5545305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5546011_5546085_5546246_5546343_5546431_5547013_5547054_5547317_5547394_5547474_5547581_5547702_5547808_5547932_5548057_5548207_5548330_5548423_5548535_5548747_5548853_5560360
transcript_45826.known	chr19	+	2354	4	FSM	ENSMUSG00000056201.9	ENSMUST00000209469.2	2354	4	0	0	0	0	multi-exon	FALSE	canonical	3	6173	junction_3	71.2850303749361	16758	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	5540482	5545229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5540631_5542524_5542833_5543182_5543260_5543408
transcript_45827.known	chr19	+	1148	6	FSM	ENSMUSG00000056201.9	ENSMUST00000116560.3	1148	6	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_4	3070.36039578418	28841	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATGGCTTTTGGGTTTGG	NA	False	NA	12	True	NA	NA	NA	5540512	5544057	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5540631_5542524_5542833_5543182_5543260_5543408_5543519_5543520_5543527_5543528
transcript_45829.known	chr19	-	2154	14	FSM	ENSMUSG00000024926.11	ENSMUST00000113641.4	2154	14	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_10	96.4922046702747	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATCAGGAGTTCTTACCA	3440	False	NA	-3	True	AATAAA	-18	NA	5660265	5653041	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5658829_5658986_5659263_5659401_5659490_5659560_5659879_5659947_5660045
transcript_45838.known	chr19	-	1386	13	FSM	ENSMUSG00000024926.11	ENSMUST00000236229.2	1386	13	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_9	61.0948147463342	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACACACTACCCATTGCCAT	3648	False	NA	NA	False	NA	NA	NA	5660057	5653445	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5659263_5659401_5659490_5659560_5659879_5659947_5660045
transcript_4584.nnic	chr1	+	1020	7	NNC	ENSMUSG00000042671.13	novel	5614	6	NA	NA	310	78	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1.69967317119759	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCGAGCTGATGGAGCTG	NA	False	NA	NA	False	AATGAA	-17	NA	153537136	153568809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_153537274_153541581_153541663_153543570_153543700_153546528_153546631_153547499_153547565_153566643_153566811_153568470
transcript_45849.known	chr19	+	771	3	FSM	ENSMUSG00000024925.12	ENSMUST00000155639.2	771	3	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_2	34.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATGCCTGAGTCTGTGGG	5147	False	NA	2	True	AATAAA	-11	NA	5652002	5652960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5652109_5652220_5652403_5652477
transcript_4585.known	chr1	+	2339	5	FSM	ENSMUSG00000026475.8	ENSMUST00000027748.8	2339	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCCAGGACAGTATGGAT	NA	False	NA	NA	False	AATAAA	-23	NA	153616094	153621214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_153616259_153616608_153616720_153617365_153617428_153617708_153617876_153619379
transcript_45850.known	chr19	+	393	3	FSM	ENSMUSG00000024925.12	ENSMUST00000136226.2	393	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	120.5	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGAGTCTGTGGGCACCTT	5407	False	NA	8	True	AATAAA	-17	NA	5652262	5652966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5652403_5652477_5652598_5652833
transcript_45851.known	chr19	+	271	2	FSM	ENSMUSG00000024925.12	ENSMUST00000133953.2	271	2	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	0	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCCTGAGTCTGTGGGCA	5582	False	NA	4	True	AATAAA	-13	NA	5652437	5652962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5652598_5652851
transcript_45852.known	chr19	-	1905	12	FSM	ENSMUSG00000024926.11	ENSMUST00000235701.2	1905	12	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_9	58.4797768251612	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTATCAGGAGTTCTTA	3629	False	NA	-6	True	AATAAA	-15	NA	5660076	5653044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5659263_5659401_5659490_5659560_5659879
transcript_45853.known	chr19	-	1960	11	FSM	ENSMUSG00000024926.11	ENSMUST00000236964.2	1960	11	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_9	57.9537746829316	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTATCAGGAGTTCTTAC	3895	False	NA	-5	True	AATAAA	-16	NA	5659810	5653043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5659263_5659401_5659490
transcript_45854.known	chr19	+	2716	11	FSM	ENSMUSG00000024927.9	ENSMUST00000025867.6	2716	11	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_5	8.59069263796581	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGAGAGTAGCTGTCTTT	NA	False	NA	10	True	AATAAA	-16	NA	5687510	5698158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5687870_5688459_5688487_5688578_5688731_5688882_5689032_5689886_5689979_5690330_5690463_5691208_5691314_5691491_5691705_5695352_5695434_5695540_5695616_5696827
transcript_45856.nic	chr19	-	1362	8	ISM	ENSMUSG00000056917.14	ENSMUST00000236006.2	3513	16	7326	-3	528	0	3prime_fragment	FALSE	canonical	3	60	junction_4	8.27832182540024	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTATTTGTGTTTGTGTGT	NA	False	NA	-3	True	AAAAAG	-24	NA	5704337	5701215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_-_5701591_5701663_5701743_5701933_5701989_5702072_5702175_5702288_5702398_5702482_5702595_5702682_5702902_5704026
transcript_45858.known	chr19	-	3583	16	FSM	ENSMUSG00000056917.14	ENSMUST00000169854.2	3583	16	0	0	0	0	multi-exon	TRUE	canonical	3	8	junction_15	19.0524422464826	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTGTTTGTGTGTTCA	8097	False	NA	0	True	AAAAAG	-27	NA	5713735	5701212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5701591_5701663_5701743_5701933_5701989_5702072_5702175_5702288_5702398_5702482_5702595_5702682_5702902_5704026_5704302_5704574_5705185_5705285_5705444_5705715_5705820_5706181_5706357_5709361_5709539_5709623_5709752_5710341_5711140_5713631
transcript_4586.known	chr1	+	2792	7	FSM	ENSMUSG00000026473.17	ENSMUST00000086199.12	2792	7	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	27.7213315376845	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTATTTCATTCCTTCTT	NA	False	NA	87	True	NA	NA	NA	153775689	153785469	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_153775806_153778679_153778859_153780282_153780445_153782094_153782242_153782765_153782894_153783031_153783232_153783609
transcript_45861.nic	chr19	+	1220	2	ISM	ENSMUSG00000024936.9	ENSMUST00000236818.2	1027	3	682	0	632	0	3prime_fragment	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGGGCTAAATCTTCTAG	7932	False	NA	NA	False	ATTAAA	-27	NA	5755680	5757137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_+_5756494_5756730
transcript_45864.known	chr19	-	705	4	FSM	ENSMUSG00000079478.10	ENSMUST00000159693.2	705	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	231.015631986717	610	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGGTTTGTTCTTTCTTGG	NA	False	NA	-1	True	AAAACA	-13	NA	5781760	5780334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5780741_5781268_5781354_5781466_5781624_5781703
transcript_4587.nnic	chr1	+	516	4	Antisense	novelGene_ENSMUSG00000100627.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0.816496580927726	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATGGAATGTTTTGTCCT	NA	False	NA	NA	False	TTTAAA	-3	NA	153972082	153988826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr1_+_153972314_153980782_153980821_153988037_153988083_153988624
transcript_45874.known	chr19	-	610	3	FSM	ENSMUSG00000079478.10	ENSMUST00000159008.2	610	3	0	0	0	0	multi-exon	FALSE	canonical	3	466	junction_1	5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTGTAAATCAGTGGGGC	NA	False	NA	NA	False	NA	NA	NA	5781727	5780919	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5781354_5781471_5781624_5781703
transcript_45876.known	chr19	-	826	2	FSM	ENSMUSG00000079478.10	ENSMUST00000160141.2	826	2	0	0	0	0	multi-exon	FALSE	canonical	3	503	junction_1	0	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGGTTTGTTCTTTCTTGG	NA	False	NA	-1	True	AAAACA	-13	NA	5781688	5780334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5780741_5781268
transcript_45877.known	chr19	-	2586	17	FSM	ENSMUSG00000024941.10	ENSMUST00000025890.10	2586	17	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	68.5770552007011	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGGTCCCAGCTCAGTC	9907	False	NA	-11	True	AATAAA	-13	NA	5821429	5808454	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5808725_5808827_5808889_5808967_5809175_5809298_5809371_5809692_5809782_5810008_5810174_5810560_5810637_5810740_5810930_5811680_5811837_5814696_5814811_5815337_5815446_5816185_5816345_5819496_5819653_5819748_5819840_5820230_5820581_5820750_5820892_5821247
transcript_45878.known	chr19	-	2395	17	FSM	ENSMUSG00000024941.10	ENSMUST00000236773.2	2395	17	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_4	63.7916224417439	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAGGAAAGGAGAAGAGAAA	9910	False	NA	NA	False	AAAAAG	-3	NA	5821426	5808690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5808725_5808827_5808889_5808967_5809175_5809298_5809368_5809692_5809833_5810008_5810174_5810560_5810637_5810740_5810930_5811680_5811837_5814696_5814811_5815337_5815446_5816185_5816345_5819496_5819653_5819748_5819840_5820230_5820581_5820750_5820892_5821247
transcript_45879.known	chr19	-	2719	16	FSM	ENSMUSG00000024941.10	ENSMUST00000235599.2	2719	16	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_11	19.8173885486683	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTCCCAGCTCAGTCCAA	9907	False	NA	-8	True	AATAAA	-16	NA	5821429	5808451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5808725_5808827_5809175_5809298_5809371_5809692_5809833_5810008_5810174_5810560_5810637_5810740_5810930_5811680_5811837_5814696_5814811_5815337_5815446_5816185_5816345_5819496_5819653_5819748_5819840_5820230_5820581_5820750_5820892_5821247
transcript_45883.known	chr19	-	6983	1	FSM	ENSMUSG00000092341.4	ENSMUST00000172812.3	6983	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2561	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGCTTCTTTGTGCAT	4061	False	NA	0	True	AATAAA	-17	NA	5852700	5845717	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5845700_5852700
transcript_45886.known	chr19	-	3004	2	FSM	ENSMUSG00000092274.4	ENSMUST00000174287.2	3004	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	325	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCTTAGAATTGTCATGG	10003	False	NA	-12	True	AATAAA	-15	NA	5895504	5892334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5894787_5894952
transcript_45887.known	chr19	-	4504	11	FSM	ENSMUSG00000024816.13	ENSMUST00000025728.13	4504	11	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_1	18.6118241986109	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCAGTTTAAATTATTTTA	4335	False	NA	NA	False	NA	NA	NA	5925302	5899729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5902771_5906612_5906818_5912278_5912423_5913251_5913376_5915096_5915322_5919464_5919632_5919763_5919823_5920038_5920141_5923196_5923365_5924737_5924823_5925118
transcript_45889.known	chr19	+	516	2	FSM	ENSMUSG00000043488.6	ENSMUST00000187697.2	516	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTACCTGTGCACACGCAT	NA	False	NA	NA	False	ATTAAA	-34	NA	5895650	5901416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5895779_5901028
transcript_45890.known	chr19	+	468	2	FSM	ENSMUSG00000043488.6	ENSMUST00000135347.2	468	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAATGTAGAGTTTGTGT	NA	False	NA	NA	False	ATTAAA	-18	NA	5898535	5901400	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5898632_5901028
transcript_45891.known	chr19	+	2480	6	FSM	ENSMUSG00000024818.16	ENSMUST00000025732.14	2480	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	2.63818119165458	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGATGATCCCTTTCTGT	2866	False	NA	NA	False	AATAAA	-17	NA	5927844	5935794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5928720_5929876_5929921_5930112_5930185_5930467_5930654_5934372_5934632_5934750
transcript_45892.known	chr19	-	2155	2	FSM	ENSMUSG00000044390.6	ENSMUST00000236767.2	2155	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCAGGATGTGGAGGACCT	8024	False	NA	NA	False	AATAAA	-15	NA	5944177	5941170	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5943146_5943997
transcript_45895.known	chr19	+	647	2	FSM	ENSMUSG00000110156.3	ENSMUST00000209642.2	647	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGAGCCTGGCTGTTCC	9224	False	NA	NA	False	NA	NA	NA	5962849	5964621	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5963101_5964225
transcript_45896.known	chr19	+	410	2	FSM	ENSMUSG00000110156.3	ENSMUST00000210917.2	410	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAGCTCACACTACACAG	9355	False	NA	0	True	NA	NA	NA	5962980	5964854	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5963101_5964564
transcript_45898.known	chr19	+	1843	1	FSM	ENSMUSG00000110156.3	ENSMUST00000235359.2	1843	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTCACACTACACAGCGG	9389	False	NA	3	True	NA	NA	NA	5963014	5964857	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_5963000_5964900
transcript_45899.known	chr19	-	3314	11	FSM	ENSMUSG00000024826.16	ENSMUST00000136983.8	3314	11	0	0	0	0	multi-exon	FALSE	canonical	3	642	junction_2	68.1739686390634	2286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTATGAGTGCTCTGTCT	1272	False	NA	NA	False	NA	NA	NA	5962899	5946543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5948660_5951244_5951327_5952131_5952245_5952390_5952520_5952658_5952797_5954267_5954347_5954481_5954575_5955416_5955581_5956551_5956660_5957028_5957190_5962768
transcript_4590.known	chr1	+	955	8	FSM	ENSMUSG00000026470.15	ENSMUST00000195302.6	955	8	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_7	71.1646552950642	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCCTGCCTCCTTATTCC	NA	False	NA	NA	False	ATTAAA	-12	NA	155034493	155074001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_155034674_155049731_155049902_155053599_155053695_155063523_155063587_155067174_155067301_155068964_155069072_155073086_155073182_155073882
transcript_45900.known	chr19	-	2217	10	FSM	ENSMUSG00000024826.16	ENSMUST00000236970.2	2217	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	234.668087116913	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTGCTGGACAGTTTGT	7071	False	NA	-26	True	AATAAA	-14	NA	5957100	5947414	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5948660_5951244_5951327_5952131_5952245_5952390_5952520_5952658_5952797_5954267_5954341_5954481_5954575_5955416_5955581_5956551_5956660_5957028
transcript_45901.known	chr19	-	2406	12	FSM	ENSMUSG00000024826.16	ENSMUST00000118623.2	2406	12	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	287.667249232497	987	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTGCTGGACAGTTTGT	1351	False	NA	-26	True	AATAAA	-14	NA	5962820	5947414	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5948660_5951244_5951327_5952131_5952245_5952390_5952520_5952658_5952797_5953758_5953801_5954267_5954347_5954481_5954575_5955416_5955581_5956551_5956660_5957028_5957190_5962768
transcript_45902.known	chr19	-	370	2	FSM	ENSMUSG00000024826.16	ENSMUST00000155937.2	370	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAGGACTTTTCGCAGCT	1336	False	NA	NA	False	AGTAAA	-16	NA	5962835	5961853	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5962157_5962768
transcript_45903.known	chr19	-	3411	2	FSM	ENSMUSG00000045664.6	ENSMUST00000055458.6	3411	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTTTTATGGTATTTGA	NA	False	NA	NA	False	AATAAA	-21	NA	5974844	5965663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5969022_5974791
transcript_45905.nic	chr19	-	2392	18	NIC	ENSMUSG00000024833.16	novel	2421	18	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_17	91.7598792094124	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAATCTTTTTTTTTTCC	1626	False	NA	0	True	AATAAA	-21	NA	6014230	5990569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_5991046_5992023_5992151_5992377_5992438_5993250_5993358_5993582_5993692_5996497_5996572_5997731_5997771_5998429_5998555_6000473_6000517_6001169_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011215_6013853
transcript_45906.known	chr19	-	2421	18	FSM	ENSMUSG00000024833.16	ENSMUST00000025752.15	2421	18	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_17	37.0964328301216	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAATCTTTTTTTTTTCC	1626	False	NA	0	True	AATAAA	-21	NA	6014230	5990569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5991046_5992023_5992151_5992377_5992438_5993250_5993358_5993582_5993692_5996497_5996572_5997731_5997771_5998429_5998555_6000473_6000517_6001169_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011244_6013853
transcript_45907.known	chr19	-	2391	18	FSM	ENSMUSG00000024833.16	ENSMUST00000165143.3	2391	18	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	92.2413338358681	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	1626	False	NA	NA	False	NA	NA	NA	6014230	5991134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5991581_5992023_5992151_5992377_5992438_5993250_5993358_5993582_5993692_5996497_5996572_5997731_5997771_5998429_5998555_6000473_6000517_6001169_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011244_6013853
transcript_4591.known	chr1	+	4589	8	FSM	ENSMUSG00000026470.15	ENSMUST00000027743.13	4589	8	0	0	0	0	multi-exon	TRUE	canonical	3	152	junction_7	29.3257565972304	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATGAGATTGGTCTGCTG	NA	False	NA	NA	False	TATAAA	-19	NA	155034460	155081405	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_155034674_155049731_155049902_155053599_155053695_155063523_155063587_155067174_155067301_155068964_155069072_155073086_155073182_155077685
transcript_45921.known	chr19	-	1703	13	FSM	ENSMUSG00000024833.16	ENSMUST00000238075.2	1703	13	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_12	34.8746764222345	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCGTTTCACATGCTCTTC	1659	False	NA	NA	False	GATAAA	-14	NA	6014197	5996303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_5996572_5997731_5997771_5998429_5998555_6000473_6000517_6001169_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011244_6013853
transcript_45922.known	chr19	-	1897	10	FSM	ENSMUSG00000037451.9	ENSMUST00000041827.8	1897	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	2.68512132746546	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCAGAGATGCTGGGTCTT	8724	False	NA	NA	False	AATAAA	-19	NA	6036171	6020261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6020582_6021426_6021634_6021746_6021856_6022883_6023099_6030387_6030504_6031657_6031782_6032860_6033030_6034825_6034981_6035607_6035712_6035793
transcript_45923.known	chr19	-	3062	22	FSM	ENSMUSG00000024942.20	ENSMUST00000025891.11	3062	22	0	0	0	0	multi-exon	TRUE	canonical	2	82	junction_11	40.0795693849892	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGTCTCTGGGTGTTAT	2594	False	NA	-6	True	AATAAA	-14	NA	6065236	6038572	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6039418_6040021_6040081_6040367_6040485_6041568_6041648_6041885_6041955_6042379_6042445_6043903_6043962_6044050_6044117_6044589_6044630_6044708_6044918_6046808_6046821_6047720_6047897_6057281_6057443_6057529_6057605_6058705_6058792_6059116_6059201_6061044_6061214_6061326_6061461_6063618_6063738_6064025_6064096_6064230_6064499_6065135
transcript_45924.known	chr19	-	3122	22	FSM	ENSMUSG00000024942.20	ENSMUST00000164843.10	3122	22	0	0	0	0	multi-exon	FALSE	canonical	2	39	junction_21	51.1945734794372	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCTGTCTCTGGGTGTTA	1903	False	NA	-7	True	AATAAA	-13	NA	6065927	6038573	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6039418_6040021_6040081_6040367_6040485_6041568_6041648_6041885_6041955_6042379_6042445_6043903_6043962_6044050_6044117_6044589_6044630_6044708_6044918_6046808_6046821_6047720_6047897_6057281_6057443_6057529_6057605_6058705_6058792_6059116_6059201_6061044_6061214_6061326_6061461_6063618_6063738_6064025_6064096_6064230_6064499_6065765
transcript_45929.known	chr19	+	3464	16	FSM	ENSMUSG00000024807.19	ENSMUST00000138532.8	3464	16	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_11	13.9593059362642	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTAGAACGTGTCACCTA	739	False	NA	13	True	AATAAA	-16	NA	6096605	6103742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6097159_6097946_6098096_6098304_6098398_6098484_6098638_6098724_6098774_6099179_6099284_6099800_6099928_6100021_6100122_6100199_6100266_6100354_6100472_6100551_6100716_6100970_6101100_6101184_6101341_6101422_6101610_6102357_6102510_6102577
transcript_45932.known	chr19	-	1311	3	FSM	ENSMUSG00000007338.11	ENSMUST00000235520.2	1311	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	445.5	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAACGGTGTTCAGAACCT	NA	False	NA	-15	True	ATTAAA	-15	NA	6107788	6103926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6105013_6105105_6105231_6107688
transcript_45936.known	chr19	-	1764	4	FSM	ENSMUSG00000007338.11	ENSMUST00000007482.8	1764	4	0	0	0	0	multi-exon	FALSE	canonical	3	907	junction_2	10.0332779621949	2663	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAGAAACTCCTGTAACAC	NA	False	NA	0	True	ATTAAA	-42	NA	6107815	6103651	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6105013_6105105_6105231_6106958_6107110_6107688
transcript_45954.known	chr19	+	450	5	FSM	ENSMUSG00000038274.14	ENSMUST00000237859.2	450	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	6192.96432958402	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTGCCATGCTAATAAAGC	1080	False	NA	-29	True	NA	NA	NA	6107971	6109516	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6108032_6108304_6108356_6108457_6108603_6109173_6109230_6109378
transcript_45959.known	chr19	+	503	5	FSM	ENSMUSG00000038274.14	ENSMUST00000236217.2	503	5	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	6188.20864628852	9891	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTATGTTTTCTTCATT	1107	False	NA	4	True	AATAAA	-16	NA	6107998	6109549	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6108032_6108257_6108356_6108457_6108603_6109173_6109230_6109378
transcript_45960.known	chr19	+	392	5	FSM	ENSMUSG00000038274.14	ENSMUST00000236336.2	392	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	5802.4913345476	1326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCCAGACTTCTTATGTT	1089	False	NA	-5	True	AATAAA	-7	NA	6107980	6109540	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6108032_6108272_6108356_6108562_6108603_6109173_6109230_6109378
transcript_45961.known	chr19	+	472	4	FSM	ENSMUSG00000038274.14	ENSMUST00000237840.2	472	4	0	0	0	0	multi-exon	FALSE	canonical	3	14010	junction_2	399.82023738453	6049	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTCTTATGTTTTCTTC	1361	False	NA	1	True	AATAAA	-13	NA	6108252	6109546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6108356_6108457_6108603_6109173_6109230_6109378
transcript_45962.known	chr19	+	1281	1	FSM	ENSMUSG00000075227.7	ENSMUST00000162726.5	1281	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	328	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCAGCAGTGCCTTTTCCG	2533	False	NA	11	True	AATAAA	-22	NA	6111221	6112502	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6111200_6112500
transcript_45969.known	chr19	-	1471	10	FSM	ENSMUSG00000024799.17	ENSMUST00000025713.12	1471	10	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_3	30.8704981223334	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTTTTTCTTCTATCC	9961	False	NA	0	True	AATAAA	-15	NA	6117872	6112850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6113104_6113353_6113477_6113556_6113638_6113851_6114021_6114108_6114229_6116340_6116445_6116528_6116724_6116997_6117053_6117152_6117350_6117698
transcript_4597.known	chr1	-	2433	13	FSM	ENSMUSG00000033684.15	ENSMUST00000194632.2	2433	13	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_7	5.99247212944893	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCAGAACGTGTTTGACTTG	NA	False	NA	-5	True	AATAAA	-19	NA	155688590	155653907	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_155654598_155655463_155655685_155657020_155657201_155658270_155658419_155659148_155659272_155662539_155662670_155665043_155665179_155666726_155666873_155667939_155668031_155670291_155670395_155671096_155671143_155679442_155679544_155688271
transcript_45973.known	chr19	-	2675	10	FSM	ENSMUSG00000024797.15	ENSMUST00000025711.13	2675	10	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_7	16.3026923475166	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAACAAGAGCAGCAGCTTT	987	False	NA	NA	False	TTTAAA	-7	NA	6127261	6117871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6118406_6118884_6118973_6119055_6119178_6119494_6119714_6119887_6120104_6120468_6121187_6121295_6121516_6121591_6121739_6126392_6126523_6126980
transcript_45979.nic	chr19	-	1301	9	NIC	ENSMUSG00000024799.17	novel	1471	10	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_8	79.8254932649965	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTTTTTCTTCTATCC	9934	False	NA	0	True	AATAAA	-15	NA	6117899	6112850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_6113104_6113353_6113477_6113556_6113638_6113851_6114021_6114108_6114229_6116340_6116445_6116528_6116724_6116997_6117053_6117698
transcript_4598.known	chr1	-	2664	2	FSM	ENSMUSG00000033684.15	ENSMUST00000140809.2	2664	2	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	155688584	155677192	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_155679544_155688271
transcript_4599.known	chr1	+	1189	1	FSM	ENSMUSG00000102833.2	ENSMUST00000193347.2	1189	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTTTCTCCAGCCTAGTT	NA	False	NA	NA	False	AATAAA	-17	NA	155849063	155850252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_155849100_155850300
transcript_45999.nic	chr19	-	1313	8	NIC	ENSMUSG00000024792.10	novel	1287	8	NA	NA	-58	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_7	201.730978669866	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCTGAAGCAGCTTTTTC	6632	False	NA	NA	False	AATAAA	-18	NA	6134781	6130791	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_6131245_6131876_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134091_6134381_6134492_6134675
transcript_4600.known	chr1	-	2723	11	FSM	ENSMUSG00000026466.17	ENSMUST00000136331.8	2723	11	0	0	0	0	multi-exon	FALSE	canonical	2	47	junction_4	24.0865107477194	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTGGGTTTTCTGCCACC	NA	False	NA	NA	False	NA	NA	NA	155912226	155881979	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_155883456_155889063_155889121_155893256_155893326_155893963_155894006_155895713_155895770_155898045_155898127_155898894_155898934_155906132_155906178_155907159_155907220_155909471_155909547_155911503
transcript_46002.known	chr19	-	1287	8	FSM	ENSMUSG00000024792.10	ENSMUST00000025707.9	1287	8	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_7	142.172789382555	495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCTGAAGCAGCTTTTTC	6440	False	NA	NA	False	AATAAA	-18	NA	6134973	6130791	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6131245_6131876_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134091_6134381_6134492_6134893
transcript_46005.known	chr19	-	784	7	FSM	ENSMUSG00000024799.17	ENSMUST00000161718.8	784	7	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_5	111.460007775584	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCCGTGCCTGGCAGGAG	9995	False	NA	NA	False	NA	NA	NA	6117838	6113007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6113104_6113353_6113477_6113556_6113638_6113851_6114021_6114108_6114229_6116997_6117053_6117698
transcript_4601.known	chr1	-	4234	10	FSM	ENSMUSG00000026466.17	ENSMUST00000097527.10	4234	10	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_4	20.1935083078146	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTGTATGTTATAAACTT	NA	False	NA	NA	False	AATAAA	-19	NA	155912173	155880359	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_155883456_155889063_155889121_155893256_155893326_155893963_155894006_155898045_155898127_155898894_155898934_155906132_155906178_155907159_155907220_155909471_155909547_155911503
transcript_46012.known	chr19	-	732	5	FSM	ENSMUSG00000024799.17	ENSMUST00000161528.2	732	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	104.193329920874	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTATGGTTTTGCTTTAA	9948	False	NA	-68	True	NA	NA	NA	6117885	6116216	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6116445_6116528_6116594_6116997_6117053_6117152_6117350_6117698
transcript_46015.known	chr19	-	1443	5	FSM	ENSMUSG00000024799.17	ENSMUST00000160354.8	1443	5	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_4	26.5988721565408	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAACAGGATTGAATGAA	4068	False	NA	NA	False	AATATA	-18	NA	6117806	6115556	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6116445_6116528_6116724_6116997_6117053_6117152_6117350_6117698
transcript_46024.known	chr19	-	718	4	FSM	ENSMUSG00000024799.17	ENSMUST00000160417.8	718	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	116.793264645983	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAGAGAGAGCGCGCGCA	9953	False	NA	-10	True	TATAAA	-13	NA	6117880	6116158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6116445_6116528_6116724_6116997_6117053_6117698
transcript_46029.known	chr19	-	840	2	FSM	ENSMUSG00000024797.15	ENSMUST00000160590.2	840	2	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_1	0	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTGGTAACTTTTGTTTC	1018	False	NA	1	True	ATTAAA	-20	NA	6127230	6125932	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6126523_6126980
transcript_46031.known	chr19	-	1498	10	FSM	ENSMUSG00000024799.17	ENSMUST00000113543.9	1498	10	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	72.9870612582197	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGTTTTTCTTCTATC	9961	False	NA	-1	True	AATAAA	-14	NA	6117872	6112851	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6113132_6113353_6113477_6113556_6113638_6113851_6114021_6114108_6114229_6116340_6116445_6116528_6116724_6116997_6117053_6117152_6117350_6117698
transcript_46032.known	chr19	+	1794	5	FSM	ENSMUSG00000024791.11	ENSMUST00000156961.8	1794	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	194.824921403808	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGCTTTTTATT	NA	False	NA	35	True	AATAAA	-20	NA	6135780	6141807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6135869_6136431_6136498_6136581_6136618_6140080_6140555_6140677
transcript_46036.known	chr19	+	2024	6	FSM	ENSMUSG00000024791.11	ENSMUST00000025704.3	2024	6	0	0	0	0	multi-exon	FALSE	canonical	3	368	junction_5	42.0218990527558	1085	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGCTTTTTATT	NA	False	NA	35	True	AATAAA	-20	NA	6135012	6141807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6135239_6135427_6135520_6136431_6136498_6136581_6136618_6140080_6140555_6140677
transcript_46037.known	chr19	+	1735	5	FSM	ENSMUSG00000024791.11	ENSMUST00000152528.2	1735	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	197.768014350147	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGCTTTTTATT	NA	False	NA	35	True	AATAAA	-20	NA	6135856	6141807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6135886_6136431_6136498_6136581_6136618_6140080_6140555_6140677
transcript_46038.known	chr19	-	1442	2	FSM	ENSMUSG00000024790.9	ENSMUST00000113533.3	1442	2	0	0	0	0	multi-exon	FALSE	canonical	3	283	junction_1	0	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAACAGGAACTTTTAGAC	NA	False	NA	-9	True	AATAAA	-25	NA	6168680	6166029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6166618_6167826
transcript_46040.known	chr19	-	1635	8	FSM	ENSMUSG00000024787.15	ENSMUST00000025702.14	1635	8	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_5	6.49018096662888	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGTCCATTTGCTTATTA	NA	False	NA	1	True	NA	NA	NA	6178334	6169428	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6169985_6170515_6170774_6171408_6171553_6171812_6171961_6172069_6172186_6173859_6173981_6174182_6174219_6178078
transcript_46043.known	chr19	+	1391	3	FSM	ENSMUSG00000039699.15	ENSMUST00000045042.8	1391	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTGTATGTATATGTACA	NA	False	NA	NA	False	AATAAA	-22	NA	6214468	6222506	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6214584_6216497_6216603_6221335
transcript_46045.known	chr19	-	1286	5	FSM	ENSMUSG00000024944.7	ENSMUST00000025893.7	1286	5	0	0	0	0	multi-exon	FALSE	canonical	3	648	junction_1	48.4890451545501	6316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGCTGAGCCATTTGTGA	NA	False	NA	-8	True	AATAAA	-18	NA	6191578	6184412	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6184832_6186008_6186090_6187507_6187671_6187759_6187871_6191066
transcript_46046.known	chr19	-	2305	4	FSM	ENSMUSG00000024944.7	ENSMUST00000134821.2	2305	4	0	0	0	0	multi-exon	FALSE	canonical	3	648	junction_1	55.8091987638836	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTTGTGAGTCACTGAC	NA	False	NA	1	True	AATAAA	-27	NA	6191170	6184403	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6184832_6186008_6187671_6187759_6187871_6191066
transcript_46049.known	chr19	+	1562	11	FSM	ENSMUSG00000024786.10	ENSMUST00000113528.2	1562	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	3.41906419945575	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTACTGCCCTGAGGTTTA	8117	False	NA	10	True	AATAAA	-26	NA	6234496	6274255	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6234613_6245693_6245811_6256247_6256294_6261633_6261710_6262157_6262284_6263026_6263059_6263328_6263427_6265175_6265240_6271702_6271776_6272677_6272787_6273550
transcript_46054.nnic	chr19	+	1576	10	NIC	ENSMUSG00000024786.10	novel	1562	11	NA	NA	-52	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	4.54062594260057	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTACTGCCCTGAGGTTTA	7986	False	NA	10	True	AATAAA	-26	NA	6234365	6274255	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_+_6234613_6256247_6256294_6261633_6261710_6262157_6262284_6263026_6263059_6263328_6263427_6265175_6265240_6271702_6271776_6272677_6272787_6273550
transcript_46059.known	chr19	+	1239	6	FSM	ENSMUSG00000024786.10	ENSMUST00000025699.9	1239	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	6.96850055607374	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAATTCTACTGCCCTGA	8038	False	NA	4	True	AATAAA	-20	NA	6234417	6274249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6234613_6245693_6245811_6256247_6256294_6271702_6271776_6272677_6272787_6273550
transcript_46063.known	chr19	-	2742	14	FSM	ENSMUSG00000024777.11	ENSMUST00000025695.10	2742	14	0	0	0	0	multi-exon	TRUE	canonical	3	82	junction_11	13.4199357135648	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTGCTTGCTTTATTGAG	NA	False	NA	0	True	AATAAA	-14	NA	6285902	6277794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6278562_6278971_6279074_6279251_6279380_6280185_6280306_6280415_6280467_6280531_6280586_6280936_6281046_6281145_6281206_6282299_6282431_6282557_6282651_6282796_6282899_6283806_6284004_6284662_6285130_6285541
transcript_46065.known	chr19	+	609	4	FSM	ENSMUSG00000024784.14	ENSMUST00000025698.14	609	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	2.05480466765633	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCGCTCTTTATTAAATC	239	False	NA	NA	False	AATAAA	-16	NA	6276409	6277798	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6276456_6276807_6276918_6277000_6277186_6277530
transcript_46066.known	chr19	+	3353	5	FSM	ENSMUSG00000024772.10	ENSMUST00000025684.4	3353	5	0	0	0	0	multi-exon	FALSE	canonical	3	357	junction_1	38.2687862363049	226	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCATGCTCCCTTGTCTTT	NA	False	NA	16	True	ATTAAA	-24	NA	6326754	6350126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6327409_6331247_6331346_6344243_6344657_6347562_6347728_6348103
transcript_46068.known	chr19	+	2639	10	FSM	ENSMUSG00000024947.18	ENSMUST00000079327.12	2639	10	0	0	0	0	multi-exon	TRUE	canonical	3	89	junction_1	99.9901229690114	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGATGTATGTATGTGTT	588	False	NA	21	True	GATAAA	-21	NA	6385042	6390919	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6385113_6385474_6385936_6386754_6386964_6387182_6387312_6387508_6387550_6387630_6387719_6388312_6388450_6388855_6388992_6389368_6389534_6389716
transcript_46069.known	chr19	+	1851	9	FSM	ENSMUSG00000024947.18	ENSMUST00000113503.10	1851	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	133.41423977597	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTGATTCTGTGGCAAGG	1036	False	NA	NA	False	NA	NA	NA	6385490	6390202	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6385951_6386754_6386964_6387182_6387312_6387508_6387550_6387630_6387719_6388312_6388450_6388855_6388992_6389368_6389534_6389716
transcript_4607.known	chr1	-	784	4	FSM	ENSMUSG00000026466.17	ENSMUST00000141980.2	784	4	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_3	11.7284080571728	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACACTTGTCAAGTGTTCT	NA	False	NA	NA	False	AATAAA	-41	NA	155911893	155905918	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_155906178_155907159_155907220_155909471_155909547_155911503
transcript_46072.known	chr19	+	4353	13	FSM	ENSMUSG00000024949.18	ENSMUST00000131252.8	4353	13	0	0	0	0	multi-exon	FALSE	canonical	3	714	junction_12	157.964724437663	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGCCATCCTCTGGTCT	602	False	NA	22	True	AATAAA	-14	NA	6413719	6428060	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424929_6425687
transcript_46074.known	chr19	+	2649	13	FSM	ENSMUSG00000024949.18	ENSMUST00000113487.8	2649	13	0	0	0	0	multi-exon	FALSE	canonical	3	364	junction_12	242.538814190407	553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCGGGTCCGTTTCTTTTC	834	False	NA	15	True	AATAAA	-15	NA	6413951	6427226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424929_6426325
transcript_4608.known	chr1	+	2491	3	FSM	ENSMUSG00000050565.17	ENSMUST00000111754.9	2491	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	87	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCAGCAGGTTTTATTGTT	NA	False	NA	3	True	AATAAA	-15	NA	155911471	155929275	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_155911667_155916820_155916881_155927039
transcript_46081.known	chr19	+	3221	12	FSM	ENSMUSG00000024949.18	ENSMUST00000113485.9	3221	12	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	431.203485933256	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCGTTTCTTTTCTTTTAA	834	False	NA	21	True	AATAAA	-21	NA	6413951	6427232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6414149_6415693_6415823_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424318_6424578_6424639_6424748_6424929_6425687
transcript_46088.known	chr19	-	649	3	FSM	ENSMUSG00000079467.9	ENSMUST00000129675.8	649	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	4	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAACACATAAAACCCTACA	NA	False	NA	NA	False	NA	NA	NA	6413565	6405551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6405871_6410689_6410812_6413357
transcript_46089.known	chr19	-	518	3	FSM	ENSMUSG00000079467.9	ENSMUST00000113496.2	518	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	3.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGCAGTGTGGTTTGTGA	NA	False	NA	NA	False	NA	NA	NA	6413789	6405627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6405871_6410689_6410812_6413636
transcript_46090.nnic	chr19	+	816	3	NNC	ENSMUSG00000024949.18	novel	2649	13	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	606	102	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCGGGTCCGTTTCTTTTC	590	False	NA	15	True	AATAAA	-15	NA	6413707	6427226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_6414149_6415693_6415742_6426899
transcript_46094.known	chr19	+	2874	20	FSM	ENSMUSG00000032648.15	ENSMUST00000035269.15	2874	20	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_8	7.04005162408672	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTCTCTGTTGCAAAATA	NA	False	NA	14	True	AATAAA	-24	NA	6434428	6448489	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6434752_6435714_6435817_6435895_6435975_6436053_6436158_6436403_6436536_6438092_6438205_6438296_6438380_6438766_6438911_6439189_6439283_6439485_6439633_6439802_6439967_6440360_6440476_6440969_6441072_6441362_6441511_6442708_6442768_6442877_6443020_6443745_6443954_6447607_6447743_6447895_6447963_6448074
transcript_4610.nnic	chr1	+	1954	3	NIC	ENSMUSG00000050565.17	novel	2491	3	NA	NA	-23	-731	combination_of_known_splicesites	FALSE	canonical	3	36	junction_1	105	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTTCTAATTTTCTCCT	NA	False	NA	10	True	AATAAA	-14	NA	155911448	155928544	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_155911838_155916820_155916881_155927039
transcript_46100.known	chr19	+	919	7	FSM	ENSMUSG00000032946.17	ENSMUST00000149205.2	919	7	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_2	53.7297765572209	945	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCATCAGCCTAAAACCCT	NA	False	NA	20	True	AATAAA	-22	NA	6458434	6465241	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6458601_6458868_6458985_6463114_6463257_6463457_6463495_6463894_6464072_6464821_6464885_6465023
transcript_46106.known	chr19	+	573	5	FSM	ENSMUSG00000032946.17	ENSMUST00000113475.8	573	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	121.807994401024	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAATGAGTGAGGGTCATG	NA	False	NA	9	True	NA	NA	NA	6449485	6453663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6449548_6451750_6451894_6452501_6452605_6453053_6453117_6453461
transcript_46108.known	chr19	+	429	5	FSM	ENSMUSG00000032946.17	ENSMUST00000113468.8	429	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	123.774745000747	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGATCAAGGAGCTGAAGG	NA	False	NA	NA	False	NA	NA	NA	6449775	6453515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6449842_6451750_6451894_6452501_6452605_6453053_6453117_6453461
transcript_46112.known	chr19	+	453	5	FSM	ENSMUSG00000032946.17	ENSMUST00000150713.8	453	5	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	119.445332684036	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGCTGAACAGATCAAGGAG	NA	False	NA	NA	False	NA	NA	NA	6449897	6453508	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6449995_6451750_6451894_6452501_6452605_6453053_6453117_6453461
transcript_46119.nic	chr19	+	1139	5	ISM	ENSMUSG00000032946.17	ENSMUST00000149205.2	919	7	4182	-4	4182	0	3prime_fragment	FALSE	canonical	3	149	junction_1	9.57535900110278	1314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAGCCTAAAACCCTCTGA	NA	False	NA	24	True	AATAAA	-26	NA	6462616	6465245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_+_6463257_6463457_6463495_6463894_6464072_6464821_6464885_6465023
transcript_4612.known	chr1	+	2529	2	FSM	ENSMUSG00000050565.17	ENSMUST00000065648.15	2529	2	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_1	0	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCTGGCTTTTGTCTCTT	NA	False	NA	10	True	AATAAA	-19	NA	155916662	155929482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_155916749_155927039
transcript_46129.known	chr19	+	535	4	FSM	ENSMUSG00000032946.17	ENSMUST00000113471.3	535	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	116.70761186258	1738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGAGGGTCATGTCACT	NA	False	NA	14	True	NA	NA	NA	6451731	6453668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6451894_6452501_6452605_6453053_6453117_6453461
transcript_46138.nic	chr19	+	497	3	ISM	ENSMUSG00000032946.17	ENSMUST00000113467.2	409	4	1007	-26	-65	0	3prime_fragment	FALSE	canonical	3	21	junction_1	111.5	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGAGGGTCATGTCACT	NA	False	NA	14	True	NA	NA	NA	6451659	6453668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_+_6451894_6453060_6453117_6453461
transcript_4614.known	chr1	+	2589	3	FSM	ENSMUSG00000050565.17	ENSMUST00000097526.3	2589	3	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_1	41.5	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCTGGCTTTTGTCTCTT	NA	False	NA	10	True	AATAAA	-19	NA	155916662	155929482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_155916749_155916820_155916881_155927039
transcript_46140.known	chr19	-	565	3	FSM	ENSMUSG00000084876.8	ENSMUST00000124118.8	565	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCCTGGGTTTTTGTCA	NA	False	NA	NA	False	AATAAA	-23	NA	6468636	6459429	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6459695_6467506_6467691_6468520
transcript_46142.known	chr19	+	442	3	FSM	ENSMUSG00000032946.17	ENSMUST00000133968.2	442	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	122	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGAGGGTCATGTCACT	NA	False	NA	14	True	NA	NA	NA	6451748	6453668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6451889_6453021_6453117_6453461
transcript_46146.nic	chr19	+	1071	4	ISM	ENSMUSG00000033768.18	ENSMUST00000235714.2	5001	21	85670	215	-3612	0	3prime_fragment	FALSE	canonical	1	1	junction_1	2.35702260395516	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAATATAACTACTACGTGC	NA	False	NA	NA	False	AAAAAG	-11	NA	6563622	6582326	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_+_6563836_6566952_6567279_6569278_6569358_6581873
transcript_46149.known	chr19	+	1933	4	FSM	ENSMUSG00000033768.18	ENSMUST00000140435.2	1933	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.29983164553722	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCTTGGCCCAGTTTTGA	NA	False	NA	NA	False	NA	NA	NA	6523138	6532726	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6523221_6523347_6523787_6531139_6531527_6531701
transcript_4615.known	chr1	-	3759	18	FSM	ENSMUSG00000060985.16	ENSMUST00000121146.10	3759	18	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_17	4.02242846994794	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTGTGATCTATATTTA	NA	False	NA	NA	False	GATAAA	-19	NA	156131234	156082865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_156083416_156087300_156087506_156090398_156090543_156090975_156091159_156094782_156094942_156098135_156098271_156098768_156098970_156104131_156104199_156104867_156105081_156111834_156112056_156112955_156113165_156115797_156115952_156120896_156120954_156122004_156122089_156128166_156128361_156129083_156129477_156129936_156130173_156130880
transcript_46150.known	chr19	-	716	2	FSM	ENSMUSG00000052188.7	ENSMUST00000149574.2	716	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAACAACTTTTCCGTAC	NA	False	NA	NA	False	NA	NA	NA	6582041	6580740	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6581294_6581878
transcript_46151.nnic	chr19	-	1217	3	Antisense	novelGene_ENSMUSG00000085285.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAATCCTCTCTCTTCCTG	NA	False	NA	NA	False	NA	NA	NA	6698273	6695131	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr19_-_6695264_6695544_6695755_6697398
transcript_46153.known	chr19	-	3140	17	FSM	ENSMUSG00000118668.1	ENSMUST00000239527.1	3140	17	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_16	8.80961832317383	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGGATCTGTGGTTTGTG	NA	False	NA	-6	True	AATAAA	-18	NA	6818004	6806577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6807508_6807682_6807847_6807954_6808115_6808358_6808554_6808641_6808816_6809135_6809230_6809318_6809453_6809623_6809753_6812468_6812634_6814694_6814846_6814947_6815052_6815123_6815205_6815422_6815531_6816619_6816736_6816827_6817047_6817701_6817774_6817860
transcript_46155.nic	chr19	-	1780	5	ISM	ENSMUSG00000118668.1	ENSMUST00000239527.1	3140	17	9032	0	7981	0	3prime_fragment	FALSE	canonical	3	46	junction_1	7.08431365765238	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGGATCTGTGGTTTGTG	NA	False	NA	-6	True	AATAAA	-18	NA	6808972	6806577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_-_6807508_6807682_6807847_6807954_6808115_6808358_6808554_6808641
transcript_46160.known	chr19	+	957	5	FSM	ENSMUSG00000038812.17	ENSMUST00000088257.14	957	5	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_1	358.400875417458	6195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATACATTAAAATAGAGTCT	9265	False	NA	37	True	ATTAAA	-37	NA	6887065	6888417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6887224_6887321_6887631_6887730_6887833_6887951_6888042_6888119
transcript_46163.known	chr19	+	985	4	FSM	ENSMUSG00000038812.17	ENSMUST00000116551.10	985	4	0	0	0	0	multi-exon	FALSE	canonical	3	803	junction_1	23.6971634495683	6782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGTTTCTCTTTGCAGCAA	9314	False	NA	16	True	ATTAAA	-16	NA	6887114	6888396	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6887631_6887730_6887833_6887951_6888042_6888119
transcript_46168.known	chr19	+	646	3	FSM	ENSMUSG00000038812.17	ENSMUST00000174786.2	646	3	0	0	0	0	multi-exon	FALSE	canonical	3	803	junction_1	28.5	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGTTTCTCTTTGCAGCAA	9731	False	NA	16	True	ATTAAA	-16	NA	6887531	6888396	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6887631_6887730_6887833_6887951
transcript_46169.known	chr19	-	501	5	FSM	ENSMUSG00000024953.18	ENSMUST00000173091.2	501	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	217.984374440004	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCTGGCCAGATGTCCTC	NA	False	NA	NA	False	NA	NA	NA	6886985	6884213	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6884320_6884433_6884496_6884609_6884649_6885349_6885485_6886826
transcript_46171.known	chr19	-	1763	7	FSM	ENSMUSG00000024957.10	ENSMUST00000025908.8	1763	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.25830573921179	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGTGTGCGAGTGCTTTT	9936	False	NA	NA	False	AATAAA	-43	NA	6911883	6903029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6903744_6904458_6904599_6904985_6905173_6905361_6905523_6905649_6905777_6910070_6910337_6911715
transcript_46174.known	chr19	-	691	6	FSM	ENSMUSG00000050623.6	ENSMUST00000236318.2	691	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	20.1037309970065	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCAGAGTCAGTGCGTGGC	7433	False	NA	-6	True	ATTAAA	-15	NA	6902705	6899797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6900029_6900668_6900736_6900890_6900968_6902161_6902281_6902366_6902518_6902659
transcript_46177.known	chr19	-	806	5	FSM	ENSMUSG00000050623.6	ENSMUST00000237380.2	806	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_4	16.5529453572468	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTGCGTGGCTGCTTGC	7411	False	NA	1	True	ATTAAA	-22	NA	6902727	6899790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6900029_6900668_6900736_6900890_6900968_6902161_6902518_6902659
transcript_4618.known	chr1	+	445	1	FSM	ENSMUSG00000078193.3	ENSMUST00000102782.4	445	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	92811	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-18	NA	156193609	156194054	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_156193600_156194100
transcript_46184.nnic	chr19	-	941	3	NNC	ENSMUSG00000024957.10	novel	600	2	NA	NA	224	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	0.5	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATTGTGTTAAGTTAGTT	NA	False	NA	NA	False	TTTAAA	-4	NA	6911657	6906084	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_6906560_6910070_6910337_6911457
transcript_46185.nic	chr19	-	1162	3	NIC	ENSMUSG00000024957.10	novel	600	2	NA	NA	-253	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	1.5	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATTGTGTTAAGTTAGTT	9683	False	NA	NA	False	TTTAAA	-4	NA	6912136	6906084	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_6906560_6910070_6910337_6911715
transcript_46186.known	chr19	-	784	5	FSM	ENSMUSG00000050623.6	ENSMUST00000057716.6	784	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_4	4.76969600708473	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTGCGTGGCTGCTTGC	7390	False	NA	1	True	ATTAAA	-22	NA	6902748	6899790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6900029_6900668_6900736_6900890_6900968_6902161_6902475_6902659
transcript_46187.known	chr19	-	1064	3	FSM	ENSMUSG00000050623.6	ENSMUST00000237563.2	1064	3	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_2	2	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCAGTGCGTGGCTGCTTG	7449	False	NA	0	True	ATTAAA	-21	NA	6902689	6899791	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6900029_6900668_6900968_6902161
transcript_46189.known	chr19	-	1858	7	FSM	ENSMUSG00000024958.14	ENSMUST00000166115.9	1858	7	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	2.47767812455308	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTCTGTTCCTTCTCACC	6813	False	NA	1	True	AATAAA	-32	NA	6918561	6915424	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6915898_6916123_6916243_6916379_6916509_6916628_6916779_6916896_6917123_6917719_6917770_6917850
transcript_4619.known	chr1	-	8371	16	FSM	ENSMUSG00000026600.13	ENSMUST00000189661.7	8371	16	0	0	0	0	multi-exon	FALSE	canonical	2	51	junction_13	9.26258903091115	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGTGTGTGTAGTGTTAT	1699	False	NA	NA	False	AATAAA	-21	NA	156301901	156252094	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_156258686_156259773_156259920_156260416_156260553_156261722_156261822_156263362_156263461_156265273_156265404_156266857_156266904_156267270_156267353_156268076_156268156_156268798_156269082_156269950_156270059_156272124_156272185_156274110_156274263_156285515_156285575_156294250_156294369_156301717
transcript_46193.known	chr19	+	1452	4	FSM	ENSMUSG00000024959.15	ENSMUST00000025910.13	1452	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	43.6526695123626	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTATCCTTCGTTTGGG	8681	False	NA	16	True	AATAAA	-21	NA	6919228	6929267	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6919809_6920234_6920415_6928007_6928199_6928766
transcript_46196.known	chr19	+	990	4	FSM	ENSMUSG00000024959.15	ENSMUST00000113423.10	990	4	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	15.9234278833282	756	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCGCGCCTCTATCCTTCG	9321	False	NA	10	True	AATAAA	-15	NA	6919868	6929261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6919993_6920234_6920415_6928007_6928199_6928766
transcript_46197.known	chr19	+	1169	3	FSM	ENSMUSG00000024959.15	ENSMUST00000235240.2	1169	3	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	2.5	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCGCGCCTCTATCCTTCG	9384	False	NA	10	True	AATAAA	-15	NA	6919931	6929261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6920415_6928007_6928199_6928766
transcript_46198.known	chr19	+	668	2	FSM	ENSMUSG00000024959.15	ENSMUST00000145463.2	668	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAGCCTGCGCATGTGCC	1022	False	NA	-9	True	NA	NA	NA	6928134	6929242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6928199_6928638
transcript_46199.known	chr19	-	4257	31	FSM	ENSMUSG00000024960.10	ENSMUST00000025912.10	4257	31	0	0	0	0	multi-exon	FALSE	canonical	3	577	junction_24	50.7714377272191	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGTGTACAGTGTAGTTT	4311	False	NA	-8	True	AATAAA	-16	NA	6947182	6931080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6931668_6931748_6931836_6932072_6932131_6932208_6932299_6932391_6932469_6932574_6932726_6933081_6933275_6933390_6933427_6933514_6933669_6934994_6935087_6935265_6935371_6935453_6935554_6936163_6936326_6936418_6936574_6937155_6937281_6937500_6937586_6937659_6937757_6939242_6939452_6940060_6940248_6940329_6940415_6940581_6940823_6941740_6941888_6941964_6942132_6942664_6942766_6942876_6942953_6943053_6943108_6943188_6943269_6943510_6943652_6943753_6943823_6943999_6944078_6946914
transcript_46205.known	chr19	+	999	4	FSM	ENSMUSG00000056612.8	ENSMUST00000070850.8	999	4	0	0	0	0	multi-exon	FALSE	canonical	3	3100	junction_3	78.5295415043848	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGCTTGGCTGGTCTTTTA	1580	False	NA	NA	False	AATAAA	-29	NA	6952335	6954692	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6952875_6953911_6953996_6954225_6954259_6954349
transcript_46207.known	chr19	+	605	4	FSM	ENSMUSG00000056612.8	ENSMUST00000236218.2	605	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	1483.18268897964	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAACAGCAATACCGGGGGA	1870	False	NA	NA	False	NA	NA	NA	6952625	6954477	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6952986_6953911_6953996_6954225_6954259_6954349
transcript_46209.known	chr19	+	686	3	FSM	ENSMUSG00000056612.8	ENSMUST00000237084.2	686	3	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_2	1484	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTTTTTATATTGACTC	1853	False	NA	NA	False	ATTAAA	-14	NA	6952608	6954618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6952875_6953911_6953996_6954282
transcript_46222.known	chr19	-	642	6	FSM	ENSMUSG00000056629.17	ENSMUST00000070878.9	642	6	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_5	200.859752065963	4378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTGAGTCTGTATTTCT	NA	False	NA	-3	True	TTTAAA	-35	NA	6957808	6955108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6955303_6955378_6955415_6955757_6955805_6955925_6956039_6956340_6956546_6957761
transcript_4623.known	chr1	-	2925	15	FSM	ENSMUSG00000026600.13	ENSMUST00000051396.13	2925	15	0	0	0	0	multi-exon	FALSE	canonical	2	51	junction_13	9.39387555587063	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACATGTACTCATATGT	9226	False	NA	-6	True	AATAAA	-20	NA	156294374	156257362	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_156258686_156259773_156259920_156260416_156260553_156261722_156261822_156263362_156263461_156265273_156265404_156266857_156266904_156267270_156267353_156268076_156268156_156268798_156269082_156269950_156270059_156272124_156272185_156274110_156274263_156285515_156285575_156294250
transcript_46239.known	chr19	-	664	6	FSM	ENSMUSG00000056629.17	ENSMUST00000177752.9	664	6	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_5	164.60571071503	3948	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAGAGTGAGTCTGTATT	NA	False	NA	-6	True	TTTAAA	-32	NA	6957869	6955111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6955303_6955378_6955415_6955757_6955805_6955925_6956039_6956340_6956510_6957761
transcript_4624.nnic	chr1	+	444	2	Genic_Genomic	ENSMUSG00000101523.3	novel	2633	1	NA	NA	-47	-2182	multi-exon	FALSE	canonical	0	0	junction_1	0	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAGCGTGAAATAAAGATT	NA	False	NA	NA	False	AGTAAA	-12	NA	156351534	156352032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr1_+_156351693_156351746
transcript_46240.known	chr19	-	1158	7	FSM	ENSMUSG00000024962.14	ENSMUST00000130048.8	1158	7	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_2	60.459352736639	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTGCTTCTGTCATTGT	4780	False	NA	-1	True	GATAAA	-17	NA	6964997	6959840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6960236_6962728_6962864_6963172_6963209_6963388_6963463_6963657_6963855_6964141_6964185_6964719
transcript_46241.known	chr19	-	1281	7	FSM	ENSMUSG00000024962.14	ENSMUST00000025914.7	1281	7	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_2	52.2323867176508	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTGCTTCTGTCATTGT	4758	False	NA	-1	True	GATAAA	-17	NA	6965019	6959840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6960236_6962728_6962965_6963172_6963209_6963388_6963463_6963657_6963855_6964141_6964185_6964719
transcript_46245.nnic	chr19	-	947	7	NNC	ENSMUSG00000024963.13	novel	1074	6	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_6	72.0819364026491	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9928	False	NA	-4	True	AATAAA	-17	NA	6969957	6965278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_6965477_6965556_6965644_6966790_6966956_6967048_6967234_6968085_6968180_6969526_6969641_6969853
transcript_46246.nnic	chr19	-	922	7	NNC	ENSMUSG00000024963.13	novel	1074	6	NA	NA	-55	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_6	60.0194412947449	330	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9890	False	NA	-4	True	AATAAA	-17	NA	6969995	6965278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_6965477_6965556_6965644_6966790_6966956_6967048_6967234_6968085_6968180_6969526_6969641_6969916
transcript_4625.nnic	chr1	+	1095	2	Genic_Genomic	ENSMUSG00000101523.3	novel	2633	1	NA	NA	-47	134163	multi-exon	FALSE	canonical	0	0	junction_1	0	85	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTTTTTTTCAGAAT	NA	False	NA	NA	False	NA	NA	NA	156351534	156488377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr1_+_156352424_156488171
transcript_46253.known	chr19	-	840	6	FSM	ENSMUSG00000024963.13	ENSMUST00000179118.2	840	6	0	0	0	0	multi-exon	TRUE	canonical	3	37	junction_3	69.5097115516961	680	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9507	False	NA	-4	True	AATAAA	-17	NA	6969640	6965278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6965477_6965556_6965644_6966790_6966953_6967048_6967234_6968085_6968180_6969526
transcript_46255.nnic	chr19	-	837	6	NIC	ENSMUSG00000024963.13	novel	1074	6	NA	NA	-84	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_5	77.5035483058679	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9861	False	NA	-4	True	AATAAA	-17	NA	6970024	6965278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_6965477_6965556_6965644_6966790_6966956_6967048_6967234_6968085_6968180_6969916
transcript_46260.nic	chr19	-	1177	5	NIC	ENSMUSG00000024963.13	novel	1074	6	NA	NA	-10	0	intron_retention	FALSE	canonical	3	188	junction_2	20.6942020865749	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	10004	False	NA	-4	True	AATAAA	-17	NA	6969881	6965278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_6965477_6965556_6965644_6966790_6967234_6968085_6968180_6969526
transcript_46263.nnic	chr19	-	916	5	NIC	ENSMUSG00000024963.13	novel	1074	6	NA	NA	-7	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_2	88.1061149977685	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	10007	False	NA	-4	True	AATAAA	-17	NA	6969878	6965278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_6965477_6965556_6965644_6967048_6967234_6968085_6968180_6969526
transcript_4627.known	chr1	+	2633	1	FSM	ENSMUSG00000101523.3	ENSMUST00000190422.3	2633	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1068	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTTGGTTTTATTTATCAA	NA	False	NA	NA	False	AATAAA	-1	NA	156351581	156354214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_156351600_156354200
transcript_46272.known	chr19	-	1073	6	FSM	ENSMUSG00000037349.10	ENSMUST00000180765.2	1073	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	58.0427428710946	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGTTAGCTTCTGCTGCT	6965	False	NA	-3	True	AATAAA	-17	NA	6973485	6970385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6970571_6970800_6970895_6971029_6971128_6972038_6972138_6972609_6973104_6973382
transcript_46273.known	chr19	-	1000	6	FSM	ENSMUSG00000037349.10	ENSMUST00000041686.10	1000	6	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_2	17.04582060213	335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGTTAGCTTCTGCTGCT	7045	False	NA	-3	True	AATAAA	-17	NA	6973405	6970385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6970571_6970800_6970895_6971029_6971128_6972038_6972138_6972609_6973104_6973375
transcript_46274.nnic	chr19	+	1074	8	NNC	ENSMUSG00000047656.10	novel	1103	7	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	12.4654624904991	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATTTGTGGTTCCTCATC	NA	False	NA	36	True	ATTAAA	-42	NA	6973487	6976412	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_6973745_6973823_6973893_6974063_6974146_6975300_6975471_6975559_6975735_6975876_6975934_6976025_6976137_6976259
transcript_46278.known	chr19	+	1103	7	FSM	ENSMUSG00000047656.10	ENSMUST00000088223.7	1103	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	9.59166304662544	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTGTGGTTCCTCATCCG	NA	False	NA	38	True	ATTAAA	-44	NA	6973539	6976414	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6973893_6974063_6974146_6975300_6975471_6975559_6975735_6975876_6975934_6976025_6976137_6976259
transcript_46279.nnic	chr19	+	1114	7	NNC	ENSMUSG00000047656.10	novel	1103	7	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_5	14.8174071805952	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATTTGTGGTTCCTCATC	NA	False	NA	36	True	ATTAAA	-42	NA	6973478	6976412	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_6973893_6974063_6974146_6975300_6975471_6975559_6975735_6975876_6975934_6976073_6976137_6976259
transcript_4628.known	chr1	-	3355	7	FSM	ENSMUSG00000060519.12	ENSMUST00000150557.8	3355	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	24.5995709086335	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGATGGTTCTTCCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	156501926	156481186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_156483514_156484041_156484167_156494168_156494348_156496683_156496754_156496940_156497207_156501099_156501217_156501655
transcript_46281.nnic	chr19	+	904	7	NNC	ENSMUSG00000047656.10	novel	972	6	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	15.5848929700813	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATTTGTGGTTCCTCATC	NA	False	NA	36	True	ATTAAA	-42	NA	6973487	6976412	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_6973745_6973823_6973893_6974063_6974146_6975559_6975735_6975876_6975934_6976025_6976137_6976259
transcript_46282.known	chr19	+	972	6	FSM	ENSMUSG00000047656.10	ENSMUST00000237234.2	972	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	13.8650640099496	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATTTGTGGTTCCTCATC	NA	False	NA	36	True	ATTAAA	-42	NA	6973498	6976412	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_6973893_6974063_6974146_6975559_6975735_6975876_6975934_6976025_6976137_6976259
transcript_46286.nnic	chr19	-	794	3	NNC	ENSMUSG00000024965.10	novel	2988	14	NA	NA	19369	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	13.5	34	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATCTTTCTTCTTCCTCCT	8108	False	NA	-8	True	AATAAA	-17	NA	6977344	6976346	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_6976889_6977006_6977149_6977234
transcript_46287.nnic	chr19	-	810	3	NNC	ENSMUSG00000024965.10	novel	2988	14	NA	NA	19329	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	9.5	113	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATCTTTCTTCTTCCTCCT	8068	False	NA	-8	True	AATAAA	-17	NA	6977384	6976346	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_6976889_6977006_6977149_6977258
transcript_46288.known	chr19	-	2108	14	FSM	ENSMUSG00000024966.10	ENSMUST00000025918.9	2108	14	0	0	0	0	multi-exon	FALSE	canonical	3	2912	junction_9	209.620169317304	13428	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGGTCTCCAGTGACTTT	3763	False	NA	-8	True	AATAAA	-29	NA	7017335	6998069	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
transcript_46289.known	chr19	+	1228	11	FSM	ENSMUSG00000036278.8	ENSMUST00000040261.7	1228	11	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_9	10.4383906805599	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCACTGTCTGGGTCTGGC	8532	False	NA	6	True	AATAAA	-16	NA	7034177	7175422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_7034551_7042832_7042935_7043454_7043572_7162940_7162971_7173778_7173896_7174153_7174276_7174369_7174401_7174515_7174590_7174896_7174979_7175066_7175102_7175277
transcript_4630.known	chr1	-	3285	6	FSM	ENSMUSG00000060519.12	ENSMUST00000079625.11	3285	6	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_5	7.96492310069595	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGATGGTTCTTCCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	156501926	156481186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_156483514_156484041_156484167_156494168_156494348_156496940_156497207_156501099_156501217_156501655
transcript_46302.known	chr19	-	1713	7	FSM	ENSMUSG00000024767.12	ENSMUST00000025679.11	1713	7	0	0	0	0	multi-exon	TRUE	canonical	3	1089	junction_1	76.373351955305	1547	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCTGGCCCATGCATC	NA	False	NA	2	True	AATAAA	-26	NA	7183681	7175566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_7176605_7176736_7176932_7177027_7177113_7177307_7177427_7181422_7181522_7181754_7181817_7183566
transcript_46303.known	chr19	-	550	2	FSM	ENSMUSG00000035885.6	ENSMUST00000039758.6	550	2	0	0	0	0	multi-exon	FALSE	canonical	3	12296	junction_1	0	134317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATCATGTCCTTCTGCAC	7366	False	NA	NA	False	AATAAA	-26	NA	7194981	7192517	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_7192850_7194763
transcript_46317.known	chr19	-	504	3	FSM	ENSMUSG00000035885.6	ENSMUST00000237087.2	504	3	0	0	0	0	multi-exon	FALSE	canonical	1	33	junction_2	91	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTTTGTAACAATAAAGTC	7439	False	NA	NA	False	NA	NA	NA	7194908	7192559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_7192850_7193845_7193915_7194763
transcript_46319.known	chr19	-	3231	8	FSM	ENSMUSG00000024764.11	ENSMUST00000025675.11	3231	8	0	0	0	0	multi-exon	TRUE	canonical	3	441	junction_1	30.7431757816732	144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCTGGGATGGCATCCAG	NA	False	NA	-20	True	AATAAA	-16	NA	7218548	7203037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_7205457_7205716_7205795_7207086_7207171_7207312_7207472_7207552_7207649_7211468_7211522_7212427_7212524_7218302
transcript_46324.nic	chr19	+	2351	13	NIC	ENSMUSG00000024968.15	novel	2823	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_1	300.802676184904	625	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTCTTCCATGTGTGCTG	NA	False	NA	22	True	AATAAA	-17	NA	7244689	7252590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_+_7244790_7246215_7246454_7247129_7247187_7247465_7247547_7247918_7247972_7248062_7248225_7248334_7248460_7248557_7248628_7248703_7248920_7250464_7250543_7251197_7251256_7251384_7251615_7251707
transcript_46328.known	chr19	+	439	4	FSM	ENSMUSG00000024968.15	ENSMUST00000140442.8	439	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	511.709118760084	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGGTCCCCCAACCACTG	NA	False	NA	NA	False	NA	NA	NA	7244689	7247509	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_7244790_7246215_7246454_7247129_7247187_7247465
transcript_46334.nic	chr19	-	2722	18	NIC	ENSMUSG00000024969.16	novel	3018	18	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	83.0892712064523	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAGAAAAAAA	3840	False	NA	NA	False	AAGAAA	-13	NA	7319245	7254123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_7254816_7255406_7255452_7258362_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7319131
transcript_46339.known	chr19	-	3018	18	FSM	ENSMUSG00000024969.16	ENSMUST00000025921.15	3018	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	103.565869249268	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAGAAAAAAA	3138	False	NA	NA	False	AAGAAA	-13	NA	7272812	7254123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_7254816_7255406_7255452_7258362_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7272402
transcript_46340.known	chr19	-	720	8	FSM	ENSMUSG00000024969.16	ENSMUST00000171393.8	720	8	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_7	60.759143092935	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCCTGAGGTGGATGTCT	3860	False	NA	NA	False	AAAAAG	-6	NA	7319225	7263184	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7319131
transcript_46341.known	chr19	-	3152	6	FSM	ENSMUSG00000024970.6	ENSMUST00000025924.4	3152	6	0	0	0	0	multi-exon	FALSE	canonical	3	309	junction_2	10.2293694820355	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGGTCTCTAGGTGCTT	NA	False	NA	NA	False	NA	NA	NA	7360359	7333827	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_7335853_7351021_7351220_7351386_7351513_7351660_7351811_7351885_7352216_7360036
transcript_46343.known	chr19	-	2898	8	FSM	ENSMUSG00000024758.16	ENSMUST00000025667.14	2898	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	306.474621914362	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCAGTCTGCAACTTTAT	8960	False	NA	-18	True	AATAAA	-17	NA	7460646	7403265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_7405241_7407115_7407175_7408350_7408398_7409330_7409401_7409816_7409956_7412295_7412504_7445175_7445233_7460303
transcript_46344.known	chr19	-	2762	7	FSM	ENSMUSG00000024758.16	ENSMUST00000088169.7	2762	7	0	0	0	0	multi-exon	FALSE	canonical	3	635	junction_1	35.2735343029618	1401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCAGTCTGCAACTTTAT	9039	False	NA	-18	True	AATAAA	-17	NA	7460567	7403265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_7405241_7407115_7407175_7408350_7408398_7409330_7409401_7409816_7409956_7412295_7412504_7460303
transcript_46345.known	chr19	+	4368	13	FSM	ENSMUSG00000024759.15	ENSMUST00000025668.9	4368	13	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_6	6.18409698788397	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGAAATAGTTCTGAGGAG	NA	False	NA	NA	False	NA	NA	NA	7471802	7513965	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_7472027_7486712_7486928_7487347_7487492_7494242_7494348_7495910_7495962_7498151_7498209_7498474_7498568_7499433_7499573_7506306_7506435_7506972_7507030_7507884_7507957_7509380_7509813_7511314
transcript_46347.known	chr19	+	7540	13	FSM	ENSMUSG00000024759.15	ENSMUST00000170373.9	7540	13	0	0	0	0	multi-exon	TRUE	canonical	2	6	junction_1	12.0355376559033	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGGTCCTCATTCTTTAA	NA	False	NA	NA	False	AGTAAA	-19	NA	7471404	7517039	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_7471727_7486712_7486928_7487347_7487492_7494242_7494348_7495910_7495962_7498151_7498209_7498474_7498568_7499433_7499573_7506306_7506435_7506972_7507030_7507884_7507957_7509380_7509813_7511314
transcript_4635.known	chr1	+	333	1	FSM	ENSMUSG00000046057.5	ENSMUST00000121352.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTACTCATCTGAATAAT	5163	False	NA	NA	False	NA	NA	NA	156621081	156621414	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_156621100_156621400
transcript_46352.known	chr19	+	3523	5	FSM	ENSMUSG00000060675.14	ENSMUST00000025925.11	3523	5	0	0	0	0	multi-exon	TRUE	canonical	3	141	junction_1	31.8825971338597	1476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTTGCTGTAGTCATGG	NA	False	NA	NA	False	NA	NA	NA	7534823	7565910	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_7534930_7535296_7535361_7552301_7552405_7556318_7556588_7562929
transcript_46354.known	chr19	+	1901	5	FSM	ENSMUSG00000060675.14	ENSMUST00000136756.2	1901	5	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	71.8135606971274	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAGAAGGAGAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	7534849	7564076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_7535168_7535296_7535361_7552301_7552405_7556318_7556588_7562929
transcript_46357.known	chr19	-	2470	10	FSM	ENSMUSG00000024972.17	ENSMUST00000159983.8	2470	10	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_8	5.03322295684717	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTACTCATATGTTAGTGGT	NA	False	NA	NA	False	ATTAAA	-17	NA	7584558	7574024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_7575537_7576124_7576276_7578012_7578102_7578610_7578638_7579407_7579447_7580373_7580494_7581333_7581548_7581668_7581758_7584026_7584189_7584491
transcript_4636.known	chr1	-	2958	20	FSM	ENSMUSG00000026594.15	ENSMUST00000191605.7	2958	20	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_19	72.7811198920598	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAACCTTTTCTTGTATG	NA	False	NA	-37	True	AATAAA	-32	NA	156767178	156635691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_156636764_156639014_156639107_156641007_156641114_156645310_156645404_156647382_156647489_156648956_156649035_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735289_156767058
transcript_46364.known	chr19	-	2813	10	FSM	ENSMUSG00000010095.14	ENSMUST00000170157.8	2813	10	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_9	923.220423635268	630	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATATGGATGAGTGATCAAA	9029	False	NA	NA	False	AATAAA	-17	NA	8700733	8684245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705_8691117_8700347
transcript_46372.known	chr19	-	1393	8	FSM	ENSMUSG00000010095.14	ENSMUST00000206598.2	1393	8	0	0	0	0	multi-exon	FALSE	canonical	3	2940	junction_7	103.964868477534	3178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCACCCCTGCCTCATGA	NA	False	NA	12	True	AATAAA	-2	NA	8690349	8684950	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093
transcript_46373.known	chr19	-	1819	9	FSM	ENSMUSG00000010095.14	ENSMUST00000010239.6	1819	9	0	0	0	0	multi-exon	FALSE	canonical	3	2610	junction_8	198.183902915953	2188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATACTGGGTGTTTTTGTCT	NA	False	NA	-18	True	TTTAAA	-26	NA	8691243	8684980	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705
transcript_46374.known	chr19	-	812	2	FSM	ENSMUSG00000010095.14	ENSMUST00000206895.2	812	2	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_1	0	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGCTAGCCGGACCCCTAC	9200	False	NA	22	True	NA	NA	NA	8700562	8690519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_8691117_8700347
transcript_46380.known	chr19	+	75	1	FSM	ENSMUSG00000065392.3	ENSMUST00000083458.3	75	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATCTGTGGCAGGTATTT	NA	False	NA	19	True	AAAACA	-18	NA	8701614	8701689	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8701600_8701700
transcript_46381.known	chr19	+	605	10	FSM	ENSMUSG00000108414.2	ENSMUST00000206155.2	605	10	0	0	0	0	multi-exon	FALSE	canonical	3	444	junction_1	203.637719952995	3309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8700838	8703807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8700871_8701504_8701554_8701766_8701848_8702035_8702086_8702377_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
transcript_46382.known	chr19	+	709	9	FSM	ENSMUSG00000108414.2	ENSMUST00000205909.2	709	9	0	0	0	0	multi-exon	FALSE	canonical	3	781	junction_1	124.260814418706	2392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8701368	8703807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8701554_8701766_8701848_8702035_8702086_8702377_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
transcript_46383.known	chr19	+	744	8	FSM	ENSMUSG00000108414.2	ENSMUST00000206135.2	744	8	0	0	0	0	multi-exon	FALSE	canonical	3	781	junction_1	116.047316176794	513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8701521	8703807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8701554_8701766_8702086_8702377_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
transcript_46384.known	chr19	+	510	6	FSM	ENSMUSG00000108414.2	ENSMUST00000205852.2	510	6	0	0	0	0	multi-exon	FALSE	canonical	3	951	junction_1	74.1145060025364	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8702260	8703807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
transcript_46385.known	chr19	+	495	9	FSM	ENSMUSG00000108414.2	ENSMUST00000205825.2	495	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	343.013825340904	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCTTACCACATTGTTAAC	NA	False	NA	31	True	AATAAA	-39	NA	8701510	8703709	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8701554_8701740_8701848_8702035_8702086_8702377_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
transcript_46391.known	chr19	+	1204	11	FSM	ENSMUSG00000042729.12	ENSMUST00000049424.11	1204	11	0	0	0	0	multi-exon	FALSE	canonical	3	1012	junction_8	78.6635875103596	3964	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGACCTTTTGTGATGG	975	False	NA	28	True	AATAAA	-21	NA	8713202	8717988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8713270_8713350_8713458_8713539_8713662_8715017_8715094_8715211_8715359_8715516_8715619_8716629_8716731_8716810_8716867_8717182_8717329_8717459_8717517_8717765
transcript_46392.known	chr19	+	1078	11	FSM	ENSMUSG00000042729.12	ENSMUST00000210512.2	1078	11	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_5	341.044410597799	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGATCCTGGACCTTTTG	963	False	NA	22	True	AATAAA	-15	NA	8713190	8717982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8713270_8713350_8713458_8713539_8713662_8715017_8715094_8715211_8715227_8715516_8715619_8716629_8716731_8716810_8716867_8717182_8717329_8717459_8717517_8717765
transcript_46393.known	chr19	+	380	2	FSM	ENSMUSG00000090840.3	ENSMUST00000163172.2	380	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGGCCTAGGCTTCCAGC	5854	False	NA	NA	False	AATAAA	-28	NA	8718081	8718589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8718211_8718338
transcript_46399.nic	chr19	+	2016	11	NIC	ENSMUSG00000010110.18	novel	2112	10	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	55.2485293921929	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	6936	False	NA	12	True	NA	NA	NA	8719163	8733006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_+_8719519_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
transcript_46400.known	chr19	+	995	10	FSM	ENSMUSG00000010110.18	ENSMUST00000177373.8	995	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	63.2129460095784	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGTGGCTACTATTGCC	6615	False	NA	NA	False	NA	NA	NA	8718842	8732487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8718940_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
transcript_46402.known	chr19	+	2251	11	FSM	ENSMUSG00000010110.18	ENSMUST00000176381.8	2251	11	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_1	18.8417090519942	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTGGAAGCAGGTGAATT	6549	False	NA	NA	False	ATTAAA	-19	NA	8718776	8733433	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8718940_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
transcript_46403.known	chr19	+	1720	11	FSM	ENSMUSG00000010110.18	ENSMUST00000175872.8	1720	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	60.8157874239905	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTATTTCCTCCCAATTA	6624	False	NA	-28	True	NA	NA	NA	8718851	8732966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8718940_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726264_8727029_8727137_8727269_8727392_8732272
transcript_46404.known	chr19	+	2112	10	FSM	ENSMUSG00000010110.18	ENSMUST00000073430.14	2112	10	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_5	5.51764845241562	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	6939	False	NA	12	True	NA	NA	NA	8719166	8733006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
transcript_46405.known	chr19	+	2106	10	FSM	ENSMUSG00000010110.18	ENSMUST00000176013.8	2106	10	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_4	59.188545772111	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	7024	False	NA	12	True	NA	NA	NA	8719251	8733006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8719862_8720217_8720289_8720443_8720500_8720716_8720867_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
transcript_46407.known	chr19	+	2326	21	FSM	ENSMUSG00000010097.16	ENSMUST00000010241.14	2326	21	0	0	0	0	multi-exon	FALSE	canonical	3	621	junction_4	71.7857924661976	469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGGCTTGTTTCCCTCA	8569	False	NA	47	True	GATAAA	-26	NA	8734436	8748286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8734624_8739675_8739860_8740046_8740201_8740896_8740981_8741060_8741166_8741279_8741361_8741443_8741514_8741624_8741714_8741862_8741971_8742285_8742396_8744160_8744198_8744443_8744513_8744591_8744648_8744730_8744839_8744936_8744996_8745093_8745210_8745337_8745381_8745952_8746026_8746364_8746548_8747623_8747685_8747937
transcript_46409.known	chr19	+	4042	20	FSM	ENSMUSG00000010097.16	ENSMUST00000184970.9	4042	20	0	0	0	0	multi-exon	FALSE	canonical	3	621	junction_4	65.017278760312	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTTTGTGTCCCATTACT	8603	False	NA	32	True	GATAAA	-11	NA	8734470	8748271	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8734624_8739675_8739860_8740046_8740201_8740896_8740981_8741060_8741166_8741279_8741361_8741443_8741514_8741624_8741714_8741862_8741971_8742285_8744198_8744443_8744513_8744591_8744648_8744730_8744839_8744936_8744996_8745093_8745210_8745337_8745381_8745952_8746026_8746364_8746548_8747623_8747685_8747937
transcript_46415.known	chr19	+	748	2	FSM	ENSMUSG00000117924.2	ENSMUST00000010248.4	748	2	0	0	0	0	multi-exon	FALSE	canonical	3	838	junction_1	0	3622	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCATTCTGTCCTCTCTCTC	6519	False	NA	NA	False	AATAAA	-38	NA	8748359	8749839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8748680_8749411
transcript_46419.known	chr19	-	775	5	FSM	ENSMUSG00000118346.2	ENSMUST00000237634.2	775	5	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_4	80.9073544246751	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCATGGATTTCTTGATGT	5074	False	NA	-4	True	AATATA	-17	NA	8751831	8749888	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_8750199_8750391_8750471_8750653_8750789_8750868_8750987_8751698
transcript_46426.nnic	chr19	-	660	4	NIC	ENSMUSG00000118346.2	novel	775	5	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	3	30	junction_3	106.565577097965	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCATGGATTTCTTGATG	5070	False	NA	-5	True	AATATA	-16	NA	8751835	8749889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_8750199_8750391_8750471_8750653_8750789_8751698
transcript_46428.nnic	chr19	-	652	4	NIC	ENSMUSG00000118346.2	novel	775	5	NA	NA	-13	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_2	101.226917807908	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCATGGATTTCTTGATG	5061	False	NA	-5	True	AATATA	-16	NA	8751844	8749889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_8750199_8750391_8750471_8750868_8750987_8751698
transcript_4643.known	chr1	-	587	3	FSM	ENSMUSG00000026594.15	ENSMUST00000189208.2	587	3	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_2	8	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTTTTAACTTTGTACT	NA	False	NA	-6	True	AATAAA	-16	NA	156641138	156636399	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_156636764_156639014_156639107_156641007
transcript_46433.known	chr19	-	499	3	FSM	ENSMUSG00000118346.2	ENSMUST00000235756.2	499	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	119.5	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCATGGATTTCTTGATG	5096	False	NA	-5	True	AATATA	-16	NA	8751809	8749889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_8750199_8750391_8750471_8751698
transcript_46436.known	chr19	-	818	5	FSM	ENSMUSG00000118346.2	ENSMUST00000010249.7	818	5	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_4	40.2833712591188	1751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAATATATTACTTTTC	5074	False	NA	-31	True	NA	NA	NA	8751831	8749915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_8750199_8750391_8750471_8750653_8750789_8750868_8751057_8751698
transcript_46439.known	chr19	-	2065	12	FSM	ENSMUSG00000003680.17	ENSMUST00000176610.9	2065	12	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_4	26.5722156514676	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACGTGTCTATGCTCGTG	9901	False	NA	-3	True	AATAAA	-14	NA	8763680	8751855	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_8752655_8752753_8752883_8755450_8755584_8755876_8756098_8756214_8756290_8759364_8759460_8759719_8759771_8759907_8760059_8760667_8760755_8761198_8761359_8762485_8762543_8763573
transcript_4644.known	chr1	-	2947	20	FSM	ENSMUSG00000026594.15	ENSMUST00000063199.13	2947	20	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_5	55.0008310186526	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTCTTGTATGACTTCA	NA	False	NA	-31	True	AATAAA	-38	NA	156767101	156635685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_156636764_156639014_156639107_156641007_156641114_156645310_156645404_156647382_156647489_156648956_156649035_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735349_156767058
transcript_46441.known	chr19	-	2006	11	FSM	ENSMUSG00000003680.17	ENSMUST00000177056.8	2006	11	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_10	58.7504042539283	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGACGTGTCTATGCTCG	9901	False	NA	-5	True	AATAAA	-12	NA	8763680	8751857	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_8752655_8752753_8752883_8755450_8755584_8755876_8756098_8756214_8756290_8759364_8759460_8759719_8759771_8759907_8760059_8760667_8760755_8761198_8761359_8763573
transcript_46443.known	chr19	-	1567	9	FSM	ENSMUSG00000003680.17	ENSMUST00000176688.8	1567	9	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_1	30.768287245149	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACATTTTCTTTTTTAAA	9936	False	NA	NA	False	NA	NA	NA	8763645	8755278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_8756098_8756214_8756290_8759364_8759460_8759719_8759771_8759907_8760059_8760667_8760755_8761198_8761359_8762485_8762543_8763573
transcript_46448.nic	chr19	-	2186	7	ISM	ENSMUSG00000003680.17	ENSMUST00000176688.8	1567	9	-37	2610	-2	1286	5prime_fragment	FALSE	canonical	3	152	junction_6	32.0762979299184	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCAGTATGTATTTACTCT	9899	False	NA	NA	False	AATAAA	-23	NA	8763682	8757888	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_-_8759460_8759719_8759771_8759907_8760059_8760667_8760755_8761198_8761359_8762485_8762543_8763573
transcript_4645.known	chr1	-	2498	15	FSM	ENSMUSG00000026594.15	ENSMUST00000190648.7	2498	15	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_1	35.9233878680501	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACATTGAG	NA	False	NA	NA	False	AAAAAG	-5	NA	156767163	156646446	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_156647489_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735349_156767058
transcript_46453.known	chr19	-	890	8	FSM	ENSMUSG00000071662.5	ENSMUST00000096261.5	890	8	0	0	0	0	multi-exon	FALSE	canonical	3	1319	junction_5	79.6292429106959	14712	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGGTTTGGTTTTATGT	NA	False	NA	-1	True	ATTAAA	-17	NA	8775941	8770490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_8770769_8770989_8771024_8771499_8771572_8771665_8771732_8771843_8771895_8774599_8774760_8775587_8775698_8775822
transcript_46454.known	chr19	-	833	7	FSM	ENSMUSG00000071662.5	ENSMUST00000235964.2	833	7	0	0	0	0	multi-exon	FALSE	canonical	3	1319	junction_5	75.5005518743627	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTCATGGAAATGTTG	NA	False	NA	-12	True	CATAAA	-12	NA	8775817	8770548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_8770769_8770989_8771024_8771499_8771572_8771665_8771732_8771843_8771895_8774599_8774760_8775587
transcript_46455.known	chr19	-	414	3	FSM	ENSMUSG00000071662.5	ENSMUST00000236566.2	414	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	678.5	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATTCTCTGACTCGTTTG	NA	False	NA	NA	False	NA	NA	NA	8775889	8775266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_8775504_8775587_8775698_8775822
transcript_46458.nnic	chr19	+	1927	2	NNC	ENSMUSG00000071661.8	novel	2004	2	NA	NA	-77	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	0	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTGAACTGGTGTTGG	5351	False	NA	12	True	CATAAA	-17	NA	8779841	8782210	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_8779896_8780337
transcript_46459.known	chr19	+	2004	2	FSM	ENSMUSG00000071661.8	ENSMUST00000172175.3	2004	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTGAACTGGTGTTGG	5428	False	NA	12	True	CATAAA	-17	NA	8779918	8782210	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8780050_8780337
transcript_4646.known	chr1	-	2229	18	FSM	ENSMUSG00000026594.15	ENSMUST00000185198.7	2229	18	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_3	58.0582573427307	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAATATATAGAAACATTCG	NA	False	NA	NA	False	AATAAA	-12	NA	156767196	156640650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_156641114_156645310_156645404_156647382_156647489_156648956_156649035_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735349_156767058
transcript_46460.nnic	chr19	-	1685	6	NNC	ENSMUSG00000071660.11	novel	3509	4	NA	NA	-451	1008	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	108.744838957994	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTCTTCAGCTGTCACT	1434	False	NA	-10	True	AATAAA	-16	NA	8797148	8787491	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_8787707_8788210_8788281_8788998_8789203_8793217_8793401_8795799_8796049_8796384
transcript_46462.nnic	chr19	-	1617	5	NNC	ENSMUSG00000071660.11	novel	3509	4	NA	NA	-451	1010	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	101.019800039398	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTTCAGCTGTCACTCT	1434	False	NA	-8	True	AATAAA	-18	NA	8797148	8787489	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_8787707_8788998_8789203_8793217_8793401_8795799_8796049_8796384
transcript_46466.known	chr19	-	3509	4	FSM	ENSMUSG00000071660.11	ENSMUST00000096751.11	3509	4	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_3	24.7116706571342	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAATGCATCTTAGAAATT	1885	False	NA	-13	True	AATAAA	-11	NA	8796697	8786438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_8789203_8793217_8793401_8795799_8796049_8796384
transcript_46477.known	chr19	-	600	2	FSM	ENSMUSG00000071660.11	ENSMUST00000148090.2	600	2	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAACCCTGTATCAAAAAGC	1986	False	NA	NA	False	NA	NA	NA	8796596	8795660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_8796049_8796384
transcript_46479.known	chr19	-	1585	3	FSM	ENSMUSG00000071660.11	ENSMUST00000088092.6	1585	3	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_2	7	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGGGTGTGGTGGCGCAC	1924	False	NA	NA	False	ATTAAA	-12	NA	8796658	8788659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_8789203_8793217_8793401_8795799
transcript_4648.nnic	chr1	-	380	2	NNC	ENSMUSG00000101768.2	novel	722	3	NA	NA	11693	-68499	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGTTGCACACAAGGCCG	NA	False	NA	NA	False	ATTAAA	-11	NA	156869911	156868828	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_156869083_156869785
transcript_46480.known	chr19	+	1684	12	FSM	ENSMUSG00000071657.13	ENSMUST00000159634.8	1684	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	50.3060057535483	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTTGTGTGGACATCCG	NA	False	NA	14	True	AATAAA	-14	NA	8815092	8826031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8815229_8816939_8817149_8818471_8818789_8820372_8820455_8822534_8822679_8823553_8823689_8823829_8823928_8824769_8824912_8825030_8825098_8825277_8825347_8825444_8825526_8825827
transcript_46482.known	chr19	+	1795	11	FSM	ENSMUSG00000071657.13	ENSMUST00000160556.8	1795	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	47.8256207487158	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCTTGTGTGGACATCC	NA	False	NA	13	True	AATAAA	-13	NA	8816691	8826030	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8817149_8818471_8818789_8820372_8820455_8822534_8822679_8823553_8823689_8823829_8823928_8824769_8824912_8825030_8825098_8825277_8825347_8825444_8825526_8825827
transcript_46484.known	chr19	+	1388	11	FSM	ENSMUSG00000071657.13	ENSMUST00000086058.13	1388	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	60.1671837466239	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCTTGTGTGGACATCC	NA	False	NA	13	True	AATAAA	-13	NA	8817882	8826030	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8817933_8818471_8818789_8820372_8820455_8822534_8822679_8823553_8823689_8823829_8823928_8824769_8824912_8825030_8825098_8825277_8825347_8825444_8825526_8825827
transcript_46498.known	chr19	+	1911	10	FSM	ENSMUSG00000071657.13	ENSMUST00000162071.8	1911	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	49.7082848250361	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCTTGTGTGGACATCC	NA	False	NA	13	True	AATAAA	-13	NA	8817898	8826030	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8818789_8820372_8820455_8822534_8822679_8823553_8823689_8823829_8823928_8824769_8824912_8825030_8825098_8825277_8825347_8825444_8825526_8825827
transcript_46506.known	chr19	+	1033	10	FSM	ENSMUSG00000071655.13	ENSMUST00000166407.9	1033	10	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_1	323.787653323045	6753	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTATATGCCTGGCTC	5912	False	NA	25	True	AATAAA	-13	NA	8848922	8853020	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8848950_8849034_8849121_8849222_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
transcript_46507.known	chr19	+	1291	9	FSM	ENSMUSG00000071655.13	ENSMUST00000238036.2	1291	9	0	0	0	0	multi-exon	FALSE	canonical	3	1115	junction_4	107.257575490032	4009	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGAGGGGCTGGAGAG	5946	False	NA	3	True	ATTAAA	-16	NA	8848956	8853227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8849121_8849222_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
transcript_46508.known	chr19	+	2847	3	FSM	ENSMUSG00000071655.13	ENSMUST00000237220.2	2847	3	0	0	0	0	multi-exon	FALSE	canonical	3	1115	junction_2	168	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGCCTGGCTCCTTCCAG	5849	False	NA	32	True	AATAAA	-20	NA	8848859	8853027	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8849277_8849371_8849652_8850877
transcript_46509.known	chr19	+	1127	8	FSM	ENSMUSG00000071655.13	ENSMUST00000096255.7	1127	8	0	0	0	0	multi-exon	FALSE	canonical	3	1115	junction_3	101.556257657457	923	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCCTGGCTCCTTCCAGA	6013	False	NA	33	True	AATAAA	-21	NA	8849023	8853028	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
transcript_46510.known	chr19	-	821	2	FSM	ENSMUSG00000071654.7	ENSMUST00000096253.7	821	2	0	0	0	0	multi-exon	FALSE	canonical	3	500	junction_1	0	3472	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTTGGAAAGACCATCTC	NA	False	NA	-8	True	AATGAA	-25	NA	8858287	8857377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_8857981_8858069
transcript_46513.known	chr19	+	3164	6	FSM	ENSMUSG00000096740.9	ENSMUST00000187504.7	3164	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1508.84970755871	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTTTTTGTTTTTTTT	NA	False	NA	15	True	NA	NA	NA	8861095	8869991	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8861444_8861519_8861680_8864398_8864615_8866487_8866613_8867366_8867465_8867774
transcript_46519.known	chr19	+	3274	2	FSM	ENSMUSG00000071652.9	ENSMUST00000096249.7	3274	2	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_1	0	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCCAGTGTTTCTATCTG	NA	False	NA	20	True	AATAAA	-21	NA	8870368	8875252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8870513_8872122
transcript_46520.known	chr19	-	148	1	FSM	ENSMUSG00000070167.3	ENSMUST00000093658.3	148	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCGTGCAGAAATGTAGCT	NA	False	NA	-9	True	NA	NA	NA	8866049	8865901	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_8865900_8866000
transcript_46521.known	chr19	+	806	4	FSM	ENSMUSG00000071653.10	ENSMUST00000096251.10	806	4	0	0	0	0	multi-exon	FALSE	canonical	3	2965	junction_2	196.086715511276	5524	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCCCAACATTTGCCAGGC	NA	False	NA	NA	False	NA	NA	NA	8866216	8868245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8866329_8866487_8866613_8867366_8867465_8867774
transcript_46522.known	chr19	+	784	3	FSM	ENSMUSG00000071653.10	ENSMUST00000186647.7	784	3	0	0	0	0	multi-exon	FALSE	canonical	3	2965	junction_1	112.5	910	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGATGAAGTGCAGCAGGG	NA	False	NA	32	True	AATAAA	-21	NA	8866262	8868110	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8866613_8867366_8867465_8867774
transcript_46523.known	chr19	+	830	4	FSM	ENSMUSG00000071653.10	ENSMUST00000190843.2	830	4	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	1438.49141657347	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTGTGGGATGAAGTGCAG	NA	False	NA	27	True	AATAAA	-16	NA	8866302	8868105	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8866613_8867000_8867092_8867366_8867465_8867774
transcript_46524.known	chr19	+	500	5	FSM	ENSMUSG00000071653.10	ENSMUST00000185488.7	500	5	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_2	1592.05511839258	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTCAACAGCACTGAGAAAG	NA	False	NA	NA	False	NA	NA	NA	8866278	8867910	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8866329_8866487_8866613_8867000_8867092_8867366_8867465_8867774
transcript_46526.known	chr19	+	3860	25	FSM	ENSMUSG00000071650.7	ENSMUST00000096246.5	3860	25	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_6	273.686404967234	1255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGATGTCTGAATTATACT	1893	False	NA	-56	True	GATAAA	-42	NA	8875464	8894036	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884578_8884759_8885214_8885281_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
transcript_46528.known	chr19	+	3788	24	FSM	ENSMUSG00000071650.7	ENSMUST00000235274.2	3788	24	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_5	142.157557894544	1324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGATGTCTGAATTATACT	1899	False	NA	-56	True	GATAAA	-42	NA	8875470	8894036	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884578_8884759_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
transcript_46533.known	chr19	+	1603	5	FSM	ENSMUSG00000071649.7	ENSMUST00000096243.7	1603	5	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_3	18.060661671157	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGCTTCATGGTTTCCTTC	4712	False	NA	19	True	AATAAA	-16	NA	8897737	8904600	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8898013_8899169_8899345_8902901_8903263_8903445_8903737_8904099
transcript_46534.known	chr19	+	909	5	FSM	ENSMUSG00000071649.7	ENSMUST00000237071.2	909	5	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	75.1644031440415	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCATTGAGGTGTGATGGC	4822	False	NA	NA	False	NA	NA	NA	8897847	8904182	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8898013_8899169_8899345_8903067_8903263_8903445_8903737_8904099
transcript_46537.known	chr19	-	1517	3	FSM	ENSMUSG00000071648.5	ENSMUST00000096242.5	1517	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.5	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGTTCTCCCGCTCTCT	NA	False	NA	NA	False	AATAAA	-16	NA	8906720	8904754	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_8905252_8905341_8905589_8905947
transcript_46538.known	chr19	+	3322	22	FSM	ENSMUSG00000071647.6	ENSMUST00000096241.6	3322	22	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	12.0183155765295	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCTGGTGCTTTTGTGCG	1915	False	NA	6	True	AATAAA	-14	NA	8906915	8918946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8907317_8908162_8908335_8908407_8908669_8908753_8908868_8910605_8910674_8910786_8910911_8911133_8911305_8911450_8911521_8911605_8911717_8912314_8912411_8913667_8913824_8913982_8914125_8914492_8914645_8914725_8914852_8914926_8915059_8915825_8915894_8916391_8916481_8916551_8916650_8916780_8916869_8917942_8918042_8918266_8918398_8918493
transcript_46539.known	chr19	+	2978	22	FSM	ENSMUSG00000071647.6	ENSMUST00000224272.2	2978	22	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	11.2769706937285	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCTGGTGCTTTTGTGCG	2256	False	NA	6	True	AATAAA	-14	NA	8907256	8918946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8907317_8908162_8908335_8908410_8908669_8908753_8908868_8910605_8910674_8910786_8910911_8911133_8911305_8911450_8911521_8911605_8911717_8912314_8912411_8913667_8913824_8913982_8914125_8914492_8914645_8914725_8914852_8914926_8915059_8915825_8915894_8916391_8916481_8916551_8916650_8916780_8916869_8917942_8918042_8918266_8918398_8918493
transcript_46541.known	chr19	+	3135	18	FSM	ENSMUSG00000071646.10	ENSMUST00000096240.3	3135	18	0	0	0	0	multi-exon	FALSE	canonical	3	728	junction_3	72.954410564141	2111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTCAGCTATTCTGTGTG	3469	False	NA	20	True	AATAAA	-24	NA	8919238	8929667	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8919747_8920828_8920897_8921376_8921471_8923119_8923238_8923369_8923434_8923630_8923749_8924011_8924115_8924400_8924501_8924615_8924805_8924888_8924964_8925090_8925150_8925388_8925487_8925620_8925761_8926314_8926544_8927663_8927754_8928275_8928395_8928499_8928649_8928853
transcript_46543.known	chr19	+	2753	9	FSM	ENSMUSG00000071645.7	ENSMUST00000096239.7	2753	9	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_7	18.3234822018087	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATGTTCTTTTGCATAC	1357	False	NA	11	True	AATAAA	-26	NA	8931210	8943574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8931386_8932750_8932942_8936450_8936767_8937106_8937208_8939707_8940187_8941383_8941494_8941627_8941739_8941924_8942018_8942397
transcript_46548.known	chr19	+	1858	5	FSM	ENSMUSG00000071645.7	ENSMUST00000236564.2	1858	5	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	17.1955662890176	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGTGTCCGCATCTCA	1440	False	NA	NA	False	AATAAA	-24	NA	8931293	8940865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8931386_8932750_8932942_8936450_8936767_8937106_8937208_8939707
transcript_4655.known	chr1	+	1618	10	FSM	ENSMUSG00000033488.12	ENSMUST00000046743.11	1618	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_7	9.08125188520113	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	14	True	NA	NA	NA	157286149	157316630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_157286216_157286313_157286423_157289522_157289620_157291978_157292038_157292534_157292601_157293281_157293392_157294735_157294818_157298185_157298368_157299757_157299987_157316012
transcript_4656.known	chr1	+	1125	7	FSM	ENSMUSG00000033488.12	ENSMUST00000119891.7	1125	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_6	19.7624784770422	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	14	True	NA	NA	NA	157286149	157316630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_157286216_157286313_157286423_157289522_157289620_157291978_157292038_157292534_157292601_157293281_157293392_157316012
transcript_4657.known	chr1	+	778	8	FSM	ENSMUSG00000033488.12	ENSMUST00000193791.6	778	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	18.9725903258746	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTAATCATTGTGGCCA	NA	False	NA	NA	False	NA	NA	NA	157286146	157316198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_157286216_157286313_157286423_157289522_157289620_157291978_157292038_157292534_157292601_157293281_157293392_157294735_157294818_157316012
transcript_46571.known	chr19	+	1864	10	FSM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	0	0	0	0	multi-exon	FALSE	canonical	3	5201	junction_1	1272.81743475733	55296	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGTTTTCTGTCATAGC	843	False	NA	NA	False	AAGAAA	-37	NA	8944404	8955843	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
transcript_46572.nic	chr19	+	1159	7	NIC	ENSMUSG00000069833.14	novel	989	6	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_5	26.9222130508537	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTGTTCTGTGATCACC	NA	False	NA	13	True	AATAAA	-14	NA	8966621	9054278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_+_8966794_8977025_8977137_8977463_8977621_8978039_8978228_9014522_9014623_9022988_9023081_9053939
transcript_46574.known	chr19	+	830	6	FSM	ENSMUSG00000069833.14	ENSMUST00000092955.11	830	6	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_5	17.6703140888893	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGAGGTGGCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	8966658	9054078	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8966794_8977025_8977137_8977463_8977621_8978039_8978228_9014522_9014623_9053939
transcript_46578.known	chr19	+	18100	5	FSM	ENSMUSG00000069833.14	ENSMUST00000092956.4	18100	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	26.3853652618265	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATCGTGCTCTTGTATTC	NA	False	NA	6	True	AATAAA	-19	NA	8966647	8996560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_8966794_8977025_8977137_8977463_8977621_8978039_8978228_8979062
transcript_46580.nnic	chr19	+	1151	5	NNC	ENSMUSG00000069833.14	novel	989	6	NA	NA	937	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	36.4039832985348	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTGCCAAAATTTGGTGT	404	False	NA	NA	False	ATTAAA	-13	NA	8967595	8979650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_8967703_8977025_8977137_8977463_8977621_8978039_8978228_8979062
transcript_46590.known	chr19	-	4195	7	FSM	ENSMUSG00000024654.9	ENSMUST00000049948.6	4195	7	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_3	31.0344790336311	1290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTGCTCCTTGTCACAG	NA	False	NA	NA	False	NA	NA	NA	9113000	9087231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_9090573_9091547_9091659_9093865_9093985_9095892_9096051_9096551_9096695_9112150_9112352_9112878
transcript_46600.known	chr19	-	320	3	FSM	ENSMUSG00000024654.9	ENSMUST00000150353.2	320	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	223	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTCTAAATGTCTATGCTA	NA	False	NA	NA	False	ATTAAA	-18	NA	9112895	9109822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_9109862_9112087_9112352_9112878
transcript_46601.known	chr19	+	580	1	FSM	ENSMUSG00000117804.2	ENSMUST00000236432.2	580	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1141	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTAAAGAAAATGACTGAAT	NA	False	NA	NA	False	NA	NA	NA	9193744	9194324	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_9193700_9194300
transcript_46603.nnic	chr19	+	1191	2	Genic_Genomic	ENSMUSG00000067608.6	novel	781	1	NA	NA	-142	351	multi-exon	FALSE	canonical	0	0	junction_1	0	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCAAGTGACCATAGGTAT	NA	False	NA	NA	False	AATAAA	-37	NA	9260601	9261875	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr19_+_9261246_9261328
transcript_46605.nnic	chr19	+	1292	3	NNC	ENSMUSG00000100141.2	novel	1112	2	NA	NA	-298	-29	intron_retention	TRUE	non_canonical	0	0	junction_1	0	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCATCTTAGTATTCATCA	NA	False	NA	NA	False	NA	NA	NA	9584169	9585711	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_9584950_9585032_9585454_9585620
transcript_46612.known	chr19	-	3236	18	FSM	ENSMUSG00000024660.10	ENSMUST00000025562.9	3236	18	0	0	0	0	multi-exon	FALSE	canonical	3	363	junction_14	47.6890156590894	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCAGCAGTATGTCTTG	NA	False	NA	-3	True	NA	NA	NA	9876915	9849659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_9850238_9851583_9851735_9852179_9852288_9852461_9852541_9853953_9854181_9855040_9855161_9855491_9855613_9855682_9855793_9861062_9861198_9861268_9861384_9861801_9861854_9862836_9862952_9863070_9863129_9864038_9864091_9870636_9871374_9872202_9872317_9872684_9872836_9876702
transcript_46616.known	chr19	-	3449	17	FSM	ENSMUSG00000024660.10	ENSMUST00000238129.2	3449	17	0	0	0	0	multi-exon	FALSE	canonical	3	363	junction_13	49.1273854382665	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGACTAGAGGCTTCATTG	NA	False	NA	-31	True	AATAAA	-33	NA	9876825	9849687	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_9850238_9851583_9851735_9852179_9852288_9852461_9852541_9853953_9854181_9855040_9855613_9855682_9855793_9861062_9861198_9861268_9861384_9861801_9861854_9862836_9862952_9863070_9863129_9864038_9864091_9870636_9871374_9872202_9872317_9872684_9872836_9876702
transcript_46622.nnic	chr19	+	825	4	NNC	ENSMUSG00000118100.2	novel	582	3	NA	NA	-42	2	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	5.18544972870135	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGCCATGGTGTCTCTTC	NA	False	NA	NA	False	NA	NA	NA	9877011	9880027	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_9877385_9878231_9878442_9879061_9879157_9879880
transcript_46623.known	chr19	+	582	3	FSM	ENSMUSG00000118100.2	ENSMUST00000235986.2	582	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	6	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGTCTGCCTGCATGCC	NA	False	NA	NA	False	NA	NA	NA	9877053	9879921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_9877385_9878231_9878442_9879880
transcript_46625.known	chr19	+	472	2	FSM	ENSMUSG00000118100.2	ENSMUST00000235814.2	472	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAATGGCCATGGTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	9877057	9880025	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_9877385_9879880
transcript_46626.known	chr19	+	330	2	FSM	ENSMUSG00000118100.2	ENSMUST00000235252.2	330	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTGCCTTGCTCATGGT	NA	False	NA	NA	False	NA	NA	NA	9877298	9878475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_9877385_9878231
transcript_4663.nnic	chr1	+	720	4	Intergenic	novelGene_7	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCTTTTATCTACCCAAT	NA	False	NA	NA	False	NA	NA	NA	159158688	159163182	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr1_+_159158986_159159747_159159926_159162738_159162810_159163008
transcript_46633.known	chr19	+	516	4	FSM	ENSMUSG00000024661.8	ENSMUST00000235407.2	516	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2611.97375348392	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGGTGAAATCCATTAAAG	4927	False	NA	NA	False	NA	NA	NA	9960067	9962179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_9960348_9961616_9961692_9961923_9962050_9962144
transcript_46638.known	chr19	+	929	4	FSM	ENSMUSG00000024661.8	ENSMUST00000025563.8	929	4	0	0	0	0	multi-exon	FALSE	canonical	3	5325	junction_2	217.148694574836	54149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTGTGATTGAGGAT	4869	False	NA	23	True	AATAAA	-21	NA	9960009	9962462	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_9960348_9961544_9961692_9961923_9962050_9962144
transcript_46639.known	chr19	+	2062	3	FSM	ENSMUSG00000024661.8	ENSMUST00000237316.2	2062	3	0	0	0	0	multi-exon	FALSE	canonical	3	5325	junction_1	204.5	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCTTTTCTTTGTGATT	4927	False	NA	17	True	AATAAA	-15	NA	9960067	9962456	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_9961692_9961923_9962050_9962144
transcript_4664.nnic	chr1	+	673	4	Intergenic	novelGene_6	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCTTCTGCTCCACCTTC	NA	False	NA	NA	False	NA	NA	NA	159158688	159163165	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr1_+_159158986_159159747_159159926_159162738_159162810_159163038
transcript_46640.known	chr19	+	2305	10	FSM	ENSMUSG00000024663.21	ENSMUST00000149967.9	2305	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	15.1787700993327	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCGGCAGTGGCCTTCAC	818	False	NA	8	True	AATAAA	-23	NA	9992407	10012825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_9992650_10003893_10004150_10004747_10004844_10004923_10005002_10005648_10005868_10007513_10007643_10007732_10007846_10009716_10009817_10011107_10011175_10011820
transcript_46642.known	chr19	+	5146	10	FSM	ENSMUSG00000024663.21	ENSMUST00000113161.10	5146	10	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_4	9.36897954837013	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATATTAGGGATTTTTTTT	3967	False	NA	NA	False	NA	NA	NA	9995556	10015741	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_9995724_10003893_10004150_10004747_10004844_10004923_10005002_10005648_10005868_10007513_10007643_10007732_10007846_10009716_10009817_10011107_10011175_10011820
transcript_46644.known	chr19	+	2004	9	FSM	ENSMUSG00000024663.21	ENSMUST00000117641.8	2004	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	8.51377560192891	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGCTAGGCGGCAGTGGC	3968	False	NA	2	True	AATAAA	-17	NA	9995557	10012819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_9995724_10003893_10004150_10004747_10004844_10004923_10005002_10007513_10007643_10007732_10007846_10009716_10009817_10011107_10011175_10011820
transcript_46645.known	chr19	-	3150	12	FSM	ENSMUSG00000024665.9	ENSMUST00000025567.9	3150	12	0	0	0	0	multi-exon	TRUE	canonical	3	359	junction_1	25.8738196920081	681	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCCTGTAGTTCAGCAAG	9871	False	NA	-4	True	AATAAA	-25	NA	10079110	10040128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_10041679_10042049_10042176_10042965_10043046_10043615_10043713_10043878_10043977_10047635_10047713_10047927_10047989_10059928_10060055_10066065_10066168_10066271_10066470_10069104_10069216_10078586
transcript_46650.known	chr19	+	3460	12	FSM	ENSMUSG00000010663.6	ENSMUST00000010807.6	3460	12	0	0	0	0	multi-exon	TRUE	canonical	3	652	junction_7	60.0436480355873	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTGTTATTCATTTGA	NA	False	NA	18	True	AATAAA	-19	NA	10160251	10174238	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_10160629_10162290_10162402_10163048_10163247_10163741_10163844_10164118_10164248_10168803_10168865_10170275_10170353_10171064_10171163_10171359_10171457_10171681_10171762_10171852_10171979_10172234
transcript_46656.known	chr19	+	1310	5	FSM	ENSMUSG00000010663.6	ENSMUST00000237221.2	1310	5	0	0	0	0	multi-exon	FALSE	canonical	3	747	junction_1	26.688012290165	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAAAAAAAAATCACA	NA	False	NA	NA	False	NA	NA	NA	10160348	10164737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_10160629_10162290_10162402_10163048_10163247_10163741_10163844_10164118
transcript_46659.known	chr19	+	981	5	FSM	ENSMUSG00000036372.15	ENSMUST00000153854.8	981	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	1802.63896829066	3305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCATGTCCATTCTTAGGG	3977	False	NA	33	True	AATAAA	-22	NA	10181377	10185188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_10181629_10183113_10183489_10183787_10183898_10184527_10184665_10185080
transcript_46671.known	chr19	-	2373	3	FSM	ENSMUSG00000024742.16	ENSMUST00000156291.2	2373	3	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_2	414.5	615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTCTGAATGTTTGAAAA	1929	False	NA	NA	False	AATAAA	-20	NA	10181533	10176495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_10178462_10181051_10181384_10181458
transcript_46673.known	chr19	-	2100	2	FSM	ENSMUSG00000024742.16	ENSMUST00000116542.9	2100	2	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_1	0	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAATGTGTCTGAATGTT	2155	False	NA	NA	False	AATAAA	-14	NA	10181307	10176501	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_10178462_10181167
transcript_46674.known	chr19	-	2152	2	FSM	ENSMUSG00000024742.16	ENSMUST00000142241.2	2152	2	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	0	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGACCAGAATGTGTCTGAA	2204	False	NA	NA	False	AATAAA	-10	NA	10181258	10176505	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_10178462_10181062
transcript_46675.known	chr19	+	1026	3	FSM	ENSMUSG00000036372.15	ENSMUST00000127878.2	1026	3	0	0	0	0	multi-exon	FALSE	canonical	3	2797	junction_1	181	693	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGCCTCATGTCCATTC	4181	False	NA	27	True	AATAAA	-16	NA	10181581	10185182	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_10181629_10183787_10184665_10185080
transcript_46676.known	chr19	+	447	4	FSM	ENSMUSG00000036372.15	ENSMUST00000166412.2	447	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	1710.34778789448	3328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCATGTCCATTCTTAGGG	245	False	NA	33	True	AATAAA	-22	NA	10183396	10185188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_10183489_10183787_10183898_10184527_10184665_10185080
transcript_46678.nnic	chr19	+	630	3	Antisense	novelGene_ENSMUSG00000035735.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	1	16	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACACTGACTGCGTCGGGC	NA	False	NA	NA	False	NA	NA	NA	10229364	10231576	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr19_+_10229452_10230717_10230922_10231237
transcript_46689.known	chr19	+	3500	10	FSM	ENSMUSG00000034820.5	ENSMUST00000038379.5	3500	10	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_5	38.5749230894635	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTTATACTGCATTGT	NA	False	NA	16	True	AATAAA	-16	NA	10502629	10525017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_10502692_10503315_10503425_10509144_10509364_10510183_10510288_10510656_10510830_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
transcript_46692.nic	chr19	-	919	6	NIC	ENSMUSG00000024667.13	novel	876	6	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	28.4717403753266	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATACAGGGCTGGTTGATT	NA	False	NA	-10	True	AATAAA	-10	NA	10533149	10527831	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_10528184_10528321_10528405_10529136_10529339_10531892_10531986_10532426_10532529_10533062
transcript_46693.known	chr19	-	876	6	FSM	ENSMUSG00000024667.13	ENSMUST00000236561.2	876	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	26.7686383665662	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATACAGGGCTGGTTGATT	NA	False	NA	-10	True	AATAAA	-10	NA	10533120	10527831	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_10528184_10528321_10528405_10529136_10529339_10531892_10531986_10532426_10532529_10533076
transcript_46695.known	chr19	-	2025	5	FSM	ENSMUSG00000024668.9	ENSMUST00000235853.2	2025	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	101.25802437338	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTATTGTTTGATCTAC	NA	False	NA	NA	False	AATAAA	-17	NA	10502520	10479004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_10480494_10494343_10494454_10494532_10494751_10498312_10498423_10502422
transcript_46710.known	chr19	-	999	5	FSM	ENSMUSG00000024667.13	ENSMUST00000059582.9	999	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_4	20.6079474960511	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATTTTTAATAAAAGTAT	NA	False	NA	-34	True	NA	NA	NA	10533115	10527855	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_10528405_10529136_10529339_10531892_10531986_10532426_10532529_10533062
transcript_46711.known	chr19	-	927	5	FSM	ENSMUSG00000024667.13	ENSMUST00000154383.2	927	5	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_4	15.1224171348366	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAACCCATTTAGTAGTTT	NA	False	NA	-92	True	NA	NA	NA	10533115	10527913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_10528405_10529136_10529339_10531892_10531986_10532426_10532529_10533076
transcript_46712.known	chr19	-	1101	5	FSM	ENSMUSG00000024667.13	ENSMUST00000025569.9	1101	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	35.1603469834983	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTGGTTGATTTTCTCCT	NA	False	NA	-3	True	AATAAA	-17	NA	10533602	10527824	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_10528405_10529136_10529339_10531892_10531986_10532426_10532529_10533478
transcript_46718.known	chr19	-	2981	4	FSM	ENSMUSG00000024668.9	ENSMUST00000025570.8	2981	4	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_1	14.7196014438797	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGCTCCCCAGGACCCAC	NA	False	NA	NA	False	AATAAA	-16	NA	10502479	10477897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_10480494_10494343_10494454_10494532_10494751_10502422
transcript_46719.known	chr19	-	997	4	FSM	ENSMUSG00000024668.9	ENSMUST00000235243.2	997	4	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	80.2426874480715	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCATTGAGGCAAACTTTC	NA	False	NA	0	True	NA	NA	NA	10502456	10479707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_10480494_10494343_10494454_10494683_10494751_10502422
transcript_46720.known	chr19	-	1231	5	FSM	ENSMUSG00000024668.9	ENSMUST00000237827.2	1231	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	111.850346445597	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTCACAATTATCTTCATT	NA	False	NA	-99	True	AAGAAA	-17	NA	10502546	10479806	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_10480494_10482797_10482890_10494343_10494454_10494532_10494751_10502422
transcript_46721.known	chr19	-	1228	3	FSM	ENSMUSG00000024668.9	ENSMUST00000235446.2	1228	3	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_1	5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTGGCATTGAGGCAAAC	NA	False	NA	-4	True	NA	NA	NA	10502461	10479711	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_10480494_10494343_10494751_10502422
transcript_46722.known	chr19	+	1760	9	FSM	ENSMUSG00000034820.5	ENSMUST00000237321.2	1760	9	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_5	40.6030710045435	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAATAATATCATTTAAAT	NA	False	NA	NA	False	AATAAA	-27	NA	10502629	10518434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_10502692_10503315_10503425_10509144_10509364_10510183_10510288_10510656_10510830_10512467_10512883_10514162_10514282_10516983_10517153_10518044
transcript_46725.known	chr19	+	4459	27	FSM	ENSMUSG00000024740.11	ENSMUST00000025649.10	4459	27	0	0	0	0	multi-exon	FALSE	canonical	3	2606	junction_4	266.254060724097	2307	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCTTATTGGTCTCTGC	370	False	NA	56	True	AATAAA	-16	NA	10582690	10607183	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
transcript_46728.known	chr19	-	2437	18	FSM	ENSMUSG00000034371.10	ENSMUST00000236950.2	2437	18	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_17	12.9229818620786	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTTTGTCCCTGTTTACA	9789	False	NA	-23	True	AATAAA	-17	NA	10582748	10569560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_10570154_10570510_10570601_10570689_10570724_10570827_10570932_10571033_10571141_10571794_10571933_10572066_10572187_10572657_10572775_10573375_10573466_10573561_10573647_10573721_10573757_10574295_10574386_10574673_10574753_10576395_10576578_10576671_10576783_10577934_10578125_10581531_10581638_10582582
transcript_46729.known	chr19	-	2516	18	FSM	ENSMUSG00000034371.10	ENSMUST00000236607.2	2516	18	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_17	13.858404068355	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGACTTTGTCCCTGTTTAC	9519	False	NA	-24	True	AATAAA	-16	NA	10583018	10569561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_10570154_10570510_10570601_10570689_10570724_10570827_10570932_10571033_10571141_10571794_10571933_10572066_10572187_10572657_10572775_10573375_10573466_10573561_10573647_10573721_10573757_10574295_10574386_10574673_10574753_10576395_10576578_10576671_10576783_10577934_10578125_10581531_10581638_10582772
transcript_4673.known	chr1	+	674	3	FSM	ENSMUSG00000058267.14	ENSMUST00000078878.14	674	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1378.5	796	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGGTCTTTCCTTCAAGT	NA	False	NA	17	True	AATAAA	-17	NA	160022784	160027390	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_160022882_160024490_160024675_160026997
transcript_46732.known	chr19	+	2634	9	FSM	ENSMUSG00000034445.9	ENSMUST00000237581.2	2634	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	28.8693176226942	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATCAGAGGTCTCTTTT	NA	False	NA	7	True	ATTAAA	-10	NA	10554854	10567186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_10554928_10555097_10555448_10556345_10556439_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
transcript_46733.known	chr19	+	3130	8	FSM	ENSMUSG00000034445.9	ENSMUST00000237814.2	3130	8	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	19.4768308196049	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTCTCTTTTGTTCAGA	NA	False	NA	14	True	ATTAAA	-17	NA	10554535	10567193	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_10555448_10556345_10556439_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
transcript_46742.known	chr19	+	1474	7	FSM	ENSMUSG00000034445.9	ENSMUST00000168445.2	1474	7	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	29.6516816086748	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGGGCAGGGGCTCCTGGG	NA	False	NA	NA	False	NA	NA	NA	10554817	10565912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_10555448_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
transcript_46743.known	chr19	+	2149	7	FSM	ENSMUSG00000034445.9	ENSMUST00000237641.2	2149	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_6	40.1939741199543	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGAGGTCTCTTTTGTTCA	NA	False	NA	12	True	ATTAAA	-15	NA	10554817	10567191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_10555448_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10566492
transcript_46748.known	chr19	-	1260	5	FSM	ENSMUSG00000024666.7	ENSMUST00000235990.2	1260	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	58.8175143983491	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTTGGTGTCTTCATG	1765	False	NA	-6	True	AATAAA	-13	NA	10554471	10547843	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_10548633_10548892_10548969_10552200_10552300_10552603_10552876_10554447
transcript_46749.known	chr19	-	1529	5	FSM	ENSMUSG00000024666.7	ENSMUST00000236099.2	1529	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	65.3543227338483	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTGGTGTCTTCATGGT	1785	False	NA	-4	True	AATAAA	-15	NA	10554451	10547841	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_10548633_10548892_10548969_10552200_10552373_10552603_10552876_10554233
transcript_46750.nic	chr19	-	1448	5	NIC	ENSMUSG00000024666.7	novel	1260	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_4	52.1464284491278	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTTGGTGTCTTCATG	1765	False	NA	-6	True	AATAAA	-13	NA	10554471	10547843	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_10548633_10548892_10548969_10552200_10552373_10552603_10552876_10554332
transcript_46751.known	chr19	-	1590	5	FSM	ENSMUSG00000024666.7	ENSMUST00000025568.3	1590	5	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_4	27.5896266738062	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTGGTGTCTTCATGGT	1510	False	NA	-4	True	AATAAA	-15	NA	10554726	10547841	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_10548633_10548892_10548969_10552200_10552373_10552603_10552876_10554447
transcript_46757.known	chr19	-	1593	4	FSM	ENSMUSG00000024666.7	ENSMUST00000236185.2	1593	4	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_3	28.0158685192676	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTTGGTGTCTTCATG	1765	False	NA	-6	True	AATAAA	-13	NA	10554471	10547843	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_10548969_10552200_10552373_10552603_10552876_10554447
transcript_46763.known	chr19	-	853	4	FSM	ENSMUSG00000024666.7	ENSMUST00000236958.2	853	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	60.3563492011312	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTCTATCCTCTGGAAG	1791	False	NA	NA	False	ATTAAA	-16	NA	10554445	10551040	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_10551337_10552200_10552373_10552603_10552876_10554332
transcript_46765.nic	chr19	-	1496	8	ISM	ENSMUSG00000024738.7	ENSMUST00000025647.7	1417	9	1055	0	-199	0	3prime_fragment	FALSE	canonical	3	9	junction_1	1.72614942479922	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATACTAACGTCTGCTCT	NA	False	NA	NA	False	AATAAA	-20	NA	10654380	10646319	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_-_10646626_10646718_10646818_10646891_10647037_10649151_10649269_10651001_10651202_10652190_10652310_10652407_10652526_10653988
transcript_46766.nnic	chr19	-	1179	7	NIC	ENSMUSG00000024738.7	novel	1417	9	NA	NA	-82	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	4.7404875511093	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATACTAACGTCTGCTCT	NA	False	NA	NA	False	AATAAA	-20	NA	10654263	10646319	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_10646626_10646718_10646818_10646891_10647037_10649151_10649269_10652190_10652310_10652407_10652526_10653988
transcript_46769.known	chr19	+	2690	5	FSM	ENSMUSG00000048832.10	ENSMUST00000235927.2	2690	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	43.0145324280062	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGGTGTCCATGATGAG	NA	False	NA	16	True	AATAAA	-19	NA	10666114	10691990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_10666348_10683573_10683673_10687633_10687806_10688634_10688718_10689887
transcript_46770.nic	chr19	+	2541	5	NIC	ENSMUSG00000048832.10	novel	2690	5	NA	NA	-9	0	combination_of_known_junctions	TRUE	canonical	3	17	junction_1	44.7017896733453	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGGTGTCCATGATGAG	NA	False	NA	16	True	AATAAA	-19	NA	10666089	10691990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_+_10666174_10683573_10683673_10687633_10687806_10688634_10688718_10689887
transcript_46772.nic	chr19	+	2543	4	NIC	ENSMUSG00000048832.10	novel	2686	5	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_2	51.9893151415643	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGGTGTCCATGATGAG	NA	False	NA	16	True	AATAAA	-19	NA	10666085	10691990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_+_10666344_10683573_10683673_10688634_10688718_10689887
transcript_46773.known	chr19	-	2173	9	FSM	ENSMUSG00000024670.18	ENSMUST00000025572.8	2173	9	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_4	1.11102430216445	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACTAGGCGTGTCTTGA	8156	False	NA	NA	False	ATTAAA	-13	NA	10776108	10766709	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_10767608_10767932_10768035_10768279_10768535_10768745_10768818_10770191_10770309_10771505_10771602_10771927_10772069_10773689_10773753_10775679
transcript_46775.known	chr19	-	3657	11	FSM	ENSMUSG00000024736.16	ENSMUST00000025645.14	3657	11	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_8	9.57131129992124	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGTGACACTCTCTGTC	NA	False	NA	1	True	AATAAA	-27	NA	10847304	10835185	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_10836516_10836927_10837120_10837487_10837762_10838893_10839097_10840586_10840731_10840828_10841025_10841318_10841469_10842619_10842952_10843832_10844052_10844293_10844509_10846902
transcript_46777.known	chr19	-	3895	10	FSM	ENSMUSG00000024736.16	ENSMUST00000120524.2	3895	10	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_7	10.088497300281	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATAGCTGGTACTGCTGTG	NA	False	NA	-11	True	AATAAA	-15	NA	10847142	10835197	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_10837120_10837487_10837762_10838893_10839097_10840586_10840731_10840828_10841025_10841318_10841469_10842619_10842952_10843832_10844052_10844293_10844509_10846902
transcript_46778.known	chr19	-	2188	4	FSM	ENSMUSG00000034659.15	ENSMUST00000038128.15	2188	4	0	0	0	0	multi-exon	TRUE	canonical	3	149	junction_2	8.28653526310404	263	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTGCTGACAAACTCTC	NA	False	NA	-3	True	AATAAA	-17	NA	10859365	10848023	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_10849514_10849950_10850054_10851605_10851851_10859015
transcript_46780.known	chr19	+	6035	16	FSM	ENSMUSG00000024735.14	ENSMUST00000179297.3	6035	16	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	36.1106940146852	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGTGTGGTATGTGCCC	NA	False	NA	NA	False	AATAAA	-22	NA	10872777	10886923	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_10872833_10874866_10875017_10875180_10875258_10876289_10876489_10876568_10876643_10876733_10876797_10877538_10877581_10877687_10877763_10878053_10878130_10878290_10878401_10879707_10879864_10880065_10880136_10880331_10880418_10880654_10880826_10881001_10881108_10882398
transcript_46783.known	chr19	+	2134	16	FSM	ENSMUSG00000024735.14	ENSMUST00000025642.14	2134	16	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_6	13.7346277707115	3683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCAGCTTCTTGTGTCTG	NA	False	NA	15	True	ATTAAA	-21	NA	10872594	10882896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_10872833_10874866_10875017_10875180_10875258_10876346_10876489_10876568_10876643_10876733_10876797_10877538_10877581_10877687_10877763_10878053_10878130_10878290_10878401_10879707_10879864_10880065_10880136_10880331_10880418_10880654_10880826_10881001_10881108_10882398
transcript_46802.known	chr19	-	3003	4	FSM	ENSMUSG00000024732.8	ENSMUST00000025639.7	3003	4	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_1	21.483844059096	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCACCTTGCTCCGGGAG	NA	False	NA	NA	False	ATTAAA	-22	NA	10926630	10918844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_10920654_10920841_10920917_10922646_10922777_10925641
transcript_46803.nnic	chr19	-	1641	5	NNC	ENSMUSG00000024732.8	novel	3003	4	NA	NA	-77	-1319	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	114.6799895361	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCTTCAGCTGTGAATT	NA	False	NA	-95	True	AAAACA	-7	NA	10926707	10920163	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_10920654_10920841_10920917_10922646_10922777_10925641_10926169_10926288
transcript_46805.nnic	chr19	-	1577	5	NNC	ENSMUSG00000024732.8	novel	3003	4	NA	NA	-14	-1319	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	114.6799895361	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCTTCAGCTGTGAATT	NA	False	NA	-95	True	AAAACA	-7	NA	10926644	10920163	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_10920654_10920841_10920917_10922646_10922777_10925641_10926225_10926345
transcript_46809.known	chr19	-	3745	1	FSM	ENSMUSG00000024732.8	ENSMUST00000189018.2	3745	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAGAAAAAAGAGCAG	NA	False	NA	NA	False	NA	NA	NA	10926615	10922870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_10922900_10926600
transcript_46810.known	chr19	-	1011	9	FSM	ENSMUSG00000024731.16	ENSMUST00000072748.13	1011	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.707106781186548	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACCGGGGTGTCCTGAGA	NA	False	NA	NA	False	AATAAA	-20	NA	10952034	10939656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_10939767_10940298_10940438_10941399_10941494_10942025_10942137_10943121_10943254_10944431_10944489_10945485_10945606_10945955_10946152_10951982
transcript_46812.nic	chr19	-	937	8	NIC	ENSMUSG00000024731.16	novel	1011	9	NA	NA	-72	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	0.755928946018454	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAAGAAACCGGGGTGT	NA	False	NA	NA	False	AATAAA	-13	NA	10952106	10939663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_10939767_10941399_10941494_10942025_10942137_10943121_10943254_10944431_10944489_10945485_10945606_10945955_10946152_10951982
transcript_46814.known	chr19	-	1713	7	FSM	ENSMUSG00000067571.5	ENSMUST00000087923.4	1713	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTTGGTCTCAATGTGG	4073	False	NA	NA	False	AATAAA	-17	NA	10970614	10955670	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_10956690_10957462_10957577_10957933_10958027_10958656_10958714_10960536_10960660_10962033_10962209_10970482
transcript_46817.nnic	chr19	+	988	3	NNC	ENSMUSG00000097091.2	novel	1022	3	NA	NA	95594	4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	0.5	44	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTGTTTTGGTTCCATTA	NA	False	NA	NA	False	NA	NA	NA	11269774	11277254	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_11269885_11270003_11270177_11276549
transcript_46819.nnic	chr19	-	614	5	NNC	ENSMUSG00000054523.14	novel	549	5	NA	NA	-51	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.866025403784439	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGATGCCAGTCCTGCTT	9113	False	NA	NA	False	AGTAAA	-18	NA	11257069	11251524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_11251663_11253973_11254127_11255049_11255107_11256613_11256743_11256932
transcript_46820.known	chr19	-	549	5	FSM	ENSMUSG00000054523.14	ENSMUST00000188335.7	549	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.82915619758885	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGATGCCAGTCCTGCTT	9164	False	NA	NA	False	AGTAAA	-18	NA	11257018	11251524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_11251663_11253973_11254127_11255049_11255107_11256613_11256743_11256946
transcript_46824.known	chr19	+	1162	4	FSM	ENSMUSG00000024683.7	ENSMUST00000167199.3	1162	4	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_3	22.4499443206436	2674	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCTTATCTCCGGACCT	161	False	NA	NA	False	NA	NA	NA	11747754	11752324	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_11747889_11748165_11748232_11750238_11750388_11751511
transcript_46828.known	chr19	-	2810	11	FSM	ENSMUSG00000041488.17	ENSMUST00000069285.6	2810	11	0	0	0	0	multi-exon	FALSE	canonical	3	392	junction_5	58.7316779940774	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGGGGCCATCTCTCTG	7137	False	NA	-8	True	AATAAA	-25	NA	11796306	11754848	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_11756538_11758930_11759045_11760389_11760501_11762753_11762889_11763048_11763123_11763888_11763998_11765532_11765601_11766920_11766996_11769109_11769210_11780857_11780942_11796055
transcript_4683.known	chr1	+	787	3	FSM	ENSMUSG00000058267.14	ENSMUST00000097193.3	787	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	1371.5	510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGAAAGTATGGTCTTTC	NA	False	NA	9	True	AATAAA	-9	NA	160022872	160027382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_160023116_160024515_160024675_160026997
transcript_46830.known	chr19	+	4216	19	FSM	ENSMUSG00000046139.9	ENSMUST00000061618.9	4216	19	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_1	27.8366043764299	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGATAGATGTCCATCTCT	NA	False	NA	21	True	AATAAA	-11	NA	11889762	11922455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_11889942_11891711_11891824_11897541_11897760_11898168_11898250_11898732_11898928_11899830_11899933_11900750_11900841_11901164_11901383_11902500_11902591_11907238_11907420_11908896_11909021_11909501_11909600_11911043_11911104_11913042_11913192_11914583_11914744_11917047_11917204_11919992_11920085_11920188_11920339_11920694
transcript_46832.known	chr19	+	4488	14	FSM	ENSMUSG00000024687.12	ENSMUST00000025590.11	4488	14	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_3	15.1325504406969	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATTGTCTGATTTGCTTC	NA	False	NA	9	True	ATTAAA	-16	NA	11943304	11971476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_11943661_11948050_11948260_11951021_11951273_11955165_11955365_11955600_11955704_11955994_11956050_11956232_11956365_11961267_11961514_11961755_11961877_11965712_11965817_11966568_11966665_11967964_11968147_11968958_11969180_11969263
transcript_46838.known	chr19	-	1073	2	FSM	ENSMUSG00000079415.3	ENSMUST00000112933.2	1073	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTTAGTGCTTTACCCTT	NA	False	NA	NA	False	AATAAA	-24	NA	12742996	12741023	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_12741745_12742644
transcript_46841.nnic	chr19	+	561	2	Intergenic	novelGene_68	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	5	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCGTGTGTATGCTTTTT	NA	False	NA	NA	False	GATAAA	-26	NA	14632739	14660346	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr19_+_14632923_14659968
transcript_46846.known	chr19	-	2291	9	FSM	ENSMUSG00000024640.10	ENSMUST00000162053.8	2291	9	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_8	1098.17038181696	2735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCATTGCCTGTGAATTAT	NA	False	NA	-14	True	ATTAAA	-20	NA	15901986	15882490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15901667
transcript_46847.known	chr19	-	1572	3	FSM	ENSMUSG00000024640.10	ENSMUST00000161707.2	1572	3	0	0	0	0	multi-exon	FALSE	canonical	3	2829	junction_2	366	893	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	-17	True	ATTAAA	-17	NA	15887076	15882493	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_15883516_15884293_15884432_15886664
transcript_46849.known	chr19	-	2548	15	FSM	ENSMUSG00000041491.9	ENSMUST00000047704.8	2548	15	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_1	15.9123876785558	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTATATTGAGTGATAAAAT	175	False	NA	NA	False	AATAAA	-16	NA	15962353	15933137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_15933768_15936895_15937065_15938306_15938474_15939735_15939814_15946435_15946565_15947896_15947943_15948259_15948396_15951719_15951832_15952251_15952317_15953612_15953727_15956144_15956320_15958455_15958560_15958828_15958902_15958991_15959165_15961976
transcript_4685.known	chr1	+	2999	3	FSM	ENSMUSG00000058267.14	ENSMUST00000135680.8	2999	3	0	0	0	0	multi-exon	FALSE	canonical	3	2655	junction_1	51	9371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTAGGGTTGATCTGGCT	NA	False	NA	NA	False	AATAAA	-24	NA	160022784	160029740	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_160022882_160024515_160024675_160026997
transcript_46853.nic	chr19	-	941	4	ISM	ENSMUSG00000041491.9	ENSMUST00000047704.8	2548	15	-24	25128	-24	-24921	5prime_fragment	FALSE	canonical	3	142	junction_3	11.1455023315337	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCATGAATACTTGTTATT	151	False	NA	NA	False	AATAAA	-18	NA	15962377	15958265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_-_15958560_15958828_15958902_15958991_15959165_15961976
transcript_46855.nnic	chr19	+	1435	3	Intergenic	novelGene_69	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCCCGCCTGTCTCTCTT	NA	False	NA	NA	False	NA	NA	NA	16000478	16013501	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr19_+_16001679_16005957_16006037_16013345
transcript_46861.known	chr19	+	267	1	FSM	ENSMUSG00000117711.2	ENSMUST00000235413.2	267	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGATTTCAATCAGTCAT	NA	False	NA	NA	False	NA	NA	NA	16002814	16003081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_16002800_16003100
transcript_46862.known	chr19	+	5644	7	FSM	ENSMUSG00000024639.6	ENSMUST00000025541.6	5644	7	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_6	6.07590871118606	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCGCTGCTCTTCTTAAAA	NA	False	NA	20	True	AATAAA	-24	NA	16110194	16364827	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_16110826_16196951_16197137_16293380_16293536_16309440_16309570_16312344_16312475_16355520_16355675_16360567
transcript_46863.known	chr19	+	3290	7	FSM	ENSMUSG00000024697.5	ENSMUST00000025602.4	3290	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	2.3392781412697	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACAGCTTCTTTGATTCCT	NA	False	NA	NA	False	AAGAAA	-19	NA	16413125	16588184	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_16414182_16511076_16511262_16576303_16576459_16580627_16580757_16582326_16582457_16585346_16585501_16586703
transcript_46866.nic	chr19	-	1153	11	ISM	ENSMUSG00000046230.12	ENSMUST00000224428.2	2689	19	-114	11912	-93	-4957	5prime_fragment	FALSE	canonical	3	29	junction_4	6.00333240792145	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACATTTAGATTGACTTAC	NA	False	NA	NA	False	AATAAA	-21	NA	16758390	16723300	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_-_16723443_16726889_16726948_16727210_16727292_16727485_16727546_16729482_16729543_16731615_16731726_16736950_16737053_16737304_16737401_16739512_16739556_16743860_16743905_16758033
transcript_46867.nic	chr19	-	620	5	ISM	ENSMUSG00000046230.12	ENSMUST00000225764.2	2591	6	-93	7289	-93	-7289	5prime_fragment	FALSE	canonical	3	36	junction_2	3.49106001094224	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAGAAAGTATTTGATAA	NA	False	NA	NA	False	AATAGA	-8	NA	16758390	16736972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_-_16737053_16737304_16737401_16739512_16739556_16743860_16743905_16758033
transcript_46869.known	chr19	-	10838	72	FSM	ENSMUSG00000046230.12	ENSMUST00000068156.8	10838	72	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_58	9.97459578127363	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGGTCAATGGATATTT	NA	False	NA	-27	True	CATAAA	-16	NA	16758291	16593049	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_16594280_16596457_16596533_16596741_16596866_16597987_16598074_16613132_16613245_16617353_16617478_16617565_16617612_16617900_16618065_16618147_16618224_16618921_16619036_16621112_16621195_16623212_16623359_16624956_16625071_16628782_16628889_16630050_16630121_16631204_16631287_16631704_16631852_16632572_16632724_16633222_16633456_16635967_16636098_16637811_16637946_16638360_16638490_16641115_16641263_16641371_16641477_16641872_16642269_16643517_16643801_16645961_16646066_16653409_16653571_16655217_16655474_16655608_16655768_16657373_16657476_16659233_16659591_16660147_16660241_16662641_16662875_16663792_16664008_16664447_16664618_16665310_16665436_16669110_16669262_16672822_16672971_16676171_16676477_16678484_16678653_16680867_16680972_16681051_16681169_16681895_16682050_16683238_16683299_16684690_16684771_16687634_16687792_16688150_16688306_16692412_16692492_16697692_16697832_16699758_16699877_16701003_16701137_16702920_16703058_16712078_16712194_16712278_16712466_16718126_16718270_16718540_16718636_16719802_16719933_16720359_16720423_16722149_16722322_16723024_16723132_16723314_16723443_16726889_16726948_16727210_16727292_16727485_16727546_16729482_16729543_16731615_16731726_16736950_16737053_16737304_16737401_16739512_16739556_16743860_16743905_16758033
transcript_46872.known	chr19	+	1803	9	FSM	ENSMUSG00000039126.11	ENSMUST00000223920.2	1803	9	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_3	14.3352711868315	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTAACACTCAGATGCA	NA	False	NA	NA	False	NA	NA	NA	17114129	17198948	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_17114256_17145626_17145707_17156153_17156355_17170619_17170794_17176476_17176580_17177144_17177277_17179005_17179093_17185594_17185694_17198147
transcript_46876.nic	chr19	+	1181	8	ISM	ENSMUSG00000039126.11	ENSMUST00000223920.2	1803	9	-16	13092	-16	-1639	5prime_fragment	FALSE	canonical	3	57	junction_3	14.2427926635594	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTATTCTTTCAGATCCT	NA	False	NA	14	True	AATAAA	-26	NA	17114113	17185856	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_+_17114256_17145626_17145707_17156153_17156355_17170619_17170794_17176476_17176580_17177144_17177277_17179005_17179093_17185594
transcript_46883.nnic	chr19	+	1007	7	NIC	ENSMUSG00000039126.11	novel	1803	9	NA	NA	-16	-1639	combination_of_known_splicesites	FALSE	canonical	3	21	junction_3	26.0560293726167	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTATTCTTTCAGATCCT	NA	False	NA	14	True	AATAAA	-26	NA	17114113	17185856	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_+_17114256_17145626_17145707_17156153_17156355_17176476_17176580_17177144_17177277_17179005_17179093_17185594
transcript_46887.nnic	chr19	+	554	4	NNC	ENSMUSG00000039126.11	novel	946	4	NA	NA	-16	-10724	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	44.3045019031801	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACTTCCTGTCTGTTATT	NA	False	NA	NA	False	NA	NA	NA	17114113	17160443	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_17114256_17145626_17145707_17156153_17156355_17160312
transcript_46888.known	chr19	+	946	4	FSM	ENSMUSG00000039126.11	ENSMUST00000224602.2	946	4	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_3	18.6964048831735	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAGATGAGCAGATATTGC	NA	False	NA	NA	False	NA	NA	NA	17114138	17171167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_17114256_17145626_17145707_17156153_17156355_17170619
transcript_46893.known	chr19	-	4606	3	FSM	ENSMUSG00000038843.19	ENSMUST00000174236.8	4606	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	7	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTATGTCTGCACACATTA	8034	False	NA	2	True	AATAAA	-21	NA	17334031	17303504	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_17307853_17310473_17310621_17333920
transcript_46895.known	chr19	-	1122	2	FSM	ENSMUSG00000038843.19	ENSMUST00000174137.2	1122	2	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAAAAAGAAGAAAAAGAA	8034	False	NA	NA	False	NA	NA	NA	17334031	17309609	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_17310621_17333920
transcript_46896.known	chr19	+	2482	4	FSM	ENSMUSG00000024712.10	ENSMUST00000025617.4	2482	4	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_3	47.0744091837593	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGAATCCTGTATCTGTTT	1324	False	NA	19	True	AATAAA	-34	NA	17371406	17378713	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_17371757_17372561_17372714_17375941_17376045_17376836
transcript_46906.known	chr19	-	2726	10	FSM	ENSMUSG00000024725.14	ENSMUST00000025631.7	2726	10	0	0	0	0	multi-exon	FALSE	canonical	3	989	junction_2	42.8315679128904	1589	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTAATTTTGTGTCACTG	NA	False	NA	NA	False	TTTAAA	-4	NA	18609153	18556691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_18558693_18562005_18562108_18563910_18563990_18567068_18567119_18567764_18567873_18569946_18570001_18571219_18571284_18573714_18573766_18581529_18581577_18608983
transcript_46942.nnic	chr19	+	2184	10	NNC	ENSMUSG00000037847.15	novel	1768	10	NA	NA	-40	20	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_8	32.8389260136259	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACTGTTACATTGCCTCA	NA	False	NA	NA	False	AATAAA	-36	NA	18609273	18629812	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_18609446_18613442_18613507_18616881_18616973_18617249_18617299_18618487_18618636_18618766_18618839_18619537_18619645_18622418_18622503_18625715_18625900_18628599
transcript_46950.known	chr19	+	1940	9	FSM	ENSMUSG00000037847.15	ENSMUST00000237347.2	1940	9	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_8	10.6880482315528	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTCTCAATTCATACAAAA	NA	False	NA	NA	False	AATAAA	-16	NA	18609313	18629792	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_18609446_18613442_18613507_18616881_18616973_18617249_18617299_18618487_18618636_18618766_18618839_18619537_18619645_18622418_18622503_18628599
transcript_46955.known	chr19	+	1357	9	FSM	ENSMUSG00000037847.15	ENSMUST00000042392.14	1357	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	28.1913107180209	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATACTGTGTGTCTCTGT	NA	False	NA	NA	False	CATAAA	-16	NA	18609313	18629291	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_18609364_18613442_18613507_18616881_18616973_18617249_18617299_18618487_18618636_18618766_18618839_18619537_18619645_18622418_18622503_18628599
transcript_46965.known	chr19	+	1341	2	FSM	ENSMUSG00000037847.15	ENSMUST00000162446.2	1341	2	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	0	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	18609325	18614663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_18609446_18613442
transcript_46966.known	chr19	+	4518	8	FSM	ENSMUSG00000024726.11	ENSMUST00000025632.11	4518	8	0	0	0	0	multi-exon	FALSE	canonical	3	696	junction_5	231.025928397305	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTGTCTCACAGCTTCAC	NA	False	NA	16	True	NA	NA	NA	18648127	18684564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_18648567_18655051_18655248_18656467_18656632_18667593_18667735_18668780_18668960_18671012_18671127_18680724_18680829_18681383
transcript_46970.known	chr19	+	1714	8	FSM	ENSMUSG00000024726.11	ENSMUST00000235736.2	1714	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	444.181981459245	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTGGTGCCTTCTTATTC	NA	False	NA	NA	False	AATAAA	-45	NA	18648242	18681586	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_18648856_18655051_18655248_18656467_18656632_18667593_18667735_18668780_18668960_18671012_18671127_18680724_18680829_18681383
transcript_46974.known	chr19	+	1631	2	FSM	ENSMUSG00000047044.8	ENSMUST00000055792.8	1631	2	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	0	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTATGTATCAGTGACTAA	9357	False	NA	26	True	AATAAA	-19	NA	18690599	18695792	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_18691024_18694585
transcript_46976.known	chr19	-	1674	13	FSM	ENSMUSG00000024659.16	ENSMUST00000025561.8	1674	13	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	3.1446603773522	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTGTCATTGTCTCTC	7005	False	NA	2	True	AATAAA	-23	NA	20368308	20350791	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_20351135_20352588_20352712_20354015_20354075_20354970_20355067_20355759_20355854_20357012_20357070_20357703_20357784_20359413_20359505_20360225_20360340_20361120_20361216_20361838_20361948_20362056_20362137_20367975
transcript_46977.known	chr19	+	7385	6	FSM	ENSMUSG00000024750.12	ENSMUST00000237651.2	7385	6	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_1	12.0166551086398	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGAGGGGGTTGGATCCC	NA	False	NA	NA	False	NA	NA	NA	21249641	21264204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_21250107_21253789_21253950_21254341_21254454_21255018_21255123_21256988_21257115_21257786
transcript_46980.nnic	chr19	-	1491	4	NNC	ENSMUSG00000035171.10	novel	1614	4	NA	NA	-138406	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	88.3377357393518	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTGTCTTGTTGTTGT	NA	False	NA	NA	False	AATAAA	-21	NA	21768746	21574675	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_21575699_21576118_21576233_21581652_21581681_21768420
transcript_46981.known	chr19	-	1614	4	FSM	ENSMUSG00000035171.10	ENSMUST00000038830.10	1614	4	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_1	6.94422221866655	1557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTGTCTTGTTGTTGT	453	False	NA	NA	False	AATAAA	-21	NA	21630340	21574675	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_21575699_21576118_21576233_21596472_21596580_21629970
transcript_46983.known	chr19	-	942	3	FSM	ENSMUSG00000035171.10	ENSMUST00000179553.2	942	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	89.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAACCCAACCTTCATAC	629	False	NA	NA	False	AATATA	-43	NA	21630164	21575064	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_21575699_21576118_21576233_21629970
transcript_46984.nnic	chr19	-	1335	3	NNC	ENSMUSG00000035171.10	novel	1614	4	NA	NA	-138253	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	97	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTGTCTTGTTGTTGT	NA	False	NA	NA	False	AATAAA	-21	NA	21768593	21574675	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_21575699_21576118_21576233_21768395
transcript_46987.nnic	chr19	-	1749	3	NNC	ENSMUSG00000035171.10	novel	1614	4	NA	NA	-138244	0	intron_retention	FALSE	non_canonical	0	0	junction_2	7	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTGTCTTGTTGTTGT	NA	False	NA	NA	False	AATAAA	-21	NA	21768584	21574675	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_21576233_21581652_21581681_21768420
transcript_46988.known	chr19	-	962	3	FSM	ENSMUSG00000035171.10	ENSMUST00000179768.8	962	3	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_2	1.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACCAGACGCTCCAGAAAA	512	False	NA	NA	False	AATAAA	-1	NA	21630281	21575688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_21576233_21596472_21596580_21629970
transcript_46989.known	chr19	-	629	2	FSM	ENSMUSG00000035171.10	ENSMUST00000178523.2	629	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAGCAATCCTCCCTGAA	512	False	NA	NA	False	NA	NA	NA	21630281	21575914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_21576233_21629970
transcript_4699.known	chr1	-	2098	6	FSM	ENSMUSG00000014226.11	ENSMUST00000014370.11	2098	6	0	0	0	0	multi-exon	FALSE	canonical	3	4235	junction_5	193.777810907235	17217	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTAAAAAAAAAAAAAGGA	7296	False	NA	NA	False	TATAAA	-11	NA	160040445	160029936	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_160031294_160032537_160032636_160033665_160033766_160034182_160034280_160035948_160036166_160040216
transcript_46991.known	chr19	+	2259	4	FSM	ENSMUSG00000047368.5	ENSMUST00000052556.5	2259	4	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_3	15.3260852434302	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCGGCTGTGCTTGTGTGC	NA	False	NA	12	True	AGTAAA	-15	NA	21630888	21663001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_21630958_21655716_21656187_21658231_21658412_21661461
transcript_46993.known	chr19	+	6602	24	FSM	ENSMUSG00000024754.14	ENSMUST00000025663.8	6602	24	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	16.2129029807244	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTCTCAGATTCTAGCTTT	NA	False	NA	53	True	NA	NA	NA	21755721	21835724	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_21756151_21770001_21770345_21774690_21774832_21775230_21775793_21779225_21779396_21784722_21784912_21786632_21786803_21789130_21789341_21789574_21789781_21789914_21789985_21792794_21792924_21795286_21795376_21801151_21801284_21802453_21802490_21803403_21803560_21807163_21807342_21809390_21809607_21812781_21812991_21819404_21819588_21821983_21822204_21825300_21825400_21829588_21829744_21833022_21833127_21833518
transcript_470.known	SIRV6	+	1528	10	FSM	SIRV6A	SIRV612	1528	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	7772.9807349673	5698	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAGACCGGGAGTATACT	NA	False	NA	NA	False	NA	NA	NA	1087	11825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
transcript_4700.known	chr1	+	1874	1	FSM	ENSMUSG00000103006.2	ENSMUST00000193962.2	1874	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAATAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	160040512	160042386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_160040500_160042400
transcript_47028.nnic	chr19	-	838	4	NNC	ENSMUSG00000097930.3	novel	816	2	NA	NA	0	12324	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	4.64279609239471	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGGTTTCCAAAGTCCT	4890	False	NA	NA	False	AATAAA	-21	NA	23053288	23002429	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_23002874_23003630_23003701_23028913_23029070_23053120
transcript_47032.nnic	chr19	-	1073	3	NIC	ENSMUSG00000097930.3	novel	816	2	NA	NA	-91	10	intron_retention	FALSE	canonical	0	0	junction_1	2.5	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAGAGAGCCACAGACATT	4799	False	NA	NA	False	AAAAAG	-12	NA	23053379	22955583	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_22956242_23028913_23029070_23053120
transcript_47033.nnic	chr19	-	1119	3	NNC	ENSMUSG00000097930.3	novel	816	2	NA	NA	-17889	10	intron_retention	FALSE	canonical	0	0	junction_1	0.5	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAGAGAGCCACAGACATT	4739	False	NA	NA	False	AAAAAG	-12	NA	23071177	22955583	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_22956242_23028913_23029070_23070872
transcript_47036.known	chr19	+	414	2	FSM	ENSMUSG00000044387.6	ENSMUST00000142712.2	414	2	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	0	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAAGAAACATCGCTAG	NA	False	NA	NA	False	NA	NA	NA	23112263	23113081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_23112319_23112722
transcript_47037.nnic	chr19	+	559	2	NNC	ENSMUSG00000044387.6	novel	414	2	NA	NA	-48	11	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	0	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCGCTAGAGTTACGAAAC	NA	False	NA	NA	False	NA	NA	NA	23112215	23113092	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_23112405_23112722
transcript_47039.nnic	chr19	+	641	2	Fusion	ENSMUSG00000044387.6_ENSMUSG00000033863.3	novel	414	2	NA	NA	-85	-288	multi-exon	FALSE	canonical	3	42	junction_1	0	59	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTTTGTTTTTGGGGGA	NA	False	NA	NA	False	AATAAA	-15	NA	23112178	23142547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr19_+_23112319_23142046
transcript_47040.nnic	chr19	+	911	2	Fusion	ENSMUSG00000044387.6_ENSMUSG00000033863.3	novel	414	2	NA	NA	-85	-18	multi-exon	FALSE	canonical	3	42	junction_1	0	192	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAACAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	23112178	23142817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr19_+_23112319_23142046
transcript_47041.nnic	chr19	+	1649	2	Fusion	ENSMUSG00000044387.6_ENSMUSG00000033863.3	novel	414	2	NA	NA	-85	720	multi-exon	FALSE	canonical	3	42	junction_1	0	93	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGCCCCTGTAAGTAGTA	NA	False	NA	31	True	NA	NA	NA	23112178	23143555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr19_+_23112319_23142046
transcript_47043.nnic	chr19	+	680	2	Fusion	ENSMUSG00000044387.6_ENSMUSG00000033863.3	novel	414	2	NA	NA	-43	-293	multi-exon	FALSE	canonical	3	9	junction_1	0	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTTCTCCTTTGTTTTTG	NA	False	NA	NA	False	AATAAA	-10	NA	23112220	23142542	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr19_+_23112405_23142046
transcript_47046.known	chr19	+	4486	2	FSM	ENSMUSG00000033863.3	ENSMUST00000036884.3	4486	2	0	0	0	0	multi-exon	FALSE	canonical	3	482	junction_1	0	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCCATTACGTTCTTCCA	NA	False	NA	NA	False	AATAAA	-29	NA	23118589	23145498	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_23119624_23142046
transcript_47049.known	chr19	-	3448	24	FSM	ENSMUSG00000024943.10	ENSMUST00000223934.2	3448	24	0	0	0	0	multi-exon	FALSE	canonical	2	185	junction_5	71.1727842464471	1630	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTTATTTTTGGAAACCT	NA	False	NA	4	True	AATAAA	-29	NA	23251261	23186086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_23186333_23187614_23187711_23187787_23187968_23191114_23191235_23191429_23191535_23192005_23192105_23195768_23195895_23205537_23205661_23206278_23206403_23208921_23209092_23209182_23209357_23211326_23211460_23213237_23213333_23216248_23216363_23219999_23220155_23221218_23221475_23232040_23232113_23234851_23235014_23237010_23237152_23238696_23238832_23240967_23241131_23243029_23243083_23246090_23246233_23250997
transcript_47052.nnic	chr19	-	2495	16	NNC	ENSMUSG00000024943.10	novel	5683	25	NA	NA	-22	-15569	at_least_one_novel_splicesite	FALSE	canonical	2	17	junction_1	103.870346533016	1673	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTTCTTTCCTGCATTTT	NA	False	NA	NA	False	AATAAA	-6	NA	23251283	23207667	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_23207912_23208921_23209092_23209182_23209357_23211326_23211460_23213237_23213333_23216248_23216363_23219999_23220155_23221218_23221475_23232040_23232113_23234851_23235014_23237010_23237152_23238696_23238832_23240967_23241131_23243029_23243083_23246090_23246233_23250997
transcript_47056.known	chr19	+	571	1	FSM	ENSMUSG00000044424.5	ENSMUST00000104916.4	571	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1822	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAATGACTGAATAAAG	NA	False	NA	NA	False	NA	NA	NA	23597112	23597683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_23597100_23597700
transcript_47057.nnic	chr19	+	853	2	Genic_Genomic	ENSMUSG00000051255.7	novel	633	1	NA	NA	-29	260	multi-exon	FALSE	canonical	3	409	junction_1	0	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAAAGAAACAGCGGAT	NA	False	NA	NA	False	NA	NA	NA	23653182	23654104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr19_+_23653644_23653712
transcript_47058.known	chr19	+	633	1	FSM	ENSMUSG00000051255.7	ENSMUST00000056396.7	633	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	681	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAAGTTCGTGCTTTCTG	NA	False	NA	NA	False	AAAAAG	-26	NA	23653211	23653844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_23653200_23653800
transcript_47060.known	chr19	+	12574	7	FSM	ENSMUSG00000074925.5	ENSMUST00000237333.2	12574	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	3.54338193757822	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTAAGATTTATTCATTT	NA	False	NA	19	True	AATAAA	-26	NA	23664792	23709032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_23664910_23671684_23671855_23680441_23680509_23683070_23683176_23686117_23686332_23695176_23695467_23697421
transcript_47067.nnic	chr19	-	1051	5	NNC	ENSMUSG00000118340.2	novel	1701	4	NA	NA	-14056	22542	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	6.36396103067893	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCCCTACAGTCATACA	NA	False	NA	NA	False	AATAAA	-39	NA	23933014	23884646	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_23885008_23885116_23885214_23913755_23914033_23914668_23914894_23932923
transcript_47069.known	chr19	-	4668	23	FSM	ENSMUSG00000024812.12	ENSMUST00000233027.2	4668	23	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_22	83.9099280958925	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATAAAAATGTGTGTATGA	NA	False	NA	NA	False	ATTAAA	-16	NA	24151553	24071868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_24072955_24073947_24074034_24075364_24075680_24076816_24076928_24078065_24078279_24079260_24079362_24086008_24086220_24087094_24087175_24088384_24088481_24088789_24088984_24090109_24090321_24091439_24091549_24097308_24097460_24098200_24098268_24099388_24099523_24099626_24099736_24101931_24102086_24103068_24103173_24108218_24108838_24109969_24110073_24112213_24112339_24116142_24116197_24151318
transcript_47070.nic	chr19	-	599	5	ISM	ENSMUSG00000024812.12	ENSMUST00000232956.2	4728	24	62	38023	58	0	5prime_fragment	TRUE	canonical	0	0	junction_4	166.67408316832	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATTAAAAAACAAAATCTT	NA	False	NA	NA	False	NA	NA	NA	24202332	24109891	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_-_24110073_24112213_24112339_24116142_24116197_24171072_24171194_24202214
transcript_47072.known	chr19	-	1114	5	FSM	ENSMUSG00000059363.11	ENSMUST00000081333.11	1114	5	0	0	0	0	multi-exon	FALSE	canonical	3	359	junction_4	29.2018835008977	600	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAATGTCTTACACTGTG	NA	False	NA	NA	False	AAGAAA	-45	NA	24257969	24238816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_24239418_24244665_24244764_24249710_24249832_24254544_24254640_24257770
transcript_47073.known	chr19	-	1072	5	FSM	ENSMUSG00000059363.11	ENSMUST00000123684.2	1072	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	173.887894920837	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAAAGAAAGTCTTACA	NA	False	NA	NA	False	NA	NA	NA	24257932	24238864	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_24239418_24244665_24244764_24249667_24249832_24254544_24254640_24257770
transcript_47075.known	chr19	-	2573	15	FSM	ENSMUSG00000024867.15	ENSMUST00000025800.15	2573	15	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_9	5.473498303048	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGGTCATACATTGATTC	NA	False	NA	0	True	AATAAA	-16	NA	24533236	24272157	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_24272919_24281395_24281511_24323600_24323746_24327497_24327654_24332481_24332567_24335393_24335443_24335574_24335659_24337303_24337516_24356165_24356466_24359051_24359205_24367707_24367826_24374379_24374511_24416416_24416486_24420965_24421053_24533128
transcript_47077.known	chr19	+	946	1	FSM	ENSMUSG00000058927.7	ENSMUST00000073080.7	946	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6668	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTATAGTTGATCTGCAAA	NA	False	NA	NA	False	AATAAA	-16	NA	24853049	24853995	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_24853000_24854000
transcript_47079.nic	chr19	-	1509	15	NIC	ENSMUSG00000024878.10	novel	1929	15	NA	NA	-15	-511	combination_of_known_junctions	FALSE	canonical	3	7	junction_14	49.7256247331498	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATCCTCTGGAGGTTTTT	NA	False	NA	-32	True	AGTAAA	-32	NA	24938989	24897790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_24898067_24898384_24898515_24899960_24900027_24900119_24900189_24905690_24905740_24909027_24909085_24915759_24915805_24918112_24918200_24920046_24920094_24925432_24925471_24926565_24926626_24930623_24930716_24932699_24932797_24935267_24935355_24938680
transcript_47080.known	chr19	-	1929	15	FSM	ENSMUSG00000024878.10	ENSMUST00000025815.10	1929	15	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_14	17.2858618647773	650	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATAGTGTGATGGTACTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	24938965	24897279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_24898067_24898384_24898515_24899960_24900027_24900119_24900189_24905690_24905740_24909027_24909085_24915759_24915805_24918112_24918200_24920046_24920094_24925432_24925471_24926565_24926626_24930623_24930716_24932699_24932797_24935267_24935355_24938747
transcript_47094.nic	chr19	+	1494	2	ISM	ENSMUSG00000052085.8	ENSMUST00000025831.8	7805	48	200704	259	44426	-259	3prime_fragment	FALSE	canonical	2	2	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTTCCCTGTGCCACTGC	2517	False	NA	NA	False	NA	NA	NA	25177601	25179537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_+_25177909_25178350
transcript_47095.known	chr19	+	5637	14	FSM	ENSMUSG00000032702.17	ENSMUST00000049400.15	5637	14	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	16.8104644783043	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGCTTGCCCCTGCTTCA	NA	False	NA	6	True	AATAAA	-15	NA	25214338	25411860	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_25214682_25252111_25252199_25295668_25295797_25355774_25355895_25386449_25389129_25399507_25399706_25400282_25400392_25401501_25401748_25403260_25403349_25405340_25405561_25407584_25407728_25408242_25408444_25410228_25410328_25410884
transcript_47096.known	chr19	+	2340	5	FSM	ENSMUSG00000024837.16	ENSMUST00000025755.11	2340	5	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_3	4.08503365959205	816	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTGTGTGTATATTTG	NA	False	NA	12	True	AATAAA	-20	NA	25482981	25581693	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_25483566_25487043_25487228_25523182_25523467_25537230_25537376_25580550
transcript_47100.known	chr19	+	1130	4	FSM	ENSMUSG00000024837.16	ENSMUST00000087525.5	1130	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	61.5304802516606	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTGTAGGATCCCAGACT	NA	False	NA	NA	False	AAAACA	-7	NA	25483069	25580855	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_25483566_25487043_25487228_25537230_25537376_25580550
transcript_47102.nnic	chr19	+	1666	4	NNC	ENSMUSG00000024837.16	novel	2340	5	NA	NA	16505	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	59.23024752795	661	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTGTGTGTATATTTG	NA	False	NA	12	True	AATAAA	-20	NA	25499575	25581693	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_25499670_25523182_25523467_25537230_25537376_25580550
transcript_47105.nic	chr19	+	1612	2	ISM	ENSMUSG00000024837.16	ENSMUST00000160814.2	1362	4	-84	49553	5	-49553	5prime_fragment	FALSE	canonical	3	132	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTCCCTCAAATAGTTG	NA	False	NA	NA	False	NA	NA	NA	25482986	25488076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_+_25483566_25487043
transcript_47106.known	chr19	-	474	2	FSM	ENSMUSG00000101089.2	ENSMUST00000185211.2	474	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCCTGTAGATTTTTTTC	NA	False	NA	NA	False	TATAAA	-15	NA	25649603	25648497	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_25648810_25649441
transcript_47107.known	chr19	-	515	2	FSM	ENSMUSG00000101089.2	ENSMUST00000188711.2	515	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAATATCCAGTTAATGTA	NA	False	NA	NA	False	NA	NA	NA	25649586	25648535	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_25648906_25649441
transcript_47108.known	chr19	-	503	3	FSM	ENSMUSG00000118001.2	ENSMUST00000237584.2	503	3	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_2	2.5	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTCACGTGTATGCAGA	NA	False	NA	NA	False	NA	NA	NA	26461850	26460956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_26461343_26461656_26461733_26461809
transcript_47114.nnic	chr19	+	2092	10	NNC	ENSMUSG00000024921.18	novel	876	7	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_4	11.2095638179036	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATGTGGTGTTGGTACT	NA	False	NA	15	True	AATAAA	-16	NA	26693292	26755673	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_26693393_26693514_26693593_26698128_26698348_26729223_26729442_26737277_26737332_26748337_26748444_26748907_26749010_26751572_26751706_26753500_26753644_26754734
transcript_47115.nnic	chr19	+	2038	9	NNC	ENSMUSG00000024921.18	novel	876	7	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	7.69740215917033	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATGTGGTGTTGGTACT	NA	False	NA	15	True	AATAAA	-16	NA	26693292	26755673	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_26693393_26693514_26693593_26698128_26698348_26729223_26729442_26748337_26748444_26748907_26749010_26751572_26751706_26753500_26753644_26754734
transcript_47126.known	chr19	-	2179	18	FSM	ENSMUSG00000041360.9	ENSMUST00000235859.2	2179	18	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	491.227662003022	814	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGCTCTGTGGTTGAATG	NA	False	NA	67	True	NA	NA	NA	27407220	27367376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_27367714_27371637_27371729_27373694_27373783_27376281_27376501_27377078_27377222_27389581_27389663_27393285_27393340_27394134_27394234_27396194_27396274_27397417_27397518_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436_27404529_27407191
transcript_47142.known	chr19	-	1721	11	FSM	ENSMUSG00000041360.9	ENSMUST00000235297.2	1721	11	0	0	0	0	multi-exon	FALSE	canonical	3	1425	junction_3	83.6366546437625	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAATGTGGTTTTTTTTTT	NA	False	NA	NA	False	ATTAAA	-21	NA	27404509	27392740	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_27393340_27394134_27394234_27396194_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436
transcript_47143.known	chr19	-	2743	17	FSM	ENSMUSG00000040929.18	ENSMUST00000174850.8	2743	17	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_16	2.87160125191504	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATTGTTGATTGTTAGT	NA	False	NA	NA	False	ATTAAA	-30	NA	27988540	27745538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_27746094_27748028_27748072_27764013_27764168_27771010_27771220_27777516_27777667_27779781_27779880_27783587_27783743_27784192_27784309_27790977_27791091_27792884_27793007_27803432_27803553_27808010_27808193_27814806_27814882_27827110_27827370_27844912_27845011_27878178_27878304_27988371
transcript_47145.known	chr19	-	393	1	FSM	ENSMUSG00000067351.2	ENSMUST00000087473.2	393	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATGTAAAGCATAAATAAAAA	NA	False	NA	NA	False	AAAACA	-35	NA	28719951	28719558	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_28719600_28720000
transcript_47146.known	chr19	+	3800	12	FSM	ENSMUSG00000024935.12	ENSMUST00000025875.5	3800	12	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_8	5.75246982529323	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCTGCCTCTCATCTGT	NA	False	NA	17	True	AATAAA	-27	NA	28812473	28891360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_28812733_28856412_28856554_28870234_28870328_28871853_28871969_28873483_28873527_28874906_28875003_28878841_28879027_28880085_28880194_28882011_28882135_28882732_28882928_28886830_28886966_28889053
transcript_47149.known	chr19	+	1762	10	FSM	ENSMUSG00000024935.12	ENSMUST00000161119.8	1762	10	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_8	6.33820475420074	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAGACAAAGGATAAG	NA	False	NA	NA	False	GATAAA	-22	NA	28812534	28883392	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_28812733_28856412_28856554_28870234_28870328_28871853_28871969_28873483_28873527_28874906_28875003_28878841_28879027_28880085_28880194_28882011_28882135_28882732
transcript_47151.known	chr19	+	4079	7	FSM	ENSMUSG00000024780.8	ENSMUST00000225310.2	4079	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	62.7147421974203	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGTATCTGTAACATTTCT	3821	False	NA	NA	False	ATTAAA	-28	NA	28967751	28993171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_28968070_28972440_28972723_28976660_28976752_28984371_28984488_28984972_28985096_28989288_28989454_28990187
transcript_47152.known	chr19	+	5179	7	FSM	ENSMUSG00000024780.8	ENSMUST00000050148.5	5179	7	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_6	22.9449825064702	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTAGTTATGATTTTGTC	3969	False	NA	11	True	AATAAA	-22	NA	28967899	28997637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_28968070_28972440_28972723_28976660_28976752_28984371_28984488_28984972_28985096_28989288_28989454_28993405
transcript_47156.known	chr19	+	4163	6	FSM	ENSMUSG00000024780.8	ENSMUST00000225210.2	4163	6	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_5	18.3019124683734	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAGTAG	3836	False	NA	NA	False	ATTAAA	-27	NA	28967766	28992536	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_28968070_28972440_28972723_28976660_28976752_28984371_28984488_28984972_28985096_28989288
transcript_47158.known	chr19	-	2809	5	FSM	ENSMUSG00000024782.8	ENSMUST00000025696.5	2809	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	7.58287544405155	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCGGGCTGTCTCCATGTT	NA	False	NA	-1	True	AATAAA	-16	NA	29025361	28998232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_29000347_29003611_29003731_29004570_29004744_29015271_29015392_29025078
transcript_47159.nic	chr19	-	1006	4	ISM	ENSMUSG00000024782.8	ENSMUST00000025696.5	2809	5	0	5068	0	0	5prime_fragment	FALSE	canonical	3	29	junction_3	6.37704215656966	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCATTCTTATGAGACAGAA	NA	False	NA	NA	False	AGTAAA	-19	NA	29025361	29003300	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_-_29003731_29004570_29004744_29015271_29015392_29025078
transcript_47161.known	chr19	-	435	1	FSM	ENSMUSG00000063754.8	ENSMUST00000183196.2	435	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	491	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGACATCCCATGCACGG	9669	False	NA	NA	False	AATACA	-30	NA	28981242	28980807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_28980800_28981200
transcript_47162.known	chr19	+	1769	5	FSM	ENSMUSG00000024780.8	ENSMUST00000224599.2	1769	5	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_2	16.2692194035239	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAGAAGAAAAAGAAAGAAA	3954	False	NA	NA	False	NA	NA	NA	28967884	28986067	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_28968070_28972440_28972723_28976660_28976752_28984371_28984488_28984972
transcript_47164.known	chr19	+	618	2	FSM	ENSMUSG00000118038.2	ENSMUST00000235636.2	618	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	29044746	29046903	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_29044983_29046521
transcript_47168.known	chr19	+	1884	9	FSM	ENSMUSG00000024785.8	ENSMUST00000235900.2	1884	9	0	0	0	0	multi-exon	TRUE	canonical	3	6	junction_8	128.02514401476	799	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAATCTGGGATTTTATCT	NA	False	NA	113	True	NA	NA	NA	29078774	29121329	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_29079041_29093122_29093195_29095624_29095801_29098669_29098745_29099165_29099291_29105398_29105525_29108049_29108207_29111799_29111904_29120546
transcript_47171.known	chr19	-	708	2	FSM	ENSMUSG00000050957.5	ENSMUST00000052380.5	708	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTGCTTATATGTTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	29302756	29298743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_29299140_29302444
transcript_47172.known	chr19	-	745	2	FSM	ENSMUSG00000039097.6	ENSMUST00000044143.6	745	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATATGGATTTGTCCTTT	NA	False	NA	NA	False	NA	NA	NA	29312070	29309106	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_29309567_29311785
transcript_47174.known	chr19	-	1012	7	FSM	ENSMUSG00000016495.13	ENSMUST00000016639.12	1012	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	23.7323033484368	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAATCATGGCAGTATTC	NA	False	NA	-105	True	AATAAA	-15	NA	29339370	29326104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_29326406_29327759_29327870_29328443_29328575_29335716_29335804_29338216_29338328_29338441_29338540_29339196
transcript_47176.known	chr19	-	1020	6	FSM	ENSMUSG00000016495.13	ENSMUST00000143467.8	1020	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	10.1390334845093	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAATGTCCTGCTGCTTG	NA	False	NA	1	True	AATAAA	-21	NA	29339370	29325998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_29326406_29327759_29327870_29328443_29328575_29335716_29335804_29338216_29338328_29339196
transcript_47181.nnic	chr19	-	798	5	NIC	ENSMUSG00000016495.13	novel	1020	6	NA	NA	-6	0	combination_of_known_splicesites	FALSE	canonical	3	19	junction_2	17.2825779327044	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAATGTCCTGCTGCTTG	NA	False	NA	1	True	AATAAA	-21	NA	29339279	29325998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_29326406_29327759_29327870_29335716_29335804_29338216_29338328_29339196
transcript_47183.nnic	chr19	-	745	5	NIC	ENSMUSG00000016495.13	novel	1012	7	NA	NA	38	0	combination_of_known_splicesites	FALSE	canonical	3	19	junction_2	17.2825779327044	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAATCATGGCAGTATTC	NA	False	NA	-105	True	AATAAA	-15	NA	29339332	29326104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_29326406_29327759_29327870_29335716_29335804_29338216_29338328_29339196
transcript_47185.known	chr19	-	604	4	FSM	ENSMUSG00000016495.13	ENSMUST00000152936.8	604	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	25.1042271783503	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAAATTTCTCGTGTGTA	NA	False	NA	-77	True	AATAAA	-43	NA	29339273	29326076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_29326406_29335716_29335804_29338216_29338328_29339196
transcript_47193.known	chr19	-	7058	15	FSM	ENSMUSG00000046324.13	ENSMUST00000159692.8	7058	15	0	0	0	0	multi-exon	FALSE	canonical	3	290	junction_6	30.8387014999672	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCTAAATGTTTAAGCT	NA	False	NA	NA	False	NA	NA	NA	29625815	29585613	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_29590080_29590168_29590333_29593122_29593239_29593916_29594120_29595217_29595371_29600468_29600660_29601040_29601216_29604246_29604468_29606003_29606217_29608742_29608836_29609790_29609938_29614690_29614797_29617256_29617385_29623366_29623669_29625435
transcript_47195.known	chr19	-	1950	7	FSM	ENSMUSG00000046324.13	ENSMUST00000159243.2	1950	7	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_3	23.0410262117139	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAATATA	NA	False	NA	NA	False	AAAAAG	-28	NA	29625790	29605397	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_29606217_29608742_29608836_29609790_29609938_29614690_29614797_29617256_29617385_29623366_29623669_29625435
transcript_47196.nnic	chr19	+	1190	6	NNC	ENSMUSG00000024806.5	novel	906	5	NA	NA	-775	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	21.4345515465101	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAACATCTCAATGTATA	NA	False	NA	4	True	NA	NA	NA	29674448	29685826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_29675013_29675295_29675364_29677476_29677571_29682019_29682117_29684207_29684322_29685573
transcript_47199.nnic	chr19	+	899	4	NNC	ENSMUSG00000024806.5	novel	906	5	NA	NA	5632	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	19.7709101684492	42	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAACATCTCAATGTATA	NA	False	NA	4	True	NA	NA	NA	29680965	29685826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_29681401_29682019_29682117_29684207_29684322_29685573
transcript_47200.nnic	chr19	+	818	4	NNC	ENSMUSG00000024806.5	novel	906	5	NA	NA	5864	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	20.2374789822141	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAACATCTCAATGTATA	NA	False	NA	4	True	NA	NA	NA	29681197	29685826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_29681401_29681868_29682117_29684207_29684322_29685573
transcript_47202.known	chr19	-	7524	8	FSM	ENSMUSG00000046138.16	ENSMUST00000175726.8	7524	8	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	4.32364170012044	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCATGATTTCATTACTT	4402	False	NA	0	True	AATAAA	-23	NA	29782907	29691801	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_29697007_29697985_29698174_29700789_29700906_29712515_29712606_29720932_29721013_29730999_29732418_29763648_29763850_29782681
transcript_47203.known	chr19	+	3536	16	FSM	ENSMUSG00000024817.14	ENSMUST00000025739.14	3536	16	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_4	27.709124048868	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGACGCATCCAGCTTT	4085	False	NA	25	True	AATAAA	-15	NA	30007912	30071122	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_30008332_30016463_30016698_30033634_30033895_30048642_30048862_30051293_30051404_30052483_30052671_30055413_30055538_30055939_30056048_30057238_30057344_30060133_30060241_30063645_30063809_30064575_30064717_30065878_30065976_30066585_30066744_30069440_30069540_30070117
transcript_47205.known	chr19	+	1392	3	FSM	ENSMUSG00000024817.14	ENSMUST00000123773.2	1392	3	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_1	15.5	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGACGCATCCAGCTTT	6073	False	NA	25	True	AATAAA	-15	NA	30066455	30071122	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_30066744_30069440_30069540_30070117
transcript_47206.known	chr19	-	3767	25	FSM	ENSMUSG00000024827.11	ENSMUST00000025778.9	3767	25	0	0	0	0	multi-exon	FALSE	canonical	1	455	junction_4	183.478351735445	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGAATTTCCCATTTGATT	NA	False	NA	-7	True	AATAAA	-16	NA	30152829	30075846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_30076511_30077236_30077318_30078142_30078316_30080378_30080475_30088072_30088185_30091121_30091264_30092587_30092701_30093798_30093949_30095942_30096069_30102121_30102198_30109071_30109215_30110879_30110922_30111094_30111180_30111589_30111688_30113903_30113985_30114492_30114633_30116674_30116781_30120759_30120857_30122546_30122744_30123017_30123166_30124568_30124647_30128821_30128987_30135913_30136050_30151823_30151903_30152390
transcript_47208.known	chr19	+	378	1	FSM	ENSMUSG00000058607.5	ENSMUST00000080982.5	378	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGATCATGTCAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	30138019	30138397	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_30138000_30138400
transcript_47209.nnic	chr19	+	758	3	NNC	ENSMUSG00000024863.7	novel	1089	6	NA	NA	4968	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0.5	54	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCTTGTGCTCTGTGGGG	NA	False	NA	NA	False	AATAAA	-22	NA	30215309	30217087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_30215462_30215786_30215856_30216550
transcript_47210.nnic	chr19	+	816	3	NNC	ENSMUSG00000024863.7	novel	1089	6	NA	NA	4993	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0.5	46	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCTTGTGCTCTGTGGGG	NA	False	NA	NA	False	AATAAA	-22	NA	30215334	30217087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_30215545_30215786_30215856_30216550
transcript_47211.known	chr19	-	2427	4	FSM	ENSMUSG00000024868.9	ENSMUST00000025803.9	2427	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCTCTGCATGTTTTCTC	NA	False	NA	NA	False	ATTAAA	-22	NA	30527065	30523262	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_30524839_30524962_30525113_30526177_30526347_30526533
transcript_47213.nnic	chr19	-	3430	7	NNC	ENSMUSG00000040451.19	novel	4036	10	NA	NA	-3510	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_6	60.6538447988987	69	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGTGGCTATTATATTGT	4066	False	NA	-4	True	AATAAA	-15	NA	32219736	32100129	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_32101925_32102625_32102793_32106940_32107095_32120145_32120264_32136923_32137764_32200908_32200991_32219462
transcript_47222.known	chr19	-	3262	6	FSM	ENSMUSG00000040451.19	ENSMUST00000151289.9	3262	6	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_5	43.4069118920017	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGGCTATTATATTGTGT	8019	False	NA	-2	True	AATAAA	-17	NA	32188413	32100127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_32101925_32102625_32102793_32106940_32107095_32120145_32120264_32136923_32137764_32188227
transcript_47234.known	chr19	-	2566	6	FSM	ENSMUSG00000040451.19	ENSMUST00000124012.8	2566	6	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_5	27.7373394542447	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAAAAGGAAAAAAAA	7129	False	NA	NA	False	AATAGA	-33	NA	32367114	32135655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_32137764_32200908_32200991_32225393_32225437_32266940_32267032_32329344_32329424_32366951
transcript_47235.known	chr19	+	1647	2	FSM	ENSMUSG00000097787.3	ENSMUST00000181612.3	1647	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTAACACTACTTCTTACC	NA	False	NA	NA	False	AAGAAA	-9	NA	32366615	32368590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_32366777_32367104
transcript_47240.known	chr19	-	714	1	FSM	ENSMUSG00000062456.5	ENSMUST00000078034.5	714	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	261783	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATGTTAGTAAAAATGTG	NA	False	NA	NA	False	AATAAA	-35	NA	32443978	32443264	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_32443300_32444000
transcript_47241.nnic	chr19	-	623	2	Genic_Genomic	ENSMUSG00000062456.5	novel	714	1	NA	NA	2	-8	multi-exon	FALSE	canonical	2	223	junction_1	0	3334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAGAAATGTTAGTA	NA	False	NA	NA	False	AATAAA	-27	NA	32443976	32443272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr19_-_32443480_32443560
transcript_47243.nnic	chr19	-	638	2	Genic_Genomic	ENSMUSG00000062456.5	novel	714	1	NA	NA	1	-10	multi-exon	FALSE	canonical	0	0	junction_1	0	6341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAAATGTTAG	NA	False	NA	NA	False	AATAAA	-25	NA	32443977	32443274	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr19_-_32443761_32443825
transcript_47244.known	chr19	+	2613	5	FSM	ENSMUSG00000024896.10	ENSMUST00000025827.10	2613	5	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_4	28.9687331445474	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTCTGCACTCATTGAAAT	NA	False	NA	23	True	AATAAA	-30	NA	32463168	32492764	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_32463960_32468737_32468936_32471270_32471369_32475783_32475918_32491372
transcript_47245.known	chr19	+	896	2	FSM	ENSMUSG00000024896.10	ENSMUST00000236287.2	896	2	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAGCCAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32463322	32468996	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_32463960_32468737
transcript_47247.known	chr19	-	3771	10	FSM	ENSMUSG00000013662.7	ENSMUST00000235412.2	3771	10	0	0	0	0	multi-exon	FALSE	canonical	3	346	junction_2	45.0335951413833	359	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAGCCTCTCTTAAAG	NA	False	NA	NA	False	AATAAA	-21	NA	32689731	32649037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_32651765_32654116_32654251_32661401_32661453_32664632_32664723_32673191_32673299_32675839_32676041_32678919_32679041_32679939_32680039_32684234_32684410_32689665
transcript_47249.known	chr19	-	1597	7	FSM	ENSMUSG00000071573.15	ENSMUST00000096114.13	1597	7	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_4	3.8151743807532	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTCGTTTTATAGCCTC	NA	False	NA	NA	False	AATAAA	-15	NA	33369665	33115146	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_33115675_33145721_33145898_33179874_33180049_33359766_33359926_33367316_33367460_33368479_33368586_33369354
transcript_47252.known	chr19	-	1378	5	FSM	ENSMUSG00000071573.15	ENSMUST00000163093.2	1378	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	8.20060973342836	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTCGTTTTATAGCCTC	NA	False	NA	NA	False	AATAAA	-15	NA	33369695	33115146	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_33115675_33145721_33145898_33179874_33180049_33359766_33359926_33369354
transcript_47253.nic	chr19	-	970	4	ISM	ENSMUSG00000071573.15	ENSMUST00000096114.13	1597	7	-44	244413	-14	-244413	5prime_fragment	FALSE	canonical	3	11	junction_1	3.85861230093008	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCAGTGTTGTTTCTGAT	NA	False	NA	NA	False	ATTAAA	-28	NA	33369709	33359559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_-_33359926_33367316_33367460_33368479_33368586_33369354
transcript_47256.known	chr19	-	2839	11	FSM	ENSMUSG00000024766.16	ENSMUST00000112508.9	2839	11	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_5	12.3109707172099	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTCTGTTTCTTAAAAGT	NA	False	NA	-1	True	NA	NA	NA	33567708	33532559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_33533880_33534506_33534579_33535664_33535737_33536911_33537056_33556761_33556899_33557864_33557975_33559452_33559652_33560446_33560565_33562269_33562376_33565600_33565744_33567290
transcript_47264.known	chr19	+	1988	11	FSM	ENSMUSG00000024776.19	ENSMUST00000239240.2	1988	11	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	14.1918990977247	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCGGTTGTCACATTTTA	NA	False	NA	NA	False	AATAAA	-21	NA	34169628	34217733	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_34169996_34197586_34197667_34203941_34204160_34207492_34207569_34208830_34208927_34211360_34211719_34212609_34212735_34213675_34213814_34216175_34216289_34216902_34217003_34217416
transcript_47265.known	chr19	+	2024	11	FSM	ENSMUSG00000024776.19	ENSMUST00000054956.15	2024	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	15.5630973780928	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCGGTTGTCACATTTTA	NA	False	NA	NA	False	AATAAA	-21	NA	34169628	34217733	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_34170032_34197586_34197667_34203941_34204160_34207492_34207569_34208830_34208927_34211360_34211719_34212609_34212735_34213675_34213814_34216175_34216289_34216902_34217003_34217416
transcript_47270.known	chr19	+	1481	9	FSM	ENSMUSG00000024778.14	ENSMUST00000025691.13	1481	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	3.55096817783545	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTCTGTTGTCTTGCTTG	NA	False	NA	NA	False	ATTAAA	-22	NA	34268065	34305172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_34268145_34284524_34284679_34292578_34292717_34293968_34294078_34295989_34296052_34296182_34296237_34296709_34296790_34297960_34297986_34304392
transcript_47271.known	chr19	-	2965	10	FSM	ENSMUSG00000024781.17	ENSMUST00000178114.2	2965	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	13.9283882771841	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATCGGTGTGGTGTTTGC	5915	False	NA	-2	True	AATAAA	-20	NA	34504874	34469717	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_34471614_34472459_34472532_34477496_34477569_34478902_34479050_34484408_34484546_34486388_34486499_34488222_34488422_34500821_34500940_34502137_34502243_34504765
transcript_47274.known	chr19	-	2760	7	FSM	ENSMUSG00000033610.17	ENSMUST00000112460.3	2760	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_6	45.38232646698	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTTAGTGTACATGTTA	815	False	NA	-12	True	AATAAA	-18	NA	34855317	34788293	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_34789788_34791091_34791218_34798499_34798624_34799112_34799290_34804519_34804774_34818156_34818510_34855085
transcript_47279.known	chr19	+	5564	32	FSM	ENSMUSG00000024795.12	ENSMUST00000087341.7	5564	32	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_15	68.2854387453211	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCGGTGTACTTTATAAGG	NA	False	NA	3	True	AATAAA	-14	NA	34899760	34953135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_34899834_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187_34917328_34917492_34917632_34918612_34918842_34919907_34919943_34924983_34925126_34927140_34928375_34928890_34929030_34930270_34930391_34932111_34932173_34933350_34933477_34934816_34934945_34936815_34936972_34943446_34943624_34945515_34945627_34947319_34947518_34949796_34949899_34950258_34950410_34951827_34951971_34952892
transcript_47280.known	chr19	+	5423	32	FSM	ENSMUSG00000024795.12	ENSMUST00000223907.2	5423	32	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_1	62.1311593110583	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTATAAGGCTCTTAAACT	NA	False	NA	13	True	AATAAA	-24	NA	34899791	34953145	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_34899834_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187_34917328_34917492_34917632_34918732_34918842_34919907_34919943_34924983_34925126_34927140_34928375_34928890_34929030_34930270_34930391_34932111_34932173_34933350_34933477_34934816_34934945_34936815_34936972_34943446_34943624_34945515_34945627_34947319_34947518_34949796_34949899_34950258_34950410_34951827_34951971_34952892
transcript_47290.nic	chr19	+	1870	14	ISM	ENSMUSG00000024795.12	ENSMUST00000087341.7	5564	32	-26	35894	-26	2899	5prime_fragment	FALSE	canonical	3	103	junction_1	63.9200684286946	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAATTAACATTGGAACT	NA	False	NA	NA	False	AATAAA	-22	NA	34899734	34917241	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_+_34899834_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187
transcript_47297.known	chr19	+	573	4	FSM	ENSMUSG00000024795.12	ENSMUST00000225151.2	573	4	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_1	99.267315869827	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCGGTGTACTTTATAAG	9226	False	NA	2	True	AATAAA	-13	NA	34947480	34953134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_34947518_34950258_34950410_34951827_34951971_34952892
transcript_47308.nic	chr19	+	1166	11	NIC	ENSMUSG00000024800.9	novel	1145	11	NA	NA	-55	0	combination_of_known_junctions	FALSE	canonical	3	67	junction_7	297.230701644362	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGATTTTTAAATTTTACTA	NA	False	NA	NA	False	AATAAA	-26	NA	36061060	36082177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_+_36061219_36062465_36062522_36064358_36064416_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077640_36078208_36078239_36078633_36078672_36079220_36079301_36081735
transcript_47309.known	chr19	+	1145	11	FSM	ENSMUSG00000024800.9	ENSMUST00000025714.9	1145	11	0	0	0	0	multi-exon	FALSE	canonical	3	930	junction_4	72.6416547168359	1626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGATTTTTAAATTTTACTA	NA	False	NA	NA	False	AATAAA	-26	NA	36061130	36082177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_36061219_36062465_36062522_36064358_36064416_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077689_36078208_36078239_36078633_36078672_36079220_36079301_36081735
transcript_47345.nnic	chr19	-	794	3	Antisense	novelGene_ENSMUSG00000118032.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCAGCAACTAGGCATACAA	NA	False	NA	NA	False	NA	NA	NA	36233804	36212821	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr19_-_36212985_36213375_36213511_36233308
transcript_47347.nnic	chr19	-	791	3	Antisense	novelGene_ENSMUSG00000118032.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGCATCAGCAACTAGGCA	NA	False	NA	NA	False	NA	NA	NA	36233795	36212826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr19_-_36212985_36219029_36219176_36233308
transcript_47350.known	chr19	+	1626	10	FSM	ENSMUSG00000024805.17	ENSMUST00000225411.2	1626	10	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_8	28.4843470118477	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAACCCAAAATGCC	NA	False	NA	-6	True	AATAAA	-6	NA	36387147	36433592	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_36387310_36389355_36389637_36411969_36412067_36414554_36414611_36414702_36414763_36417398_36417548_36420243_36420343_36422387_36422478_36427963_36428024_36433020
transcript_47352.known	chr19	+	6443	9	FSM	ENSMUSG00000024805.17	ENSMUST00000225920.2	6443	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	36.9382931386928	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGGCCTGTTAATGTTT	NA	False	NA	NA	False	ATTAAA	-19	NA	36325708	36438370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_36325970_36389355_36389637_36411969_36412067_36414554_36414611_36414702_36414763_36417398_36417548_36420243_36420343_36422387_36422478_36433020
transcript_47353.nnic	chr19	+	1466	9	NNC	ENSMUSG00000024805.17	novel	430	5	NA	NA	-116	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	39.2037944592102	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGCCAGCTTATTCTTG	NA	False	NA	6	True	AATAAA	-18	NA	36387031	36433604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_36387082_36389355_36389637_36411969_36412067_36414554_36414611_36414702_36414763_36417398_36417548_36420243_36420343_36422387_36422478_36433020
transcript_47354.known	chr19	+	1566	9	FSM	ENSMUSG00000024805.17	ENSMUST00000062389.6	1566	9	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_8	19.6580136331217	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAACCCAAAATGCC	NA	False	NA	-6	True	AATAAA	-6	NA	36387147	36433592	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_36387310_36389355_36389637_36411969_36412067_36414554_36414611_36414702_36414763_36417398_36417548_36420243_36420343_36422387_36422478_36433020
transcript_47357.known	chr19	+	3842	21	FSM	ENSMUSG00000041180.14	ENSMUST00000169036.9	3842	21	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_10	5.91840350094516	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTGCACCCAACCAGCA	NA	False	NA	NA	False	NA	NA	NA	36532067	36597642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_36532316_36546772_36546903_36561335_36561475_36562295_36562399_36562843_36562934_36564765_36564831_36572608_36572655_36574476_36574587_36576286_36576436_36576995_36577120_36578828_36578929_36581649_36581758_36582567_36582701_36583785_36583875_36586664_36586824_36588763_36588839_36589543_36589632_36589716_36589824_36591747_36591864_36592899_36593044_36596123
transcript_47358.known	chr19	-	2725	2	FSM	ENSMUSG00000067279.4	ENSMUST00000087321.4	2725	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGAGAATGTTTTCTTTCC	NA	False	NA	1	True	AATAAA	-17	NA	36714053	36709130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_36711755_36713952
transcript_47360.known	chr19	+	1809	6	FSM	ENSMUSG00000023307.15	ENSMUST00000024078.15	1809	6	0	0	0	0	multi-exon	FALSE	canonical	3	653	junction_3	49.1747902893342	1520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGTGTACTTTTGACTCG	NA	False	NA	25	True	ATTAAA	-33	NA	37184941	37199550	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_37185304_37188069_37188273_37194581_37194713_37197701_37197886_37198037_37198205_37198788
transcript_47366.known	chr19	+	1293	5	FSM	ENSMUSG00000023307.15	ENSMUST00000112391.8	1293	5	0	0	0	0	multi-exon	FALSE	canonical	3	653	junction_3	54.8475158963467	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATACTGTTTCCTGTCATC	NA	False	NA	12	True	AATAAA	-20	NA	37184966	37198475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_37185304_37188069_37188273_37194581_37194713_37197701_37197886_37198037
transcript_47371.known	chr19	+	1033	4	FSM	ENSMUSG00000023307.15	ENSMUST00000128530.2	1033	4	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	327.21484617229	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAACAAACCCAGAAATGTA	NA	False	NA	-7	True	NA	NA	NA	37194588	37199376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_37194713_37197701_37197886_37198067_37198205_37198788
transcript_47374.known	chr19	-	5059	25	FSM	ENSMUSG00000056999.17	ENSMUST00000131070.3	5059	25	0	0	0	0	multi-exon	TRUE	canonical	3	707	junction_13	63.1947496940125	256	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCGCTTTGTGTTGTGTG	NA	False	NA	-2	True	AATAAA	-18	NA	37340010	37246141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_37248237_37248903_37248972_37249553_37249627_37253913_37253976_37255139_37255413_37257983_37258152_37261519_37261632_37262604_37262697_37264511_37264633_37265496_37265608_37268068_37268214_37273281_37273365_37275450_37275574_37281292_37281396_37287186_37287291_37289481_37289563_37290908_37291001_37291378_37291472_37292232_37292396_37292803_37292917_37295375_37295499_37302546_37302717_37306379_37306588_37307826_37308012_37339912
transcript_47388.known	chr19	-	642	1	FSM	ENSMUSG00000080885.2	ENSMUST00000121321.2	642	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2506	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGGCTTCAATAGTTCTC	NA	False	NA	NA	False	AATATA	-45	NA	37273195	37272553	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_37272600_37273200
transcript_47390.known	chr19	+	4819	22	FSM	ENSMUSG00000012443.5	ENSMUST00000012587.4	4819	22	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_17	34.0452546631592	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCGTGCTGCCTGTACAT	NA	False	NA	8	True	ATTAAA	-15	NA	37364850	37410307	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_37365116_37372687_37372821_37372989_37373088_37373179_37373259_37375464_37375651_37375758_37375884_37378759_37378851_37379096_37379340_37382132_37382229_37386566_37386656_37390652_37390741_37391908_37392098_37392561_37392770_37395441_37395615_37397923_37398050_37398173_37398333_37398974_37399082_37399778_37400059_37401568_37401792_37404937_37405081_37406348_37406466_37408706
transcript_47393.nic	chr19	+	2266	15	ISM	ENSMUSG00000012443.5	ENSMUST00000012587.4	4819	22	-77	12258	-77	3830	5prime_fragment	TRUE	canonical	3	286	junction_7	24.9089157056796	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACACATGTTTTCTTCTTT	NA	False	NA	NA	False	NA	NA	NA	37364773	37398049	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_+_37365116_37372687_37372821_37372989_37373088_37373179_37373259_37375464_37375651_37375758_37375884_37378759_37378851_37379096_37379340_37382132_37382229_37386566_37386656_37390652_37390741_37391908_37392098_37392561_37392770_37395441_37395615_37397923
transcript_47394.nnic	chr19	+	1860	7	NNC	ENSMUSG00000012443.5	novel	4819	22	NA	NA	-77	-16260	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_6	128.029618968945	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGATCATTTTTTTAT	NA	False	NA	NA	False	AATAAA	-28	NA	37364773	37377959	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_37365116_37372687_37372821_37372989_37373088_37373179_37373259_37375464_37375651_37375758_37375884_37377062
transcript_47395.known	chr19	-	406	1	FSM	ENSMUSG00000118211.2	ENSMUST00000229520.3	406	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGTATATTTTTGTTTTCA	NA	False	NA	NA	False	AATACA	-42	NA	37402295	37401889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_37401900_37402300
transcript_47396.known	chr19	-	1748	1	FSM	ENSMUSG00000102353.2	ENSMUST00000192635.2	1748	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTATTTCTAAGTCCAT	NA	False	NA	NA	False	AGTAAA	-2	NA	37423104	37421356	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_37421400_37423100
transcript_47399.known	chr19	+	1802	4	FSM	ENSMUSG00000024986.13	ENSMUST00000025944.9	1802	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	4.18993502999218	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTGTGTGCACGCGTGT	NA	False	NA	79	True	NA	NA	NA	37423257	37429179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_37423682_37425636_37425816_37426014_37426066_37428031
transcript_47402.known	chr19	+	2692	22	FSM	ENSMUSG00000053799.9	ENSMUST00000238817.2	2692	22	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_2	21.0093381678108	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCTGCTTGCATTTTTT	1910	False	NA	NA	False	AATAAA	-38	NA	37538906	37671703	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_37539014_37558830_37559003_37560046_37560089_37560305_37560397_37562159_37562206_37565383_37565589_37566867_37567024_37570640_37570710_37574258_37574343_37576085_37576133_37576264_37576386_37578298_37578371_37579315_37579414_37582109_37582216_37585542_37585653_37587013_37587126_37588006_37588142_37597373_37597554_37628069_37628212_37641830_37641905_37670107_37670221_37671293
transcript_47410.nic	chr19	-	1127	4	ISM	ENSMUSG00000048612.17	ENSMUST00000226084.2	3926	10	-194	18290	-16	-18290	5prime_fragment	FALSE	canonical	3	137	junction_2	6.94422221866655	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCCAAACTATGAGTTAAAAA	8662	False	NA	NA	False	NA	NA	NA	38032041	37986151	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_-_37986773_38011000_38011093_38012789_38012846_38031683
transcript_47411.known	chr19	-	3066	27	FSM	ENSMUSG00000048612.17	ENSMUST00000223650.2	3066	27	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	29.2210763281428	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTTTCTCTGGTTCACT	8897	False	NA	NA	False	NA	NA	NA	38031806	37936173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_37936452_37937998_37938163_37939874_37940007_37941390_37941547_37942814_37943008_37944890_37944998_37948161_37948287_37949367_37949546_37955463_37955581_37956775_37956901_37958354_37958394_37960622_37960706_37963031_37963076_37963305_37963375_37966097_37966202_37968796_37968924_37969670_37969787_37970325_37970357_37971407_37971459_37971536_37971600_37974408_37974538_37975096_37975264_37983869_37983958_37986663_37986773_38011000_38011093_38012789_38012846_38031683
transcript_47414.nnic	chr19	+	2877	10	NNC	ENSMUSG00000024989.16	novel	2442	10	NA	NA	-437	0	at_least_one_novel_splicesite	FALSE	canonical	3	86	junction_2	90.951078967938	238	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGTCTAGTATGTGTGT	NA	False	NA	NA	False	AATAAA	-18	NA	38043021	38062871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_38043530_38045857_38045901_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
transcript_47417.known	chr19	+	2442	10	FSM	ENSMUSG00000024989.16	ENSMUST00000236044.2	2442	10	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	104.602716958317	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGTCTAGTATGTGTGT	NA	False	NA	NA	False	AATAAA	-18	NA	38043484	38062871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_38043530_38045857_38045929_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
transcript_47419.nic	chr19	+	2569	10	NIC	ENSMUSG00000024989.16	novel	2442	10	NA	NA	-39	0	combination_of_known_junctions	FALSE	canonical	3	113	junction_2	84.0640555296898	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGTCTAGTATGTGTGT	NA	False	NA	NA	False	AATAAA	-18	NA	38043419	38062871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_+_38043530_38045857_38045991_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
transcript_4742.known	chr1	+	430	8	FSM	ENSMUSG00000053332.14	ENSMUST00000161005.8	430	8	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	2436.42213426297	1650	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862176	160866109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_160862290_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160865794_160865843_160866026
transcript_47421.nic	chr19	+	2612	10	NIC	ENSMUSG00000024989.16	novel	2442	10	NA	NA	-58	0	combination_of_known_junctions	FALSE	canonical	3	96	junction_2	88.367917758024	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGTCTAGTATGTGTGT	NA	False	NA	NA	False	AATAAA	-18	NA	38043400	38062871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_+_38043530_38045857_38046015_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
transcript_47427.known	chr19	+	2683	10	FSM	ENSMUSG00000024989.16	ENSMUST00000237408.2	2683	10	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_9	135.940982110929	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTCTAGTATGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	38043536	38062869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_38043766_38045857_38045991_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061748
transcript_47428.known	chr19	+	2757	10	FSM	ENSMUSG00000024989.16	ENSMUST00000169673.3	2757	10	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	107.147988119351	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTCTAGTATGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	38043489	38062869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_38043766_38045857_38046015_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
transcript_47434.known	chr19	+	1440	9	FSM	ENSMUSG00000024989.16	ENSMUST00000116506.8	1440	9	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_8	149.494512859168	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAACCATTCTTGCCTTTG	NA	False	NA	NA	False	NA	NA	NA	38043487	38061946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_38043530_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061748
transcript_47443.known	chr19	+	859	5	FSM	ENSMUSG00000024989.16	ENSMUST00000235601.2	859	5	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_2	95.4211061558186	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-36	NA	38043458	38051234	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_38043530_38045857_38045991_38046236_38046432_38048528_38048805_38051050
transcript_47450.known	chr19	+	1401	3	FSM	ENSMUSG00000054200.8	ENSMUST00000067098.8	1401	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAATCTCTATCTTGTGA	NA	False	NA	NA	False	NA	NA	NA	38085518	38102711	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_38086142_38095829_38095959_38102062
transcript_47451.known	chr19	-	937	6	FSM	ENSMUSG00000024990.14	ENSMUST00000112335.4	937	6	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_5	4.31740662898458	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTTCCTATGAGTTGAAGA	5209	False	NA	-5	True	ATTAAA	-13	NA	38113276	38105077	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_38105358_38106719_38106933_38112476_38112584_38112743_38112881_38112966_38113096_38113205
transcript_47452.known	chr19	-	1161	6	FSM	ENSMUSG00000024990.14	ENSMUST00000025951.14	1161	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	6.15142259969188	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCCTATGAGTTGAAGAC	4789	False	NA	-4	True	ATTAAA	-14	NA	38113696	38105076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_38105358_38106719_38106933_38112476_38112584_38112743_38112881_38112966_38113096_38113402
transcript_47461.known	chr19	-	1010	9	FSM	ENSMUSG00000054237.7	ENSMUST00000238007.2	1010	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_8	124.747682844212	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGTCTTTAGCATTATGG	NA	False	NA	NA	False	AATAAA	-10	NA	38212604	38192990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_38193258_38195710_38195757_38201808_38201894_38202821_38202906_38204278_38204356_38207905_38207952_38208079_38208176_38210284_38210399_38212409
transcript_47462.known	chr19	-	1402	14	FSM	ENSMUSG00000054237.7	ENSMUST00000067167.6	1402	14	0	0	0	0	multi-exon	TRUE	canonical	3	295	junction_2	36.3583414649629	937	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTCAGAGTCTTTCCT	NA	False	NA	-7	True	AATAAA	-20	NA	38212586	38176928	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_38177249_38178276_38178356_38184144_38184184_38188007_38188127_38189994_38190038_38193143_38193258_38195710_38195757_38201808_38201894_38202821_38202906_38204278_38204356_38207905_38207952_38208079_38208176_38210284_38210362_38212409
transcript_47466.known	chr19	+	3474	3	FSM	ENSMUSG00000044026.4	ENSMUST00000054098.4	3474	3	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_1	3	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGTGTCTCACGACTCGT	NA	False	NA	35	True	AATAAA	-36	NA	38384427	38394058	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_38384750_38388881_38389063_38391087
transcript_47470.known	chr19	-	3977	21	FSM	ENSMUSG00000024999.8	ENSMUST00000025963.8	3977	21	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_1	18.6711006638602	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTAGTCTTACGAGGTT	2288	False	NA	NA	False	AATAAA	-17	NA	38807681	38776571	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_38778142_38778731_38778817_38781144_38781243_38782548_38782678_38783415_38783598_38783929_38784002_38784081_38784146_38784240_38784314_38787341_38787443_38787753_38787835_38792842_38792975_38795530_38795660_38795969_38796146_38798451_38798546_38798741_38798904_38800787_38800919_38802524_38802579_38803129_38803288_38804026_38804160_38806381_38806590_38807536
transcript_47474.known	chr19	+	5868	22	FSM	ENSMUSG00000025001.12	ENSMUST00000025965.12	5868	22	0	0	0	0	multi-exon	TRUE	canonical	3	1554	junction_5	143.18806117019	979	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGATGACTTCATCCCA	NA	False	NA	NA	False	AAGAAA	-5	NA	38919358	38959495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_38919520_38919834_38919957_38923857_38923981_38926849_38926907_38928914_38928952_38929040_38929106_38930897_38930937_38932157_38932386_38933834_38934018_38935168_38935313_38938631_38938829_38940278_38940376_38941986_38942149_38943134_38943275_38943357_38943497_38945478_38945563_38945641_38945762_38947487_38947605_38948112_38948273_38953040_38953138_38953850_38953928_38956176
transcript_47507.known	chr19	+	1995	9	FSM	ENSMUSG00000025002.6	ENSMUST00000025966.5	1995	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAATTCTTTACTTTTTC	NA	False	NA	NA	False	NA	NA	NA	38995462	39031137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_38995658_38999463_38999627_39000133_39000284_39007086_39007248_39019705_39019883_39022682_39022825_39023888_39024077_39026543_39026686_39030460
transcript_47508.known	chr19	-	1786	9	FSM	ENSMUSG00000067225.3	ENSMUST00000048959.5	1786	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCAGACTTTTCTTTCAG	NA	False	NA	NA	False	AATAAA	-18	NA	40062271	40026383	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_40026863_40028635_40028778_40034519_40034708_40035947_40036090_40058611_40058789_40059889_40060051_40060498_40060649_40060810_40060974_40062087
transcript_47513.known	chr19	-	2571	7	FSM	ENSMUSG00000055044.13	ENSMUST00000068439.13	2571	7	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_3	18.3938395484285	1075	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCTGTTCCTGGAAGTG	NA	False	NA	NA	False	NA	NA	NA	40260060	40209616	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_40211216_40211494_40211613_40218950_40219103_40231849_40232044_40238062_40238148_40240353_40240506_40259789
transcript_47516.nic	chr19	-	2598	23	NIC	ENSMUSG00000025006.19	novel	2582	24	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_3	16.9725105892581	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCCCAGTCTTTACCCAC	9850	False	NA	NA	False	NA	NA	NA	40502233	40283196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_40283561_40284975_40285089_40287906_40287966_40300112_40300308_40302807_40302934_40303060_40303176_40306465_40306513_40313190_40313277_40315893_40316067_40325429_40325480_40338342_40338458_40340720_40340851_40340961_40341010_40351645_40351710_40353437_40353611_40358133_40358164_40361919_40362062_40370964_40371078_40381831_40381961_40386985_40387055_40390701_40390755_40439757_40439843_40502114
transcript_47524.known	chr19	-	3427	19	FSM	ENSMUSG00000025007.14	ENSMUST00000176939.8	3427	19	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_12	241.939820085925	455	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCACAGTTCGTTTTCTC	NA	False	NA	-11	True	AATAAA	-18	NA	40576813	40538700	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562660_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
transcript_47538.known	chr19	-	2743	14	FSM	ENSMUSG00000025008.16	ENSMUST00000025981.15	2743	14	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_10	4.39337855732112	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTGACTTTTTTTCTTG	NA	False	NA	-1	True	CATAAA	-17	NA	40600677	40584889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_40585987_40591248_40591387_40593749_40593904_40594146_40594242_40594669_40594778_40595721_40595848_40596069_40596151_40596663_40596700_40597135_40597252_40597345_40597455_40597645_40597777_40599737_40599857_40600094_40600219_40600368
transcript_4754.known	chr1	-	2473	5	FSM	ENSMUSG00000043467.20	ENSMUST00000159250.9	2473	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	2.06155281280883	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTGGAGAAGTAAAATGAGC	NA	False	NA	NA	False	NA	NA	NA	160862418	160846828	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_160847977_160857211_160857312_160859374_160860332_160861657_160861855_160862347
transcript_47540.known	chr19	-	1686	12	FSM	ENSMUSG00000025008.16	ENSMUST00000135795.8	1686	12	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_8	4.71501908359634	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACAGTTCTCAACCCATG	NA	False	NA	NA	False	AATAAA	-15	NA	40600647	40593541	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_40593904_40594146_40594242_40594669_40594778_40595721_40595848_40596069_40596151_40596663_40596700_40597135_40597252_40597345_40597455_40597645_40597777_40599737_40599857_40600094_40600219_40600368
transcript_47541.known	chr19	-	1271	9	FSM	ENSMUSG00000025008.16	ENSMUST00000132452.2	1271	9	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_5	4.35889894354067	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAGAAAAGCAATAATCTGT	NA	False	NA	NA	False	AATAAA	-18	NA	40600644	40595568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_40595848_40596069_40596151_40596663_40596700_40597135_40597252_40597345_40597455_40597645_40597777_40599737_40599857_40600094_40600219_40600368
transcript_47542.known	chr19	+	380	2	FSM	ENSMUSG00000048120.17	ENSMUST00000160286.2	380	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTTGGATGGTGGTCTT	NA	False	NA	NA	False	NA	NA	NA	40600832	40604162	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_40600968_40603917
transcript_47547.known	chr19	+	6840	5	FSM	ENSMUSG00000049164.8	ENSMUST00000050092.7	6840	5	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	19.3196790863617	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTCTTCTTTTTTTTAA	NA	False	NA	45	True	ATTAAA	-22	NA	40883148	40906391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_40883235_40885527_40885610_40896502_40896648_40899476_40899554_40899941
transcript_47554.nnic	chr19	+	1559	2	NNC	ENSMUSG00000049164.8	novel	1345	4	NA	NA	-596	-19046	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	0	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACCAAAAAAAAACCAAA	NA	False	NA	NA	False	NA	NA	NA	40882552	40886849	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_40882790_40885527
transcript_47555.nic	chr19	+	1461	2	ISM	ENSMUSG00000049164.8	ENSMUST00000050092.7	6840	5	-50	19539	-50	-19043	5prime_fragment	FALSE	canonical	3	75	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACCAAAAAAAAACCAAAGTT	NA	False	NA	NA	False	NA	NA	NA	40883098	40886852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_+_40883235_40885527
transcript_47557.known	chr19	-	2097	17	FSM	ENSMUSG00000061132.14	ENSMUST00000054769.7	2097	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	9.12221704137761	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTGTGATGCATTTTCAG	NA	False	NA	NA	False	AATAAA	-16	NA	40982978	40917370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_40917737_40922870_40923027_40924716_40924801_40926094_40926172_40927810_40927843_40928615_40928701_40931745_40931789_40932570_40932599_40933930_40934001_40939397_40939470_40940794_40940877_40948142_40948307_40950788_40950946_40952686_40952728_40956942_40956993_40961029_40961096_40982454
transcript_47559.nnic	chr19	-	783	5	NNC	ENSMUSG00000061132.14	novel	2097	17	NA	NA	56097	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	16.0837651064668	75	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTGTGATGCATTTTCAG	NA	False	NA	NA	False	AATAAA	-16	NA	40926494	40917370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_40917737_40922870_40923027_40924716_40924801_40926094_40926172_40926394
transcript_47561.nic	chr19	-	800	4	ISM	ENSMUSG00000061132.14	ENSMUST00000117695.8	1701	17	56303	0	56303	0	3prime_fragment	FALSE	canonical	1	2	junction_3	16.5126214353344	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTGTGATGCATTTTCAG	NA	False	NA	NA	False	AATAAA	-16	NA	40926288	40917370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_-_40917737_40922870_40923027_40924716_40924801_40926094
transcript_47563.nnic	chr19	-	631	3	NNC	ENSMUSG00000061132.14	novel	1701	17	NA	NA	58637	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	6.5	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTGTGATGCATTTTCAG	NA	False	NA	NA	False	AATAAA	-16	NA	40923954	40917370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_40917737_40922870_40923027_40923845
transcript_47564.nnic	chr19	-	579	3	NNC	ENSMUSG00000061132.14	novel	1701	17	NA	NA	58654	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	19.5	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTGTGATGCATTTTCAG	NA	False	NA	NA	False	AATAAA	-16	NA	40923937	40917370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_40917737_40922870_40923027_40923880
transcript_47565.nic	chr19	-	650	3	ISM	ENSMUSG00000061132.14	ENSMUST00000117695.8	1701	17	57747	0	57747	0	3prime_fragment	FALSE	canonical	3	9	junction_2	15.5	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTGTGATGCATTTTCAG	NA	False	NA	NA	False	AATAAA	-16	NA	40924844	40917370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_-_40917737_40922870_40923027_40924716
transcript_47567.known	chr19	-	3170	15	FSM	ENSMUSG00000025016.12	ENSMUST00000237871.2	3170	15	0	0	0	0	multi-exon	TRUE	canonical	3	1017	junction_13	71.1689926176006	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTTGTGACAGTAGATG	NA	False	NA	-29	True	AATAAA	-15	NA	41252419	41202230	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_41203579_41205539_41205617_41205786_41205871_41206608_41206756_41209675_41209745_41211522_41211663_41220781_41220913_41223119_41223215_41227116_41227284_41229015_41229148_41233882_41233961_41235081_41235243_41236344_41236468_41244583_41244780_41252197
transcript_47571.known	chr19	+	4833	8	FSM	ENSMUSG00000025019.18	ENSMUST00000067795.13	4833	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_7	35.0218590632322	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTAAAAAAATACAAAAGCT	NA	False	NA	NA	False	TTTAAA	-31	NA	41471075	41550700	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_41471223_41471965_41472040_41516459_41516526_41516999_41517080_41534313_41534447_41540887_41541176_41544046_41544141_41546749
transcript_47573.nic	chr19	+	643	5	ISM	ENSMUSG00000025019.18	ENSMUST00000067795.13	4833	8	-7	16118	-7	-13025	5prime_fragment	FALSE	canonical	3	83	junction_3	9.51314879522022	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATTGTCCTCTTTAATTT	NA	False	NA	NA	False	ATTAAA	-22	NA	41471068	41534582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_+_41471223_41471965_41472040_41516459_41516526_41516999_41517080_41534313
transcript_47574.nic	chr19	+	931	5	ISM	ENSMUSG00000025019.18	ENSMUST00000067795.13	4833	8	-7	15830	-7	-12737	5prime_fragment	FALSE	canonical	3	83	junction_3	9.51314879522022	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCTTGCATGTATGTAT	NA	False	NA	NA	False	TTTAAA	-24	NA	41471068	41534870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_+_41471223_41471965_41472040_41516459_41516526_41516999_41517080_41534313
transcript_47577.nic	chr19	+	569	4	ISM	ENSMUSG00000025019.18	ENSMUST00000067795.13	4833	8	-7	33426	-7	-30333	5prime_fragment	FALSE	canonical	3	83	junction_3	9.20144916122817	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCAGTGGTGGTGCTT	NA	False	NA	NA	False	ATTAAA	-16	NA	41471068	41517274	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_+_41471223_41471965_41472040_41516459_41516526_41516999
transcript_47578.known	chr19	-	5103	12	FSM	ENSMUSG00000025154.16	ENSMUST00000026150.15	5103	12	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_2	42.9826026693522	198	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGGGTTCTGACTGGTC	4527	False	NA	NA	False	ATTAAA	-17	NA	41790486	41755026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_41758636_41761488_41761568_41762504_41762616_41767548_41767648_41769596_41769789_41770769_41770836_41772764_41772852_41773210_41773438_41774996_41775207_41776744_41776826_41780185_41780452_41790410
transcript_47580.known	chr19	-	4340	34	FSM	ENSMUSG00000035049.5	ENSMUST00000038677.5	4340	34	0	0	0	0	multi-exon	TRUE	canonical	3	269	junction_16	39.9184430265499	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGATGAGTGGCTTGGC	NA	False	NA	-8	True	AATAAA	-20	NA	41884612	41851289	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_41851752_41853610_41853694_41853959_41854028_41855144_41855212_41857208_41857259_41859248_41859375_41859573_41859744_41859860_41860029_41860171_41860264_41861347_41861506_41862181_41862290_41862674_41862781_41862967_41863049_41863155_41863315_41864973_41865068_41865539_41865608_41865774_41865930_41866222_41866386_41866467_41866533_41868540_41868663_41868797_41868941_41870597_41870713_41871861_41871960_41872151_41872264_41874085_41874178_41874525_41874625_41875238_41875367_41875449_41875589_41878204_41878322_41878507_41878614_41879522_41879600_41880976_41881061_41883586_41883817_41884377
transcript_47588.known	chr19	+	617	4	FSM	ENSMUSG00000011752.8	ENSMUST00000237510.2	617	4	0	0	0	0	multi-exon	FALSE	canonical	2	120	junction_1	2583.95063592339	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTGCGCAAAGCCATGGAAG	4175	False	NA	NA	False	NA	NA	NA	41900476	41906162	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_41900561_41904084_41904319_41905081_41905263_41906044
transcript_47592.known	chr19	+	1775	4	FSM	ENSMUSG00000011752.8	ENSMUST00000011896.8	1775	4	0	0	0	0	multi-exon	FALSE	canonical	3	5418	junction_2	350.959003620398	21137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTACTGTTTGTCTTGTGT	4060	False	NA	0	True	AATAAA	-17	NA	41900361	41907099	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_41900626_41904043_41904319_41905081_41905263_41906044
transcript_47599.known	chr19	-	1018	8	FSM	ENSMUSG00000034321.15	ENSMUST00000075280.12	1018	8	0	0	0	0	multi-exon	FALSE	canonical	3	822	junction_7	62.4257926808842	1298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGACTGGAAAAAATTCTTT	NA	False	NA	-33	True	TATAAA	-22	NA	41921735	41912004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_41912528_41913149_41913235_41913627_41913679_41914970_41915005_41916463_41916553_41919794_41919870_41921487_41921604_41921690
transcript_47610.nnic	chr19	-	1055	7	NIC	ENSMUSG00000034321.15	novel	1018	8	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	40	junction_4	328.565569305935	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGACTGGAAAAAATTCTTT	NA	False	NA	-33	True	TATAAA	-22	NA	41921861	41912004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_41912528_41913149_41913235_41913627_41913679_41914970_41915005_41919794_41919870_41921487_41921604_41921690
transcript_47618.known	chr19	-	2296	6	FSM	ENSMUSG00000034321.15	ENSMUST00000112123.4	2296	6	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_3	310.084246616948	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGAGTCCGTTCTCT	NA	False	NA	NA	False	NA	NA	NA	41921862	41910730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_41912528_41913149_41913235_41913627_41913679_41919794_41919870_41921487_41921604_41921690
transcript_4762.known	chr1	+	62	1	FSM	ENSMUSG00000080463.3	ENSMUST00000116813.3	62	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATTCAGCTACTGGAAAG	NA	False	NA	NA	False	AAAACA	-14	NA	160863419	160863481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_160863400_160863500
transcript_47625.known	chr19	-	1504	2	FSM	ENSMUSG00000034321.15	ENSMUST00000237177.2	1504	2	0	0	0	0	multi-exon	FALSE	canonical	3	822	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	41921737	41920146	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_41921604_41921690
transcript_47626.known	chr19	-	6607	31	FSM	ENSMUSG00000025159.9	ENSMUST00000171561.8	6607	31	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_15	35.2197703317643	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCTTGTCCCATAACAAG	NA	False	NA	NA	False	AATAAA	-16	NA	41969596	41929524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_41933020_41933095_41933197_41933767_41933828_41933897_41934063_41934171_41934255_41935355_41935543_41936128_41936186_41936654_41936756_41937893_41938021_41938207_41938277_41938419_41938523_41939190_41939291_41940845_41941002_41942107_41942258_41942355_41942457_41942904_41942987_41943171_41943298_41943556_41943636_41943857_41944013_41944261_41944401_41944947_41945026_41945579_41945655_41946296_41946384_41951238_41951301_41951388_41951518_41951839_41951910_41952301_41952377_41952756_41952843_41954652_41954754_41958141_41958191_41969437
transcript_4763.known	chr1	+	502	12	FSM	ENSMUSG00000053332.14	ENSMUST00000162558.8	502	12	0	0	0	0	multi-exon	FALSE	canonical	3	1206	junction_7	1656.43137771865	27607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGAAGTGTGCATTTT	NA	False	NA	20	True	ATTAAA	-16	NA	160862732	160866107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864693_160864735_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
transcript_47635.nic	chr19	+	1923	12	NIC	ENSMUSG00000025157.9	novel	1821	11	NA	NA	-44	0	combination_of_known_junctions	FALSE	canonical	3	79	junction_8	134.380796050282	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGCTTCTCTGTGCCTCG	4085	False	NA	18	True	AATAAA	-24	NA	41921874	41932543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927246_41927276_41928038_41928173_41928295_41928344_41929088_41929175_41929954_41930079_41930374_41930446_41932020
transcript_4764.known	chr1	+	557	11	FSM	ENSMUSG00000053332.14	ENSMUST00000159706.8	557	11	0	0	0	0	multi-exon	TRUE	canonical	3	3085	junction_7	1053.46856146731	62959	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGAAGTGTGCATTTT	NA	False	NA	20	True	ATTAAA	-16	NA	160862636	160866107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
transcript_47645.nic	chr19	+	1963	11	NIC	ENSMUSG00000025157.9	novel	1821	11	NA	NA	-44	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_5	121.95691862293	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGCTTCTCTGTGCCTCG	4085	False	NA	18	True	AATAAA	-24	NA	41921874	41932543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927158_41927276_41928038_41928173_41929088_41929175_41929954_41930079_41930374_41930446_41932020
transcript_4765.known	chr1	+	346	8	FSM	ENSMUSG00000053332.14	ENSMUST00000159663.8	346	8	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_6	1912.24889508	4760	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862735	160866109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160865794_160865843_160866026
transcript_47650.known	chr19	+	1821	11	FSM	ENSMUSG00000025157.9	ENSMUST00000026154.9	1821	11	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_7	37.0513157661101	591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGCTTCTCTGTGCCTCG	4139	False	NA	18	True	AATAAA	-24	NA	41921928	41932543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927246_41927276_41928038_41928173_41929088_41929175_41929954_41930079_41930374_41930446_41932020
transcript_47657.nic	chr19	+	1740	11	NIC	ENSMUSG00000025157.9	novel	1821	11	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_1	121.178422171606	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGCTTCTCTGTGCCTCG	4118	False	NA	18	True	AATAAA	-24	NA	41921907	41932543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_+_41922105_41923278_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927246_41927276_41928038_41928173_41929088_41929175_41929954_41930079_41930374_41930446_41932020
transcript_4766.known	chr1	+	1066	9	FSM	ENSMUSG00000053332.14	ENSMUST00000159890.8	1066	9	0	0	0	0	multi-exon	FALSE	canonical	3	3085	junction_5	979.227469743369	1549	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862757	160866109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863815_160864118_160864150_160864389_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
transcript_4767.known	chr1	+	1614	7	FSM	ENSMUSG00000053332.14	ENSMUST00000162163.8	1614	7	0	0	0	0	multi-exon	FALSE	canonical	3	3085	junction_3	1089.57866474462	1556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862753	160866109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
transcript_47678.known	chr19	+	539	4	FSM	ENSMUSG00000025157.9	ENSMUST00000224258.2	539	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	182.680656398597	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCCCCTCATCCTCCGA	4129	False	NA	NA	False	NA	NA	NA	41921918	41926522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_41922105_41923278_41923323_41926041_41926290_41926461
transcript_47679.known	chr19	+	1561	10	FSM	ENSMUSG00000025157.9	ENSMUST00000225968.2	1561	10	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	175.05477097042	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGATATGTAGCTTCTC	8317	False	NA	9	True	AATAAA	-15	NA	41926106	41932534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_41926290_41926461_41926657_41926802_41926892_41927158_41927276_41928038_41928173_41928295_41928344_41929088_41929175_41929954_41930079_41930374_41930446_41932020
transcript_4768.known	chr1	+	2556	4	FSM	ENSMUSG00000053332.14	ENSMUST00000161229.8	2556	4	0	0	0	0	multi-exon	FALSE	canonical	3	4541	junction_3	423.601489872524	1028	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862735	160866109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_160865118_160865564_160865608_160865794_160865843_160866026
transcript_47680.nnic	chr19	+	1672	4	NNC	ENSMUSG00000025171.3	novel	1529	3	NA	NA	-246	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	47.1192341005478	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTAGCACATGACTTCC	NA	False	NA	10	True	AATAAA	-16	NA	41969955	42023082	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_41970310_41970412_41970448_42020327_42020556_42022027
transcript_47682.nnic	chr19	+	1390	3	NNC	ENSMUSG00000025171.3	novel	1529	3	NA	NA	-273	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	51	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTAGCACATGACTTCC	NA	False	NA	10	True	AATAAA	-16	NA	41969928	42023082	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_41970036_42020327_42020556_42022027
transcript_47685.known	chr19	+	1529	3	FSM	ENSMUSG00000025171.3	ENSMUST00000026170.3	1529	3	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	5.5	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTAGCACATGACTTCC	NA	False	NA	10	True	AATAAA	-16	NA	41970201	42023082	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_41970448_42020327_42020556_42022027
transcript_47686.known	chr19	+	493	3	FSM	ENSMUSG00000025171.3	ENSMUST00000237817.2	493	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	52.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAGCCTCCCGAGCCCAC	NA	False	NA	NA	False	NA	NA	NA	42005587	42022134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_42005746_42020327_42020556_42022027
transcript_47687.known	chr19	+	1668	7	FSM	ENSMUSG00000025176.15	ENSMUST00000081714.5	1668	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	1.5723301886761	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAGATCAGATATTTCCA	NA	False	NA	NA	False	NA	NA	NA	42034270	42059392	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_42034550_42048326_42048456_42048605_42048734_42049366_42049502_42049741_42049839_42051630_42051765_42058626
transcript_4769.known	chr1	+	793	11	FSM	ENSMUSG00000053332.14	ENSMUST00000161461.8	793	11	0	0	0	0	multi-exon	FALSE	canonical	3	1206	junction_6	1709.07735342787	2122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862747	160866109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160864150_160864389_160864423_160864693_160864735_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
transcript_47690.nnic	chr19	-	1928	6	NNC	ENSMUSG00000049670.10	novel	1800	5	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	2	25	junction_4	34.0258725090188	81	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTGTGTTATGAACTTT	4127	False	NA	-3	True	AATAAA	-21	NA	42074809	42063380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_42064695_42064893_42065004_42066403_42066519_42066922_42067023_42067100_42067216_42074635
transcript_47691.nnic	chr19	-	1911	6	NNC	ENSMUSG00000049670.10	novel	1800	5	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	2	17	junction_4	36.2745089560148	69	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTGTGTTATGAACTTT	4127	False	NA	-3	True	AATAAA	-21	NA	42074809	42063380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_42064695_42064893_42065004_42066403_42066519_42066922_42067023_42067117_42067216_42074635
transcript_47692.known	chr19	-	1800	5	FSM	ENSMUSG00000049670.10	ENSMUST00000051772.10	1800	5	0	0	0	0	multi-exon	FALSE	canonical	2	63	junction_4	19.0574788468989	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTGTGTTATGAACTTT	4140	False	NA	-3	True	AATAAA	-21	NA	42074796	42063380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_42064695_42064893_42065004_42066403_42066519_42066922_42067023_42074635
transcript_47695.known	chr19	+	1939	10	FSM	ENSMUSG00000025178.10	ENSMUST00000235932.2	1939	10	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_9	126.842081267405	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTCTGTCCAGTTTCCTT	NA	False	NA	19	True	TTTAAA	-37	NA	42078908	42110470	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_42079376_42089075_42089277_42093296_42093429_42093768_42093923_42101481_42101544_42103475_42103576_42104323_42104458_42104945_42105006_42108231_42108424_42110033
transcript_47696.known	chr19	+	3604	9	FSM	ENSMUSG00000025178.10	ENSMUST00000066778.6	3604	9	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_8	28.6135348218286	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAGACACATTTCTGTGG	NA	False	NA	75	True	GATAAA	-14	NA	42078909	42110526	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_42079376_42089075_42089277_42093296_42093429_42093768_42093923_42101481_42101544_42103475_42103576_42104323_42104458_42104945_42105006_42108231
transcript_4770.known	chr1	+	904	10	FSM	ENSMUSG00000053332.14	ENSMUST00000162289.8	904	10	0	0	0	0	multi-exon	FALSE	canonical	3	3085	junction_7	1101.2203780296	927	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAACTGTGAAGTGTGCA	NA	False	NA	16	True	ATTAAA	-12	NA	160862732	160866103	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864857_160864886_160865074_160865608_160865794_160865843_160866026
transcript_47704.known	chr19	-	1044	3	FSM	ENSMUSG00000018821.4	ENSMUST00000018965.4	1044	3	0	0	0	0	multi-exon	FALSE	canonical	3	851	junction_1	12	2923	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTGTCAGAGTGTGCTAC	NA	False	NA	-5	True	AATAAA	-15	NA	42117498	42111711	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_42112288_42113186_42113466_42117309
transcript_47707.known	chr19	+	2573	12	FSM	ENSMUSG00000018820.14	ENSMUST00000099443.11	2573	12	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	33.3877792261314	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTTTGTCAGGTCTCCT	NA	False	NA	7	True	AATAAA	-14	NA	42159032	42180156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_42159108_42159984_42160183_42165827_42165899_42167727_42167930_42169940_42170037_42171097_42171211_42171866_42172004_42172556_42172629_42174243_42174389_42177635_42177683_42177960_42178043_42178821
transcript_47708.known	chr19	+	5611	13	FSM	ENSMUSG00000018820.14	ENSMUST00000169536.8	5611	13	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_9	59.023300483792	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGGCTGACTTCAGTTTC	NA	False	NA	NA	False	ATTAAA	-11	NA	42159005	42183029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_42159225_42159984_42160183_42165827_42165899_42167727_42167930_42169940_42170037_42171097_42171211_42171866_42172004_42172556_42172629_42174058_42174080_42174243_42174389_42177635_42177683_42177960_42178043_42178821
transcript_47709.known	chr19	+	1747	2	FSM	ENSMUSG00000018820.14	ENSMUST00000166788.2	1747	2	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TCAAAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	42159138	42161645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_42159225_42159984
transcript_4771.known	chr1	+	759	10	FSM	ENSMUSG00000053332.14	ENSMUST00000160429.8	759	10	0	0	0	0	multi-exon	FALSE	canonical	3	3085	junction_6	1099.1542202985	1336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACTGTGAAGTGTGCAT	NA	False	NA	17	True	ATTAAA	-13	NA	160862735	160866104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160864150_160864389_160864423_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
transcript_47710.known	chr19	-	1900	3	FSM	ENSMUSG00000018822.8	ENSMUST00000018966.8	1900	3	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTATCCAGTAGTTCT	NA	False	NA	2	True	AATAAA	-26	NA	42190691	42186409	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_42187471_42188219_42188298_42189930
transcript_47712.known	chr19	-	2618	15	FSM	ENSMUSG00000042401.9	ENSMUST00000048630.8	2618	15	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_14	18.8128538342208	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTCTTCCAGCCTCTTTT	NA	False	NA	1	True	GATAAA	-27	NA	42420222	42271473	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_42272120_42272561_42272706_42275611_42275655_42276291_42276438_42286092_42286262_42286721_42286823_42287595_42287679_42290563_42290701_42293108_42293255_42297495_42297631_42307043_42307201_42312150_42312288_42322314_42322512_42402379_42402583_42420048
transcript_47717.nic	chr19	-	1564	11	ISM	ENSMUSG00000042401.9	ENSMUST00000048630.8	2618	15	112868	497	-30961	0	3prime_fragment	FALSE	canonical	3	28	junction_9	16.5758860999948	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCTTTGTGGAAAACTAT	NA	False	NA	-17	True	AATAAA	-17	NA	42307354	42271970	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_-_42272120_42272561_42272706_42275611_42275655_42276291_42276438_42286092_42286262_42286721_42286823_42287595_42287679_42290563_42290701_42293108_42293255_42297495_42297631_42307043
transcript_4772.known	chr1	+	600	8	FSM	ENSMUSG00000053332.14	ENSMUST00000161380.8	600	8	0	0	0	0	multi-exon	FALSE	canonical	3	1206	junction_6	1658.79128603096	524	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAGTCTTTGAAATGTGC	NA	False	NA	NA	False	NA	NA	NA	160862732	160865116	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864735_160864857_160864886_160865074
transcript_47722.nnic	chr19	-	1341	10	NNC	ENSMUSG00000042401.9	novel	2618	15	NA	NA	-19294	0	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_9	18.8325958557674	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCTTTGTGGAAAACTAT	2397	False	NA	-17	True	AATAAA	-17	NA	42295687	42271970	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_42272120_42272561_42272706_42275611_42275655_42276291_42276438_42286092_42286262_42286721_42286823_42287595_42287679_42290563_42290701_42293108_42293255_42295464
transcript_47726.nnic	chr19	-	1783	9	NNC	ENSMUSG00000042401.9	novel	2618	15	NA	NA	-19294	0	intron_retention	FALSE	canonical	2	12	junction_8	19.94993734326	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCTTTGTGGAAAACTAT	2397	False	NA	-17	True	AATAAA	-17	NA	42295687	42271970	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_42272706_42275611_42275655_42276291_42276438_42286092_42286262_42286721_42286823_42287595_42287679_42290563_42290701_42293108_42293255_42295464
transcript_4773.known	chr1	+	403	6	FSM	ENSMUSG00000053332.14	ENSMUST00000161623.8	403	6	0	0	0	0	multi-exon	FALSE	canonical	3	3085	junction_2	1008.25591989336	2244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160864264	160866109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_160864423_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
transcript_47731.nic	chr19	-	972	5	ISM	ENSMUSG00000042401.9	ENSMUST00000048630.8	2618	15	133640	497	-10189	0	3prime_fragment	FALSE	canonical	3	50	junction_1	10.2347447452294	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCTTTGTGGAAAACTAT	NA	False	NA	-17	True	AATAAA	-17	NA	42286582	42271970	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_-_42272120_42272561_42272706_42275611_42275655_42276291_42276438_42286092
transcript_47739.known	chr19	+	4112	7	FSM	ENSMUSG00000025184.11	ENSMUST00000026188.10	4112	7	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	8.08290376865476	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTACATGTTACCTTAT	NA	False	NA	NA	False	NA	NA	NA	42507197	42580782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_42507297_42550990_42552781_42564464_42564641_42570358_42570430_42571263_42571360_42571841_42571983_42579043
transcript_47740.known	chr19	+	950	6	FSM	ENSMUSG00000025184.11	ENSMUST00000160107.2	950	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	35.4942248823664	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTCCGTGGCAGGGCAGG	NA	False	NA	NA	False	AAAACA	-29	NA	42507236	42579449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_42507297_42564464_42564641_42570358_42570430_42571263_42571360_42571841_42571983_42579043
transcript_47741.known	chr19	-	3119	16	FSM	ENSMUSG00000060224.5	ENSMUST00000076505.4	3119	16	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	3.5863940416834	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTCGGTCCAGCCTTGGC	NA	False	NA	NA	False	AATAAA	-18	NA	42741214	42714296	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_42715429_42716095_42716217_42718060_42718168_42719757_42719913_42722159_42722317_42722521_42722595_42723861_42723997_42724334_42724477_42726527_42726626_42726709_42726772_42728773_42728928_42730946_42731103_42735785_42735860_42735935_42736030_42737822_42737843_42740775
transcript_47745.nnic	chr19	-	764	5	NNC	ENSMUSG00000060224.5	novel	869	4	NA	NA	-25	-3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	3.03108891324554	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGAGGGTTGTTGTTGTTGT	NA	False	NA	NA	False	AAGAAA	-16	NA	42741239	42735546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_42735659_42735785_42735860_42735935_42736030_42737822_42737843_42740775
transcript_47747.known	chr19	-	2952	20	FSM	ENSMUSG00000025188.16	ENSMUST00000160455.8	2952	20	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_12	35.0087444557164	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCAAGCCTGTCCCTGGC	NA	False	NA	-5	True	AATAAA	-17	NA	42768415	42743636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_42744236_42744696_42744780_42746231_42746346_42748144_42748290_42748802_42748869_42748948_42749084_42749450_42749513_42750534_42750715_42750831_42751000_42752233_42752284_42754351_42754422_42754568_42754656_42755124_42755273_42755556_42755718_42758044_42758154_42759192_42759336_42759555_42759694_42766560_42766723_42766992_42767086_42768176
transcript_47751.known	chr19	-	2847	20	FSM	ENSMUSG00000025188.16	ENSMUST00000162004.8	2847	20	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_19	17.2102848848348	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTATTTGTGTGTGTACA	NA	False	NA	88	True	NA	NA	NA	42768417	42743543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_42744236_42744696_42744780_42746231_42746346_42748144_42748290_42748802_42748869_42748948_42749084_42749450_42749513_42750534_42750715_42750831_42751000_42752233_42752284_42754351_42754422_42754568_42754656_42755148_42755273_42755556_42755718_42758044_42758154_42759192_42759336_42759555_42759694_42766560_42766723_42766992_42767086_42768352
transcript_47755.nic	chr19	-	841	6	ISM	ENSMUSG00000025188.16	ENSMUST00000069298.13	3196	18	-22	11403	-9	-2673	5prime_fragment	FALSE	canonical	3	80	junction_5	24.5715282390005	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCATTGTCCTGTTATTTT	NA	False	NA	NA	False	NA	NA	NA	42768426	42757922	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_-_42758154_42759192_42759336_42759555_42759694_42766560_42766723_42766992_42767086_42768352
transcript_47758.known	chr19	-	462	3	FSM	ENSMUSG00000025188.16	ENSMUST00000161252.2	462	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	66	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTCCTCCACAAAGGCTGA	6531	False	NA	NA	False	NA	NA	NA	42746268	42744021	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_42744236_42744696_42744780_42746103
transcript_4776.known	chr1	-	3619	17	FSM	ENSMUSG00000026709.11	ENSMUST00000035430.4	3619	17	0	0	0	0	multi-exon	TRUE	canonical	3	321	junction_5	41.9044672439586	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCCCTGCATGTCCTGAAC	NA	False	NA	NA	False	NA	NA	NA	160898228	160868170	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_160869501_160871182_160871259_160872528_160872640_160872827_160873047_160874346_160874500_160877507_160877571_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160897562
transcript_47760.known	chr19	-	3196	18	FSM	ENSMUSG00000025188.16	ENSMUST00000069298.13	3196	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	38.8406379415856	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCCACTTGTATTTTATC	NA	False	NA	NA	False	AGTAAA	-13	NA	42768404	42746519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_42747747_42748144_42748290_42748802_42748869_42748948_42749084_42749450_42749513_42750534_42750715_42750831_42751000_42752233_42752284_42754351_42754422_42754568_42754656_42755124_42755273_42755556_42755718_42758044_42758154_42759192_42759336_42759555_42759694_42766560_42766723_42766992_42767086_42768352
transcript_47761.known	chr19	-	584	2	FSM	ENSMUSG00000114742.2	ENSMUST00000225283.2	584	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTGTGTGTTCATATA	NA	False	NA	NA	False	ATTAAA	-19	NA	43428899	43423048	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_43423524_43428790
transcript_47762.known	chr19	+	318	2	FSM	ENSMUSG00000025189.10	ENSMUST00000225191.2	318	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCAGACGGGGAGCGAGCCT	NA	False	NA	NA	False	AAGAAA	-7	NA	43481954	43483419	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_43482251_43483397
transcript_47764.known	chr19	-	2058	9	FSM	ENSMUSG00000025190.14	ENSMUST00000026196.14	2058	9	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_5	49.6934351801121	1763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGTTTGTGATCCATTCA	8317	False	NA	-3	True	NA	NA	NA	43513044	43488190	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_43488997_43491346_43491490_43492960_43493127_43493214_43493366_43495360_43495466_43495760_43495874_43496308_43496433_43504119_43504302_43512776
transcript_4777.nic	chr1	-	2170	17	NIC	ENSMUSG00000026709.11	novel	3619	17	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_16	96.678510409501	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGTATTTAGAGTCTTCC	NA	False	NA	-16	True	AATGAA	-26	NA	160898233	160869074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_160869501_160871182_160871259_160872528_160872640_160872827_160873047_160874346_160874500_160877507_160877571_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160898112
transcript_47770.known	chr19	-	720	3	FSM	ENSMUSG00000025190.14	ENSMUST00000124954.2	720	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	416.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTGAGAGTATTTTGCT	8437	False	NA	NA	False	AATGAA	-22	NA	43512924	43500692	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_43501083_43504119_43504302_43512776
transcript_47771.known	chr19	+	1214	3	FSM	ENSMUSG00000118236.2	ENSMUST00000237632.2	1214	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAGGGCTTAAGAAATAAAC	NA	False	NA	NA	False	NA	NA	NA	43634188	43640974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_43634860_43635408_43635654_43640676
transcript_47772.known	chr19	-	1535	4	FSM	ENSMUSG00000040414.9	ENSMUST00000046038.9	1535	4	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_2	77.3146529162199	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGTGTTGGGTTTGTCTT	NA	False	NA	-3	True	ATTAAA	-19	NA	43663320	43652239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_43653083_43654210_43654268_43655353_43655583_43662914
transcript_47773.known	chr19	+	1829	9	FSM	ENSMUSG00000025192.14	ENSMUST00000144314.2	1829	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	3.11247489949718	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACATAAACAATGGTTATT	2807	False	NA	NA	False	ATTAAA	-33	NA	43678278	43711013	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_43678344_43678617_43678721_43679456_43679640_43692637_43692844_43693318_43693470_43700173_43700278_43704712_43704770_43705888_43706023_43710187
transcript_47775.known	chr19	+	788	9	FSM	ENSMUSG00000025193.15	ENSMUST00000153295.2	788	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	10.6036550302242	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGACAAAAGTAAGGACTTT	9313	False	NA	NA	False	NA	NA	NA	43741575	43756677	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_43741660_43744064_43744131_43747166_43747227_43748288_43748499_43749127_43749164_43751311_43751446_43753398_43753427_43755639_43755746_43756613
transcript_47776.known	chr19	+	1298	9	FSM	ENSMUSG00000025193.15	ENSMUST00000026199.14	1298	9	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	8.4400459121974	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTGTTATAGTCTCAGG	9172	False	NA	9	True	AATAAA	-12	NA	43741434	43757070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_43741660_43744058_43744131_43747166_43747227_43748288_43748499_43749127_43749164_43751341_43751446_43753398_43753427_43755639_43755746_43756613
transcript_47777.known	chr19	-	4798	9	FSM	ENSMUSG00000040018.10	ENSMUST00000045562.6	4798	9	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_3	36.2782217728488	172	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTTTTGAACATACTAAT	NA	False	NA	NA	False	NA	NA	NA	43741439	43721692	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_43725292_43726475_43726590_43728275_43728431_43730271_43730354_43732055_43732224_43735174_43735362_43737228_43737352_43739782_43739974_43741260
transcript_47781.nnic	chr19	+	1133	8	NIC	ENSMUSG00000025193.15	novel	1298	9	NA	NA	-41	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	11.696851137405	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTGTTATAGTCTCAGG	9233	False	NA	9	True	AATAAA	-12	NA	43741495	43757070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_+_43741660_43744058_43744131_43747166_43747227_43748288_43748499_43749127_43749164_43753398_43753427_43755639_43755746_43756613
transcript_47786.known	chr19	+	607	4	FSM	ENSMUSG00000025194.6	ENSMUST00000129943.2	607	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTGTGACCCAAGTGTCT	3378	False	NA	NA	False	NA	NA	NA	43786424	43789208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_43786635_43786845_43786954_43787528_43787585_43788975
transcript_47787.known	chr19	-	3901	14	FSM	ENSMUSG00000025195.10	ENSMUST00000212592.2	3901	14	0	0	0	0	multi-exon	TRUE	canonical	3	34	junction_13	13.2052526755398	140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGAGTGTGTTTCCTTC	NA	False	NA	-6	True	AATAAA	-14	NA	43868207	43835260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_43836718_43838214_43838766_43840662_43840862_43842571_43842752_43843235_43843569_43844940_43845070_43855027_43855133_43855965_43856097_43857243_43857444_43858027_43858046_43858600_43858749_43862596_43862697_43863265_43863460_43868051
transcript_47791.nnic	chr19	-	1516	8	NNC	ENSMUSG00000025196.5	novel	1828	9	NA	NA	-7163	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	14.6231574803076	45	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGCCACTTGCATGCCT	4388	False	NA	3	True	ATTAAA	-22	NA	43964295	43944745	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_43945076_43948424_43948544_43952169_43952270_43954613_43954754_43956891_43957004_43958440_43958624_43962371_43962528_43963919
transcript_47792.nnic	chr19	-	1284	8	NNC	ENSMUSG00000025196.5	novel	1828	9	NA	NA	-7155	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_7	14.059639731791	45	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGCCACTTGCATGCCT	4396	False	NA	3	True	ATTAAA	-22	NA	43964287	43944745	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_43945076_43948424_43948544_43952169_43952270_43954613_43954754_43956891_43957004_43958440_43958624_43962371_43962528_43964143
transcript_47793.known	chr19	-	1916	9	FSM	ENSMUSG00000025197.10	ENSMUST00000026211.10	1916	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4.84606799374503	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTTTGTATGTTTGACT	4131	False	NA	NA	False	AATAAA	-18	NA	44017638	43993460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_43994062_43995462_43995605_44000721_44000910_44002014_44002157_44003342_44003520_44004104_44004266_44005174_44005325_44010000_44010164_44017446
transcript_47794.nnic	chr19	-	1155	3	NNC	ENSMUSG00000025197.10	novel	1916	9	NA	NA	21515	0	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_2	6.5	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTTTGTATGTTTGACT	9466	False	NA	NA	False	AATAAA	-18	NA	43996123	43993460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_43994062_43995462_43995605_43995711
transcript_47796.nnic	chr19	-	968	3	NNC	ENSMUSG00000025197.10	novel	1916	9	NA	NA	21508	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	7	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTTTGTATGTTTGACT	9459	False	NA	NA	False	AATAAA	-18	NA	43996130	43993460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_43994062_43995462_43995605_43995905
transcript_47797.known	chr19	-	3228	12	FSM	ENSMUSG00000025198.17	ENSMUST00000071698.13	3228	12	0	0	0	0	multi-exon	TRUE	canonical	3	64	junction_11	39.5783562189201	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTGTGTGTTCTATTTTC	NA	False	NA	-2	True	AATAAA	-19	NA	44058214	44023382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_44025588_44027611_44027692_44029185_44029276_44036073_44036166_44037560_44037620_44044560_44044635_44047489_44047616_44050281_44050344_44051457_44051505_44056038_44056121_44057710_44057835_44058027
transcript_47800.known	chr19	-	3136	12	FSM	ENSMUSG00000025198.17	ENSMUST00000112028.10	3136	12	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_11	27.8217466521579	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTGTGTGTTCTATTTTC	NA	False	NA	-2	True	AATAAA	-19	NA	44058224	44023382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_44025588_44027611_44027692_44029185_44029276_44036073_44036166_44037560_44037620_44044560_44044635_44047489_44047616_44050281_44050344_44051457_44051505_44056038_44056121_44057710_44057835_44058129
transcript_47801.known	chr19	-	2083	2	FSM	ENSMUSG00000025198.17	ENSMUST00000170577.2	2083	2	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	44058183	44054510	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_44056121_44057710
transcript_47802.nnic	chr19	-	3390	21	NNC	ENSMUSG00000025199.17	novel	3502	21	NA	NA	94	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_20	66.1814739938603	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGAATCTCTACTCATTT	NA	False	NA	-1	True	ATTAAA	-15	NA	44095627	44061773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_44062980_44063869_44063970_44065684_44065819_44066731_44066880_44067327_44067425_44070384_44070435_44071024_44071135_44072855_44072918_44075346_44075499_44076354_44076479_44077113_44077217_44079371_44079567_44084662_44084799_44085347_44085456_44085641_44085767_44085880_44085971_44087023_44087113_44088588_44088659_44090175_44090291_44092096_44092192_44095546
transcript_47803.known	chr19	-	3481	21	FSM	ENSMUSG00000025199.17	ENSMUST00000119591.2	3481	21	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_2	45.2515193115104	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTGAATCTCTACTCATT	NA	False	NA	-2	True	ATTAAA	-14	NA	44095916	44061774	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_44062980_44063869_44063970_44065701_44065819_44066731_44066880_44067327_44067425_44070384_44070435_44071024_44071135_44072855_44072918_44075346_44075499_44076354_44076479_44077113_44077217_44079371_44079567_44084662_44084799_44085347_44085456_44085641_44085767_44085880_44085971_44087023_44087113_44088588_44088659_44090175_44090291_44092096_44092192_44095726
transcript_47805.known	chr19	-	2337	16	FSM	ENSMUSG00000025199.17	ENSMUST00000147423.8	2337	16	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_3	19.8510005345379	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCCCAACAAAAGGGAAGAAA	NA	False	NA	NA	False	NA	NA	NA	44095908	44069853	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_44070435_44071024_44071135_44072855_44072918_44075346_44075499_44076354_44076479_44077113_44077217_44079371_44079567_44084662_44084799_44085347_44085456_44085641_44085767_44085880_44085971_44087023_44087113_44088588_44088659_44090175_44090291_44092096_44092192_44095726
transcript_47806.known	chr19	-	3581	14	FSM	ENSMUSG00000025200.8	ENSMUST00000026218.7	3581	14	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_12	11.4813973542901	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTCACTGTAGAAACCAG	NA	False	NA	NA	False	AAAAAG	-2	NA	44124315	44097075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_44099100_44101387_44101486_44102112_44102233_44102962_44103173_44109311_44109392_44110287_44110400_44111582_44111724_44113246_44113332_44115804_44115924_44117636_44117852_44119850_44119953_44120524_44120604_44121438_44121524_44124204
transcript_47815.nic	chr19	-	388	4	ISM	ENSMUSG00000025200.8	ENSMUST00000237939.2	963	9	-26	9492	-11	0	5prime_fragment	FALSE	canonical	3	133	junction_2	12.7104506432917	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAAGTCAAAAAAAATTTTG	NA	False	NA	NA	False	AAAACA	-13	NA	44124326	44119850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_-_44119953_44120524_44120604_44121438_44121524_44124204
transcript_4782.nic	chr1	-	2680	16	NIC	ENSMUSG00000026709.11	novel	3619	17	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_5	101.925768195399	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGTATTTAGAGTCTTCC	NA	False	NA	-16	True	AATGAA	-26	NA	160898256	160869074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_160869501_160871182_160871259_160872528_160872640_160872827_160873047_160874346_160874500_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160897562
transcript_47821.known	chr19	-	885	5	FSM	ENSMUSG00000057506.6	ENSMUST00000079033.6	885	5	0	0	0	0	multi-exon	FALSE	canonical	3	1199	junction_4	51.0165414351071	5573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACAAAACAAATGTGGGT	963	False	NA	NA	False	ATTAAA	-5	NA	44134885	44127697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_44128153_44130562_44130668_44131459_44131580_44134379_44134497_44134797
transcript_47822.known	chr19	-	683	5	FSM	ENSMUSG00000057506.6	ENSMUST00000237867.2	683	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	551.264625656318	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATATGTAGTAAGTAGCA	1010	False	NA	NA	False	AATAAA	-17	NA	44134838	44130166	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_44130467_44130562_44130668_44131459_44131580_44134379_44134497_44134797
transcript_47823.known	chr19	-	3321	15	FSM	ENSMUSG00000037578.5	ENSMUST00000042026.5	3321	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	23.366206192635	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTTTGCATTTCCTTCTG	NA	False	NA	-1	True	AATAAA	-17	NA	44180881	44136075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_44136988_44137591_44137716_44137967_44138087_44138850_44138969_44140471_44140594_44140802_44140902_44142097_44142219_44142502_44142685_44142862_44143034_44143886_44144116_44144279_44144505_44145490_44145745_44146075_44146204_44179859_44179974_44180478
transcript_47838.known	chr19	+	655	3	FSM	ENSMUSG00000025202.9	ENSMUST00000237324.2	655	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	4	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAGCAGAAATTCTCCTGT	NA	False	NA	7	True	ATTAAA	-25	NA	44226253	44230457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_44226317_44226814_44227048_44230098
transcript_47839.known	chr19	+	5455	6	FSM	ENSMUSG00000025203.7	ENSMUST00000026221.7	5455	6	0	0	0	0	multi-exon	FALSE	canonical	3	2597	junction_1	100.817458805507	978	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGTGGTGTTTTGGCT	1067	False	NA	22	True	AATAAA	-23	NA	44282112	44295303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439
transcript_4784.known	chr1	-	2126	14	FSM	ENSMUSG00000026709.11	ENSMUST00000160591.8	2126	14	0	0	0	0	multi-exon	FALSE	canonical	3	321	junction_2	32.3146512651852	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGATAAAAATTGAGCCTA	NA	False	NA	NA	False	NA	NA	NA	160898177	160872752	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_160873047_160874346_160874500_160877507_160877571_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160897562
transcript_47846.known	chr19	+	2166	6	FSM	ENSMUSG00000025203.7	ENSMUST00000237039.2	2166	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1062.75159844622	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATAAGGATTTTCTTTTC	1469	False	NA	NA	False	AGTAAA	-31	NA	44282514	44292417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288263_44289660_44289884_44291439
transcript_47850.known	chr19	-	4832	6	FSM	ENSMUSG00000037071.4	ENSMUST00000041331.4	4832	6	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_3	163.124001912655	556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGAGCTTTTGTGTGTGGT	-4	True	NA	-5	True	AATAAA	-22	NA	44396148	44382893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_44386558_44388580_44388814_44390131_44390338_44391603_44391735_44394925_44395200_44395824
transcript_47851.known	chr19	-	329	3	FSM	ENSMUSG00000037071.4	ENSMUST00000235741.2	329	3	0	0	0	0	multi-exon	FALSE	canonical	1	10	junction_2	249	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCCCTCCACCTGGAAGAA	7270	False	NA	NA	False	AATGAA	-20	NA	44396318	44395123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_44395200_44395824_44396018_44396258
transcript_47858.known	chr19	-	603	5	FSM	ENSMUSG00000025204.11	ENSMUST00000168083.2	603	5	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_4	2211.89753096747	3720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGCTCTGGTTTCTGTGT	1995	False	NA	-20	True	AATAAA	-16	NA	44543858	44538691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_44538852_44541136_44541293_44542107_44542208_44543369_44543454_44543755
transcript_47869.known	chr19	-	680	5	FSM	ENSMUSG00000025204.11	ENSMUST00000026222.11	680	5	0	0	0	0	multi-exon	FALSE	canonical	3	4404	junction_1	502.944517317765	45629	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTCTCTTTCTCCAGG	1974	False	NA	-7	True	AATAAA	-29	NA	44543879	44538678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_44538852_44541136_44541293_44542107_44542208_44543369_44543497_44543755
transcript_47870.known	chr19	-	2142	5	FSM	ENSMUSG00000025204.11	ENSMUST00000171415.8	2142	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	2269.24749366392	521	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTTTCTGGATTTTGTAA	1988	False	NA	NA	False	AATAAA	-16	NA	44543865	44537010	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_44538660_44541136_44541293_44542107_44542208_44543369_44543497_44543755
transcript_47871.known	chr19	-	341	2	FSM	ENSMUSG00000025204.11	ENSMUST00000164543.2	341	2	0	0	0	0	multi-exon	FALSE	canonical	3	4404	junction_1	0	1288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGCTCTGGTTTCTGT	4534	False	NA	-22	True	AATAAA	-14	NA	44541319	44538693	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_44538852_44541136
transcript_47872.known	chr19	-	419	4	FSM	ENSMUSG00000025204.11	ENSMUST00000167027.2	419	4	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_3	2490.02400702394	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACATGTACATCAGGAATC	2010	False	NA	NA	False	NA	NA	NA	44543843	44541278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_44541293_44542107_44542208_44543369_44543497_44543665
transcript_47873.known	chr19	+	6194	8	FSM	ENSMUSG00000036450.5	ENSMUST00000040455.5	6194	8	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_5	13.1583759310508	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTATGTGACTTATTTAAA	NA	False	NA	11	True	NA	NA	NA	44551288	44564713	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_44551494_44551728_44551980_44554316_44554466_44556773_44556920_44557842_44557950_44558331_44558396_44558665_44558777_44559552
transcript_47878.known	chr19	+	868	2	FSM	ENSMUSG00000036450.5	ENSMUST00000131032.2	868	2	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGATTGTG	NA	False	NA	NA	False	NA	NA	NA	44551288	44552391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_44551494_44551728
transcript_47880.nnic	chr19	-	643	3	NNC	ENSMUSG00000097683.3	novel	968	2	NA	NA	-22866	-634	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.5	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGCTCTGAGCCTGCTTC	NA	False	NA	NA	False	ATTAAA	-34	NA	44706765	44681429	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_44681736_44705793_44705943_44706577
transcript_47882.nic	chr19	+	501	3	ISM	ENSMUSG00000036097.9	ENSMUST00000236895.2	6180	20	-56	47573	-47	2988	5prime_fragment	FALSE	canonical	3	181	junction_1	9	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAACCTAAGAGGATGTC	996	False	NA	NA	False	NA	NA	NA	44919542	44923481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_+_44919890_44922550_44922595_44923371
transcript_47883.known	chr19	+	892	1	FSM	ENSMUSG00000036097.9	ENSMUST00000236356.2	892	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGAACTTGGTACTGTCTTT	1055	False	NA	NA	False	AATAAA	-16	NA	44919601	44920493	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_44919600_44920500
transcript_47884.known	chr19	+	1371	7	FSM	ENSMUSG00000025207.17	ENSMUST00000238104.2	1371	7	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	1.15470053837925	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGATGCTGAGTTTGTGTT	NA	False	NA	NA	False	AATAAA	-11	NA	44977699	44985726	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_44977797_44980576_44981078_44981172_44981322_44981558_44981622_44984907_44985007_44985118_44985213_44985358
transcript_47886.known	chr19	+	636	3	FSM	ENSMUSG00000025207.17	ENSMUST00000235970.2	636	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGACCCTCACTGCGGA	NA	False	NA	NA	False	NA	NA	NA	44977776	44981006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_44977797_44979611_44979798_44980576
transcript_47887.known	chr19	+	2195	5	FSM	ENSMUSG00000025209.6	ENSMUST00000236685.2	2195	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	67.8122407829147	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTGCGTTTTTTCTTA	1658	False	NA	26	True	AATGAA	-19	NA	44994101	45001201	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_44994627_44997718_44997960_44998570_44998679_44998856_44998999_45000022
transcript_47889.known	chr19	+	3488	5	FSM	ENSMUSG00000025209.6	ENSMUST00000026227.3	3488	5	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	30.3593066455741	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTGCGTTTTTTCTTA	2553	False	NA	26	True	AATGAA	-19	NA	44994996	45001201	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_44996815_44997718_44997960_44998570_44998679_44998856_44998999_45000022
transcript_4789.known	chr1	+	1914	6	FSM	ENSMUSG00000026708.17	ENSMUST00000192850.6	1914	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	49.9095181303126	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGTGTTTCCAATTGAAG	NA	False	NA	6	True	AATAAA	-12	NA	160898461	160913894	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_160898927_160902326_160902501_160905798_160906051_160907437_160907581_160910477_160911021_160913557
transcript_47891.known	chr19	+	3062	5	FSM	ENSMUSG00000035342.15	ENSMUST00000039016.14	3062	5	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	41.4517792139252	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATTTAAAAAAAAAA	1252	False	NA	NA	False	NA	NA	NA	45003303	45015469	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_45003763_45009825_45010276_45011980_45012644_45013157_45013419_45014240
transcript_47892.known	chr19	+	2798	5	FSM	ENSMUSG00000035342.15	ENSMUST00000179108.9	2798	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	54.407605166925	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATCCATCTCTGCTTGCT	1587	False	NA	NA	False	GATAAA	-23	NA	45003638	45015550	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_45003753_45009825_45010276_45011980_45012644_45013157_45013419_45014240
transcript_47894.known	chr19	+	2694	5	FSM	ENSMUSG00000035342.15	ENSMUST00000178087.3	2694	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	34.0954542424646	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGTTTGACATCCATCT	5	True	NA	NA	False	GATAAA	-14	NA	45006650	45015541	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_45006670_45009825_45010276_45011980_45012644_45013157_45013419_45014240
transcript_47898.known	chr19	+	2867	11	FSM	ENSMUSG00000025212.18	ENSMUST00000062213.13	2867	11	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_2	13.7767920794356	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGATCTTCAGTTATTCC	NA	False	NA	7	True	AATAAA	-18	NA	45036112	45044821	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_45036330_45037542_45037707_45038182_45038354_45038666_45038766_45039088_45039165_45039314_45039401_45040534_45040663_45040849_45040900_45042108_45042159_45042740_45042789_45043043
transcript_4790.known	chr1	+	1756	6	FSM	ENSMUSG00000026708.17	ENSMUST00000192150.6	1756	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	51.3754805330325	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGTGTTTCCAATTGAAG	NA	False	NA	6	True	AATAAA	-12	NA	160898519	160913894	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_160898927_160902326_160902501_160905898_160906051_160907437_160907581_160910477_160911021_160913557
transcript_47901.known	chr19	+	2867	10	FSM	ENSMUSG00000025212.18	ENSMUST00000111954.11	2867	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	32.4961536185439	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGATCTTCAGTTATTCCA	NA	False	NA	8	True	AATAAA	-19	NA	45036014	45044822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_45036330_45037542_45037707_45038182_45038354_45039088_45039165_45039314_45039401_45040534_45040663_45040849_45040900_45042108_45042159_45042740_45042789_45043043
transcript_47915.nnic	chr19	-	468	3	NIC	ENSMUSG00000100417.3	novel	797	5	NA	NA	26	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	1.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTACTGATGCGTTGGGT	NA	False	NA	NA	False	NA	NA	NA	45299503	45288908	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_45289200_45291305_45291390_45299410
transcript_47916.nic	chr19	-	502	3	NIC	ENSMUSG00000100417.3	novel	797	5	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	0.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTACTGATGCGTTGGGT	NA	False	NA	NA	False	NA	NA	NA	45299534	45288908	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_45289200_45298355_45298443_45299410
transcript_47917.nnic	chr19	-	805	3	NNC	ENSMUSG00000100417.3	novel	797	5	NA	NA	1343	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2.5	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCACTACTGATGCGTTGG	NA	False	NA	NA	False	NA	NA	NA	45290433	45288910	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_45289200_45289581_45289800_45290135
transcript_47918.known	chr19	-	762	2	FSM	ENSMUSG00000100417.3	ENSMUST00000187954.3	762	2	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTACTGATGCGTTGGGT	NA	False	NA	NA	False	NA	NA	NA	45291776	45288908	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_45289200_45291305
transcript_47919.nnic	chr19	-	459	2	NIC	ENSMUSG00000100417.3	novel	797	5	NA	NA	-49	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTACTGATGCGTTGGGT	NA	False	NA	NA	False	NA	NA	NA	45299578	45288908	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_45289200_45299410
transcript_4792.known	chr1	+	1910	5	FSM	ENSMUSG00000026708.17	ENSMUST00000111620.10	1910	5	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_2	18.1710621593786	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAGTTATTTATTCTGTT	NA	False	NA	20	True	AATAAA	-26	NA	160898336	160913908	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_160898927_160902326_160902501_160905798_160906051_160910477_160911021_160913557
transcript_47926.known	chr19	+	2978	15	FSM	ENSMUSG00000025217.16	ENSMUST00000065601.13	2978	15	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_1	116.411041625118	1011	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGCTCTGTGGCTCGAA	NA	False	NA	NA	False	NA	NA	NA	45352189	45518452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_45352326_45411571_45411680_45444971_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
transcript_4793.known	chr1	+	1997	5	FSM	ENSMUSG00000026708.17	ENSMUST00000143486.7	1997	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	42.0200844834943	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGGTCTTGTCTTTGTTG	NA	False	NA	12	True	NA	NA	NA	160898535	160914294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_160898927_160902326_160902501_160905898_160906051_160910477_160911021_160913557
transcript_47931.known	chr19	+	2064	14	FSM	ENSMUSG00000025217.16	ENSMUST00000111936.4	2064	14	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_1	132.758623339525	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGAATCTCTCTTGCTT	NA	False	NA	13	True	TATAAA	-15	NA	45352271	45517728	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_45352326_45444971_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
transcript_47956.nnic	chr19	-	1885	3	Genic_Genomic	ENSMUSG00000057605.5	novel	888	1	NA	NA	-52	53553	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGGCTGATCTTCCAGA	2147	False	NA	NA	False	AATAAA	-26	NA	45439686	45385193	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr19_-_45385856_45385981_45386221_45438702
transcript_47958.nnic	chr19	-	1946	3	Genic_Genomic	ENSMUSG00000057605.5	novel	888	1	NA	NA	-26	53553	multi-exon	FALSE	canonical	0	0	junction_1	0	14169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGGCTGATCTTCCAGA	2173	False	NA	NA	False	AATAAA	-26	NA	45439660	45385193	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr19_-_45385856_45385981_45386308_45438702
transcript_4796.known	chr1	+	4883	4	FSM	ENSMUSG00000026708.17	ENSMUST00000028035.14	4883	4	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_2	20.7417989148054	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAATGCTGGTCTTGTCTTT	NA	False	NA	8	True	NA	NA	NA	160898282	160914290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_160898927_160902326_160902501_160905798_160906051_160910477
transcript_47961.known	chr19	-	888	1	FSM	ENSMUSG00000057605.5	ENSMUST00000077435.5	888	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3273	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGTTAACCTCATTAAACA	2199	False	NA	-44	True	NA	NA	NA	45439634	45438746	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_45438700_45439600
transcript_47963.known	chr19	-	2324	9	FSM	ENSMUSG00000025218.7	ENSMUST00000026239.7	2324	9	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_8	11.9973955507018	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGCTGTCTGTGAGCT	NA	False	NA	2	True	AATAAA	-19	NA	45548970	45540713	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_45541610_45541947_45542117_45543529_45543659_45544360_45544535_45546153_45546472_45546694_45546855_45547063_45547359_45548018_45548156_45548924
transcript_4797.nic	chr1	+	1294	4	ISM	ENSMUSG00000026708.17	ENSMUST00000143486.7	1997	5	-19	3259	-3	-5	5prime_fragment	FALSE	canonical	3	21	junction_2	48.0832611206852	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAATTAGATTTTTTTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	160898516	160911035	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_160898927_160902326_160902501_160905898_160906051_160910477
transcript_47970.known	chr19	+	687	7	FSM	ENSMUSG00000041035.10	ENSMUST00000235805.2	687	7	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	211.143447815829	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGGCAGTGCTGGGGACTGT	3712	False	NA	NA	False	NA	NA	NA	45549073	45565982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_45549147_45549425_45549524_45553349_45553431_45560323_45560449_45560843_45560978_45565431_45565535_45565909
transcript_47972.known	chr19	+	1353	6	FSM	ENSMUSG00000041035.10	ENSMUST00000047057.9	1353	6	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_3	22.5601418435257	1262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAATGGTAGCATGTTTCC	3692	False	NA	NA	False	ATTAAA	-19	NA	45549053	45566726	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_45549147_45553349_45553431_45560323_45560449_45560843_45560978_45565431_45565535_45565909
transcript_47973.known	chr19	-	5057	16	FSM	ENSMUSG00000025220.9	ENSMUST00000026243.5	5057	16	0	0	0	0	multi-exon	FALSE	canonical	3	653	junction_7	84.8678973464054	169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGCTGTGCTGCTTTTT	5476	False	NA	-12	True	AATAAA	-13	NA	45771990	45738697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_45740720_45743045_45743206_45746343_45746537_45746787_45746874_45749542_45749648_45750623_45750710_45753888_45754064_45755832_45756447_45758489_45758649_45760120_45760406_45762100_45762200_45764486_45764659_45765325_45765457_45767025_45767124_45767470_45767523_45771370
transcript_47981.known	chr19	-	888	6	FSM	ENSMUSG00000056209.8	ENSMUST00000070215.8	888	6	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_3	39.9229257444892	9113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTGTGGCTTTTTCAA	4887	False	NA	0	True	AATAAA	-27	NA	45738030	45736172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_45736491_45736602_45736720_45736984_45737079_45737188_45737309_45737495_45737582_45737877
transcript_47986.known	chr19	-	1005	8	FSM	ENSMUSG00000025221.17	ENSMUST00000086993.11	1005	8	0	0	0	0	multi-exon	TRUE	canonical	3	6	junction_7	6.66394502268034	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAGAGACCACACTAGACG	NA	False	NA	NA	False	NA	NA	NA	45800730	45781787	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_45782157_45782439_45782503_45782637_45782743_45782918_45783027_45783178_45783250_45783416_45783487_45784018_45784144_45800636
transcript_47988.known	chr19	-	3676	26	FSM	ENSMUSG00000039901.11	ENSMUST00000045396.9	3676	26	0	0	0	0	multi-exon	TRUE	canonical	3	159	junction_20	17.3221707646588	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTGTCTCGTTAGTGTC	6647	False	NA	-3	True	ATTAAA	-17	NA	45986927	45805802	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_45807418_45808712_45808830_45834546_45834626_45874390_45874467_45879646_45879774_45880504_45880588_45910055_45910145_45920789_45920851_45922224_45922295_45924800_45924867_45928883_45928943_45934440_45934543_45939100_45939195_45941063_45941140_45941862_45941910_45945118_45945180_45946845_45946890_45948751_45948809_45953602_45953690_45953800_45953876_45954680_45954774_45961261_45961370_45963405_45963553_45963657_45963715_45967038_45967152_45986854
transcript_47995.known	chr19	-	1942	21	FSM	ENSMUSG00000039901.11	ENSMUST00000235131.2	1942	21	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	43.8	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATGCTTGCCTGTGTAT	6647	False	NA	NA	False	AATAAA	-10	NA	45986927	45906882	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_45907246_45910055_45910145_45920789_45920851_45922224_45922295_45924800_45924867_45928883_45928943_45934440_45934543_45939100_45939195_45941063_45941140_45941862_45941910_45945118_45945180_45946845_45946890_45948751_45948809_45953602_45953690_45953800_45953876_45954680_45954774_45961261_45961370_45963405_45963553_45963657_45963715_45967038_45967152_45986854
transcript_4800.nnic	chr1	+	1296	3	NIC	ENSMUSG00000026708.17	novel	1914	6	NA	NA	-9	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	51	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGTGTTTCCAATTGAAG	NA	False	NA	6	True	AATAAA	-12	NA	160898510	160913894	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_160898927_160910477_160911021_160913557
transcript_48003.known	chr19	-	480	1	FSM	ENSMUSG00000117972.2	ENSMUST00000236365.2	480	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATGTACACAAAGAAATAA	NA	False	NA	NA	False	NA	NA	NA	45866565	45866085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_45866100_45866600
transcript_48004.known	chr19	+	2666	1	FSM	ENSMUSG00000074811.4	ENSMUST00000099393.4	2666	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGCGTGTTAAGTTTTG	NA	False	NA	25	True	AATATA	-14	NA	45991946	45994612	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_45991900_45994600
transcript_48006.known	chr19	-	2108	11	FSM	ENSMUSG00000025223.16	ENSMUST00000152946.8	2108	11	0	0	0	0	multi-exon	TRUE	canonical	3	192	junction_1	177.433255056655	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACTCATGTTCCCCTATT	6718	False	NA	-30	True	ATTAAA	-21	NA	46033653	46021031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_46021781_46022476_46022620_46022827_46022952_46023049_46023134_46023262_46023386_46023859_46024033_46024173_46024277_46024362_46024439_46024545_46024591_46024701_46024805_46033268
transcript_48007.known	chr19	-	2295	11	FSM	ENSMUSG00000025223.16	ENSMUST00000056931.14	2295	11	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_10	244.379806858095	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCACTCATGTTCCCCTAT	8088	False	NA	-31	True	ATTAAA	-20	NA	46028060	46021032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_46021781_46022470_46022620_46022827_46022952_46023049_46023134_46023262_46023386_46023859_46024033_46024173_46024277_46024362_46024439_46024545_46024591_46024701_46024805_46027493
transcript_48010.known	chr19	+	5246	14	FSM	ENSMUSG00000055491.15	ENSMUST00000111899.8	5246	14	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_7	80.0611452719015	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCAGCGTGTCCTTTCTG	NA	False	NA	5	True	AATAAA	-17	NA	46044977	46061350	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_46045183_46049841_46050016_46050582_46050730_46050840_46050943_46051050_46053920_46054102_46054157_46055667_46055726_46056459_46056528_46057477_46058208_46059715_46059851_46059957_46060025_46060140_46060263_46060621_46060774_46060987
transcript_48012.nic	chr19	+	1109	5	ISM	ENSMUSG00000055491.15	ENSMUST00000099392.10	3956	9	-92	9864	-50	248	5prime_fragment	TRUE	canonical	3	156	junction_4	123.331869360681	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGGCTGTGTTGTACTGG	NA	False	NA	NA	False	NA	NA	NA	46044927	46051490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_+_46045183_46049841_46050016_46050582_46050730_46050840_46050934_46051050
transcript_48015.known	chr19	+	3523	13	FSM	ENSMUSG00000015176.12	ENSMUST00000223728.2	3523	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	265.145819419344	1114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTCAGAGTTATGTCGT	244	False	NA	13	True	AATAAA	-16	NA	46064408	46073969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068349_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
transcript_48017.known	chr19	+	6450	40	FSM	ENSMUSG00000025224.17	ENSMUST00000026254.14	6450	40	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_33	16.0207377114128	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTCCCGCTGATTTTC	9051	False	NA	19	True	AATAAA	-19	NA	46140947	46274949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_46141232_46151958_46152065_46159095_46159163_46234527_46234660_46240552_46240672_46242425_46242535_46242995_46243057_46244091_46244147_46247542_46247691_46248011_46248236_46249151_46249318_46250059_46250272_46250872_46250972_46253217_46253413_46253616_46253807_46254025_46254167_46254463_46254553_46255641_46255845_46256431_46256556_46256829_46256956_46257217_46257301_46258183_46258421_46258696_46258791_46259112_46259290_46259993_46260059_46260145_46260270_46260424_46260497_46260613_46260709_46260939_46261094_46267648_46267875_46268350_46268512_46268615_46268863_46268976_46269183_46271473_46271625_46271758_46271890_46272060_46272163_46272443_46272558_46272688_46272870_46273143_46273273_46274098
transcript_48018.known	chr19	+	2979	23	FSM	ENSMUSG00000025225.16	ENSMUST00000073116.13	2979	23	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_13	7.7085334275273	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCAACCCCAATGTGCTG	NA	False	NA	23	True	AATAAA	-28	NA	46293182	46300461	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_46293260_46294368_46294464_46294721_46294804_46294924_46294966_46295209_46295309_46295380_46295533_46295802_46295910_46295998_46296158_46296394_46296500_46296611_46296698_46296783_46296923_46297067_46297194_46297303_46297514_46297593_46297736_46298093_46298209_46298281_46298496_46298646_46298817_46298935_46299039_46299162_46299315_46299447_46299518_46299720_46299894_46300019_46300132_46300211
transcript_4802.known	chr1	-	4072	12	FSM	ENSMUSG00000026705.17	ENSMUST00000111611.8	4072	12	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_3	12.7525722571391	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTGGATTTTTT	NA	False	NA	3	True	AATAAA	-37	NA	160959081	160915944	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_160918082_160921250_160921358_160923098_160923308_160925832_160925967_160926711_160926856_160929020_160929205_160930548_160930665_160932970_160933066_160934276_160934436_160936791_160937366_160957958_160958023_160958932
transcript_48020.known	chr19	+	3141	22	FSM	ENSMUSG00000025225.16	ENSMUST00000111881.4	3141	22	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_12	7.7415743094745	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCCAATGTGCTGCCCAT	NA	False	NA	28	True	AATAAA	-33	NA	46294134	46300466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_46294464_46294721_46294804_46294924_46294966_46295209_46295309_46295380_46295533_46295802_46295910_46295998_46296158_46296394_46296500_46296611_46296698_46296783_46296923_46297067_46297194_46297303_46297514_46297593_46297736_46298093_46298209_46298281_46298496_46298646_46298817_46298935_46299039_46299162_46299315_46299447_46299518_46299720_46299894_46300019_46300132_46300211
transcript_48023.known	chr19	-	1764	2	FSM	ENSMUSG00000118087.2	ENSMUST00000235942.2	1764	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCTGAAAATGACATTTCG	NA	False	NA	NA	False	AATAAA	-17	NA	46294050	46292029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_46293290_46293546
transcript_48043.nnic	chr19	-	1321	10	NIC	ENSMUSG00000036748.17	novel	1941	10	NA	NA	-21	0	combination_of_known_splicesites	FALSE	canonical	3	123	junction_9	336.420298561116	973	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATATGCTCATTCTGCTC	5759	False	NA	-6	True	AGTAAA	-15	NA	46327162	46318982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326860_46326958
transcript_4805.known	chr1	-	4182	8	FSM	ENSMUSG00000026705.17	ENSMUST00000148952.8	4182	8	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_4	11.5387545750335	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAGAACAAAACATG	NA	False	NA	NA	False	NA	NA	NA	160959081	160924014	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_160926856_160929020_160929205_160930548_160930665_160932970_160933066_160934276_160934436_160936791_160937366_160957958_160958023_160958932
transcript_48060.known	chr19	+	1243	5	FSM	ENSMUSG00000025226.12	ENSMUST00000177667.2	1243	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.8004237212059	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCGTGGTGCATAGGGGA	6316	False	NA	8	True	AATAAA	-17	NA	46316625	46318884	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_46316741_46316841_46316966_46317113_46317268_46317526_46318033_46318540
transcript_48065.known	chr19	+	1348	4	FSM	ENSMUSG00000025226.12	ENSMUST00000026256.9	1348	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	4.08248290463863	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCGTGGTGCATAGGGGAC	6313	False	NA	9	True	AATAAA	-18	NA	46316622	46318885	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_46316966_46317113_46317268_46317526_46318033_46318540
transcript_48069.known	chr19	-	999	9	FSM	ENSMUSG00000036748.17	ENSMUST00000236980.2	999	9	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_8	339.490035752156	1088	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	-2	True	NA	-8	True	AGTAAA	-13	NA	46327056	46318984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321138_46327007
transcript_48070.known	chr19	-	1050	9	FSM	ENSMUSG00000036748.17	ENSMUST00000235977.2	1050	9	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_5	355.205486303351	780	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCATTCTGCTCATTT	5844	False	NA	-2	True	AGTAAA	-19	NA	46327077	46318978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320080_46320195_46320258_46320351_46320496_46321056_46321141_46327007
transcript_48071.known	chr19	-	1164	10	FSM	ENSMUSG00000036748.17	ENSMUST00000236061.2	1164	10	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_9	336.647010794011	963	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATATGCTCATTCTGCTC	5858	False	NA	-6	True	AGTAAA	-15	NA	46327063	46318982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326851_46327007
transcript_48072.known	chr19	-	310	3	FSM	ENSMUSG00000036748.17	ENSMUST00000236651.2	310	3	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_2	163	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGTAAGGGACAGGCCAGG	5852	False	NA	NA	False	NA	NA	NA	46327069	46321059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_46321141_46326751_46326870_46326958
transcript_48073.nnic	chr19	+	2456	10	NNC	ENSMUSG00000025227.15	novel	2278	9	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	82.6896622735489	276	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCTTTGGGTCTGTGCCG	4211	False	NA	13	True	AGTAAA	-13	NA	46345331	46363691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_46345424_46350784_46350976_46354749_46354993_46355648_46355732_46356147_46356601_46356704_46356829_46357675_46357773_46360374_46360547_46360620_46360815_46362884
transcript_48077.known	chr19	+	2278	9	FSM	ENSMUSG00000025227.15	ENSMUST00000086969.13	2278	9	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_1	30.2561977122044	374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCTTTGGGTCTGTGCCG	4198	False	NA	13	True	AGTAAA	-13	NA	46345318	46363691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_46345424_46354749_46354993_46355648_46355732_46356147_46356601_46356704_46356829_46357675_46357773_46360374_46360547_46360620_46360815_46362884
transcript_48078.known	chr19	+	2051	8	FSM	ENSMUSG00000025227.15	ENSMUST00000142994.8	2051	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_6	80.873294701764	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCTTTGGGTCTGTGCCG	4253	False	NA	13	True	AGTAAA	-13	NA	46345373	46363691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_46345424_46354749_46354993_46355648_46355732_46356147_46356601_46356704_46356829_46357675_46357773_46360620_46360815_46362884
transcript_48080.known	chr19	-	2757	11	FSM	ENSMUSG00000025228.6	ENSMUST00000040270.6	2757	11	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_3	19.222122671547	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTCTGACCTCTTTCTGT	NA	False	NA	-2	True	AATAAA	-19	NA	46384186	46365249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_46366909_46367046_46367088_46367851_46367914_46368020_46368196_46368687_46368781_46369355_46369573_46370732_46370858_46372658_46372785_46373451_46373528_46375890_46375956_46384068
transcript_48084.known	chr19	-	1076	5	FSM	ENSMUSG00000025228.6	ENSMUST00000236117.2	1076	5	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_3	19.765816451642	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGCCCCCAGCACCTTCCC	NA	False	NA	NA	False	NA	NA	NA	46384187	46370167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_46370858_46372658_46372785_46373451_46373528_46375890_46375956_46384068
transcript_48086.known	chr19	+	1747	12	FSM	ENSMUSG00000025231.18	ENSMUST00000111867.9	1747	12	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_6	20.0218888484042	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGATGACTGCAGAGTGCCA	NA	False	NA	NA	False	AATAAA	-13	NA	46385356	46474487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_46385724_46389562_46389698_46413437_46413575_46438267_46438411_46439017_46439104_46439329_46439403_46441597_46441755_46443173_46443286_46462010_46462146_46463946_46464086_46472038_46472108_46474293
transcript_48087.known	chr19	+	4522	12	FSM	ENSMUSG00000025231.18	ENSMUST00000039922.13	4522	12	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_6	14.4473967456865	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTGTGTGCTTCTTTCT	NA	False	NA	19	True	ATTAAA	-19	NA	46385334	46477243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_46385724_46389562_46389698_46413437_46413575_46438267_46438411_46439017_46439104_46439329_46439403_46441600_46441755_46443173_46443286_46462010_46462146_46463946_46464086_46472038_46472108_46474293
transcript_48090.nic	chr19	+	1856	7	ISM	ENSMUSG00000025231.18	ENSMUST00000111867.9	1747	12	-30	32005	-8	0	5prime_fragment	FALSE	canonical	3	32	junction_6	24.709422404329	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGACTTGGTTTACTTT	NA	False	NA	NA	False	AATAAA	-23	NA	46385326	46442482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_+_46385724_46389562_46389698_46413437_46413575_46438267_46438411_46439017_46439104_46439329_46439403_46441597
transcript_48093.known	chr19	+	2681	10	FSM	ENSMUSG00000025231.18	ENSMUST00000118440.3	2681	10	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_6	13.1101694577102	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTCGTCTGTGTGGTGTT	NA	False	NA	NA	False	TATAAA	-32	NA	46385464	46465393	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_46385724_46389562_46389698_46413437_46413575_46438267_46438411_46439017_46439104_46439329_46439403_46441600_46441755_46443173_46443286_46462010_46462146_46463946
transcript_48094.known	chr19	+	3580	6	FSM	ENSMUSG00000025034.10	ENSMUST00000026008.9	3580	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	429.31275312993	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTGGCCCAATGGGACAC	NA	False	NA	NA	False	AATAAA	-21	NA	46490140	46505287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_46491453_46501161_46501258_46501546_46501781_46502891_46502924_46503060_46503177_46503497
transcript_48100.known	chr19	-	843	6	FSM	ENSMUSG00000025035.10	ENSMUST00000026009.10	843	6	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_1	35.3870032639103	2100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATTAAATGTCTCAGAGCA	NA	False	NA	-21	True	AATAAA	-35	NA	46561532	46519534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_46519826_46530790_46530977_46531920_46531972_46540011_46540129_46546676_46546821_46561478
transcript_48108.known	chr19	-	1104	2	FSM	ENSMUSG00000025035.10	ENSMUST00000235489.2	1104	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGCCTTGGTCATGGTAT	NA	False	NA	NA	False	NA	NA	NA	46561515	46556344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_46557412_46561478
transcript_48109.known	chr19	-	1005	7	FSM	ENSMUSG00000025035.10	ENSMUST00000236255.2	1005	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	150.40020685565	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGTTGAAATAGTATTAAAT	NA	False	NA	-32	True	AATAAA	-24	NA	46561637	46519545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_46519826_46529881_46529950_46530790_46530977_46531920_46531972_46540011_46540129_46546676_46546821_46561478
transcript_48111.nic	chr19	+	1433	13	NIC	ENSMUSG00000025036.8	novel	3205	12	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_12	13.4440713906002	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACTGTCTGCAAACTAA	NA	False	NA	18	True	AATAAA	-18	NA	46561781	46585337	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_+_46561899_46570922_46571103_46571245_46571417_46574143_46574243_46576373_46576450_46576662_46576749_46578579_46578641_46578922_46578990_46579559_46579610_46579931_46579982_46580738_46580787_46583110_46583308_46585106
transcript_48113.known	chr19	+	3205	12	FSM	ENSMUSG00000025036.8	ENSMUST00000026011.8	3205	12	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_10	6.85384611817119	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAACACTGTCTGCAAAC	NA	False	NA	15	True	AATAAA	-15	NA	46561805	46585334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_46561899_46570922_46571103_46571245_46571417_46574143_46574243_46576373_46576450_46576662_46576749_46578579_46578641_46578922_46578990_46579559_46579610_46579931_46579982_46580738_46580787_46583110
transcript_48116.nic	chr19	+	1350	11	ISM	ENSMUSG00000025036.8	ENSMUST00000026011.8	3205	12	-24	4203	-22	2142	5prime_fragment	FALSE	canonical	3	36	junction_10	6.8622153857191	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGCTCATGCTCTGGTC	NA	False	NA	NA	False	TTTAAA	-27	NA	46561781	46581131	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_+_46561899_46570922_46571103_46571245_46571417_46574143_46574243_46576373_46576450_46576662_46576749_46578579_46578641_46578922_46578990_46579559_46579610_46579931_46579982_46580738
transcript_4812.known	chr1	+	3714	7	FSM	ENSMUSG00000044835.16	ENSMUST00000111608.8	3714	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	35.5547308932143	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTATGTTACACGTTTT	NA	False	NA	6	True	NA	NA	NA	160970281	160998068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_160970411_160978534_160978888_160982815_160982984_160988236_160988332_160990836_160990976_160991741_160991785_160995281
transcript_48125.known	chr19	+	3911	5	FSM	ENSMUSG00000047731.18	ENSMUST00000099376.11	3911	5	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	18.7666592658363	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACAATCTCCTGCCGCTC	NA	False	NA	17	True	AATAAA	-18	NA	46587552	46645821	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_46587733_46595150_46595199_46632791_46632895_46640912_46641075_46642403
transcript_48133.known	chr19	+	3900	4	FSM	ENSMUSG00000047731.18	ENSMUST00000138302.9	3900	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	42.0898509804389	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTGCCGCTCCTTGTTC	NA	False	NA	24	True	AATAAA	-25	NA	46587522	46645828	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_46587733_46632791_46632895_46640912_46641075_46642403
transcript_48140.known	chr19	+	2176	5	FSM	ENSMUSG00000062376.8	ENSMUST00000074912.8	2176	5	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_1	5.33853912601566	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTTAGACCAATCATTT	9071	False	NA	NA	False	AATAAA	-18	NA	46678344	46691821	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_46678525_46687994_46688058_46688176_46688221_46689213_46689235_46689953
transcript_48148.nnic	chr19	+	813	5	NNC	ENSMUSG00000062376.8	novel	2176	5	NA	NA	8	-1473	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	74.0553002829642	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTACCTCAGCTTGTTAAAA	9079	False	NA	NA	False	AATAAA	-32	NA	46678352	46690348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_46678643_46687994_46688058_46688176_46688221_46689213_46689235_46689953
transcript_4816.nnic	chr1	+	1014	6	NIC	ENSMUSG00000044835.16	novel	3714	7	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	45.5438250479689	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTCGTTCCTGCCAAGTT	NA	False	NA	NA	False	ATTAAA	-14	NA	160970279	160995409	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_160970411_160978534_160978888_160982815_160982984_160988236_160988332_160990836_160990976_160995281
transcript_48160.known	chr19	+	1736	11	FSM	ENSMUSG00000003559.9	ENSMUST00000003655.9	1736	11	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_6	16.3612346722367	808	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGGATGTCTGTAGTTT	5974	False	NA	30	True	AATAAA	-40	NA	46695896	46729534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_46695976_46696194_46696239_46696508_46696637_46697406_46697558_46697985_46698123_46700659_46700730_46703627_46703710_46708327_46708460_46708752_46708896_46713342_46713478_46728899
transcript_48171.nic	chr19	+	614	5	ISM	ENSMUSG00000003559.9	ENSMUST00000003655.9	1736	11	-30	31367	-30	-517	5prime_fragment	FALSE	canonical	3	174	junction_4	14.0801278403287	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCATGTATATGTTACTAC	5944	False	NA	NA	False	AGTAAA	-15	NA	46695866	46698167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_+_46695976_46696194_46696239_46696508_46696637_46697406_46697558_46697985
transcript_48173.known	chr19	+	1659	10	FSM	ENSMUSG00000003559.9	ENSMUST00000236063.2	1659	10	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	56.2713882519569	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAACAAATAAAAA	6191	False	NA	-27	True	NA	NA	NA	46696113	46729477	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_46696239_46696508_46696637_46697406_46697558_46697985_46698101_46700659_46700730_46703627_46703710_46708327_46708460_46708752_46708896_46713342_46713478_46728899
transcript_48174.known	chr19	+	1719	9	FSM	ENSMUSG00000003559.9	ENSMUST00000237219.2	1719	9	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_4	13.865424623862	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTCTGTAGTTTGTCT	6484	False	NA	34	True	AATAAA	-44	NA	46696406	46729538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_46696637_46697406_46697558_46697985_46698123_46700659_46700730_46703627_46703710_46708327_46708460_46708752_46708896_46713342_46713478_46728899
transcript_48179.known	chr19	+	4955	8	FSM	ENSMUSG00000064105.14	ENSMUST00000099373.12	4955	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	39.1240830889495	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGAGATGAAGGACTTGAG	NA	False	NA	NA	False	NA	NA	NA	46750034	46868631	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_46751833_46842339_46842484_46845274_46845413_46847381_46847552_46856976_46857071_46860094_46860161_46865646_46865832_46866271
transcript_48183.known	chr19	+	3240	3	FSM	ENSMUSG00000034336.4	ENSMUST00000037636.4	3240	3	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_2	0.5	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGACTCGTGCTCTGTGGT	NA	False	NA	12	True	ATTAAA	-15	NA	47003136	47013766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_47004259_47010271_47010397_47011773
transcript_48189.known	chr19	-	362	4	FSM	ENSMUSG00000071528.5	ENSMUST00000096014.5	362	4	0	0	0	0	multi-exon	FALSE	canonical	3	3669	junction_3	1157.30270696804	55295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGCTGGTTGTCTTTATT	NA	False	NA	-4	True	AATAAA	-13	NA	47079082	47071906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_47072009_47074393_47074487_47074572_47074669_47079011
transcript_4820.nic	chr1	+	533	4	ISM	ENSMUSG00000044835.16	ENSMUST00000192384.6	523	5	17816	0	17772	0	3prime_fragment	FALSE	canonical	3	77	junction_2	12.657891697365	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTCGTTCCTGCCAAGTT	608	False	NA	NA	False	ATTAAA	-14	NA	160988108	160995409	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_160988332_160990836_160990976_160991741_160991785_160995281
transcript_48200.known	chr19	-	425	5	FSM	ENSMUSG00000071528.5	ENSMUST00000237720.2	425	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2533.27548590752	5242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAATTATGAACCTGGAA	NA	False	NA	-22	True	NA	NA	NA	47079073	47071924	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_47072009_47073207_47073298_47074393_47074487_47074572_47074669_47079011
transcript_48201.known	chr19	-	352	3	FSM	ENSMUSG00000071528.5	ENSMUST00000236170.2	352	3	0	0	0	0	multi-exon	FALSE	canonical	3	3669	junction_2	1312	591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTCATTGTATACACGA	NA	False	NA	NA	False	AATAAA	-16	NA	47079086	47074305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_47074487_47074572_47074669_47079011
transcript_48205.nic	chr19	+	321	3	ISM	ENSMUSG00000025047.10	ENSMUST00000072141.4	6761	36	-36	38049	-36	-34665	5prime_fragment	FALSE	canonical	3	191	junction_2	3.5	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTGAAAATTGAAAAGAGAAA	NA	False	NA	NA	False	ATTAAA	-40	NA	47079170	47082255	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_+_47079307_47081220_47081340_47082189
transcript_48207.known	chr19	-	2458	3	FSM	ENSMUSG00000033033.11	ENSMUST00000035822.2	2458	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	1	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAAACAAAACAA	5329	False	NA	NA	False	NA	NA	NA	47126733	47120261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_47121613_47123787_47124505_47126343
transcript_48209.known	chr19	+	6761	36	FSM	ENSMUSG00000025047.10	ENSMUST00000072141.4	6761	36	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_7	35.2497097976186	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGTTCTCTTTAAGTT	NA	False	NA	NA	False	ATTAAA	-20	NA	47079206	47120304	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_47079307_47081220_47081340_47082189_47082322_47083646_47083815_47085293_47085456_47086559_47086684_47087129_47087312_47089501_47089610_47091005_47091213_47092190_47092316_47092471_47092533_47093094_47093242_47094735_47094988_47095449_47095591_47095992_47096188_47096861_47097033_47097992_47098213_47099399_47099550_47100476_47100593_47101579_47102155_47102993_47103057_47105735_47105842_47107974_47108065_47108231_47108335_47108685_47108864_47112869_47112927_47113483_47113607_47114744_47114868_47115313_47115549_47115689_47115807_47116384_47116532_47116713_47116962_47117580_47117750_47118067_47118222_47118386_47118553_47119077
transcript_48210.known	chr19	+	1060	4	FSM	ENSMUSG00000006435.17	ENSMUST00000235290.2	1060	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	19.5675468285856	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTGTTTGTTTTTGTT	NA	False	NA	NA	False	TATAAA	-14	NA	47167589	47229835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_47167991_47228240_47228483_47228788_47229111_47229740
transcript_48211.nnic	chr19	+	915	3	NIC	ENSMUSG00000006435.17	novel	4158	6	NA	NA	11372	-1640	combination_of_known_splicesites	FALSE	canonical	1	3	junction_1	55.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCCTGGAGGATTGGGCT	NA	False	NA	NA	False	ATTAAA	-14	NA	47228721	47246234	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_+_47229111_47245150_47245298_47245855
transcript_48212.nic	chr19	+	956	3	ISM	ENSMUSG00000006435.17	ENSMUST00000111807.5	3606	6	24468	1640	24468	-1640	3prime_fragment	FALSE	canonical	3	77	junction_1	18.5	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCCTGGAGGATTGGGCT	1481	False	NA	NA	False	ATTAAA	-14	NA	47241817	47246234	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_+_47242248_47245150_47245298_47245855
transcript_48213.nic	chr19	+	2538	3	ISM	ENSMUSG00000006435.17	ENSMUST00000111807.5	3606	6	24526	0	24526	0	3prime_fragment	FALSE	canonical	3	77	junction_1	18.5	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGAGGGCTGTGCTGTGC	1539	False	NA	34	True	AATAAA	-16	NA	47241875	47247874	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_+_47242248_47245150_47245298_47245855
transcript_48218.known	chr19	-	1992	10	FSM	ENSMUSG00000042694.18	ENSMUST00000049369.16	1992	10	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_2	7.26907877057606	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCATTTCCTTATGACTT	NA	False	NA	-10	True	AATAAA	-27	NA	47525558	47489471	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_47490157_47496244_47496318_47498773_47498897_47502249_47502422_47504529_47504654_47505465_47505634_47513125_47513195_47517075_47517172_47524634_47524811_47525252
transcript_48219.nnic	chr19	-	1889	10	NNC	ENSMUSG00000042694.18	novel	1992	10	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_9	40.2090217749545	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCAATTCATTTCCTTAT	NA	False	NA	-15	True	AATAAA	-22	NA	47525569	47489476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_47490157_47496244_47496318_47498773_47498897_47502249_47502422_47504529_47504654_47505465_47505634_47513125_47513195_47517075_47517172_47524634_47524811_47525361
transcript_48220.nic	chr19	-	1840	10	NIC	ENSMUSG00000042694.18	novel	1992	10	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_9	41.1369288301916	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCAATTCATTTCCTTAT	NA	False	NA	-15	True	AATAAA	-22	NA	47525572	47489476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_47490157_47496244_47496318_47498773_47498897_47502249_47502422_47504529_47504654_47505465_47505634_47513125_47513195_47517075_47517172_47524634_47524811_47525413
transcript_48231.known	chr19	-	558	5	FSM	ENSMUSG00000042694.18	ENSMUST00000182431.8	558	5	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_1	57.4429064376099	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGCAGGCCAGTCTCCACC	NA	False	NA	NA	False	NA	NA	NA	47525403	47510570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_47510637_47513125_47513195_47517075_47517172_47524634_47524811_47525252
transcript_48236.known	chr19	-	132	2	FSM	ENSMUSG00000042694.18	ENSMUST00000183283.2	132	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTCTTTTGGGGTCTGGA	NA	False	NA	NA	False	NA	NA	NA	47525463	47524728	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_47524811_47525413
transcript_48237.known	chr19	-	690	2	FSM	ENSMUSG00000042694.18	ENSMUST00000182714.2	690	2	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGCCTGGGCTACATAAGA	NA	False	NA	NA	False	NA	NA	NA	47525485	47524353	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_47524811_47525252
transcript_48239.known	chr19	+	7278	18	FSM	ENSMUSG00000025060.16	ENSMUST00000026043.12	7278	18	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_7	39.0368471130284	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGGGAATTTTCTTTTT	NA	False	NA	21	True	AATAAA	-17	NA	47568116	47633685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_47568783_47597343_47597509_47600013_47600063_47600340_47600491_47603634_47603708_47603844_47604040_47604960_47605043_47607629_47607759_47608041_47609392_47610674_47610806_47611009_47611134_47613743_47613924_47623907_47624038_47624781_47624907_47625648_47625838_47626080_47626207_47627314_47627429_47630385
transcript_4824.nnic	chr1	+	696	3	NNC	ENSMUSG00000044835.16	novel	849	6	NA	NA	4	-11826	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGGTCAAACTTACCTGA	NA	False	NA	NA	False	ATTAAA	-20	NA	160970285	160979039	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_160970411_160973617_160973684_160978534
transcript_48249.known	chr19	+	1657	4	FSM	ENSMUSG00000025066.11	ENSMUST00000099353.6	1657	4	0	0	0	0	multi-exon	FALSE	canonical	3	1732	junction_1	59.801523577767	2067	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTCATATCCTTATTTC	NA	False	NA	68	True	ACTAAA	-21	NA	47720120	47724027	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_47720261_47721068_47721428_47721957_47722351_47723262
transcript_48259.nnic	chr19	-	968	6	NNC	ENSMUSG00000044948.18	novel	1940	15	NA	NA	16337	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	4.58693797647189	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAGTACAGTTACCTGTCC	NA	False	NA	NA	False	NA	NA	NA	47735682	47726044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_47726327_47726467_47726622_47727216_47727298_47728108_47728274_47735067_47735181_47735509
transcript_48260.nnic	chr19	-	862	6	NNC	ENSMUSG00000044948.18	novel	1940	15	NA	NA	16354	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	4.31740662898458	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAGTACAGTTACCTGTCC	NA	False	NA	NA	False	NA	NA	NA	47735665	47726044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_47726327_47726467_47726622_47727216_47727298_47728108_47728274_47735067_47735181_47735598
transcript_48262.known	chr19	-	892	5	FSM	ENSMUSG00000044948.18	ENSMUST00000159204.2	892	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.4790199457749	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGACCATTCTGCTCTTTAC	NA	False	NA	NA	False	NA	NA	NA	47825800	47811392	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_47811619_47814200_47814369_47818822_47818920_47824002_47824257_47825653
transcript_48264.known	chr19	+	1182	6	FSM	ENSMUSG00000025068.9	ENSMUST00000026050.8	1182	6	0	0	0	0	multi-exon	FALSE	canonical	3	277	junction_4	32.103582354622	2277	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGTCCAAACCACCTCAG	8468	False	NA	21	True	ATTAAA	-30	NA	47843408	47853229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_47843562_47843653_47843763_47846297_47846521_47847870_47847970_47851817_47851922_47852735
transcript_48265.known	chr19	+	1351	9	FSM	ENSMUSG00000025069.16	ENSMUST00000056159.11	1351	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	0.992156741649222	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGACTCCTGAAGCCTGTA	96	False	NA	NA	False	AATAAA	-36	NA	47854205	47874763	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_47854369_47858124_47858200_47858647_47858763_47860092_47860243_47860454_47860564_47863268_47863492_47864834_47864937_47873094_47873202_47874456
transcript_48266.known	chr19	+	685	3	FSM	ENSMUSG00000025069.16	ENSMUST00000236449.2	685	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTTAGATTCAAAAATGAAG	117	False	NA	NA	False	AGTAAA	-12	NA	47854226	47859115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_47854369_47858124_47858200_47858647
transcript_48267.known	chr19	-	612	1	FSM	ENSMUSG00000062083.2	ENSMUST00000071866.2	612	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	335	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCAATAAAGACTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	50019174	50018562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_50018600_50019200
transcript_48271.nic	chr19	-	2441	20	NIC	ENSMUSG00000025027.19	novel	4078	21	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	690	junction_19	186.942819408855	738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGCTTTGTCTGCCTC	5034	False	NA	-3	True	AATAAA	-14	NA	53027097	52979613	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53003041_53003106_53013689_53013815_53026944
transcript_48278.known	chr19	-	1422	11	FSM	ENSMUSG00000025027.19	ENSMUST00000238001.2	1422	11	0	0	0	0	multi-exon	FALSE	canonical	3	1197	junction_9	123.396758466339	583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCTTTGTCTGCCTCTTT	NA	False	NA	0	True	AATAAA	-17	NA	52993335	52979610	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194
transcript_4829.nnic	chr1	+	531	2	NNC	ENSMUSG00000044835.16	novel	849	6	NA	NA	-2	-11832	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCATCAAGGTCAAACTT	NA	False	NA	NA	False	ATTAAA	-14	NA	160970290	160979033	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_160970411_160978622
transcript_48291.nnic	chr19	+	553	3	Intergenic	novelGene_70	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGACTCTTCCCGTCGCAG	305	False	NA	NA	False	NA	NA	NA	53039150	53052912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr19_+_53039431_53050500_53050648_53052786
transcript_48295.nnic	chr19	-	2288	3	Antisense	novelGene_ENSMUSG00000099988.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	6	junction_2	1.5	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGAGTCTCTTGGTTTGAT	5177	False	NA	NA	False	AATAAA	-21	NA	53052912	53038324	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr19_-_53040340_53050500_53050648_53052786
transcript_48299.nnic	chr19	-	1453	3	Antisense	novelGene_ENSMUSG00000099988.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	6	junction_2	1.5	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTTTTTTAAGAGTTTT	5177	False	NA	NA	False	AATAAA	-16	NA	53052912	53039159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr19_-_53040340_53050500_53050648_53052786
transcript_48301.nnic	chr19	-	1487	3	Antisense	novelGene_ENSMUSG00000099988.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	8	junction_2	0.5	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTTTTTTAAGAGTTTT	5091	False	NA	NA	False	AATAAA	-16	NA	53052998	53039159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr19_-_53040340_53050500_53050648_53052838
transcript_48306.known	chr19	+	4054	15	FSM	ENSMUSG00000025026.16	ENSMUST00000237430.2	4054	15	0	0	0	0	multi-exon	TRUE	canonical	3	178	junction_5	22.1124214791929	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTTGGTATAATGGGGT	151	False	NA	8	True	AATAAA	-17	NA	53131404	53235518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_53131521_53205231_53205447_53215021_53215161_53219610_53219763_53220554_53220636_53221456_53221607_53222003_53222148_53222255_53222355_53223209_53223393_53225024_53225283_53226833_53226954_53227837_53227925_53230934_53231059_53232740_53232837_53233428
transcript_4831.known	chr1	+	523	5	FSM	ENSMUSG00000044835.16	ENSMUST00000192384.6	523	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	39.789288759665	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTCGTTCCTGCCAAGTT	NA	False	NA	NA	False	ATTAAA	-14	NA	160970292	160995409	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_160970411_160988236_160988332_160990836_160990976_160991741_160991785_160995281
transcript_48310.known	chr19	+	2627	6	FSM	ENSMUSG00000025025.15	ENSMUST00000003870.15	2627	6	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	71.8843515655528	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGAGTTGTGTGTTAATGT	NA	False	NA	18	True	AATAAA	-23	NA	53298948	53361724	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_53299405_53319781_53319915_53334881_53334912_53357972_53358088_53358620_53358793_53360003
transcript_48311.known	chr19	+	2340	6	FSM	ENSMUSG00000025025.15	ENSMUST00000111737.3	2340	6	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	29.7859027058103	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGCTTTATGAT	4414	False	NA	NA	False	TTTAAA	-25	NA	53317843	53361585	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_53318152_53319781_53319915_53334881_53334912_53357972_53358088_53358620_53358793_53360003
transcript_48312.known	chr19	+	939	3	FSM	ENSMUSG00000025025.15	ENSMUST00000237837.2	939	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	76	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTGTATTTATTGGTGA	4462	False	NA	NA	False	TATAAA	-18	NA	53317891	53320992	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_53318152_53319781_53319915_53320446
transcript_48323.known	chr19	-	1478	6	FSM	ENSMUSG00000025024.8	ENSMUST00000236962.2	1478	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	83.1903840596977	591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTAGGATGTGCGCCCCT	NA	False	NA	-8	True	ATTAAA	-16	NA	53379005	53368309	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_53369033_53369671_53369826_53371987_53372167_53372884_53373028_53377733_53377854_53378846
transcript_4833.known	chr1	+	2692	21	FSM	ENSMUSG00000102817.3	ENSMUST00000212885.2	2692	21	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGCTCAGAATCCGTTA	NA	False	NA	NA	False	AATAAA	-23	NA	161028378	161064877	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_161028526_161030710_161030880_161032910_161032993_161033724_161033889_161035179_161035288_161036041_161036140_161037229_161037350_161039568_161039768_161040612_161040802_161044309_161044460_161048146_161048199_161050506_161050656_161051516_161051643_161052154_161052248_161055427_161055596_161056995_161057128_161060021_161060208_161061122_161061208_161062687_161062744_161064276_161064340_161064721
transcript_48335.nic	chr19	-	736	4	ISM	ENSMUSG00000025024.8	ENSMUST00000025997.7	1948	6	-148	4161	-148	910	5prime_fragment	FALSE	canonical	3	184	junction_2	11.8133634311129	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTGACGCTTCCCAGAC	NA	False	NA	2	True	NA	NA	NA	53379157	53371987	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_-_53372150_53372884_53373028_53377733_53377854_53378846
transcript_48338.nic	chr19	-	905	3	ISM	ENSMUSG00000025024.8	ENSMUST00000236962.2	1478	6	-60	4152	-56	436	5prime_fragment	FALSE	canonical	3	184	junction_1	12	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGTGAATTGCTGAC	NA	False	NA	NA	False	NA	NA	NA	53379065	53372461	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_-_53373028_53377733_53377854_53378846
transcript_48339.known	chr19	-	1480	6	FSM	ENSMUSG00000025024.8	ENSMUST00000237529.2	1480	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	90.567985513646	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTAGGATGTGCGCCCC	NA	False	NA	-9	True	ATTAAA	-15	NA	53378472	53368310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_53369033_53369671_53369826_53371987_53372150_53372884_53373028_53377733_53377854_53378293
transcript_48340.known	chr19	-	1992	6	FSM	ENSMUSG00000025024.8	ENSMUST00000235830.2	1992	6	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_5	113.82794033101	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTTAACAAAGGGGCGG	NA	False	NA	-2	True	AATAAA	-23	NA	53377853	53367820	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_53369033_53369671_53369826_53371987_53372167_53372884_53373028_53374803_53374988_53377733
transcript_48350.nnic	chr19	-	655	4	NIC	ENSMUSG00000097636.9	novel	3261	10	NA	NA	2086	-1077	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	0.942809041582063	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGTTTTAGTTTATTGTC	3639	False	NA	NA	False	ATTAAA	-31	NA	53437836	53433521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_53433776_53435206_53435319_53435586_53435745_53437705
transcript_48355.nnic	chr19	+	1216	2	NNC	ENSMUSG00000097779.3	novel	1494	2	NA	NA	-2	8	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGACTCAGCTCTGTTT	NA	False	NA	NA	False	AATAAA	-39	NA	53449050	53451162	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_53449251_53450146
transcript_48356.known	chr19	+	1494	2	FSM	ENSMUSG00000097779.3	ENSMUST00000180442.3	1494	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACTGTACTTAAGACTCAG	NA	False	NA	NA	False	AATAAA	-31	NA	53449052	53451154	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_53449539_53450146
transcript_48358.known	chr19	-	901	1	FSM	ENSMUSG00000071497.5	ENSMUST00000095978.5	901	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5518	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	53577499	53576598	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_53576600_53577500
transcript_48359.known	chr19	+	4851	29	FSM	ENSMUSG00000024974.11	ENSMUST00000025930.10	4851	29	0	0	0	0	multi-exon	FALSE	non_canonical	3	891	junction_13	92.0610586535271	949	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGTGTGTAATTCATCA	NA	False	NA	NA	False	CATAAA	-14	NA	53588828	53634264	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_53588986_53589913_53589990_53602245_53602285_53603536_53603605_53606499_53606572_53606897_53606978_53607201_53607281_53609019_53609138_53610161_53610338_53611034_53611116_53611482_53611648_53611897_53612020_53613379_53613594_53616281_53616386_53616483_53616584_53617097_53617259_53617674_53617817_53619917_53620069_53622389_53622543_53624101_53624254_53624811_53624971_53627128_53627237_53627757_53627867_53629192_53629441_53629528_53629742_53629955_53630148_53630291_53630470_53632274_53632382_53633137
transcript_48370.known	chr19	+	1733	13	FSM	ENSMUSG00000024975.14	ENSMUST00000165617.3	1733	13	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_12	33.2949779329489	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTAGTGGGAGTGCATT	585	False	NA	15	True	AATAAA	-20	NA	53891846	53918284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_53891920_53895879_53895987_53897542_53897846_53899358_53899454_53901242_53901357_53908045_53908268_53909648_53909747_53910447_53910563_53914636_53914745_53914965_53915077_53915624_53915765_53917513_53917624_53918147
transcript_48371.known	chr19	+	2381	12	FSM	ENSMUSG00000024975.14	ENSMUST00000025931.14	2381	12	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_5	6.73954654285478	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGAGTGCATTTATTGTG	468	False	NA	22	True	AATAAA	-27	NA	53891729	53918291	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_53891920_53895879_53895987_53897542_53897846_53899358_53899454_53901242_53901357_53908045_53908268_53909648_53909747_53910447_53910563_53914636_53914745_53914965_53915077_53915624_53915765_53917513
transcript_48375.known	chr19	+	3664	9	FSM	ENSMUSG00000024976.15	ENSMUST00000169861.9	3664	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	127.929668177479	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGGATTTTTGCTTTTC	3358	False	NA	NA	False	ATTAAA	-20	NA	53932736	54021298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_53932834_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
transcript_48377.nnic	chr19	+	2230	9	NNC	ENSMUSG00000024976.15	novel	3965	9	NA	NA	-56	-1416	at_least_one_novel_splicesite	FALSE	canonical	3	220	junction_1	61.2775448267961	178	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTATATAAGTTTTCTTT	3869	False	NA	NA	False	AATAGA	-45	NA	53933247	54019882	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_53933327_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
transcript_48378.known	chr19	+	3965	9	FSM	ENSMUSG00000024976.15	ENSMUST00000025932.9	3965	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	123.021784148174	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCTTGTGTGTGTGGTGT	3932	False	NA	21	True	TATAAA	-24	NA	53933310	54021562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_53933445_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
transcript_4838.known	chr1	-	913	5	FSM	ENSMUSG00000026701.16	ENSMUST00000156678.8	913	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	765.536209137099	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAATGGCACCAAAACCTT	NA	False	NA	-20	True	ATTAAA	-2	NA	161078739	161069133	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826_161074984_161078563
transcript_48381.known	chr19	-	838	5	FSM	ENSMUSG00000084957.4	ENSMUST00000236885.2	838	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	83.9315197050548	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATGCTGACTGCTACGGA	NA	False	NA	NA	False	AATACA	-21	NA	53932611	53919390	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_53919934_53920560_53920637_53921921_53922002_53931896_53932011_53932586
transcript_48382.known	chr19	-	787	5	FSM	ENSMUSG00000084957.4	ENSMUST00000235348.2	787	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	83.3261663584735	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATGAATCTGAAAATAAACT	NA	False	NA	NA	False	ATTAAA	-34	NA	53932905	53919474	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_53919934_53920560_53920637_53921921_53922002_53931896_53932011_53932847
transcript_48390.known	chr19	-	662	4	FSM	ENSMUSG00000084957.4	ENSMUST00000236370.2	662	4	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_3	45.8427263102398	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACTGTTATGAATGTAAGA	NA	False	NA	NA	False	TATAAA	-31	NA	53932659	53919534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_53919934_53920560_53920637_53931896_53932011_53932586
transcript_48391.known	chr19	-	2043	4	FSM	ENSMUSG00000084957.4	ENSMUST00000135402.4	2043	4	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	53.0806514236172	657	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGAATCAACAGTGTTTC	NA	False	NA	NA	False	AATAAA	-12	NA	53933058	53918291	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_53919934_53920560_53920637_53931896_53932011_53932847
transcript_48399.known	chr19	-	613	3	FSM	ENSMUSG00000084957.4	ENSMUST00000235688.2	613	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	103	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGGGCTTGTACACTAC	NA	False	NA	NA	False	AATAAA	-17	NA	53932891	53919440	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_53919934_53920560_53920637_53932847
transcript_48402.known	chr19	-	986	1	FSM	ENSMUSG00000084957.4	ENSMUST00000236900.2	986	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAAAAAAAAGAACAA	NA	False	NA	NA	False	NA	NA	NA	53932909	53931923	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_53931900_53932900
transcript_48403.known	chr19	-	2120	4	FSM	ENSMUSG00000084957.4	ENSMUST00000237049.2	2120	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	83.0220854150669	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTGTTGGGCTTGTACA	NA	False	NA	NA	False	AATAAA	-13	NA	53932662	53919444	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_53919934_53920560_53922002_53931896_53932011_53932586
transcript_48407.known	chr19	+	4243	22	FSM	ENSMUSG00000024981.7	ENSMUST00000043150.6	4243	22	0	0	0	0	multi-exon	TRUE	canonical	3	56	junction_1	11.2473730871055	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGTGACTTGTCTCATCTG	NA	False	NA	NA	False	AATATA	-16	NA	55241800	55286152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_55242599_55257075_55257261_55261200_55261310_55266338_55266404_55266512_55266615_55267895_55267996_55268872_55269052_55269767_55269801_55269881_55269934_55270904_55270979_55271739_55271818_55272834_55272970_55276259_55276395_55277236_55277333_55279577_55279651_55279849_55279939_55280204_55280322_55282018_55282163_55282633_55282736_55283264_55283337_55283804_55283955_55284797
transcript_4841.known	chr1	-	1294	4	FSM	ENSMUSG00000026701.16	ENSMUST00000192639.6	1294	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	831.771736849854	603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAACCGTTGTCATGTTT	NA	False	NA	-11	True	AATAAA	-10	NA	161078756	161068584	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161078591
transcript_48411.nic	chr19	-	1716	11	ISM	ENSMUSG00000024982.11	ENSMUST00000225963.2	2647	18	-25	18261	-3	7360	5prime_fragment	FALSE	canonical	3	11	junction_1	160.521182402822	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGCCTTGGTCATGAT	7436	False	NA	NA	False	NA	NA	NA	55304467	55277983	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_-_55278117_55290989_55291037_55291122_55291269_55292128_55292171_55292841_55293010_55297335_55297390_55298174_55298337_55300056_55300217_55301620_55301713_55302732_55303205_55304227
transcript_48414.known	chr19	-	2263	11	FSM	ENSMUSG00000024982.11	ENSMUST00000076891.7	2263	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_10	157.939355450122	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTATAGTTTTCACCA	7441	False	NA	-26	True	AATAAA	-19	NA	55304462	55286751	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_55287321_55290989_55291037_55291122_55291269_55292128_55292171_55292841_55293010_55297335_55297390_55298174_55298337_55300056_55300217_55301620_55301713_55302732_55303205_55304111
transcript_48415.known	chr19	-	2168	11	FSM	ENSMUSG00000024982.11	ENSMUST00000224897.2	2168	11	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_6	59.8815497461447	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCATTGTTTTTAGTT	7439	False	NA	-7	True	AATAAA	-38	NA	55304464	55286732	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_55287321_55290989_55291037_55291122_55291269_55292128_55292171_55292841_55293010_55297335_55297390_55298174_55298337_55300056_55300217_55301620_55301713_55302732_55303205_55304227
transcript_48418.known	chr19	+	4175	9	FSM	ENSMUSG00000024983.11	ENSMUST00000223690.2	4175	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	45.0832563153994	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTGTTTATCGCTTTTT	NA	False	NA	14	True	ATTAAA	-18	NA	55304781	55615741	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_55304977_55310370_55310430_55316777_55316889_55369373_55369452_55375620_55375642_55380215_55380301_55486942_55487014_55487674_55487737_55612248
transcript_48419.nnic	chr19	+	1343	9	NNC	ENSMUSG00000024983.11	novel	1244	8	NA	NA	-15	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	47.4394350725217	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCTTTCTACTGTTACTG	NA	False	NA	NA	False	ATTAAA	-20	NA	55304711	55565439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_55304977_55310370_55310430_55316777_55316889_55369373_55369452_55380215_55380301_55486942_55487014_55487674_55487737_55564706_55564785_55564905
transcript_48421.known	chr19	+	3405	8	FSM	ENSMUSG00000024983.11	ENSMUST00000095950.3	3405	8	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_7	16.8219972606327	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGTTTTAAATGTTCCG	NA	False	NA	45	True	ATTAAA	-15	NA	55304782	55614993	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_55304977_55310370_55310430_55316777_55316889_55369373_55369452_55380215_55380301_55486942_55487014_55487674_55487737_55612248
transcript_48435.known	chr19	+	1599	4	FSM	ENSMUSG00000024983.11	ENSMUST00000226069.2	1599	4	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	51.1620519091597	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATATCATGCATCTTTTGT	NA	False	NA	NA	False	AATAAA	-19	NA	55304758	55355935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_55304977_55310370_55310430_55316777_55316889_55354724
transcript_48436.nic	chr19	+	554	3	ISM	ENSMUSG00000024983.11	ENSMUST00000225051.2	2919	4	-77	4063	-15	-4063	5prime_fragment	FALSE	canonical	3	111	junction_2	1.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGAGCAGCAGATCTT	NA	False	NA	NA	False	ATTAAA	-23	NA	55304711	55317007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_+_55304977_55310370_55310430_55316777
transcript_48437.known	chr19	+	1244	8	FSM	ENSMUSG00000024983.11	ENSMUST00000225529.2	1244	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	38.5687829780532	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCGGCCCCTTTCTACTG	NA	False	NA	NA	False	ATTAAA	-14	NA	55304726	55565433	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_55304977_55310370_55310430_55316777_55316889_55369373_55369452_55380215_55380301_55486942_55487014_55487674_55487737_55564905
transcript_4844.known	chr1	-	2558	1	FSM	ENSMUSG00000026701.16	ENSMUST00000194613.2	2558	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAACAAAAACAA	NA	False	NA	NA	False	ATTAAA	-30	NA	161078732	161076174	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_161076200_161078700
transcript_48440.known	chr19	+	2350	7	FSM	ENSMUSG00000025076.13	ENSMUST00000026062.10	2350	7	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	6.36177822799744	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGACTGGTCCGGTCTG	NA	False	NA	14	True	ATTAAA	-15	NA	56385560	56430776	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_56385750_56392847_56392958_56421673_56421811_56422233_56422363_56424658_56424835_56425150_56425281_56429297
transcript_48443.known	chr19	+	519	3	FSM	ENSMUSG00000025076.13	ENSMUST00000235386.2	519	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	10.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATACCAAGCTGCTCACAGA	NA	False	NA	NA	False	AATAGA	-33	NA	56385709	56397153	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_56385750_56392847_56392958_56396784
transcript_48444.known	chr19	+	1341	1	FSM	ENSMUSG00000025076.13	ENSMUST00000235178.3	1341	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	56385691	56387032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_56385700_56387000
transcript_48446.known	chr19	-	4066	10	FSM	ENSMUSG00000025077.15	ENSMUST00000182276.3	4087	10	21	0	21	0	multi-exon	FALSE	canonical	3	30	junction_9	50.5063252364383	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAGCATATTTGGATGGG	7995	False	NA	-10	True	AATAAA	-18	NA	56536654	56517600	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_56518095_56519648_56519791_56525559_56525715_56526728_56526875_56528613_56528755_56529936_56530056_56531064_56531199_56532446_56534079_56535068_56536136_56536618
transcript_48447.known	chr19	-	899	2	ISM	ENSMUSG00000025077.15	ENSMUST00000182059.3	4109	10	26	17689	26	-6847	5prime_fragment	FALSE	canonical	3	276	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTCGAGCTGTAGAGATG	8191	False	NA	NA	False	NA	NA	NA	56536458	56535289	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_-_56536136_56536405
transcript_4845.known	chr1	-	2387	5	FSM	ENSMUSG00000026701.16	ENSMUST00000071718.12	2387	5	0	0	0	0	multi-exon	FALSE	canonical	3	1689	junction_3	62.8823305865805	6017	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAATGTGAGTCTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	161078789	161067681	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826_161074984_161078591
transcript_48457.known	chr19	-	6445	16	FSM	ENSMUSG00000035173.15	ENSMUST00000118592.8	6445	16	0	0	0	0	multi-exon	TRUE	canonical	3	40	junction_2	9.58239125804317	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTCTGTTGATGGCGTCT	5197	False	NA	-1	True	ATTAAA	-22	NA	56810622	56775912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_56779479_56780372_56780593_56781727_56781939_56783521_56783603_56785875_56786066_56786998_56787255_56788495_56788639_56789344_56789432_56789598_56789698_56790316_56790422_56795397_56795518_56796409_56796623_56797624_56797754_56798670_56798798_56801426_56802122_56810419
transcript_48458.known	chr19	-	5927	17	FSM	ENSMUSG00000025085.17	ENSMUST00000111529.8	5927	17	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	24.9621588609639	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTGCTGAGCACCTGGTA	NA	False	NA	NA	False	NA	NA	NA	57107441	57021321	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_57025770_57027838_57027920_57028918_57028994_57029846_57029855_57030346_57030408_57031428_57031494_57032227_57032331_57033312_57033405_57035356_57035498_57037893_57037942_57049684_57049815_57052197_57052234_57056522_57056679_57057291_57057370_57068244_57068304_57071947_57072036_57107183
transcript_4846.known	chr1	-	959	6	FSM	ENSMUSG00000026701.16	ENSMUST00000051925.5	959	6	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_5	839.164012574419	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGATCGCTCGCTATACTA	NA	False	NA	-54	True	NA	NA	NA	161078736	161069167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826_161074984_161076928_161077040_161078591
transcript_48463.known	chr19	-	875	7	FSM	ENSMUSG00000025085.17	ENSMUST00000133369.2	875	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.98142396999972	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGAGAGGTCCGCCCATC	7800	False	NA	NA	False	NA	NA	NA	57170740	57119277	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_57119420_57121293_57121388_57123013_57123141_57140704_57140815_57143583_57143768_57161756_57161892_57170657
transcript_48465.known	chr19	+	3789	8	FSM	ENSMUSG00000025086.14	ENSMUST00000026073.14	3789	8	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_6	27.9131305507436	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGAGTTCTTTGCAGTAAG	NA	False	NA	18	True	AATAAA	-18	NA	57441343	57479437	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_57441629_57446521_57446621_57452801_57452858_57461130_57461213_57472012_57472086_57473504_57473645_57475696_57475754_57476440
transcript_48468.known	chr19	+	1564	7	FSM	ENSMUSG00000025086.14	ENSMUST00000026072.5	1564	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	76.8803182442251	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAGTTGTACAAGCCTAT	NA	False	NA	NA	False	AATAAA	-27	NA	57441365	57474634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_57441629_57446521_57446621_57452801_57452858_57461130_57461213_57472012_57472086_57473504_57473645_57473783
transcript_4847.known	chr1	-	798	3	FSM	ENSMUSG00000040323.14	ENSMUST00000151268.2	798	3	0	0	0	0	multi-exon	FALSE	non_canonical	3	106	junction_1	98.5	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAACATGGGGGGGCCCCT	NA	False	NA	NA	False	NA	NA	NA	161555058	161553810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_161553876_161554208_161554584_161554700
transcript_48471.nnic	chr19	+	763	5	NNC	ENSMUSG00000025086.14	novel	2513	6	NA	NA	-14	-9808	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_4	89.3602260516389	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTAGATGTTGGATTAT	NA	False	NA	NA	False	ATTAAA	-19	NA	57441329	57462250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_+_57441629_57446521_57446621_57452801_57452858_57461130_57461213_57462023
transcript_48472.nic	chr19	+	789	4	ISM	ENSMUSG00000025086.14	ENSMUST00000026072.5	1564	7	-36	13169	-14	-10593	5prime_fragment	FALSE	canonical	3	207	junction_2	6.16441400296898	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGCCCAGGCTCAGTACA	NA	False	NA	NA	False	ATTAAA	-18	NA	57441329	57461465	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_+_57441629_57446521_57446621_57452801_57452858_57461130
transcript_48474.nic	chr19	+	1071	4	ISM	ENSMUSG00000025086.14	ENSMUST00000026072.5	1564	7	-36	12887	-14	-10311	5prime_fragment	FALSE	canonical	3	207	junction_2	6.16441400296898	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAAAGTCGTCACGTGCC	NA	False	NA	NA	False	AGTAAA	-18	NA	57441329	57461747	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_+_57441629_57446521_57446621_57452801_57452858_57461130
transcript_48475.known	chr19	+	603	4	FSM	ENSMUSG00000117655.2	ENSMUST00000234049.2	603	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTAAGACTTACTTCATC	8597	False	NA	NA	False	NA	NA	NA	57486195	57500449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_57486248_57497579_57497668_57498530_57498832_57500287
transcript_48480.nic	chr19	+	1110	9	NIC	ENSMUSG00000025090.10	novel	1009	9	NA	NA	-54	0	combination_of_known_junctions	FALSE	canonical	2	10	junction_1	12.4172259381876	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTTAAGTTGGTCTGTCC	NA	False	NA	NA	False	ACTAAA	-5	NA	58500369	58541517	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_+_58500459_58500742_58500868_58501047_58501134_58514279_58514397_58515703_58515870_58524992_58525095_58525693_58525797_58539859_58539948_58541283
transcript_48482.known	chr19	+	1009	9	FSM	ENSMUSG00000025090.10	ENSMUST00000069419.8	1009	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	14.1686273153048	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAGAGGTCCTTGTACAG	NA	False	NA	NA	False	AATACA	-14	NA	58500452	58541460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_58500498_58500742_58500868_58501047_58501134_58514279_58514397_58515703_58515870_58524992_58525095_58525693_58525797_58539859_58539948_58541283
transcript_4849.known	chr1	-	6327	24	FSM	ENSMUSG00000040297.13	ENSMUST00000048377.11	6327	24	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_17	25.1317135224534	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAAATCTTCGTGTATCT	418	False	NA	NA	False	AATAAA	-14	NA	161704251	161643682	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_161646379_161647963_161648020_161655225_161655318_161655724_161655880_161656804_161656910_161660984_161661073_161661604_161662763_161665287_161665379_161666322_161666392_161671570_161671637_161672357_161672450_161672871_161672928_161673128_161673150_161674773_161674880_161676210_161676319_161679843_161679912_161680379_161680517_161681283_161681408_161684389_161684541_161684912_161685051_161686918_161687074_161689760_161689872_161691482_161691595_161703879
transcript_48491.nic	chr19	+	1448	8	NIC	ENSMUSG00000025090.10	novel	1009	9	NA	NA	2	110	intron_retention	FALSE	canonical	2	13	junction_5	11.9608203936768	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTGGTGCCATTTCTG	NA	False	NA	NA	False	NA	NA	NA	58500425	58541627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_+_58500868_58501047_58501134_58514279_58514397_58515703_58515870_58524992_58525095_58525693_58525797_58539859_58539948_58541283
transcript_48496.known	chr19	+	855	7	FSM	ENSMUSG00000025090.10	ENSMUST00000235305.2	855	7	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_5	14.1273965518539	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTTAAGTTGGTCTGTCC	NA	False	NA	NA	False	ACTAAA	-5	NA	58500423	58541517	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_58500459_58500742_58500868_58501047_58501134_58514279_58514397_58515703_58515870_58539855_58539948_58541283
transcript_48515.nic	chr19	+	893	5	ISM	ENSMUSG00000025090.10	ENSMUST00000235305.2	855	7	-54	25338	-54	-25281	5prime_fragment	FALSE	canonical	3	10	junction_1	12.8135670287395	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGGTTTTGTTATGAGC	NA	False	NA	NA	False	AATAAA	-20	NA	58500369	58516179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_+_58500459_58500742_58500868_58501047_58501134_58514279_58514397_58515703
transcript_4852.nnic	chr1	+	827	4	NNC	ENSMUSG00000103158.6	novel	537	3	NA	NA	-12637	-7932	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	6.84754619472471	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGATTACAGTTTTCCCT	521	False	NA	NA	False	NA	NA	NA	161705389	161720584	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_161705610_161708770_161709019_161719715_161719793_161720302
transcript_48521.nic	chr19	+	886	5	ISM	ENSMUSG00000025090.10	ENSMUST00000069419.8	1009	9	-37	25281	-8	-25281	5prime_fragment	FALSE	canonical	0	0	junction_1	16.7089048115069	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGGTTTTGTTATGAGC	NA	False	NA	NA	False	AATAAA	-20	NA	58500415	58516179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_+_58500498_58500742_58500868_58501047_58501134_58514279_58514397_58515703
transcript_4853.nnic	chr1	+	790	4	NNC	ENSMUSG00000103158.6	novel	537	3	NA	NA	-12634	-7932	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.24721912892465	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGATTACAGTTTTCCCT	524	False	NA	NA	False	NA	NA	NA	161705392	161720584	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_161705614_161708808_161709019_161719715_161719793_161720302
transcript_48533.nic	chr19	+	1121	4	NIC	ENSMUSG00000025090.10	novel	1009	9	NA	NA	2	-25281	intron_retention	FALSE	canonical	3	27	junction_2	7.36357401145817	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGGTTTTGTTATGAGC	NA	False	NA	NA	False	AATAAA	-20	NA	58500425	58516179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_+_58500868_58501047_58501134_58514279_58514397_58515703
transcript_48543.known	chr19	+	1572	12	FSM	ENSMUSG00000025091.5	ENSMUST00000026081.5	1572	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.31110955471418	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTCAGGTGTAGCATGACG	4014	False	NA	NA	False	AATAAA	-24	NA	58748150	58765966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_58748309_58748784_58748940_58749997_58750124_58750681_58750817_58751760_58751873_58753159_58753280_58754693_58754814_58756995_58757115_58759765_58759896_58762501_58762614_58763569_58763738_58765849
transcript_48546.known	chr19	-	1400	7	FSM	ENSMUSG00000025092.8	ENSMUST00000235263.2	1400	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.35889894354067	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTTCTGTCAGGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	58849399	58808150	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_58808810_58809431_58809549_58810495_58810601_58813682_58813870_58815987_58816113_58816684_58816771_58849278
transcript_48549.known	chr19	-	861	3	FSM	ENSMUSG00000025092.8	ENSMUST00000235791.2	861	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	2.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAACATGTACAGACTTCTG	NA	False	NA	NA	False	AATAAA	-12	NA	58932055	58915271	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_58915871_58920321_58920416_58931887
transcript_4855.known	chr1	+	3290	2	FSM	ENSMUSG00000026698.9	ENSMUST00000111594.3	3290	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	AAAAAG	-8	NA	161796754	161801004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_161796849_161797808
transcript_48550.known	chr19	-	612	3	FSM	ENSMUSG00000025092.8	ENSMUST00000237786.2	612	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	1	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGCATATGCATGTGTA	NA	False	NA	NA	False	AATAAA	-15	NA	58932086	58917075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_58917395_58920321_58920416_58931887
transcript_48551.known	chr19	-	5734	12	FSM	ENSMUSG00000025092.8	ENSMUST00000066285.6	5734	12	0	0	0	0	multi-exon	TRUE	canonical	2	6	junction_2	4.33704016068239	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGGCCTAGAATCGTTTTT	NA	False	NA	-1	True	AATAAA	-19	NA	58849416	58784181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_58788431_58789244_58789349_58792897_58793157_58793832_58793938_58794457_58794545_58797881_58798054_58809431_58809549_58810495_58810601_58813682_58813870_58815987_58816113_58816684_58816771_58849278
transcript_48552.known	chr19	-	1510	7	FSM	ENSMUSG00000025092.8	ENSMUST00000236429.2	1510	7	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	2.54405625374562	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTGTTCGCTCCACTGT	NA	False	NA	NA	False	CATAAA	-12	NA	58849444	58797329	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_58798054_58809431_58809549_58810495_58810601_58813682_58813870_58815987_58816113_58816684_58816771_58849278
transcript_48554.nnic	chr19	+	440	2	Genic_Genomic	ENSMUSG00000067038.7	novel	396	1	NA	NA	-83	31	multi-exon	FALSE	canonical	0	0	junction_1	0	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGCCCAGATCACAAGGT	NA	False	NA	NA	False	AATAAA	-28	NA	59310719	59311229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr19_+_59310982_59311051
transcript_48555.nnic	chr19	+	414	2	Genic_Genomic	ENSMUSG00000067038.7	novel	396	1	NA	NA	-83	37	multi-exon	FALSE	canonical	0	0	junction_1	0	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGATCACAAGGTTTCAGA	NA	False	NA	NA	False	AATAAA	-34	NA	59310719	59311235	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr19_+_59311037_59311138
transcript_48556.known	chr19	+	396	1	FSM	ENSMUSG00000067038.7	ENSMUST00000086764.7	396	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4839	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAAATTTTGGCTGAAA	NA	False	NA	NA	False	AAGAAA	-1	NA	59310802	59311198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_59310800_59311200
transcript_4856.known	chr1	+	2196	2	FSM	ENSMUSG00000026698.9	ENSMUST00000028021.7	2196	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATGTGACTACATATGAT	NA	False	NA	NA	False	AAAACA	-10	NA	161796756	161799899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_161796849_161797795
transcript_48560.nnic	chr19	-	1761	9	NIC	ENSMUSG00000057858.9	novel	2035	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	10	junction_8	106.243529214724	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTGTGTGTGTGTGT	9769	False	NA	NA	False	AGTAAA	-14	NA	60215133	60187330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60213296_60213332_60214663
transcript_48561.nnic	chr19	-	1683	9	NIC	ENSMUSG00000057858.9	novel	725	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	13	junction_8	105.606507256892	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTGTGTGTGTGTGT	9769	False	NA	NA	False	AGTAAA	-14	NA	60215133	60187330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60213296_60213332_60214741
transcript_48567.known	chr19	-	2035	8	FSM	ENSMUSG00000057858.9	ENSMUST00000065286.2	2035	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_7	81.0915330641484	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACCTGGGAAGTCATTGTC	9773	False	NA	NA	False	AATGAA	-25	NA	60215129	60187017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60214663
transcript_48568.nnic	chr19	-	1652	8	NIC	ENSMUSG00000057858.9	novel	2035	8	NA	NA	-4	0	intron_retention	FALSE	canonical	3	98	junction_7	67.6669515090684	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTGTGTGTGTGTGT	9765	False	NA	NA	False	AGTAAA	-14	NA	60215137	60187330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60214741
transcript_48569.known	chr19	-	951	8	FSM	ENSMUSG00000057858.9	ENSMUST00000238054.2	951	8	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_7	86.2054972440971	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATATTTGTGTAAGAAAT	9784	False	NA	NA	False	NA	NA	NA	60215118	60187678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60215075
transcript_4857.known	chr1	+	704	2	FSM	ENSMUSG00000026698.9	ENSMUST00000160881.2	704	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGTCTGTCAGTACAGACA	NA	False	NA	NA	False	NA	NA	NA	161796867	161798441	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_161796939_161797808
transcript_48573.known	chr19	-	725	8	FSM	ENSMUSG00000057858.9	ENSMUST00000237339.2	725	8	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_7	127.596941937637	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCAGAGTTCTTCAAGAC	9769	False	NA	NA	False	NA	NA	NA	60215133	60187866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60209485_60209737_60213296_60213332_60215075
transcript_4858.known	chr1	-	4541	8	FSM	ENSMUSG00000026694.20	ENSMUST00000028017.16	4541	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_6	17.6704526812185	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGCTTTTTTGTGGTCC	NA	False	NA	NA	False	NA	NA	NA	162376120	162359695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_162362120_162363410_162363543_162364687_162364901_162366400_162366569_162369826_162370023_162371754_162371955_162373336_162374097_162375672
transcript_48582.known	chr19	-	1598	7	FSM	ENSMUSG00000057858.9	ENSMUST00000235293.2	1598	7	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_5	113.09533834582	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCAGTTGATTTATTTT	9793	False	NA	NA	False	NA	NA	NA	60215109	60187346	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60209485_60209737_60214663
transcript_48583.nnic	chr19	-	1564	7	NIC	ENSMUSG00000057858.9	novel	1598	7	NA	NA	-4	0	intron_retention	FALSE	canonical	3	31	junction_5	103.870779764517	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTGTGTGTGTGTGT	9765	False	NA	NA	False	AGTAAA	-14	NA	60215137	60187330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60209485_60209737_60214741
transcript_48589.nnic	chr19	-	1315	6	NIC	ENSMUSG00000057858.9	novel	1598	7	NA	NA	-6	0	intron_retention	FALSE	canonical	2	3	junction_5	111.662706397436	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTGTGTGTGTGTGT	9763	False	NA	NA	False	AGTAAA	-14	NA	60215139	60187330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60214741
transcript_48598.known	chr19	-	1146	4	FSM	ENSMUSG00000057858.9	ENSMUST00000235995.2	1146	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	128.380510808906	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTGTGTGTGTGTGT	9801	False	NA	NA	False	AGTAAA	-14	NA	60215101	60187330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_60187920_60188401_60188509_60201104_60201195_60214741
transcript_48604.known	chr19	-	634	6	FSM	ENSMUSG00000057858.9	ENSMUST00000238119.2	634	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_4	118.009152187447	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTTCACTTAAGACCTGT	9773	False	NA	NA	False	AAGAAA	-13	NA	60215129	60188400	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60209485_60209737_60215075
transcript_48606.known	chr19	-	5125	22	FSM	ENSMUSG00000024991.9	ENSMUST00000025955.8	5125	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_17	309.066534016512	1004	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGTGTTTTGTCAATGG	8754	False	NA	-31	True	AATAAA	-17	NA	60779081	60749554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_60750743_60751502_60751703_60752469_60752672_60754771_60755434_60756012_60756102_60757145_60757331_60758303_60758458_60759452_60759576_60760081_60760196_60760530_60760636_60761129_60761478_60761944_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
transcript_48613.nic	chr19	+	2390	9	NIC	ENSMUSG00000024993.16	novel	2307	9	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	3	138	junction_1	88.7623230881211	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACTACTTGATGTC	NA	False	NA	NA	False	ATTAAA	-13	NA	60799985	60824665	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_+_60800112_60803029_60803247_60805968_60806049_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263
transcript_48614.known	chr19	+	2307	9	FSM	ENSMUSG00000024993.16	ENSMUST00000025957.9	2307	9	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_1	50.1458809375207	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACTACTTGATGTC	NA	False	NA	NA	False	ATTAAA	-13	NA	60800048	60824665	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_60800112_60803049_60803247_60805968_60806049_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263
transcript_48617.known	chr19	+	2267	8	FSM	ENSMUSG00000024993.16	ENSMUST00000119633.8	2267	8	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_2	141.985771060601	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACTACTTGATGTC	NA	False	NA	NA	False	ATTAAA	-13	NA	60800028	60824665	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_60800112_60803029_60803247_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263
transcript_48627.known	chr19	+	826	7	FSM	ENSMUSG00000024993.16	ENSMUST00000128357.8	826	7	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_1	101.211000719619	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGATCACCATCGCTCCA	NA	False	NA	NA	False	NA	NA	NA	60800022	60819302	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_+_60800112_60803029_60803247_60805968_60806049_60809644_60809794_60810732_60810845_60814268_60814370_60819224
transcript_48628.nnic	chr19	-	1017	5	NNC	ENSMUSG00000063698.10	novel	1218	13	NA	NA	9841	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	13.7204227340122	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTGAAAGAAATCATCAAAAG	NA	False	NA	NA	False	AATAAA	-20	NA	60840021	60827195	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_60827489_60830556_60830675_60832646_60832733_60839396_60839513_60839617
transcript_48631.known	chr19	-	1309	14	FSM	ENSMUSG00000063698.10	ENSMUST00000135808.8	1309	14	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_12	6.9961950774782	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCATCAAAAGGTATACCTTA	NA	False	NA	NA	False	AATAAA	-30	NA	60849917	60827185	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_60827489_60830556_60830675_60832646_60832733_60839396_60839513_60840449_60840529_60842124_60842191_60842301_60842359_60842444_60842499_60844264_60844291_60845647_60845703_60845787_60845815_60847101_60847177_60848466_60848533_60849736
transcript_48637.known	chr19	-	1478	7	FSM	ENSMUSG00000024997.8	ENSMUST00000025961.7	1478	7	0	0	0	0	multi-exon	FALSE	canonical	3	658	junction_4	52.5148127251308	1299	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGGGCACCGTTTCTCC	1447	False	NA	-1	True	AATAAA	-34	NA	60862994	60852488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_60853158_60853603_60853770_60855953_60856058_60858441_60858578_60859857_60860000_60861565_60861702_60862869
transcript_4864.known	chr1	-	1702	1	FSM	ENSMUSG00000026694.20	ENSMUST00000195027.2	1702	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAAAAAAATTATCAATG	NA	False	NA	NA	False	NA	NA	NA	162376098	162374396	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_162374400_162376100
transcript_48643.known	chr19	-	524	6	FSM	ENSMUSG00000074733.15	ENSMUST00000205712.2	524	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	21.918029108476	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAAGGTCAGTGACTCCAT	NA	False	NA	NA	False	NA	NA	NA	61129208	61105711	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_61105727_61106664_61106786_61108756_61108891_61115444_61115506_61115875_61116003_61129142
transcript_48644.known	chr19	-	2753	5	FSM	ENSMUSG00000074733.15	ENSMUST00000127290.8	2753	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	24.5051015096857	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGCTTTGGTCATGGTG	NA	False	NA	-4	True	NA	NA	NA	61129278	61103421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_61105727_61106664_61106789_61115444_61115506_61115875_61116003_61129142
transcript_48645.nnic	chr19	-	663	5	NNC	ENSMUSG00000074733.15	novel	2568	4	NA	NA	0	-753	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_3	21.2882009573378	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTATGAGTGTAATCAATG	NA	False	NA	NA	False	NA	NA	NA	61129278	61108610	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr19_-_61108891_61115444_61115506_61115875_61116003_61124801_61124861_61129142
transcript_48646.known	chr19	-	466	4	FSM	ENSMUSG00000074733.15	ENSMUST00000205854.2	466	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	21.5148527508066	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTTCAAGAATATATAAGTC	NA	False	NA	NA	False	NA	NA	NA	61129255	61105561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_61105727_61115444_61115506_61115875_61116003_61129142
transcript_48649.known	chr19	-	192	2	FSM	ENSMUSG00000074733.15	ENSMUST00000148569.4	192	2	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCATGTGCAAGCTGATA	6609	False	NA	NA	False	NA	NA	NA	61116002	61115440	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_61115506_61115875
transcript_4865.known	chr1	-	2482	8	FSM	ENSMUSG00000026694.20	ENSMUST00000159817.9	2482	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	33.4651814181089	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGAAAGTTGGTTTATCT	NA	False	NA	-11	True	NA	NA	NA	162376091	162361247	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_162362120_162363410_162363543_162364687_162364901_162366400_162366569_162369826_162370023_162371754_162371955_162373814_162374097_162375672
transcript_48650.known	chr19	-	1849	12	FSM	ENSMUSG00000059326.8	ENSMUST00000076046.7	1849	12	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_11	40.804310256849	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCTTTTGTTTTCTTTTG	9819	False	NA	-2	True	NA	NA	NA	61216856	61212839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_61213472_61213570_61213653_61213761_61213859_61213960_61214091_61214229_61214260_61214365_61214494_61214652_61214823_61214962_61215093_61215243_61215365_61215467_61215623_61215709_61215804_61216776
transcript_48656.nic	chr19	-	1442	8	ISM	ENSMUSG00000059326.8	ENSMUST00000237386.2	1771	11	679	-9	-14	0	3prime_fragment	FALSE	canonical	3	89	junction_6	20.6861878398834	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCTTTTGTTTTCTTTTG	9857	False	NA	-2	True	NA	NA	NA	61215135	61212839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr19_-_61213472_61213570_61213653_61213761_61213859_61213960_61214091_61214229_61214260_61214365_61214494_61214652_61214823_61214962
transcript_48659.nic	chr19	-	1548	7	NIC	ENSMUSG00000059326.8	novel	1849	12	NA	NA	-14	0	intron_retention	FALSE	canonical	3	89	junction_5	19.9728983041187	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCTTTTGTTTTCTTTTG	9857	False	NA	-2	True	NA	NA	NA	61215135	61212839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr19_-_61213472_61213570_61213653_61213761_61213859_61213960_61214091_61214229_61214494_61214652_61214823_61214962
transcript_4866.known	chr1	+	600	8	FSM	ENSMUSG00000026696.16	ENSMUST00000194810.6	600	8	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_5	110.137391007592	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAATGATCACCTTTCCAAC	NA	False	NA	NA	False	ACTAAA	-38	NA	162398337	162422298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_162398350_162401866_162401986_162405440_162405488_162409387_162409439_162415764_162415820_162417033_162417114_162420194_162420247_162422114
transcript_48668.known	chr19	-	2277	5	FSM	ENSMUSG00000059326.8	ENSMUST00000235172.2	2277	5	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_3	9.66953980290686	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGGGAGGTAGTGCACCT	9871	False	NA	NA	False	NA	NA	NA	61215121	61212394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr19_-_61213472_61213570_61213653_61213761_61213859_61213960_61214823_61214962
transcript_48677.nnic	chr19	-	480	3	Intergenic	novelGene_71	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	42	junction_2	4	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGGTGTCTGATTTGTGT	NA	False	NA	NA	False	NA	NA	NA	61301991	61286909	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr19_-_61287117_61287295_61287423_61301845
transcript_48679.nnic	chr19	-	810	3	Intergenic	novelGene_72	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_2	1.5	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAGGTCTGAGGC	NA	False	NA	NA	False	NA	NA	NA	61302009	61291319	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr19_-_61291734_61292476_61292709_61301845
transcript_48680.nnic	chr19	-	1781	3	Genic_Genomic	ENSMUSG00000118197.2	novel	243	1	NA	NA	-8242	2156	multi-exon	FALSE	canonical	0	0	junction_2	2	270	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAGGTCTGAGGC	NA	False	NA	NA	False	NA	NA	NA	61301960	61291319	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr19_-_61291734_61292476_61293729_61301845
transcript_48684.known	chr2	+	4461	14	FSM	ENSMUSG00000026643.17	ENSMUST00000081932.13	4461	14	0	0	0	0	multi-exon	TRUE	canonical	3	230	junction_10	26.4695873268632	766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGAGTGTTTTCTGTAC	987	False	NA	21	True	AATAAA	-21	NA	3285248	3329914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_3285444_3305848_3305985_3306433_3306477_3308019_3308070_3310503_3310649_3313492_3313612_3313698_3313791_3313897_3314015_3315730_3315902_3317176_3317286_3323607_3323779_3325867_3326036_3326300_3326439_3327107
transcript_48688.known	chr2	+	1676	13	FSM	ENSMUSG00000026643.17	ENSMUST00000091504.5	1676	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	77.5622957513651	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAGTAGTTGTTAACAAT	1043	False	NA	10	True	AATAAA	-19	NA	3285304	3327235	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_3285444_3305848_3305985_3306433_3306477_3310503_3310649_3313492_3313612_3313698_3313791_3313897_3314015_3315730_3315902_3317176_3317286_3323607_3323779_3325867_3326036_3326300_3326439_3327107
transcript_48689.known	chr2	+	2162	12	FSM	ENSMUSG00000026643.17	ENSMUST00000102989.10	2162	12	0	0	0	0	multi-exon	TRUE	canonical	3	6	junction_2	78.3416969921083	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACACAGCTGACTGATGAGA	1032	False	NA	NA	False	NA	NA	NA	3285293	3327753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_3285444_3305848_3305985_3310503_3310649_3313492_3313612_3313698_3313791_3313897_3314015_3315730_3315902_3317176_3317286_3323607_3323779_3325867_3326036_3326300_3326439_3327107
transcript_4869.known	chr1	+	1461	8	FSM	ENSMUSG00000026696.16	ENSMUST00000135241.8	1461	8	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_7	26.2336440784092	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAGTGAAGGCTGCAGGT	NA	False	NA	116	True	AATAAA	-21	NA	162398158	162422934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_162398350_162401866_162401986_162405440_162405488_162409387_162409439_162415764_162415866_162417033_162417114_162420194_162420247_162422114
transcript_48693.known	chr2	+	2450	2	FSM	ENSMUSG00000026643.17	ENSMUST00000155761.2	2450	2	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_1	0	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAATAAAATTA	1056	False	NA	NA	False	NA	NA	NA	3285317	3308172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_3285444_3305848
transcript_48697.known	chr2	-	1042	2	FSM	ENSMUSG00000049950.7	ENSMUST00000062672.7	1042	2	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	0	1501	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTAGGATCCTGCATGGA	2317	False	NA	-15	True	AATAAA	-18	NA	3333680	3329985	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_3330911_3333563
transcript_48698.known	chr2	+	531	4	FSM	ENSMUSG00000026644.8	ENSMUST00000115089.2	531	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	7.54247233265651	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATGTCTGTGTATGGAT	1038	False	NA	NA	False	AATAAA	-16	NA	3337204	3342030	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_3337259_3341369_3341488_3341591_3341655_3341734
transcript_48699.nnic	chr2	+	565	4	NNC	ENSMUSG00000026644.8	novel	534	4	NA	NA	-62	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	8.65383665716478	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGTGTATGGATATTTA	976	False	NA	NA	False	AATAAA	-21	NA	3337142	3342035	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_3337259_3341369_3341491_3341591_3341619_3341734
transcript_48700.known	chr2	+	534	4	FSM	ENSMUSG00000026644.8	ENSMUST00000228935.2	534	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	3.77123616632825	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATGTCTGTGTATGGAT	1038	False	NA	NA	False	AATAAA	-16	NA	3337204	3342030	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_3337259_3341369_3341491_3341591_3341655_3341734
transcript_48703.known	chr2	+	7075	16	FSM	ENSMUSG00000026648.19	ENSMUST00000061852.12	7075	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	10.5122151170277	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCAATGAACCCTTCTCCT	1002	False	NA	NA	False	TATAAA	-19	NA	3425167	3465167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_3425364_3426400_3426453_3430304_3430390_3434783_3434844_3437474_3437531_3438025_3438128_3438712_3438786_3438988_3439130_3441794_3441897_3444690_3444828_3445237_3445293_3448110_3448200_3451315_3451411_3453884_3454236_3458580_3458622_3459727
transcript_48704.known	chr2	+	3705	15	FSM	ENSMUSG00000026648.19	ENSMUST00000100463.10	3705	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	10.8836612237176	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTTATTTTAAGATAATT	1002	False	NA	NA	False	TATAAA	-20	NA	3425167	3462148	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_3425364_3426400_3426453_3430304_3430390_3434783_3434844_3437474_3437531_3438025_3438128_3438712_3438786_3438988_3439130_3441794_3441897_3444690_3444828_3445237_3445293_3448110_3448200_3451315_3451411_3458580_3458622_3459727
transcript_48705.known	chr2	+	2469	14	FSM	ENSMUSG00000026648.19	ENSMUST00000102988.10	2469	14	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	4.46419019339905	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAACAGGCTCAAAACCA	1021	False	NA	NA	False	NA	NA	NA	3425186	3455129	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_3425364_3426400_3426453_3430304_3430390_3434783_3434844_3437474_3437531_3438025_3438128_3438712_3438786_3438988_3439130_3441794_3441897_3444690_3444828_3445237_3445293_3448110_3448200_3451315_3451411_3453884
transcript_48712.nic	chr2	+	1470	12	ISM	ENSMUSG00000026648.19	ENSMUST00000102988.10	2469	14	-29	6618	-10	5268	5prime_fragment	FALSE	canonical	3	20	junction_5	4.48136637958772	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATGGATATTCATTCTTG	992	False	NA	NA	False	NA	NA	NA	3425157	3448511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_3425364_3426400_3426453_3430304_3430390_3434783_3434844_3437474_3437531_3438025_3438128_3438712_3438786_3438988_3439130_3441794_3441897_3444690_3444828_3445237_3445293_3448110
transcript_48713.nic	chr2	+	1429	12	NIC	ENSMUSG00000026648.19	novel	2469	14	NA	NA	-10	5268	combination_of_known_junctions	FALSE	canonical	1	1	junction_5	9.01788855828163	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATGGATATTCATTCTTG	992	False	NA	NA	False	NA	NA	NA	3425157	3448511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_3425364_3426400_3426453_3430304_3430390_3434783_3434844_3437474_3437531_3438066_3438128_3438712_3438786_3438988_3439130_3441794_3441897_3444690_3444828_3445237_3445293_3448110
transcript_48715.nnic	chr2	+	1414	11	NIC	ENSMUSG00000026648.19	novel	2469	14	NA	NA	-10	5268	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	9.7082439194738	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATGGATATTCATTCTTG	992	False	NA	NA	False	NA	NA	NA	3425157	3448511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_3425364_3426400_3426453_3430304_3430390_3434783_3434844_3438025_3438128_3438712_3438786_3438988_3439130_3441794_3441897_3444690_3444828_3445237_3445293_3448110
transcript_48719.known	chr2	-	4327	6	FSM	ENSMUSG00000026646.17	ENSMUST00000027956.9	4327	6	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_5	33.2024095511154	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGTTGTTCTGTATTT	NA	False	NA	-2	True	AATAAA	-16	NA	3476068	3456851	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_3459767_3460793_3460924_3463517_3463665_3465303_3465964_3473538_3473685_3475739
transcript_48720.nic	chr2	+	433	4	ISM	ENSMUSG00000026648.19	ENSMUST00000132565.8	655	8	-29	4178	-10	-4178	5prime_fragment	FALSE	canonical	3	25	junction_3	4.49691252107735	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTAGTGTTGATATGATT	992	False	NA	NA	False	AATAAA	-15	NA	3425157	3434873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_3425364_3426400_3426453_3430304_3430390_3434783
transcript_48724.known	chr2	-	1795	14	FSM	ENSMUSG00000109865.2	ENSMUST00000027961.12	1795	14	0	0	0	0	multi-exon	FALSE	canonical	3	902	junction_5	73.9537677425134	4460	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGAGTCTTTGTTTTCTT	3942	False	NA	-5	True	ATTAAA	-20	NA	3513851	3489886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_3490107_3490734_3490806_3491973_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
transcript_48725.known	chr2	+	3156	4	FSM	ENSMUSG00000026655.16	ENSMUST00000027965.11	3156	4	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_1	8.49836585598797	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATGTTTGTCTCGTTTGT	944	False	NA	19	True	AATAAA	-25	NA	3714494	3783179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_3714674_3773832_3774017_3779454_3779606_3780537
transcript_48729.known	chr2	-	1579	10	FSM	ENSMUSG00000039449.15	ENSMUST00000152362.7	1579	10	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_5	16.2305914484172	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTATGGGTCATTGAAT	NA	False	NA	NA	False	NA	NA	NA	4656924	4628838	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_4629338_4638243_4638400_4640441_4640514_4640638_4640780_4641958_4642028_4643659_4643807_4648461_4648576_4650379_4650485_4653051_4653130_4656726
transcript_4873.known	chr1	+	2752	8	FSM	ENSMUSG00000026696.16	ENSMUST00000132158.8	2752	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_7	107.103040220574	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCACTGTGGCTTGTTCAG	NA	False	NA	73	True	AATAAA	-24	NA	162398083	162426653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_162398350_162401866_162401986_162405440_162405488_162409387_162409439_162415764_162415866_162417033_162417114_162420194_162420247_162424617
transcript_48735.nic	chr2	-	485	2	ISM	ENSMUSG00000039449.15	ENSMUST00000140818.8	551	5	-49	9121	-23	-4368	5prime_fragment	FALSE	canonical	3	186	junction_1	0	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACCCAGATCTTGAATT	NA	False	NA	NA	False	NA	NA	NA	4656947	4652865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_4653130_4656726
transcript_48738.known	chr2	+	5319	9	FSM	ENSMUSG00000026662.14	ENSMUST00000027973.14	5319	9	0	0	0	0	multi-exon	FALSE	canonical	3	382	junction_1	74.2242169039189	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCATGTCTCTGTTTACT	4092	False	NA	NA	False	AATAAA	-17	NA	4886374	4915368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_4886672_4889142_4889417_4893993_4894098_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
transcript_48743.known	chr2	+	2933	9	FSM	ENSMUSG00000026662.14	ENSMUST00000115019.2	2933	9	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	174.928378200908	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGAGAAAAAGCACCAAG	4773	False	NA	NA	False	NA	NA	NA	4887055	4912948	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_4887387_4889142_4889417_4893993_4894098_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
transcript_48746.nic	chr2	+	1300	8	NIC	ENSMUSG00000026662.14	novel	5319	9	NA	NA	238	-1257	combination_of_known_junctions	FALSE	canonical	3	91	junction_2	174.392707205693	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATTGTGTCTACACATC	4330	False	NA	20	True	ATTAAA	-20	NA	4886612	4911691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_4886672_4889142_4889417_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
transcript_48765.known	chr2	+	1438	9	FSM	ENSMUSG00000026664.8	ENSMUST00000027975.8	1438	9	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_4	31.960669188864	3277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCATATTAAGTCAATTTCT	991	False	NA	9	True	AATAAA	-20	NA	4923829	4943541	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_4923956_4927638_4927698_4930408_4930520_4932160_4932330_4933481_4933564_4935523_4935706_4940779_4940930_4942486_4942622_4943117
transcript_48766.known	chr2	+	748	5	FSM	ENSMUSG00000026664.8	ENSMUST00000146933.2	748	5	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_4	38.479702441677	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTCTTAGTCACTCTGGG	1052	False	NA	NA	False	CATAAA	-1	NA	4923890	4933825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_4923956_4927638_4927698_4930408_4930520_4932160_4932330_4933481
transcript_48767.nnic	chr2	+	902	3	Genic_Genomic	ENSMUSG00000083378.4_ENSMUSG00000086670.2	novel	379	1	NA	NA	-11	287	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGGGGCCTGGGAAAAATA	4811	False	NA	NA	False	AATAAA	-34	NA	4705037	4947582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr2_+_4705495_4946974_4947269_4947431
transcript_48774.known	chr2	+	847	5	FSM	ENSMUSG00000026668.11	ENSMUST00000115010.9	847	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.82915619758885	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATCAACACTGTGTATCAT	4781	False	NA	NA	False	AATAAA	-7	NA	4980961	4990551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_4981121_4981465_4981532_4981620_4981717_4986048_4986148_4990124
transcript_48776.known	chr2	+	430	4	FSM	ENSMUSG00000026668.11	ENSMUST00000127282.2	430	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGGAACAGAGAGATGGTAA	4755	False	NA	NA	False	NA	NA	NA	4980935	4986131	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_4981121_4981465_4981532_4981620_4981717_4986048
transcript_48777.known	chr2	-	3494	20	FSM	ENSMUSG00000026669.15	ENSMUST00000027980.8	3494	20	0	0	0	0	multi-exon	FALSE	canonical	3	560	junction_19	72.612354435182	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCTGTGAAACGTGACTC	NA	False	NA	0	True	AATAAA	-38	NA	5017602	4995534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499_5015587_5017515
transcript_48782.known	chr2	-	866	4	FSM	ENSMUSG00000026669.15	ENSMUST00000125851.2	866	4	0	0	0	0	multi-exon	FALSE	canonical	3	560	junction_3	90.1566537878499	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCGCGCGCGTGTGTGTGTG	NA	False	NA	NA	False	AATACA	-15	NA	5017526	5011808	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_5012244_5013290_5013624_5015499_5015587_5017515
transcript_48785.known	chr2	-	1343	6	FSM	ENSMUSG00000026669.15	ENSMUST00000125349.8	1343	6	0	0	0	0	multi-exon	FALSE	canonical	3	627	junction_5	93.7285442114621	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCTGTGAAACGTGACTC	870	False	NA	0	True	AATAAA	-38	NA	5000705	4995534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380_4999494_5000531
transcript_48786.known	chr2	-	2411	15	FSM	ENSMUSG00000026672.12	ENSMUST00000027986.5	2411	15	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	40.4028817925511	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTGTTATCTGATTTA	NA	False	NA	-2	True	AGTAAA	-15	NA	5068749	5025454	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_5026040_5026133_5026293_5028877_5028961_5031924_5032056_5036070_5036230_5037941_5038036_5038964_5039115_5039778_5039895_5041481_5041582_5044949_5045085_5047257_5047332_5050797_5051011_5057798_5058002_5059350_5059528_5068717
transcript_48787.known	chr2	-	2614	14	FSM	ENSMUSG00000026672.12	ENSMUST00000114996.8	2614	14	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_13	32.625179951441	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTTATCTGATTTATT	NA	False	NA	0	True	AGTAAA	-17	NA	5068856	5025452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_5026293_5028877_5028961_5031924_5032056_5036070_5036230_5037941_5038036_5038964_5039115_5039778_5039895_5041481_5041582_5044949_5045085_5047257_5047332_5050797_5051011_5057798_5058002_5059350_5059528_5068717
transcript_4879.known	chr1	+	682	4	FSM	ENSMUSG00000026696.16	ENSMUST00000128704.8	682	4	0	0	0	0	multi-exon	FALSE	canonical	3	321	junction_3	12.7540843131393	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTTTGGAATCCTGTGTT	NA	False	NA	NA	False	NA	NA	NA	162398195	162409749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_162398350_162401866_162401986_162405440_162405488_162409387
transcript_48800.known	chr2	-	1295	11	FSM	ENSMUSG00000039145.17	ENSMUST00000114987.4	1295	11	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_3	6.22976725086901	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGCACCTGCATAGGACTG	1177	False	NA	NA	False	NA	NA	NA	5680857	5303697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_5303913_5306306_5306425_5308101_5308190_5315802_5315882_5317899_5318013_5343992_5344069_5359479_5359607_5366799_5366939_5449880_5449956_5570459_5570592_5680724
transcript_4881.known	chr1	-	1827	12	FSM	ENSMUSG00000040225.16	ENSMUST00000183011.8	1827	12	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_8	11.5006288006316	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAGGAAAAAGTTGAA	3566	False	NA	NA	False	NA	NA	NA	162567973	162537935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_162538399_162540872_162540927_162541811_162541957_162542960_162543049_162543154_162543289_162543847_162543931_162546258_162546480_162548049_162548176_162549013_162549109_162550678_162550851_162552272_162552439_162567893
transcript_48825.known	chr2	-	1827	13	FSM	ENSMUSG00000039128.14	ENSMUST00000043864.9	1827	13	0	0	0	0	multi-exon	FALSE	canonical	3	980	junction_5	82.7531050105607	3741	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGCTTGCTCTCTGGTTC	NA	False	NA	NA	False	AATAAA	-14	NA	5849975	5799104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_5799692_5800359_5800498_5803171_5803301_5808757_5808787_5809721_5809845_5812241_5812318_5815606_5815656_5826086_5826194_5827912_5828009_5837891_5837925_5838466_5838525_5846763_5846836_5849645
transcript_48826.known	chr2	-	516	6	FSM	ENSMUSG00000039128.14	ENSMUST00000124287.8	516	6	0	0	0	0	multi-exon	FALSE	canonical	3	980	junction_1	41.2262052583063	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGGAACACCTACAGTATA	6957	False	NA	NA	False	AAAAAG	-32	NA	5837994	5809759	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_5809845_5812241_5812318_5815606_5815656_5826086_5826194_5827912_5828009_5837891
transcript_48827.known	chr2	-	772	6	FSM	ENSMUSG00000039128.14	ENSMUST00000128467.4	772	6	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	388.054326093654	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTCATCATTGCTTTTTA	6462	False	NA	2	True	AATACA	-18	NA	5838489	5814365	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_5814830_5815606_5815656_5826086_5826194_5827912_5828009_5837891_5837925_5838466
transcript_48828.known	chr2	+	1590	10	FSM	ENSMUSG00000025817.13	ENSMUST00000179748.8	1590	10	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	225.953780917937	3221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGAAGACTTGGGGGTTT	1717	False	NA	NA	False	NA	NA	NA	5849844	5873547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_5850197_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869259_5871042_5871053_5871164_5871219_5872899
transcript_48829.known	chr2	+	1677	3	FSM	ENSMUSG00000025817.13	ENSMUST00000138549.8	1677	3	0	0	0	0	multi-exon	FALSE	canonical	3	607	junction_1	40	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAGAAAAAAAAAAAAAA	1936	False	NA	NA	False	NA	NA	NA	5850063	5862231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_5850197_5859626_5859730_5860790
transcript_48830.known	chr2	-	2448	12	FSM	ENSMUSG00000025816.16	ENSMUST00000102981.10	2448	12	0	0	0	0	multi-exon	TRUE	canonical	3	221	junction_3	37.3630833845388	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAGTGTTCTCTAAGAGT	NA	False	NA	-17	True	AATAAA	-10	NA	5900243	5875797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_5876833_5878553_5878631_5879037_5879230_5881174_5881373_5881651_5881813_5882665_5882820_5887391_5887502_5887628_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900067
transcript_48831.known	chr2	-	2110	11	FSM	ENSMUSG00000025816.16	ENSMUST00000193792.6	2110	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	89.7356673792534	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAACTGTTGCAGTTGT	NA	False	NA	-59	True	AATAAA	-9	NA	5900145	5875839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_5876833_5878553_5878631_5879037_5879230_5881651_5881813_5882665_5882820_5887391_5887502_5887628_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900067
transcript_48832.known	chr2	-	1303	6	FSM	ENSMUSG00000025816.16	ENSMUST00000194565.2	1303	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	114.035783857524	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5900145	5886618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_5887502_5887628_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900070
transcript_48833.known	chr2	-	276	2	FSM	ENSMUSG00000039128.14	ENSMUST00000152998.2	276	2	0	0	0	0	multi-exon	FALSE	canonical	3	990	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATATGCCTGTCAAGGTT	NA	False	NA	NA	False	AATAAA	-11	NA	5827930	5825935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_5826194_5827912
transcript_48834.nic	chr2	-	1247	3	ISM	ENSMUSG00000025815.14	ENSMUST00000026924.7	3852	18	-56	33003	-7	-5299	5prime_fragment	FALSE	canonical	3	50	junction_2	4	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATCTGGATAGCATTAGA	NA	False	NA	NA	False	AATAAA	-16	NA	5947610	5934991	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_5935798_5937197_5937354_5947325
transcript_48835.known	chr2	+	5174	22	FSM	ENSMUSG00000043241.15	ENSMUST00000060092.13	5174	22	0	0	0	0	multi-exon	TRUE	canonical	3	171	junction_5	24.2975694686972	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGATTTGTTTTATTTGGT	1678	False	NA	17	True	AATAAA	-21	NA	5956279	6061514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_5956365_5962281_5962662_5965743_5966524_5978279_5978441_5980718_5980914_5984584_5984735_5987802_5987907_5993197_5993284_6008355_6008465_6015125_6015240_6023712_6023830_6028093_6028280_6030925_6031130_6032023_6032300_6034172_6034357_6038922_6039063_6044919_6045022_6045273_6045373_6051708_6051877_6055148_6055291_6056319_6056441_6060243
transcript_48839.nic	chr2	+	370	2	ISM	ENSMUSG00000043241.15	ENSMUST00000060092.13	5174	22	-67	99015	-67	-97814	5prime_fragment	FALSE	canonical	3	197	junction_1	0	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAGACAAGGAACGCAAGA	1611	False	NA	21	True	NA	NA	NA	5956212	5962499	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_5956365_5962281
transcript_4884.known	chr1	-	1342	5	FSM	ENSMUSG00000040225.16	ENSMUST00000182288.2	1342	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	1.78535710713571	453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACACATGTAAATGTTTTA	3473	False	NA	NA	False	AATAAA	-19	NA	162568066	162547460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_162548176_162548998_162549109_162550678_162550857_162552272_162552439_162567893
transcript_48840.nic	chr2	+	440	2	ISM	ENSMUSG00000043241.15	ENSMUST00000060092.13	5174	22	-67	98945	-67	-97744	5prime_fragment	FALSE	canonical	3	197	junction_1	0	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAGGAAGAAAAGAAGAAACA	1611	False	NA	33	True	NA	NA	NA	5956212	5962569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_5956365_5962281
transcript_48842.known	chr2	-	2061	4	FSM	ENSMUSG00000045319.14	ENSMUST00000054254.12	2061	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	15.3260852434302	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAAATGCTTGTTAAAT	NA	False	NA	NA	False	NA	NA	NA	6134957	6104835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_6106172_6107623_6107877_6118703_6118925_6134706
transcript_48843.known	chr2	-	4398	4	FSM	ENSMUSG00000045319.14	ENSMUST00000114942.9	4398	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	5.90668171555645	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAATGTG	NA	False	NA	NA	False	ATTAAA	-43	NA	6135022	6102417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_6106172_6107623_6107877_6118703_6118925_6134852
transcript_48845.known	chr2	-	1851	5	FSM	ENSMUSG00000039063.6	ENSMUST00000042658.5	1851	5	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	2.1650635094611	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCGTCTATCCACCTAACT	NA	False	NA	NA	False	CATAAA	-22	NA	6217844	6193275	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_6194463_6200393_6200595_6211225_6211324_6213278_6213401_6217601
transcript_48849.known	chr2	-	737	4	FSM	ENSMUSG00000079602.3	ENSMUST00000125091.2	737	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTCTCTCGCTAATTGC	NA	False	NA	NA	False	ATTAAA	-15	NA	9894351	9887851	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_9888138_9888561_9888607_9892401_9892479_9894022
transcript_48850.known	chr2	-	4792	7	FSM	ENSMUSG00000025782.13	ENSMUST00000026888.11	4792	7	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_4	19.5078331845327	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTTCCATTTTCTT	NA	False	NA	0	True	AATAAA	-20	NA	10053407	9919362	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_9921278_9922913_9923021_9925862_9926113_9945737_9945821_9955924_9957757_10047237_10047481_10053045
transcript_48853.nic	chr2	-	1151	3	ISM	ENSMUSG00000025782.13	ENSMUST00000026888.11	4792	7	-29	37877	-29	-36351	5prime_fragment	FALSE	canonical	3	137	junction_1	7	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTCACCTGGACGCTCCA	NA	False	NA	NA	False	AAGAAA	-2	NA	10053436	9957239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_9957757_10047237_10047481_10053045
transcript_48865.known	chr2	-	1166	10	FSM	ENSMUSG00000025781.15	ENSMUST00000114897.9	1166	10	0	0	0	0	multi-exon	FALSE	canonical	3	3857	junction_2	289.314942238504	11802	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9504	False	NA	-2	True	AATAAA	-19	NA	10085321	10060840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
transcript_48866.known	chr2	-	1060	9	FSM	ENSMUSG00000025781.15	ENSMUST00000026887.14	1060	9	0	0	0	0	multi-exon	TRUE	canonical	3	78	junction_1	1503.84357564209	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAATTGTAACTTTCAGAA	9587	False	NA	12	True	AATAAA	-33	NA	10085238	10060826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_10060973_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
transcript_48867.known	chr2	-	1735	10	FSM	ENSMUSG00000025781.15	ENSMUST00000114896.8	1735	10	0	0	0	0	multi-exon	FALSE	canonical	1	58	junction_9	1417.11214782253	1294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9570	False	NA	-2	True	AATAAA	-19	NA	10085255	10060840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10084523
transcript_48869.known	chr2	+	1472	5	FSM	ENSMUSG00000037262.8	ENSMUST00000042512.8	1472	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	5.40832691319598	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAAGACACAGTGGCATC	4825	False	NA	NA	False	NA	NA	NA	10085434	10097617	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_10085556_10090540_10090636_10094923_10094968_10095051_10095175_10096528
transcript_48870.nnic	chr2	+	1519	5	NNC	ENSMUSG00000037262.8	novel	1472	5	NA	NA	-8	-105	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	19.6643713349804	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTTATTTTATCTTTG	4786	False	NA	NA	False	AATAAA	-24	NA	10085395	10097512	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_10085556_10090540_10090636_10094923_10094968_10095051_10095288_10096528
transcript_48872.known	chr2	+	600	4	FSM	ENSMUSG00000037262.8	ENSMUST00000142599.2	600	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	6.16441400296898	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAAGATCTGGACGATGAA	4794	False	NA	NA	False	AAAAAG	-5	NA	10085403	10096630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_10085556_10090540_10090636_10094923_10095175_10096528
transcript_48873.nnic	chr2	+	1361	4	NIC	ENSMUSG00000037262.8	novel	1472	5	NA	NA	-7	-105	combination_of_known_splicesites	TRUE	canonical	2	2	junction_2	22.2261107708929	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTTATTTTATCTTTG	4787	False	NA	NA	False	AATAAA	-24	NA	10085396	10097512	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_10085556_10090540_10090636_10095051_10095175_10096528
transcript_48876.nnic	chr2	+	396	3	Intergenic	novelGene_73	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTATATTGTCTCCAGC	NA	False	NA	NA	False	NA	NA	NA	10176968	10182197	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr2_+_10177106_10179127_10179254_10182064
transcript_48880.known	chr2	+	1813	7	FSM	ENSMUSG00000061186.16	ENSMUST00000114861.8	1813	7	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	22.0334341903894	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGAAAAAGAAAAAAATAATG	2764	False	NA	NA	False	AATATA	-9	NA	10375321	10443948	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_10375364_10376219_10376271_10384995_10385047_10398075_10398218_10406799_10406895_10409248_10409490_10442757
transcript_48882.known	chr2	+	1901	6	FSM	ENSMUSG00000061186.16	ENSMUST00000114864.9	1901	6	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	9.3936148526539	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGAAAAAGAAAAAAATAATG	4689	False	NA	NA	False	AATATA	-9	NA	10377246	10443948	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_10377428_10384995_10385047_10398075_10398218_10406799_10406895_10409248_10409490_10442757
transcript_48884.known	chr2	+	7874	23	FSM	ENSMUSG00000061186.16	ENSMUST00000041105.7	7874	23	0	0	0	0	multi-exon	TRUE	canonical	3	38	junction_1	8.61768314629387	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGGTGTTTGTGTTTCGT	4703	False	NA	3	True	AATAAA	-16	NA	10377260	10600064	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_10377428_10384995_10385047_10398075_10398218_10406799_10406895_10409248_10409490_10442757_10442847_10444677_10444925_10450495_10450594_10461715_10461818_10466135_10466284_10528755_10528839_10535301_10535426_10547743_10547858_10552241_10552285_10561029_10561104_10562378_10562522_10573171_10573282_10580146_10580323_10582339_10582439_10582625_10582943_10583945_10584204_10585354_10585484_10595240
transcript_4889.nic	chr1	-	2570	5	NIC	ENSMUSG00000040124.6	novel	2538	5	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_3	29.2179311382582	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTATGGTCTGTCATTTAA	NA	False	NA	-1	True	AATAAA	-18	NA	163231266	163212476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_163214267_163219978_163220120_163222159_163222262_163224376_163224739_163231091
transcript_48894.nnic	chr2	-	749	5	NNC	ENSMUSG00000086748.2	novel	1020	4	NA	NA	8758	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	255.585968902833	613	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTTGTGTTCATTCTGT	NA	False	NA	-13	True	AATAAA	-14	NA	10370094	10344093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_10344284_10346331_10346540_10350061_10350197_10351924_10352011_10369964
transcript_4890.known	chr1	-	2538	5	FSM	ENSMUSG00000040124.6	ENSMUST00000045138.6	2538	5	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_3	10.1827059272082	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTATGGTCTGTCATTTAA	NA	False	NA	-1	True	AATAAA	-18	NA	163231238	163212476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_163214267_163219978_163220120_163222159_163222262_163224380_163224739_163231091
transcript_48904.known	chr2	-	4801	15	FSM	ENSMUSG00000026773.20	ENSMUST00000192949.6	4801	15	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	9.7969174660571	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTAATAGACTATTGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	11558888	11476243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_11479355_11485008_11485183_11486681_11486747_11486864_11486928_11487255_11487386_11488739_11488845_11489015_11489163_11489465_11489674_11491029_11491155_11493536_11493594_11494481_11494557_11495100_11495168_11497370_11497468_11498713_11498840_11558637
transcript_48907.known	chr2	-	1599	12	FSM	ENSMUSG00000037197.12	ENSMUST00000040314.12	1599	12	0	0	0	0	multi-exon	FALSE	canonical	3	1239	junction_6	93.4948621914506	3026	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTCTCTGGTTGTTTCT	NA	False	NA	-24	True	TATAAA	-18	NA	11608073	11590247	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_11590540_11590644_11590718_11591677_11591777_11592531_11592606_11593738_11593903_11595499_11595642_11598218_11598276_11600141_11600240_11601439_11601607_11602862_11602980_11605429_11605568_11607895
transcript_48915.nic	chr2	-	3595	21	NIC	ENSMUSG00000058594.16	novel	3567	21	NA	NA	0	0	intron_retention	FALSE	canonical	3	88	junction_20	47.1269296687149	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTCAGTACTGTCATTT	NA	False	NA	-2	True	ATTAAA	-35	NA	11782393	11747385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753301_11753747_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774586_11774743_11782214
transcript_48916.known	chr2	-	3567	21	FSM	ENSMUSG00000058594.16	ENSMUST00000071564.14	3567	21	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_20	31.6521721213569	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTCAGTACTGTCATTT	NA	False	NA	-2	True	ATTAAA	-35	NA	11782393	11747385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753301_11753747_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774586_11774743_11782242
transcript_4892.known	chr1	-	1790	4	FSM	ENSMUSG00000040113.15	ENSMUST00000159679.8	1790	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.4142135623731	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACTGGCTTTCAACAGTG	NA	False	NA	NA	False	AGTAAA	-23	NA	163552801	163529824	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_163530858_163531571_163531822_163544651_163544828_163552470
transcript_48923.known	chr2	+	1485	7	FSM	ENSMUSG00000047909.12	ENSMUST00000156067.8	1485	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	24.8439574589521	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGTTGGCCTATTCAATT	4841	False	NA	33	True	AATAAA	-35	NA	11783374	11795136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_11783714_11784487_11784635_11786287_11786345_11788451_11788561_11789101_11789264_11791034_11791114_11794544
transcript_48925.known	chr2	+	1618	7	FSM	ENSMUSG00000047909.12	ENSMUST00000056108.12	1618	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_3	18.7742435858871	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGTTGGCCTATTCAATT	4768	False	NA	33	True	AATAAA	-35	NA	11783301	11795136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_11783714_11784487_11784709_11786287_11786331_11788451_11788561_11789101_11789264_11791034_11791114_11794544
transcript_48928.known	chr2	+	3688	6	FSM	ENSMUSG00000047909.12	ENSMUST00000125024.8	3688	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	23.3871759731696	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTTTATTCAAGCTCTAA	4804	False	NA	11	True	AATAAA	-13	NA	11783337	11795114	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_11783714_11784487_11784709_11786287_11788568_11789101_11789264_11791034_11791114_11794544
transcript_48929.known	chr2	+	1919	2	FSM	ENSMUSG00000047909.12	ENSMUST00000150320.3	1919	2	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAATAGGATTAAAAAAA	4849	False	NA	NA	False	NA	NA	NA	11783382	11786075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_11783714_11784487
transcript_48934.known	chr2	-	1843	10	FSM	ENSMUSG00000026767.13	ENSMUST00000194533.6	1843	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	51.3963057710725	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGCACTTTTACATTTG	NA	False	NA	-22	True	AATAAA	-19	NA	12424259	12352073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12423969
transcript_48939.nic	chr2	-	1469	8	NIC	ENSMUSG00000026767.13	novel	2344	15	NA	NA	-15	112	combination_of_known_junctions	FALSE	canonical	3	20	junction_7	51.1843407175855	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTATGTGGGAACTTCTAT	NA	False	NA	-2	True	AATAAA	-23	NA	12424296	12352330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12423969
transcript_4894.known	chr1	+	3946	20	FSM	ENSMUSG00000026585.14	ENSMUST00000027877.7	3946	20	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_2	20.2454468052323	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCAACTCTCATTTTTATG	NA	False	NA	18	True	ATTAAA	-25	NA	163607151	163744678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_163607472_163610553_163610686_163621517_163621673_163623553_163623610_163624820_163624963_163641937_163642038_163643393_163643519_163645401_163645501_163653256_163653436_163656701_163656865_163676229_163676331_163683604_163683714_163685040_163685154_163689523_163689690_163690279_163690406_163693007_163693107_163696269_163696356_163710951_163711142_163715774_163715875_163743293
transcript_48941.nic	chr2	-	1071	8	NIC	ENSMUSG00000026767.13	novel	2344	15	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_7	51.1843407175855	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACGTTTAAATTATTTGT	NA	False	NA	-3	True	ATTAAA	-22	NA	12424296	12352728	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12423969
transcript_48949.known	chr2	-	2344	15	FSM	ENSMUSG00000026767.13	ENSMUST00000028105.13	2344	15	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_11	25.5990473355904	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGCACTTTTACATTTG	NA	False	NA	-22	True	AATAAA	-19	NA	12424281	12352073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12404833_12404949_12405835_12405888_12408808_12408980_12410670_12410732_12414811_12414892_12423969
transcript_48950.known	chr2	-	1324	12	FSM	ENSMUSG00000026767.13	ENSMUST00000130225.7	1324	12	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_8	26.1641354428361	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCCAATCTGAGGACAGAAG	NA	False	NA	NA	False	AATAAA	-21	NA	12424242	12361595	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12404833_12404949_12405835_12405888_12408808_12408980_12410670_12410732_12414811_12414892_12423969
transcript_48951.known	chr2	+	3571	5	FSM	ENSMUSG00000026730.13	ENSMUST00000134794.8	3571	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	18.3490462967425	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAGTCTAAATGTATTCT	4763	False	NA	NA	False	AATAAA	-17	NA	12928902	13008266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_12929010_12982970_12983429_12985103_12985370_12999560_12999702_13005667
transcript_48955.nic	chr2	+	1320	4	NIC	ENSMUSG00000026730.13	novel	3571	5	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	1	7	junction_1	21.1712593442672	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGTGTTTTCCACTTAT	4715	False	NA	NA	False	AATAAA	-39	NA	12928854	13006425	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_12929010_12985103_12985370_12999560_12999702_13005667
transcript_48956.known	chr2	+	1232	6	FSM	ENSMUSG00000026730.13	ENSMUST00000154269.7	1232	6	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	7.33212111192934	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAGATGCTCCTTAGAGG	4712	False	NA	NA	False	NA	NA	NA	12928851	13005791	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_12929010_12979179_12979265_12982970_12983429_12985103_12985370_12999560_12999702_13005667
transcript_48965.known	chr2	-	1546	9	FSM	ENSMUSG00000026727.11	ENSMUST00000028059.9	1546	9	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_5	20.3588893361106	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATCACACGTTTCTTCTTG	7043	False	NA	-7	True	AATAAA	-12	NA	13276226	13081822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_13082419_13174808_13174942_13221580_13221696_13221999_13222083_13223819_13223939_13229115_13229237_13246555_13246607_13275721_13275834_13276010
transcript_48966.known	chr2	-	1604	8	FSM	ENSMUSG00000026727.11	ENSMUST00000114791.9	1604	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	120.515389820858	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCAGTTTGTCAGGGTTTT	7125	False	NA	NA	False	ATTAAA	-21	NA	13276144	13081631	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_13082419_13174808_13174942_13221580_13221696_13221999_13222083_13223819_13223939_13229115_13229237_13275721_13275834_13276010
transcript_4897.nic	chr1	+	625	3	ISM	ENSMUSG00000026585.14	ENSMUST00000077642.12	4012	21	-18	123006	-18	-123006	5prime_fragment	FALSE	canonical	3	150	junction_2	5	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGCAGAAGGAGTCTGCA	NA	False	NA	14	True	NA	NA	NA	163607133	163621672	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_163607472_163610553_163610686_163621517
transcript_48974.known	chr2	-	1505	7	FSM	ENSMUSG00000026727.11	ENSMUST00000162223.8	1505	7	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_3	21.3911975666005	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGTCATTTCTTCTATCC	7125	False	NA	NA	False	NA	NA	NA	13276144	13220810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_13221696_13221999_13222083_13223819_13223939_13229115_13229237_13246555_13246607_13275721_13275834_13276010
transcript_48978.nnic	chr2	-	1658	12	NNC	ENSMUSG00000026723.11	novel	3788	11	NA	NA	-35	-2097	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	11.4437178262115	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATGATCCTTAGAAAATTA	8994	False	NA	NA	False	TATAAA	-18	NA	13549514	13515921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_13516087_13516154_13516502_13520825_13520956_13521469_13521528_13524566_13524911_13526073_13526158_13526888_13526959_13527634_13527701_13528236_13528309_13530428_13530506_13538194_13538305_13549379
transcript_48983.known	chr2	-	3788	11	FSM	ENSMUSG00000026723.11	ENSMUST00000124488.7	3788	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_8	5.37028863283902	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACCATTGTGAAACTTACT	9029	False	NA	NA	False	ATTAAA	-23	NA	13549479	13513824	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_13516502_13520825_13520956_13521469_13521528_13524566_13524911_13526073_13526158_13526888_13526959_13527634_13527701_13528236_13528309_13530428_13530506_13538194_13538305_13549379
transcript_48988.nnic	chr2	-	1586	11	NNC	ENSMUSG00000026723.11	novel	3788	11	NA	NA	-35	-2097	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	14.6863882557966	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATGATCCTTAGAAAATTA	8994	False	NA	NA	False	TATAAA	-18	NA	13549514	13515921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_13516087_13516154_13516502_13520825_13520956_13521469_13521528_13524566_13524911_13526073_13526158_13526888_13526959_13527634_13527701_13530428_13530506_13538194_13538305_13549379
transcript_48994.nic	chr2	-	1595	10	NIC	ENSMUSG00000026723.11	novel	3788	11	NA	NA	-14	-2097	combination_of_known_junctions	FALSE	canonical	3	4	junction_9	11.4998658070539	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATGATCCTTAGAAAATTA	9015	False	NA	NA	False	TATAAA	-18	NA	13549493	13515921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_13516502_13520825_13520956_13521469_13521528_13524566_13524911_13526073_13526158_13526888_13526959_13527634_13527701_13528236_13528309_13530428_13530506_13549379
transcript_49.known	ERCC-00096	+	1091	1	FSM	ERCC-00096A	DQ459429	1091	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	118778	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00096_+_0_1100
transcript_4900.known	chr1	-	3179	24	FSM	ENSMUSG00000041406.15	ENSMUST00000045876.8	3179	24	0	0	0	0	multi-exon	TRUE	canonical	2	170	junction_8	40.7878461455702	223	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAGCTTACCAGCTTGAA	NA	False	NA	NA	False	AATAGA	-29	NA	163822365	163781322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_163781909_163782905_163783026_163784396_163784478_163785061_163785167_163786856_163786971_163788145_163788242_163789532_163789656_163792038_163792225_163792303_163792394_163793976_163794029_163794642_163794726_163795722_163795910_163799415_163799531_163799775_163799922_163804312_163804378_163805648_163805730_163810233_163810373_163811892_163811978_163813573_163813737_163814455_163814597_163815174_163815280_163817273_163817363_163818288_163818329_163822178
transcript_49000.known	chr2	+	2193	9	FSM	ENSMUSG00000026728.10	ENSMUST00000028062.8	2193	9	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_1	35.7786161694384	1127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGGTGTGTTATTTTA	10	False	NA	14	True	AATAAA	-14	NA	13578762	13587637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_13579806_13580351_13580413_13583223_13583320_13583399_13583562_13584231_13584358_13584828_13585050_13585450_13585495_13586423_13586510_13587283
transcript_49004.known	chr2	-	993	7	FSM	ENSMUSG00000063275.16	ENSMUST00000114753.8	993	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	46.8140529708287	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATTGCATTGTTTCTTGA	NA	False	NA	-2	True	AATAAA	-19	NA	14060831	14031641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_14031818_14040589_14040769_14045644_14045767_14049593_14049683_14049758_14049778_14049948_14050067_14060541
transcript_49005.known	chr2	-	871	6	FSM	ENSMUSG00000063275.16	ENSMUST00000091429.12	871	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	43.3340512761039	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATTGCATTGTTTCTTGA	NA	False	NA	-2	True	AATAAA	-19	NA	14060831	14031641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_14031818_14040589_14040769_14049593_14049683_14049758_14049778_14049948_14050067_14060541
transcript_49008.known	chr2	-	801	2	FSM	ENSMUSG00000086657.3	ENSMUST00000152524.2	801	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAATGGCATATTATAAT	NA	False	NA	NA	False	AATAAA	-16	NA	14078745	14075142	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_14075592_14078393
transcript_49010.known	chr2	-	1361	1	FSM	ENSMUSG00000086657.3	ENSMUST00000194771.2	1361	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAAAAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	14078659	14077298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_14077300_14078700
transcript_49011.known	chr2	+	5000	14	FSM	ENSMUSG00000026718.18	ENSMUST00000102960.11	5000	14	0	0	0	0	multi-exon	TRUE	canonical	3	181	junction_8	24.7443735759998	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATCTTTGTTTCTTTTTTC	4682	False	NA	NA	False	TATAAA	-17	NA	14078908	14154445	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_14079148_14107211_14107297_14120627_14120704_14120788_14120885_14122199_14122347_14133356_14133448_14133789_14133983_14135834_14135930_14139163_14139253_14142297_14142386_14142946_14143002_14143766_14143921_14146512_14146689_14151029
transcript_49021.known	chr2	-	433	1	FSM	ENSMUSG00000070271.8	ENSMUST00000117485.3	433	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	721	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACATCCCATGCACGGCT	NA	False	NA	NA	False	AATACA	-32	NA	14632132	14631699	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_14631700_14632100
transcript_49023.known	chr2	-	2897	11	FSM	ENSMUSG00000026707.16	ENSMUST00000028034.15	2897	11	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	8.53287759199674	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAATTTTGAAAAATATCAT	978	False	NA	NA	False	NA	NA	NA	15054091	14999941	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_15001358_15002977_15003104_15014220_15014370_15017950_15018096_15034839_15034960_15041085_15041168_15042884_15043039_15044543_15044654_15047037_15047118_15051958_15052115_15053732
transcript_49029.known	chr2	+	3608	6	FSM	ENSMUSG00000017418.15	ENSMUST00000239125.2	3608	6	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_3	13.7346277707115	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATCTTCTCAACATGTTA	4741	False	NA	NA	False	AAGAAA	-15	NA	15060133	15083977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_15060386_15072949_15073011_15074630_15074779_15077934_15078019_15079772_15079925_15081066
transcript_49031.known	chr2	+	1035	6	FSM	ENSMUSG00000017418.15	ENSMUST00000128682.9	1035	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	39.1989795785554	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCTGACATCTGAAGTTT	4705	False	NA	NA	False	NA	NA	NA	15060097	15081406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_15060386_15072949_15073011_15074668_15074779_15077934_15078019_15079772_15079925_15081066
transcript_49033.nic	chr2	-	1329	5	ISM	ENSMUSG00000026707.16	ENSMUST00000028034.15	2897	11	-57	42530	-25	-1226	5prime_fragment	FALSE	canonical	3	61	junction_4	7.69334127671456	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTCTCATTCTCATTTTA	921	False	NA	NA	False	AATAAA	-25	NA	15054148	15042471	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_15043039_15044543_15044654_15047037_15047118_15051958_15052115_15053732
transcript_49036.nnic	chr2	+	2847	15	NNC	ENSMUSG00000026748.14	novel	6947	14	NA	NA	-363	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	14.5140677711421	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTTTGGTTCAAATGTTC	3982	False	NA	14	True	AATAAA	-27	NA	16360751	16756500	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_16360983_16361295_16362049_16516832_16517045_16552927_16553075_16570146_16570217_16643397_16643521_16654919_16655039_16665584_16665685_16674304_16674401_16674633_16674716_16708127_16708195_16716892_16717041_16718480_16718520_16734063_16734225_16756001
transcript_49037.known	chr2	+	2146	14	FSM	ENSMUSG00000026748.14	ENSMUST00000114702.2	2146	14	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_10	16.8132801836092	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGACTATCAGCAGAAGGAT	511	False	NA	NA	False	NA	NA	NA	16361927	16756668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_16362049_16516832_16517045_16552927_16553075_16570146_16570217_16643397_16643521_16654919_16655039_16665584_16665685_16674304_16674401_16674633_16674716_16708127_16708189_16716892_16717041_16718480_16718520_16734063_16734225_16756001
transcript_49043.nnic	chr2	-	780	3	Genic_Genomic	ENSMUSG00000054057.3	novel	363	2	NA	NA	36	5599	multi-exon	FALSE	canonical	1	1	junction_2	3.5	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGAACTACAACTATCCTA	NA	False	NA	NA	False	NA	NA	NA	18033646	18024404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr2_-_18024617_18028048_18028201_18033230
transcript_49044.nnic	chr2	-	500	3	NNC	ENSMUSG00000054057.3	novel	363	2	NA	NA	25	5599	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	2.5	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGAACTACAACTATCCTA	NA	False	NA	NA	False	NA	NA	NA	18033657	18024404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_18024617_18028048_18028201_18033521
transcript_49046.nnic	chr2	+	741	2	Antisense	novelGene_ENSMUSG00000054057.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	0	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTACTTGTTTGAAGGC	4413	False	NA	NA	False	NA	NA	NA	18032378	18033222	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr2_+_18032675_18032777
transcript_49049.nnic	chr2	+	580	2	Antisense	novelGene_ENSMUSG00000054057.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	0	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTACTTGTTTGAAGGC	4428	False	NA	NA	False	NA	NA	NA	18032393	18033222	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr2_+_18032675_18032923
transcript_4906.known	chr1	+	4368	14	FSM	ENSMUSG00000026584.15	ENSMUST00000027876.11	4368	14	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_8	12.9505203112215	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGTGTTCTTGTCTGT	NA	False	NA	NA	False	AATAAA	-30	NA	163757333	163782695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_163757756_163761047_163761263_163762200_163762387_163763986_163764101_163766308_163766366_163767449_163767553_163768675_163768788_163771392_163771471_163772364_163772505_163773732_163773918_163776710_163776883_163778136_163778296_163779505_163780186_163780950
transcript_49062.nic	chr2	+	1025	8	ISM	ENSMUSG00000026743.17	ENSMUST00000114680.9	3543	23	-148	84741	-97	0	5prime_fragment	FALSE	canonical	3	88	junction_1	45.5299856340493	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGGATCCATCACTTA	4545	False	NA	NA	False	NA	NA	NA	18069349	18131040	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_18069676_18069845_18070006_18075935_18076016_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18130944
transcript_49063.nic	chr2	+	961	8	NIC	ENSMUSG00000026743.17	novel	3543	23	NA	NA	-59	0	combination_of_known_junctions	FALSE	canonical	3	102	junction_1	41.7318945221537	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGGATCCATCACTTA	4583	False	NA	NA	False	NA	NA	NA	18069387	18131040	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_18069650_18069845_18070006_18075935_18076016_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18130944
transcript_49067.known	chr2	+	825	7	FSM	ENSMUSG00000026743.17	ENSMUST00000154041.8	825	7	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	71.9639184283037	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGGATCCATCACTTA	4690	False	NA	NA	False	NA	NA	NA	18069494	18131040	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_18069676_18069845_18070006_18075935_18076016_18114592_18114703_18127055_18127160_18128529_18128624_18130944
transcript_49069.nic	chr2	+	906	7	NIC	ENSMUSG00000026743.17	novel	825	7	NA	NA	-59	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_3	69.7577156226384	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGGATCCATCACTTA	4583	False	NA	NA	False	NA	NA	NA	18069387	18131040	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_18069650_18069845_18070006_18075935_18076016_18114592_18114703_18127055_18127160_18128529_18128624_18130944
transcript_49075.nic	chr2	+	861	4	ISM	ENSMUSG00000026743.17	ENSMUST00000153279.2	651	6	-295	27086	-97	17550	5prime_fragment	FALSE	canonical	3	26	junction_3	72.0061725749181	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTCTGGCTTTTAATACA	4545	False	NA	NA	False	GATAAA	-14	NA	18069349	18087616	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_18069676_18069845_18070006_18075935_18076016_18087321
transcript_49076.nic	chr2	+	797	4	NIC	ENSMUSG00000026743.17	novel	651	6	NA	NA	-59	17550	combination_of_known_junctions	FALSE	canonical	3	26	junction_3	71.2242156073964	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTCTGGCTTTTAATACA	4583	False	NA	NA	False	GATAAA	-14	NA	18069387	18087616	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_18069650_18069845_18070006_18075935_18076016_18087321
transcript_49077.known	chr2	+	5063	24	FSM	ENSMUSG00000026743.17	ENSMUST00000114671.8	5063	24	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	74.1776083487481	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGCTCTGTGCCCTGCCTTC	4642	False	NA	12	True	AATAAA	-16	NA	18069446	18217199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_18069676_18069845_18070006_18075935_18076016_18097594_18097646_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18130944_18131041_18151587_18151684_18164266_18164523_18167127_18167698_18175064_18175110_18175853_18175887_18191028_18191208_18201393_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
transcript_49078.known	chr2	-	5497	12	FSM	ENSMUSG00000026740.13	ENSMUST00000166495.8	5497	12	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_5	8.9016666653772	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGTGTATGTATAATATT	NA	False	NA	NA	False	AATAAA	-21	NA	18397641	18218559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_18222137_18224261_18224711_18227523_18227573_18236514_18236635_18289433_18289598_18298764_18298856_18311783_18311878_18312725_18312824_18313594_18313761_18321168_18321216_18321709_18321812_18397101
transcript_49083.known	chr2	+	935	8	FSM	ENSMUSG00000051154.12	ENSMUST00000061158.5	935	8	0	0	0	0	multi-exon	FALSE	canonical	3	388	junction_2	22.7909756576714	2021	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTTTGGAGTTTGTGTG	60	False	NA	37	True	AATAAA	-31	NA	18677233	18681042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_18677415_18678705_18678818_18678935_18679000_18679091_18679127_18679466_18679528_18679619_18679677_18679760_18679821_18680677
transcript_49094.known	chr2	-	3477	10	FSM	ENSMUSG00000026737.13	ENSMUST00000006912.12	3477	10	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_7	14.3139403690559	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGCTTCTCTGTGCTGG	NA	False	NA	0	True	AATAAA	-21	NA	19002937	18847065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_18849272_18850685_18850790_18852244_18852489_18857623_18857738_18870922_18870962_18877094_18877242_18893862_18894016_18911039_18911137_18912865_18912964_19002662
transcript_49099.known	chr2	+	1196	5	FSM	ENSMUSG00000023094.15	ENSMUST00000023856.9	1196	5	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	15.0996688705415	752	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTGTCTCAGTCTGT	4784	False	NA	19	True	AATAAA	-20	NA	19376446	19399787	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_19376591_19382972_19383074_19388051_19388129_19398018_19398167_19399061
transcript_49109.nnic	chr2	+	970	4	NNC	ENSMUSG00000036617.18	novel	3074	4	NA	NA	-194	5916	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_3	82.3097132110718	140	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATGCCTTGGTTGTGATG	4602	False	NA	NA	False	NA	NA	NA	20524407	20673043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_20524739_20534769_20535054_20666708_20666908_20672887
transcript_49111.nnic	chr2	+	470	3	NNC	ENSMUSG00000036617.18	novel	2863	8	NA	NA	-61542	5916	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	7.5	41	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATGCCTTGGTTGTGATG	1425	False	NA	NA	False	NA	NA	NA	20656579	20673043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_20656695_20666708_20666908_20672887
transcript_49112.known	chr2	+	854	2	FSM	ENSMUSG00000075514.5	ENSMUST00000126967.2	854	2	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTTTGCTACAATTGCCT	3609	False	NA	NA	False	NA	NA	NA	20973864	20974808	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_20974195_20974284
transcript_49113.known	chr2	+	3899	3	FSM	ENSMUSG00000048550.18	ENSMUST00000054591.10	3899	3	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	4.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAAGAAAAAAATTATCC	4784	False	NA	NA	False	NA	NA	NA	21210534	21219820	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_21210657_21214695_21214853_21216200
transcript_49114.known	chr2	+	1679	3	FSM	ENSMUSG00000048550.18	ENSMUST00000102952.8	1679	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	24.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATCCACACAAAATGGTAA	4799	False	NA	NA	False	AAAACA	-14	NA	21210549	21219187	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_21210657_21214695_21214853_21217772
transcript_49116.nic	chr2	+	963	4	ISM	ENSMUSG00000026787.4	ENSMUST00000028123.4	5744	16	51	68807	51	-4934	5prime_fragment	FALSE	canonical	1	1	junction_2	0.942809041582063	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCTGCAATTTTCCTTT	NA	False	NA	NA	False	AATAAA	-12	NA	22512267	22515079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_22512751_22513447_22513508_22513700_22513851_22514809
transcript_49117.known	chr2	-	3403	10	FSM	ENSMUSG00000058835.15	ENSMUST00000140164.8	3403	10	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_4	62.0443887296789	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTTCTTAAAATGATTTT	NA	False	NA	-9	True	AATAAA	-25	NA	22930253	22830084	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_22832060_22836587_22836774_22840195_22840283_22843446_22843621_22847029_22847131_22850718_22850860_22852412_22852514_22861094_22861272_22884534_22884703_22929960
transcript_49118.known	chr2	-	3360	10	FSM	ENSMUSG00000058835.15	ENSMUST00000126112.8	3360	10	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_4	54.5400521080666	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTTCTTAAAATGATTTT	NA	False	NA	-9	True	AATAAA	-25	NA	22930207	22830084	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_22832060_22836587_22836774_22840195_22840283_22843446_22843624_22847029_22847131_22850718_22850860_22852412_22852514_22861094_22861272_22884534_22884703_22929960
transcript_49119.known	chr2	-	3023	11	FSM	ENSMUSG00000058835.15	ENSMUST00000091394.13	3023	11	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_8	121.126545397778	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGATATTGTTAAAGTAT	NA	False	NA	-2	True	AATAAA	-21	NA	22930149	22830375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_22832060_22836587_22836774_22840195_22840283_22843446_22843621_22847029_22847131_22850718_22850860_22852412_22852514_22853225_22853241_22861094_22861272_22884534_22884703_22929960
transcript_49120.known	chr2	-	2239	11	FSM	ENSMUSG00000058835.15	ENSMUST00000178908.2	2239	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	121.89257565578	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGATTTTGGCCTCTCCT	NA	False	NA	-5	True	TATAAA	-31	NA	22930231	22831244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_22832060_22836587_22836774_22840195_22840283_22843446_22843624_22847029_22847131_22850718_22850860_22852412_22852514_22861038_22861054_22861094_22861272_22884534_22884703_22929960
transcript_49126.known	chr2	+	1642	11	FSM	ENSMUSG00000026784.15	ENSMUST00000053729.14	1642	11	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_4	19.641792178923	733	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGTCTTTGTTTCAC	5608	False	NA	19	True	AATAAA	-21	NA	22785533	22830278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_22785775_22791292_22791358_22791764_22791886_22796806_22796938_22802611_22802754_22805213_22805326_22805426_22805537_22819551_22819633_22819755_22819870_22825570_22825652_22829834
transcript_4913.nic	chr1	+	1145	6	ISM	ENSMUSG00000026584.15	ENSMUST00000170359.8	4288	14	253	14801	238	-4535	5prime_fragment	FALSE	canonical	3	79	junction_2	14.0939703419583	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGCTTAAAGTTTCTTTA	NA	False	NA	NA	False	ATTAAA	-13	NA	163757611	163767878	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_163757756_163761047_163761263_163762200_163762387_163763986_163764101_163766308_163766366_163767449
transcript_49133.nnic	chr2	+	1574	10	NIC	ENSMUSG00000026784.15	novel	1642	11	NA	NA	-46	0	intron_retention	FALSE	canonical	3	31	junction_8	77.9635875755748	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGTCTTTGTTTCAC	5562	False	NA	19	True	AATAAA	-21	NA	22785487	22830278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_22785775_22791292_22791358_22791764_22791886_22796806_22796938_22802611_22802754_22805213_22805326_22805426_22805537_22819551_22819633_22825570_22825652_22829834
transcript_49143.known	chr2	+	1538	7	FSM	ENSMUSG00000026784.15	ENSMUST00000152170.8	1538	7	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_4	18.6696426199206	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCTCTGGTCCTCTTTAC	5681	False	NA	NA	False	ATTAAA	-17	NA	22785606	22806225	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_22785775_22791292_22791358_22791764_22791886_22796806_22796938_22802611_22802754_22805213_22805326_22805426
transcript_49145.known	chr2	+	1950	2	FSM	ENSMUSG00000026784.15	ENSMUST00000139472.2	1950	2	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAATTCAAGTGGTTTGT	613	False	NA	8	True	AATAAA	-10	NA	22824134	22830267	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_22825652_22829834
transcript_49146.known	chr2	+	352	4	FSM	ENSMUSG00000026784.15	ENSMUST00000135621.2	352	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	130.845965419904	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCTGGAGAGACTTGAAAG	5705	False	NA	NA	False	AATACA	-17	NA	22785630	22791842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_22785775_22789930_22789996_22791292_22791358_22791764
transcript_49147.known	chr2	+	3630	13	FSM	ENSMUSG00000026781.18	ENSMUST00000028121.15	3630	13	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	26.6993289553627	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTAACTGTATTGACTGTG	NA	False	NA	NA	False	AATAAA	-20	NA	22958179	23004525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_22958299_22959462_22959632_22965501_22965623_22968155_22968229_22970350_22970466_22977496_22977632_22979602_22979801_22980487_22980595_22984300_22984530_22989573_22989777_23000256_23000299_23000665_23000776_23002516
transcript_49149.known	chr2	+	1986	13	FSM	ENSMUSG00000026781.18	ENSMUST00000227809.2	1986	13	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	25.6850583457041	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAGAAAGAATGCAAAAAC	NA	False	NA	NA	False	ATTAAA	-2	NA	22958212	23002917	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_22958299_22959462_22959632_22965501_22965623_22968155_22968229_22970350_22970466_22977496_22977632_22979602_22979801_22980487_22980595_22984300_22984530_22989576_22989777_23000256_23000299_23000665_23000776_23002516
transcript_49152.known	chr2	+	3630	13	FSM	ENSMUSG00000026781.18	ENSMUST00000114529.10	3630	13	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	26.0302975182553	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTTAGAAATCGACAGCT	NA	False	NA	NA	False	ATTAAA	-11	NA	22959079	23004427	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_22959297_22959462_22959632_22965501_22965623_22968155_22968229_22970350_22970466_22977496_22977632_22979602_22979801_22980487_22980595_22984300_22984530_22989573_22989777_23000256_23000299_23000665_23000776_23002516
transcript_49153.known	chr2	+	3725	13	FSM	ENSMUSG00000026781.18	ENSMUST00000114526.9	3725	13	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	24.981103969912	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTAACTGTATTGACTGTG	NA	False	NA	NA	False	AATAAA	-20	NA	22959079	23004525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_22959297_22959462_22959632_22965501_22965623_22968155_22968229_22970350_22970466_22977496_22977632_22979602_22979801_22980487_22980595_22984300_22984530_22989576_22989777_23000256_23000299_23000665_23000776_23002516
transcript_49155.known	chr2	+	3632	12	FSM	ENSMUSG00000026781.18	ENSMUST00000114523.10	3632	12	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_8	21.9175766290267	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCTAACTGTATTGACT	NA	False	NA	NA	False	AATAAA	-17	NA	22959338	23004522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_22959632_22965501_22965623_22968155_22968229_22970350_22970466_22977496_22977632_22979602_22979801_22980487_22980595_22984300_22984530_22989573_22989777_23000256_23000299_23000665_23000776_23002516
transcript_49156.known	chr2	-	5590	12	FSM	ENSMUSG00000026779.7	ENSMUST00000028119.7	5590	12	0	0	0	0	multi-exon	TRUE	canonical	3	112	junction_2	17.5310821963508	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCTGTGGCTGTGAAGAA	NA	False	NA	NA	False	NA	NA	NA	23046036	23005617	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_23008605_23010468_23010571_23010904_23011019_23021691_23021831_23022636_23023744_23026882_23027056_23029919_23030068_23030510_23030618_23035375_23035465_23036053_23036194_23040999_23041138_23045690
transcript_4916.known	chr1	+	1513	2	FSM	ENSMUSG00000041396.14	ENSMUST00000045694.14	1513	2	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	0	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGACTGTTCAATTTCT	NA	False	NA	9	True	AATAAA	-16	NA	163822457	163824812	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_163822641_163823482
transcript_49161.known	chr2	-	1201	7	FSM	ENSMUSG00000026779.7	ENSMUST00000136207.2	1201	7	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_4	13.2759180473518	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTAGTTGTGATACTGG	NA	False	NA	NA	False	TATAAA	-16	NA	23045909	23026695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_23027056_23029919_23030068_23030510_23030618_23035375_23035465_23036053_23036194_23040999_23041138_23045690
transcript_49167.known	chr2	+	4707	19	FSM	ENSMUSG00000026775.10	ENSMUST00000028117.4	4707	19	0	0	0	0	multi-exon	TRUE	canonical	3	665	junction_5	65.7463325738674	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACATTCCAACTGAAGCAT	7073	False	NA	24	True	AATAAA	-26	NA	23046380	23089272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
transcript_4917.known	chr1	+	1419	2	FSM	ENSMUSG00000041396.14	ENSMUST00000111490.2	1419	2	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	0	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGACTGTTCAATTTCT	NA	False	NA	9	True	AATAAA	-16	NA	163822457	163824812	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_163822547_163823482
transcript_49182.known	chr2	+	2769	7	FSM	ENSMUSG00000026775.10	ENSMUST00000125004.8	2769	7	0	0	0	0	multi-exon	FALSE	canonical	3	665	junction_5	58.3430944214195	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAGGAAAAAAAAAAAAAA	7222	False	NA	NA	False	NA	NA	NA	23046529	23067080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180
transcript_49184.nnic	chr2	+	1556	6	NNC	ENSMUSG00000044103.5	novel	1648	5	NA	NA	-195	5651	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	1.93907194296653	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTAAAGTTCTTTCCAT	NA	False	NA	NA	False	ATTAAA	-34	NA	24076292	24089231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_24076561_24077170_24077314_24077712_24077821_24078633_24078774_24082598_24083298_24089033
transcript_49188.known	chr2	-	2560	12	FSM	ENSMUSG00000026976.16	ENSMUST00000028355.11	2560	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	0.899954085146515	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGGTTTTATCTTGGGA	NA	False	NA	NA	False	AATAAA	-14	NA	24365611	24310571	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_24311637_24312980_24313068_24319538_24319641_24325774_24325982_24326459_24326581_24330651_24330828_24331089_24331216_24331603_24331693_24332951_24333150_24334577_24334744_24365084_24365193_24365496
transcript_4919.known	chr1	+	3571	6	FSM	ENSMUSG00000040918.13	ENSMUST00000044021.12	3571	6	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_3	19.417517864032	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTATTTTGAGTTCATC	NA	False	NA	29	True	AATAAA	-31	NA	164076614	164092954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_164077026_164084315_164084919_164088360_164088587_164089615_164089809_164090188_164090331_164090958
transcript_49191.known	chr2	-	4615	27	FSM	ENSMUSG00000036893.18	ENSMUST00000091348.11	4615	27	0	0	0	0	multi-exon	TRUE	canonical	3	73	junction_26	45.6963867643122	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACGGTGCTGAATCTGGTG	9617	False	NA	NA	False	AATAAA	-16	NA	24809599	24681226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_24682143_24682292_24682469_24691518_24691598_24692032_24692120_24693025_24693142_24693954_24694033_24694771_24694917_24695085_24695254_24696225_24696381_24703538_24703644_24705742_24705845_24714956_24715080_24726407_24726515_24727587_24727671_24728712_24728881_24729541_24729769_24730647_24730792_24737955_24738102_24742676_24742815_24746617_24746739_24748184_24748263_24753234_24753424_24753783_24753921_24767466_24767639_24774157_24774715_24777014_24777079_24809565
transcript_49193.nnic	chr2	-	1265	8	NNC	ENSMUSG00000026972.16	novel	1666	8	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	26.6182383384945	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGCGAGTGGCTGGCCT	9357	False	NA	-31	True	AATAAA	-17	NA	24825224	24815363	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_24815689_24815767_24815846_24816283_24816461_24816556_24816740_24816889_24817045_24817137_24817189_24817740_24817852_24825039
transcript_49194.nnic	chr2	-	1297	8	NNC	ENSMUSG00000026972.16	novel	1666	8	NA	NA	32	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	26.9640728468419	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGCGAGTGGCTGGCCT	9349	False	NA	-31	True	AATAAA	-17	NA	24825232	24815363	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_24815689_24815767_24815870_24816283_24816461_24816556_24816740_24816889_24817045_24817137_24817189_24817740_24817852_24825039
transcript_49196.known	chr2	-	1574	8	FSM	ENSMUSG00000026972.16	ENSMUST00000102935.10	1574	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	27.9642629082191	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGCGAGTGGCTGGCCT	9406	False	NA	-31	True	AATAAA	-17	NA	24825175	24815363	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_24815689_24815767_24816207_24816283_24816458_24816556_24816740_24816889_24817045_24817137_24817189_24817740_24817852_24825039
transcript_49200.nnic	chr2	-	1658	8	NNC	ENSMUSG00000026972.16	novel	1666	8	NA	NA	26	1	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	24.7559516653499	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGGGCGAGTGGCTGGC	9343	False	NA	-33	True	AATAAA	-15	NA	24825238	24815365	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_24815709_24815767_24816207_24816283_24816461_24816556_24816740_24816889_24817045_24817137_24817189_24817740_24817852_24825039
transcript_49202.nic	chr2	-	1519	7	NIC	ENSMUSG00000026972.16	novel	1666	8	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_6	24.8445164976097	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGCGAGTGGCTGGCCT	9353	False	NA	-31	True	AATAAA	-17	NA	24825228	24815363	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_24815689_24815767_24816207_24816283_24816461_24816556_24816740_24816889_24817045_24817137_24817189_24825039
transcript_49205.nic	chr2	-	1796	7	NIC	ENSMUSG00000026972.16	novel	1666	8	NA	NA	-53	0	intron_retention	FALSE	canonical	3	75	junction_2	4.41273409829124	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGCGAGTGGCTGGCCT	9264	False	NA	-31	True	AATAAA	-17	NA	24825317	24815363	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_24815689_24815767_24816461_24816556_24816740_24816889_24817045_24817137_24817189_24817740_24817852_24825039
transcript_49213.known	chr2	-	1590	7	FSM	ENSMUSG00000026972.16	ENSMUST00000155953.8	1590	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	30.4940795711051	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTGGGCGAGTGGCTGG	9424	False	NA	-34	True	AATAAA	-14	NA	24825157	24815366	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_24815689_24815767_24816461_24816599_24816740_24816889_24817045_24817137_24817189_24817740_24817852_24825039
transcript_49214.known	chr2	+	3903	6	FSM	ENSMUSG00000026974.12	ENSMUST00000028350.9	3903	6	0	0	0	0	multi-exon	FALSE	canonical	3	842	junction_1	25.9028955910338	213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTAGTTTTTCGAGACAG	NA	False	NA	NA	False	NA	NA	NA	24839803	24852087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_24840060_24841484_24841545_24842597_24842705_24843247_24843389_24848047_24848229_24848929
transcript_49217.known	chr2	+	1666	9	FSM	ENSMUSG00000026975.11	ENSMUST00000028351.9	1666	9	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_3	22.9945645751338	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTATGCATCTGTCT	NA	False	NA	36	True	ATTAAA	-39	NA	24852411	24862175	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_24852638_24853034_24853169_24853467_24853556_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
transcript_49218.nnic	chr2	+	1357	9	NNC	ENSMUSG00000026975.11	novel	1666	9	NA	NA	3	-25	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	40.470475349321	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTTTAATTTTAGAAA	NA	False	NA	9	True	ATTAAA	-12	NA	24852414	24862148	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_24852638_24853034_24853169_24853467_24853556_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861813
transcript_49220.nic	chr2	+	1831	9	NIC	ENSMUSG00000026975.11	novel	1666	9	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	33.0924368247489	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTATGCATCTGTCT	NA	False	NA	36	True	ATTAAA	-39	NA	24852431	24862175	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_24852823_24853034_24853169_24853467_24853556_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
transcript_49223.known	chr2	+	1554	8	FSM	ENSMUSG00000026975.11	ENSMUST00000126909.8	1554	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	38.473950901346	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTATGTGTATGCATCTGT	NA	False	NA	34	True	ATTAAA	-37	NA	24852433	24862173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_24852638_24853034_24853169_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
transcript_49224.nnic	chr2	+	1269	8	NNC	ENSMUSG00000026975.11	novel	1554	8	NA	NA	3	-25	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	51.1045347243056	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTTTAATTTTAGAAA	NA	False	NA	9	True	ATTAAA	-12	NA	24852414	24862148	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_24852638_24853034_24853169_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861813
transcript_49225.nic	chr2	+	1743	8	NIC	ENSMUSG00000026975.11	novel	1666	9	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_2	45.1758468969553	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTATGCATCTGTCT	NA	False	NA	36	True	ATTAAA	-39	NA	24852431	24862175	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_24852823_24853034_24853169_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
transcript_49228.nic	chr2	+	1457	7	NIC	ENSMUSG00000026975.11	novel	1666	9	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	41.9076365356005	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTATGCATCTGTCT	NA	False	NA	36	True	ATTAAA	-39	NA	24852401	24862175	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_24852638_24855568_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
transcript_4923.known	chr1	+	1909	6	FSM	ENSMUSG00000026578.7	ENSMUST00000027867.7	1909	6	0	0	0	0	multi-exon	FALSE	canonical	2	28	junction_1	8.97552226892675	186	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGTGTCATCTTGTAG	NA	False	NA	20	True	AATAAA	-20	NA	164103153	164115416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_164103331_164105742_164105884_164107435_164108384_164109959_164110107_164113809_164113965_164115075
transcript_49230.nnic	chr2	+	1604	7	NIC	ENSMUSG00000026975.11	novel	2296	7	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	44.02556075736	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTATGCATCTGTCT	NA	False	NA	36	True	ATTAAA	-39	NA	24852436	24862175	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_24852823_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
transcript_49238.known	chr2	+	2296	7	FSM	ENSMUSG00000026975.11	ENSMUST00000146382.8	2296	7	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	23.8379948821204	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTATGCATCTGTCT	NA	False	NA	36	True	ATTAAA	-39	NA	24852477	24862175	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_24853556_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
transcript_49239.known	chr2	-	776	2	FSM	ENSMUSG00000036850.5	ENSMUST00000045604.4	776	2	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_1	0	3811	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTGTTTTGAATCAAGT	NA	False	NA	-3	True	ATTAAA	-21	NA	24865110	24864128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_24864694_24864899
transcript_49240.known	chr2	+	4574	35	FSM	ENSMUSG00000036833.17	ENSMUST00000045295.14	4574	35	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	7.94602248652754	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGCTATTTTACTCTG	NA	False	NA	10	True	AATAAA	-13	NA	24866044	24944069	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_24866326_24870045_24870121_24870214_24870303_24870724_24870805_24871788_24871881_24872043_24872185_24873501_24873662_24877130_24877212_24885289_24885419_24886168_24886250_24887238_24887363_24888633_24888772_24892626_24892728_24892900_24893045_24900725_24900804_24901517_24901724_24905161_24905294_24906518_24906643_24909415_24909530_24911953_24912024_24919518_24919669_24928848_24928913_24929614_24929784_24930957_24931141_24932100_24932220_24937619_24937777_24940010_24940128_24940269_24940340_24940866_24940984_24941612_24941762_24942043_24942197_24942319_24942431_24942564_24942650_24943406_24943511_24943682
transcript_49242.known	chr2	+	483	1	FSM	ENSMUSG00000084383.2	ENSMUST00000121309.2	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26336	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTACACAAAGAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	24875995	24876478	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_24876000_24876500
transcript_49244.known	chr2	-	2637	13	FSM	ENSMUSG00000013465.20	ENSMUST00000059849.15	2637	13	0	0	0	0	multi-exon	TRUE	canonical	3	539	junction_7	54.5501807716732	495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGAGGAATCTGTTTGTC	NA	False	NA	NA	False	AATAAA	-20	NA	25101501	25089723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_25090479_25090670_25090780_25091056_25091199_25093152_25093260_25093359_25093503_25093898_25093995_25094209_25094313_25095138_25095252_25096171_25096358_25099865_25100097_25100449_25100550_25100720_25100885_25101113
transcript_49245.known	chr2	-	2754	12	FSM	ENSMUSG00000013465.20	ENSMUST00000128876.8	2754	12	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_7	56.9757089026427	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATGGTGAGGAATCTGTT	NA	False	NA	NA	False	AATAAA	-16	NA	25101393	25089727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_25090479_25090670_25090780_25091056_25091199_25093152_25093260_25093359_25093503_25093898_25093995_25094209_25094313_25095138_25095252_25096171_25096358_25099865_25100097_25100449_25100550_25100720
transcript_49246.known	chr2	-	1329	2	FSM	ENSMUSG00000036770.12	ENSMUST00000155706.2	1329	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATGTGTATGGTGTTTT	NA	False	NA	NA	False	ACTAAA	-19	NA	25103663	25102218	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_25103185_25103300
transcript_49250.known	chr2	-	1598	4	FSM	ENSMUSG00000036752.5	ENSMUST00000043584.5	1598	4	0	0	0	0	multi-exon	FALSE	canonical	3	1343	junction_2	25.8499946271217	8799	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCGCCTGTCCAATTCCT	NA	False	NA	-24	True	ATTAAA	-18	NA	25114714	25112171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_25113381_25113945_25114057_25114135_25114245_25114545
transcript_49251.nic	chr2	-	1205	5	ISM	ENSMUSG00000006469.14	ENSMUST00000006638.8	2183	13	2965	0	1647	0	3prime_fragment	FALSE	canonical	2	3	junction_2	0.866025403784439	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGAGTGTTGGCTTTCTCTC	NA	False	NA	NA	False	AATAAA	-15	NA	25121411	25118909	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_25119528_25120584_25120710_25120784_25120902_25120987_25121156_25121234
transcript_49253.known	chr2	-	2021	2	FSM	ENSMUSG00000089953.4	ENSMUST00000091318.5	2021	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGTGGCTGCAGTGTCTA	NA	False	NA	NA	False	ATTAAA	-15	NA	25126799	25124487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_25126353_25126643
transcript_49254.known	chr2	-	873	2	FSM	ENSMUSG00000036731.8	ENSMUST00000043379.5	873	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTTGTTTTGTTTTG	NA	False	NA	NA	False	AATAAA	-25	NA	25130000	25128829	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_25129519_25129816
transcript_49256.known	chr2	-	2336	14	FSM	ENSMUSG00000006471.19	ENSMUST00000114349.9	2336	14	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_3	18.4333117547694	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTAGCCGCTCACTTCTC	NA	False	NA	-6	True	CATAAA	-16	NA	25145421	25137240	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_25137867_25137971_25138067_25138133_25138253_25138347_25138498_25138643_25138759_25138916_25139025_25139111_25139333_25139416_25139539_25139805_25140016_25140107_25140210_25140291_25140391_25141732_25141831_25144875_25144954_25145228
transcript_49266.known	chr2	-	2045	1	FSM	ENSMUSG00000115018.3	ENSMUST00000228627.3	2045	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTACCTCTGCCATCCTC	NA	False	NA	NA	False	AATAAA	-19	NA	25136875	25134830	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_25134800_25136900
transcript_49267.known	chr2	+	854	1	FSM	ENSMUSG00000078201.6	ENSMUST00000104998.5	854	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	435	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGCTCTGAATTGCCAG	NA	False	NA	6	True	ATTAAA	-16	NA	25145450	25146304	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_25145400_25146300
transcript_49268.known	chr2	+	2787	4	FSM	ENSMUSG00000048707.10	ENSMUST00000114336.4	2787	4	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	10.4986771653491	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTTTTGCCTTCTTTAC	NA	False	NA	14	True	AATAAA	-16	NA	25152629	25159897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_25154566_25158843_25159058_25159144_25159252_25159367
transcript_49271.known	chr2	-	845	3	FSM	ENSMUSG00000026966.7	ENSMUST00000133697.2	845	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	398.5	566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTCTGCTAGCTACCA	NA	False	NA	-6	True	AATAAA	-16	NA	25162422	25161050	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_25161594_25161940_25162141_25162320
transcript_49272.known	chr2	-	1006	2	FSM	ENSMUSG00000026966.7	ENSMUST00000141470.2	1006	2	0	0	0	0	multi-exon	FALSE	canonical	3	843	junction_1	0	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATCCCCATGGCCTCTGG	NA	False	NA	-53	True	AAGAAA	-32	NA	25162450	25161097	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_25161594_25161940
transcript_49277.known	chr2	+	3004	13	FSM	ENSMUSG00000026965.13	ENSMUST00000028341.11	3004	13	0	0	0	0	multi-exon	FALSE	canonical	3	410	junction_2	48.8355374929182	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGTGTGTGGCATCTGTG	NA	False	NA	18	True	ATTAAA	-19	NA	25162489	25175927	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_25162690_25162926_25163550_25163811_25163945_25164677_25164853_25166327_25166448_25167647_25167766_25168335_25168518_25169183_25169326_25170138_25170215_25170294_25170499_25174573_25174704_25174948_25175185_25175262
transcript_49283.nic	chr2	+	2981	12	NIC	ENSMUSG00000026965.13	novel	3004	13	NA	NA	-24	-309	intron_retention	TRUE	canonical	3	416	junction_6	46.7767689745934	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCATGTATTTTGTTGGA	NA	False	NA	29	True	ATTAAA	-16	NA	25162465	25175618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_25162690_25162926_25163945_25164677_25164853_25166327_25166448_25167647_25167766_25168335_25168518_25169183_25169326_25170138_25170215_25170294_25170499_25174573_25174704_25174948_25175185_25175262
transcript_49292.known	chr2	+	3755	13	FSM	ENSMUSG00000036646.14	ENSMUST00000042390.5	3755	13	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_8	34.4394597647653	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTGCAGTGTTACTTT	3965	False	NA	33	True	ATTAAA	-21	NA	25222740	25242224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_25222989_25223446_25223556_25224388_25224505_25228124_25228280_25231618_25231729_25233235_25233422_25234979_25235129_25235417_25235607_25238047_25238239_25238582_25238704_25239181_25239380_25239462_25239595_25240373
transcript_49294.nic	chr2	+	1228	5	ISM	ENSMUSG00000036646.14	ENSMUST00000149464.8	2030	6	-26	2335	7	-1067	5prime_fragment	FALSE	canonical	3	358	junction_4	24.7285260377565	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGATTCAATCCAAGTA	3972	False	NA	NA	False	NA	NA	NA	25222747	25232225	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_25222989_25223446_25223556_25224388_25224505_25228124_25228280_25231618
transcript_49299.known	chr2	-	1682	13	FSM	ENSMUSG00000026958.14	ENSMUST00000028332.8	1682	13	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_10	27.0014145719977	1100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTCTAGTAGGATCCATG	9001	False	NA	-17	True	AATAAA	-17	NA	25246371	25242301	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_25242579_25242697_25242769_25243164_25243230_25243371_25243529_25243619_25243739_25244244_25244306_25244479_25244647_25244752_25244835_25244904_25245041_25245569_25245734_25245825_25245966_25246040_25246155_25246242
transcript_49300.known	chr2	-	2167	10	FSM	ENSMUSG00000026958.14	ENSMUST00000139108.8	2167	10	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_4	80.8125402809902	374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCATGCATGGAAGGATGAG	9015	False	NA	-3	True	AATAAA	-31	NA	25246357	25242287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_25242579_25242697_25242769_25243164_25243230_25243371_25243529_25244244_25244306_25244479_25244647_25244752_25244835_25244904_25245734_25245825_25246155_25246242
transcript_49302.known	chr2	-	3349	9	FSM	ENSMUSG00000026956.16	ENSMUST00000102925.4	3349	9	0	0	0	0	multi-exon	FALSE	canonical	3	362	junction_3	36.5288841192829	1156	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGGAGTCCACGTGGTGA	NA	False	NA	NA	False	GATAAA	-18	NA	25255694	25249900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_25251752_25252082_25252150_25252674_25252861_25253255_25253397_25253817_25254012_25254112_25254286_25254523_25254700_25254892_25255098_25255338
transcript_49311.known	chr2	+	3121	7	FSM	ENSMUSG00000026955.14	ENSMUST00000028329.13	3121	7	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_3	10.077477638554	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTAGGCCCTATTTAAAT	6657	False	NA	NA	False	AATAGA	-14	NA	25262332	25268225	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_25263011_25263427_25263530_25264963_25265077_25265696_25265844_25265979_25266088_25266175_25266287_25266363
transcript_49319.known	chr2	+	1600	6	FSM	ENSMUSG00000026955.14	ENSMUST00000114293.9	1600	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	40.9536323175369	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGCTGTATTTCTCATAA	6666	False	NA	6	True	AGTAAA	-15	NA	25262341	25266815	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_25263011_25264963_25265077_25265696_25265844_25265979_25266088_25266175_25266287_25266363
transcript_4932.known	chr1	+	1740	14	FSM	ENSMUSG00000026575.16	ENSMUST00000193683.6	1740	14	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_2	20.0017750691572	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTTTGGTTTTATTTCA	NA	False	NA	NA	False	AATAAA	-20	NA	164135240	164264869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_164135324_164135628_164135820_164140421_164140508_164155861_164155970_164160180_164160348_164168297_164168409_164170782_164170834_164172787_164172996_164175342_164175449_164206927_164206993_164208209_164208279_164213268_164213371_164230538_164230647_164264584
transcript_49321.known	chr2	+	1935	9	FSM	ENSMUSG00000015085.9	ENSMUST00000028328.3	1935	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1.69096865730859	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGTGTCCATAGGGTGG	NA	False	NA	NA	False	AATAAA	-19	NA	25285885	25291333	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_25286102_25287407_25287526_25288012_25288164_25288302_25288463_25288543_25288772_25289293_25289549_25289628_25289749_25290575_25290711_25290781
transcript_49323.known	chr2	+	1485	9	FSM	ENSMUSG00000015094.17	ENSMUST00000071442.12	1485	9	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	4.24264068711928	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTTCTGGGTTCACTGA	3126	False	NA	12	True	ATTAAA	-20	NA	25293082	25299506	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_25293378_25296226_25296374_25297607_25297749_25297852_25298027_25298125_25298193_25298271_25298360_25298618_25298699_25298916_25299014_25299110
transcript_49329.nic	chr2	+	804	2	ISM	ENSMUSG00000015094.17	ENSMUST00000124277.2	738	5	1096	5019	-22	-5019	internal_fragment	FALSE	canonical	2	7	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGTGTCCATAGGGTGG	502	False	NA	NA	False	AATAAA	-19	NA	25290458	25291333	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_25290711_25290781
transcript_49330.known	chr2	-	981	7	FSM	ENSMUSG00000047617.12	ENSMUST00000114261.9	981	7	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_6	3.94405318873308	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAGTTGTGAAGATTGGC	5236	False	NA	-4	True	AATAAA	-32	NA	25351106	25349493	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_25349714_25349786_25349872_25350020_25350087_25350178_25350370_25350456_25350507_25350666_25350728_25350798
transcript_49332.known	chr2	-	917	6	FSM	ENSMUSG00000047617.12	ENSMUST00000125710.8	917	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	2.82842712474619	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCTCCGTCAAATAAACT	5322	False	NA	-53	True	NA	NA	NA	25351020	25349542	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_25349714_25349786_25349872_25350020_25350087_25350178_25350370_25350456_25350507_25350666
transcript_49333.known	chr2	-	896	6	FSM	ENSMUSG00000047617.12	ENSMUST00000135915.8	896	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	6.01331855134916	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTGAGTTGTGAAGATTG	5258	False	NA	-6	True	AATAAA	-30	NA	25351084	25349495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_25349714_25349786_25349872_25350020_25350087_25350178_25350370_25350456_25350507_25350798
transcript_49334.nic	chr2	-	1067	6	NIC	ENSMUSG00000047617.12	novel	917	6	NA	NA	17	0	intron_retention	FALSE	canonical	1	1	junction_2	5.9194594347795	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTGAGTTGTGAAGATTG	5275	False	NA	-6	True	AATAAA	-30	NA	25351067	25349495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_25349714_25349786_25349928_25350020_25350087_25350178_25350370_25350456_25350507_25350666
transcript_49338.known	chr2	+	808	6	FSM	ENSMUSG00000015093.16	ENSMUST00000114265.9	808	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.46969384566991	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATTGTGTCCTGAACGTC	572	False	NA	NA	False	CATAAA	-16	NA	25346849	25348788	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_25346927_25347672_25347783_25347860_25347987_25348126_25348234_25348315_25348492_25348576
transcript_49339.known	chr2	-	775	7	FSM	ENSMUSG00000015090.14	ENSMUST00000114259.3	775	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.71558280160133	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGCTTTTGTCTGTCTG	5892	False	NA	1	True	AATAAA	-19	NA	25359761	25356720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_25356844_25357331_25357358_25357829_25357932_25358083_25358201_25358844_25358922_25358999_25359140_25359571
transcript_4934.nic	chr1	+	1805	14	NIC	ENSMUSG00000026575.16	novel	1740	14	NA	NA	-68	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_2	27.275061761302	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTTTGGTTTTATTTCA	NA	False	NA	NA	False	AATAAA	-20	NA	164135172	164264869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_164135324_164135628_164135820_164140424_164140508_164155861_164155970_164160180_164160348_164168297_164168409_164170782_164170834_164172787_164172996_164175342_164175449_164206927_164206993_164208209_164208279_164213268_164213371_164230538_164230647_164264584
transcript_49340.known	chr2	-	901	7	FSM	ENSMUSG00000015090.14	ENSMUST00000015234.13	901	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	3.09569593683445	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGCTTTTGTCTGTCTG	5799	False	NA	1	True	AATAAA	-19	NA	25359854	25356720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_25356844_25357298_25357358_25357829_25357932_25358083_25358201_25358844_25358922_25358999_25359140_25359571
transcript_49342.known	chr2	-	645	6	FSM	ENSMUSG00000015090.14	ENSMUST00000137417.2	645	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	2.57681974534503	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATCTTTGCTTTTGTCTGT	6484	False	NA	-2	True	AATAAA	-16	NA	25359169	25356723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_25356844_25357298_25357358_25357829_25357932_25358083_25358201_25358844_25358922_25358999
transcript_49345.known	chr2	+	2388	9	FSM	ENSMUSG00000015095.13	ENSMUST00000015239.10	2388	9	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_1	35.5176012703561	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCCATCTAGTCTGTTTG	NA	False	NA	16	True	AATAAA	-16	NA	25390761	25395483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_25390899_25391947_25392164_25392412_25392571_25392882_25393058_25393136_25393286_25393448_25393879_25394191_25394340_25394428_25394642_25394721
transcript_49347.known	chr2	-	1150	7	FSM	ENSMUSG00000015083.12	ENSMUST00000040042.11	1150	7	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	2.38047614284762	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTTTGTCGTTTTTTGTC	NA	False	NA	-1	True	ATTAAA	-19	NA	25390625	25388662	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_25388836_25388916_25388956_25389025_25389128_25389409_25389518_25389600_25389672_25389850_25389988_25390105
transcript_49348.known	chr2	-	822	7	FSM	ENSMUSG00000015083.12	ENSMUST00000015227.4	822	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	5.31245915016974	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTTTGTCGTTTTTTGTC	NA	False	NA	-1	True	ATTAAA	-19	NA	25391731	25388662	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_25388836_25388916_25388956_25389025_25389128_25389409_25389518_25389600_25389672_25389850_25389988_25391539
transcript_49349.known	chr2	-	2151	11	FSM	ENSMUSG00000026942.14	ENSMUST00000114234.2	2151	11	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_9	38.6141165896619	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTGAGTGGTGTTCATC	NA	False	NA	-18	True	ATTAAA	-13	NA	25436922	25408877	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_25409641_25410339_25410489_25414351_25414530_25414878_25415161_25417485_25417561_25418243_25418319_25420298_25420461_25426687_25426787_25427082_25427162_25428856_25429097_25436873
transcript_49350.known	chr2	-	3044	11	FSM	ENSMUSG00000026942.14	ENSMUST00000028311.13	3044	11	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_10	20.6164982477626	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTTGGTTGTATTTGAC	NA	False	NA	NA	False	NA	NA	NA	25436952	25407993	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_25409641_25410339_25410489_25414351_25414530_25414878_25415161_25417485_25417561_25418243_25418319_25420298_25420461_25426687_25426787_25427082_25427162_25428877_25429097_25436873
transcript_49353.known	chr2	+	722	5	FSM	ENSMUSG00000015092.10	ENSMUST00000015236.4	722	5	0	0	0	0	multi-exon	FALSE	canonical	3	2396	junction_4	232.166965781095	19211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCTCCTGGATTTTTCCT	NA	False	NA	17	True	NA	NA	NA	25447858	25452094	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_25448042_25450162_25450215_25450551_25450713_25450980_25451075_25451862
transcript_49354.known	chr2	+	765	4	FSM	ENSMUSG00000015092.10	ENSMUST00000153008.8	765	4	0	0	0	0	multi-exon	FALSE	canonical	3	2578	junction_3	170.755836080515	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTCTTCTCATCTTTT	NA	False	NA	NA	False	NA	NA	NA	25447882	25451373	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_25448042_25450162_25450215_25450551_25450713_25450980
transcript_49359.known	chr2	-	656	3	FSM	ENSMUSG00000036504.7	ENSMUST00000147096.2	656	3	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	365.5	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCACCTGCCAGGCCTTA	5546	False	NA	-80	True	GGGGCT	-34	NA	25464890	25463513	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_25463712_25464199_25464462_25464694
transcript_49362.known	chr2	-	937	3	FSM	ENSMUSG00000036504.7	ENSMUST00000039156.7	937	3	0	0	0	0	multi-exon	FALSE	canonical	3	774	junction_2	2.5	8030	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCTGACTTGTGTCTTGC	5200	False	NA	-8	True	ATTAAA	-20	NA	25465236	25463441	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_25463712_25464199_25464325_25464694
transcript_49365.known	chr2	-	795	5	FSM	ENSMUSG00000026939.13	ENSMUST00000142087.2	795	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	9.85837207656518	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGTTCTGTGGGTGAAGC	NA	False	NA	31	True	ATTAAA	-14	NA	25512017	25510078	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_25510543_25511077_25511186_25511386_25511471_25511619_25511687_25511945
transcript_49366.nnic	chr2	-	876	5	NNC	ENSMUSG00000026939.13	novel	975	4	NA	NA	-37	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_4	17.3403431338598	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTGAGCTCTGAAGCAAT	NA	False	NA	-6	True	AATAAA	-18	NA	25512054	25510115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_25510543_25511077_25511186_25511386_25511471_25511619_25511768_25511945
transcript_49369.nic	chr2	-	1002	4	NIC	ENSMUSG00000026939.13	novel	795	5	NA	NA	-43	0	intron_retention	FALSE	canonical	3	29	junction_3	9.56846672960488	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTGAGCTCTGAAGCAAT	NA	False	NA	-6	True	AATAAA	-18	NA	25512060	25510115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_25510543_25511077_25511471_25511619_25511687_25511945
transcript_49370.known	chr2	+	983	1	FSM	ENSMUSG00000049086.9	ENSMUST00000061483.9	983	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	208	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGATTCTTTTTTATTGTT	NA	False	NA	27	True	TATAAA	-23	NA	25596750	25597733	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_25596800_25597700
transcript_49371.known	chr2	-	1289	8	FSM	ENSMUSG00000059625.7	ENSMUST00000076989.7	1289	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	2.18529407725405	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCCTGGCTTTTGAGTAA	NA	False	NA	NA	False	ATTAAA	-32	NA	25737260	25733006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_25733372_25733935_25734013_25734497_25734685_25735273_25735408_25735664_25735790_25736220_25736369_25736729_25736865_25737142
transcript_49376.known	chr2	-	1852	10	FSM	ENSMUSG00000036352.17	ENSMUST00000036509.14	1852	10	0	0	0	0	multi-exon	FALSE	canonical	3	686	junction_2	68.2632884002073	158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTGTGTTACTTCATGGC	NA	False	NA	-3	True	AATAAA	-20	NA	25911759	25888554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_25889080_25895337_25895477_25896538_25896626_25897730_25897966_25898872_25898982_25899172_25899276_25900533_25900642_25904903_25904978_25906307_25906429_25911408
transcript_49381.known	chr2	+	977	4	FSM	ENSMUSG00000026930.16	ENSMUST00000147873.8	977	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	7.25718035235908	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCCTGCCCTAGGCCGGG	NA	False	NA	NA	False	NA	NA	NA	26232300	26237287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_26232443_26234613_26234771_26235162_26235372_26236818
transcript_49383.known	chr2	-	2766	2	FSM	ENSMUSG00000075467.5	ENSMUST00000125848.2	2766	2	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	0	503	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGCGGGGCGGCCACCAT	NA	False	NA	NA	False	AATAAA	-18	NA	26242112	26238132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_26240571_26241784
transcript_49384.known	chr2	-	4363	23	FSM	ENSMUSG00000036281.14	ENSMUST00000035427.11	4363	23	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_10	11.6217948571845	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGCAATGTATAGCCTT	NA	False	NA	-12	True	AATAAA	-22	NA	26270665	26252785	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_26253033_26253649_26253781_26254631_26256050_26256420_26256449_26257202_26257314_26257746_26257818_26258155_26258421_26259150_26259625_26259923_26260004_26260797_26260893_26262742_26262838_26262985_26263093_26263330_26263479_26264032_26264198_26264503_26264577_26264654_26264760_26265619_26265702_26266166_26266246_26266611_26266738_26266880_26267049_26268032_26268080_26268505_26268649_26270560
transcript_49385.nic	chr2	-	1252	10	ISM	ENSMUSG00000036281.14	ENSMUST00000035427.11	4363	23	7	11081	3	-293	5prime_fragment	FALSE	canonical	3	45	junction_4	8.22072058359729	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTCTTTCATCTTTTT	NA	False	NA	NA	False	AAGAAA	-1	NA	26270658	26263866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_26264198_26264503_26264577_26264654_26264760_26265619_26265702_26266166_26266246_26266611_26266738_26266880_26267049_26268032_26268080_26268505_26268649_26270560
transcript_49387.known	chr2	-	516	2	FSM	ENSMUSG00000026928.15	ENSMUST00000153370.2	516	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTTGGTTGGATATGCA	NA	False	NA	NA	False	AATAAA	-17	NA	26242787	26242198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_26242424_26242496
transcript_49388.known	chr2	-	1880	13	FSM	ENSMUSG00000026928.15	ENSMUST00000028294.7	1880	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	11.0789465002569	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTTGGTTGGATATGCA	NA	False	NA	NA	False	AATAAA	-17	NA	26250930	26242198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_26242424_26242496_26242574_26242952_26243027_26244368_26244418_26244841_26244884_26245344_26245537_26246769_26246896_26247196_26247341_26247476_26247657_26247722_26248028_26248825_26248964_26249375_26249572_26250798
transcript_49389.known	chr2	-	2031	9	FSM	ENSMUSG00000026927.18	ENSMUST00000028293.12	2031	9	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_8	70.8147892392543	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGACTGTCTTGTCATTT	NA	False	NA	-3	True	AATAAA	-13	NA	26279316	26272813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_26273707_26274693_26274834_26275094_26275158_26275509_26275622_26276001_26276076_26276915_26277324_26277567_26277684_26278503_26278573_26279160
transcript_49390.known	chr2	-	1955	8	FSM	ENSMUSG00000026927.18	ENSMUST00000077983.13	1955	8	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_7	82.5556089640708	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGACTGTCTTGTCATTT	NA	False	NA	-3	True	AATAAA	-13	NA	26279309	26272813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_26273707_26274693_26274834_26275094_26275158_26275509_26275622_26276001_26276076_26276915_26277324_26277567_26277684_26279160
transcript_49392.nic	chr2	-	1269	3	ISM	ENSMUSG00000026927.18	ENSMUST00000136972.2	403	4	291	-762	-105	0	3prime_fragment	FALSE	canonical	3	366	junction_2	15	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGACTGTCTTGTCATTT	NA	False	NA	-3	True	AATAAA	-13	NA	26275330	26272813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_26273707_26274693_26274834_26275094
transcript_49393.known	chr2	+	3135	13	FSM	ENSMUSG00000026926.15	ENSMUST00000076431.13	3135	13	0	0	0	0	multi-exon	FALSE	canonical	3	1351	junction_8	105.114619979018	1026	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGATGCCCCTAGGTGT	644	False	NA	19	True	AATAAA	-16	NA	26279350	26287134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430
transcript_49397.known	chr2	+	1638	11	FSM	ENSMUSG00000026926.15	ENSMUST00000114093.2	1638	11	0	0	0	0	multi-exon	FALSE	canonical	3	1351	junction_8	100.774054200474	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTGCCTGGCTGTCTTTT	653	False	NA	NA	False	NA	NA	NA	26279359	26283953	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529
transcript_49400.known	chr2	-	4147	10	FSM	ENSMUSG00000026925.17	ENSMUST00000145701.8	4147	10	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	7.99228022593531	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCATGGTGACTCTTACT	986	False	NA	NA	False	ATTAAA	-31	NA	26299212	26286260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_26287984_26288567_26288705_26289244_26289361_26289424_26289587_26290047_26290156_26290384_26290505_26290897_26291023_26291612_26291711_26292111_26292236_26297778
transcript_49403.known	chr2	+	439	2	FSM	ENSMUSG00000026926.15	ENSMUST00000135155.2	439	2	0	0	0	0	multi-exon	FALSE	canonical	3	1702	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGGCATTTTCGGTCAG	659	False	NA	NA	False	NA	NA	NA	26279365	26280307	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_26279445_26279947
transcript_49404.known	chr2	-	8737	30	FSM	ENSMUSG00000026924.18	ENSMUST00000091252.5	8737	30	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_2	23.0104665219992	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTATGGCTTCCTTTGTG	NA	False	NA	-2	True	AATAAA	-25	NA	26335228	26299444	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_26300966_26302847_26302926_26304382_26304458_26305318_26305414_26305645_26305784_26306128_26306241_26306382_26306440_26306645_26306724_26309632_26309783_26311385_26311469_26312019_26312266_26313465_26313650_26313894_26314009_26314428_26314570_26315205_26315312_26315487_26315600_26315778_26315897_26316091_26316174_26316462_26316561_26318151_26318398_26318826_26318966_26319073_26319136_26319385_26319529_26320088_26320264_26320405_26320605_26321116_26321241_26323342_26323441_26325923_26326061_26328398_26332083_26335086
transcript_49406.known	chr2	+	600	2	FSM	ENSMUSG00000086714.2	ENSMUST00000151521.2	600	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGCATGTAGTTTTTTT	5502	False	NA	NA	False	AATACA	-19	NA	26335935	26348007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_26336213_26347684
transcript_49415.known	chr2	+	1163	9	FSM	ENSMUSG00000026921.21	ENSMUST00000239075.2	1163	9	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	46.4239970273995	996	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTTGTCAATGGGGGAA	172	False	NA	12	True	AATAAA	-12	NA	26476641	26482693	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_26476694_26479056_26479182_26479341_26479459_26480391_26480508_26480668_26480765_26480910_26481076_26481675_26481741_26482129_26482293_26482429
transcript_49448.nic	chr2	-	1456	6	NIC	ENSMUSG00000026922.14	novel	1273	6	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	216	junction_5	206.37577377202	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTAGAGTTCTTTCTCC	9881	False	NA	1	True	TATAAA	-45	NA	26493944	26483068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_26483775_26484791_26484865_26486091_26486188_26486302_26486479_26487215_26487350_26493673
transcript_4945.known	chr1	+	687	6	FSM	ENSMUSG00000026575.16	ENSMUST00000192710.2	687	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	52.9550752997293	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAACAAGTGACTTTGGTT	7384	False	NA	NA	False	AATAAA	-12	NA	164200837	164264861	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_164200904_164206927_164206993_164208209_164208279_164213268_164213371_164230538_164230647_164264584
transcript_49452.known	chr2	-	1273	6	FSM	ENSMUSG00000026922.14	ENSMUST00000131940.8	1273	6	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_5	210.357219985433	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTAGAGTTCTTTCTCC	9602	False	NA	1	True	TATAAA	-45	NA	26494223	26483068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_26483775_26484791_26484865_26486091_26486188_26486302_26486479_26487215_26487350_26494135
transcript_49456.known	chr2	+	536	1	FSM	ENSMUSG00000026921.21	ENSMUST00000172683.2	536	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTTGTCAATGGGGGAAT	5689	False	NA	13	True	AATAAA	-13	NA	26482158	26482694	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_26482200_26482700
transcript_49457.nnic	chr2	-	471	2	Genic_Genomic	ENSMUSG00000077192.5	novel	132	1	NA	NA	-923	2	multi-exon	FALSE	canonical	3	46	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGAAAGCTGGAGGTGGG	NA	False	NA	NA	False	NA	NA	NA	26530256	26529199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr2_-_26529484_26530069
transcript_49459.nnic	chr2	+	543	5	NNC	ENSMUSG00000086775.8	novel	3947	3	NA	NA	197	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.6583123951777	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACCTGTGTCTCTCGGGGT	NA	False	NA	NA	False	AATAAA	-20	NA	26533523	26535956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_26533589_26533708_26533780_26533860_26533969_26535513_26535616_26535759
transcript_4946.known	chr1	+	661	6	FSM	ENSMUSG00000026575.16	ENSMUST00000193591.6	661	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	56.5133612520084	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCTATGGGGTACTGCAT	7384	False	NA	NA	False	NA	NA	NA	164200837	164264805	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_164200934_164206927_164206993_164208209_164208279_164213268_164213371_164230538_164230647_164264584
transcript_49461.nnic	chr2	-	1765	7	NNC	ENSMUSG00000015787.16	novel	1811	6	NA	NA	-30	-207	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	1.7950549357115	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATAGGAAGTTTTTAGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	26746840	26732721	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_26733887_26735967_26736103_26736585_26736622_26738262_26738320_26738932_26739003_26746433_26746565_26746669
transcript_49463.known	chr2	-	748	5	FSM	ENSMUSG00000036160.14	ENSMUST00000142131.2	748	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	123.331615979034	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAGGCAGAAAGTGAAAGG	NA	False	NA	NA	False	NA	NA	NA	26792802	26782686	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_26782738_26782878_26783080_26789348_26789438_26789740_26789945_26792599
transcript_49464.known	chr2	-	2971	5	FSM	ENSMUSG00000036160.14	ENSMUST00000047632.14	2971	5	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	26.2154534578367	574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTTTTTATTTGTGT	NA	False	NA	NA	False	TTTAAA	-3	NA	26792891	26780446	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_26782738_26782878_26783080_26789348_26789438_26789740_26789945_26792705
transcript_49467.known	chr2	-	973	4	FSM	ENSMUSG00000015776.13	ENSMUST00000015920.12	973	4	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_1	17.7951304200522	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCCTGACTGCCAGTG	NA	False	NA	NA	False	NA	NA	NA	26800581	26795599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_26796006_26798104_26798314_26799004_26799086_26800304
transcript_49468.known	chr2	-	3506	3	FSM	ENSMUSG00000015776.13	ENSMUST00000102899.10	3506	3	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_1	2.5	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTCTGTCTTTCTTGAT	NA	False	NA	-4	True	AATAAA	-18	NA	26800689	26795273	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_26798314_26799004_26799086_26800304
transcript_4947.nnic	chr1	+	1675	6	NNC	ENSMUSG00000026575.16	novel	2536	16	NA	NA	3868	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	56.5133612520084	50	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTTTGGTTTTATTTCA	NA	False	NA	NA	False	AATAAA	-20	NA	164204705	164264869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_164205752_164206927_164206993_164208209_164208279_164213268_164213371_164230538_164230647_164264584
transcript_49472.known	chr2	+	74	1	FSM	ENSMUSG00000065258.3	ENSMUST00000083324.3	74	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGACGCCCTCCTGCCCTGG	NA	False	NA	NA	False	NA	NA	NA	26801272	26801346	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_26801300_26801300
transcript_49473.known	chr2	+	914	8	FSM	ENSMUSG00000062647.17	ENSMUST00000102898.5	914	8	0	0	0	0	multi-exon	FALSE	canonical	3	2861	junction_1	795.089880684786	7239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGGTTATTTGGGT	NA	False	NA	6	True	AATATA	-19	NA	26800775	26803330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_26800843_26801017_26801139_26801433_26801584_26802030_26802172_26802377_26802458_26802682_26802814_26802999_26803070_26803176
transcript_49474.known	chr2	+	920	7	FSM	ENSMUSG00000062647.17	ENSMUST00000143678.8	920	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	1889.33392143016	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGGTTATTTGGGT	NA	False	NA	6	True	AATATA	-19	NA	26801017	26803330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_26801139_26801433_26801584_26802030_26802172_26802304_26802458_26802682_26802814_26802999_26803070_26803176
transcript_49475.known	chr2	+	878	6	FSM	ENSMUSG00000062647.17	ENSMUST00000136269.8	878	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	2055.85160943099	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGTATATAGGCCACAGG	NA	False	NA	NA	False	NA	NA	NA	26800828	26803069	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_26801139_26801433_26801584_26802030_26802168_26802377_26802458_26802682_26802814_26802999
transcript_49476.known	chr2	+	593	2	FSM	ENSMUSG00000062647.17	ENSMUST00000147143.2	593	2	0	0	0	0	multi-exon	FALSE	canonical	3	4686	junction_1	0	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGGTTATTTGGGT	NA	False	NA	6	True	AATATA	-19	NA	26802630	26803330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_26803070_26803176
transcript_49477.known	chr2	+	1043	7	FSM	ENSMUSG00000062647.17	ENSMUST00000137376.8	1043	7	0	0	0	0	multi-exon	FALSE	canonical	3	2861	junction_1	784.717234989068	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGGTTATTTGGGT	NA	False	NA	6	True	AATATA	-19	NA	26800832	26803330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_26800843_26801017_26801139_26801433_26801584_26802030_26802172_26802377_26802458_26802682_26803070_26803176
transcript_49489.known	chr2	+	1203	6	FSM	ENSMUSG00000014873.16	ENSMUST00000015017.8	1203	6	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_5	33.4388995034227	1993	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATATGTGTATCATTGTT	NA	False	NA	37	True	CATAAA	-32	NA	26806378	26810195	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_26806516_26806716_26806872_26807439_26807544_26808884_26809068_26809203_26809371_26809738
transcript_49493.nic	chr2	+	1156	6	NIC	ENSMUSG00000014873.16	novel	1203	6	NA	NA	-20	0	combination_of_known_junctions	TRUE	canonical	3	21	junction_3	115.994827470883	608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTGCCAAACCAATATGT	NA	False	NA	26	True	CATAAA	-21	NA	26806358	26810184	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_26806516_26806716_26806872_26807439_26807544_26808940_26809068_26809203_26809371_26809738
transcript_4950.nic	chr1	+	852	5	NIC	ENSMUSG00000026575.16	novel	1740	14	NA	NA	-68	-1307	combination_of_known_junctions	FALSE	canonical	3	36	junction_2	39.1024295920343	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGGGATTGGTTCCTAAT	NA	False	NA	NA	False	ATTAAA	-17	NA	164135172	164160499	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_164135324_164135628_164135820_164140424_164140508_164155861_164155970_164160180
transcript_49500.known	chr2	-	3281	6	FSM	ENSMUSG00000014867.10	ENSMUST00000015011.10	3281	6	0	0	0	0	multi-exon	TRUE	canonical	3	778	junction_1	38.262252939418	1291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTGTGGTCCTATATGG	NA	False	NA	-2	True	AATAAA	-18	NA	26823940	26810051	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_26812184_26814356_26814544_26814964_26815009_26815619_26815697_26816780_26816968_26823286
transcript_49506.known	chr2	+	2519	5	FSM	ENSMUSG00000014873.16	ENSMUST00000126947.8	2519	5	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_4	33.741665637606	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTGCCAAACCAATATGT	NA	False	NA	26	True	CATAAA	-21	NA	26806392	26810184	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_26806516_26806716_26806872_26807439_26809068_26809203_26809371_26809738
transcript_4951.nnic	chr1	+	683	4	NIC	ENSMUSG00000026575.16	novel	687	6	NA	NA	-122	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	63.693711533313	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTTTGGTTTTATTTCA	7262	False	NA	NA	False	AATAAA	-20	NA	164200715	164264869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_164200904_164213268_164213371_164230538_164230647_164264584
transcript_49510.known	chr2	-	737	5	FSM	ENSMUSG00000014867.10	ENSMUST00000153641.8	737	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	353.786217227297	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGGCTCTTGGCCCAGG	NA	False	NA	NA	False	NA	NA	NA	26823395	26811973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_26812184_26814356_26814544_26814964_26815009_26816780_26816968_26823286
transcript_49513.known	chr2	-	1173	9	FSM	ENSMUSG00000015790.17	ENSMUST00000015934.13	1173	9	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_4	27.1834048639974	2602	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGCTCAGTCTGAAACC	NA	False	NA	-5	True	AATAAA	-19	NA	26806542	26803394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806019_26806268
transcript_49514.known	chr2	-	1151	9	FSM	ENSMUSG00000015790.17	ENSMUST00000167661.7	1151	9	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_7	110.059571937201	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGCTCAGTCTGAAACC	NA	False	NA	-5	True	AATAAA	-19	NA	26806480	26803394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805782_26805966_26806019_26806268
transcript_49515.known	chr2	-	975	9	FSM	ENSMUSG00000015790.17	ENSMUST00000183520.8	975	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	113.594055192162	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGCTCAGTCTGAAACC	NA	False	NA	-5	True	AATAAA	-19	NA	26806312	26803394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_26803518_26803588_26803703_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806019_26806268
transcript_49517.known	chr2	-	2278	8	FSM	ENSMUSG00000052406.15	ENSMUST00000114020.10	2278	8	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_5	23.9344342497821	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGGAGTGTGTGGAAGTT	NA	False	NA	-9	True	AATAAA	-11	NA	26854398	26843577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_26844609_26845506_26845582_26846300_26846376_26848490_26848580_26850235_26850430_26850614_26850753_26852394_26852736_26854063
transcript_4952.known	chr1	+	513	3	FSM	ENSMUSG00000026575.16	ENSMUST00000192225.2	513	3	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_2	21	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGGAACACAGAGGAGAGA	NA	False	NA	NA	False	NA	NA	NA	164135316	164140736	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_164135324_164135628_164135820_164140421
transcript_49520.nnic	chr2	-	2082	7	NIC	ENSMUSG00000052406.15	novel	2281	8	NA	NA	5	0	combination_of_known_splicesites	FALSE	canonical	3	43	junction_4	59.1629106789042	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGTGTGTGGAAGTTCAT	NA	False	NA	-6	True	AATAAA	-14	NA	26854393	26843574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_26844609_26845506_26845582_26846300_26846376_26848490_26848580_26850614_26850753_26852394_26852736_26854063
transcript_49522.known	chr2	-	1121	7	FSM	ENSMUSG00000052406.15	ENSMUST00000136710.2	1121	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	74.3611681816076	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCAGTACTGCAAACCGGC	NA	False	NA	NA	False	NA	NA	NA	26854291	26844552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_26844609_26845506_26845582_26848490_26848580_26850235_26850430_26850614_26850753_26852394_26852736_26854063
transcript_49527.nic	chr2	-	1748	5	ISM	ENSMUSG00000052406.15	ENSMUST00000136710.2	1121	7	-102	3282	5	213	5prime_fragment	FALSE	canonical	3	152	junction_2	27.518175811634	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGCTGTTTTGCCTACCC	NA	False	NA	NA	False	NA	NA	NA	26854393	26847834	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_26848580_26850235_26850430_26850614_26850753_26852394_26852736_26854063
transcript_49528.nnic	chr2	-	1476	4	NIC	ENSMUSG00000052406.15	novel	2281	8	NA	NA	-19	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	92.4854342886249	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGTGTGTGGAAGTTCAT	NA	False	NA	-6	True	AATAAA	-14	NA	26854355	26843574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_26844609_26845506_26845582_26846300_26846376_26854063
transcript_49529.nnic	chr2	-	1556	4	NIC	ENSMUSG00000052406.15	novel	1121	7	NA	NA	5	215	combination_of_known_splicesites	FALSE	canonical	3	43	junction_1	78.3893416791396	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTGTTTTGCCTACCCTA	NA	False	NA	NA	False	NA	NA	NA	26854393	26847832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_26848580_26850614_26850753_26852394_26852736_26854063
transcript_49530.known	chr2	+	2689	5	FSM	ENSMUSG00000015488.15	ENSMUST00000114007.8	2689	5	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_3	7.54983443527075	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACACAGTCTGCCTGTCAC	NA	False	NA	41	True	AGTAAA	-18	NA	26899937	26911101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_26900118_26904104_26904178_26905495_26905622_26908384_26908493_26908899
transcript_49532.known	chr2	+	1286	4	FSM	ENSMUSG00000015488.15	ENSMUST00000114005.9	1286	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	42.9262934186807	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTACCTGTTCATCTATT	NA	False	NA	NA	False	AGTAAA	-18	NA	26899937	26906861	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_26900118_26904104_26904178_26905495_26905622_26905954
transcript_49534.known	chr2	-	2138	10	FSM	ENSMUSG00000036067.13	ENSMUST00000045702.6	2138	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	0.916245694581702	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGAGTGGGCTCTCTTCC	NA	False	NA	NA	False	AATAAA	-29	NA	26918010	26911374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_26912082_26912730_26912877_26913099_26913262_26913546_26913656_26914194_26914348_26914596_26914806_26915234_26915335_26915912_26916120_26917152_26917316_26917828
transcript_49535.nnic	chr2	+	1638	2	NNC	ENSMUSG00000109946.2	novel	509	2	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCTTTCTCATTTTTCTT	NA	False	NA	3	True	AATAAA	-15	NA	27332486	27334233	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_27332831_27332939
transcript_49536.known	chr2	+	1898	1	FSM	ENSMUSG00000109946.2	ENSMUST00000209765.2	1898	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCTTTCTCATTTTTCTT	NA	False	NA	3	True	AATAAA	-15	NA	27332335	27334233	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_27332300_27334200
transcript_49538.known	chr2	-	5272	12	FSM	ENSMUSG00000026918.17	ENSMUST00000077737.13	5272	12	0	0	0	0	multi-exon	TRUE	canonical	3	192	junction_7	30.2258714644446	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTGTGTGGTGCTCT	NA	False	NA	-6	True	AATAAA	-14	NA	27365698	27335590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_27338593_27339212_27339339_27340268_27340562_27342844_27343087_27344324_27344517_27346920_27347050_27349468_27349841_27351540_27351756_27352432_27352581_27353466_27353605_27353900_27354206_27365588
transcript_49539.known	chr2	-	2893	8	FSM	ENSMUSG00000026918.17	ENSMUST00000130932.2	2893	8	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_3	33.5747718699986	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGGAAAAGAAGAAGAAA	NA	False	NA	-4	True	NA	NA	NA	27365665	27343007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_27344517_27346920_27347050_27349468_27349841_27351540_27351756_27352432_27352581_27353466_27353605_27353900_27354206_27365588
transcript_4954.known	chr1	+	1635	13	FSM	ENSMUSG00000026575.16	ENSMUST00000191947.6	1635	13	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	28.2090411038731	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAAGTGACTTTGGTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	164135641	164264863	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_164135820_164140424_164140508_164155861_164155970_164160180_164160348_164168297_164168409_164170782_164170834_164172787_164172996_164175342_164175449_164206927_164206993_164208209_164208279_164213268_164213371_164230538_164230647_164264584
transcript_49542.known	chr2	+	2890	14	FSM	ENSMUSG00000026917.16	ENSMUST00000113952.10	2890	14	0	0	0	0	multi-exon	FALSE	canonical	3	1324	junction_4	114.959164347413	1014	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTTCCATATAAGTTTG	NA	False	NA	33	True	AATAAA	-19	NA	27405168	27426547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_27405293_27408640_27408805_27409360_27409470_27409754_27409829_27410338_27410429_27410584_27410675_27410839_27410924_27415117_27415174_27418285_27418333_27421650_27421727_27423004_27423039_27423348_27423424_27423779_27423868_27424768
transcript_4955.known	chr1	-	3948	9	FSM	ENSMUSG00000026577.14	ENSMUST00000027866.11	3948	9	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_8	81.786975582913	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGACTTAGTTCTTTCTC	NA	False	NA	NA	False	AATAAA	-13	NA	164135053	164117368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_164119981_164123278_164123499_164125807_164125937_164127113_164127314_164129852_164130290_164131472_164131494_164134007_164134086_164134715_164134924_164135010
transcript_49555.known	chr2	+	549	2	FSM	ENSMUSG00000085929.2	ENSMUST00000132898.2	549	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGACAGAAAAGGGCGGG	NA	False	NA	NA	False	NA	NA	NA	27430440	27433197	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_27430533_27432740
transcript_49561.nnic	chr2	+	1432	7	NNC	ENSMUSG00000015846.16	novel	4905	10	NA	NA	4430	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	34.4548819311413	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTTTCCAAAGATGCCCT	9445	False	NA	-6	True	TATAAA	-2	NA	27634642	27650195	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_27634801_27638623_27638794_27642323_27642454_27644234_27644368_27646210_27646303_27647772_27647879_27649552
transcript_49563.known	chr2	+	1072	4	FSM	ENSMUSG00000026833.19	ENSMUST00000102879.4	1072	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	11.7756811551038	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTGTGGTGTTCTGAG	203	False	NA	3	True	AATAAA	-11	NA	28095670	28104437	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_28096112_28098089_28098240_28102543_28102700_28104112
transcript_49566.known	chr2	-	812	3	FSM	ENSMUSG00000026831.17	ENSMUST00000086370.11	812	3	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	7	679	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCCACGCCTCTTATT	NA	False	NA	0	True	ATTAAA	-19	NA	28356344	28352012	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_28352447_28355148_28355228_28356045
transcript_49572.known	chr2	+	2080	4	FSM	ENSMUSG00000035772.12	ENSMUST00000038600.4	2080	4	0	0	0	0	multi-exon	FALSE	canonical	3	508	junction_2	49.4592986426438	979	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTCTCTAGAACTTTGAAC	NA	False	NA	28	True	NA	NA	NA	28358077	28361190	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_28358155_28358254_28358372_28358832_28358963_28359434
transcript_49575.known	chr2	+	2429	4	FSM	ENSMUSG00000035772.12	ENSMUST00000123533.8	2429	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	269.775215071116	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCTGGTGTCAGACTCTC	NA	False	NA	15	True	NA	NA	NA	28358093	28361177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_28358155_28358254_28358372_28358832_28359341_28359434
transcript_49576.known	chr2	+	2504	3	FSM	ENSMUSG00000035772.12	ENSMUST00000146332.2	2504	3	0	0	0	0	multi-exon	FALSE	canonical	3	604	junction_2	8	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCTGGTGTCAGACTCTC	NA	False	NA	15	True	NA	NA	NA	28358101	28361177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_28358155_28358254_28358963_28359434
transcript_49578.known	chr2	+	885	1	FSM	ENSMUSG00000082895.2	ENSMUST00000120702.2	885	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	142	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGCTGTGCAGGTGCCT	NA	False	NA	NA	False	NA	NA	NA	28367177	28368062	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_28367200_28368100
transcript_4958.known	chr1	-	1602	8	FSM	ENSMUSG00000026577.14	ENSMUST00000086032.4	1602	8	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_7	61.8978750747997	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATACATACCCATGAAGCTA	NA	False	NA	-24	True	AATAAA	-19	NA	164135058	164119698	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_164119981_164123278_164123499_164125807_164125937_164127113_164127314_164129852_164130290_164134007_164134086_164134715_164134924_164135010
transcript_49580.known	chr2	+	1675	1	FSM	ENSMUSG00000063611.6	ENSMUST00000238539.2	1675	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTGCCTTGGTCATGT	NA	False	NA	8	True	NA	NA	NA	28396110	28397785	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_28396100_28397800
transcript_49581.known	chr2	-	2667	12	FSM	ENSMUSG00000026816.15	ENSMUST00000113889.9	2667	12	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_2	52.8098100077803	204	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTGGTGTTTGATGCCCT	NA	False	NA	-49	True	AATAAA	-22	NA	28473201	28456322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_28457190_28457619_28457815_28458496_28458640_28459303_28459387_28460430_28460529_28460624_28460706_28461124_28461240_28462207_28462313_28463388_28463585_28467887_28468087_28469529_28469750_28472836
transcript_49584.nic	chr2	+	1439	11	ISM	ENSMUSG00000026812.17	ENSMUST00000028155.12	7674	23	-4	18566	-4	94	5prime_fragment	FALSE	canonical	3	21	junction_1	14.2828568570857	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTAGTTTCTGGGCTTCT	3448	False	NA	NA	False	AATAAA	-18	NA	28531244	28562613	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_28531303_28542180_28542244_28548616_28548803_28551593_28551698_28552472_28552626_28553511_28553657_28555019_28555175_28555567_28555642_28560880_28561057_28561777_28561894_28562404
transcript_49586.nic	chr2	+	1627	10	ISM	ENSMUSG00000026812.17	ENSMUST00000153625.8	2388	11	-17	1475	-4	-229	5prime_fragment	FALSE	canonical	3	21	junction_1	13.8198283028765	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAAGAAAAGAAAA	3448	False	NA	NA	False	NA	NA	NA	28531244	28562290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_28531303_28542180_28542244_28548616_28548803_28551593_28551698_28552472_28552626_28553511_28553657_28555019_28555175_28555567_28555642_28560880_28561057_28561777
transcript_49594.known	chr2	-	699	5	FSM	ENSMUSG00000026809.16	ENSMUST00000124840.2	699	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	1.22474487139159	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGCCTGGCTTGGTTTC	NA	False	NA	NA	False	AATAAA	-14	NA	28589695	28582095	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_28582165_28582923_28583072_28583635_28583839_28585918_28586096_28589593
transcript_49595.nnic	chr2	-	568	4	NIC	ENSMUSG00000026809.16	novel	671	5	NA	NA	-13	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	2.62466929133727	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGGCTTGGTTTCCTGG	NA	False	NA	NA	False	AATAAA	-18	NA	28589708	28582091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_28582165_28583635_28583839_28585918_28586096_28589593
transcript_49596.known	chr2	-	574	4	FSM	ENSMUSG00000026809.16	ENSMUST00000144209.8	574	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	1.24721912892465	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTATGGAGGCGTGGTCA	NA	False	NA	NA	False	NA	NA	NA	28589739	28583023	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_28583072_28583635_28583839_28585918_28586096_28589593
transcript_49598.known	chr2	+	1567	13	FSM	ENSMUSG00000026807.9	ENSMUST00000074156.7	1567	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2.54405625374562	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATAGCCTTCTTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	28590175	28703177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_28590287_28592700_28592786_28599938_28599989_28602286_28602401_28606428_28606498_28623818_28623901_28624385_28624458_28625514_28625716_28629544_28629677_28632671_28632762_28649953_28650096_28699671_28699753_28702839
transcript_49599.nnic	chr2	+	674	4	NNC	ENSMUSG00000026807.9	novel	1567	13	NA	NA	17439	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	3.29983164553722	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATAGCCTTCTTTTTTTAA	8348	False	NA	NA	False	AATAAA	-19	NA	28649700	28703177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_28649814_28649953_28650096_28699671_28699753_28702839
transcript_49600.known	chr2	-	6941	5	FSM	ENSMUSG00000035666.15	ENSMUST00000037117.6	6941	5	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_4	18.8215302247187	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAAGGGGATTTTTTTTT	NA	False	NA	-5	True	AATAAA	-19	NA	28730298	28712316	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_28716810_28717489_28717579_28720513_28720645_28723561_28725386_28729894
transcript_49602.known	chr2	+	3271	20	FSM	ENSMUSG00000026806.16	ENSMUST00000113853.3	3271	20	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_10	16.137738156191	190	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAGGACTCAGCAGAGAAA	NA	False	NA	18	True	AATAAA	-19	NA	28730470	28795583	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_28730873_28734849_28735107_28735209_28735286_28736005_28736050_28737452_28737524_28738297_28738363_28744782_28744828_28746206_28746249_28747131_28747197_28748747_28748868_28748999_28749107_28749880_28750090_28750727_28750905_28753727_28753788_28764142_28764194_28765701_28765842_28771154_28771237_28776902_28777015_28782390_28782554_28794600
transcript_49607.known	chr2	-	1759	6	FSM	ENSMUSG00000079502.9	ENSMUST00000189711.7	1759	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2.03960780543711	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTTCTCCTTGTGTCTTT	NA	False	NA	-6	True	AATATA	-15	NA	28945051	28816964	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_28817964_28846006_28846109_28852643_28852750_28874307_28874534_28875813_28875914_28944825
transcript_49608.known	chr2	-	1042	6	FSM	ENSMUSG00000079502.9	ENSMUST00000157048.4	1042	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	3.07245829914744	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGCTGTCTGTATAAAGG	NA	False	NA	NA	False	NA	NA	NA	28945078	28845381	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_28845637_28846006_28846109_28852643_28852750_28874307_28874534_28875813_28875914_28944825
transcript_4961.known	chr1	-	2430	7	FSM	ENSMUSG00000026577.14	ENSMUST00000120447.8	2430	7	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	15.0738920727933	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATAAGGTGCTCATTTGT	NA	False	NA	-5	True	ATTAAA	-16	NA	164135058	164118957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_164119981_164123278_164123499_164125807_164125937_164127113_164127314_164129852_164130290_164134007_164134086_164134715
transcript_49611.nnic	chr2	-	329	2	NNC	ENSMUSG00000079502.9	novel	1841	7	NA	NA	-13	14803	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGGTTTCCTGTGGGTAC	NA	False	NA	NA	False	NA	NA	NA	28945091	28927105	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_28927169_28944825
transcript_49612.known	chr2	-	610	2	FSM	ENSMUSG00000079502.9	ENSMUST00000113843.2	610	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCAGCTTCTCATTTCCC	NA	False	NA	NA	False	ATTAAA	-10	NA	28945071	28941908	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_28942273_28944825
transcript_49618.nic	chr2	+	596	2	ISM	ENSMUSG00000026803.18	ENSMUST00000142786.8	5336	11	-3	22443	1	-16423	5prime_fragment	FALSE	canonical	3	53	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATAGTGTTCTGGAGGTGG	NA	False	NA	NA	False	AAGAAA	-27	NA	28950274	28955185	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_28950316_28954630
transcript_49619.nic	chr2	+	1198	2	ISM	ENSMUSG00000026803.18	ENSMUST00000142786.8	5336	11	-59	21897	-55	-15877	5prime_fragment	FALSE	canonical	3	53	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCACAAGTCTGTTGCTC	NA	False	NA	NA	False	AAAAAG	-12	NA	28950218	28955731	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_28950316_28954630
transcript_4962.known	chr1	-	2580	6	FSM	ENSMUSG00000026576.13	ENSMUST00000027863.13	2580	6	0	0	0	0	multi-exon	FALSE	canonical	3	1015	junction_5	105.155123508082	4181	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACGTGTGTGACTCGATT	NA	False	NA	-16	True	AATAAA	-16	NA	164285924	164264677	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_164266109_164266867_164266952_164269025_164269211_164270763_164270920_164281057_164281187_164285329
transcript_49620.known	chr2	+	4160	12	FSM	ENSMUSG00000026803.18	ENSMUST00000100237.4	4160	12	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	12.4628373193903	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTGTGAAATGACTTGAA	NA	False	NA	21	True	AATAAA	-23	NA	28950273	28977668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_28950316_28954630_28955921_28957014_28957242_28959903_28960090_28961309_28961389_28963900_28964032_28964585_28964821_28969400_28969491_28971023_28971090_28973544_28973631_28974648_28974827_28976118
transcript_49621.known	chr2	+	396	2	FSM	ENSMUSG00000086519.2	ENSMUST00000141935.2	396	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATGTTTGGCTGGCCTCTT	NA	False	NA	NA	False	NA	NA	NA	28978677	28984513	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_28978768_28984207
transcript_49623.known	chr2	+	10970	26	FSM	ENSMUSG00000043535.14	ENSMUST00000061578.9	10970	26	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_8	57.9545477076648	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGGGTTAGAAGTACTCC	NA	False	NA	NA	False	AATAAA	-18	NA	29015003	29072483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_29015562_29015863_29015976_29016885_29017076_29020191_29020403_29023933_29024044_29029231_29029452_29030280_29030401_29033901_29034074_29034189_29034278_29034614_29038734_29040019_29040120_29043949_29044109_29046999_29047233_29048109_29048278_29048852_29049010_29051483_29051586_29051761_29051878_29052989_29053062_29054413_29054564_29056279_29056388_29061174_29061363_29062327_29062421_29063568_29063734_29066888_29066988_29067526_29067615_29069411
transcript_49625.known	chr2	+	525	5	FSM	ENSMUSG00000043535.14	ENSMUST00000129544.8	525	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	97.9093968932502	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGATGACGATGATTTATA	NA	False	NA	NA	False	NA	NA	NA	29014192	29020257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_29014282_29014780_29014849_29015863_29015976_29016885_29017076_29020191
transcript_49626.nic	chr2	+	1824	4	ISM	ENSMUSG00000043535.14	ENSMUST00000061578.9	10970	26	18	51310	18	712	5prime_fragment	FALSE	canonical	3	157	junction_1	22.939534045447	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTAATACTTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	29015021	29021173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_29015562_29015863_29015976_29016885_29017076_29020191
transcript_49631.known	chr2	+	1254	8	FSM	ENSMUSG00000026799.16	ENSMUST00000028139.11	1254	8	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_3	14.0393034305954	939	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGTGTTCTGCTTCTT	NA	False	NA	32	True	AATAAA	-20	NA	29236830	29414805	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_29237060_29239857_29240003_29303399_29303531_29361304_29361399_29390230_29390339_29399434_29399477_29412785_29412864_29414378
transcript_49640.nnic	chr2	+	1109	6	NNC	ENSMUSG00000026799.16	novel	1254	8	NA	NA	-35370	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	71.1910106684826	90	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGTGTTCTGCTTCTT	4330	False	NA	32	True	AATAAA	-20	NA	29351152	29414805	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_29351513_29361304_29361399_29390230_29390339_29399434_29399477_29412785_29412864_29414378
transcript_49641.nnic	chr2	+	948	6	NNC	ENSMUSG00000026799.16	novel	1254	8	NA	NA	-34487	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	71.9844427636972	219	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGTGTTCTGCTTCTT	5213	False	NA	32	True	AATAAA	-20	NA	29352035	29414805	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_29352235_29361304_29361399_29390230_29390339_29399434_29399477_29412785_29412864_29414378
transcript_49642.known	chr2	+	1686	5	FSM	ENSMUSG00000026799.16	ENSMUST00000113830.11	1686	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_4	68.8853213681986	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGCTAGCATCTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	29236844	29368445	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_29237060_29239857_29240003_29303399_29303531_29361304_29361399_29367344
transcript_49665.nnic	chr2	-	2408	9	NNC	ENSMUSG00000039826.14	novel	3408	8	NA	NA	-21	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	57.2362155894325	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCATGTGATGTTTTAATTA	NA	False	NA	-2	True	TATAAA	-27	NA	29677704	29666117	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_29666505_29666698_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
transcript_4967.nnic	chr1	+	582	3	NNC	ENSMUSG00000097281.3	novel	2023	3	NA	NA	-38	54426	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	1	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGGAAATAGTGGTTATTT	NA	False	NA	NA	False	TATAAA	-27	NA	164330839	164396877	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_164330945_164335773_164335905_164396531
transcript_49678.known	chr2	-	3408	8	FSM	ENSMUSG00000039826.14	ENSMUST00000048044.12	3408	8	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_2	23.9267589931935	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGGCATGTGATGTTTTA	NA	False	NA	-6	True	TATAAA	-23	NA	29678514	29666121	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
transcript_49681.known	chr2	-	1035	7	FSM	ENSMUSG00000039826.14	ENSMUST00000113807.10	1035	7	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	64.3810272259356	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTGGTCTCTTCTTCTTC	NA	False	NA	NA	False	NA	NA	NA	29677660	29651235	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_29651701_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
transcript_49683.known	chr2	-	3930	7	FSM	ENSMUSG00000039826.14	ENSMUST00000156846.8	3930	7	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_4	39.677869566464	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGACTGGTGTTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	29677672	29664695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29674964_29675040_29676487_29676620_29677514
transcript_49686.known	chr2	-	744	7	FSM	ENSMUSG00000039826.14	ENSMUST00000177467.8	744	7	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_1	60.8041025662651	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAGCGGAACTGCAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	29677634	29667768	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_29667969_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
transcript_49689.nic	chr2	-	1856	7	ISM	ENSMUSG00000039826.14	ENSMUST00000048044.12	3408	8	13	2314	13	170	5prime_fragment	FALSE	canonical	3	126	junction_1	24.0791518861349	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAGAAAAAAAGGAAAAA	NA	False	NA	NA	False	NA	NA	NA	29678501	29668435	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
transcript_49691.known	chr2	-	806	6	FSM	ENSMUSG00000039826.14	ENSMUST00000177133.8	806	6	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	43.1879612855249	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAGAAACAGAGGCTGGG	NA	False	NA	NA	False	NA	NA	NA	29677683	29668605	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_29668881_29669834_29669908_29672131_29672214_29674964_29675040_29676487_29676620_29677514
transcript_49694.nic	chr2	-	694	2	ISM	ENSMUSG00000039826.14	ENSMUST00000175644.2	371	3	-38	1163	0	-1163	5prime_fragment	FALSE	canonical	3	189	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTGGAGTACAAAACAGCTA	NA	False	NA	NA	False	NA	NA	NA	29677683	29676094	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_29676620_29677514
transcript_49695.known	chr2	+	1044	2	FSM	ENSMUSG00000026798.11	ENSMUST00000138233.2	1044	2	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	0	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGCTGGTTGTCCTAG	NA	False	NA	27	True	AATAAA	-17	NA	29685576	29686998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_29686042_29686419
transcript_49697.known	chr2	+	377	5	FSM	ENSMUSG00000069020.10	ENSMUST00000149379.8	377	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	146.989795564182	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCTCCACACTGCACGGC	7963	False	NA	NA	False	NA	NA	NA	29710086	29733157	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_29710219_29722703_29722775_29731413_29731496_29732732_29732782_29733114
transcript_49702.known	chr2	+	497	4	FSM	ENSMUSG00000069020.10	ENSMUST00000156944.8	497	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	149.455307329278	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCAGCCGCCTGAGTCCA	NA	False	NA	NA	False	NA	NA	NA	29717353	29733386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_29717448_29731413_29731496_29732732_29732782_29733114
transcript_49705.known	chr2	+	2196	5	FSM	ENSMUSG00000069020.10	ENSMUST00000091142.4	2196	5	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_1	41.2158949921023	1040	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTTGTTGTTGTTGTT	NA	False	NA	14	True	AATAAA	-24	NA	29717353	29735014	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_29717448_29722703_29722775_29731413_29731496_29732732_29732782_29733114
transcript_49706.known	chr2	+	986	2	FSM	ENSMUSG00000069020.10	ENSMUST00000130542.2	986	2	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29717406	29723648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_29717448_29722703
transcript_49708.nic	chr2	+	1448	9	ISM	ENSMUSG00000039787.14	ENSMUST00000047521.7	2715	12	-8	4502	-8	0	5prime_fragment	FALSE	canonical	3	16	junction_3	3.70809924354783	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGAAACTGTGTCCGTCT	NA	False	NA	NA	False	NA	NA	NA	29759497	29768350	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_29759738_29761034_29761146_29761286_29761405_29762574_29762710_29762819_29763025_29765616_29765737_29765999_29766077_29766172_29766280_29768015
transcript_49709.known	chr2	-	1406	2	FSM	ENSMUSG00000039798.3	ENSMUST00000047607.3	1406	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGACCTAAGCAACATCAT	NA	False	NA	NA	False	AATAAA	-30	NA	29760329	29758734	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_29759383_29759571
transcript_4971.known	chr1	-	5535	8	FSM	ENSMUSG00000040848.12	ENSMUST00000043338.10	5535	8	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_5	7.62380803664362	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGTGTTGTCTCTTACTC	NA	False	NA	NA	False	AATAAA	-26	NA	165022007	165001905	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_165006865_165009620_165009651_165011395_165011452_165011538_165011575_165012576_165012659_165015537_165015624_165015816_165015904_165021808
transcript_49710.known	chr2	+	2715	12	FSM	ENSMUSG00000039787.14	ENSMUST00000047521.7	2715	12	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_10	4.78288961380578	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAACAGCTGAGCCTCTTT	NA	False	NA	19	True	AATAAA	-30	NA	29759505	29772852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_29759738_29761034_29761146_29761286_29761405_29762574_29762710_29762819_29763025_29765616_29765737_29765999_29766077_29766172_29766280_29768015_29768149_29770624_29770753_29770926_29771131_29771707
transcript_49714.known	chr2	+	3807	21	FSM	ENSMUSG00000026790.20	ENSMUST00000113759.9	3807	21	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_8	298.874656001475	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCAGACTCCTTTGATTT	7225	False	NA	13	True	AATAAA	-13	NA	29779828	29821757	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802577_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
transcript_49715.known	chr2	+	3082	21	FSM	ENSMUSG00000026790.20	ENSMUST00000113757.8	3082	21	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_2	283.670455810964	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTTTTTATTTTATTT	7203	False	NA	NA	False	NA	NA	NA	29779806	29821107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_29779934_29782197_29782289_29783049_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
transcript_49723.nic	chr2	+	2374	17	NIC	ENSMUSG00000026790.20	novel	2305	17	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	3	561	junction_4	172.1394783308	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7100	False	NA	13	True	AATAAA	-17	NA	29779703	29812551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
transcript_49724.known	chr2	+	2305	17	FSM	ENSMUSG00000026790.20	ENSMUST00000113755.8	2305	17	0	0	0	0	multi-exon	FALSE	canonical	3	577	junction_4	168.994082736645	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7226	False	NA	13	True	AATAAA	-17	NA	29779829	29812551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
transcript_49728.known	chr2	+	2249	16	FSM	ENSMUSG00000026790.20	ENSMUST00000113767.8	2249	16	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_2	277.041625432393	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7128	False	NA	13	True	AATAAA	-17	NA	29779731	29812551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_29779934_29782197_29782289_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
transcript_4973.known	chr1	-	3798	7	FSM	ENSMUSG00000040848.12	ENSMUST00000192185.6	3798	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	27.3780122645081	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCATGGCTGTGGATTTCC	NA	False	NA	NA	False	AATGAA	-18	NA	165021890	165003439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_165006865_165009620_165009651_165011395_165011452_165011538_165011575_165012576_165012659_165015816_165015904_165021808
transcript_49739.known	chr2	+	437	2	FSM	ENSMUSG00000026790.20	ENSMUST00000148883.2	437	2	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTCACACTTGGCATCCC	6642	False	NA	NA	False	NA	NA	NA	29779245	29782589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_29779291_29782197
transcript_49740.nic	chr2	+	450	2	ISM	ENSMUSG00000026790.20	ENSMUST00000153216.8	828	5	-61	9016	-21	-100	5prime_fragment	FALSE	canonical	3	1240	junction_1	0	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAATAAAAGCATGAGAGAG	7172	False	NA	NA	False	NA	NA	NA	29779775	29782489	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_29779934_29782197
transcript_49741.known	chr2	+	658	6	FSM	ENSMUSG00000026790.20	ENSMUST00000133233.8	658	6	0	0	0	0	multi-exon	FALSE	canonical	3	561	junction_4	223.568334072605	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAGGTGGCACACGAGCT	7223	False	NA	NA	False	NA	NA	NA	29779826	29792258	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783525_29791088_29791260_29792192
transcript_49742.known	chr2	+	860	3	FSM	ENSMUSG00000019715.15	ENSMUST00000154490.8	860	3	0	0	0	0	multi-exon	FALSE	canonical	3	530	junction_2	57.5	259	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGATAGGAAGACAAAAAA	NA	False	NA	NA	False	AATAAA	-41	NA	29825439	29828967	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_29825611_29826021_29826250_29828506
transcript_49745.known	chr2	-	1814	9	FSM	ENSMUSG00000039715.9	ENSMUST00000113711.3	1814	9	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_3	11.9973955507018	413	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGAGAGCCCCAAGGAGCA	NA	False	NA	0	True	NA	NA	NA	29938893	29921557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_29921985_29922084_29922243_29922413_29922647_29922761_29922930_29923285_29923396_29923817_29923976_29924774_29924885_29928186_29928439_29938695
transcript_49748.known	chr2	+	1112	8	FSM	ENSMUSG00000054766.14	ENSMUST00000125824.8	1112	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5816.56168511387	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATACAACAGGAAAAGAA	NA	False	NA	-12	True	NA	NA	NA	29952612	29961130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_29952788_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
transcript_49751.known	chr2	+	2834	8	FSM	ENSMUSG00000054766.14	ENSMUST00000067996.7	2834	8	0	0	0	0	multi-exon	FALSE	canonical	3	3891	junction_1	4471.27957761808	4596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGGTCATTCTCCTTGTT	NA	False	NA	19	True	AATAAA	-24	NA	29956467	29962589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_29956906_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
transcript_49766.known	chr2	+	2824	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	0	0	0	0	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	15748	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGGTCATTCTCCTTGTT	NA	False	NA	19	True	AATAAA	-24	NA	29951864	29962589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
transcript_49767.known	chr2	+	844	3	FSM	ENSMUSG00000054766.14	ENSMUST00000147590.2	844	3	0	0	0	0	multi-exon	FALSE	canonical	3	15823	junction_2	947	5138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGGGTATAGACGGTGAG	NA	False	NA	NA	False	NA	NA	NA	29960181	29961441	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_29960368_29960452_29960600_29960930
transcript_49772.known	chr2	-	1187	5	FSM	ENSMUSG00000015335.17	ENSMUST00000081838.7	1187	5	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_4	253.22754095872	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCCATGCTGCCGTGGAC	NA	False	NA	-10	True	ATTAAA	-9	NA	29983647	29980962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_29981579_29981678_29981846_29981999_29982078_29982416_29982554_29983458
transcript_49777.known	chr2	-	1165	5	FSM	ENSMUSG00000015335.17	ENSMUST00000102865.11	1165	5	0	0	0	0	multi-exon	FALSE	canonical	3	614	junction_1	34.0917878674616	2152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCCGTGGACTCTTTCC	NA	False	NA	-3	True	ATTAAA	-16	NA	29983660	29980955	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_29981579_29981678_29981846_29981999_29982078_29982416_29982554_29983500
transcript_49778.known	chr2	+	3595	12	FSM	ENSMUSG00000039678.13	ENSMUST00000044556.12	3595	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	5.33195574495097	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCGGTGCTGTGCTGGCT	2697	False	NA	20	True	AATAAA	-19	NA	30023757	30042025	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_30023925_30024808_30024883_30026684_30026726_30027132_30027195_30027293_30027394_30030486_30030570_30032273_30032434_30036663_30036875_30037373_30037538_30038634_30038796_30038942_30039001_30039711
transcript_49787.known	chr2	+	503	6	FSM	ENSMUSG00000039678.13	ENSMUST00000136183.8	503	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	6.65131565932636	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCCTGAGAGAGATGATTA	2697	False	NA	NA	False	GGGGCT	-10	NA	30023757	30027308	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_30023925_30024808_30024883_30025420_30025565_30026684_30026726_30027132_30027195_30027293
transcript_49789.known	chr2	+	501	5	FSM	ENSMUSG00000039678.13	ENSMUST00000134013.2	501	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	2.69258240356725	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCGGCTTGCCCCCACTTG	2772	False	NA	NA	False	NA	NA	NA	30023832	30027525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_30023925_30024808_30024883_30026684_30026726_30027132_30027195_30027293
transcript_49795.nnic	chr2	+	608	3	NNC	ENSMUSG00000015337.6	novel	1063	3	NA	NA	-43	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	184.5	130	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCTCCTGTCCTGCTGCTT	NA	False	NA	34	True	NA	NA	NA	30061461	30064081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_30061581_30062853_30062964_30063702
transcript_49796.known	chr2	+	1063	3	FSM	ENSMUSG00000015337.6	ENSMUST00000015481.6	1063	3	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_1	35	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCTCCTGTCCTGCTGCTT	NA	False	NA	34	True	NA	NA	NA	30061504	30064081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_30062079_30062853_30062964_30063702
transcript_49797.known	chr2	-	1805	12	FSM	ENSMUSG00000039660.17	ENSMUST00000100220.5	1805	12	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_5	38.9436974393538	1129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCTCTCTAGACCCTGAT	NA	False	NA	-28	True	AATAAA	-15	NA	30068462	30063482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067495_30067604_30067734_30067931_30067978_30068401
transcript_49798.known	chr2	-	2010	11	FSM	ENSMUSG00000039660.17	ENSMUST00000144093.8	2010	11	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_5	40.8044115262063	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGCTCTCTAGACCCTG	NA	False	NA	-30	True	AATAAA	-13	NA	30068471	30063484	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067495_30067604_30067978_30068401
transcript_49799.known	chr2	-	2424	10	FSM	ENSMUSG00000039660.17	ENSMUST00000142669.8	2424	10	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_5	42.1051007144365	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCACCTATGCTCACGT	NA	False	NA	-10	True	AATAAA	-33	NA	30068441	30063464	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067495_30067604
transcript_49800.known	chr2	-	2123	10	FSM	ENSMUSG00000039660.17	ENSMUST00000127309.8	2123	10	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_5	42.729409885181	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCACCTATGCTCACGT	NA	False	NA	-10	True	AATAAA	-33	NA	30068454	30063464	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067978_30068401
transcript_49803.known	chr2	-	2026	14	FSM	ENSMUSG00000039648.15	ENSMUST00000113663.9	2026	14	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_13	49.789616559678	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCAAGGCAGCTTCTCTC	NA	False	NA	-10	True	AATAAA	-18	NA	30095813	30075142	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_30075582_30075678_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30084065_30084125_30087968_30088172_30095644
transcript_49807.known	chr2	-	2038	13	FSM	ENSMUSG00000039648.15	ENSMUST00000148555.8	2038	13	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_10	50.7807788439681	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCAGCTTCTCTCTTCCT	NA	False	NA	-5	True	AATAAA	-23	NA	30095828	30075137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30082199_30082298_30084065_30084125_30095644
transcript_49808.known	chr2	-	1876	13	FSM	ENSMUSG00000039648.15	ENSMUST00000044038.10	1876	13	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_12	20.7811011899434	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCAGCTTCTCTCTTCCTTT	NA	False	NA	-3	True	AATAAA	-25	NA	30095859	30075135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_30075582_30075678_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30084065_30084125_30095644
transcript_49809.known	chr2	+	5710	44	FSM	ENSMUSG00000052533.15	ENSMUST00000064447.12	5710	44	0	0	0	0	multi-exon	TRUE	canonical	3	896	junction_14	107.189702087653	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTCATGTGGCAACTTTC	4848	False	NA	18	True	ATTAAA	-19	NA	30176408	30234278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_30176483_30186659_30186715_30188427_30188502_30190811_30190897_30191020_30191102_30192012_30192058_30194068_30194162_30194293_30194414_30197532_30197745_30199230_30199346_30199889_30200091_30202611_30202702_30205127_30205194_30206499_30206620_30207192_30207320_30211893_30212047_30212183_30212311_30212497_30212586_30212682_30212760_30213531_30213647_30215239_30215361_30215484_30215552_30216461_30216591_30217459_30217600_30219318_30219426_30220568_30220776_30220858_30221029_30222396_30222467_30222831_30222900_30223281_30223478_30226335_30226414_30226653_30226740_30226943_30227090_30227235_30227418_30229510_30229712_30229827_30229921_30230600_30230760_30231703_30231842_30232384_30232460_30232544_30232803_30232933_30233066_30233286_30233361_30233472_30233603_30233713
transcript_49813.known	chr2	+	1325	12	FSM	ENSMUSG00000079484.13	ENSMUST00000113645.8	1325	12	0	0	0	0	multi-exon	FALSE	canonical	2	23	junction_1	18.5338644710542	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATATGTACGGGTACTT	9917	False	NA	NA	False	AATAAA	-17	NA	30156732	30172160	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_30156803_30156874_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30167634_30167657_30169966_30170096_30170182_30170300_30171021_30171149_30171781
transcript_4982.known	chr1	-	4110	19	FSM	ENSMUSG00000026571.13	ENSMUST00000027856.13	4110	19	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	5.55583332638924	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGGTTATTGGTTATATA	NA	False	NA	NA	False	AATAAA	-14	NA	165288034	165156266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_165157573_165160857_165160964_165164313_165164403_165165756_165165914_165167453_165167593_165178452_165178850_165179040_165179110_165179529_165179646_165184997_165185116_165216226_165216485_165217982_165218103_165219707_165219802_165227222_165227438_165239032_165239169_165247679_165247794_165250424_165250611_165251870_165251964_165256822_165256885_165287699
transcript_49826.known	chr2	+	534	7	FSM	ENSMUSG00000052533.15	ENSMUST00000113634.3	534	7	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_6	456.698539033743	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACTTGTTTCTTGTGTAT	4878	False	NA	NA	False	NA	NA	NA	30176438	30193821	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_30176483_30186659_30186715_30188427_30188502_30190811_30190897_30191020_30191102_30192012_30192058_30193671
transcript_49829.known	chr2	+	4301	4	FSM	ENSMUSG00000007476.19	ENSMUST00000095078.3	4301	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_3	22.6028513442196	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTGGAGGTCTCCATGC	NA	False	NA	7	True	AATAAA	-15	NA	30127733	30153802	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_30127818_30130580_30130690_30145179_30147345_30151859
transcript_49830.known	chr2	-	2104	1	FSM	ENSMUSG00000075419.5	ENSMUST00000100219.5	2104	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	180	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	2248	False	NA	24	True	AATAAA	-44	NA	30176346	30174242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_30174200_30176300
transcript_49831.known	chr2	+	751	9	FSM	ENSMUSG00000079484.13	ENSMUST00000139719.8	751	9	0	0	0	0	multi-exon	FALSE	canonical	2	39	junction_2	16.7998325884516	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGCTAGCAACCTCTTT	NA	False	NA	NA	False	NA	NA	NA	30156830	30170257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30167634_30167657_30169966_30170096_30170182
transcript_49832.known	chr2	+	1195	10	FSM	ENSMUSG00000079484.13	ENSMUST00000113643.8	1195	10	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	23.0029520381436	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAAAATATATTTTATATG	NA	False	NA	NA	False	AATAAA	-6	NA	30156860	30172149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167634_30167657_30169966_30170096_30170182_30170300_30171021_30171149_30171781
transcript_49833.known	chr2	+	1183	10	FSM	ENSMUSG00000079484.13	ENSMUST00000127689.8	1183	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	25.1837690233655	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATGGATGTTACTGTGTA	NA	False	NA	NA	False	NA	NA	NA	30156874	30172110	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30169966_30170096_30170182_30170300_30171021_30171149_30171781
transcript_49834.known	chr2	+	460	5	FSM	ENSMUSG00000079484.13	ENSMUST00000085290.4	460	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	37.2491610643783	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTTTATGTATATGTGT	NA	False	NA	NA	False	NA	NA	NA	30156862	30169538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_30156954_30159700_30159860_30167014_30167071_30167634_30167657_30169406
transcript_49835.known	chr2	-	1851	13	FSM	ENSMUSG00000026860.17	ENSMUST00000113621.10	1851	13	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_7	147.537824716993	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAGGATCTCAGTCCATG	NA	False	NA	-12	True	AATAAA	-14	NA	30249344	30234822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_30235440_30235710_30235952_30236070_30236086_30236364_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30239237_30239250_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
transcript_49838.known	chr2	-	1749	12	FSM	ENSMUSG00000026860.17	ENSMUST00000100215.11	1749	12	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	118.792269553979	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGATCTCAGTCCATGAG	NA	False	NA	-10	True	AATAAA	-16	NA	30249252	30234820	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_30235440_30235710_30235952_30236070_30236086_30236364_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
transcript_49844.known	chr2	-	1733	11	FSM	ENSMUSG00000026860.17	ENSMUST00000163668.3	1733	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_6	145.180714972754	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAGGATCTCAGTCCATG	NA	False	NA	-12	True	AATAAA	-14	NA	30249301	30234822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_30235440_30235710_30235952_30236070_30236086_30236364_30236466_30236622_30236713_30237092_30237117_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
transcript_49847.known	chr2	-	1810	11	FSM	ENSMUSG00000026860.17	ENSMUST00000028214.15	1810	11	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_5	55.8	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGATCTCAGTCCATGAG	NA	False	NA	-10	True	AATAAA	-16	NA	30249328	30234820	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_30235440_30235710_30235952_30236364_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
transcript_49855.known	chr2	-	1694	10	FSM	ENSMUSG00000026860.17	ENSMUST00000113620.10	1694	10	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_5	106.475639131188	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAGGATCTCAGTCCATG	NA	False	NA	-12	True	AATAAA	-14	NA	30249277	30234822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_30235440_30235710_30235952_30236364_30236466_30236622_30236713_30237092_30237117_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
transcript_49860.known	chr2	-	1823	9	FSM	ENSMUSG00000026860.17	ENSMUST00000151354.8	1823	9	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	111.252808953302	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGCTCCCTTAAGGCAGA	NA	False	NA	50	True	NA	NA	NA	30249317	30235146	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_30235440_30235710_30236466_30236622_30236713_30237092_30237117_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
transcript_49867.known	chr2	-	723	6	FSM	ENSMUSG00000026860.17	ENSMUST00000151145.8	723	6	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	125.735595596474	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCCCCACTCCCTGTCA	NA	False	NA	NA	False	NA	NA	NA	30249257	30239494	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_30239617_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
transcript_49869.known	chr2	+	3381	16	FSM	ENSMUSG00000026858.19	ENSMUST00000077977.14	3381	16	0	0	0	0	multi-exon	TRUE	canonical	3	32	junction_1	8.28385310240484	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTGTGTCTTGCTGGGT	NA	False	NA	6	True	GATAAA	-16	NA	30254244	30275533	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_30254318_30257563_30257800_30258888_30259100_30260306_30260420_30261126_30261245_30261544_30261682_30265684_30265803_30266657_30266759_30267490_30267607_30267982_30268056_30268185_30268273_30271649_30271749_30271950_30272086_30272977_30273032_30273601_30273719_30273940
transcript_49871.known	chr2	-	3833	14	FSM	ENSMUSG00000026853.16	ENSMUST00000028207.13	3833	14	0	0	0	0	multi-exon	TRUE	canonical	3	47	junction_2	7.8897731722819	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGTCTAGAATACATTCT	NA	False	NA	NA	False	ACTAAA	-16	NA	30305825	30291112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_30292806_30293500_30293639_30294539_30294603_30294949_30295086_30295177_30295301_30295396_30295517_30296379_30296481_30296967_30297147_30297717_30297893_30298067_30298234_30298752_30298807_30299968_30300088_30302994_30303259_30305323
transcript_49872.known	chr2	+	2294	9	FSM	ENSMUSG00000026856.15	ENSMUST00000123202.8	2294	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	142.89506639489	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGCTGAGCATACATTACT	NA	False	NA	7	True	AATAAA	-14	NA	30282427	30290539	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_30282525_30283658_30283866_30285670_30285772_30285988_30286074_30286164_30286265_30286443_30286543_30287030_30287160_30287479_30287570_30289153
transcript_49874.known	chr2	+	2251	8	FSM	ENSMUSG00000026856.15	ENSMUST00000028209.15	2251	8	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_6	27.7995742149158	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTGAGCATACATTACTTG	NA	False	NA	9	True	AATAAA	-16	NA	30282265	30290541	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_30282525_30285670_30285772_30285988_30286074_30286164_30286265_30286443_30286543_30287030_30287160_30287479_30287570_30289153
transcript_49878.known	chr2	+	1958	7	FSM	ENSMUSG00000026856.15	ENSMUST00000113612.10	1958	7	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_5	126.441027096957	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGCTGAGCATACATTACT	NA	False	NA	7	True	AATAAA	-14	NA	30282427	30290539	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_30282525_30285670_30285772_30285988_30286074_30286164_30286265_30286443_30286543_30287479_30287570_30289153
transcript_49883.known	chr2	+	1851	6	FSM	ENSMUSG00000026856.15	ENSMUST00000137248.8	1851	6	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_4	153.07958714342	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTGAGCATACATTACTT	NA	False	NA	8	True	AATAAA	-15	NA	30282450	30290540	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_30282525_30285670_30285772_30286164_30286265_30286443_30286543_30287479_30287570_30289153
transcript_49889.known	chr2	+	2586	10	FSM	ENSMUSG00000039515.12	ENSMUST00000042055.10	2586	10	0	0	0	0	multi-exon	TRUE	canonical	3	440	junction_4	51.3501655905104	781	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTGTGTGAGACATCTTT	NA	False	NA	17	True	ATTAAA	-20	NA	30306050	30337817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_30306345_30316410_30316509_30318327_30318415_30321972_30322099_30325575_30325694_30327581_30327682_30328240_30328366_30329675_30329777_30333301_30333410_30336388
transcript_49893.known	chr2	+	1259	3	FSM	ENSMUSG00000085275.2	ENSMUST00000145413.2	1259	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGGTGGATGAGACAATA	8536	False	NA	NA	False	NA	NA	NA	30424740	30429034	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_30425066_30426390_30426482_30428191
transcript_49894.known	chr2	+	819	2	FSM	ENSMUSG00000047363.5	ENSMUST00000102853.4	819	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTTGATCTACTTCTGG	NA	False	NA	NA	False	NA	NA	NA	30485051	30498955	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_30485087_30498171
transcript_49897.nnic	chr2	-	1306	8	NNC	ENSMUSG00000044320.15	novel	1672	7	NA	NA	-3872	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	12.1352917609116	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTCTAGGTGCCTGATTG	NA	False	NA	NA	False	AGTAAA	-3	NA	30697545	30685577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_30685818_30686156_30686296_30686412_30686579_30687879_30687993_30690735_30690829_30690925_30691014_30695078_30695166_30697165
transcript_4990.known	chr1	+	1025	5	FSM	ENSMUSG00000026568.7	ENSMUST00000027853.6	1025	5	0	0	0	0	multi-exon	FALSE	canonical	3	408	junction_4	28.8704000665041	1313	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATACCCCCCACTTCATCTT	NA	False	NA	107	True	AATAAA	-16	NA	165288605	165308783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_165289081_165302522_165302564_165305789_165305875_165307035_165307148_165308471
transcript_49900.known	chr2	-	1672	7	FSM	ENSMUSG00000044320.15	ENSMUST00000050003.9	1672	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_6	6.6248689714506	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGCCAGAGTTTTTCTCTG	NA	False	NA	NA	False	GATAAA	-16	NA	30691719	30685312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_30685818_30686156_30686296_30686412_30686579_30687879_30687993_30690735_30690829_30690925_30691014_30691151
transcript_49906.known	chr2	+	763	5	FSM	ENSMUSG00000026857.10	ENSMUST00000152374.8	763	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	255.383535099661	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGAGTTTCTGCGCCGCTGC	NA	False	NA	NA	False	NA	NA	NA	30697953	30712397	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_30698096_30705370_30705511_30709640_30709845_30710460_30710714_30712373
transcript_49907.known	chr2	+	837	4	FSM	ENSMUSG00000026857.10	ENSMUST00000129712.3	837	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	226.212780855155	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCGAGGAGCGCCAGGAGAA	NA	False	NA	NA	False	NA	NA	NA	30698124	30712564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_30698378_30709640_30709781_30710460_30710714_30712373
transcript_49909.known	chr2	+	453	3	FSM	ENSMUSG00000026857.10	ENSMUST00000128303.7	453	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	222.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCCTGCCACTCTTCAGG	NA	False	NA	NA	False	NA	NA	NA	30698201	30710533	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_30698378_30709640_30709845_30710460
transcript_49912.known	chr2	+	1387	4	FSM	ENSMUSG00000026857.10	ENSMUST00000041830.10	1387	4	0	0	0	0	multi-exon	FALSE	canonical	3	480	junction_2	33.3466640010661	1513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTGTGTGGATGTATGT	NA	False	NA	27	True	AATAAA	-33	NA	30697837	30713045	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_30698096_30709640_30709845_30710460_30710714_30712373
transcript_49913.known	chr2	+	1192	4	FSM	ENSMUSG00000026857.10	ENSMUST00000138889.8	1192	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_2	216.499422632025	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGATGCCCCAGGCAGTCT	NA	False	NA	11	True	AATAAA	-17	NA	30697952	30713029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_30698096_30709640_30709781_30710460_30710714_30712373
transcript_49917.known	chr2	-	4147	6	FSM	ENSMUSG00000039483.11	ENSMUST00000041726.4	4147	6	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_2	13.3356664625357	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTGTCTTTGTATGACA	NA	False	NA	-19	True	ATTAAA	-19	NA	30720345	30713108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_30714517_30714652_30714740_30715463_30715573_30715666_30715774_30716934_30717111_30718085
transcript_49921.known	chr2	-	2792	5	FSM	ENSMUSG00000039483.11	ENSMUST00000148036.7	2792	5	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_4	10.6858551365813	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTGTCTTTGTATGACA	1761	False	NA	-19	True	ATTAAA	-19	NA	30718266	30713108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_30714517_30714652_30715573_30715666_30715774_30716934_30717111_30718085
transcript_49924.known	chr2	-	703	3	FSM	ENSMUSG00000050737.14	ENSMUST00000056046.10	703	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	39	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGACAGGATTGACCAACA	9920	False	NA	NA	False	CATAAA	-4	NA	30791800	30782293	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_30782839_30790878_30790962_30791725
transcript_49926.known	chr2	-	3647	3	FSM	ENSMUSG00000050737.14	ENSMUST00000102852.6	3647	3	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	10.5	466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTGTGGTCATGATGTC	8411	False	NA	NA	False	NA	NA	NA	30793309	30779482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_30782839_30790878_30790962_30793101
transcript_49927.known	chr2	+	2809	5	FSM	ENSMUSG00000026848.15	ENSMUST00000156711.8	2809	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	43.5918570377542	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTTTCCTGAGCTTTTCC	NA	False	NA	10	True	AATAAA	-15	NA	30843198	30849024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_30843236_30843763_30844021_30845779_30845966_30846459_30846588_30846823
transcript_49930.known	chr2	-	1401	5	FSM	ENSMUSG00000026849.19	ENSMUST00000028200.9	1401	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	220.841996685413	1966	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGTGGCTTTGTGTGTCTT	NA	False	NA	-8	True	TTTAAA	-30	NA	30857945	30850638	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_30851210_30853486_30853615_30853705_30853882_30857101_30857368_30857685
transcript_49931.known	chr2	-	1605	4	FSM	ENSMUSG00000026849.19	ENSMUST00000137694.8	1605	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	239.033238042095	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGATAACGTTTTATT	NA	False	NA	-61	True	NA	NA	NA	30857884	30850691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_30851210_30853486_30853615_30853705_30853882_30857101
transcript_49935.known	chr2	-	1984	9	FSM	ENSMUSG00000026851.10	ENSMUST00000028205.10	1984	9	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_7	16.1240309786356	1135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAAAAAAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30871953	30862188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_30863314_30863703_30863803_30863912_30864050_30865902_30866101_30867903_30867982_30868906_30868978_30870010_30870063_30871494_30871555_30871789
transcript_49936.known	chr2	+	5088	25	FSM	ENSMUSG00000026854.17	ENSMUST00000102849.11	5088	25	0	0	0	0	multi-exon	TRUE	canonical	1	7	junction_21	9.09889721645187	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTGGTGAACCTATCTA	NA	False	NA	NA	False	AATAAA	-17	NA	30872290	30913598	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_30872411_30886059_30886160_30888784_30888881_30890068_30890123_30892567_30892631_30892927_30893060_30894415_30894513_30894943_30895014_30896395_30896510_30897790_30897870_30900177_30900626_30900990_30901135_30901392_30901509_30901634_30901808_30902318_30902414_30906299_30906334_30906504_30906551_30907140_30907322_30907396_30907524_30907693_30907864_30907944_30908027_30908726_30908836_30909796_30909900_30910840_30910913_30911335
transcript_49939.nic	chr2	+	1292	4	ISM	ENSMUSG00000026854.17	ENSMUST00000061544.11	1360	10	-287	6763	-203	751	5prime_fragment	FALSE	canonical	3	19	junction_1	5.35412613473634	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAACAGAG	NA	False	NA	NA	False	NA	NA	NA	30872087	30890841	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_30872411_30886059_30886160_30888784_30888881_30890068
transcript_49940.nnic	chr2	+	769	4	NNC	ENSMUSG00000026854.17	novel	622	2	NA	NA	-631	332	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_1	12.5521135891752	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTCTGTCATCGCTGTGT	7569	False	NA	NA	False	AATATA	-11	NA	30909199	30911725	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_30909404_30909796_30909900_30910840_30910913_30911335
transcript_49941.nnic	chr2	+	1744	4	NNC	ENSMUSG00000026854.17	novel	622	2	NA	NA	-682	-945	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_1	12.5521135891752	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCCTAGCTTGTACTGTG	7518	False	NA	16	True	AATAAA	-16	NA	30909148	30912649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_30909404_30909796_30909900_30910840_30910913_30911335
transcript_49946.known	chr2	-	1859	15	FSM	ENSMUSG00000075415.14	ENSMUST00000100208.9	1859	15	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_6	25.508001945768	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAACAAAAAGCATTGGAG	4974	False	NA	10	True	NA	NA	NA	31031814	30923010	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_30923201_30926129_30926267_30926553_30926676_30927167_30927301_30930416_30930527_30942996_30943180_30944035_30944231_30945439_30945587_30948900_30949030_30972985_30973091_30974034_30974098_30986038_30986187_30987105_30987163_30995253_30995370_31031790
transcript_49949.known	chr2	-	1910	9	FSM	ENSMUSG00000075415.14	ENSMUST00000113552.9	1910	9	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_4	13.559475469206	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTTTTGTGTCTTCTT	4837	False	NA	-13	True	NA	NA	NA	31031951	30943246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_30944231_30945439_30945587_30948900_30949030_30972985_30973091_30974034_30974098_30986038_30986187_30987105_30987163_30995253_30995370_31031790
transcript_49952.nic	chr2	-	810	2	ISM	ENSMUSG00000075415.14	ENSMUST00000136181.8	635	6	-69	49227	-16	-8703	5prime_fragment	FALSE	canonical	3	166	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTTAACTTAGGTTTGCT	4752	False	NA	NA	False	ATTAAA	-9	NA	31032036	30994805	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_30995370_31031790
transcript_49956.known	chr2	-	920	2	FSM	ENSMUSG00000087269.2	ENSMUST00000133550.2	920	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAATCGCCGGG	8886	False	NA	NA	False	NA	NA	NA	31042303	31040652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_31041263_31041993
transcript_49958.known	chr2	+	1534	14	FSM	ENSMUSG00000000194.14	ENSMUST00000172422.8	1534	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	124.164616823819	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTCTTTTTTTTTTT	NA	False	NA	NA	False	ACTAAA	-16	NA	31042362	31082125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_31042494_31057032_31057154_31058173_31058227_31058808_31058892_31061953_31062094_31064213_31064252_31066909_31066967_31067796_31067908_31068265_31068400_31073591_31073668_31074809_31074884_31075500_31075619_31078694_31078826_31081858
transcript_49966.nnic	chr2	-	435	3	Antisense	novelGene_ENSMUSG00000055632.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0.5	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAACCCCTCCCCCCAACC	NA	False	NA	NA	False	NA	NA	NA	31345616	31341874	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr2_-_31342058_31344859_31345028_31345532
transcript_4997.known	chr1	-	2285	6	FSM	ENSMUSG00000026566.16	ENSMUST00000111435.9	2285	6	0	0	0	0	multi-exon	TRUE	canonical	3	372	junction_2	205.630737002035	422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGTTGTCTGCTTGTTTT	NA	False	NA	-1	True	AATACA	-19	NA	165462098	165419808	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_165421247_165429318_165429425_165432178_165432312_165433177_165433392_165436006_165436174_165461871
transcript_49974.known	chr2	+	1696	16	FSM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	0	0	0	0	multi-exon	FALSE	canonical	3	2348	junction_1	252.729068811291	10387	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTCTCTGCGTGTGTGCC	NA	False	NA	27	True	ATTAAA	-22	NA	31360218	31410684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
transcript_49996.known	chr2	+	3268	19	FSM	ENSMUSG00000026843.16	ENSMUST00000113482.8	3268	19	0	0	0	0	multi-exon	TRUE	canonical	3	465	junction_18	67.3624112131124	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTTTTGTTTGCTGGCC	493	False	NA	36	True	AATAAA	-37	NA	31462662	31507538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509_31505638_31506190
transcript_49998.nnic	chr2	+	3335	19	NNC	ENSMUSG00000026843.16	novel	3268	19	NA	NA	-13	0	intron_retention	FALSE	canonical	3	154	junction_18	127.170586318894	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTAGTCTGTTTTGTTT	480	False	NA	29	True	AATAAA	-30	NA	31462649	31507531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509_31505699_31506190
transcript_49999.known	chr2	+	3648	18	FSM	ENSMUSG00000026843.16	ENSMUST00000055244.13	3648	18	0	0	0	0	multi-exon	FALSE	canonical	3	582	junction_10	50.5976051514182	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTAGTCTGTTTTGTTT	659	False	NA	29	True	AATAAA	-30	NA	31462828	31507531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509
transcript_5.known	ERCC-00004	+	507	1	FSM	ERCC-00004A	DQ516752	507	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16039	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	GATAAA	-39	NA	0	507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00004_+_0_500
transcript_50.known	ERCC-00097	+	506	1	FSM	ERCC-00097A	DQ516758	506	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	506	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00097_+_0_500
transcript_50004.nnic	chr2	+	749	3	NNC	ENSMUSG00000026843.16	novel	372	5	NA	NA	-13	547	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	350	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATATGGATGACTGACTCAA	480	False	NA	NA	False	AATAAA	-20	NA	31462649	31475460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_31462966_31473166_31473273_31475133
transcript_50006.known	chr2	+	1686	9	FSM	ENSMUSG00000039356.16	ENSMUST00000038474.14	1686	9	0	0	0	0	multi-exon	FALSE	canonical	3	842	junction_6	46.6797600679352	1689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGGAGTCTCACCGCGT	NA	False	NA	NA	False	AATAAA	-16	NA	31560726	31571361	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_31560874_31562483_31562586_31564526_31564573_31564706_31564797_31565850_31565917_31566679_31566749_31568462_31568640_31569862_31569992_31570501
transcript_50007.known	chr2	+	2076	8	FSM	ENSMUSG00000039356.16	ENSMUST00000149094.8	2076	8	0	0	0	0	multi-exon	FALSE	canonical	3	842	junction_5	49.3699073839727	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAAGAAAACCAAAGA	NA	False	NA	-20	True	NA	NA	NA	31560730	31570992	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_31560874_31562483_31562586_31564526_31564573_31564706_31564797_31565850_31566749_31568462_31568640_31569862_31569992_31570501
transcript_50009.known	chr2	+	3117	6	FSM	ENSMUSG00000001864.14	ENSMUST00000001920.13	3117	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	6.46838465151849	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTGTCTTTGTGTTTCTT	NA	False	NA	4	True	AATAAA	-14	NA	31840150	31863454	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_31840394_31840540_31840603_31852226_31852294_31855082_31855125_31859641_31859805_31860914
transcript_5001.known	chr1	-	2171	5	FSM	ENSMUSG00000026566.16	ENSMUST00000068705.13	2171	5	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_1	201.827896981562	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGTTGTCTGCTTGTTTT	NA	False	NA	-1	True	AATACA	-19	NA	165462090	165419808	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_165421247_165432178_165432312_165433177_165433392_165436006_165436174_165461871
transcript_50010.known	chr2	+	519	5	FSM	ENSMUSG00000001864.14	ENSMUST00000128271.8	519	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	13.8270568090248	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCTGCCTCTCCCTCTGCG	NA	False	NA	NA	False	NA	NA	NA	31850359	31861036	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_31850485_31852226_31852294_31855082_31855125_31859641_31859805_31860914
transcript_50013.known	chr2	+	3569	8	FSM	ENSMUSG00000001855.16	ENSMUST00000138012.2	3569	8	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_2	26.8617017407342	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAATTCAACTGAGGTAA	NA	False	NA	NA	False	ATTAAA	-28	NA	31923987	31943987	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_31924982_31928113_31928185_31929331_31929489_31932428_31932582_31937414_31937587_31941020_31941161_31941785_31941811_31942130
transcript_50014.nic	chr2	+	1042	7	ISM	ENSMUSG00000001855.16	ENSMUST00000065398.13	6605	36	-84	69146	-84	3269	5prime_fragment	FALSE	canonical	3	103	junction_4	13.4039795085887	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTAAGCATGTGAAAGATTA	NA	False	NA	8	True	NA	NA	NA	31864363	31873237	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_31864621_31866511_31866708_31867775_31867928_31869701_31869901_31870521_31870593_31872622_31872687_31873134
transcript_50019.known	chr2	+	738	4	FSM	ENSMUSG00000001855.16	ENSMUST00000130975.2	738	4	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	1.88561808316413	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAAGTGGAAGGCTTTTAA	NA	False	NA	NA	False	ATTAAA	-16	NA	31864497	31869968	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_31864621_31866511_31866708_31867775_31867928_31869701
transcript_50022.known	chr2	+	6605	36	FSM	ENSMUSG00000001855.16	ENSMUST00000065398.13	6605	36	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_30	27.3468425219141	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGGGTATTTATTTGGG	NA	False	NA	32	True	ATTAAA	-26	NA	31864447	31942383	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_31864621_31866511_31866708_31867775_31867928_31869701_31869901_31870521_31870593_31872622_31872687_31873134_31873239_31878165_31878273_31879084_31879152_31880246_31880374_31881275_31881438_31884534_31884989_31886387_31886564_31887964_31888063_31892603_31892691_31892892_31893043_31894324_31894484_31896700_31896805_31900194_31900378_31901023_31901098_31901196_31901281_31907037_31907350_31908206_31908369_31910269_31910370_31915254_31915331_31916859_31916939_31920718_31920810_31921261_31921321_31923214_31924982_31928113_31928185_31929334_31929489_31932428_31932582_31937414_31937587_31941020_31941161_31941785_31941811_31942130
transcript_50023.known	chr2	+	1947	2	FSM	ENSMUSG00000051373.6	ENSMUST00000057423.6	1947	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCCTGTGTGGTTCTTA	NA	False	NA	NA	False	AATACA	-22	NA	31985539	32000832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_31986275_31999620
transcript_50024.known	chr2	-	951	2	FSM	ENSMUSG00000086216.2	ENSMUST00000128298.2	951	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTTTCTTGTTTTTATT	NA	False	NA	NA	False	AATAAA	-4	NA	32126394	32122793	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_32123532_32126181
transcript_50025.known	chr2	+	2918	20	FSM	ENSMUSG00000039254.17	ENSMUST00000036473.16	2918	20	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_15	17.3977423950124	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTATGTTATTTATTGA	NA	False	NA	17	True	AATAAA	-18	NA	32126601	32145017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_32126754_32127371_32127524_32130438_32130546_32130676_32130728_32131664_32131812_32132904_32133017_32133476_32133543_32133630_32133725_32134245_32134402_32135558_32135690_32136026_32136123_32137548_32137642_32138626_32138724_32140481_32140575_32140800_32140922_32141273_32141372_32141921_32142036_32142887_32143015_32143727_32143906_32144284
transcript_50035.known	chr2	-	2005	7	FSM	ENSMUSG00000002550.17	ENSMUST00000002625.15	2005	7	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_2	20.9741904889478	295	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTTGTCCTGTTTTATTT	NA	False	NA	NA	False	AATAAA	-17	NA	32150171	32145013	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_32146224_32146629_32146679_32148101_32148197_32148288_32148432_32148582_32148680_32149591_32149752_32149920
transcript_50042.known	chr2	+	318	1	FSM	ENSMUSG00000066068.6	ENSMUST00000118269.2	318	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4529	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACCCTCCCCCAATAAAA	NA	False	NA	NA	False	NA	NA	NA	32161856	32162174	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_32161900_32162200
transcript_50043.known	chr2	+	4361	26	FSM	ENSMUSG00000002546.18	ENSMUST00000239447.2	4361	26	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_7	19.1852443299532	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGGGTGTTCGTCATTGG	NA	False	NA	30	True	AATAAA	-23	NA	32178264	32197933	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_32178409_32182104_32182228_32186637_32186734_32186976_32187021_32187119_32187184_32187532_32187590_32187765_32187847_32188611_32188651_32188897_32188961_32189043_32189138_32189215_32189323_32191696_32191756_32192153_32192296_32192714_32192805_32192907_32193016_32193156_32193245_32193595_32193934_32194153_32194268_32194645_32194892_32194970_32195047_32195221_32195308_32195486_32195706_32195784_32195888_32195988_32196096_32196171_32196329_32196417
transcript_50052.known	chr2	-	522	5	FSM	ENSMUSG00000044627.12	ENSMUST00000113400.3	522	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_4	1473.86522026269	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTATTGGGAGGGGTGGGT	NA	False	NA	-114	True	NA	NA	NA	32178081	32168929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_32169144_32170720_32170816_32171697_32171823_32177608_32177658_32178042
transcript_50058.known	chr2	-	580	4	FSM	ENSMUSG00000044627.12	ENSMUST00000113397.9	580	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	1606.82426612938	5601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	False	NA	-12	True	AATAAA	-14	NA	32178017	32168827	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_32169144_32170720_32170816_32177608_32177658_32177897
transcript_50065.known	chr2	-	2618	2	FSM	ENSMUSG00000039195.5	ENSMUST00000146423.2	2618	2	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	0	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTATTTTGATGTCTGA	NA	False	NA	NA	False	AATAAA	-18	NA	32271874	32267108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_32269546_32271693
transcript_50066.known	chr2	-	680	2	FSM	ENSMUSG00000039195.5	ENSMUST00000048792.5	680	2	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_1	0	1754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTCTTCTTTGTGCCCA	NA	False	NA	3	True	ATTAAA	-21	NA	32271950	32269112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_32269546_32271703
transcript_5007.known	chr1	-	643	3	FSM	ENSMUSG00000026566.16	ENSMUST00000194437.6	643	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	400.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAACGTTGCATGGTGAAG	NA	False	NA	NA	False	NA	NA	NA	165462082	165420981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_165421247_165436006_165436174_165461871
transcript_50071.known	chr2	-	3278	10	FSM	ENSMUSG00000026819.16	ENSMUST00000113310.9	3278	10	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_4	7.53919797941661	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACAATGGAGCCAGGGTTT	8153	False	NA	-9	True	AATAAA	-14	NA	32341457	32304501	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_32306335_32306420_32306572_32307103_32307272_32307357_32307466_32307735_32307889_32309059_32309219_32310316_32310429_32311314_32311403_32311484_32311612_32341078
transcript_50073.known	chr2	+	4650	2	FSM	ENSMUSG00000039164.3	ENSMUST00000048431.3	4650	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATACACACTCCTCTTGT	NA	False	NA	NA	False	ATTAAA	-18	NA	32340468	32346965	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_32342962_32344808
transcript_50077.known	chr2	+	869	4	FSM	ENSMUSG00000026810.13	ENSMUST00000028151.7	869	4	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_1	58.5965490072202	1908	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCATCCTTGCTCTG	4773	False	NA	23	True	AATAAA	-24	NA	32460869	32463591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_32460925_32461217_32461308_32462308_32462412_32462970
transcript_50078.known	chr2	+	1412	3	FSM	ENSMUSG00000026810.13	ENSMUST00000140592.8	1412	3	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_1	64.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCGTTGGTGTTTGTCTCTC	4773	False	NA	7	True	AATAAA	-8	NA	32460869	32463575	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_32460925_32461217_32461308_32462308
transcript_50079.known	chr2	+	1577	10	FSM	ENSMUSG00000046854.17	ENSMUST00000055304.14	1577	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	2.21108319357027	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAAATGGAGGTTCACGGGA	9633	False	NA	NA	False	ATTAAA	-30	NA	32465729	32473794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_32465907_32466662_32466864_32467883_32467938_32468120_32468276_32468491_32468617_32468947_32468983_32469069_32469126_32469952_32470066_32470290_32470442_32473284
transcript_50081.known	chr2	+	3626	6	FSM	ENSMUSG00000079442.13	ENSMUST00000102818.11	3626	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	7.22218803410712	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTCAACCACTTCCTCCA	NA	False	NA	16	True	AATAAA	-18	NA	32477106	32489710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_32477240_32477592_32477694_32479456_32479643_32484001_32484415_32485705_32485814_32487025
transcript_50082.known	chr2	+	2361	7	FSM	ENSMUSG00000026811.19	ENSMUST00000183538.8	2361	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_5	29.5390513651938	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTGTTCTGTGTCTTTA	3383	False	NA	7	True	AATAAA	-16	NA	32497051	32510818	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_32497124_32498053_32498109_32499237_32499329_32502235_32502416_32504792_32505181_32508508_32508617_32509351
transcript_50084.known	chr2	+	2536	7	FSM	ENSMUSG00000026811.19	ENSMUST00000095045.9	2536	7	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	37.4718412796714	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCAGTGTTCTGTGTCTT	3354	False	NA	5	True	AATAAA	-14	NA	32497022	32510816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_32497124_32498053_32498238_32499237_32499329_32502235_32502416_32504792_32505200_32508508_32508617_32509351
transcript_50086.known	chr2	+	2402	6	FSM	ENSMUSG00000026811.19	ENSMUST00000113290.8	2402	6	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	35.6202189774291	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCAGTGTTCTGTGTCTT	3304	False	NA	5	True	AATAAA	-14	NA	32496972	32510816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_32497124_32499237_32499329_32502235_32502416_32504792_32505200_32508508_32508617_32509351
transcript_50088.known	chr2	+	2063	7	FSM	ENSMUSG00000026817.15	ENSMUST00000113277.8	2063	7	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	98.788775790685	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGAAGTGAGTGTATTGA	NA	False	NA	13	True	AATAAA	-17	NA	32515448	32525066	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_32515551_32518462_32518501_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
transcript_50094.nic	chr2	+	1014	6	ISM	ENSMUSG00000026817.15	ENSMUST00000113277.8	2063	7	2770	1191	-183	463	3prime_fragment	FALSE	canonical	3	200	junction_1	44.5268458348444	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTTAGGATTGCTCCTTTC	NA	False	NA	NA	False	ACTAAA	-15	NA	32518218	32523875	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_32518501_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
transcript_50095.nic	chr2	+	2063	6	ISM	ENSMUSG00000026817.15	ENSMUST00000113277.8	2063	7	2916	-4	-37	0	3prime_fragment	FALSE	canonical	3	200	junction_1	44.5268458348444	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTGAGTGTATTGAAACA	NA	False	NA	17	True	AATAAA	-21	NA	32518364	32525070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_32518501_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
transcript_50097.known	chr2	+	2034	6	FSM	ENSMUSG00000026817.15	ENSMUST00000068271.5	2034	6	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	85.0895998345274	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATAAGAAGTGAGTGTATT	NA	False	NA	11	True	AATAAA	-15	NA	32519515	32525064	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_32519629_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
transcript_50099.known	chr2	+	3403	15	FSM	ENSMUSG00000026814.17	ENSMUST00000167841.8	3403	15	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	47.9038684475993	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAGTTCCAGCAACACAG	582	False	NA	NA	False	AATAAA	-24	NA	32536633	32572681	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_32537037_32547530_32547683_32559434_32559576_32561353_32561520_32562229_32562396_32562848_32562970_32563261_32563437_32563603_32563747_32567564_32567703_32567934_32567974_32568467_32568585_32568902_32569155_32570292_32570348_32571207_32571310_32571448
transcript_50101.known	chr2	+	3422	15	FSM	ENSMUSG00000026814.17	ENSMUST00000009705.14	3422	15	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_1	26.1475405640955	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAAGCTTCAATTAGTTC	555	False	NA	NA	False	AATAAA	-13	NA	32536606	32572670	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_32537037_32547527_32547683_32559434_32559576_32561353_32561520_32562229_32562396_32562848_32562970_32563261_32563437_32563603_32563747_32567564_32567703_32567934_32567974_32568467_32568585_32568902_32569155_32570292_32570348_32571207_32571310_32571448
transcript_50102.known	chr2	-	2273	15	FSM	ENSMUSG00000009566.13	ENSMUST00000028148.11	2273	15	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_8	41.2442327446381	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTATTCTCCTAGCTCCC	NA	False	NA	-13	True	AATAAA	-20	NA	32584197	32572620	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_32573481_32574761_32574829_32575325_32575402_32575730_32575882_32576565_32576656_32576749_32576898_32577156_32577235_32577424_32577528_32577613_32577676_32577771_32577850_32577931_32578047_32581201_32581267_32582462_32582517_32582604_32582734_32584000
transcript_50106.known	chr2	+	258	2	FSM	ENSMUSG00000026814.17	ENSMUST00000139770.2	258	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACAGCAAGTCCCTGCTTG	953	False	NA	NA	False	NA	NA	NA	32537004	32540379	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_32537037_32540153
transcript_50108.known	chr2	-	1733	7	FSM	ENSMUSG00000009555.17	ENSMUST00000009699.16	1733	7	0	0	0	0	multi-exon	FALSE	canonical	3	1063	junction_2	88.3259430870807	517	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGCGTTTCCTGTGTTC	NA	False	NA	NA	False	ATTAAA	-25	NA	32602796	32597449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_32598302_32599478_32599628_32599784_32599957_32600054_32600222_32600488_32600580_32602042_32602125_32602576
transcript_50109.known	chr2	+	3107	11	FSM	ENSMUSG00000059013.13	ENSMUST00000113242.5	3107	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	3.98622628559895	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATCTTTAAACTGG	1545	False	NA	NA	False	NA	NA	NA	32617717	32645524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_32617819_32627530_32627571_32634762_32634892_32635846_32636302_32637033_32637159_32639164_32639698_32640963_32641080_32641525_32641698_32642625_32642738_32643000_32643208_32644407
transcript_50112.known	chr2	+	1536	5	FSM	ENSMUSG00000009563.17	ENSMUST00000009707.14	1536	5	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_1	20.9105236663265	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTGACCAAAGTTTCTTAC	589	False	NA	9	True	AATAAA	-20	NA	32647245	32652256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_32647463_32648682_32648949_32649538_32649715_32650600_32650729_32651507
transcript_50114.known	chr2	+	915	5	FSM	ENSMUSG00000009563.17	ENSMUST00000156617.8	915	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	95.4214336509361	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCTCTGAGAAGCCCAGG	610	False	NA	NA	False	NA	NA	NA	32647266	32651742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_32647463_32648768_32648949_32649538_32649715_32650600_32650729_32651507
transcript_50117.known	chr2	+	1244	4	FSM	ENSMUSG00000009563.17	ENSMUST00000175763.8	1244	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	110.807139761941	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTGACCAAAGTTTCTTAC	615	False	NA	9	True	AATAAA	-20	NA	32647271	32652256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_32647463_32649538_32649715_32650600_32650729_32651507
transcript_50119.known	chr2	+	952	5	FSM	ENSMUSG00000053746.9	ENSMUST00000066352.6	952	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	3.34477204006491	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGAAGCTTCCTGTGGGGT	8191	False	NA	6	True	ATTAAA	-16	NA	32665797	32667609	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_32665908_32666315_32666536_32666718_32666819_32666994_32667041_32667133
transcript_50121.known	chr2	+	908	4	FSM	ENSMUSG00000053746.9	ENSMUST00000138214.2	908	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	3.85861230093008	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGGCCACATCAGTCTGT	8270	False	NA	NA	False	NA	NA	NA	32665876	32667461	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_32665908_32666315_32666819_32666994_32667041_32667133
transcript_50122.nic	chr2	-	880	7	ISM	ENSMUSG00000026797.17	ENSMUST00000077458.7	3616	20	-7	26734	-3	1819	5prime_fragment	FALSE	canonical	3	30	junction_4	2.80871659105879	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAATGATTTTATCTGTT	5185	False	NA	NA	False	NA	NA	NA	32737221	32704706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_32705040_32707297_32707402_32708438_32708518_32709845_32709923_32711846_32711929_32713547_32713598_32737066
transcript_50123.known	chr2	-	488	2	FSM	ENSMUSG00000087496.2	ENSMUST00000151820.2	488	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCTCTTGGCTTAAAACT	9624	False	NA	NA	False	CATAAA	-40	NA	32766013	32763766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_32763993_32765751
transcript_50125.known	chr2	+	3714	14	FSM	ENSMUSG00000026796.17	ENSMUST00000028135.15	3714	14	0	0	0	0	multi-exon	TRUE	canonical	3	292	junction_12	30.0169577319103	244	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTCATGTGCTGCTGGG	8857	False	NA	19	True	AATAAA	-19	NA	32766125	32815266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_32766417_32795780_32795912_32799860_32799990_32801352_32801459_32802431_32802600_32809004_32809121_32809507_32809613_32809714_32809878_32810964_32811153_32812080_32812237_32812569_32812687_32812867_32812976_32813058_32813171_32813442
transcript_5013.nnic	chr1	+	338	2	Antisense	novelGene_ENSMUSG00000040723.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGGAGCTCTTGACTCTAG	NA	False	NA	NA	False	NA	NA	NA	165482798	165483652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr1_+_165483025_165483540
transcript_50132.known	chr2	+	729	7	FSM	ENSMUSG00000038900.18	ENSMUST00000102811.10	729	7	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_1	2477.85254246943	6593	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGGGCTTGGCTGCTTTTT	5822	False	NA	22	True	AATAAA	-21	NA	32851751	32854055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_32851973_32852060_32852135_32852585_32852685_32852996_32853079_32853508_32853596_32853752_32853866_32854002
transcript_5015.known	chr1	+	2317	5	FSM	ENSMUSG00000040713.13	ENSMUST00000140769.2	2317	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	243.14347616171	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTTGGACTGATTTCTG	NA	False	NA	NA	False	ATTAAA	-18	NA	165591314	165602877	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_165591708_165592169_165592324_165597381_165597502_165598200_165598386_165601412
transcript_5016.known	chr1	+	2163	4	FSM	ENSMUSG00000040713.13	ENSMUST00000111432.10	2163	4	0	0	0	0	multi-exon	FALSE	canonical	3	459	junction_1	24.0554914035583	1994	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTTGGACTGATTTCTG	NA	False	NA	NA	False	ATTAAA	-18	NA	165591314	165602877	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_165591708_165597381_165597502_165598200_165598386_165601412
transcript_50164.known	chr2	+	1242	7	FSM	ENSMUSG00000038900.18	ENSMUST00000126610.2	1242	7	0	0	0	0	multi-exon	FALSE	canonical	3	2580	junction_6	1457.06650690885	27150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCAATTGTTGGGGCTGCA	5641	False	NA	24	True	AATAAA	-25	NA	32851570	32854508	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996_32853079_32853508_32853596_32853752_32853866_32854002
transcript_50165.known	chr2	-	4030	26	FSM	ENSMUSG00000026792.17	ENSMUST00000113200.8	4030	26	0	0	0	0	multi-exon	TRUE	canonical	3	22	junction_16	3.74165738677394	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTACACAGTTTGCATAGA	NA	False	NA	-5	True	AATAAA	-21	NA	32851626	32815231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_32816914_32817996_32818143_32818663_32818746_32819585_32819718_32822102_32822202_32823826_32823923_32825179_32825261_32826447_32826523_32828808_32828897_32830252_32830353_32831814_32831886_32834716_32834762_32835453_32835594_32835862_32835986_32836103_32836134_32837802_32837934_32841104_32841196_32843375_32843498_32844213_32844299_32845192_32845262_32846486_32846565_32847260_32847306_32848169_32848227_32849528_32849626_32851055_32851268_32851573
transcript_50166.known	chr2	+	1417	4	FSM	ENSMUSG00000038900.18	ENSMUST00000154340.8	1417	4	0	0	0	0	multi-exon	FALSE	canonical	3	2580	junction_3	1756.95310757636	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5811	False	NA	24	True	AATAAA	-23	NA	32851740	32854057	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_32852135_32852585_32852685_32852996_32853866_32854002
transcript_50167.known	chr2	+	2863	3	FSM	ENSMUSG00000038900.18	ENSMUST00000134912.7	2863	3	0	0	0	0	multi-exon	FALSE	canonical	3	6045	junction_1	239	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5802	False	NA	NA	False	NA	NA	NA	32851731	32855357	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_32852135_32852585_32852685_32852996
transcript_50168.known	chr2	+	600	4	FSM	ENSMUSG00000038900.18	ENSMUST00000125415.3	600	4	0	0	0	0	multi-exon	FALSE	canonical	3	5241	junction_1	528.984771887517	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTTGGCTGGTGCAATC	5822	False	NA	NA	False	NA	NA	NA	32851751	32853323	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996
transcript_50169.known	chr2	-	358	5	FSM	ENSMUSG00000026792.17	ENSMUST00000124492.8	358	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	13.7658998979362	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGCAGTCTTGTTCAGAC	NA	False	NA	NA	False	AAAAAG	-1	NA	32851605	32847260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_32847306_32848169_32848227_32849528_32849626_32851055_32851191_32851581
transcript_50170.known	chr2	-	2108	10	FSM	ENSMUSG00000026791.15	ENSMUST00000028129.13	2108	10	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_4	8.32666399786453	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAACTTCAGTGGAGCCAGA	3950	False	NA	-13	True	AATAAA	-15	NA	32872094	32863001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_32863745_32864849_32864996_32865325_32865497_32865931_32866041_32866148_32866293_32866872_32867073_32870013_32870114_32871372_32871580_32871732_32871896_32871969
transcript_50174.known	chr2	-	1339	9	FSM	ENSMUSG00000026791.15	ENSMUST00000193695.2	1339	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	58.5742050735646	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGCCTGGGAGCCCCGAG	4015	False	NA	NA	False	NA	NA	NA	32872029	32863596	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_32863745_32864849_32864996_32865325_32865497_32866148_32866293_32866872_32867073_32870013_32870114_32871372_32871580_32871732_32871896_32871969
transcript_50179.known	chr2	-	1989	8	FSM	ENSMUSG00000038831.17	ENSMUST00000113164.3	1989	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	7.60504665954638	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAAAAAACCAAAA	NA	False	NA	NA	False	NA	NA	NA	33261482	33149375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_33150617_33163572_33163666_33166157_33166248_33174836_33174921_33214664_33214716_33226524_33226633_33230724_33230846_33261281
transcript_50180.known	chr2	-	2738	20	FSM	ENSMUSG00000038831.17	ENSMUST00000091039.5	2738	20	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_8	10.7559170084433	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCGTGTCTTGTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	33261490	33026984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_33027722_33031006_33031099_33033055_33033162_33033311_33033405_33035409_33035516_33036581_33036666_33045299_33045352_33047783_33047942_33048921_33049049_33058192_33058261_33062429_33062524_33064422_33064561_33150489_33150617_33163572_33163666_33166157_33166248_33174836_33174921_33214664_33214716_33226524_33226633_33230724_33230846_33261281
transcript_50181.known	chr2	+	3339	5	FSM	ENSMUSG00000004105.9	ENSMUST00000004208.7	3339	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	1.11803398874989	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACCCACACTGTGTGCTG	NA	False	NA	NA	False	AATAAA	-21	NA	33106080	33137729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_33106466_33118186_33119045_33132211_33132406_33133690_33133962_33136098
transcript_50182.known	chr2	-	6602	3	FSM	ENSMUSG00000068966.11	ENSMUST00000113158.8	6602	3	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGTGGTCTCTGTGTT	NA	False	NA	0	True	AATAAA	-18	NA	33321336	33296119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_33302508_33318112_33318233_33321242
transcript_50183.known	chr2	-	664	2	FSM	ENSMUSG00000068966.11	ENSMUST00000134589.2	664	2	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAACAAAGCCCTTCGGAG	NA	False	NA	NA	False	NA	NA	NA	33321329	33301930	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_33302508_33321242
transcript_50184.known	chr2	-	1828	4	FSM	ENSMUSG00000026788.14	ENSMUST00000113156.2	1828	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	10.6770782520313	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGTTCTCATCCTGGCC	NA	False	NA	NA	False	ATTAAA	-20	NA	33358517	33343533	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_33345136_33352277_33352370_33354925_33354987_33358444
transcript_50187.known	chr2	-	4998	3	FSM	ENSMUSG00000026788.14	ENSMUST00000028125.12	4998	3	0	0	0	0	multi-exon	TRUE	canonical	3	44	junction_1	8.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTGTTGTTTTCACTCAT	NA	False	NA	-1	True	AATAAA	-25	NA	33358544	33340298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_33345136_33354925_33354987_33358444
transcript_50188.known	chr2	-	487	3	FSM	ENSMUSG00000026788.14	ENSMUST00000126442.2	487	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	3.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCCGATGTAATGAACCC	NA	False	NA	NA	False	AAAACA	-15	NA	33358571	33344899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_33345136_33354925_33355050_33358444
transcript_50192.nnic	chr2	-	1674	2	NIC	ENSMUSG00000026788.14	novel	4998	3	NA	NA	-3	-58	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATATTTCTGAAAGACCAGC	NA	False	NA	NA	False	NA	NA	NA	33358574	33343591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_33345136_33358444
transcript_50193.known	chr2	+	390	2	FSM	ENSMUSG00000086939.2	ENSMUST00000134014.2	390	2	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGATAGATTATCACTAC	NA	False	NA	NA	False	AATAAA	-16	NA	33379793	33393644	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_33379998_33393458
transcript_50195.known	chr2	-	4998	10	FSM	ENSMUSG00000038740.10	ENSMUST00000041555.10	4998	10	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	24.5990063033268	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCCAGTTTGCTGTTATTT	3749	False	NA	-1	True	AATAAA	-20	NA	33777958	33619964	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_33623544_33642320_33642381_33645001_33645058_33692756_33692852_33715059_33715183_33717693_33717824_33724548_33724646_33730170_33730279_33764349_33764473_33777331
transcript_50203.nnic	chr2	-	489	3	NNC	ENSMUSG00000038740.10	novel	520	3	NA	NA	258	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	37	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAAGCTGAAGTGTGTTTT	4471	False	NA	-5	True	AATAAA	-15	NA	33777236	33763625	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_33763860_33764349_33764473_33777104
transcript_50204.known	chr2	-	520	3	FSM	ENSMUSG00000038740.10	ENSMUST00000146892.2	520	3	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	8	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAAGCTGAAGTGTGTTTT	4213	False	NA	-5	True	AATAAA	-15	NA	33777494	33763625	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_33763860_33764349_33764473_33777331
transcript_50206.nnic	chr2	-	537	3	NNC	ENSMUSG00000038740.10	novel	520	3	NA	NA	-75	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	38	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAAGCTGAAGTGTGTTTT	3674	False	NA	-5	True	AATAAA	-15	NA	33778033	33763625	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_33763860_33764349_33764473_33777853
transcript_50207.nnic	chr2	-	1751	3	NNC	ENSMUSG00000087461.3	novel	2668	4	NA	NA	80939	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	11	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTATCTTGGAATTCATACT	NA	False	NA	NA	False	NA	NA	NA	33916802	33908302	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_33909667_33915810_33915970_33916574
transcript_50209.nnic	chr2	-	1692	3	NNC	ENSMUSG00000087461.3	novel	2668	4	NA	NA	80939	-903	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	1	39	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACTGTTTACCCTCAAGA	NA	False	NA	NA	False	NA	NA	NA	33916802	33909203	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_33910509_33915810_33915970_33916574
transcript_50210.nnic	chr2	-	755	3	NNC	ENSMUSG00000087461.3	novel	2668	4	NA	NA	80939	-1840	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	1	23	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGAGCAGAATCTGTGTTA	NA	False	NA	NA	False	NA	NA	NA	33916802	33910140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_33910509_33915810_33915970_33916574
transcript_50211.known	chr2	-	2587	9	FSM	ENSMUSG00000038718.16	ENSMUST00000040638.15	2587	9	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	7.22733526273688	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCGGGTTCTTGTGATGC	832	False	NA	NA	False	NA	NA	NA	34262056	34061734	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_34062986_34065876_34065967_34066760_34066874_34068188_34068355_34094791_34094928_34103263_34103455_34114416_34114659_34260835_34260910_34261732
transcript_50215.known	chr2	-	2858	2	FSM	ENSMUSG00000038718.16	ENSMUST00000155423.3	2858	2	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAATCATGTCT	1084	False	NA	NA	False	TTTAAA	-17	NA	34261804	34258123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_34260910_34261732
transcript_50220.known	chr2	+	1630	11	FSM	ENSMUSG00000038696.15	ENSMUST00000124443.8	1630	11	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	60.6699266523374	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCAAAAACAAAGAAAACTGA	NA	False	NA	NA	False	NA	NA	NA	34296873	34513487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_34297267_34325144_34325235_34334269_34334419_34387712_34387886_34408684_34408862_34423799_34423910_34453066_34453175_34471203_34471345_34487434_34487573_34509856_34509955_34513434
transcript_50232.nnic	chr2	+	1466	3	Genic_Genomic	ENSMUSG00000081992.2	novel	798	1	NA	NA	-152093	55	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGATGGCTACAGCTGCA	NA	False	NA	NA	False	AATAAA	-25	NA	34302917	34455863	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr2_+_34303367_34303540_34303651_34454956
transcript_50235.known	chr2	+	798	1	FSM	ENSMUSG00000081992.2	ENSMUST00000119822.2	798	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	208	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCCAGATTTTTAATGG	NA	False	NA	NA	False	NA	NA	NA	34455010	34455808	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_34455000_34455800
transcript_50236.known	chr2	-	5758	26	FSM	ENSMUSG00000026867.20	ENSMUST00000113099.10	5758	26	0	0	0	0	multi-exon	FALSE	canonical	2	81	junction_18	31.5772069695849	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	5780	False	NA	NA	False	NA	NA	NA	34644573	34566996	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_34568190_34568444_34568643_34571646_34571720_34574193_34574408_34578869_34579058_34580473_34580634_34581117_34581228_34583384_34583515_34585497_34585621_34589837_34589919_34590774_34590863_34594177_34594543_34594647_34594726_34596031_34596152_34596709_34596845_34599123_34599265_34602176_34602351_34605216_34605343_34607264_34607395_34610579_34610741_34615054_34615245_34615390_34615526_34617227_34617315_34618342_34619187_34620474_34620693_34644277
transcript_50239.known	chr2	+	2613	8	FSM	ENSMUSG00000026864.14	ENSMUST00000100171.3	2613	8	0	0	0	0	multi-exon	FALSE	canonical	3	2314	junction_3	220.40537791135	707	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCAGGTGTGTCTTTCTT	NA	False	NA	18	True	ACTAAA	-14	NA	34662106	34666543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562
transcript_5024.known	chr1	-	2201	17	FSM	ENSMUSG00000026565.19	ENSMUST00000184643.8	2201	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6.71635131600484	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAACAAAAACAGACAGAC	9705	False	NA	22	True	NA	NA	NA	165830187	165703025	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_165703086_165703471_165703618_165704545_165704635_165707698_165708045_165719378_165719485_165722473_165722654_165724005_165724152_165725193_165725336_165729708_165729883_165734253_165734349_165736448_165736576_165738856_165739046_165740795_165740919_165742678_165742733_165744490_165744592_165759230_165759297_165830130
transcript_50249.known	chr2	-	1431	8	FSM	ENSMUSG00000070953.14	ENSMUST00000118108.2	1431	8	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_7	117.809081109381	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGCCCACATTTGTATTA	2821	False	NA	-42	True	NA	NA	NA	34689740	34669248	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_34669542_34670608_34670759_34674557_34674708_34675578_34675741_34680514_34680668_34685183_34685342_34687386_34687446_34689434
transcript_5025.known	chr1	-	13022	17	FSM	ENSMUSG00000026565.19	ENSMUST00000160260.9	13022	17	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	5.36153837531729	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACATTGTCTGTGTCTCT	9645	False	NA	-9	True	ATTAAA	-17	NA	165830247	165692722	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_165703618_165704545_165704635_165707698_165708045_165710615_165710688_165719378_165719485_165722473_165722654_165724005_165724152_165725193_165725336_165729708_165729883_165734253_165734349_165736448_165736576_165738856_165739046_165740795_165740919_165742678_165742733_165744490_165744592_165759230_165759297_165830130
transcript_50254.known	chr2	-	1838	8	FSM	ENSMUSG00000035949.16	ENSMUST00000091020.10	1838	8	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_6	107.582336764329	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTTGTTCTTTGAAATT	9196	False	NA	-4	True	ATTAAA	-14	NA	34716247	34695350	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_34696012_34697289_34697460_34698525_34698613_34700994_34701129_34702826_34703022_34712569_34712988_34715973_34716083_34716183
transcript_50255.known	chr2	-	1923	8	FSM	ENSMUSG00000035949.16	ENSMUST00000113080.9	1923	8	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_7	72.0294724259395	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCCTTTGTTCTTTGAAA	9201	False	NA	-6	True	ATTAAA	-12	NA	34716242	34695352	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_34696012_34697289_34697460_34698525_34698613_34700994_34701129_34702826_34703022_34712569_34713080_34715973_34716083_34716183
transcript_50262.known	chr2	-	1930	4	FSM	ENSMUSG00000035949.16	ENSMUST00000131534.8	1930	4	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_3	100.641277151409	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCCAGCTCCAATATGTT	9120	False	NA	NA	False	NA	NA	NA	34716323	34701850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_34703022_34712569_34713080_34715973_34716083_34716183
transcript_50264.nnic	chr2	+	655	3	Antisense	novelGene_ENSMUSG00000035949.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_2	1.5	12	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTAATTGGAGGAGTGTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	34692208	34702251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr2_+_34692482_34701755_34701957_34702070
transcript_50267.known	chr2	-	2030	7	FSM	ENSMUSG00000035949.16	ENSMUST00000028220.10	2030	7	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_4	71.5238887831658	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATCTGAGTCTGCTGGTTG	9358	False	NA	NA	False	NA	NA	NA	34716085	34695189	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_34696012_34697289_34697460_34698525_34698613_34700994_34701129_34702826_34703022_34712569_34713080_34715973
transcript_5027.known	chr1	-	2591	16	FSM	ENSMUSG00000026565.19	ENSMUST00000160908.8	2591	16	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_7	5.03940031705713	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAACAAAAACAGACAGAC	9701	False	NA	22	True	NA	NA	NA	165830191	165703025	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_165703618_165704545_165704635_165707698_165708045_165719378_165719485_165722473_165722654_165724005_165724152_165725193_165725336_165729708_165729883_165734253_165734349_165736448_165736576_165738856_165739046_165740795_165740919_165742678_165742733_165744490_165744592_165759230_165759297_165830130
transcript_50270.nnic	chr2	-	1886	9	NIC	ENSMUSG00000026869.13	novel	4397	10	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	104	junction_8	158.265945089271	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGGCGTTGGTATTCCG	NA	False	NA	-14	True	AATAAA	-14	NA	34760976	34742113	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_34742846_34744263_34744405_34746459_34746570_34747649_34747842_34750643_34750787_34753468_34753579_34755538_34755668_34755993_34756108_34760761
transcript_50272.known	chr2	-	3741	15	FSM	ENSMUSG00000026873.10	ENSMUST00000028232.7	3741	15	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	4.03871569806491	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAAGCGTGTCCTTGGAGC	3687	False	NA	-17	True	ATTAAA	-28	NA	34803988	34783768	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_34786074_34787068_34787165_34788085_34788172_34788935_34789024_34789594_34789757_34791071_34791140_34793147_34793269_34793363_34793433_34794066_34794163_34795461_34795611_34796469_34796571_34797016_34797113_34801175_34801258_34801628_34801815_34803952
transcript_50274.nnic	chr2	-	1550	7	NIC	ENSMUSG00000026875.15	novel	2325	11	NA	NA	-23	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	4.06885187191123	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAACAGC	NA	False	NA	NA	False	NA	NA	NA	34851632	34837547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_34838564_34839050_34839117_34846207_34846293_34847970_34848119_34848524_34848624_34849486_34849526_34851535
transcript_50277.known	chr2	+	2734	11	FSM	ENSMUSG00000057110.16	ENSMUST00000028235.11	2734	11	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_10	5.89576118919347	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCTAAGCCTTGGTATT	NA	False	NA	NA	False	TATAAA	-15	NA	34999503	35020739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_34999642_35001566_35001815_35003335_35003467_35006683_35006815_35008066_35008209_35009948_35010136_35012671_35012866_35015987_35016108_35017316_35017543_35017939_35018050_35019632
transcript_5028.known	chr1	-	254	4	FSM	ENSMUSG00000026565.19	ENSMUST00000176800.2	254	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.816496580927726	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAATCATCTATGGAGAG	9714	False	NA	NA	False	AATGAA	-17	NA	165830178	165759267	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_165759297_165773470_165773572_165780349_165780426_165830130
transcript_50286.known	chr2	-	3081	8	FSM	ENSMUSG00000026878.18	ENSMUST00000028238.15	3081	8	0	0	0	0	multi-exon	FALSE	canonical	3	853	junction_1	102.482054178141	499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGTTGCATTATTTTTGA	9552	False	NA	NA	False	AATAAA	-26	NA	35091132	35070216	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_35072460_35073404_35073436_35073755_35073844_35076685_35076753_35079911_35080090_35081523_35081578_35082632_35082692_35090771
transcript_50294.known	chr2	-	925	7	FSM	ENSMUSG00000026878.18	ENSMUST00000230751.2	925	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	388.931299274763	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGAAAAAAGAAAAAACA	9696	False	NA	NA	False	NA	NA	NA	35090988	35072174	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_35072460_35073404_35073436_35073755_35073844_35076685_35076753_35079911_35080090_35082632_35082692_35090771
transcript_50295.known	chr2	-	494	4	FSM	ENSMUSG00000026878.18	ENSMUST00000155359.3	494	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	516.895218266397	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTCATCAATTTACAGAAAA	9725	False	NA	NA	False	TTTAAA	-33	NA	35090959	35081548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_35081578_35081990_35082209_35082632_35082692_35090771
transcript_50297.known	chr2	-	2787	7	FSM	ENSMUSG00000026880.12	ENSMUST00000028241.7	2787	7	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	5.5876848714134	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTGTGAGTCTTGTTTCT	NA	False	NA	0	True	AATAAA	-20	NA	35226988	35203997	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_35206068_35210342_35210478_35211494_35211699_35213675_35213759_35215325_35215399_35216432_35216537_35226870
transcript_50298.known	chr2	+	555	1	FSM	ENSMUSG00000075391.7	ENSMUST00000120770.2	555	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCGGGAGAATGTGCCTTT	5888	False	NA	NA	False	NA	NA	NA	35230420	35230975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_35230400_35231000
transcript_50300.known	chr2	-	3606	9	FSM	ENSMUSG00000035778.18	ENSMUST00000102794.8	3606	9	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_8	26.0836994117016	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATTCTGGTCTGGTATGG	NA	False	NA	-3	True	AATAAA	-13	NA	35351461	35290194	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_35292815_35297956_35298095_35303337_35303440_35304230_35304297_35306483_35306520_35312191_35312281_35313243_35313425_35322525_35322645_35351206
transcript_50302.known	chr2	-	3391	8	FSM	ENSMUSG00000035778.18	ENSMUST00000113002.9	3391	8	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_7	27.2381784880513	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGGTCTGGTATGGATTA	NA	False	NA	1	True	AATAAA	-17	NA	35351278	35290190	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_35292815_35297956_35298095_35303337_35303440_35304230_35304297_35312191_35312281_35313243_35313425_35322525_35322645_35351206
transcript_50305.nic	chr2	-	690	4	NIC	ENSMUSG00000035778.18	novel	3391	8	NA	NA	1	1313	combination_of_known_junctions	FALSE	canonical	3	25	junction_3	31.2089730686545	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGCCTTAGTAATTATC	1166	False	NA	NA	False	ATTAAA	-21	NA	35335844	35312027	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_35312281_35313243_35313425_35322525_35322645_35335707
transcript_50309.known	chr2	+	4128	17	FSM	ENSMUSG00000026883.18	ENSMUST00000135741.8	4128	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	81.6658349234856	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTGACTTGCCTTTCTT	NA	False	NA	9	True	ATTAAA	-19	NA	35472851	35621004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_35473062_35533899_35534004_35551503_35551638_35597659_35597814_35598825_35598925_35599829_35600385_35602877_35603023_35603117_35603263_35605280_35605518_35607082_35607285_35608771_35608951_35609864_35610754_35611272_35611426_35613040_35613235_35617437_35617526_35618069_35618141_35620435
transcript_5031.known	chr1	-	2139	2	FSM	ENSMUSG00000026565.19	ENSMUST00000176101.2	2139	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTGATTAATATTCTCTTT	9694	False	NA	NA	False	NA	NA	NA	165830198	165757225	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_165759297_165830130
transcript_50312.nnic	chr2	+	1062	4	NNC	ENSMUSG00000026883.18	novel	6392	14	NA	NA	-93	124	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	122.475394354222	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACGCAACAGCTACCTGGG	286	False	NA	NA	False	AAAAAG	-7	NA	35581912	35600069	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_35582482_35597659_35597814_35598825_35598925_35599829
transcript_50313.known	chr2	-	2033	4	FSM	ENSMUSG00000086555.3	ENSMUST00000124555.3	2033	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATCATCTGAGAGTGGCT	9141	False	NA	NA	False	NA	NA	NA	35448714	35439549	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_35440429_35444432_35445205_35448245_35448381_35448467
transcript_50317.known	chr2	+	653	3	FSM	ENSMUSG00000086449.2	ENSMUST00000139455.2	653	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCTATTTCTCAGCCCAC	NA	False	NA	NA	False	AATAAA	-18	NA	35709201	35713397	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_35709300_35712534_35712694_35713001
transcript_5032.known	chr1	-	4018	6	FSM	ENSMUSG00000026564.10	ENSMUST00000085992.4	4018	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	17.4768418199628	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTTCTTCATTCTGGT	NA	False	NA	-6	True	ATTAAA	-14	NA	165955465	165925721	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_165928956_165935541_165935760_165937620_165937853_165939599_165939695_165954638_165954773_165955360
transcript_50323.known	chr2	-	861	4	FSM	ENSMUSG00000026895.8	ENSMUST00000070112.6	861	4	0	0	0	0	multi-exon	FALSE	canonical	3	1222	junction_2	59.9184631163235	10039	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTGTGTTTTATTATGCT	NA	False	NA	-1	True	ATTAAA	-15	NA	35939418	35926337	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_35926654_35929723_35929890_35934361_35934526_35939203
transcript_50325.known	chr2	+	714	5	FSM	ENSMUSG00000026894.5	ENSMUST00000028256.5	714	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTGAGTGAGTGAGTGCTT	NA	False	NA	NA	False	AATAAA	-26	NA	35939469	35969730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_35939588_35942948_35943097_35944972_35945085_35947030_35947163_35969526
transcript_50329.known	chr2	+	2623	7	FSM	ENSMUSG00000026887.10	ENSMUST00000028250.9	2623	7	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_1	20.1941960858945	575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTCCAGGGTCTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	36026400	36080659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_36026712_36031457_36031670_36037914_36038071_36043604_36043724_36049610_36049703_36067126_36067287_36079086
transcript_50334.nnic	chr2	+	1163	6	NIC	ENSMUSG00000026887.10	novel	2623	7	NA	NA	8	-1051	combination_of_known_splicesites	FALSE	canonical	2	5	junction_2	66.6123111744368	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAGAGTGGTTTGGATGGA	NA	False	NA	26	True	AATAAA	-27	NA	36026653	36079608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_36026712_36031457_36031670_36043604_36043724_36049610_36049703_36067126_36067287_36079086
transcript_50336.known	chr2	-	2617	6	FSM	ENSMUSG00000026889.13	ENSMUST00000028251.10	2617	6	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_3	16.6300932047899	925	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGTGGTCTTATTGTCT	NA	False	NA	-23	True	AATAAA	-16	NA	36026785	36006090	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_36007987_36010824_36010911_36012863_36012951_36017136_36017264_36024146_36024276_36026493
transcript_50339.known	chr2	-	781	5	FSM	ENSMUSG00000026889.13	ENSMUST00000122456.8	781	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	119.472538685675	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATAAATAGGAATGTGTCC	NA	False	NA	-40	True	NA	NA	NA	36026623	36007637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_36007987_36010824_36010911_36012863_36012951_36024146_36024276_36026493
transcript_50346.known	chr2	-	567	1	FSM	ENSMUSG00000083716.5	ENSMUST00000120418.2	567	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14992	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGGATCTTAACTGTTAA	NA	False	NA	NA	False	NA	NA	NA	36698404	36697837	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_36697800_36698400
transcript_50348.known	chr2	-	2858	4	FSM	ENSMUSG00000009030.15	ENSMUST00000009174.15	2858	4	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	14.3527000944073	177	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCTGTATATTAGATATTT	NA	False	NA	-7	True	AATAAA	-20	NA	37249344	37240085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_37242395_37245647_37245830_37247215_37247393_37249154
transcript_50350.known	chr2	-	5267	2	FSM	ENSMUSG00000050714.10	ENSMUST00000067043.5	5267	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGGTGTCATTGACTTC	NA	False	NA	2	True	AATAAA	-14	NA	37333133	37322179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_37327012_37332698
transcript_50351.known	chr2	-	2047	2	FSM	ENSMUSG00000050714.10	ENSMUST00000102789.3	2047	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATGATAGAAATATAATAA	NA	False	NA	NA	False	AAAAAG	-27	NA	37333132	37325029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_37327012_37333067
transcript_50353.known	chr2	+	4967	26	FSM	ENSMUSG00000035437.16	ENSMUST00000061179.12	4967	26	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	34.3579743291132	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTGCTTCATACAAAAGTA	1545	False	NA	7	True	ATTAAA	-18	NA	37333296	37456449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_37333469_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921_37382092_37385594_37385770_37392879_37392974_37398939_37399091_37422527_37422642_37427313_37427389_37430428_37430555_37431044_37431189_37432648_37432691_37433114_37433244_37445717_37445811_37446207_37446319_37450486_37450592_37451380_37451465_37451903_37451976_37453447_37453646_37454776
transcript_50354.known	chr2	+	4847	26	FSM	ENSMUSG00000035437.16	ENSMUST00000112920.2	4847	26	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_1	33.7498088883478	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTTTTATGTTTGCATAT	NA	False	NA	24	True	ATTAAA	-35	NA	37342278	37456466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_37342314_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921_37382092_37385594_37385770_37392879_37392974_37398939_37399091_37422527_37422642_37427313_37427389_37430428_37430555_37431044_37431189_37432648_37432691_37433114_37433244_37445717_37445811_37446207_37446319_37450486_37450592_37451380_37451465_37451903_37451976_37453447_37453646_37454776
transcript_50359.known	chr2	+	1594	11	FSM	ENSMUSG00000035437.16	ENSMUST00000133434.8	1594	11	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	48.2323542863087	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGGAGAAAAAGAATAAT	1539	False	NA	NA	False	GATAAA	-3	NA	37333290	37385601	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_37333469_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921_37382092_37385594
transcript_50361.nic	chr2	+	1489	10	ISM	ENSMUSG00000035437.16	ENSMUST00000066055.10	4247	19	-23	52883	-23	-1867	5prime_fragment	FALSE	canonical	3	120	junction_1	49.1884760166394	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTCACCTGGGTGCCGA	NA	False	NA	NA	False	NA	NA	NA	37342233	37382091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_37342314_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921
transcript_50362.known	chr2	+	1746	8	FSM	ENSMUSG00000035437.16	ENSMUST00000153145.8	1746	8	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	85.4457698884897	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAATAAAATAAAAA	1556	False	NA	NA	False	NA	NA	NA	37333307	37378178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_37333469_37359527_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523
transcript_50363.nic	chr2	+	2091	8	ISM	ENSMUSG00000035437.16	ENSMUST00000133434.8	1594	11	0	7234	0	189	5prime_fragment	FALSE	canonical	3	116	junction_1	55.4962767642468	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAGAAAGAAAA	1539	False	NA	NA	False	NA	NA	NA	37333290	37378367	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_37333469_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523
transcript_50364.known	chr2	-	3144	18	FSM	ENSMUSG00000026915.17	ENSMUST00000072186.12	3144	18	0	0	0	0	multi-exon	FALSE	canonical	3	591	junction_8	55.9640270025228	464	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTTGTTCTTGTGGCCT	NA	False	NA	-4	True	AATAAA	-14	NA	37593287	37473167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_37474119_37476521_37476567_37480668_37480793_37486715_37486857_37489132_37489268_37490756_37490916_37492946_37493147_37493933_37494027_37514184_37514297_37514504_37514603_37515189_37515302_37516493_37516590_37517446_37517539_37525435_37525581_37530862_37531029_37535482_37535704_37537127_37537298_37593203
transcript_5037.known	chr1	-	4045	6	FSM	ENSMUSG00000026564.10	ENSMUST00000192369.6	4045	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	17.4768418199628	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTCATTCTGGTCATTT	NA	False	NA	-1	True	ATTAAA	-19	NA	165955491	165925716	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_165928956_165935541_165935760_165937620_165937853_165939599_165939695_165954638_165954769_165955360
transcript_50370.known	chr2	+	1675	2	FSM	ENSMUSG00000085950.2	ENSMUST00000146404.2	1675	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATAAAAATAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	38314013	38345863	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_38314310_38344484
transcript_50373.known	chr2	+	10338	10	FSM	ENSMUSG00000026749.12	ENSMUST00000054234.10	10338	10	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	27.0760246548697	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAAAAAAATCAAA	NA	False	NA	NA	False	NA	NA	NA	38401654	38484618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_38401806_38440564_38440684_38447827_38447969_38448864_38448928_38450892_38451004_38458858_38458968_38459639_38459748_38467250_38467346_38472394_38472509_38475291
transcript_50377.known	chr2	+	3147	10	FSM	ENSMUSG00000026749.12	ENSMUST00000112902.8	3147	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	93.6646236761514	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACAGTCTCCACTGGAC	NA	False	NA	2	True	AATAAA	-13	NA	38401679	38477492	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_38401806_38440564_38440684_38447867_38447969_38448864_38448928_38450892_38451004_38458858_38458968_38459639_38459748_38467250_38467346_38472394_38472509_38475291
transcript_50378.known	chr2	+	1513	10	FSM	ENSMUSG00000026749.12	ENSMUST00000112895.8	1513	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	94.3328752769929	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGGCTGTGTGCTTCATTT	NA	False	NA	-57	True	NA	NA	NA	38401825	38475778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_38401992_38440564_38440684_38447827_38447969_38448864_38448928_38450892_38451004_38458858_38458968_38459639_38459748_38467250_38467346_38472394_38472509_38475291
transcript_5038.nnic	chr1	+	2437	8	NNC	ENSMUSG00000000544.15	novel	2227	8	NA	NA	16	-3	at_least_one_novel_splicesite	FALSE	non_canonical	1	4	junction_7	69.1452183776275	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACTTTTCTTTGTTCACC	NA	False	NA	6	True	AATAAA	-15	NA	165957822	165994075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_165958174_165974207_165974363_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715_165992854_165992911
transcript_5039.known	chr1	+	2227	8	FSM	ENSMUSG00000000544.15	ENSMUST00000166860.2	2227	8	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_7	70.4990953770301	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTTCTTTGTTCACCCAT	NA	False	NA	9	True	AATAAA	-18	NA	165958035	165994078	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_165958174_165974207_165974363_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715_165992866_165992923
transcript_50399.known	chr2	+	579	4	FSM	ENSMUSG00000026755.15	ENSMUST00000141467.8	579	4	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_1	441.536962086855	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTAACACAGAACCAACACT	NA	False	NA	NA	False	NA	NA	NA	38895359	38905338	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_38895422_38903128_38903200_38903734_38903912_38905069
transcript_504.known	SIRV6	+	1088	9	FSM	SIRV6A	SIRV605	1088	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	8239.38325968637	5303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAGAGCAATCAACTCAC	NA	False	NA	NA	False	NA	NA	NA	1130	11331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031
transcript_50401.known	chr2	+	752	4	FSM	ENSMUSG00000026755.15	ENSMUST00000090993.8	752	4	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_1	241.831897537663	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTCTGTTTGAAATGGGG	NA	False	NA	NA	False	NA	NA	NA	38898168	38905405	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_38898337_38903128_38903200_38903734_38903912_38905069
transcript_50411.known	chr2	-	1165	2	FSM	ENSMUSG00000085755.2	ENSMUST00000141133.2	1165	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTTTTTTTTTCGTGTAC	NA	False	NA	NA	False	NA	NA	NA	38888270	38886724	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_38887374_38887754
transcript_50412.known	chr2	-	946	4	FSM	ENSMUSG00000062997.7	ENSMUST00000080861.6	946	4	0	0	0	0	multi-exon	FALSE	canonical	3	27807	junction_3	5721.16085733967	40855	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGCTTCATGTTTTACAT	NA	False	NA	-9	True	AATAAA	-19	NA	38895636	38891591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_38891778_38894118_38894201_38894743_38894881_38895095
transcript_50413.known	chr2	+	1339	4	FSM	ENSMUSG00000026755.15	ENSMUST00000112862.7	1339	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	449.53704580997	2365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGGCTTCAAAAGTCATC	NA	False	NA	8	True	AATAAA	-19	NA	38898087	38905889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_38898357_38903126_38903200_38903734_38903912_38905069
transcript_50414.known	chr2	-	541	3	FSM	ENSMUSG00000062997.7	ENSMUST00000152441.2	541	3	0	0	0	0	multi-exon	FALSE	canonical	3	39700	junction_1	236.5	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAGATGACAACGACAATAA	NA	False	NA	-48	True	NA	NA	NA	38895055	38891630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_38891778_38894118_38894201_38894743
transcript_5042.known	chr1	+	2515	7	FSM	ENSMUSG00000000544.15	ENSMUST00000060833.14	2515	7	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_6	19.1398362932741	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTTGTTCACCCATC	NA	False	NA	10	True	AATAAA	-19	NA	165957806	165994079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_165958174_165974207_165974363_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715
transcript_50423.known	chr2	-	1494	9	FSM	ENSMUSG00000026754.17	ENSMUST00000136261.2	1494	9	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_8	8.4400459121974	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGAGCTCCAGGCGATCA	NA	False	NA	NA	False	NA	NA	NA	38955497	38937083	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_38937779_38938321_38938451_38940170_38940204_38942015_38942114_38942967_38943043_38946071_38946163_38953253_38953517_38954686_38954736_38955436
transcript_50425.known	chr2	-	10709	18	FSM	ENSMUSG00000035236.18	ENSMUST00000038874.12	10709	18	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	3.37403068228235	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTGTATTTCTTTAGT	NA	False	NA	NA	False	AATAAA	-16	NA	39080746	38956225	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_38965169_38970088_38970190_38970385_38970560_38973549_38973623_38984714_38984797_38989387_38989488_38992332_38992412_38993214_38993317_38993675_38993778_38996931_38997085_38997219_38997319_38998318_38998416_39011122_39011222_39013015_39013103_39015101_39015198_39022966_39023099_39080000_39080046_39080601
transcript_50429.known	chr2	-	1233	10	FSM	ENSMUSG00000035236.18	ENSMUST00000157038.8	1233	10	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	3.5624932315292	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	39080742	38993493	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_38993778_38996931_38997085_38997219_38997319_38998318_38998416_39011122_39011222_39013015_39013103_39015101_39015198_39022966_39023099_39080000_39080046_39080601
transcript_50434.known	chr2	-	4115	7	FSM	ENSMUSG00000026753.6	ENSMUST00000028087.6	4115	7	0	0	0	0	multi-exon	FALSE	canonical	3	417	junction_2	25.493463214453	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATCTCATGCAGTATAC	NA	False	NA	NA	False	AATAAA	-29	NA	39116463	39084365	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_39087602_39089674_39089885_39090053_39090134_39094844_39094987_39096663_39096730_39100969_39101066_39116178
transcript_50435.known	chr2	-	1495	6	FSM	ENSMUSG00000026753.6	ENSMUST00000204701.3	1495	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	180.985524283021	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTTTAGTTAAAAACTGC	NA	False	NA	5	True	AATAAA	-36	NA	39116332	39086788	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_39087602_39089674_39089885_39090053_39090134_39094844_39094987_39100969_39101066_39116178
transcript_50439.known	chr2	-	662	2	FSM	ENSMUSG00000081999.4	ENSMUST00000120980.2	662	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGTGAAGCTGGAGCCCT	NA	False	NA	NA	False	NA	NA	NA	41878841	41877484	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_41878030_41878724
transcript_50448.nic	chr2	+	2116	3	NIC	ENSMUSG00000086202.2	novel	635	4	NA	NA	-55	1231	intron_retention	FALSE	canonical	3	17	junction_1	10	217	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCCACATAAACAAAAATTCA	NA	False	NA	NA	False	NA	NA	NA	45586561	45589690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_45586642_45586810_45587155_45587998
transcript_5045.nic	chr1	+	2195	6	NIC	ENSMUSG00000000544.15	novel	2515	7	NA	NA	-14	0	intron_retention	FALSE	canonical	3	10	junction_1	77.1974092829546	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTTGTTCACCCATC	NA	False	NA	10	True	AATAAA	-19	NA	165957971	165994079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_165958174_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715
transcript_50454.known	chr2	+	621	5	FSM	ENSMUSG00000036792.13	ENSMUST00000154653.8	621	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.9180788932265	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAATTAACTACCCACAT	6221	False	NA	NA	False	AAAAAG	-10	NA	48839529	49009024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_48839562_48908265_48908338_48976601_48976665_48989728_48989822_49008663
transcript_5046.nnic	chr1	+	2358	6	NNC	ENSMUSG00000000544.15	novel	2515	7	NA	NA	21631	0	intron_retention	FALSE	canonical	2	8	junction_1	77.9717897704035	61	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTTGTTCACCCATC	NA	False	NA	10	True	AATAAA	-19	NA	165979666	165994079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_165980032_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715
transcript_50465.known	chr2	-	1477	14	FSM	ENSMUSG00000026761.13	ENSMUST00000154784.8	1477	14	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_4	114.388107132055	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTGCACTTAGTATGTT	NA	False	NA	NA	False	TATAAA	-12	NA	48839243	48795327	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800255_48802573_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
transcript_50479.known	chr2	-	4066	14	FSM	ENSMUSG00000026761.13	ENSMUST00000028098.11	4066	14	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_6	44.7134201423734	782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGATGAAGCATTTTTT	NA	False	NA	NA	False	AGTAAA	-18	NA	48839288	48792835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800307_48802573_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
transcript_5049.nnic	chr1	+	1939	5	NNC	ENSMUSG00000000544.15	novel	2515	7	NA	NA	24510	0	intron_retention	FALSE	canonical	3	12	junction_1	75.0083328704218	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTTGTTCACCCATC	NA	False	NA	10	True	AATAAA	-19	NA	165982545	165994079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_165982709_165985081_165985238_165991341_165991462_165992148_165992285_165992715
transcript_50508.known	chr2	-	2133	10	FSM	ENSMUSG00000026761.13	ENSMUST00000141441.8	2133	10	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_2	49.1515670473473	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTTTTTTTTACTGCAG	NA	False	NA	NA	False	AATAAA	-15	NA	48839246	48801415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
transcript_5051.known	chr1	+	787	4	FSM	ENSMUSG00000000544.15	ENSMUST00000027847.7	787	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	86.0736119067085	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGTTTTCTTTCTCGGTG	NA	False	NA	NA	False	AATAAA	-20	NA	165957985	165981705	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_165958174_165974207_165974363_165980136_165980354_165981478
transcript_50516.known	chr2	-	1153	7	FSM	ENSMUSG00000026761.13	ENSMUST00000090976.10	1153	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	170.808290847436	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGACAGACTTTGGGTT	NA	False	NA	NA	False	NA	NA	NA	48839246	48821969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_48822610_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
transcript_50522.known	chr2	-	647	4	FSM	ENSMUSG00000026761.13	ENSMUST00000123809.2	647	4	0	0	0	0	multi-exon	FALSE	canonical	3	457	junction_3	31.4572019664107	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGTCCCAACTCAGGACTT	NA	False	NA	NA	False	NA	NA	NA	48839244	48826488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_48826875_48827463_48827541_48830344_48830413_48839128
transcript_50523.known	chr2	-	383	4	FSM	ENSMUSG00000026761.13	ENSMUST00000149679.8	383	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	233.3699971195	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTAAAAGACTTAAGTTTCT	NA	False	NA	NA	False	NA	NA	NA	48839253	48826784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_48826875_48827463_48827541_48830344_48830413_48839105
transcript_50524.known	chr2	+	4697	14	FSM	ENSMUSG00000069495.13	ENSMUST00000092123.11	4697	14	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	7.11943751517944	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTGATATATGTGTGTG	NA	False	NA	14	True	AGTAAA	-19	NA	49341497	49441960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_49341971_49378700_49378861_49403226_49403373_49412482_49412690_49418859_49419009_49420022_49420156_49422055_49422248_49425266_49425357_49426587_49426737_49426836_49427181_49435720_49435858_49437457_49437618_49438442_49438777_49439937
transcript_50529.nic	chr2	+	484	3	ISM	ENSMUSG00000026764.16	ENSMUST00000146247.2	729	7	-232	19456	-232	-19456	5prime_fragment	FALSE	canonical	3	34	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAAAGAGAAGAACAAGGC	NA	False	NA	NA	False	NA	NA	NA	49590358	49600807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_49590618_49590968_49591118_49600731
transcript_50530.nic	chr2	+	723	3	ISM	ENSMUSG00000026764.16	ENSMUST00000146247.2	729	7	-232	19217	-232	-19217	5prime_fragment	FALSE	canonical	3	34	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGCCCCAGCTCATTCCA	NA	False	NA	NA	False	ACTAAA	-20	NA	49590358	49601046	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_49590618_49590968_49591118_49600731
transcript_50531.known	chr2	+	6856	26	FSM	ENSMUSG00000026764.16	ENSMUST00000028102.14	6856	26	0	0	0	0	multi-exon	TRUE	canonical	3	10	junction_25	6.95056832208705	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTCTGGTGTCCTTATTT	NA	False	NA	17	True	AATAAA	-18	NA	49509309	49664790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_49509800_49561763_49561855_49570176_49570251_49578664_49578770_49583705_49583755_49584011_49584068_49584779_49584868_49587991_49588117_49590512_49590618_49590968_49591118_49600731_49600881_49612988_49613162_49617902_49617972_49620128_49620336_49622715_49622863_49625444_49625634_49629094_49629213_49631344_49631422_49631950_49632061_49634376_49634479_49634697_49634759_49639310_49639383_49642260_49642366_49647350_49647568_49648821_49648935_49661175
transcript_50532.known	chr2	+	563	5	FSM	ENSMUSG00000050447.16	ENSMUST00000128451.8	563	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	1.73205080756888	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAATATCTGTAATCTACC	NA	False	NA	NA	False	NA	NA	NA	49956473	50080682	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_49956597_50055480_50055670_50063612_50063712_50078722_50078854_50080661
transcript_50539.known	chr2	-	803	8	FSM	ENSMUSG00000026766.17	ENSMUST00000134480.8	803	8	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_6	199.415574689068	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTTAGGATTCTCAGTTG	NA	False	NA	NA	False	NA	NA	NA	50186699	50170361	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182926_50186263_50186322_50186654
transcript_50540.known	chr2	-	1342	8	FSM	ENSMUSG00000026766.17	ENSMUST00000102769.11	1342	8	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_7	76.2190720146573	2159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGTTTTTTATTGCA	NA	False	NA	0	True	AATAAA	-20	NA	50186729	50169892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182966_50186263_50186322_50186654
transcript_50541.known	chr2	-	1351	9	FSM	ENSMUSG00000026766.17	ENSMUST00000147345.8	1351	9	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	284.132011572086	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGTTTTTTATTGCA	NA	False	NA	0	True	AATAAA	-20	NA	50186707	50169892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_50170415_50170584_50170671_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182911_50186263_50186322_50186654
transcript_50542.known	chr2	-	2828	5	FSM	ENSMUSG00000017144.9	ENSMUST00000017288.9	2828	5	0	0	0	0	multi-exon	FALSE	canonical	3	429	junction_2	50.2792203599061	1403	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCTGGGATGTTTTCTGC	NA	False	NA	-9	True	AATAAA	-16	NA	51039123	51020449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_51022558_51024094_51024230_51027147_51027258_51038235_51038324_51038736
transcript_5055.known	chr1	-	1546	12	FSM	ENSMUSG00000040629.9	ENSMUST00000038782.4	1546	12	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_10	4.55453638177285	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGGCACTCTTGCTTGTT	NA	False	NA	-7	True	ATTAAA	-22	NA	166066313	166028953	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_166029305_166029843_166029920_166032358_166032492_166033421_166033485_166053158_166053301_166053405_166053461_166054134_166054260_166061733_166061776_166062969_166063126_166064441_166064542_166065831_166065925_166066103
transcript_50551.nnic	chr2	-	1259	4	NNC	ENSMUSG00000086523.2	novel	603	3	NA	NA	-82303	538	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	2.16024689946929	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCAAAATCTTTGTGTAC	NA	False	NA	NA	False	AATAAA	-27	NA	51337814	51253045	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_51253903_51266332_51266409_51306587_51306703_51337603
transcript_50553.nnic	chr2	-	734	4	NNC	ENSMUSG00000086523.2	novel	603	3	NA	NA	-82303	13	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	2.16024689946929	30	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTAGTTTCCGGCTCTCAC	NA	False	NA	NA	False	TATAAA	-21	NA	51337814	51253570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_51253903_51266332_51266409_51306587_51306703_51337603
transcript_50557.nnic	chr2	-	631	4	NNC	ENSMUSG00000086523.2	novel	603	3	NA	NA	-82303	-90	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	2.16024689946929	17	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAAAATAGTTGTCCTCCT	NA	False	NA	NA	False	TATAAA	-20	NA	51337814	51253673	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_51253903_51266332_51266409_51306587_51306703_51337603
transcript_50567.nnic	chr2	-	463	3	Intergenic	novelGene_74	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_2	2.5	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCAAGCTGCTGTCCTCA	NA	False	NA	NA	False	NA	NA	NA	51337766	51266223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr2_-_51266409_51306587_51306703_51337603
transcript_50569.nnic	chr2	-	554	3	NNC	ENSMUSG00000086007.2	novel	506	3	NA	NA	-8924	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.5	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTTCTATTTACATGGCA	NA	False	NA	NA	False	ATTAAA	-13	NA	51337721	51311059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_51311254_51331538_51331781_51337603
transcript_50571.known	chr2	-	2106	5	FSM	ENSMUSG00000036249.17	ENSMUST00000102768.8	2106	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	13.0455931256497	430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGAGCTGCATCATTATT	NA	False	NA	NA	False	ATTAAA	-1	NA	51825175	51814459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_51815947_51816692_51816773_51819671_51819862_51822411_51822532_51824946
transcript_50572.known	chr2	-	584	5	FSM	ENSMUSG00000036249.17	ENSMUST00000132703.2	584	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	13.0455931256497	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTAGTAGTGGACCTGAA	NA	False	NA	NA	False	NA	NA	NA	51824686	51815883	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_51815947_51816692_51816773_51819671_51819862_51822411_51822536_51824559
transcript_50573.known	chr2	-	2057	5	FSM	ENSMUSG00000036249.17	ENSMUST00000102767.8	2057	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	2.77263412660235	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGAGCTGCATCATTATT	NA	False	NA	NA	False	ATTAAA	-1	NA	51825019	51814459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_51815947_51816692_51816773_51819671_51819862_51822411_51822536_51824843
transcript_50577.known	chr2	-	1162	9	FSM	ENSMUSG00000026946.10	ENSMUST00000145481.8	1162	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	2.57087047515039	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTGTCTTCTTACTCTTT	8642	False	NA	NA	False	CATAAA	-17	NA	51863016	51838512	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_51838789_51839995_51840103_51842453_51842641_51842787_51842895_51845937_51846101_51848908_51849005_51850582_51850673_51862599_51862640_51862920
transcript_50579.known	chr2	-	1130	8	FSM	ENSMUSG00000026946.10	ENSMUST00000112705.9	1130	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	2.91372543633873	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTCAGTGTCTTCTTACT	8630	False	NA	NA	False	CATAAA	-13	NA	51863028	51838516	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_51838789_51839995_51840103_51842453_51842641_51842787_51842895_51845937_51846101_51848908_51849005_51850582_51850673_51862920
transcript_5058.known	chr1	+	2215	8	FSM	ENSMUSG00000026563.14	ENSMUST00000027846.8	2215	8	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_4	12.2357789173508	299	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTTTCCTGTTTATTCAA	NA	False	NA	15	True	AATAAA	-15	NA	166206665	166221190	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_166207046_166209695_166209788_166209965_166210032_166214234_166214333_166216130_166216341_166217404_166217557_166219391_166219555_166220136
transcript_50580.known	chr2	-	1291	8	FSM	ENSMUSG00000026946.10	ENSMUST00000028314.9	1291	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	2.91372543633873	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTTGATGCAAAATCTAT	8422	False	NA	NA	False	CATAAA	-31	NA	51863236	51838498	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_51838789_51839995_51840103_51842453_51842641_51842787_51842895_51845937_51846101_51848908_51849005_51850582_51850673_51862985
transcript_50582.known	chr2	+	1710	6	FSM	ENSMUSG00000053475.6	ENSMUST00000065927.6	1710	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	0.632455532033676	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTAGTTCTTTAATT	NA	False	NA	NA	False	AATAAA	-17	NA	51928020	51946698	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_51928282_51933740_51933879_51937442_51937605_51940854_51941084_51942315_51942357_51945819
transcript_50585.nnic	chr2	+	3104	26	NNC	ENSMUSG00000036202.17	novel	8509	36	NA	NA	-22	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_16	121.215748151798	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAAAAAAAAGTGAAA	NA	False	NA	46	True	AAAAAG	-27	NA	51962821	51997737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_51962879_51963148_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968342_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983602_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649
transcript_5059.known	chr1	-	762	1	FSM	ENSMUSG00000086925.2	ENSMUST00000145247.2	762	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGTATGCTGAATTTTC	NA	False	NA	NA	False	AAAAAG	-33	NA	166773927	166773165	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_166773200_166773900
transcript_50594.nnic	chr2	+	763	7	NNC	ENSMUSG00000036202.17	novel	8509	36	NA	NA	-22	1515	at_least_one_novel_splicesite	TRUE	canonical	3	241	junction_1	123.429804612446	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAAGTGTTTCTTTTCTTTT	NA	False	NA	NA	False	AAGAAA	-33	NA	51962821	51968532	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_51962879_51963148_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968342
transcript_50595.known	chr2	+	8509	36	FSM	ENSMUSG00000036202.17	ENSMUST00000112693.10	8509	36	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	157.508991644857	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTAGTTAGTGCCTGCCTT	NA	False	NA	24	True	ATTAAA	-19	NA	51962843	52012395	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_51962879_51963148_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968321_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983602_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649_51997770_51998451_51998604_51999203_51999288_51999362_51999415_51999922_52003013_52006259_52006407_52006679_52006758_52006846_52006963_52009028_52009183_52010271_52010381_52011003
transcript_50597.nnic	chr2	-	542	4	NNC	ENSMUSG00000026950.19	novel	1825	18	NA	NA	-40	-36765	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.942809041582063	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTTTAACACTGCTCCT	8995	False	NA	NA	False	NA	NA	NA	52268526	52255610	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_52255752_52257415_52257535_52257948_52258105_52268400
transcript_5060.nnic	chr1	-	1304	7	NNC	ENSMUSG00000026558.14	novel	4731	7	NA	NA	5118	148	at_least_one_novel_splicesite	FALSE	canonical	1	18	junction_6	371.06487153716	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATCTATTTTTGTGTAACT	NA	False	NA	-24	True	TATAAA	-33	NA	167107052	167053647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_167054091_167055300_167055350_167057461_167057560_167062260_167062404_167064171_167064269_167065057_167065218_167106738
transcript_50601.nnic	chr2	+	514	3	NNC	ENSMUSG00000086447.3	novel	157	3	NA	NA	-6188	-1106	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGTTATATT	NA	False	NA	NA	False	NA	NA	NA	52268571	52275456	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_52268741_52274593_52274764_52275281
transcript_50604.known	chr2	-	5239	6	FSM	ENSMUSG00000036093.8	ENSMUST00000036541.8	5239	6	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_4	32.5059994462561	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTTGGGGGTTTTTG	4755	False	NA	-3	True	AATAAA	-22	NA	52314913	52287962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_52292445_52294917_52295070_52302073_52302158_52306075_52306224_52306647_52306709_52314601
transcript_50605.known	chr2	+	766	3	FSM	ENSMUSG00000085315.8	ENSMUST00000143821.2	766	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACGTTCTGCTTAGAAT	1187	False	NA	NA	False	AATAAA	-13	NA	52315023	52324897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_52315168_52320735_52320959_52324498
transcript_50606.known	chr2	-	4717	14	FSM	ENSMUSG00000055371.18	ENSMUST00000102759.8	4717	14	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_4	18.080359738789	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTTGAATTTGAGAGATG	NA	False	NA	NA	False	TATAAA	-12	NA	52632212	52581675	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_52584950_52590016_52590184_52593113_52593265_52596410_52596466_52597929_52598018_52598154_52598238_52599607_52599703_52604829_52605017_52605699_52605770_52606436_52606584_52609708_52609808_52609913_52609990_52610895_52610981_52632072
transcript_50609.known	chr2	-	3565	26	FSM	ENSMUSG00000061136.17	ENSMUST00000239398.2	3565	26	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_25	70.0256410181299	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTGAGTAATAGTTGAAA	NA	False	NA	NA	False	AATATA	-37	NA	53081199	53028486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_53029283_53030472_53030605_53031630_53031693_53031778_53031876_53031954_53032042_53034795_53034892_53035244_53035383_53035631_53035749_53035835_53035928_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081034
transcript_5061.nnic	chr1	-	1408	7	NNC	ENSMUSG00000026558.14	novel	4731	7	NA	NA	346	148	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_6	363.244025721308	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATCTATTTTTGTGTAACT	NA	False	NA	-24	True	TATAAA	-33	NA	167111824	167053647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_167054091_167055300_167055350_167057461_167057560_167062260_167062404_167064171_167064269_167065057_167065218_167111406
transcript_50610.known	chr2	-	3251	26	FSM	ENSMUSG00000061136.17	ENSMUST00000209364.3	3251	26	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_25	95.4321874421833	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTATACCAAATATATGTTT	NA	False	NA	-39	True	NA	NA	NA	53081714	53029189	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_53029283_53030472_53030605_53031630_53031693_53031778_53031876_53031954_53032042_53034795_53034892_53035244_53035383_53035631_53035749_53035835_53035928_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081160
transcript_50620.nnic	chr2	-	2859	26	NNC	ENSMUSG00000061136.17	novel	3251	26	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	3	206	junction_9	120.929824278381	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAATATATGTTTATAGTA	NA	False	NA	-33	True	AATAAA	-6	NA	53081304	53029183	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_53029283_53030472_53030605_53031630_53031693_53031778_53031876_53031954_53032042_53034795_53034892_53035244_53035383_53035631_53035749_53035835_53035940_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081160
transcript_50635.nic	chr2	-	1471	13	ISM	ENSMUSG00000061136.17	ENSMUST00000239398.2	3565	26	-124	14575	-27	0	5prime_fragment	FALSE	canonical	3	422	junction_12	58.5355423842833	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGCAAGATCAAAATA	NA	False	NA	9	True	TATAAA	-25	NA	53081323	53043061	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081034
transcript_50638.nic	chr2	-	1215	11	ISM	ENSMUSG00000061136.17	ENSMUST00000239398.2	3565	26	-68	15551	-5	0	5prime_fragment	FALSE	canonical	3	422	junction_10	57.2751254909145	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATATACTTGGAATACAAAG	NA	False	NA	NA	False	AAAAAG	-31	NA	53081267	53044037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081034
transcript_5064.known	chr1	-	4731	7	FSM	ENSMUSG00000026558.14	ENSMUST00000053686.9	4731	7	0	0	0	0	multi-exon	FALSE	canonical	3	994	junction_5	17.625738755203	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTTTGTGGGTGCCTGGT	NA	False	NA	0	True	AATAAA	-32	NA	167112889	167050451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_167054091_167055300_167055350_167057461_167057560_167062260_167062404_167064171_167064269_167065057_167065218_167112344
transcript_50646.known	chr2	+	2548	4	FSM	ENSMUSG00000026960.7	ENSMUST00000028336.7	2548	4	0	0	0	0	multi-exon	FALSE	canonical	3	497	junction_2	8.2192186706253	899	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTGTGTAATGGCAAGG	NA	False	NA	24	True	ATTAAA	-17	NA	53082099	53109232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_53082535_53084295_53084350_53092930_53093064_53107306
transcript_5065.known	chr1	+	1122	7	FSM	ENSMUSG00000052428.11	ENSMUST00000193446.6	1122	7	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	167.36951800001	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTGTCTCCTGTTCAAA	NA	False	NA	15	True	AATAAA	-22	NA	167136238	167158354	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_167136344_167136874_167136953_167141675_167141736_167143811_167143859_167146830_167146899_167153444_167153590_167157735
transcript_50651.known	chr2	+	582	4	FSM	ENSMUSG00000026960.7	ENSMUST00000155517.2	582	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	228.30583776057	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATAAGATGTTTACTTCAT	NA	False	NA	NA	False	NA	NA	NA	53081737	53107546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_53081893_53084295_53084350_53092930_53093064_53107306
transcript_50659.known	chr2	-	684	1	FSM	ENSMUSG00000083287.5	ENSMUST00000121574.2	684	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTGTAAATGATTTGAAAA	NA	False	NA	NA	False	AATACA	-11	NA	53586816	53586132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_53586100_53586800
transcript_50660.known	chr2	-	1460	1	FSM	ENSMUSG00000075334.3	ENSMUST00000100089.3	1460	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGGTAGTCATTCTGTT	NA	False	NA	NA	False	AATAAA	-29	NA	53975564	53974104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_53974100_53975600
transcript_50661.known	chr2	+	5745	17	FSM	ENSMUSG00000026827.13	ENSMUST00000169687.8	5745	17	0	0	0	0	multi-exon	TRUE	canonical	3	41	junction_1	44.6148447828747	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATTTGTTGGCATTTTGA	NA	False	NA	NA	False	AATAAA	-15	NA	57127689	57260731	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_57128001_57157984_57158095_57179856_57180029_57194372_57194498_57195819_57195918_57196943_57197108_57228858_57229024_57230075_57230221_57235242_57235437_57245471_57245607_57245771_57245948_57246530_57246663_57247666_57247826_57254042_57254156_57254261_57254341_57254516_57254616_57257363
transcript_50663.known	chr2	+	5620	17	FSM	ENSMUSG00000026827.13	ENSMUST00000028167.3	5620	17	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_2	27.9815089612766	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATTTGTTGGCATTTTGA	NA	False	NA	NA	False	AATAAA	-15	NA	57128393	57260731	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_57128580_57157984_57158095_57179856_57180029_57194372_57194498_57195819_57195918_57196943_57197108_57228858_57229024_57230075_57230221_57235242_57235437_57245471_57245607_57245771_57245948_57246530_57246663_57247666_57247826_57254042_57254156_57254261_57254341_57254516_57254616_57257363
transcript_50668.nnic	chr2	-	1008	2	NNC	ENSMUSG00000054181.12	novel	1541	2	NA	NA	-186	-11	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0	23	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTAATCCCAGCTGCTTG	NA	False	NA	NA	False	AATAAA	-14	NA	57128706	57126249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_57126985_57128433
transcript_50670.known	chr2	-	3050	12	FSM	ENSMUSG00000026836.16	ENSMUST00000112601.9	3050	12	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_10	14.1281034036818	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGATGATTTTCCTTCTT	NA	False	NA	-5	True	AATAAA	-14	NA	58456840	58336452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_58337686_58338325_58338457_58348896_58349095_58352892_58353169_58358525_58358673_58364184_58364285_58367616_58367829_58369676_58369941_58390495_58390570_58406035_58406313_58427789_58427886_58456798
transcript_50676.known	chr2	-	463	3	FSM	ENSMUSG00000087455.8	ENSMUST00000155111.2	463	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTATTAGTAGCGACAGG	NA	False	NA	NA	False	NA	NA	NA	59217815	59214136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_59214299_59215031_59215155_59217637
transcript_50678.nnic	chr2	+	1154	2	Antisense	novelGene_ENSMUSG00000087455.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGTCTCACCGTATAATT	NA	False	NA	NA	False	AATAAA	-24	NA	59213384	59216956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr2_+_59214188_59216605
transcript_5068.known	chr1	+	1573	7	FSM	ENSMUSG00000052428.11	ENSMUST00000195015.6	1573	7	0	0	0	0	multi-exon	FALSE	canonical	3	491	junction_3	23.6108496717552	1386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTGTCTCCTGTTCAAA	NA	False	NA	15	True	AATAAA	-22	NA	167135946	167158354	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_167136503_167136874_167136953_167141675_167141736_167143811_167143859_167146830_167146899_167153444_167153590_167157735
transcript_50681.known	chr2	+	573	4	FSM	ENSMUSG00000026989.6	ENSMUST00000028369.6	573	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATACCTGTGCTCCTTTT	168	False	NA	NA	False	AATAAA	-23	NA	59314996	59335364	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_59315111_59324808_59324897_59326901_59326963_59335054
transcript_50682.known	chr2	+	2809	2	FSM	ENSMUSG00000035168.17	ENSMUST00000142573.3	2809	2	0	0	0	0	multi-exon	TRUE	canonical	3	131	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAGAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	ATTAAA	-40	NA	59442418	59479799	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_59442541_59477112
transcript_50683.nic	chr2	-	2076	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-16	0	combination_of_known_junctions	TRUE	canonical	3	4	junction_10	23.1810267244572	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGCCTAAGTGTGTT	NA	False	NA	0	True	AATAAA	-20	NA	59712951	59682707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_59683306_59688953_59689095_59691904_59692082_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708876_59712744
transcript_50684.known	chr2	-	2072	11	FSM	ENSMUSG00000026988.16	ENSMUST00000028368.14	2072	11	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_10	21.0228447171167	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGCCTAAGTGTGTT	NA	False	NA	0	True	AATAAA	-20	NA	59712928	59682707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_59683306_59688953_59689095_59691904_59692082_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708895_59712744
transcript_50685.nic	chr2	-	2017	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_3	17.6150503831241	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGCCTAAGTGTGTT	NA	False	NA	0	True	AATAAA	-20	NA	59712950	59682707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_59683306_59688953_59689095_59691904_59692082_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708895_59712821
transcript_50686.nic	chr2	-	2132	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_10	22.0773639730834	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGCCTAAGTGTGTT	NA	False	NA	0	True	AATAAA	-20	NA	59712951	59682707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_59683306_59688953_59689095_59691904_59692082_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708932_59712744
transcript_50687.nnic	chr2	-	2055	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-16	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_10	20.6164982477626	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGCCTAAGTGTGTT	NA	False	NA	0	True	AATAAA	-20	NA	59712951	59682707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_59683306_59688953_59689095_59691904_59692082_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708932_59712821
transcript_50688.nic	chr2	-	2079	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	4	junction_10	21.0570653225942	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGCCTAAGTGTGTT	NA	False	NA	0	True	AATAAA	-20	NA	59712951	59682707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_59683306_59688953_59689095_59691904_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708876_59712744
transcript_50689.nic	chr2	-	2097	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_10	18.5580171354593	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGCCTAAGTGTGTT	NA	False	NA	0	True	AATAAA	-20	NA	59712950	59682707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_59683306_59688953_59689095_59691904_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708895_59712744
transcript_50690.nic	chr2	-	2020	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_10	14.3488675511345	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGCCTAAGTGTGTT	NA	False	NA	0	True	AATAAA	-20	NA	59712950	59682707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_59683306_59688953_59689095_59691904_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708895_59712821
transcript_50691.nic	chr2	-	2135	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_10	19.790149064623	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGCCTAAGTGTGTT	NA	False	NA	0	True	AATAAA	-20	NA	59712951	59682707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_59683306_59688953_59689095_59691904_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708932_59712744
transcript_50692.nnic	chr2	-	2058	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-16	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_10	18.0765040867973	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGCCTAAGTGTGTT	NA	False	NA	0	True	AATAAA	-20	NA	59712951	59682707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_59683306_59688953_59689095_59691904_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708932_59712821
transcript_50699.nic	chr2	-	1963	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-15	-134	combination_of_known_junctions	FALSE	canonical	3	14	junction_10	18.5580171354593	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGTCAATTATCTT	NA	False	NA	NA	False	NA	NA	NA	59712950	59682841	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_59683306_59688953_59689095_59691904_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708895_59712744
transcript_50700.nic	chr2	-	1886	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-15	-134	combination_of_known_junctions	FALSE	canonical	3	33	junction_10	14.3488675511345	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGTCAATTATCTT	NA	False	NA	NA	False	NA	NA	NA	59712950	59682841	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_59683306_59688953_59689095_59691904_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708895_59712821
transcript_5071.known	chr1	+	2835	11	FSM	ENSMUSG00000026687.15	ENSMUST00000028004.11	2835	11	0	0	0	0	multi-exon	FALSE	canonical	3	593	junction_2	45.3586816386896	815	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTTTGCCGTCTTAATT	NA	False	NA	6	True	ATTAAA	-18	NA	167177559	167196101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240_167183376_167184098_167184296_167184878_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167193343_167193457_167194973
transcript_50727.nnic	chr2	-	1476	8	NNC	ENSMUSG00000026987.17	novel	7895	35	NA	NA	39344	10016	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_4	38.7940664514141	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTTTGACCAGTGAATTG	1514	False	NA	NA	False	AATAAA	-20	NA	59881070	59799002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_59799367_59799561_59799763_59807702_59807897_59808886_59809052_59814125_59814315_59831849_59831901_59836386_59836534_59880905
transcript_50729.nnic	chr2	-	1287	7	NNC	ENSMUSG00000026987.17	novel	7895	35	NA	NA	39344	10016	at_least_one_novel_splicesite	FALSE	canonical	3	63	junction_4	34.7407061912487	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTTTGACCAGTGAATTG	1514	False	NA	NA	False	AATAAA	-20	NA	59881070	59799002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_59799367_59799561_59799763_59807702_59807897_59808886_59809052_59831849_59831901_59836386_59836534_59880905
transcript_5073.known	chr1	-	1097	6	FSM	ENSMUSG00000026688.6	ENSMUST00000028005.3	1097	6	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_1	22.7912263820971	1809	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTCTTTCTTAAGCAATAG	4956	False	NA	NA	False	AATAAA	-16	NA	167221410	167199534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_167200212_167201361_167201435_167203020_167203079_167204829_167204904_167205860_167205985_167221319
transcript_50731.known	chr2	-	1813	3	FSM	ENSMUSG00000026987.17	ENSMUST00000153711.2	1813	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	1.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAAAAAAAACCTCCAA	NA	False	NA	NA	False	ACTAAA	-3	NA	59955936	59834892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_59836534_59907213_59907256_59955806
transcript_50732.known	chr2	-	693	3	FSM	ENSMUSG00000026987.17	ENSMUST00000151756.2	693	3	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_1	9.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCATCTCTTATTATTGAC	9150	False	NA	NA	False	ATTAAA	-18	NA	60040145	60036469	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_60036905_60037138_60037308_60040056
transcript_50733.nnic	chr2	-	566	3	NNC	ENSMUSG00000026987.17	novel	406	2	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_2	1	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTTTAATTGACTTCTGC	9120	False	NA	NA	False	AATAAA	-17	NA	60040175	60036936	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_60037308_60038462_60038539_60040056
transcript_50734.known	chr2	-	406	2	FSM	ENSMUSG00000026987.17	ENSMUST00000134908.2	406	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCTTTAATTGACTTCTG	9203	False	NA	NA	False	AATAAA	-16	NA	60040092	60036937	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_60037308_60040056
transcript_50735.known	chr2	-	7895	35	FSM	ENSMUSG00000026987.17	ENSMUST00000112550.8	7895	35	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_34	50.4484474265647	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCTTTTTTTTTTAGGGG	NA	False	NA	-4	True	AATAAA	-19	NA	59956041	59729706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_59731147_59731818_59731963_59732069_59732336_59733502_59733650_59737259_59737396_59737782_59738094_59742025_59742187_59742745_59742902_59743072_59743350_59743883_59744540_59747697_59747843_59748782_59748846_59750638_59750883_59752486_59752562_59753884_59754100_59755004_59755260_59756363_59756505_59762448_59762515_59764014_59764060_59765558_59765625_59767029_59767096_59773105_59773168_59773281_59773375_59778430_59778642_59787973_59788083_59788775_59788837_59790164_59790450_59792364_59792975_59798970_59799367_59799561_59799763_59807702_59807897_59808886_59809052_59831849_59831901_59836386_59836534_59955806
transcript_50742.known	chr2	+	2271	11	FSM	ENSMUSG00000026977.18	ENSMUST00000102747.8	2271	11	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	141.271405457722	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGATCTGTGAACATGTT	NA	False	NA	NA	False	AAGAAA	-11	NA	60040416	60078317	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_60040429_60055113_60055215_60059261_60059427_60060027_60060224_60062543_60062712_60064242_60065342_60067097_60067271_60071286_60071397_60073900_60074015_60075555_60075605_60078233
transcript_50745.known	chr2	+	3594	10	FSM	ENSMUSG00000026977.18	ENSMUST00000102748.11	3594	10	0	0	0	0	multi-exon	FALSE	canonical	3	327	junction_5	27.2519112479596	542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAACTTTTTCCTTTTA	NA	False	NA	27	True	AATAAA	-24	NA	60040230	60079555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_60040429_60059261_60059427_60060027_60060224_60062543_60062712_60064242_60065342_60067097_60067271_60071286_60071397_60073900_60074015_60075555_60075605_60078233
transcript_50758.known	chr2	-	1354	6	FSM	ENSMUSG00000060703.13	ENSMUST00000074606.11	1354	6	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_2	6.41872261435249	523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCACTGCCTGGTCTTCTT	3932	False	NA	-4	True	AATAAA	-15	NA	60114832	60082336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_60082836_60085414_60085442_60087376_60087548_60088226_60088344_60102445_60102557_60114403
transcript_50761.known	chr2	-	1257	5	FSM	ENSMUSG00000060703.13	ENSMUST00000028356.9	1257	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	33.0189339621981	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCACTGCCTGGTCTTCTT	4002	False	NA	-4	True	AATAAA	-15	NA	60114762	60082336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_60082836_60087376_60087548_60088226_60088344_60102445_60102557_60114403
transcript_50764.known	chr2	-	631	1	FSM	ENSMUSG00000080198.3	ENSMUST00000116410.3	631	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	296	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGCTCCAATAAACCTCAG	7875	False	NA	NA	False	NA	NA	NA	60105918	60105287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_60105300_60105900
transcript_50765.known	chr2	-	5172	35	FSM	ENSMUSG00000026980.16	ENSMUST00000028362.9	5172	35	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	111.726541471596	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTCCAAGAGTTTGTTC	NA	False	NA	NA	False	NA	NA	NA	60213575	60124103	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_60124283_60129390_60129559_60131298_60131422_60133921_60134072_60136673_60136843_60138482_60138710_60141952_60142148_60144500_60144618_60146432_60146601_60148651_60148818_60152041_60152269_60154162_60154293_60158130_60158292_60158733_60158840_60160319_60160460_60161069_60161153_60161420_60161489_60162662_60162839_60163268_60163305_60164793_60164909_60168638_60168708_60170496_60170579_60178696_60178840_60180201_60180402_60182399_60182570_60182697_60182787_60183265_60183377_60184748_60184907_60185712_60185905_60187620_60187762_60188811_60188923_60195354_60195520_60199102_60199274_60206201_60206574_60213481
transcript_50767.nic	chr2	-	1515	9	ISM	ENSMUSG00000026980.16	ENSMUST00000028362.9	5172	35	-52	59214	20	-59214	5prime_fragment	FALSE	canonical	3	506	junction_3	46.8386525745564	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAGAAATAACTAAGGATG	NA	False	NA	NA	False	AAGAAA	-24	NA	60213627	60183317	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_60183377_60184748_60184907_60185712_60185905_60187620_60187762_60188811_60188923_60195354_60195520_60199102_60199274_60206201_60206574_60213481
transcript_50769.nic	chr2	-	2173	6	ISM	ENSMUSG00000026980.16	ENSMUST00000028362.9	5172	35	-107	62505	-35	-62505	5prime_fragment	FALSE	canonical	3	533	junction_4	45.5174691739336	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATCTGGATAAATGGAACAA	NA	False	NA	NA	False	NA	NA	NA	60213682	60186608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_60187762_60188811_60188923_60195354_60195520_60199102_60199274_60206201_60206574_60213481
transcript_50770.nic	chr2	-	1234	6	ISM	ENSMUSG00000026980.16	ENSMUST00000028362.9	5172	35	-107	63444	-35	-63444	5prime_fragment	FALSE	canonical	3	533	junction_4	45.5174691739336	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTCTCCTTTCCTTCCCT	NA	False	NA	NA	False	AGTAAA	-15	NA	60213682	60187547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_60187762_60188811_60188923_60195354_60195520_60199102_60199274_60206201_60206574_60213481
transcript_50771.nic	chr2	-	1003	4	ISM	ENSMUSG00000026980.16	ENSMUST00000028362.9	5172	35	-107	71157	-35	-71157	5prime_fragment	FALSE	canonical	3	533	junction_2	53.4249213590645	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCCTTTCTGGCCTCTCTT	NA	False	NA	NA	False	NA	NA	NA	60213682	60195260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_60195520_60199102_60199274_60206201_60206574_60213481
transcript_50773.nic	chr2	-	1564	2	ISM	ENSMUSG00000026980.16	ENSMUST00000028362.9	5172	35	-107	81107	-35	-81107	5prime_fragment	FALSE	canonical	3	663	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTACTTTACTCTAAGAATT	NA	False	NA	NA	False	NA	NA	NA	60213682	60205210	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_60206574_60213481
transcript_50774.known	chr2	-	6901	35	FSM	ENSMUSG00000026980.16	ENSMUST00000112533.8	6901	35	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_19	109.794243708662	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAATCTCCTTGGCTCAG	NA	False	NA	-11	True	AATAAA	-20	NA	60213647	60122446	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_60124283_60129390_60129559_60131298_60131422_60133921_60134072_60136673_60136843_60138482_60138710_60141952_60142148_60144500_60144618_60146432_60146601_60148651_60148818_60152041_60152269_60154162_60154293_60158130_60158292_60158733_60158840_60160319_60160460_60161069_60161153_60161420_60161489_60162662_60162839_60163268_60163301_60164789_60164909_60168638_60168708_60170496_60170579_60178696_60178840_60180201_60180402_60182399_60182570_60182697_60182787_60183265_60183377_60184748_60184907_60185712_60185905_60187620_60187762_60188811_60188923_60195354_60195520_60199102_60199274_60206201_60206574_60213481
transcript_50795.known	chr2	+	566	3	FSM	ENSMUSG00000087283.2	ENSMUST00000131457.2	566	3	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_2	3	703	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGGTGGTATACCCTTAT	9346	False	NA	NA	False	NA	NA	NA	60241868	60242923	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_60242062_60242190_60242353_60242712
transcript_50797.known	chr2	-	1806	15	FSM	ENSMUSG00000026970.17	ENSMUST00000112509.2	1806	15	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_6	64.9034211858871	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CGGAAAAAAAATCAAAGATT	NA	False	NA	NA	False	NA	NA	NA	60711814	60583065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_60583327_60584073_60584159_60585759_60585841_60586779_60586891_60589147_60589199_60590102_60590151_60592396_60592491_60592613_60592664_60593579_60593687_60610074_60610155_60612204_60612363_60623032_60623125_60628027_60628087_60672640_60672817_60711461
transcript_5080.known	chr1	-	1828	8	FSM	ENSMUSG00000052534.16	ENSMUST00000176790.8	1828	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1.1780301787479	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGTGGTTTGAGGAGGC	NA	False	NA	NA	False	AATAAA	-19	NA	168259319	167985898	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_167986394_168011098_168011189_168018846_168019007_168023316_168023453_168030915_168031107_168036919_168037165_168255437_168255512_168258882
transcript_50800.nic	chr2	-	1967	15	NIC	ENSMUSG00000026970.17	novel	1806	15	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_14	91.0514824095665	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CGGAAAAAAAATCAAAGATT	NA	False	NA	NA	False	NA	NA	NA	60793548	60583065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_60583327_60584073_60584159_60585759_60585841_60586779_60586891_60589147_60589199_60590102_60590151_60592396_60592491_60592613_60592664_60593579_60593687_60610074_60610155_60612204_60612363_60623032_60623125_60628027_60628087_60672640_60672817_60793034
transcript_50802.nic	chr2	-	2154	14	NIC	ENSMUSG00000026970.17	novel	2543	15	NA	NA	89	-252	combination_of_known_junctions	FALSE	canonical	3	198	junction_5	40.1883141188577	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTAGTAGGTGTTTTTAA	NA	False	NA	-5	True	AATAAA	-28	NA	60711693	60582548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_60583327_60584073_60584159_60585759_60585841_60586779_60586891_60589147_60589199_60592396_60592491_60592613_60592664_60593579_60593687_60610074_60610155_60612204_60612363_60623032_60623125_60628027_60628087_60672640_60672817_60711461
transcript_50803.known	chr2	-	4436	14	FSM	ENSMUSG00000026970.17	ENSMUST00000028347.13	4436	14	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_13	80.5716264093541	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTCCTGTCGGTTTTTTG	NA	False	NA	0	True	AATAAA	-17	NA	60793536	60580536	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_60583327_60584073_60584159_60585759_60585841_60586779_60586891_60589147_60589199_60592396_60592491_60592613_60592664_60593579_60593687_60610074_60610155_60612204_60612363_60623032_60623125_60628027_60628087_60672640_60672817_60793034
transcript_50809.known	chr2	+	2227	9	FSM	ENSMUSG00000064289.16	ENSMUST00000112501.9	2227	9	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	22.4996527750986	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTCTGATGGGATTTA	NA	False	NA	NA	False	AATAAA	-30	NA	61423440	61484515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_61423553_61424340_61424546_61443994_61444143_61457246_61457359_61458064_61458184_61474058_61474130_61474650_61474767_61480081_61480633_61483722
transcript_50810.known	chr2	+	2039	8	FSM	ENSMUSG00000064289.16	ENSMUST00000112495.8	2039	8	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	9.53190132434987	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTCTGATGGGATTTA	NA	False	NA	NA	False	AATAAA	-30	NA	61423420	61484515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_61423553_61443994_61444143_61457249_61457359_61458064_61458184_61474058_61474130_61474650_61474767_61480081_61480633_61483722
transcript_50813.known	chr2	+	2061	10	FSM	ENSMUSG00000064289.16	ENSMUST00000141544.8	2061	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	24.6175687540022	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTTACGTCGTGCTTAT	NA	False	NA	NA	False	ATTAAA	-18	NA	61423508	61484434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_61423553_61443994_61444143_61457249_61457359_61458064_61458184_61459628_61459717_61474058_61474130_61474650_61474767_61480081_61480633_61481770_61481874_61483722
transcript_50814.known	chr2	+	2698	7	FSM	ENSMUSG00000064289.16	ENSMUST00000112494.2	2698	7	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	10.286182749473	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTCTGCTCTGTGTGGTT	NA	False	NA	NA	False	TATAAA	-14	NA	61423479	61482143	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_61423553_61443994_61444143_61457249_61457359_61458064_61458184_61474058_61474130_61474650_61474767_61480081
transcript_50826.known	chr2	+	1541	12	FSM	ENSMUSG00000026914.16	ENSMUST00000028278.14	1541	12	0	0	0	0	multi-exon	FALSE	canonical	3	1717	junction_5	150.997564426748	14319	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCCGAGGTCTTTTTG	8547	False	NA	31	True	AATAAA	-17	NA	61542037	61630720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_61542218_61550787_61550916_61553053_61553106_61590979_61591052_61591318_61591439_61594180_61594252_61595192_61595344_61607016_61607125_61614176_61614252_61615777_61615904_61627738_61627802_61630325
transcript_5083.known	chr1	-	2068	15	FSM	ENSMUSG00000026683.15	ENSMUST00000028000.13	2068	15	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_14	29.0531708199618	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGTTATCCAGGATGTT	NA	False	NA	-9	True	AATAAA	-26	NA	169358997	169325879	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_169326490_169332033_169332170_169333550_169333727_169334812_169334954_169337968_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344228_169349939_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169356304_169356381_169358890
transcript_50830.nic	chr2	-	1923	9	ISM	ENSMUSG00000035000.9	ENSMUST00000047812.8	5268	26	55413	1559	889	-1559	3prime_fragment	FALSE	canonical	3	241	junction_6	20.4110111214511	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAATGGGTTATGTCTTGA	NA	False	NA	-3	True	AGTAAA	-20	NA	62187162	62161975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_62163064_62164599_62164674_62164940_62165014_62175399_62175465_62178161_62178262_62178844_62178900_62182465_62182661_62184882_62184953_62186959
transcript_50831.nic	chr2	-	1840	9	ISM	ENSMUSG00000035000.9	ENSMUST00000047812.8	5268	26	55413	1642	889	-1642	3prime_fragment	FALSE	canonical	3	241	junction_6	20.4110111214511	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAATGTTTTGTGTTATT	NA	False	NA	-39	True	ATTAAA	-39	NA	62187162	62162058	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_62163064_62164599_62164674_62164940_62165014_62175399_62175465_62178161_62178262_62178844_62178900_62182465_62182661_62184882_62184953_62186959
transcript_50833.nnic	chr2	-	1780	8	NIC	ENSMUSG00000035000.9	novel	5268	26	NA	NA	879	-1642	combination_of_known_splicesites	FALSE	canonical	2	4	junction_7	99.5481628895977	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAATGTTTTGTGTTATT	NA	False	NA	-39	True	ATTAAA	-39	NA	62187172	62162058	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_62163064_62164599_62164674_62164940_62165014_62175399_62175465_62178161_62178262_62178844_62178900_62182465_62182661_62186959
transcript_50837.known	chr2	-	5268	26	FSM	ENSMUSG00000035000.9	ENSMUST00000047812.8	5268	26	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_12	33.8302586451833	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACCAAAACACAAGCATGTT	NA	False	NA	NA	False	AATAAA	-18	NA	62242575	62160416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_62163064_62164599_62164674_62164940_62165014_62175399_62175465_62178161_62178262_62178844_62178900_62182465_62182661_62184882_62184953_62186959_62187059_62187303_62187352_62189127_62189250_62189620_62189675_62190628_62190697_62190952_62191061_62193005_62193051_62195271_62195408_62203098_62203212_62204709_62204871_62208547_62208669_62209440_62209514_62209620_62209674_62215517_62215587_62216774_62216867_62217408_62217505_62241558_62241644_62242129
transcript_50839.known	chr2	+	3330	8	FSM	ENSMUSG00000026893.5	ENSMUST00000028257.3	3330	8	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_6	22.3332825667003	326	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGCTCCAATTCCCAGACT	NA	False	NA	NA	False	TTTAAA	-18	NA	62494628	62524453	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_62494804_62502620_62502795_62509499_62509570_62516308_62516353_62516620_62516769_62520304_62520419_62520734_62520794_62521907
transcript_50846.known	chr2	-	1986	14	FSM	ENSMUSG00000026888.15	ENSMUST00000028252.14	1986	14	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_8	3.05182068075037	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCGTGTTCTTGTGTGAT	NA	False	NA	NA	False	ATTAAA	-17	NA	64853126	64742819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_64743198_64745059_64745154_64747172_64747261_64747378_64747452_64747542_64747660_64753880_64753962_64760243_64760340_64760529_64760641_64763563_64763702_64766760_64766836_64768712_64768835_64783905_64784063_64851430_64851564_64852803
transcript_50854.known	chr2	+	10672	7	FSM	ENSMUSG00000044647.17	ENSMUST00000122912.8	10672	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	4.6696419087073	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTATTGCGTTTTTATT	5603	False	NA	11	True	AGTAAA	-19	NA	65676110	65861890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_65676229_65690874_65691037_65708308_65708397_65779302_65779474_65832646_65832907_65849783_65850081_65852314
transcript_50855.known	chr2	+	4495	6	FSM	ENSMUSG00000044647.17	ENSMUST00000053910.10	4495	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	3.18747549010185	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGAGAAGAGAATTTTG	5678	False	NA	NA	False	NA	NA	NA	65676185	65855950	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_65676229_65708308_65708397_65779302_65779474_65832646_65832907_65849783_65850081_65852314
transcript_5086.known	chr1	-	2405	14	FSM	ENSMUSG00000026683.15	ENSMUST00000111368.8	2405	14	0	0	0	0	multi-exon	TRUE	canonical	3	65	junction_13	32.5556419455247	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCTTGGGCAAATGGAT	NA	False	NA	NA	False	NA	NA	NA	169359033	169325502	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_169326490_169332033_169332170_169333550_169333727_169334812_169334954_169337968_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344228_169349939_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169358890
transcript_50863.known	chr2	+	2566	5	FSM	ENSMUSG00000044647.17	ENSMUST00000145598.9	2566	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	4.32290411644765	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTGTATTTTATTTATG	NA	False	NA	13	True	AAAAAG	-12	NA	65762208	65853828	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_65762533_65779302_65779474_65832646_65832907_65849783_65850081_65852314
transcript_50869.nic	chr2	-	1271	6	ISM	ENSMUSG00000034848.18	ENSMUST00000125446.3	4061	28	-74	57559	-49	-11086	5prime_fragment	FALSE	canonical	2	9	junction_3	7.79743547584717	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTTGAATTGCATCAATA	NA	False	NA	NA	False	AATAAA	-21	NA	66087010	66072545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_66073133_66077651_66077775_66079738_66079906_66082237_66082349_66082446_66082577_66086857
transcript_50870.nic	chr2	-	1078	6	ISM	ENSMUSG00000034848.18	ENSMUST00000125446.3	4061	28	-74	57752	-49	-11279	5prime_fragment	FALSE	canonical	2	9	junction_3	7.79743547584717	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTGATTCTGAACTTC	NA	False	NA	NA	False	NA	NA	NA	66087010	66072738	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_66073133_66077651_66077775_66079738_66079906_66082237_66082349_66082446_66082577_66086857
transcript_50876.known	chr2	+	7038	10	FSM	ENSMUSG00000027035.11	ENSMUST00000028426.9	7038	10	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_8	6.54896090146283	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCATGAGTGTCCTTTATT	NA	False	NA	5	True	AATAAA	-18	NA	68691784	68944626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_68692150_68764858_68764965_68777570_68777702_68833090_68833149_68877488_68877540_68881123_68881217_68898972_68899102_68901675_68901783_68935346_68935504_68938785
transcript_50877.nnic	chr2	+	1846	9	NNC	ENSMUSG00000027035.11	novel	7038	10	NA	NA	-4	14398	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_8	20.2727495668447	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTGTCCAGTTACTAAAA	NA	False	NA	NA	False	CATAAA	-15	NA	68691780	68916283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_68692150_68764858_68764965_68777570_68777702_68833090_68833149_68877488_68877540_68881123_68881217_68898972_68899102_68901675_68901783_68915481
transcript_50883.known	chr2	-	1527	7	FSM	ENSMUSG00000005233.17	ENSMUST00000112320.8	1527	7	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_6	307.891214554751	606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTAACTCTCTCTTC	NA	False	NA	-10	True	NA	NA	NA	69036479	69024238	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_69024890_69027478_69027578_69030328_69030434_69032915_69033063_69035199_69035266_69035369_69035523_69036173
transcript_50886.known	chr2	-	1352	7	FSM	ENSMUSG00000005233.17	ENSMUST00000005365.15	1352	7	0	0	0	0	multi-exon	FALSE	canonical	3	811	junction_6	34.6121365997536	4422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTAACTCTCTCTTC	NA	False	NA	-10	True	NA	NA	NA	69036538	69024238	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_69024890_69027478_69027578_69030328_69030434_69032915_69033063_69035199_69035266_69035369_69035523_69036407
transcript_50888.known	chr2	+	1468	12	FSM	ENSMUSG00000063145.11	ENSMUST00000074963.9	1468	12	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_4	9.81144550053239	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATGTTTTGAAAGTATTA	NA	False	NA	6	True	AATAAA	-20	NA	69477551	69497915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_69477687_69479365_69479449_69483125_69483192_69484406_69484457_69484589_69484718_69485842_69485979_69487240_69487337_69491379_69491443_69493369_69493505_69495369_69495454_69497284_69497309_69497447
transcript_50890.known	chr2	+	1124	11	FSM	ENSMUSG00000063145.11	ENSMUST00000134659.8	1124	11	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	27.5109069279804	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATAGGCTTGGGATATTT	NA	False	NA	NA	False	ATTAAA	-18	NA	69477514	69497662	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_69477687_69479365_69479449_69483125_69483192_69484406_69484457_69485842_69485979_69487240_69487337_69491379_69491443_69493369_69493505_69495369_69495454_69497284_69497309_69497447
transcript_50892.known	chr2	-	2865	14	FSM	ENSMUSG00000027086.17	ENSMUST00000073152.13	2865	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	59.5439273976854	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTATGGCCCACCATATA	7965	False	NA	NA	False	NA	NA	NA	69542950	69517158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_69517485_69520406_69520522_69521578_69521709_69524212_69524327_69524859_69524992_69527186_69527316_69530467_69530583_69532706_69533194_69534596_69534729_69535765_69535877_69537651_69538051_69538854_69538981_69541837_69541907_69542470
transcript_50896.known	chr2	+	6127	14	FSM	ENSMUSG00000042133.17	ENSMUST00000090858.10	6127	14	0	0	0	0	multi-exon	TRUE	canonical	3	282	junction_1	41.7748260879032	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGGATTGTGCTTTTTAT	NA	False	NA	NA	False	AATAAA	-19	NA	69553148	69584356	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_69553302_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332_69566473_69571829_69572038_69573956_69574125_69576371_69576460_69579304_69579442_69579615
transcript_50898.known	chr2	+	6245	14	FSM	ENSMUSG00000042133.17	ENSMUST00000040915.15	6245	14	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	98.4826299525295	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGGATTGTGCTTTTTAT	NA	False	NA	NA	False	AATAAA	-19	NA	69553436	69584356	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_69553708_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332_69566473_69571829_69572038_69573956_69574125_69576371_69576460_69579304_69579442_69579615
transcript_50904.nic	chr2	+	1000	11	NIC	ENSMUSG00000042133.17	novel	6127	14	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	54	junction_1	133.943420891061	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAGGAAAAAGAAACA	NA	False	NA	NA	False	AAGAAA	-6	NA	69553151	69571957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_69553302_69561834_69561925_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332_69566473_69571829
transcript_50909.known	chr2	+	693	2	FSM	ENSMUSG00000042133.17	ENSMUST00000153772.2	693	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCTTATGGAAGCACCA	NA	False	NA	NA	False	NA	NA	NA	69552888	69554133	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_69553302_69553853
transcript_5091.known	chr1	-	1271	11	FSM	ENSMUSG00000026683.15	ENSMUST00000192248.2	1271	11	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_10	33.1324614238061	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTAAAGTGTGGGTTTTT	NA	False	NA	-3	True	AATACA	-15	NA	169358980	169337685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344228_169349939_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169356304_169356381_169358890
transcript_50910.known	chr2	-	1844	9	FSM	ENSMUSG00000070883.4	ENSMUST00000094942.4	1844	9	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_5	1.58113883008419	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGGTTTGATTCTTTGCA	NA	False	NA	NA	False	AATAAA	-18	NA	69619919	69588376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_69588810_69592065_69592231_69602275_69602469_69606473_69606614_69608403_69608561_69611982_69612177_69612288_69612463_69617503_69617731_69619758
transcript_5092.nic	chr1	-	1313	10	ISM	ENSMUSG00000026683.15	ENSMUST00000111368.8	2405	14	-65	12183	-65	0	5prime_fragment	FALSE	canonical	3	65	junction_9	38.1284379142101	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTAAAGTGTGGGTTTTT	NA	False	NA	-3	True	AATACA	-15	NA	169359098	169337685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344228_169349939_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169358890
transcript_50921.known	chr2	+	2194	4	FSM	ENSMUSG00000027088.11	ENSMUST00000112266.8	2194	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	37.7918274528002	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTCTTCTGAAATCTTTT	NA	False	NA	26	True	AATAAA	-16	NA	69619993	69627567	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_69620249_69620629_69620666_69622680_69622836_69625819
transcript_50924.known	chr2	+	2260	4	FSM	ENSMUSG00000027088.11	ENSMUST00000028494.9	2260	4	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_2	4.49691252107735	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTCTTCTGAAATCTTTT	NA	False	NA	26	True	AATAAA	-16	NA	69619979	69627567	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_69620301_69620629_69620666_69622680_69622836_69625819
transcript_50925.known	chr2	+	4617	4	FSM	ENSMUSG00000042155.4	ENSMUST00000053087.4	4617	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.78423336480244	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTGTCTGGTCTTTTT	5472	False	NA	NA	False	TATAAA	-41	NA	69652713	69666995	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_69652987_69654130_69655345_69659189_69659343_69664018
transcript_50931.known	chr2	+	2088	12	FSM	ENSMUSG00000068882.14	ENSMUST00000166411.8	2088	12	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	503.342431457735	946	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCTCACTTTGGACATA	NA	False	NA	22	True	ATTAAA	-23	NA	69691905	69702190	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_69692084_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
transcript_50940.known	chr2	+	634	6	FSM	ENSMUSG00000068882.14	ENSMUST00000112260.3	634	6	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	695.864527045315	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTCTTTTCTTAGGTTT	NA	False	NA	NA	False	NA	NA	NA	69692029	69697896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_69692084_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795
transcript_50943.known	chr2	+	2001	12	FSM	ENSMUSG00000068882.14	ENSMUST00000090852.11	2001	12	0	0	0	0	multi-exon	FALSE	canonical	3	1543	junction_7	118.150135613357	3390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGCCAAACATT	NA	False	NA	-38	True	NA	NA	NA	69691905	69702130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_69692057_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
transcript_50944.known	chr2	-	851	6	FSM	ENSMUSG00000051730.16	ENSMUST00000142127.8	851	6	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_3	209.013492387453	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTACTTGTCTCTAGCAC	6824	False	NA	-21	True	AATAAA	-18	NA	69715941	69701557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_69701661_69702075_69702126_69704227_69704280_69711110_69711293_69711640_69711756_69715592
transcript_50945.known	chr2	+	991	6	FSM	ENSMUSG00000068882.14	ENSMUST00000132603.2	991	6	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_4	654.178874620696	5415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAATAGTTCTTTCTTCTT	NA	False	NA	14	True	TATAAA	-5	NA	69699122	69701854	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701024_69701178_69701465
transcript_50946.known	chr2	-	968	7	FSM	ENSMUSG00000051730.16	ENSMUST00000060447.13	968	7	0	0	0	0	multi-exon	FALSE	canonical	3	432	junction_3	75.5058864519111	3340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACCATTTTCTCTTTTCTT	6806	False	NA	-5	True	AATAAA	-34	NA	69715959	69701541	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_69701661_69702075_69702126_69704227_69704280_69709445_69709529_69711110_69711293_69711640_69711756_69715592
transcript_50947.known	chr2	-	2090	4	FSM	ENSMUSG00000051730.16	ENSMUST00000135487.2	2090	4	0	0	0	0	multi-exon	FALSE	canonical	3	529	junction_1	42.2926313518876	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGCAAAAAGAAAAAGAAAGT	6817	False	NA	NA	False	NA	NA	NA	69715948	69708091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_69709529_69711110_69711293_69711640_69711756_69715592
transcript_50959.known	chr2	-	608	2	FSM	ENSMUSG00000086515.2	ENSMUST00000150702.2	608	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAGAAAAGATTAACGAG	NA	False	NA	NA	False	NA	NA	NA	70339543	70333776	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_70334300_70339458
transcript_50960.known	chr2	+	3355	17	FSM	ENSMUSG00000070880.11	ENSMUST00000094934.11	3355	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	3.61420807370024	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTTGTACCCATTTTTTT	NA	False	NA	6	True	AATAAA	-22	NA	70392385	70432358	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_70392677_70394111_70394255_70397529_70397593_70403049_70403209_70404412_70404656_70409454_70409546_70416177_70416291_70417466_70417583_70417666_70417747_70417977_70418033_70420116_70420234_70421449_70421515_70423775_70423855_70424967_70425118_70427505_70427614_70429952_70430043_70430966
transcript_50961.known	chr2	-	4280	20	FSM	ENSMUSG00000041997.17	ENSMUST00000038584.9	4280	20	0	0	0	0	multi-exon	TRUE	canonical	3	163	junction_17	29.5425886295749	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTGTGAAAATTACACTCA	NA	False	NA	NA	False	AATAAA	-22	NA	70656072	70542750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_70544510_70546955_70547064_70548125_70548238_70551417_70551554_70551901_70552072_70552250_70552433_70554345_70554428_70555823_70555922_70568764_70568832_70572397_70572587_70575846_70575984_70576277_70576389_70579578_70579672_70580778_70580869_70582578_70582675_70584783_70584831_70587817_70587894_70600347_70600420_70617220_70617340_70655536
transcript_50966.known	chr2	+	1196	9	FSM	ENSMUSG00000014959.13	ENSMUST00000112205.2	1196	9	0	0	0	0	multi-exon	FALSE	canonical	3	630	junction_6	27.9463772249642	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGAGGCCTCCCGTTCAGTC	NA	False	NA	9	True	AATAAA	-18	NA	70491933	70519704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_70492105_70506808_70506890_70508242_70508447_70508871_70508959_70509775_70509907_70513240_70513374_70514323_70514448_70518729_70518817_70519526
transcript_50967.known	chr2	+	2238	10	FSM	ENSMUSG00000014959.13	ENSMUST00000028509.11	2238	10	0	0	0	0	multi-exon	FALSE	canonical	3	519	junction_9	56.2121203045731	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGCGTGTACTTCATGTGT	NA	False	NA	38	True	AATAAA	-38	NA	70491919	70522087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_70492105_70506808_70506890_70508242_70508447_70508871_70508959_70509775_70509907_70513240_70513374_70514323_70514448_70518729_70518817_70519526_70519647_70521001
transcript_50976.nnic	chr2	+	2020	15	NNC	ENSMUSG00000041966.19	novel	1905	15	NA	NA	-9	-1464	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_14	52.7831528471898	59	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTCCATGGTTGTCCAC	NA	False	NA	NA	False	NA	NA	NA	70886078	70924738	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_70886464_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70908817_70908924_70912254_70912398_70914768_70914879_70916882_70916971_70917658_70917743_70918690_70918847_70920132_70920278_70924541
transcript_50977.known	chr2	+	1905	15	FSM	ENSMUSG00000041966.19	ENSMUST00000064141.12	1905	15	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_14	54.6553207074357	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGGCTTTATGACTATCC	NA	False	NA	12	True	AATAAA	-21	NA	70886124	70929486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_70886464_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70908817_70908924_70912254_70912398_70914768_70914879_70916882_70916971_70917658_70917743_70918690_70918847_70920132_70920278_70929358
transcript_50979.nic	chr2	+	2292	14	NIC	ENSMUSG00000041966.19	novel	7739	14	NA	NA	-9	327	combination_of_known_junctions	TRUE	canonical	3	27	junction_1	53.8095479968128	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAACATATCAATTCTA	NA	False	NA	-2	True	NA	NA	NA	70886078	70920949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_70886261_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70908817_70908924_70912254_70912398_70914768_70914879_70916882_70916971_70917658_70917743_70918690_70918847_70920132
transcript_5098.known	chr1	+	1731	4	FSM	ENSMUSG00000070532.6	ENSMUST00000094348.4	1731	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	0.816496580927726	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCTCTGGTCTCCTTTTG	NA	False	NA	NA	False	GATAAA	-14	NA	169756216	169762222	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_169756573_169757487_169757730_169760563_169760685_169761210
transcript_50981.known	chr2	+	7739	14	FSM	ENSMUSG00000041966.19	ENSMUST00000154704.8	7739	14	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_11	23.2697075602773	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGTGTGTATACATATGT	NA	False	NA	5	True	NA	NA	NA	70886087	70926202	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_70886464_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70908817_70908924_70912254_70912398_70914768_70914879_70916882_70916971_70917658_70917743_70918690_70918847_70920132
transcript_5099.known	chr1	-	4612	9	FSM	ENSMUSG00000026675.13	ENSMUST00000027989.13	4612	9	0	0	0	0	multi-exon	TRUE	canonical	3	45	junction_1	8.48528137423857	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTAGACTCAGTTAATTT	NA	False	NA	-1	True	AATAAA	-18	NA	169796810	169777103	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_169780704_169783503_169783603_169786991_169787049_169787255_169787361_169788573_169788769_169791959_169792075_169793255_169793349_169794798_169795003_169796666
transcript_50996.nic	chr2	+	1407	10	ISM	ENSMUSG00000041966.19	ENSMUST00000102701.5	1703	13	-117	4053	-9	1133	5prime_fragment	FALSE	canonical	3	195	junction_1	18.2357673234921	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACATTGTTGTTTTCAAT	NA	False	NA	NA	False	ATTAAA	-21	NA	70886078	70914935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_70886464_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70908817_70908924_70912254_70912398_70914768
transcript_50997.nic	chr2	-	2142	10	NIC	ENSMUSG00000041975.18	novel	2347	10	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_7	29.4505234814822	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTTGTTGGAGTTTT	NA	False	NA	0	True	NA	NA	NA	70885950	70794904	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_70796024_70796791_70796858_70797393_70797501_70803596_70803737_70806417_70806482_70810720_70810771_70812198_70812312_70823827_70823920_70848563_70848719_70885714
transcript_50998.known	chr2	-	2347	10	FSM	ENSMUSG00000041975.18	ENSMUST00000112186.9	2347	10	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_7	14.8332292963476	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTTGTTGGAGTTTT	NA	False	NA	0	True	NA	NA	NA	70885927	70794904	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_70796024_70796791_70796858_70797393_70797501_70803596_70803737_70806417_70806482_70810720_70810771_70812198_70812540_70823827_70823920_70848563_70848719_70885714
transcript_51.known	ERCC-00099	+	1344	1	FSM	ERCC-00099A	DQ875387	1344	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00099_+_0_1300
transcript_51005.known	chr2	+	2490	8	FSM	ENSMUSG00000041966.19	ENSMUST00000112159.9	2490	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_7	72.4419542440282	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGTATTGCATACTCTATA	NA	False	NA	NA	False	AATAAA	-19	NA	70886127	70913802	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_70886464_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70912254
transcript_51012.known	chr2	+	5339	4	FSM	ENSMUSG00000027015.5	ENSMUST00000028403.3	5339	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	0.471404520791032	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTCTTTCTGTGTG	NA	False	NA	NA	False	AATAAA	-14	NA	70948266	70973270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_70948657_70959996_70960206_70967832_70967988_70968685
transcript_51014.known	chr2	+	2466	16	FSM	ENSMUSG00000027012.16	ENSMUST00000112138.8	2466	16	0	0	0	0	multi-exon	FALSE	canonical	3	270	junction_1	83.3153580613376	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTCTCAAATTTTCACT	NA	False	NA	12	True	AATAAA	-14	NA	71042101	71093635	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_71042190_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
transcript_51017.known	chr2	+	2631	16	FSM	ENSMUSG00000027012.16	ENSMUST00000081710.12	2631	16	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_2	40.1836893389456	647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCACTTTTACTTTTTGA	NA	False	NA	24	True	AATAAA	-26	NA	71042177	71093647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_71042419_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
transcript_51024.nic	chr2	+	325	2	ISM	ENSMUSG00000027012.16	ENSMUST00000141619.8	679	8	-172	32468	-72	-15990	5prime_fragment	FALSE	canonical	3	270	junction_1	0	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGTATGTTTGATTCACT	NA	False	NA	34	True	NA	NA	NA	71041977	71044895	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_71042190_71044782
transcript_51025.nic	chr2	+	405	2	ISM	ENSMUSG00000027012.16	ENSMUST00000149735.2	2248	4	-221	15990	-23	-15990	5prime_fragment	FALSE	canonical	3	502	junction_1	0	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGTATGTTTGATTCACT	NA	False	NA	34	True	NA	NA	NA	71042126	71044895	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_71042419_71044782
transcript_51026.known	chr2	+	2097	17	FSM	ENSMUSG00000027012.16	ENSMUST00000100028.10	2097	17	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_4	189.242197659507	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCATGGATAATCTGGGTT	NA	False	NA	NA	False	ATTAAA	-18	NA	71042327	71093203	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_71042419_71044782_71044900_71049644_71049763_71058943_71059035_71063992_71064053_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
transcript_5103.known	chr1	-	1446	8	FSM	ENSMUSG00000026675.13	ENSMUST00000111353.4	1446	8	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_5	6.15115718331742	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATACTTCTCTGTGATCTT	NA	False	NA	NA	False	AATAAA	-24	NA	169796810	169783069	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_169783603_169786991_169787049_169787255_169787361_169788573_169788769_169791959_169792075_169793255_169793349_169794798_169795003_169796666
transcript_51030.known	chr2	-	6351	18	FSM	ENSMUSG00000027010.17	ENSMUST00000151937.8	6351	18	0	0	0	0	multi-exon	TRUE	canonical	3	27	junction_16	36.6501273382513	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCGTGTACATCTCTTG	NA	False	NA	NA	False	NA	NA	NA	71198093	71101406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71163948_71164065_71174233_71174377_71196870_71196925_71197856
transcript_51035.nnic	chr2	-	2805	16	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	-5295	420	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_15	22.4311291636323	54	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGGAGTTGGTTTCCTT	NA	False	NA	-3	True	AATAAA	-17	NA	71164479	71104613	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71163948_71164065_71164384
transcript_51037.nnic	chr2	-	2332	16	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	-5295	-53	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_15	22.4311291636323	48	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTCTCCTCCTGATGAC	NA	False	NA	-5	True	AATAAA	-16	NA	71164479	71105086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71163948_71164065_71164384
transcript_51040.nic	chr2	-	681	5	NIC	ENSMUSG00000027010.17	novel	550	3	NA	NA	-56	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	8.57321409974112	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGCTCTAGAATTTCTA	NA	False	NA	NA	False	AATAAA	-17	NA	71197933	71160083	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_71160375_71163948_71164065_71174233_71174377_71196870_71196925_71197856
transcript_51047.nic	chr2	-	1184	2	ISM	ENSMUSG00000027010.17	ENSMUST00000184169.8	2392	17	-56	90784	-56	-21584	5prime_fragment	FALSE	canonical	3	29	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAACCCAAAACAAACAA	NA	False	NA	NA	False	NA	NA	NA	71197933	71195817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_71196925_71197856
transcript_51048.known	chr2	+	473	1	FSM	ENSMUSG00000082190.2	ENSMUST00000117993.2	473	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCTAATGTACACAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	71150126	71150599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_71150100_71150600
transcript_51049.known	chr2	-	550	3	FSM	ENSMUSG00000027010.17	ENSMUST00000126493.8	550	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	12	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGCTCTAGAATTTCTA	NA	False	NA	NA	False	AATAAA	-17	NA	71174376	71160083	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_71160375_71163948_71164065_71174233
transcript_51058.known	chr2	+	1576	11	FSM	ENSMUSG00000027018.12	ENSMUST00000028408.3	1576	11	0	0	0	0	multi-exon	FALSE	canonical	3	1873	junction_8	150.054156890104	11279	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAACTTTGCATTTGAGTT	5118	False	NA	59	True	GATAAA	-16	NA	71219603	71271966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_71219649_71220246_71220343_71239331_71239408_71240486_71240608_71250518_71250699_71250933_71251056_71251554_71251660_71251976_71252084_71264398_71264551_71269039_71269157_71271511
transcript_5106.known	chr1	+	1135	3	FSM	ENSMUSG00000097503.3	ENSMUST00000180638.3	1135	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACGTTCCATTCCTTTTTC	NA	False	NA	NA	False	AATAAA	-24	NA	169796977	169799965	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_169797145_169798018_169798372_169799350
transcript_51060.nic	chr2	+	1358	11	NIC	ENSMUSG00000041921.17	novel	1321	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	4	junction_1	24.3969260358759	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATTGTGTCCAGTCTGTA	NA	False	NA	NA	False	NA	NA	NA	71283676	71355538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_71283743_71331122_71331214_71337128_71337287_71340084_71340235_71341755_71341905_71342469_71342513_71345980_71346145_71352876_71352975_71354145_71354194_71355060_71355140_71355226
transcript_51063.known	chr2	+	1321	10	FSM	ENSMUSG00000041921.17	ENSMUST00000037210.9	1321	10	0	0	0	0	multi-exon	TRUE	canonical	3	42	junction_6	11.0565326201412	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTATTGTGTCCAGTCT	NA	False	NA	NA	False	NA	NA	NA	71283619	71355535	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_71283743_71337128_71337287_71340084_71340235_71341755_71341905_71342469_71342513_71345980_71346145_71352876_71352975_71354145_71354194_71355060_71355140_71355226
transcript_5107.nnic	chr1	+	802	2	NIC	ENSMUSG00000097503.3	novel	1135	3	NA	NA	-20	0	combination_of_known_splicesites	FALSE	canonical	3	3	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACGTTCCATTCCTTTTTC	NA	False	NA	NA	False	AATAAA	-24	NA	169796957	169799965	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_169797145_169799350
transcript_51072.nnic	chr2	+	820	6	NNC	ENSMUSG00000041921.17	novel	1898	6	NA	NA	-11	-2410	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_5	25.0886428489068	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATGGGGAGTGTCCCAT	NA	False	NA	NA	False	AATAAA	-16	NA	71283665	71343889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_71283743_71337128_71337287_71340084_71340235_71341755_71341905_71342469_71342513_71343646
transcript_51073.known	chr2	+	1898	6	FSM	ENSMUSG00000041921.17	ENSMUST00000123858.8	1898	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	26.2022899762597	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTGAAAAAAAAAAAAAGGCT	NA	False	NA	NA	False	NA	NA	NA	71283676	71346299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_71283743_71337128_71337287_71340084_71340235_71341755_71341905_71342469_71342513_71344967
transcript_51076.known	chr2	+	2770	9	FSM	ENSMUSG00000041921.17	ENSMUST00000139045.8	2770	9	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_5	11.7147076361299	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATTGTGTCCAGTCTGTA	NA	False	NA	NA	False	NA	NA	NA	71283694	71355538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_71283743_71337128_71337287_71340084_71341905_71342469_71342513_71345980_71346145_71352876_71352975_71354145_71354194_71355060_71355140_71355226
transcript_51077.nnic	chr2	+	745	4	NNC	ENSMUSG00000064263.7	novel	641	4	NA	NA	-73	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	10.8730042868667	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATCAAGACTCGGTTGCT	NA	False	NA	5	True	ATTAAA	-18	NA	71549687	71561310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_71549853_71553633_71553841_71560693_71560778_71561021
transcript_51078.known	chr2	+	641	4	FSM	ENSMUSG00000064263.7	ENSMUST00000079720.6	641	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	6.53197264742181	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATCAAGACTCGGTTGCT	NA	False	NA	5	True	ATTAAA	-18	NA	71549760	71561310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_71549853_71553633_71553841_71560693_71560778_71561052
transcript_51079.nnic	chr2	+	748	4	NNC	ENSMUSG00000064263.7	novel	641	4	NA	NA	1362	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	13.0979218029257	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATCAAGACTCGGTTGCT	NA	False	NA	5	True	ATTAAA	-18	NA	71551122	71561310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_71551288_71553630_71553841_71560693_71560778_71561021
transcript_5108.known	chr1	-	2283	11	FSM	ENSMUSG00000026670.16	ENSMUST00000027981.8	2283	11	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_3	76.9519330491444	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCCTTGTTTCTACCTTA	NA	False	NA	-5	True	AATAAA	-15	NA	170002515	169969571	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_169970142_169970965_169971033_169975564_169975613_169976839_169977029_169977880_169978022_169978511_169978706_169984492_169984666_169986319_169986496_169988935_169989141_169994194_169994518_170002318
transcript_51080.nnic	chr2	+	600	4	NNC	ENSMUSG00000064263.7	novel	641	4	NA	NA	1409	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	13.8884444373331	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATCAAGACTCGGTTGCT	NA	False	NA	5	True	ATTAAA	-18	NA	71551169	71561310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_71551288_71553731_71553841_71560693_71560778_71561021
transcript_51081.nnic	chr2	+	575	3	NNC	ENSMUSG00000064263.7	novel	641	4	NA	NA	-110	0	at_least_one_novel_splicesite	TRUE	canonical	1	4	junction_1	15	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATCAAGACTCGGTTGCT	NA	False	NA	5	True	ATTAAA	-18	NA	71549650	71561310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_71549853_71560693_71560778_71561021
transcript_51082.nnic	chr2	+	495	3	NNC	ENSMUSG00000064263.7	novel	641	4	NA	NA	1405	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	16.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATCAAGACTCGGTTGCT	NA	False	NA	5	True	ATTAAA	-18	NA	71551165	71561310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_71551288_71560693_71560778_71561021
transcript_51083.nnic	chr2	+	1060	3	NNC	ENSMUSG00000064263.7	novel	641	4	NA	NA	9238	0	at_least_one_novel_splicesite	TRUE	canonical	3	8	junction_1	13	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATCAAGACTCGGTTGCT	NA	False	NA	5	True	ATTAAA	-18	NA	71558998	71561310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_71559686_71560693_71560778_71561021
transcript_51085.nnic	chr2	+	856	3	NNC	ENSMUSG00000087570.2	novel	622	3	NA	NA	0	-70	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGAAAGAGACTAGAAGGCC	NA	False	NA	NA	False	NA	NA	NA	71568158	71575671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_71568488_71573802_71573967_71575308
transcript_5109.known	chr1	+	581	1	FSM	ENSMUSG00000102193.2	ENSMUST00000194441.2	581	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTCAGCATAAAATAAATGC	NA	False	NA	NA	False	AAGAAA	-34	NA	170458489	170459070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_170458500_170459100
transcript_51091.known	chr2	+	5185	11	FSM	ENSMUSG00000006494.12	ENSMUST00000006669.6	5185	11	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_8	20.4606940253746	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTCATATTTCTGTAGCA	NA	False	NA	21	True	ATTAAA	-31	NA	71703567	71734202	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_71703910_71705749_71705892_71710382_71710455_71713766_71713952_71714186_71714277_71716325_71716404_71717725_71717803_71719239_71719339_71726032_71726144_71727990_71728105_71730327
transcript_51092.known	chr2	+	3334	20	FSM	ENSMUSG00000004085.15	ENSMUST00000090824.12	3334	20	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_12	12.7949955590981	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGATTGTATGGTGGCTA	3234	False	NA	NA	False	AATAAA	-22	NA	72115980	72272954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_72116200_72128531_72128725_72185901_72185990_72194971_72195074_72198744_72198811_72202070_72202100_72202214_72202353_72208977_72209065_72214474_72214550_72219813_72219921_72228633_72228770_72240492_72240538_72242273_72242305_72242414_72242555_72246884_72246948_72248298_72248392_72263711_72263829_72265574_72265650_72268545_72268697_72271575
transcript_51095.known	chr2	+	6663	12	FSM	ENSMUSG00000004085.15	ENSMUST00000135469.8	6663	12	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_11	6.87671841784634	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTTTGTTATGTGTCGCT	3325	False	NA	NA	False	AATAAA	-16	NA	72116071	72237846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_72116200_72128531_72128725_72185901_72185990_72194971_72195074_72198744_72198811_72202070_72202100_72202214_72202353_72208977_72209065_72214474_72214550_72219813_72219921_72228633_72228770_72232332
transcript_51096.known	chr2	+	1227	10	FSM	ENSMUSG00000004085.15	ENSMUST00000150126.8	1227	10	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_9	4.98887651569859	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAAAAAATATCTTTTTG	3374	False	NA	NA	False	NA	NA	NA	72116120	72220183	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_72116200_72128531_72128725_72185901_72185990_72194971_72195074_72198744_72198811_72202070_72202100_72202214_72202353_72208977_72209065_72214474_72214550_72219813
transcript_51098.nic	chr2	+	586	3	ISM	ENSMUSG00000004085.15	ENSMUST00000135204.2	559	4	-90	9045	-24	176	5prime_fragment	FALSE	canonical	3	32	junction_1	3	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTAAGAATGGTGTTTCC	3301	False	NA	NA	False	AATAAA	-17	NA	72116047	72186142	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_72116200_72128531_72128725_72185901
transcript_51108.known	chr2	+	2424	9	FSM	ENSMUSG00000055612.16	ENSMUST00000102691.11	2424	9	0	0	0	0	multi-exon	FALSE	canonical	3	1115	junction_3	87.0351042683353	2515	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTTTATTTTTGTTT	8569	False	NA	NA	False	AATAAA	-16	NA	72306502	72317237	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315093_72315519_72315657_72316063
transcript_5111.known	chr1	-	7246	16	FSM	ENSMUSG00000026663.7	ENSMUST00000027974.7	7246	16	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_10	11.1705963234835	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTGTCTGTACAAAGACA	NA	False	NA	2	True	AATAAA	-18	NA	170695340	170532242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_170537657_170574674_170574760_170614914_170615030_170616176_170616245_170621525_170621626_170622225_170622340_170627182_170627315_170642991_170643084_170646815_170647002_170662388_170662610_170668249_170668454_170669254_170669382_170676685_170676787_170680473_170680562_170682681_170682759_170695218
transcript_51115.known	chr2	-	3808	6	FSM	ENSMUSG00000027109.17	ENSMUST00000066003.7	3808	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	184.227685215876	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTGTTGTAGTCCGATG	2905	False	NA	-2	True	AATAAA	-22	NA	72810770	72766991	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_72768727_72770886_72771084_72776889_72777083_72800498_72801859_72809830_72809977_72810593
transcript_51117.known	chr2	+	370	3	FSM	ENSMUSG00000063714.16	ENSMUST00000135297.8	370	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	48.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCAGCAAGCTCTTCTGGC	NA	False	NA	NA	False	NA	NA	NA	72809767	72818786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_72809940_72817871_72817977_72818693
transcript_51118.known	chr2	+	364	3	FSM	ENSMUSG00000063714.16	ENSMUST00000146195.2	364	3	0	0	0	0	multi-exon	FALSE	canonical	1	21	junction_2	38	767	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTAGGTTCTTGGAAAATA	NA	False	NA	-41	True	AATGAA	-9	NA	72809859	72818890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_72809940_72817871_72817977_72818711
transcript_51120.known	chr2	-	2175	11	FSM	ENSMUSG00000027108.16	ENSMUST00000028517.13	2175	11	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_4	35.4120036145937	1797	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTTCGTTTCTAAGGGGT	NA	False	NA	-13	True	ATTAAA	-14	NA	73044791	72923144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_72924069_72927488_72927612_72929635_72929733_72930417_72930559_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
transcript_51121.known	chr2	-	905	8	FSM	ENSMUSG00000027108.16	ENSMUST00000100015.6	905	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	132.211333609089	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCGTGTTTTGTTCAATG	NA	False	NA	-1	True	AATAAA	-19	NA	73044677	72967870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_72968000_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
transcript_51122.known	chr2	-	1300	4	FSM	ENSMUSG00000027108.16	ENSMUST00000136684.2	1300	4	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_2	2.62466929133727	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAACCA	NA	False	NA	NA	False	NA	NA	NA	73044756	73028944	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_73029873_73033668_73033813_73043203_73043305_73044629
transcript_51125.known	chr2	+	3309	8	FSM	ENSMUSG00000008226.15	ENSMUST00000090811.11	3309	8	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_5	26.8791702981764	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTTGATCTTTGATAAA	NA	False	NA	NA	False	AATAAA	-30	NA	73142944	73168162	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_73143058_73145775_73145937_73148589_73148772_73149646_73149844_73152328_73152539_73160106_73160270_73161326_73161502_73166054
transcript_51133.known	chr2	+	611	5	FSM	ENSMUSG00000008226.15	ENSMUST00000139926.2	611	5	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	45.0222167379617	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTGACCGGGAACATCC	NA	False	NA	NA	False	NA	NA	NA	73143019	73152366	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_73143058_73145780_73145937_73148589_73148772_73149646_73149844_73152328
transcript_51137.known	chr2	+	1897	4	FSM	ENSMUSG00000008226.15	ENSMUST00000112050.2	1897	4	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	8.65383665716478	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGATTACTTTGGTTGTA	NA	False	NA	NA	False	AATAAA	-36	NA	73142997	73151140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_73143058_73145775_73145937_73148589_73148772_73149646
transcript_5114.nic	chr1	-	736	5	ISM	ENSMUSG00000026663.7	ENSMUST00000027974.7	7246	16	-99	136890	-99	-49277	5prime_fragment	FALSE	canonical	3	61	junction_2	5.2618912949623	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTCTATTTATTTTATTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	170695439	170669132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_170669382_170676685_170676787_170680473_170680562_170682681_170682759_170695218
transcript_51143.known	chr2	-	1113	9	FSM	ENSMUSG00000041777.13	ENSMUST00000136519.3	1113	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	36.3023329140153	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAAAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	73142911	73115360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_73115380_73116681_73116768_73117952_73118060_73134083_73134202_73136233_73136686_73136771_73136783_73137198_73137273_73140800_73140896_73142760
transcript_51153.known	chr2	+	493	2	FSM	ENSMUSG00000086382.2	ENSMUST00000147235.2	493	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTGCCAATTCTTTCTT	NA	False	NA	NA	False	AATGAA	-18	NA	73415203	73419552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_73415352_73419207
transcript_51154.known	chr2	+	680	2	FSM	ENSMUSG00000086382.2	ENSMUST00000125413.2	680	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGTTAACCATTTGTTTA	NA	False	NA	NA	False	NA	NA	NA	73415193	73419531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_73415550_73419207
transcript_51155.known	chr2	-	4050	13	FSM	ENSMUSG00000056486.19	ENSMUST00000112024.10	4050	13	0	0	0	0	multi-exon	FALSE	canonical	1	103	junction_1	53.6273147648555	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTTTGAGCTGCCTACTG	NA	False	NA	44	True	NA	NA	NA	73605690	73441003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_73443541_73445005_73445112_73448264_73448403_73454458_73454537_73455220_73455395_73462089_73462175_73490023_73490102_73509958_73510248_73537262_73537377_73540798_73540831_73546707_73546764_73551746_73551786_73605366
transcript_51162.known	chr2	-	2396	14	FSM	ENSMUSG00000027104.19	ENSMUST00000112017.8	2396	14	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_5	32.1212569481487	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTTGGAATCTTGAGCA	NA	False	NA	NA	False	AGTAAA	-4	NA	73722899	73648609	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73704013_73704090_73710628_73710726_73722818
transcript_51163.known	chr2	-	4195	14	FSM	ENSMUSG00000027104.19	ENSMUST00000112007.8	4195	14	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_11	109.668839867438	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTGTTTTTAATCTGT	NA	False	NA	1	True	AATAAA	-26	NA	73722975	73646852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73693512_73693583_73700966_73701030_73704013_73704090_73710628_73710726_73722818
transcript_51166.known	chr2	-	4037	13	FSM	ENSMUSG00000027104.19	ENSMUST00000112010.9	4037	13	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_9	68.6093510795398	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTGTTTTTAATCTGT	NA	False	NA	1	True	AATAAA	-26	NA	73722880	73646852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73693512_73693583_73704013_73704090_73710628_73710726_73722818
transcript_51169.known	chr2	-	4016	12	FSM	ENSMUSG00000027104.19	ENSMUST00000090802.11	4016	12	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_11	103.634928219724	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTGTTTTTAATCTGT	NA	False	NA	1	True	AATAAA	-26	NA	73722956	73646852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73693512_73693583_73704013_73704090_73722818
transcript_51170.known	chr2	-	3943	12	FSM	ENSMUSG00000027104.19	ENSMUST00000112016.9	3943	12	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_5	77.3989343681314	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTGTTTTTAATCTGT	NA	False	NA	1	True	AATAAA	-26	NA	73722983	73646852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73704013_73704090_73710628_73710726_73722818
transcript_51174.known	chr2	-	4210	14	FSM	ENSMUSG00000027104.19	ENSMUST00000055833.12	4210	14	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_13	80.0395612241018	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTGTTTTTAATCTGT	NA	False	NA	1	True	AATAAA	-26	NA	73722958	73646852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73704013_73704090_73710628_73710724_73722818
transcript_51184.known	chr2	-	714	5	FSM	ENSMUSG00000018770.10	ENSMUST00000018914.3	714	5	0	0	0	0	multi-exon	FALSE	canonical	3	2058	junction_4	989.165146727279	22399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGCTGTGATTTGTACT	NA	False	NA	-21	True	ATTAAA	-15	NA	73741670	73738790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_73739052_73739527_73739722_73740207_73740286_73741298_73741405_73741595
transcript_51185.known	chr2	-	723	5	FSM	ENSMUSG00000018770.10	ENSMUST00000111996.8	723	5	0	0	0	0	multi-exon	FALSE	canonical	3	880	junction_4	1495.60896878161	13868	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGCTGTGATTTGTACT	NA	False	NA	-21	True	ATTAAA	-15	NA	73741669	73738790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_73739052_73739527_73739722_73740207_73740286_73741298_73741405_73741585
transcript_51187.known	chr2	-	3321	14	FSM	ENSMUSG00000009207.16	ENSMUST00000111993.9	3321	14	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	86.7381968506344	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATGTCTGTGTCCAACA	NA	False	NA	29	True	AAAAAG	-43	NA	74409292	74350634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_74352642_74358435_74358519_74359974_74360146_74360849_74360921_74362219_74362326_74367647_74367846_74378181_74378234_74378318_74378403_74381404_74381446_74385331_74385391_74399284_74399473_74401278_74401321_74403881_74403971_74409162
transcript_51193.known	chr2	-	3195	13	FSM	ENSMUSG00000009207.16	ENSMUST00000064503.13	3195	13	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_6	31.6842056692114	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTGTTTATTTTTATTTT	NA	False	NA	-14	True	ATTAAA	-43	NA	74409292	74350677	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_74352642_74359974_74360146_74360849_74360921_74362219_74362326_74367647_74367846_74378181_74378234_74378318_74378403_74381404_74381446_74385331_74385391_74399284_74399473_74401278_74401321_74403881_74403971_74409162
transcript_51199.known	chr2	-	2120	12	FSM	ENSMUSG00000009207.16	ENSMUST00000134641.8	2120	12	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_8	78.2650719516906	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTTGTTAAATATCTAG	NA	False	NA	-14	True	AATAAA	-18	NA	74409275	74351676	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_74352642_74359974_74360146_74360849_74360921_74362219_74362326_74367647_74367846_74378181_74378234_74378318_74378403_74381404_74381446_74399284_74399473_74401278_74401321_74403881_74403971_74409162
transcript_5120.known	chr1	+	817	1	FSM	ENSMUSG00000096968.2	ENSMUST00000180542.2	817	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATAAGGTATTACTCAGC	2834	False	NA	NA	False	NA	NA	NA	170712633	170713450	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_170712600_170713400
transcript_51203.known	chr2	-	4096	5	FSM	ENSMUSG00000009207.16	ENSMUST00000154706.8	4096	5	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_2	34.6914975174033	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGAAAAGAAAAAGTATT	NA	False	NA	NA	False	AATGAA	-6	NA	74409260	74381711	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_74385391_74399284_74399473_74401278_74401321_74403881_74403971_74409162
transcript_51205.nic	chr2	-	1115	3	ISM	ENSMUSG00000009207.16	ENSMUST00000145293.2	483	4	-96	1270	-28	-1005	5prime_fragment	FALSE	canonical	3	274	junction_1	25	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCTGAAGTCTTTTAGTG	NA	False	NA	NA	False	AATACA	-43	NA	74409320	74400452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_74401321_74403881_74403971_74409162
transcript_51206.known	chr2	-	483	4	FSM	ENSMUSG00000009207.16	ENSMUST00000145293.2	483	4	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_1	38.0029238641216	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAATTTTTTTTAAATTGT	NA	False	NA	NA	False	AATAAA	-17	NA	74409224	74399182	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_74399473_74401278_74401321_74403881_74403971_74409162
transcript_51207.known	chr2	-	580	1	FSM	ENSMUSG00000075279.6	ENSMUST00000173086.2	580	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4407	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACACTGACTGGCCGGGCG	NA	False	NA	NA	False	NA	NA	NA	74422253	74421673	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_74421700_74422300
transcript_51208.known	chr2	+	1816	2	FSM	ENSMUSG00000050368.5	ENSMUST00000061745.5	1816	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCCTTCTGCTTTCTGAA	NA	False	NA	NA	False	AATAAA	-16	NA	74522267	74525449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_74523069_74524434
transcript_5121.known	chr1	-	911	6	FSM	ENSMUSG00000026659.14	ENSMUST00000166393.2	911	6	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_5	89.0002247188174	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACAGTGCTCCTGTGGTCG	NA	False	NA	NA	False	NA	NA	NA	170712965	170702088	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_170702140_170707228_170707416_170707698_170707796_170708141_170708261_170708483_170708611_170712635
transcript_51210.known	chr2	-	1003	3	FSM	ENSMUSG00000075277.6	ENSMUST00000152462.3	1003	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGACCCTTCGGAGAGCG	8901	False	NA	NA	False	AATAAA	-23	NA	74593240	74580216	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_74580988_74581872_74581987_74593122
transcript_51212.known	chr2	+	2950	10	FSM	ENSMUSG00000027099.10	ENSMUST00000028511.8	2950	10	0	0	0	0	multi-exon	FALSE	canonical	3	767	junction_7	57.1160827926797	360	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAATCGTAGAAAATAGAGA	NA	False	NA	NA	False	AATAAA	-22	NA	74656146	74708775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_74656388_74677581_74677630_74678642_74678690_74689748_74689822_74697214_74697292_74698663_74698757_74699226_74699266_74699647_74699774_74700751_74700829_74706646
transcript_51218.nnic	chr2	-	747	2	Genic_Genomic	ENSMUSG00000081406.5	novel	750	1	NA	NA	-35	77	multi-exon	FALSE	canonical	0	0	junction_1	0	802	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGTCAAATGGCACAACAA	NA	False	NA	NA	False	NA	NA	NA	75022201	75021339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr2_-_75021913_75022027
transcript_5122.known	chr1	-	336	1	FSM	ENSMUSG00000089838.2	ENSMUST00000159266.2	336	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	205	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTTAGTTAAGATCTGTG	8626	False	NA	NA	False	AAGAAA	-29	NA	170753213	170752877	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_170752900_170753200
transcript_51221.known	chr2	-	750	1	FSM	ENSMUSG00000081406.5	ENSMUST00000118499.2	750	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	128407	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCTTTAAGAGCAACAAATA	NA	False	NA	NA	False	NA	NA	NA	75022166	75021416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_75021400_75022200
transcript_51222.known	chr2	+	483	1	FSM	ENSMUSG00000075276.6	ENSMUST00000122260.2	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	153	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTACACAAAGAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	75022620	75023103	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_75022600_75023100
transcript_51231.known	chr2	-	745	1	FSM	ENSMUSG00000082152.2	ENSMUST00000119695.2	745	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGAAAACTGTACAATCG	4092	False	NA	NA	False	NA	NA	NA	75463726	75462981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_75463000_75463700
transcript_51239.known	chr2	+	1654	11	FSM	ENSMUSG00000059005.14	ENSMUST00000111964.8	1654	11	0	0	0	0	multi-exon	FALSE	canonical	3	3912	junction_1	2045.95805431099	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGAGTTAACACGTGAA	7475	False	NA	NA	False	NA	NA	NA	75489604	75496183	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741
transcript_51244.known	chr2	+	5150	11	FSM	ENSMUSG00000059005.14	ENSMUST00000111962.8	5150	11	0	0	0	0	multi-exon	FALSE	canonical	3	3726	junction_1	2097.55310779012	1448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGTTTTATCATTTTG	7481	False	NA	3	True	ATTAAA	-18	NA	75489610	75499751	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_75489668_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741
transcript_51253.known	chr2	+	1140	10	FSM	ENSMUSG00000059005.14	ENSMUST00000090792.11	1140	10	0	0	0	0	multi-exon	FALSE	canonical	3	3912	junction_1	2101.42958982395	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAACAGAAACGGTAGG	7532	False	NA	-60	True	NA	NA	NA	75489661	75495630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577
transcript_51257.known	chr2	+	1074	10	FSM	ENSMUSG00000059005.14	ENSMUST00000164947.9	1074	10	0	0	0	0	multi-exon	FALSE	canonical	3	3726	junction_1	2155.72848103619	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAACAGAAACGGTAGG	7532	False	NA	-60	True	NA	NA	NA	75489661	75495630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_75489668_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577
transcript_5128.known	chr1	-	1462	7	FSM	ENSMUSG00000026656.16	ENSMUST00000081103.12	1462	7	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_6	22.7943706500823	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCTTTCTATTTACTTTT	NA	False	NA	NA	False	AGTAAA	-17	NA	170803696	170788126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_170788670_170788764_170788803_170793270_170793394_170794014_170794270_170795548_170795804_170797042_170797064_170803469
transcript_51313.known	chr2	+	1734	10	FSM	ENSMUSG00000059005.14	ENSMUST00000111961.8	1734	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_6	3663.85558909979	616	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTGGTTTTTGTGCAT	7494	False	NA	NA	False	AAAAAG	-13	NA	75489623	75496465	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75494016_75494059_75495371_75495495_75495577_75495646_75495741
transcript_51316.nnic	chr2	-	2280	5	NNC	ENSMUSG00000015839.7	novel	2475	5	NA	NA	508	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_4	215.843693445048	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGACTTTTTGAATTTA	NA	False	NA	1	True	AATAAA	-22	NA	75534325	75505856	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_75507529_75507888_75508057_75508831_75508922_75509506_75509774_75534242
transcript_51317.known	chr2	-	2475	5	FSM	ENSMUSG00000015839.7	ENSMUST00000102672.5	2475	5	0	0	0	0	multi-exon	FALSE	canonical	3	494	junction_1	38.2058568808501	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGACTTTTTGAATTTA	NA	False	NA	1	True	AATAAA	-22	NA	75534985	75505856	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_75507529_75507888_75508057_75508831_75508922_75509506_75509774_75534707
transcript_51318.nic	chr2	-	956	3	ISM	ENSMUSG00000015839.7	ENSMUST00000102672.5	2475	5	37	2617	37	-2617	5prime_fragment	FALSE	canonical	3	545	junction_1	28.5	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGCCTGTAAACTACAAG	NA	False	NA	NA	False	NA	NA	NA	75534948	75508473	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_75508922_75509506_75509774_75534707
transcript_5132.nic	chr1	-	1673	5	ISM	ENSMUSG00000026656.16	ENSMUST00000081103.12	1462	7	7434	0	-7063	0	3prime_fragment	FALSE	canonical	3	38	junction_2	18.6346451535842	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCTTTCTATTTACTTTT	NA	False	NA	NA	False	AGTAAA	-17	NA	170796262	170788126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_170788670_170788764_170788803_170793270_170793394_170794014_170794270_170795548
transcript_51320.known	chr2	-	1447	2	FSM	ENSMUSG00000015839.7	ENSMUST00000152371.2	1447	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTGGACATGATAAAATCT	NA	False	NA	NA	False	ATTAAA	-18	NA	75534833	75521395	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_75522717_75534707
transcript_51321.nnic	chr2	+	459	3	NNC	ENSMUSG00000086813.2	novel	1939	4	NA	NA	-45	-3208	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTTCTCTCTCTTCTTAG	NA	False	NA	NA	False	NA	NA	NA	75607486	75609442	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_75607585_75607994_75608131_75609217
transcript_51322.nic	chr2	+	405	3	ISM	ENSMUSG00000086813.2	ENSMUST00000135682.2	1939	4	-45	3208	-45	-3208	5prime_fragment	FALSE	canonical	1	2	junction_2	2	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTTCTCTCTCTTCTTAG	NA	False	NA	NA	False	NA	NA	NA	75607486	75609442	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_75607585_75607994_75608131_75609271
transcript_51323.known	chr2	-	2737	1	FSM	ENSMUSG00000075273.5	ENSMUST00000099996.5	2737	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGCGGTGTTTAGCGCC	NA	False	NA	NA	False	NA	NA	NA	75768929	75766192	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_75766200_75768900
transcript_5133.nnic	chr1	-	1550	4	NIC	ENSMUSG00000026656.16	novel	1462	7	NA	NA	-7063	0	combination_of_known_splicesites	FALSE	canonical	2	11	junction_2	31.5418593124896	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCTTTCTATTTACTTTT	NA	False	NA	NA	False	AGTAAA	-17	NA	170796262	170788126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_170788670_170788764_170788803_170794014_170794270_170795548
transcript_51330.known	chr2	-	655	4	FSM	ENSMUSG00000056436.5	ENSMUST00000028430.6	655	4	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_3	45.146674542232	2169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGCGTTATGTTTATGA	NA	False	NA	1	True	AATAAA	-30	NA	76190794	76184285	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_76184581_76186423_76186617_76187916_76187946_76190656
transcript_51331.known	chr2	+	1898	10	FSM	ENSMUSG00000042369.9	ENSMUST00000046389.5	1898	10	0	0	0	0	multi-exon	FALSE	canonical	3	321	junction_1	22.7991769398766	613	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATGACTTATTTATATGAA	NA	False	NA	55	True	AATAAA	-21	NA	76200327	76214112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_76200773_76202378_76202502_76203903_76204031_76205699_76205823_76206662_76206849_76208724_76208855_76209021_76209107_76209261_76209426_76210708_76210910_76213798
transcript_5134.nic	chr1	-	1030	3	ISM	ENSMUSG00000026656.16	ENSMUST00000159969.8	1578	10	12774	-211	-2143	0	3prime_fragment	FALSE	canonical	2	8	junction_2	23.5	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCTTTCTATTTACTTTT	NA	False	NA	NA	False	AGTAAA	-17	NA	170791342	170788126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_170788670_170788764_170788803_170790893
transcript_51340.known	chr2	+	593	2	FSM	ENSMUSG00000042359.19	ENSMUST00000133275.2	593	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCAACTTTGTTTTCCTCC	NA	False	NA	NA	False	ATTAAA	-18	NA	76236851	76238275	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_76237034_76237864
transcript_51341.known	chr2	+	422	2	FSM	ENSMUSG00000042359.19	ENSMUST00000134213.2	422	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCGGAGAACGAATGACAC	NA	False	NA	NA	False	NA	NA	NA	76236904	76237811	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_76237034_76237518
transcript_51345.known	chr2	-	1614	8	FSM	ENSMUSG00000002731.7	ENSMUST00000002808.7	1614	8	0	0	0	0	multi-exon	TRUE	canonical	3	32	junction_1	7.52953368748825	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTAGCTTTATTCTTTGT	NA	False	NA	35	True	NA	NA	NA	76478359	76460241	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_76460913_76463876_76464052_76467138_76467234_76469543_76469662_76470584_76470664_76473566_76473649_76477468_76477639_76478135
transcript_51348.nic	chr2	-	1116	6	ISM	ENSMUSG00000002731.7	ENSMUST00000002808.7	1614	8	-297	6846	-297	51	5prime_fragment	FALSE	canonical	3	42	junction_4	3.65513337649941	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCCCTTCATTTCTTGT	NA	False	NA	NA	False	AATAAA	-21	NA	76478656	76467087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_76467234_76469543_76469662_76470584_76470664_76473566_76473649_76477468_76477639_76478135
transcript_51352.nic	chr2	-	1048	5	NIC	ENSMUSG00000002732.15	novel	860	4	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	15.9118666409696	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTTTTGCAAATCTGACT	NA	False	NA	-13	True	AATAAA	-26	NA	76503486	76493387	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_76493697_76496020_76496155_76497670_76497787_76502040_76502193_76503149
transcript_51354.known	chr2	-	860	4	FSM	ENSMUSG00000002732.15	ENSMUST00000002809.14	860	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	10.2089285540757	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTTTTGCAAATCTGACT	NA	False	NA	-13	True	AATAAA	-26	NA	76503414	76493387	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_76493697_76496020_76496155_76502040_76502193_76503149
transcript_51355.known	chr2	-	418	2	FSM	ENSMUSG00000002732.15	ENSMUST00000154097.2	418	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGTGTATTAATGTAAAC	NA	False	NA	-32	True	AATAAA	-7	NA	76495587	76493406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_76493697_76495459
transcript_51358.known	chr2	+	2534	8	FSM	ENSMUSG00000002733.9	ENSMUST00000111920.2	2534	8	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_7	23.0465367711259	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTTATTTTGTTTATTG	6506	False	NA	6	True	ATTAAA	-19	NA	76505624	76527172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_76505979_76510506_76510624_76513073_76513230_76516962_76517100_76517625_76517791_76520788_76520833_76522992_76523109_76525727
transcript_51362.known	chr2	-	1464	8	FSM	ENSMUSG00000044033.17	ENSMUST00000131660.3	1464	8	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	5.99659767480439	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAGTTGCGCGAAGGC	NA	False	NA	NA	False	NA	NA	NA	77000954	76905104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_76905353_76919413_76919609_76938706_76938824_76954465_76954720_76958572_76958682_76962525_76962718_76998854_76998978_77000728
transcript_51369.known	chr2	-	631	3	FSM	ENSMUSG00000044033.17	ENSMUST00000111833.3	631	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	20	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTGATTTTGATGTTAAT	NA	False	NA	NA	False	AATAAA	-13	NA	77000920	76992324	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_76992641_76998854_76998978_77000728
transcript_5137.nnic	chr1	+	766	3	NNC	ENSMUSG00000104340.2	novel	1163	3	NA	NA	-3328	-2149	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	0.5	39	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGCAACTGTGTTTATAGC	NA	False	NA	NA	False	ATTAAA	-30	NA	170806184	170811886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_170806474_170811302_170811532_170811638
transcript_51370.known	chr2	-	8969	23	FSM	ENSMUSG00000044033.17	ENSMUST00000049544.14	8969	23	0	0	0	0	multi-exon	TRUE	canonical	3	17	junction_11	5.83396297270922	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGAGGACCTCAATCTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	77000979	76840245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_76845592_76850256_76850374_76853789_76853903_76857935_76858120_76859579_76859775_76860910_76861052_76869779_76869930_76871708_76871889_76872786_76872976_76875003_76875130_76875949_76876130_76879922_76880103_76884920_76885113_76888236_76888357_76889883_76890026_76905179_76905353_76919413_76919609_76938706_76938824_76954465_76954720_76958572_76958682_76962525_76962718_76998854_76998978_77000728
transcript_51373.nnic	chr2	-	424	2	Antisense	novelGene_ENSMUSG00000081611.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	15	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAGAGTCATTTCTGACC	7309	False	NA	NA	False	GATAAA	-1	NA	77139842	77117250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr2_-_77117450_77139617
transcript_51375.known	chr2	-	2642	8	FSM	ENSMUSG00000027016.18	ENSMUST00000111830.9	2642	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	1.29362644830535	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAATCTGCTGG	NA	False	NA	NA	False	AATAAA	-7	NA	77349962	77240977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_77242485_77244297_77244400_77244916_77245096_77246073_77246320_77280494_77280658_77307078_77307190_77333883_77334027_77349771
transcript_51377.known	chr2	-	3471	21	FSM	ENSMUSG00000027014.15	ENSMUST00000065889.10	3471	21	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_20	67.1203955590251	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCAGTGAGGTACTCTG	NA	False	NA	NA	False	AATAAA	-16	NA	77776719	77725996	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_77726923_77734139_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763108_77766936_77767067_77770645_77770707_77776493
transcript_51379.known	chr2	-	3388	20	FSM	ENSMUSG00000027014.15	ENSMUST00000111821.9	3388	20	0	0	0	0	multi-exon	TRUE	canonical	3	143	junction_19	43.213763581536	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCAGTGAGGTACTCTG	NA	False	NA	NA	False	AATAAA	-16	NA	77776697	77725996	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_77726923_77734139_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763108_77766936_77767067_77776493
transcript_51380.known	chr2	-	3255	20	FSM	ENSMUSG00000027014.15	ENSMUST00000111818.8	3255	20	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	52.4085273558816	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCATTGTCTTTTTTTCTA	NA	False	NA	NA	False	AATAAA	-19	NA	77776697	77726111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_77726923_77734157_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763108_77766936_77767067_77776493
transcript_51385.known	chr2	-	1877	6	FSM	ENSMUSG00000027014.15	ENSMUST00000127351.8	1877	6	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_5	73.5336657592969	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTAGGTGTTTTGTTCT	NA	False	NA	NA	False	NA	NA	NA	77776527	77756386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_77757681_77759599_77759843_77761778_77761890_77763042_77763108_77766936_77767067_77776493
transcript_51391.known	chr2	+	2249	6	FSM	ENSMUSG00000027011.15	ENSMUST00000028398.14	2249	6	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_4	9.66643677887566	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCGGTCCTAAGTATGGT	NA	False	NA	NA	False	AATAAA	-20	NA	78699390	78751637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_78699750_78700800_78701023_78702765_78702817_78744017_78744151_78749030_78749179_78750301
transcript_51394.known	chr2	+	1235	6	FSM	ENSMUSG00000027011.15	ENSMUST00000121433.2	1235	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	126.364551991451	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTATTTTGTGATGTAC	NA	False	NA	NA	False	TTTAAA	-37	NA	78700021	78750641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_78700363_78700800_78701023_78702765_78702817_78744017_78744151_78749030_78749179_78750301
transcript_51396.known	chr2	+	4042	23	FSM	ENSMUSG00000027006.14	ENSMUST00000028392.8	4042	23	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_19	21.5763108543292	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTCTTTTGAAGATGAT	NA	False	NA	12	True	AATAAA	-18	NA	80145809	80184387	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_80146150_80147592_80147944_80149503_80149667_80151587_80151639_80155003_80155087_80155338_80155471_80155961_80156056_80157001_80157080_80158415_80158460_80161612_80161751_80163272_80163363_80164069_80164184_80165796_80165912_80170816_80170945_80171155_80171273_80174260_80174363_80175267_80175424_80176855_80176990_80177687_80177742_80177991_80178140_80179612_80179733_80180972_80181078_80183202
transcript_51397.known	chr2	-	4469	31	FSM	ENSMUSG00000027002.14	ENSMUST00000028386.12	4469	31	0	0	0	0	multi-exon	TRUE	canonical	3	653	junction_15	66.8594213422628	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTCTTTAAAATCTTTG	NA	False	NA	0	True	AATAAA	-25	NA	80411608	80330855	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_80331756_80332568_80332659_80336516_80336627_80337164_80337282_80339055_80339150_80343020_80343102_80343457_80343541_80348238_80348333_80349902_80350001_80350182_80350314_80350715_80350935_80353719_80353852_80354881_80355022_80355902_80356023_80358878_80359012_80360501_80360648_80363988_80364048_80365817_80365900_80368447_80368581_80370462_80370570_80370853_80370951_80371806_80371864_80375333_80375491_80378244_80378294_80379173_80379312_80383480_80383572_80383650_80383794_80384545_80384603_80385041_80385135_80400462_80400574_80411201
transcript_5142.nnic	chr1	+	615	3	NNC	ENSMUSG00000104340.2	novel	1163	3	NA	NA	-2197	-2149	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGCAACTGTGTTTATAGC	NA	False	NA	NA	False	ATTAAA	-30	NA	170807315	170811886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_170807454_170811302_170811532_170811638
transcript_51425.known	chr2	+	1632	4	FSM	ENSMUSG00000027001.11	ENSMUST00000028384.5	1632	4	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	4.10960933531265	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGCTTCAAGTGATTGT	NA	False	NA	NA	False	NA	NA	NA	80447388	80462005	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_80447951_80451537_80451585_80454551_80454705_80461135
transcript_51426.known	chr2	+	1993	4	FSM	ENSMUSG00000027001.11	ENSMUST00000151204.2	1993	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	40.1441845795323	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTAAGTACATACTGCAAA	NA	False	NA	NA	False	AATAAA	-15	NA	80447609	80462705	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_80447951_80451537_80451585_80454669_80454705_80461135
transcript_51427.known	chr2	+	1324	4	FSM	ENSMUSG00000027001.11	ENSMUST00000147290.8	1324	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	41.0446910899164	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTTTGTGGGGTTTTTTT	NA	False	NA	NA	False	TTTAAA	-19	NA	80447443	80462074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_80447629_80451537_80451585_80454551_80454705_80461135
transcript_51428.nic	chr2	+	579	4	NIC	ENSMUSG00000027001.11	novel	1324	4	NA	NA	-40	365	combination_of_known_junctions	FALSE	canonical	3	15	junction_2	40.7948798530186	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCCTTGTTATTTCAG	NA	False	NA	4	True	AATACA	-14	NA	80447529	80461533	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_80447629_80451537_80451585_80454669_80454705_80461135
transcript_51436.known	chr2	-	86	1	FSM	ENSMUSG00000106252.3	ENSMUST00000196622.3	86	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTAAATAAACTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	80459134	80459048	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_80459000_80459100
transcript_51437.known	chr2	+	1559	9	FSM	ENSMUSG00000026999.15	ENSMUST00000028382.13	1559	9	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_4	57.0169930810105	1198	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACATTTGTTTGGAAGGT	NA	False	NA	12	True	AATAAA	-21	NA	80469159	80489246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_80469277_80472968_80473140_80474495_80474624_80476752_80476808_80483197_80483340_80485136_80485207_80486292_80486422_80487532_80487698_80488664
transcript_51439.known	chr2	-	793	1	FSM	ENSMUSG00000081400.2	ENSMUST00000119790.2	793	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	775	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGTCTCTAGGAGACATG	NA	False	NA	NA	False	NA	NA	NA	83184293	83183500	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_83183500_83184300
transcript_51441.known	chr2	+	2111	10	FSM	ENSMUSG00000027091.15	ENSMUST00000081591.7	2111	10	0	0	0	0	multi-exon	FALSE	canonical	3	620	junction_6	95.2257875645245	5113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGGGCCTTTTTCTTTTA	NA	False	NA	28	True	AATAAA	-36	NA	83474778	83494966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_83475072_83483701_83483804_83487359_83487472_83488352_83488506_83488873_83488966_83490401_83490585_83491490_83491638_83491776_83491879_83492492_83492617_83494163
transcript_51442.known	chr2	+	755	4	FSM	ENSMUSG00000027091.15	ENSMUST00000130948.8	755	4	0	0	0	0	multi-exon	FALSE	canonical	3	844	junction_1	33.4697209761633	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCAGTTTCGATTTGTCTG	NA	False	NA	NA	False	AATAAA	-20	NA	83474824	83488646	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_83475072_83483701_83483804_83487359_83487472_83488352
transcript_5145.known	chr1	+	1256	5	FSM	ENSMUSG00000059089.5	ENSMUST00000078825.5	1256	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGTGCAGCAGCTTTTC	NA	False	NA	NA	False	AATAAA	-29	NA	170846488	170857330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_170846589_170847096_170847118_170847464_170847720_170853112_170853368_170856705
transcript_51450.nic	chr2	-	1363	9	NIC	ENSMUSG00000027082.16	novel	2027	10	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	91	junction_8	41.6863286941894	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTGACTGTCCCCCTT	NA	False	NA	-2	True	AATAAA	-19	NA	84307132	84263198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84307034
transcript_51453.known	chr2	-	3968	8	FSM	ENSMUSG00000027082.16	ENSMUST00000111711.8	3968	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	91.8119195498524	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCTTAAATCTATTTTT	NA	False	NA	NA	False	ATTAAA	-36	NA	84307092	84270483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_84273657_84274353_84274465_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84307034
transcript_51455.known	chr2	-	3614	8	FSM	ENSMUSG00000027082.16	ENSMUST00000111714.8	3614	8	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	78.6801844721492	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCTTAAATCTATTTTT	NA	False	NA	NA	False	ATTAAA	-36	NA	84307107	84270483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_84273270_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84307034
transcript_51457.known	chr2	-	1232	8	FSM	ENSMUSG00000027082.16	ENSMUST00000111722.8	1232	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	72.9078255087077	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTGACTGTCCCCCTT	NA	False	NA	-2	True	AATAAA	-19	NA	84304128	84263198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_84263529_84264585_84264766_84274353_84274465_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042
transcript_51458.known	chr2	-	1492	9	FSM	ENSMUSG00000027082.16	ENSMUST00000028487.10	1492	9	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_8	57.5972004527998	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAATCATGTTGACTGTCC	NA	False	NA	-7	True	AATAAA	-14	NA	84304518	84263203	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84304286
transcript_51459.known	chr2	-	5380	19	FSM	ENSMUSG00000034101.15	ENSMUST00000111691.2	5380	19	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_18	37.1560356827033	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGAGGTCTGTGTCA	NA	False	NA	-38	True	AATAAA	-16	NA	84481109	84431126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84442875_84442894_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84480749
transcript_51460.known	chr2	-	5294	18	FSM	ENSMUSG00000034101.15	ENSMUST00000111697.9	5294	18	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_2	44.1949127323348	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGGAGGTCTGTGTCATT	NA	False	NA	-36	True	AATAAA	-18	NA	84481084	84431124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_84433248_84433992_84434097_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84442875_84442894_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84480749
transcript_51461.known	chr2	-	4706	12	FSM	ENSMUSG00000034075.11	ENSMUST00000035840.6	4706	12	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_5	28.4648543626047	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTTGCTATTCCTTTGTT	NA	False	NA	NA	False	AATACA	-15	NA	84545524	84518313	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_84519789_84520193_84521054_84521469_84521583_84522229_84522354_84522676_84522810_84523692_84523785_84524658_84524762_84524913_84525087_84526586_84526745_84532676_84532799_84540661_84541817_84545326
transcript_51467.known	chr2	+	2059	5	FSM	ENSMUSG00000027080.7	ENSMUST00000102645.4	2059	5	0	0	0	0	multi-exon	FALSE	canonical	3	447	junction_3	24.2525771826418	1263	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGGCTGGAGTCTTCCCT	3357	False	NA	12	True	AATAAA	-21	NA	84508745	84518559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_84509006_84515534_84515792_84515946_84516044_84516534_84516630_84517209
transcript_51490.known	chr2	-	747	4	FSM	ENSMUSG00000076437.12	ENSMUST00000117299.10	747	4	0	0	0	0	multi-exon	FALSE	canonical	3	1785	junction_1	271.099407761966	25365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGTTTAAATTTTGTCTT	296	False	NA	-8	True	AATAAA	-25	NA	84501114	84499558	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_84499742_84500330_84500461_84500588_84500735_84500826
transcript_51491.known	chr2	-	654	4	FSM	ENSMUSG00000076437.12	ENSMUST00000102647.11	654	4	0	0	0	0	multi-exon	FALSE	canonical	3	329	junction_1	946.216677088287	4449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGAGCAAGTTTAAATTT	358	False	NA	-14	True	AATAAA	-19	NA	84501052	84499564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_84499742_84500355_84500461_84500588_84500735_84500826
transcript_51492.known	chr2	-	783	3	FSM	ENSMUSG00000076437.12	ENSMUST00000102646.4	783	3	0	0	0	0	multi-exon	FALSE	canonical	3	2216	junction_1	111	1032	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTACTTGTAGTTAAGGTT	369	False	NA	NA	False	AATAAA	-15	NA	84501041	84500038	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_84500461_84500588_84500735_84500826
transcript_51493.known	chr2	-	1977	8	FSM	ENSMUSG00000050043.17	ENSMUST00000053664.9	1977	8	0	0	0	0	multi-exon	FALSE	canonical	3	1517	junction_2	94.3986336808766	1640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGCCTTGCTGTTTTTCCT	5291	False	NA	-8	True	AATAAA	-16	NA	84508400	84501660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_84502877_84503367_84503498_84503597_84503664_84503843_84503951_84505748_84505826_84506088_84506203_84506440_84506502_84508194
transcript_51494.known	chr2	-	1926	7	FSM	ENSMUSG00000050043.17	ENSMUST00000111664.8	1926	7	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_5	582.842865235181	453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCCTTGCTGTTTTTCCTT	5229	False	NA	-7	True	AATAAA	-17	NA	84508462	84501659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_84502877_84503367_84503498_84503597_84503664_84503843_84503951_84505748_84505826_84506440_84506502_84508194
transcript_51495.known	chr2	-	1208	2	FSM	ENSMUSG00000027079.16	ENSMUST00000138231.2	1208	2	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_1	0	570	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGGTATGATTCTTTTT	NA	False	NA	-23	True	AATAAA	-15	NA	84557620	84553467	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_84554562_84557506
transcript_51496.known	chr2	-	1912	3	FSM	ENSMUSG00000027079.16	ENSMUST00000028475.9	1912	3	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_1	30.5	977	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTATGATTCTTTTTTT	NA	False	NA	-21	True	AATAAA	-17	NA	84557694	84553465	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_84554562_84555872_84556501_84557506
transcript_51497.nnic	chr2	-	623	2	NNC	ENSMUSG00000097187.2	novel	726	2	NA	NA	446	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACTCTCCTGCTTCCTGA	NA	False	NA	NA	False	AATAAA	-21	NA	84573553	84572512	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_84573045_84573462
transcript_51498.known	chr2	-	726	2	FSM	ENSMUSG00000097187.2	ENSMUST00000181711.2	726	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACTCTCCTGCTTCCTGA	NA	False	NA	NA	False	AATAAA	-21	NA	84573999	84572512	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_84573045_84573805
transcript_51499.known	chr2	-	1768	8	FSM	ENSMUSG00000023224.13	ENSMUST00000023994.10	1768	8	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_7	34.9080424626107	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGCAGACATTTTCTTCT	NA	False	NA	-26	True	AATAAA	-1	NA	84605748	84595730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_84596172_84597618_84597839_84600117_84600255_84600436_84600641_84601768_84601904_84603474_84603989_84605083_84605159_84605706
transcript_51500.nic	chr2	-	1940	7	ISM	ENSMUSG00000023224.13	ENSMUST00000023994.10	1768	8	376	0	100	0	3prime_fragment	FALSE	canonical	3	78	junction_3	14.4270194041905	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGCAGACATTTTCTTCT	NA	False	NA	-26	True	AATAAA	-1	NA	84605372	84595730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_84596172_84597618_84597839_84600117_84600255_84600436_84600641_84601768_84601904_84603474_84603989_84605083
transcript_51506.known	chr2	+	1560	4	FSM	ENSMUSG00000027078.15	ENSMUST00000102642.9	1560	4	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_3	17.1075032271418	359	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCCAGAAGTCGGACTTCA	NA	False	NA	NA	False	GATAAA	-13	NA	84629171	84640520	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_84629277_84633122_84633219_84636680_84636868_84639348
transcript_51508.known	chr2	-	1761	8	FSM	ENSMUSG00000027077.8	ENSMUST00000028471.6	1761	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	63.4909603078763	681	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGTGGCAGTTTGCC	NA	False	NA	-19	True	AATAAA	-19	NA	84652996	84641519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_84641884_84645634_84645787_84645950_84646066_84646227_84646384_84647321_84647368_84647467_84647601_84648619_84649255_84652836
transcript_51511.nic	chr2	-	968	5	ISM	ENSMUSG00000027077.8	ENSMUST00000028471.6	1761	8	5494	0	5494	0	intron_retention	FALSE	canonical	3	6	junction_4	55.2222781130949	788	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGTGGCAGTTTGCC	3263	False	NA	-19	True	AATAAA	-19	NA	84647502	84641519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_84641884_84645634_84645787_84645950_84646066_84646227_84646384_84647321
transcript_51524.known	chr2	+	690	3	FSM	ENSMUSG00000027076.11	ENSMUST00000028470.10	690	3	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_1	17.5	6695	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCAGTGTCTTTACTTGAGA	6417	False	NA	10	True	ATTAAA	-15	NA	84657340	84660557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_84657492_84657942_84658058_84660133
transcript_51526.nic	chr2	+	2421	15	NIC	ENSMUSG00000027075.17	novel	3089	15	NA	NA	-50	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	18.8209880674936	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGCTGGTGTGTATCTGT	NA	False	NA	12	True	AATAAA	-14	NA	84669688	84693925	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_84669850_84671182_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
transcript_51527.known	chr2	+	2539	15	FSM	ENSMUSG00000027075.17	ENSMUST00000028469.14	2539	15	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	14.9196829314671	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGTGTATCTGTGACTG	NA	False	NA	17	True	AATAAA	-19	NA	84669751	84693930	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_84670026_84671182_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
transcript_51528.known	chr2	+	2556	15	FSM	ENSMUSG00000027075.17	ENSMUST00000111624.8	2556	15	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	20.7551321413303	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGCTGGTGTGTATCTGT	307	False	NA	12	True	AATAAA	-14	NA	84670542	84693925	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_84670839_84671182_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
transcript_51532.known	chr2	+	2487	14	FSM	ENSMUSG00000027075.17	ENSMUST00000111625.2	2487	14	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_5	11.2969598465759	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGTGACTGGAGGAGTA	733	False	NA	25	True	AATAAA	-27	NA	84670968	84693938	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
transcript_51533.nic	chr2	+	2448	13	NIC	ENSMUSG00000027074.15	novel	2621	6	NA	NA	15	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	9.67923034130297	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTGCTTCTACCTCTTTG	NA	False	NA	9	True	AATAAA	-20	NA	84766937	84788853	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_84766989_84767866_84768214_84768566_84768697_84771324_84771372_84774585_84774663_84774861_84774955_84777183_84777324_84778678_84778777_84780316_84780536_84780764_84780885_84785774_84785962_84786615_84786731_84788029
transcript_51535.known	chr2	+	2583	13	FSM	ENSMUSG00000027074.15	ENSMUST00000090726.6	2583	13	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_9	6.42693982821961	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTGCTTCTACCTCTTTG	NA	False	NA	9	True	AATAAA	-20	NA	84767007	84788853	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_84767194_84767866_84768214_84768566_84768697_84771324_84771372_84774585_84774663_84774861_84774955_84777183_84777324_84778678_84778777_84780316_84780536_84780764_84780885_84785774_84785962_84786615_84786731_84788029
transcript_51545.nic	chr2	+	909	4	ISM	ENSMUSG00000027074.15	ENSMUST00000090726.6	2583	13	-45	17328	2	2851	5prime_fragment	FALSE	canonical	3	24	junction_1	7.58653778449403	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCTCCTGTGGGGTTTTT	NA	False	NA	NA	False	ATTAAA	-2	NA	84766962	84771525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_84767194_84767866_84768214_84768566_84768697_84771324
transcript_51546.nic	chr2	+	1045	4	ISM	ENSMUSG00000027074.15	ENSMUST00000090726.6	2583	13	-45	17192	2	2987	5prime_fragment	FALSE	canonical	3	24	junction_1	7.58653778449403	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTGCCTGGTTTCCTTTC	NA	False	NA	NA	False	TATAAA	-16	NA	84766962	84771661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_84767194_84767866_84768214_84768566_84768697_84771324
transcript_5155.known	chr1	-	1298	3	FSM	ENSMUSG00000059498.14	ENSMUST00000168817.2	1298	3	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_2	7.5	923	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGATCTCCTTTTGGTGAC	NA	False	NA	-7	True	AATAAA	-24	NA	170885623	170878742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_170879422_170881507_170881763_170885259
transcript_51552.known	chr2	+	2739	17	FSM	ENSMUSG00000027067.17	ENSMUST00000077798.13	2739	17	0	0	0	0	multi-exon	FALSE	canonical	3	1260	junction_7	140.688874382447	1500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGTCCTTATGTCTCCTT	NA	False	NA	23	True	AATAAA	-19	NA	84867577	84877453	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
transcript_51555.known	chr2	+	2721	17	FSM	ENSMUSG00000027067.17	ENSMUST00000168266.8	2721	17	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_1	374.603436149483	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGATGTCCTTATGTCTC	NA	False	NA	20	True	AATAAA	-16	NA	84867794	84877450	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_84867875_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
transcript_51564.known	chr2	+	2069	15	FSM	ENSMUSG00000027067.17	ENSMUST00000130729.3	2069	15	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_1	394.014295814406	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAGTGTTGGGAACAAAAC	NA	False	NA	NA	False	NA	NA	NA	84867798	84876116	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_84867875_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027
transcript_51571.known	chr2	-	1812	12	FSM	ENSMUSG00000027071.15	ENSMUST00000028465.14	1812	12	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_11	6.62452243717697	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTAGGTGTCTACTCTT	NA	False	NA	NA	False	AATGAA	-1	NA	84865831	84828926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_84829471_84829949_84830028_84830667_84830734_84831000_84831095_84852072_84852210_84852691_84852834_84853497_84853576_84853826_84853921_84854453_84854518_84854725_84854798_84855199_84855336_84865524
transcript_5158.known	chr1	+	793	6	FSM	ENSMUSG00000026649.15	ENSMUST00000151340.8	793	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.40908153700972	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTAGGTCCTAGTCTAGCT	NA	False	NA	NA	False	NA	NA	NA	170941557	170954348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_170941666_170950614_170950763_170952602_170952666_170952838_170952920_170953602_170953780_170954132
transcript_51585.known	chr2	-	688	2	FSM	ENSMUSG00000027071.15	ENSMUST00000127839.2	688	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAGGTACAAATGGGGAAC	NA	False	NA	NA	False	NA	NA	NA	84863538	84862397	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_84862892_84863344
transcript_51586.nic	chr2	+	2760	7	ISM	ENSMUSG00000033955.14	ENSMUST00000048400.4	4799	8	4429	10	1624	0	3prime_fragment	FALSE	canonical	3	230	junction_4	19.0613046073277	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGGGGTTGTCCAGGATT	NA	False	NA	2	True	AATAAA	-11	NA	84892931	84903382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_84894361_84900331_84900702_84900950_84901102_84901216_84901354_84902049_84902208_84902439_84902513_84902940
transcript_51589.nic	chr2	-	1981	4	NIC	ENSMUSG00000025839.4	novel	1861	3	NA	NA	-98	0	combination_of_known_junctions	FALSE	canonical	3	5	junction_3	11.1455023315337	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTATTTATTTATTTAT	NA	False	NA	-7	True	AATAAA	-16	NA	87327535	87319430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_87320426_87321167_87321750_87322478_87322538_87327190
transcript_5159.known	chr1	+	766	5	FSM	ENSMUSG00000026649.15	ENSMUST00000129651.8	766	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.20565096031518	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTTAGAGACTGACCGAA	NA	False	NA	NA	False	NA	NA	NA	170941486	170954398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_170941666_170952602_170952666_170952838_170952920_170953602_170953780_170954132
transcript_51590.nic	chr2	-	2237	4	NIC	ENSMUSG00000025839.4	novel	1861	3	NA	NA	-103	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_3	7.40870359029762	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTATTTATTTATTTAT	NA	False	NA	-7	True	AATAAA	-16	NA	87327540	87319430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_87320426_87321167_87321750_87322478_87322789_87327190
transcript_51592.known	chr2	-	1861	3	FSM	ENSMUSG00000025839.4	ENSMUST00000026957.4	1861	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	1.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTATTTATTTATTTAT	NA	False	NA	-7	True	AATAAA	-16	NA	87322762	87319430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_87320426_87321167_87321750_87322478
transcript_51593.nic	chr2	+	1752	5	NIC	ENSMUSG00000025838.13	novel	644	4	NA	NA	-49	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	2.06155281280883	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACCAGTGCATCTCCATC	NA	False	NA	NA	False	NA	NA	NA	87336859	87341216	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_87336974_87337417_87337482_87338774_87339089_87339524_87340113_87340544
transcript_51597.nnic	chr2	+	754	3	Genic_Genomic	ENSMUSG00000082908.5	novel	253	1	NA	NA	-10138	368	multi-exon	FALSE	canonical	2	4	junction_1	65.5	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAGTCTA	NA	False	NA	NA	False	AATAAA	-30	NA	87346350	87357109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr2_+_87346418_87356339_87356560_87356642
transcript_51601.nnic	chr2	+	548	2	Genic_Genomic	ENSMUSG00000082908.5	novel	253	1	NA	NA	-135	227	multi-exon	FALSE	canonical	1	11	junction_1	0	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGATGTTGGGCAAATATA	NA	False	NA	NA	False	AATAAA	-27	NA	87356353	87356968	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr2_+_87356560_87356626
transcript_51602.nnic	chr2	+	689	2	Genic_Genomic	ENSMUSG00000082908.5	novel	253	1	NA	NA	-135	368	multi-exon	FALSE	canonical	1	11	junction_1	0	87	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAGTCTA	NA	False	NA	NA	False	AATAAA	-30	NA	87356353	87357109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr2_+_87356560_87356626
transcript_51605.known	chr2	+	5684	37	FSM	ENSMUSG00000051329.14	ENSMUST00000057481.7	5684	37	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	112.76240658795	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGTATATTAAGATTTAT	NA	False	NA	16	True	AATAAA	-18	NA	90507558	90566672	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_90507815_90509357_90509853_90510115_90510228_90514265_90514477_90515316_90515540_90517637_90517717_90519449_90519565_90520410_90520570_90523396_90523475_90524175_90524274_90526983_90527069_90528203_90528273_90530459_90530544_90530756_90530928_90532356_90532457_90532724_90532891_90533402_90533531_90534154_90534316_90537266_90537401_90538476_90538548_90539166_90539327_90540376_90540447_90542288_90542388_90544117_90544238_90547937_90548034_90548157_90548253_90548342_90548440_90548531_90548638_90551533_90551695_90552373_90552435_90553680_90553792_90553955_90554080_90555945_90556048_90560022_90560165_90563124_90563251_90563449_90563555_90565758
transcript_51614.nic	chr2	+	1523	9	ISM	ENSMUSG00000051329.14	ENSMUST00000057481.7	5684	37	2156	42089	2156	0	internal_fragment	FALSE	canonical	3	521	junction_6	48.3806521245839	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATTGAATTAGTATGATTA	NA	False	NA	NA	False	AATAAA	-11	NA	90509714	90524583	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_90509853_90510115_90510228_90514265_90514477_90515316_90515540_90517637_90517717_90519449_90519565_90520410_90520570_90523396_90523475_90524175
transcript_51616.nic	chr2	+	627	3	ISM	ENSMUSG00000051329.14	ENSMUST00000057481.7	5684	37	2156	52030	2156	-8222	internal_fragment	FALSE	canonical	3	579	junction_2	41.5	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACAGAGTACTTGCCTAG	NA	False	NA	NA	False	ATTAAA	-17	NA	90509714	90514642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_90509853_90510115_90510228_90514265
transcript_51617.nic	chr2	+	799	3	ISM	ENSMUSG00000051329.14	ENSMUST00000057481.7	5684	37	2156	51858	2156	-8050	internal_fragment	FALSE	canonical	3	579	junction_2	41.5	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTTTTTTCTTTCAGAA	NA	False	NA	NA	False	GATAAA	-1	NA	90509714	90514814	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_90509853_90510115_90510228_90514265
transcript_51618.known	chr2	+	4691	17	FSM	ENSMUSG00000008200.16	ENSMUST00000238890.2	4691	17	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_11	64.7446909020346	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTGTCTTGATTAGCAG	NA	False	NA	18	True	AATAAA	-22	NA	90575713	90611365	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_90576171_90577039_90577133_90581411_90581549_90581775_90581963_90583162_90583311_90583413_90583535_90587679_90588031_90588637_90588849_90593764_90593890_90596173_90596279_90597751_90597886_90598859_90599045_90606248_90606566_90606674_90606820_90607908_90608265_90609542_90609701_90609904
transcript_51621.known	chr2	-	348	1	FSM	ENSMUSG00000080873.4	ENSMUST00000117928.2	348	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGAAAGTTTTCCTTTAA	2288	False	NA	NA	False	NA	NA	NA	90578307	90577959	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_90578000_90578300
transcript_51622.known	chr2	-	317	1	FSM	ENSMUSG00000080977.2	ENSMUST00000118431.2	317	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCACTGCCTTATTTATT	1949	False	NA	NA	False	AAAAAG	-15	NA	90634920	90634603	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_90634600_90634900
transcript_51632.known	chr2	+	1066	12	FSM	ENSMUSG00000027282.18	ENSMUST00000111468.10	1066	12	0	0	0	0	multi-exon	FALSE	canonical	3	420	junction_1	628.312668913619	635	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGGTGATTGGTGTCTGC	119	False	NA	48	True	NA	NA	NA	90677521	90695732	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_90677730_90679941_90680049_90683183_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
transcript_51644.known	chr2	+	2281	12	FSM	ENSMUSG00000027282.18	ENSMUST00000111467.4	2281	12	0	0	0	0	multi-exon	FALSE	canonical	3	421	junction_3	644.761587047671	1095	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCATGCTTAGCCTGCTGC	214	False	NA	7	True	NA	NA	NA	90677616	90696984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_90677730_90679714_90679800_90679941_90680049_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
transcript_51645.known	chr2	+	1047	13	FSM	ENSMUSG00000027282.18	ENSMUST00000057216.15	1047	13	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	948.923465330875	763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTGATTGGTGTCTGCCTT	228	False	NA	51	True	NA	NA	NA	90677630	90695735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_90677708_90679714_90679800_90679941_90680049_90683159_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
transcript_51646.known	chr2	+	2377	13	FSM	ENSMUSG00000027282.18	ENSMUST00000150232.8	2377	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	734.005274542054	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCATGCTTAGCCTGCTGC	172	False	NA	7	True	NA	NA	NA	90677574	90696984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_90677730_90679714_90679800_90679941_90680049_90683183_90683211_90683367_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
transcript_51649.known	chr2	+	2343	4	FSM	ENSMUSG00000005505.13	ENSMUST00000111464.8	2343	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	29.2726645334669	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTCTGTGTTGACT	2335	False	NA	NA	False	AATAAA	-42	NA	90735083	90740905	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_90735157_90736009_90736628_90737888_90737996_90739360
transcript_51653.known	chr2	+	2437	4	FSM	ENSMUSG00000005505.13	ENSMUST00000090682.4	2437	4	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	4.10960933531265	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTCTGTGTTGACT	2338	False	NA	NA	False	AATAAA	-42	NA	90735086	90740905	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_90735254_90736009_90736628_90737888_90737996_90739360
transcript_51655.known	chr2	+	4830	15	FSM	ENSMUSG00000005506.17	ENSMUST00000005643.14	4830	15	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_2	185.405677653416	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGAACTGTTTGTCTTCT	2317	False	NA	8	True	ATTAAA	-8	NA	90770741	90849835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_90770987_90818009_90818162_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836964_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90846910
transcript_51657.known	chr2	+	7614	14	FSM	ENSMUSG00000005506.17	ENSMUST00000068747.14	7614	14	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_13	169.345415711454	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTGTCTTCTGCGTTGT	2463	False	NA	15	True	ATTAAA	-15	NA	90770887	90849842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_90770987_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836964_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90843835
transcript_51658.known	chr2	+	4678	14	FSM	ENSMUSG00000005506.17	ENSMUST00000111451.10	4678	14	0	0	0	0	multi-exon	FALSE	canonical	3	395	junction_7	113.564516501784	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGAACTGTTTGTCTTCT	2317	False	NA	8	True	ATTAAA	-8	NA	90770741	90849835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_90770987_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836964_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90846910
transcript_51666.nic	chr2	+	1075	7	ISM	ENSMUSG00000005506.17	ENSMUST00000068747.14	7614	14	-69	14425	16	3562	5prime_fragment	FALSE	canonical	3	481	junction_1	98.8399379468307	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAGAATTACCAGTATC	2394	False	NA	NA	False	ATTAAA	-19	NA	90770818	90835417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_90770987_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045
transcript_51670.known	chr2	+	1606	8	FSM	ENSMUSG00000002104.12	ENSMUST00000050323.6	1606	8	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_4	10.5791477608992	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTAGTGATTCTGACCCTT	NA	False	NA	7	True	AATAAA	-15	NA	90865985	90876074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_90866334_90866891_90867231_90872198_90872358_90873304_90873404_90873484_90873608_90874035_90874090_90875184_90875385_90875790
transcript_51673.known	chr2	+	1458	7	FSM	ENSMUSG00000002104.12	ENSMUST00000111446.10	1458	7	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	21.4683229174728	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGCTAGTGATTCTGACC	NA	False	NA	4	True	AATAAA	-12	NA	90865971	90876071	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_90866334_90866891_90867231_90873304_90873404_90873484_90873608_90874035_90874090_90875184_90875385_90875790
transcript_51676.known	chr2	+	686	5	FSM	ENSMUSG00000002104.12	ENSMUST00000128008.2	686	5	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	12.3364297914753	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCCGCCGCTCCTCCATG	NA	False	NA	NA	False	AAAACA	-22	NA	90873129	90875825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_90873404_90873484_90873608_90874035_90874090_90875184_90875385_90875790
transcript_51680.nic	chr2	+	918	2	ISM	ENSMUSG00000002104.12	ENSMUST00000111445.10	1450	6	-73	8707	-73	-8458	5prime_fragment	FALSE	canonical	3	58	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGCCAAAAGTTCTTTTG	NA	False	NA	NA	False	GATAAA	-16	NA	90865891	90867367	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_90866334_90866891
transcript_51686.known	chr2	-	2469	10	FSM	ENSMUSG00000002105.16	ENSMUST00000073575.12	2469	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_7	9.55684745788763	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTCTTCCACATACTAGG	4167	False	NA	0	True	AATAAA	-15	NA	90900762	90892135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_90893324_90893408_90893509_90893664_90893798_90894000_90894052_90895059_90895150_90895250_90895353_90895926_90896046_90896357_90896472_90898775_90899085_90900499
transcript_51687.known	chr2	-	1291	10	FSM	ENSMUSG00000002105.16	ENSMUST00000111436.3	1291	10	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_7	11.8831761976001	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAATGAGACTCCAGTCTG	4301	False	NA	NA	False	NA	NA	NA	90900628	90893218	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_90893324_90893408_90893509_90893664_90893798_90894000_90894052_90895059_90895150_90895250_90895353_90895926_90896085_90896357_90896472_90898775_90899085_90900499
transcript_51693.known	chr2	+	1636	12	FSM	ENSMUSG00000002102.16	ENSMUST00000067663.14	1636	12	0	0	0	0	multi-exon	FALSE	canonical	3	1724	junction_1	113.356309451931	7105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACAGTCTTTCTCAGCCT	NA	False	NA	18	True	AATAAA	-19	NA	90884353	90889777	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_90884677_90884919_90885004_90885323_90885450_90885802_90885908_90885992_90886056_90886249_90886388_90887002_90887147_90887256_90887406_90888109_90888207_90888354_90888501_90889390_90889473_90889598
transcript_51694.known	chr2	+	944	9	FSM	ENSMUSG00000002102.16	ENSMUST00000185715.7	944	9	0	0	0	0	multi-exon	FALSE	canonical	3	1724	junction_1	108.863374809896	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACACTCAAGTGAAGGTGA	NA	False	NA	NA	False	NA	NA	NA	90884622	90888190	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_90884677_90884919_90885004_90885323_90885450_90885802_90885908_90885992_90886056_90886249_90886388_90887002_90887147_90887256_90887406_90888109
transcript_51695.known	chr2	+	2034	5	FSM	ENSMUSG00000002111.9	ENSMUST00000002180.8	2034	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	7.28010988928052	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAAGTGTCTCATTCAAG	8617	False	NA	21	True	AGTAAA	-22	NA	90926440	90946101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_90927339_90929774_90929872_90943599_90943791_90944589_90944756_90945419
transcript_51698.known	chr2	-	1955	10	FSM	ENSMUSG00000002108.11	ENSMUST00000111356.8	1955	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_9	1.4229164972073	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCCTCTACCACTTCCT	NA	False	NA	NA	False	NA	NA	NA	91025380	91014405	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_91014828_91014999_91015095_91015286_91015401_91020529_91020630_91020806_91020987_91021083_91021293_91022133_91022401_91022904_91023088_91023961_91024042_91025075
transcript_51699.known	chr2	-	1802	10	FSM	ENSMUSG00000002108.11	ENSMUST00000002177.9	1802	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	1.4229164972073	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCCTCTACCACTTCCT	NA	False	NA	NA	False	NA	NA	NA	91025461	91014405	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_91014828_91014999_91015095_91015286_91015401_91020529_91020630_91020806_91020987_91021083_91021293_91022133_91022401_91022904_91023088_91023961_91024042_91025309
transcript_5170.known	chr1	-	1577	3	FSM	ENSMUSG00000038370.7	ENSMUST00000111332.2	1577	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTGGTTTGTGTGGGTAC	NA	False	NA	1	True	AATAAA	-33	NA	171023837	171000830	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_171002095_171003138_171003194_171023579
transcript_51700.known	chr2	-	1738	10	FSM	ENSMUSG00000002108.11	ENSMUST00000111354.2	1738	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_9	1.4229164972073	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGCAGGGTTCTTCAG	NA	False	NA	NA	False	AATAAA	-17	NA	91025496	91014436	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_91014828_91014999_91015095_91015286_91015401_91020529_91020630_91020806_91020987_91021083_91021293_91022133_91022401_91022904_91023088_91023961_91024042_91025377
transcript_51706.known	chr2	+	4652	11	FSM	ENSMUSG00000002103.17	ENSMUST00000239169.2	4652	11	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_7	11.5134703716994	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGGTAAAGACTTATTTC	5060	False	NA	7	True	NA	NA	NA	91033256	91044442	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_91033394_91033945_91034042_91034584_91034672_91036100_91036254_91036354_91036454_91036532_91036623_91037061_91037195_91038161_91038245_91038384_91038492_91038605_91038782_91040951
transcript_51711.known	chr2	+	3124	10	FSM	ENSMUSG00000002103.17	ENSMUST00000124131.2	3124	10	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_6	11.063230167017	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACCACTGTCTCCAAGATA	5072	False	NA	10	True	AATAAA	-24	NA	91033268	91042487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_91033394_91033945_91034042_91034584_91034672_91036100_91036254_91036354_91036454_91036532_91037195_91038161_91038245_91038384_91038492_91038605_91038782_91040951
transcript_51712.nnic	chr2	-	1801	10	NNC	ENSMUSG00000002109.15	novel	1557	10	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_5	30.5606056432779	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCAACAGGGTTTCTGAGT	3010	False	NA	-26	True	AATAAA	-35	NA	91067314	91041916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_91042358_91042624_91042671_91042794_91042960_91047010_91047154_91047397_91047549_91047651_91047752_91049088_91049235_91064452_91064645_91065159_91065297_91067034
transcript_51714.known	chr2	-	1557	10	FSM	ENSMUSG00000002109.15	ENSMUST00000028696.5	1557	10	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_8	17.7888854188351	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTAGGGTTGGAGCAGGG	2997	False	NA	NA	False	NA	NA	NA	91067327	91042200	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_91042358_91042624_91042671_91042794_91042960_91047010_91047154_91047397_91047576_91047651_91047752_91049088_91049235_91064452_91064645_91065159_91065297_91067034
transcript_51719.known	chr2	-	2228	9	FSM	ENSMUSG00000002109.15	ENSMUST00000111352.8	2228	9	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_7	15.7594217850783	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATCCTTTGTATCTAACTA	3094	False	NA	-57	True	AATAAA	-4	NA	91067230	91041947	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_91042358_91042624_91042671_91042794_91042960_91047010_91047154_91047397_91047576_91047651_91047752_91049088_91049235_91064452_91065297_91067034
transcript_51725.nic	chr2	-	2198	8	NIC	ENSMUSG00000002109.15	novel	2228	9	NA	NA	-10	0	intron_retention	FALSE	canonical	3	12	junction_6	30.9970373831212	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCAACAGGGTTTCTGAGT	3009	False	NA	-26	True	AATAAA	-35	NA	91067315	91041916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_91042358_91042624_91042671_91042794_91042960_91047010_91047154_91047397_91047576_91047651_91047752_91064452_91065297_91067034
transcript_51729.nic	chr2	-	1252	6	NIC	ENSMUSG00000002109.15	novel	1592	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_3	40.7892142606351	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCAACAGGGTTTCTGAGT	3019	False	NA	-26	True	AATAAA	-35	NA	91067305	91041916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_91042358_91042624_91042671_91042794_91042960_91064452_91064645_91065159_91065297_91067034
transcript_51730.known	chr2	-	1698	5	FSM	ENSMUSG00000002109.15	ENSMUST00000150427.8	1698	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	44.5785823013698	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACTAAAAACCCAAAAGCCC	3072	False	NA	-42	True	AATAAA	-19	NA	91067252	91041932	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_91042358_91042624_91042671_91042794_91042960_91064452_91065297_91067034
transcript_51731.known	chr2	+	1859	11	FSM	ENSMUSG00000027257.14	ENSMUST00000168916.8	1859	11	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	24.287651183266	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCGTCTTTTGATAGCC	4750	False	NA	20	True	AATAAA	-17	NA	91087157	91095024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_91087272_91090212_91090273_91090515_91090607_91090748_91090906_91091515_91091752_91091855_91092012_91093112_91093289_91093403_91093525_91093631_91093769_91094109_91094232_91094535
transcript_51732.known	chr2	+	1993	11	FSM	ENSMUSG00000027257.14	ENSMUST00000111349.9	1993	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	26.7037450557033	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCGTCTTTTGATAGCC	5266	False	NA	20	True	AATAAA	-17	NA	91087673	91095024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_91087922_91090212_91090273_91090515_91090607_91090748_91090906_91091515_91091752_91091855_91092012_91093112_91093289_91093403_91093525_91093631_91093769_91094109_91094232_91094535
transcript_51733.nic	chr2	+	1815	10	NIC	ENSMUSG00000027257.14	novel	1862	11	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_1	17.8519286920123	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGCGTCTTTTGATAGC	4733	False	NA	19	True	AATAAA	-16	NA	91087140	91095023	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_91087272_91090515_91090607_91090748_91090906_91091515_91091752_91091855_91092012_91093112_91093289_91093403_91093525_91093631_91093769_91094109_91094232_91094535
transcript_51737.known	chr2	-	2896	9	FSM	ENSMUSG00000040591.19	ENSMUST00000064652.14	2896	9	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_1	37.0082338811243	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGGAAACGACAAGGCTGG	NA	False	NA	NA	False	NA	NA	NA	91274967	91105412	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_91107480_91109534_91109599_91112090_91112201_91112809_91113006_91114579_91114666_91135093_91135179_91214073_91214205_91252210_91252314_91274913
transcript_51738.known	chr2	-	1977	9	FSM	ENSMUSG00000040591.19	ENSMUST00000102594.11	1977	9	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_5	19.7673974007708	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGACTGCCTGCTCCAAG	NA	False	NA	NA	False	AATAAA	-14	NA	91274987	91108174	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_91109303_91109534_91109599_91112090_91112201_91112809_91113006_91114579_91114666_91135093_91135179_91214073_91214205_91252210_91252314_91274913
transcript_51739.known	chr2	-	1498	8	FSM	ENSMUSG00000040591.19	ENSMUST00000094835.9	1498	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	33.6470273423908	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAATGAGTCTAAAGCCAG	NA	False	NA	-7	True	AATAAA	-18	NA	91275025	91108588	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_91109303_91109534_91109599_91112090_91112201_91112809_91113006_91114579_91114666_91135093_91135179_91214073_91214205_91274913
transcript_5174.nic	chr1	-	1509	10	NIC	ENSMUSG00000005674.10	novel	4712	10	NA	NA	3	-748	combination_of_known_junctions	FALSE	canonical	2	13	junction_9	36.8945778745768	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCCTGGTTTCTCCATT	9512	False	NA	92	True	AAAAAG	-13	NA	171050080	171046679	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_171047230_171047362_171047466_171047677_171047755_171047869_171047993_171048115_171048222_171048373_171048476_171048736_171048830_171049140_171049209_171049472_171049623_171049943
transcript_5175.known	chr1	-	4712	10	FSM	ENSMUSG00000005674.10	ENSMUST00000005817.9	4712	10	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_9	16.1314048434171	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGAGGCTAGATGTCAGT	9509	False	NA	NA	False	CATAAA	-16	NA	171050083	171043579	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_171047230_171047362_171047466_171047677_171047755_171047869_171047993_171048115_171048222_171048373_171048476_171048736_171048830_171049140_171049209_171049472_171049723_171049943
transcript_51755.known	chr2	-	463	4	FSM	ENSMUSG00000040591.19	ENSMUST00000141262.2	463	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	3.29983164553722	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTTTTTTGTTGTGTTAG	NA	False	NA	NA	False	ATTAAA	-19	NA	91275049	91249177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_91249264_91252210_91252314_91254906_91255045_91274913
transcript_51756.known	chr2	-	307	3	FSM	ENSMUSG00000040591.19	ENSMUST00000139490.8	307	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	64	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATTTTCTTTTTTCTTCTT	NA	False	NA	NA	False	AATAAA	-14	NA	91274982	91249128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_91249264_91252210_91252314_91274913
transcript_51758.known	chr2	+	3068	16	FSM	ENSMUSG00000027255.15	ENSMUST00000080008.13	3068	16	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_10	19.1619994317457	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCCTCTCCGTCCTGCCT	5502	False	NA	NA	False	AATAAA	-25	NA	91095318	91107276	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_91095750_91095916_91096036_91096570_91096644_91097469_91097602_91097680_91097762_91098501_91098584_91098796_91098854_91099796_91099850_91100277_91100415_91100502_91100635_91103885_91104015_91104097_91104233_91105139_91105267_91105417_91105512_91105620_91105740_91106109
transcript_51764.known	chr2	+	520	3	FSM	ENSMUSG00000027255.15	ENSMUST00000150701.8	520	3	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_2	6.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTAAAAGAAAAAAAAAAG	5852	False	NA	NA	False	NA	NA	NA	91095668	91096890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_91095750_91095916_91096036_91096570
transcript_51765.nic	chr2	+	1159	2	ISM	ENSMUSG00000027255.15	ENSMUST00000150701.8	520	3	-85	-19	-54	19	intron_retention	FALSE	canonical	3	274	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAATACAAACTGAACTAG	5767	False	NA	NA	False	NA	NA	NA	91095583	91096909	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_91095750_91095916
transcript_51767.known	chr2	+	6665	44	FSM	ENSMUSG00000040549.17	ENSMUST00000111338.10	6665	44	0	0	0	0	multi-exon	FALSE	canonical	3	508	junction_5	59.4884084586321	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCATTTCCCAAAATGCTC	NA	False	NA	11	True	AATAAA	-16	NA	91357106	91451009	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_91357196_91376666_91376761_91379118_91379313_91380896_91381104_91385611_91385784_91386844_91386978_91387919_91388021_91389393_91389508_91391151_91391257_91393098_91393189_91393293_91393459_91394664_91394794_91395965_91396149_91398481_91398596_91398981_91399093_91400524_91400618_91402692_91402879_91403317_91403413_91406360_91406419_91406507_91406634_91407908_91408049_91408379_91408555_91409767_91409882_91411454_91411584_91416066_91416262_91416582_91416719_91419013_91419103_91422010_91422137_91425027_91425178_91425655_91425860_91426032_91426169_91426706_91426901_91429550_91429724_91430985_91431160_91431350_91431472_91436590_91436771_91437789_91437978_91443084_91443161_91445317_91445507_91445586_91445725_91446138_91446223_91446645_91446806_91450032_91450185_91450326
transcript_51768.nic	chr2	+	2433	18	ISM	ENSMUSG00000040549.17	ENSMUST00000111338.10	6665	44	-19	47558	-19	7935	5prime_fragment	TRUE	canonical	3	508	junction_5	45.5637505405536	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCTGGTCTTGATTTGTT	NA	False	NA	NA	False	AATATA	-18	NA	91357087	91403451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_91357196_91376666_91376761_91379118_91379313_91380896_91381104_91385611_91385784_91386844_91386978_91387919_91388021_91389393_91389508_91391151_91391257_91393098_91393189_91393293_91393459_91394664_91394794_91395965_91396149_91398481_91398596_91398981_91399093_91400524_91400618_91402692_91402879_91403317
transcript_51772.known	chr2	+	2226	11	FSM	ENSMUSG00000040549.17	ENSMUST00000139433.8	2226	11	0	0	0	0	multi-exon	FALSE	canonical	3	508	junction_4	50.2661914212724	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACTAAAAAAACAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	91376664	91395513	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_91376761_91379118_91379313_91380896_91381104_91385611_91385784_91386844_91386978_91387919_91388021_91389393_91389508_91391151_91391257_91393098_91393189_91393293_91393459_91394664
transcript_51773.known	chr2	+	696	5	FSM	ENSMUSG00000040549.17	ENSMUST00000123253.8	696	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	250.268855433512	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTGCTATAGAGATTTAT	NA	False	NA	NA	False	NA	NA	NA	91357322	91385709	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_91357426_91376666_91376761_91379118_91379313_91380896_91381104_91385611
transcript_51774.known	chr2	-	1988	14	FSM	ENSMUSG00000027249.16	ENSMUST00000028681.15	1988	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	5.12333101702976	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTCAGTGTGCCCAATGC	NA	False	NA	NA	False	AATAAA	-15	NA	91466759	91455664	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_91455919_91456046_91456118_91458666_91458849_91459004_91459179_91459495_91459664_91460294_91460422_91460497_91460612_91460853_91461172_91463320_91463458_91463535_91463642_91465243_91465295_91465515_91465541_91466122_91466287_91466662
transcript_51778.nic	chr2	-	1072	2	ISM	ENSMUSG00000075040.10	ENSMUST00000099714.10	3469	5	-11	4772	1	-425	5prime_fragment	FALSE	canonical	3	3	junction_1	0	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	91480135	91478785	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_91479771_91480048
transcript_51781.known	chr2	+	2866	14	FSM	ENSMUSG00000027247.17	ENSMUST00000090614.11	2866	14	0	0	0	0	multi-exon	TRUE	canonical	3	46	junction_2	93.668116113923	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTGGCTGTTTAGGAAG	NA	False	NA	NA	False	AATAAA	-19	NA	91480566	91502671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_91480598_91482108_91482169_91484390_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
transcript_51784.known	chr2	+	3201	14	FSM	ENSMUSG00000027247.17	ENSMUST00000111329.8	3201	14	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_1	49.9501526672271	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTGGCTGTTTAGGAAG	NA	False	NA	NA	False	AATAAA	-19	NA	91480204	91502671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_91480598_91482108_91482169_91484417_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
transcript_51786.known	chr2	+	2883	13	FSM	ENSMUSG00000027247.17	ENSMUST00000111331.9	2883	13	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	81.5357368819887	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTGGCTGTTTAGGAAG	NA	False	NA	NA	False	AATAAA	-19	NA	91480462	91502671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_91480598_91484417_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
transcript_5179.nic	chr1	-	1405	10	NIC	ENSMUSG00000005674.10	novel	4712	10	NA	NA	3	-852	combination_of_known_junctions	FALSE	canonical	2	13	junction_9	36.8945778745768	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTGTTATTTTTGTT	9512	False	NA	-12	True	AGTAAA	-41	NA	171050080	171046783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_171047230_171047362_171047466_171047677_171047755_171047869_171047993_171048115_171048222_171048373_171048476_171048736_171048830_171049140_171049209_171049472_171049623_171049943
transcript_51791.known	chr2	-	3604	17	FSM	ENSMUSG00000027244.15	ENSMUST00000028678.9	3604	17	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_7	76.9829526583646	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTCCTATTCCAAATGTC	NA	False	NA	-1	True	AATAAA	-19	NA	91540864	91504963	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_91506809_91509071_91509201_91509657_91509775_91510264_91510343_91510687_91510803_91511903_91512041_91512370_91512482_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91540591
transcript_51794.known	chr2	-	3551	16	FSM	ENSMUSG00000027244.15	ENSMUST00000076803.12	3551	16	0	0	0	0	multi-exon	TRUE	canonical	3	217	junction_4	20.2170445141937	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCCTATTCCAAATGTCT	NA	False	NA	0	True	AATAAA	-20	NA	91540921	91504962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_91506809_91509071_91509201_91509657_91509775_91510264_91510343_91510687_91510803_91511903_91512041_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91540591
transcript_51803.nic	chr2	-	3489	15	NIC	ENSMUSG00000027244.15	novel	3604	17	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_3	59.708176379208	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTCCTATTCCAAATGTC	NA	False	NA	-1	True	AATAAA	-19	NA	91540938	91504963	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_91506809_91509071_91509201_91509657_91509775_91510687_91510803_91511903_91512041_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91540591
transcript_51813.nic	chr2	+	1605	3	NIC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	-28	-525	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	34.5	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTTTGTTGTTTCAGTTG	3344	False	NA	NA	False	AAGAAA	-40	NA	91541168	91551365	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_91541321_91542424_91543211_91550698
transcript_51814.nic	chr2	+	2130	3	NIC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	34.5	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAAAAAGAACT	3344	False	NA	NA	False	NA	NA	NA	91541168	91551890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_91541321_91542424_91543211_91550698
transcript_51815.known	chr2	+	2308	3	FSM	ENSMUSG00000027243.9	ENSMUST00000090608.6	2308	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	26	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAAAAAGAACT	3442	False	NA	NA	False	NA	NA	NA	91541266	91551890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_91541597_91542424_91543211_91550698
transcript_51817.nic	chr2	+	1667	3	NIC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	0	-525	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	37.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTTTGTTGTTTCAGTTG	3372	False	NA	NA	False	AAGAAA	-40	NA	91541196	91551365	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_91541411_91542424_91543211_91550698
transcript_51818.nic	chr2	+	2192	3	NIC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	37.5	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAAAAAGAACT	3372	False	NA	NA	False	NA	NA	NA	91541196	91551890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_91541411_91542424_91543211_91550698
transcript_51819.known	chr2	+	372	2	FSM	ENSMUSG00000027243.9	ENSMUST00000128140.2	372	2	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATATACTTCTTAGTGGA	3372	False	NA	NA	False	NA	NA	NA	91541196	91542672	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_91541321_91542424
transcript_51820.nic	chr2	+	1397	7	ISM	ENSMUSG00000040506.17	ENSMUST00000124132.8	3332	8	-33	38250	11	-38250	5prime_fragment	FALSE	canonical	3	82	junction_5	10.2252411001186	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCATCCCCCGGAGCAGGC	NA	False	NA	NA	False	NA	NA	NA	91560493	91603064	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_91560725_91596791_91597046_91597401_91597461_91598034_91598219_91599259_91599433_91601255_91601323_91602635
transcript_51825.known	chr2	-	771	5	FSM	ENSMUSG00000027239.15	ENSMUST00000111309.8	771	5	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_4	1107.84859073792	1960	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAAGCCCCTTCCCAGTT	NA	False	NA	NA	False	AATAAA	-42	NA	91762033	91760149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91761971
transcript_51826.known	chr2	-	1054	5	FSM	ENSMUSG00000027239.15	ENSMUST00000028672.13	1054	5	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_4	1100.19691419309	780	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91762642	91760172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91762274
transcript_51834.known	chr2	-	773	5	FSM	ENSMUSG00000027239.15	ENSMUST00000069423.13	773	5	0	0	0	0	multi-exon	FALSE	canonical	3	1617	junction_4	477.436121381699	7176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91762125	91760172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91762038
transcript_51835.known	chr2	-	714	5	FSM	ENSMUSG00000027239.15	ENSMUST00000090602.6	714	5	0	0	0	0	multi-exon	FALSE	canonical	3	492	junction_4	939.630878324036	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTCACGCCCACACCAAG	NA	False	NA	NA	False	NA	NA	NA	91762044	91760310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91761878
transcript_51837.nnic	chr2	+	756	3	Antisense	novelGene_ENSMUSG00000040479.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	11	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGGCTTCTGAGGGTGT	NA	False	NA	NA	False	NA	NA	NA	91763039	91764861	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr2_+_91763296_91763761_91763814_91764413
transcript_51843.nnic	chr2	-	716	3	NNC	ENSMUSG00000087197.2	novel	1187	2	NA	NA	52576	1487	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCCAAGTTGACCTATCAC	NA	False	NA	NA	False	NA	NA	NA	91873811	91872230	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_91872297_91872579_91872768_91873349
transcript_51845.known	chr2	-	2377	15	FSM	ENSMUSG00000040434.17	ENSMUST00000176774.8	2377	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	41.8854731039636	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGAGTGTTTTGTCTGT	NA	False	NA	0	True	NA	NA	NA	92201331	92195390	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_92195841_92195971_92196168_92196263_92196414_92196662_92196942_92197360_92197522_92197613_92197770_92197883_92198010_92198098_92198212_92199612_92199718_92199834_92200007_92200204_92200329_92200521_92200605_92200907_92201009_92201083_92201239_92201325
transcript_51848.known	chr2	-	2291	14	FSM	ENSMUSG00000040434.17	ENSMUST00000090582.11	2291	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	42.5506311706155	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTTTCAATTTTTTTTA	NA	False	NA	-25	True	GGGGCT	-23	NA	92201378	92195415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_92195841_92195971_92196168_92196263_92196414_92196662_92196942_92197360_92197522_92197613_92197770_92197883_92198010_92198098_92198212_92199834_92200007_92200204_92200329_92200521_92200605_92200910_92201009_92201083_92201239_92201325
transcript_51852.known	chr2	+	1167	11	FSM	ENSMUSG00000027222.15	ENSMUST00000155891.8	1167	11	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	67.8416538713496	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCATGTGGCTCTGTGTCAT	NA	False	NA	20	True	AATAAA	-20	NA	92205020	92211561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_92205167_92206215_92206252_92206971_92207049_92207774_92207909_92208035_92208137_92208937_92209019_92209140_92209294_92209378_92209452_92209560_92209681_92210754_92210820_92211380
transcript_51863.known	chr2	+	1392	11	FSM	ENSMUSG00000027222.15	ENSMUST00000028650.9	1392	11	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_1	17.2869893272368	969	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGTGGCTCTGTGTCATC	NA	False	NA	21	True	AATAAA	-21	NA	92205650	92211562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_92206021_92206215_92206252_92206971_92207049_92207774_92207909_92208035_92208137_92208937_92209019_92209140_92209294_92209378_92209452_92209560_92209681_92210754_92210820_92211380
transcript_51864.known	chr2	-	3274	12	FSM	ENSMUSG00000027223.16	ENSMUST00000111279.9	3274	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_11	26.6470657991172	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCAGAGTGGGTGTATTTA	NA	False	NA	-6	True	ATTAAA	-18	NA	92223076	92214020	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_92214767_92215068_92215168_92215268_92215340_92215491_92215609_92215757_92215868_92216139_92216313_92216707_92216784_92216915_92217729_92217898_92217981_92219319_92219626_92221380_92221487_92222501
transcript_51865.known	chr2	+	1066	1	FSM	ENSMUSG00000044916.11	ENSMUST00000189714.2	1066	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTTGGCTCCATAGCTTG	NA	False	NA	NA	False	CATAAA	-18	NA	92212882	92213948	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_92212900_92213900
transcript_51866.known	chr2	-	3976	12	FSM	ENSMUSG00000068742.12	ENSMUST00000090559.12	3976	12	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_5	10.1019595513375	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTTGTGTAATCTATCT	NA	False	NA	NA	False	AGTAAA	-2	NA	92264388	92233990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_92236166_92241970_92242113_92242958_92243052_92243293_92243497_92243611_92243764_92243980_92244293_92246498_92246640_92252506_92252596_92253222_92253408_92254889_92255033_92257246_92257356_92264156
transcript_51867.known	chr2	-	2160	11	FSM	ENSMUSG00000068742.12	ENSMUST00000111278.2	2160	11	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_4	10.4446158378372	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAATGTAAA	NA	False	NA	NA	False	NA	NA	NA	92264381	92241604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_92242113_92242958_92243052_92243293_92243497_92243611_92243764_92243980_92244293_92246498_92246640_92252506_92252596_92253222_92253408_92254889_92255033_92257246_92257356_92264156
transcript_51868.known	chr2	-	2668	3	FSM	ENSMUSG00000049922.9	ENSMUST00000125276.2	2668	3	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_2	25.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAGATACAGCATGTTT	NA	False	NA	NA	False	AATAAA	-21	NA	92290883	92283111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_92285120_92289011_92289536_92290747
transcript_51869.known	chr2	-	3139	2	FSM	ENSMUSG00000049922.9	ENSMUST00000067631.7	3139	2	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	0	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGATACAGCATGTTTTAT	NA	False	NA	NA	False	AATAAA	-24	NA	92290139	92283108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_92285120_92289011
transcript_51872.nnic	chr2	+	2845	8	NIC	ENSMUSG00000068735.15	novel	2703	8	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	3	62	junction_2	86.7591082085498	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCGTGGTGTCCTGTTTT	NA	False	NA	18	True	NA	NA	NA	93017895	93032102	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_93018093_93027241_93027324_93027806_93028094_93028607_93028667_93028883_93028933_93029239_93029337_93029701_93029804_93030130
transcript_51873.known	chr2	+	2654	8	FSM	ENSMUSG00000068735.15	ENSMUST00000090554.11	2654	8	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_2	50.0424309757148	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACAATCTGCGTGGTGT	NA	False	NA	10	True	AAGAAA	-43	NA	93017928	93032094	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_93018093_93027241_93027324_93027956_93028094_93028607_93028667_93028883_93028933_93029239_93029337_93029701_93029804_93030130
transcript_51876.known	chr2	-	3751	10	FSM	ENSMUSG00000027217.14	ENSMUST00000111265.9	3751	10	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_2	5.53774924194538	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTTTCTCATTGGTTGT	NA	False	NA	-11	True	TATAAA	-16	NA	93164832	93032104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_93034768_93036044_93036129_93040138_93040322_93041168_93041268_93042162_93042238_93050363_93050559_93053056_93053130_93054841_93054924_93142291_93142373_93164616
transcript_51878.known	chr2	-	674	3	FSM	ENSMUSG00000027217.14	ENSMUST00000152141.2	674	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	26	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTGCCTGTGTGAGATT	NA	False	NA	NA	False	ATTAAA	-15	NA	93164850	93141607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_93141967_93142291_93142373_93164616
transcript_51879.known	chr2	-	809	3	FSM	ENSMUSG00000027217.14	ENSMUST00000181716.8	809	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	4.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTGCCTGTGTGAGATT	NA	False	NA	NA	False	ATTAAA	-15	NA	93142860	93141607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_93141967_93142291_93142373_93142491
transcript_51882.known	chr2	-	1824	10	FSM	ENSMUSG00000027215.14	ENSMUST00000028644.11	1824	10	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_8	1.4229164972073	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGTCTGAAGAGGCGGTA	NA	False	NA	NA	False	ATTAAA	-17	NA	93292847	93249455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_93250288_93250584_93250669_93250899_93251101_93252171_93252274_93260289_93260365_93260475_93260601_93264205_93264279_93267732_93267816_93273713_93273790_93292674
transcript_51883.known	chr2	-	1657	9	FSM	ENSMUSG00000027215.14	ENSMUST00000099696.8	1657	9	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_8	3.52668399491647	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGTCTGAAGAGGCGGTA	NA	False	NA	NA	False	ATTAAA	-17	NA	93292756	93249455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_93250288_93250584_93250669_93250899_93251101_93252171_93252274_93260289_93260365_93260475_93260601_93264205_93264279_93267732_93267816_93292674
transcript_51887.known	chr2	-	1683	10	FSM	ENSMUSG00000027215.14	ENSMUST00000116457.9	1683	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	3.62433476228891	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGATCCAGTCTGAAGAGG	NA	False	NA	NA	False	ATTAAA	-12	NA	93293291	93249460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_93250288_93250584_93250669_93250899_93251101_93252171_93252274_93260289_93260365_93260475_93260601_93264205_93264279_93267732_93267816_93273713_93273790_93293254
transcript_51889.nic	chr2	-	2933	15	NIC	ENSMUSG00000027198.17	novel	2871	14	NA	NA	-5	0	combination_of_known_junctions	TRUE	canonical	3	84	junction_13	124.260444885995	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTCTAGAATGCTGGT	NA	False	NA	-11	True	ATTAAA	-19	NA	93652903	93525975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_93526617_93533538_93533622_93534827_93534957_93537578_93537723_93560502_93560670_93569914_93570105_93592897_93593030_93621354_93621449_93625979_93626120_93628516_93628713_93636369_93636487_93642241_93642332_93643743_93644310_93651954_93652027_93652731
transcript_51890.known	chr2	-	2871	14	FSM	ENSMUSG00000027198.17	ENSMUST00000028623.13	2871	14	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_9	31.3157237855525	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTCTAGAATGCTGGT	NA	False	NA	-11	True	ATTAAA	-19	NA	93652913	93525975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_93526617_93533538_93533622_93534827_93534957_93537578_93537723_93560502_93560670_93569914_93570105_93592897_93593030_93621354_93621449_93625979_93626120_93628516_93628713_93636369_93636487_93642241_93642332_93643743_93644310_93652731
transcript_51895.known	chr2	-	3950	15	FSM	ENSMUSG00000040272.15	ENSMUST00000111246.8	3950	15	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_14	5.46230122694433	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAGTGTCATTGCTATGT	NA	False	NA	NA	False	NA	NA	NA	93680286	93663811	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_93666174_93666274_93666429_93666532_93666676_93668355_93668498_93668584_93668631_93669492_93669583_93670367_93670469_93671653_93671732_93672209_93672308_93672893_93672961_93673263_93673334_93674547_93674619_93676091_93676152_93678261_93678553_93680109
transcript_51904.known	chr2	-	2224	15	FSM	ENSMUSG00000075023.12	ENSMUST00000099690.4	2224	15	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_14	17.5243271145093	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCAGGCCTGCTTTATTTC	NA	False	NA	0	True	AATAAA	-23	NA	93699502	93685705	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_93686126_93687041_93687196_93687289_93687433_93688239_93688382_93688481_93688528_93689700_93689791_93691361_93691463_93691813_93691892_93692118_93692217_93693135_93693203_93693444_93693515_93694263_93694335_93694736_93694797_93696026_93696575_93699366
transcript_51905.nnic	chr2	-	2137	15	NNC	ENSMUSG00000075023.12	novel	2224	15	NA	NA	-46179	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	23.9396562810986	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCAGGCCTGCTTTATTT	NA	False	NA	-1	True	AATAAA	-22	NA	93745681	93685706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_93686126_93687041_93687196_93687289_93687433_93688239_93688382_93688481_93688528_93689700_93689791_93691361_93691463_93691813_93691892_93692118_93692217_93693135_93693203_93693444_93693515_93694263_93694335_93694736_93694797_93696026_93696575_93745631
transcript_51906.nnic	chr2	-	2420	15	NNC	ENSMUSG00000075023.12	novel	2224	15	NA	NA	-61441	0	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_14	11.1785143768512	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCAGGCCTGCTTTATTT	NA	False	NA	-1	True	AATAAA	-22	NA	93760943	93685706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_93686126_93687041_93687196_93687289_93687433_93688239_93688382_93688481_93688528_93689700_93689791_93691361_93691463_93691813_93691892_93692118_93692217_93693135_93693203_93693444_93693515_93694263_93694335_93694736_93694797_93696026_93696575_93760610
transcript_51910.nic	chr2	-	1454	11	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_10	43.1723291009415	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATGATTTGATCCAAAA	8795	False	NA	-7	True	ATTAAA	-20	NA	93841155	93810981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_93811323_93811860_93811960_93826527_93826738_93831769_93831859_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93840607_93840754_93841027
transcript_51913.known	chr2	-	1228	10	FSM	ENSMUSG00000040174.15	ENSMUST00000040005.13	1228	10	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_3	32.7210431781547	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATGATTTGATCCAAAA	8875	False	NA	-7	True	ATTAAA	-20	NA	93841075	93810981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_93811323_93811860_93811960_93826527_93826738_93831769_93831859_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93841027
transcript_51924.nic	chr2	-	1249	9	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_3	40.6799628195504	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATGATTTGATCCAAAA	8765	False	NA	-7	True	ATTAAA	-20	NA	93841185	93810981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_93811323_93811860_93811960_93826527_93826738_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93841027
transcript_51945.known	chr2	-	897	9	FSM	ENSMUSG00000040174.15	ENSMUST00000126378.8	897	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	52.8380485540486	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCATTGCTTCCCTCAGTT	8851	False	NA	NA	False	NA	NA	NA	93841099	93826591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_93826738_93831769_93831859_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838472_93838768_93838938_93840607_93840754_93841027
transcript_51948.known	chr2	-	1902	11	FSM	ENSMUSG00000027195.11	ENSMUST00000028619.5	1902	11	0	0	0	0	multi-exon	TRUE	canonical	3	670	junction_5	45.0653969249135	2124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTATTTTTGATAGTGGAA	NA	False	NA	NA	False	AATAAA	-31	NA	93988309	93863033	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_93864007_93864271_93864422_93874217_93874284_93875705_93875788_93882598_93882634_93895898_93895944_93896753_93896819_93913511_93913620_93945337_93945414_93947774_93947822_93988054
transcript_51949.known	chr2	-	1758	10	FSM	ENSMUSG00000027195.11	ENSMUST00000127084.8	1758	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	235.021879727436	747	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTGAAATGAAAGTGTATT	NA	False	NA	NA	False	AATAAA	-18	NA	93988254	93863046	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_93864007_93864271_93864422_93874217_93874284_93875705_93875788_93882598_93882634_93895898_93895944_93896753_93896819_93913511_93913620_93947774_93947822_93988054
transcript_5195.nnic	chr1	+	690	5	NNC	ENSMUSG00000005681.13	novel	518	4	NA	NA	-3289	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	60.9631035955356	238	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCATGCCTCTTGTGTCTT	NA	False	NA	11	True	AATAAA	-17	NA	171049333	171053942	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_171049548_171050883_171050916_171052855_171052936_171053234_171053368_171053711
transcript_51950.known	chr2	-	727	3	FSM	ENSMUSG00000027195.11	ENSMUST00000141955.2	727	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	338	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTAATTAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	93988238	93944920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_93945414_93947774_93947825_93988054
transcript_51951.known	chr2	-	4590	25	FSM	ENSMUSG00000027194.17	ENSMUST00000111238.8	4590	25	0	0	0	0	multi-exon	TRUE	canonical	3	116	junction_1	40.2833497103814	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCCGTGGTGTAGTTTTTC	NA	False	NA	-2	True	AATAAA	-21	NA	94237034	94131111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_94132213_94133889_94134034_94135288_94135409_94153433_94153518_94154706_94154867_94157042_94157164_94160862_94161017_94163137_94163398_94172971_94173143_94189095_94189283_94192684_94192910_94193044_94193123_94194610_94194777_94194918_94195035_94196866_94197014_94199657_94199771_94202081_94202243_94204862_94205003_94205426_94205572_94206374_94206485_94207945_94208078_94208338_94208451_94209033_94209204_94216436_94216527_94236851
transcript_51952.known	chr2	-	3408	20	FSM	ENSMUSG00000027194.17	ENSMUST00000094801.5	3408	20	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	34.6292592408193	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTTTTTAAATATAAAAAG	NA	False	NA	NA	False	NA	NA	NA	94237033	94158281	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_94158831_94160862_94161017_94163137_94163398_94172971_94173143_94189095_94189283_94192684_94192910_94193044_94193123_94194610_94194777_94194918_94195035_94196866_94197014_94199657_94199771_94202081_94202243_94204862_94205003_94205426_94205572_94206374_94206485_94207945_94208078_94208338_94208451_94209033_94209204_94216436_94216527_94236851
transcript_51957.known	chr2	-	597	1	FSM	ENSMUSG00000081476.2	ENSMUST00000117207.2	597	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCATGGGTAGGGGCTAGT	NA	False	NA	NA	False	GGGGCT	-13	NA	94215443	94214846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_94214800_94215400
transcript_51960.known	chr2	-	3736	14	FSM	ENSMUSG00000027193.13	ENSMUST00000028617.7	3736	14	0	0	0	0	multi-exon	FALSE	canonical	3	777	junction_1	163.356364354585	361	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAGATATTAGCATTTATT	NA	False	NA	44	True	NA	NA	NA	94268481	94242026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_94244127_94248600_94248738_94249215_94249293_94251330_94251388_94251777_94251872_94252641_94252824_94253756_94253847_94255318_94255424_94255935_94256143_94257277_94257430_94257856_94257923_94258390_94258485_94260023_94260186_94268268
transcript_51968.known	chr2	-	2273	7	FSM	ENSMUSG00000027165.17	ENSMUST00000111231.10	2273	7	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_5	14.4299072146089	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATACACTTCTCCTTATT	NA	False	NA	NA	False	NA	NA	NA	101459335	101391125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_101392700_101406356_101406497_101413865_101413933_101415588_101415661_101416656_101416815_101440868_101441021_101459225
transcript_51969.known	chr2	-	1458	2	FSM	ENSMUSG00000027165.17	ENSMUST00000177007.2	1458	2	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGGAAAATGGACTTTGA	NA	False	NA	NA	False	AATAAA	-28	NA	101459354	101439691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_101441021_101459225
transcript_51970.known	chr2	+	6169	8	FSM	ENSMUSG00000027164.9	ENSMUST00000004949.8	6169	8	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	13.2603444409969	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTGCTGGTTATGTAGAAT	NA	False	NA	NA	False	TATAAA	-14	NA	101508784	101532014	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_101508966_101511169_101511373_101514823_101515142_101518808_101518960_101520400_101520560_101521772_101521845_101524599_101524678_101527007
transcript_51975.nnic	chr2	+	619	3	NNC	ENSMUSG00000027164.9	novel	6169	8	NA	NA	-5	-3998	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	43	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTGAGTCATTGGAGTTA	NA	False	NA	NA	False	AATAAA	-21	NA	101508768	101512582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_101508966_101511169_101511373_101512363
transcript_51977.known	chr2	-	2290	9	FSM	ENSMUSG00000032841.16	ENSMUST00000043845.14	2290	9	0	0	0	0	multi-exon	TRUE	canonical	1	4	junction_4	1.6583123951777	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTTCATTTCCAGTGAG	977	False	NA	NA	False	AAAAAG	-30	NA	101628053	101546585	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_101547812_101559768_101559896_101564949_101565091_101571631_101571724_101577070_101577129_101588854_101588904_101601279_101601361_101602474_101602754_101627816
transcript_51980.nnic	chr2	+	1081	7	NNC	ENSMUSG00000027163.14	novel	1191	6	NA	NA	-24	-4	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_6	63.08900238728	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGATGCTGGTCGTGGT	NA	False	NA	25	True	AATAAA	-21	NA	101716567	101731987	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_101716665_101725479_101725606_101727384_101727525_101729212_101729248_101730213_101730318_101731272_101731439_101731574
transcript_51982.known	chr2	+	1191	6	FSM	ENSMUSG00000027163.14	ENSMUST00000028584.8	1191	6	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_2	9.72830920561225	733	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGCTGGTCGTGGTTCTT	NA	False	NA	29	True	AATAAA	-25	NA	101716597	101731991	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_101716665_101725479_101725606_101727384_101727525_101729212_101729248_101730213_101730318_101731272
transcript_51987.known	chr2	+	353	3	FSM	ENSMUSG00000027163.14	ENSMUST00000133576.2	353	3	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_2	14.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACTTTCAGAGTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	101716604	101727551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_101716665_101725479_101725606_101727384
transcript_51988.known	chr2	-	3833	6	FSM	ENSMUSG00000048058.18	ENSMUST00000058790.12	3833	6	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_4	7.56306816047562	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTCGTGTGAATGGTTCT	NA	False	NA	-2	True	AATAAA	-18	NA	102016730	101780547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_101783521_101785173_101785520_101888251_101888387_101900277_101900404_101943877_101944025_102016624
transcript_51989.known	chr2	-	3710	6	FSM	ENSMUSG00000048058.18	ENSMUST00000111222.2	3710	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	25.560907652116	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTCGTGTGAATGGTTCT	NA	False	NA	-2	True	AATAAA	-18	NA	102016703	101780547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_101783521_101785173_101785520_101888251_101888387_101900277_101900404_101943973_101944025_102016624
transcript_51990.known	chr2	-	5612	5	FSM	ENSMUSG00000027189.17	ENSMUST00000102573.8	5612	5	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_4	8.0156097709407	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTCTCTCAGAGTTGTTC	NA	False	NA	0	True	AATAAA	-19	NA	102231245	102130463	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_102134850_102177308_102177329_102187761_102188002_102211208_102211287_102230357
transcript_51996.known	chr2	-	2506	11	FSM	ENSMUSG00000010914.11	ENSMUST00000011058.9	2506	11	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_1	20.370567002418	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTGATATGACATGCAAAA	NA	False	NA	NA	False	AATAAA	-15	NA	102903858	102851419	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_102852615_102854509_102854575_102858620_102858780_102860622_102860682_102863507_102863656_102865559_102865735_102871387_102871487_102872538_102872739_102877065_102877167_102888841_102888923_102903634
transcript_52.known	ERCC-00108	+	1005	1	FSM	ERCC-00108A	DQ668365	1005	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2266	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1005	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00108_+_0_1000
transcript_5200.nnic	chr1	+	730	4	NNC	ENSMUSG00000005681.13	novel	518	4	NA	NA	-3361	0	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_1	24.4176620957499	919	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCATGCCTCTTGTGTCTT	NA	False	NA	11	True	AATAAA	-17	NA	171049261	171053942	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_171049548_171052855_171052936_171053234_171053368_171053711
transcript_52007.known	chr2	-	2078	5	FSM	ENSMUSG00000010914.11	ENSMUST00000111183.2	2078	5	0	0	0	0	multi-exon	FALSE	canonical	3	362	junction_1	7.44983221287567	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGCCCTGTCTGTTATCT	NA	False	NA	NA	False	AATAAA	-25	NA	102903807	102869963	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_102871487_102872538_102872739_102877065_102877167_102888841_102888923_102903634
transcript_52010.nic	chr2	-	486	2	ISM	ENSMUSG00000010914.11	ENSMUST00000111183.2	2078	5	-65	18711	-14	-18711	5prime_fragment	FALSE	canonical	3	381	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTTTCACTGTCACATAA	NA	False	NA	NA	False	AATAAA	-25	NA	102903872	102888674	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_102888923_102903634
transcript_52011.nnic	chr2	+	947	7	NNC	ENSMUSG00000010911.13	novel	919	7	NA	NA	-70	3	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_6	133.735331490556	172	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTGGAAATTTTCTTGA	4523	False	NA	22	True	AATAAA	-44	NA	102903949	102922986	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_102904187_102913299_102913401_102917457_102917507_102918905_102919024_102919747_102919884_102922093_102922223_102922809
transcript_52013.known	chr2	+	919	7	FSM	ENSMUSG00000010911.13	ENSMUST00000011055.7	919	7	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_6	40.9691618442729	2138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGAAATTTTCTTGATGT	4593	False	NA	25	True	AATAAA	-21	NA	102904019	102922989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_102904187_102913299_102913401_102917457_102917507_102918905_102919024_102919747_102919884_102922093_102922262_102922809
transcript_52032.known	chr2	+	837	6	FSM	ENSMUSG00000010911.13	ENSMUST00000124540.8	837	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	142.218704817615	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTTTTAAATGAGTTGGAA	4613	False	NA	12	True	AATAAA	-34	NA	102904039	102922976	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_102904187_102913299_102913401_102918905_102919024_102919747_102919884_102922093_102922262_102922809
transcript_52039.known	chr2	-	2613	13	FSM	ENSMUSG00000027187.11	ENSMUST00000028610.10	2613	13	0	0	0	0	multi-exon	FALSE	canonical	3	472	junction_10	47.7368364636321	204	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCTGACTTTGGAGGTTC	NA	False	NA	NA	False	NA	NA	NA	103315505	103284193	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_103285167_103285422_103285507_103287194_103287303_103290586_103290718_103293631_103293771_103297421_103297575_103298038_103298231_103300643_103300770_103302110_103302216_103303295_103303427_103304674_103304786_103307093_103307266_103315317
transcript_5204.known	chr1	+	492	4	FSM	ENSMUSG00000005681.13	ENSMUST00000005824.12	492	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	62.579726926715	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTCTTGTGTCTTTGGGT	1394	False	NA	16	True	AATAAA	-22	NA	171052650	171053947	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_171052691_171052852_171052936_171053234_171053368_171053711
transcript_52043.known	chr2	-	3879	29	FSM	ENSMUSG00000027185.16	ENSMUST00000028608.13	3879	29	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_25	29.5459474413003	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCCTGCAGTGCCTATAA	NA	False	NA	-9	True	AATAAA	-20	NA	103591615	103551600	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556108_103556464_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103564871_103565210_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
transcript_52046.nnic	chr2	-	1159	9	NNC	ENSMUSG00000027185.16	novel	705	6	NA	NA	-23	2651	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	113.506607737171	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTTTGTTGTTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	103591638	103577914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_103578034_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
transcript_52048.known	chr2	-	1639	4	FSM	ENSMUSG00000027185.16	ENSMUST00000127581.8	1639	4	0	0	0	0	multi-exon	FALSE	canonical	3	307	junction_1	12.4721912892465	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103591606	103583364	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_103584576_103587513_103587606_103588015_103588139_103591393
transcript_52049.known	chr2	-	6169	19	FSM	ENSMUSG00000027184.15	ENSMUST00000028607.13	6169	19	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_18	276.654863648277	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGCAGTGTTTAGAACAAAA	NA	False	NA	NA	False	AATAAA	-23	NA	103627994	103593285	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075_103627286_103627807
transcript_52052.known	chr2	-	4069	18	FSM	ENSMUSG00000027184.15	ENSMUST00000111147.8	4069	18	0	0	0	0	multi-exon	FALSE	canonical	3	1559	junction_1	126.714184008996	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTCATGTGTGGTTAT	NA	False	NA	-11	True	AATAAA	-17	NA	103627449	103595362	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
transcript_5206.known	chr1	-	674	5	FSM	ENSMUSG00000058715.12	ENSMUST00000079957.12	674	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.866025403784439	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTTTGTCATTTGTCAC	NA	False	NA	NA	False	AATAAA	-22	NA	171061934	171057140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_171057497_171057635_171057657_171058564_171058601_171058745_171058838_171061765
transcript_52061.nic	chr2	-	3498	17	ISM	ENSMUSG00000027184.15	ENSMUST00000111147.8	4069	18	24	2089	24	0	5prime_fragment	FALSE	canonical	3	1726	junction_3	108.266742354243	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATGAGTACTGGTGGAAT	NA	False	NA	-9	True	NA	NA	NA	103627425	103597451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
transcript_52065.known	chr2	-	391	4	FSM	ENSMUSG00000027184.15	ENSMUST00000155733.2	391	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	816.792643344822	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTGGAAACTATTTGGAG	NA	False	NA	27	True	AGTAAA	-29	NA	103627213	103613263	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_103613388_103613487_103613551_103618482_103618549_103627075
transcript_52066.known	chr2	-	828	3	FSM	ENSMUSG00000027184.15	ENSMUST00000145770.8	828	3	0	0	0	0	multi-exon	FALSE	canonical	3	1788	junction_1	55	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGATTTATTTATTTATT	NA	False	NA	NA	False	NA	NA	NA	103627318	103612865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_103613388_103613487_103613551_103627075
transcript_52068.known	chr2	-	1923	5	FSM	ENSMUSG00000027184.15	ENSMUST00000143349.8	1923	5	0	0	0	0	multi-exon	FALSE	canonical	3	1726	junction_3	119.813135757312	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATGAGTACTGGTGGAAT	2740	False	NA	-9	True	NA	NA	NA	103603126	103597451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013
transcript_52069.known	chr2	-	541	4	FSM	ENSMUSG00000086687.2	ENSMUST00000143559.2	541	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCGGATTCTTTTTCACT	NA	False	NA	NA	False	AATAAA	-16	NA	103640967	103634796	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_103635010_103636319_103636412_103636518_103636605_103640817
transcript_52076.known	chr2	+	3720	10	FSM	ENSMUSG00000027180.13	ENSMUST00000102565.4	3720	10	0	0	0	0	multi-exon	FALSE	canonical	3	344	junction_6	33.1058907144937	206	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTTATTTATTTATTT	NA	False	NA	14	True	NA	NA	NA	103858204	103887849	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_103858312_103860688_103860779_103863940_103864105_103873248_103873364_103876002_103876208_103878278_103878325_103880615_103880701_103881478_103881602_103883709_103883826_103885180
transcript_52078.known	chr2	+	555	5	FSM	ENSMUSG00000068686.13	ENSMUST00000111131.9	555	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	30.2933573576783	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAACAATAAAATTTGAGCC	NA	False	NA	NA	False	NA	NA	NA	103900193	103921505	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_103900265_103909202_103909282_103911341_103911444_103920473_103920620_103921348
transcript_52079.nnic	chr2	+	560	5	NNC	ENSMUSG00000068686.13	novel	555	5	NA	NA	43	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_4	29.2361078120874	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAACAATAAAATTTGAGCC	NA	False	NA	NA	False	NA	NA	NA	103900278	103921505	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_103900355_103909202_103909282_103911341_103911444_103920473_103920620_103921348
transcript_52080.known	chr2	+	434	4	FSM	ENSMUSG00000068686.13	ENSMUST00000129749.8	434	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	22.7596133534821	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTCATCCTGGATGCCCC	NA	False	NA	NA	False	NA	NA	NA	103900235	103914990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_103900265_103909202_103909282_103911341_103911444_103914766
transcript_52083.known	chr2	+	436	4	FSM	ENSMUSG00000068686.13	ENSMUST00000111132.8	436	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	23.6690139681023	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTAACTGTCTTGGCTACA	NA	False	NA	NA	False	NA	NA	NA	103900193	103921532	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_103900265_103909202_103909282_103911341_103911444_103921348
transcript_52085.nnic	chr2	+	441	4	NNC	ENSMUSG00000068686.13	novel	555	5	NA	NA	43	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	29.6348143611905	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTAACTGTCTTGGCTACA	NA	False	NA	NA	False	NA	NA	NA	103900278	103921532	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_103900355_103909202_103909282_103911341_103911444_103921348
transcript_52096.known	chr2	+	681	5	FSM	ENSMUSG00000032679.13	ENSMUST00000153312.2	681	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	94.0063162771524	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCATCTGTATTAATTTAG	NA	False	NA	-48	True	NA	NA	NA	103926184	103944608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_103926273_103928069_103928190_103934515_103934595_103941084_103941190_103944319
transcript_52108.known	chr2	+	1691	4	FSM	ENSMUSG00000032679.13	ENSMUST00000040423.12	1691	4	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	38.5082963644055	758	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGATTATCTTGACTCTCT	NA	False	NA	NA	False	ATTAAA	-20	NA	103926145	103945699	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_103926273_103934515_103934595_103941084_103941190_103944319
transcript_52117.nnic	chr2	+	829	5	Antisense	novelGene_ENSMUSG00000068373.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_3	3.89711431702997	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTTCTTGGTCATGATA	2914	False	NA	NA	False	NA	NA	NA	104030759	104053119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr2_+_104031169_104031298_104031363_104031614_104031755_104051497_104051618_104053023
transcript_52122.nnic	chr2	+	1005	3	Antisense	novelGene_ENSMUSG00000068373.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	9	junction_2	1.5	24	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATCCTGCATCCCTGCCTC	2975	False	NA	NA	False	NA	NA	NA	104030820	104032207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr2_+_104031169_104031298_104031363_104031614
transcript_5213.known	chr1	-	1623	13	FSM	ENSMUSG00000013593.13	ENSMUST00000013737.13	1623	13	0	0	0	0	multi-exon	FALSE	canonical	3	1142	junction_12	107.460457843804	8084	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTAATGTGTCTTTCTT	NA	False	NA	-1	True	ATTAAA	-28	NA	171074691	171062421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_171062657_171062841_171062900_171063925_171064010_171064174_171064271_171064708_171064839_171065513_171065634_171065855_171065942_171066083_171066162_171066278_171066467_171066842_171066964_171068515_171068707_171073659_171073767_171074562
transcript_5214.known	chr1	-	1545	12	FSM	ENSMUSG00000013593.13	ENSMUST00000111318.8	1545	12	0	0	0	0	multi-exon	FALSE	canonical	1	10	junction_7	412.075336127544	878	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTAATGTGTCTTTCTT	NA	False	NA	-1	True	ATTAAA	-28	NA	171074691	171062421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_171062657_171062841_171062900_171063925_171064010_171064174_171064271_171064708_171064839_171065513_171065634_171065855_171065942_171066278_171066467_171066842_171066964_171068515_171068707_171073659_171073767_171074562
transcript_5215.known	chr1	-	1845	12	FSM	ENSMUSG00000013593.13	ENSMUST00000136976.7	1845	12	0	0	0	0	multi-exon	FALSE	canonical	3	1142	junction_11	112.190068946623	527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTAATGTGTCTTTCTT	NA	False	NA	-1	True	ATTAAA	-28	NA	171074691	171062421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_171062657_171062841_171062900_171063925_171064010_171064174_171064271_171064708_171064839_171065513_171065942_171066083_171066162_171066278_171066467_171066842_171066964_171068515_171068707_171073659_171073767_171074562
transcript_52154.nnic	chr2	+	1520	4	NNC	ENSMUSG00000086454.8	novel	770	3	NA	NA	-41	93	at_least_one_novel_splicesite	FALSE	canonical	3	184	junction_1	171.663106759205	701	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389466	104399270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_104389830_104390068_104390321_104398205_104398836_104398995
transcript_52159.nnic	chr2	+	1426	4	NNC	ENSMUSG00000086454.8	novel	677	3	NA	NA	-21	93	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	219.022068903265	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389486	104399270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_104389756_104390068_104390321_104398205_104398836_104398995
transcript_52162.nnic	chr2	+	1478	3	NNC	ENSMUSG00000086454.8	novel	770	3	NA	NA	-41	-7110	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	77	107	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	104389466	104391285	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_104389830_104390068_104390321_104390422
transcript_52163.known	chr2	+	770	3	FSM	ENSMUSG00000086454.8	ENSMUST00000146553.8	770	3	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_1	196.5	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAACCTGTTCAGACATG	NA	False	NA	NA	False	NA	NA	NA	104389507	104398401	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_104389830_104390068_104390321_104398205
transcript_52166.known	chr2	+	677	3	FSM	ENSMUSG00000086454.8	ENSMUST00000136364.8	677	3	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	266	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAAGTGAACCTGTTCAGAC	NA	False	NA	NA	False	NA	NA	NA	104389523	104398398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_104389756_104390068_104390321_104398205
transcript_52169.known	chr2	+	582	4	FSM	ENSMUSG00000086454.8	ENSMUST00000125854.8	582	4	0	0	0	0	multi-exon	FALSE	canonical	2	29	junction_3	243.142390837596	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGGTGGTTCAAGCCTTT	NA	False	NA	NA	False	AATAAA	-21	NA	104389528	104401774	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_104389552_104390068_104390321_104398205_104398278_104401539
transcript_5217.known	chr1	-	1821	13	FSM	ENSMUSG00000062729.13	ENSMUST00000073120.11	1821	13	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_8	32.2076595444831	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTCTTTACTATTCAT	5189	False	NA	-15	True	AGTAAA	-16	NA	171108760	171104564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171105769_171106696_171106888_171107003_171107149_171107442_171107576_171107713_171107830_171107961_171108097_171108247_171108343_171108446
transcript_52170.known	chr2	+	536	3	FSM	ENSMUSG00000086454.8	ENSMUST00000127350.2	536	3	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	238	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATCAGCATGAAGAATTAG	NA	False	NA	NA	False	NA	NA	NA	104389536	104398474	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_104389552_104390068_104390321_104398205
transcript_52172.known	chr2	-	630	3	FSM	ENSMUSG00000027175.11	ENSMUST00000132600.2	630	3	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_2	0.5	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTTTTTAAAATAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	104542511	104535294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_104535547_104536700_104536888_104542320
transcript_52174.known	chr2	+	2817	21	FSM	ENSMUSG00000027176.9	ENSMUST00000028599.8	2817	21	0	0	0	0	multi-exon	TRUE	canonical	3	179	junction_7	45.0891062231222	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCCTGTTTCTTTGTATG	6900	False	NA	19	True	AATAAA	-20	NA	104420867	104495774	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_104421048_104439215_104439318_104439435_104439532_104474633_104474667_104475323_104475422_104476744_104476812_104476953_104476989_104477068_104477196_104478514_104478593_104479797_104479961_104481986_104482097_104482789_104482907_104483348_104483424_104484505_104484650_104486033_104486137_104489610_104489681_104490863_104491060_104493638_104493793_104494413_104494509_104494641_104494703_104495061
transcript_52175.known	chr2	+	2589	3	FSM	ENSMUSG00000027176.9	ENSMUST00000122900.2	2589	3	0	0	0	0	multi-exon	FALSE	canonical	3	327	junction_1	20.5	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCGGTATTTCATGGTGT	6909	False	NA	NA	False	AATAAA	-22	NA	104420876	104441751	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_104421048_104439215_104439318_104439435
transcript_52176.known	chr2	+	644	2	FSM	ENSMUSG00000027176.9	ENSMUST00000137961.2	644	2	0	0	0	0	multi-exon	FALSE	canonical	3	327	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGAGTGCTTTAGCCTTTT	6995	False	NA	4	True	ATTAAA	-16	NA	104420962	104439774	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_104421048_104439215
transcript_52179.known	chr2	-	1801	9	FSM	ENSMUSG00000027173.8	ENSMUST00000028595.8	1801	9	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_7	14.7394029729837	453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTACTCAGAATGGTGTG	NA	False	NA	-9	True	AATAAA	-24	NA	104573223	104552128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_104552464_104553220_104553300_104553383_104553510_104553652_104553796_104554914_104555127_104557466_104557657_104558427_104558556_104560528_104560920_104573026
transcript_52185.nnic	chr2	-	1217	7	NIC	ENSMUSG00000027173.8	novel	1801	9	NA	NA	65	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_6	54.5588367422425	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTACTCAGAATGGTGTG	NA	False	NA	-9	True	AATAAA	-24	NA	104573158	104552128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_104552464_104553220_104553300_104553383_104553510_104553652_104553796_104554914_104555127_104557466_104557657_104573026
transcript_52189.nic	chr2	-	2985	6	ISM	ENSMUSG00000074994.7	ENSMUST00000117237.2	8973	12	28188	15185	28188	-15185	internal_fragment	FALSE	canonical	3	39	junction_1	22.5920339943087	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGTTTTATTTTGTTGT	NA	False	NA	-5	True	AATAAA	-18	NA	104618853	104600324	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_104600526_104606516_104606735_104607663_104607798_104608481_104608599_104610279_104610606_104616864
transcript_52192.known	chr2	-	2872	6	FSM	ENSMUSG00000027171.11	ENSMUST00000028593.11	2872	6	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	3.61109401705356	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAAAACAAAAACGTAG	NA	False	NA	NA	False	NA	NA	NA	104680221	104661085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_104663156_104669666_104669800_104672399_104672449_104675334_104675499_104679420_104679546_104679890
transcript_52194.known	chr2	+	3944	18	FSM	ENSMUSG00000045106.13	ENSMUST00000111114.8	3944	18	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_15	13.2482289734989	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAAGGCTATTTTTCACT	NA	False	NA	NA	False	CATAAA	-21	NA	104716668	104830082	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_104716839_104737885_104738044_104745002_104745075_104757248_104757321_104759867_104759904_104761319_104761395_104775761_104775801_104781851_104781988_104782213_104782294_104803511_104803641_104804202_104804263_104805900_104806006_104811334_104811446_104815318_104815454_104820212_104820397_104821424_104822898_104824813_104824948_104829307
transcript_52203.nnic	chr2	+	843	5	NNC	ENSMUSG00000045106.13	novel	3944	18	NA	NA	-21	-22451	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	22.017038856304	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAAAGTAAAGGTAATT	NA	False	NA	NA	False	ATTAAA	-8	NA	104716647	104759461	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_104716839_104737885_104738044_104745002_104745075_104757248_104757321_104759111
transcript_52205.known	chr2	+	318	2	FSM	ENSMUSG00000045106.13	ENSMUST00000130611.2	318	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTCTTCCTTAATGATT	NA	False	NA	NA	False	NA	NA	NA	104847465	104848249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_104847549_104848014
transcript_52220.known	chr2	-	1283	11	FSM	ENSMUSG00000027170.13	ENSMUST00000028592.12	1283	11	0	0	0	0	multi-exon	FALSE	canonical	3	1722	junction_10	235.400531010446	6129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGACTAATCTAGCTAATT	2640	False	NA	-16	True	AGTAAA	-17	NA	104847425	104830000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_104830187_104830586_104830648_104831615_104831760_104835269_104835352_104836125_104836226_104837100_104837185_104843195_104843291_104843542_104843667_104844089_104844229_104845114_104845248_104847290
transcript_52243.known	chr2	-	645	1	FSM	ENSMUSG00000080859.2	ENSMUST00000119438.2	645	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	993	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTTCAATAGTTCTCTCC	NA	False	NA	NA	False	NA	NA	NA	105385190	105384545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_105384500_105385200
transcript_52244.known	chr2	+	538	2	FSM	ENSMUSG00000027168.22	ENSMUST00000153639.2	538	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCATTTCAAACCGTTGTGG	NA	False	NA	NA	False	TTTAAA	-6	NA	105505535	105506167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_105505995_105506088
transcript_52249.known	chr2	-	3048	10	FSM	ENSMUSG00000027167.12	ENSMUST00000122965.8	3048	10	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_4	20.3548762623191	329	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACCTTTCTCTTACCCTG	NA	False	NA	-4	True	AATAAA	-30	NA	105734909	105531371	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_105533207_105622560_105622668_105624861_105624971_105639610_105639800_105644610_105644696_105662475_105662616_105672576_105672706_105696303_105696426_105727246_105727283_105734613
transcript_52254.known	chr2	+	955	7	FSM	ENSMUSG00000042670.6	ENSMUST00000037499.6	955	7	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_1	38.970073988468	3155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGACTATCTCATATTTG	NA	False	NA	NA	False	TATAAA	-22	NA	105734982	105795903	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_105735076_105738668_105738775_105761063_105761198_105763609_105763699_105767336_105767464_105794524_105794636_105795608
transcript_52274.known	chr2	-	1197	5	FSM	ENSMUSG00000027166.15	ENSMUST00000102555.11	1197	5	0	0	0	0	multi-exon	TRUE	canonical	3	201	junction_2	6.37867541108654	1210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAAGAGTATTCTTTATAG	NA	False	NA	1	True	TATAAA	-19	NA	105833894	105797053	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_105797440_105800792_105800862_105811326_105811466_105832273_105832421_105833438
transcript_52281.known	chr2	-	697	4	FSM	ENSMUSG00000027166.15	ENSMUST00000124163.8	697	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	95.3496489534993	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACAACTTTTGTTTTCTCT	NA	False	NA	-74	True	NA	NA	NA	105833608	105797128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_105797440_105800792_105800862_105832273_105832421_105833438
transcript_52287.known	chr2	-	339	3	FSM	ENSMUSG00000027166.15	ENSMUST00000151581.2	339	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	102.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGACGCGTGCTCGCT	NA	False	NA	NA	False	AATACA	-39	NA	105833547	105797356	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_105797440_105832273_105832421_105833438
transcript_52289.known	chr2	-	605	3	FSM	ENSMUSG00000027166.15	ENSMUST00000155811.2	605	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	94	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAAGAGTATTCTTTATAG	NA	False	NA	1	True	TATAAA	-19	NA	105832353	105797053	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_105797440_105811326_105811466_105832273
transcript_52290.known	chr2	+	2848	7	FSM	ENSMUSG00000016386.16	ENSMUST00000111063.8	2848	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	4.49691252107735	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGGTGCTGCGTGGTTGGGC	NA	False	NA	NA	False	AATAAA	-18	NA	106523613	106698701	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_106524167_106529632_106529881_106575044_106575227_106613977_106614204_106691832_106691949_106694999_106695114_106697292
transcript_52292.nnic	chr2	-	1435	5	NNC	ENSMUSG00000027122.16	novel	1363	5	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	3	134	junction_4	54.0046294311886	82	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATACATAAACTTTAATTTT	NA	False	NA	NA	False	AATAAA	-13	NA	106804799	106794773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_106795216_106795766_106795992_106797444_106797573_106799416_106799904_106804646
transcript_52293.nnic	chr2	-	1708	4	NNC	ENSMUSG00000027122.16	novel	3337	5	NA	NA	0	10	intron_retention	FALSE	canonical	3	4	junction_3	115.129878350013	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAATTTTCTTGTCCATT	NA	False	NA	NA	False	AATAAA	-23	NA	106804742	106794763	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_106795992_106797444_106797573_106799416_106799643_106804616
transcript_52295.nnic	chr2	-	1996	4	NNC	ENSMUSG00000027122.16	novel	3337	5	NA	NA	-30	10	intron_retention	FALSE	canonical	3	134	junction_3	55.0292851327566	97	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAATTTTCTTGTCCATT	NA	False	NA	NA	False	AATAAA	-23	NA	106804799	106794763	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_106795992_106797444_106797573_106799416_106799904_106804646
transcript_52298.known	chr2	-	3337	5	FSM	ENSMUSG00000027122.16	ENSMUST00000028536.13	3337	5	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_1	43.6863823176056	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGACTTACTGTTTATTA	NA	False	NA	NA	False	AATAAA	-19	NA	106804769	106792871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_106795216_106795766_106795992_106797444_106797573_106799416_106799904_106804616
transcript_52299.known	chr2	-	333	1	FSM	ENSMUSG00000083424.4	ENSMUST00000121779.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2652	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	NA	False	NA	NA	False	NA	NA	NA	108705603	108705270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_108705300_108705600
transcript_52302.known	chr2	-	1894	6	FSM	ENSMUSG00000057234.10	ENSMUST00000081631.10	1894	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	7.25534285888682	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTATTTATTTATTTTAT	NA	False	NA	NA	False	AATAAA	-20	NA	109108635	108922641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_108923643_108961829_108962009_108967685_108967878_109021896_109022034_109104733_109105021_109108537
transcript_52311.known	chr2	+	3369	17	FSM	ENSMUSG00000027115.15	ENSMUST00000028527.8	3369	17	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_13	41.1567126967157	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTTGGTTTTCCTGTTTT	1376	False	NA	25	True	ATTAAA	-16	NA	109111082	109172092	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_109111239_109118141_109118512_109120023_109120182_109122409_109122515_109123315_109123427_109125283_109125482_109126964_109127142_109128419_109128495_109128681_109128795_109133147_109133311_109137194_109137360_109140891_109141014_109148219_109148456_109163600_109164013_109164665_109164774_109168911_109169022_109171502
transcript_52313.known	chr2	+	1965	12	FSM	ENSMUSG00000027115.15	ENSMUST00000144924.8	1965	12	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_6	27.0380815007217	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAAAGACAATGTGAGGGA	1490	False	NA	NA	False	AATACA	-13	NA	109111196	109141179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_109111239_109118141_109118512_109120023_109120182_109122409_109122515_109123315_109123427_109125283_109125482_109126964_109127142_109128419_109128495_109128681_109128795_109133147_109133311_109137194_109137360_109140891
transcript_52315.known	chr2	+	2176	11	FSM	ENSMUSG00000027115.15	ENSMUST00000151395.8	2176	11	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_6	27.6349416500198	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTAACGCCTCAGGATTT	1478	False	NA	NA	False	NA	NA	NA	109111184	109137846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_109111239_109118141_109118512_109120023_109120182_109122409_109122515_109123315_109123427_109125283_109125482_109126964_109127142_109128419_109128495_109128681_109128795_109133147_109133311_109137194
transcript_52316.known	chr2	+	4042	2	FSM	ENSMUSG00000048482.15	ENSMUST00000111047.9	4042	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAATTTTTAATGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	109506241	109557352	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_109506658_109553726
transcript_52317.known	chr2	+	3973	2	FSM	ENSMUSG00000048482.15	ENSMUST00000111045.9	3973	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAATTTTTAATGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	109523907	109557352	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_109524255_109553726
transcript_52318.known	chr2	+	4228	5	FSM	ENSMUSG00000027162.8	ENSMUST00000028583.8	4228	5	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_4	22.349496638627	621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGGGGTAATGTGGTTG	NA	False	NA	31	True	AGTAAA	-21	NA	109721197	109731348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_109721267_109724809_109724929_109725452_109725525_109726580_109726791_109727590
transcript_5232.known	chr1	-	3043	11	FSM	ENSMUSG00000062729.13	ENSMUST00000152689.8	3043	11	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_8	29.1204395571221	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTCTTTACTATTCAT	5189	False	NA	-15	True	AGTAAA	-16	NA	171108760	171104564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171106888_171107003_171107576_171107713_171107830_171107961_171108097_171108247_171108343_171108446
transcript_52321.known	chr2	+	746	4	FSM	ENSMUSG00000027162.8	ENSMUST00000151163.2	746	4	0	0	0	0	multi-exon	FALSE	canonical	3	366	junction_1	18.4932420089069	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTTGAGAGAATCCCAGG	NA	False	NA	NA	False	NA	NA	NA	109721214	109727083	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_109721267_109724809_109724929_109725452_109725525_109726580
transcript_52327.known	chr2	+	2070	6	FSM	ENSMUSG00000027160.17	ENSMUST00000028580.12	2070	6	0	0	0	0	multi-exon	FALSE	canonical	3	423	junction_3	38.5455574612691	1221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATCACCATTTTTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	109848161	109875661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_109848560_109852226_109852360_109862676_109862785_109870918_109871078_109871605_109871748_109874531
transcript_52328.known	chr2	+	2240	8	FSM	ENSMUSG00000027160.17	ENSMUST00000127630.8	2240	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	236.291846526057	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCATTTTTTTTAGAAGT	NA	False	NA	NA	False	AATAAA	-22	NA	109848324	109875667	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_109848560_109852226_109852360_109862676_109862785_109867749_109867880_109868424_109868622_109870918_109871078_109871605_109871748_109874531
transcript_52329.known	chr2	-	798	2	FSM	ENSMUSG00000083320.2	ENSMUST00000121859.2	798	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTAAAATCCAGATTTTTAA	NA	False	NA	-38	True	NA	NA	NA	110249964	110248514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_110249051_110249702
transcript_52331.known	chr2	+	2275	14	FSM	ENSMUSG00000027134.5	ENSMUST00000028554.4	2275	14	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_5	5.67252278910358	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCAGAGGGTGGAATCATT	NA	False	NA	NA	False	NA	NA	NA	112069812	112077456	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_112070403_112071795_112071939_112072269_112072491_112072820_112072934_112073045_112073107_112073348_112073408_112073603_112073639_112074185_112074241_112074327_112074411_112074664_112074791_112075007_112075141_112076140_112076240_112076619_112076777_112077056
transcript_52348.known	chr2	-	983	5	FSM	ENSMUSG00000027131.4	ENSMUST00000028551.4	983	5	0	0	0	0	multi-exon	FALSE	canonical	3	778	junction_3	24.5395089600424	6293	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACAAGTTCCCCTTCAGT	4997	False	NA	-5	True	AATAAA	-29	NA	112198372	112193355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_112193700_112194136_112194298_112194496_112194651_112197746_112197862_112198163
transcript_52353.nnic	chr2	+	1158	10	NNC	ENSMUSG00000027132.4	novel	2886	10	NA	NA	-32	-2804	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_9	161.88984213858	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTGTATAGTGCATTC	NA	False	NA	NA	False	AATAAA	-17	NA	112209523	112241781	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_112209703_112234505_112234622_112235102_112235144_112236418_112236699_112237930_112238050_112238727_112238779_112238868_112238959_112239485_112239576_112240487_112240582_112241683
transcript_52354.known	chr2	+	2886	10	FSM	ENSMUSG00000027132.4	ENSMUST00000028552.4	2886	10	0	0	0	0	multi-exon	FALSE	canonical	3	424	junction_7	47.4201082523719	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGGTGTGCATAGTTT	NA	False	NA	10	True	AATAAA	-20	NA	112209555	112244585	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_112209703_112234505_112234622_112235102_112235144_112236418_112236699_112237930_112238050_112238727_112238779_112238868_112238959_112239485_112239576_112240487_112240582_112242727
transcript_52366.known	chr2	+	1734	4	FSM	ENSMUSG00000027132.4	ENSMUST00000151257.2	1734	4	0	0	0	0	multi-exon	FALSE	canonical	3	500	junction_1	36.4264860903284	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGTTGT	NA	False	NA	NA	False	NA	NA	NA	112209570	112237863	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_112209703_112234505_112234622_112235102_112235144_112236418
transcript_5237.nic	chr1	+	2106	9	NIC	ENSMUSG00000052423.16	novel	2098	9	NA	NA	-2	0	combination_of_known_junctions	FALSE	non_canonical	1	46	junction_1	80.4478674359986	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGCTTGTGATTTCTGC	NA	False	NA	14	True	AATAAA	-14	NA	171097895	171104467	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_171097985_171098152_171098260_171098772_171098944_171099276_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
transcript_52370.nnic	chr2	+	967	5	NNC	ENSMUSG00000055943.6	novel	5826	5	NA	NA	-27	-4725	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_1	188.575415948103	814	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAAGATTATCTTCTGTTT	333	False	NA	4	True	ATTAAA	-17	NA	112285314	112297782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_112285485_112289804_112289925_112293145_112293285_112295081_112295163_112297325
transcript_52374.known	chr2	+	4735	6	FSM	ENSMUSG00000003604.15	ENSMUST00000003705.12	4735	6	0	0	0	0	multi-exon	FALSE	canonical	3	555	junction_4	26.4227174983952	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAACAAACAAACACAA	NA	False	NA	NA	False	GATAAA	-35	NA	112323308	112464918	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_112323567_112344794_112344973_112455499_112455571_112458093_112458190_112460084_112460422_112461123
transcript_52376.nnic	chr2	+	1421	6	NNC	ENSMUSG00000003604.15	novel	4735	6	NA	NA	362	342	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_1	226.791181486406	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTTTCCTTTCTTCAC	NA	False	NA	4	True	AATAAA	-15	NA	112323670	112461598	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_112323935_112344794_112344973_112455499_112455571_112458093_112458190_112460084_112460422_112461123
transcript_52377.known	chr2	+	4235	17	FSM	ENSMUSG00000044042.20	ENSMUST00000081349.9	4235	17	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	4.19076365356005	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTTTGTATTGATCTTAA	NA	False	NA	NA	False	NA	NA	NA	113271408	113540200	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_113273005_113274686_113274805_113309246_113309309_113355495_113356287_113359657_113359809_113393627_113393716_113412442_113412505_113414375_113414465_113423431_113423562_113425367_113425515_113426677_113426738_113433513_113433635_113467076_113467170_113518453_113518506_113523353_113523504_113538207_113538293_113539760
transcript_52378.known	chr2	-	832	2	FSM	ENSMUSG00000087545.2	ENSMUST00000148420.2	832	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCAGCAATTTGCCCACA	NA	False	NA	NA	False	NA	NA	NA	113272649	113271025	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_113271473_113272264
transcript_52379.known	chr2	-	4458	14	FSM	ENSMUSG00000041219.15	ENSMUST00000110949.9	4458	14	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	137.812367081877	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACGTCTTGTCTGCGTGTT	6058	False	NA	-7	True	ATTAAA	-14	NA	113678960	113661839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_113662643_113663014_113663107_113663244_113664808_113665122_113665262_113667210_113667317_113667770_113667898_113670019_113670188_113671043_113671119_113671941_113672086_113672251_113672416_113673030_113673285_113673591_113673689_113675599_113675671_113678305
transcript_52380.known	chr2	-	4958	12	FSM	ENSMUSG00000041219.15	ENSMUST00000102545.8	4958	12	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_2	47.4803134497789	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGTTTAAATGTTATTTA	6017	False	NA	-58	True	GATAAA	-18	NA	113679001	113661890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_113664808_113665122_113665262_113667210_113667317_113667770_113667898_113670019_113670188_113671043_113671119_113671941_113672086_113672251_113672416_113673030_113673285_113673591_113673689_113675599_113675671_113678305
transcript_52383.known	chr2	-	4878	11	FSM	ENSMUSG00000041219.15	ENSMUST00000110948.8	4878	11	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	114.655832821536	400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTTGTCTGCGTGTTGTA	6012	False	NA	-4	True	ATTAAA	-17	NA	113679006	113661836	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_113664808_113667210_113667317_113667770_113667898_113670019_113670188_113671043_113671119_113671941_113672086_113672251_113672416_113673030_113673285_113673591_113673689_113675599_113675671_113678305
transcript_52384.known	chr2	-	1316	1	FSM	ENSMUSG00000096006.2	ENSMUST00000178049.2	1316	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7970	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	7160	False	NA	NA	False	AGTAAA	-19	NA	113751486	113750170	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_113750200_113751500
transcript_52385.known	chr2	-	4888	35	FSM	ENSMUSG00000040383.17	ENSMUST00000043160.13	4888	35	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_21	28.9958832539162	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAAGGCATACTTGCCCTT	7809	False	NA	-3	True	ATTAAA	-19	NA	114005820	113931650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_113932211_113934484_113934599_113936280_113936456_113938584_113938671_113940364_113940536_113942962_113943135_113943699_113943888_113945060_113945133_113947003_113947142_113949157_113949380_113950390_113950527_113951685_113951796_113956371_113956483_113957436_113957507_113957993_113958141_113961015_113961258_113963447_113963618_113965132_113965301_113967350_113967530_113971349_113971492_113973468_113973590_113976108_113976212_113977369_113977474_113979419_113979534_113980879_113980997_113981999_113982065_113985445_113985523_113986727_113986829_113988020_113988090_113989350_113989492_113992044_113992166_113996673_113996710_114000507_114000549_114003171_114003229_114005572
transcript_52386.known	chr2	-	3112	9	FSM	ENSMUSG00000040383.17	ENSMUST00000131785.8	3112	9	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_1	25.6307920283397	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGCCAAA	7810	False	NA	NA	False	NA	NA	NA	114005819	113983223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_113985523_113986727_113986829_113988020_113988090_113989350_113989492_113992044_113992166_113996673_113996710_114000507_114000549_114003171_114003229_114005572
transcript_52390.nnic	chr2	-	1468	3	NNC	ENSMUSG00000040321.4	novel	4300	2	NA	NA	-8	2190	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	2	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAAGAAAACTCTGGCTT	NA	False	NA	NA	False	NA	NA	NA	114031929	114026850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_114028109_114031435_114031534_114031817
transcript_52391.known	chr2	-	4300	2	FSM	ENSMUSG00000040321.4	ENSMUST00000050668.4	4300	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGAGATTTTGTTTGGTGA	NA	False	NA	-4	True	AATAAA	-25	NA	114031950	114023941	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_114028109_114031817
transcript_52392.known	chr2	-	2597	2	FSM	ENSMUSG00000040321.4	ENSMUST00000123562.2	2597	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGGAAAAAAAAAAATCTAGG	NA	False	NA	NA	False	TTTAAA	-42	NA	114031921	114029040	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_114031534_114031817
transcript_52394.known	chr2	-	2734	9	FSM	ENSMUSG00000057147.14	ENSMUST00000102542.10	2734	9	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_3	18.9670767383907	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTTTTGTGTGAATGTC	NA	False	NA	-6	True	NA	NA	NA	114485445	114346900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_114348774_114350192_114350281_114353524_114353620_114366005_114366068_114398400_114398520_114399957_114400032_114475201_114475396_114478221_114478317_114485311
transcript_52396.known	chr2	-	2476	9	FSM	ENSMUSG00000057147.14	ENSMUST00000055144.8	2476	9	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_1	69.7096657573396	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	114485368	114347124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_114348774_114350149_114350281_114353524_114353620_114366005_114366068_114398400_114398520_114399957_114400032_114475201_114475396_114478221_114478317_114485311
transcript_5240.known	chr1	+	2098	9	FSM	ENSMUSG00000052423.16	ENSMUST00000111313.10	2098	9	0	0	0	0	multi-exon	FALSE	non_canonical	1	1	junction_1	95.4135734578681	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTGTGATTTCTGCAT	NA	False	NA	16	True	AATAAA	-16	NA	171097912	171104469	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_171097985_171098561_171098676_171098772_171098944_171099276_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
transcript_52400.known	chr2	-	2632	8	FSM	ENSMUSG00000057147.14	ENSMUST00000028640.14	2632	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	75.5804747488748	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGTGTGAATGTCAGTT	NA	False	NA	-2	True	NA	NA	NA	114485434	114346896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_114348774_114350192_114350281_114366005_114366068_114398400_114398520_114399957_114400032_114475201_114475396_114478221_114478317_114485311
transcript_52402.known	chr2	-	2590	7	FSM	ENSMUSG00000057147.14	ENSMUST00000150447.8	2590	7	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_1	15.088627063675	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAAAACTTGGTCTTTTA	NA	False	NA	NA	False	AATAAA	-19	NA	114485445	114351707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_114353620_114366005_114366068_114398400_114398520_114399957_114400032_114475201_114475396_114478221_114478317_114485311
transcript_52406.known	chr2	-	3010	3	FSM	ENSMUSG00000057147.14	ENSMUST00000138975.2	3010	3	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_2	16	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATTTTTCTATAGAGCCA	NA	False	NA	NA	False	ATTAAA	-15	NA	114485386	114472555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_114475396_114478221_114478317_114485311
transcript_52415.known	chr2	+	2735	11	FSM	ENSMUSG00000040282.14	ENSMUST00000110918.3	2735	11	0	0	0	0	multi-exon	FALSE	canonical	3	283	junction_9	22.3015694514983	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTACCCTTCTACCTGGA	NA	False	NA	7	True	AATAAA	-17	NA	115412213	115609249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_115412467_115461485_115461532_115462416_115462482_115469484_115469546_115473144_115473218_115500062_115500143_115500489_115500540_115505206_115505275_115516865_115516932_115517544_115517651_115607382
transcript_52433.nnic	chr2	+	810	6	NNC	ENSMUSG00000040282.14	novel	2770	11	NA	NA	-104	2661	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_5	132.367065390149	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGGGATGTGCTCGTA	NA	False	NA	NA	False	ATTAAA	-17	NA	115412092	115473785	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_115412467_115461485_115461532_115462416_115462482_115469484_115469546_115473144_115473218_115473594
transcript_52436.known	chr2	-	2810	12	FSM	ENSMUSG00000027210.21	ENSMUST00000102538.11	2810	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	18.227216050694	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTGGTGTTTTTTAATG	NA	False	NA	4	True	AATAAA	-25	NA	115895528	115693544	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_115694995_115697749_115697840_115699225_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994_115890046_115891161_115891213_115891931_115892074_115893668_115893902_115895282
transcript_52452.known	chr2	-	721	2	FSM	ENSMUSG00000086328.2	ENSMUST00000140185.2	721	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGATCTGAGTCTGTAC	NA	False	NA	NA	False	AATAAA	-20	NA	115897925	115896698	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_115897100_115897605
transcript_52457.known	chr2	+	1710	3	FSM	ENSMUSG00000085316.2	ENSMUST00000126467.2	1710	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCACTTGGAAAGCATCC	NA	False	NA	NA	False	AATAAA	-18	NA	116730632	116743272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_116730813_116741201_116741318_116741858
transcript_52458.nic	chr2	+	470	4	ISM	ENSMUSG00000027349.6	ENSMUST00000028825.5	1861	8	-22	11299	-22	0	5prime_fragment	FALSE	canonical	2	2	junction_2	0.471404520791032	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGATAAAAATAGTGAAATTT	NA	False	NA	NA	False	CATAAA	-12	NA	117080197	117090722	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_117080320_117088114_117088261_117089701_117089837_117090655
transcript_52459.known	chr2	+	1861	8	FSM	ENSMUSG00000027349.6	ENSMUST00000028825.5	1861	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.1780301787479	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCACTGTGTCATGGCTTA	NA	False	NA	44	True	ATTAAA	-22	NA	117080219	117102021	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_117080320_117088114_117088261_117089701_117089837_117090655_117090835_117093319_117093401_117094303_117094421_117098260_117098429_117101086
transcript_5246.known	chr1	+	1998	8	FSM	ENSMUSG00000052423.16	ENSMUST00000064272.10	1998	8	0	0	0	0	multi-exon	FALSE	non_canonical	1	74	junction_2	53.1005976368228	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCTTGTGATTTCTGCA	NA	False	NA	15	True	AATAAA	-15	NA	171097897	171104468	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_171097985_171098772_171098944_171099276_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
transcript_52460.nic	chr2	-	1143	5	ISM	ENSMUSG00000027347.19	ENSMUST00000178884.8	5104	17	4283	18099	4115	0	internal_fragment	FALSE	non_canonical	0	0	junction_3	18.2944663764757	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	117169075	117128573	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_117129097_117130923_117131056_117132441_117132503_117136256_117136365_117168756
transcript_52462.nic	chr2	-	572	2	ISM	ENSMUSG00000027347.19	ENSMUST00000110898.2	1260	6	4275	7594	4059	-7594	internal_fragment	FALSE	canonical	3	32	junction_1	0	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCCCTGTAAGGATGTGG	NA	False	NA	NA	False	AGTAAA	-23	NA	117169131	117136167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_117136365_117168756
transcript_52463.known	chr2	-	1673	11	FSM	ENSMUSG00000027344.15	ENSMUST00000028821.10	1673	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2.92574776766556	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACCTGGCTTTATTGTCT	NA	False	NA	NA	False	NA	NA	NA	118087447	118035368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_118035656_118052806_118052942_118063384_118063541_118067394_118067506_118070872_118071031_118072123_118072217_118078775_118078873_118080286_118080442_118082119_118082301_118083766_118083900_118087280
transcript_52465.known	chr2	-	1025	6	FSM	ENSMUSG00000027344.15	ENSMUST00000028820.7	1025	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	2.68328157299975	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACTCGGTTTTGTGTATA	NA	False	NA	NA	False	AATAAA	-21	NA	118087437	118075144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_118075447_118078775_118078873_118080286_118080442_118082119_118082301_118083766_118083900_118087280
transcript_52467.nic	chr2	+	688	5	ISM	ENSMUSG00000005102.14	ENSMUST00000110877.8	2134	11	-23	17270	-23	-17270	5prime_fragment	FALSE	canonical	3	82	junction_2	10.4013220313574	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGGAAATGGCTAAGCAG	NA	False	NA	41	True	NA	NA	NA	118219075	118241424	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_118219334_118231015_118231129_118235527_118235631_118238832_118238986_118241363
transcript_52472.known	chr2	-	765	5	FSM	ENSMUSG00000009549.15	ENSMUST00000138189.2	765	5	0	0	0	0	multi-exon	FALSE	canonical	2	110	junction_4	586.489130334058	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTATCCTACAGGTGGTT	NA	False	NA	-13	True	ATTAAA	-5	NA	118310129	118306341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_118306789_118307307_118307341_118309401_118309515_118309858_118309932_118310030
transcript_52475.known	chr2	-	798	5	FSM	ENSMUSG00000009549.15	ENSMUST00000009693.15	798	5	0	0	0	0	multi-exon	FALSE	canonical	3	1430	junction_1	23.7421039505769	10484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGTGGTTTGTTTTTCTTG	NA	False	NA	-2	True	ATTAAA	-16	NA	118310192	118306330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_118306789_118307307_118307341_118309401_118309515_118309858_118309932_118310071
transcript_52476.known	chr2	-	542	3	FSM	ENSMUSG00000009549.15	ENSMUST00000149615.8	542	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	715	1086	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGGTGGTTTGTTTTTCTT	NA	False	NA	-3	True	ATTAAA	-15	NA	118309364	118306331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_118306789_118307307_118307341_118309312
transcript_52477.known	chr2	-	4642	5	FSM	ENSMUSG00000040093.17	ENSMUST00000090219.13	4642	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	1.11803398874989	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTCTTTATTTTTTCTA	NA	False	NA	1	True	AATAAA	-16	NA	118380168	118359237	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_118363141_118375562_118375727_118377196_118377494_118379521_118379652_118380020
transcript_52481.known	chr2	+	3668	23	FSM	ENSMUSG00000040084.10	ENSMUST00000038341.8	3668	23	0	0	0	0	multi-exon	TRUE	canonical	3	422	junction_10	74.3091181573454	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTTGCTGGCAATTCA	NA	False	NA	15	True	AATAAA	-16	NA	118428691	118472072	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_118428943_118430618_118430766_118435894_118435955_118437024_118437170_118440263_118440461_118443055_118443223_118445411_118445627_118445924_118446017_118448186_118448417_118452615_118452729_118453550_118453667_118454761_118454812_118456503_118456562_118457333_118457443_118460383_118460647_118461425_118461560_118462239_118462381_118462891_118462993_118465608_118465759_118467180_118467324_118468881_118469057_118470113_118470221_118471568
transcript_52503.nnic	chr2	+	534	3	NNC	ENSMUSG00000040084.10	novel	3668	23	NA	NA	-20	-6912	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	274.5	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTACTATATATATATATAT	NA	False	NA	NA	False	ATTAAA	-16	NA	118428671	118433364	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_118428943_118430618_118430766_118433248
transcript_52504.known	chr2	+	436	2	FSM	ENSMUSG00000074923.11	ENSMUST00000152550.2	436	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTAACTCCGTGTTCACA	NA	False	NA	NA	False	NA	NA	NA	118494242	118495437	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_118494505_118495263
transcript_52506.known	chr2	+	839	10	FSM	ENSMUSG00000027331.16	ENSMUST00000123104.2	839	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_7	167.506403046953	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACGAAGCCAGTGACTT	NA	False	NA	NA	False	NA	NA	NA	118644776	118664549	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_118644791_118644881_118644974_118648344_118648472_118649315_118649364_118653900_118654007_118654173_118654268_118659439_118659496_118661292_118661451_118662033_118662109_118664480
transcript_5251.known	chr1	-	4412	8	FSM	ENSMUSG00000062729.13	ENSMUST00000155083.9	4412	8	0	0	0	0	multi-exon	TRUE	canonical	3	87	junction_6	18.2633792165679	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGTGGGGATTTTCCTC	5189	False	NA	NA	False	AATAAA	-12	NA	171108760	171103562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_171104773_171104858_171104902_171105019_171105378_171105454_171105574_171105707_171106888_171107003_171108097_171108247_171108343_171108446
transcript_52510.known	chr2	+	4602	9	FSM	ENSMUSG00000027331.16	ENSMUST00000134661.8	4602	9	0	0	0	0	multi-exon	FALSE	canonical	3	391	junction_3	12.8038080273019	1040	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATTCACCCTCA	NA	False	NA	NA	False	AATAAA	-7	NA	118644483	118668177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_118644791_118644881_118644974_118648344_118648472_118649315_118649364_118653900_118654007_118654173_118654268_118659439_118659496_118662033_118662109_118664480
transcript_52511.known	chr2	+	1241	8	FSM	ENSMUSG00000027331.16	ENSMUST00000028803.14	1241	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	143.771076538293	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAATATTCTGACTAACAC	NA	False	NA	21	True	AATAAA	-14	NA	118644734	118665123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_118644791_118644881_118644974_118648344_118648472_118649315_118649364_118653900_118654007_118654173_118654268_118662033_118662109_118664480
transcript_52513.known	chr2	+	799	8	FSM	ENSMUSG00000027331.16	ENSMUST00000134579.8	799	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	146.271623205262	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCCAGTTGATGCTGGGG	NA	False	NA	NA	False	NA	NA	NA	118644712	118664730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_118644791_118644881_118644974_118649315_118649364_118653900_118654007_118654173_118654268_118659439_118659496_118662033_118662109_118664480
transcript_52515.known	chr2	+	3665	12	FSM	ENSMUSG00000027332.12	ENSMUST00000028807.6	3665	12	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_8	15.0382432594562	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGAAAAGTGGATGGGAAT	NA	False	NA	NA	False	AATAAA	-20	NA	118692434	118713390	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_118692649_118699915_118700006_118700211_118700264_118701858_118702029_118703365_118703460_118703648_118703786_118705145_118705243_118706796_118706891_118707368_118707451_118708141_118708247_118708355_118708429_118710933
transcript_52519.nnic	chr2	+	1968	11	NIC	ENSMUSG00000027332.12	novel	3665	12	NA	NA	35	337	combination_of_known_splicesites	FALSE	canonical	3	32	junction_9	56.9639359595174	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTCTGCGCCCAAAGCCG	NA	False	NA	45	True	ATTAAA	-17	NA	118692469	118711833	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_118692649_118699915_118700006_118700211_118700264_118701858_118702029_118703365_118703460_118703648_118703786_118705145_118705243_118706796_118706891_118707368_118707451_118708355_118708429_118710933
transcript_5252.known	chr1	-	2219	13	FSM	ENSMUSG00000053483.16	ENSMUST00000065941.12	2219	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	116.920794652714	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCATGTTTGTATTTGTG	NA	False	NA	NA	False	AATAAA	-20	NA	171115564	171109518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_171109877_171110070_171110186_171110268_171110377_171110588_171110668_171110927_171111015_171111210_171111315_171111534_171111600_171112150_171112310_171112499_171112612_171112827_171112949_171113114_171113175_171113922_171114544_171115334
transcript_52526.nnic	chr2	+	1189	10	NNC	ENSMUSG00000027332.12	novel	3665	12	NA	NA	-21	313	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	69.6920917631333	176	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGCCTGAGATCATAGAAC	NA	False	NA	NA	False	NA	NA	NA	118692413	118707760	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_118692649_118699915_118700006_118700211_118700264_118701858_118702029_118703365_118703460_118703648_118703786_118705145_118705243_118706796_118706891_118707368_118707451_118707622
transcript_5253.known	chr1	-	755	2	FSM	ENSMUSG00000053483.16	ENSMUST00000144393.8	755	2	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_1	0	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAAAGTGATGTTCAT	3469	False	NA	NA	False	AATAAA	-7	NA	171110480	171109531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_171109877_171110070
transcript_52531.known	chr2	+	662	2	FSM	ENSMUSG00000040007.9	ENSMUST00000151162.2	662	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGGAGACCCGGCTCCCA	NA	False	NA	NA	False	NA	NA	NA	118730857	118746960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_118730928_118746368
transcript_52533.known	chr2	-	1870	4	FSM	ENSMUSG00000039983.14	ENSMUST00000036470.14	1870	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_3	9.0921211313239	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGAAAAGATTTTCT	NA	False	NA	NA	False	NA	NA	NA	118859874	118848259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_118849646_118852549_118852707_118857618_118857869_118859797
transcript_52537.nnic	chr2	-	1335	3	NIC	ENSMUSG00000039983.14	novel	1870	4	NA	NA	-4	-382	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	14.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACTGTGTAGTGTGTGTG	NA	False	NA	-2	True	TATAAA	-15	NA	118859878	118848641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_118849646_118857618_118857869_118859797
transcript_52538.known	chr2	-	732	3	FSM	ENSMUSG00000039983.14	ENSMUST00000110833.2	732	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	11	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCCTCTAATCTTCAGTGC	NA	False	NA	NA	False	NA	NA	NA	118859858	118852285	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_118852707_118857618_118857869_118859797
transcript_5254.known	chr1	-	2706	2	FSM	ENSMUSG00000053483.16	ENSMUST00000153164.2	2706	2	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	GAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	171115532	171112035	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_171114544_171115334
transcript_52540.known	chr2	+	2706	3	FSM	ENSMUSG00000027324.2	ENSMUST00000028796.2	2706	3	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_2	2.5	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGATTCTGGTTCTCT	3255	False	NA	NA	False	CATAAA	-41	NA	118865270	118870250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_118865950_118867398_118867696_118868520
transcript_52542.known	chr2	+	5527	8	FSM	ENSMUSG00000027326.14	ENSMUST00000028799.12	5527	8	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	11.0822527732683	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTATAATTGTGTCTTGTG	7242	False	NA	NA	False	ATTAAA	-18	NA	118877630	118903400	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_118878042_118887761_118887813_118888835_118888876_118890024_118890085_118892840_118892903_118894525_118894579_118896429_118896483_118898603
transcript_52547.nic	chr2	+	1576	8	NIC	ENSMUSG00000027326.14	novel	1573	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	17.5963818173289	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAGAAATAATAGCCAT	7211	False	NA	NA	False	AATAAA	-28	NA	118877599	118899752	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_118877708_118887761_118887813_118888835_118888876_118890024_118890085_118892840_118892903_118894525_118894579_118896429_118896483_118898603
transcript_52548.known	chr2	+	1573	8	FSM	ENSMUSG00000027326.14	ENSMUST00000152380.8	1573	8	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	17.907927784951	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAGAAATAATAGCCAT	7211	False	NA	NA	False	AATAAA	-28	NA	118877599	118899752	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_118877705_118887761_118887813_118888835_118888876_118890024_118890085_118892840_118892903_118894525_118894579_118896429_118896483_118898603
transcript_52552.nic	chr2	+	626	5	ISM	ENSMUSG00000027326.14	ENSMUST00000028799.12	5527	8	-34	10530	-3	-3583	5prime_fragment	FALSE	canonical	3	41	junction_1	12.8840987267251	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGTCGAGTCAGCTTTGC	7208	False	NA	NA	False	AAAAAG	-8	NA	118877596	118892870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_118878042_118887761_118887813_118888835_118888876_118890024_118890085_118892840
transcript_52555.nic	chr2	+	597	4	ISM	ENSMUSG00000027326.14	ENSMUST00000028799.12	5527	8	-34	13315	-3	-6368	5prime_fragment	FALSE	canonical	3	41	junction_1	14.6363322667334	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTCCCGAGTGCAAATGC	7208	False	NA	NA	False	NA	NA	NA	118877596	118890085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_118878042_118887761_118887813_118888835_118888876_118890024
transcript_52559.known	chr2	-	2249	13	FSM	ENSMUSG00000070730.12	ENSMUST00000094695.12	2249	13	0	0	0	0	multi-exon	TRUE	canonical	3	215	junction_12	29.1989107483291	318	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTTTTGACTGTTTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	118987515	118967481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_118968234_118968827_118968909_118969519_118969574_118969832_118969932_118970524_118970603_118970740_118970817_118973108_118973170_118976818_118976922_118977789_118978076_118983856_118984001_118984370_118984564_118986838_118987033_118987387
transcript_52569.known	chr2	+	3368	10	FSM	ENSMUSG00000027323.11	ENSMUST00000028795.10	3368	10	0	0	0	0	multi-exon	FALSE	canonical	3	651	junction_5	89.2808026867762	2033	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTACAAGTCCTATGCTCT	NA	False	NA	NA	False	AATAAA	-25	NA	118943287	118967771	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_118943516_118946792_118946882_118949088_118949227_118951906_118952025_118954264_118954357_118957543_118957639_118961984_118962099_118964554_118964685_118964867_118964990_118965529
transcript_5257.known	chr1	-	1007	7	FSM	ENSMUSG00000062963.11	ENSMUST00000080001.9	1007	7	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_6	130.826539101718	4309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTGGTTCTCATTGATG	7283	False	NA	0	True	AATAAA	-18	NA	171122597	171116135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_171116545_171116743_171116835_171117090_171117168_171117456_171117521_171117721_171117790_171122206_171122401_171122493
transcript_52570.known	chr2	+	645	3	FSM	ENSMUSG00000046814.4	ENSMUST00000057454.4	645	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	2.5	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTTGTGCAGTGACTC	1208	False	NA	20	True	AATAAA	-27	NA	118998253	119002871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_118998355_119000156_119000252_119002422
transcript_52577.known	chr2	+	2008	11	FSM	ENSMUSG00000068580.12	ENSMUST00000090174.11	2008	11	0	0	0	0	multi-exon	FALSE	canonical	1	23	junction_1	26.2152627299442	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAGATGTTTTTTCTGTC	4288	False	NA	8	True	NA	NA	NA	119039114	119047530	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_119039665_119040962_119041085_119041261_119041313_119041661_119041781_119041878_119042025_119042386_119042496_119045314_119045522_119045934_119046009_119046689_119046789_119046912_119047023_119047109
transcript_5258.known	chr1	-	1677	2	FSM	ENSMUSG00000062963.11	ENSMUST00000138974.2	1677	2	0	0	0	0	multi-exon	FALSE	canonical	3	598	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCTGTGGTTCTCATTGA	NA	False	NA	-2	True	AATAAA	-16	NA	171118013	171116137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_171116545_171116743
transcript_52585.known	chr2	+	745	1	FSM	ENSMUSG00000081572.4	ENSMUST00000122061.2	745	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCTTTAAGAGCAACAAATA	9857	False	NA	NA	False	NA	NA	NA	119017997	119018742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_119018000_119018700
transcript_52586.known	chr2	-	1008	11	FSM	ENSMUSG00000034278.4	ENSMUST00000038439.4	1008	11	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_10	69.3010822426317	1687	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTACTTTTCTTCCTCTTG	NA	False	NA	-4	True	AATAAA	-15	NA	119039276	119002980	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_119003167_119009832_119009944_119010365_119010447_119010967_119011046_119011406_119011451_119014079_119014177_119014397_119014484_119016176_119016265_119016509_119016569_119016826_119016897_119039168
transcript_5259.known	chr1	-	408	1	FSM	ENSMUSG00000079137.4	ENSMUST00000088784.6	408	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	148	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGGTATATTTTTGTTAAAA	3087	False	NA	NA	False	NA	NA	NA	171133067	171132659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_171132700_171133100
transcript_52592.nnic	chr2	-	980	5	NNC	ENSMUSG00000027317.9	novel	787	4	NA	NA	-513	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_4	15.337861650178	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGGAGTGTGGTGTGTAT	NA	False	NA	NA	False	GATAAA	-18	NA	119060900	119048599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_119048905_119049106_119049140_119049244_119049329_119060022_119060323_119060642
transcript_52593.nnic	chr2	-	1222	5	NNC	ENSMUSG00000027317.9	novel	787	4	NA	NA	-7373	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	17.007351351695	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGGAGTGTGGTGTGTAT	NA	False	NA	NA	False	GATAAA	-18	NA	119067760	119048599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_119048905_119049106_119049140_119049244_119049329_119060022_119060323_119067260
transcript_52596.known	chr2	-	787	4	FSM	ENSMUSG00000027317.9	ENSMUST00000076084.6	787	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	4.96655480858378	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGGAGTGTGGTGTGTAT	NA	False	NA	NA	False	GATAAA	-18	NA	119060387	119048599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_119048905_119049106_119049140_119049244_119049329_119060022
transcript_52597.known	chr2	-	790	5	FSM	ENSMUSG00000027317.9	ENSMUST00000110820.3	790	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_4	21.0297408448131	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACCTTTAGGAACCCAGA	NA	False	NA	NA	False	NA	NA	NA	119060346	119048620	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_119048905_119049106_119049140_119049244_119049329_119058237_119058303_119060022
transcript_52601.known	chr2	+	2273	11	FSM	ENSMUSG00000027315.14	ENSMUST00000028783.14	2273	11	0	0	0	0	multi-exon	TRUE	canonical	3	163	junction_1	46.3102580429002	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGTGTTTGTTGAGCTC	NA	False	NA	13	True	AATAAA	-1	NA	119067842	119079995	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_119067954_119068181_119068725_119075635_119075764_119075990_119076130_119076217_119076389_119076540_119076568_119076839_119076966_119077077_119077129_119078491_119078663_119078836_119078885_119079237
transcript_52603.known	chr2	+	1913	11	FSM	ENSMUSG00000027315.14	ENSMUST00000110816.8	1913	11	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	81.6752104374393	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGACCTGCTTATCCAAG	NA	False	NA	NA	False	NA	NA	NA	119067957	119079676	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_119068028_119068181_119068725_119075635_119075764_119075990_119076130_119076217_119076389_119076540_119076568_119076839_119076966_119077077_119077129_119078491_119078663_119078836_119078885_119079237
transcript_52608.known	chr2	+	2323	10	FSM	ENSMUSG00000027315.14	ENSMUST00000110817.3	2323	10	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_4	16.649620912898	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCTCCTCCCACCCCCAC	NA	False	NA	26	True	AATAAA	-14	NA	119068033	119080008	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_119068725_119075635_119075764_119075990_119076130_119076217_119076389_119076540_119076568_119076839_119076966_119077077_119077129_119078491_119078663_119078836_119078885_119079237
transcript_52609.nnic	chr2	-	1768	4	NNC	ENSMUSG00000034226.8	novel	1703	3	NA	NA	-6755	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_3	7.54247233265651	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTCTGTGGTCTCCT	4250	False	NA	-5	True	AATAAA	-17	NA	119108508	119099681	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_119100969_119101162_119101222_119101396_119101722_119108411
transcript_52612.known	chr2	-	1703	3	FSM	ENSMUSG00000034226.8	ENSMUST00000037360.8	1703	3	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	0	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTCTGTGGTCTCCT	NA	False	NA	-5	True	AATAAA	-17	NA	119101753	119099681	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_119100969_119101162_119101222_119101396
transcript_52613.known	chr2	+	4054	5	FSM	ENSMUSG00000034216.13	ENSMUST00000037280.5	4054	5	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_3	7.17635004720366	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTCCCTCTTCCTAAATC	6377	False	NA	NA	False	TATAAA	-13	NA	119119222	119128934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_119119612_119120633_119120776_119123178_119123271_119123399_119125271_119127374
transcript_52616.known	chr2	+	1637	3	FSM	ENSMUSG00000027313.4	ENSMUST00000028780.4	1637	3	0	0	0	0	multi-exon	FALSE	canonical	3	568	junction_2	33	955	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCAAGTAGGGAAAGCCTC	7152	False	NA	81	True	GATAAA	-13	NA	119181709	119184862	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_119182118_119182837_119182874_119183669
transcript_52618.known	chr2	+	2609	7	FSM	ENSMUSG00000014077.14	ENSMUST00000014221.13	2609	7	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_2	25.1197133741609	1234	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTGAGTTTTACCCGG	NA	False	NA	NA	False	AATAAA	-25	NA	119378177	119417508	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_119378399_119391211_119391285_119397130_119397212_119402248_119402377_119411175_119411238_119415010_119415134_119415587
transcript_52625.known	chr2	+	1381	3	FSM	ENSMUSG00000085438.2	ENSMUST00000147425.2	1381	3	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_2	178.5	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTACTTGGACAGATTTT	NA	False	NA	NA	False	TATAAA	-29	NA	119424777	119431227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_119424916_119426739_119426824_119430068
transcript_52626.known	chr2	+	8300	3	FSM	ENSMUSG00000085438.2	ENSMUST00000153581.2	8300	3	0	0	0	0	multi-exon	FALSE	canonical	3	345	junction_2	41.5	800	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTGTTGTTGCTTTTAA	NA	False	NA	24	True	AATAAA	-30	NA	119424783	119437983	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_119424916_119426739_119426993_119430068
transcript_52628.known	chr2	+	2960	11	FSM	ENSMUSG00000027306.16	ENSMUST00000068225.15	2960	11	0	0	0	0	multi-exon	FALSE	canonical	3	927	junction_3	141.2501327433	910	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATCTATAGTTCAGTAC	NA	False	NA	NA	False	AATAAA	-21	NA	119448778	119480641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_119449377_119454598_119454668_119458027_119458175_119460817_119460987_119464200_119464300_119465958_119466069_119468928_119469045_119470057_119470216_119474264_119474382_119477570_119477680_119479373
transcript_52631.known	chr2	+	3526	10	FSM	ENSMUSG00000027306.16	ENSMUST00000028771.8	3526	10	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_4	379.300265433633	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAACTAAAAAATATTGC	NA	False	NA	NA	False	NA	NA	NA	119449197	119481725	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_119449377_119454598_119454668_119458027_119458175_119460817_119460987_119465958_119466069_119468928_119469045_119470057_119470216_119474264_119474382_119477570_119477680_119479373
transcript_52643.known	chr2	-	1082	6	FSM	ENSMUSG00000072980.4	ENSMUST00000123818.2	1082	6	0	0	0	0	multi-exon	FALSE	canonical	3	618	junction_4	35.3870032639103	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTTTGCTTATGTAAAATA	7480	False	NA	NA	False	NA	NA	NA	119448950	119440451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_119440846_119442232_119442337_119443492_119443575_119446012_119446136_119448334_119448402_119448638
transcript_52644.known	chr2	-	1778	5	FSM	ENSMUSG00000072980.4	ENSMUST00000110805.3	1778	5	0	0	0	0	multi-exon	FALSE	canonical	3	618	junction_4	27.7758888246623	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAGAATT	7480	False	NA	NA	False	NA	NA	NA	119448950	119439992	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_119440846_119442232_119442337_119443492_119443575_119446012_119446136_119448334
transcript_52645.known	chr2	+	557	4	FSM	ENSMUSG00000027306.16	ENSMUST00000125491.2	557	4	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	610.942441369616	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTGTGCTAATAACATTAT	NA	False	NA	NA	False	AGTAAA	-3	NA	119449209	119460986	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_119449377_119454583_119454668_119458027_119458165_119460817
transcript_5265.nic	chr1	-	1723	7	NIC	ENSMUSG00000013997.11	novel	1335	7	NA	NA	-10	0	intron_retention	FALSE	canonical	3	10	junction_6	48.6646689087679	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTCTGGACATGTCTTT	868	False	NA	-10	True	AATATA	-8	NA	171173224	171169811	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_171170366_171171005_171171132_171171261_171171396_171171631_171171736_171171855_171172108_171172481_171172569_171172758
transcript_52656.known	chr2	-	1451	5	FSM	ENSMUSG00000027305.10	ENSMUST00000028768.2	1451	5	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_4	75.083287088406	846	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTACCCTCAGCCTTTTTC	NA	False	NA	-6	True	AATAAA	-16	NA	119493279	119485931	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482_119491141_119493089
transcript_52658.nnic	chr2	-	1386	5	NNC	ENSMUSG00000027305.10	novel	1478	5	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_4	127.660683062562	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCCTTTTTCTGCTG	NA	False	NA	-1	True	AATAAA	-21	NA	119493311	119485926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482_119491141_119493191
transcript_52660.known	chr2	-	1308	5	FSM	ENSMUSG00000027305.10	ENSMUST00000110802.8	1308	5	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_4	88.8453712919249	1015	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCCTTTTTCTGCTG	NA	False	NA	-1	True	AATAAA	-21	NA	119493302	119485926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482_119491141_119493260
transcript_52665.nnic	chr2	-	1310	4	NIC	ENSMUSG00000027305.10	novel	1478	5	NA	NA	-11	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_2	127.452823516085	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCCTTTTTCTGCTG	NA	False	NA	-1	True	AATAAA	-21	NA	119493319	119485926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_119486274_119486848_119486924_119490482_119491141_119493089
transcript_52668.nnic	chr2	-	1303	4	NIC	ENSMUSG00000027305.10	novel	1308	5	NA	NA	-175	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_2	130.10337769977	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCCTTTTTCTGCTG	NA	False	NA	-1	True	AATAAA	-21	NA	119493483	119485926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_119486274_119486848_119486924_119490482_119491141_119493260
transcript_52669.known	chr2	-	622	2	FSM	ENSMUSG00000027305.10	ENSMUST00000154127.2	622	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCCAGACGGCCGCCCAT	NA	False	NA	NA	False	AATAGA	-43	NA	119493293	119490738	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_119491141_119493073
transcript_5267.known	chr1	-	1335	7	FSM	ENSMUSG00000013997.11	ENSMUST00000111295.8	1335	7	0	0	0	0	multi-exon	TRUE	canonical	3	74	junction_6	27.0025718939676	527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTCTGGACATGTCTTT	879	False	NA	-10	True	AATATA	-8	NA	171173213	171169811	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_171170366_171171005_171171132_171171261_171171396_171171631_171171736_171171855_171172108_171172481_171172569_171173135
transcript_52674.known	chr2	+	4664	18	FSM	ENSMUSG00000027304.10	ENSMUST00000028767.9	4664	18	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_14	16.8134482341515	570	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTGGTCCAAAGCTTGCA	NA	False	NA	NA	False	AATAAA	-25	NA	119505548	119565888	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_119505762_119522596_119522708_119531598_119531747_119535919_119536125_119541445_119541561_119542489_119542602_119550646_119550783_119551555_119551734_119555305_119555389_119557197_119557286_119557373_119557482_119558018_119558097_119558875_119558998_119559159_119559218_119560374_119560453_119561135_119561232_119562884_119562997_119563265
transcript_52675.known	chr2	-	129	1	FSM	ENSMUSG00000064722.3	ENSMUST00000082788.3	129	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTGGAATTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119571437	119571308	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_119571300_119571400
transcript_52676.known	chr2	-	4744	25	FSM	ENSMUSG00000034032.16	ENSMUST00000048493.12	4744	25	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_24	70.0848691865005	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGGACTGTTTTGTCACA	464	False	NA	-2	True	AATAAA	-20	NA	119618018	119594440	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602378_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617895
transcript_52684.known	chr2	-	1385	6	FSM	ENSMUSG00000034032.16	ENSMUST00000156506.8	1385	6	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_5	119.666870937616	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAAAAAAATCCTCAAA	487	False	NA	NA	False	NA	NA	NA	119617995	119608131	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617895
transcript_52687.known	chr2	+	3989	19	FSM	ENSMUSG00000027298.18	ENSMUST00000028763.10	3989	19	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_12	19.4854329889133	244	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGTTTTGTTTTTTACT	NA	False	NA	NA	False	AATAAA	-22	NA	119629994	119648585	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_119630365_119632028_119632213_119632759_119632861_119633720_119633892_119635248_119635336_119636095_119636212_119638315_119638494_119639213_119639360_119639883_119640029_119640385_119640516_119640597_119640699_119640958_119641055_119641341_119641423_119642078_119642172_119642540_119642663_119643025_119643136_119643283_119643444_119643643_119643781_119647124
transcript_5270.known	chr1	+	2322	6	FSM	ENSMUSG00000013973.13	ENSMUST00000111299.8	2322	6	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	95.9804146688271	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATCCCACTTTTCTGA	1446	False	NA	NA	False	AATAAA	-11	NA	171156966	171169893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_171157095_171158801_171158854_171165819_171166209_171166390_171166499_171167760_171167908_171168395
transcript_52704.known	chr2	+	1373	8	FSM	ENSMUSG00000098789.8	ENSMUST00000044675.5	1373	8	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_5	32.3128836376389	512	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	6	True	NA	NA	NA	119857963	119863075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119861787_119861884_119862055_119862133_119862321_119862482_119862594
transcript_52705.known	chr2	-	3730	6	FSM	ENSMUSG00000027293.14	ENSMUST00000028755.8	3730	6	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_2	18.4217263034711	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATGCACAGTTCCTAGAC	NA	False	NA	NA	False	AATAAA	-20	NA	119985087	119919655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_119922166_119927443_119927609_119932500_119932914_119958072_119958171_119967379_119967557_119984720
transcript_52708.known	chr2	-	3116	20	FSM	ENSMUSG00000046971.8	ENSMUST00000054651.8	3116	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	4.71515503251053	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTGTCACTGAGCCTGT	9959	False	NA	NA	False	AATAAA	-22	NA	120144646	120130446	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_120131110_120131377_120131565_120132677_120132845_120133207_120133424_120133547_120133656_120133733_120133872_120134056_120134172_120135033_120135257_120135482_120135620_120137705_120137845_120138043_120138082_120138454_120138569_120138685_120138850_120141497_120141565_120141959_120142003_120142244_120142286_120142585_120142712_120142787_120142925_120143527_120143601_120144426
transcript_52709.nic	chr2	-	1576	6	ISM	ENSMUSG00000046971.8	ENSMUST00000054651.8	3116	20	10678	0	8890	0	3prime_fragment	FALSE	canonical	2	5	junction_5	3.9293765408777	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTGTCACTGAGCCTGT	3638	False	NA	NA	False	AATAAA	-22	NA	120133968	120130446	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_120131110_120131377_120131565_120132677_120132845_120133207_120133424_120133547_120133656_120133733
transcript_52710.nic	chr2	-	1616	5	ISM	ENSMUSG00000046971.8	ENSMUST00000142183.2	2610	15	8928	9	8928	0	3prime_fragment	FALSE	canonical	2	10	junction_2	2.54950975679639	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTGTCACTGAGCCTGT	3676	False	NA	NA	False	AATAAA	-22	NA	120133930	120130446	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_120131110_120131377_120131565_120132677_120132845_120133207_120133424_120133547
transcript_52711.nnic	chr2	-	1430	5	NIC	ENSMUSG00000046971.8	novel	3116	20	NA	NA	8928	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_4	4.76313972081441	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTGTCACTGAGCCTGT	3676	False	NA	NA	False	AATAAA	-22	NA	120133930	120130446	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_120131110_120131377_120131565_120132677_120132845_120133207_120133424_120133733
transcript_52712.nic	chr2	-	1025	2	ISM	ENSMUSG00000046971.8	ENSMUST00000142183.2	2610	15	11119	9	11119	0	3prime_fragment	FALSE	canonical	2	16	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTGTCACTGAGCCTGT	5867	False	NA	NA	False	AATAAA	-22	NA	120131739	120130446	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_120131110_120131377
transcript_52713.known	chr2	-	4339	25	FSM	ENSMUSG00000027291.16	ENSMUST00000028752.8	4339	25	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_15	25.6031410833385	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCCTTGAGCCTCCCTCT	NA	False	NA	NA	False	AATAAA	-18	NA	120183606	120146941	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_120148591_120149946_120150039_120151132_120151268_120151367_120151518_120152090_120152137_120152338_120152442_120153513_120153643_120154063_120154182_120154671_120154771_120155111_120155186_120155666_120155754_120155866_120156009_120156486_120156631_120159053_120159197_120163870_120164001_120168946_120169068_120169161_120169283_120169799_120169984_120172464_120172558_120173673_120173773_120174605_120174701_120176098_120176142_120176808_120176874_120180644_120180711_120183395
transcript_52720.known	chr2	-	2874	20	FSM	ENSMUSG00000033808.17	ENSMUST00000090042.12	2874	20	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_8	102.185508348021	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTCTCTCTCATTTAT	NA	False	NA	NA	False	TATAAA	-14	NA	120234550	120185792	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202114_120204391_120204461_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
transcript_52722.known	chr2	-	2897	20	FSM	ENSMUSG00000033808.17	ENSMUST00000090046.12	2897	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	114.209531889923	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTCTCTCTCATTTAT	NA	False	NA	NA	False	TATAAA	-14	NA	120234570	120185792	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202114_120204968_120205041_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
transcript_52725.known	chr2	-	2160	19	FSM	ENSMUSG00000033808.17	ENSMUST00000124806.8	2160	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	137.050871423806	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGGAATGGGGTGGGCAGA	NA	False	NA	NA	False	NA	NA	NA	120234558	120186453	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202114_120204391_120204461_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120234385
transcript_52729.nic	chr2	+	1445	12	ISM	ENSMUSG00000079110.13	ENSMUST00000139336.9	1589	14	3292	0	-74	0	3prime_fragment	FALSE	canonical	0	0	junction_1	2.76638619176417	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCATTCTCCTTATTAGCA	NA	False	NA	NA	False	AATAAA	-21	NA	120325199	120335392	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_120325423_120325716_120325729_120326345_120326555_120327458_120327496_120332583_120332662_120332867_120332926_120333009_120333075_120333456_120333526_120333613_120333693_120333829_120333947_120334576_120334636_120334953
transcript_52732.known	chr2	-	5125	7	FSM	ENSMUSG00000033808.17	ENSMUST00000143182.2	5125	7	0	0	0	0	multi-exon	FALSE	canonical	3	386	junction_1	23.2426810463471	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAAATAAGTAAAAAA	NA	False	NA	NA	False	ATTAAA	-42	NA	120234562	120211784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
transcript_5274.nic	chr1	+	1668	6	NIC	ENSMUSG00000013973.13	novel	849	5	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	78.1756995491566	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAGAGAAGCTGTGGC	1604	False	NA	18	True	NA	NA	NA	171157124	171169250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_171157261_171158820_171158854_171165819_171166209_171166390_171166499_171167760_171167908_171168395
transcript_52741.known	chr2	+	3099	5	FSM	ENSMUSG00000062646.13	ENSMUST00000154574.8	3099	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	3.77491721763537	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCACTGAGTGAAACAATG	NA	False	NA	NA	False	ATTAAA	-13	NA	120234376	120254140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_120235541_120236746_120236810_120241915_120242025_120249838_120249967_120252505
transcript_52749.known	chr2	+	1477	4	FSM	ENSMUSG00000062646.13	ENSMUST00000143409.8	1477	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	5.43650214343336	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGAGTGTCAGGATCTTTG	NA	False	NA	NA	False	ATTAAA	-15	NA	120234818	120246132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_120235541_120236746_120236810_120241915_120242025_120245549
transcript_5275.nic	chr1	+	2317	6	NIC	ENSMUSG00000013973.13	novel	849	5	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	78.1756995491566	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCACTTTTCTGAAACTGA	1604	False	NA	NA	False	AATAAA	-17	NA	171157124	171169899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_171157261_171158820_171158854_171165819_171166209_171166390_171166499_171167760_171167908_171168395
transcript_52754.known	chr2	-	4375	10	FSM	ENSMUSG00000027288.17	ENSMUST00000141874.8	4375	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	347.938372576396	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGTTTCATTGTTCCCT	9814	False	NA	-3	True	AATAAA	-43	NA	120394295	120356743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_120357566_120358817_120358879_120358955_120359111_120360928_120360999_120362075_120362704_120363991_120366161_120369775_120369974_120376323_120376383_120385711_120385797_120394167
transcript_52759.nic	chr2	-	489	4	ISM	ENSMUSG00000027288.17	ENSMUST00000055241.13	9085	22	-34	32486	2	-3886	5prime_fragment	FALSE	canonical	3	793	junction_1	163.709091582192	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAAAGTCGGTAAGTTGG	9787	False	NA	64	True	AATACA	-11	NA	120394322	120369786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_120369974_120376323_120376386_120385711_120385797_120394167
transcript_52760.known	chr2	-	9085	22	FSM	ENSMUSG00000027288.17	ENSMUST00000055241.13	9085	22	0	0	0	0	multi-exon	FALSE	canonical	3	679	junction_17	176.960671803312	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTATTTGTCTGCATA	9821	False	NA	-6	True	AATAAA	-21	NA	120394288	120337300	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_120340624_120340967_120341115_120343183_120343256_120344097_120344170_120344623_120344744_120345922_120345986_120346394_120346587_120349545_120349663_120350891_120351027_120353165_120353312_120354001_120354055_120354345_120355106_120357229_120357566_120358817_120358879_120358955_120359111_120360928_120360999_120362075_120362704_120363991_120366161_120369775_120369974_120376323_120376386_120385711_120385797_120394167
transcript_52765.known	chr2	+	2723	8	FSM	ENSMUSG00000027287.15	ENSMUST00000110711.9	2723	8	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_4	7.72221814385119	798	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACAGACCAGTAATGCCC	NA	False	NA	10	True	NA	NA	NA	120398151	120431736	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_120398288_120414749_120414847_120415631_120415674_120416036_120416086_120416639_120416758_120425281_120425438_120427123_120427269_120429756
transcript_52772.known	chr2	+	2658	8	FSM	ENSMUSG00000027287.15	ENSMUST00000028743.10	2658	8	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	118.449334729914	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACAGACCAGTAATGCCC	NA	False	NA	10	True	NA	NA	NA	120398171	120431736	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_120398243_120414749_120414847_120415631_120415674_120416036_120416086_120416639_120416758_120425281_120425438_120427123_120427269_120429756
transcript_52778.nnic	chr2	+	638	6	NNC	ENSMUSG00000027287.15	novel	2723	8	NA	NA	-36	4367	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_5	144.558638621149	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTTCTGGTTTTTCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	120398115	120421115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_120398288_120414749_120414847_120415631_120415674_120416036_120416086_120416639_120416758_120420955
transcript_52780.known	chr2	+	481	6	FSM	ENSMUSG00000027287.15	ENSMUST00000153580.8	481	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	182.043511282331	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTAATAGGTAAGTTGATG	NA	False	NA	NA	False	NA	NA	NA	120398203	120416748	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_120398288_120399763_120399864_120414749_120414847_120415631_120415674_120416036_120416086_120416639
transcript_52784.known	chr2	+	3154	6	FSM	ENSMUSG00000027285.14	ENSMUST00000124187.8	3154	6	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_2	54.4147038951789	752	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGCTCCAATATGAATCC	NA	False	NA	NA	False	AATAAA	-16	NA	120439863	120452041	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_120440027_120442818_120442912_120443531_120443602_120446335_120446469_120448353_120448463_120449455
transcript_5279.known	chr1	+	1618	5	FSM	ENSMUSG00000013973.13	ENSMUST00000064950.11	1618	5	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	61.0184398358398	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAGAGAAGCTGTGGC	1455	False	NA	18	True	NA	NA	NA	171156975	171169250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_171157095_171165819_171166209_171166390_171166499_171167760_171167908_171168395
transcript_52790.known	chr2	+	3055	6	FSM	ENSMUSG00000027285.14	ENSMUST00000110706.2	3055	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	110.188202635309	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGCTCCAATATGAATCC	NA	False	NA	NA	False	AATAAA	-16	NA	120440075	120452041	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_120440140_120442818_120442912_120443531_120443602_120446335_120446469_120448353_120448463_120449455
transcript_52791.known	chr2	-	1848	6	FSM	ENSMUSG00000027286.17	ENSMUST00000102496.8	1848	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	68.2800117164606	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTGGAAGTAATGTT	NA	False	NA	NA	False	AATAAA	-15	NA	120439796	120434718	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398_120439505_120439669
transcript_52793.known	chr2	-	1961	6	FSM	ENSMUSG00000027286.17	ENSMUST00000102499.8	1961	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_5	57.8321709777525	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTGGAAGTAATGTT	NA	False	NA	NA	False	AATAAA	-15	NA	120440001	120434718	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398_120439505_120439761
transcript_52799.known	chr2	+	1430	5	FSM	ENSMUSG00000027285.14	ENSMUST00000028741.14	1430	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	111.162887242101	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCTGAATTGAATGTTCC	NA	False	NA	NA	False	TTTAAA	-4	NA	120439863	120450387	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_120440027_120442818_120442912_120446335_120446469_120448353_120448463_120449455
transcript_52815.known	chr2	-	1962	6	FSM	ENSMUSG00000027286.17	ENSMUST00000102497.10	1962	6	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_5	44.5394207416307	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTGGAAGTAATGTT	NA	False	NA	NA	False	AATAAA	-15	NA	120439836	120434718	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398_120439505_120439595
transcript_52816.known	chr2	-	5996	28	FSM	ENSMUSG00000027284.17	ENSMUST00000110700.2	5996	28	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_27	22.3478547470889	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAACTTTGCTTGAATAT	6114	False	NA	NA	False	NA	NA	NA	120561999	120547002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_120549409_120549621_120549730_120550904_120551087_120551214_120551279_120551362_120551471_120553090_120553240_120553419_120553499_120553672_120553737_120554228_120554388_120554613_120554718_120554813_120554948_120555152_120555208_120555372_120555463_120555656_120555745_120556075_120556243_120556401_120556549_120556657_120556779_120557070_120557277_120557777_120557854_120558338_120558429_120558814_120558925_120559091_120559213_120560011_120560091_120560169_120560284_120560410_120560581_120560779_120560984_120561182_120561669_120561884
transcript_52817.known	chr2	-	8046	41	FSM	ENSMUSG00000027284.17	ENSMUST00000148285.8	8046	41	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_27	24.9009914461252	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATGGCTGTTCTCCCTG	NA	False	NA	NA	False	AATAAA	-15	NA	120680609	120548666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_120549409_120549621_120549730_120550904_120551087_120551214_120551279_120551362_120551471_120553137_120553240_120553419_120553499_120553672_120553737_120554228_120554388_120554613_120554718_120554813_120554948_120555152_120555208_120555372_120555463_120555656_120555745_120556075_120556243_120556401_120556549_120556657_120556779_120557070_120557277_120557777_120557854_120558338_120558429_120558814_120558925_120559091_120559213_120560011_120560091_120560169_120560581_120560779_120560987_120561182_120561674_120561892_120562225_120575499_120576771_120578915_120579505_120580718_120580931_120586310_120586528_120590677_120590836_120603709_120603836_120604300_120604394_120608014_120608081_120614175_120614281_120616459_120616601_120620762_120620837_120637239_120637388_120652953_120653090_120680536
transcript_52819.nic	chr2	-	1741	12	ISM	ENSMUSG00000027272.6	ENSMUST00000028728.6	7768	47	32	80477	9	4712	5prime_fragment	FALSE	canonical	3	79	junction_8	6.58447962262975	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGCAGTTTTTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	120801164	120771226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_120771606_120772957_120773057_120775131_120775221_120776314_120776423_120776754_120776879_120777102_120777166_120778238_120778378_120780520_120780652_120786090_120786202_120791565_120791645_120793844_120794102_120801002
transcript_5282.known	chr1	+	849	5	FSM	ENSMUSG00000013973.13	ENSMUST00000129116.8	849	5	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	84.8038177206663	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTCAAGTCCCGGGACCT	1657	False	NA	NA	False	NA	NA	NA	171157177	171168517	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_171157261_171165819_171166209_171166390_171166499_171167760_171167908_171168395
transcript_52821.known	chr2	-	1480	9	FSM	ENSMUSG00000027272.6	ENSMUST00000133408.2	1480	9	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_5	7.36545993132812	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120801094	120775938	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_120776423_120776754_120776879_120777102_120777166_120778238_120778378_120780520_120780652_120786090_120786202_120791565_120791645_120793844_120794102_120801002
transcript_52822.known	chr2	-	7768	47	FSM	ENSMUSG00000027272.6	ENSMUST00000028728.6	7768	47	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_19	10.4276243563166	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTCATGTTTGGGCATT	NA	False	NA	NA	False	AATAAA	-37	NA	120801196	120690749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_120693273_120694798_120694901_120696870_120697042_120698706_120698785_120701469_120701527_120703604_120703714_120705846_120705981_120707439_120707540_120711511_120711663_120712701_120712770_120720256_120720354_120722552_120722609_120723548_120723698_120725552_120725647_120726976_120727075_120730981_120731132_120732082_120732177_120734474_120734681_120737324_120737507_120739902_120739990_120741582_120741693_120742478_120742579_120745347_120745503_120745848_120745898_120746904_120747008_120748301_120748355_120751858_120751984_120754612_120754677_120756435_120756538_120756774_120756841_120759866_120759978_120760201_120760264_120761326_120761508_120764784_120764914_120765696_120765797_120771447_120771606_120772957_120773057_120775131_120775221_120776314_120776423_120776754_120776879_120777102_120777166_120778238_120778378_120780520_120780652_120786090_120786202_120791565_120791645_120793844_120794102_120801002
transcript_52823.known	chr2	-	1678	2	FSM	ENSMUSG00000027272.6	ENSMUST00000138824.2	1678	2	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAAATGCAATGCTCATCT	NA	False	NA	NA	False	NA	NA	NA	120801173	120792594	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_120794102_120801002
transcript_52824.known	chr2	+	2417	13	FSM	ENSMUSG00000054484.15	ENSMUST00000110686.3	2417	13	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	3.91843931516958	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTTGGAGAGATCAGTGG	NA	False	NA	NA	False	AATAAA	-25	NA	120808013	120838125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_120808292_120809611_120809750_120810953_120811000_120814814_120814957_120817063_120817189_120817316_120817440_120820811_120820968_120823958_120824119_120826886_120827001_120829554_120829640_120832977_120833083_120835162_120835282_120837299
transcript_52827.known	chr2	+	1569	11	FSM	ENSMUSG00000023572.17	ENSMUST00000060455.15	1569	11	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_6	15.0811140172071	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATGTGTCCTCTGAAGT	NA	False	NA	21	True	AATAAA	-30	NA	120838883	120847385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_120839091_120839198_120839259_120839523_120839604_120840307_120840390_120841914_120842012_120842163_120842238_120842833_120842911_120843179_120843458_120844438_120844500_120846611_120846659_120846879
transcript_52832.known	chr2	+	1632	10	FSM	ENSMUSG00000023572.17	ENSMUST00000099489.9	1632	10	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_5	15.8464857653396	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATGTGTCCTCTGAAGT	NA	False	NA	21	True	AATAAA	-30	NA	120838928	120847385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_120839259_120839523_120839604_120840307_120840390_120841914_120842012_120842163_120842238_120842833_120842911_120843179_120843458_120844438_120844500_120846611_120846659_120846879
transcript_52840.known	chr2	+	2477	11	FSM	ENSMUSG00000027259.16	ENSMUST00000119031.8	2477	11	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	26.5369553641709	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGCTTGAATTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	120970978	120987159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_120971091_120972573_120972785_120973004_120973136_120973629_120973691_120976513_120976602_120978721_120978804_120980700_120980828_120981611_120981693_120982910_120983050_120985199_120985301_120985815
transcript_52844.nic	chr2	+	2631	11	NIC	ENSMUSG00000027259.16	novel	2477	11	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	3	76	junction_1	16.3572613844739	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGCTTGAATTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	120970881	120987159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_120971148_120972573_120972785_120973004_120973136_120973629_120973691_120976513_120976602_120978721_120978804_120980700_120980828_120981611_120981693_120982910_120983050_120985199_120985301_120985815
transcript_52848.known	chr2	+	2298	10	FSM	ENSMUSG00000027259.16	ENSMUST00000066155.6	2298	10	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_7	12.1563883525403	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACACTAAAACAATAAT	971	False	NA	NA	False	NA	NA	NA	120972621	120987140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_120972785_120973004_120973136_120973629_120973691_120976513_120976602_120978721_120978804_120980700_120980828_120981611_120981693_120982910_120983050_120985199_120985301_120985815
transcript_52849.known	chr2	+	1231	9	FSM	ENSMUSG00000027259.16	ENSMUST00000110662.9	1231	9	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	48.3449519081362	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTTACTGCCCACTTGAA	NA	False	NA	NA	False	NA	NA	NA	120970979	120986070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_120971148_120972573_120972785_120973629_120973691_120976513_120976602_120980700_120980828_120981611_120981693_120982910_120983050_120985199_120985301_120985815
transcript_52850.known	chr2	-	9405	27	FSM	ENSMUSG00000043909.17	ENSMUST00000110647.8	9405	27	0	0	0	0	multi-exon	TRUE	canonical	3	11	junction_8	35.6224656526131	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTGTTGTTCTAACGTG	8138	False	NA	NA	False	NA	NA	NA	121101822	121025318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_121029089_121029456_121029603_121030087_121030288_121030783_121030879_121033023_121033240_121034813_121035030_121035400_121035593_121038179_121038611_121039561_121039834_121041750_121041904_121046147_121046653_121051638_121051732_121054185_121054244_121058125_121058330_121059068_121059189_121066053_121067351_121074374_121074578_121077981_121078077_121078644_121078772_121082348_121082516_121084082_121084213_121087002_121087162_121089624_121089750_121100384_121100470_121100699_121100791_121101004_121101190_121101752
transcript_52851.known	chr2	+	2887	19	FSM	ENSMUSG00000027263.13	ENSMUST00000144076.8	2887	19	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_18	58.617614173199	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTCTGGCCTTGTAGAACT	NA	False	NA	2	True	AATAAA	-14	NA	121001720	121029250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_121001953_121004038_121004168_121005820_121005944_121006251_121006306_121007008_121007066_121009150_121009231_121013969_121014172_121014814_121014981_121015182_121015308_121018612_121018664_121019005_121019112_121019842_121019951_121020304_121020447_121022713_121022892_121024422_121024558_121025890_121026008_121026583_121026724_121027215_121027352_121028644
transcript_52852.known	chr2	+	2915	19	FSM	ENSMUSG00000027263.13	ENSMUST00000138601.8	2915	19	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_18	57.833947056195	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTCTGGCCTTGTAGAACT	NA	False	NA	2	True	AATAAA	-14	NA	121001689	121029250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_121001953_121004038_121004168_121005820_121005944_121006251_121006306_121007008_121007066_121009150_121009231_121013969_121014172_121014814_121014981_121015182_121015308_121018612_121018664_121019005_121019112_121019842_121019951_121020307_121020447_121022713_121022892_121024422_121024558_121025890_121026008_121026583_121026724_121027215_121027352_121028644
transcript_52854.known	chr2	+	4206	18	FSM	ENSMUSG00000027263.13	ENSMUST00000039541.12	4206	18	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_12	42.7635326321784	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCTGGCCTTGTAGAACTA	NA	False	NA	3	True	AATAAA	-15	NA	121001695	121029251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_121001953_121004038_121004168_121005820_121005944_121006251_121006306_121007008_121007066_121009150_121009231_121013969_121014172_121014814_121014981_121015182_121015308_121018612_121018664_121019005_121019112_121019842_121019951_121020304_121020447_121022713_121022892_121024422_121024558_121025890_121026008_121026583_121026724_121027215
transcript_52856.known	chr2	+	4250	18	FSM	ENSMUSG00000027263.13	ENSMUST00000110658.8	4250	18	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_12	41.5047418810901	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCTGGCCTTGTAGAACTA	NA	False	NA	3	True	AATAAA	-15	NA	121001648	121029251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_121001953_121004038_121004168_121005820_121005944_121006251_121006306_121007008_121007066_121009150_121009231_121013969_121014172_121014814_121014981_121015182_121015308_121018612_121018664_121019005_121019112_121019842_121019951_121020307_121020447_121022713_121022892_121024422_121024558_121025890_121026008_121026583_121026724_121027215
transcript_52869.known	chr2	+	626	4	FSM	ENSMUSG00000027263.13	ENSMUST00000130929.8	626	4	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_3	25.3026129524645	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGCCCAATAAATATATTT	NA	False	NA	NA	False	ATTAAA	-20	NA	121001726	121006399	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_121001953_121004038_121004168_121005820_121005944_121006251
transcript_52871.nic	chr2	-	2624	3	ISM	ENSMUSG00000050619.15	ENSMUST00000163766.8	3611	6	-21	4941	-21	-496	5prime_fragment	FALSE	canonical	3	33	junction_1	2	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTCATTATCTTTGTT	NA	False	NA	NA	False	AATAAA	-22	NA	121001627	120996117	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_120997200_120999679_120999885_121000290
transcript_52872.known	chr2	-	2894	2	FSM	ENSMUSG00000050619.15	ENSMUST00000146243.2	2894	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATTAAAAACAAAATAACA	NA	False	NA	NA	False	TTTAAA	-41	NA	121001606	120995621	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_120997200_121000290
transcript_52873.known	chr2	-	3043	4	FSM	ENSMUSG00000043909.17	ENSMUST00000140285.8	3043	4	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_2	12.2474487139159	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAGTTAAAAAAAAAAAAG	8118	False	NA	NA	False	ATTAAA	-9	NA	121101842	121097792	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_121100470_121100699_121100791_121101004_121101190_121101752
transcript_52875.known	chr2	-	1442	10	FSM	ENSMUSG00000033526.17	ENSMUST00000131661.8	1442	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_9	33.734255586866	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATGATTCAAAAGTCAAA	NA	False	NA	NA	False	TTTAAA	-7	NA	121185556	121177528	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_121177867_121177961_121178124_121178947_121179050_121179174_121179330_121179654_121179741_121179955_121180047_121180427_121180624_121180957_121181133_121181397_121181495_121185516
transcript_52876.nic	chr2	-	1451	10	ISM	ENSMUSG00000033526.17	ENSMUST00000150081.8	2485	18	-38	6690	-16	0	5prime_fragment	FALSE	canonical	3	56	junction_9	18.8017598335769	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATGATTCAAAAGTCAAA	NA	False	NA	NA	False	TTTAAA	-7	NA	121185830	121177528	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_121177867_121177961_121178124_121178947_121179050_121179174_121179330_121179654_121179741_121179955_121180047_121180427_121180624_121180957_121181133_121181397_121181495_121185781
transcript_52878.known	chr2	-	1214	8	FSM	ENSMUSG00000033526.17	ENSMUST00000140764.8	1214	8	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_7	36.5619407335563	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATATCAGTCTCTGTAT	NA	False	NA	NA	False	AATACA	-35	NA	121185553	121178672	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_121179050_121179174_121179330_121179654_121179741_121179955_121180047_121180427_121180624_121180957_121181133_121181397_121181495_121185516
transcript_5288.known	chr1	+	757	5	FSM	ENSMUSG00000013973.13	ENSMUST00000142063.8	757	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	79.6445227244159	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGAAGTCGGTGACACCAG	1616	False	NA	NA	False	NA	NA	NA	171157136	171167863	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_171157261_171158820_171158854_171165819_171166209_171166390_171166499_171167760
transcript_52882.known	chr2	+	10145	6	FSM	ENSMUSG00000027254.14	ENSMUST00000110639.8	10145	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.2614551505325	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTGGTGCTGCCTAGGC	NA	False	NA	12	True	AATAAA	-17	NA	121125934	121139919	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_121126024_121129077_121129161_121129386_121129528_121129749_121137854_121137995_121138217_121138412
transcript_52883.known	chr2	-	3438	26	FSM	ENSMUSG00000033526.17	ENSMUST00000134644.8	3438	26	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_25	24.9560894372496	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTTCATGAGTCCAGGAA	NA	False	NA	NA	False	NA	NA	NA	121185558	121162553	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_121162873_121164893_121165059_121165203_121165318_121166876_121166985_121167206_121167322_121167563_121167692_121167929_121168154_121168302_121168445_121171231_121171415_121172096_121172219_121172385_121172518_121173057_121173141_121173235_121173346_121173441_121173518_121173619_121173707_121173956_121174059_121177744_121177867_121177961_121178124_121178947_121179050_121179174_121179330_121179654_121179741_121179955_121180047_121180427_121180624_121180957_121181133_121181397_121181495_121185516
transcript_52886.known	chr2	+	1518	10	FSM	ENSMUSG00000000308.15	ENSMUST00000078222.9	1518	10	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_1	32.5602954456217	542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCTGTGTTATTTCTAT	801	False	NA	32	True	AGTAAA	-20	NA	121188256	121194218	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_121188341_121189276_121189483_121190059_121190259_121190425_121190522_121191036_121191259_121191383_121191470_121191586_121191711_121193155_121193291_121193455_121193582_121193978
transcript_5289.known	chr1	-	3041	7	FSM	ENSMUSG00000013997.11	ENSMUST00000111289.8	3041	7	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_6	46.1904270986484	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTCTTGACTTGGTTCA	878	False	NA	2	True	ATTAAA	-23	NA	171173214	171168138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_171170366_171171005_171171132_171171261_171171396_171171631_171171736_171171855_171172108_171172481_171172569_171173103
transcript_52893.known	chr2	+	1620	9	FSM	ENSMUSG00000000308.15	ENSMUST00000000317.13	1620	9	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_3	17.8881070826401	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCTGTGTTATTTCTAT	1635	False	NA	32	True	AGTAAA	-20	NA	121189090	121194218	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_121189483_121190059_121190259_121190425_121190522_121191036_121191259_121191383_121191470_121191586_121191711_121193155_121193291_121193455_121193582_121193978
transcript_52899.known	chr2	+	959	3	FSM	ENSMUSG00000000308.15	ENSMUST00000145380.2	959	3	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_1	10.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1684	False	NA	NA	False	NA	NA	NA	121189139	121190842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_121189483_121190059_121190259_121190425
transcript_529.known	SIRV6	+	1435	9	FSM	SIRV6A	SIRV601	1435	9	0	0	0	0	multi-exon	TRUE	canonical	3	2056	junction_3	7596.8547757855	7233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACCGGGAGTATACTT	NA	False	NA	NA	False	NA	NA	NA	1000	11826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV6_+_1187_1468_1535_1640_1736_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
transcript_52924.known	chr2	-	1674	11	FSM	ENSMUSG00000027246.13	ENSMUST00000116432.2	1674	11	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_5	7.95235814082842	1130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTGTGCGATCATTAGC	NA	False	NA	-17	True	ATTAAA	-15	NA	121273082	121269507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_121270031_121270107_121270153_121270328_121270501_121270596_121270640_121270714_121270908_121271576_121271653_121271742_121271823_121271907_121272095_121272191_121272305_121272626_121272663_121272876
transcript_52955.known	chr2	+	425	3	FSM	ENSMUSG00000027245.12	ENSMUST00000028677.5	425	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2285	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTCAGTTTCTATGTTGG	NA	False	NA	-61	True	NA	NA	NA	121287614	121288844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_121287773_121288472_121288525_121288629
transcript_52957.known	chr2	+	3056	3	FSM	ENSMUSG00000074884.13	ENSMUST00000139253.8	3056	3	0	0	0	0	multi-exon	FALSE	canonical	3	5931	junction_1	722	21144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTTCAGTGAGTCCTGG	NA	False	NA	NA	False	AATAAA	-14	NA	121279675	121283901	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_121279923_121280455_121280565_121281201
transcript_52958.known	chr2	+	525	3	FSM	ENSMUSG00000074884.13	ENSMUST00000099475.12	525	3	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_2	2874	19774	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTGAGCGCCTGGTTTG	NA	False	NA	-3	True	ATTAAA	-14	NA	121279863	121281535	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_121279923_121280455_121280565_121281178
transcript_52959.known	chr2	+	3105	2	FSM	ENSMUSG00000074884.13	ENSMUST00000134412.2	3105	2	0	0	0	0	multi-exon	FALSE	canonical	3	5931	junction_1	0	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATCTGAGCATTCTGGGT	NA	False	NA	3	True	NA	NA	NA	121279848	121283486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_121279923_121280455
transcript_52960.known	chr2	+	724	3	FSM	ENSMUSG00000027245.12	ENSMUST00000131870.2	724	3	0	0	0	0	multi-exon	FALSE	canonical	3	4570	junction_2	83	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTTTTTTTTCTTCAG	NA	False	NA	20	True	AATAAA	-15	NA	121287604	121288787	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_121287773_121288126_121288525_121288629
transcript_52961.known	chr2	-	3362	7	FSM	ENSMUSG00000048222.4	ENSMUST00000056732.4	3362	7	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_3	20.2457128520803	331	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAGTTCCTACTAATCTT	9195	False	NA	NA	False	NA	NA	NA	121304548	121290715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_121292786_121292867_121292958_121295259_121295420_121297216_121297378_121297468_121297578_121300259_121300798_121304314
transcript_52971.known	chr2	-	4198	7	FSM	ENSMUSG00000068479.6	ENSMUST00000089926.6	4198	7	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_6	26.8747093007534	273	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGGCACATGCCCATA	NA	False	NA	NA	False	AATAAA	-19	NA	121337146	121322391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_121325329_121325410_121325501_121327809_121327970_121329766_121329928_121330018_121330128_121332812_121333351_121336943
transcript_52987.nnic	chr2	+	1894	10	NNC	ENSMUSG00000027242.15	novel	2315	11	NA	NA	-37	10	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	16.7648957167965	23	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTTTAAGTTTGCACTGG	NA	False	NA	NA	False	AATAAA	-21	NA	121337166	121363280	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121362686
transcript_52994.nic	chr2	+	843	5	ISM	ENSMUSG00000027242.15	ENSMUST00000132373.2	3155	9	-69	7785	-37	-7209	5prime_fragment	FALSE	canonical	3	42	junction_4	6.13901457890434	86	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTAAGAAGAAATACAAATG	NA	False	NA	NA	False	NA	NA	NA	121337166	121356061	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898_121349955_121355932
transcript_52996.nic	chr2	+	805	5	ISM	ENSMUSG00000027242.15	ENSMUST00000110603.2	2341	13	-52	17429	-52	-7209	5prime_fragment	FALSE	canonical	3	27	junction_1	11.2998893799895	71	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTAAGAAGAAATACAAATG	NA	False	NA	NA	False	NA	NA	NA	121340276	121356061	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_121340417_121341019_121341407_121348185_121348279_121349898_121349955_121355932
transcript_52997.nic	chr2	+	714	4	ISM	ENSMUSG00000027242.15	ENSMUST00000132373.2	3155	9	-69	13892	-37	-13316	5prime_fragment	FALSE	canonical	3	43	junction_1	5.73488351136175	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAAACAGAAGAGGATGTG	NA	False	NA	NA	False	GATAAA	-28	NA	121337166	121349954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898
transcript_52998.nic	chr2	+	1239	4	ISM	ENSMUSG00000027242.15	ENSMUST00000132373.2	3155	9	-69	13367	-37	-12791	5prime_fragment	FALSE	canonical	3	43	junction_1	5.73488351136175	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTAAGGTAGAGTTTCTG	NA	False	NA	NA	False	NA	NA	NA	121337166	121350479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898
transcript_52999.nic	chr2	+	676	4	ISM	ENSMUSG00000027242.15	ENSMUST00000110603.2	2341	13	-52	23536	-52	-13316	5prime_fragment	FALSE	canonical	3	27	junction_1	12.9614813968157	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAAACAGAAGAGGATGTG	NA	False	NA	NA	False	GATAAA	-28	NA	121340276	121349954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_121340417_121341019_121341407_121348185_121348279_121349898
transcript_53.known	ERCC-00109	+	520	1	FSM	ERCC-00109A	DQ854998	520	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	520	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00109_+_0_500
transcript_53000.nic	chr2	+	828	3	ISM	ENSMUSG00000027242.15	ENSMUST00000099473.10	2315	11	-86	14822	-37	-14822	5prime_fragment	FALSE	canonical	3	43	junction_1	7	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGAAACTGAGAGTGAG	NA	False	NA	NA	False	NA	NA	NA	121337166	121348448	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_121337345_121341019_121341407_121348185
transcript_53001.nic	chr2	+	790	3	ISM	ENSMUSG00000027242.15	ENSMUST00000110603.2	2341	13	-52	25042	-52	-14822	5prime_fragment	FALSE	canonical	3	27	junction_1	15	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGAAACTGAGAGTGAG	NA	False	NA	NA	False	NA	NA	NA	121340276	121348448	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_121340417_121341019_121341407_121348185
transcript_53005.known	chr2	-	403	2	FSM	ENSMUSG00000086913.2	ENSMUST00000131514.2	403	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAATACCTTC	NA	False	NA	NA	False	AATAAA	-15	NA	121697198	121696261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_121696550_121697083
transcript_53011.known	chr2	+	3543	13	FSM	ENSMUSG00000033411.17	ENSMUST00000140570.8	3543	13	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	109.645134664314	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGCTCTTTCTCAAAAT	NA	False	NA	11	True	AATAAA	-21	NA	121786960	121843096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_121787099_121799550_121799761_121807815_121807951_121809372_121809523_121811632_121811846_121817429_121817509_121819270_121819383_121823826_121823914_121834381_121834445_121834548_121834629_121837343_121837471_121838201_121838298_121841043
transcript_53018.known	chr2	+	1236	9	FSM	ENSMUSG00000033411.17	ENSMUST00000128883.8	1236	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	138.556621999816	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTCCTTGTTGGTCATTT	NA	False	NA	NA	False	CATAAA	-27	NA	121786966	121824264	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_121787099_121799550_121799761_121807811_121807951_121809372_121809523_121811632_121811846_121817429_121817509_121819270_121819383_121823826_121823914_121824150
transcript_53019.nic	chr2	+	1951	8	ISM	ENSMUSG00000033411.17	ENSMUST00000128883.8	1236	9	-65	-413	10	0	intron_retention	FALSE	canonical	3	361	junction_3	40.3110356085866	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AACAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	121786901	121824677	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_121787099_121799550_121799761_121807811_121807951_121809372_121809523_121811632_121811846_121817429_121817509_121819270_121819383_121823826
transcript_53020.nic	chr2	+	1330	7	ISM	ENSMUSG00000033411.17	ENSMUST00000128883.8	1236	9	-81	4668	-6	-1279	5prime_fragment	FALSE	canonical	3	361	junction_3	40.3429740544194	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGAGACCCTGTGATTT	NA	False	NA	NA	False	AATAAA	-17	NA	121786885	121819596	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_121787099_121799550_121799761_121807811_121807951_121809372_121809523_121811632_121811846_121817429_121817509_121819270
transcript_53021.known	chr2	+	5053	13	FSM	ENSMUSG00000033411.17	ENSMUST00000036647.13	5053	13	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_9	41.0940655353327	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGGGTTTTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	121786481	121844123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_121787099_121799550_121799761_121807811_121807951_121809372_121809523_121811632_121811846_121817429_121817509_121819270_121819383_121823826_121823914_121834381_121834445_121834548_121834629_121837343_121837471_121838201_121838298_121841043
transcript_53028.known	chr2	+	5413	8	FSM	ENSMUSG00000027236.9	ENSMUST00000028668.8	5413	8	0	0	0	0	multi-exon	FALSE	canonical	3	888	junction_1	160.980921673524	1345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTGCTGTCTTTCTCTTTT	NA	False	NA	NA	False	AATAAA	-26	NA	121859026	121887079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_121859206_121859288_121859393_121871636_121871692_121872062_121872155_121877916_121878032_121880967_121881130_121882222_121882297_121882447
transcript_53032.nic	chr2	+	822	7	ISM	ENSMUSG00000027236.9	ENSMUST00000028668.8	5413	8	-41	4783	-41	-4783	5prime_fragment	FALSE	canonical	3	888	junction_1	173.69801380557	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGGAAAGCACGCTCTGA	NA	False	NA	NA	False	AAGAAA	-3	NA	121858985	121882296	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_121859206_121859288_121859393_121871636_121871692_121872062_121872155_121877916_121878032_121880967_121881130_121882222
transcript_53037.known	chr2	-	1813	6	FSM	ENSMUSG00000033396.14	ENSMUST00000135847.2	1813	6	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_3	7.08237248385031	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTGTGTGTCTTAATTT	6990	False	NA	NA	False	NA	NA	NA	121948856	121938146	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_121938967_121939173_121939312_121942196_121942390_121943495_121943721_121945088_121945271_121948601
transcript_53038.nic	chr2	+	416	4	ISM	ENSMUSG00000027236.9	ENSMUST00000028668.8	5413	8	-41	14980	-41	12290	5prime_fragment	FALSE	canonical	3	888	junction_1	218.702740926786	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATAAAAGAGAAAGAACGGC	NA	False	NA	NA	False	AGTAAA	-31	NA	121858985	121872099	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_121859206_121859288_121859393_121871636_121871692_121872062
transcript_5304.known	chr1	-	1558	4	FSM	ENSMUSG00000045259.5	ENSMUST00000061878.5	1558	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	1.88561808316413	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCGAACTGAGGTTCCTTT	7871	False	NA	NA	False	AATAAA	-26	NA	171188366	171186013	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_171186549_171187022_171187222_171187309_171187470_171187702
transcript_53046.known	chr2	+	860	4	FSM	ENSMUSG00000060802.9	ENSMUST00000102476.5	860	4	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_2	12.4721912892465	598	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAATTG	NA	False	NA	NA	False	NA	NA	NA	121978166	121983564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_121978286_121981353_121981633_121982127_121982157_121983131
transcript_53056.known	chr2	+	2115	7	FSM	ENSMUSG00000027229.6	ENSMUST00000028661.6	2115	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	42.3910367884533	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATGTTTCTCAAAGTGAT	1945	False	NA	NA	False	AATAAA	-15	NA	122016752	122036878	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_122016834_122016944_122017027_122018390_122018531_122021087_122021150_122023712_122023787_122028866_122028956_122035291
transcript_53073.nic	chr2	+	869	6	NIC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	-20	310	combination_of_known_junctions	FALSE	canonical	3	28	junction_2	38.5725290848293	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAACTGTAAATGTTTAT	1925	False	NA	NA	False	AATAAA	-14	NA	122016732	122035752	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_122016834_122016944_122017027_122021087_122021150_122023712_122023787_122028866_122028956_122035291
transcript_53076.nic	chr2	+	1995	6	NIC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_2	38.5725290848293	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATGTTTCTCAAAGTGAT	1925	False	NA	NA	False	AATAAA	-15	NA	122016732	122036878	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_122016834_122016944_122017027_122021087_122021150_122023712_122023787_122028866_122028956_122035291
transcript_5309.known	chr1	+	1735	4	FSM	ENSMUSG00000006412.11	ENSMUST00000135941.8	1735	4	0	0	0	0	multi-exon	FALSE	canonical	3	1860	junction_3	112.860779527503	14014	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGGCTCTATTTTTTGT	NA	False	NA	5	True	NA	NA	NA	171173237	171186822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_171173355_171184097_171184187_171184272_171184397_171185417
transcript_53095.nnic	chr2	+	807	5	NIC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	-20	310	combination_of_known_splicesites	FALSE	canonical	3	63	junction_2	27.6450718935582	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAACTGTAAATGTTTAT	1925	False	NA	NA	False	AATAAA	-14	NA	122016732	122035752	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_122016834_122016944_122017027_122023712_122023787_122028866_122028956_122035291
transcript_53098.nnic	chr2	+	1933	5	NIC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	-20	0	combination_of_known_splicesites	FALSE	canonical	3	63	junction_2	27.6450718935582	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATGTTTCTCAAAGTGAT	1925	False	NA	NA	False	AATAAA	-15	NA	122016732	122036878	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_122016834_122016944_122017027_122023712_122023787_122028866_122028956_122035291
transcript_53105.known	chr2	+	448	5	FSM	ENSMUSG00000027229.6	ENSMUST00000149861.2	448	5	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	43.0486643230658	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTACATCTGGACACTTGC	2147	False	NA	NA	False	TATAAA	-34	NA	122016954	122035442	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_122017027_122021087_122021150_122023712_122023787_122028866_122028956_122035291
transcript_5311.known	chr1	+	3245	8	FSM	ENSMUSG00000006411.13	ENSMUST00000094325.5	3245	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.61080955464244	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTGTCTGATTCCTGT	NA	False	NA	NA	False	AATAAA	-12	NA	171197922	171215853	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_171198312_171207685_171208046_171209945_171210237_171211204_171211326_171212251_171212401_171212665_171212820_171213230_171213307_171214148
transcript_53112.nnic	chr2	+	433	4	NNC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	-20	-11232	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	31.5629881700422	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGATGATGAAATATTGAT	1925	False	NA	NA	False	ATTAAA	-6	NA	122016732	122024210	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_122016834_122016944_122017027_122023712_122023787_122024034
transcript_53119.nnic	chr2	+	814	4	NIC	ENSMUSG00000027229.6	novel	448	5	NA	NA	84	310	combination_of_known_splicesites	FALSE	canonical	3	63	junction_1	28.5228952870419	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAACTGTAAATGTTTAT	2029	False	NA	NA	False	AATAAA	-14	NA	122016836	122035752	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_122017027_122023712_122023787_122028866_122028956_122035291
transcript_53122.nnic	chr2	+	1940	4	NIC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	84	0	combination_of_known_splicesites	FALSE	canonical	3	63	junction_1	28.5228952870419	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATGTTTCTCAAAGTGAT	2029	False	NA	NA	False	AATAAA	-15	NA	122016836	122036878	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_122017027_122023712_122023787_122028866_122028956_122035291
transcript_53126.known	chr2	+	399	1	FSM	ENSMUSG00000070692.7	ENSMUST00000117447.2	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1174	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATTTTGGCTGATTAAA	NA	False	NA	-21	True	AAGAAA	-4	NA	122050473	122050872	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_122050500_122050900
transcript_53129.known	chr2	+	2352	9	FSM	ENSMUSG00000027227.8	ENSMUST00000110551.4	2352	9	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_3	10.5763592507063	375	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGTATGTGGTTTGTGCCT	NA	False	NA	16	True	AATAAA	-19	NA	122065229	122095821	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_122065440_122076962_122076997_122079279_122079445_122083667_122083828_122087322_122087442_122089545_122089612_122090660_122090837_122093668_122093791_122094521
transcript_53130.nnic	chr2	-	1376	6	NNC	ENSMUSG00000033256.15	novel	1566	6	NA	NA	-1043	0	at_least_one_novel_splicesite	TRUE	canonical	3	5	junction_5	49.9199358973947	103	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCCCCGCCCCAGTCAG	NA	False	NA	21	True	NA	NA	NA	122200686	122179608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_122180021_122184245_122184366_122184509_122184679_122187563_122187771_122189928_122190071_122200360
transcript_53133.nnic	chr2	-	1152	6	NNC	ENSMUSG00000033256.15	novel	1539	6	NA	NA	-1053	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_5	54.17896270694	103	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCCCCGCCCCAGTCAG	NA	False	NA	21	True	NA	NA	NA	122200696	122179608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_122180021_122184245_122184366_122184511_122184679_122187563_122187771_122189928_122190071_122200592
transcript_53136.known	chr2	-	2389	9	FSM	ENSMUSG00000027199.15	ENSMUST00000028624.9	2389	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	2.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTTGATTTCTGTCTCA	NA	False	NA	NA	False	AATAAA	-26	NA	122441784	122424947	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_122426091_122427852_122427970_122428617_122428682_122430859_122431025_122431172_122431311_122432985_122433177_122434062_122434259_122440149_122440369_122441628
transcript_53138.known	chr2	+	2347	8	FSM	ENSMUSG00000118663.1	ENSMUST00000239506.1	2347	8	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	2.6954231805876	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGGAGAAGGGAGAGGTC	NA	False	NA	NA	False	NA	NA	NA	122461119	122474750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_122462241_122462999_122463186_122466452_122466612_122469669_122469880_122471036_122471230_122472613_122472745_122473758_122473885_122474529
transcript_53139.nic	chr2	+	768	4	ISM	ENSMUSG00000118663.1	ENSMUST00000239506.1	2347	8	10003	-183	9977	183	3prime_fragment	FALSE	canonical	3	9	junction_1	1.24721912892465	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTCAGGAGAGTTATTT	NA	False	NA	21	True	AATAAA	-17	NA	122471122	122474933	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_122471230_122472613_122472745_122473758_122473885_122474529
transcript_5314.known	chr1	+	4494	12	FSM	ENSMUSG00000048865.17	ENSMUST00000056449.9	4494	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	11.0123897167112	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTATGTACTTTGTCTT	2492	False	NA	NA	False	AATAAA	-28	NA	171216521	171237808	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_171216932_171225042_171225146_171228123_171228269_171229492_171229576_171229724_171229833_171230780_171230909_171231348_171231524_171231601_171231706_171231788_171231867_171232377_171232747_171234925_171235204_171235295
transcript_53141.known	chr2	+	792	5	FSM	ENSMUSG00000033213.17	ENSMUST00000047498.15	792	5	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_4	21.9146070008111	1186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATCAAATGCAGATTTCTAA	NA	False	NA	NA	False	TATAAA	-16	NA	122479769	122483111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_122479862_122479991_122480054_122480176_122480263_122481135_122481197_122482620
transcript_53142.known	chr2	+	751	4	FSM	ENSMUSG00000033213.17	ENSMUST00000110512.4	751	4	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_3	25.0377492776186	748	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGATTTGTGCAAGAGATA	NA	False	NA	23	True	AATAAA	-25	NA	122479834	122483005	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_122480054_122480176_122480263_122481135_122481197_122482620
transcript_53144.known	chr2	+	2088	5	FSM	ENSMUSG00000005804.15	ENSMUST00000148460.8	2088	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	54.4443523241851	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAAGGCTGGCGATTCTTTT	8285	False	NA	4	True	AATAAA	-16	NA	122580438	122590019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_122580625_122584508_122584651_122586049_122586134_122587974_122588062_122588430
transcript_53146.known	chr2	+	1108	5	FSM	ENSMUSG00000005804.15	ENSMUST00000129690.2	1108	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	59.2088464673988	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGCTGCTGAGCTTTTAT	8325	False	NA	NA	False	TTTAAA	-39	NA	122580478	122588926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_122580774_122584508_122584651_122586045_122586134_122587974_122588062_122588430
transcript_53151.known	chr2	-	2928	15	FSM	ENSMUSG00000027201.17	ENSMUST00000147105.8	2928	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	219.217253156846	199	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACAGCTTACTTGTTGCTT	NA	False	NA	-9	True	NA	NA	NA	124965581	124929661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_124930958_124937627_124937680_124937831_124938041_124939896_124939996_124940369_124940439_124942238_124942341_124950875_124950940_124951073_124951124_124951589_124951744_124952399_124952592_124955768_124955863_124955962_124955971_124957357_124957411_124958584_124958794_124965304
transcript_53152.known	chr2	+	1954	9	FSM	ENSMUSG00000035183.15	ENSMUST00000070353.4	1954	9	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_6	24.0624188310319	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	124910043	124930597	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_124910222_124910691_124910872_124922540_124922625_124922713_124922818_124923146_124923248_124924950_124925235_124927576_124927784_124929339_124929442_124929883
transcript_53161.known	chr2	+	1950	6	FSM	ENSMUSG00000027203.16	ENSMUST00000051605.9	1950	6	0	0	0	0	multi-exon	TRUE	canonical	3	2160	junction_3	102.069780052668	7639	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAGTATATGTTTTAAGG	NA	False	NA	117	True	ATTAAA	-18	NA	125089401	125100528	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_125089817_125091085_125091178_125092892_125092938_125098768_125098844_125098989_125099061_125099276
transcript_53162.known	chr2	-	5768	28	FSM	ENSMUSG00000068394.5	ENSMUST00000089776.3	5768	28	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_22	10.571073713266	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTGTCATGACTTATTTT	NA	False	NA	0	True	AATAAA	-18	NA	125467033	125405007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_125406318_125408128_125408242_125408452_125408610_125410743_125410848_125411474_125411572_125413588_125413754_125418633_125418776_125421293_125421945_125423615_125423748_125425711_125425985_125428250_125428395_125429520_125429648_125429812_125429942_125431375_125431486_125432029_125432153_125436792_125436992_125443068_125443233_125444761_125444854_125447255_125447404_125452927_125453129_125454856_125454997_125456207_125456352_125460292_125460462_125461585_125461811_125461916_125461990_125462206_125462311_125463092_125463187_125466795
transcript_53163.known	chr2	+	1691	1	FSM	ENSMUSG00000091337.4	ENSMUST00000164756.4	1691	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCTTTGTCTAATAGCT	NA	False	NA	18	True	AATAAA	-18	NA	125515014	125516705	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_125515000_125516700
transcript_53164.known	chr2	-	6797	18	FSM	ENSMUSG00000035093.17	ENSMUST00000053699.13	6797	18	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_6	11.6758408483317	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTGTTCTTTTTCTAT	304	False	NA	NA	False	AATAAA	-36	NA	125624790	125578905	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_125582838_125585733_125585954_125587716_125587872_125589304_125589526_125592198_125592362_125593648_125593782_125594733_125594901_125599113_125599256_125599351_125599520_125600085_125600167_125602191_125602327_125609294_125609411_125609728_125609754_125610026_125610254_125613328_125613465_125615095_125615421_125617472_125617652_125624518
transcript_53167.known	chr2	+	2605	10	FSM	ENSMUSG00000027207.16	ENSMUST00000028636.13	2605	10	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	32.0916896284673	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTTCATCTGCCTGTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	125701053	125826219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_125701298_125720197_125720287_125729783_125729908_125735272_125735364_125738564_125738712_125771480_125771580_125773172_125773326_125788703_125788915_125817179_125817382_125824974
transcript_53170.known	chr2	+	1928	10	FSM	ENSMUSG00000027207.16	ENSMUST00000094604.9	1928	10	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_4	15.4040238449986	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGTTGCTCTTGAATG	NA	False	NA	8	True	ATTAAA	-15	NA	125708026	125825507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_125708306_125720197_125720287_125729783_125729908_125735272_125735364_125738564_125738712_125771480_125771580_125773172_125773326_125788703_125788915_125817179_125817382_125824974
transcript_53173.nnic	chr2	+	1519	9	NNC	ENSMUSG00000027207.16	novel	1928	10	NA	NA	-43	2961	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	33.8895264056611	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTCTGTCACCCCAACTGT	NA	False	NA	NA	False	AATAAA	-19	NA	125708119	125792231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_125708306_125720197_125720287_125729783_125729908_125735272_125735364_125738564_125738712_125771480_125771580_125773172_125773326_125788703_125788915_125791812
transcript_53179.known	chr2	+	1388	8	FSM	ENSMUSG00000027207.16	ENSMUST00000110454.2	1388	8	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_4	8.76449237153027	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGAAAGTCTTTACTGCC	NA	False	NA	NA	False	NA	NA	NA	125708187	125789270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_125708306_125720197_125720287_125729783_125729908_125735272_125735364_125738564_125738712_125771480_125771580_125773172_125773326_125788703
transcript_53180.known	chr2	-	3392	13	FSM	ENSMUSG00000027206.14	ENSMUST00000110463.8	3392	13	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_9	189.484534695813	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCAGGTGTGTGCATGTGA	NA	False	NA	-4	True	AATAAA	-22	NA	125701059	125672223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684653_125686729_125686856_125690126_125690205_125691659_125691774_125700855
transcript_53181.known	chr2	-	2073	13	FSM	ENSMUSG00000027206.14	ENSMUST00000028635.6	2073	13	0	0	0	0	multi-exon	FALSE	canonical	3	620	junction_9	116.017838666685	1089	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTTGGTTCTTGATGTG	NA	False	NA	NA	False	AATAAA	-19	NA	125701059	125673521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684632_125686729_125686856_125690126_125690205_125691659_125691774_125700855
transcript_53183.known	chr2	+	1342	5	FSM	ENSMUSG00000023330.13	ENSMUST00000170908.8	1342	5	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_1	15.4495145554804	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTCGCCCTTACCTTTCG	7279	False	NA	25	True	ATTAAA	-23	NA	125994060	126007196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_125994135_125996465_125996781_126000329_126000474_126001689_126001949_126006646
transcript_53185.nnic	chr2	+	1672	5	NNC	ENSMUSG00000023330.13	novel	1342	5	NA	NA	33	0	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	62.1867148191637	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTCGCCCTTACCTTTCG	7312	False	NA	25	True	ATTAAA	-23	NA	125994093	126007196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_125994498_125996465_125996781_126000329_126000474_126001689_126001949_126006646
transcript_53188.nnic	chr2	+	1213	4	NIC	ENSMUSG00000023330.13	novel	1342	5	NA	NA	-15	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_2	74.5534856477028	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTCGCCCTTACCTTTCG	7264	False	NA	25	True	ATTAAA	-23	NA	125994045	126007196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_125994135_125996465_125996781_126001689_126001949_126006646
transcript_53190.known	chr2	+	1276	4	FSM	ENSMUSG00000023330.13	ENSMUST00000110437.4	1276	4	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_3	13.6381816969859	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGCCCTTACCTTTCGACT	9679	False	NA	28	True	ATTAAA	-26	NA	125996460	126007199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_125996781_126000329_126000474_126001689_126001949_126006646
transcript_53191.known	chr2	+	2918	10	FSM	ENSMUSG00000027359.17	ENSMUST00000061491.14	2918	10	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_5	10.1592261783666	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACGAGGCTTCGCTGTCT	NA	False	NA	16	True	AATAAA	-16	NA	126394326	126430163	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_126395553_126403456_126403667_126406597_126406757_126409666_126409792_126416621_126416817_126419779_126419871_126420768_126420968_126422825_126422924_126428171_126428303_126429679
transcript_53193.known	chr2	-	2751	10	FSM	ENSMUSG00000027361.16	ENSMUST00000103227.8	2751	10	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_9	168.845754725693	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGCTCCATGCAGACTCAT	NA	False	NA	-12	True	ATTAAA	-12	NA	126517464	126470834	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_126472303_126481148_126481265_126488482_126488666_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126504910_126505009_126517275
transcript_53199.known	chr2	-	1991	9	FSM	ENSMUSG00000027361.16	ENSMUST00000039978.13	1991	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	181.486182325267	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGATTTATAATGTCTCTT	NA	False	NA	NA	False	AATAAA	-10	NA	126518257	126480555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_126481265_126488482_126488666_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126504910_126505009_126517953
transcript_5320.known	chr1	+	1115	10	FSM	ENSMUSG00000026641.14	ENSMUST00000001284.13	1115	10	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	49.4805111903093	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGGGACTCAGGGGCTT	6737	False	NA	NA	False	NA	NA	NA	171238880	171245689	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_171239009_171242004_171242098_171243072_171243123_171243282_171243368_171243702_171243805_171244377_171244574_171244809_171244898_171245040_171245100_171245208_171245433_171245599
transcript_53202.known	chr2	-	2613	9	FSM	ENSMUSG00000027361.16	ENSMUST00000110424.9	2613	9	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	121.804595048791	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCCATGCAGACTCATGT	NA	False	NA	-10	True	ATTAAA	-14	NA	126517422	126470832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_126472303_126481148_126481265_126488482_126488666_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126517275
transcript_53203.known	chr2	-	1338	8	FSM	ENSMUSG00000027361.16	ENSMUST00000103226.10	1338	8	0	0	0	0	multi-exon	FALSE	canonical	3	353	junction_7	27.2074419591255	627	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATTGAATGAGTGCAGA	NA	False	NA	-17	True	NA	NA	NA	126517406	126480940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_126481265_126488482_126488669_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126517275
transcript_53204.known	chr2	+	4145	19	FSM	ENSMUSG00000027363.16	ENSMUST00000028841.14	4145	19	0	0	0	0	multi-exon	TRUE	canonical	3	323	junction_9	42.2163738639668	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTGAAACCTTGTACAT	3576	False	NA	6	True	ATTAAA	-20	NA	126549262	126601217	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_126549408_126559914_126560085_126561944_126562090_126567264_126567351_126571079_126571243_126573980_126574024_126575879_126576025_126578268_126578432_126579330_126579476_126579778_126580003_126584043_126584602_126589415_126589497_126590105_126590369_126592899_126593113_126594191_126594403_126596768_126597006_126597892_126598036_126600039_126600173_126600340
transcript_5321.known	chr1	+	2167	10	FSM	ENSMUSG00000026641.14	ENSMUST00000161241.8	2167	10	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_1	10.3363197596069	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACCCCCTGGATGTGAGG	6737	False	NA	NA	False	NA	NA	NA	171238880	171246710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_171239009_171242004_171242098_171243072_171243123_171243282_171243399_171243702_171243805_171244377_171244574_171244809_171244898_171245040_171245100_171245208_171245433_171245599
transcript_53210.nnic	chr2	-	1163	3	NNC	ENSMUSG00000027364.15	novel	980	4	NA	NA	2949	399	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	5.5	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTGGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	126622409	126619209	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_126620029_126621850_126622047_126622261
transcript_53211.nic	chr2	-	1548	3	ISM	ENSMUSG00000027364.15	ENSMUST00000151140.2	980	4	2538	-399	2518	399	3prime_fragment	FALSE	canonical	3	8	junction_2	2	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTGGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	126622840	126619209	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_126620029_126621850_126622047_126622307
transcript_53212.nic	chr2	+	424	2	ISM	ENSMUSG00000027363.16	ENSMUST00000138859.2	3463	17	-3	40993	-3	-40993	5prime_fragment	FALSE	canonical	3	389	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATGTGATCACAAGAGTAA	3558	False	NA	NA	False	AATAAA	-28	NA	126549244	126560175	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_126549408_126559914
transcript_53213.nic	chr2	+	508	2	ISM	ENSMUSG00000027363.16	ENSMUST00000138859.2	3463	17	-3	40909	-3	-40909	5prime_fragment	FALSE	canonical	3	389	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACCTGCTTCCTGACCAGT	3558	False	NA	NA	False	AATAAA	-22	NA	126549244	126560259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_126549408_126559914
transcript_53216.nic	chr2	-	2009	15	ISM	ENSMUSG00000027365.15	ENSMUST00000103224.10	7107	39	-32	38611	-32	665	5prime_fragment	FALSE	canonical	3	201	junction_9	21.566697683688	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGACACAATCATTTCATT	NA	False	NA	NA	False	GATAAA	-11	NA	126718182	126672095	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_126672184_126673116_126673258_126675607_126675662_126677375_126677511_126679254_126679356_126682663_126682737_126684775_126684900_126686219_126686395_126687993_126688166_126690416_126690542_126691818_126692033_126693262_126693462_126696562_126696602_126700332_126700413_126717893
transcript_53217.nic	chr2	-	1411	9	ISM	ENSMUSG00000027365.15	ENSMUST00000134408.2	2201	14	-76	12021	-32	-12018	5prime_fragment	FALSE	canonical	3	201	junction_3	25.5804490773716	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTTGTGAGTAGAGTTCA	NA	False	NA	NA	False	NA	NA	NA	126718182	126684781	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_126684900_126686219_126686395_126687993_126688166_126690416_126690542_126691818_126692033_126693262_126693462_126696562_126696602_126700332_126700413_126717893
transcript_53220.known	chr2	-	7107	39	FSM	ENSMUSG00000027365.15	ENSMUST00000103224.10	7107	39	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_33	52.8048791605273	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTAATGAGTTTACTC	NA	False	NA	-16	True	ATTAAA	-35	NA	126718150	126633484	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_126634877_126637151_126637259_126637362_126637415_126639030_126639237_126639386_126639470_126639581_126639866_126641088_126641155_126641232_126641284_126643042_126643069_126644505_126644541_126646936_126647008_126649208_126649300_126652082_126652151_126654615_126655329_126656607_126656741_126658679_126658865_126661756_126661884_126663083_126663259_126664389_126664669_126665895_126666025_126667331_126667476_126667553_126667710_126668634_126668864_126670929_126671211_126672048_126672184_126673116_126673258_126675607_126675662_126677375_126677511_126679254_126679356_126682663_126682737_126684775_126684900_126686219_126686395_126687993_126688166_126690416_126690542_126691818_126692033_126693262_126693462_126696562_126696602_126700332_126700413_126717893
transcript_53223.known	chr2	-	5616	15	FSM	ENSMUSG00000027366.13	ENSMUST00000028844.11	5616	15	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	6.77630927178938	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTGTATTCTTTTGTA	8279	False	NA	NA	False	AATAAA	-21	NA	126775155	126732310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_126736207_126746829_126746991_126750025_126750101_126754562_126754666_126755451_126755509_126759130_126759206_126759719_126759802_126761558_126761661_126762237_126762335_126765375_126765528_126767665_126767800_126768207_126768298_126768736_126768920_126769668_126769789_126774866
transcript_53238.known	chr2	+	772	7	FSM	ENSMUSG00000001999.16	ENSMUST00000135529.8	772	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	86.9284507831329	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCTGCTGTGCCCACTG	2223	False	NA	NA	False	NA	NA	NA	126912598	126932269	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_126912651_126920849_126920998_126922449_126922579_126924851_126924971_126927882_126928003_126928764_126928863_126932163
transcript_5324.known	chr1	+	551	4	FSM	ENSMUSG00000103711.2	ENSMUST00000171362.2	551	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	12.7279220613579	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAGTTGTATTTAATTTG	NA	False	NA	NA	False	AATAAA	-18	NA	171246600	171247920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_171246704_171246905_171247029_171247505_171247669_171247758
transcript_53245.known	chr2	+	1160	8	FSM	ENSMUSG00000001999.16	ENSMUST00000002064.15	1160	8	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	50.5988626152721	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGAATAGTGTTGATGACT	2211	False	NA	NA	False	AATAAA	-20	NA	126912586	126939004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_126912651_126922449_126922579_126924851_126924971_126927882_126928003_126928764_126928863_126933958_126934067_126937005_126937178_126938654
transcript_53246.known	chr2	+	1460	5	FSM	ENSMUSG00000001999.16	ENSMUST00000142861.2	1460	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	50.701947694344	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGAAAAAAAAAAAAAAGAGG	2209	False	NA	NA	False	AAAAAG	-43	NA	126912584	126929790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_126912651_126922449_126922579_126924851_126924971_126927882_126928003_126928764
transcript_53248.known	chr2	-	2695	18	FSM	ENSMUSG00000034906.16	ENSMUST00000110387.4	2695	18	0	0	0	0	multi-exon	TRUE	canonical	3	394	junction_9	30.9044738701424	416	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTCAGTATTAGCGTCACA	NA	False	NA	13	True	AATAAA	-34	NA	126975874	126945728	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_126946201_126947765_126947842_126948023_126948116_126949273_126949391_126950404_126950579_126955479_126955591_126958451_126958575_126959425_126959533_126959996_126960146_126963044_126963248_126963959_126964052_126965456_126965647_126966750_126966876_126967470_126967607_126968034_126968128_126969023_126969115_126969404_126969643_126975768
transcript_53249.known	chr2	-	3424	3	FSM	ENSMUSG00000074825.5	ENSMUST00000132773.2	3424	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGAACTGGAATCTGTTC	NA	False	NA	-11	True	AATAAA	-22	NA	126985362	126980691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_126983647_126983893_126984135_126985134
transcript_5325.known	chr1	+	543	2	FSM	ENSMUSG00000103711.2	ENSMUST00000194029.2	543	2	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGAGTTGTATTTAATTT	NA	False	NA	NA	False	AATAAA	-17	NA	171247286	171247919	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_171247669_171247758
transcript_53250.known	chr2	-	2364	2	FSM	ENSMUSG00000044145.3	ENSMUST00000150956.2	2364	2	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAACACAATGCTCAGCTT	NA	False	NA	NA	False	NA	NA	NA	127050174	127044486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_127046771_127050094
transcript_53255.known	chr2	+	6745	45	FSM	ENSMUSG00000003660.11	ENSMUST00000103220.4	6745	45	0	0	0	0	multi-exon	FALSE	canonical	3	516	junction_16	102.022451345341	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTCCTTAACAGTGATAC	NA	False	NA	15	True	AATAAA	-17	NA	127050318	127082371	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_127050459_127050893_127051058_127052613_127052786_127053519_127053713_127054268_127054325_127056726_127056826_127057968_127058122_127058273_127058374_127058532_127058670_127059148_127059233_127059311_127059486_127059792_127059931_127060272_127060429_127060948_127061120_127063664_127063859_127064050_127064175_127066500_127066651_127067002_127067114_127067925_127068058_127068214_127068404_127068864_127069063_127069796_127069950_127070064_127070146_127070461_127070546_127070978_127071086_127071405_127071525_127071805_127071961_127072053_127072244_127072433_127072608_127073606_127073768_127074325_127074554_127074820_127075013_127075099_127075279_127075419_127075572_127076883_127076993_127077879_127077989_127078378_127078569_127078659_127078825_127079380_127079503_127079742_127079887_127079978_127080156_127080419_127080581_127080658_127080741_127081798_127081892_127081988
transcript_53257.known	chr2	-	3075	7	FSM	ENSMUSG00000003662.11	ENSMUST00000003759.11	3075	7	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_2	19.7793382655291	673	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGCTTTTAGTTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	127089736	127082857	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_127084958_127086832_127086921_127087642_127087845_127088332_127088422_127088521_127088634_127088929_127089079_127089401
transcript_53258.known	chr2	+	4811	4	FSM	ENSMUSG00000034850.16	ENSMUST00000035871.15	4811	4	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	34.6634613902818	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTTTCCGGTCTACTCT	2334	False	NA	10	True	AATAAA	-15	NA	127089827	127103027	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_127090005_127090411_127090730_127097924_127098090_127098876
transcript_53259.known	chr2	-	606	1	FSM	ENSMUSG00000103957.2	ENSMUST00000194123.2	606	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAACAGTGTGTCTCAAATA	NA	False	NA	NA	False	NA	NA	NA	127111974	127111368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_127111400_127112000
transcript_5326.known	chr1	+	2518	10	FSM	ENSMUSG00000038235.5	ENSMUST00000043839.5	2518	10	0	0	0	0	multi-exon	FALSE	canonical	1	67	junction_8	70.6616000978966	636	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTATGTTTTTTTTT	NA	False	NA	23	True	ATTAAA	-23	NA	171265102	171292171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_171265270_171287930_171288000_171288105_171288214_171288396_171288544_171288768_171288975_171289130_171289234_171289372_171289481_171290170_171290184_171290456_171290509_171290626
transcript_53260.known	chr2	+	3116	8	FSM	ENSMUSG00000027367.17	ENSMUST00000110375.9	3116	8	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_5	27.592515992122	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAAGAGTGTTCATTTCT	NA	False	NA	9	True	AATAAA	-16	NA	127112148	127140852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_127112801_127126014_127126224_127126451_127126502_127132691_127132803_127132877_127132961_127134070_127134171_127137403_127137489_127139026
transcript_53263.known	chr2	+	2628	22	FSM	ENSMUSG00000046338.5	ENSMUST00000062211.4	2628	22	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	53.4925768898164	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGAAGTACATGTCCAAT	5001	False	NA	14	True	AATAAA	-25	NA	127267118	127278012	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_127267142_127269160_127269292_127269412_127269527_127270165_127270240_127270604_127270710_127270916_127271046_127272774_127272875_127273202_127273337_127273582_127273683_127273777_127273991_127274291_127274415_127274569_127274653_127274891_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
transcript_53265.nnic	chr2	+	2615	22	NNC	ENSMUSG00000046338.5	novel	2628	22	NA	NA	-49	0	at_least_one_novel_splicesite	TRUE	canonical	2	10	junction_1	54.5121842462079	163	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGAAGTACATGTCCAAT	4952	False	NA	14	True	AATAAA	-25	NA	127267069	127278012	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_127267142_127269222_127269292_127269412_127269527_127270165_127270240_127270604_127270710_127270916_127271046_127272774_127272875_127273202_127273337_127273582_127273683_127273777_127273991_127274291_127274415_127274569_127274653_127274891_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
transcript_53279.known	chr2	-	1211	8	FSM	ENSMUSG00000027371.11	ENSMUST00000028848.4	1211	8	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_6	10.321366781822	615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTAGCTTCCACTGTCTTT	NA	False	NA	-4	True	AATAAA	-19	NA	127286470	127278134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_127278327_127278465_127278554_127278656_127278766_127280032_127280193_127280429_127280490_127282305_127282523_127283793_127284045_127286336
transcript_53280.known	chr2	-	1462	7	FSM	ENSMUSG00000027371.11	ENSMUST00000146757.8	1462	7	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_5	9.94428926011753	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTAGCTTCCACTGTCTT	NA	False	NA	-5	True	AATAAA	-18	NA	127286485	127278135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_127278327_127278465_127278554_127278656_127278766_127280032_127280490_127282305_127282523_127283793_127284045_127286336
transcript_53281.known	chr2	-	2728	9	FSM	ENSMUSG00000079056.13	ENSMUST00000028850.15	2728	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	31.0161248385416	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGACTCTCTCCAGCTTC	NA	False	NA	1	True	AATAAA	-18	NA	127363290	127298417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_127300309_127301249_127301313_127301902_127302008_127302352_127302461_127306967_127307039_127307268_127307339_127307773_127307895_127352748_127352915_127363157
transcript_53282.known	chr2	-	2732	9	FSM	ENSMUSG00000079056.13	ENSMUST00000103215.11	2732	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	30.8015320235861	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGACTCTCTCCAGCTTC	NA	False	NA	1	True	AATAAA	-18	NA	127363290	127298417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_127300309_127301249_127301313_127301902_127302008_127302352_127302461_127306967_127307039_127307268_127307339_127307773_127307899_127352748_127352915_127363157
transcript_53283.known	chr2	-	1296	8	FSM	ENSMUSG00000079056.13	ENSMUST00000088538.6	1296	8	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	5.52175659716791	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACATGGTTCCTCTGGCTTG	9628	False	NA	99	True	NA	NA	NA	127324419	127300049	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_127300309_127301249_127301313_127301902_127302008_127302352_127302461_127306967_127307039_127307268_127307339_127307773_127307899_127323924
transcript_53285.known	chr2	-	2981	6	FSM	ENSMUSG00000034800.16	ENSMUST00000110368.9	2981	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	12.1983605455815	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGAAGTGTCTCTATTCA	NA	False	NA	-19	True	NA	NA	NA	127426589	127417452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_127419865_127420523_127420638_127422816_127422944_127423395_127423467_127423778_127423996_127426549
transcript_53286.known	chr2	-	2765	5	FSM	ENSMUSG00000034800.16	ENSMUST00000077422.12	2765	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	7.11951543294907	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAATACTGAAGTGTCT	NA	False	NA	-26	True	NA	NA	NA	127426597	127417459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_127419865_127420523_127420638_127422816_127422944_127423395_127423467_127426549
transcript_53293.known	chr2	+	4481	12	FSM	ENSMUSG00000027374.13	ENSMUST00000028852.13	4481	12	0	0	0	0	multi-exon	FALSE	canonical	3	1110	junction_4	149.07045314213	2652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTTCCAATAACTTGGC	3967	False	NA	7	True	AATAAA	-18	NA	127429141	127448749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436490_127437583_127437818_127438819_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
transcript_53312.known	chr2	+	812	5	FSM	ENSMUSG00000027374.13	ENSMUST00000134101.8	812	5	0	0	0	0	multi-exon	FALSE	canonical	3	1110	junction_4	81.6160982894919	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAACTGCATCATAGAAAAC	4164	False	NA	NA	False	AATAAA	-15	NA	127429338	127437977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436490_127437583
transcript_53315.known	chr2	+	424	5	FSM	ENSMUSG00000027374.13	ENSMUST00000146131.2	424	5	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	501.728512245417	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCCTCTGATAAAAAGTGG	7186	False	NA	NA	False	TTTAAA	-40	NA	127432360	127437615	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_127432402_127432614_127432702_127433733_127433872_127436363_127436490_127437583
transcript_53322.known	chr2	-	2778	4	FSM	ENSMUSG00000027375.15	ENSMUST00000028854.15	2778	4	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_3	8.83176086632785	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGTCTCACTCTTTTGT	NA	False	NA	-2	True	ATTAAA	-17	NA	127498615	127475145	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_127476975_127480508_127480635_127482140_127482309_127497960
transcript_53325.known	chr2	-	486	3	FSM	ENSMUSG00000027375.15	ENSMUST00000028853.7	486	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	55.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAACAAAACAAAC	NA	False	NA	-52	True	NA	NA	NA	127498139	127476793	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_127476975_127480508_127480635_127497960
transcript_53329.known	chr2	-	2006	4	FSM	ENSMUSG00000027377.3	ENSMUST00000028856.3	2006	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	4.54606056566195	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGAGTCTATCGCTTTG	NA	False	NA	2	True	AATAAA	-21	NA	127571852	127546305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_127547844_127550756_127550880_127554188_127554357_127571675
transcript_5333.known	chr1	+	1273	1	FSM	ENSMUSG00000060244.2	ENSMUST00000081527.2	1273	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAACCTTGCCTTTGATG	1407	False	NA	NA	False	AATAAA	-11	NA	171331045	171332318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_171331000_171332300
transcript_53330.known	chr2	-	2296	20	FSM	ENSMUSG00000027378.17	ENSMUST00000110357.2	2296	20	0	0	0	0	multi-exon	TRUE	canonical	3	41	junction_11	13.7437973922422	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTGTTATATCTAAATT	2791	False	NA	0	True	AATAAA	-16	NA	127630817	127582655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_127583109_127584991_127585037_127587815_127587890_127589919_127590033_127595892_127595993_127598011_127598089_127599598_127599682_127601495_127601607_127603081_127603157_127605698_127605828_127607943_127608039_127610090_127610179_127611534_127611578_127612178_127612313_127614020_127614123_127615817_127616020_127619188_127619314_127621023_127621085_127621982_127622057_127630705
transcript_53335.known	chr2	-	631	3	FSM	ENSMUSG00000027378.17	ENSMUST00000144938.2	631	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	38.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTGTTATATCTAAATTTT	683	False	NA	2	True	AATAAA	-18	NA	127586467	127582653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_127583109_127584991_127585037_127586336
transcript_53336.known	chr2	-	800	2	FSM	ENSMUSG00000051319.7	ENSMUST00000135091.2	800	2	0	0	0	0	multi-exon	FALSE	canonical	3	537	junction_1	0	2906	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGACCAAAGCCTTGGTT	NA	False	NA	-5	True	GATAAA	-14	NA	127634408	127633307	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_127633753_127634053
transcript_53339.known	chr2	-	3421	25	FSM	ENSMUSG00000027379.15	ENSMUST00000028858.9	3418	25	0	-3	0	3	multi-exon	TRUE	canonical	0	0	junction_18	145.15221297161	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGACCTAGTTGTTCTAA	NA	False	NA	-5	True	AATAAA	-18	NA	127673785	127643041	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659399_127661132_127661285_127663594_127663780_127663861_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671597_127671658_127673639
transcript_53342.nic	chr2	-	1029	8	ISM	ENSMUSG00000027379.15	ENSMUST00000028858.9	3418	25	-31	20477	-31	1846	5prime_fragment	FALSE	canonical	0	0	junction_1	238.0197213575	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAGATGCCTTGAGCTCA	NA	False	NA	NA	False	AATGAA	-2	NA	127673816	127663521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_127663780_127663861_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671597_127671658_127673639
transcript_53343.nic	chr2	-	1392	4	ISM	ENSMUSG00000027379.15	ENSMUST00000133943.2	1137	6	-92	3034	-31	-3034	5prime_fragment	FALSE	canonical	3	663	junction_3	25.9015229067499	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGTATTTAATAAAATGTT	NA	False	NA	NA	False	AGTAAA	-17	NA	127673816	127668401	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_127669418_127671357_127671497_127671597_127671658_127673639
transcript_53346.known	chr2	+	3538	5	FSM	ENSMUSG00000027381.17	ENSMUST00000103210.2	3538	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	9.78199877325692	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAATCACTG	NA	False	NA	NA	False	CATAAA	-5	NA	127967969	128003148	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_127968173_127970539_127970677_127970844_127970935_127989004_127989115_128000150
transcript_53348.known	chr2	+	5036	4	FSM	ENSMUSG00000027381.17	ENSMUST00000110341.9	5036	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	11.2644968324772	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACTGTTCGATGTGTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	127967958	128004467	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_127968173_127970539_127970935_127989004_127989115_128000150
transcript_53352.known	chr2	-	3309	3	FSM	ENSMUSG00000074813.15	ENSMUST00000239198.2	3309	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	128271783	128140582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_128142917_128172764_128172970_128271013
transcript_53354.known	chr2	-	682	3	FSM	ENSMUSG00000074813.15	ENSMUST00000239374.2	682	3	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	3.5	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAATTGTCTGTTTCTTAG	NA	False	NA	NA	False	ATTAAA	-18	NA	128271509	128214025	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_128214348_128271013_128271092_128271227
transcript_53355.nnic	chr2	-	557	3	NNC	ENSMUSG00000074813.15	novel	1413	7	NA	NA	-59	-41336	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTGTTGTTGTTGTT	NA	False	NA	NA	False	TTTAAA	-21	NA	128271406	128255370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_128255671_128271013_128271092_128271227
transcript_53358.known	chr2	-	8942	48	FSM	ENSMUSG00000014355.11	ENSMUST00000014499.10	8942	48	0	0	0	0	multi-exon	FALSE	canonical	3	297	junction_42	39.2671319365267	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGGACTTTAGCAATGTCA	NA	False	NA	-22	True	NA	NA	NA	128529311	128452023	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_128454984_128457289_128457425_128459473_128459673_128461173_128461270_128461813_128461901_128464292_128464432_128465415_128465484_128465797_128465876_128466777_128466896_128469040_128469128_128470416_128470611_128471436_128471491_128471599_128471691_128472147_128472225_128474517_128474593_128475256_128475336_128476352_128476436_128476557_128476693_128479027_128479120_128483261_128483497_128484365_128484638_128487053_128487173_128490224_128490440_128492115_128492295_128494615_128494687_128494771_128494809_128495086_128495166_128499045_128499195_128500167_128500260_128501656_128501926_128502724_128502800_128505794_128505983_128507367_128507429_128508484_128508626_128510844_128510980_128511569_128511636_128511742_128511834_128513981_128514078_128516470_128516681_128517590_128517812_128518021_128518168_128520130_128520205_128521439_128521523_128522028_128522130_128522313_128522366_128526421_128526584_128527743_128527981_128529072
transcript_5336.nnic	chr1	+	788	7	NNC	ENSMUSG00000015314.11	novel	5729	9	NA	NA	-5198	100	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0.897527467855751	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTTCTGTGATTTCTTT	2052	False	NA	NA	False	AATAAA	-15	NA	171764997	171776525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_171765153_171765568_171765683_171766018_171766049_171766962_171767037_171769191_171769264_171775565_171775643_171776259
transcript_53362.known	chr2	+	4807	19	FSM	ENSMUSG00000014353.16	ENSMUST00000110325.8	4807	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	41.8620603741076	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTTTCCTGGGATTATC	NA	False	NA	9	True	AATAAA	-20	NA	128660037	128696181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_128660424_128665002_128665064_128666335_128666431_128668176_128668309_128670325_128670377_128672429_128672521_128673117_128673180_128673369_128673554_128676034_128676135_128679221_128679316_128681067_128681140_128683154_128683264_128683344_128683404_128684515_128684620_128687380_128687455_128688648_128688720_128690924_128690978_128692223_128692255_128693203
transcript_53363.known	chr2	+	2100	19	FSM	ENSMUSG00000014353.16	ENSMUST00000143398.3	2100	19	0	0	0	0	multi-exon	FALSE	canonical	1	36	junction_11	26.3253621315648	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACAACCAGAGAGAGCTACA	NA	False	NA	NA	False	NA	NA	NA	128660222	128693659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_128660424_128665002_128665064_128666335_128666431_128668176_128668309_128670325_128670377_128672429_128672521_128673117_128673180_128673369_128673554_128676034_128676135_128679221_128679316_128682651_128682724_128683154_128683264_128683344_128683404_128684515_128684620_128687380_128687455_128688648_128688720_128690924_128690978_128692223_128692255_128693203
transcript_53365.known	chr2	+	2905	8	FSM	ENSMUSG00000027386.10	ENSMUST00000028864.3	2905	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.27775312999988	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACCTTGTGTTTCTAGAT	1041	False	NA	NA	False	ATTAAA	-10	NA	128705851	128738950	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_128706068_128719279_128719440_128722175_128722347_128731620_128731747_128734362_128734504_128735686_128735825_128736685_128736825_128737136
transcript_53371.known	chr2	-	1624	9	FSM	ENSMUSG00000027387.12	ENSMUST00000028866.9	1624	9	0	0	0	0	multi-exon	FALSE	canonical	2	159	junction_3	33.6115214621415	1075	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTTTTCATACTTGATT	NA	False	NA	1	True	AATAAA	-22	NA	128785997	128768187	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_128768732_128770806_128770849_128771766_128771877_128772711_128772824_128773197_128773321_128775118_128775253_128777231_128777467_128781762_128781857_128785767
transcript_5338.nnic	chr1	+	842	7	NNC	ENSMUSG00000015314.11	novel	5729	9	NA	NA	-5209	100	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.15470053837925	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTTCTGTGATTTCTTT	2041	False	NA	NA	False	AATAAA	-15	NA	171764986	171776525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_171765196_171765568_171765683_171766018_171766049_171766962_171767037_171769191_171769264_171775565_171775643_171776259
transcript_53380.known	chr2	+	4567	7	FSM	ENSMUSG00000027394.14	ENSMUST00000035812.14	4567	7	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_4	11.1118055338555	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTTTGGTCCTCTTAC	NA	False	NA	29	True	ATTAAA	-23	NA	128907861	128938203	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_128908224_128910774_128910854_128917775_128918009_128923129_128923266_128923893_128924164_128930913_128931058_128934860
transcript_53385.known	chr2	+	1053	2	FSM	ENSMUSG00000027394.14	ENSMUST00000144730.2	1053	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTTTTATTTCTAATCAT	NA	False	NA	NA	False	AATAAA	-16	NA	128907904	128910025	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_128908224_128909291
transcript_53387.known	chr2	+	3998	15	FSM	ENSMUSG00000027395.16	ENSMUST00000103205.11	3998	15	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_10	36.5564282853179	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTGTGATTTTTATTTT	NA	False	NA	15	True	AATAAA	-16	NA	128942914	128968514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_128943184_128944882_128945051_128945497_128945645_128947168_128947302_128949906_128950044_128951150_128951375_128951959_128952132_128954561_128954734_128955420_128955703_128957558_128957693_128959847_128960019_128960959_128961117_128964989_128965187_128965630_128965885_128967133
transcript_53389.nnic	chr2	+	1371	8	NNC	ENSMUSG00000027395.16	novel	2769	13	NA	NA	-16	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	107.755960107901	52	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGATTTTTATTTTT	NA	False	NA	16	True	AATAAA	-17	NA	128942898	128968515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_128943184_128944882_128945051_128945497_128945645_128947168_128947302_128949906_128950044_128951150_128951375_128951959_128952009_128968287
transcript_53392.known	chr2	+	793	2	FSM	ENSMUSG00000037938.5	ENSMUST00000149118.2	793	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGTCAAGGTCGTCCTT	3929	False	NA	-76	True	NA	NA	NA	128971723	128975933	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_128971778_128975194
transcript_53394.known	chr2	+	1325	4	FSM	ENSMUSG00000037938.5	ENSMUST00000035481.5	1325	4	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_1	75.455652906562	2384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTCTAGGTTTGTGTGTT	3825	False	NA	45	True	NA	NA	NA	128971619	128976054	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_128971778_128972097_128972239_128972320_128972487_128975194
transcript_53395.known	chr2	+	923	2	FSM	ENSMUSG00000037938.5	ENSMUST00000137881.2	923	2	0	0	0	0	multi-exon	FALSE	canonical	3	731	junction_1	0	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGGAGAAGAGCGATGAGA	3975	False	NA	40	True	AATAAA	-44	NA	128971769	128975400	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_128972487_128975194
transcript_53398.nnic	chr2	+	3387	12	NNC	ENSMUSG00000027397.15	novel	3316	11	NA	NA	-12	0	intron_retention	FALSE	canonical	2	9	junction_6	191.197833591932	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTTGTGCTTTTTGTTT	NA	False	NA	22	True	AATAAA	-24	NA	129040671	129053536	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_129040913_129041368_129041985_129042102_129042244_129042419_129042506_129045978_129046076_129046165_129046225_129048286_129048407_129049529_129049797_129049900_129050460_129050960_129051144_129051791_129051877_129052603
transcript_53401.known	chr2	+	3316	11	FSM	ENSMUSG00000027397.15	ENSMUST00000028880.10	3316	11	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_5	146.125973050652	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTTGTGCTTTTTGTTT	NA	False	NA	22	True	AATAAA	-24	NA	129040683	129053536	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_129040913_129041368_129041985_129042102_129042244_129042419_129042506_129045978_129046076_129048286_129048407_129049529_129049797_129049900_129050460_129050960_129051144_129051791_129051877_129052603
transcript_53404.known	chr2	+	1628	4	FSM	ENSMUSG00000027397.15	ENSMUST00000140907.8	1628	4	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	11.8977121983832	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGTCGACA	NA	False	NA	NA	False	NA	NA	NA	129040720	129043098	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_129040913_129041368_129041985_129042102_129042244_129042419
transcript_53408.nnic	chr2	+	858	3	NNC	ENSMUSG00000056738.12	novel	3431	5	NA	NA	-3620	-5935	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	2	18	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGGGCATAAGTCCTGG	312	False	NA	NA	False	TATAAA	-29	NA	129066321	129067956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_129066675_129067327_129067517_129067640
transcript_53412.known	chr2	-	1943	1	FSM	ENSMUSG00000103009.2	ENSMUST00000192413.2	1943	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTATTTGTGAGGAAATTG	NA	False	NA	NA	False	ATTAAA	-15	NA	129041114	129039171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_129039200_129041100
transcript_53413.known	chr2	+	1918	2	FSM	ENSMUSG00000027397.15	ENSMUST00000144744.8	1918	2	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAAAAAAAAAAAGTCGA	NA	False	NA	NA	False	NA	NA	NA	129040722	129043096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_129040913_129041368
transcript_53414.known	chr2	-	3137	9	FSM	ENSMUSG00000048327.7	ENSMUST00000052708.7	3137	9	0	0	0	0	multi-exon	TRUE	canonical	3	256	junction_2	30.0416377715996	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGCCTGTTGTTCTCTT	NA	False	NA	0	True	AATAAA	-20	NA	129139132	129110129	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_129111184_129112494_129112682_129114416_129114478_129117409_129117566_129123811_129124020_129126776_129128021_129132877_129132930_129138233_129138301_129139024
transcript_53416.nic	chr2	-	1583	5	ISM	ENSMUSG00000048327.7	ENSMUST00000052708.7	3137	9	-33	13811	-33	-13811	5prime_fragment	FALSE	canonical	3	281	junction_1	16.9263108798108	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCATAGAGGAAATGAACAC	NA	False	NA	NA	False	TATAAA	-34	NA	129139165	129123940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_129124020_129126776_129128021_129132877_129132930_129138233_129138301_129139024
transcript_53417.nic	chr2	-	1707	4	ISM	ENSMUSG00000048327.7	ENSMUST00000052708.7	3137	9	-33	16444	-33	-16444	5prime_fragment	FALSE	canonical	3	312	junction_1	5.79271573232759	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGATGAGTGCTCCGTC	NA	False	NA	NA	False	AAGAAA	-28	NA	129139165	129126573	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_129128021_129132877_129132930_129138233_129138301_129139024
transcript_53421.known	chr2	-	682	2	FSM	ENSMUSG00000081888.2	ENSMUST00000122326.2	682	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	849	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATTCTAAAAGCTCTCCT	NA	False	NA	NA	False	AATAAA	-5	NA	129221316	129220190	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_129220605_129221048
transcript_53422.known	chr2	+	3644	8	FSM	ENSMUSG00000037902.19	ENSMUST00000049262.14	3644	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_7	35.4193536395697	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTGGGGGTGTTCCATT	NA	False	NA	NA	False	AATAAA	-20	NA	129435474	129474148	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_129435615_129450823_129451181_129457366_129457685_129458142_129458479_129460376_129460491_129463122_129463148_129469865_129469918_129471846
transcript_53423.known	chr2	+	876	6	FSM	ENSMUSG00000037902.19	ENSMUST00000160276.2	876	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	39.9729908813439	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGGCTGTGGTCTGTACT	NA	False	NA	NA	False	NA	NA	NA	129435532	129472104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_129435615_129450823_129451181_129460376_129460491_129463122_129463148_129469865_129469906_129471846
transcript_53424.known	chr2	+	5445	3	FSM	ENSMUSG00000037885.19	ENSMUST00000166282.3	5445	3	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	55	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTTTGTGATTTTTA	6231	False	NA	34	True	AATAAA	-41	NA	129642436	129674207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_129642767_129643323_129643925_129669693
transcript_53435.known	chr2	-	1161	7	FSM	ENSMUSG00000027404.17	ENSMUST00000103199.9	1161	7	0	0	0	0	multi-exon	TRUE	canonical	3	3295	junction_4	264.518850409989	14879	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTCATTTGTCTTCTGA	NA	False	NA	-11	True	AATAAA	-28	NA	130021323	130013554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_130013864_130014522_130014649_130014955_130015095_130015526_130015680_130017249_130017362_130018934_130019087_130021153
transcript_5344.known	chr1	-	2349	9	FSM	ENSMUSG00000026556.16	ENSMUST00000111264.8	2349	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	36.4520232634623	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTCTTCCTCAGTTTTT	NA	False	NA	30	True	NA	NA	NA	171854862	171831995	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_171832430_171833656_171833889_171835477_171835614_171836073_171836211_171836365_171836486_171837007_171837616_171840394_171840516_171840649_171840913_171854564
transcript_53453.known	chr2	-	1616	12	FSM	ENSMUSG00000027406.14	ENSMUST00000028892.11	1616	12	0	0	0	0	multi-exon	FALSE	canonical	3	745	junction_6	49.1089192551946	4764	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTTTGTGTTTTTATT	NA	False	NA	NA	False	AATAAA	-19	NA	130126467	130121228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_130121647_130122182_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090_130126169_130126301
transcript_5346.known	chr1	+	4622	33	FSM	ENSMUSG00000026553.18	ENSMUST00000135192.8	4622	33	0	0	0	0	multi-exon	FALSE	canonical	1	295	junction_11	137.915678495956	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTTGCCGTTTCC	2764	False	NA	10	True	AATAAA	-15	NA	171910095	171949892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
transcript_53460.known	chr2	-	1233	12	FSM	ENSMUSG00000027406.14	ENSMUST00000239288.2	1233	12	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	222.733469301557	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATACTATCTGGTTTTGTG	NA	False	NA	NA	False	AATAAA	-11	NA	130126381	130121236	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_130121358_130122182_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090_130126169_130126301
transcript_53473.known	chr2	+	1877	12	FSM	ENSMUSG00000027405.17	ENSMUST00000103198.11	1877	12	0	0	0	0	multi-exon	FALSE	canonical	3	1876	junction_9	231.115011975273	4199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTATTTTGTTTATTG	NA	False	NA	31	True	AATAAA	-20	NA	130116349	130121233	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
transcript_53474.known	chr2	+	779	3	FSM	ENSMUSG00000027405.17	ENSMUST00000145335.3	779	3	0	0	0	0	multi-exon	FALSE	canonical	3	2327	junction_2	43.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACCCCAATAAAAACACA	NA	False	NA	-2	True	NA	NA	NA	130119630	130121200	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_130119891_130120075_130120211_130120816
transcript_53475.known	chr2	-	452	4	FSM	ENSMUSG00000027406.14	ENSMUST00000184538.2	452	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	388.906444048208	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTATCTGGTTTTGTGTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	130122471	130121232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_130121358_130121475_130121647_130122182_130122244_130122376
transcript_53476.known	chr2	+	946	5	FSM	ENSMUSG00000027405.17	ENSMUST00000028890.15	946	5	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_1	920.852152899693	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAACCCCAATAAAAACA	NA	False	NA	-4	True	NA	NA	NA	130119076	130121198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_130119235_130119395_130119545_130119768_130119891_130120075_130120211_130120816
transcript_53477.known	chr2	-	447	1	FSM	ENSMUSG00000083483.4	ENSMUST00000117531.2	447	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	197	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCACACCGGAGGTTAAT	NA	False	NA	NA	False	NA	NA	NA	130227249	130226802	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_130226800_130227200
transcript_53479.known	chr2	-	2366	14	FSM	ENSMUSG00000027408.8	ENSMUST00000028897.8	2366	14	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_8	18.681383322448	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTCTTGAGTTCCTATTC	NA	False	NA	-3	True	ATTAAA	-19	NA	130239494	130232694	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_130233063_130233157_130233261_130234990_130235131_130235303_130235602_130235685_130235866_130235951_130236149_130236229_130236354_130236656_130236746_130236841_130236993_130237555_130237644_130237748_130237889_130238027_130238138_130238250_130238413_130239278
transcript_53487.nic	chr2	-	307	2	ISM	ENSMUSG00000027408.8	ENSMUST00000028897.8	2366	14	-45	5672	-45	-5671	5prime_fragment	FALSE	canonical	3	166	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCGTTGTCAAGAAGCGAA	NA	False	NA	NA	False	AAGAAA	-6	NA	130239539	130238366	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_130238413_130239278
transcript_53488.known	chr2	+	3161	24	FSM	ENSMUSG00000027411.18	ENSMUST00000028900.11	3161	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	83.6383654878219	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTAGGTTGTGTTCAGG	NA	False	NA	NA	False	NA	NA	NA	130266284	130286189	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281446_130281539_130281635_130281760_130281838_130282150_130282283_130282371_130282500_130282626_130282663_130282819_130282929_130283084_130283220_130283314_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
transcript_53489.nic	chr2	+	2754	23	NIC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	-13	0	intron_retention	FALSE	canonical	0	0	junction_14	85.518025261509	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTGTTGTATGCTGTCTG	NA	False	NA	21	True	AATAAA	-21	NA	130266245	130285654	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281446_130281539_130281635_130281760_130281838_130282150_130282500_130282626_130282663_130282819_130282929_130283084_130283220_130283314_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
transcript_53502.known	chr2	-	1689	8	FSM	ENSMUSG00000037773.15	ENSMUST00000110277.2	1689	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	13.0868371321129	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTGTCGGGGAGCAGG	7648	False	NA	3	True	AATAAA	-23	NA	130266607	130260878	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_130261254_130261549_130261811_130263809_130264057_130264144_130264296_130264385_130264625_130264732_130264813_130265331_130265473_130266412
transcript_53504.known	chr2	-	3496	7	FSM	ENSMUSG00000037773.15	ENSMUST00000089581.11	3496	7	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_6	6.9940450861191	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAATTGAAGAGTTTAAAA	8057	False	NA	NA	False	AATAAA	-22	NA	130266198	130259602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_130261254_130261549_130261811_130263809_130264057_130264144_130264296_130264385_130264625_130264732_130264813_130265331
transcript_53511.known	chr2	-	3032	6	FSM	ENSMUSG00000037773.15	ENSMUST00000153663.8	3032	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	6.96850055607374	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAAGCTTTTTTGGTTTGT	8069	False	NA	NA	False	ATTAAA	-14	NA	130266186	130260144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_130261254_130261549_130261811_130263809_130264057_130264144_130264625_130264732_130264813_130265331
transcript_53513.nnic	chr2	-	422	3	Antisense	novelGene_ENSMUSG00000115955.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTGCCTTTGTATTCCTG	NA	False	NA	NA	False	AATGAA	-21	NA	130366412	130360824	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr2_-_130360962_130361348_130361555_130366333
transcript_53516.known	chr2	+	1057	3	FSM	ENSMUSG00000037740.9	ENSMUST00000046149.9	1057	3	0	0	0	0	multi-exon	FALSE	canonical	3	543	junction_1	21	345	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGCCCATTTACTGGCT	385	False	NA	14	True	NA	NA	NA	130405661	130407314	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_130405911_130406000_130406352_130406857
transcript_53517.known	chr2	+	537	3	FSM	ENSMUSG00000027301.8	ENSMUST00000028764.6	537	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGACTGGTGTCTAATTGT	NA	False	NA	NA	False	NA	NA	NA	130418092	130418974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_130418250_130418510_130418713_130418796
transcript_53519.nic	chr2	+	621	2	ISM	ENSMUSG00000027301.8	ENSMUST00000028764.6	537	3	177	0	177	0	3prime_fragment	FALSE	canonical	2	2	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGACTGGTGTCTAATTGT	NA	False	NA	NA	False	NA	NA	NA	130418269	130418974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_130418713_130418796
transcript_53526.nnic	chr2	-	2552	7	NNC	ENSMUSG00000027300.11	novel	3731	6	NA	NA	-2	-1328	at_least_one_novel_splicesite	FALSE	canonical	3	113	junction_5	32.7078821624934	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGATTCCTCCTAGCACA	NA	False	NA	NA	False	AATAAA	-19	NA	130471960	130433249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_130433935_130439217_130439377_130441433_130442632_130444476_130444573_130446404_130446547_130470408_130470556_130471835
transcript_53529.known	chr2	-	3731	6	FSM	ENSMUSG00000027300.11	ENSMUST00000028761.5	3731	6	0	0	0	0	multi-exon	TRUE	canonical	3	59	junction_5	36.0477461153953	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGACATTTATTTCTCAT	NA	False	NA	NA	False	AATAAA	-15	NA	130471958	130431921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_130433935_130439217_130439377_130441433_130442632_130444476_130444573_130446404_130446547_130471835
transcript_53535.nnic	chr2	-	3169	3	NNC	ENSMUSG00000079043.4	novel	3015	2	NA	NA	-13	-6	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_1	74	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTGATCCACAAAGTCTTA	NA	False	NA	-11	True	AATAAA	-19	NA	130471960	130455765	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_130458663_130470408_130470556_130471835
transcript_53536.known	chr2	-	3015	2	FSM	ENSMUSG00000079043.4	ENSMUST00000110262.3	3015	2	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCACAAAGTCTTACTGCAT	NA	False	NA	-5	True	AATAAA	-25	NA	130471947	130455759	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_130458663_130471835
transcript_53542.known	chr2	-	1238	9	FSM	ENSMUSG00000068290.12	ENSMUST00000089559.11	1238	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	130.411607995608	1498	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTGCCAGAAGTCCCACT	NA	False	NA	71	True	AATAAA	-18	NA	130506579	130495879	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_130496243_130496581_130496631_130497105_130497163_130500219_130500259_130500508_130500632_130503656_130503759_130503996_130504110_130505267_130505475_130506394
transcript_53545.known	chr2	+	1390	8	FSM	ENSMUSG00000074797.12	ENSMUST00000103193.5	1390	8	0	0	0	0	multi-exon	TRUE	canonical	3	338	junction_5	87.1842992792643	3891	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTGTCTGTCTTGAGTTT	5235	False	NA	18	True	AATAAA	-18	NA	130509529	130523534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_130509856_130513320_130513379_130513475_130513541_130513979_130514054_130516158_130516191_130517548_130517665_130521254_130521332_130522892
transcript_53546.nic	chr2	-	1156	5	ISM	ENSMUSG00000074796.11	ENSMUST00000099362.11	3196	21	11800	0	2846	0	3prime_fragment	FALSE	canonical	3	116	junction_4	16.4544826719043	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCAGTCGCCCTCCCTGG	NA	False	NA	-1	True	AATAAA	-22	NA	130527639	130526032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_130526424_130526531_130526702_130526777_130526974_130527150_130527325_130527414
transcript_53551.known	chr2	-	6628	37	FSM	ENSMUSG00000027309.19	ENSMUST00000044766.15	6628	37	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	14.9720933822533	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGTCTCTGCCTGTCTC	NA	False	NA	NA	False	AATAAA	-18	NA	130682054	130548119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_130551239_130551857_130551952_130552731_130552798_130554179_130554383_130554871_130554947_130555316_130555424_130559180_130559268_130561759_130561896_130569067_130569106_130572708_130572835_130578386_130578546_130579298_130579388_130580900_130581019_130581290_130581390_130582320_130582410_130583736_130583884_130590604_130590709_130606372_130606461_130607607_130607659_130609529_130609601_130612591_130612710_130616978_130617025_130617646_130617692_130619124_130619202_130620336_130620425_130626343_130626381_130627378_130627461_130633771_130633908_130635908_130635965_130640086_130640186_130648790_130648869_130652741_130652849_130654764_130654862_130656098_130656224_130662388_130662509_130664340_130664421_130681883
transcript_53552.nic	chr2	-	1313	8	Fusion	ENSMUSG00000089662.2_ENSMUSG00000027309.19	novel	1984	7	NA	NA	0	115	multi-exon	TRUE	canonical	3	31	junction_1	16.7063473211928	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTGGTGTGTATGTGT	NA	False	NA	1	True	AATAAA	-32	NA	130682052	130645305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_-_130645843_130648790_130648869_130652741_130652849_130654764_130654862_130656098_130656224_130662388_130662509_130664340_130664421_130681883
transcript_53554.known	chr2	-	1984	7	FSM	ENSMUSG00000027309.19	ENSMUST00000110243.8	1984	7	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_6	9.03081145609604	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAATAGATATTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	130682065	130647595	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_130648869_130652741_130652849_130654764_130654862_130656098_130656224_130662388_130662509_130664340_130664421_130681883
transcript_53556.known	chr2	-	2156	12	FSM	ENSMUSG00000027309.19	ENSMUST00000144014.8	2156	12	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	19.7408834487933	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAATTACA	NA	False	NA	NA	False	ACTAAA	-6	NA	130682031	130625352	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_130626381_130627378_130627461_130633771_130633908_130635908_130635965_130640086_130640186_130648790_130648869_130652741_130652849_130654764_130654862_130656098_130656224_130662388_130662509_130664340_130664421_130681883
transcript_53557.known	chr2	+	3089	16	FSM	ENSMUSG00000027330.17	ENSMUST00000028804.15	3089	16	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_7	16.6951756171922	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAATCTGTTTGTTATGCA	NA	False	NA	NA	False	AATAAA	-16	NA	131028868	131040415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_131029301_131030025_131030148_131030998_131031051_131033064_131033107_131033269_131033307_131033515_131033642_131033732_131033856_131034476_131034609_131034987_131035069_131035158_131035333_131035514_131035608_131036034_131036098_131036258_131036358_131036545_131036680_131038896_131039009_131039148
transcript_53558.known	chr2	+	3004	15	FSM	ENSMUSG00000027330.17	ENSMUST00000079857.9	3004	15	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_6	17.0899481137484	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCTGTTTGTTATGCAGA	NA	False	NA	NA	False	AATAAA	-18	NA	131028877	131040417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_131029301_131030025_131030148_131030998_131031051_131033064_131033107_131033269_131033307_131033515_131033687_131034476_131034609_131034987_131035069_131035158_131035333_131035514_131035608_131036034_131036098_131036258_131036358_131036545_131036680_131038896_131039009_131039148
transcript_53562.known	chr2	-	874	7	FSM	ENSMUSG00000027327.17	ENSMUST00000184121.8	874	7	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	340.164380198097	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACGGTGTGGCTTCCTCAC	NA	False	NA	NA	False	NA	NA	NA	131001944	130988713	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_130988896_130989080_130989204_130990075_130990215_130991360_130991463_130993537_130993677_130995513_130995631_131001872
transcript_53565.known	chr2	-	2600	7	FSM	ENSMUSG00000027329.10	ENSMUST00000110218.9	2600	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_5	1.24721912892465	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATCTATTACTGTGTACAA	8032	False	NA	NA	False	NA	NA	NA	131017121	131012235	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_131013711_131013821_131013946_131014123_131014179_131014289_131014330_131014542_131014700_131015115_131015228_131016484
transcript_5357.known	chr1	-	3016	18	FSM	ENSMUSG00000003458.13	ENSMUST00000140643.8	3016	18	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_16	166.01196438311	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTGTTTGGTATTCTTC	8996	False	NA	50	True	ATTAAA	-21	NA	171910362	171893579	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_171894364_171894897_171895111_171895355_171895511_171895752_171895841_171896128_171896225_171896328_171896432_171897542_171897716_171898817_171898896_171899031_171899137_171899687_171899841_171900032_171900143_171900343_171900495_171901839_171901986_171902481_171902604_171902971_171903096_171903192_171903308_171908778_171908884_171910167
transcript_53570.known	chr2	-	832	6	FSM	ENSMUSG00000027327.17	ENSMUST00000028800.12	832	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	282.042124513343	1263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGCTGTGTGACGGTGTG	NA	False	NA	NA	False	NA	NA	NA	131002001	130988723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_130988896_130989080_130989204_130990075_130990215_130993537_130993681_130995504_130995631_131001872
transcript_53576.known	chr2	+	1101	4	FSM	ENSMUSG00000068264.12	ENSMUST00000110210.8	1101	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	23.6126143312331	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATCTTGTCCTCTTTTTGT	NA	False	NA	8	True	ATTAAA	-14	NA	131052343	131055431	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_131052602_131053182_131053394_131054366_131054657_131055089
transcript_53577.known	chr2	+	703	3	FSM	ENSMUSG00000068264.12	ENSMUST00000110206.2	703	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	29.5	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCGCTGACCCCTCACCAG	NA	False	NA	NA	False	NA	NA	NA	131052523	131054784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_131052602_131053182_131053394_131054370
transcript_53579.known	chr2	+	868	2	FSM	ENSMUSG00000068264.12	ENSMUST00000134086.2	868	2	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	0	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAAGGAAGGGACCTGGGTA	NA	False	NA	NA	False	NA	NA	NA	131052289	131054922	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_131052602_131054366
transcript_53580.known	chr2	+	429	2	FSM	ENSMUSG00000068264.12	ENSMUST00000153901.2	429	2	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGGACAGTGCTATGGCT	NA	False	NA	NA	False	NA	NA	NA	131052316	131054514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_131052602_131054370
transcript_53581.known	chr2	+	2867	7	FSM	ENSMUSG00000037523.14	ENSMUST00000041362.12	2867	7	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_4	7.24377127070024	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTGAGTTCCAAATTTC	7264	False	NA	14	True	ATTAAA	-19	NA	131075986	131089945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_131076048_131080655_131080831_131082234_131082413_131083799_131083970_131085038_131085193_131087122_131087590_131088283
transcript_53582.known	chr2	+	3057	7	FSM	ENSMUSG00000037523.14	ENSMUST00000110199.3	3057	7	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	57.107111835762	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTGAGTTCCAAATTTC	7302	False	NA	14	True	ATTAAA	-19	NA	131076024	131089945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_131076276_131080655_131080831_131082234_131082413_131083799_131083970_131085038_131085193_131087122_131087590_131088283
transcript_53585.known	chr2	+	4266	7	FSM	ENSMUSG00000037514.19	ENSMUST00000150843.9	4266	7	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_2	97.0093065409477	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTTGCTTGCATGTA	869	False	NA	5	True	AATAAA	-19	NA	131104419	131141108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_131104736_131115830_131116184_131122076_131122331_131124511_131124689_131129393_131129518_131135318_131135445_131138192
transcript_5359.known	chr1	-	2901	17	FSM	ENSMUSG00000003458.13	ENSMUST00000003550.11	2901	17	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_8	31.8580224394108	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTGTTTGGTATTCTTC	8996	False	NA	50	True	ATTAAA	-21	NA	171910362	171893579	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_171894364_171894897_171895111_171895355_171895511_171895752_171895841_171896128_171896225_171896328_171896432_171897542_171897716_171898817_171898896_171899031_171899137_171899687_171899841_171900032_171900143_171900343_171900495_171901839_171901986_171902481_171902604_171902971_171903096_171908778_171908884_171910167
transcript_53593.known	chr2	+	1617	8	FSM	ENSMUSG00000027333.19	ENSMUST00000110180.2	1617	8	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	45.6709616134134	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACGCTCCTTTGCTTCTCTC	NA	False	NA	15	True	AATAAA	-16	NA	131333912	131367087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131362331_131362567_131362974_131363092_131363978_131364140_131366662
transcript_53595.known	chr2	+	2170	8	FSM	ENSMUSG00000027333.19	ENSMUST00000110186.9	2170	8	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_6	48.183746942177	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGCTTCTCTCCTCAG	NA	False	NA	20	True	AATAAA	-21	NA	131333862	131367092	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131362331_131363092_131363978_131364140_131366163_131366254_131366662
transcript_53598.known	chr2	+	2270	7	FSM	ENSMUSG00000027333.19	ENSMUST00000028806.12	2270	7	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_6	10.8269211792745	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCTCAGTTCAAAGGCTC	NA	False	NA	31	True	AATAAA	-32	NA	131333683	131367103	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131362331_131363092_131363978_131364140_131366662
transcript_53600.known	chr2	+	1320	6	FSM	ENSMUSG00000027333.19	ENSMUST00000110179.9	1320	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	49.3128786423993	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGCTTCTCTCCTCAG	NA	False	NA	20	True	AATAAA	-21	NA	131333862	131367092	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131363978_131364140_131366662
transcript_53603.known	chr2	+	985	4	FSM	ENSMUSG00000027333.19	ENSMUST00000110182.9	985	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	65.5303152916436	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGCTTCTCTCCTCAG	NA	False	NA	20	True	AATAAA	-21	NA	131333862	131367092	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131366662
transcript_53607.known	chr2	+	2184	3	FSM	ENSMUSG00000079037.10	ENSMUST00000091288.13	2184	3	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	0.5	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGGCGGGGTTTGTTCT	NA	False	NA	7	True	ATTAAA	-17	NA	131751847	131780349	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_131751924_131754114_131754213_131778339
transcript_53608.known	chr2	+	1938	3	FSM	ENSMUSG00000027338.17	ENSMUST00000110171.9	1938	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	6	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACGGTGTCTGGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	131792781	131798050	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_131792836_131794928_131795503_131796740
transcript_53609.nnic	chr2	-	524	3	Antisense	novelGene_ENSMUSG00000027338.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	3	junction_1	0.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTTGTGGTATGACCTA	NA	False	NA	NA	False	ATTAAA	-25	NA	131796919	131794347	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr2_-_131794593_131796102_131796196_131796733
transcript_53612.known	chr2	+	1969	3	FSM	ENSMUSG00000027338.17	ENSMUST00000110170.8	1969	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	7	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACGGTGTCTGGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	131792780	131798050	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_131792836_131794928_131795503_131796710
transcript_53613.known	chr2	-	8233	11	FSM	ENSMUSG00000027339.16	ENSMUST00000028814.15	8233	11	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_10	8.85494212290515	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTTTTCACTTGGGTCTC	NA	False	NA	NA	False	AATAAA	-17	NA	131871921	131831334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_131838374_131840164_131840263_131842352_131842475_131843605_131843658_131844801_131844904_131846218_131846380_131847227_131847317_131849285_131849438_131851605_131851682_131854481_131854573_131871670
transcript_53616.known	chr2	-	6364	16	FSM	ENSMUSG00000027340.16	ENSMUST00000028815.15	6364	16	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_8	16.3644601363918	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGTTGTCATTTGCCTC	7599	False	NA	-1	True	AATAAA	-17	NA	131987028	131894415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_131898822_131900119_131900216_131902582_131902721_131903978_131904109_131907283_131907390_131908637_131908786_131913230_131913388_131913836_131913958_131917418_131917601_131919348_131919414_131920332_131920422_131931015_131931174_131933132_131933250_131936061_131936161_131943391_131943647_131986931
transcript_53625.known	chr2	-	1612	4	FSM	ENSMUSG00000027341.11	ENSMUST00000028816.9	1612	4	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_2	26.7332502076846	2052	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGTTGTTATTGAT	4870	False	NA	-2	True	TATAAA	-20	NA	132089727	132081411	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_132082547_132085938_132086062_132087875_132087995_132089492
transcript_53626.known	chr2	-	1551	4	FSM	ENSMUSG00000027341.11	ENSMUST00000110163.8	1551	4	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_3	223.123782287371	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGTTGTTATTGAT	4908	False	NA	-2	True	TATAAA	-20	NA	132089689	132081411	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_132082547_132085938_132086062_132087875_132087995_132089515
transcript_53627.known	chr2	-	1531	4	FSM	ENSMUSG00000027341.11	ENSMUST00000180286.2	1531	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	263.641591728029	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGTGTGTTGTTATTG	4889	False	NA	-4	True	TATAAA	-18	NA	132089708	132081413	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_132082547_132085938_132086062_132087875_132087995_132089552
transcript_53638.known	chr2	-	359	3	FSM	ENSMUSG00000027341.11	ENSMUST00000143782.2	359	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	297	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTGGGAAAGCTGAAGTG	4918	False	NA	NA	False	NA	NA	NA	132089679	132087239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_132087293_132087875_132087995_132089492
transcript_5364.nic	chr1	+	943	6	ISM	ENSMUSG00000026553.18	ENSMUST00000027833.12	4351	33	-29	29636	-2	-866	5prime_fragment	FALSE	canonical	3	862	junction_4	74.9415772452115	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATTGAGACTTTGCAG	3038	False	NA	NA	False	AATAAA	-4	NA	171910369	171920261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811
transcript_53640.known	chr2	-	2957	3	FSM	ENSMUSG00000027341.11	ENSMUST00000110164.8	2957	3	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_2	10	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGTTGTTATTGAT	5023	False	NA	-2	True	TATAAA	-20	NA	132089574	132081411	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_132082547_132085938_132086062_132087875
transcript_53655.known	chr2	-	1518	6	FSM	ENSMUSG00000027342.15	ENSMUST00000028817.7	1518	6	0	0	0	0	multi-exon	FALSE	canonical	3	1968	junction_1	234.222629137323	7018	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACGTTGTGCAAAGTTTTC	8225	False	NA	-10	True	AATAAA	-27	NA	132095234	132091081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_132091616_132091693_132091818_132093163_132093359_132093610_132093679_132093822_132093921_132094735
transcript_53656.known	chr2	+	921	2	FSM	ENSMUSG00000087377.2	ENSMUST00000124336.2	921	2	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	0	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATTATTTTTAAAGATAAT	545	False	NA	NA	False	NA	NA	NA	132095276	132103253	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_132095450_132102505
transcript_53658.known	chr2	+	8396	13	FSM	ENSMUSG00000058793.15	ENSMUST00000103181.11	8396	13	0	0	0	0	multi-exon	FALSE	canonical	2	258	junction_5	60.9331942923286	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTGCGTGTTTTTTGAT	5244	False	NA	NA	False	AATAAA	-17	NA	132105067	132153970	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_132105418_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072
transcript_53660.known	chr2	+	8073	13	FSM	ENSMUSG00000058793.15	ENSMUST00000089461.11	8073	13	0	0	0	0	multi-exon	FALSE	canonical	2	123	junction_1	89.520132744912	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTGCGTGTTTTTTGAT	NA	False	NA	NA	False	AATAAA	-17	NA	132127858	132153970	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_132127886_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072
transcript_53667.known	chr2	+	1247	4	FSM	ENSMUSG00000058793.15	ENSMUST00000110158.8	1247	4	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_1	90.9322091817122	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTCTGAGCCCTTTCTT	5244	False	NA	NA	False	AATAAA	-16	NA	132105067	132138113	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_132105418_132135164_132135302_132136303_132136401_132137450
transcript_53669.nnic	chr2	+	936	5	NNC	ENSMUSG00000058793.15	novel	8073	13	NA	NA	-58	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	200.173050134128	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTCTGAGCCCTTTCTT	NA	False	NA	NA	False	AATAAA	-16	NA	132127800	132138113	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_132127886_132135164_132135302_132136303_132136401_132137450_132137732_132137777
transcript_5367.known	chr1	+	1917	8	FSM	ENSMUSG00000003464.14	ENSMUST00000075895.9	1917	8	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_6	20.1666526114529	559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGTTATTTTTCATC	NA	False	NA	24	True	AATAAA	-14	NA	171954321	171962850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_171954416_171956197_171956308_171956721_171956888_171957468_171957555_171958178_171958341_171960696_171960874_171961566_171961612_171961773
transcript_53675.known	chr2	-	3703	20	FSM	ENSMUSG00000027346.16	ENSMUST00000110142.8	3703	20	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_19	19.1733598654971	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGGCTTCCTGATTTGT	NA	False	NA	-1	True	NA	NA	NA	132420168	132371002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_132372663_132375993_132376155_132376617_132376754_132377281_132377419_132378604_132378671_132380001_132380064_132381818_132381859_132382204_132382283_132384162_132384256_132386311_132386367_132388760_132388894_132389476_132389640_132392233_132392475_132395876_132396001_132398854_132398897_132400526_132400603_132406546_132406632_132410539_132410637_132414104_132414178_132419987
transcript_53676.known	chr2	-	3612	19	FSM	ENSMUSG00000027346.16	ENSMUST00000149854.8	3612	19	0	0	0	0	multi-exon	TRUE	canonical	3	23	junction_15	20.2402239776804	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGCTTCCTGATTTGTT	NA	False	NA	0	True	NA	NA	NA	132420155	132371001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_132372663_132375993_132376155_132376617_132376754_132377281_132377419_132378604_132378671_132380001_132380064_132381818_132381859_132382204_132382283_132384162_132384256_132386311_132386367_132388760_132388894_132389476_132389640_132392233_132392475_132395876_132396001_132398854_132398897_132406546_132406632_132410539_132410637_132414104_132414175_132419987
transcript_53680.nic	chr2	-	577	4	ISM	ENSMUSG00000027346.16	ENSMUST00000145694.8	3577	19	0	35401	0	144	5prime_fragment	FALSE	canonical	3	81	junction_3	12.8322510366134	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGGAAGGAAGAAAGAG	NA	False	NA	NA	False	AATAGA	-33	NA	132420168	132406402	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_132406632_132410539_132410637_132414104_132414175_132419987
transcript_53681.known	chr2	-	334	3	FSM	ENSMUSG00000027346.16	ENSMUST00000131617.2	334	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	40	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGTTTTCTTTATATATT	NA	False	NA	NA	False	NA	NA	NA	132420166	132406546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_132406632_132414104_132414175_132419987
transcript_53686.known	chr2	+	1076	3	FSM	ENSMUSG00000044991.11	ENSMUST00000061891.11	1076	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	20.5	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGACTCAGTCTATTTC	NA	False	NA	27	True	NA	NA	NA	132528850	132592975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_132528902_132533869_132534052_132592132
transcript_53687.known	chr2	+	545	3	FSM	ENSMUSG00000044991.11	ENSMUST00000148271.8	545	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	39	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCTCTATCTTACAGCGA	NA	False	NA	NA	False	NA	NA	NA	132532076	132592423	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_132532149_132533869_132534052_132592132
transcript_53690.known	chr2	-	2948	11	FSM	ENSMUSG00000037376.15	ENSMUST00000147336.8	2948	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_6	111.30929880293	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCATTAATGATACAATGCT	NA	False	NA	-12	True	AATAAA	-23	NA	132657975	132646126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_132647533_132648630_132648718_132648816_132648920_132650123_132650210_132650580_132650937_132651748_132651874_132652006_132652210_132652336_132652429_132652908_132653019_132653967_132654096_132657723
transcript_53691.known	chr2	-	2828	11	FSM	ENSMUSG00000037376.15	ENSMUST00000039554.7	2828	11	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_5	30.9683709613535	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCATTAATGATACAATGCT	NA	False	NA	-12	True	AATAAA	-23	NA	132657974	132646126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_132647533_132648630_132648718_132648816_132648920_132650123_132650210_132650580_132650937_132651748_132651874_132652125_132652210_132652336_132652429_132652908_132653019_132653967_132654096_132657723
transcript_53697.known	chr2	-	458	4	FSM	ENSMUSG00000037376.15	ENSMUST00000145117.8	458	4	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	171.593188157987	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTCACATTACTTGAAA	NA	False	NA	NA	False	ATTAAA	-15	NA	132657678	132652336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_132652429_132652908_132653019_132653967_132654096_132657550
transcript_53698.nic	chr2	-	639	4	ISM	ENSMUSG00000037376.15	ENSMUST00000147336.8	2948	11	-57	6210	-57	0	5prime_fragment	FALSE	canonical	3	367	junction_2	42.9055810925442	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTCACATTACTTGAAA	NA	False	NA	NA	False	ATTAAA	-15	NA	132658032	132652336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_132652429_132652908_132653019_132653967_132654096_132657723
transcript_53699.known	chr2	+	3179	19	FSM	ENSMUSG00000027353.15	ENSMUST00000028831.15	3179	19	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_1	21.8867032185704	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTGTTCAGGTCACAAAA	NA	False	NA	2	True	ATTAAA	-14	NA	132658060	132685815	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_132658386_132658993_132659166_132659624_132659709_132661522_132661606_132661898_132662049_132663264_132663369_132665094_132665294_132666644_132666731_132669386_132669539_132669849_132670046_132673567_132673599_132674682_132674824_132676657_132676800_132680006_132680203_132680625_132680846_132681373_132681584_132682663_132682741_132684522_132684713_132685394
transcript_53701.known	chr2	+	3397	18	FSM	ENSMUSG00000027353.15	ENSMUST00000066559.6	3397	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	44.3952832682774	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAAGAAGAAGTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	132658060	132686117	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_132658386_132658993_132659166_132661522_132661606_132661898_132662049_132663264_132663369_132665094_132665294_132666644_132666731_132669386_132669539_132669849_132670046_132673567_132673599_132674682_132674824_132676657_132676800_132680006_132680203_132680625_132680846_132681373_132681584_132682663_132682741_132684522_132684713_132685394
transcript_53703.known	chr2	+	735	3	FSM	ENSMUSG00000027353.15	ENSMUST00000135685.2	735	3	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_1	25.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGGAGAACCAACCAAGAAA	NA	False	NA	NA	False	NA	NA	NA	132658143	132659945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_132658386_132658993_132659166_132659624
transcript_53708.known	chr2	-	3715	5	FSM	ENSMUSG00000043110.3	ENSMUST00000049787.3	3715	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	2.48746859276655	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGATGTATTTTGTAACAA	NA	False	NA	NA	False	AATAAA	-21	NA	132722811	132710224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_132712824_132713946_132714079_132719932_132720138_132721154_132721836_132722713
transcript_53715.known	chr2	-	5488	8	FSM	ENSMUSG00000034723.12	ENSMUST00000038228.11	5488	8	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_5	5.36808406515884	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTGATGTAATGGAGATTT	2692	False	NA	NA	False	AATAAA	-41	NA	134486065	134436104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_134440786_134441929_134441994_134442807_134442910_134451450_134451497_134462474_134462604_134463307_134463354_134481641_134481758_134485761
transcript_53716.known	chr2	-	807	1	FSM	ENSMUSG00000083879.5	ENSMUST00000121500.2	807	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTCAAGGATTCAAGCCA	NA	False	NA	NA	False	TTTAAA	-26	NA	134605550	134604743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_134604700_134605600
transcript_53717.known	chr2	+	480	1	FSM	ENSMUSG00000082399.2	ENSMUST00000118248.2	480	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGACTCCTGCCAGTGTG	NA	False	NA	NA	False	NA	NA	NA	134645868	134646348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_134645900_134646300
transcript_5372.nnic	chr1	+	1887	8	NNC	ENSMUSG00000003464.14	novel	1917	8	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	3	80	junction_2	126.880950146994	190	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGTTATTTTTCATC	NA	False	NA	24	True	AATAAA	-14	NA	171954301	171962850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_171954416_171956197_171956308_171956771_171956888_171957468_171957555_171958178_171958341_171960696_171960874_171961566_171961612_171961773
transcript_53778.known	chr2	+	412	4	FSM	ENSMUSG00000084762.2	ENSMUST00000146980.2	412	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	289.483831826389	4249	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACTCTGAGCCCAAAATC	NA	False	NA	25	True	AATAAA	-35	NA	135490826	135493983	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_135490892_135491052_135491123_135493417_135493478_135493766
transcript_53782.known	chr2	-	503	2	FSM	ENSMUSG00000086928.2	ENSMUST00000140949.2	503	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTCATACATTCTTACAG	NA	False	NA	NA	False	AATAAA	-19	NA	135654847	135653864	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_135654220_135654699
transcript_53784.known	chr2	+	5089	8	FSM	ENSMUSG00000027281.17	ENSMUST00000099311.9	5089	8	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	4.68170560233541	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTTTGTTGTGCAATTT	NA	False	NA	15	True	AATAAA	-23	NA	136734087	136913870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_136734282_136747462_136747521_136842103_136842194_136846853_136846975_136885919_136885998_136888636_136888726_136908049_136908151_136909512
transcript_53789.known	chr2	+	2723	7	FSM	ENSMUSG00000027281.17	ENSMUST00000180277.3	2723	7	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	4.60977222864644	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGTATGTTA	NA	False	NA	NA	False	NA	NA	NA	136747462	136911698	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_136747521_136842103_136842194_136846853_136846975_136885919_136885998_136888636_136888726_136908049_136908151_136909512
transcript_53791.known	chr2	-	3178	6	FSM	ENSMUSG00000027274.17	ENSMUST00000110089.9	3178	6	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_3	119.159389055164	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTATACAATCCTTACTA	NA	False	NA	0	True	AATAAA	-20	NA	136733309	136715699	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_136716627_136718008_136718120_136719534_136719711_136722170_136723560_136727392_136727621_136732962
transcript_53792.known	chr2	-	2935	6	FSM	ENSMUSG00000027274.17	ENSMUST00000028730.13	2935	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	104.732802884292	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTATACAATCCTTACTA	NA	False	NA	0	True	AATAAA	-20	NA	136733302	136715699	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_136716627_136718008_136718120_136719534_136719711_136722170_136723560_136727392_136727621_136733198
transcript_53799.known	chr2	-	944	3	FSM	ENSMUSG00000115423.3	ENSMUST00000227806.2	944	3	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_1	8.5	1157	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAGCTGCCTTCACAAGT	NA	False	NA	NA	False	AATAAA	-21	NA	136733309	136723190	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_136723560_136727392_136727621_136732962
transcript_53806.known	chr2	+	4657	5	FSM	ENSMUSG00000062098.12	ENSMUST00000091556.12	4657	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	2.87228132326901	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTGCTTTTTTAGTATTT	NA	False	NA	16	True	AATAAA	-17	NA	138098484	138129342	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_138098675_138120885_138121178_138121668_138121760_138122292_138122412_138125377
transcript_53809.known	chr2	-	2480	14	FSM	ENSMUSG00000039033.12	ENSMUST00000046656.9	2480	14	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_13	23.0823070642491	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTGTGTGACTGCTTGT	NA	False	NA	NA	False	AATAAA	-18	NA	139908680	139675399	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_139676368_139699621_139699696_139725691_139725803_139752452_139752564_139789076_139789156_139793379_139793500_139819526_139819634_139827048_139827129_139837992_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908406
transcript_53810.known	chr2	-	2258	14	FSM	ENSMUSG00000039033.12	ENSMUST00000110079.9	2258	14	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	20.460092487948	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTGTGTGACTGCTTGT	NA	False	NA	NA	False	AATAAA	-18	NA	139908725	139675399	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_139676368_139699621_139699696_139725691_139725803_139752452_139752564_139789076_139789156_139793379_139793500_139819526_139819634_139827048_139827129_139837992_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908673
transcript_53816.known	chr2	-	2127	13	FSM	ENSMUSG00000039033.12	ENSMUST00000099304.4	2127	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	26.3739138796905	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTGTGTGACTGCTTGT	NA	False	NA	NA	False	AATAAA	-18	NA	139908705	139675399	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_139676368_139699621_139699696_139725691_139725803_139789076_139789156_139793379_139793500_139819526_139819634_139827048_139827129_139837992_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908673
transcript_53821.nic	chr2	-	2207	8	ISM	ENSMUSG00000039033.12	ENSMUST00000110079.9	2258	14	-22	142737	-22	315	5prime_fragment	FALSE	canonical	3	57	junction_2	18.1186565254081	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGTATTTTCTCAGTATGT	NA	False	NA	NA	False	AATAAA	-17	NA	139908747	139818136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_139819634_139827048_139827129_139837992_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908673
transcript_53823.nic	chr2	-	1892	8	ISM	ENSMUSG00000039033.12	ENSMUST00000110079.9	2258	14	-22	143052	-22	0	5prime_fragment	FALSE	canonical	3	57	junction_2	18.1186565254081	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTTCTCAGTGTTTGCC	NA	False	NA	NA	False	NA	NA	NA	139908747	139818451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_139819634_139827048_139827129_139837992_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908673
transcript_53825.nnic	chr2	-	2127	7	NIC	ENSMUSG00000039033.12	novel	2258	14	NA	NA	-22	315	combination_of_known_splicesites	FALSE	canonical	3	13	junction_1	30.799080072842	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGTATTTTCTCAGTATGT	NA	False	NA	NA	False	AATAAA	-17	NA	139908747	139818136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_139819634_139837992_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908673
transcript_5383.known	chr1	+	855	5	FSM	ENSMUSG00000003464.14	ENSMUST00000147799.8	855	5	0	0	0	0	multi-exon	FALSE	canonical	3	412	junction_2	19.600701518058	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGTTTGACTGATTCATT	NA	False	NA	NA	False	TATAAA	-14	NA	171954322	171958578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_171954416_171956197_171956308_171956721_171956888_171957468_171957555_171958178
transcript_53833.nic	chr2	-	696	5	ISM	ENSMUSG00000039033.12	ENSMUST00000110079.9	2258	14	-22	175068	-22	-32016	5prime_fragment	FALSE	canonical	3	59	junction_4	19.0705925445435	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCTTGGATATAAGTTATT	NA	False	NA	NA	False	AATAAA	-14	NA	139908747	139850467	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908673
transcript_53834.known	chr2	-	438	1	FSM	ENSMUSG00000080006.5	ENSMUST00000116122.3	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	314	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGGATGCTGGGTTAA	NA	False	NA	-47	True	NA	NA	NA	139915389	139914951	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_139915000_139915400
transcript_53840.known	chr2	-	3396	14	FSM	ENSMUSG00000045624.16	ENSMUST00000046030.8	3396	14	0	0	0	0	multi-exon	TRUE	canonical	3	379	junction_8	12.585330053057	776	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCCGTTTGTATAGCATT	6977	False	NA	-12	True	AATAAA	-16	NA	140012484	139961802	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_139962826_139965450_139965598_139966847_139966925_139971119_139971208_139980852_139980975_139990672_139990835_139996713_139996862_139998974_139999090_140000399_140000553_140001613_140001715_140002302_140002417_140006128_140006503_140009691_140010376_140012396
transcript_5385.known	chr1	+	642	4	FSM	ENSMUSG00000003464.14	ENSMUST00000127662.2	642	4	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	205.496147571352	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACACATTTTCTGACAAATT	NA	False	NA	NA	False	NA	NA	NA	171954339	171957762	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_171954416_171956197_171956308_171956721_171956888_171957472
transcript_53854.known	chr2	+	1200	11	FSM	ENSMUSG00000027384.7	ENSMUST00000125913.2	1200	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	77.5835678478375	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGTTATGTTTCCCAGAA	NA	False	NA	11	True	AATAAA	-11	NA	140012949	140045552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_140013326_140013946_140013988_140019153_140019218_140023493_140023542_140025817_140025922_140029663_140029704_140030634_140030833_140035502_140035564_140044785_140044870_140045207_140045291_140045451
transcript_53866.known	chr2	+	1166	11	FSM	ENSMUSG00000027384.7	ENSMUST00000044825.5	1166	11	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_10	17.7042367810646	1259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACAGTTTGAAGCAAGGTG	NA	False	NA	10	True	AATAAA	-21	NA	140012568	140045609	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_140012854_140013946_140013988_140019153_140019218_140023493_140023542_140025817_140025922_140029663_140029704_140030634_140030833_140035502_140035564_140044785_140044870_140045207_140045291_140045451
transcript_53869.known	chr2	+	852	5	FSM	ENSMUSG00000068205.15	ENSMUST00000154505.8	852	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	31.0513687298966	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATAGTGATGTCATTTGT	NA	False	NA	NA	False	AATAAA	-15	NA	140237375	140487664	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_140237642_140242781_140242899_140294498_140294607_140437985_140438035_140487352
transcript_53870.known	chr2	+	1049	4	FSM	ENSMUSG00000068205.15	ENSMUST00000124403.2	1049	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	35.6495285928003	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGATTCCTGTTTATGCT	NA	False	NA	NA	False	AATAAA	-17	NA	140237379	140262415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_140237623_140242781_140242899_140260736_140260835_140261824
transcript_53871.known	chr2	+	887	4	FSM	ENSMUSG00000068205.15	ENSMUST00000110061.2	887	4	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	34.9380403953437	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGATTCCTGTTTATGCT	NA	False	NA	NA	False	AATAAA	-17	NA	140237514	140262415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_140237642_140242781_140242899_140260736_140260835_140261870
transcript_53873.nnic	chr2	+	794	3	NNC	ENSMUSG00000068205.15	novel	3552	4	NA	NA	0	-3104	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	33	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGGAACAATACATAGAC	NA	False	NA	NA	False	AATACA	-36	NA	140237354	140259311	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_140237642_140242781_140242899_140258921
transcript_53874.known	chr2	-	3977	3	FSM	ENSMUSG00000051379.13	ENSMUST00000110057.3	3977	3	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	10.5	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGTGTATCCTTTTTACT	NA	False	NA	1	True	AATAAA	-36	NA	140513389	140500117	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_140503672_140505180_140505380_140513165
transcript_53875.known	chr2	-	6383	26	FSM	ENSMUSG00000038844.11	ENSMUST00000043589.8	6383	26	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_14	9.18050107564941	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACAGTTACCTTCCATTGG	NA	False	NA	NA	False	AATAAA	-29	NA	142743451	142459393	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_142461837_142490347_142490432_142514208_142514299_142532498_142532622_142544542_142544594_142545861_142545959_142549178_142549332_142553614_142554959_142556598_142556653_142581442_142581532_142582828_142582912_142598008_142598147_142599816_142599869_142600709_142600830_142675996_142676057_142679436_142679503_142688848_142689025_142689910_142690043_142690212_142690382_142691783_142691927_142695546_142695657_142696353_142696452_142699230_142699348_142704346_142704461_142707263_142707334_142743244
transcript_5388.known	chr1	+	2754	14	FSM	ENSMUSG00000026554.16	ENSMUST00000191689.6	2754	14	0	0	0	0	multi-exon	TRUE	canonical	3	418	junction_1	55.9704063816991	660	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATTCTCTATGAATCCA	NA	False	NA	56	True	TTTAAA	-6	NA	171975684	172023074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_171975736_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015028_172016505_172016637_172020084_172020205_172021351_172021469_172022122
transcript_53880.known	chr2	+	2061	7	FSM	ENSMUSG00000008333.13	ENSMUST00000008477.13	2061	7	0	0	0	0	multi-exon	FALSE	canonical	3	784	junction_1	113.59540777103	3172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAACTATTCTGACAGA	1988	False	NA	NA	False	AATAAA	-19	NA	142904958	142914773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_142905019_142906461_142906551_142907095_142907269_142910180_142910322_142911293_142911345_142912807_142912897_142913315
transcript_53889.nic	chr2	+	474	4	ISM	ENSMUSG00000008333.13	ENSMUST00000008477.13	2061	7	-75	4516	-75	-1087	5prime_fragment	FALSE	canonical	3	784	junction_1	137.998389684646	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAAAAGAAGAAAGCTAAAA	1913	False	NA	NA	False	AAGAAA	-3	NA	142904883	142910257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_142905019_142906461_142906551_142907095_142907269_142910180
transcript_53893.known	chr2	+	949	4	FSM	ENSMUSG00000027416.3	ENSMUST00000028902.3	949	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGGAATTTTTTTTCTT	NA	False	NA	NA	False	TATAAA	-35	NA	142920392	142923633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_142920535_142920843_142920984_142921845_142921954_142923074
transcript_53894.known	chr2	-	2372	8	FSM	ENSMUSG00000027420.14	ENSMUST00000028907.14	2372	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	3.01018678652935	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCCTCGTGTAATTAATA	NA	False	NA	-2	True	ATTAAA	-25	NA	143705093	143668447	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_143669560_143672003_143672090_143673756_143673978_143683593_143683702_143687820_143687911_143690847_143690944_143699976_143700038_143704495
transcript_53895.known	chr2	+	333	1	FSM	ENSMUSG00000080711.4	ENSMUST00000122397.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTAATGGAGAGTAGATAAA	NA	False	NA	NA	False	NA	NA	NA	143723096	143723429	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_143723100_143723400
transcript_53898.known	chr2	+	1911	4	FSM	ENSMUSG00000015932.9	ENSMUST00000103172.4	1911	4	0	0	0	0	multi-exon	FALSE	canonical	3	1386	junction_2	119.658774112984	6803	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTCTTTGTGTGGTTAT	NA	False	NA	NA	False	AATAAA	-19	NA	143757239	143785244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_143757568_143780304_143780613_143781871_143781949_143784046
transcript_53899.known	chr2	-	5177	24	FSM	ENSMUSG00000027422.16	ENSMUST00000016072.12	5177	24	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_23	53.514586460919	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGGTTCTGTCTGATCTT	9758	False	NA	-1	True	ATTAAA	-20	NA	143853183	143789314	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_143789850_143790255_143790400_143791189_143791289_143791591_143791676_143792347_143792444_143794111_143794196_143795153_143795250_143795861_143795934_143796035_143796129_143796654_143796745_143796876_143796958_143797033_143797127_143798687_143798781_143799474_143799566_143805023_143805059_143805165_143805336_143806681_143806821_143809359_143809514_143810436_143810556_143811329_143811483_143815388_143815512_143816380_143816530_143830067_143832187_143852918
transcript_5390.known	chr1	+	2859	14	FSM	ENSMUSG00000026554.16	ENSMUST00000192704.6	2859	14	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_1	115.931269170995	586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGTATCAAGTTAAAATTA	NA	False	NA	15	True	ATTAAA	-17	NA	171975708	172023033	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_171975906_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015028_172016505_172016637_172020084_172020205_172021351_172021469_172022122
transcript_53900.known	chr2	-	2701	3	FSM	ENSMUSG00000027422.16	ENSMUST00000037875.6	2701	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	105	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCAGGAAGAGTCGTGCAG	9758	False	NA	1	True	AATAAA	-32	NA	143853183	143827772	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_143828090_143830067_143832187_143852918
transcript_53902.nic	chr2	-	533	2	ISM	ENSMUSG00000027422.16	ENSMUST00000037875.6	2701	3	-23	4169	-23	-4169	5prime_fragment	FALSE	canonical	3	227	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGAGAAACCTAATGGGA	9735	False	NA	55	True	AAAAAG	-42	NA	143853206	143831941	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_143832187_143852918
transcript_53903.known	chr2	-	886	1	FSM	ENSMUSG00000082480.2	ENSMUST00000118911.2	886	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGTTTTTATACAAGAAAAA	4906	False	NA	NA	False	NA	NA	NA	143985293	143984407	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_143984400_143985300
transcript_53907.known	chr2	+	2308	5	FSM	ENSMUSG00000027424.12	ENSMUST00000110028.8	2308	5	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	188.862383761299	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGTCTTTCAGTGGACC	NA	False	NA	14	True	AATAAA	-16	NA	144112582	144122436	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_144112935_144113834_144114405_144118234_144118452_144120913_144121047_144121400
transcript_53910.known	chr2	+	2359	5	FSM	ENSMUSG00000027424.12	ENSMUST00000110027.2	2359	5	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	194.922420465169	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGTCTTTCAGTGGACC	NA	False	NA	14	True	AATAAA	-16	NA	144112860	144122436	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_144113264_144113834_144114405_144118234_144118452_144120913_144121047_144121400
transcript_53918.known	chr2	-	138	1	FSM	ENSMUSG00000065725.3	ENSMUST00000083791.3	138	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGCAGTTGGTAATCAAGC	NA	False	NA	NA	False	NA	NA	NA	144103646	144103508	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_144103500_144103600
transcript_53919.known	chr2	-	2512	14	FSM	ENSMUSG00000027423.16	ENSMUST00000110030.10	2512	14	0	0	0	0	multi-exon	FALSE	canonical	3	1124	junction_13	126.932773522376	1085	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGTTTCTGACTGTTTT	NA	False	NA	NA	False	AAGAAA	-16	NA	144112826	144092042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_144093153_144094364_144094451_144095581_144095742_144096645_144096733_144096822_144096863_144097259_144097336_144097418_144097525_144099019_144099116_144099789_144099914_144100976_144101099_144102644_144102756_144103839_144103945_144112296_144112380_144112620
transcript_53920.known	chr2	-	2419	13	FSM	ENSMUSG00000027423.16	ENSMUST00000028909.5	2419	13	0	0	0	0	multi-exon	FALSE	canonical	3	1195	junction_10	117.133352305064	730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGTTTCTGACTGTTTT	NA	False	NA	NA	False	AAGAAA	-16	NA	144112492	144092042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_144093153_144094364_144094451_144095581_144095742_144096645_144096733_144096822_144096863_144097259_144097336_144097418_144097525_144099019_144099116_144099789_144099914_144100976_144101099_144102644_144102756_144103839_144103945_144112296
transcript_53921.known	chr2	+	2840	5	FSM	ENSMUSG00000027424.12	ENSMUST00000028910.9	2840	5	0	0	0	0	multi-exon	FALSE	canonical	3	360	junction_1	65.1517459474418	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAGGTGTATTTATAGGG	NA	False	NA	NA	False	AATAAA	-20	NA	144112819	144123147	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_144112993_144113834_144114405_144118234_144118452_144120913_144121047_144121400
transcript_53922.known	chr2	-	1539	4	FSM	ENSMUSG00000037279.14	ENSMUST00000037423.4	1539	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	4.64279609239471	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTCTTTTTTAAAATTTT	NA	False	NA	-12	True	AATAAA	-19	NA	144174066	144147094	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_144147840_144159630_144159821_144172823_144173042_144173680
transcript_53923.known	chr2	+	3299	11	FSM	ENSMUSG00000027425.19	ENSMUST00000147747.8	3299	11	0	0	0	0	multi-exon	FALSE	canonical	1	81	junction_2	109.46638753517	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCACTCAGCTTGTCTTT	NA	False	NA	40	True	NA	NA	NA	144210918	144249596	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_144211078_144215110_144215290_144217764_144217884_144222626_144222749_144231094_144231277_144235223_144235641_144235735_144236299_144242605_144242743_144244314_144244491_144245918_144246110_144248542
transcript_53924.known	chr2	+	3801	11	FSM	ENSMUSG00000027425.19	ENSMUST00000028911.15	3801	11	0	0	0	0	multi-exon	FALSE	canonical	1	121	junction_10	80.6347319707829	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCACTCAGCTTGTCTTT	NA	False	NA	40	True	NA	NA	NA	144210902	144249596	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_144211078_144215110_144215776_144217764_144217884_144222626_144222749_144231094_144231277_144235223_144235641_144235735_144236299_144242605_144242743_144244314_144244491_144245918_144246110_144248542
transcript_5393.known	chr1	-	2501	4	FSM	ENSMUSG00000013698.13	ENSMUST00000013842.12	2501	4	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_1	8.37987005998436	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGACTGATTCTAGAATCT	NA	False	NA	-4	True	AATAAA	-20	NA	172034371	172024294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_172026258_172026677_172026834_172027974_172028149_172034163
transcript_53931.known	chr2	+	693	2	FSM	ENSMUSG00000098387.3	ENSMUST00000183618.3	693	2	0	0	0	0	multi-exon	FALSE	canonical	3	459	junction_1	0	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGATCAGGCGTCAGTGG	NA	False	NA	NA	False	NA	NA	NA	144210915	144215641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_144211078_144215110
transcript_53934.known	chr2	+	1079	3	FSM	ENSMUSG00000083674.4	ENSMUST00000124788.2	1079	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	3.5	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCAAGTGTACGTTTTGGG	NA	False	NA	NA	False	AATAAA	-17	NA	144301199	144309714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_144301321_144306398_144306495_144308852
transcript_53938.known	chr2	+	4403	9	FSM	ENSMUSG00000027427.14	ENSMUST00000028914.9	4403	9	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_5	6.30352084156148	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTGTTTCTGGTATTAT	597	False	NA	8	True	GATAAA	-24	NA	144369637	144383915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_144369846_144370622_144370741_144374273_144374342_144375077_144375146_144376218_144376332_144377860_144378005_144378202_144378311_144379085_144379278_144380531
transcript_53945.known	chr2	+	2177	2	FSM	ENSMUSG00000027427.14	ENSMUST00000136999.2	2177	2	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAACCAAACC	621	False	NA	NA	False	NA	NA	NA	144369661	144372615	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_144369846_144370622
transcript_53948.known	chr2	-	2170	5	FSM	ENSMUSG00000027428.10	ENSMUST00000028915.6	2170	5	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_1	20.0873094266007	246	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTGACTGCTGTGGTGC	NA	False	NA	-9	True	AATAAA	-20	NA	144392789	144384184	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_144385930_144386293_144386380_144389913_144390020_144391023_144391067_144392599
transcript_53952.known	chr2	+	2779	20	FSM	ENSMUSG00000027429.17	ENSMUST00000028916.15	2779	20	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_1	107.06740569791	818	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGATTTTGTCTCATTTT	NA	False	NA	NA	False	AATAAA	-37	NA	144398175	144432669	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_144398263_144401126_144401362_144404051_144404110_144406485_144406573_144408682_144408920_144409020_144409107_144409802_144409948_144410535_144410695_144411019_144411136_144414398_144414523_144416586_144416668_144420251_144420342_144421216_144421324_144423863_144424018_144425610_144425689_144427517_144427680_144428293_144428381_144428785_144428942_144429421_144429488_144432205
transcript_53957.known	chr2	+	471	2	FSM	ENSMUSG00000074754.5	ENSMUST00000136628.2	471	2	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	0	4276	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACCAGTGTCTTCTTGAAG	NA	False	NA	NA	False	NA	NA	NA	144435973	144437286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_144436126_144436967
transcript_5396.known	chr1	+	4656	13	FSM	ENSMUSG00000026554.16	ENSMUST00000074144.11	4656	13	0	0	0	0	multi-exon	FALSE	canonical	3	475	junction_9	39.6410106105057	555	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTTTGTGTGGTATGTG	NA	False	NA	16	True	AGTAAA	-16	NA	171975744	172023956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015028_172016505_172016637_172020084_172020205_172021351_172021469_172022122
transcript_53961.known	chr2	+	1350	6	FSM	ENSMUSG00000027430.13	ENSMUST00000028917.7	1350	6	0	0	0	0	multi-exon	TRUE	canonical	3	290	junction_5	10.373041983912	1018	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTTTTCTGTAGAAATG	NA	False	NA	NA	False	ATTAAA	-20	NA	144441816	144610678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_144442012_144445707_144445799_144459111_144459348_144477677_144477785_144588820_144588994_144610130
transcript_5397.nnic	chr1	-	1519	11	NNC	ENSMUSG00000007122.12	novel	1847	11	NA	NA	358	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	2.13541565040626	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGTGTCTGTTGTTGAT	5753	False	NA	NA	False	AATAAA	-19	NA	172046924	172037461	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_172038071_172039514_172039590_172040594_172040696_172040903_172040959_172041372_172041419_172042578_172042710_172043043_172043118_172043475_172043588_172044360_172044462_172045456_172045542_172046794
transcript_53973.known	chr2	+	760	1	FSM	ENSMUSG00000027431.6	ENSMUST00000028918.4	760	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTTTGTCCTTTCATTGT	NA	False	NA	NA	False	AGTAAA	-24	NA	144665575	144666335	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_144665600_144666300
transcript_53974.known	chr2	-	464	1	FSM	ENSMUSG00000084178.2	ENSMUST00000121742.2	464	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTGTGTATGCGTTAATA	NA	False	NA	NA	False	NA	NA	NA	145352577	145352113	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_145352100_145352600
transcript_53997.known	chr2	+	331	4	FSM	ENSMUSG00000002728.15	ENSMUST00000165635.2	331	4	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	535.169132144222	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCTCTTCGTAAGAGTAT	NA	False	NA	NA	False	AAGAAA	-16	NA	145745172	145757471	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_145745283_145753616_145753684_145754312_145754449_145757453
transcript_54.known	ERCC-00111	+	978	1	FSM	ERCC-00111A	DQ883685	978	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2465	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00111_+_0_1000
transcript_54000.known	chr2	+	1142	6	FSM	ENSMUSG00000002728.15	ENSMUST00000110000.8	1142	6	0	0	0	0	multi-exon	FALSE	canonical	3	961	junction_2	184.608775522725	2866	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTAATCATCCCTGTC	NA	False	NA	31	True	TATAAA	-16	NA	145745160	145758345	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_145745283_145750510_145750536_145753592_145753684_145754312_145754449_145757453_145757600_145757723
transcript_54001.known	chr2	+	1172	6	FSM	ENSMUSG00000002728.15	ENSMUST00000002805.14	1172	6	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_3	436.248094551713	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTAATCATCCCTGTC	NA	False	NA	31	True	TATAAA	-16	NA	145745160	145758345	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_145745283_145750510_145750536_145753592_145753714_145754312_145754449_145757453_145757600_145757723
transcript_54005.nnic	chr2	+	749	3	NNC	ENSMUSG00000037143.18	novel	640	6	NA	NA	-13	-9606	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	0.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACGTCTCTTACTGCCATT	NA	False	NA	NA	False	AAAAAG	-3	NA	145776690	145786128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_145776761_145781759_145781912_145785601
transcript_54009.known	chr2	-	3428	14	FSM	ENSMUSG00000001767.6	ENSMUST00000001818.5	3428	14	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_8	24.6650940380394	421	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCACAGTGATTGTGTG	NA	False	NA	NA	False	ATTAAA	-16	NA	145776934	145759398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_145760521_145761659_145761909_145762516_145762619_145763691_145763932_145765763_145765845_145766634_145766695_145767427_145767620_145768695_145768867_145770040_145770220_145772453_145772621_145773189_145773349_145774165_145774258_145774732_145774886_145776473
transcript_5401.nic	chr1	-	832	3	ISM	ENSMUSG00000007122.12	ENSMUST00000170638.2	990	5	780	0	780	0	3prime_fragment	FALSE	canonical	3	3	junction_1	0	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGTGTCTGTTGTTGAT	NA	False	NA	NA	False	AATAAA	-19	NA	172040742	172037461	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_172038071_172039514_172039590_172040594
transcript_54015.known	chr2	+	2183	14	FSM	ENSMUSG00000074749.11	ENSMUST00000099278.9	2183	14	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_6	16.1728825562271	193	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTCACTGTAATTAGGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	146697783	146812017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_146697964_146703039_146703103_146705626_146705790_146712685_146712767_146730940_146731587_146732900_146733205_146777722_146777805_146783929_146784096_146784836_146784900_146792442_146792509_146794897_146794985_146798119_146798217_146811463_146811508_146811876
transcript_54019.known	chr2	+	3434	30	FSM	ENSMUSG00000027433.6	ENSMUST00000028921.6	3434	30	0	0	0	0	multi-exon	TRUE	canonical	3	956	junction_9	74.1082057489866	1025	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGTGTCTGGTGTCTGA	NA	False	NA	10	True	AATAAA	-22	NA	146854915	146919920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878583_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804_146916947_146919402
transcript_5402.known	chr1	-	6227	23	FSM	ENSMUSG00000007097.15	ENSMUST00000085913.11	6227	23	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_19	23.4067518690196	126	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCAGGGCCTGGGTTCTTG	NA	False	NA	0	True	AATAAA	-28	NA	172125631	172099275	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_172102297_172103484_172103577_172103687_172103790_172105823_172105955_172106101_172106248_172106437_172106562_172106879_172107035_172107234_172107404_172107502_172107654_172108135_172108273_172112066_172112243_172112335_172112526_172113220_172113356_172113530_172113641_172113764_172113964_172114766_172115036_172116867_172116986_172117819_172117955_172118177_172118292_172118759_172118964_172120893_172120954_172121138_172121244_172125447
transcript_54031.nic	chr2	+	1631	14	ISM	ENSMUSG00000027433.6	ENSMUST00000028921.6	3434	30	-241	43116	-241	-3403	5prime_fragment	FALSE	canonical	3	956	junction_9	69.62707084233	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGAGGATGAAGGTGAGT	NA	False	NA	NA	False	AAGAAA	-4	NA	146854674	146876804	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773
transcript_54032.nic	chr2	+	1601	13	ISM	ENSMUSG00000027433.6	ENSMUST00000028921.6	3434	30	-241	48023	-241	-8310	5prime_fragment	FALSE	canonical	3	956	junction_9	64.5890857653211	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATACATTGTAGTAGCTG	NA	False	NA	39	True	AAAAAG	-17	NA	146854674	146871897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788
transcript_54039.known	chr2	-	735	2	FSM	ENSMUSG00000087521.3	ENSMUST00000140987.3	735	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCGTGTGCTGGTTTGTTTT	NA	False	NA	NA	False	ATTAAA	-31	NA	147204713	147203460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_147203753_147204270
transcript_54044.known	chr2	+	1116	3	FSM	ENSMUSG00000036992.11	ENSMUST00000109961.8	1116	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	28	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATATGTCTAAATCTTGAGA	NA	False	NA	15	True	AATAAA	-19	NA	148514520	148517947	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_148514756_148516383_148516519_148517201
transcript_54045.known	chr2	+	956	2	FSM	ENSMUSG00000036992.11	ENSMUST00000047177.4	956	2	0	0	0	0	multi-exon	FALSE	canonical	3	586	junction_1	0	3789	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATATGTCTAAATCTTGAGA	NA	False	NA	15	True	AATAAA	-19	NA	148514545	148517947	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_148514756_148517201
transcript_54046.known	chr2	+	4232	6	FSM	ENSMUSG00000027439.10	ENSMUST00000028928.8	4232	6	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	11.7983049630021	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTCTGCTTTGTAAAAG	371	False	NA	NA	False	AATAAA	-18	NA	148522942	148534869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_148523136_148525513_148526889_148528433_148528529_148529923_148530092_148531995_148532154_148532626
transcript_54049.known	chr2	-	4412	11	FSM	ENSMUSG00000027438.15	ENSMUST00000028926.13	4412	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	5.93295878967653	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTTGACTGTTTTTTTGG	NA	False	NA	0	True	AATAAA	-18	NA	148574387	148535904	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_148539427_148540102_148540154_148540850_148540920_148542292_148542398_148544980_148545066_148545189_148545246_148548865_148548944_148549078_148549126_148551236_148551354_148554594_148554675_148574185
transcript_54050.known	chr2	-	4311	10	FSM	ENSMUSG00000027438.15	ENSMUST00000136513.2	4311	10	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	1.6629588385662	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTTGACTGTTTTTTTGG	NA	False	NA	0	True	AATAAA	-18	NA	148574333	148535904	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_148539427_148540102_148540154_148540850_148540920_148542292_148542398_148544980_148545066_148545189_148545246_148548865_148548944_148551236_148551354_148554594_148554675_148574185
transcript_54054.nnic	chr2	-	693	4	NNC	ENSMUSG00000027438.15	novel	3087	4	NA	NA	12	-2359	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6.64997911442	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGCTATCTTTAGTCTTT	NA	False	NA	NA	False	ATTAAA	-29	NA	148574375	148550696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_148551003_148551236_148551354_148554594_148554675_148574185
transcript_54055.known	chr2	+	602	3	FSM	ENSMUSG00000027444.3	ENSMUST00000028933.3	602	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGGATCCTTGAGCAG	NA	False	NA	NA	False	ATTAAA	-15	NA	148623928	148627857	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_148624229_148625268_148625380_148627666
transcript_54057.known	chr2	-	860	3	FSM	ENSMUSG00000027447.7	ENSMUST00000028938.7	860	3	0	0	0	0	multi-exon	FALSE	canonical	3	2071	junction_1	68	25892	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTTGAGTTGTTTCTGT	NA	False	NA	-6	True	ATTAAA	-20	NA	148717496	148713641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_148713964_148714736_148714851_148717072
transcript_54058.known	chr2	+	2050	4	FSM	ENSMUSG00000074736.11	ENSMUST00000109935.8	2050	4	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	14.290634073484	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCATGATTTACTTCATG	NA	False	NA	NA	False	NA	NA	NA	149672707	149846312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_149672846_149741337_149741896_149772824_149772963_149845096
transcript_54059.nic	chr2	+	1967	4	NIC	ENSMUSG00000074736.11	novel	620	2	NA	NA	49	-52	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	14.7044966667418	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTTTGCTTACGACTTT	NA	False	NA	NA	False	NA	NA	NA	149672890	149846260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_149672998_149741337_149741896_149772824_149772963_149845096
transcript_54060.known	chr2	-	4127	4	FSM	ENSMUSG00000068134.14	ENSMUST00000089207.13	4127	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	10.2089285540757	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGCCTGAGACTCTTCA	NA	False	NA	1	True	NA	NA	NA	149978628	149956325	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_149960121_149961484_149961549_149961744_149961872_149978487
transcript_54061.known	chr2	-	4181	4	FSM	ENSMUSG00000068134.14	ENSMUST00000122859.8	4181	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	24.3903441732356	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGCCTGAGACTCTTCA	NA	False	NA	1	True	NA	NA	NA	149978598	149956325	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_149960121_149961400_149961549_149961744_149961872_149978487
transcript_54062.known	chr2	-	4033	3	FSM	ENSMUSG00000068134.14	ENSMUST00000109931.8	4033	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	23.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGCCTGAGACTCTTCA	NA	False	NA	1	True	NA	NA	NA	149978598	149956325	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_149960121_149961744_149961872_149978487
transcript_54063.known	chr2	-	529	3	FSM	ENSMUSG00000068134.14	ENSMUST00000142792.2	529	3	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	6.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAGTTATGCTATACAACT	NA	False	NA	NA	False	NA	NA	NA	149978576	149961235	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_149961549_149961744_149961872_149978487
transcript_54068.nnic	chr2	+	2702	5	NNC	ENSMUSG00000060336.7	novel	2797	4	NA	NA	6	-6	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	10.5948100502085	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAACAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	150059998	150082639	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_150060119_150078611_150078739_150078948_150079010_150080162_150080882_150080964
transcript_54069.known	chr2	+	2797	4	FSM	ENSMUSG00000060336.7	ENSMUST00000073782.4	2797	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	5.35412613473634	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAAAAAACAG	NA	False	NA	NA	False	NA	NA	NA	150059992	150082645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_150060119_150078611_150078739_150078948_150079010_150080162
transcript_5407.known	chr1	+	2278	7	FSM	ENSMUSG00000038034.16	ENSMUST00000039506.15	2278	7	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_3	44.2329691017408	551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTGTTGTGTCTTCTCTT	3743	False	NA	19	True	AATAAA	-19	NA	172139933	172147408	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_172140161_172143717_172144096_172144921_172145384_172145603_172146012_172146120_172146535_172146859_172146991_172147150
transcript_54074.nnic	chr2	-	3597	5	NNC	ENSMUSG00000063364.11	novel	745	5	NA	NA	3	2997	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	8.03118920210451	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCTGAGCTCTGCTCT	NA	False	NA	NA	False	AATAAA	-14	NA	150204682	150181758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_150184778_150184860_150185076_150186228_150186290_150186499_150186627_150204507
transcript_54076.known	chr2	-	745	5	FSM	ENSMUSG00000063364.11	ENSMUST00000152036.8	745	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	9.3407708461347	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTCATCTTCGAAGGCAT	NA	False	NA	NA	False	NA	NA	NA	150204662	150184755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_150185076_150186228_150186290_150186499_150186627_150202030_150202113_150204507
transcript_54078.nnic	chr2	+	2092	4	NNC	ENSMUSG00000095315.3	novel	2159	4	NA	NA	40	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	53.766986979827	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACATTTTGGGGAGCATC	NA	False	NA	NA	False	AATAAA	-20	NA	150153390	150168932	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_150153479_150165648_150165749_150165947_150166009_150167089
transcript_54079.nic	chr2	-	3276	4	NIC	ENSMUSG00000063364.11	novel	745	5	NA	NA	3	2593	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	3.29983164553722	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGGAACTAAAGTTA	NA	False	NA	NA	False	ATTAAA	-8	NA	150204682	150182162	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_150185076_150186228_150186290_150186499_150186627_150204507
transcript_54080.known	chr2	-	650	4	FSM	ENSMUSG00000063364.11	ENSMUST00000051153.6	650	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	8.73053390247253	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTGTGTTTTTCAGCTCT	NA	False	NA	NA	False	NA	NA	NA	150204685	150152854	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_150153139_150186228_150186290_150186499_150186627_150204507
transcript_54081.known	chr2	-	555	3	FSM	ENSMUSG00000063364.11	ENSMUST00000124945.8	555	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	7.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCAGTGTGTTTTTCAGCT	NA	False	NA	NA	False	NA	NA	NA	150204653	150152856	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_150153139_150186499_150186627_150204507
transcript_54082.known	chr2	+	2159	4	FSM	ENSMUSG00000095315.3	ENSMUST00000238230.2	2159	4	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_3	5.43650214343336	510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACATTTTGGGGAGCATC	NA	False	NA	NA	False	AATAAA	-20	NA	150153350	150168932	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_150153479_150165621_150165749_150165947_150166009_150167089
transcript_54084.known	chr2	-	2922	4	FSM	ENSMUSG00000068130.12	ENSMUST00000109916.8	2922	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	3.29983164553722	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAACAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	150293406	150249060	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_150251710_150252860_150252922_150253130_150253258_150293321
transcript_54085.nic	chr2	-	450	3	ISM	ENSMUSG00000068130.12	ENSMUST00000109916.8	2922	4	-33	3656	-33	-2820	5prime_fragment	FALSE	canonical	2	6	junction_2	3.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAATGCCTGGTATCTAA	NA	False	NA	NA	False	NA	NA	NA	150293439	150252716	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_150252922_150253130_150253258_150293321
transcript_54086.nnic	chr2	-	3212	5	NNC	ENSMUSG00000074731.4	novel	2734	4	NA	NA	-32	3929	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	14.972892172189	72	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTAAATGCCTCATGTGTT	NA	False	NA	NA	False	ATTAAA	-19	NA	150327043	150308981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_150310326_150313808_150315345_150316415_150316477_150316675_150316803_150326899
transcript_54087.known	chr2	-	2734	4	FSM	ENSMUSG00000074731.4	ENSMUST00000109914.2	2734	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	6.12825877028341	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACATAAGAAAAAAAATCCAC	NA	False	NA	NA	False	NA	NA	NA	150327011	150312910	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_150315345_150316415_150316477_150316675_150316803_150326899
transcript_54093.known	chr2	-	2235	9	FSM	ENSMUSG00000033096.8	ENSMUST00000046399.7	2235	9	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_7	10.0054672554559	726	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTGCTGATTATTACT	999	False	NA	NA	False	AATAAA	-15	NA	150450487	150424999	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_150426109_150427682_150427876_150428300_150428436_150428911_150429087_150430822_150430940_150431952_150432046_150436221_150436338_150442163_150442281_150450307
transcript_54099.known	chr2	-	3618	14	FSM	ENSMUSG00000027452.12	ENSMUST00000028944.4	3618	14	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_13	14.5093318267649	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGATGTTTTTGGTTGAC	NA	False	NA	-5	True	AATAAA	-27	NA	150510178	150460024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_150461713_150463433_150463553_150466718_150466783_150466909_150467038_150467685_150467813_150468132_150468246_150469196_150469290_150470413_150470552_150471665_150471814_150479766_150479920_150480283_150480460_150484631_150484832_150501755_150501853_150509804
transcript_5410.nic	chr1	+	2493	6	ISM	ENSMUSG00000038034.16	ENSMUST00000039506.15	2278	7	-59	4	-59	2	intron_retention	FALSE	canonical	3	675	junction_3	48.3553513067582	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGAGGCCTGTTGTGTCTTC	3684	False	NA	15	True	AATAAA	-15	NA	172139874	172147404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_172140161_172143717_172144096_172144921_172145384_172145603_172146012_172146120_172146535_172146859
transcript_54101.nic	chr2	-	2842	11	NIC	ENSMUSG00000027452.12	novel	3618	14	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_10	53.8924855615326	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGATGTTTTTGGTTGAC	5026	False	NA	-5	True	AATAAA	-27	NA	150480063	150460024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_150461713_150463433_150463553_150466718_150466783_150466909_150467038_150467685_150467813_150468132_150468246_150469196_150469290_150470413_150470552_150471665_150471814_150479766_150479920_150479992
transcript_54104.nnic	chr2	+	2612	14	NNC	ENSMUSG00000033068.17	novel	2540	14	NA	NA	-9	-2	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_13	44.6562147387449	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTCTTTTGCCTCATTAG	NA	False	NA	10	True	AATAAA	-15	NA	150590952	150613593	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_150591154_150594929_150595254_150597962_150598040_150600662_150600807_150602022_150602099_150603152_150603189_150604295_150604385_150605485_150605566_150606034_150606100_150607369_150607472_150608878_150609017_150610784_150610842_150612211_150612325_150612483
transcript_54105.known	chr2	+	2540	14	FSM	ENSMUSG00000033068.17	ENSMUST00000094467.6	2540	14	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_1	18.2695141678424	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTTTGCCTCATTAGTG	NA	False	NA	12	True	AATAAA	-17	NA	150590961	150613595	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_150591154_150594929_150595254_150597962_150598040_150600662_150600807_150602022_150602099_150603152_150603189_150604295_150604385_150605485_150605566_150606034_150606100_150607369_150607472_150608878_150609017_150610784_150610842_150612211_150612325_150612548
transcript_54108.known	chr2	+	1135	8	FSM	ENSMUSG00000033068.17	ENSMUST00000146517.2	1135	8	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_1	20.4919098023327	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCTTCTTTGGTGCTTAT	NA	False	NA	NA	False	TTTAAA	-17	NA	150591011	150605732	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_150591154_150594929_150595254_150597962_150598040_150600662_150600807_150602022_150602099_150603152_150603189_150604295_150604385_150605485
transcript_54109.nnic	chr2	+	1159	7	NNC	ENSMUSG00000033068.17	novel	1135	8	NA	NA	-9	-1554	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_6	61.5729016875299	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGGCTGCGATGTGCTTG	NA	False	NA	NA	False	AAAAAG	-18	NA	150590952	150603717	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_150591154_150594929_150595254_150597962_150598040_150600662_150600807_150602022_150602099_150603152_150603189_150603416
transcript_54110.known	chr2	+	2893	6	FSM	ENSMUSG00000033068.17	ENSMUST00000147223.8	2893	6	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_1	23.1292023208757	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATGAAAAGAAATTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	150591000	150605271	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_150591154_150594929_150595254_150597962_150598040_150600662_150600807_150602022_150602099_150603152
transcript_54111.known	chr2	+	3909	20	FSM	ENSMUSG00000033059.8	ENSMUST00000045441.8	3909	20	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_10	16.3671517531211	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGGTATCTGCATTTCCA	NA	False	NA	23	True	ATTAAA	-23	NA	150628654	150673678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_150629031_150643457_150643560_150648112_150648192_150650716_150650821_150653173_150653306_150655310_150655423_150655840_150655924_150656905_150657050_150657537_150657631_150658669_150658817_150659557_150659722_150660765_150660881_150661793_150661896_150662654_150662803_150665895_150665955_150668248_150668391_150669024_150669233_150670363_150670499_150671547_150671615_150672281
transcript_54115.nic	chr2	+	613	2	ISM	ENSMUSG00000033059.8	ENSMUST00000045441.8	3909	20	8	29976	8	-12219	5prime_fragment	FALSE	canonical	3	128	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAAGACTGGTTTGAGTGG	NA	False	NA	NA	False	AATAAA	-10	NA	150628662	150643702	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_150629031_150643457
transcript_54116.known	chr2	-	1969	13	FSM	ENSMUSG00000032046.16	ENSMUST00000141899.8	1969	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	81.835709402029	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATTTATTGTTTTCTCTA	NA	False	NA	-29	True	AATAAA	-14	NA	150746651	150674436	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_150675061_150676198_150676327_150677192_150677272_150679271_150679355_150680230_150680315_150680660_150680699_150681639_150681770_150684165_150684212_150685310_150685342_150688163_150688284_150690271_150690378_150700279_150700405_150746276
transcript_54120.known	chr2	+	1087	7	FSM	ENSMUSG00000027454.11	ENSMUST00000028948.5	1087	7	0	0	0	0	multi-exon	FALSE	canonical	3	394	junction_1	28.3058690419888	2098	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGAATCTCCTGGTAGCTT	2422	False	NA	23	True	AATAAA	-30	NA	150751513	150773200	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_150751714_150754700_150754766_150758055_150758155_150759788_150759880_150767801_150767919_150769961_150770037_150772760
transcript_54121.known	chr2	+	648	5	FSM	ENSMUSG00000027454.11	ENSMUST00000140950.8	648	5	0	0	0	0	multi-exon	FALSE	canonical	3	394	junction_1	29.583568074186	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCGAGAGGAAGACAGTTT	2445	False	NA	NA	False	NA	NA	NA	150751536	150768017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_150751714_150754700_150754766_150758055_150758155_150759788_150759880_150767801
transcript_54122.known	chr2	-	5093	24	FSM	ENSMUSG00000068115.14	ENSMUST00000109896.8	5093	24	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_10	8.5081968705865	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTTTAAAGTTTTAAATT	7563	False	NA	2	True	ATTAAA	-18	NA	150851318	150776438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_150777360_150778866_150778981_150779473_150779642_150781772_150781887_150782591_150782751_150786500_150786571_150787003_150787109_150791258_150792300_150794404_150794713_150795225_150795333_150797491_150797625_150800475_150800557_150800670_150800782_150801687_150801863_150805274_150805416_150806053_150806191_150807997_150808163_150811899_150812053_150812943_150813135_150816023_150816091_150817709_150817883_150821352_150821450_150821917_150822112_150851150
transcript_54125.known	chr2	-	380	3	FSM	ENSMUSG00000053916.5	ENSMUST00000140124.2	380	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAGGTGCTGACAATAGG	NA	False	NA	NA	False	NA	NA	NA	150881282	150872676	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_150872837_150880535_150880630_150881156
transcript_54126.known	chr2	-	1394	2	FSM	ENSMUSG00000053916.5	ENSMUST00000066640.5	1394	2	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_1	0	1674	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTTAGAGTGATCTTGT	NA	False	NA	-1	True	ATTAAA	-38	NA	150881318	150871604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_150872837_150881156
transcript_54127.nnic	chr2	+	2982	3	Fusion	ENSMUSG00000082809.4_ENSMUSG00000083391.3	novel	1008	2	NA	NA	-72	151	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATCTAATAAGAAAGAAAGA	NA	False	NA	NA	False	AGTAAA	-21	NA	151215855	151302380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_+_151216441_151216472_151217257_151300767
transcript_54134.known	chr2	+	1364	9	FSM	ENSMUSG00000027455.17	ENSMUST00000028949.16	1364	9	0	0	0	0	multi-exon	FALSE	canonical	3	1010	junction_3	133.71979799192	4131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTACCAATTCTGTTATAT	NA	False	NA	19	True	AAGAAA	-1	NA	151336212	151353225	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_151336333_151338503_151338602_151342634_151342710_151344933_151345100_151346030_151346124_151347272_151347383_151348166_151348305_151351428_151351594_151352826
transcript_54135.known	chr2	+	1486	10	FSM	ENSMUSG00000027455.17	ENSMUST00000089140.13	1486	10	0	0	0	0	multi-exon	FALSE	canonical	1	251	junction_3	435.093348860014	513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAATTCTGTTATATAGAAA	NA	False	NA	24	True	AAGAAA	-6	NA	151336101	151353230	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_151336333_151338503_151338602_151342634_151342710_151344374_151344381_151344933_151345100_151346030_151346124_151347272_151347383_151348166_151348305_151351428_151351594_151352826
transcript_54136.known	chr2	-	433	3	FSM	ENSMUSG00000087433.2	ENSMUST00000148705.2	433	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGATTGGGCTATGACTCA	NA	False	NA	NA	False	NA	NA	NA	151384268	151382650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_151382806_151383342_151383525_151384172
transcript_54141.known	chr2	+	1658	5	FSM	ENSMUSG00000032966.15	ENSMUST00000044011.12	1658	5	0	0	0	0	multi-exon	FALSE	canonical	3	2063	junction_1	209.807501057517	2959	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTGTCATGGAGGTTGC	NA	False	NA	25	True	AATAAA	-26	NA	151384402	151403612	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_151384665_151384737_151384786_151399305_151399419_151401377_151401541_151402540
transcript_54142.known	chr2	+	783	6	FSM	ENSMUSG00000032966.15	ENSMUST00000142985.8	783	6	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_2	1104.02836920072	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGGGGTGAAGACTCAGT	NA	False	NA	9	True	CATAAA	-16	NA	151384504	151402748	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_151384665_151384737_151384786_151387344_151387436_151399305_151399419_151401377_151401541_151402540
transcript_54143.nnic	chr2	+	1563	10	Fusion	ENSMUSG00000032966.15_ENSMUSG00000027456.9	novel	783	6	NA	NA	-39	0	multi-exon	FALSE	canonical	2	5	junction_2	640.533130570172	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCGGTCATGAAAGTTCC	NA	False	NA	19	True	AATAAA	-19	NA	151384465	151431925	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_+_151384665_151384737_151384786_151424612_151424686_151425853_151425924_151426728_151426830_151428246_151428406_151428986_151429163_151429241_151429414_151431124_151431217_151431452
transcript_54144.known	chr2	+	1399	9	FSM	ENSMUSG00000027456.9	ENSMUST00000028950.9	1399	9	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	9.20258115965298	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCGGTCATGAAAGTTCC	NA	False	NA	19	True	AATAAA	-19	NA	151414541	151431925	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_151414625_151424612_151424686_151425853_151425924_151426728_151426830_151428246_151428406_151428986_151429163_151429241_151429414_151431124_151431217_151431452
transcript_54145.nnic	chr2	+	1517	9	NNC	ENSMUSG00000027456.9	novel	1399	9	NA	NA	3300	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	8.04285397107271	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCGGTCATGAAAGTTCC	NA	False	NA	19	True	AATAAA	-19	NA	151417841	151431925	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_151418043_151424612_151424686_151425853_151425924_151426728_151426830_151428246_151428406_151428986_151429163_151429241_151429414_151431124_151431217_151431452
transcript_54146.nnic	chr2	+	1474	9	NNC	ENSMUSG00000027456.9	novel	1399	9	NA	NA	3540	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	10.0987313559674	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCGGTCATGAAAGTTCC	NA	False	NA	19	True	AATAAA	-19	NA	151418081	151431925	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_151418240_151424612_151424686_151425853_151425924_151426728_151426830_151428246_151428406_151428986_151429163_151429241_151429414_151431124_151431217_151431452
transcript_54148.known	chr2	+	1435	2	FSM	ENSMUSG00000044364.6	ENSMUST00000060196.3	1435	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGGCTACTTGGCATTT	43	False	NA	NA	False	NA	NA	NA	151543927	151549230	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_151544366_151548233
transcript_54150.known	chr2	-	3306	5	FSM	ENSMUSG00000032869.16	ENSMUST00000155939.8	3306	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	143.726084967204	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACCATGCAGAGCAGAGT	NA	False	NA	NA	False	NA	NA	NA	151583213	151557981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_151560606_151561404_151561564_151562742_151562797_151571410_151571597_151582930
transcript_54151.known	chr2	+	2371	5	FSM	ENSMUSG00000032852.4	ENSMUST00000042217.4	2371	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.707106781186548	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAAACTTTGAGGACT	NA	False	NA	NA	False	AAGAAA	-4	NA	151684846	151716588	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_151685073_151709675_151709865_151710490_151710632_151711688_151711875_151714959
transcript_54153.known	chr2	-	1754	2	FSM	ENSMUSG00000027459.17	ENSMUST00000062047.6	1754	2	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	0	179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGGACTCTTCTCTGC	NA	False	NA	-1	True	AATAAA	-22	NA	151822139	151811317	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_151812845_151821912
transcript_54155.known	chr2	+	2669	5	FSM	ENSMUSG00000027463.15	ENSMUST00000073228.12	2669	5	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	24.8294180358703	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGACTTGTGTGCTCAC	NA	False	NA	18	True	NA	NA	NA	151838454	151851178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_151838572_151845971_151846599_151847451_151847940_151849400_151849525_151849865
transcript_54157.known	chr2	+	2590	5	FSM	ENSMUSG00000027463.15	ENSMUST00000109861.8	2590	5	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	23.0976189249022	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATCAAACTACTTAAAC	NA	False	NA	-18	True	NA	NA	NA	151841784	151851142	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_151841859_151845971_151846599_151847451_151847940_151849400_151849525_151849865
transcript_54159.known	chr2	+	446	2	FSM	ENSMUSG00000032802.9	ENSMUST00000137751.2	446	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCCTCTCCACATCAGCA	NA	False	NA	NA	False	NA	NA	NA	151947435	151951131	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_151947659_151950908
transcript_54160.known	chr2	+	2812	2	FSM	ENSMUSG00000032802.9	ENSMUST00000041500.8	2812	2	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_1	0	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAACAGTTTTGGTTGTG	NA	False	NA	31	True	NA	NA	NA	151947443	151953296	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_151947868_151950908
transcript_54168.nnic	chr2	+	1649	2	Genic_Genomic	ENSMUSG00000081434.4	novel	952	1	NA	NA	-168372	84	multi-exon	FALSE	canonical	0	0	junction_1	0	69466	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGCGGGTTGGAATTAA	NA	False	NA	NA	False	AATAAA	-32	NA	152027162	152196570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr2_+_152027654_152195412
transcript_54171.known	chr2	-	392	1	FSM	ENSMUSG00000081087.2	ENSMUST00000117430.2	392	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28506	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATGTAAAGCATAAATAAAAA	NA	False	NA	NA	False	AAAACA	-35	NA	152027602	152027210	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_152027200_152027600
transcript_54176.known	chr2	+	4206	13	FSM	ENSMUSG00000074698.11	ENSMUST00000099224.10	4206	13	0	0	0	0	multi-exon	FALSE	canonical	2	55	junction_1	32.1674222709181	738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCCATGCAGCCTGAGCAA	NA	False	NA	19	True	AATAAA	-20	NA	152068758	152123772	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_152068912_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888
transcript_5418.known	chr1	+	429	2	FSM	ENSMUSG00000102413.2	ENSMUST00000192957.2	429	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAAGCTGAGACATCTCTT	2417	False	NA	NA	False	NA	NA	NA	172150560	172151228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_172150733_172150971
transcript_54189.nic	chr2	+	482	3	ISM	ENSMUSG00000074698.11	ENSMUST00000133119.2	466	4	-35	3075	-3	1479	5prime_fragment	FALSE	canonical	2	4	junction_1	44.5	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTGAGTATAAGAAAAACAAT	NA	False	NA	NA	False	AAAAAG	-21	NA	152068792	152096241	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_152068953_152092321_152092532_152096129
transcript_5419.nnic	chr1	-	1572	3	Genic_Genomic	ENSMUSG00000102278.2	novel	2756	1	NA	NA	-39	34	multi-exon	FALSE	canonical	0	0	junction_1	0.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGACCTTTGTCTCAGGGT	1872	False	NA	NA	False	AATAAA	-1	NA	172218595	172215766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr1_-_172217087_172218114_172218215_172218443
transcript_54191.known	chr2	-	2252	13	FSM	ENSMUSG00000027466.16	ENSMUST00000028964.14	2252	13	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_12	150.053231295505	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAAGGTGTCATGCTTGA	NA	False	NA	-12	True	ATTAAA	-16	NA	152174573	152158253	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152165253_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953_152174043_152174415
transcript_54195.known	chr2	-	2384	12	FSM	ENSMUSG00000027466.16	ENSMUST00000109847.9	2384	12	0	0	0	0	multi-exon	FALSE	canonical	3	444	junction_6	68.3604931579153	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAAGGTGTCATGCTTGA	NA	False	NA	-12	True	ATTAAA	-16	NA	152174332	152158253	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152165253_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953
transcript_5420.known	chr1	-	2756	1	FSM	ENSMUSG00000102278.2	ENSMUST00000193540.2	2756	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCAGTGATTAAACATACC	1911	False	NA	NA	False	ATTAAA	-14	NA	172218556	172215800	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_172215800_172218600
transcript_54208.nnic	chr2	-	1974	4	NNC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	-5981	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	427.130737206615	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTTGGTGACTTTCTCT	NA	False	NA	-4	True	AATAAA	-29	NA	152191933	152179341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_152180608_152181634_152181928_152184956_152185248_152191809
transcript_54209.known	chr2	-	2026	4	FSM	ENSMUSG00000032715.10	ENSMUST00000040312.7	2026	4	0	0	0	0	multi-exon	FALSE	canonical	3	926	junction_3	7.71722460186015	1015	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTTGGTGACTTTCTCT	NA	False	NA	-4	True	AATAAA	-29	NA	152185952	152179341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_152180608_152181634_152181928_152184956_152185248_152185776
transcript_54218.known	chr2	-	1455	3	FSM	ENSMUSG00000059361.7	ENSMUST00000079278.5	1455	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCGTGGCTTCCTTTTGA	8689	False	NA	-2	True	AATAAA	-17	NA	152218558	152210674	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_152211844_152216015_152216211_152218467
transcript_54219.nnic	chr2	-	1331	3	NNC	ENSMUSG00000059361.7	novel	1455	3	NA	NA	-6	-3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0.5	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCAGCGTGGCTTCCTTT	8683	False	NA	-5	True	AATAAA	-14	NA	152218564	152210677	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_152211844_152216142_152216211_152218467
transcript_5422.known	chr1	+	1313	4	FSM	ENSMUSG00000026548.5	ENSMUST00000027830.5	1313	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	1.24721912892465	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCATCCTGTCTTTTTATT	NA	False	NA	NA	False	NA	NA	NA	172302924	172306142	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_172303107_172303699_172304042_172304772_172305046_172305626
transcript_54225.known	chr2	+	468	2	FSM	ENSMUSG00000044863.8	ENSMUST00000058086.6	468	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCAGCCTACTCATCTACA	NA	False	NA	NA	False	AATAAA	-19	NA	152446246	152454649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_152446466_152454400
transcript_54226.known	chr2	-	293	2	FSM	ENSMUSG00000074678.2	ENSMUST00000099203.2	293	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCCTGTGTTCTGCTTGG	NA	False	NA	NA	False	AATAAA	-16	NA	152464973	152464275	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_152464485_152464889
transcript_54228.known	chr2	+	1743	13	FSM	ENSMUSG00000019188.17	ENSMUST00000089059.9	1743	13	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_11	48.170054667466	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGAGCTCTCAGCAGCTC	NA	False	NA	21	True	ATTAAA	-35	NA	152511407	152546956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_152511685_152519461_152519561_152522970_152523054_152528017_152528107_152530582_152530669_152530756_152530883_152531763_152531822_152533712_152533797_152536406_152536444_152537401_152537505_152542102_152542189_152545914_152546115_152546541
transcript_54229.known	chr2	+	5204	12	FSM	ENSMUSG00000019188.17	ENSMUST00000125366.8	5204	12	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_7	14.82905345753	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGTCTCTTCTTATTCGT	NA	False	NA	NA	False	AAGAAA	-12	NA	152511380	152550590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_152511685_152519461_152519561_152522970_152523054_152528017_152528107_152530582_152530669_152530756_152530883_152531763_152531822_152533712_152533797_152536406_152536444_152537401_152537505_152542102_152542189_152546541
transcript_54239.nnic	chr2	+	739	5	NNC	ENSMUSG00000019188.17	novel	5204	12	NA	NA	1614	16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	71.0932486246057	98	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGCCTAGTGTTTCGTG	NA	False	NA	37	True	NA	NA	NA	152535372	152546972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_152535455_152536406_152536444_152537401_152537505_152542102_152542189_152546541
transcript_54240.nnic	chr2	+	918	5	NNC	ENSMUSG00000019188.17	novel	5204	12	NA	NA	1672	16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	71.0932486246057	104	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGCCTAGTGTTTCGTG	NA	False	NA	37	True	NA	NA	NA	152535430	152546972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_152535692_152536406_152536444_152537401_152537505_152542102_152542189_152546541
transcript_54242.known	chr2	+	1063	4	FSM	ENSMUSG00000019188.17	ENSMUST00000109825.8	1063	4	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_2	4.78423336480244	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAAAGGCTACGCCTGTT	NA	False	NA	NA	False	AATAAA	-16	NA	152511407	152528621	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_152511685_152519461_152519561_152522970_152523054_152528017
transcript_54243.known	chr2	+	2769	3	FSM	ENSMUSG00000019188.17	ENSMUST00000148156.2	2769	3	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_2	4.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTGGAGGTGTGTTTTCT	NA	False	NA	NA	False	ATTAAA	-12	NA	152511405	152525361	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_152511685_152519461_152519561_152522970
transcript_54246.nnic	chr2	+	607	2	Genic_Genomic	ENSMUSG00000042814.9	novel	912	1	NA	NA	109	-84	multi-exon	FALSE	canonical	3	34	junction_1	0	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGTGTGTGTCTGTATG	NA	False	NA	17	True	TATAAA	-13	NA	152529063	152529782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr2_+_152529294_152529405
transcript_54247.nnic	chr2	+	791	2	Genic_Genomic	ENSMUSG00000042814.9	novel	912	1	NA	NA	14	5	multi-exon	TRUE	canonical	3	34	junction_1	0	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGGGGTGTTGTAACCACAA	NA	False	NA	106	True	AATAAA	-28	NA	152528968	152529871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr2_+_152529294_152529405
transcript_54248.known	chr2	+	912	1	FSM	ENSMUSG00000042814.9	ENSMUST00000062148.9	912	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1374	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAATCGGGGTGTTGTAAC	NA	False	NA	101	True	AATAAA	-23	NA	152528954	152529866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_152529000_152529900
transcript_54249.nnic	chr2	+	959	3	NNC	ENSMUSG00000042745.10	novel	934	2	NA	NA	-9275	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	13.5	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGCTGTGACTTCTTGGA	5651	False	NA	13	True	ATTAAA	-17	NA	152568895	152579330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_152568977_152578226_152578666_152578891
transcript_54250.known	chr2	+	934	2	FSM	ENSMUSG00000042745.10	ENSMUST00000038368.9	934	2	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	0	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGCTGTGACTTCTTGGA	4422	False	NA	13	True	ATTAAA	-17	NA	152578170	152579330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_152578666_152578891
transcript_54251.known	chr2	+	1160	1	FSM	ENSMUSG00000042745.10	ENSMUST00000109824.2	1160	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGCTGTGACTTCTTGGA	4422	False	NA	13	True	ATTAAA	-17	NA	152578170	152579330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_152578200_152579300
transcript_54254.known	chr2	+	727	5	FSM	ENSMUSG00000009876.14	ENSMUST00000010020.12	727	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_4	3.69966214673719	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTTGGACTATCTGTTAT	NA	False	NA	NA	False	AATAAA	-31	NA	152596092	152606957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_152596145_152597074_152597160_152598929_152599095_152602557_152602690_152606664
transcript_54255.known	chr2	+	733	4	FSM	ENSMUSG00000009876.14	ENSMUST00000109821.2	733	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_3	4.18993502999218	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCCTTTGGACTATCTGT	NA	False	NA	NA	False	AATAAA	-28	NA	152597013	152606954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_152597160_152598929_152599095_152602557_152602690_152606664
transcript_54257.known	chr2	-	2568	3	FSM	ENSMUSG00000007659.19	ENSMUST00000109820.5	2568	3	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_2	91.5	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACCACAGCCTTGGCTCT	NA	False	NA	-9	True	AATAAA	-18	NA	152672586	152622591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_152624203_152671346_152672023_152672305
transcript_54258.nic	chr2	-	2437	3	NIC	ENSMUSG00000007659.19	novel	2417	3	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_2	154.5	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACAGCCTTGGCTCTGCGC	NA	False	NA	-5	True	AATAAA	-22	NA	152672606	152622587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_152624203_152671346_152672023_152672460
transcript_54259.known	chr2	-	2417	3	FSM	ENSMUSG00000007659.19	ENSMUST00000007803.12	2417	3	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_2	89.5	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACAGCCTTGGCTCTGCGC	NA	False	NA	-5	True	AATAAA	-22	NA	152673648	152622587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_152624203_152671346_152672023_152673522
transcript_54263.known	chr2	+	3483	18	FSM	ENSMUSG00000027469.17	ENSMUST00000109816.8	3483	18	0	0	0	0	multi-exon	FALSE	canonical	3	597	junction_2	86.1429969118501	588	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCTCTTGTTGTCCTAG	2708	False	NA	NA	False	NA	NA	NA	152689897	152736574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_152690030_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
transcript_54267.known	chr2	+	3654	18	FSM	ENSMUSG00000027469.17	ENSMUST00000028969.9	3654	18	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	172.681016802699	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCTCTTGTTGTCCTAG	2725	False	NA	NA	False	NA	NA	NA	152689914	152736574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_152690218_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
transcript_54276.known	chr2	+	4161	18	FSM	ENSMUSG00000027469.17	ENSMUST00000178997.8	4161	18	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_2	164.31464036434	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTTGCCTTGGTCATGG	2694	False	NA	13	True	NA	NA	NA	152689883	152737241	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_152690030_152696840_152696923_152709106_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
transcript_54289.known	chr2	+	1797	15	FSM	ENSMUSG00000074673.16	ENSMUST00000099197.9	1797	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.57790871674104	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGACGTTTTGATGTCTCT	1943	False	NA	NA	False	NA	NA	NA	152804404	152849260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_152804476_152814207_152814252_152818070_152818164_152824974_152825087_152826055_152826242_152831513_152831583_152831943_152832019_152833497_152833589_152835088_152835130_152835983_152836072_152841218_152841278_152842020_152842218_152844163_152844278_152844817_152844943_152848828
transcript_54297.known	chr2	-	1299	5	FSM	ENSMUSG00000027472.15	ENSMUST00000150545.8	1299	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	103.576964137785	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAGTTGTCACCCACC	8639	False	NA	NA	False	AATAAA	-21	NA	152857347	152850809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_152851657_152852177_152852259_152854300_152854376_152855929_152856006_152857127
transcript_5430.known	chr1	+	1586	5	FSM	ENSMUSG00000026547.16	ENSMUST00000111230.8	1586	5	0	0	0	0	multi-exon	FALSE	canonical	3	984	junction_4	118.904373342615	3541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGCTGTTTCTAGGGCC	NA	False	NA	29	True	AATAAA	-26	NA	172327613	172334947	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_172327900_172332686_172332895_172333327_172333503_172333752_172333856_172334133
transcript_54302.known	chr2	-	1273	5	FSM	ENSMUSG00000027472.15	ENSMUST00000028972.9	1273	5	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_2	13.6656503687164	1094	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAGTTGTCACCCACC	8639	False	NA	NA	False	AATAAA	-21	NA	152857347	152850809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_152851657_152852177_152852259_152854300_152854376_152855929_152856006_152857153
transcript_54303.nnic	chr2	+	2162	13	NNC	ENSMUSG00000003283.16	novel	2090	13	NA	NA	-805	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	20.5877188310572	55	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGGTCAGCTTCTCTGTCT	NA	False	NA	17	True	AATAAA	-27	NA	152949582	152993359	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_152949942_152966089_152966208_152970182_152970226_152970962_152971063_152971763_152971863_152973140_152973245_152975988_152976139_152976543_152976697_152978617_152978798_152980181_152980259_152986338_152986493_152990866_152990999_152992866
transcript_54304.known	chr2	+	2090	13	FSM	ENSMUSG00000003283.16	ENSMUST00000189688.2	2090	13	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_9	8.17346655682615	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGGTCAGCTTCTCTGTCT	NA	False	NA	17	True	AATAAA	-27	NA	152950387	152993359	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_152950675_152966089_152966208_152970182_152970226_152970962_152971063_152971763_152971863_152973140_152973245_152975988_152976139_152976543_152976697_152978617_152978798_152980181_152980259_152986338_152986493_152990866_152990999_152992866
transcript_54309.nic	chr2	+	553	3	ISM	ENSMUSG00000003283.16	ENSMUST00000189688.2	2090	13	-12	23041	-12	-23041	5prime_fragment	FALSE	canonical	3	96	junction_2	5.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAACAAAACAAAACA	NA	False	NA	NA	False	NA	NA	NA	152950375	152970318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_152950675_152966089_152966208_152970182
transcript_54311.known	chr2	+	3896	18	FSM	ENSMUSG00000068040.11	ENSMUST00000089027.3	3896	18	0	0	0	0	multi-exon	FALSE	canonical	3	350	junction_1	53.5920770883495	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAAGGGTGCGGATTGAAG	NA	False	NA	41	True	AATAAA	-30	NA	153003222	153052386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_153003492_153020808_153020923_153024307_153024408_153029182_153029352_153029450_153029584_153030873_153030998_153032750_153032870_153032970_153033083_153033849_153033921_153036196_153036330_153037230_153037313_153037409_153037486_153040269_153040354_153042562_153042739_153044257_153044322_153045701_153045822_153046454_153046545_153050526
transcript_54315.known	chr2	+	2274	17	FSM	ENSMUSG00000068040.11	ENSMUST00000137446.8	2274	17	0	0	0	0	multi-exon	FALSE	canonical	3	350	junction_1	54.9846214295415	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCTCAGCATTGTAATCT	NA	False	NA	NA	False	CATAAA	-15	NA	153003222	153046782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_153003492_153020808_153020923_153024307_153024408_153029182_153029352_153029450_153029584_153030873_153030998_153032750_153032870_153032970_153033083_153033849_153033921_153036196_153036330_153037230_153037313_153037409_153037486_153040269_153040354_153042562_153042739_153044257_153044322_153045701_153045822_153046454
transcript_54317.nic	chr2	+	740	5	ISM	ENSMUSG00000068040.11	ENSMUST00000147978.8	2473	9	-250	5922	-5	-1447	5prime_fragment	FALSE	canonical	3	350	junction_1	97.2326462665704	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGCAGTTTGAACATGGC	NA	False	NA	NA	False	AAAAAG	-1	NA	153003217	153029533	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_153003492_153020808_153020923_153024307_153024408_153029182_153029352_153029450
transcript_54318.known	chr2	+	5600	7	FSM	ENSMUSG00000046020.14	ENSMUST00000049863.12	5600	7	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_4	7.06320670013903	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATGCATGCCTTCATA	NA	False	NA	NA	False	NA	NA	NA	153083452	153112167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_153083646_153085557_153085680_153090368_153090552_153091600_153091714_153101519_153101713_153103117_153103361_153107614
transcript_54322.known	chr2	+	1385	7	FSM	ENSMUSG00000046020.14	ENSMUST00000099192.10	1385	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	37.4596078759805	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACCTTGGACTCCTCATC	NA	False	NA	NA	False	NA	NA	NA	153083470	153103822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_153083646_153085557_153085680_153090368_153090552_153091600_153091714_153101519_153101713_153103117_153103361_153103466
transcript_54323.known	chr2	+	5635	9	FSM	ENSMUSG00000027475.10	ENSMUST00000028977.7	5635	9	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	5.17052946998661	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGTCCTTGTCAGTGAT	7813	False	NA	10	True	AATAAA	-29	NA	153133332	153175310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_153133425_153158136_153159605_153162194_153162297_153162498_153162622_153162703_153162823_153164731_153164846_153165456_153165563_153171491_153171671_153171978
transcript_54324.known	chr2	-	427	2	FSM	ENSMUSG00000073236.5	ENSMUST00000139636.2	427	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGCAAGTGCTCTTACAGA	9012	False	NA	NA	False	NA	NA	NA	153187993	153184554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_153184785_153187796
transcript_54328.known	chr2	-	1343	10	FSM	ENSMUSG00000056941.18	ENSMUST00000109782.2	1343	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	72.7254264636584	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAAGCTCTGAATCCA	NA	False	NA	-19	True	ATTAAA	-17	NA	153474660	153460753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_153461433_153462365_153462415_153463689_153463740_153463963_153464055_153464570_153464609_153464691_153464749_153470384_153470488_153471112_153471167_153474107_153474183_153474513
transcript_54332.known	chr2	-	3210	9	FSM	ENSMUSG00000056941.18	ENSMUST00000071852.10	3210	9	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_3	11.9373363863133	603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTTATGGGTTTGTTTG	NA	False	NA	NA	False	ATTAAA	-14	NA	153474701	153458852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_153461433_153462365_153462415_153463689_153463740_153463963_153464055_153464570_153464609_153464691_153464749_153470384_153470488_153471112_153471167_153474513
transcript_5434.known	chr1	+	716	5	FSM	ENSMUSG00000026547.16	ENSMUST00000111228.2	716	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	495.253975249064	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCATGAATGGTTAATATA	NA	False	NA	NA	False	NA	NA	NA	172328818	172334300	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_172328882_172332686_172332895_172333327_172333503_172333752_172333856_172334133
transcript_54343.known	chr2	+	7336	7	FSM	ENSMUSG00000027479.15	ENSMUST00000028981.9	7336	7	0	0	0	0	multi-exon	FALSE	canonical	3	1002	junction_3	91.867204884732	1157	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAAATGGCTGTGTTTGG	NA	False	NA	NA	False	AATAAA	-20	NA	153583193	153615230	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_153583340_153588175_153588300_153597850_153597997_153599844_153600053_153603455_153603578_153606866_153607020_153608793
transcript_54344.nnic	chr2	+	776	7	NNC	ENSMUSG00000074665.12	novel	2420	17	NA	NA	10131	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	2.91070819942883	19	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGGGGTGTCTCCATGAA	NA	False	NA	NA	False	NA	NA	NA	153795973	153805772	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_153796057_153796182_153796354_153799049_153799118_153799638_153799682_153801569_153801634_153803435_153803513_153805502
transcript_54345.nic	chr2	+	890	6	ISM	ENSMUSG00000074665.12	ENSMUST00000099181.2	1479	13	10143	0	10143	0	3prime_fragment	FALSE	canonical	2	5	junction_4	2.13541565040626	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGGGGTGTCTCCATGAA	NA	False	NA	NA	False	NA	NA	NA	153795985	153805772	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_153796354_153799049_153799118_153799638_153799682_153801569_153801634_153803435_153803513_153805502
transcript_54348.nic	chr2	+	997	8	ISM	ENSMUSG00000027485.16	ENSMUST00000028987.7	1637	16	12369	0	12369	0	3prime_fragment	FALSE	canonical	1	1	junction_4	2.49897938350513	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGTTGTCCGGGTGTCT	NA	False	NA	NA	False	AATAAA	-14	NA	154054667	154062263	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_154055034_154055384_154055439_154055913_154056073_154057180_154057249_154058135_154058182_154059090_154059155_154060123_154060201_154062100
transcript_54358.nic	chr2	+	538	3	ISM	ENSMUSG00000027485.16	ENSMUST00000028987.7	1637	16	16558	0	16558	0	3prime_fragment	FALSE	canonical	2	4	junction_1	0	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGTTGTCCGGGTGTCT	NA	False	NA	NA	False	AATAAA	-14	NA	154058856	154062263	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_154059155_154060123_154060201_154062100
transcript_54361.known	chr2	+	1637	15	FSM	ENSMUSG00000038572.8	ENSMUST00000045959.8	1637	15	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	7.50951777032701	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTGTCTGAGTTTGCTG	NA	False	NA	5	True	AATAAA	-15	NA	154065661	154082822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_154065814_154066857_154067075_154069010_154069116_154069982_154070115_154070773_154070859_154070950_154071015_154071386_154071473_154072092_154072276_154074753_154074808_154075108_154075259_154076410_154076479_154076607_154076654_154078677_154078742_154080747_154080828_154082671
transcript_54365.nnic	chr2	+	495	4	NNC	ENSMUSG00000038572.8	novel	1637	15	NA	NA	12441	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	20.6074420214316	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTGTCTGAGTTTGCTG	NA	False	NA	5	True	AATAAA	-15	NA	154078102	154082822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_154078303_154078677_154078742_154080747_154080828_154082671
transcript_54367.known	chr2	-	2160	15	FSM	ENSMUSG00000027487.12	ENSMUST00000109731.8	2160	15	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_14	23.0212856251934	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTGTCTACTTTTTTCA	5389	False	NA	-9	True	AATAAA	-18	NA	154214930	154177299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_154177538_154184220_154184362_154187785_154187936_154190570_154190702_154192737_154192794_154194101_154194200_154195109_154195341_154196009_154196131_154202476_154202688_154207881_154207983_154210133_154210169_154210731_154210836_154212555_154212876_154214600_154214775_154214881
transcript_54369.known	chr2	-	1970	14	FSM	ENSMUSG00000027487.12	ENSMUST00000028990.10	1970	14	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_3	9.02265393460642	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGCTTCCTTGTCTACTT	5680	False	NA	-15	True	AATAAA	-12	NA	154214639	154177305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_154177538_154184220_154184362_154187785_154187936_154190570_154190702_154192737_154192794_154194101_154194200_154195109_154195341_154196009_154196131_154202476_154202688_154207881_154207983_154210133_154210169_154210731_154210836_154212555_154212876_154214600
transcript_54370.nnic	chr2	-	1969	9	NNC	ENSMUSG00000027488.13	novel	2131	8	NA	NA	-13177	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	53.6328665558722	18	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGTCTGTGGTTTGTGTC	NA	False	NA	1	True	AATAAA	-30	NA	154263196	154218232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_154218829_154218926_154219115_154219927_154220125_154222593_154222725_154222830_154223039_154225699_154225905_154245641_154245828_154254470_154254644_154263111
transcript_54373.nnic	chr2	-	1082	4	NNC	ENSMUSG00000027488.13	novel	2131	8	NA	NA	28596	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	56.9580742495936	19	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGTCTGTGGTTTGTGTC	NA	False	NA	1	True	AATAAA	-30	NA	154221304	154218232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_154218829_154218926_154219115_154219927_154220125_154221203
transcript_54374.nic	chr2	-	1198	4	ISM	ENSMUSG00000027488.13	ENSMUST00000109728.8	2131	8	27209	0	27090	0	3prime_fragment	FALSE	canonical	3	110	junction_1	13.6950923894494	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGTCTGTGGTTTGTGTC	NA	False	NA	1	True	AATAAA	-30	NA	154222810	154218232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_154218829_154218926_154219115_154219927_154220125_154222593
transcript_54375.known	chr2	+	6069	11	FSM	ENSMUSG00000038533.16	ENSMUST00000045270.15	6069	11	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_9	50.3348785634772	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGGACCAGACCTGGGGAA	5317	False	NA	37	True	AATAAA	-27	NA	154278414	154381276	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_154278557_154342319_154342464_154346472_154346715_154352427_154352518_154357736_154357919_154359628_154359883_154363070_154363157_154365823_154366020_154370756_154370826_154373141_154373333_154376803
transcript_54376.nic	chr2	+	1795	10	ISM	ENSMUSG00000038533.16	ENSMUST00000045270.15	6069	11	-11	7756	0	1	5prime_fragment	TRUE	canonical	3	422	junction_9	51.6952131413383	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACAGTCTACCACACACAC	5306	False	NA	13	True	AATAAA	-18	NA	154278403	154373520	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_154278557_154342319_154342464_154346472_154346715_154352427_154352518_154357736_154357919_154359628_154359883_154363070_154363157_154365823_154366020_154370756_154370826_154373141
transcript_5438.known	chr1	+	1908	12	FSM	ENSMUSG00000026546.17	ENSMUST00000085894.12	1908	12	0	0	0	0	multi-exon	TRUE	canonical	3	18	junction_1	6.26415751889171	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACAGCTCCACTTCACTGC	5422	False	NA	6	True	ATTAAA	-19	NA	172348610	172373437	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_172348749_172355356_172355483_172357376_172357520_172359647_172359793_172360097_172360269_172361512_172361692_172362777_172362908_172366045_172366193_172368053_172368168_172368751_172368946_172372658_172372884_172373241
transcript_54382.nic	chr2	+	628	2	ISM	ENSMUSG00000038533.16	ENSMUST00000099178.10	3247	9	0	25539	0	-3903	5prime_fragment	FALSE	canonical	3	587	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTAGGGCAACCCCTTGG	5306	False	NA	NA	False	NA	NA	NA	154278403	154342794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_154278557_154342319
transcript_54383.known	chr2	-	1829	13	FSM	ENSMUSG00000027489.16	ENSMUST00000000895.13	1829	13	0	0	0	0	multi-exon	TRUE	canonical	3	34	junction_6	10.0840220150494	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTCCCCTGTCTCT	7311	False	NA	-15	True	AATAAA	-24	NA	154400786	154386318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_154387088_154387174_154387267_154387945_154388024_154388147_154388261_154388589_154388644_154388720_154388801_154388956_154389076_154389344_154389482_154396566_154396665_154396819_154396846_154397503_154397613_154398976_154399002_154400657
transcript_54384.nnic	chr2	-	1893	13	NNC	ENSMUSG00000027489.16	novel	1829	13	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_6	11.513277359447	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTCCCCTGTCTCT	7283	False	NA	-15	True	AATAAA	-24	NA	154400814	154386318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_154387088_154387174_154387267_154387945_154388024_154388147_154388261_154388589_154388644_154388720_154388837_154388956_154389076_154389344_154389482_154396566_154396665_154396819_154396846_154397503_154397613_154398976_154399002_154400657
transcript_54389.nic	chr2	-	1220	12	NIC	ENSMUSG00000027489.16	novel	1829	13	NA	NA	-4	-78	intron_retention	FALSE	canonical	3	34	junction_5	10.4470328738723	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAGACTGCAGCCCTGCC	7283	False	NA	NA	False	NA	NA	NA	154400814	154387042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_154387267_154387945_154388024_154388147_154388261_154388589_154388644_154388720_154388801_154388956_154389076_154389344_154389482_154396566_154396665_154396819_154396846_154397503_154397613_154398976_154399002_154400657
transcript_5439.nic	chr1	+	1936	12	NIC	ENSMUSG00000026546.17	novel	699	5	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	9.63979355768114	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACAGCTCCACTTCACTGC	NA	False	NA	6	True	ATTAAA	-19	NA	172353579	172373437	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_172353746_172355356_172355483_172357376_172357520_172359647_172359793_172360097_172360269_172361512_172361692_172362777_172362908_172366045_172366193_172368053_172368168_172368751_172368946_172372658_172372884_172373241
transcript_54390.nnic	chr2	-	1256	12	NNC	ENSMUSG00000027489.16	novel	1829	13	NA	NA	-4	-78	intron_retention	FALSE	canonical	3	27	junction_5	11.9696586113693	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAGACTGCAGCCCTGCC	7283	False	NA	NA	False	NA	NA	NA	154400814	154387042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_154387267_154387945_154388024_154388147_154388261_154388589_154388644_154388720_154388837_154388956_154389076_154389344_154389482_154396566_154396665_154396819_154396846_154397503_154397613_154398976_154399002_154400657
transcript_54392.known	chr2	+	704	3	FSM	ENSMUSG00000038523.11	ENSMUST00000045116.11	704	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTCTGCCACTTCTG	NA	False	NA	NA	False	AATAAA	-15	NA	154390807	154391923	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_154390988_154391255_154391316_154391459
transcript_54393.known	chr2	-	2755	7	FSM	ENSMUSG00000027490.18	ENSMUST00000000894.6	2755	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	459.079392794851	1022	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGCTGGGTTTGAAACTCT	9674	False	NA	-21	True	AATAAA	-16	NA	154411640	154401553	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_154402856_154402950_154403171_154403266_154403382_154404857_154405011_154405814_154406035_154406337_154406429_154410986
transcript_54397.known	chr2	-	560	3	FSM	ENSMUSG00000000876.12	ENSMUST00000109703.3	560	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	94.5	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCAAGTTTTCTGTTTTG	NA	False	NA	NA	False	AATAAA	-30	NA	154445608	154437165	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_154437491_154438121_154438185_154445436
transcript_54398.known	chr2	+	3299	15	FSM	ENSMUSG00000059842.13	ENSMUST00000081926.13	3299	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	3.22062866217014	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTGAGTCTCAGAGATTC	5722	False	NA	25	True	AATAAA	-35	NA	154455216	154488741	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_154455323_154463672_154463784_154466774_154466972_154468697_154468848_154469807_154470054_154470719_154470916_154472328_154472420_154474198_154474390_154476006_154476198_154479933_154480143_154483235_154483333_154483901_154484035_154485408_154485521_154485706_154485778_154487543
transcript_54399.nnic	chr2	+	391	3	NNC	ENSMUSG00000059842.13	novel	3000	14	NA	NA	24	-27370	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	1.5	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCTAGTTTTATGGTTTT	5746	False	NA	NA	False	NA	NA	NA	154455240	154461328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_154455323_154460195_154460292_154461115
transcript_54400.nnic	chr2	+	377	2	NNC	ENSMUSG00000059842.13	novel	3000	14	NA	NA	-63	-27375	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	0	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAATGGTCTAGTTTTATG	5659	False	NA	NA	False	NA	NA	NA	154455153	154461323	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_154455323_154461115
transcript_54401.known	chr2	+	1616	5	FSM	ENSMUSG00000038467.16	ENSMUST00000044277.10	1616	5	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	13.5738719604982	714	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCTGTGTGTTCAGTCAAT	NA	False	NA	30	True	ATTAAA	-22	NA	154498937	154536705	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_154499292_154531437_154531616_154533129_154533245_154534468_154534596_154535863
transcript_54403.nnic	chr2	+	481	3	NNC	ENSMUSG00000038467.16	novel	1616	5	NA	NA	52	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	17	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGAGTTGCTGGGCTGCG	NA	False	NA	11	True	AATAAA	-19	NA	154498989	154536187	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_154499292_154531437_154531560_154536130
transcript_54404.known	chr2	+	731	4	FSM	ENSMUSG00000027596.11	ENSMUST00000029123.3	731	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAAGTGTGACTATTTCT	NA	False	NA	NA	False	AATACA	-20	NA	154855450	154892932	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_154855562_154887531_154887702_154889595_154889661_154892547
transcript_54405.known	chr2	+	510	2	FSM	ENSMUSG00000027596.11	ENSMUST00000148300.2	510	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGGAAGTGTGACTATTTC	NA	False	NA	NA	False	AATACA	-19	NA	154889534	154892931	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_154889661_154892547
transcript_5441.known	chr1	+	661	5	FSM	ENSMUSG00000026546.17	ENSMUST00000160531.2	661	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	8.78919791562347	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGCCGCTCCCTCTGCGC	5514	False	NA	NA	False	NA	NA	NA	172348702	172360298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_172348749_172355356_172355483_172357376_172357520_172359647_172359793_172360097
transcript_54410.known	chr2	+	1802	10	FSM	ENSMUSG00000027593.16	ENSMUST00000029120.14	1802	10	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_4	48.6369772452561	672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTCTGAGGTGGAATGG	NA	False	NA	6	True	AATAAA	-16	NA	154633052	154709164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_154633469_154662926_154663010_154699188_154699454_154701597_154701671_154701830_154701879_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
transcript_54412.nic	chr2	+	1509	9	NIC	ENSMUSG00000027593.16	novel	1802	10	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	44.2965856472031	901	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTCTGAGGTGGAATGG	NA	False	NA	6	True	AATAAA	-16	NA	154632980	154709164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_154633152_154662926_154663010_154699188_154699454_154701597_154701671_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
transcript_54413.known	chr2	+	1759	9	FSM	ENSMUSG00000027593.16	ENSMUST00000116389.9	1759	9	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_3	53.4051437129421	796	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTGCTTGTTTATTTTG	NA	False	NA	23	True	AATAAA	-33	NA	154633029	154709181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_154633469_154699188_154699454_154701597_154701671_154701830_154701879_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
transcript_54414.known	chr2	+	1747	9	FSM	ENSMUSG00000027593.16	ENSMUST00000058089.13	1747	9	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_2	14.5945195193264	984	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTGCTTGTTTATTTTG	NA	False	NA	23	True	AATAAA	-33	NA	154633076	154709181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_154633469_154662926_154663010_154699188_154699454_154701597_154701671_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
transcript_54416.nic	chr2	+	1436	8	NIC	ENSMUSG00000027593.16	novel	1802	10	NA	NA	-45	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	53.0813776484863	859	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTCTGAGGTGGAATGG	NA	False	NA	6	True	AATAAA	-16	NA	154632970	154709164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_154633152_154699188_154699454_154701597_154701671_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
transcript_54418.known	chr2	+	1709	8	FSM	ENSMUSG00000027593.16	ENSMUST00000109701.10	1709	8	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	30.0557305480255	919	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCTGAGGTGGAATGGT	NA	False	NA	7	True	AATAAA	-17	NA	154633015	154709165	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_154633469_154699188_154699454_154701597_154701671_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
transcript_54432.known	chr2	-	1041	4	FSM	ENSMUSG00000074656.13	ENSMUST00000161172.3	1041	4	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_3	5764.94448272391	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGAAAAAGAAGAA	3772	False	NA	-51	True	NA	NA	NA	154734715	154726294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_154726367_154729623_154729728_154730102_154730281_154734028
transcript_54439.known	chr2	-	2542	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	0	0	0	0	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	30950	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCATTGCTTTTGTGTGTT	3632	False	NA	-8	True	AATAAA	-32	NA	154734855	154713329	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
transcript_54440.known	chr2	-	2312	10	FSM	ENSMUSG00000074656.13	ENSMUST00000166171.8	2312	10	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	4169.46393510879	4433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTAGTGCTCCATTGCTTT	3785	False	NA	-16	True	AATAAA	-24	NA	154734702	154713337	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_154714091_154714159_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
transcript_54441.known	chr2	-	3785	3	FSM	ENSMUSG00000074656.13	ENSMUST00000147136.2	3785	3	0	0	0	0	multi-exon	FALSE	canonical	3	11792	junction_1	580	8511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAGAAGATGAAATACTAG	3736	False	NA	-19	True	AAAAAG	-24	NA	154734751	154726262	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_154729728_154730102_154730281_154734609
transcript_54443.known	chr2	-	2543	10	FSM	ENSMUSG00000027597.16	ENSMUST00000054607.16	2543	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	366.363443645113	1425	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTCTAAGTACCCTCTG	NA	False	NA	-8	True	AATAAA	-30	NA	154916417	154901229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907456_154907607_154909242_154909319_154910747_154910939_154916284
transcript_54444.known	chr2	+	1011	3	FSM	ENSMUSG00000109877.2	ENSMUST00000209399.2	1011	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAACCATCTCTATCGTCTT	NA	False	NA	NA	False	NA	NA	NA	154923239	154941426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_154923395_154924153_154924262_154940678
transcript_54445.known	chr2	+	1171	2	FSM	ENSMUSG00000027598.17	ENSMUST00000126648.8	1171	2	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAAAAACAGAGAA	NA	False	NA	NA	False	NA	NA	NA	154975428	154981209	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_154975506_154980115
transcript_54446.known	chr2	+	3711	6	FSM	ENSMUSG00000027598.17	ENSMUST00000138468.8	3711	6	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_2	28.3337254874822	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAATAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	154975443	155019067	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_154975506_154980115_154980193_155005312_155005404_155010603_155010746_155014376_155014502_155015853
transcript_54447.known	chr2	+	5309	26	FSM	ENSMUSG00000027598.17	ENSMUST00000109685.8	5309	26	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_2	35.1837689851443	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCATTTGCCTTTTCGTCTG	NA	False	NA	55	True	AATAAA	-15	NA	154975478	155068773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_154975506_154980115_154980193_154999693_154999896_155005312_155005404_155010603_155010746_155014376_155014502_155015853_155015992_155020961_155021008_155022473_155022632_155024077_155024274_155025654_155025751_155027349_155027525_155031356_155031427_155034045_155034131_155041254_155041384_155044126_155044200_155045200_155045273_155048212_155048302_155050978_155051139_155051906_155052041_155052359_155052501_155054256_155054378_155054917_155055023_155059910_155060008_155062127_155062201_155066286
transcript_54448.known	chr2	+	5159	25	FSM	ENSMUSG00000027598.17	ENSMUST00000029126.15	5159	25	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_8	21.5151351765836	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGCCTTTTCGTCTGCT	NA	False	NA	57	True	AATAAA	-17	NA	154975428	155068775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_154975506_154980115_154980193_155005312_155005404_155010603_155010746_155014376_155014502_155015853_155015992_155020961_155021008_155022473_155022632_155024077_155024274_155025654_155025751_155027349_155027525_155031356_155031427_155034045_155034131_155041254_155041384_155044126_155044200_155045200_155045273_155048212_155048302_155050978_155051139_155051906_155052041_155052359_155052501_155054256_155054378_155054917_155055023_155059910_155060008_155062127_155062201_155066286
transcript_5445.known	chr1	-	1410	2	FSM	ENSMUSG00000026544.7	ENSMUST00000027826.7	1410	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGTTTCTCAGGTGTTA	NA	False	NA	NA	False	AATAAA	-24	NA	172460529	172458330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_172459394_172460182
transcript_54453.known	chr2	+	788	4	FSM	ENSMUSG00000047459.15	ENSMUST00000150602.2	788	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	813.64788999228	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGAATCAGTTCGCCCTTG	NA	False	NA	-90	True	NA	NA	NA	155078527	155092055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_155078857_155084650_155084727_155089690_155089859_155091840
transcript_54454.known	chr2	+	534	4	FSM	ENSMUSG00000047459.15	ENSMUST00000135831.2	534	4	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	796.677405785359	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAAGGGTCGCTCTGCCCA	NA	False	NA	NA	False	NA	NA	NA	155078730	155092000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_155078861_155084650_155084727_155089690_155089859_155091840
transcript_54457.known	chr2	+	684	4	FSM	ENSMUSG00000047459.15	ENSMUST00000109682.9	684	4	0	0	0	0	multi-exon	FALSE	canonical	3	1428	junction_1	142.385236438177	11321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTGTGTCTTTACTAGA	NA	False	NA	19	True	AGTAAA	-21	NA	155078454	155092197	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_155078538_155084650_155084727_155089690_155089859_155091840
transcript_54458.known	chr2	+	1112	4	FSM	ENSMUSG00000027602.10	ENSMUST00000029128.4	1112	4	0	0	0	0	multi-exon	FALSE	canonical	3	435	junction_1	22.4251842554055	3249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGCCTCCAGCTGCTTGT	NA	False	NA	11	True	AATAAA	-23	NA	155118216	155119993	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_155118567_155118877_155118934_155119017_155119125_155119394
transcript_54459.known	chr2	+	826	3	FSM	ENSMUSG00000027602.10	ENSMUST00000154596.2	826	3	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_2	23	3270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCCTTTGCCTCCAGCTG	NA	False	NA	6	True	AATAAA	-18	NA	155118808	155119988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_155118934_155119017_155119125_155119394
transcript_54460.known	chr2	-	1636	12	FSM	ENSMUSG00000038383.17	ENSMUST00000077626.13	1636	12	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_4	21.4987987363815	721	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGTTCTGATGACATGT	NA	False	NA	0	True	AATAAA	-23	NA	155199350	155120162	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_155120570_155134609_155134753_155139002_155139128_155140965_155141110_155143120_155143276_155156421_155156520_155170500_155170602_155173068_155173179_155177280_155177344_155178601_155178662_155187567_155187633_155199185
transcript_54461.known	chr2	+	3979	4	FSM	ENSMUSG00000038375.16	ENSMUST00000043237.14	3979	4	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	13.490737563232	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTCTGCCTCAGCTGAG	4041	False	NA	9	True	AATAAA	-21	NA	155223733	155231770	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_155223938_155227209_155227385_155227800_155228090_155228459
transcript_54464.known	chr2	+	2931	18	FSM	ENSMUSG00000027605.19	ENSMUST00000029135.15	2931	18	0	0	0	0	multi-exon	FALSE	canonical	2	49	junction_8	8.02030295659528	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTTTTTTAGGTATCTG	2007	False	NA	19	True	AATAAA	-23	NA	155359867	155404666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_155360205_155363900_155364097_155391110_155391203_155391395_155391500_155391718_155391792_155392022_155392099_155392274_155392390_155397773_155397912_155398252_155398424_155398697_155398832_155399016_155399150_155399229_155399287_155399468_155399550_155400510_155400620_155402541_155402611_155402949_155403127_155403665_155403741_155403872
transcript_54470.known	chr2	-	1724	12	FSM	ENSMUSG00000027610.18	ENSMUST00000130881.8	1724	12	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_11	301.306960254025	974	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAATGACTCATTGTT	8446	False	NA	-10	True	AATAAA	-11	NA	155434634	155405108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_155405640_155406679_155406870_155408722_155408805_155409612_155409808_155413438_155413506_155414843_155414922_155415014_155415096_155419441_155419559_155420208_155420349_155420631_155420708_155423807_155423954_155434613
transcript_54472.known	chr2	+	727	3	FSM	ENSMUSG00000085317.2	ENSMUST00000130859.2	727	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGGCCGGGAAGGGGCATT	NA	False	NA	NA	False	NA	NA	NA	155433050	155434771	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_155433232_155433942_155434089_155434371
transcript_54475.known	chr2	+	3563	2	FSM	ENSMUSG00000027605.19	ENSMUST00000149788.2	3563	2	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAAAAACTAAACAACA	2092	False	NA	NA	False	ATTAAA	-33	NA	155359952	155367211	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_155360205_155363900
transcript_54476.known	chr2	+	674	2	FSM	ENSMUSG00000085317.2	ENSMUST00000155884.2	674	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGGAACTGGACGGCGGC	NA	False	NA	NA	False	NA	NA	NA	155433800	155434757	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_155434089_155434371
transcript_54478.known	chr2	-	1963	13	FSM	ENSMUSG00000027610.18	ENSMUST00000079691.13	1963	13	0	0	0	0	multi-exon	FALSE	canonical	3	779	junction_12	109.121491925285	2756	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTCATTGTTTCATGTAC	8350	False	NA	-2	True	AATAAA	-19	NA	155434730	155405100	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_155405640_155406679_155406870_155408722_155408805_155409612_155409808_155413438_155413506_155414843_155414922_155415014_155415096_155419441_155419559_155420208_155420349_155420631_155420708_155423807_155423954_155429361_155429497_155434613
transcript_54480.known	chr2	-	3204	19	FSM	ENSMUSG00000038324.14	ENSMUST00000041059.12	3204	19	0	0	0	0	multi-exon	TRUE	canonical	3	309	junction_12	37.6501520663235	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGACTTTGTCCATGATGT	NA	False	NA	7	True	ATTAAA	-42	NA	155534304	155476190	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_155477061_155477155_155477363_155478115_155478229_155479577_155479687_155479967_155480109_155481392_155481484_155482393_155482478_155483508_155483611_155485311_155485371_155486847_155486980_155492338_155492506_155495412_155495599_155499655_155499864_155505576_155505706_155508121_155508178_155510331_155510390_155512959_155513077_155514909_155515039_155534058
transcript_54481.known	chr2	+	6163	42	FSM	ENSMUSG00000074652.4	ENSMUST00000092995.6	6163	42	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	22.0244307592205	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATTTAATCGGTTTATTT	NA	False	NA	NA	False	AATAAA	-15	NA	155453131	155476227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_155453182_155453506_155453669_155455067_155455175_155455352_155455497_155455958_155456116_155456387_155456416_155457320_155457418_155459443_155459468_155459567_155459661_155459781_155459846_155460653_155460753_155462009_155462114_155462306_155462446_155462700_155462820_155462911_155463062_155463185_155463357_155464087_155464268_155464353_155464487_155464564_155464642_155465122_155465211_155465363_155465482_155467559_155467684_155467770_155467908_155468256_155468513_155469491_155469735_155470412_155470590_155470673_155470820_155471038_155471130_155471210_155471601_155472177_155472305_155472394_155472514_155472600_155472798_155472930_155473281_155473398_155473524_155473633_155473750_155474067_155474465_155474546_155474673_155474767_155474939_155475084_155475190_155475272_155475369_155475782_155475921_155475999
transcript_54487.nic	chr2	+	777	5	ISM	ENSMUSG00000074652.4	ENSMUST00000092995.6	6163	42	21597	0	-642	0	3prime_fragment	FALSE	canonical	3	70	junction_1	1.92028643696715	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATTTAATCGGTTTATTT	NA	False	NA	NA	False	AATAAA	-15	NA	155474728	155476227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_155474939_155475084_155475190_155475272_155475369_155475782_155475921_155475999
transcript_54488.known	chr2	+	674	2	FSM	ENSMUSG00000074652.4	ENSMUST00000154656.2	674	2	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAGCCACTGTCCTTATTT	NA	False	NA	11	True	AATAAA	-16	NA	155475370	155476123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_155475921_155475999
transcript_54493.known	chr2	-	2290	11	FSM	ENSMUSG00000038312.11	ENSMUST00000040833.5	2290	11	0	0	0	0	multi-exon	TRUE	canonical	3	287	junction_6	17.8672885463911	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGAGTGCATTAGCGTCAG	NA	False	NA	NA	False	AATAAA	-12	NA	155571395	155543596	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_155544513_155547574_155547697_155550851_155550997_155552763_155552889_155555257_155555400_155557929_155558142_155560183_155560310_155564351_155564458_155568554_155568595_155570810_155570922_155571150
transcript_54497.nnic	chr2	-	1724	10	NIC	ENSMUSG00000038312.11	novel	2290	11	NA	NA	4	-350	combination_of_known_splicesites	FALSE	canonical	3	9	junction_5	100.051961808494	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGGTTTTACATGCTGGAT	NA	False	NA	-11	True	AATAAA	-15	NA	155571391	155543946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_155544513_155547574_155547697_155550851_155550997_155552763_155552889_155555257_155555400_155560183_155560310_155564351_155564458_155568554_155568595_155570810_155570922_155571150
transcript_54500.known	chr2	+	1597	4	FSM	ENSMUSG00000027611.13	ENSMUST00000029140.12	1597	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.942809041582063	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCCATACCCTTTGCTCT	NA	False	NA	NA	False	ATTAAA	-21	NA	155593036	155597391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_155593385_155595264_155595523_155596159_155596448_155596688
transcript_54502.known	chr2	-	1615	2	FSM	ENSMUSG00000074649.7	ENSMUST00000124586.2	1615	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCTGTACAAACCTATGAAT	7099	False	NA	NA	False	NA	NA	NA	155661346	155659649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_155661004_155661085
transcript_54511.known	chr2	-	1382	2	FSM	ENSMUSG00000027613.16	ENSMUST00000109638.2	1382	2	0	0	0	0	multi-exon	TRUE	canonical	3	1052	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGTCCTTATGAAATG	NA	False	NA	NA	False	AATAAA	-16	NA	155668583	155667085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_155668131_155668246
transcript_54512.known	chr2	-	671	3	FSM	ENSMUSG00000027613.16	ENSMUST00000138962.8	671	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	802.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACTTGGCCCTTGTTAAT	89	False	NA	NA	False	NA	NA	NA	155668356	155664756	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_155664939_155665111_155665289_155668044
transcript_54522.known	chr2	-	1997	6	FSM	ENSMUSG00000005882.19	ENSMUST00000152818.8	1997	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	208.429940267707	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTCCTGGAATGGATGGA	NA	False	NA	-31	True	AATAAA	-20	NA	155771980	155688813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_155690447_155693278_155693393_155700031_155700052_155753665_155753757_155763554_155763646_155771932
transcript_54523.known	chr2	+	1254	8	FSM	ENSMUSG00000038241.17	ENSMUST00000109618.2	1254	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	9.61291648072041	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTAGTTAACTCATTCA	NA	False	NA	NA	False	AATAAA	-16	NA	155798513	155809714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_155798583_155803791_155804075_155804819_155804877_155805632_155805716_155806029_155806196_155806908_155807016_155807232_155807485_155809477
transcript_54531.known	chr2	+	1377	13	FSM	ENSMUSG00000005881.14	ENSMUST00000006035.13	1377	13	0	0	0	0	multi-exon	FALSE	canonical	3	758	junction_4	74.7846445171437	3023	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTCTCAGTGTGATT	NA	False	NA	16	True	AATAAA	-19	NA	155849964	155860199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_155850149_155850284_155850356_155850483_155850572_155850779_155850900_155852359_155852454_155853019_155853186_155853268_155853327_155857908_155857941_155858625_155858723_155858808_155858874_155859499_155859637_155859716_155859773_155859990
transcript_54553.known	chr2	+	1349	14	FSM	ENSMUSG00000005881.14	ENSMUST00000088650.11	1349	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	374.164742376764	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTCTCAGTGTGATT	NA	False	NA	16	True	AATAAA	-19	NA	155850025	155860199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_155850149_155850284_155850356_155850483_155850572_155850779_155850900_155852359_155852454_155853019_155853186_155853268_155853327_155857296_155857312_155857908_155857941_155858607_155858723_155858808_155858874_155859499_155859637_155859716_155859773_155859990
transcript_54554.known	chr2	+	1473	12	FSM	ENSMUSG00000038180.12	ENSMUST00000038860.12	1473	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	5.51781487472492	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGTTTGTGCTAAAGAA	NA	False	NA	12	True	ATTAAA	-23	NA	155907163	155911421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_155907592_155908053_155908159_155908486_155908554_155908724_155908787_155909008_155909053_155909231_155909258_155909374_155909484_155909666_155909743_155909856_155909973_155910290_155910459_155911056_155911147_155911239
transcript_54557.nic	chr2	+	1233	12	NIC	ENSMUSG00000038180.12	novel	747	9	NA	NA	-44	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	5.06486846443059	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGTTTGTGCTAAAGAA	NA	False	NA	12	True	ATTAAA	-23	NA	155907617	155911421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_155907806_155908053_155908159_155908486_155908554_155908724_155908787_155909008_155909053_155909231_155909258_155909374_155909484_155909666_155909743_155909856_155909973_155910290_155910459_155911056_155911147_155911239
transcript_5456.known	chr1	+	744	6	FSM	ENSMUSG00000037860.16	ENSMUST00000173023.2	744	6	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	14.8108068652589	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACAAAGAAGAGAGGAACAC	NA	False	NA	NA	False	NA	NA	NA	173248163	173287285	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_173248253_173255324_173255465_173280393_173280515_173281789_173281880_173282899_173283182_173287263
transcript_54563.known	chr2	-	3492	17	FSM	ENSMUSG00000074643.13	ENSMUST00000109608.9	3492	17	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_15	81.3740399328926	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCAGTGGCCGCTCTTGT	NA	False	NA	-5	True	AATAAA	-16	NA	155953863	155913766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155945268_155945318_155953705
transcript_54565.known	chr2	-	3441	16	FSM	ENSMUSG00000074643.13	ENSMUST00000109607.10	3441	16	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_15	28.8510350286124	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGGCCGCTCTTGTTG	NA	False	NA	-3	True	AATAAA	-18	NA	155953859	155913764	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155953705
transcript_54571.known	chr2	-	6635	3	FSM	ENSMUSG00000089824.11	ENSMUST00000109604.9	6635	3	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_2	80.5	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGCACAGTACTTCTTTG	NA	False	NA	-2	True	AATAAA	-37	NA	155953876	155933877	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_155940293_155945268_155945318_155953705
transcript_54573.known	chr2	-	6667	3	FSM	ENSMUSG00000089824.11	ENSMUST00000059647.12	6667	3	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_2	24	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGCACAGTACTTCTTTG	NA	False	NA	-2	True	AATAAA	-37	NA	155953876	155933877	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_155940293_155945268_155945350_155953705
transcript_54580.known	chr2	-	1058	3	FSM	ENSMUSG00000089824.11	ENSMUST00000131377.8	1058	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	146.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTCAAAGCAGCGTGAAGT	NA	False	NA	NA	False	ATTAAA	-25	NA	155953836	155939404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_155940293_155945268_155945350_155953747
transcript_54581.known	chr2	-	2051	13	FSM	ENSMUSG00000027618.18	ENSMUST00000029147.16	2051	13	0	0	0	0	multi-exon	TRUE	canonical	3	228	junction_1	23.0952135493242	495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCTTGAATTTTTGAGC	3106	False	NA	-2	True	AATAAA	-17	NA	155986106	155965558	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_155966248_155967200_155967291_155968238_155968323_155968930_155969013_155969585_155969692_155970357_155970516_155973572_155973708_155974552_155974647_155976325_155976479_155981648_155981733_155984045_155984163_155985286_155985379_155985939
transcript_54582.known	chr2	-	709	3	FSM	ENSMUSG00000027618.18	ENSMUST00000109600.2	709	3	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_2	22	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCGCGGGTCAATGGGAC	3112	False	NA	0	True	TTTAAA	-6	NA	155986100	155983706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_155984163_155985286_155985379_155985939
transcript_54583.known	chr2	+	550	2	FSM	ENSMUSG00000067847.14	ENSMUST00000109597.10	550	2	0	0	0	0	multi-exon	FALSE	canonical	3	985	junction_1	0	718	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCAGTCTATTTTTACCTA	6545	False	NA	14	True	AATAAA	-19	NA	155986152	155987714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_155986510_155987521
transcript_54584.known	chr2	+	379	3	FSM	ENSMUSG00000067847.14	ENSMUST00000119950.2	379	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	474	636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCAGTCTATTTTTACCTA	6552	False	NA	14	True	AATAAA	-19	NA	155986159	155987714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_155986201_155986364_155986510_155987521
transcript_54617.known	chr2	-	2810	17	FSM	ENSMUSG00000027620.17	ENSMUST00000109587.9	2810	17	0	0	0	0	multi-exon	FALSE	canonical	3	1358	junction_5	409.933526432945	5088	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCGTTTTTCAAATGTTT	NA	False	NA	NA	False	AATAAA	-27	NA	156022158	155989158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021161_156021806
transcript_54618.known	chr2	-	2120	18	FSM	ENSMUSG00000027620.17	ENSMUST00000155837.8	2120	18	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_15	717.627699835322	620	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGTGCTCATTATCCC	NA	False	NA	0	True	AATAAA	-15	NA	156022096	155989859	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156020799_156020873_156021096_156021161_156021806
transcript_54619.known	chr2	-	2711	17	FSM	ENSMUSG00000027620.17	ENSMUST00000029149.13	2711	17	0	0	0	0	multi-exon	FALSE	canonical	3	1090	junction_5	453.136943808105	1386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAAGAAAATTTTCGTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	156022087	155989168	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996192_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021161_156021806
transcript_5462.known	chr1	-	2636	10	FSM	ENSMUSG00000026526.15	ENSMUST00000027810.14	2636	10	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_3	99.2506491566916	2695	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCAATAGACTAATTTTTAT	792	False	NA	NA	False	AATAAA	-21	NA	175453201	175427939	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_175429133_175431503_175431658_175433620_175433749_175435382_175435587_175437202_175437369_175439712_175439896_175442302_175442480_175444094_175444206_175446616_175446752_175453016
transcript_54620.known	chr2	-	2127	18	FSM	ENSMUSG00000027620.17	ENSMUST00000153514.8	2127	18	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_15	799.195928097666	3243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGTGCTCATTATCCC	NA	False	NA	0	True	AATAAA	-15	NA	156022104	155989859	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156016016_156016089_156019255_156019306_156021096_156021161_156021806
transcript_54621.known	chr2	-	1008	2	FSM	ENSMUSG00000027620.17	ENSMUST00000128243.2	1008	2	0	0	0	0	multi-exon	FALSE	canonical	3	2349	junction_1	0	1190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGAGGAAAAAAAACC	NA	False	NA	-32	True	AATAGA	-8	NA	156022132	156020478	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_156021161_156021806
transcript_54622.known	chr2	-	699	5	FSM	ENSMUSG00000027620.17	ENSMUST00000152919.3	699	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	947.747988655212	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGGCCATGAAGAACGTAGC	NA	False	NA	-26	True	NA	NA	NA	156022069	156019280	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_156019306_156019552_156019827_156020799_156020873_156021096_156021161_156021806
transcript_54623.known	chr2	-	715	3	FSM	ENSMUSG00000027620.17	ENSMUST00000137340.2	715	3	0	0	0	0	multi-exon	FALSE	canonical	3	533	junction_1	908	1938	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GCAAAAAAGAGGAAAAAAAA	NA	False	NA	-34	True	AATAGA	-6	NA	156022065	156020480	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_156020873_156021096_156021161_156021806
transcript_54624.known	chr2	-	593	6	FSM	ENSMUSG00000027620.17	ENSMUST00000147098.8	593	6	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	953.776787304032	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGCAAAAGTCGAGAGCG	NA	False	NA	-6	True	AGTAAA	-34	NA	156022067	156014851	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_156014943_156016016_156016089_156018322_156018378_156019255_156019306_156021096_156021161_156021806
transcript_54625.known	chr2	+	5737	18	FSM	ENSMUSG00000038116.17	ENSMUST00000037401.10	5737	18	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_1	27.9815806939402	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCAGTCACATTACTG	NA	False	NA	9	True	AATAAA	-18	NA	156038561	156151872	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_156038718_156065254_156065370_156093695_156093868_156096145_156096231_156106200_156106281_156109074_156109463_156114461_156114576_156115602_156115792_156118408_156118589_156129720_156130000_156134385_156134485_156135333_156135499_156136016_156136196_156138568_156138669_156140440_156140637_156144702_156145100_156146550_156146735_156149213
transcript_54626.nic	chr2	+	1837	11	ISM	ENSMUSG00000038116.17	ENSMUST00000037401.10	5737	18	-16	17424	-16	0	5prime_fragment	FALSE	canonical	3	289	junction_1	26.5510828404417	562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAGAAAAAGAAAAAGAAA	NA	False	NA	NA	False	ACTAAA	-38	NA	156038545	156134448	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_156038718_156065254_156065370_156093695_156093868_156096145_156096231_156106200_156106281_156109074_156109463_156114461_156114576_156115602_156115792_156118408_156118589_156129720_156130000_156134385
transcript_54637.known	chr2	+	5524	17	FSM	ENSMUSG00000038116.17	ENSMUST00000152617.8	5524	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	116.307176799198	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATGTGTCAGTCACATTA	NA	False	NA	6	True	AATAAA	-15	NA	156038653	156151869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_156038718_156093695_156093868_156096145_156096231_156106200_156106281_156109074_156109463_156114461_156114576_156115602_156115792_156118408_156118589_156129720_156130000_156134385_156134485_156135333_156135499_156136016_156136200_156138575_156138669_156140440_156140637_156144702_156145100_156146550_156146735_156149213
transcript_5465.nnic	chr1	+	1598	6	NNC	ENSMUSG00000026523.15	novel	2161	16	NA	NA	-8223	32691	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	8.03492377064027	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATTAACTTCTAGGTATTA	NA	False	NA	NA	False	AATAAA	-21	NA	175586380	175604143	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_175586400_175591507_175591635_175594571_175594721_175597071_175597196_175599738_175599915_175603140
transcript_54651.known	chr2	+	2277	13	FSM	ENSMUSG00000038085.14	ENSMUST00000037096.9	2277	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	2.37463447479583	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGCTTCTCTGTTCTCTGT	9994	False	NA	2	True	AATAAA	-12	NA	156154218	156217555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_156154720_156161929_156161984_156170237_156170376_156175498_156175553_156177169_156177334_156180494_156180652_156181050_156181203_156183521_156183661_156195114_156195230_156207038_156207217_156209476_156209598_156215565_156215730_156217215
transcript_54657.known	chr2	+	279	1	FSM	ENSMUSG00000081751.2	ENSMUST00000122133.2	279	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	289	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCCTGCTGTCTGAGACT	NA	False	NA	NA	False	NA	NA	NA	156164321	156164600	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_156164300_156164600
transcript_54658.known	chr2	-	4915	1	FSM	ENSMUSG00000102869.3	ENSMUST00000192863.3	4915	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGGCGTCTCTACTGC	NA	False	NA	NA	False	AATAAA	-17	NA	156234899	156229984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_156230000_156234900
transcript_54665.known	chr2	-	278	1	FSM	ENSMUSG00000061272.9	ENSMUST00000117690.2	278	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1113	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCCCTGCTGTCTGAGAC	NA	False	NA	NA	False	NA	NA	NA	156253094	156252816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_156252800_156253100
transcript_54667.known	chr2	+	6251	22	FSM	ENSMUSG00000027624.21	ENSMUST00000109577.9	6251	22	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_14	33.5816600417023	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGACTCCCTCAGCCTC	7844	False	NA	13	True	AATAAA	-28	NA	156263031	156385134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_156263220_156280504_156280554_156335823_156336015_156336876_156337042_156337779_156337885_156338405_156338449_156341506_156341583_156345564_156345784_156347685_156347774_156348270_156348424_156350732_156350831_156351051_156351228_156352652_156352802_156355947_156356131_156366800_156367209_156368808_156368914_156371309_156371391_156375700_156375788_156376605_156376690_156378899_156378981_156379286_156379404_156381729
transcript_54668.known	chr2	+	5904	21	FSM	ENSMUSG00000027624.21	ENSMUST00000109574.8	5904	21	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_12	32.516303602962	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGACTCCCTCAGCCTC	7780	False	NA	13	True	AATAAA	-28	NA	156262967	156385134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_156263220_156280504_156280554_156335823_156336015_156336876_156337042_156337779_156337885_156338405_156338449_156341506_156341583_156345564_156345784_156347685_156347774_156348270_156348424_156350732_156350831_156351051_156351228_156352655_156352802_156355947_156356131_156368808_156368914_156371309_156371391_156375700_156375788_156376605_156376690_156378899_156378981_156379286_156379404_156381729
transcript_54670.known	chr2	+	2766	5	FSM	ENSMUSG00000027628.11	ENSMUST00000109570.8	2766	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	64.1190299365173	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCCCCTGTGTGAGTCTC	NA	False	NA	7	True	ATTAAA	-18	NA	156389503	156410076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_156389804_156391804_156391948_156392568_156393370_156397746_156397977_156408784
transcript_54672.nnic	chr2	+	2360	4	NNC	ENSMUSG00000027628.11	novel	2766	5	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	61.0482504981829	68	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCCCCTGTGTGAGTCTC	NA	False	NA	7	True	ATTAAA	-18	NA	156389507	156410076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_156389545_156392568_156393370_156397746_156397977_156408784
transcript_5468.known	chr1	+	7796	15	FSM	ENSMUSG00000039748.12	ENSMUST00000039725.12	7796	15	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_2	66.5922714152693	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGACTTGTATCTTTTT	9553	False	NA	NA	False	NA	NA	NA	175708146	175741055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_175708423_175708697_175708767_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720628_175721306_175721401_175723693_175723920_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175735995
transcript_54684.known	chr2	+	1281	7	FSM	ENSMUSG00000061689.16	ENSMUST00000171030.9	1281	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	137.848548132442	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAGAGAGTGCGGACAGC	NA	False	NA	NA	False	NA	NA	NA	156562981	156604764	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_156563008_156587754_156588117_156590251_156590324_156590863_156591277_156602770_156602863_156603692_156603849_156604604
transcript_54686.nnic	chr2	+	1853	7	NNC	ENSMUSG00000061689.16	novel	4840	13	NA	NA	9096	0	intron_retention	FALSE	canonical	3	40	junction_1	119.417219119448	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAACAGCGTTTCTCACCC	NA	False	NA	11	True	ATTAAA	-14	NA	156572507	156604875	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_156572978_156587754_156588117_156590251_156590341_156590863_156591277_156602770_156602863_156603692_156603849_156604604
transcript_54687.nnic	chr2	+	1898	7	NNC	ENSMUSG00000061689.16	novel	4840	13	NA	NA	9220	0	intron_retention	FALSE	canonical	3	40	junction_1	119.417219119448	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCTAGAACCTTTTCCC	NA	False	NA	NA	False	NA	NA	NA	156572631	156605044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_156572978_156587754_156588117_156590251_156590341_156590863_156591277_156602770_156602863_156603692_156603849_156604604
transcript_54709.nnic	chr2	-	571	5	NNC	ENSMUSG00000087179.9	novel	388	3	NA	NA	-8	30833	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	68.0418070012841	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGTCTTAGCTGCATTT	NA	False	NA	NA	False	NA	NA	NA	156681728	156644135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_156644337_156645656_156645724_156679742_156679834_156680337_156680457_156681635
transcript_54710.nnic	chr2	-	602	5	NNC	ENSMUSG00000087179.9	novel	388	3	NA	NA	-30	30833	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	73.08385594644	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGTCTTAGCTGCATTT	NA	False	NA	NA	False	NA	NA	NA	156681842	156644135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_156644337_156645656_156645724_156679742_156679834_156680337_156680457_156681718
transcript_54725.nnic	chr2	-	706	4	NNC	ENSMUSG00000087179.9	novel	388	3	NA	NA	-9	59868	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_1	68.5127725318426	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTGGTCATAGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	156681821	156615100	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_156615230_156679742_156679834_156680337_156680457_156681454
transcript_54726.nnic	chr2	-	546	4	NNC	ENSMUSG00000087179.9	novel	388	3	NA	NA	-30	59868	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_1	67.4009561422454	54	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTGGTCATAGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	156681842	156615100	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_156615230_156679742_156679834_156680337_156680457_156681635
transcript_54729.nnic	chr2	-	1264	4	Fusion	ENSMUSG00000087179.9_ENSMUSG00000082196.4	novel	388	3	NA	NA	0	134	multi-exon	FALSE	canonical	3	10	junction_1	69.7726466620138	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGTTTTTAATGTCTCT	NA	False	NA	NA	False	NA	NA	NA	156681740	156631597	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_-_156632366_156679742_156679834_156680337_156680457_156681454
transcript_5473.nic	chr1	+	3001	15	NIC	ENSMUSG00000039748.12	novel	7796	15	NA	NA	-20	1	combination_of_known_junctions	FALSE	canonical	3	175	junction_2	73.1663257550206	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGGGAAGTTTAAATGC	9746	False	NA	6	True	AATAAA	-14	NA	175708339	175736299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_175708423_175708697_175708921_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720628_175721306_175721401_175723693_175723920_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175735995
transcript_54730.nnic	chr2	-	1185	4	Fusion	ENSMUSG00000087179.9_ENSMUSG00000082196.4	novel	388	3	NA	NA	-30	134	multi-exon	FALSE	canonical	3	10	junction_1	68.7329776906415	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGTTTTTAATGTCTCT	NA	False	NA	NA	False	NA	NA	NA	156681842	156631597	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_-_156632366_156679742_156679834_156680337_156680457_156681635
transcript_54731.nnic	chr2	-	1102	4	Fusion	ENSMUSG00000087179.9_ENSMUSG00000082196.4	novel	388	3	NA	NA	-30	134	multi-exon	FALSE	canonical	0	0	junction_3	79.3011139055856	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGTTTTTAATGTCTCT	NA	False	NA	NA	False	NA	NA	NA	156681842	156631597	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_-_156632366_156679742_156679834_156680337_156680457_156681718
transcript_54734.nnic	chr2	-	722	4	NNC	ENSMUSG00000087179.9	novel	388	3	NA	NA	-25	30833	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	71.386273190299	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGTCTTAGCTGCATTT	NA	False	NA	NA	False	NA	NA	NA	156681765	156644135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_156644337_156679742_156679834_156680337_156680457_156681454
transcript_54735.nnic	chr2	-	618	4	NNC	ENSMUSG00000087179.9	novel	388	3	NA	NA	-30	30833	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	70.4335778509717	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGTCTTAGCTGCATTT	NA	False	NA	NA	False	NA	NA	NA	156681842	156644135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_156644337_156679742_156679834_156680337_156680457_156681635
transcript_54736.nnic	chr2	-	535	4	NNC	ENSMUSG00000087179.9	novel	388	3	NA	NA	-30	30833	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	80.4003869531871	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGTCTTAGCTGCATTT	NA	False	NA	NA	False	NA	NA	NA	156681842	156644135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_156644337_156679742_156679834_156680337_156680457_156681718
transcript_54738.nnic	chr2	-	480	4	NNC	ENSMUSG00000087179.9	novel	388	3	NA	NA	6	21985	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	71.1243043316887	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTATGAGTGTTTTGCTT	NA	False	NA	NA	False	AATAAA	-19	NA	156681734	156652983	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_156653155_156679742_156679834_156680337_156680457_156681635
transcript_54744.known	chr2	-	874	4	FSM	ENSMUSG00000087179.9	ENSMUST00000137463.8	874	4	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_3	57.393379409127	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGGAGGGGGACACTGT	NA	False	NA	NA	False	NA	NA	NA	156681740	156674968	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_156675347_156679742_156679834_156680337_156680457_156681454
transcript_54745.nic	chr2	-	3138	4	NIC	ENSMUSG00000087179.9	novel	874	4	NA	NA	-30	2343	combination_of_known_junctions	FALSE	canonical	3	55	junction_3	55.3915356550279	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTCTTTCGTGTTTCCT	NA	False	NA	1	True	NA	NA	NA	156681842	156672625	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_156675347_156679742_156679834_156680337_156680457_156681635
transcript_54747.known	chr2	-	388	3	FSM	ENSMUSG00000087179.9	ENSMUST00000149275.3	388	3	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_2	59	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTTATTATTATTTATAT	NA	False	NA	NA	False	NA	NA	NA	156681812	156679741	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_156679834_156680337_156680457_156681635
transcript_54748.nnic	chr2	+	2718	4	NNC	ENSMUSG00000062175.14	novel	2900	3	NA	NA	251	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_1	82.8908251188809	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAATTTTTTGTTGTTTCT	NA	False	NA	NA	False	AATAAA	-35	NA	156682270	156697490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_156682438_156686075_156686302_156695048_156695149_156695265
transcript_54753.nnic	chr2	+	2835	3	NNC	ENSMUSG00000062175.14	novel	2900	3	NA	NA	251	0	intron_retention	FALSE	canonical	3	30	junction_1	93.5	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAATTTTTTGTTGTTTCT	NA	False	NA	NA	False	AATAAA	-35	NA	156682270	156697490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_156682438_156686075_156686302_156695048
transcript_54755.nic	chr2	+	2805	3	NIC	ENSMUSG00000062175.14	novel	484	4	NA	NA	-68	0	intron_retention	FALSE	canonical	3	38	junction_1	89.5	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAATTTTTTGTTGTTTCT	NA	False	NA	NA	False	AATAAA	-35	NA	156682873	156697490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_156683011_156686075_156686302_156695048
transcript_54757.known	chr2	-	1196	3	FSM	ENSMUSG00000085741.9	ENSMUST00000176134.2	1196	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	9	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAACTTAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	156704865	156694349	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_156694611_156695350_156695939_156704518
transcript_54758.known	chr2	-	1431	3	FSM	ENSMUSG00000085741.9	ENSMUST00000153616.9	1431	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	10	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAACTTAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	156704814	156694349	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_156694611_156695350_156696225_156704518
transcript_54759.known	chr2	-	904	2	FSM	ENSMUSG00000085741.9	ENSMUST00000185402.2	904	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTAGCTTCTCCTGCTC	NA	False	NA	NA	False	NA	NA	NA	156704883	156686270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_156686810_156704518
transcript_54760.known	chr2	+	2900	3	FSM	ENSMUSG00000062175.14	ENSMUST00000081335.13	2900	3	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_2	7.5	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAATTTTTTGTTGTTTCT	NA	False	NA	NA	False	AATAAA	-35	NA	156681926	156697490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_156682159_156686075_156686302_156695048
transcript_54761.known	chr2	+	2690	4	FSM	ENSMUSG00000062175.14	ENSMUST00000073352.10	2690	4	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	80.1373820385967	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAATTTTTTGTTGTTTCT	NA	False	NA	NA	False	AATAAA	-35	NA	156682019	156697490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_156682159_156686075_156686302_156695048_156695149_156695265
transcript_54765.known	chr2	+	1045	4	FSM	ENSMUSG00000027637.4	ENSMUST00000029165.4	1045	4	0	0	0	0	multi-exon	FALSE	canonical	3	1149	junction_1	99.8031395631754	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTTGGCATGCCTGGTA	4642	False	NA	14	True	AATAAA	-18	NA	156705047	156715483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_156705338_156707176_156707281_156714257_156714388_156714962
transcript_54766.known	chr2	+	765	3	FSM	ENSMUSG00000027637.4	ENSMUST00000152551.2	765	3	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	636.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTTGGTTCTCCGTCAG	4653	False	NA	NA	False	NA	NA	NA	156705058	156715318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_156705338_156714257_156714388_156714962
transcript_54767.known	chr2	-	2612	17	FSM	ENSMUSG00000027634.15	ENSMUST00000069600.13	2612	17	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	53.8324948335111	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTGCTGGTGTTATTT	5927	False	NA	0	True	AATAAA	-22	NA	156833963	156769264	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_156770802_156771851_156771891_156773135_156773188_156773349_156773386_156776861_156776910_156779246_156779299_156779405_156779472_156780470_156780575_156782276_156782334_156785906_156785994_156786304_156786366_156787936_156788000_156790161_156790283_156791953_156792060_156800386_156800423_156811956_156812059_156833918
transcript_54769.known	chr2	-	2586	16	FSM	ENSMUSG00000027634.15	ENSMUST00000072298.13	2586	16	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_4	17.2644786258439	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTGCTGGTGTTATTT	5914	False	NA	0	True	AATAAA	-22	NA	156833976	156769264	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_156770802_156773135_156773188_156773349_156773386_156776861_156776910_156779246_156779299_156779405_156779472_156780470_156780575_156782276_156782334_156785906_156785994_156786304_156786366_156787936_156788000_156790161_156790283_156791953_156792060_156800386_156800423_156811956_156812059_156833918
transcript_54780.nnic	chr2	-	1875	11	NNC	ENSMUSG00000027635.16	novel	2636	11	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_9	63.4460400655549	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTTGAAGTGTACACTAT	8108	False	NA	-18	True	AATAAA	-18	NA	156849021	156837196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156841055_156841116_156842753_156842845_156843602_156843676_156844608_156844683_156847087_156847193_156847767_156847794_156848894
transcript_54781.nnic	chr2	-	2119	11	NNC	ENSMUSG00000027635.16	novel	2080	11	NA	NA	148	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_10	61.4528274369862	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTTGAAGTGTACACTAT	8327	False	NA	-18	True	AATAAA	-18	NA	156848802	156837196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156841055_156841116_156842753_156842845_156843602_156843676_156844608_156844683_156847087_156847412_156847767_156847794_156848650
transcript_54782.known	chr2	-	2080	11	FSM	ENSMUSG00000027635.16	ENSMUST00000103129.9	2080	11	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_10	28.450131809888	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACTATGTGACAGTGTGT	8134	False	NA	-6	True	AATAAA	-30	NA	156848995	156837184	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156841055_156841116_156842753_156842845_156843602_156843676_156844608_156844683_156847087_156847412_156847767_156847794_156848894
transcript_54783.known	chr2	-	2636	11	FSM	ENSMUSG00000027635.16	ENSMUST00000103130.8	2636	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_10	60.8885046622103	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTTGAAGTGTACACTAT	8055	False	NA	-18	True	AATAAA	-18	NA	156849074	156837196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156841055_156841116_156842753_156842845_156843602_156843676_156844608_156844683_156847087_156847412_156847767_156848283_156848894
transcript_54788.nnic	chr2	-	869	4	NNC	ENSMUSG00000027635.16	novel	2636	11	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	74.0675367485648	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTTGAAGTGTACACTAT	8108	False	NA	-18	True	AATAAA	-18	NA	156849021	156837196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_156837589_156847087_156847412_156847767_156847794_156848894
transcript_54790.known	chr2	-	674	2	FSM	ENSMUSG00000055485.7	ENSMUST00000133571.2	674	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAGAAAGAAAG	5076	False	NA	NA	False	TTTAAA	-18	NA	156882159	156878969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_156879231_156881746
transcript_54791.known	chr2	-	3926	16	FSM	ENSMUSG00000027639.17	ENSMUST00000057725.10	3926	16	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	26.3435423248701	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCTCTCGAGTTACTG	NA	False	NA	-5	True	ATTAAA	-18	NA	156977185	156939452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_156941424_156943640_156943779_156946751_156946857_156948150_156948244_156949348_156949486_156951336_156951453_156952467_156952560_156954719_156954862_156956141_156956243_156958271_156958428_156962401_156962473_156963750_156963867_156965208_156965370_156968691_156968765_156971769_156971837_156976798
transcript_54792.known	chr2	-	2036	17	FSM	ENSMUSG00000027639.17	ENSMUST00000139263.8	2036	17	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	54.3495630157226	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGAATATCTGCGGTTAG	NA	False	NA	-5	True	AGTAAA	-18	NA	156977040	156941320	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_156941424_156943240_156943364_156943640_156943779_156946751_156946857_156948150_156948244_156949348_156949486_156951336_156951453_156952467_156952560_156954719_156954862_156956141_156956243_156958271_156958428_156962401_156962473_156963750_156963867_156965208_156965370_156968691_156968765_156971769_156971837_156976798
transcript_54793.known	chr2	-	1996	16	FSM	ENSMUSG00000027639.17	ENSMUST00000088523.11	1996	16	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	41.6778118427539	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGTTCCAGAGGATCTG	NA	False	NA	NA	False	NA	NA	NA	156977142	156943279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_156943364_156943640_156943779_156946751_156946857_156948150_156948244_156949348_156949486_156951336_156951453_156952467_156952560_156954719_156954862_156956141_156956243_156958271_156958428_156962401_156962473_156963750_156963867_156965208_156965370_156968691_156968765_156971769_156971837_156976798
transcript_54794.known	chr2	-	4862	22	FSM	ENSMUSG00000027641.14	ENSMUST00000029170.8	4862	22	0	0	0	0	multi-exon	TRUE	canonical	3	54	junction_1	43.0171615808876	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTGTACTTTTTACTGCT	NA	False	NA	NA	False	NA	NA	NA	157046432	156987812	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_156989597_156992588_156992754_156994815_156994965_157001579_157001659_157003299_157003372_157005458_157005636_157009154_157009367_157011786_157012051_157016694_157016828_157017447_157017613_157019138_157019277_157029854_157029959_157030142_157030256_157033826_157033994_157034995_157035183_157035931_157035982_157037199_157037361_157037460_157037590_157037679_157037745_157038074_157038276_157041335_157041470_157046219
transcript_54795.nic	chr2	-	2342	15	ISM	ENSMUSG00000027641.14	ENSMUST00000154721.8	2715	16	-21	2814	-21	-2814	5prime_fragment	FALSE	canonical	3	55	junction_2	35.4011991034087	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATATAACTCTGTATTTTT	NA	False	NA	NA	False	CATAAA	-34	NA	157046475	157011711	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_157012051_157016694_157016828_157017447_157017613_157019138_157019277_157029854_157029959_157030142_157030256_157033826_157033994_157034995_157035183_157035931_157035982_157037199_157037361_157037460_157037590_157037679_157037745_157038074_157038276_157041335_157041470_157046219
transcript_54796.known	chr2	-	2383	13	FSM	ENSMUSG00000027641.14	ENSMUST00000124518.2	2383	13	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_1	21.3559450478992	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGGACTTGTATACATGT	NA	False	NA	-6	True	NA	NA	NA	157046446	157016905	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_157017613_157019138_157019277_157029854_157029959_157030142_157030256_157033826_157033994_157034995_157035183_157035931_157035982_157037199_157037361_157037460_157037590_157037679_157037745_157038074_157038276_157041335_157041470_157046219
transcript_54797.nnic	chr2	+	390	2	Genic_Genomic	ENSMUSG00000084113.2	novel	360	1	NA	NA	-50	103	multi-exon	FALSE	canonical	3	12	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGTCTATTGATTGTCA	NA	False	NA	NA	False	AATAAA	-17	NA	157010689	157011202	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr2_+_157010831_157010953
transcript_54805.known	chr2	+	2756	17	FSM	ENSMUSG00000027642.16	ENSMUST00000116380.9	2756	17	0	0	0	0	multi-exon	TRUE	canonical	3	1870	junction_1	194.730412606121	866	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATTTCTTCTGTGATAAA	NA	False	NA	20	True	AATAAA	-17	NA	157120978	157168239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_157121256_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
transcript_54809.known	chr2	+	2314	17	FSM	ENSMUSG00000027642.16	ENSMUST00000127252.8	2314	17	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	580.610235953303	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTTGATGGAGCCTTGCA	NA	False	NA	17	True	AATAAA	-18	NA	157121345	157167976	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_157121444_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
transcript_54821.known	chr2	+	1107	3	FSM	ENSMUSG00000063019.6	ENSMUST00000081202.6	1107	3	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	136	3475	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTGTGTTGCTACTG	5217	False	NA	30	True	AATAAA	-17	NA	157209513	157238683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_157209561_157220968_157221175_157237829
transcript_54822.known	chr2	-	332	1	FSM	ENSMUSG00000081740.4	ENSMUST00000117142.2	332	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	844	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACTAATGGAGAGTAAATAA	NA	False	NA	NA	False	NA	NA	NA	157363948	157363616	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_157363600_157363900
transcript_54823.known	chr2	+	1213	3	FSM	ENSMUSG00000067786.17	ENSMUST00000109526.2	1213	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTTTTGTGGCTTCTTTT	9293	False	NA	12	True	NA	NA	NA	157402029	157404442	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_157402181_157403132_157403214_157403461
transcript_54824.known	chr2	+	1146	2	FSM	ENSMUSG00000067786.17	ENSMUST00000153739.9	1146	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGGGGTGCACCAAAAAGT	9261	False	NA	-6	True	NA	NA	NA	157401997	157404424	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_157402181_157403461
transcript_54826.known	chr2	-	2056	2	FSM	ENSMUSG00000067787.11	ENSMUST00000109528.9	2056	2	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_1	0	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGGTTTTATGTGGCT	NA	False	NA	-12	True	AATAAA	-16	NA	157408257	157398281	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_157400248_157408167
transcript_54827.known	chr2	+	1135	3	FSM	ENSMUSG00000067786.17	ENSMUST00000173839.2	1135	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGGGGTGCACCAAAAAGT	9299	False	NA	-6	True	NA	NA	NA	157402035	157404424	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_157402181_157403132_157403160_157403461
transcript_54828.known	chr2	-	2108	2	FSM	ENSMUSG00000067787.11	ENSMUST00000088494.3	2108	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGGTTTTATGTGGCT	NA	False	NA	-12	True	AATAAA	-16	NA	157408281	157398281	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_157400248_157408139
transcript_54829.known	chr2	-	629	2	FSM	ENSMUSG00000087547.2	ENSMUST00000131365.2	629	2	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	0	2051	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTACATCTGGCCAAATATG	8707	False	NA	-13	True	NA	NA	NA	157439240	157437502	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_157437906_157439014
transcript_54840.known	chr2	+	2442	16	FSM	ENSMUSG00000027649.16	ENSMUST00000029178.7	2442	16	0	0	0	0	multi-exon	FALSE	canonical	3	501	junction_9	43.3601968015214	1219	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGCTTCTCTAGTCTTGC	NA	False	NA	NA	False	GGGGCT	-25	NA	157579320	157733534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_157579480_157616330_157616520_157621731_157621839_157630911_157631052_157641346_157641445_157648594_157648689_157651384_157651477_157659674_157659748_157659970_157660030_157661373_157661523_157678429_157678612_157710219_157710318_157713027_157713109_157726052_157726191_157726347_157726421_157732824
transcript_54841.known	chr2	-	3830	8	FSM	ENSMUSG00000027650.13	ENSMUST00000029179.11	3830	8	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_3	12.5746749055231	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATGAGAGATTTATTTCT	NA	False	NA	-8	True	NA	NA	NA	157870353	157823722	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_157824381_157834887_157834976_157835273_157835479_157837300_157837442_157838996_157839146_157842539_157842729_157848938_157851279_157870293
transcript_54845.known	chr2	+	4283	7	FSM	ENSMUSG00000027651.17	ENSMUST00000029180.14	4283	7	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_3	20.3749573960018	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTGTGTCCCAGCTTTT	NA	False	NA	NA	False	AATAAA	-36	NA	157870640	157920127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_157870966_157877915_157878046_157885325_157885460_157889835_157889949_157892006_157892134_157900571_157900748_157916849
transcript_54846.known	chr2	+	4504	7	FSM	ENSMUSG00000027651.17	ENSMUST00000103123.10	4504	7	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_3	28.7807806241133	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTGTGTCCCAGCTTTT	NA	False	NA	NA	False	AATAAA	-36	NA	157870416	157920127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_157870966_157877915_157878046_157885325_157885460_157889838_157889949_157892006_157892134_157900571_157900748_157916849
transcript_54847.known	chr2	+	4179	6	FSM	ENSMUSG00000027651.17	ENSMUST00000156552.8	4179	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	66.332495807108	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTGTGTCCCAGCTTTT	NA	False	NA	NA	False	AATAAA	-36	NA	157870611	157920127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_157870966_157885325_157885460_157889838_157889949_157892006_157892134_157900571_157900748_157916849
transcript_54848.known	chr2	-	3596	13	FSM	ENSMUSG00000037820.16	ENSMUST00000103122.10	3596	13	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_8	19.1534374634598	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTCTGCCTTGTCCTTT	8806	False	NA	NA	False	AATAAA	-22	NA	157988356	157958321	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_157959872_157960766_157960904_157962044_157962206_157966040_157966311_157969031_157969275_157970558_157970663_157971242_157971379_157973250_157973429_157974348_157974478_157976170_157976290_157980626_157980870_157984914_157985095_157988210
transcript_5485.known	chr1	-	2708	7	FSM	ENSMUSG00000057335.12	ENSMUST00000192961.6	2708	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	24.9532896962839	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAATATTGTTTCATTCAC	NA	False	NA	NA	False	TATAAA	-20	NA	176641633	176605958	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_176607962_176609816_176609977_176610062_176610122_176616032_176616112_176620101_176620192_176621070_176621216_176641461
transcript_54857.known	chr2	+	2525	15	FSM	ENSMUSG00000016024.10	ENSMUST00000016168.9	2525	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	1.75691055374984	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGTTAGGCCCCCAGGCT	NA	False	NA	NA	False	AATAAA	-18	NA	158148412	158174772	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_158148714_158150600_158150716_158151520_158151650_158155392_158155549_158156072_158156137_158159456_158159521_158161591_158161684_158162183_158162361_158163974_158164035_158166428_158166597_158167626_158167695_158168147_158168191_158169436_158169501_158170265_158170343_158173825
transcript_54858.known	chr2	-	1046	7	FSM	ENSMUSG00000085385.8	ENSMUST00000152125.8	1046	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	38.7857362097632	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGTCAACCCATGAATT	8350	False	NA	3	True	AATAAA	-32	NA	158203439	158197684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_158197962_158199117_158199184_158200124_158200261_158201101_158201353_158202446_158202520_158202862_158202991_158203324
transcript_54862.known	chr2	-	933	6	FSM	ENSMUSG00000085385.8	ENSMUST00000133449.8	933	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	32.8048776861003	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGTCAACCCATGAATT	8289	False	NA	3	True	AATAAA	-32	NA	158203500	158197684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_158197962_158199117_158199184_158201101_158201252_158202383_158202520_158202862_158202991_158203324
transcript_54864.nic	chr2	-	1030	6	NIC	ENSMUSG00000085385.8	novel	933	6	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_3	23.4059821413245	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCAGTCTGCCTTTTAAA	8273	False	NA	-17	True	AATAAA	-12	NA	158203516	158197704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_158197962_158199117_158199184_158201101_158201353_158202383_158202520_158202862_158202991_158203324
transcript_54865.known	chr2	-	1553	6	FSM	ENSMUSG00000085385.8	ENSMUST00000141809.8	1553	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	43.611924974713	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAGAAACTGGTAAAGAG	8359	False	NA	NA	False	AAGAAA	-33	NA	158203430	158197226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_158197962_158199117_158199184_158201101_158201353_158202378_158202520_158202862_158203117_158203324
transcript_54866.nic	chr2	-	967	6	NIC	ENSMUSG00000085385.8	novel	1046	7	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_3	30.9476978142155	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCAGTCTGCCTTTTAAA	8273	False	NA	-17	True	AATAAA	-12	NA	158203516	158197704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_158197962_158199117_158199184_158201101_158201353_158202446_158202520_158202862_158202991_158203324
transcript_5487.nic	chr1	-	676	4	ISM	ENSMUSG00000057335.12	ENSMUST00000192961.6	2708	7	-113	9997	-113	0	5prime_fragment	FALSE	canonical	3	59	junction_1	8.28653526310404	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACTTTATGCCTACTGTT	NA	False	NA	NA	False	TATAAA	-14	NA	176641746	176615955	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_176616112_176620101_176620192_176621070_176621216_176641461
transcript_54870.known	chr2	-	2007	5	FSM	ENSMUSG00000085385.8	ENSMUST00000154030.8	2007	5	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_4	13.2193040664023	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGTCAACCCATGAATT	8347	False	NA	3	True	AATAAA	-32	NA	158203442	158197684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_158197962_158199117_158199184_158201101_158202520_158202862_158202991_158203324
transcript_54871.known	chr2	-	3896	4	FSM	ENSMUSG00000085385.8	ENSMUST00000149667.8	3896	4	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_3	13.8884444373331	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCAGTCTGCCTTTTAAA	8356	False	NA	-17	True	AATAAA	-12	NA	158203433	158197704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_158197962_158199117_158202520_158202862_158202991_158203324
transcript_54873.known	chr2	+	1329	6	FSM	ENSMUSG00000044349.17	ENSMUST00000149303.8	1329	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	3.86781592116274	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAACAAAAAATAAATAATT	NA	False	NA	NA	False	NA	NA	NA	158217617	158223510	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_158217809_158218000_158218247_158218664_158218745_158218913_158218993_158222690_158222772_158222858
transcript_54874.known	chr2	+	5864	5	FSM	ENSMUSG00000044349.17	ENSMUST00000109488.8	5864	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_4	1.92028643696715	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTCGGTCACATGTT	NA	False	NA	21	True	NA	NA	NA	158217557	158228065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_158217809_158218000_158218247_158218913_158218993_158222690_158222772_158222858
transcript_54876.known	chr2	+	632	3	FSM	ENSMUSG00000044405.5	ENSMUST00000059889.4	632	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGATGTCCATTCATTCGGC	NA	False	NA	NA	False	ATTAAA	-35	NA	158344531	158350118	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_158344790_158347711_158347842_158349874
transcript_54877.known	chr2	+	2797	2	FSM	ENSMUSG00000037771.12	ENSMUST00000045738.5	2797	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGCCTTCTGTTCACGG	NA	False	NA	NA	False	AATAAA	-17	NA	158452686	158457668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_158453552_158455736
transcript_54879.known	chr2	+	2266	4	FSM	ENSMUSG00000027654.3	ENSMUST00000029183.3	2266	4	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_3	16.3571255285137	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGATTCTTTTTGTT	406	False	NA	8	True	AATAAA	-16	NA	158610012	158628557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_158610508_158621764_158621933_158625052_158625178_158627079
transcript_5488.known	chr1	+	2776	18	FSM	ENSMUSG00000026504.18	ENSMUST00000027785.15	2776	18	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_6	3.6941925807312	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGAGTTGTTCCGTTTCCT	NA	False	NA	7	True	AATAAA	-17	NA	176642225	176848003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_176642622_176652317_176652471_176653764_176653851_176656435_176656550_176658622_176658749_176667850_176667992_176672389_176672455_176672746_176672936_176681329_176681469_176695777_176695931_176702129_176702265_176705555_176705673_176747109_176747253_176773673_176773802_176775846_176775956_176783357_176783490_176839454_176839582_176847680
transcript_54882.known	chr2	+	3249	22	FSM	ENSMUSG00000027655.15	ENSMUST00000145692.8	3249	22	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_4	22.9958095364314	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTTTCTCCTGTCTGTGG	NA	False	NA	28	True	AGTAAA	-19	NA	158636781	158700134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_158636849_158643294_158643429_158648317_158648411_158648842_158648921_158657329_158657455_158659282_158659345_158660181_158660252_158662305_158662366_158668224_158668338_158669822_158669920_158671422_158671582_158673581_158673793_158676789_158676915_158678560_158678616_158682470_158682567_158684224_158684320_158684775_158684854_158685997_158686128_158688827_158688910_158691401_158691474_158693630_158693743_158698999
transcript_54883.known	chr2	+	3284	22	FSM	ENSMUSG00000027655.15	ENSMUST00000109478.9	3284	22	0	0	0	0	multi-exon	TRUE	canonical	3	62	junction_9	12.5862106454921	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTTTCTCCTGTCTGTGG	NA	False	NA	28	True	AGTAAA	-19	NA	158636726	158700134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_158636849_158643294_158643429_158648317_158648411_158648842_158648921_158657349_158657455_158659282_158659345_158660181_158660252_158662305_158662366_158668224_158668338_158669822_158669920_158671422_158671582_158673581_158673793_158676789_158676915_158678560_158678616_158682470_158682567_158684224_158684320_158684775_158684854_158685997_158686128_158688827_158688910_158691401_158691474_158693630_158693743_158698999
transcript_54886.known	chr2	+	575	2	FSM	ENSMUSG00000078955.4	ENSMUST00000128681.2	575	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTCTGGCTGTTGTCTAC	NA	False	NA	NA	False	NA	NA	NA	160425276	160427111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_160425531_160426790
transcript_54887.known	chr2	+	3856	21	FSM	ENSMUSG00000070544.7	ENSMUST00000109468.3	3856	21	0	0	0	0	multi-exon	FALSE	canonical	3	359	junction_7	40.333949719808	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTAGCGTCTGCCTGTTTGT	NA	False	NA	23	True	AATAAA	-21	NA	160487807	160564684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_160488183_160488527_160488553_160512019_160512123_160524570_160524695_160526367_160526424_160529567_160529664_160532196_160532273_160535615_160535723_160540043_160540160_160544621_160544744_160545491_160545615_160546702_160546891_160547096_160547242_160554564_160554709_160556000_160556187_160556965_160557035_160557632_160557748_160559306_160559435_160562498_160562594_160562846_160562997_160563371
transcript_54892.nic	chr2	+	1360	11	ISM	ENSMUSG00000070544.7	ENSMUST00000109468.3	3856	21	-52	19085	-52	0	5prime_fragment	FALSE	canonical	3	359	junction_7	35.6084259691439	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGAAGAAAAATTGGTATG	NA	False	NA	NA	False	NA	NA	NA	160487755	160545599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_160488183_160488527_160488553_160512019_160512123_160524570_160524695_160526367_160526424_160529567_160529664_160532196_160532273_160535615_160535723_160540043_160540160_160544621_160544744_160545491
transcript_54899.nic	chr2	+	873	7	ISM	ENSMUSG00000070544.7	ENSMUST00000109468.3	3856	21	-52	32446	-52	-3398	5prime_fragment	FALSE	canonical	3	362	junction_4	35.1314990033477	335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGGAGAAGAAAAGAAAAT	NA	False	NA	NA	False	TATAAA	-30	NA	160487755	160532238	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_160488183_160488527_160488553_160512019_160512123_160524570_160524695_160526367_160526424_160529567_160529664_160532196
transcript_5490.known	chr1	+	394	2	FSM	ENSMUSG00000063659.12	ENSMUST00000195002.2	394	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATGTATTTCCACCTCTT	NA	False	NA	NA	False	NA	NA	NA	177269916	177274803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_177270162_177274654
transcript_54902.nic	chr2	+	708	5	ISM	ENSMUSG00000070544.7	ENSMUST00000109468.3	3856	21	-52	38288	-52	-475	5prime_fragment	FALSE	canonical	3	362	junction_4	42.2670084108161	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGGAAAAGGAAAATGGCT	NA	False	NA	NA	False	AATAAA	-1	NA	160487755	160526396	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_160488183_160488527_160488553_160512019_160512123_160524570_160524695_160526367
transcript_54904.nic	chr2	+	534	4	ISM	ENSMUSG00000070544.7	ENSMUST00000109468.3	3856	21	0	40083	0	-2270	5prime_fragment	FALSE	canonical	3	398	junction_3	29.7806797922561	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAGAAAGAGAAAACCAAACA	NA	False	NA	-54	True	CATAAA	-22	NA	160487807	160524601	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_160488183_160488527_160488553_160512019_160512123_160524570
transcript_54905.nic	chr2	+	679	4	ISM	ENSMUSG00000070544.7	ENSMUST00000109468.3	3856	21	-52	39990	-52	-2177	5prime_fragment	FALSE	canonical	3	398	junction_3	29.7806797922561	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACAGAACTTTGCCTTAAG	NA	False	NA	39	True	NA	NA	NA	160487755	160524694	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_160488183_160488527_160488553_160512019_160512123_160524570
transcript_54906.nic	chr2	+	503	3	ISM	ENSMUSG00000070544.7	ENSMUST00000109468.3	3856	21	0	52562	0	-14749	5prime_fragment	FALSE	canonical	3	453	junction_1	7	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGAATTGACCAACAGCG	NA	False	NA	58	True	NA	NA	NA	160487807	160512122	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_160488183_160488527_160488553_160512019
transcript_54909.known	chr2	+	3783	2	FSM	ENSMUSG00000070544.7	ENSMUST00000133262.2	3783	2	0	0	0	0	multi-exon	FALSE	canonical	3	453	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	AGTAAA	-32	NA	160487899	160492027	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_160488183_160488527
transcript_5491.known	chr1	-	2771	13	FSM	ENSMUSG00000015961.9	ENSMUST00000016105.9	2771	13	0	0	0	0	multi-exon	FALSE	canonical	3	944	junction_9	76.3848079718008	653	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCCTAAAAGACCAATGGC	NA	False	NA	NA	False	AATAAA	-16	NA	177624077	177590527	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637_177599793_177601140_177601268_177603146_177603229_177604022_177604131_177604378_177604446_177610408_177610460_177611614_177611684_177612461_177612565_177623777
transcript_54911.known	chr2	-	675	5	FSM	ENSMUSG00000057133.15	ENSMUST00000130265.2	675	5	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_4	14.2653426176871	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTAAAGGGTCTTCTATAT	NA	False	NA	NA	False	AATAAA	-17	NA	160894498	160871758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_160871882_160872666_160872730_160881113_160881264_160883904_160884053_160894307
transcript_54919.nnic	chr2	+	873	6	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	-32	2657	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	23.8830483816451	48	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGAGTGCCTGTGTTTG	NA	False	NA	11	True	ATTAAA	-22	NA	162232700	162238522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_162232759_162232933_162233118_162233218_162233320_162236359_162236484_162238066_162238330_162238379
transcript_54927.nnic	chr2	+	914	5	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	-58	2657	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	28.2621655221252	269	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGAGTGCCTGTGTTTG	NA	False	NA	11	True	ATTAAA	-22	NA	162232674	162238522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_162232958_162233218_162233320_162236359_162236484_162238066_162238330_162238379
transcript_54932.nnic	chr2	+	1057	5	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	-41	2657	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	21.2176223927187	48	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGAGTGCCTGTGTTTG	NA	False	NA	11	True	ATTAAA	-22	NA	162232691	162238522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_162233118_162233218_162233320_162236359_162236484_162238066_162238330_162238379
transcript_54937.nnic	chr2	+	749	5	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	-32	2657	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	27.4169199583031	50	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGAGTGCCTGTGTTTG	NA	False	NA	11	True	ATTAAA	-22	NA	162232700	162238522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_162232759_162232933_162233118_162233218_162233320_162238066_162238330_162238379
transcript_54940.nnic	chr2	+	594	4	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	-61	2657	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	26.5497436689865	26	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGAGTGCCTGTGTTTG	NA	False	NA	11	True	ATTAAA	-22	NA	162232671	162238522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_162232759_162233218_162233320_162238066_162238330_162238379
transcript_54946.nnic	chr2	+	790	4	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	-58	2657	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	33.6386021641143	393	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGAGTGCCTGTGTTTG	NA	False	NA	11	True	ATTAAA	-22	NA	162232674	162238522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_162232958_162233218_162233320_162238066_162238330_162238379
transcript_54947.nnic	chr2	+	781	4	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	-58	2657	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	33.6386021641143	42	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGAGTGCCTGTGTTTG	NA	False	NA	11	True	ATTAAA	-22	NA	162232674	162238522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_162232958_162233218_162233320_162238066_162238342_162238400
transcript_54948.nnic	chr2	+	665	4	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	-58	2657	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	36.0832371053374	40	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGAGTGCCTGTGTTTG	NA	False	NA	11	True	ATTAAA	-22	NA	162232674	162238522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_162232958_162233218_162233320_162238191_162238330_162238379
transcript_5495.known	chr1	-	1733	7	FSM	ENSMUSG00000015961.9	ENSMUST00000161808.2	1733	7	0	0	0	0	multi-exon	FALSE	canonical	3	944	junction_3	54.6130326326357	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAAAAAAAACAAAAC	NA	False	NA	NA	False	GGGGCT	-8	NA	177624067	177602183	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_177603229_177604022_177604131_177604378_177604446_177610408_177610460_177611614_177611684_177612461_177612565_177623777
transcript_54953.nnic	chr2	+	933	4	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	-41	2657	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	26.1576417557513	78	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGAGTGCCTGTGTTTG	NA	False	NA	11	True	ATTAAA	-22	NA	162232691	162238522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_162233118_162233218_162233320_162238066_162238330_162238379
transcript_54957.nnic	chr2	+	799	4	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	-32	2657	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	26.1576417557513	53	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGAGTGCCTGTGTTTG	NA	False	NA	11	True	ATTAAA	-22	NA	162232700	162238522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_162232759_162232933_162233118_162233218_162233320_162238066
transcript_5496.known	chr1	+	8802	5	FSM	ENSMUSG00000026502.14	ENSMUST00000027783.14	8802	5	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_4	12.7573508221731	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGATCCATTTTTTCTTA	NA	False	NA	NA	False	AATAAA	-39	NA	178015097	178084867	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_178015524_178065477_178065551_178070177_178070272_178071906_178072049_178076800
transcript_54963.known	chr2	+	3527	6	FSM	ENSMUSG00000016921.15	ENSMUST00000130411.7	3527	6	0	0	0	0	multi-exon	FALSE	canonical	3	865	junction_2	49.2097551304617	330	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGTTCTTCATTTATTG	NA	False	NA	17	True	AATAAA	-18	NA	162773447	162779041	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_162773698_162773913_162774063_162775345_162775471_162775573_162775783_162776147_162776232_162776331
transcript_54970.nic	chr2	+	1710	5	ISM	ENSMUSG00000017868.17	ENSMUST00000018012.14	2693	14	11789	0	1007	0	3prime_fragment	FALSE	canonical	3	12	junction_3	4.54835134966506	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTACTGGGTATGGTTG	NA	False	NA	14	True	ATTAAA	-15	NA	162841038	162856047	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_162841189_162845191_162845288_162846066_162846223_162848713_162848804_162854829
transcript_54972.nic	chr2	+	1302	3	ISM	ENSMUSG00000017868.17	ENSMUST00000018012.14	2693	14	11638	9076	856	-1782	internal_fragment	FALSE	canonical	3	17	junction_1	3.5	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGCTGAGCCCTTGTTT	NA	False	NA	NA	False	AATACA	-22	NA	162840887	162846971	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_162841189_162845191_162845288_162846066
transcript_54976.known	chr2	+	2248	13	FSM	ENSMUSG00000017858.13	ENSMUST00000018002.13	2248	13	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_1	53.5787971122906	1020	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTGTCATTGATATCCT	NA	False	NA	19	True	ATTAAA	-31	NA	162859273	162888061	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_162859454_162864294_162864420_162865269_162865358_162867250_162867381_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
transcript_5499.known	chr1	-	7640	14	FSM	ENSMUSG00000039630.11	ENSMUST00000037748.9	7640	14	0	0	0	0	multi-exon	FALSE	canonical	2	3444	junction_4	860.763298254115	1967	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACATGTATTGTAGTACC	NA	False	NA	NA	False	ATTAAA	-14	NA	178165362	178151907	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_178156973_178157432_178157505_178157729_178157912_178158156_178158412_178158657_178158827_178158913_178159043_178159399_178159520_178159657_178159922_178160561_178160675_178161111_178161212_178161451_178161592_178163446_178163521_178163611_178163724_178164517
transcript_54997.nnic	chr2	+	1621	6	NNC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	9532	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	144.162963343572	422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTGTCATTGATATCCT	NA	False	NA	19	True	ATTAAA	-31	NA	162873894	162888061	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_162874156_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
transcript_55.known	ERCC-00112	+	1120	1	FSM	ERCC-00112A	DQ459422	1120	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	241	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1120	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00112_+_0_1100
transcript_55010.nnic	chr2	+	2711	14	NNC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	-119	975	at_least_one_novel_splicesite	FALSE	canonical	3	97	junction_1	809.068256568618	3908	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCCGACTCTGCCCTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	162896487	162925594	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_162896724_162901420_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
transcript_55011.known	chr2	+	3651	14	FSM	ENSMUSG00000017861.12	ENSMUST00000018005.10	3651	14	0	0	0	0	multi-exon	FALSE	canonical	3	2736	junction_8	179.963737307165	1817	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGACTCCTCCTTTTT	NA	False	NA	26	True	NA	NA	NA	162896606	162926608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_162896769_162901420_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
transcript_55016.nic	chr2	+	2438	11	ISM	ENSMUSG00000017861.12	ENSMUST00000018005.10	3651	14	7641	1014	2979	975	3prime_fragment	FALSE	canonical	3	2736	junction_5	164.584932481683	3941	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCCGACTCTGCCCTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	162904247	162925594	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
transcript_55020.nnic	chr2	+	1954	9	NNC	ENSMUSG00000017861.12	novel	789	7	NA	NA	1281	975	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	1027.57554466813	3887	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCCGACTCTGCCCTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	162911412	162925594	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_162911532_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
transcript_55027.known	chr2	-	822	1	FSM	ENSMUSG00000070708.6	ENSMUST00000094653.6	822	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	968	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCGGGCTGTGCTGGTTGT	2669	False	NA	-3	True	AATAAA	-17	NA	162929775	162928953	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_162929000_162929800
transcript_55028.nnic	chr2	+	1348	3	NNC	ENSMUSG00000086152.2	novel	714	3	NA	NA	-9	306	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_2	1.5	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGGGGTCTAGTCAGCTT	NA	False	NA	NA	False	AATAAA	-13	NA	162964516	162986185	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_162964699_162982755_162983125_162985388
transcript_55030.nnic	chr2	+	978	2	NNC	ENSMUSG00000086152.2	novel	714	3	NA	NA	-5	309	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	0	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGTCTAGTCAGCTTGGA	NA	False	NA	NA	False	AATAAA	-16	NA	162964520	162986188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_162964699_162985388
transcript_55032.known	chr2	+	567	1	FSM	ENSMUSG00000099632.2	ENSMUST00000190930.2	567	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACCAGTCTCTGGCTTTT	NA	False	NA	NA	False	ATTAAA	-24	NA	163261714	163262281	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_163261700_163262300
transcript_55033.known	chr2	-	1620	4	FSM	ENSMUSG00000035399.13	ENSMUST00000046908.10	1620	4	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_1	31.0268700752536	2474	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTATTGTGTGTTGTTTCTT	NA	False	NA	-4	True	NA	NA	NA	163261448	163247741	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_163249010_163253316_163253431_163257454_163257576_163261331
transcript_55034.known	chr2	+	2220	6	FSM	ENSMUSG00000017943.16	ENSMUST00000018087.13	2220	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.49666295470958	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGTGTGGTCCTACTCAACT	NA	False	NA	NA	False	AATAAA	-36	NA	163280397	163296895	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_163280646_163287953_163288147_163289418_163289593_163292485_163292584_163293420_163293536_163295503
transcript_55036.known	chr2	+	1206	6	FSM	ENSMUSG00000017943.16	ENSMUST00000109421.10	1206	6	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	1.49666295470958	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCAGTGTCTCTGTGCTG	NA	False	NA	NA	False	AATACA	-31	NA	163280397	163295872	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_163280646_163287944_163288147_163289418_163289593_163292485_163292584_163293420_163293536_163295503
transcript_55038.nnic	chr2	+	776	4	NNC	ENSMUSG00000053353.6	novel	740	2	NA	NA	116	6432	at_least_one_novel_splicesite	TRUE	canonical	1	3	junction_3	0.816496580927726	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTAAAGACAAGGTCTC	85	False	NA	NA	False	NA	NA	NA	163314580	163321357	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_163314671_163314941_163315081_163315600_163315958_163321167
transcript_55040.nnic	chr2	+	560	4	NNC	ENSMUSG00000053353.6	novel	740	2	NA	NA	116	6432	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	1.24721912892465	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTAAAGACAAGGTCTC	85	False	NA	NA	False	NA	NA	NA	163314580	163321357	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_163314671_163314941_163315081_163315816_163315958_163321167
transcript_55041.nnic	chr2	+	409	3	NNC	ENSMUSG00000053353.6	novel	740	2	NA	NA	116	6422	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTTTTTTTTTTTTAAAG	85	False	NA	NA	False	NA	NA	NA	163314580	163321347	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_163314671_163314941_163315081_163321167
transcript_55042.known	chr2	-	3967	2	FSM	ENSMUSG00000048486.7	ENSMUST00000109418.2	3967	2	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCCGGAGTTTGCTGTGT	NA	False	NA	-8	True	ATTAAA	-25	NA	163314549	163308298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_163312039_163314322
transcript_55043.known	chr2	+	1094	5	FSM	ENSMUSG00000078949.3	ENSMUST00000109416.3	1094	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.433012701892219	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTGACATCTTTGTTCT	NA	False	NA	NA	False	ATTAAA	-19	NA	163334237	163344532	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_163334673_163337608_163337728_163340214_163340348_163341734_163341851_163344241
transcript_55044.known	chr2	+	1999	5	FSM	ENSMUSG00000017679.17	ENSMUST00000109408.10	1999	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	3.8405728739343	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACCATCTGGCCCTCCCT	5699	False	NA	NA	False	AATACA	-18	NA	163444241	163458420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_163444335_163449131_163449595_163453678_163453873_163455654_163455766_163457282
transcript_55045.known	chr2	+	4522	5	FSM	ENSMUSG00000017679.17	ENSMUST00000171696.8	4522	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	8.69985632065266	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCATTGTGGTTTTTATT	5691	False	NA	NA	False	AATAAA	-17	NA	163444233	163460932	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_163444335_163449128_163449595_163453678_163453873_163455654_163455766_163457282
transcript_55055.known	chr2	-	3683	10	FSM	ENSMUSG00000017707.10	ENSMUST00000017851.4	3683	10	0	0	0	0	multi-exon	FALSE	canonical	3	366	junction_6	56.7393868903371	1062	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGATACCTTAGATTAAT	NA	False	NA	NA	False	AATAAA	-20	NA	163487051	163465191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_163467500_163468172_163468398_163469791_163469973_163471046_163471138_163472845_163473016_163474025_163474164_163476354_163476435_163478730_163478925_163481085_163481248_163486917
transcript_55058.known	chr2	+	640	5	FSM	ENSMUSG00000035268.15	ENSMUST00000099105.9	640	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	187.314408148439	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCCCACGGTGCCCAGGT	8619	False	NA	NA	False	NA	NA	NA	163500334	163567608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_163500413_163501069_163501156_163545405_163545476_163563047_163563222_163567376
transcript_55060.known	chr2	+	1036	4	FSM	ENSMUSG00000035268.15	ENSMUST00000064703.13	1036	4	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_1	29.6348143611905	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTATGATCTTTTCTTT	8603	False	NA	10	True	AATAAA	-20	NA	163500318	163568074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_163500413_163545405_163545476_163563047_163563222_163567376
transcript_55062.known	chr2	+	762	4	FSM	ENSMUSG00000035268.15	ENSMUST00000126182.8	762	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	178.258239641258	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGCCACCTGGACAGGGACT	8681	False	NA	NA	False	GGGGCT	-30	NA	163500396	163567711	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_163500580_163545405_163545476_163563047_163563222_163567376
transcript_55063.known	chr2	+	983	3	FSM	ENSMUSG00000035268.15	ENSMUST00000164399.8	983	3	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	157.5	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGATCTTTTCTTTTAAC	8590	False	NA	14	True	AATAAA	-24	NA	163500305	163568078	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_163500413_163563047_163563222_163567376
transcript_55064.known	chr2	-	1688	12	FSM	ENSMUSG00000017697.4	ENSMUST00000017841.4	1688	12	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	12.1526108476007	321	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATGGGTGTTTTGCCTGCT	NA	False	NA	NA	False	TTTAAA	-20	NA	163592159	163568503	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_163568969_163569463_163569564_163570036_163570167_163571931_163571997_163572217_163572320_163572400_163572473_163573024_163573153_163574176_163574293_163574773_163574918_163577268_163577392_163580082_163580145_163591978
transcript_55066.known	chr2	+	3013	6	FSM	ENSMUSG00000018326.10	ENSMUST00000018470.10	3013	6	0	0	0	0	multi-exon	FALSE	canonical	3	1292	junction_3	139.446620611616	621	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTGTGGATTGATGTG	NA	False	NA	21	True	AATAAA	-16	NA	163836879	163860508	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_163837286_163853521_163853825_163855925_163856050_163857150_163857315_163858022_163858119_163858588
transcript_55073.nnic	chr2	+	666	2	NNC	ENSMUSG00000054582.5	novel	750	2	NA	NA	-75	-2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCTTGCCTGGAAGGAG	NA	False	NA	NA	False	ATTAAA	-15	NA	163889231	163892456	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_163889338_163891896
transcript_55074.known	chr2	+	750	2	FSM	ENSMUSG00000054582.5	ENSMUST00000126272.2	750	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTGCCTGGAAGGAGGG	NA	False	NA	NA	False	ATTAAA	-17	NA	163889306	163892458	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_163889495_163891896
transcript_55075.known	chr2	+	5232	11	FSM	ENSMUSG00000018209.16	ENSMUST00000018353.14	5232	11	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_9	12.953763931769	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTCCCCTTTCTTCACA	NA	False	NA	18	True	AATAAA	-18	NA	163916057	163997444	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_163916168_163921432_163921514_163925549_163925679_163928414_163928530_163930760_163930926_163938658_163938827_163940358_163940497_163941616_163941746_163942329_163942517_163959888_163960047_163993592
transcript_55078.nic	chr2	+	1319	10	ISM	ENSMUSG00000018209.16	ENSMUST00000018353.14	5232	11	-33	37492	-33	-337	5prime_fragment	FALSE	canonical	3	214	junction_9	13.5819415328763	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAATCAGATCAACAGCT	NA	False	NA	NA	False	AAAAAG	-5	NA	163916024	163959952	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_163916168_163921432_163921514_163925549_163925679_163928414_163928530_163930760_163930926_163938658_163938827_163940358_163940497_163941616_163941746_163942329_163942517_163959888
transcript_55079.nic	chr2	+	1656	10	ISM	ENSMUSG00000018209.16	ENSMUST00000018353.14	5232	11	-33	37155	-33	0	5prime_fragment	FALSE	canonical	3	214	junction_9	13.5819415328763	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTTTCCTGTTTTGT	NA	False	NA	NA	False	TATAAA	-16	NA	163916024	163960289	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_163916168_163921432_163921514_163925549_163925679_163928414_163928530_163930760_163930926_163938658_163938827_163940358_163940497_163941616_163941746_163942329_163942517_163959888
transcript_55080.known	chr2	-	1923	7	FSM	ENSMUSG00000018322.11	ENSMUST00000109384.10	1923	7	0	0	0	0	multi-exon	FALSE	canonical	3	532	junction_3	35.0606617165164	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGGCTCTGACGCATTT	5881	False	NA	-5	True	ATTAAA	-16	NA	163913089	163895459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_163896428_163896620_163896748_163900585_163900734_163902758_163902929_163906811_163906965_163908489_163908590_163912832
transcript_55081.known	chr2	-	2302	7	FSM	ENSMUSG00000018322.11	ENSMUST00000018466.4	2302	7	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_6	196.655155030322	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGGCTCTGACGCATTT	5948	False	NA	-5	True	ATTAAA	-16	NA	163913022	163895459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_163896428_163896620_163896748_163900585_163900734_163902758_163902929_163906811_163906965_163908489_163908590_163912386
transcript_55085.known	chr2	+	694	3	FSM	ENSMUSG00000018209.16	ENSMUST00000137866.2	694	3	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_2	9	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTTTCCTGTTTTGT	NA	False	NA	NA	False	TATAAA	-16	NA	163941639	163960289	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_163941746_163942329_163942517_163959888
transcript_55087.known	chr2	-	488	3	FSM	ENSMUSG00000051769.3	ENSMUST00000063251.3	488	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	2.5	236	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTATGTAATAACTGTTT	NA	False	NA	NA	False	ATTAAA	-38	NA	164042050	164040782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_164040933_164041577_164041737_164041871
transcript_55088.known	chr2	+	628	3	FSM	ENSMUSG00000017004.8	ENSMUST00000017148.8	628	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCCTGAAATCTCTTGCT	NA	False	NA	NA	False	AATAAA	-22	NA	164174659	164176316	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_164174776_164175219_164175559_164176143
transcript_55089.known	chr2	-	2458	5	FSM	ENSMUSG00000017009.4	ENSMUST00000017153.4	2458	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	6.36396103067893	631	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTCAGTTTTATTTTTG	NA	False	NA	47	True	AATAAA	-24	NA	164285106	164266166	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_164268158_164270812_164271009_164271599_164271647_164273106_164273234_164285009
transcript_55091.known	chr2	+	1658	4	FSM	ENSMUSG00000017734.16	ENSMUST00000069385.15	1658	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.88561808316413	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	164328374	164333195	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_164328608_164330161_164330309_164330487_164330626_164332055
transcript_55092.nic	chr2	+	961	3	ISM	ENSMUSG00000045503.17	ENSMUST00000072452.11	1606	4	270	547	-68	-547	3prime_fragment	FALSE	canonical	3	303	junction_1	8.5	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCCATGACAGCCAGTACC	NA	False	NA	31	True	AATAAA	-25	NA	164303160	164306881	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_164303450_164305220_164305289_164306277
transcript_55093.nic	chr2	+	1345	3	ISM	ENSMUSG00000045503.17	ENSMUST00000072452.11	1606	4	270	163	-68	-163	3prime_fragment	FALSE	canonical	3	303	junction_1	8.5	80	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAACTGTGGCAGGAGTT	NA	False	NA	11	True	NA	NA	NA	164303160	164307265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_164303450_164305220_164305289_164306277
transcript_55094.nic	chr2	+	1512	3	ISM	ENSMUSG00000045503.17	ENSMUST00000072452.11	1606	4	270	-4	-68	0	3prime_fragment	FALSE	canonical	3	303	junction_1	8.5	110	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGGCTTGTACTTAAGTC	NA	False	NA	NA	False	CATAAA	-18	NA	164303160	164307432	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_164303450_164305220_164305289_164306277
transcript_55096.nnic	chr2	+	2493	13	NNC	ENSMUSG00000017721.16	novel	2611	13	NA	NA	4	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_12	51.0299476342623	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCGTTGCTTCCTTCCTAA	5116	False	NA	7	True	AATAAA	-16	NA	164339443	164350221	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397_164344599_164348302_164348469_164348569_164348654_164349194_164349447_164349511
transcript_55097.known	chr2	+	2562	12	FSM	ENSMUSG00000017721.16	ENSMUST00000103101.11	2562	12	0	0	0	0	multi-exon	TRUE	canonical	3	37	junction_9	44.392501786631	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCGTTGCTTCCTTCCTAA	5112	False	NA	7	True	AATAAA	-16	NA	164339439	164350221	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397_164344599_164348302_164348469_164348569_164348654_164349194
transcript_55099.nnic	chr2	+	2334	13	NNC	ENSMUSG00000017721.16	novel	2611	13	NA	NA	4	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	51.0299476342623	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCGTTGCTTCCTTCCTAA	5116	False	NA	7	True	AATAAA	-16	NA	164339443	164350221	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397_164344599_164348302_164348469_164348569_164348654_164349194_164349527_164349750
transcript_55100.nnic	chr2	+	2333	13	NNC	ENSMUSG00000017721.16	novel	2611	13	NA	NA	4	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_12	51.0299476342623	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCGTTGCTTCCTTCCTAA	5116	False	NA	7	True	AATAAA	-16	NA	164339443	164350221	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397_164344599_164348302_164348469_164348569_164348654_164349194_164349543_164349767
transcript_55104.known	chr2	+	1712	9	FSM	ENSMUSG00000017721.16	ENSMUST00000117066.8	1712	9	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_7	35.1212186576719	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATCACTGTTAATCATAAA	5127	False	NA	NA	False	ATTAAA	-24	NA	164339454	164345040	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397
transcript_55117.known	chr2	+	849	5	FSM	ENSMUSG00000017723.12	ENSMUST00000017867.10	849	5	0	0	0	0	multi-exon	FALSE	canonical	3	478	junction_3	30.4251129825347	5082	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	113	False	NA	26	True	AATAAA	-32	NA	164404498	164410430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_164404725_164405227_164405372_164405976_164406133_164407711_164407859_164410254
transcript_55125.known	chr2	+	558	4	FSM	ENSMUSG00000017723.12	ENSMUST00000109345.9	558	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	240.807438054189	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	248	False	NA	26	True	AATAAA	-32	NA	164404633	164410430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_164404725_164405227_164405372_164407711_164407859_164410254
transcript_55127.nnic	chr2	+	798	4	NIC	ENSMUSG00000017723.12	novel	849	5	NA	NA	73	0	combination_of_known_splicesites	FALSE	canonical	3	36	junction_1	229.843908386153	500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	20	False	NA	26	True	AATAAA	-32	NA	164404405	164410430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_164404725_164405976_164406133_164407711_164407859_164410254
transcript_55134.known	chr2	+	429	3	FSM	ENSMUSG00000017723.12	ENSMUST00000109344.9	429	3	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	240.5	1391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	233	False	NA	26	True	AATAAA	-32	NA	164404618	164410430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_164404725_164407711_164407859_164410254
transcript_55136.known	chr2	-	252	3	FSM	ENSMUSG00000074594.10	ENSMUST00000099095.4	252	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAACGCGATCCACTGCT	3776	False	NA	NA	False	NA	NA	NA	164493683	164491706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_164491738_164492404_164492547_164493604
transcript_55137.known	chr2	+	459	2	FSM	ENSMUSG00000070529.8	ENSMUST00000094344.6	459	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACACTCTTAATAATCACTG	-7	True	NA	NA	False	AATAAA	-22	NA	164497965	164499288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_164498119_164498982
transcript_55139.known	chr2	+	443	4	FSM	ENSMUSG00000074593.12	ENSMUST00000103097.10	443	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.65685424949238	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATTTAGAATTCAAAATT	NA	False	NA	NA	False	AATAAA	-16	NA	164557224	164559988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_164557395_164557965_164557975_164558914_164559085_164559894
transcript_55142.nnic	chr2	+	399	3	NNC	ENSMUSG00000074593.12	novel	443	4	NA	NA	1186	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	2	101	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATTTAGAATTCAAAATT	670	False	NA	NA	False	AATAAA	-16	NA	164558410	164559988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_164558546_164558914_164559085_164559894
transcript_55143.nnic	chr2	+	288	3	NNC	ENSMUSG00000074593.12	novel	443	4	NA	NA	1234	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATTTAGAATTCAAAATT	718	False	NA	NA	False	AATAAA	-16	NA	164558458	164559988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_164558483_164558914_164559085_164559894
transcript_55146.known	chr2	-	1619	2	FSM	ENSMUSG00000076434.10	ENSMUST00000130227.2	1619	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCCCCAGCTTTGGACTG	5759	False	NA	NA	False	AATAAA	-35	NA	164587851	164585484	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_164587005_164587752
transcript_55148.known	chr2	+	1664	13	FSM	ENSMUSG00000017299.14	ENSMUST00000017443.14	1664	13	0	0	0	0	multi-exon	FALSE	canonical	3	563	junction_10	65.6144039064594	736	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCCTGTTTTTGTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	164587902	164610527	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_164588079_164588626_164588698_164589382_164589480_164596029_164596129_164599309_164599379_164599602_164599657_164599920_164599980_164601171_164601218_164604988_164605048_164605140_164605202_164607080_164607153_164609626_164609683_164609782
transcript_5516.known	chr1	-	2640	2	FSM	ENSMUSG00000039630.11	ENSMUST00000159117.2	2640	2	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_1	0	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTTGCTTCTCTTGTTTT	NA	False	NA	-1	True	ATTAAA	-22	NA	178151736	178148672	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_178150761_178151184
transcript_55161.known	chr2	-	490	5	FSM	ENSMUSG00000086453.8	ENSMUST00000124435.8	490	5	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_1	2.27760839478607	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGCACGTTCTTAGCCG	2139	False	NA	NA	False	NA	NA	NA	164611539	164596161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_164596225_164601148_164601261_164604463_164604529_164609632_164609834_164611490
transcript_55170.known	chr2	+	560	5	FSM	ENSMUSG00000017299.14	ENSMUST00000135458.2	560	5	0	0	0	0	multi-exon	FALSE	canonical	3	592	junction_3	38.3699100858993	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTTGTGTTGTGTTCAGT	NA	False	NA	13	True	NA	NA	NA	164596058	164601479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_164596129_164599309_164599379_164599602_164599657_164599920_164599980_164601171
transcript_55174.known	chr2	-	700	6	FSM	ENSMUSG00000017300.10	ENSMUST00000103095.5	700	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	1.16619037896906	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGCTTGACCGACTGATT	NA	False	NA	NA	False	AATAAA	-16	NA	164621661	164619080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_164619254_164619391_164619529_164619650_164619766_164619863_164620008_164620095_164620148_164621582
transcript_55178.known	chr2	+	967	6	FSM	ENSMUSG00000001403.14	ENSMUST00000088248.13	967	6	0	0	0	0	multi-exon	FALSE	canonical	3	1606	junction_1	43.6458474542539	11216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTCTCAAGTTACCCT	NA	False	NA	NA	False	AATAAA	-25	NA	164611817	164614827	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_164612001_164612286_164612315_164613212_164613300_164613773_164613979_164614086_164614147_164614423
transcript_55179.known	chr2	+	2191	6	FSM	ENSMUSG00000001403.14	ENSMUST00000001439.7	2191	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	668.177940372174	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTCTGGCTTTGGTGTTTA	NA	False	NA	NA	False	AATAAA	-21	NA	164611822	164620742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_164612001_164612286_164612315_164613212_164613300_164613773_164613979_164614086_164614147_164619109
transcript_5518.known	chr1	+	471	4	FSM	ENSMUSG00000026500.7	ENSMUST00000027781.7	471	4	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_3	43.5150037981793	3077	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTTTTACATGAAATCC	NA	False	NA	20	True	ATTAAA	-23	NA	178146694	178150258	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_178146774_178149309_178149425_178149506_178149571_178150045
transcript_55189.known	chr2	-	1017	5	FSM	ENSMUSG00000017307.17	ENSMUST00000134611.4	1017	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_4	121.847240428333	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGACCTTTAATAGAACTA	8167	False	NA	2	True	AATAAA	-22	NA	164646801	164634684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_164634931_164636904_164637100_164637571_164637730_164641639_164641866_164646609
transcript_55203.known	chr2	+	1825	3	FSM	ENSMUSG00000050373.14	ENSMUST00000172577.8	1825	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	7.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGTGCTTTGCCTGCAAAG	NA	False	NA	NA	False	NA	NA	NA	164627910	164634972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_164628245_164628617_164628769_164633632
transcript_55207.known	chr2	+	1243	2	FSM	ENSMUSG00000050373.14	ENSMUST00000152471.2	1243	2	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	164627936	164629552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_164628245_164628617
transcript_55208.known	chr2	-	1152	6	FSM	ENSMUSG00000017307.17	ENSMUST00000103094.11	1152	6	0	0	0	0	multi-exon	TRUE	canonical	3	284	junction_4	26.9250812440743	3089	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGCTGACCTTTAATAGAA	8166	False	NA	-1	True	AATAAA	-19	NA	164646802	164634687	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_164634931_164636904_164637100_164637571_164637730_164641639_164641866_164644916_164645054_164646609
transcript_55209.known	chr2	-	1055	6	FSM	ENSMUSG00000017307.17	ENSMUST00000017451.7	1055	6	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	116.717779279765	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGCTGACCTTTAATAGAA	8166	False	NA	-1	True	AATAAA	-19	NA	164646802	164634687	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_164634931_164637001_164637100_164637571_164637730_164641639_164641866_164644916_164645054_164646609
transcript_55211.known	chr2	+	2708	2	FSM	ENSMUSG00000045822.5	ENSMUST00000052107.5	2708	2	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	0	176	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTGTGTTTTTTGAGACG	3063	False	NA	22	True	AATAAA	-22	NA	164647017	164664050	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_164647352_164661676
transcript_5522.known	chr1	+	3580	7	FSM	ENSMUSG00000026495.9	ENSMUST00000027775.9	3580	7	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_5	10.1447851956888	230	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGACTCTGCTTTGTGT	NA	False	NA	8	True	NA	NA	NA	178233667	178312078	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_178233699_178264966_178265052_178283380_178283454_178302446_178302527_178303249_178303293_178303389_178303457_178308877
transcript_55230.known	chr2	-	1014	2	FSM	ENSMUSG00000039873.5	ENSMUST00000042775.5	1014	2	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGGAGGGTCTCCTTGC	NA	False	NA	NA	False	AATAAA	-24	NA	164675376	164672651	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_164672908_164674618
transcript_55231.known	chr2	-	1809	16	FSM	ENSMUSG00000017754.14	ENSMUST00000059954.14	1809	16	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_15	32.6696597268271	1591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTTTCTCTAGCTCTG	NA	False	NA	-1	True	NA	NA	NA	164699631	164681437	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806_164698918_164699503
transcript_55232.known	chr2	-	2226	15	FSM	ENSMUSG00000017754.14	ENSMUST00000109316.8	2226	15	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_14	23.0625812315366	756	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTTTCTCTAGCTCTG	NA	False	NA	-1	True	NA	NA	NA	164699462	164681437	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806
transcript_55233.known	chr2	-	538	5	FSM	ENSMUSG00000017754.14	ENSMUST00000128110.2	538	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	150.541314927165	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTCTGTGTCTAAAATGAA	NA	False	NA	NA	False	ATTAAA	-22	NA	164699550	164696229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_164696342_164696846_164696976_164698623_164698724_164698806_164698918_164699464
transcript_55237.nnic	chr2	+	706	2	NNC	ENSMUSG00000039849.7	novel	611	2	NA	NA	-14	-38	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	0	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTATGATGTCGTTAACA	5935	False	NA	6	True	AATAAA	-16	NA	164721262	164725081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_164721582_164724694
transcript_55238.known	chr2	+	383	2	FSM	ENSMUSG00000039849.7	ENSMUST00000122810.2	383	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCAAATTACCAGGCATCT	6644	False	NA	-45	True	GATAAA	-20	NA	164721971	164725030	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_164722019_164724694
transcript_55239.known	chr2	+	1127	2	FSM	ENSMUSG00000085436.2	ENSMUST00000129364.2	1127	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTTTTTTGGATACGGT	7240	False	NA	NA	False	NA	NA	NA	164753273	164761873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_164753671_164761143
transcript_55240.known	chr2	+	611	2	FSM	ENSMUSG00000039849.7	ENSMUST00000145327.2	611	2	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_1	0	1944	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAGCACGCAAAGAAAATCT	5896	False	NA	44	True	NA	NA	NA	164721223	164725119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_164721410_164724694
transcript_55241.known	chr2	+	5780	17	FSM	ENSMUSG00000039849.7	ENSMUST00000041643.5	5780	17	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_4	60.7051017213545	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGTGGCCACAGACATGAA	5949	False	NA	9	True	AATAAA	-16	NA	164721276	164736374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_164721410_164724694_164724865_164725996_164726140_164726224_164726350_164727278_164727417_164727595_164727724_164727827_164727983_164728414_164728563_164728643_164728728_164728978_164729079_164730270_164730434_164731013_164731187_164731305_164731393_164731473_164731659_164732334_164732429_164732518_164732695_164732796
transcript_55242.nic	chr2	+	1449	7	ISM	ENSMUSG00000017737.3	ENSMUST00000017881.3	3175	13	2572	725	95	-725	3prime_fragment	FALSE	canonical	1	2	junction_1	0.816496580927726	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCAGCTACTTTAGTCA	6678	False	NA	NA	False	AATAAA	-16	NA	164792710	164797045	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_164792922_164793026_164793183_164794339_164794674_164794774_164794915_164795183_164795335_164795438_164795543_164796692
transcript_55243.known	chr2	-	3179	8	FSM	ENSMUSG00000039804.16	ENSMUST00000040381.15	3179	8	0	0	0	0	multi-exon	TRUE	canonical	3	73	junction_1	19.1790702249582	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGCTAATCTTTCTTGG	2982	False	NA	-6	True	ATTAAA	-15	NA	164876787	164842276	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_164844092_164844558_164844880_164846016_164846217_164851242_164851370_164852370_164852508_164854755_164855083_164865065_164865133_164876602
transcript_55246.nic	chr2	-	911	3	ISM	ENSMUSG00000039804.16	ENSMUST00000122070.2	3117	8	-42	12104	-1	530	5prime_fragment	FALSE	canonical	3	83	junction_2	7	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGCATCTGGAACTGGGC	3019	False	NA	NA	False	NA	NA	NA	164876750	164854386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_164855083_164865065_164865133_164876602
transcript_55248.known	chr2	+	2986	9	FSM	ENSMUSG00000017652.17	ENSMUST00000017799.12	2986	9	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	6.06217782649107	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAACAGAAGATTCATATAA	NA	False	NA	NA	False	NA	NA	NA	164897546	164914868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_164897679_164904205_164904285_164904580_164904707_164904941_164905089_164905387_164905482_164908422_164908485_164911548_164911636_164911736_164911769_164912641
transcript_55251.known	chr2	+	668	8	FSM	ENSMUSG00000017652.17	ENSMUST00000081310.11	668	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	6.77630927178938	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGATCCCCAGGAGATGGA	NA	False	NA	NA	False	NA	NA	NA	164897599	164912665	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_164897679_164904205_164904285_164904580_164904707_164904941_164905089_164905387_164905482_164911548_164911636_164911736_164911769_164912641
transcript_55259.known	chr2	-	1843	11	FSM	ENSMUSG00000017664.17	ENSMUST00000017808.14	1843	11	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_9	88.3464204141854	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	5702	False	NA	-34	True	AATAAA	-18	NA	165129747	165118473	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125328_165125447_165125521_165129703
transcript_55260.nic	chr2	-	1888	11	NIC	ENSMUSG00000017664.17	novel	2008	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_9	81.3242891146304	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	5660	False	NA	-34	True	AATAAA	-18	NA	165129789	165118473	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125328_165125447_165125524_165129703
transcript_55261.known	chr2	-	1892	10	FSM	ENSMUSG00000017664.17	ENSMUST00000132270.8	1892	10	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_8	86.0462121030551	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	5705	False	NA	-34	True	AATAAA	-18	NA	165129744	165118473	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124783_165125168_165125524_165129703
transcript_55262.known	chr2	-	1991	10	FSM	ENSMUSG00000017664.17	ENSMUST00000109298.8	1991	10	0	0	0	0	multi-exon	TRUE	canonical	2	10	junction_9	78.2020175926143	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	5774	False	NA	-34	True	AATAAA	-18	NA	165129675	165118473	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125521_165129603
transcript_55263.nic	chr2	-	2069	10	NIC	ENSMUSG00000017664.17	novel	1843	11	NA	NA	-64	0	intron_retention	FALSE	canonical	3	63	junction_9	61.9452167365908	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	5596	False	NA	-34	True	AATAAA	-18	NA	165129853	165118473	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125521_165129703
transcript_55264.known	chr2	-	2008	10	FSM	ENSMUSG00000017664.17	ENSMUST00000109300.9	2008	10	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_9	47.7596864973064	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	5660	False	NA	-34	True	AATAAA	-18	NA	165129789	165118473	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125524_165129703
transcript_55281.known	chr2	-	3466	21	FSM	ENSMUSG00000017670.17	ENSMUST00000094329.11	3466	21	0	0	0	0	multi-exon	TRUE	canonical	3	269	junction_20	30.5759300757965	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGCTTCCTATCCACACC	NA	False	NA	-17	True	AATAAA	-15	NA	165168399	165131074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_165132482_165134024_165134103_165136160_165136244_165136933_165137042_165137163_165137277_165137382_165137547_165138760_165138898_165139266_165139376_165139460_165139566_165140128_165140264_165140539_165140663_165143860_165143912_165146819_165146899_165150832_165150985_165152094_165152195_165153542_165153725_165156650_165156702_165157523_165157597_165157917_165157959_165158158_165158272_165168337
transcript_55282.known	chr2	-	3502	22	FSM	ENSMUSG00000017670.17	ENSMUST00000074046.13	3502	22	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_12	97.9880829442692	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGCTTCCTATCCACACC	NA	False	NA	-17	True	AATAAA	-15	NA	165168399	165131074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_165132482_165134024_165134103_165136160_165136244_165136933_165137042_165137163_165137277_165137382_165137547_165138760_165138898_165139266_165139376_165139460_165139566_165140128_165140264_165140539_165140663_165143860_165143912_165145585_165145622_165146819_165146899_165150832_165150985_165152094_165152195_165153542_165153725_165156650_165156702_165157523_165157597_165157917_165157959_165158158_165158272_165168337
transcript_55285.nnic	chr2	-	1148	9	NNC	ENSMUSG00000017670.17	novel	639	6	NA	NA	-1	1224	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	114.629225658206	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTACAAACTTAAAAGCTC	NA	False	NA	NA	False	NA	NA	NA	165168400	165149608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_165149982_165150832_165150985_165152094_165152195_165153542_165153725_165156650_165156702_165157523_165157597_165157917_165157959_165158158_165158272_165168337
transcript_55289.known	chr2	-	8205	5	FSM	ENSMUSG00000017667.10	ENSMUST00000103084.4	8205	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	3.24037034920393	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTGTCTTGGCTTCTTT	4540	False	NA	0	True	AATAAA	-39	NA	165230179	165216183	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_165223807_165224610_165224704_165225158_165225286_165228845_165228909_165229880
transcript_55290.known	chr2	-	1880	2	FSM	ENSMUSG00000039725.7	ENSMUST00000039007.7	1880	2	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_1	0	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTCGGAGACCTGGAACA	NA	False	NA	-17	True	NA	NA	NA	165335244	165332029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_165333632_165334966
transcript_5530.known	chr1	-	6871	12	FSM	ENSMUSG00000055067.16	ENSMUST00000128302.8	6871	12	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_1	34.6080772113168	543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGGTTCTCTGCTGTTC	NA	False	NA	NA	False	AATAAA	-15	NA	179345599	178779524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_178785128_178799752_178799862_178871301_178871477_178877855_178877944_178913888_178914000_178920430_178920534_178921899_178921968_179232847_179232985_179237971_179238030_179239242_179239351_179250919_179250984_179345352
transcript_55305.nnic	chr2	-	2423	12	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	-62	5	at_least_one_novel_splicesite	TRUE	canonical	2	3	junction_1	164.953988074912	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGGTTGTGTTTAATTTA	NA	False	NA	38	True	AATAGA	-18	NA	165740998	165669043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_165669638_165669852_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165740835
transcript_55306.nnic	chr2	-	2498	12	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	-62	5	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	166.859667865936	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGGTTGTGTTTAATTTA	NA	False	NA	38	True	AATAGA	-18	NA	165740998	165669043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_165669638_165669852_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165717624_165717696_165740835
transcript_55308.nnic	chr2	-	2361	12	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	-62	-4	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	164.953988074912	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCCTTTGCTCTCTTGTT	NA	False	NA	-24	True	AATAAA	-18	NA	165740998	165669105	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_165669638_165669852_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165740835
transcript_55310.nnic	chr2	-	2436	12	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	-62	-4	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	166.859667865936	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCCTTTGCTCTCTTGTT	NA	False	NA	-24	True	AATAAA	-18	NA	165740998	165669105	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_165669638_165669852_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165717624_165717696_165740835
transcript_55324.known	chr2	-	629	6	FSM	ENSMUSG00000039671.19	ENSMUST00000136842.2	629	6	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_5	120.234104978579	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATATATTTTCCACCCCA	NA	False	NA	NA	False	NA	NA	NA	165740936	165681960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165740835
transcript_55341.known	chr2	+	847	2	FSM	ENSMUSG00000085274.2	ENSMUST00000155786.2	847	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAGGGCTGCTGGGAGCC	NA	False	NA	NA	False	NA	NA	NA	165699603	165700954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_165699939_165700442
transcript_55347.known	chr2	+	5757	23	FSM	ENSMUSG00000027678.18	ENSMUST00000109252.8	5757	23	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_19	38.1274504699546	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGCCCACTCATCATTTTA	NA	False	NA	16	True	ATTAAA	-22	NA	165834555	165913390	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_165834679_165876804_165876884_165889375_165889481_165889702_165889876_165890374_165890476_165891985_165892161_165893231_165893418_165893533_165893627_165894274_165894416_165894673_165894822_165896201_165896579_165896690_165897560_165899008_165899139_165900561_165900757_165901083_165901396_165901614_165901742_165902676_165902849_165907677_165907972_165909481_165909566_165910251_165910469_165911124_165911300_165911730_165911873_165912051
transcript_55355.nnic	chr2	-	636	3	Intergenic	novelGene_75	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGGAGGGAGGGAGGGAG	4063	False	NA	NA	False	NA	NA	NA	165989673	165984310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr2_-_165984500_165987482_165987663_165989406
transcript_55358.known	chr2	-	3808	22	FSM	ENSMUSG00000006800.15	ENSMUST00000146497.9	3808	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_21	257.404161765755	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATCTTGGGACTTTTTTGC	NA	False	NA	-10	True	NA	NA	NA	165997583	165915833	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_165916739_165917414_165917469_165917691_165917726_165919437_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507_165974775_165983633_165983687_165997422
transcript_55359.known	chr2	-	4580	21	FSM	ENSMUSG00000006800.15	ENSMUST00000109249.9	4580	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_20	203.951336107416	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTGTTCTCAGTGGTGT	NA	False	NA	NA	False	TATAAA	-14	NA	165997583	165915008	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_165916739_165917414_165917469_165917691_165917726_165919437_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507_165974775_165997422
transcript_55361.known	chr2	-	1691	8	FSM	ENSMUSG00000085682.3	ENSMUST00000228378.2	1691	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	13.2741885489341	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAACTCATTCTTGACTTT	NA	False	NA	-6	True	AATAAA	-44	NA	166349991	166341960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_166342691_166344290_166344399_166345246_166345340_166347371_166347507_166347939_166348119_166348706_166348871_166349381_166349480_166349807
transcript_55365.nnic	chr2	-	1229	5	NIC	ENSMUSG00000085682.3	novel	1691	8	NA	NA	26	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	13.1029576813787	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATTCTTGACTTTTTGTT	NA	False	NA	-1	True	AATAAA	-17	NA	166349965	166341955	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_166342691_166344290_166344399_166345246_166345340_166347371_166347507_166349807
transcript_55366.known	chr2	-	1106	5	FSM	ENSMUSG00000085682.3	ENSMUST00000228242.2	1106	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	16.5755844542508	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAACTCATTCTTGACTTT	NA	False	NA	-6	True	AATAAA	-44	NA	166351072	166341960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_166342691_166344290_166344399_166345246_166345340_166347371_166347507_166351032
transcript_55367.known	chr2	-	1095	5	FSM	ENSMUSG00000085682.3	ENSMUST00000228863.2	1095	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	16.5755844542508	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAACTCATTCTTGACTTT	NA	False	NA	-6	True	AATAAA	-44	NA	166351094	166341960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_166342691_166344290_166344399_166345246_166345340_166347371_166347507_166351065
transcript_55368.nnic	chr2	-	628	5	NNC	ENSMUSG00000085682.3	novel	604	3	NA	NA	26	493	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	14.1950695665784	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTGCTTTTTTAAAAAAATA	NA	False	NA	NA	False	AATAAA	-16	NA	166349965	166343132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_166343267_166344290_166344399_166345246_166345340_166347371_166347507_166349807
transcript_55377.nic	chr2	+	1030	4	ISM	ENSMUSG00000074582.11	ENSMUST00000099078.10	8770	39	84640	2878	62571	-2878	3prime_fragment	FALSE	canonical	3	194	junction_1	17.0163320241336	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCTAAGTGCGCGGTGT	NA	False	NA	9	True	AATAAA	-21	NA	166732147	166737094	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_166732358_166733686_166733826_166735420_166735539_166736531
transcript_55378.nic	chr2	+	1006	3	ISM	ENSMUSG00000074582.11	ENSMUST00000099078.10	8770	39	85993	2878	63924	-2878	3prime_fragment	FALSE	canonical	3	208	junction_2	13.5	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCTAAGTGCGCGGTGT	NA	False	NA	9	True	AATAAA	-21	NA	166733500	166737094	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_166733826_166735420_166735539_166736531
transcript_55380.known	chr2	+	3641	25	FSM	ENSMUSG00000002718.15	ENSMUST00000002790.14	3641	25	0	0	0	0	multi-exon	FALSE	canonical	3	726	junction_12	67.9214722226255	298	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTTTTTATTGTTTTC	NA	False	NA	37	True	CATAAA	-33	NA	166747978	166788309	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_166748098_166757089_166757185_166761532_166761676_166763889_166763992_166764074_166764221_166764673_166764765_166768270_166768379_166769163_166769257_166769362_166769531_166769632_166769763_166770877_166770944_166771704_166771908_166772501_166772587_166774052_166774115_166776672_166776810_166777842_166777947_166779261_166779360_166781554_166781706_166781829_166782039_166783137_166783236_166783326_166783413_166783934_166784017_166784979_166785127_166786296_166786529_166787623
transcript_55389.known	chr2	-	2976	12	FSM	ENSMUSG00000039536.17	ENSMUST00000109238.9	2976	12	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_8	58.6274129884562	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGTCTTTTTCCAATT	NA	False	NA	-21	True	AATAAA	-9	NA	166838185	166790066	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_166791280_166791663_166791750_166792150_166792274_166792700_166793021_166793190_166793267_166794245_166794393_166795127_166795272_166796819_166797051_166801942_166802042_166805348_166805515_166806498_166806638_166837953
transcript_55390.known	chr2	-	2860	12	FSM	ENSMUSG00000039536.17	ENSMUST00000109236.9	2860	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	83.3006106552479	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTTTTGTTAATTTATT	NA	False	NA	NA	False	AATAAA	-13	NA	166838219	166790192	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_166791280_166791663_166791750_166792150_166792274_166792700_166793021_166793190_166793267_166794245_166794393_166795127_166795266_166796819_166797033_166801942_166802042_166805348_166805515_166806498_166806638_166837953
transcript_55391.known	chr2	+	2714	21	FSM	ENSMUSG00000017999.17	ENSMUST00000018143.16	2714	21	0	0	0	0	multi-exon	FALSE	canonical	3	666	junction_12	71.8993045863449	1966	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCCTGTTGTCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	166857112	166876867	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_166857347_166859662_166859810_166861546_166861607_166861799_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866303_166866478_166868039_166868191_166869588_166869689_166869788_166869931_166870197_166870352_166871199_166871282_166871404_166871583_166873254_166873362_166873470_166873574_166875482_166875578_166875653_166875775_166875955_166876044_166876392_166876465_166876558
transcript_55392.known	chr2	+	2151	8	FSM	ENSMUSG00000017999.17	ENSMUST00000150571.2	2151	8	0	0	0	0	multi-exon	FALSE	canonical	3	722	junction_7	28.1497453499193	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATAGTATTATTTCCCAT	NA	False	NA	NA	False	NA	NA	NA	166857229	166867733	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_166857347_166859662_166859810_166861546_166861607_166861799_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866303
transcript_55405.known	chr2	+	738	5	FSM	ENSMUSG00000074578.15	ENSMUST00000189909.7	738	5	0	0	0	0	multi-exon	FALSE	canonical	3	874	junction_1	47.5105251496971	53782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166904853	166907782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_166905218_166905555_166905648_166907078_166907138_166907353_166907401_166907606
transcript_55406.known	chr2	+	659	4	FSM	ENSMUSG00000074578.15	ENSMUST00000143587.3	659	4	0	0	0	0	multi-exon	FALSE	canonical	3	874	junction_1	54.8351063543137	2376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166905138	166907782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_166905218_166905555_166905648_166907078_166907138_166907353
transcript_55407.known	chr2	+	525	4	FSM	ENSMUSG00000074578.15	ENSMUST00000125841.3	525	4	0	0	0	0	multi-exon	FALSE	canonical	3	874	junction_1	54.7783412186483	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCCAGCCCCACAAGGCT	NA	False	NA	NA	False	AATACA	-21	NA	166905142	166907642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_166905218_166905555_166905648_166907078_166907401_166907606
transcript_55408.known	chr2	+	572	5	FSM	ENSMUSG00000074578.15	ENSMUST00000238277.2	572	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	409.357041590834	2366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166905140	166907782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_166905218_166905555_166905648_166907078_166907138_166907232_166907401_166907606
transcript_55409.known	chr2	+	560	2	FSM	ENSMUSG00000074578.15	ENSMUST00000145859.4	560	2	0	0	0	0	multi-exon	FALSE	canonical	3	874	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTATTTGCAGGCTAGTG	NA	False	NA	NA	False	AATGAA	-12	NA	166905152	166906050	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_166905218_166905555
transcript_55410.known	chr2	-	2107	10	FSM	ENSMUSG00000017969.14	ENSMUST00000018113.8	2107	10	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_8	29.1890390386528	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCGCAGTAGGTAGCAGG	5247	False	NA	NA	False	NA	NA	NA	167082524	167044826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_167045389_167048653_167048806_167049101_167049284_167050100_167050270_167056727_167056910_167063128_167063281_167065904_167066049_167067195_167067375_167069381_167069506_167082263
transcript_55413.nnic	chr2	-	1198	7	NNC	ENSMUSG00000017969.14	novel	2107	10	NA	NA	-13891	-287	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	28.8675134594813	109	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGCTTCCAAATCGGGC	NA	False	NA	-31	True	AATAAA	-22	NA	167064227	167045113	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_167045389_167048653_167048806_167049101_167049284_167050100_167050270_167056727_167056910_167063128_167063281_167064141
transcript_55416.nnic	chr2	+	686	5	Antisense	novelGene_ENSMUSG00000017969.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_2	2.27760839478607	16	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	18	True	NA	NA	False	NA	NA	NA	167062852	167065658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr2_+_167063185_167063338_167063420_167063998_167064039_167065106_167065243_167065561
transcript_55421.nnic	chr2	+	533	5	Antisense	novelGene_ENSMUSG00000017969.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	1.80277563773199	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	42	False	NA	NA	False	NA	NA	NA	167062876	167065658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr2_+_167062971_167063110_167063236_167063338_167063420_167065106_167065243_167065561
transcript_55423.nnic	chr2	-	1050	5	NNC	ENSMUSG00000017969.14	novel	2107	10	NA	NA	-3820	-287	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_4	31.3876966341909	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGCTTCCAAATCGGGC	8858	False	NA	-31	True	AATAAA	-22	NA	167054156	167045113	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_167045389_167048653_167048806_167049101_167049284_167050100_167050270_167053884
transcript_55424.nnic	chr2	-	976	5	NIC	ENSMUSG00000017969.14	novel	2107	10	NA	NA	-12990	-287	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	34.8164831653055	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGCTTCCAAATCGGGC	NA	False	NA	-31	True	AATAAA	-22	NA	167063326	167045113	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_167045389_167048653_167048806_167049101_167049284_167050100_167050270_167063128
transcript_55425.nnic	chr2	+	646	4	Antisense	novelGene_ENSMUSG00000017969.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	1.69967317119759	38	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	18	True	NA	NA	False	NA	NA	NA	167062852	167065658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr2_+_167063185_167063338_167063420_167065106_167065243_167065561
transcript_55427.nnic	chr2	+	674	4	Antisense	novelGene_ENSMUSG00000017969.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	6	junction_2	1.24721912892465	17	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	41	False	NA	NA	False	NA	NA	NA	167062875	167065658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr2_+_167063236_167063338_167063420_167065106_167065243_167065561
transcript_55430.nnic	chr2	-	705	4	NNC	ENSMUSG00000017969.14	novel	2107	10	NA	NA	712	-287	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	37.8505834389203	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGCTTCCAAATCGGGC	7307	False	NA	-31	True	AATAAA	-22	NA	167049624	167045113	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_167045389_167048653_167048806_167049101_167049284_167049528
transcript_55433.known	chr2	-	1119	3	FSM	ENSMUSG00000050556.10	ENSMUST00000148226.3	1119	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGCAGCCCCTGAATGT	7812	False	NA	NA	False	NA	NA	NA	166943090	166940827	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_166941781_166942647_166942736_166943012
transcript_55434.known	chr2	+	4521	17	FSM	ENSMUSG00000039463.15	ENSMUST00000047815.13	4521	17	0	0	0	0	multi-exon	TRUE	non_canonical	2	49	junction_9	20.9574531790005	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTTGTGTCACGTGTT	NA	False	NA	7	True	AATAAA	-20	NA	167263631	167318920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_167263686_167266038_167266218_167276701_167276783_167283048_167283108_167285368_167285453_167287425_167287528_167288421_167288457_167293126_167293271_167299246_167299386_167301568_167301675_167307260_167307378_167309604_167309688_167310883_167310996_167313301_167313523_167315353_167315501_167315947_167316096_167316210
transcript_5544.nic	chr1	-	911	6	NIC	ENSMUSG00000055067.16	novel	402	2	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	159.587468179679	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATACAGATGTCATTGTC	NA	False	NA	NA	False	AATAAA	-20	NA	179345631	179205099	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_179205365_179232847_179232985_179237971_179238030_179239242_179239351_179250919_179250984_179345352
transcript_55444.nnic	chr2	+	409	3	NNC	ENSMUSG00000039463.15	novel	1476	3	NA	NA	-14	2860	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	47	48	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTGGTGTAGAAATAAGTG	NA	False	NA	NA	False	ATTAAA	-13	NA	167263617	167270914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_167263686_167266038_167266218_167270752
transcript_55445.known	chr2	+	2059	2	FSM	ENSMUSG00000039463.15	ENSMUST00000150326.2	2059	2	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACAAAAAACCCATGAG	NA	False	NA	NA	False	ACTAAA	-7	NA	167263642	167268054	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_167263686_167266038
transcript_55448.known	chr2	+	1476	3	FSM	ENSMUSG00000039463.15	ENSMUST00000124139.8	1476	3	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	14.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCAAAAAAAGAAGGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	167263656	167277969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_167263686_167266038_167266218_167276701
transcript_55449.nnic	chr2	+	1115	7	NNC	ENSMUSG00000006418.18	novel	3001	8	NA	NA	-63	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_6	219.784490404173	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTAAGCTGCAATGTTTT	NA	False	NA	17	True	AATAAA	-18	NA	167345302	167358086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_167345522_167348966_167349118_167352795_167352903_167353131_167353247_167354436_167354545_167356585_167356701_167357786
transcript_5545.known	chr1	-	1229	6	FSM	ENSMUSG00000055067.16	ENSMUST00000111134.2	1229	6	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	165.062412438447	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGTAGATCAAGGGGCAG	NA	False	NA	NA	False	NA	NA	NA	179345606	179222788	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_179223397_179232847_179232985_179237971_179238030_179239242_179239351_179250919_179250984_179345352
transcript_55450.known	chr2	+	2502	6	FSM	ENSMUSG00000006418.18	ENSMUST00000078050.7	2502	6	0	0	0	0	multi-exon	FALSE	canonical	3	578	junction_2	31.1088411870323	615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCAATGTTTTCATTTAA	NA	False	NA	24	True	AATAAA	-25	NA	167345008	167358093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_167345522_167348966_167349118_167352795_167352903_167353131_167353247_167354436_167354545_167356585
transcript_55458.known	chr2	+	1985	5	FSM	ENSMUSG00000006418.18	ENSMUST00000127939.2	1985	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	262.348051260153	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAGTAAGCTGCAATGTT	NA	False	NA	15	True	AATAAA	-16	NA	167345365	167358084	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_167345522_167352795_167352903_167353131_167353247_167354436_167354545_167356585
transcript_55459.known	chr2	-	4012	3	FSM	ENSMUSG00000047030.16	ENSMUST00000057627.16	4012	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	1	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAGCCGAAGATTTTTTTC	4582	False	NA	NA	False	ATTAAA	-17	NA	167334807	167323052	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_167326500_167327077_167327514_167334678
transcript_55461.known	chr2	+	1621	3	FSM	ENSMUSG00000042821.8	ENSMUST00000052631.8	1621	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	2	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTCAGTGTTGGGGTGGG	4755	False	NA	NA	False	AATAAA	-24	NA	167380114	167384734	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_167380292_167380590_167381119_167383818
transcript_55463.known	chr2	-	2041	4	FSM	ENSMUSG00000078923.11	ENSMUST00000109207.10	2041	4	0	0	0	0	multi-exon	FALSE	canonical	3	2167	junction_3	78.0555357848927	2103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCAGGCTGTGCCCTTCTT	9318	False	NA	NA	False	AATAAA	-19	NA	167474015	167449557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_167451168_167452223_167452350_167459748_167459898_167473859
transcript_55464.known	chr2	-	1586	3	FSM	ENSMUSG00000078923.11	ENSMUST00000060645.13	1586	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	1070	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCGGTGGTTTTATTTTAA	9441	False	NA	NA	False	AATAAA	-22	NA	167473892	167449763	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_167451168_167459748_167459898_167473859
transcript_55465.known	chr2	-	433	4	FSM	ENSMUSG00000078923.11	ENSMUST00000140216.2	433	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1096.89045335743	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTGAGTCCCCCACTGC	9434	False	NA	NA	False	NA	NA	NA	167473899	167452227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_167452350_167459748_167459898_167471086_167471209_167473859
transcript_55466.known	chr2	-	433	2	FSM	ENSMUSG00000078923.11	ENSMUST00000144830.2	433	2	0	0	0	0	multi-exon	FALSE	canonical	3	2167	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCAGCTGAGTTCAAGACA	9431	False	NA	NA	False	NA	NA	NA	167473902	167459507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_167459898_167473859
transcript_55469.known	chr2	+	4292	10	FSM	ENSMUSG00000027540.14	ENSMUST00000126839.8	4292	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	47.9021636666927	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGCGTGATGTGCTTGCCT	1105	False	NA	10	True	AATAAA	-16	NA	167774291	167821305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_167774477_167793875_167794000_167805547_167805639_167806929_167807031_167809648_167809748_167813612_167813751_167815979_167816190_167816648_167816811_167817228_167817450_167818344
transcript_55471.known	chr2	+	4213	9	FSM	ENSMUSG00000027540.14	ENSMUST00000029053.8	4213	9	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_4	11.7997616501351	512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGCGTGATGTGCTTGCCT	1060	False	NA	10	True	AATAAA	-16	NA	167774246	167821305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_167774477_167805547_167805639_167806929_167807031_167809648_167809748_167813612_167813751_167815979_167816190_167816648_167816811_167817228_167817450_167818344
transcript_55477.known	chr2	+	3399	3	FSM	ENSMUSG00000044641.8	ENSMUST00000052125.7	3399	3	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	5.5	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTTGTTTGAAATTACA	NA	False	NA	NA	False	AATAAA	-22	NA	167922923	167943123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_167923280_167929261_167929485_167940303
transcript_55483.nnic	chr2	+	1425	4	Genic_Genomic	ENSMUSG00000118526.3	novel	577	8	NA	NA	24898	-23530	multi-exon	FALSE	canonical	0	0	junction_2	1.69967317119759	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTGTAGTGTGTGTGCA	NA	False	NA	NA	False	ATTAAA	-21	NA	167981694	167991054	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr2_+_167981813_167987089_167987222_167989471_167989554_167989961
transcript_55484.nnic	chr2	+	1251	4	Genic_Genomic	ENSMUSG00000118526.3	novel	577	8	NA	NA	24898	-23538	multi-exon	FALSE	canonical	1	2	junction_3	0.471404520791032	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTACTTATTGTAGTG	NA	False	NA	NA	False	ATTAAA	-13	NA	167981694	167991046	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr2_+_167981813_167987089_167987222_167989961_167990062_167990145
transcript_55485.nnic	chr2	-	887	4	NNC	ENSMUSG00000087648.2	novel	1309	2	NA	NA	-6	4	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	10.3708994574027	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTAGCTACTTTATTTGGC	7123	False	NA	0	True	NA	NA	NA	167996439	167994518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_167994845_167994957_167995094_167995412_167995672_167996273
transcript_55492.nic	chr2	-	750	3	NIC	ENSMUSG00000085267.2	novel	366	2	NA	NA	-986	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	11	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGGTATTCTGTGAGCAG	7123	False	NA	NA	False	AATAAA	-13	NA	167996439	167989936	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_167990262_167995412_167995672_167996273
transcript_55496.nnic	chr2	+	1069	2	Intergenic	novelGene_76	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATTCTTTAAATTGATTT	NA	False	NA	NA	False	NA	NA	NA	168003108	168004344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr2_+_168003686_168003852
transcript_55497.nnic	chr2	+	624	2	Intergenic	novelGene_77	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCCAGTGGATTTTGGTGG	NA	False	NA	NA	False	NA	NA	NA	168003440	168004241	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr2_+_168003676_168003852
transcript_55498.nnic	chr2	+	556	2	Intergenic	novelGene_78	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATTCTTTAAATTGATTT	NA	False	NA	NA	False	NA	NA	NA	168003611	168004344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr2_+_168003676_168003852
transcript_55499.known	chr2	-	1309	2	FSM	ENSMUSG00000087648.2	ENSMUST00000129713.2	1309	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACATTAGCTACTTTATT	7129	False	NA	-4	True	NA	NA	NA	167996433	167994522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_167995672_167996273
transcript_55501.known	chr2	-	1076	9	FSM	ENSMUSG00000078919.11	ENSMUST00000109193.8	1076	9	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_8	149.583118616373	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCTGCTTTCATTTAGA	NA	False	NA	-19	True	AATAAA	-23	NA	168072511	168052200	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072308
transcript_5551.nnic	chr1	-	1432	3	NNC	ENSMUSG00000055067.16	novel	1047	2	NA	NA	-6	403	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3.5	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAAACTGTCCTTTTTCTT	NA	False	NA	NA	False	AATAAA	-1	NA	179345612	179335468	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_179335900_179335959_179336701_179345352
transcript_55512.known	chr2	-	2293	9	FSM	ENSMUSG00000078919.11	ENSMUST00000154111.8	2293	9	0	0	0	0	multi-exon	FALSE	canonical	3	450	junction_3	8.66656650583148	3716	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATAATGTTATCGAATTGT	NA	False	NA	NA	False	ATTAAA	-27	NA	168072299	168050967	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072112
transcript_55513.known	chr2	-	722	8	FSM	ENSMUSG00000078919.11	ENSMUST00000099072.11	722	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	159.537469209063	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACCACATAAAAGAAATGAT	NA	False	NA	-40	True	AATGAA	-39	NA	168072248	168052461	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061956_168062034_168065040_168065075_168069322_168069423_168072112
transcript_55514.known	chr2	-	2310	7	FSM	ENSMUSG00000027544.17	ENSMUST00000029057.13	2310	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.10554159678513	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGCATGTGTCATGCTGA	NA	False	NA	NA	False	NA	NA	NA	168432111	168361017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_168361473_168365157_168365299_168376837_168377011_168378122_168378326_168409058_168409231_168412517_168413554_168431981
transcript_55516.known	chr2	-	2174	3	FSM	ENSMUSG00000027544.17	ENSMUST00000138546.2	2174	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	168432285	168408396	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_168409231_168412517_168413554_168431981
transcript_55517.known	chr2	-	3729	28	FSM	ENSMUSG00000027546.16	ENSMUST00000109175.9	3729	28	0	0	0	0	multi-exon	TRUE	canonical	3	71	junction_27	47.3339708993171	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGCAGGCTTTTCATTTT	NA	False	NA	-23	True	GATAAA	-16	NA	168576259	168476357	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_168476829_168479420_168479625_168480989_168481048_168481801_168481911_168482550_168482616_168485781_168485938_168489604_168489670_168490474_168490620_168490710_168490801_168491448_168491548_168494487_168494659_168495413_168495498_168496095_168496189_168503848_168504011_168509925_168510139_168515396_168515510_168516711_168516855_168517120_168517282_168518061_168518139_168523895_168523972_168525632_168525714_168529260_168529356_168531218_168531271_168532885_168532945_168547042_168547152_168548114_168548229_168552751_168552897_168575940
transcript_5552.known	chr1	-	1047	2	FSM	ENSMUSG00000055067.16	ENSMUST00000194237.2	1047	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTTTCTATTTATTTAT	NA	False	NA	NA	False	ATTAAA	-17	NA	179345570	179335871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_179336701_179345352
transcript_55520.known	chr2	-	2484	14	FSM	ENSMUSG00000027546.16	ENSMUST00000140188.8	2484	14	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_13	32.0469330382763	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATGTGTGTTTATTATTA	6623	False	NA	NA	False	AAGAAA	-18	NA	168583720	168508998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_168510139_168515396_168515510_168516711_168516855_168517120_168517282_168518061_168518139_168523895_168523972_168525632_168525714_168529260_168529356_168531218_168531271_168532885_168532945_168547042_168547152_168548114_168548229_168552751_168552897_168583601
transcript_55523.nic	chr2	-	1482	8	ISM	ENSMUSG00000027546.16	ENSMUST00000109175.9	3729	28	4	48763	4	7784	5prime_fragment	FALSE	canonical	3	71	junction_7	64.9426748787588	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAAATGGCCTGCGTTCTC	NA	False	NA	NA	False	ATTAAA	-20	NA	168576255	168525120	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_168525714_168529260_168529356_168531218_168531271_168532885_168532945_168547042_168547152_168548114_168548229_168552751_168552897_168575940
transcript_55527.known	chr2	-	5073	4	FSM	ENSMUSG00000027547.18	ENSMUST00000029061.12	5073	4	0	0	0	0	multi-exon	FALSE	canonical	3	532	junction_3	46.1808040928985	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGGGCTTGTGTGTATGCT	NA	False	NA	-17	True	AATAAA	-22	NA	168609121	168590251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_168592381_168594373_168594661_168596353_168598721_168608831
transcript_55528.known	chr2	-	773	2	FSM	ENSMUSG00000027547.18	ENSMUST00000137536.2	773	2	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGGGGCCGACACGCTGAA	NA	False	NA	NA	False	NA	NA	NA	168607166	168598100	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_168598721_168607013
transcript_55529.nic	chr2	-	2083	5	NIC	ENSMUSG00000027551.16	novel	2848	9	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	9.69535971483266	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGATGTGAGCGTCATTTCC	NA	False	NA	NA	False	AATAAA	-22	NA	168754568	168735250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_168736454_168741704_168741957_168748003_168748067_168748759_168748910_168754153
transcript_55531.known	chr2	-	2438	6	FSM	ENSMUSG00000027551.16	ENSMUST00000087971.11	2438	6	0	0	0	0	multi-exon	FALSE	canonical	3	382	junction_1	95.1075181045116	777	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTGTATTGTATAGTTT	NA	False	NA	0	True	AATAAA	-29	NA	168797192	168767280	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_168768854_168777130_168777383_168781890_168781954_168782656_168782819_168793464_168793699_168797038
transcript_55532.known	chr2	-	1009	6	FSM	ENSMUSG00000027551.16	ENSMUST00000109161.3	1009	6	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	185.215982031789	466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTACTGTTGTTACCATT	NA	False	NA	-1	True	TATAAA	-19	NA	168797209	168776732	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_168776860_168777130_168777383_168781890_168781954_168782656_168782819_168793464_168793699_168797038
transcript_55533.known	chr2	-	2848	9	FSM	ENSMUSG00000027551.16	ENSMUST00000109162.9	2848	9	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	271.408824469655	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGATGTGAGCGTCATTTCC	NA	False	NA	NA	False	AATAAA	-22	NA	168797507	168735250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_168736454_168741704_168741957_168748003_168748067_168748759_168748910_168777130_168777383_168781890_168781954_168782656_168782819_168793464_168793699_168797038
transcript_55534.known	chr2	+	473	2	FSM	ENSMUSG00000086348.2	ENSMUST00000140241.2	473	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGTTCTCTATAGCTTGT	NA	False	NA	NA	False	AATAAA	-22	NA	168820187	168820826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_168820481_168820646
transcript_55539.nnic	chr2	+	1299	3	Intergenic	novelGene_79	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	9	junction_2	9	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTGATTATTGTTATTG	NA	False	NA	NA	False	TTTAAA	-7	NA	168847904	168866334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr2_+_168848074_168864580_168864668_168865291
transcript_55540.nnic	chr2	+	787	3	Intergenic	novelGene_80	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	16	junction_2	5.5	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTTTTAATGTATGTGTT	NA	False	NA	NA	False	TATAAA	-15	NA	168847904	168878772	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr2_+_168848074_168864580_168864668_168878241
transcript_55548.known	chr2	-	5670	7	FSM	ENSMUSG00000052056.15	ENSMUST00000109155.8	5670	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	14.599276998841	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTGGTGTCGTGGTTTTC	NA	False	NA	-3	True	AATATA	-17	NA	169984598	169950565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_169952576_169954399_169954535_169955980_169957493_169958061_169958179_169960938_169962674_169973576_169973673_169984533
transcript_55552.known	chr2	-	688	4	FSM	ENSMUSG00000013523.14	ENSMUST00000133673.8	688	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	32.9983164553722	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGTAGATCGAGGTGTA	NA	False	NA	NA	False	AATGAA	-26	NA	170199033	170189864	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_170190069_170191101_170191384_170198167_170198234_170198897
transcript_55553.known	chr2	-	594	3	FSM	ENSMUSG00000013523.14	ENSMUST00000156657.8	594	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	33.5	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTATTATTTACGTCTCT	4201	False	NA	NA	False	AATGAA	-40	NA	170191660	170189850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_170190069_170191101_170191384_170191566
transcript_55555.known	chr2	-	371	3	FSM	ENSMUSG00000013523.14	ENSMUST00000152461.2	371	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	23.5	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAATCCAAGTAAACAAA	4146	False	NA	NA	False	NA	NA	NA	170191715	170190008	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_170190069_170191101_170191384_170191686
transcript_55556.known	chr2	-	1014	5	FSM	ENSMUSG00000013523.14	ENSMUST00000145920.2	1014	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.82915619758885	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTTTTGTGGAGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	170269765	170239451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_170239635_170248193_170248769_170260526_170260606_170262510_170262588_170269665
transcript_55558.known	chr2	+	736	4	FSM	ENSMUSG00000052033.14	ENSMUST00000109148.8	736	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	387.259029017472	1128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGTAGTATCCGACAGAGAT	4127	False	NA	68	True	AAGAAA	-1	NA	170353439	170361043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_170353476_170357658_170357767_170358469_170358611_170360592
transcript_55559.known	chr2	+	666	4	FSM	ENSMUSG00000052033.14	ENSMUST00000170167.8	666	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	391.486341467433	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCGTCCATCCAGCGGGT	4167	False	NA	NA	False	NA	NA	NA	170353479	170360631	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_170353858_170357658_170357767_170358469_170358611_170360592
transcript_55563.known	chr2	+	452	4	FSM	ENSMUSG00000052033.14	ENSMUST00000136839.2	452	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	373.855884295302	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAATTTCCCTTCTCCAAA	4052	False	NA	10	True	AATAAA	-20	NA	170353364	170360782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_170353390_170357658_170357767_170358481_170358611_170360592
transcript_55564.known	chr2	+	1768	8	FSM	ENSMUSG00000027560.5	ENSMUST00000029075.5	1768	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	9.45666809339164	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCGTTAGTTCTTTCTGCAC	NA	False	NA	14	True	AATAAA	-15	NA	170573726	170721689	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_170574109_170642769_170642878_170671759_170671875_170671988_170672109_170674801_170674992_170683339_170683476_170712730_170712852_170721093
transcript_55566.nnic	chr2	+	1041	3	NNC	ENSMUSG00000027560.5	novel	1768	8	NA	NA	131686	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	4	108	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCGTTAGTTCTTTCTGCAC	NA	False	NA	14	True	AATAAA	-15	NA	170705412	170721689	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_170705737_170712730_170712852_170721093
transcript_55570.nnic	chr2	+	621	4	Intergenic	novelGene_81	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCACACCCAGCTGACACG	NA	False	NA	NA	False	NA	NA	NA	172127335	172136561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr2_+_172127474_172134257_172134405_172135339_172135530_172136415
transcript_55571.nnic	chr2	+	764	4	NNC	ENSMUSG00000085949.2	novel	430	2	NA	NA	1944	4121	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCACACCCAGCTGACACG	NA	False	NA	NA	False	NA	NA	NA	172131996	172136561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_172132278_172134257_172134405_172135339_172135530_172136415
transcript_55573.nnic	chr2	+	445	3	Intergenic	novelGene_82	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACGTGCACACCCAGCTG	NA	False	NA	NA	False	NA	NA	NA	172127335	172136575	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr2_+_172127474_172134257_172134405_172136415
transcript_55574.nnic	chr2	+	588	3	NNC	ENSMUSG00000085949.2	novel	430	2	NA	NA	1944	4135	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACGTGCACACCCAGCTG	NA	False	NA	NA	False	NA	NA	NA	172131996	172136575	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_172132278_172134257_172134405_172136415
transcript_55576.known	chr2	+	430	2	FSM	ENSMUSG00000085949.2	ENSMUST00000152112.2	430	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACACAGGTATTCAGTTTT	NA	False	NA	NA	False	NA	NA	NA	172130052	172132440	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_172130194_172132151
transcript_55578.known	chr2	+	3617	3	FSM	ENSMUSG00000027495.5	ENSMUST00000028995.5	3617	3	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_1	7.5	520	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGGTCTGCCGTCTGGTAA	NA	False	NA	NA	False	AATAAA	-17	NA	172187484	172197669	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_172187768_172193374_172193545_172194505
transcript_55581.known	chr2	-	1905	9	FSM	ENSMUSG00000027496.16	ENSMUST00000109139.8	1905	9	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_8	405.788969169937	3637	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGAGTACGTGGGTAATC	NA	False	NA	-8	True	AATATA	-16	NA	172212426	172198115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172212314
transcript_5559.known	chr1	-	2449	8	FSM	ENSMUSG00000026492.12	ENSMUST00000027769.6	2449	8	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	6.92820323027551	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTGTGTATATGTGTGT	7878	False	NA	NA	False	AATAAA	-15	NA	179373832	179355619	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_179356920_179358868_179359030_179359629_179359693_179361197_179361288_179365263_179365413_179369871_179370023_179372462_179372552_179373386
transcript_55591.known	chr2	-	1862	9	FSM	ENSMUSG00000027496.16	ENSMUST00000109140.10	1862	9	0	0	0	0	multi-exon	FALSE	canonical	3	1025	junction_8	140.198965759381	5205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACGTGGGTAATCATTTGA	NA	False	NA	-2	True	AATATA	-22	NA	172212455	172198109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172212392
transcript_55593.nic	chr2	+	2016	6	NIC	ENSMUSG00000027498.15	novel	3451	6	NA	NA	-50	-1367	combination_of_known_junctions	FALSE	canonical	3	132	junction_1	102.721760109531	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCACTGTTCCTCCTTCTT	NA	False	NA	15	True	AATAAA	-15	NA	172212550	172223001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_172212777_172214848_172215050_172217557_172217836_172217971_172218170_172219535_172219927_172222279
transcript_55596.known	chr2	+	3451	6	FSM	ENSMUSG00000027498.15	ENSMUST00000116375.2	3451	6	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_1	74.6527963307471	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGTGACGTAAAGGTAGTTT	NA	False	NA	13	True	AATAAA	-20	NA	172212653	172224368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_172212948_172214848_172215050_172217557_172217836_172217971_172218170_172219535_172219927_172222279
transcript_55597.known	chr2	+	674	4	FSM	ENSMUSG00000027498.15	ENSMUST00000151511.8	674	4	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_1	125.757261773978	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACAACAGAACATGGAGAAC	NA	False	NA	NA	False	NA	NA	NA	172212600	172217990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_172212777_172214848_172215050_172217557_172217836_172217971
transcript_55603.known	chr2	+	2173	9	FSM	ENSMUSG00000027502.12	ENSMUST00000029005.4	2173	9	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_4	19.7416912902618	949	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGGGGTTGGTTTTGCTT	NA	False	NA	16	True	AATAAA	-16	NA	172282475	172311828	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_172282660_172286566_172286662_172287246_172287341_172288541_172288682_172288954_172289034_172305096_172305211_172308193_172308252_172308348_172308445_172310515
transcript_55604.known	chr2	+	944	8	FSM	ENSMUSG00000027502.12	ENSMUST00000109132.10	944	8	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_4	20.1382973562355	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCTTACTGTTGTGCAAG	NA	False	NA	NA	False	ATTAAA	-31	NA	172282521	172308574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_172282660_172286566_172286662_172287246_172287341_172288541_172288682_172288954_172289034_172305096_172305211_172308193_172308252_172308348
transcript_55605.known	chr2	+	698	2	FSM	ENSMUSG00000027505.3	ENSMUST00000029007.3	698	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAACCCCTCTTGTTTGTTT	NA	False	NA	NA	False	AAGAAA	-32	NA	172314439	172316251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_172314762_172315875
transcript_55609.known	chr2	-	171	1	FSM	ENSMUSG00000081344.6	ENSMUST00000121320.2	171	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1359	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGACCTTGAATGGATTCGA	NA	False	NA	NA	False	NA	NA	NA	172351611	172351440	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_172351400_172351600
transcript_55612.known	chr2	+	2838	7	FSM	ENSMUSG00000028640.12	ENSMUST00000030391.9	2838	7	0	0	0	0	multi-exon	FALSE	canonical	3	551	junction_1	51.676611946046	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGTTCTGACCCTTTTT	NA	False	NA	25	True	AATAAA	-27	NA	172391512	172400542	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_172391803_172393326_172393810_172393915_172393968_172395335_172395553_172395960_172396080_172397984_172398130_172399010
transcript_55615.known	chr2	+	2776	7	FSM	ENSMUSG00000028640.12	ENSMUST00000170744.2	2776	7	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	218.277091992927	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTCTGGTTCTGACCCTT	NA	False	NA	22	True	AATAAA	-24	NA	172392910	172400539	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_172393142_172393326_172393810_172393915_172393968_172395335_172395553_172395960_172396080_172397984_172398130_172399010
transcript_55617.known	chr2	+	2724	7	FSM	ENSMUSG00000028640.12	ENSMUST00000128406.8	2724	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	241.022589997056	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGAATCTCTGAAAGTCTG	NA	False	NA	10	True	AATAAA	-12	NA	172392572	172400527	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_172392764_172393326_172393810_172393915_172393968_172395335_172395553_172395960_172396080_172397984_172398130_172399010
transcript_55620.known	chr2	-	3670	7	FSM	ENSMUSG00000008999.8	ENSMUST00000009143.8	3670	7	0	0	0	0	multi-exon	TRUE	canonical	3	82	junction_3	13.8734358477712	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGTGTATTTGTGTCTT	NA	False	NA	1	True	AATAAA	-30	NA	172782114	172709804	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_172712080_172714664_172714776_172717007_172717085_172721118_172721317_172735240_172735390_172758259_172758453_172781447
transcript_55626.nic	chr2	+	1565	12	NIC	ENSMUSG00000027509.12	novel	1742	12	NA	NA	-8	-59	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	326.651961776187	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCCCTTCATCCCTTT	NA	False	NA	26	True	AATAAA	-15	NA	172841901	172857473	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_172842044_172844451_172844547_172845299_172845405_172846952_172847046_172848673_172848761_172849852_172849940_172850036_172850109_172851162_172851271_172853792_172853900_172853972_172854049_172854419_172854615_172857075
transcript_55627.known	chr2	+	1742	12	FSM	ENSMUSG00000027509.12	ENSMUST00000029013.10	1742	12	0	0	0	0	multi-exon	FALSE	canonical	3	1013	junction_10	106.078950794457	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTATGTTCCAAGTTTCTC	NA	False	NA	85	True	NA	NA	NA	172841909	172857532	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_172842170_172844451_172844547_172845299_172845405_172846952_172847046_172848673_172848761_172849852_172849940_172850036_172850109_172851162_172851271_172853792_172853900_172853972_172854049_172854419_172854615_172857075
transcript_55634.known	chr2	+	1768	4	FSM	ENSMUSG00000027510.18	ENSMUST00000029014.16	1768	4	0	0	0	0	multi-exon	FALSE	canonical	3	657	junction_1	63.0766729200793	677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAAAGGTGGTTTGAG	NA	False	NA	NA	False	AATAAA	-14	NA	172863694	172876518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_172864064_172864584_172864709_172865119_172865175_172875298
transcript_55635.known	chr2	+	936	4	FSM	ENSMUSG00000027510.18	ENSMUST00000173878.8	936	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	369.719713657071	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTCTTCTGCAGCCCTG	NA	False	NA	NA	False	NA	NA	NA	172863691	172875706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_172864041_172864584_172864709_172865119_172865175_172875298
transcript_55636.known	chr2	+	620	4	FSM	ENSMUSG00000027510.18	ENSMUST00000173720.2	620	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	365.954763446097	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAGTACCCATATGCTGC	NA	False	NA	NA	False	NA	NA	NA	172863903	172875443	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_172864200_172864584_172864709_172865119_172865175_172875298
transcript_55637.known	chr2	+	440	4	FSM	ENSMUSG00000027510.18	ENSMUST00000173997.2	440	4	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_1	361.719351001421	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGCTGCCGTGCCCCAAG	NA	False	NA	NA	False	NA	NA	NA	172864230	172875502	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_172864288_172864584_172864709_172865119_172865175_172875298
transcript_55638.known	chr2	-	770	4	FSM	ENSMUSG00000027514.15	ENSMUST00000109116.3	770	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	0.816496580927726	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGTTTCATCCCAAGTA	1412	False	NA	NA	False	AATAAA	-25	NA	173060703	173055527	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_173055703_173057469_173057659_173058564_173058802_173060534
transcript_55644.known	chr2	+	646	4	FSM	ENSMUSG00000027518.4	ENSMUST00000029023.4	646	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTTGTATGTTTGTTGA	NA	False	NA	NA	False	AATAGA	-17	NA	173364378	173370294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_173364525_173367796_173367879_173369637_173369740_173369978
transcript_55651.nic	chr2	-	995	7	NIC	ENSMUSG00000055897.14	novel	5637	16	NA	NA	-6	8	combination_of_known_junctions	TRUE	canonical	2	5	junction_3	8.33999733546454	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCTCTTTCTCCTTGATT	NA	False	NA	NA	False	ATTAAA	-17	NA	173501338	173437890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_173438321_173438832_173438981_173441382_173441481_173450525_173450673_173457275_173457370_173501115_173501161_173501305
transcript_55656.nic	chr2	-	995	6	NIC	ENSMUSG00000055897.14	novel	755	6	NA	NA	-3	8	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	5.17687164221791	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCTCTTTCTCCTTGATT	NA	False	NA	NA	False	ATTAAA	-17	NA	173501436	173437890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_173438321_173438832_173438981_173450525_173450673_173457275_173457370_173501115_173501161_173501305
transcript_55658.known	chr2	-	755	6	FSM	ENSMUSG00000055897.14	ENSMUST00000142320.8	755	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	7.55248303539968	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAAATTGTCTCTTTCT	NA	False	NA	NA	False	ATTAAA	-9	NA	173501332	173437898	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_173438193_173438832_173438981_173450525_173450673_173457275_173457370_173501115_173501161_173501305
transcript_55660.nic	chr2	-	812	5	NIC	ENSMUSG00000055897.14	novel	755	6	NA	NA	-15	8	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	5.8309518948453	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCTCTTTCTCCTTGATT	NA	False	NA	NA	False	ATTAAA	-17	NA	173501347	173437890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_173438321_173438832_173438981_173450525_173450673_173501115_173501161_173501305
transcript_55669.nic	chr2	-	665	2	ISM	ENSMUSG00000055897.14	ENSMUST00000142320.8	755	6	0	62624	0	-43460	5prime_fragment	FALSE	canonical	3	30	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAACCCAGGGAGGCTT	NA	False	NA	NA	False	NA	NA	NA	173501332	173500522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_173501161_173501305
transcript_55670.known	chr2	+	7155	7	FSM	ENSMUSG00000027519.11	ENSMUST00000029024.10	7155	7	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_6	19.3512847692917	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGTGGCATTCATTACG	NA	False	NA	27	True	AATAAA	-40	NA	173501552	173549136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_173501935_173503224_173503305_173529939_173530022_173536902_173536975_173537051_173537159_173537682_173537793_173542814
transcript_55671.known	chr2	+	7045	6	FSM	ENSMUSG00000027519.11	ENSMUST00000142820.8	7045	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	72.9191332916128	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGCGTGTTTCAGCCT	NA	False	NA	-1	True	AATAAA	-12	NA	173501552	173549108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_173501935_173503224_173503305_173536902_173536975_173537051_173537159_173537682_173537793_173542814
transcript_55673.known	chr2	+	7032	6	FSM	ENSMUSG00000054455.6	ENSMUST00000067530.6	7032	6	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	5.74804314527997	428	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGATTCCGTGTATAATT	NA	False	NA	NA	False	AATAAA	-25	NA	173579303	173626132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_173579544_173603909_173604063_173613313_173613418_173616186_173616268_173617904_173618082_173619855
transcript_55675.known	chr2	-	475	1	FSM	ENSMUSG00000082543.2	ENSMUST00000117491.2	475	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	192	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTACACAAAGAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	173762619	173762144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_173762100_173762600
transcript_5568.nic	chr1	-	1839	7	NIC	ENSMUSG00000026492.12	novel	2449	8	NA	NA	-51	305	combination_of_known_junctions	FALSE	canonical	2	8	junction_6	27.6008252694653	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTACTGCACATGCGCACA	7827	False	NA	NA	False	NA	NA	NA	179373883	179356191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_179356920_179358868_179359030_179359629_179359693_179361197_179361288_179365263_179365413_179369871_179370023_179373386
transcript_55680.known	chr2	+	3865	9	FSM	ENSMUSG00000027522.16	ENSMUST00000087908.10	3865	9	0	0	0	0	multi-exon	TRUE	canonical	1	10	junction_1	35.0633355515416	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGCATTCCTAGTATTAA	NA	False	NA	126	True	AATAAA	-24	NA	173918714	173941564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_173918983_173926438_173926451_173932413_173932522_173933274_173933416_173934194_173934361_173935226_173935319_173935721_173935866_173936852_173936934_173938711
transcript_55685.known	chr2	+	2467	12	FSM	ENSMUSG00000039263.17	ENSMUST00000044415.16	2467	12	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_9	24.2330284822489	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTACCTGTGATTCCTGG	NA	False	NA	NA	False	CATAAA	-14	NA	173952141	173964863	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_173952366_173952869_173953056_173953406_173953578_173955689_173955780_173956189_173956272_173957843_173957987_173961185_173961264_173962019_173962121_173962336_173962461_173962740_173962918_173963271_173963383_173963883
transcript_55686.known	chr2	+	2465	13	FSM	ENSMUSG00000027523.21	ENSMUST00000109096.9	2465	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	315.710959141779	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGTGTTGCTCTTTGATT	5258	False	NA	15	True	AATAAA	-19	NA	174126112	174188537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_174126302_174126396_174127271_174176004_174176078_174178539_174178585_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
transcript_55688.nic	chr2	+	1684	12	NIC	ENSMUSG00000027523.21	novel	3903	13	NA	NA	-39	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_1	236.631666212588	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGTGTTGCTCTTTGATT	NA	False	NA	15	True	AATAAA	-19	NA	174169452	174188537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_174169735_174176004_174176078_174178539_174178585_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
transcript_55689.known	chr2	+	1716	12	FSM	ENSMUSG00000027523.21	ENSMUST00000109087.8	1716	12	0	0	0	0	multi-exon	FALSE	canonical	3	678	junction_2	91.1435159288239	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATCAATAAAAATTAA	NA	False	NA	-17	True	NA	NA	NA	174171881	174188505	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_174172228_174176004_174176078_174178539_174178585_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
transcript_55693.known	chr2	+	1695	11	FSM	ENSMUSG00000027523.21	ENSMUST00000109084.8	1695	11	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_2	245.35078968693	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGTGTTGCTCTTTGATT	NA	False	NA	15	True	AATAAA	-19	NA	174171889	174188537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_174172228_174176004_174176078_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
transcript_55697.known	chr2	-	1262	5	FSM	ENSMUSG00000086537.8	ENSMUST00000150276.2	1262	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.27760839478607	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGCATTAGCACTGCTC	NA	False	NA	NA	False	ATTAAA	-36	NA	174137182	174123986	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_174124296_174125048_174125218_174126252_174126459_174127932_174128191_174136862
transcript_55699.nnic	chr2	-	1576	4	Antisense	novelGene_ENSMUSG00000027523.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	14	junction_1	3.2659863237109	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCATGCCCTCTAGATTG	483	False	NA	NA	False	NA	NA	NA	174169222	174163257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr2_-_174163991_174165456_174165759_174167686_174167944_174168938
transcript_55702.known	chr2	-	2248	5	FSM	ENSMUSG00000086537.8	ENSMUST00000151472.8	2248	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.27760839478607	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAATTGAGTCACTTTTA	NA	False	NA	NA	False	AATAAA	-18	NA	174137229	174123029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_174124296_174125048_174125200_174126252_174126459_174127932_174128191_174136862
transcript_55708.known	chr2	+	2279	15	FSM	ENSMUSG00000016253.13	ENSMUST00000109075.8	2279	15	0	0	0	0	multi-exon	FALSE	canonical	3	502	junction_12	51.3083913254758	1112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATATTTTACTCATTTCTT	NA	False	NA	40	True	AATAAA	-21	NA	174257596	174269295	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174264998_174265168_174265300_174265775_174265942_174266398_174266534_174266906_174267047_174267705_174267821_174268109_174268206_174268281_174268423_174268609_174268740_174268823
transcript_5574.known	chr1	+	3717	2	FSM	ENSMUSG00000038949.9	ENSMUST00000144370.2	3717	2	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTAAAAAAAAATCCCATGA	NA	False	NA	NA	False	NA	NA	NA	179374063	179410501	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_179374182_179406902
transcript_5575.known	chr1	+	4709	11	FSM	ENSMUSG00000038949.9	ENSMUST00000040706.9	4709	11	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_8	8.09691299199886	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTCCGAGAATTTATTTG	NA	False	NA	NA	False	TTTAAA	-17	NA	179373934	179455043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_179374182_179406902_179407334_179420249_179420432_179429266_179429298_179432083_179432171_179432517_179432633_179433812_179433835_179434001_179434099_179437350_179438232_179450331_179450468_179452563
transcript_55751.known	chr2	+	600	5	FSM	ENSMUSG00000016253.13	ENSMUST00000129716.2	600	5	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	244.126376084191	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTAGGGAGAACGCTGGAC	NA	False	NA	NA	False	NA	NA	NA	174257672	174264465	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_174257828_174261819_174261939_174262116_174262227_174263502_174263613_174264359
transcript_55752.known	chr2	-	1441	6	FSM	ENSMUSG00000016256.11	ENSMUST00000016400.9	1441	6	0	0	0	0	multi-exon	FALSE	canonical	3	493	junction_4	13.5292276202302	4013	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTGTACTTTATTTACA	5329	False	NA	0	True	AGTAAA	-17	NA	174280832	174269285	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_174269776_174270370_174270537_174270848_174271000_174275280_174275461_174279957_174280122_174280542
transcript_5576.known	chr1	+	1948	12	FSM	ENSMUSG00000038936.14	ENSMUST00000040538.10	1948	12	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_9	16.3434218576322	446	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCCCCTTTTTTGGT	NA	False	NA	12	True	AATAAA	-19	NA	179495774	179514754	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_179496111_179498147_179498261_179503955_179504037_179505605_179505736_179506444_179506495_179507149_179507281_179508056_179508175_179508997_179509118_179509215_179509273_179511769_179511882_179513260_179513343_179514136
transcript_55760.known	chr2	-	421	3	FSM	ENSMUSG00000016252.8	ENSMUST00000016396.8	421	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1326.5	31647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTTTTGTTTCTGTTCTA	NA	False	NA	-4	True	AATAAA	-22	NA	174305898	174302864	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_174303015_174304292_174304423_174305757
transcript_55761.known	chr2	-	1697	2	FSM	ENSMUSG00000016252.8	ENSMUST00000149191.2	1697	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGGGTTTTGTTTCTGTT	NA	False	NA	-7	True	AATAAA	-19	NA	174305842	174302867	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_174303015_174304292
transcript_55769.known	chr2	-	1553	6	FSM	ENSMUSG00000016257.16	ENSMUST00000016401.15	1553	6	0	0	0	0	multi-exon	FALSE	canonical	3	812	junction_2	54.463198583998	2897	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGAGCAGCTCTTCCCAT	NA	False	NA	-4	True	AATAAA	-45	NA	174314874	174306859	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_174307730_174308518_174308622_174308732_174308804_174310090_174310181_174311129_174311299_174314624
transcript_55774.known	chr2	-	622	5	FSM	ENSMUSG00000016257.16	ENSMUST00000120822.2	622	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	371.758910451384	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGACTTTTGATCTAAA	NA	False	NA	NA	False	NA	NA	NA	174314727	174307486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_174307730_174308518_174308622_174308732_174308804_174310090_174310193_174314624
transcript_55780.known	chr2	-	355	3	FSM	ENSMUSG00000016257.16	ENSMUST00000141100.2	355	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGCTCAGCACAGAGTGG	NA	False	NA	NA	False	NA	NA	NA	174314724	174311173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_174311299_174312641_174312772_174314624
transcript_55801.known	chr2	+	919	4	FSM	ENSMUSG00000078906.10	ENSMUST00000109069.8	919	4	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_1	395.454450249611	143	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCACATACCTTTCTCTTT	NA	False	NA	NA	False	NA	NA	NA	174852033	174859405	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_174852115_174855220_174855276_174858430_174858558_174858749
transcript_55819.nnic	chr2	-	463	5	Fusion	ENSMUSG00000085608.2_ENSMUSG00000081949.4_ENSMUSG00000078905.9	novel	564	3	NA	NA	-107	-12	multi-exon	FALSE	canonical	0	0	junction_4	28.0044639298809	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCATGACTGTAATTCCTC	NA	False	NA	NA	False	NA	NA	NA	174951915	174865158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_-_174865271_174905392_174905454_174905660_174905788_174909492_174909546_174951805
transcript_55825.known	chr2	-	625	4	FSM	ENSMUSG00000078905.9	ENSMUST00000072895.10	625	4	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_2	18.263503375737	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAACCAAGGTGGTAATCC	NA	False	NA	NA	False	NA	NA	NA	174909556	174903341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_174903715_174905392_174905454_174905660_174905788_174909492
transcript_55827.nnic	chr2	-	461	3	Fusion	ENSMUSG00000078902.4_ENSMUSG00000078905.9	novel	564	3	NA	NA	-18	-134	multi-exon	FALSE	canonical	3	17	junction_1	9	37	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTTTGCAAGACATTC	NA	False	NA	NA	False	NA	NA	NA	175017682	174905232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_-_174905454_174974988_174975089_175017542
transcript_55829.nnic	chr2	+	3689	4	NNC	ENSMUSG00000080888.4	novel	2055	3	NA	NA	-8619	1483	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4.24264068711928	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCTTGGTCATGGTATC	NA	False	NA	NA	False	NA	NA	NA	174919674	174933194	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_174919826_174928293_174928422_174928631_174928693_174929845
transcript_55831.nnic	chr2	-	401	3	Fusion	ENSMUSG00000081949.4_ENSMUSG00000090093.9_ENSMUSG00000078902.4	novel	401	4	NA	NA	30	-1288	multi-exon	FALSE	canonical	0	0	junction_1	17.5	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGGTATGTAATTATACTT	NA	False	NA	NA	False	NA	NA	NA	175017634	174947534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_-_174947744_174974988_174975089_175017542
transcript_55834.nnic	chr2	-	451	4	Fusion	ENSMUSG00000085608.2_ENSMUSG00000090093.9	novel	703	3	NA	NA	-70	-12	multi-exon	FALSE	canonical	3	9	junction_1	24.8596057893121	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCATGACTGTAATTCCTC	NA	False	NA	NA	False	NA	NA	NA	174983875	174865158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_-_174865271_174974721_174974783_174974988_174975116_174983724
transcript_55836.nnic	chr2	-	483	3	Fusion	ENSMUSG00000090093.9_ENSMUSG00000078902.4_ENSMUSG00000078905.9	novel	564	3	NA	NA	-26	-147	multi-exon	FALSE	canonical	3	11	junction_2	3	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGATATGTAATTTTTGT	NA	False	NA	NA	False	NA	NA	NA	175017690	174905245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_-_174905454_174974988_174975116_175017542
transcript_55837.nnic	chr2	-	496	3	Fusion	ENSMUSG00000081949.4_ENSMUSG00000090093.9_ENSMUSG00000078902.4	novel	401	4	NA	NA	-26	-1276	multi-exon	FALSE	canonical	0	0	junction_1	5.5	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATACTTTGCCAGGCATTC	NA	False	NA	NA	False	NA	NA	NA	175017690	174947522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_-_174947744_174974988_174975116_175017542
transcript_55839.nnic	chr2	-	1143	3	Fusion	ENSMUSG00000090093.9_ENSMUSG00000078902.4	novel	703	3	NA	NA	7	420	multi-exon	FALSE	canonical	3	30	junction_1	2.5	40	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGTGAGTTCTTCCTGTT	NA	False	NA	NA	False	NA	NA	NA	175017657	174973854	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_-_174974783_174974988_174975089_175017542
transcript_55840.known	chr2	-	703	3	FSM	ENSMUSG00000090093.9	ENSMUST00000109059.8	703	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	19.5	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGTGGTAAAGCCTTAAC	NA	False	NA	NA	False	NA	NA	NA	174983792	174974274	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_174974783_174974988_174975116_174983724
transcript_55841.nnic	chr2	-	1203	3	Fusion	ENSMUSG00000090093.9_ENSMUSG00000078902.4	novel	703	3	NA	NA	-26	420	multi-exon	FALSE	canonical	3	11	junction_2	9.5	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGTGAGTTCTTCCTGTT	NA	False	NA	NA	False	NA	NA	NA	175017690	174973854	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_-_174974783_174974988_174975116_175017542
transcript_55842.known	chr2	-	1911	4	FSM	ENSMUSG00000090093.9	ENSMUST00000109060.8	1911	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	19.3964487013015	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTAAAGCCTTTGCAGG	NA	False	NA	NA	False	NA	NA	NA	174983805	174971920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_174973563_174974721_174974783_174974988_174975116_174983724
transcript_55844.nnic	chr2	-	464	3	Fusion	ENSMUSG00000078902.4_ENSMUSG00000078905.9	novel	564	3	NA	NA	-30	-143	multi-exon	FALSE	canonical	0	0	junction_1	19	30	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATGTAATTTTTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	175017694	174905241	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_-_174905454_175013640_175013741_175017542
transcript_55845.nnic	chr2	-	528	3	Fusion	ENSMUSG00000081949.4_ENSMUSG00000078902.4	novel	401	4	NA	NA	-30	-1221	multi-exon	FALSE	canonical	0	0	junction_1	19	23	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATATATATATATATATATA	NA	False	NA	NA	False	NA	NA	NA	175017694	174947467	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_-_174947744_175013640_175013741_175017542
transcript_55846.nnic	chr2	-	420	3	Fusion	ENSMUSG00000081949.4_ENSMUSG00000078902.4	novel	401	4	NA	NA	11	-1288	multi-exon	FALSE	canonical	0	0	junction_1	17.5	21	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGGTATGTAATTATACTT	NA	False	NA	NA	False	NA	NA	NA	175017653	174947534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_-_174947744_174974988_174975089_175017542
transcript_55847.nnic	chr2	-	461	3	Fusion	ENSMUSG00000090093.9_ENSMUSG00000078902.4	novel	703	3	NA	NA	-30	144	multi-exon	FALSE	canonical	0	0	junction_1	19	41	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGATATGTAATTATTGTT	NA	False	NA	NA	False	NA	NA	NA	175017694	174974573	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_-_174974783_175013640_175013741_175017542
transcript_55848.known	chr2	-	4516	4	FSM	ENSMUSG00000078902.4	ENSMUST00000109054.3	4516	4	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_1	16.3571255285137	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	-4	True	NA	NA	NA	175017664	175008047	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_175012254_175013387_175013449_175013640_175013768_175017542
transcript_55855.known	chr2	-	965	4	FSM	ENSMUSG00000078903.11	ENSMUST00000109055.2	965	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	81.8141525382715	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCCACATACCTTTCACT	NA	False	NA	NA	False	NA	NA	NA	175048692	175038734	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_175039399_175039599_175039727_175044851_175044907_175048573
transcript_55856.known	chr2	-	1854	5	FSM	ENSMUSG00000078903.11	ENSMUST00000109058.9	1854	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	82.2936814099357	742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTAAAGCCTTTGCAGG	NA	False	NA	NA	False	NA	NA	NA	175048710	175036706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_175038181_175039337_175039399_175039599_175039727_175044851_175044907_175048573
transcript_55857.known	chr2	+	624	1	FSM	ENSMUSG00000084323.5	ENSMUST00000121572.2	624	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	433	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCACTCGTAGTGTAATA	NA	False	NA	NA	False	NA	NA	NA	175112348	175112972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_175112300_175113000
transcript_55860.known	chr2	+	192	2	FSM	ENSMUSG00000078901.9	ENSMUST00000098998.4	192	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCTCTGCAAGCTGATG	NA	False	NA	NA	False	NA	NA	NA	175125090	175125487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_175125218_175125422
transcript_55864.known	chr2	-	4402	5	FSM	ENSMUSG00000078899.10	ENSMUST00000121393.9	4402	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	105.8828952192	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	175179990	175163747	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_175167842_175168998_175169060_175169264_175169392_175176415_175176471_175179925
transcript_55874.nic	chr2	-	905	4	ISM	ENSMUSG00000078899.10	ENSMUST00000121393.9	4402	5	-82	4736	-82	-1948	5prime_fragment	FALSE	canonical	3	21	junction_2	108.76988962433	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGAATTTTCACTTGTTA	NA	False	NA	NA	False	NA	NA	NA	175180072	175168483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_175169060_175169264_175169392_175176415_175176471_175179925
transcript_55875.nic	chr2	-	542	4	ISM	ENSMUSG00000078899.10	ENSMUST00000121393.9	4402	5	-82	5099	-82	-2311	5prime_fragment	FALSE	canonical	3	21	junction_2	108.76988962433	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATGTAACTGTTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	175180072	175168846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_175169060_175169264_175169392_175176415_175176471_175179925
transcript_55879.known	chr2	+	1272	3	FSM	ENSMUSG00000078898.10	ENSMUST00000131676.8	1272	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	13	244	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACTGTTCCCATTTCATG	NA	False	NA	NA	False	NA	NA	NA	175214228	175223579	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_175214367_175222239_175222367_175222572
transcript_55883.known	chr2	-	1198	4	FSM	ENSMUSG00000078897.11	ENSMUST00000152941.2	1198	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	107.953693776545	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTCTTCCTGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	175277575	175265685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_175266617_175266821_175266949_175273972_175274028_175277490
transcript_55884.known	chr2	+	1271	3	FSM	ENSMUSG00000078896.12	ENSMUST00000109042.10	1271	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	42.5	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTGTTCCCATTTCATT	NA	False	NA	NA	False	NA	NA	NA	175311777	175321130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_175311916_175319791_175319919_175320124
transcript_55886.nnic	chr2	+	502	5	NNC	ENSMUSG00000094475.8	novel	1497	4	NA	NA	-589274	-1194	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	116.363654119317	114	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	174846496	175444459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_174846644_175435718_175435774_175442797_175442925_175443129_175443191_175444347
transcript_55888.nnic	chr2	+	534	4	NNC	ENSMUSG00000094475.8	novel	1497	4	NA	NA	-589266	148	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	127.185778380376	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATGTAACTGTTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	174846504	175443342	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_174846644_175435718_175435774_175442797_175442925_175443129
transcript_55889.nnic	chr2	+	1032	4	NNC	ENSMUSG00000094475.8	novel	1497	4	NA	NA	-589401	511	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	127.185778380376	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGAATTTTCACTTGTTA	NA	False	NA	NA	False	NA	NA	NA	174846369	175443705	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_174846644_175435718_175435774_175442797_175442925_175443129
transcript_5589.known	chr1	-	1494	4	FSM	ENSMUSG00000026491.14	ENSMUST00000140489.2	1494	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	151.540973557209	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATGACAGGTAATTGATA	NA	False	NA	NA	False	AATAAA	-18	NA	179579974	179572901	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_179574086_179574744_179574822_179576121_179576256_179579875
transcript_55893.known	chr2	-	252	3	FSM	ENSMUSG00000095545.8	ENSMUST00000131041.2	252	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	10.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCTCTGCAAGCTGATG	NA	False	NA	NA	False	NA	NA	NA	175495439	175487108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_175487174_175487379_175487507_175495379
transcript_55898.nnic	chr2	+	506	5	NNC	ENSMUSG00000094932.8	novel	1497	4	NA	NA	-3666	-1194	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_4	106.376689175778	63	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	175529663	175542018	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_175529815_175533277_175533333_175540356_175540484_175540688_175540750_175541906
transcript_55901.nnic	chr2	+	546	4	NNC	ENSMUSG00000094932.8	novel	1497	4	NA	NA	-3666	148	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_2	111.283421945948	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATGTAACTGTTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	175529663	175540901	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_175529815_175533277_175533333_175540356_175540484_175540688
transcript_55905.known	chr2	-	624	1	FSM	ENSMUSG00000083481.5	ENSMUST00000118709.2	624	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	473	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCACTCGTAGTGTAATA	8779	False	NA	NA	False	NA	NA	NA	175597399	175596775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_175596800_175597400
transcript_5591.known	chr1	-	746	2	FSM	ENSMUSG00000026491.14	ENSMUST00000147137.2	746	2	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTCCTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	179631171	179626411	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_179626904_179630917
transcript_55911.known	chr2	+	1445	4	FSM	ENSMUSG00000078887.11	ENSMUST00000109011.8	1445	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	81.1432204329001	560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACATTAGATTGCTCTGT	NA	False	NA	NA	False	NA	NA	NA	175661011	175671449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_175661175_175664841_175664897_175670021_175670149_175670349
transcript_55912.known	chr2	+	599	6	FSM	ENSMUSG00000078887.11	ENSMUST00000147820.2	599	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	84.5846321739357	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTGTAACCAATGTGGTA	NA	False	NA	NA	False	NA	NA	NA	175661037	175671684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_175661175_175664841_175664897_175666200_175666303_175670021_175670149_175670349_175670411_175671567
transcript_55916.nnic	chr2	-	701	4	NNC	ENSMUSG00000085103.4	novel	474	3	NA	NA	-3867	82084	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	12.1197726417986	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTCTGGTTGTTTGAAATA	NA	False	NA	NA	False	TTTAAA	-7	NA	175863526	175775731	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_175776121_175859274_175859336_175859528_175859656_175863402
transcript_55924.nnic	chr2	-	460	5	NNC	ENSMUSG00000095648.8	novel	195	3	NA	NA	-3654	18697	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	57.3781317228088	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCATTTTGGTCATTTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	175895272	175864686	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_175864756_175886096_175886158_175886363_175886491_175891615_175891671_175895124
transcript_55925.nnic	chr2	-	4733	5	NNC	ENSMUSG00000095648.8	novel	1749	4	NA	NA	-3654	2784	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_3	46.0027173110459	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	175895272	175880599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_175884942_175886096_175886158_175886363_175886491_175891615_175891671_175895124
transcript_55928.nnic	chr2	-	517	5	NNC	ENSMUSG00000095648.8	novel	1749	4	NA	NA	-3654	1277	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_3	46.0027173110459	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATGTGGTAAGGACTTTA	NA	False	NA	NA	False	NA	NA	NA	175895272	175884815	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_175884942_175886096_175886158_175886363_175886491_175891615_175891671_175895124
transcript_5593.known	chr1	-	8506	36	FSM	ENSMUSG00000026491.14	ENSMUST00000027768.14	8506	36	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_19	31.9958415665383	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTGTCAAGTTAATAATTA	NA	False	NA	-1	True	AATAAA	-19	NA	179631245	179572458	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_179574094_179574744_179574822_179576121_179576256_179579875_179581638_179583013_179583220_179585499_179585595_179587826_179587927_179590109_179590528_179591034_179591239_179593442_179593636_179595859_179595968_179596553_179596705_179596873_179597025_179598153_179598286_179598363_179598509_179602896_179603085_179603572_179603720_179605067_179605125_179605264_179605389_179607168_179607263_179608420_179608526_179609207_179609349_179610511_179610602_179611654_179611746_179612572_179612702_179613634_179613697_179614259_179614442_179614532_179614666_179615753_179615905_179617213_179617299_179617863_179617981_179619910_179620119_179621207_179621389_179623241_179623496_179626775_179626904_179630917
transcript_55932.nnic	chr2	-	1432	4	NNC	ENSMUSG00000095648.8	novel	195	3	NA	NA	-3654	1037	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_2	52.563189485503	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTAGATTGCTCTGTTCAA	NA	False	NA	NA	False	NA	NA	NA	175895272	175885055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_175886158_175886363_175886491_175891615_175891671_175895124
transcript_55935.nnic	chr2	-	1341	4	NNC	ENSMUSG00000095648.8	novel	195	3	NA	NA	-3654	946	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_2	52.563189485503	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTTCCCATTTCATATA	NA	False	NA	NA	False	NA	NA	NA	175895272	175885146	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_175886158_175886363_175886491_175891615_175891671_175895124
transcript_55937.nnic	chr2	-	906	4	NNC	ENSMUSG00000095648.8	novel	195	3	NA	NA	-3654	511	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_2	52.563189485503	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGAATTTTCACTTGTTA	NA	False	NA	NA	False	NA	NA	NA	175895272	175885581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_175886158_175886363_175886491_175891615_175891671_175895124
transcript_55939.nnic	chr2	-	543	4	NNC	ENSMUSG00000095648.8	novel	195	3	NA	NA	-3654	148	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_2	52.563189485503	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATGTAACTGTTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	175895272	175885944	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_175886158_175886363_175886491_175891615_175891671_175895124
transcript_5594.known	chr1	-	2570	3	FSM	ENSMUSG00000026491.14	ENSMUST00000151734.2	2570	3	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_2	32.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTGTGTCTGGTAGATT	NA	False	NA	-7	True	AATAAA	-14	NA	179581145	179573655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_179574822_179576121_179576256_179579875
transcript_55941.known	chr2	+	2314	6	FSM	ENSMUSG00000078894.10	ENSMUST00000136719.2	2314	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	27.5288939116703	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGCTTCTTCGTCATGTT	3039	False	NA	NA	False	NA	NA	NA	175968365	175980514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_175968480_175971917_175971973_175973273_175973376_175977111_175977239_175977443_175977505_175978659
transcript_55944.known	chr2	+	3823	5	FSM	ENSMUSG00000078894.10	ENSMUST00000099009.9	3823	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	24.8432586429397	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGGTGGGATAGAC	3035	False	NA	NA	False	AATAAA	-25	NA	175968361	175982121	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_175968480_175971917_175971973_175977111_175977239_175977443_175977505_175978659
transcript_5595.known	chr1	-	460	1	FSM	ENSMUSG00000104418.2	ENSMUST00000193272.2	460	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTACACAAAGAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	179752976	179752516	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_179752500_179753000
transcript_55950.nnic	chr2	+	476	5	NNC	ENSMUSG00000078894.10	novel	3823	5	NA	NA	-26	-626	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	28.0846933399672	83	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTGTAACCAATGTGGTA	3009	False	NA	NA	False	NA	NA	NA	175968335	175978776	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_175968452_175971917_175971973_175977111_175977239_175977443_175977505_175978659
transcript_55953.nic	chr2	+	540	4	ISM	ENSMUSG00000078894.10	ENSMUST00000099009.9	3823	5	-33	4471	-33	142	5prime_fragment	FALSE	canonical	3	13	junction_2	10.9848380355227	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTATGTATGTAATTATTG	3002	False	NA	NA	False	NA	NA	NA	175968328	175977650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_175968480_175971917_175971973_175977111_175977239_175977443
transcript_55955.nnic	chr2	+	505	4	NNC	ENSMUSG00000078894.10	novel	3823	5	NA	NA	-26	142	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	14.5143607047182	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTATGTATGTAATTATTG	3009	False	NA	NA	False	NA	NA	NA	175968335	175977650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_175968452_175971917_175971973_175977111_175977239_175977443
transcript_55957.known	chr2	+	1127	3	FSM	ENSMUSG00000089951.9	ENSMUST00000127687.8	1127	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	45	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGAGTTCTTCCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	176115453	176124879	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_176115528_176123621_176123749_176123953
transcript_5596.known	chr1	-	4026	15	FSM	ENSMUSG00000026489.14	ENSMUST00000027766.13	4026	15	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	4.06390281902126	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAAGGTCATTTTGTTTT	3865	False	NA	NA	False	AATAAA	-16	NA	180023585	179992802	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_179995022_179995886_179995974_179996135_179996202_179996337_179996446_179996644_179996787_179996980_179997075_179997197_179997280_179997626_179997768_179997907_179997994_179999128_179999252_180001815_180001891_180006141_180006209_180006447_180006850_180009626_180009813_180023437
transcript_55964.nic	chr2	-	515	5	NIC	ENSMUSG00000078881.11	novel	1458	4	NA	NA	-46	158	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	106.190865897214	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	176178622	176166264	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_176166377_176167533_176167595_176167799_176167927_176174950_176175006_176178462
transcript_55968.known	chr2	-	1458	4	FSM	ENSMUSG00000078881.11	ENSMUST00000120959.8	1458	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	108.739239569818	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAATCAGTGTAAGAAAGAT	NA	False	NA	NA	False	NA	NA	NA	176178566	176166422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_176167595_176167799_176167927_176174950_176175006_176178462
transcript_55971.known	chr2	-	559	4	FSM	ENSMUSG00000078881.11	ENSMUST00000120521.2	559	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	121.546516015703	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATCAAGCCTAGTACAGC	NA	False	NA	NA	False	NA	NA	NA	176178576	176167303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_176167595_176167799_176167927_176174950_176175006_176178490
transcript_55975.nnic	chr2	+	1286	3	NNC	ENSMUSG00000095199.9	novel	461	4	NA	NA	-181225	-325	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	12.5	56	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGAGTTCTTCCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	176031567	176222040	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_176031801_176220781_176220909_176221114
transcript_55976.nnic	chr2	+	586	3	NNC	ENSMUSG00000095199.9	novel	461	4	NA	NA	-181151	-319	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_2	11.5	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAATTATTGTTTGCAAGAC	NA	False	NA	NA	False	NA	NA	NA	176031641	176221331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_176031884_176220781_176220909_176221114
transcript_55977.nnic	chr2	+	1372	3	Fusion	ENSMUSG00000095199.9_ENSMUSG00000089951.9	novel	1127	3	NA	NA	-14	-161	multi-exon	FALSE	canonical	3	25	junction_2	21.5	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTACATTAACATTAGATTG	NA	False	NA	NA	False	NA	NA	NA	176115372	176222204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_+_176115528_176220781_176220909_176221114
transcript_55978.known	chr2	+	753	3	FSM	ENSMUSG00000095199.9	ENSMUST00000238365.2	753	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	11	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACATCTCTATGAGGAAAAA	NA	False	NA	NA	False	NA	NA	NA	176212818	176221650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_176212909_176220781_176220909_176221114
transcript_5598.known	chr1	-	1997	11	FSM	ENSMUSG00000010609.16	ENSMUST00000111108.10	1997	11	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_10	6.79411510058521	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGGTGTTTGGCCCCTTT	NA	False	NA	2	True	AATAAA	-19	NA	180083865	180054568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_180055294_180056407_180056527_180056950_180057053_180057406_180057491_180061175_180061275_180062553_180062775_180063475_180063544_180066437_180066580_180068295_180068511_180073178_180073323_180083787
transcript_56002.nnic	chr2	-	485	4	Fusion	ENSMUSG00000074527.12_ENSMUSG00000078880.11	novel	1313	2	NA	NA	-137616	172	multi-exon	FALSE	canonical	3	15	junction_1	17.5689119374726	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATGTGGTAAGGACTTTA	NA	False	NA	NA	False	NA	NA	NA	176757218	176315814	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_-_176315941_176610459_176610521_176610725_176610853_176757047
transcript_56003.known	chr2	-	777	4	FSM	ENSMUSG00000078880.11	ENSMUST00000117267.2	777	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	118.72751249067	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCTTAATCTCTGTACC	NA	False	NA	NA	False	NA	NA	NA	176328137	176316640	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_176317159_176317363_176317491_176324514_176324570_176328060
transcript_56005.known	chr2	-	1458	4	FSM	ENSMUSG00000078880.11	ENSMUST00000119149.8	1458	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	105.749179140497	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAATCAGTGTAAGAAAGAT	NA	False	NA	NA	False	NA	NA	NA	176328136	176315986	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_176317159_176317363_176317491_176324514_176324570_176328032
transcript_56007.nnic	chr2	+	1072	7	NNC	ENSMUSG00000078878.10	novel	1497	4	NA	NA	-368479	74568	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	63.530613792792	76	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTCCAGAACGGTTTCCG	NA	False	NA	NA	False	NA	NA	NA	176031641	176488174	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_176031801_176403673_176403729_176410749_176410877_176411081_176411143_176412300_176412591_176412842_176412889_176487840
transcript_56013.known	chr2	+	1271	3	FSM	ENSMUSG00000078879.11	ENSMUST00000121956.8	1271	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	40	118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTGTTCCCATTTCATT	NA	False	NA	NA	False	NA	NA	NA	176362314	176371667	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_176362453_176370328_176370456_176370661
transcript_56014.known	chr2	+	1167	4	FSM	ENSMUSG00000078878.10	ENSMUST00000108980.9	1167	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	71.7696933871734	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTGTGCAAACACTGTGA	NA	False	NA	NA	False	NA	NA	NA	176400147	176411996	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_176400218_176403673_176403729_176410749_176410877_176411081
transcript_56016.known	chr2	+	1213	4	FSM	ENSMUSG00000078877.12	ENSMUST00000118012.9	1213	4	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	11.7284080571728	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGTGAGTTCTTCCTGT	NA	False	NA	NA	False	NA	NA	NA	176490404	176500411	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_176490512_176493973_176494029_176499154_176499282_176499487
transcript_56020.known	chr2	-	5159	6	FSM	ENSMUSG00000074527.12	ENSMUST00000134982.8	5159	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	14.1647449677006	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGCTTCCCCTGTGTCC	NA	False	NA	NA	False	AATAAA	-43	NA	176619587	176584301	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_176588932_176594470_176594654_176610459_176610521_176610725_176610853_176615991_176616047_176619484
transcript_56023.known	chr2	-	2314	6	FSM	ENSMUSG00000074527.12	ENSMUST00000125090.8	2314	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	32.7878026101171	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGCTTCTTCGTCATGTT	NA	False	NA	NA	False	NA	NA	NA	176619598	176607449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_176609305_176610459_176610521_176610725_176610853_176614588_176614691_176615991_176616047_176619484
transcript_56027.known	chr2	-	3823	5	FSM	ENSMUSG00000074527.12	ENSMUST00000099007.3	3823	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	30.886890422961	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGGTGGGATAGAC	NA	False	NA	NA	False	AATAAA	-25	NA	176619602	176605842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_176609305_176610459_176610521_176610725_176610853_176615991_176616047_176619484
transcript_56030.nnic	chr2	-	489	5	NNC	ENSMUSG00000074527.12	novel	3823	5	NA	NA	-44	142	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_4	34.8093019177346	62	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	176619646	176609192	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_176609305_176610459_176610521_176610725_176610853_176615991_176616047_176619512
transcript_56031.nic	chr2	-	635	5	ISM	ENSMUSG00000074527.12	ENSMUST00000125090.8	2314	6	-30	2864	-26	-979	5prime_fragment	FALSE	canonical	2	5	junction_3	12.871965661856	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTATGTATGTAATTATTG	NA	False	NA	NA	False	NA	NA	NA	176619628	176610313	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_176610521_176610725_176610853_176614588_176614691_176615991_176616047_176619484
transcript_56032.nnic	chr2	-	625	5	NNC	ENSMUSG00000074527.12	novel	2314	6	NA	NA	-44	-979	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_3	13.7204227340122	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTATGTATGTAATTATTG	NA	False	NA	NA	False	NA	NA	NA	176619646	176610313	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_176610521_176610725_176610853_176614588_176614691_176615991_176616047_176619512
transcript_56033.nic	chr2	-	533	4	ISM	ENSMUSG00000074527.12	ENSMUST00000099007.3	3823	5	-26	4471	-26	-979	5prime_fragment	FALSE	canonical	3	18	junction_2	8.37987005998436	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTATGTATGTAATTATTG	NA	False	NA	NA	False	NA	NA	NA	176619628	176610313	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_176610521_176610725_176610853_176615991_176616047_176619484
transcript_56034.nnic	chr2	-	523	4	NNC	ENSMUSG00000074527.12	novel	3823	5	NA	NA	-44	-979	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_3	13.5728487143349	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTATGTATGTAATTATTG	NA	False	NA	NA	False	NA	NA	NA	176619646	176610313	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_176610521_176610725_176610853_176615991_176616047_176619512
transcript_56035.nnic	chr2	-	1546	3	Fusion	ENSMUSG00000074527.12_ENSMUSG00000083111.2	novel	1313	2	NA	NA	-8675	-26	multi-exon	FALSE	non_canonical	0	0	junction_1	6.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCGATCAATATATTCAATG	NA	False	NA	NA	False	NA	NA	NA	176757306	176609360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_-_176610521_176748516_176748644_176757047
transcript_56037.nnic	chr2	-	586	3	NNC	ENSMUSG00000074527.12	novel	1313	2	NA	NA	-137697	-979	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	10	48	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTATGTATGTAATTATTG	NA	False	NA	NA	False	NA	NA	NA	176757299	176610313	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_176610521_176610725_176610853_176757047
transcript_56038.nnic	chr2	+	643	6	Fusion	ENSMUSG00000078872.10_ENSMUSG00000078875.11	novel	683	5	NA	NA	-57	33911	multi-exon	FALSE	non_canonical	0	0	junction_2	28.3125413906982	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCATGACTGTAATTCCTC	NA	False	NA	NA	False	NA	NA	NA	176692691	176813051	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_+_176692840_176696293_176696349_176697283_176697424_176701473_176701601_176776368_176776430_176812939
transcript_5604.known	chr1	-	1475	10	FSM	ENSMUSG00000010609.16	ENSMUST00000111104.2	1475	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	10.4963250476618	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAGAATAAAAACGTGT	NA	False	NA	NA	False	AAGAAA	-36	NA	180073322	180055009	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_180055294_180056407_180056527_180056950_180057050_180057406_180057491_180061175_180061275_180062553_180062775_180063475_180063544_180066437_180066580_180068295_180068511_180073178
transcript_56048.known	chr2	+	683	5	FSM	ENSMUSG00000078875.11	ENSMUST00000108975.9	683	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	57.6123901604507	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATAGAAAAAGTATGTTATA	NA	False	NA	NA	False	NA	NA	NA	176692748	176702777	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_176692840_176696293_176696349_176701473_176701601_176701806_176701868_176702428
transcript_56051.nic	chr2	+	503	5	NIC	ENSMUSG00000078875.11	novel	683	5	NA	NA	-57	357	combination_of_known_junctions	FALSE	canonical	3	46	junction_2	44.7178655572915	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	176692691	176703134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_176692840_176696293_176696349_176701473_176701601_176701806_176701868_176703022
transcript_56053.nnic	chr2	+	460	5	NNC	ENSMUSG00000078875.11	novel	683	5	NA	NA	-57	18697	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	57.9007771968563	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCATTTTGGTCATTTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	176692691	176723277	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_176692840_176696293_176696349_176701473_176701601_176701806_176701868_176723208
transcript_56056.nnic	chr2	+	503	5	Fusion	ENSMUSG00000078872.10_ENSMUSG00000078875.11	novel	683	5	NA	NA	-57	33911	multi-exon	FALSE	canonical	3	20	junction_4	17.3835410661925	71	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCATGACTGTAATTCCTC	NA	False	NA	NA	False	NA	NA	NA	176692691	176813051	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_+_176692840_176696293_176696349_176701473_176701601_176776368_176776430_176812939
transcript_56058.nnic	chr2	+	503	5	Fusion	ENSMUSG00000078872.10_ENSMUSG00000078875.11	novel	683	5	NA	NA	-57	33911	multi-exon	FALSE	canonical	0	0	junction_2	54.8839685154053	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCATGACTGTAATTCCTC	NA	False	NA	NA	False	NA	NA	NA	176692691	176813051	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_+_176692840_176696293_176696349_176776035_176776163_176776368_176776430_176812939
transcript_5606.known	chr1	+	3873	23	FSM	ENSMUSG00000026496.12	ENSMUST00000027777.12	3873	23	0	0	0	0	multi-exon	FALSE	canonical	3	1402	junction_6	226.960257925668	768	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCGTGTTGTGTGCCTCA	3147	False	NA	10	True	ATTAAA	-18	NA	180396493	180428819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180415923_180415993_180416214_180416348_180416962_180417159_180418782_180418912_180420412_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
transcript_56061.known	chr2	+	752	4	FSM	ENSMUSG00000078875.11	ENSMUST00000156844.8	752	4	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	49.7482551341139	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAATGGTTTTGTGGAAA	NA	False	NA	NA	False	NA	NA	NA	176692769	176702306	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_176692840_176696293_176696349_176701473_176701601_176701806
transcript_56075.nnic	chr2	+	444	4	Fusion	ENSMUSG00000078872.10_ENSMUSG00000078875.11	novel	752	4	NA	NA	-53	33911	multi-exon	FALSE	canonical	2	13	junction_1	21.6384431561566	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCATGACTGTAATTCCTC	NA	False	NA	NA	False	NA	NA	NA	176692695	176813051	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_+_176692840_176701473_176701601_176776368_176776430_176812939
transcript_56087.nnic	chr2	+	486	5	NNC	ENSMUSG00000078872.10	novel	973	4	NA	NA	-94	33911	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	52.578512721453	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCATGACTGTAATTCCTC	NA	False	NA	NA	False	NA	NA	NA	176766018	176813051	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_176766152_176772059_176772113_176776035_176776163_176776368_176776430_176812939
transcript_56096.nnic	chr2	-	672	4	NNC	ENSMUSG00000082765.4	novel	914	3	NA	NA	-1714	14560	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	39.8525058462103	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTAGGTCGTTTCTTTCTGG	NA	False	NA	1	True	AATAAA	-22	NA	176821216	176802695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_176803028_176819124_176819186_176819376_176819504_176821064
transcript_56097.nnic	chr2	-	671	4	NNC	ENSMUSG00000082765.4	novel	914	3	NA	NA	-144695	14560	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	26.2424592343528	134	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTAGGTCGTTTCTTTCTGG	NA	False	NA	1	True	AATAAA	-22	NA	176964197	176802695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_176803028_176819124_176819186_176819376_176819504_176964046
transcript_5610.nic	chr1	+	836	4	ISM	ENSMUSG00000026496.12	ENSMUST00000027777.12	3873	23	-116	21888	-111	205	5prime_fragment	FALSE	canonical	3	1772	junction_3	65.2805909559308	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTAGGTGGGATGTGGTTA	3031	False	NA	NA	False	AATGAA	-1	NA	180396377	180406931	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718
transcript_56102.nnic	chr2	-	308	3	Fusion	ENSMUSG00000078869.3_ENSMUSG00000082765.4	novel	914	3	NA	NA	-5338	-601	multi-exon	FALSE	canonical	3	65	junction_2	1	15	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATGTGGTAAAGCTTTTA	NA	False	NA	NA	False	NA	NA	NA	176964167	176817856	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_-_176817983_176958542_176958604_176964046
transcript_56104.nnic	chr2	+	463	3	Fusion	ENSMUSG00000082724.4_ENSMUSG00000078876.11_ENSMUSG00000078875.11	novel	192	2	NA	NA	-124	-3125	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGATATGTAATTATTGTT	1788	False	NA	NA	False	NA	NA	NA	176522808	176830999	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_+_176522936_176701473_176701601_176830790
transcript_56106.nnic	chr2	+	1195	3	Fusion	ENSMUSG00000078872.10_ENSMUSG00000082724.4	novel	948	4	NA	NA	-103	-2408	multi-exon	FALSE	canonical	2	17	junction_2	145	21	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGAGTTCTTCCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	176766009	176831716	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_+_176766152_176776035_176776163_176830790
transcript_56109.nnic	chr2	-	1450	4	NNC	ENSMUSG00000081590.2	novel	408	4	NA	NA	-148	4634	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2.16024689946929	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACACACAATCCCGGAAAC	NA	False	NA	NA	False	NA	NA	NA	176864811	176854448	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_176855560_176860529_176860591_176860783_176860911_176864660
transcript_56111.nnic	chr2	-	1400	3	NNC	ENSMUSG00000081590.2	novel	408	4	NA	NA	-145	4714	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATGAGTTGATTAACCAG	NA	False	NA	NA	False	NA	NA	NA	176864808	176854368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_176855560_176860529_176860591_176864660
transcript_56133.nnic	chr2	-	633	6	NNC	ENSMUSG00000078870.10	novel	1113	4	NA	NA	-71581	682	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	123.980643650531	126	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	176969795	176885959	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_-_176886072_176887228_176887290_176887494_176887622_176894619_176894675_176937155_176937186_176969547
transcript_56139.nic	chr2	-	506	5	NIC	ENSMUSG00000078870.10	novel	912	4	NA	NA	-69	682	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	120.131958695428	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	176898283	176885959	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_176886072_176887228_176887290_176887494_176887622_176894619_176894675_176898132
transcript_5614.known	chr1	+	3160	15	FSM	ENSMUSG00000058729.14	ENSMUST00000192561.6	3160	15	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	15.1320716307033	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTCTGAGAATCTTACT	NA	False	NA	9	True	AATAAA	-19	NA	180468714	180518252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_180468963_180475865_180475899_180478306_180478402_180479426_180479532_180486627_180486762_180489041_180489168_180493347_180493506_180494889_180495024_180496328_180496449_180496696_180496799_180501628_180501710_180508664_180508791_180515524_180515705_180515827_180515926_180516832
transcript_56152.known	chr2	-	912	4	FSM	ENSMUSG00000078870.10	ENSMUST00000108964.2	912	4	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_3	114.822568435923	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTGGGGCATTGAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	176898214	176886641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_176887290_176887494_176887622_176894619_176894675_176898132
transcript_56181.nnic	chr2	-	1335	4	Fusion	ENSMUSG00000083817.2_ENSMUSG00000078867.10	novel	2135	3	NA	NA	-46	-2152	multi-exon	FALSE	canonical	3	29	junction_2	139.104277432436	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTTCCCATTTCATGTT	NA	False	NA	83	True	NA	NA	NA	177090159	176919417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_-_176920428_176920629_176920757_177086489_177086545_177090016
transcript_56182.nnic	chr2	-	1237	4	Fusion	ENSMUSG00000083817.2_ENSMUSG00000078867.10	novel	2135	3	NA	NA	-46	-2250	multi-exon	FALSE	canonical	3	29	junction_2	139.104277432436	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGTGTGCAAAGACTTTGA	NA	False	NA	-15	True	NA	NA	NA	177090159	176919515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_-_176920428_176920629_176920757_177086489_177086545_177090016
transcript_56183.nnic	chr2	-	537	4	Fusion	ENSMUSG00000083817.2_ENSMUSG00000078867.10	novel	2135	3	NA	NA	-46	-2950	multi-exon	FALSE	canonical	3	29	junction_2	139.104277432436	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATGTAATTATTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	177090159	176920215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_-_176920428_176920629_176920757_177086489_177086545_177090016
transcript_5620.known	chr1	-	600	2	FSM	ENSMUSG00000103156.2	ENSMUST00000193209.2	600	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTCCAAGTACCACAGACC	NA	False	NA	NA	False	NA	NA	NA	180596221	180591061	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_180591486_180596045
transcript_56213.nnic	chr2	-	867	4	Fusion	ENSMUSG00000078870.10_ENSMUSG00000078867.10	novel	912	4	NA	NA	-161265	-63	multi-exon	TRUE	canonical	0	0	junction_1	35.8143360495021	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACTTGTTATTCTTCTTT	NA	False	NA	NA	False	NA	NA	NA	177251378	176886704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_-_176886907_177008534_177008918_177081219_177081347_177251223
transcript_56252.known	chr2	-	588	7	FSM	ENSMUSG00000078867.10	ENSMUST00000149689.2	588	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	128.500324253806	612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCATGACTGTAACCA	NA	False	NA	NA	False	NA	NA	NA	177090113	177079693	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_177079803_177080953_177081015_177081219_177081347_177081614_177081652_177085086_177085189_177086489_177086545_177090016
transcript_56253.known	chr2	-	1415	4	FSM	ENSMUSG00000078867.10	ENSMUST00000108955.2	1415	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_2	139.800651723167	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTCATATAGATAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	177090112	177079877	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_177081015_177081219_177081347_177086489_177086545_177090016
transcript_56259.nnic	chr2	+	573	4	NNC	ENSMUSG00000078866.11	novel	794	4	NA	NA	-43	13662	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	36.6878726556883	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTGAAATGATCTGAGCAG	NA	False	NA	NA	False	NA	NA	NA	177156482	177183584	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_177156642_177165078_177165206_177165410_177165472_177183358
transcript_56262.nic	chr2	+	1390	3	ISM	ENSMUSG00000078866.11	ENSMUST00000108952.4	1569	4	-156	1482	-43	-1482	5prime_fragment	FALSE	canonical	3	64	junction_2	12	153	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTTTGAATGAAGCCAAT	NA	False	NA	NA	False	NA	NA	NA	177156482	177166514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_177156642_177165078_177165206_177165410
transcript_56263.nnic	chr2	+	455	3	NNC	ENSMUSG00000078866.11	novel	794	4	NA	NA	-22	-2368	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_1	26	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTATTGTTTGCAAGACT	NA	False	NA	NA	False	NA	NA	NA	177156503	177165628	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_177156614_177165078_177165206_177165410
transcript_56275.nnic	chr2	+	516	5	Fusion	ENSMUSG00000078866.11_ENSMUSG00000094786.2	novel	794	4	NA	NA	-45	-304	multi-exon	FALSE	canonical	3	142	junction_1	41.6833300013327	224	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	17	True	NA	NA	NA	177156480	177200358	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_+_177156642_177193535_177193591_177198701_177198829_177199035_177199097_177200246
transcript_56328.known	chr2	-	531	4	FSM	ENSMUSG00000078865.9	ENSMUST00000108943.2	531	4	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_3	396.148400925153	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTAACAGATATGTTACTG	2337	False	NA	NA	False	NA	NA	NA	177270003	177263019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_177263288_177263479_177263607_177266761_177266817_177269922
transcript_5633.known	chr1	-	724	5	FSM	ENSMUSG00000060743.13	ENSMUST00000162814.8	724	5	0	0	0	0	multi-exon	TRUE	canonical	3	3	junction_4	1106.03240797908	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGTTATCAGTAGTTC	NA	False	NA	NA	False	NA	NA	NA	180641508	180630588	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_180630771_180637681_180637836_180639363_180639515_180641035_180641113_180641348
transcript_56348.known	chr2	-	310	3	FSM	ENSMUSG00000095362.8	ENSMUST00000150650.2	310	3	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_1	213.5	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAAAAATTCCTATGAAGA	NA	False	NA	NA	False	NA	NA	NA	177482129	177476021	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_177476105_177476312_177476440_177482029
transcript_56349.known	chr2	-	1576	4	FSM	ENSMUSG00000095362.8	ENSMUST00000108939.9	1576	4	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_1	217.946476609893	895	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTAAAGCCTTTGCAGG	NA	False	NA	NA	False	NA	NA	NA	177482111	177473583	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_177474890_177476043_177476105_177476312_177476440_177482029
transcript_56350.known	chr2	+	627	1	FSM	ENSMUSG00000082901.2	ENSMUST00000122418.2	627	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	207	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCACTCGTAGTGTAATA	NA	False	NA	NA	False	NA	NA	NA	177534430	177535057	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_177534400_177535100
transcript_56366.nnic	chr2	-	1044	4	NIC	ENSMUSG00000074529.11	novel	561	3	NA	NA	-116	297	combination_of_known_splicesites	FALSE	canonical	3	8	junction_2	2.49443825784929	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGACCCTACAGTTACTAC	NA	False	NA	NA	False	AATAAA	-34	NA	177567522	177544835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_177545521_177563227_177563289_177563481_177563609_177567351
transcript_56368.known	chr2	+	1451	3	FSM	ENSMUSG00000074521.10	ENSMUST00000108935.8	1451	3	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	14.5	648	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATAATCAATGCGAGAACA	NA	False	NA	NA	False	NA	NA	NA	177538888	177547577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_177539047_177546077_177546205_177546411
transcript_56371.known	chr2	-	561	3	FSM	ENSMUSG00000074529.11	ENSMUST00000108934.9	561	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	2	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTACCCGGTTCATTCTG	NA	False	NA	NA	False	NA	NA	NA	177567397	177545132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_177545521_177563481_177563609_177567351
transcript_56373.nnic	chr2	-	897	3	NIC	ENSMUSG00000074529.11	novel	561	3	NA	NA	-96	297	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	4	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGACCCTACAGTTACTAC	NA	False	NA	NA	False	AATAAA	-34	NA	177567502	177544835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_177545521_177563227_177563289_177567351
transcript_56382.known	chr2	-	1807	5	FSM	ENSMUSG00000078862.11	ENSMUST00000108930.9	1807	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	8.13557004763649	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTAAAGCCTTTGCAGG	NA	False	NA	NA	False	NA	NA	NA	177599090	177587329	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_177588804_177589962_177590024_177590229_177590357_177595474_177595530_177599000
transcript_56388.known	chr2	-	767	4	FSM	ENSMUSG00000078862.11	ENSMUST00000108928.2	767	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	8.5764535535124	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTCAGCTGTGTGAATA	NA	False	NA	NA	False	NA	NA	NA	177599032	177589470	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_177590024_177590229_177590357_177595474_177595530_177599000
transcript_56396.nnic	chr2	-	543	3	Fusion	ENSMUSG00000095362.8_ENSMUSG00000078862.11	novel	310	3	NA	NA	-72	171	multi-exon	FALSE	canonical	3	80	junction_1	5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAGATATAATGGCTTAA	NA	False	NA	NA	False	NA	NA	NA	177599162	177475850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr2_-_177476105_177590229_177590357_177599000
transcript_56403.known	chr2	+	1413	4	FSM	ENSMUSG00000074519.12	ENSMUST00000108926.3	1413	4	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_3	11.2644968324772	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTAAACCCTTTGCAGG	NA	False	NA	NA	False	NA	NA	NA	177665171	177675815	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_177665175_177673047_177673175_177673382_177673444_177674593
transcript_56404.nnic	chr2	+	1908	4	NNC	ENSMUSG00000074519.12	novel	1413	4	NA	NA	-53	19286	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	14.7648230602334	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTAAGAATCTAAAGAAATT	NA	False	NA	NA	False	NA	NA	NA	177665023	177695101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_177665175_177673047_177673175_177673382_177673444_177693532
transcript_56407.known	chr2	+	923	3	FSM	ENSMUSG00000074519.12	ENSMUST00000108925.10	923	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	10.5	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGGATATGCAGTATAACAT	NA	False	NA	NA	False	NA	NA	NA	177665076	177674080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_177665175_177673047_177673175_177673382
transcript_56408.nnic	chr2	+	1144	3	NNC	ENSMUSG00000074519.12	novel	923	3	NA	NA	-25	224	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	6	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTTGAGTTCTTCCTTTT	NA	False	NA	NA	False	NA	NA	NA	177665051	177674304	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_177665147_177673047_177673175_177673382
transcript_56411.known	chr2	-	1372	3	FSM	ENSMUSG00000078861.9	ENSMUST00000108923.2	1372	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	29	861	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAATTTTAAAAGAATTCA	NA	False	NA	-14	True	NA	NA	NA	177720269	177710282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_177711409_177711615_177711743_177720150
transcript_56412.known	chr2	-	1572	2	FSM	ENSMUSG00000078861.9	ENSMUST00000123265.2	1572	2	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	0	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTCATACAGATAAAAAGA	NA	False	NA	0	True	NA	NA	NA	177720248	177710268	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_177711743_177720150
transcript_56413.known	chr2	+	2656	13	FSM	ENSMUSG00000027525.19	ENSMUST00000108916.8	2656	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.70579079087156	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGGGTTTTTTTGTTGTTT	1698	False	NA	NA	False	AATAAA	-18	NA	177760971	177978284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_177761096_177897905_177898068_177901970_177902049_177911109_177911293_177920689_177920900_177924802_177924978_177925652_177925901_177944477_177944632_177969930_177969987_177973372_177973435_177974614_177974756_177975843_177975921_177977298
transcript_56417.known	chr2	+	737	3	FSM	ENSMUSG00000039138.2	ENSMUST00000041998.2	737	3	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	6	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCCTTGGTAATGACCCT	NA	False	NA	7	True	AATAAA	-22	NA	179056728	179058675	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_179056894_179057552_179057714_179058264
transcript_56418.nnic	chr2	+	637	3	NNC	ENSMUSG00000039138.2	novel	737	3	NA	NA	-46	1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	32	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTTGGTAATGACCCTT	NA	False	NA	8	True	AATAAA	-23	NA	179056682	179058676	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_179056894_179057552_179057714_179058411
transcript_56419.nnic	chr2	+	1762	3	NNC	ENSMUSG00000039138.2	novel	737	3	NA	NA	-46	2040	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	26.5	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAAAACAAAAAC	NA	False	NA	NA	False	NA	NA	NA	179056682	179060715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_179056894_179057552_179057714_179059325
transcript_56421.nnic	chr2	+	910	3	NNC	ENSMUSG00000039138.2	novel	737	3	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	20.5	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCCTTGGTAATGACCCT	NA	False	NA	7	True	AATAAA	-22	NA	179056715	179058675	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_179056894_179057392_179057714_179058264
transcript_56426.known	chr2	-	4380	15	FSM	ENSMUSG00000039117.17	ENSMUST00000227325.2	4380	15	0	0	0	0	multi-exon	TRUE	canonical	3	58	junction_8	16.8935744335785	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCACGCCTGCTTTTCC	NA	False	NA	0	True	ATTAAA	-17	NA	179618439	179553944	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_179555400_179562944_179563065_179563703_179563761_179564746_179564873_179565771_179565903_179566209_179566380_179568008_179568124_179571069_179571218_179573808_179574019_179574755_179574846_179576821_179576945_179577684_179577805_179580203_179580324_179581586_179581748_179617205
transcript_56427.known	chr2	+	1905	2	FSM	ENSMUSG00000085704.2	ENSMUST00000150145.2	1905	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	179618645	179620806	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_179618986_179619241
transcript_56434.known	chr2	-	914	7	FSM	ENSMUSG00000027566.16	ENSMUST00000029082.9	914	7	0	0	0	0	multi-exon	FALSE	canonical	3	3926	junction_1	568.041078326794	16970	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGATGAGAACCTGTC	NA	False	NA	-12	True	AATAAA	-17	NA	179684226	179678166	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_179678367_179678730_179678794_179679175_179679296_179679857_179679981_179680517_179680643_179681145_179681273_179684070
transcript_56435.known	chr2	-	1157	7	FSM	ENSMUSG00000027566.16	ENSMUST00000129529.9	1157	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1848.62763662369	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGATGAGAACCTGTC	NA	False	NA	-12	True	AATAAA	-17	NA	179684203	179678166	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_179678633_179678730_179678794_179679175_179679296_179679857_179679981_179680517_179680643_179681145_179681273_179684070
transcript_56441.nic	chr2	+	1729	10	NIC	ENSMUSG00000039069.20	novel	1730	10	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	103	junction_3	39.9749921826134	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTCTGTGTCTTTA	NA	False	NA	NA	False	AATATA	-1	NA	179712355	179727695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_179712409_179713586_179713680_179714932_179715027_179719796_179719936_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
transcript_56442.known	chr2	+	1730	10	FSM	ENSMUSG00000039069.20	ENSMUST00000184862.8	1730	10	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_8	58.7703208880465	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTCTGTGTCTTTA	NA	False	NA	NA	False	AATATA	-1	NA	179712384	179727695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_179712409_179713586_179713680_179714932_179715027_179719796_179719936_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726106_179726243_179726383_179727172
transcript_5645.known	chr1	-	481	4	FSM	ENSMUSG00000060743.13	ENSMUST00000159789.2	481	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	1244.59480242456	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTATGCCAAAAGATATCCA	NA	False	NA	NA	False	NA	NA	NA	180641099	180630695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_180630771_180637681_180637836_180639363_180639552_180641035
transcript_56452.nnic	chr2	+	1635	9	NIC	ENSMUSG00000039069.20	novel	1730	10	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	3	49	junction_2	53.7558136390847	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTCTGTGTCTTTA	NA	False	NA	NA	False	AATATA	-1	NA	179712355	179727695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_179712409_179713586_179713680_179719796_179719936_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
transcript_56463.nic	chr2	+	1496	8	NIC	ENSMUSG00000039069.20	novel	1730	10	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_2	60.3080527333605	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTCTGTGTCTTTA	NA	False	NA	NA	False	AATATA	-1	NA	179712355	179727695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_179712409_179713586_179713680_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
transcript_5647.known	chr1	-	807	3	FSM	ENSMUSG00000060743.13	ENSMUST00000159441.8	807	3	0	0	0	0	multi-exon	FALSE	canonical	3	2337	junction_2	191	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	180641168	180637312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_180637836_180639363_180639515_180641035
transcript_56475.known	chr2	+	1444	7	FSM	ENSMUSG00000039069.20	ENSMUST00000108901.8	1444	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	63.2077702677623	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTCTGTGTCTTTA	NA	False	NA	NA	False	AATATA	-1	NA	179713585	179727695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_179713680_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
transcript_56478.known	chr2	+	2805	14	FSM	ENSMUSG00000039050.9	ENSMUST00000040668.9	2805	14	0	0	0	0	multi-exon	TRUE	canonical	3	166	junction_6	20.3809866146027	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGGGTTGAAGGTTTGA	NA	False	NA	10	True	ATTAAA	-16	NA	179761098	179804473	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_179761263_179778771_179778906_179780005_179780151_179782897_179782974_179786624_179786760_179786881_179786980_179790218_179790402_179791971_179792080_179792808_179792899_179794991_179795116_179797059_179797201_179799621_179799746_179800821_179800913_179803281
transcript_5648.known	chr1	-	888	4	FSM	ENSMUSG00000060743.13	ENSMUST00000081026.11	888	4	0	0	0	0	multi-exon	TRUE	canonical	1	55	junction_1	1176.16816635869	3572	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACACAGTAGATTCCATC	NA	False	NA	NA	False	AGTAAA	-42	NA	180641112	180630261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_180630768_180637681_180637836_180639363_180639515_180641035
transcript_56482.known	chr2	+	1688	13	FSM	ENSMUSG00000039050.9	ENSMUST00000142376.2	1688	13	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_6	20.4306074853936	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCACATATGTTGCTTAAAA	NA	False	NA	NA	False	AATGAA	-18	NA	179761196	179801085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_179761263_179778771_179778906_179780005_179780151_179782897_179782974_179786624_179786760_179786881_179786980_179790218_179790402_179791971_179792080_179792808_179792899_179794991_179795116_179797059_179797201_179799621_179799746_179800821
transcript_56486.known	chr2	+	1535	10	FSM	ENSMUSG00000039041.16	ENSMUST00000061437.5	1535	10	0	0	0	0	multi-exon	FALSE	canonical	3	1931	junction_6	170.679108342794	3426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTATGGTCTGGGCCTGTGTT	NA	False	NA	2	True	AATAAA	-22	NA	179813277	179818079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_179813482_179813826_179814041_179814648_179814766_179815702_179815827_179816101_179816189_179816657_179816740_179816952_179817186_179817390_179817549_179817646_179817750_179817866
transcript_5651.known	chr1	+	3213	7	FSM	ENSMUSG00000038806.8	ENSMUST00000038091.8	3213	7	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_5	43.0761599444003	1870	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTTGGAGTTTTTTGTT	NA	False	NA	22	True	AATAAA	-22	NA	180678691	180695678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_180678858_180683367_180683486_180685687_180685800_180687465_180687636_180688662_180688784_180689922_180690407_180693636
transcript_5652.known	chr1	+	2473	4	FSM	ENSMUSG00000066652.6	ENSMUST00000085797.6	2473	4	0	0	0	0	multi-exon	FALSE	canonical	3	1148	junction_3	71.1071179434395	1794	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAGAGAGCGAGTCATCGA	NA	False	NA	21	True	AATAAA	-19	NA	180720672	180726668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_180720999_180721699_180721947_180722160_180722407_180725014
transcript_56533.known	chr2	+	713	3	FSM	ENSMUSG00000039041.16	ENSMUST00000152850.2	713	3	0	0	0	0	multi-exon	FALSE	canonical	3	2461	junction_2	6	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTATGGTCTGGGCCTG	NA	False	NA	-2	True	AATAAA	-18	NA	179817147	179818075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_179817549_179817646_179817750_179817866
transcript_56534.known	chr2	-	11388	79	FSM	ENSMUSG00000015647.10	ENSMUST00000015791.6	11388	79	0	0	0	0	multi-exon	TRUE	canonical	2	61	junction_68	85.5106215839985	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAGTGTGTTGATTTATA	NA	False	NA	-4	True	ATTAAA	-14	NA	179867652	179818165	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_179818558_179818680_179818801_179818895_179818987_179819066_179819201_179819283_179819438_179819527_179819693_179819801_179819998_179820069_179820216_179820307_179820423_179820513_179820685_179820802_179820934_179821044_179821322_179821398_179821548_179821628_179821752_179821866_179822030_179822102_179822237_179822401_179822556_179822634_179822772_179822885_179823063_179823142_179823292_179823364_179823545_179824150_179824262_179824559_179824663_179824756_179824899_179825112_179825268_179825410_179825528_179825810_179826008_179826193_179826365_179827121_179827234_179827415_179827527_179827606_179827759_179828354_179828505_179828593_179828775_179828968_179829070_179829338_179829554_179829651_179829733_179830057_179830186_179830359_179830474_179831125_179831357_179831952_179832037_179832122_179832225_179832432_179832595_179832697_179832839_179833020_179833166_179833343_179833549_179833886_179834099_179834181_179834298_179834655_179834796_179835196_179835324_179835484_179835687_179835767_179835866_179836282_179836392_179836467_179836629_179836938_179837093_179837164_179837272_179837347_179837491_179837673_179837813_179837960_179838118_179838276_179838377_179838828_179838935_179839018_179839069_179839165_179839272_179839509_179839563_179840053_179840192_179840267_179840403_179840488_179840624_179840722_179840861_179840942_179841084_179843250_179843314_179843513_179843649_179843771_179843863_179843953_179844073_179844184_179844301_179848517_179848616_179848725_179848897_179848979_179849099_179850046_179850165_179863018_179863172_179867283
transcript_5654.known	chr1	+	1580	7	FSM	ENSMUSG00000026520.9	ENSMUST00000027802.9	1580	7	0	0	0	0	multi-exon	FALSE	canonical	3	1025	junction_3	51.6120679255884	2963	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTAGTCTCACTGTGTAG	16	False	NA	32	True	NA	NA	NA	180731857	180735653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_180732096_180732308_180732380_180733438_180733619_180733727_180733950_180734159_180734253_180734354_180734519_180735041
transcript_5655.known	chr1	+	2717	5	FSM	ENSMUSG00000026520.9	ENSMUST00000194253.2	2717	5	0	0	0	0	multi-exon	FALSE	canonical	3	1107	junction_1	27.6450718935582	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTAGTCTCACTGTGTA	46	False	NA	31	True	NA	NA	NA	180731887	180735652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_180732096_180732308_180733950_180734159_180734253_180734354_180734519_180735041
transcript_56551.known	chr2	+	394	6	FSM	ENSMUSG00000039001.13	ENSMUST00000059080.7	394	6	0	0	0	0	multi-exon	FALSE	canonical	3	3954	junction_5	1417.02976680097	195364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTTTTGCTGTTTTTAC	NA	False	NA	26	True	AATAAA	-27	NA	179899169	179900238	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_179899241_179899413_179899477_179899580_179899645_179899778_179899851_179900022_179900079_179900170
transcript_56552.known	chr2	+	481	5	FSM	ENSMUSG00000039001.13	ENSMUST00000148629.2	481	5	0	0	0	0	multi-exon	FALSE	canonical	3	5195	junction_1	969.972422288386	3252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCTGCTTTTGCTGTTTT	NA	False	NA	23	True	AATAAA	-24	NA	179899171	179900235	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_179899241_179899413_179899477_179899580_179899645_179899778_179899851_179900022
transcript_56554.known	chr2	+	3002	13	FSM	ENSMUSG00000038963.16	ENSMUST00000139902.8	3002	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	23.5743504682526	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAATGATCCTTGTGTG	NA	False	NA	3	True	AATATA	-12	NA	180098126	180116638	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_180098167_180105733_180106622_180107389_180107481_180107997_180108101_180108850_180108973_180109359_180109472_180112896_180113052_180113846_180114043_180114197_180114364_180114453_180114627_180114895_180114961_180115306_180115456_180115896
transcript_56556.known	chr2	+	3010	12	FSM	ENSMUSG00000038963.16	ENSMUST00000038259.13	3010	12	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	7.21568539381252	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTATGTCTAAGCGTCTG	NA	False	NA	25	True	AATATA	-34	NA	180098037	180116660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_180098167_180105733_180106622_180107389_180107481_180108850_180108973_180109359_180109472_180112896_180113052_180113846_180114043_180114197_180114364_180114453_180114627_180114895_180114961_180115306_180115456_180115896
transcript_5656.known	chr1	+	1620	4	FSM	ENSMUSG00000038793.9	ENSMUST00000037361.9	1620	4	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_2	33.0790299468141	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTTTTTGTTTCCTTATT	NA	False	NA	8	True	AATAAA	-17	NA	180762586	180765965	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_180762925_180764111_180764359_180764573_180764820_180765176
transcript_56560.known	chr2	+	1510	5	FSM	ENSMUSG00000027569.16	ENSMUST00000029085.9	1510	5	0	0	0	0	multi-exon	TRUE	canonical	3	47	junction_3	10.4253297309965	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACTAAAAAAAAAAAAAACCT	NA	False	NA	NA	False	ATTAAA	-3	NA	180224504	180228080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_180224749_180225193_180225316_180226198_180226281_180226589_180226665_180227093
transcript_56563.known	chr2	+	1825	4	FSM	ENSMUSG00000027569.16	ENSMUST00000150757.8	1825	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	3.55902608401044	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATCTTGGAAGTTGTATG	NA	False	NA	NA	False	ATTAAA	-20	NA	180224515	180228097	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_180224749_180225193_180225316_180226198_180226665_180227093
transcript_56565.known	chr2	+	2673	3	FSM	ENSMUSG00000027569.16	ENSMUST00000149969.2	2673	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATCTTGGAAGTTGTATG	NA	False	NA	NA	False	ATTAAA	-20	NA	180224550	180228097	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_180224749_180225193_180226665_180227093
transcript_56566.known	chr2	+	1488	4	FSM	ENSMUSG00000027569.16	ENSMUST00000123609.8	1488	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	32.8261413442938	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATCTTGGAAGTTGTATG	NA	False	NA	NA	False	ATTAAA	-20	NA	180224524	180228097	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_180224749_180226198_180226281_180226486_180226665_180227093
transcript_56567.known	chr2	+	2449	7	FSM	ENSMUSG00000049401.11	ENSMUST00000029087.4	2449	7	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_6	11.4370256428652	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGGCCGTGTTCTGTTTG	NA	False	NA	22	True	AATAAA	-22	NA	180231037	180237629	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_180231415_180232779_180232849_180233409_180233489_180234219_180234299_180234896_180234964_180235362_180235512_180236000
transcript_5657.nnic	chr1	+	1605	4	NNC	ENSMUSG00000038793.9	novel	1620	4	NA	NA	-160	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	119.074206554848	147	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTTTTTGTTTCCTTATT	NA	False	NA	8	True	AATAAA	-17	NA	180762426	180765965	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_180762925_180764111_180764359_180764748_180764820_180765176
transcript_56571.known	chr2	+	2846	32	FSM	ENSMUSG00000027570.16	ENSMUST00000103059.2	2846	32	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	6.14327716438208	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTTAAGAACAATTTACCT	4871	False	NA	NA	False	AATAAA	-17	NA	180240014	180263978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_180240119_180240658_180240728_180241837_180241874_180242314_180242387_180243374_180243429_180244434_180244471_180244894_180244919_180245149_180245204_180245541_180245596_180245926_180245969_180247010_180247068_180247519_180247574_180248267_180248322_180248600_180248655_180248875_180248930_180249419_180249474_180250224_180250279_180251118_180251173_180251273_180251328_180251848_180251894_180251982_180252037_180252452_180252507_180253052_180253107_180253221_180253294_180254746_180254783_180255939_180255985_180257080_180257114_180257269_180257417_180257595_180257651_180258173_180258357_180261485_180261564_180263022
transcript_56575.nic	chr2	+	2175	22	ISM	ENSMUSG00000027570.16	ENSMUST00000103059.2	2846	32	6738	384	1775	199	3prime_fragment	FALSE	canonical	2	8	junction_11	3.68363421063118	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTAGTACTGGTTATAGTG	NA	False	NA	NA	False	AATAAA	-20	NA	180246752	180263594	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_+_180247068_180247519_180247574_180248267_180248322_180248600_180248655_180248875_180248930_180249419_180249474_180250224_180250279_180251118_180251173_180251273_180251328_180251848_180251894_180251982_180252037_180252452_180252507_180253052_180253107_180253221_180253294_180254746_180254783_180255939_180255985_180257080_180257114_180257269_180257417_180257595_180257651_180258173_180258357_180261485_180261564_180263022
transcript_56576.known	chr2	-	2225	6	FSM	ENSMUSG00000038932.14	ENSMUST00000037877.11	2225	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	24.9591666527551	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTCCCAGTGAGTCGCTTT	5369	False	NA	NA	False	AATAAA	-19	NA	180284501	180263748	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_180264508_180277046_180277189_180280196_180280441_180282093_180282257_180282673_180282858_180283768
transcript_56578.known	chr2	-	4613	6	FSM	ENSMUSG00000038914.16	ENSMUST00000103055.8	4613	6	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_5	13.3626344707921	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTATCCTTCTGTGT	NA	False	NA	-7	True	TTTAAA	-31	NA	180351792	180322850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_180325822_180326756_180326970_180329268_180329591_180330616_180331449_180333656_180333842_180351702
transcript_5658.nnic	chr1	+	695	3	NNC	ENSMUSG00000038793.9	novel	583	2	NA	NA	-14140	-894	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGTGTGTACCAGACGGG	NA	False	NA	NA	False	NA	NA	NA	180748446	180764481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_180748656_180750493_180750651_180764152
transcript_56581.known	chr2	+	1655	5	FSM	ENSMUSG00000027573.12	ENSMUST00000029090.9	1655	5	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_3	7.56224173112709	383	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGGCTTCTAAAAAGTTCT	NA	False	NA	18	True	AATAAA	-29	NA	180351909	180360526	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_180352144_180354983_180355114_180356482_180356680_180358651_180358850_180359630
transcript_56591.nic	chr2	+	2219	13	NIC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	-14	0	combination_of_known_junctions	TRUE	canonical	3	39	junction_2	51.5985437994351	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTTGTTTTATTCAATA	NA	False	NA	29	True	ATTAAA	-14	NA	180367041	180384073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_180367245_180373672_180373801_180374225_180374366_180375509_180375610_180377635_180377767_180378479_180378577_180378799_180378897_180379384_180379473_180380201_180380237_180381611_180381728_180382318_180382375_180382505_180382536_180383075
transcript_56593.known	chr2	+	2275	13	FSM	ENSMUSG00000023393.16	ENSMUST00000094218.4	2275	13	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_2	30.6879455161143	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTTGTTTTATTCAATA	NA	False	NA	29	True	ATTAAA	-14	NA	180367055	180384073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_180367245_180373672_180373871_180374225_180374366_180375509_180375610_180377635_180377767_180378479_180378577_180378799_180378897_180379384_180379473_180380201_180380237_180381611_180381728_180382318_180382375_180382505_180382536_180383075
transcript_56598.nnic	chr2	+	2193	12	NIC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	47	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_8	63.6142818831128	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTTGTTTTATTCAATA	NA	False	NA	29	True	ATTAAA	-14	NA	180367102	180384073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_180367245_180373672_180373871_180374225_180374366_180375509_180375610_180377635_180377767_180378479_180378577_180378799_180378897_180379384_180379473_180381611_180381728_180382318_180382375_180382505_180382536_180383075
transcript_5660.nnic	chr1	+	1973	10	NNC	ENSMUSG00000026519.17	novel	3306	23	NA	NA	5158	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	15.1836494255019	14	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCTGCCTCTCATGCTT	NA	False	NA	6	True	AATAAA	-22	NA	180792789	180802668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_180792955_180793104_180793212_180793308_180793396_180794032_180794096_180796309_180796473_180797744_180797851_180799531_180799700_180800280_180800397_180800704_180800768_180801733
transcript_56604.nnic	chr2	+	2166	11	NIC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	-14	0	combination_of_known_splicesites	FALSE	canonical	3	19	junction_7	65.8692644561938	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTTGTTTTATTCAATA	NA	False	NA	29	True	ATTAAA	-14	NA	180367041	180384073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_180367245_180373672_180373871_180374225_180374366_180375509_180375610_180377635_180377767_180378479_180378577_180378799_180378897_180381611_180381728_180382318_180382375_180382505_180382536_180383075
transcript_56610.nnic	chr2	+	1007	5	NNC	ENSMUSG00000023393.16	novel	754	7	NA	NA	47	-1	intron_retention	TRUE	non_canonical	0	0	junction_4	109.133805486659	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAGAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	180367102	180376217	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_180367245_180373672_180373801_180374225_180374366_180375509_180376005_180376115
transcript_56623.known	chr2	-	3184	5	FSM	ENSMUSG00000038848.15	ENSMUST00000037299.15	3184	5	0	0	0	0	multi-exon	FALSE	canonical	3	557	junction_4	33.5885024971343	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGTGTTCTTGTTTTC	NA	False	NA	-2	True	NA	NA	NA	180562742	180546169	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_180547462_180552479_180554001_180560927_180561008_180562104_180562130_180562476
transcript_56624.nic	chr2	-	791	2	ISM	ENSMUSG00000038848.15	ENSMUST00000108876.9	2272	6	9771	0	9209	0	3prime_fragment	FALSE	canonical	3	596	junction_1	0	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACAAAACACCTAATACA	NA	False	NA	37	True	TATAAA	-9	NA	180552971	180547162	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr2_-_180547462_180552479
transcript_5663.nnic	chr1	-	691	3	Antisense	novelGene_ENSMUSG00000026519.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_2	1	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTAAATGTTTTGAAAAGAA	NA	False	NA	NA	False	GATAAA	-1	NA	180793517	180792642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr1_-_180792928_180793010_180793192_180793292
transcript_56631.known	chr2	+	1178	7	FSM	ENSMUSG00000038840.8	ENSMUST00000108875.2	1178	7	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	4.30761599444003	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTCAGCTAGGCTCTCTC	NA	False	NA	NA	False	AATAAA	-19	NA	180570815	180575803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_180571307_180572597_180572698_180573051_180573131_180573211_180573258_180574711_180574784_180574929_180575129_180575612
transcript_56632.nnic	chr2	+	821	7	NNC	ENSMUSG00000038840.8	novel	1529	6	NA	NA	-459	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	6.71854812358213	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTCAGCTAGGCTCTCTC	NA	False	NA	NA	False	AATAAA	-19	NA	180570356	180575803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_180570491_180572597_180572698_180573051_180573131_180573211_180573258_180574711_180574784_180574929_180575129_180575612
transcript_56633.known	chr2	+	1529	6	FSM	ENSMUSG00000038840.8	ENSMUST00000137859.2	1529	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	3.81575680566778	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGCTCAGCTAGGCTCT	NA	False	NA	NA	False	AATAAA	-16	NA	180570815	180575800	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_180571307_180572597_180573131_180573211_180573258_180574711_180574784_180574929_180575129_180575612
transcript_56639.known	chr2	-	950	7	FSM	ENSMUSG00000027574.16	ENSMUST00000103053.10	950	7	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_2	10.8576649832682	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAATTCGCATCCCTGGT	NA	False	NA	NA	False	NA	NA	NA	180596492	180576564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_180576823_180577735_180577821_180578943_180579005_180584822_180585021_180585533_180585615_180585869_180586008_180596363
transcript_56641.known	chr2	-	865	6	FSM	ENSMUSG00000027574.16	ENSMUST00000108873.9	865	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	45.5719211796036	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAATTCGCATCCCTGGT	NA	False	NA	NA	False	NA	NA	NA	180596492	180576564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_180576823_180578943_180579005_180584822_180585021_180585533_180585615_180585869_180586008_180596363
transcript_56642.nnic	chr2	-	754	5	NIC	ENSMUSG00000027574.16	novel	950	7	NA	NA	-23	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_4	43.688528242549	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAATTCGCATCCCTGGT	NA	False	NA	NA	False	NA	NA	NA	180596515	180576564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_180576823_180577735_180577821_180578943_180579005_180584822_180585021_180596363
transcript_56648.known	chr2	+	2714	14	FSM	ENSMUSG00000027575.20	ENSMUST00000029092.13	2714	14	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_1	25.5745805752046	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCCAGTGCTTGCTTCAC	4034	False	NA	25	True	NA	NA	NA	180609026	180624319	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_180609123_180609394_180609608_180612843_180612908_180613366_180613477_180613776_180613949_180614487_180614589_180615253_180615341_180615852_180615950_180618099_180618157_180619112_180619146_180620963_180621021_180621453_180621514_180622190_180622268_180622829
transcript_56660.known	chr2	+	1393	13	FSM	ENSMUSG00000027575.20	ENSMUST00000185115.8	1393	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	103.455673546156	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGACTTGAGTTGGTGCTG	7840	False	NA	NA	False	NA	NA	NA	180612832	180623266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_180612908_180613366_180613477_180613776_180613949_180614487_180614589_180615253_180615341_180615852_180615950_180618099_180618157_180619112_180619146_180620204_180620235_180620963_180621021_180621453_180621514_180622190_180622268_180622829
transcript_56661.known	chr2	+	2639	12	FSM	ENSMUSG00000027575.20	ENSMUST00000108859.8	2639	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	79.8262576158915	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTTATCAGTGGTTGGT	4100	False	NA	20	True	NA	NA	NA	180609092	180624104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_180609608_180612843_180612908_180613366_180613477_180613776_180613949_180614487_180614589_180615253_180615341_180615852_180615950_180618099_180618157_180619112_180619146_180620963_180621021_180622196_180622268_180622829
transcript_56662.known	chr2	+	1885	13	FSM	ENSMUSG00000027575.20	ENSMUST00000108861.8	1885	13	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_11	89.7402114748765	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGTCTGCTAGTTCTTTC	4045	False	NA	NA	False	TTTAAA	-5	NA	180609037	180623493	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_180609123_180609326_180609608_180612843_180612908_180613366_180613477_180613776_180613949_180614487_180614589_180615253_180615341_180615852_180615950_180618099_180618157_180619112_180619146_180620963_180621021_180622190_180622268_180622829
transcript_56670.known	chr2	+	689	5	FSM	ENSMUSG00000016344.15	ENSMUST00000108841.2	689	5	0	0	0	0	multi-exon	TRUE	canonical	3	258	junction_1	248.035279748668	1790	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTGGTATGTTTGAAAC	3425	False	NA	1	True	AATAAA	-17	NA	180829128	180830297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_180829248_180829457_180829530_180829601_180829680_180829796_180829894_180829974
transcript_56674.known	chr2	+	1160	5	FSM	ENSMUSG00000016344.15	ENSMUST00000016488.13	1160	5	0	0	0	0	multi-exon	TRUE	canonical	3	201	junction_1	270.955139275859	2461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCCCAAGGTTGGGGATA	3336	False	NA	NA	False	NA	NA	NA	180829039	180830564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_180829248_180829342_180829530_180829601_180829680_180829796_180829894_180829974
transcript_5668.known	chr1	-	1741	9	FSM	ENSMUSG00000038776.14	ENSMUST00000036928.12	1741	9	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_5	19.7214984217731	171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTGGGCCAGATACCTT	5728	False	NA	-3	True	GATAAA	-18	NA	180845134	180817118	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_180817546_180817957_180818084_180819497_180819607_180821443_180821653_180822192_180822323_180823513_180823742_180827287_180827469_180829363_180829552_180844991
transcript_56684.known	chr2	+	750	4	FSM	ENSMUSG00000016344.15	ENSMUST00000146089.8	750	4	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_1	285.921123544395	1018	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTGGTATGTTTGAAAC	3436	False	NA	1	True	AATAAA	-17	NA	180829139	180830297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_180829248_180829457_180829680_180829796_180829894_180829974
transcript_56686.known	chr2	+	1153	4	FSM	ENSMUSG00000016344.15	ENSMUST00000127971.8	1153	4	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_1	312.789954371229	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCCTCCCCACTACTTGC	3385	False	NA	NA	False	NA	NA	NA	180829088	180830534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_180829248_180829342_180829680_180829796_180829894_180829974
transcript_56693.known	chr2	+	771	3	FSM	ENSMUSG00000016344.15	ENSMUST00000138800.8	771	3	0	0	0	0	multi-exon	FALSE	canonical	3	861	junction_2	3.5	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTGGTATGTTTGAAAC	3625	False	NA	1	True	AATAAA	-17	NA	180829328	180830297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_180829680_180829796_180829894_180829974
transcript_56694.known	chr2	+	510	2	FSM	ENSMUSG00000016344.15	ENSMUST00000135011.2	510	2	0	0	0	0	multi-exon	FALSE	canonical	3	861	junction_1	0	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTGGTATGTTTGAAAC	4003	False	NA	1	True	AATAAA	-17	NA	180829706	180830297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_180829894_180829974
transcript_56695.known	chr2	+	1154	2	FSM	ENSMUSG00000047841.9	ENSMUST00000108835.2	1154	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAGACACAACCCTACTT	NA	False	NA	NA	False	AATAAA	-22	NA	180861829	180864242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_180861928_180863186
transcript_56702.known	chr2	-	1136	5	FSM	ENSMUSG00000027581.13	ENSMUST00000103045.4	1136	5	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_1	19.0312243431683	982	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACGTGTGGCTTTTCAT	NA	False	NA	-6	True	AATAAA	-16	NA	180956293	180948251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_180948617_180949008_180949201_180950513_180950690_180950939_180951036_180955986
transcript_56704.known	chr2	+	4401	34	FSM	ENSMUSG00000038685.19	ENSMUST00000054622.15	4401	34	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_31	50.0269348938753	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTCTGTATTGTGGTCT	NA	False	NA	15	True	AATAAA	-16	NA	180961554	180998409	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997102_180997346_180997443_180997606_180997716
transcript_56705.known	chr2	+	4243	33	FSM	ENSMUSG00000038685.19	ENSMUST00000108815.8	4243	33	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_30	41.94582396899	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTCTGTATTGTGGTCT	NA	False	NA	15	True	AATAAA	-16	NA	180961577	180998409	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180997120_180997346_180997443_180997606_180997716
transcript_56708.known	chr2	+	3666	11	FSM	ENSMUSG00000027582.17	ENSMUST00000116366.9	3666	11	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_6	46.2520269826091	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTGGCTCTTGGTTGCTTT	NA	False	NA	NA	False	ATTAAA	-15	NA	181007215	181025421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_181008046_181020175_181020310_181020543_181020700_181021362_181021483_181021566_181021973_181022167_181023188_181023986_181024108_181024279_181024338_181024408_181024497_181024591_181024954_181025050
transcript_56720.known	chr2	-	2483	7	FSM	ENSMUSG00000038671.16	ENSMUST00000170190.8	2483	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	111.15554667022	523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAACTATAAGGCTACAGG	6076	False	NA	NA	False	ACTAAA	-23	NA	181007197	180999482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005890_181006103_181006192_181007011
transcript_56724.known	chr2	+	2072	6	FSM	ENSMUSG00000027582.17	ENSMUST00000108807.9	2072	6	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_3	10.1074230147946	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATTCTCTCAGTGGAGAC	NA	False	NA	5	True	ATTAAA	-12	NA	181007197	181022575	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_181008046_181020175_181020310_181020543_181020700_181021362_181021483_181021566_181021973_181022167
transcript_5673.known	chr1	-	9392	23	FSM	ENSMUSG00000026516.9	ENSMUST00000027797.9	9392	23	0	0	0	0	multi-exon	TRUE	canonical	3	480	junction_18	71.7805568876937	225	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAGTGATCTGGAACTTT	NA	False	NA	NA	False	AATAAA	-22	NA	180971769	180914702	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_180921475_180922548_180922620_180924700_180924790_180926691_180926769_180929093_180929201_180932636_180932737_180934424_180934545_180936724_180936788_180939852_180939958_180941647_180941867_180945000_180945251_180947919_180948065_180951431_180951550_180954502_180954605_180957073_180957209_180957958_180958036_180958302_180958436_180962356_180962630_180964437_180964496_180966635_180966733_180966818_180966872_180969890_180969965_180971615
transcript_56730.known	chr2	-	2318	7	FSM	ENSMUSG00000038671.16	ENSMUST00000185118.8	2318	7	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	105.887387770635	512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTTAGCCAGTCACAAGGA	6138	False	NA	34	True	AATAAA	-18	NA	181007135	180999621	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_181001355_181001431_181001533_181003183_181003266_181005806_181005890_181006103_181006192_181006397_181006505_181007011
transcript_56731.known	chr2	-	1822	5	FSM	ENSMUSG00000038671.16	ENSMUST00000152580.8	1822	5	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_2	29.3715423496962	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGTGTAGGTATTCAGA	6146	False	NA	NA	False	NA	NA	NA	181007127	181001107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806
transcript_56732.known	chr2	+	1775	1	FSM	ENSMUSG00000055882.9	ENSMUST00000069649.9	1775	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTAATGTGTGGTATTTG	NA	False	NA	NA	False	NA	NA	NA	181134998	181136773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_181135000_181136800
transcript_56736.known	chr2	+	985	9	FSM	ENSMUSG00000000827.19	ENSMUST00000108799.10	985	9	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_5	401.298965080898	1119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTGTGCCATCCTTTCAA	NA	False	NA	36	True	CATAAA	-33	NA	181139023	181157180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181152296_181152324_181153366_181153409_181154831_181154881_181156872
transcript_56742.known	chr2	+	3603	8	FSM	ENSMUSG00000000827.19	ENSMUST00000149163.8	3603	8	0	0	0	0	multi-exon	FALSE	canonical	3	669	junction_5	184.043805788132	1366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATTTGTAAGGTTTTTTT	NA	False	NA	NA	False	AATAAA	-27	NA	181138957	181159759	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181153366_181153409_181154831_181154881_181156872
transcript_56752.known	chr2	+	2950	7	FSM	ENSMUSG00000000827.19	ENSMUST00000000844.15	2950	7	0	0	0	0	multi-exon	FALSE	canonical	3	318	junction_5	284.174486695919	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACAATTCACTATGCTCC	NA	False	NA	NA	False	NA	NA	NA	181138973	181159164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181154831_181154881_181156872
transcript_56754.known	chr2	+	1799	7	FSM	ENSMUSG00000000827.19	ENSMUST00000069712.9	1799	7	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_3	303.991227943615	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTCTGCTGTCATCTTT	NA	False	NA	NA	False	AATGAA	-44	NA	181138991	181158049	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181149958_181150061_181153366_181153409_181154831_181154881_181156872
transcript_56760.known	chr2	+	3475	6	FSM	ENSMUSG00000000827.19	ENSMUST00000108800.8	3475	6	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_3	391.498454658508	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAACATTTGTAAGGTTT	NA	False	NA	NA	False	AATAAA	-23	NA	181138979	181159755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181149958_181150061_181154831_181154881_181156872
transcript_56772.nic	chr2	+	1122	7	NIC	ENSMUSG00000000826.17	novel	3728	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_1	77.7924589318699	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTCTGTTTTATCCTTTT	7046	False	NA	22	True	TTTAAA	-18	NA	181162318	181191383	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_+_181162491_181163027_181163081_181188163_181188282_181189132_181189347_181190462_181190635_181190718_181190794_181191065
transcript_56773.known	chr2	+	3728	6	FSM	ENSMUSG00000000826.17	ENSMUST00000116365.9	3728	6	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_5	67.7642973843897	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAAACAAAACAAAAG	7046	False	NA	NA	False	NA	NA	NA	181162318	181194042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_181162491_181188163_181188282_181189132_181189347_181190462_181190635_181190718_181190794_181191065
transcript_56774.known	chr2	+	3664	6	FSM	ENSMUSG00000000826.17	ENSMUST00000108797.8	3664	6	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	79.8884221899519	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAAAACAAAGCAAA	7071	False	NA	NA	False	NA	NA	NA	181162343	181194025	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_181162491_181163027_181163081_181188163_181188282_181189132_181189347_181190462_181190635_181191065
transcript_56775.known	chr2	+	6578	5	FSM	ENSMUSG00000000826.17	ENSMUST00000072334.12	6578	5	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_4	50.7413785780402	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTTTGTCTTTTTAATT	7005	False	NA	NA	False	NA	NA	NA	181162277	181196926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_181162491_181188163_181188282_181189132_181189347_181190462_181190635_181191065
transcript_56776.known	chr2	+	3054	21	FSM	ENSMUSG00000002455.15	ENSMUST00000002529.7	3054	21	0	0	0	0	multi-exon	FALSE	canonical	3	340	junction_3	47.7921280128851	1003	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTGGGGCTTGGGCCTCA	2494	False	NA	28	True	ATTAAA	-16	NA	181243111	181297453	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_181243325_181249912_181250082_181257769_181257889_181262361_181262441_181263579_181263757_181263954_181264111_181273227_181273323_181273723_181273881_181274547_181274711_181277825_181277945_181278685_181278905_181282384_181282508_181287263_181287386_181289081_181289221_181290818_181290939_181291214_181291392_181291889_181292024_181292878_181292971_181294226_181294342_181296628_181296756_181297214
transcript_56784.known	chr2	-	1849	15	FSM	ENSMUSG00000089917.8	ENSMUST00000057816.15	1849	15	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_14	14.4936650482413	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGTGTGGCAGAATGTAACC	4547	False	NA	1	True	AATAAA	-23	NA	181223801	181210941	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_181211184_181211260_181211418_181211488_181211597_181211701_181211825_181211925_181211989_181212101_181212196_181212292_181212392_181214262_181214280_181214866_181214929_181215007_181215198_181216004_181216077_181216161_181216333_181216443_181216551_181216639_181216831_181223648
transcript_56788.known	chr2	-	1782	14	FSM	ENSMUSG00000089917.8	ENSMUST00000129469.8	1782	14	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_7	28.5913877876066	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTAGAAAATGATCGTGT	4583	False	NA	-13	True	AATAAA	-40	NA	181223765	181210955	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_181211184_181211260_181211418_181211488_181211597_181211701_181211825_181211925_181211989_181212101_181212196_181212292_181212392_181214866_181214929_181215007_181215198_181216004_181216077_181216161_181216333_181216443_181216551_181216639_181216831_181223648
transcript_56803.known	chr2	-	2131	5	FSM	ENSMUSG00000038605.12	ENSMUST00000183836.2	2131	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	19.6850196850295	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGCCTCAGTGTTGGGTC	1043	False	NA	-5	True	AATAAA	-11	NA	181240991	181237013	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_181238399_181238539_181238681_181238964_181239137_181239220_181239387_181240724
transcript_56804.known	chr2	-	2164	5	FSM	ENSMUSG00000038605.12	ENSMUST00000060173.9	2164	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_4	9.60143218483576	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCAGTGTTGGGTCTCT	1029	False	NA	-2	True	AATAAA	-14	NA	181241005	181237010	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_181238399_181238539_181238681_181238964_181239137_181239220_181239403_181240724
transcript_56806.known	chr2	-	676	4	FSM	ENSMUSG00000089917.8	ENSMUST00000146823.8	676	4	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_3	13.0724477007517	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACCCTGTATGGTGCGA	4577	False	NA	NA	False	ATTAAA	-21	NA	181223771	181216077	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_181216333_181216443_181216551_181216639_181216831_181223648
transcript_56808.known	chr2	-	569	3	FSM	ENSMUSG00000089917.8	ENSMUST00000156308.8	569	3	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_1	0.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATTTAGAAAATGATCGT	1453	False	NA	-15	True	AATAAA	-38	NA	181211674	181210957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_181211184_181211260_181211418_181211488
transcript_56809.known	chr2	+	755	4	FSM	ENSMUSG00000108976.2	ENSMUST00000207856.2	755	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.69967317119759	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCCCTGTTCTCCCACTC	6083	False	NA	NA	False	NA	NA	NA	181298826	181301260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_181299016_181300412_181300689_181300785_181300939_181301123
transcript_56810.known	chr2	-	1620	2	FSM	ENSMUSG00000046470.6	ENSMUST00000054491.6	1620	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGTGATCACTAGCATCCA	880	False	NA	NA	False	ATTAAA	-21	NA	181313433	181311628	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_181312790_181312974
transcript_56812.nnic	chr2	+	1118	10	NNC	ENSMUSG00000059540.16	novel	1183	10	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	13.622784110217	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGGCTTCAGCTGGGTCC	2273	False	NA	13	True	ATTAAA	-27	NA	181322083	181329855	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr2_+_181322194_181325005_181325069_181325340_181325447_181326235_181326327_181327584_181327716_181327982_181328040_181328390_181328546_181328620_181328768_181329406_181329479_181329669
transcript_56813.known	chr2	+	1183	10	FSM	ENSMUSG00000059540.16	ENSMUST00000103042.10	1183	10	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	6.17841723309237	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTGGGTCCTGTCCTTCC	2292	False	NA	22	True	ATTAAA	-36	NA	181322102	181329864	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_181322269_181325005_181325069_181325340_181325447_181326235_181326327_181327584_181327716_181327982_181328040_181328390_181328546_181328620_181328768_181329406_181329479_181329669
transcript_56817.known	chr2	-	1216	6	FSM	ENSMUSG00000002458.14	ENSMUST00000108776.8	1216	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_5	50.8660987299006	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGCTGGCCCTGTCCAACT	NA	False	NA	NA	False	NA	NA	NA	181335603	181330858	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_181331089_181331169_181331405_181331494_181331570_181333025_181333148_181333282_181333389_181335155
transcript_56821.nic	chr2	-	833	5	NIC	ENSMUSG00000002458.14	novel	1511	6	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	60.2702248212167	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTTCTTTCAAGTTGCT	NA	False	NA	-12	True	AATAAA	-17	NA	181335772	181330211	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr2_-_181330512_181331169_181331405_181331494_181331570_181333025_181333148_181335671
transcript_56822.known	chr2	-	1110	5	FSM	ENSMUSG00000002458.14	ENSMUST00000108771.2	1110	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	58.2296101652759	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGCTGGCCCTGTCCAACT	NA	False	NA	NA	False	NA	NA	NA	181335603	181330858	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_181331089_181331169_181331405_181331494_181331570_181333025_181333148_181335155
transcript_56823.known	chr2	-	779	5	FSM	ENSMUSG00000002458.14	ENSMUST00000108772.8	779	5	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	46.2729672703189	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTGCAGGGTTCTAAGCT	NA	False	NA	NA	False	AATAGA	-15	NA	181335740	181330810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_181331089_181331169_181331405_181331494_181331570_181333025_181333148_181335671
transcript_56830.known	chr2	-	1511	6	FSM	ENSMUSG00000002458.14	ENSMUST00000002532.9	1511	6	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_5	20.8461027532726	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTTGTTCTTTCAAGTT	NA	False	NA	-15	True	AATAAA	-14	NA	181335770	181330214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_181331089_181331169_181331405_181331494_181331570_181333025_181333148_181333282_181333389_181335671
transcript_56831.known	chr2	-	424	2	FSM	ENSMUSG00000002458.14	ENSMUST00000144476.2	424	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTTCTTTCAAGTTGCT	NA	False	NA	-12	True	AATAAA	-17	NA	181331293	181330211	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_181330512_181331169
transcript_56832.known	chr2	-	642	5	FSM	ENSMUSG00000002458.14	ENSMUST00000108779.8	642	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	54.9408773137088	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTTGTTCTTTCAAGTT	NA	False	NA	-15	True	AATAAA	-14	NA	181335713	181330214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_-_181330512_181331494_181331570_181333025_181333148_181333282_181333389_181335671
transcript_56835.known	chr2	+	3569	7	FSM	ENSMUSG00000027589.15	ENSMUST00000029116.14	3569	7	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_6	11.3431330181157	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTCTGTGTTGAGTATG	NA	False	NA	26	True	AATAAA	-29	NA	181479646	181499254	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_181479778_181482947_181483132_181484167_181484499_181486188_181486292_181488260_181488433_181493378_181493503_181496730
transcript_56837.known	chr2	+	2948	3	FSM	ENSMUSG00000038628.9	ENSMUST00000039551.9	2948	3	0	0	0	0	multi-exon	FALSE	canonical	3	712	junction_2	38.5	1416	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTAGTGCATATAAGTGT	8896	False	NA	NA	False	NA	NA	NA	181506129	181512623	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr2_+_181506363_181507738_181507827_181509996
transcript_56839.known	chr3	-	2038	6	FSM	ENSMUSG00000040374.14	ENSMUST00000165309.8	2038	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	22.6856783015188	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGACTAGAGGTCTTTTGT	NA	False	NA	NA	False	AATAAA	-22	NA	5641210	5625247	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_5626825_5627728_5627793_5628224_5628333_5628679_5628790_5630192_5630259_5641097
transcript_5684.known	chr1	+	531	4	FSM	ENSMUSG00000062169.14	ENSMUST00000193907.6	531	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	993.032504782978	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCACAATTGAGGAGCCAGA	NA	False	NA	NA	False	NA	NA	NA	180972257	180993813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_180972467_180983423_180983537_180989639_180989781_180993745
transcript_56840.known	chr3	-	1777	6	FSM	ENSMUSG00000040374.14	ENSMUST00000071280.8	1777	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	21.3672646822189	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGATGATTGTGCATTTAT	NA	False	NA	-4	True	AATAAA	-16	NA	5641188	5625563	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_5626825_5627728_5627793_5628224_5628333_5628679_5628790_5635546_5635690_5641097
transcript_56843.known	chr3	-	1749	5	FSM	ENSMUSG00000040374.14	ENSMUST00000059021.10	1749	5	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	14.3592304807744	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATTGTGCATTTATTTTT	NA	False	NA	0	True	AATAAA	-20	NA	5641299	5625559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_5626825_5627728_5627793_5628224_5628333_5628679_5628790_5641097
transcript_56844.known	chr3	-	2051	5	FSM	ENSMUSG00000040374.14	ENSMUST00000164828.8	2051	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	24.0052077683156	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGACTAGAGGTCTTTTGT	NA	False	NA	NA	False	AATAAA	-22	NA	5641210	5625247	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_5626825_5628224_5628333_5628679_5628790_5635546_5635690_5641097
transcript_56845.known	chr3	-	1587	4	FSM	ENSMUSG00000040374.14	ENSMUST00000195855.6	1587	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	22.2161102706022	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATTGTGCATTTATTTTT	NA	False	NA	0	True	AATAAA	-20	NA	5641205	5625559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_5626821_5628224_5628333_5628679_5628790_5641097
transcript_56846.nic	chr3	-	1921	4	NIC	ENSMUSG00000040374.14	novel	1749	5	NA	NA	-237	-1	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	25.9786236911983	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGATTGTGCATTTATTTT	NA	False	NA	-1	True	AATAAA	-19	NA	5641536	5625560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_-_5626825_5628224_5628333_5628679_5628790_5641097
transcript_56847.known	chr3	+	490	1	FSM	ENSMUSG00000103034.2	ENSMUST00000192045.2	490	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	682	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGGCACAGAGCTTAACAA	NA	False	NA	NA	False	AATAAA	-33	NA	5815865	5816355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_5815900_5816400
transcript_56848.known	chr3	-	433	1	FSM	ENSMUSG00000104274.2	ENSMUST00000193158.2	433	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	216	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAGATAGCTCATGGACAG	NA	False	NA	NA	False	AATACA	-30	NA	7258270	7257837	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_7257800_7258300
transcript_56849.known	chr3	+	3617	3	FSM	ENSMUSG00000027499.13	ENSMUST00000028999.12	3617	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	0.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTCTCTCAAGAGTCAT	2674	False	NA	21	True	ATTAAA	-22	NA	7431729	7510426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_7431813_7502397_7502576_7507070
transcript_56853.known	chr3	+	3292	9	FSM	ENSMUSG00000043542.13	ENSMUST00000051064.9	3292	9	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_7	36.9256008752735	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCTTTTTTTTCTTGG	NA	False	NA	10	True	NA	NA	NA	7568542	7618896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_7568588_7581515_7581593_7583423_7583541_7589185_7589328_7591328_7591478_7593089_7593190_7593644_7593745_7604135_7604244_7616442
transcript_56864.nic	chr3	+	680	3	ISM	ENSMUSG00000043542.13	ENSMUST00000193010.2	1420	8	-80	33231	-77	-32657	5prime_fragment	FALSE	canonical	3	164	junction_1	6	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTTTTGTTTACTTAAG	NA	False	NA	NA	False	AATAAA	-15	NA	7568465	7583904	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_7568588_7581515_7581593_7583423
transcript_56865.nic	chr3	+	636	2	ISM	ENSMUSG00000043542.13	ENSMUST00000193010.2	1420	8	-80	35106	-77	-34532	5prime_fragment	FALSE	canonical	3	164	junction_1	0	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACATTTAAAATTTTTGT	NA	False	NA	NA	False	NA	NA	NA	7568465	7582029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_7568588_7581515
transcript_56866.known	chr3	+	1420	8	FSM	ENSMUSG00000043542.13	ENSMUST00000193010.2	1420	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	71.9004413713	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAGATGAA	NA	False	NA	NA	False	NA	NA	NA	7568545	7617135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_7568588_7581515_7581593_7583423_7583541_7589185_7589328_7591328_7591478_7593089_7593190_7593644_7593745_7616442
transcript_5687.known	chr1	+	3268	5	FSM	ENSMUSG00000062169.14	ENSMUST00000134115.8	3268	5	0	0	0	0	multi-exon	FALSE	canonical	3	1843	junction_1	136.918543302213	4584	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGATTGTTCTATTGCTTG	NA	False	NA	NA	False	NA	NA	NA	180978495	180996559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_180978627_180981299_180981369_180983423_180983537_180989639_180989781_180993745
transcript_56880.known	chr3	+	2073	5	FSM	ENSMUSG00000027500.11	ENSMUST00000029002.9	2073	5	0	0	0	0	multi-exon	FALSE	canonical	3	1699	junction_2	84.762535946018	5640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACGGTTTGGTCTGGTCTC	NA	False	NA	23	True	AATAAA	-23	NA	8574419	8626666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_8574691_8606900_8606997_8610632_8610806_8619851_8620044_8625325
transcript_56881.known	chr3	+	308	2	FSM	ENSMUSG00000027500.11	ENSMUST00000194307.2	308	2	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAATAAAGAATTGGAGTT	NA	False	NA	-8	True	NA	NA	NA	8625325	8626635	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_8625397_8626398
transcript_56882.known	chr3	-	2423	5	FSM	ENSMUSG00000040289.9	ENSMUST00000042412.5	2423	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	1.11803398874989	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTACTGTGTCTGTCTTCCT	NA	False	NA	NA	False	AATAAA	-18	NA	8732316	8728418	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_8730125_8731004_8731087_8731331_8731416_8731561_8731638_8731841
transcript_5689.nnic	chr1	-	736	3	Genic_Genomic	ENSMUSG00000081214.4	novel	333	1	NA	NA	-102034	58	multi-exon	FALSE	non_canonical	0	0	junction_1	0	125122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2641	False	NA	NA	False	AATAAA	-39	NA	181171919	181069494	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr1_-_181069924_181171482_181171651_181171780
transcript_56891.known	chr3	-	783	3	FSM	ENSMUSG00000040269.6	ENSMUST00000042148.6	783	3	0	0	0	0	multi-exon	FALSE	canonical	3	890	junction_1	0.5	12243	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGCCGTGGTTCTTTT	NA	False	NA	-1	True	NA	NA	NA	8988978	8867205	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_8867475_8965045_8965228_8988646
transcript_56895.known	chr3	-	673	7	FSM	ENSMUSG00000027506.16	ENSMUST00000134788.8	673	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1284.12148957955	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGAGAAGTCCTGAATTC	NA	False	NA	NA	False	AAAAAG	-37	NA	9069538	8996198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_8996235_9000051_9000101_9009670_9009773_9012540_9012690_9018743_9018860_9068347_9068495_9069464
transcript_56898.known	chr3	-	2193	6	FSM	ENSMUSG00000027506.16	ENSMUST00000091354.12	2193	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1287.01132862147	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATAGGTTTCAATATTTA	NA	False	NA	-28	True	AATAAA	-15	NA	9029106	8994657	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_8996235_9000051_9000101_9009670_9009773_9012540_9012690_9018743_9018860_9028906
transcript_56906.known	chr3	-	3081	7	FSM	ENSMUSG00000027506.16	ENSMUST00000091355.12	3081	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1376.49082815688	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGTTCTTTTTTATGTATT	NA	False	NA	NA	False	AATAAA	-17	NA	9069538	8993685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_8996235_9000051_9000101_9001498_9001541_9009670_9009773_9012540_9012690_9018743_9018860_9069464
transcript_5691.known	chr1	-	333	1	FSM	ENSMUSG00000081214.4	ENSMUST00000117444.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11149	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	NA	False	NA	NA	False	NA	NA	NA	181069885	181069552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_181069600_181069900
transcript_56921.known	chr3	+	987	4	FSM	ENSMUSG00000027533.11	ENSMUST00000029046.9	987	4	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_1	88.411914732499	3208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACAAATGGTGTGATTATA	NA	False	NA	NA	False	AATAAA	-14	NA	10077607	10081667	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_10077779_10080030_10080204_10080531_10080634_10081126
transcript_56927.known	chr3	-	583	4	FSM	ENSMUSG00000027528.13	ENSMUST00000029038.8	583	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	0.816496580927726	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATTGTTTTCCAGCTGT	NA	False	NA	NA	False	AATAAA	-12	NA	10262282	10258685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_10258863_10259026_10259129_10259735_10259909_10262151
transcript_56929.known	chr3	-	548	5	FSM	ENSMUSG00000027530.16	ENSMUST00000119761.2	548	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.11803398874989	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTGTTCGAATAAAACTCC	NA	False	NA	NA	False	NA	NA	NA	10366234	10311010	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_10311113_10312672_10312775_10315099_10315273_10317296_10317418_10366184
transcript_56931.known	chr3	-	4185	9	FSM	ENSMUSG00000027531.17	ENSMUST00000065938.15	4185	9	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_8	38.1901083397259	1243	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCATGTTTTTCTCACTT	NA	False	NA	NA	False	AGTAAA	-13	NA	10396499	10377015	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_10380362_10381162_10381315_10386671_10386781_10387963_10388073_10389111_10389158_10391166_10391272_10393404_10393539_10394002_10394069_10396381
transcript_56941.known	chr3	-	954	8	FSM	ENSMUSG00000039795.15	ENSMUST00000184644.8	954	8	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_7	262.492293375696	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACAGTCAGCTTTGTTGTG	NA	False	NA	NA	False	NA	NA	NA	10416377	10405741	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412265_10413569_10413613_10416228
transcript_5695.known	chr1	-	3510	14	FSM	ENSMUSG00000004880.12	ENSMUST00000005003.12	3510	14	0	0	0	0	multi-exon	FALSE	canonical	3	1956	junction_6	154.844109428974	933	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGCTGTTAGAGCCTCA	NA	False	NA	-50	True	AATAAA	-33	NA	181669944	181642899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942_181666122_181669852
transcript_56956.known	chr3	-	936	8	FSM	ENSMUSG00000039795.15	ENSMUST00000108377.8	936	8	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_2	268.235352035545	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTGCTGTCTTAGAATT	NA	False	NA	NA	False	TTTAAA	-7	NA	10416373	10405678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_10405966_10406053_10406206_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412265_10413569_10413613_10416301
transcript_56959.known	chr3	-	2288	8	FSM	ENSMUSG00000027534.17	ENSMUST00000029047.12	2288	8	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_2	14.2771402841703	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGGTGAGTTTCTTTAGT	NA	False	NA	1	True	ATTAAA	-20	NA	10505147	10483205	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_10484284_10485256_10485377_10485799_10485937_10491222_10491293_10499417_10499567_10500505_10500593_10502870_10503345_10504974
transcript_56967.known	chr3	-	2512	7	FSM	ENSMUSG00000027534.17	ENSMUST00000099223.11	2512	7	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	44.7837396086273	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGAGTGTTATCAGTGTC	NA	False	NA	2	True	AATAAA	-27	NA	10505162	10482876	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_10484284_10485799_10485937_10491222_10491293_10499417_10499567_10500505_10500593_10502870_10503345_10504974
transcript_56978.known	chr3	+	6188	5	FSM	ENSMUSG00000027536.7	ENSMUST00000029049.7	6188	5	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_1	13.9709520076479	1199	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATGTATCCTATTTCTTT	NA	False	NA	1	True	ATTAAA	-16	NA	10431966	10460397	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_10432282_10450611_10450790_10452096_10452212_10454608_10454763_10454971
transcript_56988.known	chr3	-	1084	4	FSM	ENSMUSG00000027534.17	ENSMUST00000195822.2	1084	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	66.4279057826353	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAACCC	NA	False	NA	NA	False	NA	NA	NA	10505160	10483996	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_10484284_10485799_10485937_10502870_10503345_10504974
transcript_56992.known	chr3	+	2798	1	FSM	ENSMUSG00000095661.2	ENSMUST00000066794.9	2798	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	463	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAGAAAAATAGTAAG	NA	False	NA	NA	False	AATAAA	-32	NA	12920895	12923693	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_12920900_12923700
transcript_56993.known	chr3	+	3391	19	FSM	ENSMUSG00000027550.15	ENSMUST00000091325.10	3391	19	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_6	18.5947689444845	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGTTGATAATTGCACAC	NA	False	NA	NA	False	CATAAA	-26	NA	14598883	14631163	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_14599083_14601058_14601265_14601533_14601600_14602269_14602438_14604688_14604865_14604970_14605127_14610555_14610753_14612306_14612455_14613167_14613317_14615310_14615516_14616447_14616588_14619363_14619566_14622248_14622435_14623310_14623486_14624287_14624452_14627183_14627393_14627483_14627622_14628018_14628155_14630792
transcript_56994.known	chr3	+	5638	19	FSM	ENSMUSG00000027550.15	ENSMUST00000169079.8	5638	19	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_7	12.3057750168542	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATGCATCATTTCTATGT	NA	False	NA	20	True	AATAAA	-20	NA	14598882	14633361	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_14599083_14601058_14601265_14601533_14601600_14602269_14602438_14604688_14604865_14604970_14605175_14610555_14610753_14612306_14612455_14613167_14613317_14615310_14615516_14616447_14616588_14619363_14619566_14622248_14622435_14623310_14623486_14624287_14624452_14627183_14627393_14627483_14627622_14628018_14628155_14630792
transcript_56996.known	chr3	+	3359	19	FSM	ENSMUSG00000027550.15	ENSMUST00000108370.9	3359	19	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_18	19.4050394371038	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAGTTTTCTCTCTGAAA	NA	False	NA	NA	False	AATAAA	-27	NA	14598847	14637718	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_14599083_14601058_14601265_14601533_14601600_14602269_14602438_14604688_14604865_14604970_14605175_14610555_14610753_14612306_14612455_14613167_14613317_14615310_14615516_14616447_14616588_14619363_14619566_14622248_14622435_14623310_14623486_14624287_14624452_14627183_14627393_14627483_14627622_14628018_14628155_14637463
transcript_57.known	ERCC-00113	+	825	1	FSM	ERCC-00113A	DQ883663	825	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33347	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00113_+_0_800
transcript_5700.known	chr1	-	1890	1	FSM	ENSMUSG00000022995.17	ENSMUST00000192768.2	1890	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	181740162	181738272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_181738300_181740200
transcript_57005.nic	chr3	+	730	3	ISM	ENSMUSG00000027550.15	ENSMUST00000165436.2	1518	10	-155	14720	-9	-14720	5prime_fragment	FALSE	canonical	3	64	junction_2	22.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGCTACAGTGAGGAAAAC	NA	False	NA	NA	False	AATGAA	-34	NA	14598838	14601813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_14599083_14601058_14601265_14601533
transcript_57009.known	chr3	+	1751	8	FSM	ENSMUSG00000027552.15	ENSMUST00000165922.3	1751	8	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	75.6598186837988	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATCTTTGGGGGAATGT	1952	False	NA	29	True	AATAAA	-22	NA	14643730	14671368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_14644084_14652369_14652480_14653199_14653362_14666059_14666107_14667707_14667773_14668697_14668966_14670184_14670230_14670667
transcript_5701.known	chr1	-	846	3	FSM	ENSMUSG00000022995.17	ENSMUST00000195840.2	846	3	0	0	0	0	multi-exon	FALSE	canonical	3	327	junction_2	6.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACAAGAAGTTAGCTTGGT	NA	False	NA	NA	False	NA	NA	NA	181784077	181750763	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_181751406_181758242_181758328_181783958
transcript_57014.known	chr3	-	435	4	FSM	ENSMUSG00000078784.9	ENSMUST00000185384.7	435	4	0	0	0	0	multi-exon	FALSE	canonical	3	4849	junction_3	245.494512271773	23501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTTAAATCTTGTTAAT	NA	False	NA	0	True	AATAAA	-23	NA	14676345	14671343	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_14671469_14672236_14672354_14674600_14674718_14676269
transcript_57015.known	chr3	-	1174	3	FSM	ENSMUSG00000078784.9	ENSMUST00000186870.7	1174	3	0	0	0	0	multi-exon	FALSE	canonical	3	4849	junction_2	211	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATTTCTTTAAATCTTG	NA	False	NA	-5	True	AATAAA	-18	NA	14676321	14671348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_14672354_14674600_14674718_14676269
transcript_57016.known	chr3	-	508	2	FSM	ENSMUSG00000078784.9	ENSMUST00000190064.2	508	2	0	0	0	0	multi-exon	FALSE	canonical	3	4849	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGCTGAAGTACAATTTTT	NA	False	NA	NA	False	TATAAA	-10	NA	14676303	14674243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_14674718_14676269
transcript_57017.known	chr3	-	559	4	FSM	ENSMUSG00000078784.9	ENSMUST00000108365.4	559	4	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_3	2488.45909483493	903	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATTTCTTTAAATCTTG	NA	False	NA	-5	True	AATAAA	-18	NA	14676281	14671348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_14671469_14672236_14672354_14674600_14674718_14676076
transcript_57018.known	chr3	-	278	3	FSM	ENSMUSG00000078784.9	ENSMUST00000185423.2	278	3	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_1	2412	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACTTTATTTCTTTAAAT	NA	False	NA	-9	True	AATAAA	-14	NA	14676314	14671352	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_14671469_14674600_14674718_14676269
transcript_5702.known	chr1	+	1367	3	FSM	ENSMUSG00000026511.8	ENSMUST00000027792.6	1367	3	0	0	0	0	multi-exon	FALSE	canonical	3	1020	junction_2	65.5	4850	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTGTATAGGTTTCTTT	NA	False	NA	26	True	AATAAA	-34	NA	181952314	181959972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_181952541_181956248_181956318_181958900
transcript_57020.known	chr3	+	2299	7	FSM	ENSMUSG00000027555.9	ENSMUST00000029071.9	2299	7	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_4	16.344384016808	537	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTATCTTTTGGAAGAT	2179	False	NA	NA	False	AATAAA	-15	NA	14706786	14728062	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_14706906_14710096_14710295_14715718_14715838_14719943_14720040_14721288_14721352_14721968_14722125_14726514
transcript_57024.nic	chr3	+	1722	8	NIC	ENSMUSG00000027562.13	novel	1788	7	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	37.7661980385333	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGGTGCCTGATTGTCT	NA	False	NA	11	True	AATAAA	-14	NA	14951315	14965830	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_+_14951432_14951669_14951847_14952893_14953092_14960081_14960201_14960594_14960688_14961759_14961823_14962973_14963130_14965030
transcript_57025.known	chr3	+	1788	7	FSM	ENSMUSG00000027562.13	ENSMUST00000029078.9	1788	7	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_4	9.4339811320566	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGGTGCCTGATTGTCT	NA	False	NA	11	True	AATAAA	-14	NA	14951487	14965830	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_14951847_14952893_14953092_14960081_14960201_14960594_14960688_14961759_14961823_14962973_14963130_14965030
transcript_57027.known	chr3	+	3196	6	FSM	ENSMUSG00000047213.15	ENSMUST00000191774.6	3196	6	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	175.937943605125	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTGATGTTTTATTGAT	NA	False	NA	5	True	ATTAAA	-17	NA	16237399	16269170	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_16237685_16238085_16238111_16241130_16241280_16243641_16243728_16257989_16259589_16268118
transcript_57028.known	chr3	+	4929	6	FSM	ENSMUSG00000047213.15	ENSMUST00000108346.5	4929	6	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_4	138.147167904377	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTAGTTCATTTACATTT	NA	False	NA	NA	False	ATTAAA	-18	NA	16237399	16271019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_16237685_16238085_16238111_16243641_16243728_16257350_16257384_16257989_16259589_16268118
transcript_57029.known	chr3	+	5102	5	FSM	ENSMUSG00000047213.15	ENSMUST00000108345.9	5102	5	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_3	82.6211232070831	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTTCTTTCCTTTTTA	NA	False	NA	14	True	AATAAA	-16	NA	16237375	16271201	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_16237685_16238085_16238111_16243641_16243728_16257989_16259589_16268118
transcript_5703.known	chr1	+	823	2	FSM	ENSMUSG00000026511.8	ENSMUST00000111018.2	823	2	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	0	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACCTTTCTTGCCAGGTTC	NA	False	NA	NA	False	NA	NA	NA	181952301	181959484	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_181952541_181958900
transcript_57033.known	chr3	-	2166	6	FSM	ENSMUSG00000039519.7	ENSMUST00000035625.7	2166	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	6.79411510058521	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAGTAAATGTTCCAAC	NA	False	NA	NA	False	ATTAAA	-11	NA	18297502	18126113	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_18126918_18133468_18133645_18150686_18150894_18151367_18151959_18157864_18158002_18297251
transcript_57034.nnic	chr3	-	1824	5	NIC	ENSMUSG00000039519.7	novel	2166	6	NA	NA	-20	-186	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	6.28490254498827	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCTAATATGGTTTTATG	NA	False	NA	NA	False	AATAAA	-36	NA	18297522	18126299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_-_18126918_18150686_18150894_18151367_18151959_18157864_18158002_18297251
transcript_57045.known	chr3	-	3673	7	FSM	ENSMUSG00000027599.10	ENSMUST00000029125.10	3673	7	0	0	0	0	multi-exon	TRUE	canonical	3	251	junction_6	16.1761140780679	302	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGTATAATTACTAGACAG	NA	False	NA	NA	False	AATAAA	-23	NA	19217229	19185565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_19188388_19189006_19189082_19189170_19189288_19198493_19198684_19203649_19203742_19211635_19211857_19217073
transcript_57048.known	chr3	+	1574	9	FSM	ENSMUSG00000027601.14	ENSMUST00000029129.10	1574	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	479.101616961371	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCTGAGTCTCTGTGTTG	NA	False	NA	5	True	CATAAA	-16	NA	19242428	19273720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_19242453_19254189_19254332_19260615_19260715_19262654_19262692_19265631_19265748_19269634_19269868_19271343_19271588_19272325_19272486_19273201
transcript_57061.known	chr3	+	2953	8	FSM	ENSMUSG00000027601.14	ENSMUST00000130645.8	2953	8	0	0	0	0	multi-exon	FALSE	canonical	3	831	junction_1	130.277568667669	1352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATTTGTATATTTATCTC	NA	False	NA	50	True	AATAAA	-36	NA	19242273	19274981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_19242453_19254189_19254332_19260615_19260715_19265631_19265748_19269634_19269868_19271343_19271588_19272325_19272486_19273201
transcript_57079.known	chr3	+	1028	1	FSM	ENSMUSG00000048106.7	ENSMUST00000059704.6	1028	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAGAATTGTACCAAGGA	NA	False	NA	NA	False	AAAAAG	-35	NA	19949145	19950173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_19949100_19950200
transcript_5708.known	chr1	-	2048	3	FSM	ENSMUSG00000038633.6	ENSMUST00000035295.6	2048	3	0	0	0	0	multi-exon	FALSE	canonical	3	1138	junction_1	20.5	1299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAAGTGTCACTGGAGAA	NA	False	NA	NA	False	AATAAA	-16	NA	182110369	182103336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_182104459_182106540_182107284_182110186
transcript_57080.known	chr3	-	4016	17	FSM	ENSMUSG00000027615.15	ENSMUST00000012580.13	4016	17	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_7	9.33324032691755	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGAGCATGTGTCCTTCAT	NA	False	NA	NA	False	NA	NA	NA	20089479	20050108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_20051194_20056486_20056578_20057388_20057596_20062978_20063087_20064963_20065153_20065552_20065739_20066860_20067095_20068186_20068368_20069989_20070172_20072974_20073084_20073966_20074122_20076921_20077004_20079894_20080085_20083123_20083210_20083310_20083483_20084477_20084970_20089212
transcript_57082.known	chr3	-	2598	9	FSM	ENSMUSG00000027615.15	ENSMUST00000124808.8	2598	9	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_5	7.98044484975618	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAACCAAATA	NA	False	NA	NA	False	NA	NA	NA	20089466	20069113	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_20070172_20072974_20073084_20073966_20074122_20076921_20077004_20079894_20080085_20083123_20083210_20083310_20083483_20084477_20084970_20089212
transcript_57083.known	chr3	-	3385	17	FSM	ENSMUSG00000027615.15	ENSMUST00000108321.2	3385	17	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_16	13.1101106021269	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTGTCTAATAATTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	20089466	20050330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_20051194_20056486_20056578_20057388_20057596_20062978_20063087_20064963_20065153_20065552_20065739_20066860_20067095_20068186_20068368_20069989_20070172_20072974_20073084_20073966_20074122_20076921_20077004_20079894_20080085_20083123_20083210_20083310_20083483_20084477_20084574_20089212
transcript_57085.known	chr3	+	4955	25	FSM	ENSMUSG00000002428.13	ENSMUST00000002502.12	4955	25	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_12	28.4765680965168	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTGTCACTTAGTGACT	6938	False	NA	16	True	AATAAA	-20	NA	20111974	20172654	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_20112172_20113062_20113271_20117981_20118149_20118729_20118864_20119485_20119584_20121509_20121585_20123129_20123322_20126532_20126629_20128992_20129060_20130654_20130749_20136915_20136996_20137074_20137120_20137913_20137995_20140259_20140358_20145640_20145785_20146841_20146981_20152243_20152380_20153939_20154120_20159804_20159930_20160513_20160693_20162161_20162288_20162918_20163032_20163468_20163650_20167519_20167601_20170735
transcript_5709.known	chr1	-	1405	2	FSM	ENSMUSG00000038633.6	ENSMUST00000132551.2	1405	2	0	0	0	0	multi-exon	FALSE	canonical	3	1179	junction_1	0	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AACAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	182110369	182106061	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_182107284_182110186
transcript_57090.nic	chr3	+	658	4	ISM	ENSMUSG00000002428.13	ENSMUST00000128127.8	3050	21	-23	43884	-14	542	5prime_fragment	FALSE	canonical	3	170	junction_3	23.2999761564017	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAAACGTGGTTTTAGAGC	6924	False	NA	NA	False	AAGAAA	-2	NA	20111960	20118801	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_20112172_20113062_20113271_20117981_20118149_20118729
transcript_57091.known	chr3	-	1698	7	FSM	ENSMUSG00000019528.19	ENSMUST00000178328.8	1698	7	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_2	8.93805845186128	179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCTTGGTTGTTTAAGTA	NA	False	NA	-5	True	AATAAA	-12	NA	20209260	20176250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_20177029_20179421_20179642_20192180_20192308_20204702_20204866_20205116_20205292_20206893_20207030_20209161
transcript_57093.known	chr3	-	1731	1	FSM	ENSMUSG00000106019.2	ENSMUST00000199072.2	1731	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGGGTTTTGTTGTTGTTT	NA	False	NA	NA	False	AGTAAA	-16	NA	22130306	22128575	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_22128600_22130300
transcript_57095.known	chr3	+	8237	17	FSM	ENSMUSG00000027630.14	ENSMUST00000193734.6	8237	17	0	0	0	0	multi-exon	TRUE	canonical	3	32	junction_2	67.0932187333414	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGATGACAATTACTAATGT	NA	False	NA	11	True	ATTAAA	-23	NA	22130815	22270758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_22131119_22143576_22143687_22203105_22203173_22233366_22233470_22242529_22242676_22243931_22244155_22245078_22245212_22245555_22245698_22246183_22246248_22246333_22246432_22247271_22247333_22254483_22254606_22254753_22254829_22257260_22257389_22257990_22258157_22263675_22263778_22264564
transcript_57098.known	chr3	+	4209	16	FSM	ENSMUSG00000027630.14	ENSMUST00000202747.4	4209	16	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_1	26.4420540469575	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAATAATAAAAATAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	22130890	22266915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_22131119_22203105_22203173_22233366_22233470_22242529_22242676_22243931_22244155_22245078_22245212_22245555_22245698_22246183_22246248_22246333_22246432_22247271_22247333_22254483_22254606_22254753_22254829_22257260_22257389_22257990_22258157_22263675_22263778_22264564
transcript_571.known	SIRV6	+	574	8	FSM	SIRV6A	SIRV602	574	8	0	0	0	0	multi-exon	FALSE	canonical	3	8561	junction_3	5767.41567350754	8845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCTGCCTAATTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	1124	11279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV6_+_1187_1468_1535_1640_1736_2780_2829_3106_3165_10724_10819_11031_11109_11205
transcript_5710.known	chr1	+	684	2	FSM	ENSMUSG00000100147.3	ENSMUST00000185216.3	684	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAACTGTTGTCTTTTAAA	3005	False	NA	NA	False	NA	NA	NA	182128398	182130852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_182128764_182130533
transcript_57103.known	chr3	+	444	1	FSM	ENSMUSG00000057036.8	ENSMUST00000077389.8	444	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	68876	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAGCCACACCGGAGGTT	NA	False	NA	NA	False	NA	NA	NA	24387231	24387675	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_24387200_24387700
transcript_57104.known	chr3	-	4086	25	FSM	ENSMUSG00000027699.20	ENSMUST00000108300.8	4086	25	0	0	0	0	multi-exon	FALSE	canonical	3	272	junction_24	111.161098998506	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTATGTGTCCTGTCAT	1827	False	NA	NA	False	AATAAA	-20	NA	27208010	27151370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_27152638_27154976_27155121_27156543_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27202943_27203037_27203141_27203222_27204177_27204330_27207865
transcript_57105.known	chr3	-	3985	24	FSM	ENSMUSG00000027699.20	ENSMUST00000176242.9	3985	24	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_21	183.743194259469	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTTATGTGTCCTGTCA	1834	False	NA	NA	False	AATAAA	-19	NA	27208003	27151371	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_27152638_27154976_27155121_27156543_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27203141_27203222_27204177_27204330_27207865
transcript_5711.known	chr1	-	2676	2	FSM	ENSMUSG00000047539.10	ENSMUST00000193700.2	2676	2	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTGTCAGCAAGGTCATC	NA	False	NA	-1	True	AATAAA	-15	NA	182145952	182142752	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_182144851_182145374
transcript_57110.known	chr3	+	4480	5	FSM	ENSMUSG00000027698.15	ENSMUST00000046515.15	4480	5	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_3	11.2333209693305	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATGCCTCTGGCCCTTCCC	5568	False	NA	10	True	AATAAA	-17	NA	27237113	27299107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_27237365_27276816_27277046_27280221_27280292_27293680_27293853_27295349
transcript_57117.known	chr3	+	669	3	FSM	ENSMUSG00000027698.15	ENSMUST00000129412.8	669	3	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_2	4.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGGTGGTTGGTACAAAA	5607	False	NA	NA	False	NA	NA	NA	27237152	27280449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_27237365_27276816_27277046_27280221
transcript_57119.known	chr3	+	4849	27	FSM	ENSMUSG00000027695.17	ENSMUST00000120834.8	4849	27	0	0	0	0	multi-exon	TRUE	canonical	1	4	junction_2	5.02258214078643	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATGGTGAAATCATTTCAT	8206	False	NA	NA	False	AATAAA	-24	NA	27992843	28187388	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_27992900_28006661_28006812_28078311_28078503_28079361_28079490_28082744_28082891_28083315_28083422_28085385_28085452_28093924_28093984_28095333_28095427_28099092_28099246_28102161_28102312_28103357_28103442_28110611_28110694_28125314_28125426_28130539_28130741_28132352_28132567_28139934_28140064_28141320_28141440_28142794_28142909_28149919_28150031_28153808_28153898_28163883_28163998_28166391_28166442_28174842_28174978_28178721_28178876_28184461_28184580_28185662
transcript_5712.known	chr1	+	4361	18	FSM	ENSMUSG00000026510.11	ENSMUST00000117245.2	4361	18	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	10.65761582562	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTATTTCCTGGTTTTCCTT	NA	False	NA	8	True	AATAAA	-21	NA	182236736	182289997	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_182237016_182256458_182256607_182259123_182259238_182262916_182263000_182264462_182264565_182268401_182268577_182269186_182269369_182269697_182269863_182270197_182270427_182271889_182271998_182272225_182272375_182273838_182274302_182275965_182276745_182280219_182280358_182281262_182281397_182283261_182283429_182286324_182286525_182289251
transcript_57120.nic	chr3	+	933	4	ISM	ENSMUSG00000027692.17	ENSMUST00000162037.9	4276	31	-344	160368	4	11947	5prime_fragment	FALSE	canonical	0	0	junction_2	9.62635271879577	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGCCCATTTGTTTGTG	4060	False	NA	NA	False	AATAAA	-14	NA	28317367	28560230	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_28317849_28413139_28413206_28548115_28548173_28559901
transcript_57126.known	chr3	-	299	2	FSM	ENSMUSG00000091329.3	ENSMUST00000193387.2	299	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTAAGGAATTCTTATTT	8955	False	NA	NA	False	AATAAA	-9	NA	28796389	28792937	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_28793112_28796264
transcript_57127.known	chr3	+	5027	5	FSM	ENSMUSG00000050192.9	ENSMUST00000060500.9	5027	5	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	7.24568837309472	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTGTATGTTCTTAAAAT	NA	False	NA	19	True	AATAAA	-22	NA	28835424	28852995	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_28835563_28836164_28836366_28836876_28836982_28847833_28847966_28848544
transcript_57128.known	chr3	-	232	2	FSM	ENSMUSG00000103827.2	ENSMUST00000193336.2	232	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACACATGGGATGTATTTG	NA	False	NA	NA	False	AATAGA	-10	NA	28859485	28856952	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_28857110_28859410
transcript_57139.known	chr3	+	553	4	FSM	ENSMUSG00000039221.11	ENSMUST00000191667.6	553	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3627.89418564299	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTCAAGATGAAGATGGTT	NA	False	NA	NA	False	NA	NA	NA	28859745	28861443	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_28859979_28860651_28860742_28860885_28861008_28861335
transcript_5714.known	chr1	+	390	2	FSM	ENSMUSG00000102688.2	ENSMUST00000192917.2	390	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCGCAATGTATACAAAGT	NA	False	NA	NA	False	NA	NA	NA	182515294	182515793	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_182515374_182515482
transcript_57142.known	chr3	+	1908	1	FSM	ENSMUSG00000039221.11	ENSMUST00000195728.2	1908	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAACATGTATGGTTCA	NA	False	NA	10	True	AATAAA	-15	NA	28859656	28861564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_28859700_28861600
transcript_57143.known	chr3	+	525	4	FSM	ENSMUSG00000039221.11	ENSMUST00000194649.2	525	4	0	0	0	0	multi-exon	FALSE	canonical	3	3779	junction_1	1855.270390596	54361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGGTTCATCAGTGTGT	NA	False	NA	19	True	AATAAA	-24	NA	28859617	28861573	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_28859693_28860651_28860742_28860885_28861008_28861335
transcript_57144.known	chr3	+	553	3	FSM	ENSMUSG00000039221.11	ENSMUST00000194092.2	553	3	0	0	0	0	multi-exon	FALSE	canonical	3	450	junction_1	3771	1527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAACATGTATGGTTCA	NA	False	NA	10	True	AATAAA	-15	NA	28860606	28861564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_28860742_28860818_28861008_28861335
transcript_57145.known	chr3	+	552	4	FSM	ENSMUSG00000039221.11	ENSMUST00000193168.2	552	4	0	0	0	0	multi-exon	FALSE	canonical	3	450	junction_2	3246.42750659175	7008	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTATGGTTCATCAGTGT	NA	False	NA	17	True	AATAAA	-22	NA	28859658	28861571	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_28859693_28860648_28860742_28860818_28861008_28861335
transcript_57146.known	chr3	+	590	2	FSM	ENSMUSG00000039221.11	ENSMUST00000191691.2	590	2	0	0	0	0	multi-exon	FALSE	canonical	3	7992	junction_1	0	1350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAACATGTATGGTTCAT	NA	False	NA	11	True	AATAAA	-16	NA	28860647	28861565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_28861008_28861335
transcript_57148.known	chr3	-	1961	2	FSM	ENSMUSG00000037737.7	ENSMUST00000047630.7	1961	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGGGGTTTATTTTCAAAA	NA	False	NA	NA	False	ATTAAA	-13	NA	30654088	30651221	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_30652899_30653804
transcript_5715.known	chr1	+	1898	9	FSM	ENSMUSG00000038576.16	ENSMUST00000153348.8	1898	9	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_5	5.55512151082224	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACATCCTGCTAGTCCCAC	NA	False	NA	NA	False	NA	NA	NA	182591576	182722797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_182591962_182592570_182592754_182660627_182660841_182681521_182681696_182685986_182686176_182714904_182715097_182716332_182716478_182719447_182719831_182722763
transcript_57150.known	chr3	+	5555	8	FSM	ENSMUSG00000037730.14	ENSMUST00000192715.6	5555	8	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	33.260873624812	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCACTCACTATTTTGAC	8213	False	NA	NA	False	AATAAA	-16	NA	30656213	30674022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_30656845_30657652_30657950_30661185_30661980_30663133_30663294_30665589_30665769_30666617_30666702_30667700_30667788_30670699
transcript_57152.known	chr3	+	4775	7	FSM	ENSMUSG00000037730.14	ENSMUST00000195396.6	4775	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	75.410911382608	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCACTCACTATTTTGAC	8779	False	NA	NA	False	AATAAA	-16	NA	30656779	30674022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_30656845_30657652_30657820_30661185_30661980_30663133_30663294_30665589_30665769_30667700_30667788_30670699
transcript_57153.nic	chr3	+	1300	2	ISM	ENSMUSG00000037730.14	ENSMUST00000047502.9	3394	7	-572	14196	0	12	5prime_fragment	FALSE	canonical	3	207	junction_1	0	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGCTCTATTTCAATTT	8213	False	NA	NA	False	ATTAAA	-45	NA	30656213	30658321	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_30656845_30657652
transcript_57154.known	chr3	+	1522	1	FSM	ENSMUSG00000037730.14	ENSMUST00000194587.2	1522	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGGCT	8787	False	NA	NA	False	ATTAAA	-33	NA	30656787	30658309	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_30656800_30658300
transcript_57155.known	chr3	+	3474	8	FSM	ENSMUSG00000037730.14	ENSMUST00000195751.2	3474	8	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_2	49.6608908662808	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGACTCAACCCTTTTTA	8792	False	NA	NA	False	AATAAA	-35	NA	30656792	30672650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_30656845_30657652_30657820_30661185_30661980_30663133_30663294_30665589_30665769_30666617_30666702_30667700_30667788_30670699
transcript_57165.known	chr3	-	1891	11	FSM	ENSMUSG00000027702.8	ENSMUST00000029252.8	1891	11	0	0	0	0	multi-exon	TRUE	canonical	3	297	junction_6	40.0710618776194	1073	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTCTTGAGTTTAGAT	NA	False	NA	-18	True	AATAAA	-19	NA	30702018	30678415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_30679052_30684121_30684249_30685430_30685587_30685941_30686097_30688693_30688790_30690390_30690520_30696887_30696972_30697432_30697498_30697596_30697719_30699343_30699465_30701818
transcript_5718.nic	chr1	+	1181	5	ISM	ENSMUSG00000038576.16	ENSMUST00000153348.8	1898	9	157	36428	157	4764	5prime_fragment	FALSE	canonical	3	24	junction_2	4.15331193145904	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACCACAGAGTACTGCAAAG	NA	False	NA	NA	False	AATAAA	-28	NA	182591733	182686369	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_182591962_182592570_182592754_182660627_182660841_182681521_182681696_182685986
transcript_57180.known	chr3	+	2092	6	FSM	ENSMUSG00000027703.17	ENSMUST00000108265.3	2092	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	18.0177690072883	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATGAATTAATGAAAATAA	NA	False	NA	NA	False	AATAAA	-13	NA	30702034	30726448	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_30702410_30704053_30705102_30709785_30709960_30713202_30713342_30714049_30714247_30726289
transcript_57189.nic	chr3	-	784	4	ISM	ENSMUSG00000027702.8	ENSMUST00000029252.8	1891	11	-16	18757	-16	-18757	5prime_fragment	FALSE	canonical	3	353	junction_2	40.185680147148	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTGGTAAAATGGAATTG	NA	False	NA	NA	False	ATTAAA	-26	NA	30702034	30697172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_-_30697498_30697596_30697719_30699343_30699465_30701818
transcript_57190.nnic	chr3	+	569	3	NNC	ENSMUSG00000027703.17	novel	2387	8	NA	NA	10492	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	26	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTTTGTGGGAAGAATG	NA	False	NA	5	True	NA	NA	NA	30712526	30726580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_30712608_30714049_30714247_30726289
transcript_57192.nnic	chr3	+	825	3	NNC	ENSMUSG00000027703.17	novel	2387	8	NA	NA	10794	0	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	6.5	211	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTTTGTGGGAAGAATG	NA	False	NA	5	True	NA	NA	NA	30712828	30726580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_30713166_30714049_30714247_30726289
transcript_57202.known	chr3	-	1586	9	FSM	ENSMUSG00000074653.11	ENSMUST00000126658.8	1586	9	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_7	9.37333318515884	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCGTGCTGCTTTGTAAAC	NA	False	NA	NA	False	NA	NA	NA	30753979	30733206	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_30733533_30735094_30735263_30739007_30739176_30741563_30741732_30743287_30743456_30743998_30744167_30745305_30745450_30749635_30749780_30753847
transcript_57204.nnic	chr3	-	1847	9	NNC	ENSMUSG00000074653.11	novel	1586	9	NA	NA	-75	149	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_7	17.8985858379929	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGGCTCATGATACCTTT	NA	False	NA	-5	True	NA	NA	NA	30754067	30733057	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_30733533_30735094_30735263_30739007_30739176_30741563_30741732_30743287_30743456_30743998_30744167_30745305_30745474_30749635_30749780_30753847
transcript_5721.known	chr1	-	1487	1	FSM	ENSMUSG00000102478.2	ENSMUST00000191852.2	1487	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11041	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAAAAAAGGGGGGTATA	NA	False	NA	NA	False	NA	NA	NA	182988121	182986634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_182986600_182988100
transcript_57212.nic	chr3	-	1193	5	ISM	ENSMUSG00000074653.11	ENSMUST00000108263.2	3284	7	-75	6110	-75	-6110	5prime_fragment	FALSE	canonical	3	40	junction_3	10.4163333279998	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACACAAAAGAAAAGTGTAC	NA	False	NA	NA	False	NA	NA	NA	30754067	30742938	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_-_30743456_30743998_30744167_30745305_30745450_30749635_30749780_30753847
transcript_57216.known	chr3	-	705	2	FSM	ENSMUSG00000074653.11	ENSMUST00000130731.2	705	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAACTGCCTTCAGTTTG	NA	False	NA	-7	True	AGTAAA	-20	NA	30753959	30752270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_30752864_30753847
transcript_57218.known	chr3	-	3284	7	FSM	ENSMUSG00000074653.11	ENSMUST00000108263.2	3284	7	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_5	10.7509689485801	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	30753992	30736828	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_30739176_30741563_30741732_30743287_30743456_30743998_30744167_30745305_30745450_30749635_30749780_30753847
transcript_57219.known	chr3	+	3144	8	FSM	ENSMUSG00000051860.14	ENSMUST00000108262.10	3144	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.27140468220744	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCAGGCTCTTCTCTCTTT	7161	False	NA	NA	False	ATTAAA	-17	NA	30800488	30821323	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_30800537_30805193_30805317_30807248_30807374_30808411_30808491_30810286_30810898_30812474_30812594_30816287_30816399_30819395
transcript_5722.known	chr1	-	3430	14	FSM	ENSMUSG00000046836.14	ENSMUST00000057062.12	3430	14	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_3	13.1918030852137	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCGCTGGATTTATGTGG	NA	False	NA	NA	False	AATAAA	-17	NA	183078536	183057915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_183060003_183061033_183061194_183062363_183062515_183062778_183062861_183064049_183064136_183065696_183065787_183066600_183066707_183067689_183067763_183069304_183069401_183073470_183073568_183074038_183074146_183075897_183076015_183076340_183076429_183078446
transcript_57220.known	chr3	+	1241	1	FSM	ENSMUSG00000051860.14	ENSMUST00000192872.2	1241	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAAAAAAAACTTAA	532	False	NA	NA	False	NA	NA	NA	30810370	30811611	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_30810400_30811600
transcript_57224.known	chr3	+	3967	8	FSM	ENSMUSG00000027706.9	ENSMUST00000029256.9	3967	8	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_4	88.1522338147515	1643	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACGCAGTAGTGATGGATT	NA	False	NA	NA	False	AATAAA	-21	NA	30847023	30875412	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970_30864176_30864593_30864687_30866444_30866506_30868382_30868503_30872648
transcript_57225.known	chr3	+	558	2	FSM	ENSMUSG00000027706.9	ENSMUST00000195072.2	558	2	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	0	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAGACAATTTGCTGTTC	8681	False	NA	-51	True	GGGGCT	-28	NA	30872999	30874181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_30873086_30873709
transcript_57228.nic	chr3	+	1968	5	NIC	ENSMUSG00000037661.15	novel	1977	4	NA	NA	-69	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_4	111.904814463007	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910029	30951339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_+_30910207_30931383_30931482_30944090_30944191_30948277_30948390_30949858
transcript_5723.known	chr1	-	3413	14	FSM	ENSMUSG00000046836.14	ENSMUST00000163528.8	3413	14	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_13	29.2690033348083	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTCGCTGGATTTATGT	NA	False	NA	NA	False	AATAAA	-15	NA	183078800	183057917	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_183060003_183061033_183061194_183062363_183062515_183062778_183062861_183064049_183064136_183065696_183065787_183066600_183066707_183067689_183067763_183069304_183069401_183073470_183073568_183074038_183074146_183075897_183076015_183076340_183076429_183078725
transcript_57237.known	chr3	+	754	5	FSM	ENSMUSG00000037661.15	ENSMUST00000147697.2	754	5	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_4	24.6018292002851	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCATCAGTCTCCGCAGC	NA	False	NA	NA	False	ACTAAA	-45	NA	30910291	30949970	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_30910395_30931383_30931711_30944090_30944191_30948277_30948390_30949858
transcript_57240.known	chr3	+	346	4	FSM	ENSMUSG00000037661.15	ENSMUST00000194979.6	346	4	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_2	25.3026129524645	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCAAAGAACTGCTCTCT	NA	False	NA	NA	False	ACTAAA	-16	NA	30910141	30949941	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_30910207_30931383_30931482_30944090_30944191_30949858
transcript_57242.known	chr3	+	1977	4	FSM	ENSMUSG00000037661.15	ENSMUST00000046748.13	1977	4	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_2	83.6341238171756	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910137	30951339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_30910207_30931383_30931711_30944090_30944191_30949858
transcript_57243.nic	chr3	+	1990	4	NIC	ENSMUSG00000037661.15	novel	2139	4	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	82	junction_1	76.6130247122221	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910083	30951339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_+_30910395_30931383_30931482_30944090_30944191_30949858
transcript_57244.known	chr3	+	2139	4	FSM	ENSMUSG00000037661.15	ENSMUST00000108258.8	2139	4	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_1	77.1895214535122	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910163	30951339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_30910395_30931383_30931711_30944090_30944191_30949858
transcript_57247.known	chr3	+	1689	3	FSM	ENSMUSG00000037661.15	ENSMUST00000166278.7	1689	3	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_2	125	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTTATTTGTTTTTTGT	NA	False	NA	34	True	AATAAA	-19	NA	30910098	30951341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_30910207_30931383_30931482_30949858
transcript_57248.known	chr3	+	1916	3	FSM	ENSMUSG00000037661.15	ENSMUST00000108259.8	1916	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	143	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910098	30951339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_30910207_30931383_30931711_30949858
transcript_57255.known	chr3	+	6578	7	FSM	ENSMUSG00000027660.17	ENSMUST00000118470.8	6578	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	38.1113135725105	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTTTGGTTCAAGTCAT	NA	False	NA	14	True	AATAAA	-16	NA	31149206	31176722	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_31149307_31150851_31152569_31165773_31165872_31167556_31167652_31170964_31171189_31171521_31171747_31172603
transcript_57257.known	chr3	-	7797	6	FSM	ENSMUSG00000027663.13	ENSMUST00000029199.11	7797	6	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_5	21.7568380055559	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTTCGGTTCTGAGTCGGG	NA	False	NA	0	True	AATAAA	-26	NA	32419827	32388940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_32395845_32397482_32397584_32397700_32397868_32399606_32399730_32415038_32415366_32419652
transcript_57260.nnic	chr3	-	1092	5	NNC	ENSMUSG00000027663.13	novel	7797	6	NA	NA	-3	-8258	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_4	48.6261246656568	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGGTATACAAGCCTGAA	NA	False	NA	NA	False	GGGGCT	-11	NA	32419830	32397202	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_32397584_32397700_32397868_32399606_32399730_32415038_32415366_32419736
transcript_57263.known	chr3	+	2211	7	FSM	ENSMUSG00000027667.14	ENSMUST00000193287.6	2211	7	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	65.8012580089131	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGTCATAGTTACCACT	2906	False	NA	112	True	AATATA	-32	NA	32564407	32574982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_32564739_32567149_32567342_32568532_32568604_32569432_32569502_32571177_32571289_32573258_32573394_32573680
transcript_57268.known	chr3	+	1988	7	FSM	ENSMUSG00000027667.14	ENSMUST00000191783.6	1988	7	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	46.6455309280059	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGCAAGCTGAAATACTTT	3182	False	NA	22	True	AATAAA	-22	NA	32564683	32574892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_32564882_32567149_32567342_32568532_32568604_32569432_32569502_32571177_32571289_32573258_32573394_32573680
transcript_57278.known	chr3	+	4562	18	FSM	ENSMUSG00000027668.14	ENSMUST00000091257.11	4562	18	0	0	0	0	multi-exon	FALSE	canonical	3	429	junction_6	42.8432404539521	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTATCTCAGTTAGTGA	NA	False	NA	NA	False	AATAAA	-29	NA	32583613	32633388	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_32583845_32586046_32586166_32588386_32588523_32592418_32592582_32596954_32597080_32598215_32598325_32600736_32600845_32608303_32608458_32609622_32609691_32615613_32615736_32617160_32617288_32617523_32617629_32617941_32618045_32618224_32618455_32622405_32622559_32623636_32623834_32628382_32628518_32631211
transcript_57280.known	chr3	-	5997	10	FSM	ENSMUSG00000027669.15	ENSMUST00000155737.8	5997	10	0	0	0	0	multi-exon	TRUE	canonical	3	60	junction_8	7.61253028131584	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCACTGTACCTTGTTTTA	NA	False	NA	NA	False	AATAAA	-16	NA	32670734	32634480	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_32639376_32641709_32641927_32643857_32644060_32644145_32644213_32645259_32645423_32647306_32647371_32650425_32650533_32652274_32652314_32656193_32656290_32670587
transcript_57288.known	chr3	+	300	2	FSM	ENSMUSG00000102862.2	ENSMUST00000195407.2	300	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTTTTGCTTTTATGTTT	NA	False	NA	NA	False	AATAAA	-13	NA	32665009	32667662	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_32665150_32667502
transcript_57297.known	chr3	+	799	6	FSM	ENSMUSG00000027673.13	ENSMUST00000029217.12	799	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1443.42938864359	679	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTCTTCATGAGGTTCA	NA	False	NA	39	True	AATAAA	-41	NA	32791254	32805395	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_32791380_32799002_32799092_32800596_32800664_32801745_32801939_32802609_32802717_32805177
transcript_57309.known	chr3	+	1457	1	FSM	ENSMUSG00000027671.15	ENSMUST00000194226.2	1457	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	166	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAACCAA	NA	False	NA	NA	False	NA	NA	NA	32762698	32764155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_32762700_32764200
transcript_57310.known	chr3	+	2010	14	FSM	ENSMUSG00000027671.15	ENSMUST00000029214.14	2010	14	0	0	0	0	multi-exon	FALSE	canonical	3	1234	junction_9	101.670310666418	7503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGCTGGATTTGTCTGTG	NA	False	NA	23	True	AATAAA	-20	NA	32762655	32781122	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_32763030_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32772806_32774049_32774112_32774334_32774450_32774583_32774665_32776768_32776865_32779395_32779483_32780670
transcript_57311.known	chr3	+	1079	6	FSM	ENSMUSG00000027673.13	ENSMUST00000127477.8	1079	6	0	0	0	0	multi-exon	FALSE	canonical	3	2813	junction_1	66.9226419084005	21213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATCTTGCTTTACTTTTGG	NA	False	NA	10	True	AATAAA	-24	NA	32791138	32805715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_32791355_32799002_32799092_32800596_32800664_32801876_32801939_32802609_32802717_32805177
transcript_57312.known	chr3	-	3364	7	FSM	ENSMUSG00000037531.9	ENSMUST00000043966.8	3364	7	0	0	0	0	multi-exon	FALSE	canonical	3	685	junction_5	35.1931180141168	2146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTATTCTCAAAAGTTCCT	NA	False	NA	NA	False	TATAAA	-14	NA	32791296	32779545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_32781867_32782580_32782677_32784229_32784361_32785308_32785406_32787737_32787799_32788256_32788409_32790790
transcript_57315.known	chr3	+	796	1	FSM	ENSMUSG00000103423.2	ENSMUST00000195812.2	796	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGTACACTGAGTTTTC	NA	False	NA	NA	False	AAAAAG	-33	NA	33675756	33676552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_33675800_33676600
transcript_57318.known	chr3	+	9661	10	FSM	ENSMUSG00000027677.18	ENSMUST00000099153.10	9661	10	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_6	17.9285275124711	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCCAGCTGTTCCCTCAA	NA	False	NA	NA	False	AATAAA	-24	NA	33853980	33869009	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_33854586_33855104_33855230_33855339_33855540_33857007_33857093_33857223_33857354_33857598_33857755_33858148_33858221_33858569_33858690_33858788_33858912_33860964
transcript_5732.known	chr1	+	4279	10	FSM	ENSMUSG00000042901.11	ENSMUST00000109166.8	4279	10	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_8	45.1526901978029	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACTCTCCTGTGCATTTT	NA	False	NA	NA	False	NA	NA	NA	183078592	183106331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_183079173_183085612_183085683_183087358_183087413_183087819_183087875_183094595_183094660_183094913_183095018_183097514_183097638_183099746_183099870_183103138_183103257_183103343
transcript_57323.known	chr3	-	1557	3	FSM	ENSMUSG00000027676.12	ENSMUST00000197230.2	1557	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	1	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTCTCTCCTGTTCCTT	NA	False	NA	NA	False	AATAAA	-17	NA	33898459	33892142	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_33893374_33895217_33895338_33898253
transcript_57324.known	chr3	+	2684	12	FSM	ENSMUSG00000027677.18	ENSMUST00000108210.9	2684	12	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_10	47.3543002489332	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGTGGGGTAGAATATATG	NA	False	NA	-75	True	AAGAAA	-39	NA	33854399	33864093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_33854586_33855104_33855230_33855339_33855540_33857007_33857093_33857223_33857354_33857598_33857755_33858148_33858221_33858569_33858690_33858788_33858912_33860964_33861083_33861987_33862098_33862834
transcript_57340.known	chr3	-	551	5	FSM	ENSMUSG00000027679.14	ENSMUST00000120805.8	551	5	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_4	1441.31155549381	567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTAAGGATTTCAAGAATT	NA	False	NA	26	True	NA	NA	NA	34135459	34131472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_34131674_34132923_34132995_34133353_34133434_34134232_34134307_34135334
transcript_57344.known	chr3	+	2129	17	FSM	ENSMUSG00000027680.16	ENSMUST00000197694.5	2129	17	0	0	0	0	multi-exon	FALSE	canonical	3	754	junction_15	164.164884719601	2565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATTTTGTTTTCAAAAT	4859	False	NA	20	True	ATTAAA	-23	NA	34074256	34123494	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34122309_34122402_34123065
transcript_57345.known	chr3	+	3014	16	FSM	ENSMUSG00000027680.16	ENSMUST00000200392.5	3014	16	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_15	191.49767622611	1272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGTAAGCAGTTTTTAATA	4859	False	NA	15	True	ATTAAA	-16	NA	34074256	34124471	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34123065
transcript_57346.known	chr3	+	2127	15	FSM	ENSMUSG00000027680.16	ENSMUST00000198051.5	2127	15	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_14	198.096296929405	715	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATTTTGTTTTCAAAAT	4856	False	NA	20	True	ATTAAA	-23	NA	34074253	34123494	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976_34116181_34118267_34118469_34123065
transcript_57347.known	chr3	-	659	6	FSM	ENSMUSG00000027679.14	ENSMUST00000108195.10	659	6	0	0	0	0	multi-exon	FALSE	canonical	3	3089	junction_3	262.703330774469	12844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTCATTGCTGACTTA	NA	False	NA	71	True	TATAAA	-1	NA	34135470	34131427	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_34131674_34132923_34132995_34133353_34133434_34134232_34134307_34134379_34134432_34135334
transcript_57348.known	chr3	-	419	4	FSM	ENSMUSG00000027679.14	ENSMUST00000197111.2	419	4	0	0	0	0	multi-exon	FALSE	canonical	3	3089	junction_3	316.042191276207	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATCAGTGTCTTGGTATA	NA	False	NA	-4	True	AATAAA	-44	NA	34134329	34131502	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_34131674_34132923_34132995_34133353_34133434_34134232
transcript_57349.known	chr3	-	1695	5	FSM	ENSMUSG00000027679.14	ENSMUST00000117223.4	1695	5	0	0	0	0	multi-exon	FALSE	canonical	3	3089	junction_2	271.507366382572	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCATTAGTCTACTTATGA	NA	False	NA	-84	True	AATAAA	-20	NA	34135411	34131582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_34132995_34133353_34133434_34134232_34134307_34134379_34134432_34135334
transcript_57351.known	chr3	+	2057	1	FSM	ENSMUSG00000074637.8	ENSMUST00000099151.6	2057	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5123	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGCCTGAGTCTTTCATT	4607	False	NA	19	True	AATAAA	-24	NA	34704553	34706610	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_34704600_34706600
transcript_57352.known	chr3	-	631	1	FSM	ENSMUSG00000105284.2	ENSMUST00000196779.2	631	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTCGTCCTCAGTTGAG	NA	False	NA	NA	False	ATTAAA	-15	NA	34718438	34717807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_34717800_34718400
transcript_57356.known	chr3	-	675	4	FSM	ENSMUSG00000105153.5	ENSMUST00000198364.2	675	4	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0.471404520791032	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGTTTGTTAAGCTCCTTTA	NA	False	NA	NA	False	ATTAAA	-14	NA	34770811	34763771	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_34764079_34764315_34764508_34768115_34768187_34770706
transcript_5736.nic	chr1	+	1253	7	ISM	ENSMUSG00000042901.11	ENSMUST00000109166.8	4279	10	-10	8501	-10	-1939	5prime_fragment	FALSE	canonical	3	159	junction_6	26.7067407221473	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGATTAGACTCACTTTTGC	NA	False	NA	NA	False	AATAAA	-17	NA	183078582	183097830	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_183079173_183085612_183085683_183087358_183087413_183087819_183087875_183094595_183094660_183094913_183095018_183097514
transcript_57360.nnic	chr3	-	1343	7	NNC	ENSMUSG00000105662.5	novel	3135	19	NA	NA	294	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	14.0564338768172	44	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTATTGGTTAGACTCCAAT	NA	False	NA	NA	False	AATAAA	-15	NA	35691420	35672771	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_35673025_35673834_35673956_35677231_35677418_35678500_35678611_35681522_35681682_35682985_35683124_35691044
transcript_57361.nnic	chr3	-	1157	6	NIC	ENSMUSG00000105662.5	novel	3135	19	NA	NA	294	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	13.8188277360998	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTATTGGTTAGACTCCAAT	NA	False	NA	NA	False	AATAAA	-15	NA	35691420	35672771	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_-_35673025_35673834_35673956_35678500_35678611_35681522_35681682_35682985_35683124_35691044
transcript_57364.known	chr3	+	4868	30	FSM	ENSMUSG00000037400.18	ENSMUST00000029257.15	4868	30	0	0	0	0	multi-exon	FALSE	canonical	2	274	junction_18	53.5097310762941	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTTGTTGCATGTTATC	NA	False	NA	11	True	AATAAA	-17	NA	35808282	35910425	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_35808560_35832173_35832291_35836660_35836751_35838655_35838737_35842235_35842344_35842574_35842704_35843706_35843811_35849907_35849956_35852742_35852808_35854632_35854715_35859882_35860034_35860916_35861115_35863505_35863746_35864269_35864446_35864794_35864864_35866211_35866286_35866361_35866466_35868192_35868375_35874057_35874262_35881093_35881248_35882749_35882853_35885514_35885661_35887069_35887130_35888443_35888572_35889387_35889527_35891107_35891174_35891634_35891739_35893197_35893364_35903582_35903714_35909253
transcript_5737.nic	chr1	-	863	6	NIC	ENSMUSG00000046836.14	novel	816	6	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	47.4189835403502	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTGATTCCATCTGTT	NA	False	NA	NA	False	AATAAA	-31	NA	183078568	183072406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_183072739_183073470_183073568_183074038_183074146_183075897_183076015_183076340_183076429_183078446
transcript_57371.known	chr3	-	4980	7	FSM	ENSMUSG00000027708.15	ENSMUST00000108182.10	4980	7	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_3	19.8445346520284	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCTTTTATTGCTTCCAT	NA	False	NA	0	True	TATAAA	-17	NA	35987621	35946253	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_35949849_35951612_35951710_35951941_35952025_35970368_35970500_35973149_35973319_35975119_35975337_35986933
transcript_5738.known	chr1	-	816	6	FSM	ENSMUSG00000046836.14	ENSMUST00000193326.6	816	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	52.5714751552589	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTGATTCCATCTGTT	NA	False	NA	NA	False	AATAAA	-31	NA	183078800	183072406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_183072739_183073470_183073568_183074038_183074146_183075897_183076015_183076340_183076429_183078725
transcript_57384.nic	chr3	-	1160	6	NIC	ENSMUSG00000027708.15	novel	4980	7	NA	NA	-71	81	combination_of_known_junctions	FALSE	canonical	3	38	junction_3	59.8351067518058	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAACAATTTATAAAAACTTC	NA	False	NA	NA	False	ATTAAA	-18	NA	35987056	35949377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_-_35949849_35951612_35951710_35951941_35952025_35973149_35973319_35975119_35975337_35986933
transcript_57389.known	chr3	-	2934	19	FSM	ENSMUSG00000027709.10	ENSMUST00000199113.5	2934	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	79.4384613131603	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAAAAAAAAAGTCT	NA	False	NA	NA	False	NA	NA	NA	36054758	36013460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_36014279_36015081_36015154_36017733_36017842_36018475_36018630_36022572_36022623_36026626_36026714_36028222_36028440_36029943_36030054_36030809_36030994_36033071_36033200_36037881_36037964_36039130_36039243_36043981_36044115_36044197_36044346_36044845_36044968_36048064_36048161_36049929_36050067_36051673_36051721_36054629
transcript_57390.known	chr3	-	2455	19	FSM	ENSMUSG00000027709.10	ENSMUST00000029259.10	2455	19	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_8	26.6884748788316	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGAGCTGTAGTTTTTTT	NA	False	NA	NA	False	TATAAA	-28	NA	36054827	36013981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_36014279_36015081_36015154_36017733_36017842_36018475_36018614_36022572_36022623_36026626_36026714_36028222_36028440_36029943_36030054_36030809_36030994_36033071_36033200_36037881_36037964_36039130_36039243_36043992_36044115_36044197_36044346_36044845_36044968_36048064_36048161_36049929_36050067_36051673_36051721_36054629
transcript_57391.known	chr3	+	3930	18	FSM	ENSMUSG00000027710.15	ENSMUST00000011492.15	3930	18	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_2	13.4755962948483	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCCTTTTTACCAAGGA	NA	False	NA	5	True	NA	NA	NA	36120127	36147002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_36120420_36123858_36123953_36127655_36127758_36128498_36128606_36129391_36129493_36130124_36130204_36130870_36131046_36132586_36132661_36134369_36134446_36135959_36136031_36136257_36136378_36139562_36139692_36141868_36141949_36142636_36142764_36142963_36143042_36143480_36143610_36144230_36144304_36144979
transcript_57395.nnic	chr3	+	3065	5	NNC	ENSMUSG00000033883.12	novel	6689	4	NA	NA	31	-3394	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	21.6852484422014	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACTAAAAGTATATATTGAG	NA	False	NA	NA	False	AAAAAG	-10	NA	36205196	36221090	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_36205345_36213670_36213798_36216780_36216877_36218204_36220629_36220820
transcript_57396.known	chr3	+	6689	4	FSM	ENSMUSG00000033883.12	ENSMUST00000197653.5	6689	4	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	1.4142135623731	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACTACTATTATTTTATG	NA	False	NA	28	True	AATAAA	-19	NA	36205165	36224491	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_36205345_36213670_36213798_36216780_36216877_36218204
transcript_57400.known	chr3	-	853	3	FSM	ENSMUSG00000058400.14	ENSMUST00000197275.2	853	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATATAATGATTACAGTT	NA	False	NA	NA	False	NA	NA	NA	36276329	36241953	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_36242367_36243600_36243760_36276048
transcript_57402.known	chr3	-	1731	13	FSM	ENSMUSG00000027712.14	ENSMUST00000029266.14	1731	13	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	8.69985632065266	459	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGTAGGTTTGTGTTT	NA	False	NA	3	True	AATAAA	-21	NA	36530043	36503071	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_36503556_36504460_36504584_36504786_36504846_36506335_36506432_36507619_36507714_36511141_36511199_36511607_36511688_36514591_36514683_36516029_36516144_36518116_36518212_36519399_36519485_36529578_36529610_36529721
transcript_5741.known	chr1	+	1932	1	FSM	ENSMUSG00000042901.11	ENSMUST00000192252.2	1932	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAATCAAAACTA	NA	False	NA	NA	False	ATTAAA	-24	NA	183078133	183080065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_183078100_183080100
transcript_57411.known	chr3	+	1617	12	FSM	ENSMUSG00000027714.12	ENSMUST00000029269.12	1617	12	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_11	43.5980892749872	1539	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTGAGAGCCGAATGAGT	NA	False	NA	15	True	AATAAA	-23	NA	36606754	36619876	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_36606901_36607183_36607279_36607954_36608075_36608188_36608292_36608786_36608925_36609630_36609714_36611011_36611145_36615251_36615341_36616166_36616314_36617221_36617407_36619366_36619446_36619577
transcript_57424.known	chr3	-	2965	8	FSM	ENSMUSG00000027715.10	ENSMUST00000029270.10	2965	8	0	0	0	0	multi-exon	FALSE	canonical	3	973	junction_1	54.4767315990441	203	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCATTTGGTGGGCTGTGTG	NA	False	NA	-7	True	AATAAA	-21	NA	36626299	36619013	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_36620432_36620689_36620824_36621148_36621263_36621872_36622081_36622736_36622961_36623128_36623239_36624884_36625129_36625786
transcript_5743.known	chr1	-	6330	28	FSM	ENSMUSG00000056050.16	ENSMUST00000194543.4	6330	28	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_27	39.9558741524534	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGTGTCTGCTGATTCT	4043	False	NA	-1	True	CATAAA	-18	NA	183150894	183107681	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_183108509_183109058_183109201_183110600_183110675_183110777_183110847_183111651_183111790_183111946_183112048_183112158_183112227_183112330_183112367_183112487_183112549_183113679_183113782_183114963_183115103_183115257_183115349_183115436_183115493_183116294_183116407_183116484_183116608_183117373_183117479_183117900_183117973_183119505_183119617_183119709_183119788_183120019_183120109_183120812_183120835_183125674_183125807_183132406_183132550_183135177_183135484_183137604_183140360_183143388_183143476_183146987_183147122_183150737
transcript_57431.known	chr3	-	2687	19	FSM	ENSMUSG00000037325.11	ENSMUST00000108156.9	2687	19	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_12	6.84754619472471	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGTGTCTTTATATATT	NA	False	NA	NA	False	ATTAAA	-21	NA	36667626	36627290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_36627772_36629442_36629567_36629693_36629798_36629891_36630002_36632544_36632710_36636774_36636915_36644800_36644867_36646513_36646589_36648516_36648710_36652414_36652518_36653487_36653573_36656977_36657109_36658554_36658672_36659832_36659906_36661669_36661857_36664328_36664505_36664714_36664778_36666160_36666227_36667398
transcript_57436.known	chr3	-	1288	4	FSM	ENSMUSG00000037325.11	ENSMUST00000129671.2	1288	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	6.97614984548545	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTGATGGCCACTAATG	NA	False	NA	NA	False	NA	NA	NA	36667538	36663485	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_36664505_36664714_36664778_36666160_36666227_36667398
transcript_57447.known	chr3	+	2916	17	FSM	ENSMUSG00000027722.15	ENSMUST00000198968.2	2916	17	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_15	114.842266146876	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGTTTTATCTTGTGCTT	NA	False	NA	11	True	AATAAA	-20	NA	37474460	37633245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_37474650_37478659_37478785_37480237_37480396_37484194_37484254_37485781_37486427_37487286_37487417_37487787_37487845_37490790_37490915_37493249_37493506_37502556_37502712_37505791_37506002_37510923_37510978_37512469_37512550_37518680_37518808_37582306_37582472_37584131_37584169_37632900
transcript_57449.known	chr3	+	2890	16	FSM	ENSMUSG00000027722.15	ENSMUST00000029277.13	2890	16	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	86.3305276249369	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGTTTTATCTTGTGCTT	NA	False	NA	11	True	AATAAA	-20	NA	37474446	37633245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_37474650_37478662_37478785_37480237_37480396_37484194_37484254_37485781_37486427_37487286_37487417_37487787_37487845_37490790_37490915_37493249_37493506_37502556_37502712_37505791_37506002_37510923_37510978_37512469_37512550_37518680_37518808_37582306_37582472_37632900
transcript_57454.known	chr3	-	1064	5	FSM	ENSMUSG00000045031.19	ENSMUST00000102955.11	1064	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	3.41869858279434	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAGTATCTTCTGGTAGT	NA	False	NA	NA	False	AATAAA	-21	NA	37366595	37362770	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_37363331_37363493_37363632_37364085_37364215_37364441_37364589_37366505
transcript_57455.known	chr3	-	1070	5	FSM	ENSMUSG00000050174.16	ENSMUST00000099130.9	1070	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	15.5804364508829	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTGTAGCTCTAATCCT	NA	False	NA	-14	True	AATAAA	-15	NA	37473739	37459134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_37459641_37463656_37463712_37466508_37466565_37470849_37471054_37473490
transcript_57456.known	chr3	-	1264	5	FSM	ENSMUSG00000050174.16	ENSMUST00000146324.8	1264	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	11.0792599030802	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGTTTTTCTCTACTGA	NA	False	NA	62	True	TATAAA	-29	NA	37474335	37459058	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_37459644_37463656_37463712_37466508_37466565_37470849_37471054_37473971
transcript_57459.known	chr3	-	1808	4	FSM	ENSMUSG00000045031.19	ENSMUST00000071400.13	1808	4	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_2	8.9566858950296	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCTCAGTATCTTATGCT	NA	False	NA	NA	False	TATAAA	-26	NA	37366595	37361897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_37363331_37363493_37363632_37364441_37364589_37366505
transcript_5746.known	chr1	+	2384	11	FSM	ENSMUSG00000072258.12	ENSMUST00000192076.3	2384	11	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_7	9.96042167782067	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTAGTAGTATTTTATTC	NA	False	NA	16	True	AATAAA	-27	NA	183170324	183191020	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_183170499_183172260_183172385_183177247_183177418_183179117_183179232_183181756_183181956_183183773_183183905_183185480_183185640_183187077_183187145_183187725_183187850_183189427_183189583_183190053
transcript_57461.known	chr3	-	762	4	FSM	ENSMUSG00000045031.19	ENSMUST00000075537.7	762	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	11.7851130197758	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAACAATCTGAAAATG	NA	False	NA	NA	False	AATAAA	-31	NA	37366569	37362908	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_37363331_37364085_37364215_37364441_37364589_37366505
transcript_57466.nnic	chr3	-	805	3	NIC	ENSMUSG00000045031.19	novel	1808	4	NA	NA	-13	-5	combination_of_known_splicesites	FALSE	canonical	3	6	junction_1	10	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTTTAAGTATCTTCTG	NA	False	NA	NA	False	AATAAA	-16	NA	37366608	37362775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_-_37363331_37364441_37364589_37366505
transcript_57469.known	chr3	-	575	3	FSM	ENSMUSG00000050174.16	ENSMUST00000149449.8	575	3	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGTTCCTTCACTATCAACT	NA	False	NA	NA	False	NA	NA	NA	37473722	37459504	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_37459644_37470849_37471054_37473490
transcript_57471.known	chr3	+	2433	2	FSM	ENSMUSG00000051444.10	ENSMUST00000057975.8	2433	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGCCATTCTGTTTTTT	1251	False	NA	7	True	AATAAA	-19	NA	37366702	37375599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_37366735_37373198
transcript_57472.known	chr3	+	2348	2	FSM	ENSMUSG00000051444.10	ENSMUST00000108121.4	2348	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCATTCTGTTTTTTATT	1253	False	NA	10	True	AATAAA	-22	NA	37366704	37375602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_37366735_37373284
transcript_57473.known	chr3	-	899	2	FSM	ENSMUSG00000050174.16	ENSMUST00000141438.2	899	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTAGCTCTAATCCTCACT	NA	False	NA	-10	True	AATAAA	-19	NA	37474360	37459130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_37459641_37473971
transcript_57477.nnic	chr3	+	2250	2	NIC	ENSMUSG00000037211.13	novel	2481	3	NA	NA	-48	-1	combination_of_known_splicesites	FALSE	canonical	3	26	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCGAGTGCATCTTTTTT	NA	False	NA	NA	False	AATATA	-18	NA	37694047	37698746	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_+_37694255_37696703
transcript_57482.nnic	chr3	+	484	2	Genic_Genomic	ENSMUSG00000100755.2	novel	425	1	NA	NA	-33	64	multi-exon	FALSE	canonical	0	0	junction_1	0	1443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATGGTGGAATAGGATTG	7631	False	NA	NA	False	AATAAA	-30	NA	37768855	37769377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr3_+_37769051_37769088
transcript_57483.nnic	chr3	+	469	2	Genic_Genomic	ENSMUSG00000100755.2	novel	425	1	NA	NA	-33	64	multi-exon	FALSE	canonical	0	0	junction_1	0	2729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATGGTGGAATAGGATTG	7631	False	NA	NA	False	AATAAA	-30	NA	37768855	37769377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr3_+_37769261_37769313
transcript_57484.nnic	chr3	+	473	2	Genic_Genomic	ENSMUSG00000100755.2	novel	425	1	NA	NA	-31	63	multi-exon	FALSE	canonical	0	0	junction_1	0	1889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACATGGTGGAATAGGATT	7633	False	NA	NA	False	AATAAA	-29	NA	37768857	37769376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr3_+_37769141_37769186
transcript_57485.nnic	chr3	+	415	2	Genic_Genomic	ENSMUSG00000100755.2	novel	425	1	NA	NA	-30	64	multi-exon	FALSE	canonical	0	0	junction_1	0	814	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATGGTGGAATAGGATTG	7634	False	NA	NA	False	AATAAA	-30	NA	37768858	37769377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr3_+_37768951_37769054
transcript_57486.nnic	chr3	+	430	2	Genic_Genomic	ENSMUSG00000100755.2	novel	425	1	NA	NA	-30	64	multi-exon	FALSE	canonical	0	0	junction_1	0	914	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATGGTGGAATAGGATTG	7634	False	NA	NA	False	AATAAA	-30	NA	37768858	37769377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr3_+_37768966_37769054
transcript_57487.nnic	chr3	+	413	2	Genic_Genomic	ENSMUSG00000100755.2	novel	425	1	NA	NA	-30	64	multi-exon	TRUE	canonical	0	0	junction_1	0	896	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATGGTGGAATAGGATTG	7634	False	NA	NA	False	AATAAA	-30	NA	37768858	37769377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr3_+_37768966_37769071
transcript_57488.nnic	chr3	+	377	2	Genic_Genomic	ENSMUSG00000100755.2	novel	425	1	NA	NA	-30	64	multi-exon	FALSE	canonical	0	0	junction_1	0	743	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATGGTGGAATAGGATTG	7634	False	NA	NA	False	AATAAA	-30	NA	37768858	37769377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr3_+_37768966_37769107
transcript_5749.nnic	chr1	+	2298	11	NNC	ENSMUSG00000072258.12	novel	2384	11	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_10	22.8624145706441	124	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTAGTAGTATTTTATTC	NA	False	NA	16	True	AATAAA	-27	NA	183170303	183191020	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_183170431_183172260_183172385_183177247_183177418_183179117_183179232_183181756_183181956_183183773_183183905_183185480_183185640_183187077_183187145_183187725_183187850_183189427_183189544_183190053
transcript_57490.nnic	chr3	+	472	2	Genic_Genomic	ENSMUSG00000100755.2	novel	425	1	NA	NA	-30	64	multi-exon	FALSE	canonical	0	0	junction_1	0	1176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATGGTGGAATAGGATTG	7634	False	NA	NA	False	AATAAA	-30	NA	37768858	37769377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr3_+_37769008_37769054
transcript_57491.nnic	chr3	+	433	2	Genic_Genomic	ENSMUSG00000100755.2	novel	425	1	NA	NA	-29	61	multi-exon	FALSE	canonical	0	0	junction_1	0	1464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGACATGGTGGAATAGGA	7635	False	NA	NA	False	AATAAA	-27	NA	37768859	37769374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr3_+_37769092_37769173
transcript_57493.known	chr3	+	425	1	FSM	ENSMUSG00000100755.2	ENSMUST00000116115.3	425	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	299673	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCATAAAATTTGACAATGG	7664	False	NA	NA	False	AAGAAA	-12	NA	37768888	37769313	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_37768900_37769300
transcript_57495.nnic	chr3	+	1032	2	Genic_Genomic	ENSMUSG00000100755.2_ENSMUSG00000097304.2	novel	425	1	NA	NA	-33	48	multi-exon	FALSE	canonical	0	0	junction_1	0	660	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAAAGTTCACTTGTAG	7631	False	NA	NA	False	AATAAA	-29	NA	37768855	37789301	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr3_+_37769384_37788797
transcript_57498.known	chr3	-	480	1	FSM	ENSMUSG00000105359.2	ENSMUST00000071237.7	480	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	69	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATGTACACAAAGAAATAA	NA	False	NA	NA	False	NA	NA	NA	38162071	38161591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_38161600_38162100
transcript_57499.nic	chr3	+	1124	3	ISM	ENSMUSG00000060798.8	ENSMUST00000091186.7	6387	16	-24	40206	-24	9952	5prime_fragment	FALSE	canonical	3	18	junction_2	50.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGCAGCAGTGATGAAAGT	NA	False	NA	NA	False	AATAAA	-21	NA	40594891	40618998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_40595159_40608135_40608684_40618689
transcript_5750.nnic	chr1	+	1511	11	NNC	ENSMUSG00000072258.12	novel	2384	11	NA	NA	-21	-826	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	14.0996453856117	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCTACAGTGTAGTGGTTC	NA	False	NA	NA	False	NA	NA	NA	183170303	183190194	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_183170431_183172260_183172385_183177247_183177418_183179117_183179232_183181756_183181956_183183773_183183905_183185480_183185640_183187077_183187145_183187725_183187850_183189427_183189583_183190053
transcript_57501.nic	chr3	+	1179	2	ISM	ENSMUSG00000060798.8	ENSMUST00000091186.7	6387	16	-24	50157	-24	1	5prime_fragment	FALSE	canonical	3	119	junction_1	0	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTGCACTTGAGAACACC	NA	False	NA	2	True	AATAAA	-18	NA	40594891	40609047	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_40595159_40608135
transcript_57502.known	chr3	+	6387	16	FSM	ENSMUSG00000060798.8	ENSMUST00000091186.7	6387	16	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_15	25.5603860169078	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGCAGTATTATGTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	40594915	40659204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_40595159_40608135_40608684_40618689_40618776_40627000_40627205_40629655_40629775_40633312_40633403_40633961_40634040_40637786_40637977_40642205_40642260_40645125_40645189_40646144_40646367_40646928_40647400_40648590_40648689_40651913_40652104_40654068_40654227_40655631
transcript_57503.known	chr3	+	2128	6	FSM	ENSMUSG00000069041.9	ENSMUST00000091184.9	2128	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	1.93907194296653	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGGAAAAAATAACTTAGC	NA	False	NA	NA	False	AATAAA	-12	NA	40663284	40680527	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_40663657_40670945_40671074_40674920_40675039_40675936_40676092_40677055_40677182_40679298
transcript_57504.known	chr3	+	9479	19	FSM	ENSMUSG00000025757.14	ENSMUST00000204702.3	9479	19	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_16	4.58930587290297	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGAGTTTTGCACACCAG	NA	False	NA	9	True	AATAAA	-25	NA	40699861	40750538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_40700217_40705106_40705165_40707581_40707723_40711432_40711556_40714795_40714896_40715213_40715348_40721243_40721489_40721634_40721712_40722401_40722554_40723183_40723291_40724942_40725077_40726978_40727176_40733766_40733866_40735991_40736130_40738660_40738787_40739051_40739160_40739710_40739831_40741155_40741318_40743635
transcript_57506.known	chr3	+	2769	16	FSM	ENSMUSG00000025758.11	ENSMUST00000167556.7	2769	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	93.9296190417769	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAGTCTCAGAAGTCTAT	8020	False	NA	NA	False	NA	NA	NA	40754688	40770852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_40754719_40755434_40755531_40756219_40756316_40756392_40756508_40759442_40760356_40760921_40761023_40763190_40763544_40764711_40764817_40765096_40765200_40765668_40765819_40766314_40766449_40766528_40766621_40767165_40767311_40767900_40768027_40769416_40769524_40770749
transcript_5751.nnic	chr1	+	2337	11	NNC	ENSMUSG00000072258.12	novel	2384	11	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	14.0996453856117	139	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTAGTAGTATTTTATTC	NA	False	NA	16	True	AATAAA	-27	NA	183170303	183191020	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_183170431_183172260_183172385_183177247_183177418_183179117_183179232_183181756_183181956_183183773_183183905_183185480_183185640_183187077_183187145_183187725_183187850_183189427_183189583_183190053
transcript_57510.known	chr3	+	1599	5	FSM	ENSMUSG00000025758.11	ENSMUST00000203320.2	1599	5	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_3	14.0956553590104	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGACTAATAGCTGCATGTA	7816	False	NA	NA	False	TTTAAA	-26	NA	40754484	40760500	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_40754719_40755434_40755531_40756219_40756316_40756392_40756508_40759442
transcript_57511.known	chr3	+	3403	6	FSM	ENSMUSG00000025758.11	ENSMUST00000204594.3	3403	6	0	0	0	0	multi-exon	FALSE	canonical	3	324	junction_5	17.4745529270422	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	7794	False	NA	NA	False	NA	NA	NA	40754462	40762848	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_40754719_40755434_40755531_40756219_40756316_40756392_40756508_40759442_40760356_40760921
transcript_57513.known	chr3	+	3277	13	FSM	ENSMUSG00000037818.17	ENSMUST00000108077.10	3277	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_6	7.57554545157567	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAACAAACAAAAAAGCA	NA	False	NA	NA	False	NA	NA	NA	40848756	40891572	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_40848879_40859320_40859429_40860306_40860392_40864937_40865039_40871120_40871200_40871306_40871392_40873812_40873841_40877847_40877987_40884571_40884662_40885315_40885418_40887958_40888338_40889301_40889465_40889776
transcript_57516.known	chr3	-	3151	12	FSM	ENSMUSG00000025759.12	ENSMUST00000026859.11	3151	12	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	6.38308715692435	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATATGAAGAGGACCTGAAT	NA	False	NA	16	True	AATAAA	-34	NA	40801320	40772537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_40774156_40776297_40776546_40776629_40776734_40778261_40778397_40781308_40781418_40785058_40785115_40786447_40786593_40788378_40788493_40789603_40789845_40791523_40791568_40793848_40793941_40801075
transcript_57521.known	chr3	+	1021	6	FSM	ENSMUSG00000037818.17	ENSMUST00000203892.2	1021	6	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	3.2	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGCCATGTATGGTGGTA	NA	False	NA	NA	False	NA	NA	NA	40848779	40871855	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_40848879_40859320_40859429_40860306_40860392_40864937_40865039_40871120_40871200_40871306
transcript_57522.known	chr3	-	1032	3	FSM	ENSMUSG00000097583.3	ENSMUST00000181813.2	1032	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAATAAAAGGAGAAAAGG	6729	False	NA	NA	False	NA	NA	NA	40848558	40840331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_40841144_40841989_40842034_40848382
transcript_57523.known	chr3	+	1263	1	FSM	ENSMUSG00000107741.3	ENSMUST00000203124.2	1263	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATATTCTTCCTGTGTTA	472	False	NA	NA	False	AATAAA	-17	NA	40801254	40802517	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_40801300_40802500
transcript_57526.known	chr3	-	3007	3	FSM	ENSMUSG00000049940.8	ENSMUST00000058578.8	3007	3	0	0	0	0	multi-exon	FALSE	canonical	3	569	junction_2	17	189	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTACATTTTTGGTTTT	NA	False	NA	NA	False	AATAAA	-26	NA	41037481	41020760	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_41023160_41024714_41024871_41037029
transcript_5753.nnic	chr1	+	2343	10	NIC	ENSMUSG00000072258.12	novel	2384	11	NA	NA	-26	0	combination_of_known_splicesites	FALSE	canonical	3	6	junction_7	23.4020153189347	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTAGTAGTATTTTATTC	NA	False	NA	16	True	AATAAA	-27	NA	183170298	183191020	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_183170499_183172260_183172385_183177247_183177418_183179117_183179232_183181756_183181956_183183773_183183905_183185480_183185640_183187725_183187850_183189427_183189583_183190053
transcript_57544.nnic	chr3	-	1151	5	Fusion	ENSMUSG00000105260.2_ENSMUSG00000097639.3	novel	305	2	NA	NA	-41	0	multi-exon	FALSE	canonical	2	6	junction_4	31.9482002622996	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCAAGCTCTCCTTCGTGT	NA	False	NA	-10	True	AGTAAA	-16	NA	41447668	41432011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr3_-_41432228_41436231_41436380_41436506_41436880_41437302_41437571_41447522
transcript_57545.nnic	chr3	-	1122	5	Fusion	ENSMUSG00000105260.2_ENSMUSG00000097639.3	novel	305	2	NA	NA	-35	0	multi-exon	FALSE	canonical	3	9	junction_3	60.3116904090741	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCAAGCTCTCCTTCGTGT	NA	False	NA	-10	True	AGTAAA	-16	NA	41447662	41432011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr3_-_41432228_41436231_41436380_41436506_41436880_41440150_41440396_41447522
transcript_57546.nnic	chr3	-	1072	5	Fusion	ENSMUSG00000105260.2_ENSMUSG00000097639.3	novel	305	2	NA	NA	-37	0	multi-exon	FALSE	canonical	0	0	junction_4	33.9806930476705	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCAAGCTCTCCTTCGTGT	NA	False	NA	-10	True	AGTAAA	-16	NA	41447664	41432011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr3_-_41432228_41436231_41436380_41436506_41436880_41440150_41440396_41447574
transcript_57559.nnic	chr3	-	884	4	Fusion	ENSMUSG00000105260.2_ENSMUSG00000097639.3	novel	305	2	NA	NA	-42	0	multi-exon	FALSE	canonical	3	51	junction_3	13.2748718344933	283	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCAAGCTCTCCTTCGTGT	NA	False	NA	-10	True	AGTAAA	-16	NA	41447669	41432011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr3_-_41432228_41436231_41436380_41436506_41436880_41447522
transcript_5756.known	chr1	+	2792	4	FSM	ENSMUSG00000039384.9	ENSMUST00000048655.8	2792	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	4.08248290463863	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTTTGTACGTGCCTGTC	NA	False	NA	NA	False	TATAAA	-24	NA	183766577	183807833	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_183766767_183768997_183769850_183801048_183801421_183806454
transcript_57562.nnic	chr3	-	1252	4	Fusion	ENSMUSG00000105260.2_ENSMUSG00000097639.3	novel	504	2	NA	NA	-42	0	multi-exon	FALSE	canonical	3	17	junction_1	26.5455583227527	99	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCAAGCTCTCCTTCGTGT	NA	False	NA	-10	True	AGTAAA	-16	NA	41447669	41432011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr3_-_41432596_41436231_41436380_41436506_41436880_41447522
transcript_57573.known	chr3	-	2161	2	FSM	ENSMUSG00000097639.3	ENSMUST00000199155.2	2161	2	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	0	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTACCTTGGTCATGGTGT	NA	False	NA	NA	False	NA	NA	NA	41447625	41442113	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_41444172_41447522
transcript_57574.known	chr3	-	986	2	FSM	ENSMUSG00000097639.3	ENSMUST00000181833.2	986	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTGCTCCAAATCCTGAA	NA	False	NA	-3	True	NA	NA	NA	41447627	41443238	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_41444172_41447574
transcript_57583.nnic	chr3	-	779	5	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-18	14038	at_least_one_novel_splicesite	FALSE	non_canonical	1	17	junction_1	30.7123753558724	58	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTTGGTCATGGTGTC	NA	False	NA	1	True	NA	NA	NA	41482927	41461643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_41461800_41464877_41465010_41476693_41476891_41477364_41477565_41482833
transcript_57585.nnic	chr3	-	765	5	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-18	14038	at_least_one_novel_splicesite	FALSE	non_canonical	1	17	junction_1	43.6942501938184	98	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTTGGTCATGGTGTC	NA	False	NA	1	True	NA	NA	NA	41482927	41461643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_41461800_41464877_41465010_41476693_41476891_41477378_41477565_41482833
transcript_57600.nnic	chr3	-	546	3	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_1	5.5	119	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGACTTGTTTAACTATT	NA	False	NA	-2	True	AATAAA	-27	NA	41482927	41476638	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_41476891_41477364_41477565_41482833
transcript_57602.nnic	chr3	-	519	3	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-18	-13	at_least_one_novel_splicesite	FALSE	canonical	3	95	junction_2	22	178	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGGTTGATGTCAATGGAC	NA	False	NA	-15	True	AATAAA	-14	NA	41482927	41476651	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_41476891_41477378_41477565_41482833
transcript_57605.known	chr3	-	643	3	FSM	ENSMUSG00000106223.2	ENSMUST00000199633.2	643	3	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	18	569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGACTTGTTTAACTATT	NA	False	NA	-2	True	AATAAA	-27	NA	41482909	41476638	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_41476891_41477364_41477680_41482833
transcript_57609.known	chr3	+	5481	11	FSM	ENSMUSG00000025764.15	ENSMUST00000026865.15	5481	11	0	0	0	0	multi-exon	FALSE	canonical	3	683	junction_7	54.3710400856927	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCTGTTGAAATCTGCTT	NA	False	NA	19	True	AATAAA	-28	NA	41510165	41571299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_41510255_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904_41559427_41564237_41564356_41567557
transcript_57614.known	chr3	+	4790	11	FSM	ENSMUSG00000025764.15	ENSMUST00000168086.7	4790	11	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	235.78218762239	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	41519288	41570547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_41519439_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904_41559427_41564237_41564356_41567557
transcript_57616.nic	chr3	+	1089	8	NIC	ENSMUSG00000025766.15	novel	3574	7	NA	NA	-2	0	combination_of_known_junctions	TRUE	canonical	2	10	junction_7	11.8648855959121	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTTGTGCTGTGTTTCA	NA	False	NA	12	True	ATTAAA	-22	NA	41697043	41713374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_+_41697125_41699130_41699248_41700982_41701164_41703107_41703169_41708023_41708076_41708158_41708359_41710483_41710565_41713058
transcript_57618.nic	chr3	+	975	7	NIC	ENSMUSG00000025766.15	novel	3574	7	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	2	10	junction_6	13.8132384166623	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTTGTGCTGTGTTTCA	NA	False	NA	12	True	ATTAAA	-22	NA	41697040	41713374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_+_41697125_41700982_41701164_41703107_41703169_41708023_41708076_41708158_41708359_41710483_41710565_41713058
transcript_57619.known	chr3	+	3574	7	FSM	ENSMUSG00000025766.15	ENSMUST00000146165.8	3574	7	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	8.72576007513895	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTTGTGCTGTGTTTCA	NA	False	NA	12	True	ATTAAA	-22	NA	41697052	41713374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_41697125_41699130_41699248_41700982_41701164_41703107_41703169_41708023_41708076_41708158_41708359_41710483
transcript_57625.known	chr3	+	3452	6	FSM	ENSMUSG00000025766.15	ENSMUST00000108065.9	3452	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	11.0199818511647	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGTCTCATATTTTGTGC	NA	False	NA	3	True	ATTAAA	-13	NA	41697048	41713365	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_41697125_41700982_41701164_41703107_41703169_41708023_41708076_41708158_41708359_41710483
transcript_57629.nic	chr3	+	837	6	NIC	ENSMUSG00000025766.15	novel	3574	7	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_4	13.0384048104053	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTTGTGCTGTGTTTCA	NA	False	NA	12	True	ATTAAA	-22	NA	41697043	41713374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_+_41697125_41699130_41699248_41700982_41701164_41703107_41703169_41710483_41710565_41713058
transcript_57632.known	chr3	+	3322	5	FSM	ENSMUSG00000025766.15	ENSMUST00000192193.6	3322	5	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_4	13.4629120178363	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTTGTGCTGTGTTTCA	NA	False	NA	12	True	ATTAAA	-22	NA	41697052	41713374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_41697125_41699130_41699248_41700982_41701164_41703107_41703169_41710483
transcript_57634.known	chr3	-	723	2	FSM	ENSMUSG00000090919.7	ENSMUST00000195436.2	723	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCCGTAAGGATCGGGA	NA	False	NA	NA	False	NA	NA	NA	46402376	46401126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_46401725_46402251
transcript_57638.known	chr3	-	593	2	FSM	ENSMUSG00000037910.3	ENSMUST00000036023.3	593	2	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	0	740	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAAGTTTAGATGTGTCT	NA	False	NA	0	True	AATAAA	-42	NA	48563537	48560166	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_48560355_48563132
transcript_57641.known	chr3	-	9223	12	FSM	ENSMUSG00000027737.11	ENSMUST00000029297.6	9223	12	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_8	2.75740925238238	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGGCGCTTTTTATGAT	8831	False	NA	NA	False	AATAAA	-16	NA	50398060	50319386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_50326816_50332012_50332191_50333483_50333634_50335420_50335518_50336323_50336428_50338492_50338617_50372436_50372482_50378490_50378591_50382099_50382226_50389797_50389914_50393237_50393365_50397433
transcript_57642.known	chr3	-	2514	7	FSM	ENSMUSG00000037174.19	ENSMUST00000108051.8	2514	7	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_6	34.1987654098149	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTACCTAGCACAGTATT	NA	False	NA	NA	False	ATTAAA	-18	NA	51184935	51163085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_51164407_51164845_51165197_51166592_51166786_51168419_51168507_51172289_51172428_51174173_51174288_51184625
transcript_57643.known	chr3	-	2611	7	FSM	ENSMUSG00000037174.19	ENSMUST00000108053.9	2611	7	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_5	57.3626378596925	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTACCTAGCACAGTATT	NA	False	NA	NA	False	ATTAAA	-18	NA	51184996	51163085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_51164407_51164845_51165197_51166592_51166786_51168419_51168507_51172289_51172464_51174173_51174288_51184625
transcript_57649.known	chr3	-	1246	5	FSM	ENSMUSG00000037161.15	ENSMUST00000141156.3	1246	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	85.5847533150619	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTAGTCTTTCTTGTT	NA	False	NA	0	True	AATAAA	-17	NA	51304159	51295832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_51296745_51298646_51298741_51299245_51299350_51303847_51303916_51304091
transcript_57651.known	chr3	-	1409	4	FSM	ENSMUSG00000037161.15	ENSMUST00000108046.8	1409	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	91.1604202613295	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTAGTCTTTCTTGTT	NA	False	NA	0	True	AATAAA	-17	NA	51303947	51295832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_51296745_51298646_51298741_51299245_51299350_51303648
transcript_57653.known	chr3	-	1232	4	FSM	ENSMUSG00000037161.15	ENSMUST00000038154.12	1232	4	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_2	9.84321537348893	854	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTAGTCTTTCTTGTT	NA	False	NA	0	True	AATAAA	-17	NA	51303969	51295832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_51296745_51298646_51298741_51299245_51299350_51303847
transcript_57654.nnic	chr3	-	933	4	Fusion	ENSMUSG00000104241.2_ENSMUSG00000037152.12	novel	1249	4	NA	NA	9	216	multi-exon	FALSE	canonical	2	87	junction_1	2948.32370452545	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGGTATTTTTTATTT	NA	False	NA	NA	False	TTTAAA	-8	NA	51316376	51310048	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr3_-_51310709_51314756_51314834_51315565_51315670_51316284
transcript_57663.known	chr3	-	500	4	FSM	ENSMUSG00000037152.12	ENSMUST00000135602.3	500	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	2769.52864020015	1200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTAGACGGAGTCACTGG	NA	False	NA	-32	True	AATAAA	-18	NA	51316087	51312898	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_51313041_51314756_51314834_51315565_51315670_51315910
transcript_57667.known	chr3	-	315	4	FSM	ENSMUSG00000037152.12	ENSMUST00000193279.2	315	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	2986.95545478818	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCCTCAGTGACGGATGT	NA	False	NA	-136	True	NA	NA	NA	51316385	51313002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_51313036_51314756_51314834_51315565_51315670_51316284
transcript_57669.known	chr3	+	6090	20	FSM	ENSMUSG00000063273.12	ENSMUST00000029303.13	6090	20	0	0	0	0	multi-exon	FALSE	canonical	3	462	junction_18	45.4091281535727	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGTTTCACTTTTCCCTT	NA	False	NA	3	True	AATAAA	-20	NA	51323436	51383406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_51323798_51343635_51343721_51345759_51345865_51349326_51349485_51350156_51350292_51351218_51351373_51354067_51354188_51355761_51355858_51355973_51356081_51358730_51358804_51363254_51363425_51364718_51364872_51366042_51366172_51367367_51367582_51368504_51368699_51370684_51370794_51373014_51373114_51377506_51377651_51378905_51379004_51380020
transcript_57674.known	chr3	+	7480	20	FSM	ENSMUSG00000063273.12	ENSMUST00000193266.6	7480	20	0	0	0	0	multi-exon	FALSE	canonical	3	462	junction_18	45.4091281535727	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCCCTGCTGGCCTCCAA	NA	False	NA	NA	False	NA	NA	NA	51322568	51383928	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_51323798_51343635_51343721_51345759_51345865_51349326_51349485_51350156_51350292_51351218_51351373_51354067_51354188_51355761_51355858_51355973_51356081_51358730_51358804_51363254_51363425_51364718_51364872_51366042_51366172_51367367_51367582_51368504_51368699_51370684_51370794_51373014_51373114_51377506_51377651_51378905_51379004_51380020
transcript_57677.nic	chr3	+	1295	6	ISM	ENSMUSG00000063273.12	ENSMUST00000029303.13	6090	20	-64	31801	-64	293	5prime_fragment	FALSE	canonical	3	512	junction_1	37.1860188780676	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGCTTTTGATTTTTTT	NA	False	NA	NA	False	AATAAA	-18	NA	51323372	51351605	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_51323798_51343635_51343721_51345759_51345865_51349326_51349485_51350156_51350292_51351218
transcript_57681.known	chr3	+	3492	2	FSM	ENSMUSG00000027739.10	ENSMUST00000054387.8	3492	2	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCCAAATCTGATATTTAG	NA	False	NA	NA	False	AAGAAA	-1	NA	51391386	51403653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_51392002_51400776
transcript_57687.known	chr3	-	7411	8	FSM	ENSMUSG00000037111.10	ENSMUST00000037141.9	7411	8	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	3.23879544250132	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTTGTCAGTTTTGTTT	NA	False	NA	0	True	ATTAAA	-15	NA	51468300	51422739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_51428909_51434265_51434424_51437491_51437610_51440395_51440478_51443886_51444077_51450052_51450255_51457655_51457786_51467938
transcript_57692.nnic	chr3	+	1045	5	NNC	ENSMUSG00000074604.10	novel	2803	3	NA	NA	-11984	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	5.40254569624358	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGCTGTGGCTTTGTGG	NA	False	NA	NA	False	AATAAA	-15	NA	51555796	51590096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_51556367_51571931_51572032_51584985_51585057_51589217_51589300_51589874
transcript_57694.known	chr3	+	603	5	FSM	ENSMUSG00000074604.10	ENSMUST00000099106.10	603	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	6.68954408012983	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGCTGTGGCTTTGTGG	8625	False	NA	NA	False	AATAAA	-15	NA	51568599	51590096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_51568728_51571931_51572032_51584985_51585057_51589217_51589300_51589874
transcript_57697.known	chr3	+	351	4	FSM	ENSMUSG00000074604.10	ENSMUST00000162125.8	351	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	6.18241233033047	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAAGCAGATTCCTGAACG	NA	False	NA	NA	False	NA	NA	NA	51579335	51589940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_51579468_51584985_51585057_51589217_51589300_51589874
transcript_57698.known	chr3	+	8665	3	FSM	ENSMUSG00000044167.7	ENSMUST00000053764.7	8665	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTAAAAAAAAAAAAAAGTG	NA	False	NA	NA	False	NA	NA	NA	52175756	52260642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_52176844_52252459_52253812_52254416
transcript_57699.known	chr3	-	3182	19	FSM	ENSMUSG00000027742.14	ENSMUST00000036665.10	3182	19	0	0	0	0	multi-exon	TRUE	canonical	3	106	junction_7	14.5610676585896	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATACATGTCATGTGTGC	NA	False	NA	NA	False	ATTAAA	-20	NA	52924658	52889295	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_52890613_52893821_52893902_52896530_52896585_52897379_52897488_52900175_52900344_52900860_52900993_52903428_52903547_52905677_52905770_52907901_52907967_52909666_52909759_52909833_52909963_52914666_52914761_52916473_52916545_52916893_52916977_52917996_52918109_52920326_52920386_52921235_52921308_52922889_52923034_52924466
transcript_57700.known	chr3	+	2108	4	FSM	ENSMUSG00000048332.14	ENSMUST00000059562.14	2108	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.16024689946929	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTACTGAGTCACCGAGTT	NA	False	NA	NA	False	AATAAA	-17	NA	52948948	53169100	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_52949196_52950539_52951113_53139150_53139250_53167911
transcript_57702.known	chr3	-	580	3	FSM	ENSMUSG00000104968.2	ENSMUST00000197765.2	580	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTATGACCTCTCTTGAAC	NA	False	NA	NA	False	GATAAA	-34	NA	53020832	53017816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_53018100_53019909_53020151_53020776
transcript_57704.known	chr3	-	5047	7	FSM	ENSMUSG00000042997.14	ENSMUST00000056749.14	5047	7	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	5.77350269189626	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGGCTTTATTCATTT	NA	False	NA	NA	False	AATAAA	-17	NA	53370753	53356003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_53360071_53360962_53361076_53363846_53363939_53365905_53366107_53369052_53369201_53369732_53369886_53370480
transcript_57706.known	chr3	-	4885	6	FSM	ENSMUSG00000042997.14	ENSMUST00000130348.2	4885	6	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_4	7.03135833249878	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTTATTGGCTTTATT	NA	False	NA	NA	False	AATAAA	-12	NA	53370744	53356008	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_53360071_53360962_53361076_53363846_53363939_53365905_53366107_53369732_53369886_53370480
transcript_57708.known	chr3	-	640	2	FSM	ENSMUSG00000042997.14	ENSMUST00000153342.2	640	2	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAAAGGAAAAAAAGAAG	NA	False	NA	NA	False	AATAAA	-22	NA	53370718	53369483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_53369886_53370480
transcript_57709.known	chr3	+	1519	7	FSM	ENSMUSG00000049504.13	ENSMUST00000141418.2	1519	7	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	7.95124029458437	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAGGTTTCAAAGAACAAAA	NA	False	NA	NA	False	AATAAA	-15	NA	53371352	53381600	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_53371741_53374522_53374589_53376901_53376971_53377693_53377789_53378844_53378939_53379396_53379508_53380904
transcript_5771.nnic	chr1	-	673	5	NNC	ENSMUSG00000073481.10	novel	633	5	NA	NA	-1662	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	410.378179244462	211	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTGAATGCTACACCC	NA	False	NA	-24	True	AATAAA	-17	NA	184556894	184545888	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685_184554748_184556694
transcript_57710.known	chr3	+	940	1	FSM	ENSMUSG00000049504.13	ENSMUST00000198186.2	940	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	53371227	53372167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_53371200_53372200
transcript_57711.known	chr3	+	4472	13	FSM	ENSMUSG00000049504.13	ENSMUST00000058577.5	4472	13	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_11	9.75071222469871	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAACTATAGAAGTGTTTT	NA	False	NA	18	True	AATAAA	-14	NA	53371086	53389176	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_53371741_53374522_53374589_53376901_53376971_53377693_53377789_53378844_53378939_53379396_53379508_53380904_53380989_53382108_53382188_53382735_53382832_53383077_53383123_53384903_53386588_53386980_53387132_53387932
transcript_57715.known	chr3	-	457	1	FSM	ENSMUSG00000105879.2	ENSMUST00000198872.2	457	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13256	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGACTTCTCATTATTTT	NA	False	NA	NA	False	AAGAAA	-29	NA	53600299	53599842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_53599800_53600300
transcript_57716.known	chr3	-	381	5	FSM	ENSMUSG00000027746.14	ENSMUST00000148338.8	381	5	0	0	0	0	multi-exon	FALSE	canonical	3	324	junction_3	16.1012421881046	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGAACAGGGAAAGCGGCC	NA	False	NA	40	True	AATGAA	-15	NA	53771110	53765242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_53765417_53766662_53766696_53767654_53767695_53768635_53768694_53771034
transcript_5772.known	chr1	-	475	5	FSM	ENSMUSG00000073481.10	ENSMUST00000162866.7	475	5	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_4	387.938461614726	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAATGTGAGGCTGTATAA	NA	False	NA	-92	True	AAGAAA	-18	NA	184559454	184545956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685_184554748_184559384
transcript_57725.nnic	chr3	+	1298	2	Genic_Genomic	ENSMUSG00000069014.5	novel	1488	1	NA	NA	-24	17	multi-exon	FALSE	canonical	3	433	junction_1	0	963	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCAACATGCTTAGTCAT	5416	False	NA	NA	False	NA	NA	NA	54388834	54390363	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr3_+_54389515_54389745
transcript_5773.known	chr1	-	572	5	FSM	ENSMUSG00000073481.10	ENSMUST00000161359.8	572	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	410.378179244462	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCCGCTATTACGTTTTT	NA	False	NA	-10	True	AATAAA	-31	NA	184559679	184545874	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685_184554748_184559594
transcript_57737.known	chr3	+	1488	1	FSM	ENSMUSG00000069014.5	ENSMUST00000091130.5	1488	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6753	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAATGT	5440	False	NA	NA	False	NA	NA	NA	54388858	54390346	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_54388900_54390300
transcript_57738.known	chr3	+	1080	1	FSM	ENSMUSG00000069014.5	ENSMUST00000198699.2	1080	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	111	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAACAGAAACGGCTAC	5462	False	NA	NA	False	NA	NA	NA	54388880	54389960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_54388900_54390000
transcript_57758.known	chr3	+	1866	15	FSM	ENSMUSG00000027751.14	ENSMUST00000200450.2	1866	15	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	151.776554345457	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGTAGAG	NA	False	NA	NA	False	NA	NA	NA	54600278	54620173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_54600303_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512
transcript_57777.known	chr3	+	1968	20	FSM	ENSMUSG00000027751.14	ENSMUST00000170552.6	1968	20	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_19	131.739312801442	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTCTTTGTCAGGGTAAA	NA	False	NA	NA	False	TATAAA	-22	NA	54600525	54624258	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608907_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624058
transcript_57778.known	chr3	-	1300	11	FSM	ENSMUSG00000027752.16	ENSMUST00000029316.16	1300	11	0	0	0	0	multi-exon	FALSE	canonical	3	1645	junction_10	187.140588863026	20174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTAGTCCTTACGTTGTT	NA	False	NA	-12	True	AATAAA	-27	NA	54642814	54636098	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639448_54639532_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
transcript_57779.known	chr3	-	2316	8	FSM	ENSMUSG00000027752.16	ENSMUST00000150923.8	2316	8	0	0	0	0	multi-exon	FALSE	canonical	3	1645	junction_7	192.173603487969	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTCTAGTCCTTACGT	NA	False	NA	-16	True	AATAAA	-23	NA	54642458	54636102	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_54636315_54636614_54636722_54637185_54637307_54638495_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
transcript_5778.known	chr1	-	633	5	FSM	ENSMUSG00000073481.10	ENSMUST00000162261.8	633	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	388.369910652203	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTGAATGCTACACCC	NA	False	NA	-24	True	AATAAA	-17	NA	184559464	184545888	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685_184554748_184559304
transcript_5779.known	chr1	-	3035	2	FSM	ENSMUSG00000039349.6	ENSMUST00000048308.6	3035	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGAGGGCTGTGCCTTCCCT	NA	False	NA	-3	True	AATAAA	-28	NA	184615415	184604122	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_184606625_184614882
transcript_57793.known	chr3	+	2972	10	FSM	ENSMUSG00000036632.10	ENSMUST00000141191.8	2972	10	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	150.752270011367	2404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTGCTGTGGTCATGG	NA	False	NA	NA	False	NA	NA	NA	54642979	54658739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_54643071_54646202_54646373_54646682_54646730_54648799_54648869_54649567_54649661_54652018_54652133_54652527_54652588_54653886_54654039_54656028_54656115_54656649
transcript_57806.known	chr3	+	940	7	FSM	ENSMUSG00000036632.10	ENSMUST00000155273.2	940	7	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	177.019459068456	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATCAGAAAAAAAAAAGC	NA	False	NA	NA	False	AGTAAA	-7	NA	54642987	54652891	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_54643071_54646202_54646373_54646682_54646730_54648799_54648869_54649567_54649661_54652018_54652133_54652527
transcript_5781.known	chr1	+	4418	35	FSM	ENSMUSG00000039318.13	ENSMUST00000194740.6	4418	35	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_25	17.4221203306776	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAATGCAGATGCTTTATT	NA	False	NA	88	True	TATAAA	-19	NA	184936313	185016382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_184936551_184954041_184954107_184965157_184965282_184966317_184966400_184967500_184967549_184967627_184967704_184968156_184968259_184970975_184971076_184972858_184972958_184978832_184978982_184980040_184980121_184980209_184980300_184982076_184982217_184983129_184983347_184983860_184984005_184984227_184984311_184984512_184984578_184987941_184988033_184990694_184990823_184991510_184991725_184992597_184992696_184993526_184993633_184994875_184995037_184995827_184996057_184999097_184999212_184999369_184999477_185003630_185003698_185004768_185004840_185008108_185008145_185009343_185009419_185010344_185010564_185013847_185013938_185014494_185014708_185015578_185015738_185016043
transcript_57810.nnic	chr3	+	836	4	NNC	ENSMUSG00000027796.3	novel	5368	6	NA	NA	30679	-3640	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	6.84754619472471	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCACGTTTATATCACCGTT	587	False	NA	NA	False	AATACA	-17	NA	54693681	54705038	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_54693779_54696606_54696829_54701652_54701910_54704778
transcript_57827.nnic	chr3	+	486	3	Antisense	novelGene_ENSMUSG00000056306.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	2	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTGGGCCATTCTCGTGTG	NA	False	NA	6	True	GATAAA	-18	NA	54794176	54807704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr3_+_54794309_54794833_54794945_54807461
transcript_5783.known	chr1	+	7052	35	FSM	ENSMUSG00000039318.13	ENSMUST00000069652.8	7052	35	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_28	11.2668558845177	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCAGTGTCTGTCTCTGA	NA	False	NA	NA	False	AATAAA	-34	NA	184936313	185018956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_184936551_184954041_184954107_184965157_184965282_184966317_184966400_184967500_184967549_184967627_184967704_184968156_184968259_184970975_184971076_184972858_184972958_184978832_184978982_184980040_184980121_184980209_184980300_184982076_184982217_184983129_184983347_184983860_184984005_184984227_184984311_184984512_184984578_184987941_184988033_184990694_184990823_184991510_184991725_184992597_184992696_184993526_184993633_184994875_184995037_184995827_184996057_184999097_184999272_184999369_184999477_185003630_185003698_185004768_185004840_185008108_185008145_185009343_185009419_185010344_185010564_185013847_185013938_185014494_185014708_185015578_185015738_185016043
transcript_57831.known	chr3	-	1564	9	FSM	ENSMUSG00000027793.7	ENSMUST00000198320.5	1564	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	2.95803989154981	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGTGTGTTGGGGCTCT	NA	False	NA	NA	False	AATAAA	-13	NA	54962463	54952897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_54953130_54953387_54953522_54954629_54954744_54955828_54956034_54957098_54957323_54957966_54958092_54958269_54958517_54961753_54961943_54962369
transcript_57832.known	chr3	-	1560	9	FSM	ENSMUSG00000027793.7	ENSMUST00000029368.7	1560	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	3.25720355519885	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTGTTGGGGCTCTTT	NA	False	NA	NA	False	AATAAA	-15	NA	54962476	54952895	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_54953130_54953387_54953522_54954629_54954744_54955828_54956034_54957098_54957323_54957966_54958092_54958269_54958517_54961753_54961940_54962385
transcript_57833.known	chr3	-	1719	9	FSM	ENSMUSG00000027793.7	ENSMUST00000197238.5	1719	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	3.25720355519885	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTGTGTGTTGGGGCTC	NA	False	NA	NA	False	AATAAA	-12	NA	54962922	54952898	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_54953130_54953387_54953522_54954629_54954744_54955828_54956034_54957098_54957323_54957966_54958092_54958269_54958517_54961753_54961943_54962672
transcript_57834.nic	chr3	-	1436	8	NIC	ENSMUSG00000027793.7	novel	1564	9	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	3.0572763655761	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGGGGCTCTTTACTAGT	NA	False	NA	NA	False	AATAAA	-21	NA	54962464	54952889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_-_54953130_54954629_54954744_54955828_54956034_54957098_54957323_54957966_54958092_54958269_54958517_54961753_54961940_54962369
transcript_57838.known	chr3	+	3770	9	FSM	ENSMUSG00000036580.16	ENSMUST00000044116.14	3770	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	65.469339197826	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGATGTATTCACTGGAC	NA	False	NA	21	True	AATAAA	-22	NA	55019528	55044743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_55019639_55024404_55025217_55029020_55029219_55032175_55032347_55033954_55034076_55034915_55035111_55035637_55035797_55035919_55036011_55042830
transcript_5784.known	chr1	-	5471	23	FSM	ENSMUSG00000026618.12	ENSMUST00000027921.11	5471	23	0	0	0	0	multi-exon	TRUE	canonical	3	288	junction_20	32.2887284275964	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTCTTTGCTTTGTTCT	NA	False	NA	NA	False	AATAAA	-17	NA	185061593	185016922	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_185019389_185020236_185020382_185021549_185021741_185022682_185022829_185023515_185023623_185026940_185027073_185027751_185027878_185028607_185028711_185029669_185029779_185034904_185034999_185035495_185035599_185048090_185048252_185050003_185050156_185050760_185050852_185053033_185053204_185054596_185054713_185055017_185055109_185055189_185055300_185055382_185055433_185055863_185056013_185057699_185057860_185059816_185059940_185061217
transcript_57841.known	chr3	+	3567	8	FSM	ENSMUSG00000036580.16	ENSMUST00000107971.9	3567	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	57.8710741604975	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGCTGGGCCTCAGATGT	NA	False	NA	10	True	AATAAA	-11	NA	55019549	55044732	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_55019639_55024404_55025217_55029020_55029219_55033954_55034076_55034915_55035111_55035637_55035797_55035919_55036011_55042830
transcript_57846.known	chr3	+	2364	11	FSM	ENSMUSG00000027794.5	ENSMUST00000029369.5	2364	11	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_8	29.6317397396778	342	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTGTGCAAGGAATCTGAT	NA	False	NA	20	True	AATAAA	-22	NA	55089448	55117378	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_55089536_55096541_55096757_55097730_55097793_55097874_55097980_55099659_55099757_55102493_55102605_55104147_55104296_55104418_55104508_55111754_55111877_55115013_55115271_55116307
transcript_57853.known	chr3	-	4697	7	FSM	ENSMUSG00000027803.15	ENSMUST00000029380.14	4697	7	0	0	0	0	multi-exon	TRUE	canonical	3	192	junction_3	19.06494747494	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGGCCTTTGTTTCTGTC	NA	False	NA	-6	True	AATAAA	-17	NA	57483249	57363069	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_57366532_57369939_57370053_57370863_57370986_57384777_57384978_57409152_57409290_57482243_57482679_57483021
transcript_57854.known	chr3	-	4533	7	FSM	ENSMUSG00000027803.15	ENSMUST00000120977.2	4533	7	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_6	83.079112229783	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCAGTATGTTGTACATA	NA	False	NA	NA	False	AATAAA	-24	NA	57483331	57363202	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_57366532_57369939_57370053_57370863_57370986_57384777_57384978_57409152_57409290_57482243_57482679_57483134
transcript_57861.known	chr3	-	892	4	FSM	ENSMUSG00000036513.16	ENSMUST00000041954.10	892	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	244.439949453621	334	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCTAGACAGTTC	NA	False	NA	-11	True	AATAAA	-19	NA	57559129	57553779	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_57554298_57557462_57557637_57558842_57558921_57559007
transcript_57862.nnic	chr3	-	479	2	Genic_Genomic	ENSMUSG00000104623.2	novel	477	1	NA	NA	-28	78	multi-exon	FALSE	canonical	0	0	junction_1	0	559	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAGAAGAAATAAATGGG	NA	False	NA	NA	False	NA	NA	NA	57625738	57625155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr3_-_57625503_57625606
transcript_57863.known	chr3	-	477	1	FSM	ENSMUSG00000104623.2	ENSMUST00000197077.2	477	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1812	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGACTCTGGCCAATGCCC	NA	False	NA	NA	False	NA	NA	NA	57625710	57625233	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_57625200_57625700
transcript_57870.known	chr3	+	2678	10	FSM	ENSMUSG00000036503.14	ENSMUST00000041826.14	2678	10	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_9	27.8053196793192	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTCTTTGTTGAGTTTT	NA	False	NA	NA	False	AAGAAA	-42	NA	57643482	57742652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_57643622_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703707_57709867_57709959_57714442_57714549_57727927_57728022_57740384_57740466_57740906
transcript_57871.known	chr3	+	3244	10	FSM	ENSMUSG00000036503.14	ENSMUST00000197205.5	3244	10	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_5	52.0948802015119	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTATATGAGCATTTCATT	NA	False	NA	NA	False	AATAAA	-25	NA	57643533	57742540	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_57643622_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703707_57709138_57709959_57714442_57714549_57727927_57728022_57740384_57740466_57740906
transcript_57872.known	chr3	+	1062	9	FSM	ENSMUSG00000036503.14	ENSMUST00000199041.2	1062	9	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_8	24.8281594162757	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTCTCTTCATACAATAGT	NA	False	NA	NA	False	AATAAA	-23	NA	57643540	57740653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_57643622_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703707_57709867_57709959_57714442_57714549_57727927_57728022_57740384
transcript_57873.known	chr3	+	2027	9	FSM	ENSMUSG00000036503.14	ENSMUST00000198214.5	2027	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	54.9816730829465	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGCTTTTAATTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	57643505	57733721	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_57643622_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703707_57709867_57709959_57714442_57714549_57727927_57728022_57732522
transcript_57875.known	chr3	-	2342	3	FSM	ENSMUSG00000027805.17	ENSMUST00000066882.10	2342	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	7	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGACTCCTGTTTTTATTA	NA	False	NA	4	True	AATAAA	-23	NA	57755500	57749315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_57750736_57752594_57752788_57754771
transcript_57876.known	chr3	+	2299	14	FSM	ENSMUSG00000027810.15	ENSMUST00000029387.15	2299	14	0	0	0	0	multi-exon	TRUE	canonical	3	611	junction_6	73.3195163601748	1357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCCTTCAAGTTTGTC	NA	False	NA	5	True	AATAAA	-16	NA	58433241	58464922	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_58433508_58438507_58438578_58444954_58445030_58446948_58447068_58448460_58448561_58449054_58449138_58452415_58452490_58452648_58452794_58452920_58453038_58455813_58456386_58459989_58460104_58462955_58463073_58463993_58464060_58464541
transcript_5788.known	chr1	-	974	3	FSM	ENSMUSG00000103613.2	ENSMUST00000193245.2	974	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACGTCTGACCCTTCTGT	NA	False	NA	NA	False	AATAAA	-17	NA	184980086	184975909	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_184976535_184977896_184978072_184979912
transcript_57880.known	chr3	+	1945	13	FSM	ENSMUSG00000027810.15	ENSMUST00000154219.8	1945	13	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_3	220.750408958977	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCCTTCAAGTTTGTC	NA	False	NA	5	True	AATAAA	-16	NA	58433476	58464922	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_58433508_58438507_58438578_58444954_58445030_58448460_58448561_58449054_58449138_58452415_58452490_58452648_58452794_58452920_58453038_58455813_58456386_58459989_58460104_58462955_58463073_58463993_58464060_58464541
transcript_57882.known	chr3	+	1035	9	FSM	ENSMUSG00000027810.15	ENSMUST00000137469.8	1035	9	0	0	0	0	multi-exon	FALSE	canonical	3	611	junction_6	72.4291679850045	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	58433462	58453244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_58433508_58438507_58438578_58444954_58445030_58446948_58447068_58448460_58448561_58449054_58449138_58452415_58452490_58452648_58452794_58452920
transcript_57887.known	chr3	-	4611	3	FSM	ENSMUSG00000027808.9	ENSMUST00000029385.9	4611	3	0	0	0	0	multi-exon	FALSE	canonical	3	847	junction_1	36.5	638	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTAGGAACTGGTGGTGT	NA	False	NA	NA	False	AATAAA	-17	NA	58433313	58427237	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_58431290_58432503_58432580_58432830
transcript_5789.nic	chr1	-	421	2	ISM	ENSMUSG00000026618.12	ENSMUST00000153211.2	3292	4	1	6514	1	-6514	5prime_fragment	FALSE	canonical	3	317	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGACGGAATTTTGCCTT	NA	False	NA	NA	False	AAGAAA	-3	NA	185061592	185059893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_185059940_185061217
transcript_57891.known	chr3	+	3157	6	FSM	ENSMUSG00000075700.11	ENSMUST00000107924.3	3157	6	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_4	12.1061967603372	858	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCTGCTTTGTGAAAATG	NA	False	NA	15	True	AATAAA	-18	NA	58484056	58500554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_58484295_58492651_58492763_58493372_58493500_58495866_58495955_58497587_58497742_58498115
transcript_57893.nnic	chr3	-	730	3	NNC	ENSMUSG00000070471.4	novel	2195	14	NA	NA	17912	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.5	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGGGCCTTTGTTGTTTTGC	NA	False	NA	NA	False	AATAAA	-24	NA	58526716	58523720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_58523995_58526122_58526352_58526489
transcript_57894.nnic	chr3	+	450	3	NNC	ENSMUSG00000097725.5	novel	938	9	NA	NA	-86	-82300	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGGTTTTTTAAAGATTTA	4206	False	NA	NA	False	NA	NA	NA	58599923	58613645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_58600043_58603474_58603552_58613391
transcript_57895.known	chr3	+	636	1	FSM	ENSMUSG00000059776.8	ENSMUST00000079761.8	636	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	438	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTGGAGAGTTGCA	NA	False	NA	NA	False	AAAAAG	-44	NA	58894590	58895226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_58894600_58895200
transcript_57896.known	chr3	+	3026	2	FSM	ENSMUSG00000027763.14	ENSMUST00000195839.6	3026	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAGAAAAAAAACCCAATA	NA	False	NA	NA	False	NA	NA	NA	60408685	60439043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_60408845_60436176
transcript_57897.known	chr3	+	732	2	FSM	ENSMUSG00000027763.14	ENSMUST00000192623.2	732	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACTCCATCGCAAATCAG	NA	False	NA	NA	False	NA	NA	NA	60435548	60436512	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_60435945_60436176
transcript_57898.known	chr3	+	453	2	FSM	ENSMUSG00000027694.10	ENSMUST00000099086.4	453	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCAAGGCCCCGGCCTCC	NA	False	NA	NA	False	NA	NA	NA	60784445	60785008	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_60784476_60784585
transcript_57899.known	chr3	+	182	2	FSM	ENSMUSG00000027694.10	ENSMUST00000193411.2	182	2	0	0	0	0	multi-exon	FALSE	canonical	3	1840	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAATCTATGAAAACCGAAT	NA	False	NA	NA	False	NA	NA	NA	60784434	60784735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_60784468_60784586
transcript_57901.known	chr3	-	5620	25	FSM	ENSMUSG00000027770.6	ENSMUST00000029336.6	5620	25	0	0	0	0	multi-exon	FALSE	canonical	3	420	junction_17	54.5870704827516	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGTTGTCATGTTTTAAC	NA	False	NA	0	True	NA	NA	NA	62414425	62375433	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_62378169_62378742_62378896_62379419_62379541_62380148_62380240_62380350_62380451_62382690_62382775_62384703_62384791_62384926_62385101_62386740_62386840_62388222_62388341_62391551_62391696_62392375_62392441_62394430_62394487_62395550_62395639_62395965_62396069_62396318_62396460_62399771_62399854_62401150_62401318_62401764_62401840_62402878_62402959_62404149_62404321_62405510_62405550_62408254_62408490_62409394_62409520_62414138
transcript_57906.known	chr3	-	427	1	FSM	ENSMUSG00000063001.11	ENSMUST00000077976.9	427	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	155	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAATTTGACAATGGAAAC	NA	False	NA	NA	False	AAGAAA	-16	NA	62831654	62831227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_62831200_62831700
transcript_57909.nic	chr3	+	2680	23	NIC	ENSMUSG00000027820.13	novel	3345	23	NA	NA	-73	-588	combination_of_known_junctions	FALSE	canonical	3	270	junction_1	51.6275000395194	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGAGGGAGCCTACGATCT	NA	False	NA	NA	False	ATTAAA	-17	NA	63202795	63287929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_+_63203037_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
transcript_5791.known	chr1	+	1226	10	FSM	ENSMUSG00000026617.17	ENSMUST00000210277.2	1226	10	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_7	59.2152382790481	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTAATACGCTTAAGACTT	NA	False	NA	3	True	ATTAAA	-17	NA	185064368	185088978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_185064461_185070302_185070430_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185082033_185082079_185084378_185084577_185086153_185086260_185088674
transcript_57910.nic	chr3	+	3268	23	NIC	ENSMUSG00000027820.13	novel	3345	23	NA	NA	-73	0	combination_of_known_junctions	FALSE	canonical	3	270	junction_1	51.6275000395194	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCATTGAATATTGAAGTT	NA	False	NA	5	True	AATAAA	-15	NA	63202795	63288517	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_+_63203037_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
transcript_57911.nic	chr3	+	3595	23	NIC	ENSMUSG00000027820.13	novel	3345	23	NA	NA	-73	-200	combination_of_known_junctions	FALSE	canonical	3	270	junction_1	51.6275000395194	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGGCCTGTGTGCACGCCA	NA	False	NA	10	True	AATAAA	-21	NA	63202795	63288844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_+_63203037_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
transcript_57912.known	chr3	+	3782	23	FSM	ENSMUSG00000027820.13	ENSMUST00000029400.7	3782	23	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_1	72.8286793023574	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTACAGTCCTTATTTT	NA	False	NA	11	True	TATAAA	-15	NA	63203515	63289044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_63203744_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
transcript_57923.nic	chr3	+	1098	9	NIC	ENSMUSG00000027820.13	novel	3345	23	NA	NA	-73	-4477	combination_of_known_junctions	FALSE	canonical	3	270	junction_1	55.9797675504284	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCCAATGTAACACATATT	NA	False	NA	NA	False	AATAAA	-23	NA	63202795	63247563	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_+_63203037_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436
transcript_57924.nic	chr3	+	1224	9	NIC	ENSMUSG00000027820.13	novel	3345	23	NA	NA	-73	-4351	combination_of_known_junctions	FALSE	canonical	3	270	junction_1	55.9797675504284	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCATAGGCTAGTAATGGAT	NA	False	NA	NA	False	AATAAA	-30	NA	63202795	63247689	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_+_63203037_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436
transcript_57926.nic	chr3	+	1104	9	ISM	ENSMUSG00000027820.13	ENSMUST00000029400.7	3782	23	107	41355	107	-4351	5prime_fragment	FALSE	canonical	3	117	junction_1	104.818593293366	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCATAGGCTAGTAATGGAT	NA	False	NA	NA	False	AATAAA	-30	NA	63203622	63247689	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_63203744_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436
transcript_57933.known	chr3	-	747	5	FSM	ENSMUSG00000036834.17	ENSMUST00000159188.2	747	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	4.9180788932265	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATCTGATGGCTGGCAT	NA	False	NA	NA	False	NA	NA	NA	63806863	63688797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_63688977_63691411_63691559_63778076_63778196_63793348_63793435_63806647
transcript_57934.nnic	chr3	-	510	2	NNC	ENSMUSG00000036834.17	novel	6010	23	NA	NA	9	-29057	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCTCTTCTGTCATCAT	NA	False	NA	NA	False	AATAAA	-15	NA	63806884	63805927	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_63806201_63806647
transcript_57935.known	chr3	-	3150	6	FSM	ENSMUSG00000027822.17	ENSMUST00000029402.15	3150	6	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_5	11.3666177907063	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAAAGCTGTTTTTTTAA	NA	False	NA	NA	False	AATAAA	-24	NA	63872189	63849750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_63850838_63851986_63852203_63854989_63855108_63855492_63855678_63861234_63861426_63870836
transcript_57941.known	chr3	+	8105	16	FSM	ENSMUSG00000027823.10	ENSMUST00000029405.8	8105	16	0	0	0	0	multi-exon	FALSE	canonical	3	954	junction_10	99.4709114375767	1371	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCATCTTGTGGTTTTGT	NA	False	NA	NA	False	AATAAA	-22	NA	63883526	63930000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_63883732_63887556_63887739_63889831_63889947_63893020_63893119_63895079_63895184_63897575_63897770_63897937_63898104_63900611_63900764_63901220_63901395_63904227_63904334_63906022_63906139_63908933_63909060_63918977_63919094_63921674_63921806_63922845_63923019_63924053
transcript_57946.known	chr3	-	2957	5	FSM	ENSMUSG00000027828.13	ENSMUST00000029414.12	2957	5	0	0	0	0	multi-exon	FALSE	canonical	3	545	junction_4	56.4225132371822	822	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTTTTCTGTAATTCT	2716	False	NA	-1	True	ATTAAA	-20	NA	65300044	65287075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_65289456_65290412_65290545_65295152_65295252_65298745_65298873_65299825
transcript_5795.known	chr1	+	2200	9	FSM	ENSMUSG00000026617.17	ENSMUST00000027916.13	2200	9	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_6	39.6957176531676	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATTGCCTTTATTCCTTC	NA	False	NA	NA	False	ATTAAA	-21	NA	185064345	185089974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_185064461_185070302_185070430_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185084378_185084577_185086153_185086260_185088674
transcript_57950.known	chr3	-	1469	4	FSM	ENSMUSG00000027828.13	ENSMUST00000119896.2	1469	4	0	0	0	0	multi-exon	FALSE	canonical	3	545	junction_3	65.0281990114033	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTTGTCCATAAGTGCT	2786	False	NA	NA	False	ATTAAA	-14	NA	65299974	65289450	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_65290545_65295152_65295252_65298745_65298873_65299825
transcript_57951.known	chr3	+	4191	6	FSM	ENSMUSG00000034640.10	ENSMUST00000047906.10	4191	6	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_5	12.4835892274618	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGATTTCAGTGTAATGAAA	NA	False	NA	NA	False	ATTAAA	-16	NA	65435830	65462939	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_65436054_65438644_65439606_65453627_65453797_65454945_65455107_65459956_65460233_65460538
transcript_57954.known	chr3	+	609	4	FSM	ENSMUSG00000074579.15	ENSMUST00000107848.8	609	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	4.32049379893857	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGCCAGCTATATATTTCT	NA	False	NA	NA	False	NA	NA	NA	65573655	65591645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_65573733_65576510_65576600_65576924_65577035_65591312
transcript_57955.known	chr3	+	2461	3	FSM	ENSMUSG00000074579.15	ENSMUST00000099075.4	2461	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	1	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTGTGTGTAATTATTG	NA	False	NA	NA	False	AATAAA	-14	NA	65573648	65593600	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_65573733_65576510_65576600_65591312
transcript_57956.known	chr3	-	2169	11	FSM	ENSMUSG00000027829.16	ENSMUST00000029416.14	2169	11	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_8	39.2388837761728	172	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTTCAAATATCTTATTT	NA	False	NA	NA	False	AATAAA	-23	NA	65865670	65853571	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_65854370_65855111_65855211_65855317_65855430_65855682_65855825_65855916_65856022_65856111_65856212_65857900_65857966_65858854_65858976_65864273_65864384_65864921_65864997_65865228
transcript_57965.known	chr3	+	3224	10	FSM	ENSMUSG00000034544.18	ENSMUST00000065074.14	3224	10	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_4	31.3821526695165	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGTGACTGCTTCCTCC	NA	False	NA	15	True	AATAAA	-15	NA	66893004	67265728	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_66893140_66901849_66902046_66903797_66903924_66989868_66990043_67088161_67088199_67113758_67113811_67197679_67197749_67257241_67257349_67262806_67262960_67263553
transcript_57971.known	chr3	+	3213	10	FSM	ENSMUSG00000034544.18	ENSMUST00000161726.2	3213	10	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_1	109.678092391404	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGTGACTGCTTCCTCCC	NA	False	NA	16	True	AATAAA	-16	NA	66893299	67265729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_66893423_66901849_66902046_66903797_66903924_66989868_66990043_67088161_67088199_67113758_67113811_67197679_67197749_67257241_67257349_67262806_67262960_67263553
transcript_57977.known	chr3	+	3062	9	FSM	ENSMUSG00000034544.18	ENSMUST00000046542.13	3062	9	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_2	112.554153632818	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAACACTGTGACTGCTT	NA	False	NA	10	True	AATAAA	-10	NA	66893035	67265723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_66893140_66901849_66902046_66989868_66990043_67088161_67088199_67113758_67113811_67197679_67197749_67257241_67257349_67262806_67262960_67263553
transcript_57981.nic	chr3	+	802	7	ISM	ENSMUSG00000034544.18	ENSMUST00000065074.14	3224	10	-20	67987	-18	-63314	5prime_fragment	FALSE	canonical	3	299	junction_4	30.8148593304522	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAGGTAAAAATGCATG	NA	False	NA	NA	False	ATTAAA	-41	NA	66892984	67197741	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_66893140_66901849_66902046_66903797_66903924_66989868_66990043_67088161_67088199_67113758_67113811_67197679
transcript_57986.known	chr3	+	3136	4	FSM	ENSMUSG00000034544.18	ENSMUST00000162620.9	3136	4	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_2	33.0689515339624	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCTGTACATTGGACTCT	NA	False	NA	NA	False	AATAAA	-13	NA	66893017	66992560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_66893140_66901849_66902046_66903797_66903924_66989868
transcript_57988.known	chr3	+	1172	9	FSM	ENSMUSG00000034544.18	ENSMUST00000162693.8	1172	9	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_8	157.4066687755	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTAGTGTTGAAATAAATG	NA	False	NA	NA	False	AATAAA	-16	NA	66893036	67263891	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_66893116_66901849_66902046_66903803_66903924_66989868_66990043_67088161_67088199_67113758_67113811_67197679_67197749_67257241_67257349_67263553
transcript_57990.known	chr3	+	1114	7	FSM	ENSMUSG00000048416.16	ENSMUST00000077916.12	1114	7	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	4.04145188432738	234	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATGTGGTTAAATTGGT	NA	False	NA	1	True	AATAAA	-14	NA	67281429	67307331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_67281596_67291883_67292032_67300224_67300309_67301267_67301397_67302584_67302745_67305113_67305244_67307034
transcript_57994.nnic	chr3	+	1500	10	NNC	ENSMUSG00000027774.17	novel	924	7	NA	NA	-6561	264	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	155.305433832103	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTATATATAATATTATATA	NA	False	NA	NA	False	AGTAAA	-31	NA	67357250	67382401	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_67357498_67358631_67358734_67361002_67361060_67363905_67364044_67365220_67365304_67375139_67375303_67376798_67376944_67380795_67380957_67381885_67381940_67382051
transcript_57996.known	chr3	-	1112	6	FSM	ENSMUSG00000047557.3	ENSMUST00000058981.3	1112	6	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_4	5.56417109729742	489	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGAGTCTAATTGCATTGTA	NA	False	NA	-3	True	AATAAA	-18	NA	67371259	67365330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_67365661_67365926_67365990_67368254_67368392_67368644_67368823_67369691_67369755_67370918
transcript_58.known	ERCC-00116	+	1977	1	FSM	ERCC-00116A	DQ668367	1977	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00116_+_0_2000
transcript_58000.known	chr3	+	4078	18	FSM	ENSMUSG00000027774.17	ENSMUST00000077271.9	4078	18	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_6	154.691388272057	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTTTCTTCCTGCTTCA	NA	False	NA	11	True	ATTAAA	-25	NA	67337428	67383862	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_67337656_67338982_67339136_67340687_67340821_67342837_67343043_67345878_67345996_67347434_67347586_67350887_67351043_67352105_67352191_67357011_67357150_67358631_67358734_67361002_67361060_67363905_67364044_67365220_67365304_67375139_67375303_67376798_67376944_67380795_67380957_67381885_67381940_67382051
transcript_58002.nic	chr3	-	726	2	ISM	ENSMUSG00000049404.8	ENSMUST00000054825.5	1325	6	35823	-76	35823	76	3prime_fragment	FALSE	canonical	2	2	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCACTGTCTCTACTGTCT	NA	False	NA	NA	False	ATTAAA	-33	NA	67387033	67386228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_-_67386820_67386898
transcript_58003.known	chr3	-	421	3	FSM	ENSMUSG00000103718.2	ENSMUST00000195865.2	421	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCACAGGCTGTTGTTAC	3392	False	NA	NA	False	NA	NA	NA	67460758	67458661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_67458833_67460133_67460255_67460629
transcript_58004.known	chr3	+	3011	16	FSM	ENSMUSG00000027775.10	ENSMUST00000029344.10	3011	16	0	0	0	0	multi-exon	TRUE	canonical	3	661	junction_4	69.2886394407882	932	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGAGGATAAATGACTGC	NA	False	NA	19	True	AATAAA	-20	NA	67490073	67511570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_67490311_67491976_67492030_67492930_67493044_67494633_67494677_67495250_67495319_67497163_67497273_67499902_67500006_67501631_67501731_67502100_67502213_67503501_67503559_67503926_67504084_67505360_67505459_67507272_67507386_67507925_67507974_67508654_67508713_67510027
transcript_58012.known	chr3	+	2369	11	FSM	ENSMUSG00000102422.2	ENSMUST00000182006.4	2369	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	227.547555469181	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCCTTTTGCTCACTAACA	NA	False	NA	24	True	AATAAA	-26	NA	67799564	68533799	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_67799655_67948526_67948592_67954570_67954652_67962595_67962732_68401906_68402591_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
transcript_58017.known	chr3	+	2059	8	FSM	ENSMUSG00000027777.16	ENSMUST00000182532.8	2059	8	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	163.233149894529	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACAAGCACTGGCTGTGTC	NA	False	NA	39	True	AATAAA	-41	NA	68375515	68533814	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_68375563_68401906_68402591_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
transcript_5802.known	chr1	+	1046	8	FSM	ENSMUSG00000026617.17	ENSMUST00000110965.2	1046	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	90.255872102482	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTAATACGCTTAAGACTT	NA	False	NA	3	True	ATTAAA	-17	NA	185064376	185088978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_185064461_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185084378_185084577_185086153_185086260_185088674
transcript_58021.known	chr3	+	2156	8	FSM	ENSMUSG00000027777.16	ENSMUST00000182719.8	2156	8	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	72.6321455791344	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACGTCCTTTTGCTCACTA	NA	False	NA	21	True	AATAAA	-23	NA	68401540	68533796	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_68401703_68401906_68402591_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
transcript_58025.known	chr3	+	1730	7	FSM	ENSMUSG00000027777.16	ENSMUST00000170788.9	1730	7	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	136.891684675634	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGTCCTTTTGCTCACTAA	NA	False	NA	22	True	AATAAA	-24	NA	68479577	68533797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_68479997_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
transcript_58030.nic	chr3	-	452	2	ISM	ENSMUSG00000027778.16	ENSMUST00000152502.8	2608	13	-104	76857	-32	7993	5prime_fragment	FALSE	canonical	3	33	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAGACCCCAGATGTAGA	NA	False	NA	NA	False	AATAAA	-15	NA	68911935	68901634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_-_68901916_68911764
transcript_58031.known	chr3	-	4063	20	FSM	ENSMUSG00000027778.16	ENSMUST00000107812.8	4063	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	8.68500793787124	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAAGTCTGTTTGTGTTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	68911876	68799831	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_68801515_68805817_68805942_68821944_68822118_68822226_68822317_68823424_68823597_68825289_68825438_68825822_68825959_68835059_68835125_68838154_68838319_68843179_68843255_68847418_68847538_68857686_68857867_68869512_68869651_68870955_68871046_68875179_68875290_68892747_68892817_68895216_68895328_68898074_68898297_68901833_68901916_68911764
transcript_58032.known	chr3	-	4064	20	FSM	ENSMUSG00000027778.16	ENSMUST00000169064.8	4064	20	0	0	0	0	multi-exon	FALSE	non_canonical	3	27	junction_10	3.97847393451879	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAATAAAAAGGTTAAAAAA	NA	False	NA	NA	False	AAGAAA	-35	NA	68911903	68799857	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_68801515_68805817_68805942_68821944_68822118_68822226_68822317_68823424_68823597_68825289_68825438_68825822_68825959_68835059_68835125_68838154_68838319_68843179_68843255_68847418_68847538_68857686_68857867_68869512_68869651_68870955_68871046_68875179_68875290_68892747_68892817_68895216_68895328_68898074_68898295_68901831_68901916_68911764
transcript_58033.known	chr3	+	4057	24	FSM	ENSMUSG00000034349.15	ENSMUST00000148385.8	4057	24	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	205.937434292797	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAAGTTTCCTGTTTTAT	NA	False	NA	20	True	TATAAA	-21	NA	68912340	68941956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_68912424_68913408_68913558_68914521_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403_68925545_68926507_68926659_68928568_68928734_68929558_68929793_68931497_68931684_68933156_68933319_68934825_68935052_68935151_68935232_68935777_68935931_68936733_68936861_68937575_68937766_68938740_68938886_68939069_68939244_68940039_68940223_68940358_68940592_68941270_68941455_68941706
transcript_58035.nic	chr3	+	1844	10	ISM	ENSMUSG00000034349.15	ENSMUST00000042901.15	4316	24	-127	13295	-127	-72	5prime_fragment	FALSE	canonical	3	521	junction_3	56.5844719789431	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAGAAAAAAAATTAAAAGA	NA	False	NA	NA	False	NA	NA	NA	68911943	68928661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_68912424_68913408_68913547_68914521_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403_68925545_68926507_68926659_68928568
transcript_58039.nic	chr3	+	1497	8	ISM	ENSMUSG00000034349.15	ENSMUST00000042901.15	4316	24	-127	16515	-127	0	5prime_fragment	FALSE	canonical	3	521	junction_3	58.1644396587496	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGGAAAAAATTCATGAA	NA	False	NA	NA	False	AATAGA	-20	NA	68911943	68925441	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_68912424_68913408_68913547_68914521_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403
transcript_5804.nnic	chr1	+	923	7	NNC	ENSMUSG00000026617.17	novel	2200	9	NA	NA	-19	2732	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_6	99.9566572737071	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAGTGTGGAAGTTGATG	NA	False	NA	NA	False	AATAAA	-17	NA	185064326	185081633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_185064461_185070302_185070430_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185081325
transcript_58040.known	chr3	+	1163	8	FSM	ENSMUSG00000034349.15	ENSMUST00000136502.8	1163	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	229.368609848151	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGGAAAAAATTCATGAA	NA	False	NA	NA	False	AATAGA	-20	NA	68912302	68925441	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_68912449_68913408_68913547_68914521_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403
transcript_58045.known	chr3	+	3983	24	FSM	ENSMUSG00000034349.15	ENSMUST00000107803.7	3983	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	208.165994546286	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAATGACAAGTTTCCTGT	NA	False	NA	15	True	TATAAA	-16	NA	68912323	68941951	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_68912424_68913408_68913547_68914596_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403_68925545_68926507_68926659_68928568_68928734_68929558_68929793_68931497_68931684_68933156_68933319_68934825_68935052_68935151_68935232_68935777_68935931_68936733_68936861_68937575_68937766_68938740_68938886_68939069_68939244_68940039_68940223_68940358_68940592_68941270_68941455_68941706
transcript_58046.known	chr3	-	1553	3	FSM	ENSMUSG00000034317.15	ENSMUST00000136512.3	1553	3	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_2	267.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTTGTTAAAGGAATTTA	NA	False	NA	NA	False	AATACA	-15	NA	68952048	68944169	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_68945342_68951100_68951176_68951742
transcript_58047.known	chr3	-	2939	3	FSM	ENSMUSG00000034317.15	ENSMUST00000107802.8	2939	3	0	0	0	0	multi-exon	FALSE	canonical	3	361	junction_2	117	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTGACATAGTTTTCTTA	NA	False	NA	-6	True	AATAAA	-26	NA	68952088	68942620	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_68945342_68951100_68951176_68951945
transcript_58048.known	chr3	-	372	2	FSM	ENSMUSG00000034317.15	ENSMUST00000153259.2	372	2	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAGGAGATTGACAGACCA	NA	False	NA	NA	False	GATAAA	-18	NA	68952056	68951121	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_68951176_68951738
transcript_5805.nnic	chr1	+	903	7	NNC	ENSMUSG00000026617.17	novel	2200	9	NA	NA	-19	2732	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_6	99.9566572737071	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAGTGTGGAAGTTGATG	NA	False	NA	NA	False	AATAAA	-17	NA	185064326	185081633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_185064461_185070302_185070430_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185081345
transcript_58053.known	chr3	-	2028	3	FSM	ENSMUSG00000043300.3	ENSMUST00000061826.3	2028	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	5	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGTTTCTCGATGTCA	NA	False	NA	1	True	ATTAAA	-41	NA	69506293	69481490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_69483294_69486658_69486725_69506134
transcript_58056.known	chr3	-	408	1	FSM	ENSMUSG00000068969.4	ENSMUST00000091052.4	408	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTTGTGTACATGTTTT	NA	False	NA	NA	False	AAGAAA	-9	NA	69624726	69624318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_69624300_69624700
transcript_58058.known	chr3	+	945	7	FSM	ENSMUSG00000027787.15	ENSMUST00000127211.7	945	7	0	0	0	0	multi-exon	FALSE	canonical	3	839	junction_3	71.0604203008491	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAGAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	69629422	69639309	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_69629456_69629741_69629800_69631589_69631725_69633693_69633791_69636670_69636752_69637737_69637867_69638897
transcript_58059.known	chr3	+	746	3	FSM	ENSMUSG00000027787.15	ENSMUST00000150210.2	746	3	0	0	0	0	multi-exon	FALSE	canonical	3	1029	junction_1	4.5	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGTGTTGTGAAGGTTT	NA	False	NA	11	True	AATAAA	-21	NA	69653764	69656375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_69654169_69655630_69655702_69656104
transcript_58060.known	chr3	+	494	6	FSM	ENSMUSG00000027787.15	ENSMUST00000143041.8	494	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	370.566377319907	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTGGAGTTTCTTCAGGG	NA	False	NA	NA	False	AAAACA	-14	NA	69629364	69642422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_69629456_69629741_69629800_69636670_69636752_69637737_69637867_69638897_69638989_69642378
transcript_58061.known	chr3	-	223	2	FSM	ENSMUSG00000103396.2	ENSMUST00000194825.2	223	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCTGGCTCTGCCCACTT	NA	False	NA	NA	False	NA	NA	NA	71373002	71372561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_71372612_71372829
transcript_58062.known	chr3	-	443	3	FSM	ENSMUSG00000027792.12	ENSMUST00000153917.2	443	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTGTGAGTATAATACT	NA	False	NA	NA	False	AATAAA	-16	NA	73615600	73611383	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_73611638_73613871_73613928_73615467
transcript_58063.nnic	chr3	-	724	5	NNC	ENSMUSG00000034151.14	novel	2467	17	NA	NA	76407	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	1.92028643696715	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTGCAAGTATTGGAGAG	NA	False	NA	0	True	AATAAA	-21	NA	74974603	74945213	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_74945397_74947190_74947327_74959679_74959938_74968839_74968963_74974579
transcript_58069.known	chr3	-	907	8	FSM	ENSMUSG00000027835.12	ENSMUST00000029424.12	907	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	493.920757091372	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTTAAAGTTTGACTGT	NA	False	NA	NA	False	ATTAAA	-15	NA	75464118	75424767	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_75424909_75428008_75428092_75428337_75428417_75434894_75435022_75436116_75436235_75440847_75440898_75448466_75448686_75464028
transcript_58070.known	chr3	+	4091	9	FSM	ENSMUSG00000027834.16	ENSMUST00000029423.9	4091	9	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	2.1650635094611	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	AGTAAA	-41	NA	75464853	75550802	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_75464950_75520386_75520655_75521760_75521992_75523874_75524070_75526425_75526631_75531165_75531264_75545224_75545312_75547555_75547646_75547981
transcript_58075.nnic	chr3	-	1039	4	NNC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	-107	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_3	92.8906166771793	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTCATGGTCATGGTG	NA	False	NA	-5	True	NA	NA	NA	75563145	75554752	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_75555246_75556106_75556298_75562696_75562869_75562962
transcript_58076.nnic	chr3	-	1006	4	NNC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	-105	0	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	82.6411250864577	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTCATGGTCATGGTG	NA	False	NA	-5	True	NA	NA	NA	75563143	75554752	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_75555246_75556106_75556298_75562696_75562869_75562993
transcript_58079.nnic	chr3	-	1905	3	NNC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	-107	5	intron_retention	FALSE	canonical	3	25	junction_2	102.5	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATGGTCATGGTGTTTCT	NA	False	NA	0	True	NA	NA	NA	75563145	75554747	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_75556298_75562696_75562869_75562962
transcript_58080.nnic	chr3	-	1872	3	NNC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	-105	5	intron_retention	FALSE	canonical	3	71	junction_2	79.5	476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATGGTCATGGTGTTTCT	NA	False	NA	0	True	NA	NA	NA	75563143	75554747	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_75556298_75562696_75562869_75562993
transcript_58082.known	chr3	-	1026	3	FSM	ENSMUSG00000099370.2	ENSMUST00000190602.2	1026	3	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	94	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTCATGGTCATGGTG	NA	False	NA	-5	True	NA	NA	NA	75563038	75554752	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_75555246_75556106_75556298_75562696
transcript_58084.known	chr3	-	817	3	FSM	ENSMUSG00000034109.16	ENSMUST00000125405.2	817	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	3	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAAAAAAAACAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	75863957	75817162	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_75817366_75818881_75818957_75863418
transcript_58085.known	chr3	-	1816	1	FSM	ENSMUSG00000034109.16	ENSMUST00000192433.2	1816	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCATCCTTGCTGTGAATG	NA	False	NA	NA	False	AATAAA	-17	NA	75864238	75862422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_75862400_75864200
transcript_58086.nnic	chr3	+	2021	2	Genic_Genomic	ENSMUSG00000070443.7	novel	999	1	NA	NA	-25440	217	multi-exon	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAGAAAATGATACCAT	NA	False	NA	NA	False	AATAAA	-29	NA	78799124	78825780	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr3_+_78799821_78824455
transcript_58088.nnic	chr3	-	2038	2	Genic_Genomic	ENSMUSG00000091361.3	novel	556	1	NA	NA	-26062	48	multi-exon	FALSE	canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAATGACCAT	NA	False	NA	NA	False	AATAAA	-45	NA	78825791	78799125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr3_-_78799805_78824432
transcript_58089.nnic	chr3	-	2022	2	Genic_Genomic	ENSMUSG00000091361.3	novel	556	1	NA	NA	-26057	46	multi-exon	FALSE	canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAATGACC	NA	False	NA	NA	False	AATAAA	-43	NA	78825786	78799127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr3_-_78799851_78824487
transcript_5809.known	chr1	+	4906	32	FSM	ENSMUSG00000026615.15	ENSMUST00000046514.13	4906	32	0	0	0	0	multi-exon	FALSE	canonical	3	1945	junction_14	331.30791485156	1728	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATTTGGTTCATCCTGCA	NA	False	NA	22	True	AATAAA	-24	NA	185095240	185160557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139951_185142381_185142434_185143354_185143565_185143899_185143973_185145351_185145432_185145645_185145748_185146526_185146683_185147950_185148149_185150408_185150583_185152323_185152485_185156507_185156587_185160048_185160114_185160193
transcript_58090.nnic	chr3	-	2048	2	Genic_Genomic	ENSMUSG00000091361.3	novel	556	1	NA	NA	-26062	45	multi-exon	FALSE	canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATGAC	NA	False	NA	NA	False	AATAAA	-42	NA	78825791	78799128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr3_-_78799873_78824487
transcript_58091.known	chr3	-	444	1	FSM	ENSMUSG00000037096.7	ENSMUST00000036976.7	444	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAGAAATTATTGGATAA	NA	False	NA	NA	False	NA	NA	NA	78874106	78873662	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_78873700_78874100
transcript_58098.known	chr3	+	1752	10	FSM	ENSMUSG00000027804.14	ENSMUST00000029382.13	1752	10	0	0	0	0	multi-exon	FALSE	canonical	3	2177	junction_5	219.851352699843	7111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGGATGTCCTTTCCTG	NA	False	NA	29	True	AATAAA	-19	NA	79498671	79510957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_79498865_79500916_79501058_79502508_79502616_79504991_79505181_79506098_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337
transcript_58099.known	chr3	+	3777	9	FSM	ENSMUSG00000027804.14	ENSMUST00000161460.8	3777	9	0	0	0	0	multi-exon	FALSE	canonical	3	2177	junction_4	229.457478359281	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGAATCTCATTTTAAAAT	NA	False	NA	16	True	AATAAA	-15	NA	79498648	79510583	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_79498865_79500916_79501058_79502508_79505181_79506098_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337
transcript_58100.known	chr3	-	2377	13	FSM	ENSMUSG00000027809.15	ENSMUST00000029386.14	2377	13	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_10	10.8790701195767	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTACCTTTCAAGTCCTTC	3584	False	NA	0	True	AATAAA	-30	NA	79536170	79511094	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_79511473_79512211_79512434_79512936_79513120_79517105_79517275_79519218_79519363_79520928_79521070_79522306_79522454_79523230_79523309_79525613_79525733_79526145_79526228_79530044_79530275_79530847_79530986_79535824
transcript_58104.known	chr3	-	3740	3	FSM	ENSMUSG00000027809.15	ENSMUST00000149511.2	3740	3	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATATAAATGTTTACACTC	3729	False	NA	NA	False	AATAAA	-11	NA	79536025	79526873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_79530275_79530847_79530986_79535824
transcript_58108.known	chr3	+	1970	2	FSM	ENSMUSG00000027811.10	ENSMUST00000029388.10	1970	2	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_1	0	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCGTTTCTTTAGACTCA	4369	False	NA	NA	False	AATAAA	-14	NA	79536385	79540127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_79536664_79538435
transcript_58110.nnic	chr3	+	1878	2	NNC	ENSMUSG00000027811.10	novel	1970	2	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	0	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCGTTTCTTTAGACTCA	4377	False	NA	NA	False	AATAAA	-14	NA	79536393	79540127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_79536580_79538435
transcript_58111.known	chr3	-	2898	12	FSM	ENSMUSG00000027956.12	ENSMUST00000029568.7	2898	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	7.83085653358474	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTTCTTCTTTAGATA	NA	False	NA	NA	False	AATAAA	-17	NA	79749986	79719870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_79721454_79724323_79724378_79728564_79728663_79729937_79730058_79732585_79732705_79734129_79734207_79734921_79735004_79739368_79739450_79741214_79741315_79743540_79743664_79746444_79746614_79749694
transcript_58112.nnic	chr3	-	2819	12	NIC	ENSMUSG00000027956.12	novel	2898	12	NA	NA	-71	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_3	3.82466981235684	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTTCTTCTTTAGATA	NA	False	NA	NA	False	AATAAA	-17	NA	79750290	79719870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_-_79721454_79724323_79724378_79728564_79728663_79729937_79730058_79732585_79732705_79734129_79734207_79734921_79735004_79739368_79739450_79741214_79741315_79743540_79743664_79746444_79746614_79750077
transcript_58113.nnic	chr3	-	1642	12	NIC	ENSMUSG00000027956.12	novel	2898	12	NA	NA	-14	-551	combination_of_known_splicesites	FALSE	canonical	3	18	junction_3	3.82466981235684	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTACTTTCTTGGTTGTG	NA	False	NA	NA	False	AATAAA	-13	NA	79750233	79720990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_-_79721454_79724323_79724378_79728564_79728663_79729937_79730058_79732585_79732705_79734129_79734207_79734921_79735004_79739368_79739450_79741214_79741315_79743540_79743664_79746444_79746614_79750077
transcript_58119.known	chr3	-	3029	10	FSM	ENSMUSG00000028020.17	ENSMUST00000029654.15	3029	10	0	0	0	0	multi-exon	TRUE	canonical	3	21	junction_1	6.91214711777591	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGCTCTTTACTGCTATG	NA	False	NA	-11	True	ATTAAA	-22	NA	80820967	80750905	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_80752565_80758214_80758508_80763091_80763245_80767467_80767609_80769009_80769093_80769198_80769429_80785315_80785384_80786932_80787040_80819274_80819426_80820823
transcript_5812.known	chr1	+	5638	20	FSM	ENSMUSG00000026615.15	ENSMUST00000192284.6	5638	20	0	0	0	0	multi-exon	FALSE	canonical	3	1945	junction_14	246.149122650716	640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAAGAAAATCTTG	NA	False	NA	NA	False	NA	NA	NA	185095240	185142396	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687
transcript_58121.known	chr3	-	1101	8	FSM	ENSMUSG00000028020.17	ENSMUST00000107743.8	1101	8	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_4	4.17475405605784	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCTGGTTTTGTATTTAA	NA	False	NA	NA	False	AATAAA	-20	NA	80820835	80762935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_80763245_80767467_80767609_80769009_80769093_80769198_80769429_80785315_80785384_80786932_80787040_80819274_80819426_80820823
transcript_58122.known	chr3	+	2818	7	FSM	ENSMUSG00000028019.10	ENSMUST00000129285.8	2818	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	32.8705372974374	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTAAGTGTTCGTCTAAGT	NA	False	NA	40	True	AATAAA	-25	NA	80944478	81121341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_80944862_81038324_81038384_81048711_81048908_81082122_81082304_81111541_81111750_81116350_81116569_81119768
transcript_58123.known	chr3	+	3521	6	FSM	ENSMUSG00000028019.10	ENSMUST00000029652.4	3521	6	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	10.870142593361	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTCGTCTAAGTGTATGT	NA	False	NA	46	True	AATAAA	-31	NA	80943722	81121347	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_80944862_81048711_81048908_81082122_81082304_81111541_81111750_81116350_81116569_81119768
transcript_58124.known	chr3	+	703	1	FSM	ENSMUSG00000028015.4	ENSMUST00000192067.2	703	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	TTTAAA	-5	NA	81839929	81840632	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_81839900_81840600
transcript_58126.known	chr3	+	1695	10	FSM	ENSMUSG00000033860.14	ENSMUST00000048486.13	1695	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	1.8324913891634	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGACATTCCGTGGCTT	NA	False	NA	NA	False	AATAAA	-16	NA	82915030	82922356	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_82915290_82915459_82915505_82915680_82915865_82915954_82916049_82917370_82917502_82917762_82917897_82918651_82918837_82920070_82920349_82921444_82921615_82922141
transcript_58127.known	chr3	+	1741	9	FSM	ENSMUSG00000033860.14	ENSMUST00000194175.2	1741	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	1.69096865730859	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATAGAACTTGACCTGTAT	NA	False	NA	NA	False	AATAAA	-12	NA	82915167	82922012	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_82915290_82915459_82915505_82915680_82915865_82915954_82916049_82917370_82917502_82917762_82917897_82918651_82918837_82920070_82920349_82921444
transcript_58130.known	chr3	+	1749	15	FSM	ENSMUSG00000027998.12	ENSMUST00000029628.11	1749	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	194.977719815598	1334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCTGTGTTTTATTTCTG	NA	False	NA	24	True	AATAAA	-16	NA	82962838	82979596	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_82962962_82964077_82964185_82965962_82966106_82966633_82966688_82967143_82967235_82968340_82968429_82973188_82973288_82973985_82974079_82975304_82975455_82975565_82975668_82976268_82976372_82976999_82977109_82977929_82978044_82978496_82978691_82979417
transcript_58131.known	chr3	+	1851	15	FSM	ENSMUSG00000027998.12	ENSMUST00000150268.8	1851	15	0	0	0	0	multi-exon	TRUE	canonical	3	670	junction_6	49.0312790627637	1422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGGCATGTTGAGGATTG	NA	False	NA	7	True	AATAAA	-40	NA	82962828	82979662	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_82962962_82964077_82964185_82965962_82966106_82966633_82966688_82967143_82967235_82968340_82968429_82973188_82973288_82973985_82974079_82975304_82975455_82975565_82975668_82976268_82976372_82976999_82977109_82977903_82978044_82978496_82978691_82979417
transcript_58132.known	chr3	+	2003	3	FSM	ENSMUSG00000027996.14	ENSMUST00000029625.8	2003	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	5.5	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCTTCTGTCATGTCT	NA	False	NA	21	True	TATAAA	-24	NA	83673627	83681623	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_83674351_83676632_83676714_83680424
transcript_58134.known	chr3	-	3014	3	FSM	ENSMUSG00000027995.11	ENSMUST00000029623.11	3014	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	5.5	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCGGTTTCTCTGTTTTTC	NA	False	NA	-1	True	TATAAA	-16	NA	83749074	83743578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_83746097_83748195_83748444_83748826
transcript_58140.known	chr3	-	875	8	FSM	ENSMUSG00000033752.8	ENSMUST00000047368.8	875	8	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_3	22.7497476998793	3911	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTTCTCCTCTTTTTGG	NA	False	NA	NA	False	AATAAA	-15	NA	84063093	83995239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_83995482_84000861_84000907_84012241_84012357_84023733_84023809_84041324_84041474_84045475_84045534_84049005_84049072_84062968
transcript_58155.known	chr3	-	3816	12	FSM	ENSMUSG00000027993.17	ENSMUST00000054990.11	3816	12	0	0	0	0	multi-exon	TRUE	canonical	2	9	junction_11	26.7448921515557	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	AAGAAA	-43	NA	84178098	84071028	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_84072557_84074958_84075100_84078766_84078838_84080071_84080241_84084938_84085107_84085381_84085486_84097819_84098544_84099387_84099569_84100527_84100680_84115480_84115719_84117479_84117662_84177940
transcript_58157.known	chr3	-	1343	9	FSM	ENSMUSG00000074513.10	ENSMUST00000143514.3	1343	9	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	63.3733974156349	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTCCCCTGGAAAAGAAGGA	NA	False	NA	NA	False	NA	NA	NA	84489932	84405042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_84405199_84417114_84417290_84422939_84423098_84426788_84427011_84434992_84435106_84436476_84436573_84441893_84442003_84455240_84455343_84489720
transcript_58158.known	chr3	-	2799	8	FSM	ENSMUSG00000074513.10	ENSMUST00000098990.10	2799	8	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_6	7.88954358370519	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGCCCTGTCCTTAT	NA	False	NA	-3	True	ATTAAA	-16	NA	84489841	84403399	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_84405199_84417114_84417290_84422939_84423098_84426788_84427011_84434992_84435106_84441893_84442003_84455240_84455343_84489720
transcript_58166.known	chr3	+	2221	11	FSM	ENSMUSG00000028086.16	ENSMUST00000029727.8	2221	11	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	26.0516794084374	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAGAAAAAAAAAAAGAGA	629	False	NA	NA	False	NA	NA	NA	84859452	84884952	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_84859947_84862181_84862265_84865810_84865953_84872554_84872690_84874746_84874871_84876471_84876609_84878102_84878217_84879681_84879864_84881709_84881936_84883480_84883692_84884579
transcript_58169.known	chr3	-	1519	2	FSM	ENSMUSG00000085527.2	ENSMUST00000148478.2	1519	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	85481252	85463352	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_85464745_85481125
transcript_58175.known	chr3	+	3469	13	FSM	ENSMUSG00000028085.13	ENSMUST00000127348.8	3469	13	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_6	19.0283049399806	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGGTGCAGTGAAAGAGG	NA	False	NA	NA	False	CATAAA	-18	NA	85481425	85562929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_85481627_85483170_85483322_85509166_85509281_85511687_85511887_85512321_85512445_85518658_85518773_85520769_85520855_85523921_85523967_85526130_85526321_85544230_85544365_85552276_85552356_85559587_85559723_85561030
transcript_58176.known	chr3	+	1820	12	FSM	ENSMUSG00000028085.13	ENSMUST00000107672.8	1820	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	47.5594451864851	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATACTGCCCTGAAAAAGC	NA	False	NA	NA	False	ATTAAA	-15	NA	85481425	85553886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_85481627_85483170_85483322_85509166_85509281_85511687_85511887_85512321_85512445_85518658_85518773_85520769_85520855_85523921_85523967_85526130_85526321_85544230_85544365_85552276_85552356_85553501
transcript_58178.known	chr3	+	1980	12	FSM	ENSMUSG00000028085.13	ENSMUST00000107674.2	1980	12	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_6	12.872547507733	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGAAACATGGCTGAAAAC	NA	False	NA	NA	False	NA	NA	NA	85481433	85560140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_85481627_85483170_85483322_85509166_85509281_85511687_85511887_85512321_85512445_85518658_85518773_85520769_85520855_85523921_85523967_85526130_85526321_85544230_85544365_85552276_85552356_85559587
transcript_58186.nnic	chr3	+	801	4	NNC	ENSMUSG00000028085.13	novel	1820	12	NA	NA	64287	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	88.7280489285472	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCAGATGCCGTGGGTGC	NA	False	NA	9	True	AATAAA	-13	NA	85545788	85561465	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_85545941_85552276_85552356_85559587_85559723_85561030
transcript_58187.nnic	chr3	+	648	3	NNC	ENSMUSG00000028085.13	novel	1820	12	NA	NA	-87	23841	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	93.5	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTAATGTTTGTGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	85481338	85507189	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_85481627_85483170_85483322_85506980
transcript_58188.known	chr3	+	366	2	FSM	ENSMUSG00000028085.13	ENSMUST00000134273.2	366	2	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAGAAAATGTTTATGTCA	NA	False	NA	NA	False	NA	NA	NA	85481438	85483348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_85481627_85483170
transcript_58205.known	chr3	-	977	6	FSM	ENSMUSG00000028081.7	ENSMUST00000029722.7	977	6	0	0	0	0	multi-exon	FALSE	canonical	3	3673	junction_2	2509.92074775281	164052	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCTGTCCATTGATTTG	NA	False	NA	NA	False	AATAAA	-21	NA	86050009	86045246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_86045418_86045789_86045900_86046346_86046556_86048545_86048734_86049004_86049109_86049814
transcript_58206.nnic	chr3	+	1929	4	NNC	ENSMUSG00000028080.17	novel	6372	39	NA	NA	-453	-65357	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_2	0.471404520791032	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATTTTTTTCCCTCGTTGT	NA	False	NA	NA	False	ATTAAA	-14	NA	86131533	86193944	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_86131791_86132375_86132812_86192303_86192536_86192940
transcript_58208.known	chr3	-	3486	16	FSM	ENSMUSG00000028078.15	ENSMUST00000195561.6	3486	16	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_11	36.9688156874593	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAATCCATGGGGTGGGT	NA	False	NA	-9	True	AATAAA	-14	NA	86827642	86693465	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_86694720_86699301_86699419_86700525_86700607_86701123_86701221_86706317_86706396_86706767_86706902_86712890_86713038_86713428_86713549_86720983_86721042_86722396_86722506_86723664_86723738_86731942_86732038_86739039_86739142_86743611_86743715_86813191_86813524_86827056
transcript_58209.known	chr3	-	4012	16	FSM	ENSMUSG00000028078.15	ENSMUST00000029719.14	4012	16	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_11	51.275031827283	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATGGGGTGGGTGAAATT	NA	False	NA	-3	True	AATAAA	-20	NA	86828159	86693459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_86694720_86699301_86699419_86700525_86700607_86701123_86701221_86706317_86706396_86706767_86706902_86712890_86713038_86713428_86713549_86720983_86721042_86722396_86722506_86723664_86723741_86731942_86732038_86739039_86739142_86743611_86743715_86813191_86813524_86827056
transcript_58211.known	chr3	-	2066	12	FSM	ENSMUSG00000028078.15	ENSMUST00000194452.2	2066	12	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_7	39.3729781062936	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACACACCTTTCTCTGT	NA	False	NA	NA	False	AATAAA	-20	NA	86827681	86706227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_86706396_86706767_86706902_86712890_86713038_86713428_86713549_86720983_86721042_86722396_86722506_86723664_86723738_86731942_86732038_86739039_86739142_86743611_86743715_86813191_86813524_86827056
transcript_58213.known	chr3	+	829	1	FSM	ENSMUSG00000104074.2	ENSMUST00000195159.2	829	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATATAAGGATTTTATACAA	NA	False	NA	NA	False	NA	NA	NA	86771798	86772627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_86771800_86772600
transcript_58215.known	chr3	+	1243	7	FSM	ENSMUSG00000041750.14	ENSMUST00000041920.5	1243	7	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_4	26.2408714286194	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATGTATGTGCGGAGTG	NA	False	NA	NA	False	ATTAAA	-17	NA	86893892	86896840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_86894013_86894294_86894568_86894849_86895129_86895584_86895662_86895663_86895863_86896457_86896555_86896642
transcript_58217.known	chr3	+	1131	6	FSM	ENSMUSG00000041750.14	ENSMUST00000192481.2	1131	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	25.3929123969662	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATGTATGTGCGGAGTG	NA	False	NA	NA	False	ATTAAA	-17	NA	86893892	86896840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_86894013_86894294_86894454_86894849_86895129_86895584_86895863_86896457_86896555_86896642
transcript_58220.known	chr3	+	1527	6	FSM	ENSMUSG00000041750.14	ENSMUST00000194208.6	1527	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	24.5568727650733	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTTTATTGTTTTATTA	NA	False	NA	2	True	AATAAA	-14	NA	86893857	86897087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_86894013_86894294_86894568_86894849_86895129_86895584_86895863_86896457_86896555_86896642
transcript_5823.known	chr1	+	3034	7	FSM	ENSMUSG00000026615.15	ENSMUST00000193788.6	3034	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	936.212122805985	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACTAATAATAGGTGATCAA	NA	False	NA	NA	False	AATAAA	-13	NA	185095328	185109161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185106816
transcript_58230.known	chr3	-	1946	6	FSM	ENSMUSG00000028076.13	ENSMUST00000029717.4	1946	6	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_4	13.2	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATCCAGAGGTTTTACTT	NA	False	NA	NA	False	AATAAA	-20	NA	86906748	86903140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_86903909_86903996_86904094_86904644_86904924_86905378_86905658_86905939_86906213_86906498
transcript_58233.nic	chr3	-	1867	5	ISM	ENSMUSG00000028076.13	ENSMUST00000029717.4	1946	6	365	0	-122	0	3prime_fragment	FALSE	canonical	3	57	junction_4	12.9687123493429	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATCCAGAGGTTTTACTT	NA	False	NA	NA	False	AATAAA	-20	NA	86906383	86903140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_-_86903909_86903996_86904094_86904644_86904924_86905378_86905658_86905939
transcript_58237.nnic	chr3	-	1033	5	NNC	ENSMUSG00000041734.16	novel	7236	16	NA	NA	-8	-8517	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	21.4941852602047	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAACTCTTATCCTAGGG	NA	False	NA	NA	False	AATAAA	-20	NA	87082015	87000451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_87000711_87002943_87003094_87005048_87005214_87048283_87048430_87081702
transcript_58239.nic	chr3	-	1273	4	ISM	ENSMUSG00000041734.16	ENSMUST00000041732.9	2160	14	-255	10607	-58	-10607	5prime_fragment	FALSE	canonical	3	30	junction_3	12.684198393627	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATCGTAAAACAAACAAACC	NA	False	NA	NA	False	NA	NA	NA	87082112	87002541	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_-_87003094_87005048_87005214_87048283_87048430_87081702
transcript_5824.nic	chr1	+	949	7	ISM	ENSMUSG00000026615.15	ENSMUST00000192284.6	5638	20	-63	31316	-63	0	5prime_fragment	FALSE	canonical	3	2037	junction_4	266.097517630077	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAAGATTTTGAGAAGGT	NA	False	NA	NA	False	NA	NA	NA	185095177	185111080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971
transcript_58241.nnic	chr3	+	595	3	NNC	ENSMUSG00000048031.16	novel	2449	13	NA	NA	31608	11402	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGACTTAGCTCCACTTT	NA	False	NA	NA	False	NA	NA	NA	87374799	87386232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_87375065_87385487_87385650_87386064
transcript_58243.nnic	chr3	-	490	3	Antisense	novelGene_ENSMUSG00000048031.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0.5	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTACTTTTCTTTGCTTTC	NA	False	NA	NA	False	GATAAA	-19	NA	87419983	87394327	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr3_-_87394637_87419414_87419491_87419878
transcript_58247.known	chr3	+	2151	4	FSM	ENSMUSG00000003382.19	ENSMUST00000117293.2	2151	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	8.80656320908194	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGTACAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	87432920	87438338	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_87432967_87434564_87434624_87435176_87435415_87436530
transcript_58248.known	chr3	-	2588	17	FSM	ENSMUSG00000028072.7	ENSMUST00000029712.5	2588	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	2.97909382195325	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTCTCTTGGCCATTC	NA	False	NA	NA	False	NA	NA	NA	87702469	87685550	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_87685907_87686942_87687102_87687377_87687619_87688737_87688911_87689047_87689179_87689457_87689605_87690031_87690135_87690380_87690437_87690593_87690612_87690976_87691307_87693274_87693408_87695623_87695767_87695928_87696081_87696923_87696993_87698680_87698753_87698976_87699052_87702239
transcript_58250.known	chr3	-	2099	7	FSM	ENSMUSG00000004895.10	ENSMUST00000005015.10	2099	7	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_5	35.6401770789964	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGTGTCTGGATCTCAGA	2299	False	NA	1	True	AATAAA	-27	NA	87792915	87766209	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_87766654_87767452_87767519_87769437_87769582_87774621_87774718_87776889_87777457_87779516_87779565_87792181
transcript_58257.known	chr3	+	2245	6	FSM	ENSMUSG00000004897.17	ENSMUST00000005017.15	2245	6	0	0	0	0	multi-exon	FALSE	canonical	3	2720	junction_5	175.133549041867	658	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGACTAATTCTTTTCAA	NA	False	NA	25	True	AATAAA	-21	NA	87813627	87823439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_87814022_87820397_87820475_87820619_87820759_87821358_87821545_87821779_87821998_87822208
transcript_58270.known	chr3	-	2492	8	FSM	ENSMUSG00000004896.17	ENSMUST00000005016.16	2492	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	29.6922995583236	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTTGGAGCCTGTGTCAC	9443	False	NA	NA	False	AATAAA	-13	NA	87837451	87830211	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_87831220_87831650_87831836_87832253_87832739_87834037_87834182_87834361_87834425_87834869_87835063_87835230_87835356_87837162
transcript_58287.nic	chr3	+	1033	7	NIC	ENSMUSG00000019710.14	novel	1339	6	NA	NA	-19	-228	combination_of_known_junctions	FALSE	canonical	3	77	junction_1	348.953992510315	916	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTTGTCCACACTACCCC	NA	False	NA	37	True	AATAAA	-15	NA	87826793	87830741	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_+_87827013_87827109_87827136_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
transcript_5829.known	chr1	+	5684	4	FSM	ENSMUSG00000026614.8	ENSMUST00000238677.2	5684	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	3.68178700572909	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTCCTGGACTCTGTTA	NA	False	NA	NA	False	ATTAAA	-19	NA	185187234	185200959	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_185187877_185188510_185188627_185194883_185195124_185196273
transcript_58290.known	chr3	-	3197	7	FSM	ENSMUSG00000004896.17	ENSMUST00000159091.9	3197	7	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_5	23.5849528301415	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACAGACCTCTGAGTTCC	9460	False	NA	-2	True	NA	NA	NA	87837434	87829907	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_87831220_87831650_87832739_87834037_87834182_87834361_87834425_87834869_87835063_87835230_87835356_87837162
transcript_58292.known	chr3	+	1226	6	FSM	ENSMUSG00000019710.14	ENSMUST00000019854.13	1226	6	0	0	0	0	multi-exon	FALSE	canonical	3	263	junction_1	297.101329515706	2767	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCTTAAAAGCTTTATAAAT	NA	False	NA	26	True	AATAAA	-28	NA	87826812	87830979	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_87827013_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
transcript_58296.known	chr3	+	1115	6	FSM	ENSMUSG00000019710.14	ENSMUST00000121920.8	1115	6	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	351.330841230883	1234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCTTAAAAGCTTTATAAAT	NA	False	NA	26	True	AATAAA	-28	NA	87826869	87830979	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_87826959_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
transcript_5830.known	chr1	+	1065	2	FSM	ENSMUSG00000102185.2	ENSMUST00000194748.2	1065	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAACCGCCCAGTTCCTT	8771	False	NA	NA	False	ATTAAA	-15	NA	185219490	185230356	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_185219608_185229408
transcript_58313.known	chr3	+	2893	4	FSM	ENSMUSG00000048039.9	ENSMUST00000055984.7	2893	4	0	0	0	0	multi-exon	FALSE	canonical	3	350	junction_2	9.0921211313239	299	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTATGTGTATGTGTGTGC	NA	False	NA	31	True	NA	NA	NA	87837620	87847993	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_87837919_87838637_87839583_87845880_87846082_87846544
transcript_58315.known	chr3	+	1339	6	FSM	ENSMUSG00000019710.14	ENSMUST00000119968.8	1339	6	0	0	0	0	multi-exon	FALSE	canonical	3	595	junction_1	165.189103756876	2371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAACAGAAGTCTTAAAAG	NA	False	NA	16	True	AATAAA	-18	NA	87826812	87830969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_87827136_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
transcript_58316.known	chr3	+	931	4	FSM	ENSMUSG00000004885.6	ENSMUST00000005019.6	931	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	3.29983164553722	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCTGTGGCTCCCTGAG	8831	False	NA	8	True	ATTAAA	-19	NA	87855972	87860683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_87856218_87859421_87859601_87859784_87859902_87860293
transcript_58318.known	chr3	+	959	9	FSM	ENSMUSG00000028069.17	ENSMUST00000194258.6	959	9	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	81.6783898898601	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGGAAGAAGAAGAAGAGGC	1735	False	NA	NA	False	NA	NA	NA	87950430	87962507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_87950487_87950773_87950909_87958468_87958597_87958979_87959054_87959151_87959245_87959338_87959426_87961675_87961768_87962009_87962061_87962264
transcript_5832.known	chr1	-	1578	5	FSM	ENSMUSG00000039246.9	ENSMUST00000045388.8	1578	5	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_3	16.3477827242718	381	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAAGTGTATAATAATA	NA	False	NA	NA	False	AATAAA	-26	NA	185849507	185819927	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_185820966_185821640_185821757_185832389_185832560_185846460_185846561_185849353
transcript_58324.known	chr3	+	1630	8	FSM	ENSMUSG00000028069.17	ENSMUST00000029707.13	1630	8	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_1	22.2417148068898	992	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGTCTTTGTTTTGTTTT	1719	False	NA	36	True	TTTAAA	-25	NA	87950414	87963297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_87950487_87958468_87958597_87958979_87959054_87959151_87959245_87959338_87959426_87961675_87961768_87962009_87962061_87962264
transcript_58325.known	chr3	+	745	6	FSM	ENSMUSG00000028069.17	ENSMUST00000194380.2	745	6	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_1	24.5063257139866	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAAAGAAAAAAGTTTGT	1720	False	NA	NA	False	GATAAA	-13	NA	87950415	87961967	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_87950487_87958468_87958597_87958979_87959054_87959151_87959245_87959338_87959426_87961675
transcript_58326.known	chr3	+	2210	8	FSM	ENSMUSG00000028069.17	ENSMUST00000193398.2	2210	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	71.3130494398337	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAGACTTACATGAAATGT	1739	False	NA	22	True	TTTAAA	-11	NA	87950434	87963283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_87951101_87958468_87958597_87958979_87959054_87959151_87959245_87959338_87959426_87961675_87961768_87962009_87962061_87962264
transcript_58329.known	chr3	-	908	6	FSM	ENSMUSG00000028070.8	ENSMUST00000029708.8	908	6	0	0	0	0	multi-exon	TRUE	canonical	3	839	junction_3	34.2963554915096	7504	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGTCTTCTGGCCTTAA	NA	False	NA	-4	True	AATAAA	-25	NA	87965802	87963826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_87964084_87964292_87964441_87965030_87965145_87965227_87965339_87965436_87965546_87965633
transcript_58330.known	chr3	+	5756	38	FSM	ENSMUSG00000028068.15	ENSMUST00000071812.11	5756	38	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_11	23.9826757536325	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTGCGTTGTTGCTATAG	NA	False	NA	19	True	AATAAA	-20	NA	87989277	88028355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_87989400_87991237_87991326_87993456_87993614_87994584_87994663_87996200_87996278_87996967_87997036_87997123_87997238_87997444_87997624_87998042_87998122_87998777_87998942_87999718_87999807_88001890_88002055_88004208_88004367_88005624_88005747_88006163_88006328_88007932_88008024_88008734_88008903_88008984_88009125_88009203_88009375_88011366_88011451_88011607_88011680_88011772_88011843_88014818_88015028_88015667_88015821_88016113_88016278_88016578_88016804_88017301_88017443_88019610_88019696_88019904_88020138_88020406_88020540_88020653_88020757_88021230_88021358_88022210_88022299_88023210_88023424_88024086_88024254_88024505_88024608_88024982_88025092_88027469
transcript_58331.nic	chr3	+	632	4	ISM	ENSMUSG00000028068.15	ENSMUST00000195465.2	3511	23	-54	20845	3	0	5prime_fragment	FALSE	canonical	3	238	junction_2	4.64279609239471	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87989280	87994852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_87989400_87991237_87991326_87993456_87993614_87994584
transcript_58333.nic	chr3	+	546	2	ISM	ENSMUSG00000028068.15	ENSMUST00000193940.2	1564	3	-46	3195	3	-3188	5prime_fragment	FALSE	canonical	3	249	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GCGAAAAAGAAAACAAAACA	NA	False	NA	NA	False	NA	NA	NA	87989280	87991664	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_87989400_87991237
transcript_58336.known	chr3	-	776	4	FSM	ENSMUSG00000096935.6	ENSMUST00000197172.5	776	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	1.88561808316413	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGCATTTCTTTCTTCCTT	NA	False	NA	NA	False	AATAAA	-16	NA	88084999	88078862	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88079277_88079394_88079566_88083157_88083243_88084893
transcript_58337.known	chr3	-	987	3	FSM	ENSMUSG00000096935.6	ENSMUST00000181837.3	987	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	2	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGCATTTCTTTCTTCCTT	NA	False	NA	NA	False	AATAAA	-16	NA	88085092	88078862	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88079566_88083157_88083243_88084893
transcript_5834.known	chr1	-	1321	5	FSM	ENSMUSG00000001305.6	ENSMUST00000001339.6	1321	5	0	0	0	0	multi-exon	FALSE	canonical	3	944	junction_3	58.7962583843564	4119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGTTATCTTTTCTATT	NA	False	NA	-30	True	CATAAA	-6	NA	186481555	186453174	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_186453744_186468312_186468512_186469784_186469883_186471800_186472061_186481360
transcript_58342.nnic	chr3	-	795	3	Antisense	novelGene_ENSMUSG00000097156.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	0.5	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTTCCCTGTGGTACTTG	5111	False	NA	NA	False	AATACA	-14	NA	88138514	88132587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr3_-_88132827_88133591_88133752_88138118
transcript_58348.nnic	chr3	-	658	5	NNC	ENSMUSG00000010538.15	novel	584	4	NA	NA	-2	3	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	82.9016736863617	63	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATGGGTCTGAGTCTGCT	NA	False	NA	NA	False	CATAAA	-17	NA	88204308	88190060	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_88190292_88193307_88193377_88194404_88194525_88202697_88202758_88204130
transcript_5835.known	chr1	-	3092	4	FSM	ENSMUSG00000001305.6	ENSMUST00000162336.2	3092	4	0	0	0	0	multi-exon	FALSE	canonical	3	1054	junction_3	20.6774165590278	1465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAAATCTCTGCTTCCCTG	NA	False	NA	-16	True	ATTAAA	-12	NA	186481522	186453288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_186453744_186468312_186468512_186469784_186472061_186481360
transcript_58350.nnic	chr3	-	553	5	Fusion	ENSMUSG00000103766.6_ENSMUSG00000010538.15	novel	600	2	NA	NA	-51	-2956	multi-exon	FALSE	canonical	3	9	junction_1	82.118816357763	43	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTTTGTTTTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	88204254	88193022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr3_-_88193203_88193307_88193377_88194404_88194525_88202697_88202758_88204130
transcript_58354.known	chr3	-	481	4	FSM	ENSMUSG00000010538.15	ENSMUST00000010682.4	481	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	85.0215658916411	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGACATGGGTCTGAG	NA	False	NA	NA	False	CATAAA	-11	NA	88204145	88190066	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88190292_88194404_88194525_88202697_88202758_88204069
transcript_58355.known	chr3	-	584	4	FSM	ENSMUSG00000010538.15	ENSMUST00000107556.10	584	4	0	0	0	0	multi-exon	TRUE	canonical	3	152	junction_3	20.138409955991	941	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGACATGGGTCTGAGTCT	NA	False	NA	NA	False	CATAAA	-14	NA	88204306	88190063	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88190292_88194404_88194525_88202697_88202758_88204130
transcript_5836.known	chr1	+	3212	1	FSM	ENSMUSG00000039224.2	ENSMUST00000045108.2	3212	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAAGAAATGGTCTATAT	NA	False	NA	NA	False	NA	NA	NA	186699612	186702824	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_186699600_186702800
transcript_58363.nnic	chr3	-	469	3	NIC	ENSMUSG00000010538.15	novel	584	4	NA	NA	-2	3	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	73.5	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATGGGTCTGAGTCTGCT	NA	False	NA	NA	False	CATAAA	-17	NA	88204308	88190060	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_-_88190292_88202697_88202758_88204130
transcript_58365.known	chr3	+	1831	1	FSM	ENSMUSG00000001416.14	ENSMUST00000193666.2	1831	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAAAAAAAAAGC	3805	False	NA	NA	False	NA	NA	NA	88204423	88206254	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_88204400_88206300
transcript_58366.known	chr3	+	1977	14	FSM	ENSMUSG00000001416.14	ENSMUST00000001452.14	1977	14	0	0	0	0	multi-exon	FALSE	canonical	3	2266	junction_3	121.304155843285	9618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTGTCATGTGTTTTT	3804	False	NA	23	True	ATTAAA	-15	NA	88204422	88229074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
transcript_58367.known	chr3	+	472	2	FSM	ENSMUSG00000001416.14	ENSMUST00000164122.2	472	2	0	0	0	0	multi-exon	FALSE	canonical	3	2565	junction_1	0	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACCGTTGTCATGTGTT	865	False	NA	20	True	ATTAAA	-12	NA	88228301	88229071	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_88228453_88228750
transcript_58368.known	chr3	+	1804	12	FSM	ENSMUSG00000001416.14	ENSMUST00000164166.8	1804	12	0	0	0	0	multi-exon	FALSE	canonical	1	19	junction_2	744.224284153619	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCGTTGTCATGTGTTTT	3862	False	NA	22	True	ATTAAA	-14	NA	88204480	88229073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_88204574_88206648_88206711_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
transcript_5837.known	chr1	+	4547	10	FSM	ENSMUSG00000039210.17	ENSMUST00000065573.14	4547	10	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_8	10.9341463112378	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	186947707	187083624	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_186947874_186957699_186958417_186962980_186963043_186965327_186965511_186965943_186966024_187036526_187036595_187048720_187048761_187054480_187054552_187073683_187073773_187080553
transcript_58371.known	chr3	+	960	5	FSM	ENSMUSG00000001418.14	ENSMUST00000176425.2	960	5	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	416.550717200199	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCACTCTCCAGAGGGAA	4054	False	NA	NA	False	CATAAA	-5	NA	88232388	88235675	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_88232509_88233421_88233620_88233717_88233937_88235163_88235421_88235509
transcript_58373.known	chr3	-	2406	4	FSM	ENSMUSG00000001420.14	ENSMUST00000001456.11	2406	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	5.18544972870135	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAATAAGAGAGACTGG	NA	False	NA	NA	False	NA	NA	NA	88241811	88235961	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88237240_88239746_88239961_88240198_88240990_88241688
transcript_58376.known	chr3	-	2053	4	FSM	ENSMUSG00000001420.14	ENSMUST00000107553.8	2053	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	8.48528137423857	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTGTGGCTCGTTCATT	NA	False	NA	NA	False	AATAAA	-11	NA	88241575	88236352	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88237240_88239746_88239961_88240198_88240990_88241414
transcript_58377.known	chr3	+	4448	22	FSM	ENSMUSG00000001415.11	ENSMUST00000001451.11	4448	22	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_5	44.0686436309756	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCCTGCTGTGTCTTCT	NA	False	NA	13	True	AATAAA	-20	NA	88243566	88269645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_88243805_88249164_88249264_88249747_88249872_88250186_88250344_88252669_88252760_88253751_88253842_88254824_88254904_88256448_88256575_88256682_88256752_88257322_88257532_88258003_88258142_88258285_88258889_88260269_88260446_88261182_88261259_88261838_88262015_88262884_88263044_88265959_88266020_88266333_88266494_88266854_88266946_88267637_88267713_88268060_88268200_88268331
transcript_58380.nic	chr3	+	1212	5	ISM	ENSMUSG00000001415.11	ENSMUST00000192057.6	3119	12	-67	6789	-16	-1656	5prime_fragment	FALSE	canonical	3	289	junction_3	7.49583217528247	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGCAGCTCAGAGATGCAT	NA	False	NA	NA	False	NA	NA	NA	88243550	88253247	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_88243805_88249164_88249264_88249747_88249872_88250186_88250344_88252669
transcript_58381.known	chr3	-	2051	6	FSM	ENSMUSG00000074489.10	ENSMUST00000107542.2	2051	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	10.571660229122	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCTGGGCTGGAGTCTG	7128	False	NA	NA	False	AATAAA	-13	NA	88280050	88275928	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88276196_88276401_88276460_88276602_88276636_88276779_88276916_88277434_88278787_88279845
transcript_58382.nnic	chr3	-	748	5	NIC	ENSMUSG00000074489.10	novel	2051	6	NA	NA	-49	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_3	35.14612354158	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCTGGGCTGGAGTCTG	7079	False	NA	NA	False	AATAAA	-13	NA	88280099	88275928	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_-_88276196_88276401_88276460_88276602_88276636_88276779_88276916_88279845
transcript_58383.known	chr3	-	1047	7	FSM	ENSMUSG00000074489.10	ENSMUST00000107543.8	1047	7	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_5	15.3993145590604	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCTGGAGTCTGTCCATT	7128	False	NA	NA	False	AATAAA	-19	NA	88280050	88275922	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88276196_88276401_88276460_88276602_88276636_88276779_88276916_88277434_88277671_88278680_88278787_88279845
transcript_58384.known	chr3	-	440	4	FSM	ENSMUSG00000074483.3	ENSMUST00000076048.5	440	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_3	18.0616229121921	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCTGGGCTCGAGTCTG	5243	False	NA	NA	False	AATAAA	-13	NA	88291740	88290807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88291075_88291280_88291339_88291481_88291515_88291658
transcript_58392.known	chr3	-	795	3	FSM	ENSMUSG00000028066.16	ENSMUST00000193338.6	795	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	8.5	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATCTGTGAGGAGGTTT	NA	False	NA	-6	True	AATAAA	-16	NA	88317633	88301449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88301878_88303211_88303408_88317462
transcript_58393.known	chr3	-	1007	5	FSM	ENSMUSG00000028066.16	ENSMUST00000056370.13	1007	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	377.05205210952	3326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATCTGTGAGGAGGTTT	NA	False	NA	-6	True	AATAAA	-16	NA	88317638	88301449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88301878_88303211_88303408_88306441_88306543_88307017_88307124_88317462
transcript_58395.known	chr3	-	3577	4	FSM	ENSMUSG00000050144.14	ENSMUST00000057935.9	3577	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_3	3.85861230093008	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAACTCTGGCTTTTGGGTT	4066	False	NA	-4	True	ATTAAA	-18	NA	88332446	88317805	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88320205_88323294_88323423_88327807_88328446_88332034
transcript_58396.known	chr3	-	3429	4	FSM	ENSMUSG00000050144.14	ENSMUST00000193433.6	3429	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	28.7672653471886	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTCTGGCTTTTGGGTTT	4097	False	NA	-3	True	ATTAAA	-19	NA	88332415	88317804	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88320205_88323294_88323423_88327807_88328446_88332152
transcript_58399.known	chr3	-	3504	4	FSM	ENSMUSG00000050144.14	ENSMUST00000195657.6	3504	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	25.4689353265241	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAACTCTGGCTTTTGGGTT	4093	False	NA	-4	True	ATTAAA	-18	NA	88332419	88317805	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88320205_88323294_88323423_88327807_88328446_88332080
transcript_5840.known	chr1	+	1639	6	FSM	ENSMUSG00000039210.17	ENSMUST00000044812.12	1639	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_5	31.740195336513	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTTATGGTTTATTTTAA	NA	False	NA	NA	False	AAGAAA	-11	NA	186947740	186966614	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_186947874_186957699_186958417_186962980_186963043_186965327_186965511_186965943_186966024_186966150
transcript_58401.known	chr3	-	2357	7	FSM	ENSMUSG00000028064.18	ENSMUST00000149145.2	2357	7	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_6	14.3614066163451	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTTATGGCGTGCTGTG	NA	False	NA	NA	False	ATTAAA	-20	NA	88357345	88343268	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88344560_88345109_88345208_88345489_88345648_88345749_88345869_88348004_88348186_88355297_88355449_88356986
transcript_58403.known	chr3	-	2108	5	FSM	ENSMUSG00000028064.18	ENSMUST00000156108.8	2108	5	0	0	0	0	multi-exon	TRUE	canonical	3	30	junction_4	4.71036092035419	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTTATGGCGTGCTGTG	NA	False	NA	NA	False	ATTAAA	-20	NA	88348446	88343268	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88344560_88345109_88345208_88345489_88345648_88345749_88345869_88348004
transcript_58407.known	chr3	-	1536	10	FSM	ENSMUSG00000028063.16	ENSMUST00000036252.7	1536	10	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_9	48.196357630934	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGCTGCCCTGGCCTTTC	9763	False	NA	-2	True	ATTAAA	-18	NA	88400619	88390512	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88390721_88391133_88391254_88391353_88391462_88391921_88392145_88392233_88392455_88393510_88393637_88393766_88393938_88394114_88394241_88395581_88395739_88400543
transcript_58408.known	chr3	-	2021	10	FSM	ENSMUSG00000028063.16	ENSMUST00000120377.8	2021	10	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_5	22.6377811589932	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGCCCTGGCCTTTCT	NA	False	NA	-1	True	ATTAAA	-19	NA	88410614	88390511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88390721_88391133_88391254_88391353_88391462_88391921_88392145_88392233_88392455_88393510_88393637_88393766_88393938_88394114_88394241_88395581_88395739_88410054
transcript_58409.known	chr3	-	785	3	FSM	ENSMUSG00000028063.16	ENSMUST00000149068.2	785	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCGGTGAGTGAGGCCCGG	7853	False	NA	NA	False	NA	NA	NA	88417263	88410059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88410694_88411475_88411551_88417187
transcript_58411.known	chr3	-	897	6	FSM	ENSMUSG00000008601.13	ENSMUST00000131775.2	897	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	6.34350061086148	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAATGCCCAAGCTGGACA	5752	False	NA	NA	False	NA	NA	NA	88455556	88449615	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88449678_88450007_88450089_88450626_88450821_88452367_88452564_88454928_88455076_88455339
transcript_58413.known	chr3	-	1081	5	FSM	ENSMUSG00000008601.13	ENSMUST00000008745.13	1081	5	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_4	5.2618912949623	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTGCTGCCTTCCATCTG	5701	False	NA	0	True	AATAAA	-24	NA	88455607	88449335	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88449678_88450007_88450089_88450626_88450821_88452367_88452564_88455339
transcript_58417.known	chr3	-	438	3	FSM	ENSMUSG00000028062.16	ENSMUST00000156421.2	438	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	1321	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGTGTCTCACCTGCTT	1108	False	NA	-8	True	AATAAA	-12	NA	88460200	88457127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88457312_88458002_88458093_88460036
transcript_58419.known	chr3	-	668	4	FSM	ENSMUSG00000028062.16	ENSMUST00000029698.15	668	4	0	0	0	0	multi-exon	FALSE	canonical	3	2467	junction_3	160.918889161244	12167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTCTCACCTGCTTTC	977	False	NA	-6	True	AATAAA	-14	NA	88460331	88457125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88457312_88458002_88458093_88459661_88459825_88460102
transcript_58420.known	chr3	-	568	4	FSM	ENSMUSG00000028062.16	ENSMUST00000119002.2	568	4	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_3	1254.14043161929	558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTGTCTCACCTGCTTT	1142	False	NA	-7	True	AATAAA	-13	NA	88460166	88457126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88457312_88458002_88458093_88459661_88459825_88460036
transcript_58421.known	chr3	-	567	2	FSM	ENSMUSG00000028062.16	ENSMUST00000145172.2	567	2	0	0	0	0	multi-exon	FALSE	canonical	3	2467	junction_1	0	490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGAGTACGGTGCTGGCC	927	False	NA	NA	False	AATAAA	-22	NA	88460381	88459536	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88459825_88460102
transcript_58422.known	chr3	+	3330	11	FSM	ENSMUSG00000008604.12	ENSMUST00000008748.8	3330	11	0	0	0	0	multi-exon	FALSE	canonical	3	1295	junction_8	115.436605979213	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGGTGGTTTGTTTGTTG	6105	False	NA	NA	False	AATAAA	-26	NA	88461064	88477032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_88461220_88462644_88462797_88463096_88463300_88463963_88464227_88466924_88467084_88470414_88470641_88471676_88471817_88472313_88472398_88472519_88472636_88472997_88473185_88475387
transcript_58423.known	chr3	+	1379	6	FSM	ENSMUSG00000008604.12	ENSMUST00000194303.6	1379	6	0	0	0	0	multi-exon	FALSE	canonical	3	1330	junction_4	125.024797540328	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCTCCATGAACATGTCT	6111	False	NA	NA	False	AATAAA	-15	NA	88461070	88470867	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_88461220_88462644_88462797_88463096_88463300_88463963_88464227_88466924_88467084_88470414
transcript_5843.known	chr1	+	2411	6	FSM	ENSMUSG00000039210.17	ENSMUST00000097443.10	2411	6	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_5	28.9924128005932	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATATTTTTCAATTCTCTG	NA	False	NA	NA	False	AATAAA	-43	NA	186947704	186968028	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_186947874_186957699_186958417_186962980_186963043_186965327_186965511_186965943_186966024_186966828
transcript_5845.nnic	chr1	-	450	2	Genic_Genomic	ENSMUSG00000102824.2	novel	381	1	NA	NA	-23	135	multi-exon	FALSE	canonical	0	0	junction_1	0	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTGGGTTTTGTTATTAG	NA	False	NA	NA	False	AATAAA	-34	NA	189010043	189009504	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr1_-_189009763_189009851
transcript_5846.known	chr1	-	381	1	FSM	ENSMUSG00000102824.2	ENSMUST00000191699.2	381	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGACGCGCTTAGACAGAC	NA	False	NA	NA	False	AAGAAA	-38	NA	189010020	189009639	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_189009600_189010000
transcript_58469.known	chr3	+	1189	5	FSM	ENSMUSG00000041355.14	ENSMUST00000035785.9	1189	5	0	0	0	0	multi-exon	FALSE	canonical	3	4285	junction_2	286.022180083993	8622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTTTGTCTTGCGTCAA	3620	False	NA	15	True	AATAAA	-17	NA	88486977	88495726	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
transcript_58470.known	chr3	+	1059	6	FSM	ENSMUSG00000041355.14	ENSMUST00000195014.6	1059	6	0	0	0	0	multi-exon	FALSE	canonical	3	3697	junction_1	473.044775893361	38329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTTTGTCTTGCGTCAA	3557	False	NA	15	True	AATAAA	-17	NA	88486914	88495726	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_88486994_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
transcript_58471.known	chr3	+	560	5	FSM	ENSMUSG00000041355.14	ENSMUST00000192688.6	560	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	2262.17920377675	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACCTGTTGTGGTAAGTTC	NA	False	NA	NA	False	NA	NA	NA	88483182	88491180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_88483288_88483806_88483911_88487186_88487342_88488280_88488380_88491083
transcript_58472.known	chr3	+	494	3	FSM	ENSMUSG00000041355.14	ENSMUST00000194604.2	494	3	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_2	19	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCTGTGGAAGGGAGGGAC	NA	False	NA	NA	False	NA	NA	NA	88483255	88487283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_88483288_88483545_88483911_88487186
transcript_58473.known	chr3	+	620	6	FSM	ENSMUSG00000041355.14	ENSMUST00000192495.6	620	6	0	0	0	0	multi-exon	FALSE	canonical	1	12	junction_3	1870.91094389872	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTAGACTCCAGAGGGTGT	3616	False	NA	NA	False	AAGAAA	-10	NA	88486973	88495340	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_88486994_88487186_88487342_88488280_88488346_88491043_88491193_88494171_88494250_88495187
transcript_58476.known	chr3	+	4492	23	FSM	ENSMUSG00000028059.17	ENSMUST00000176500.8	4492	23	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	58.4462916553691	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTGGAAATGAAGCGCCGT	9394	False	NA	15	True	ATTAAA	-17	NA	88523449	88555359	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_88523764_88523867_88523962_88537093_88537239_88539217_88539286_88539582_88539647_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
transcript_58478.known	chr3	+	4300	22	FSM	ENSMUSG00000028059.17	ENSMUST00000029694.14	4300	22	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_1	44.2621032808889	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTGGAAATGAAGCGCCGT	NA	False	NA	15	True	ATTAAA	-17	NA	88528412	88555359	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_88528629_88537093_88537239_88539217_88539286_88539582_88539647_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
transcript_58479.known	chr3	+	4390	22	FSM	ENSMUSG00000028059.17	ENSMUST00000107510.10	4390	22	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	68.5955314781911	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGCTGGAAATGAAGCGCC	NA	False	NA	13	True	ATTAAA	-15	NA	88528598	88555357	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_88528907_88537093_88537239_88539217_88539286_88539582_88539647_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
transcript_58492.known	chr3	+	2981	14	FSM	ENSMUSG00000028060.15	ENSMUST00000029696.11	2981	14	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_11	33.2047619027415	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTAATGTGCATTGTT	8	True	NA	16	True	AATAAA	-16	NA	88593109	88620231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607567_88607822_88616086_88616249_88617136_88617250_88618067_88618160_88618936
transcript_58494.known	chr3	+	2567	14	FSM	ENSMUSG00000028060.15	ENSMUST00000198042.5	2567	14	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_11	80.4603618093109	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGCAGCGAGAAGAGGGAT	3	True	NA	NA	False	AAGAAA	-34	NA	88593133	88619869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607567_88607822_88616086_88616249_88617164_88617250_88618067_88618160_88618936
transcript_58500.nic	chr3	+	955	6	ISM	ENSMUSG00000028060.15	ENSMUST00000200364.5	2388	10	-54	7832	-24	5719	5prime_fragment	FALSE	canonical	3	378	junction_1	24.9847953763884	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGTAGTCTATAATATTAT	6191	False	NA	NA	False	ATTAAA	-14	NA	88593085	88601088	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727
transcript_58501.known	chr3	+	993	6	FSM	ENSMUSG00000028057.15	ENSMUST00000172333.8	993	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	24.0881713710277	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACGCATGAACTCATCAGG	2278	False	NA	NA	False	NA	NA	NA	88624205	88636855	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_88624265_88624632_88624778_88624879_88624966_88633301_88633376_88633586_88633779_88636418
transcript_58502.known	chr3	+	1204	6	FSM	ENSMUSG00000028057.15	ENSMUST00000029692.15	1204	6	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_4	6.67532770731145	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACCCTTCAACCTGAACT	2217	False	NA	74	True	NA	NA	NA	88624144	88637034	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_88624265_88624632_88624778_88624908_88624966_88633301_88633376_88633586_88633779_88636418
transcript_58503.known	chr3	+	2573	6	FSM	ENSMUSG00000028057.15	ENSMUST00000170377.8	2573	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	25.7868183380579	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAAGGTGTCAGATTTTT	2273	False	NA	NA	False	AATACA	-9	NA	88624200	88638348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_88624265_88624632_88624778_88624908_88624966_88633301_88633487_88633586_88633779_88636418
transcript_58510.known	chr3	+	820	5	FSM	ENSMUSG00000028057.15	ENSMUST00000172252.2	820	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	27.5045450789501	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTCATCAGGGCCGTGTC	2285	False	NA	-97	True	NA	NA	NA	88624212	88636863	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_88624265_88624908_88624966_88633301_88633376_88633586_88633779_88636418
transcript_58511.known	chr3	-	5020	5	FSM	ENSMUSG00000068923.15	ENSMUST00000107505.8	5020	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	4.38748219369606	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTGCTACAGCCTGGGTT	NA	False	NA	-6	True	AATAAA	-23	NA	88682471	88652006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88655318_88656085_88656210_88669032_88669857_88679597_88680298_88682410
transcript_58518.known	chr3	+	6190	19	FSM	ENSMUSG00000078684.9	ENSMUST00000135913.2	6190	19	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_8	108.309171094649	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTCCACTTTGACGGGC	NA	False	NA	NA	False	NA	NA	NA	88682522	88732894	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_88682582_88684290_88684822_88691614_88691807_88695643_88695746_88696664_88696706_88702770_88702795_88706921_88707026_88715213_88715410_88715859_88715950_88717975_88718145_88719320_88719466_88720990_88721142_88722938_88723056_88723316_88725073_88726971_88727094_88727354_88729107_88730848_88731105_88731656_88731842_88732696
transcript_5852.known	chr1	-	11130	18	FSM	ENSMUSG00000026605.15	ENSMUST00000171929.8	11130	18	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_7	50.2666247525517	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGAACAGGCTTTGATCC	NA	False	NA	NA	False	NA	NA	NA	189420283	189372802	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_189375000_189378998_189379178_189380807_189381285_189382758_189382919_189383344_189383498_189384457_189387290_189388841_189392270_189394193_189394330_189400712_189400836_189403244_189403374_189404705_189404832_189411135_189411339_189412417_189412704_189414557_189414650_189415041_189415149_189415964_189416162_189417141_189417336_189420172
transcript_58523.known	chr3	-	1875	14	FSM	ENSMUSG00000068922.15	ENSMUST00000126245.2	1875	14	0	0	0	0	multi-exon	FALSE	canonical	3	676	junction_13	37.3331396162909	1645	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATACGCATTTGTACATTTA	NA	False	NA	-7	True	AATAAA	-44	NA	88821306	88816921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88817218_88817436_88817547_88817620_88817726_88817932_88818118_88818189_88818322_88818593_88818747_88818843_88818979_88819070_88819189_88819332_88819421_88819543_88819608_88820009_88820086_88820164_88820235_88820873_88821010_88821099
transcript_5855.nic	chr1	-	514	3	ISM	ENSMUSG00000026605.15	ENSMUST00000165962.2	3001	12	-45	25076	-45	25	5prime_fragment	FALSE	canonical	3	160	junction_1	7.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAAATAGAAAAACTGGAAC	NA	False	NA	NA	False	NA	NA	NA	189420328	189415997	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_189416162_189417141_189417336_189420172
transcript_58551.nic	chr3	-	1690	13	NIC	ENSMUSG00000068921.15	novel	4760	13	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_12	242.200444994545	568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	-7	True	ATTAAA	-17	NA	88857731	88830941	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857422
transcript_58553.known	chr3	-	1409	13	FSM	ENSMUSG00000068921.15	ENSMUST00000173135.8	1409	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	248.441964495176	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACGGACAGCGGCGGTGGC	NA	False	NA	NA	False	NA	NA	NA	88858488	88831134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88858267
transcript_5856.known	chr1	-	1027	1	FSM	ENSMUSG00000026605.15	ENSMUST00000194165.2	1027	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAGGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	189420283	189419256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_189419300_189420300
transcript_5858.known	chr1	-	1680	12	FSM	ENSMUSG00000026603.14	ENSMUST00000027897.8	1680	12	0	0	0	0	multi-exon	FALSE	canonical	3	295	junction_3	24.6985126865085	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGGTTTCTGAATGTCT	NA	False	NA	-6	True	AATAAA	-17	NA	189654560	189612688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_189613064_189614305_189614415_189616020_189616196_189617495_189617617_189618717_189618829_189621011_189621115_189623596_189623665_189628767_189628893_189629619_189629681_189632014_189632126_189642047_189642112_189654303
transcript_58588.known	chr3	-	1375	12	FSM	ENSMUSG00000068921.15	ENSMUST00000107491.11	1375	12	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	248.490151458566	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	-7	True	ATTAAA	-17	NA	88857258	88830941	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88831221_88832600_88832719_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857174
transcript_58589.known	chr3	-	831	8	FSM	ENSMUSG00000068921.15	ENSMUST00000174077.8	831	8	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_7	306.470626484757	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCTCTGGGAGAAGTTGT	NA	False	NA	NA	False	NA	NA	NA	88857605	88835780	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857422
transcript_58594.known	chr3	-	1382	11	FSM	ENSMUSG00000059743.13	ENSMUST00000196709.5	1382	11	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_10	899.425283166979	7387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGTTTTATTCTTGT	NA	False	NA	-3	True	AATAAA	-14	NA	89009195	89000894	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89001151_89001537_89001673_89001758_89001837_89002166_89002240_89002320_89002410_89002660_89002784_89002905_89002987_89006606_89006748_89007975_89008139_89008227_89008444_89009168
transcript_58605.known	chr3	-	1922	9	FSM	ENSMUSG00000041263.15	ENSMUST00000166687.6	1922	9	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_8	11.2354072022335	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATATGTGTCCCTGTG	NA	False	NA	-5	True	AATAAA	-13	NA	88997352	88991287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_88991958_88994079_88994203_88995025_88995576_88996106_88996154_88996306_88996413_88996483_88996659_88996791_88996869_88996975_88997075_88997277
transcript_58613.known	chr3	-	2953	1	FSM	ENSMUSG00000059743.13	ENSMUST00000198239.2	2953	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	89009198	89006245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89006200_89009200
transcript_58614.known	chr3	-	1237	10	FSM	ENSMUSG00000059743.13	ENSMUST00000081848.13	1237	10	0	0	0	0	multi-exon	FALSE	canonical	3	1662	junction_9	235.997175124336	19574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGTTTTATTCTTGT	NA	False	NA	-3	True	AATAAA	-14	NA	89009266	89000894	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89001151_89001537_89001673_89001758_89001837_89002166_89002240_89002320_89002410_89002660_89002784_89002905_89002987_89006606_89006748_89007975_89008139_89009168
transcript_58615.known	chr3	+	2112	13	FSM	ENSMUSG00000068917.13	ENSMUST00000121931.8	2112	13	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_3	89.4627094877463	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCCCCAATCCCTGGAAT	NA	False	NA	18	True	AATAAA	-19	NA	89072146	89084228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89072414_89074341_89074512_89076001_89076231_89076921_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700
transcript_58616.known	chr3	+	2128	13	FSM	ENSMUSG00000068917.13	ENSMUST00000090927.12	2128	13	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_2	141.611043001596	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCCCCAATCCCTGGAAT	NA	False	NA	18	True	AATAAA	-19	NA	89072124	89084228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89072414_89074341_89074512_89076004_89076231_89076924_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700
transcript_5862.nic	chr1	-	1195	9	ISM	ENSMUSG00000026603.14	ENSMUST00000027897.8	1680	12	-64	4697	-64	-143	5prime_fragment	FALSE	canonical	3	299	junction_4	18.6543393075177	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTCTCCTGTGTGCTCG	NA	False	NA	NA	False	AGTAAA	-14	NA	189654624	189617385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_-_189617617_189618717_189618829_189621011_189621115_189623596_189623665_189628767_189628893_189629619_189629681_189632014_189632126_189642047_189642112_189654303
transcript_58620.nnic	chr3	-	689	3	Antisense	novelGene_ENSMUSG00000068917.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	4	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTAGTTTATTCTTTTCTGT	8728	False	NA	NA	False	ATTAAA	-24	NA	89084642	89083265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr3_-_89083629_89083789_89084013_89084539
transcript_58622.known	chr3	+	1475	9	FSM	ENSMUSG00000028049.16	ENSMUST00000120697.8	1475	9	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_2	249.13701049824	804	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACCCATTTCCTGTATCT	NA	False	NA	18	True	ATTAAA	-22	NA	89084796	89090072	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89084965_89085296_89085375_89086398_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605
transcript_58624.known	chr3	+	1489	9	FSM	ENSMUSG00000028049.16	ENSMUST00000029684.15	1489	9	0	0	0	0	multi-exon	TRUE	canonical	3	743	junction_2	141.598022585063	1127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACCCATTTCCTGTATCT	NA	False	NA	18	True	ATTAAA	-22	NA	89084779	89090072	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89084965_89085296_89085375_89086401_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605
transcript_58625.known	chr3	+	1338	8	FSM	ENSMUSG00000028049.16	ENSMUST00000098941.5	1338	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_6	394.282971004949	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCACCCATTTCCTGTAT	NA	False	NA	16	True	ATTAAA	-20	NA	89084826	89090070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89084965_89085296_89085375_89086401_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89089232_89089351_89089605
transcript_58630.known	chr3	+	3083	12	FSM	ENSMUSG00000032657.16	ENSMUST00000041913.13	3083	12	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_5	4.5924839782964	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGGAGTATTCTGTTAT	1723	False	NA	9	True	AATAAA	-20	NA	89090509	89096598	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89091256_89091458_89091516_89091719_89091831_89091936_89092057_89092195_89092304_89092740_89092917_89093040_89093141_89094085_89094156_89094365_89094912_89095382_89095452_89095529_89095784_89095872
transcript_58635.known	chr3	+	1978	12	FSM	ENSMUSG00000028048.12	ENSMUST00000197738.5	1978	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	146.128834812423	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTGTGCTATCTGTGAC	NA	False	NA	3	True	ATTAAA	-13	NA	89110242	89115988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89110394_89110498_89110668_89110778_89110849_89111291_89111484_89111581_89111729_89112753_89112888_89113098_89113272_89113440_89113676_89114533_89114759_89115090_89115295_89115622_89115736_89115823
transcript_58636.known	chr3	+	1938	12	FSM	ENSMUSG00000028048.12	ENSMUST00000167998.2	1938	12	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	111.217603696091	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTGTGCTATCTGTGAC	NA	False	NA	3	True	ATTAAA	-13	NA	89110246	89115988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89110394_89110498_89110668_89110778_89110849_89111291_89111484_89111581_89111729_89112753_89112888_89113098_89113272_89113440_89113676_89114533_89114759_89115130_89115295_89115618_89115736_89115823
transcript_58638.known	chr3	+	1779	11	FSM	ENSMUSG00000028048.12	ENSMUST00000077367.11	1779	11	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_1	28.1177879642051	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGCTCCTGTGCTATCTGTG	NA	False	NA	1	True	ATTAAA	-11	NA	89110234	89115986	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89110394_89110778_89110849_89111291_89111484_89111581_89111729_89112753_89112888_89113098_89113272_89113440_89113676_89114533_89114759_89115130_89115295_89115618_89115736_89115823
transcript_58648.known	chr3	+	3190	23	FSM	ENSMUSG00000028047.12	ENSMUST00000029682.11	3190	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	2.85061976732276	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGTGCAATTGTTTATTT	5777	False	NA	5	True	CATAAA	-19	NA	89122486	89134144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89122632_89123987_89124195_89124991_89125249_89125334_89125438_89126163_89126191_89126353_89126437_89126519_89126572_89126695_89126845_89127161_89127303_89127458_89127537_89128264_89128418_89128640_89128752_89128833_89128942_89130309_89130470_89130711_89130831_89130937_89130991_89131266_89131461_89131592_89131772_89131883_89131933_89132116_89132314_89132558_89132732_89133610_89133751_89133832
transcript_58656.known	chr3	+	426	3	FSM	ENSMUSG00000028047.12	ENSMUST00000126372.2	426	3	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	4	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTCCAGGGAAGAGTGTG	NA	False	NA	NA	False	NA	NA	NA	89132483	89133870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89132732_89133610_89133751_89133832
transcript_58659.known	chr3	+	455	2	FSM	ENSMUSG00000028047.12	ENSMUST00000153129.2	455	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCCCAGGAAAGACAACAGC	NA	False	NA	-46	True	NA	NA	NA	89133556	89134093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89133751_89133832
transcript_58660.known	chr3	-	1197	7	FSM	ENSMUSG00000064068.16	ENSMUST00000119222.9	1197	7	0	0	0	0	multi-exon	FALSE	canonical	3	739	junction_1	41.3417330174835	201	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAACTGGGATCAAAGAAT	NA	False	NA	-27	True	AATAAA	-10	NA	89121214	89116398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89116729_89116811_89116967_89117413_89117491_89117572_89117756_89117890_89117984_89119989_89120254_89121119
transcript_58661.known	chr3	+	2242	7	FSM	ENSMUSG00000042784.10	ENSMUST00000041142.4	2242	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	1.60727512683216	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCAGCTGTGGTTTTTCAT	205	False	NA	8	True	AATAAA	-21	NA	89136363	89140688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89136485_89137217_89138522_89138619_89138673_89138807_89138942_89139069_89139192_89139272_89139423_89140330
transcript_58663.known	chr3	-	2721	9	FSM	ENSMUSG00000042766.18	ENSMUST00000090924.13	2721	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.05326872164704	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTTTTCCTGGAGTGA	7672	False	NA	NA	False	AATAAA	-18	NA	89152506	89141483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89142600_89144923_89145227_89146204_89146327_89146577_89146832_89149473_89149570_89149681_89149826_89150890_89151235_89151456_89151719_89152426
transcript_58673.known	chr3	+	582	5	FSM	ENSMUSG00000042747.13	ENSMUST00000168900.3	582	5	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	789.56613877496	554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGTCTTTGTAGCTGTG	7591	False	NA	7	True	AATAAA	-1	NA	89153740	89157016	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89153901_89154087_89154240_89154371_89154436_89156380_89156448_89156877
transcript_58680.known	chr3	+	1172	5	FSM	ENSMUSG00000042747.13	ENSMUST00000040888.12	1172	5	0	0	0	0	multi-exon	FALSE	canonical	3	1428	junction_1	178.055293378209	9224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACCTAACTGGTGTGCGT	7123	False	NA	NA	False	AATACA	-17	NA	89153272	89157213	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89153823_89154084_89154240_89154371_89154436_89156380_89156448_89156877
transcript_58689.known	chr3	+	441	1	FSM	ENSMUSG00000042737.10	ENSMUST00000137975.2	441	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1241	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTGTAGTTTTGAGTAT	6864	False	NA	19	True	ATTAAA	-20	NA	89173945	89174386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89173900_89174400
transcript_58690.known	chr3	+	404	2	FSM	ENSMUSG00000042737.10	ENSMUST00000040824.2	404	2	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_1	0	7798	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTTGTGTAGTTTTGAGT	6777	False	NA	17	True	ATTAAA	-18	NA	89173858	89174384	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89173914_89174035
transcript_58693.known	chr3	-	1045	5	FSM	ENSMUSG00000027953.14	ENSMUST00000148095.2	1045	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	63.1124987621311	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTGCAGAGTGATGTGTT	NA	False	NA	-33	True	AATAAA	-15	NA	89177876	89175554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89175906_89175979_89176100_89176356_89176519_89177133_89177447_89177777
transcript_58695.known	chr3	-	1022	6	FSM	ENSMUSG00000027953.14	ENSMUST00000029565.11	1022	6	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_5	11.5481600266016	580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGAGTGATGTGTTCT	NA	False	NA	-31	True	AATAAA	-17	NA	89177877	89175552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89175906_89175979_89176100_89176356_89176519_89177133_89177258_89177368_89177447_89177692
transcript_58696.known	chr3	-	1086	5	FSM	ENSMUSG00000027953.14	ENSMUST00000132445.8	1086	5	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_4	12.4373429638327	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGAGTGATGTGTTCT	NA	False	NA	-31	True	AATAAA	-17	NA	89177830	89175552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89175906_89175979_89176100_89176356_89176519_89177133_89177447_89177692
transcript_58697.known	chr3	-	1332	4	FSM	ENSMUSG00000027953.14	ENSMUST00000144777.8	1332	4	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_3	10.1434160364686	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTGCAGAGTGATGTGTT	NA	False	NA	-33	True	AATAAA	-15	NA	89177832	89175554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89175906_89175979_89176100_89176356_89176519_89177133
transcript_58698.known	chr3	-	1176	5	FSM	ENSMUSG00000027953.14	ENSMUST00000133575.8	1176	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	61.3697808371514	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGAGTGATGTGTTCT	NA	False	NA	-31	True	AATAAA	-17	NA	89177833	89175552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89175906_89175979_89176100_89176356_89176606_89177133_89177447_89177692
transcript_58699.known	chr3	-	785	5	FSM	ENSMUSG00000027953.14	ENSMUST00000107460.8	785	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	61.7758043249944	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGAGTGATGTGTTCT	NA	False	NA	-31	True	AATAAA	-17	NA	89177802	89175552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89175906_89175979_89176100_89177133_89177258_89177368_89177447_89177692
transcript_5870.known	chr1	+	3714	9	FSM	ENSMUSG00000026634.17	ENSMUST00000066632.14	3714	9	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	32.0263563334951	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTGTGGACAGAGAAGTT	NA	False	NA	16	True	AATAAA	-18	NA	190660688	190679159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_190660956_190665063_190665390_190669640_190669898_190671283_190671354_190673070_190673493_190674317_190674445_190675026_190675085_190675973_190676138_190677136
transcript_58700.known	chr3	-	1480	5	FSM	ENSMUSG00000027954.10	ENSMUST00000029566.9	1480	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	2.77263412660235	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTTCTGCCCCACCATG	1666	False	NA	NA	False	AATAAA	-21	NA	89186952	89179039	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89179912_89180078_89180130_89180263_89180330_89183436_89183733_89186757
transcript_58705.known	chr3	-	2893	22	FSM	ENSMUSG00000028041.18	ENSMUST00000107448.9	2893	22	0	0	0	0	multi-exon	TRUE	canonical	3	22	junction_3	33.3036602620203	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCTCCTGGAAGCTGGGT	NA	False	NA	-11	True	AATAAA	-20	NA	89257296	89246946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89247261_89247361_89247487_89247707_89247780_89248814_89248885_89249243_89249383_89249595_89249669_89250419_89250498_89250694_89250891_89250979_89251285_89251424_89251518_89251731_89251907_89252012_89252162_89252585_89252671_89252799_89252970_89253075_89253145_89253249_89253316_89254183_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
transcript_58706.known	chr3	-	2799	21	FSM	ENSMUSG00000028041.18	ENSMUST00000074582.7	2799	21	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	31.553882486946	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAATGTGTCTGCTCCTGGA	NA	False	NA	-19	True	AATAAA	-12	NA	89257282	89246954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89247261_89247361_89247487_89248814_89248885_89249243_89249383_89249595_89249669_89250419_89250498_89250694_89250891_89250979_89251285_89251424_89251518_89251731_89251907_89252012_89252162_89252585_89252671_89252799_89252970_89253075_89253145_89253249_89253316_89254183_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
transcript_58707.known	chr3	-	1034	6	FSM	ENSMUSG00000028041.18	ENSMUST00000155295.8	1034	6	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_5	16.0549057923116	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATAGGTTTTGATTTGCT	NA	False	NA	NA	False	ATTAAA	-24	NA	89257267	89253834	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
transcript_58710.known	chr3	-	1599	4	FSM	ENSMUSG00000028040.8	ENSMUST00000029674.8	1599	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	2.62466929133727	182	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCCTTCTTTGTGTGGCC	1612	False	NA	NA	False	AATAAA	-14	NA	89245335	89240696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89241740_89242088_89242158_89242483_89242780_89245144
transcript_58714.nic	chr3	-	861	3	ISM	ENSMUSG00000028041.18	ENSMUST00000148068.8	554	4	327	7	89	0	3prime_fragment	FALSE	canonical	3	59	junction_2	51.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAATGTGTCTGCTCCTGGA	NA	False	NA	-19	True	AATAAA	-12	NA	89248137	89246954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_-_89247261_89247361_89247487_89247707
transcript_58715.known	chr3	-	507	2	FSM	ENSMUSG00000028041.18	ENSMUST00000139705.2	507	2	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGATGCTGGGGAGGGGCCG	NA	False	NA	-116	True	ACTAAA	-12	NA	89247659	89247051	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89247261_89247361
transcript_58718.nnic	chr3	+	1574	9	NIC	ENSMUSG00000109293.2	novel	2285	16	NA	NA	5533	94	combination_of_known_splicesites	FALSE	canonical	1	2	junction_3	4.26468052730799	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGAATCTTAAATTATTAT	2907	False	NA	NA	False	AATAAA	-22	NA	89274814	89284950	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_+_89275242_89275397_89275556_89276011_89276177_89278006_89278108_89278839_89278971_89279954_89280083_89280529_89280624_89280731_89280888_89284736
transcript_58721.nic	chr3	+	932	6	NIC	ENSMUSG00000109293.2	novel	2285	16	NA	NA	8617	94	intron_retention	FALSE	canonical	2	5	junction_5	3.74165738677394	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGAATCTTAAATTATTAT	5991	False	NA	NA	False	AATAAA	-22	NA	89277898	89284950	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_+_89278108_89278839_89278971_89279954_89280083_89280529_89280624_89280731_89280888_89284736
transcript_58731.known	chr3	+	923	2	FSM	ENSMUSG00000074466.13	ENSMUST00000145400.8	923	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGTTGTAGGGTTGTTT	5257	False	NA	NA	False	NA	NA	NA	89299156	89305531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89299814_89305265
transcript_58733.known	chr3	+	599	2	FSM	ENSMUSG00000074466.13	ENSMUST00000152143.2	599	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGTTGTAGGGTTGTTT	5377	False	NA	NA	False	NA	NA	NA	89299276	89305531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89299610_89305265
transcript_58736.known	chr3	+	925	2	FSM	ENSMUSG00000074466.13	ENSMUST00000126926.2	925	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATATATATATTTTTTT	7697	False	NA	NA	False	NA	NA	NA	89301596	89306086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89301701_89305265
transcript_5874.known	chr1	+	3673	9	FSM	ENSMUSG00000026634.17	ENSMUST00000110899.7	3673	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	60.2136820000239	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTGTGGACAGAGAAGTT	NA	False	NA	16	True	AATAAA	-18	NA	190660688	190679159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_190660915_190665063_190665390_190669640_190669898_190671283_190671354_190673070_190673493_190674317_190674445_190675026_190675085_190675973_190676138_190677136
transcript_58742.nic	chr3	-	2000	8	NIC	ENSMUSG00000042642.14	novel	2238	8	NA	NA	2	-415	combination_of_known_junctions	FALSE	canonical	2	9	junction_7	114.072300739129	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTGGTGCCTGTTGCTCT	3746	False	NA	-15	True	AGTAAA	-18	NA	89319168	89310388	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89318867
transcript_58743.known	chr3	-	2238	8	FSM	ENSMUSG00000042642.14	ENSMUST00000107426.8	2238	8	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_7	99.0019583397321	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCCTTCTGCTGAGCTGC	3738	False	NA	NA	False	AATAAA	-21	NA	89319176	89309973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89319052
transcript_58744.nic	chr3	-	1848	8	NIC	ENSMUSG00000042642.14	novel	2238	8	NA	NA	-96	-415	combination_of_known_junctions	FALSE	canonical	3	35	junction_7	105.155666921542	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTGGTGCCTGTTGCTCT	3641	False	NA	-15	True	AGTAAA	-18	NA	89319273	89310388	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89319124
transcript_5875.nic	chr1	+	2350	9	NIC	ENSMUSG00000026634.17	novel	3343	8	NA	NA	0	-1180	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	46.1652940530005	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGGTCAA	NA	False	NA	NA	False	NA	NA	NA	190661018	190677979	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_190661102_190665063_190665390_190669640_190669898_190671283_190671354_190673070_190673493_190674317_190674445_190675026_190675085_190675973_190676138_190677136
transcript_58755.known	chr3	-	2892	8	FSM	ENSMUSG00000042642.14	ENSMUST00000129308.9	2892	8	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_7	45.7504321380282	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGAATGAGGGCATGTGTG	3744	False	NA	0	True	AATAAA	-35	NA	89319170	89309275	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89319090
transcript_58756.known	chr3	-	488	3	FSM	ENSMUSG00000042642.14	ENSMUST00000162701.2	488	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	149	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGGAGGAGCTCAAACCAC	3737	False	NA	NA	False	NA	NA	NA	89319177	89316261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89316474_89318464_89318688_89319124
transcript_58759.known	chr3	-	766	3	FSM	ENSMUSG00000028044.7	ENSMUST00000107422.2	766	3	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	1287.5	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGTATTGGAAATTTTGC	NA	False	NA	23	True	NA	NA	NA	89325324	89322863	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89323271_89323580_89323709_89325093
transcript_5876.nic	chr1	+	3064	9	NIC	ENSMUSG00000026634.17	novel	3343	8	NA	NA	0	-466	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	46.1652940530005	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTACTCATTTATTCCAG	NA	False	NA	16	True	AATAAA	-16	NA	190661018	190678693	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_+_190661102_190665063_190665390_190669640_190669898_190671283_190671354_190673070_190673493_190674317_190674445_190675026_190675085_190675973_190676138_190677136
transcript_58760.known	chr3	-	359	3	FSM	ENSMUSG00000028044.7	ENSMUST00000183484.2	359	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1321	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGTGACCATGTTGCTTTC	NA	False	NA	NA	False	NA	NA	NA	89325526	89323150	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89323271_89323580_89323709_89325415
transcript_58762.known	chr3	-	849	3	FSM	ENSMUSG00000028044.7	ENSMUST00000029679.4	849	3	0	0	0	0	multi-exon	FALSE	canonical	3	2335	junction_2	153.5	21805	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTGTGGTTATAAGACTGT	NA	False	NA	-12	True	ATTAAA	-22	NA	89325690	89322778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89323271_89323580_89323709_89325461
transcript_58765.known	chr3	+	3079	13	FSM	ENSMUSG00000042626.14	ENSMUST00000107417.9	3079	13	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	89.6222008705928	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGGCCTCTCAACTCCTC	NA	False	NA	20	True	ATTAAA	-17	NA	89325920	89337322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89326017_89329484_89329653_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
transcript_58771.nic	chr3	+	1603	12	NIC	ENSMUSG00000042626.14	novel	3250	13	NA	NA	-43	-606	combination_of_known_junctions	TRUE	canonical	3	123	junction_1	129.584906273394	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTAACTTGTGGGACCT	NA	False	NA	NA	False	NA	NA	NA	89325706	89335800	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_+_89326017_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
transcript_58772.nic	chr3	+	2963	12	NIC	ENSMUSG00000042626.14	novel	3250	13	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	123	junction_1	129.584906273394	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGGCCTCTCAACTCCTC	NA	False	NA	20	True	ATTAAA	-17	NA	89325868	89337322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_+_89326017_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
transcript_58773.known	chr3	+	2617	12	FSM	ENSMUSG00000042626.14	ENSMUST00000094378.10	2617	12	0	0	0	0	multi-exon	FALSE	canonical	3	501	junction_1	37.6308735565373	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCACGCCTTTAATCACAGC	NA	False	NA	NA	False	NA	NA	NA	89328934	89336406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89329653_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
transcript_58777.known	chr3	+	3198	3	FSM	ENSMUSG00000047824.14	ENSMUST00000060061.11	3198	3	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_1	12.5	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAAGGACTCCTTTGTTC	NA	False	NA	NA	False	AATAAA	-16	NA	89337567	89342435	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89338037_89338433_89338484_89339756
transcript_58779.nic	chr3	+	2509	11	NIC	ENSMUSG00000042613.10	novel	4479	11	NA	NA	-2	-1993	combination_of_known_junctions	FALSE	canonical	3	13	junction_2	22.5690052948729	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAGAAGAAGAAAAA	4366	False	NA	NA	False	NA	NA	NA	89344010	89356266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_+_89344088_89346823_89346909_89350407_89350556_89350758_89350824_89350902_89351063_89352758_89352987_89353098_89353123_89353397_89353481_89353586_89353719_89354352_89355573_89355979
transcript_58780.known	chr3	+	4479	11	FSM	ENSMUSG00000042613.10	ENSMUST00000038942.10	4479	11	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	11.4367827643966	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGGTTCTTCTCTTCTC	4368	False	NA	35	True	AATAAA	-24	NA	89344012	89358259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89344088_89346823_89346909_89350428_89350556_89350758_89350824_89350902_89351063_89352758_89352987_89353098_89353123_89353397_89353481_89353586_89353719_89354352_89355573_89355979
transcript_58796.known	chr3	+	1156	5	FSM	ENSMUSG00000027952.17	ENSMUST00000184515.2	1156	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	260.03076741032	1701	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCTCAGAGCTGGAGACT	593	False	NA	14	True	AATAAA	-13	NA	89366877	89376313	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89367194_89369188_89369253_89371602_89371756_89374853_89374984_89375820
transcript_58820.known	chr3	+	1194	5	FSM	ENSMUSG00000027952.17	ENSMUST00000029564.12	1194	5	0	0	0	0	multi-exon	FALSE	canonical	3	519	junction_1	43.1878165690279	5695	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTGGAGACTGATGATT	140	False	NA	21	True	AATAAA	-20	NA	89366424	89376320	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89366772_89369188_89369253_89371602_89371756_89374853_89374984_89375820
transcript_58821.nnic	chr3	+	714	4	NNC	ENSMUSG00000000794.10	novel	8314	2	NA	NA	-6663	-353	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	0.816496580927726	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCATAGGTCTTAAGATGCA	NA	False	NA	NA	False	AATAAA	-23	NA	89563161	89574715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_89563354_89568427_89568556_89570020_89570091_89574391
transcript_58824.nnic	chr3	+	539	3	Genic_Genomic	ENSMUSG00000000794.10	novel	2884	8	NA	NA	4146	4334	multi-exon	FALSE	non_canonical	0	0	junction_1	0	72	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCTCCCCACCCCACCAC	NA	False	NA	NA	False	NA	NA	NA	89573970	89586773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr3_+_89574143_89574242_89574446_89586609
transcript_58826.known	chr3	+	5909	15	FSM	ENSMUSG00000027951.17	ENSMUST00000098924.9	5909	15	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_7	20.181320925195	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACTGTTACAAAGTTTTAT	NA	False	NA	12	True	AATAAA	-16	NA	89622328	89660753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89622458_89642148_89643581_89645296_89645481_89646476_89646626_89647139_89647279_89647400_89647586_89652682_89652909_89653126_89653299_89653871_89653966_89654478_89654602_89654844_89654979_89656943_89657127_89657542_89657656_89657934_89658063_89658235
transcript_58827.known	chr3	+	5871	15	FSM	ENSMUSG00000027951.17	ENSMUST00000107405.6	5871	15	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	32.9626411909864	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACTGTTACAAAGTTTTAT	NA	False	NA	12	True	AATAAA	-16	NA	89638054	89660753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89638146_89642148_89643581_89645296_89645481_89646476_89646626_89647139_89647279_89647400_89647586_89652682_89652909_89653126_89653299_89653871_89653966_89654478_89654602_89654844_89654979_89656943_89657127_89657542_89657656_89657934_89658063_89658235
transcript_58828.known	chr3	+	3077	13	FSM	ENSMUSG00000042572.13	ENSMUST00000038356.13	3077	13	0	0	0	0	multi-exon	TRUE	canonical	3	944	junction_1	76.7428968844819	168	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGGTTCATGTCCACTT	NA	False	NA	NA	False	AATAAA	-43	NA	89680922	89691307	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89681346_89683383_89683489_89683818_89683924_89684537_89684589_89686735_89686877_89687061_89687147_89687743_89687805_89687993_89688085_89688195_89688255_89688353_89688403_89688674_89688771_89689077_89689145_89689563
transcript_58842.known	chr3	-	3975	28	FSM	ENSMUSG00000042520.17	ENSMUST00000196843.5	3975	28	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_1	196.719480946381	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTACCTTCAGCCTCTGC	3560	False	NA	99	True	AAAAAG	-18	NA	89959769	89907599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89908299_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
transcript_5885.known	chr1	+	1585	3	FSM	ENSMUSG00000026634.17	ENSMUST00000137608.8	1585	3	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	37.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAATTGAAGA	NA	False	NA	NA	False	NA	NA	NA	190660688	190670632	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_190660956_190665063_190665390_190669640
transcript_58861.known	chr3	-	4073	28	FSM	ENSMUSG00000042520.17	ENSMUST00000064639.15	4073	28	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_1	252.379539778417	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTCAGCCTCTGCCCATT	3547	False	NA	NA	False	AAAAAG	-23	NA	89959782	89907594	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89908299_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938602_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959696
transcript_58867.known	chr3	-	3516	26	FSM	ENSMUSG00000042520.17	ENSMUST00000195995.5	3516	26	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_21	259.732465433184	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTCTGCGTTCTTTCCGT	3550	False	NA	-4	True	AATAAA	-19	NA	89959779	89913526	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89913925_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946121_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959696
transcript_58876.known	chr3	+	1545	10	FSM	ENSMUSG00000118504.2	ENSMUST00000239076.2	1545	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_7	192.823529633307	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGATTTGGGCTGGCAGG	NA	False	NA	7	True	AATAAA	-16	NA	89960210	89973179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89960427_89960814_89960917_89963513_89963632_89963835_89963890_89965791_89965959_89966048_89966108_89968944_89969240_89970515_89970557_89971731_89971862_89972816
transcript_5888.known	chr1	+	668	3	FSM	ENSMUSG00000026634.17	ENSMUST00000135364.7	668	3	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_1	64	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTGTGTAAAGCAGTATTA	NA	False	NA	NA	False	AAGAAA	-23	NA	190661018	190669899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_190661102_190665063_190665390_190669640
transcript_58886.known	chr3	+	1411	7	FSM	ENSMUSG00000027942.18	ENSMUST00000162114.8	1411	7	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_6	165.248718267008	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGAGTTGTTTGGGCTTTG	NA	False	NA	NA	False	ATTAAA	-43	NA	89960148	89968301	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89960427_89960814_89960917_89963513_89963632_89963835_89963890_89965791_89965959_89966048_89966108_89967668
transcript_58887.known	chr3	+	2510	7	FSM	ENSMUSG00000027942.18	ENSMUST00000160640.8	2510	7	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_3	33.2549077413979	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAGGAAAACACAGAGCA	NA	False	NA	NA	False	NA	NA	NA	89960120	89970648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89960427_89960814_89960917_89963513_89963632_89963835_89963890_89965791_89965959_89966048_89966108_89968944
transcript_58894.known	chr3	-	855	7	FSM	ENSMUSG00000027944.14	ENSMUST00000198782.2	855	7	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_6	657.328853940113	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTCTTAAACAGAGGCCTT	7498	False	NA	NA	False	NA	NA	NA	89905696	89902931	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905044_89905311_89905631
transcript_5890.known	chr1	+	1649	2	FSM	ENSMUSG00000097845.3	ENSMUST00000192407.2	1649	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAAAATGAGTACAGAAA	NA	False	NA	NA	False	NA	NA	NA	190757547	190761978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_190758767_190761548
transcript_58904.known	chr3	-	648	6	FSM	ENSMUSG00000027944.14	ENSMUST00000197725.5	648	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_5	740.896591974885	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCCCTTCCTGTTGCCCA	7267	False	NA	NA	False	NA	NA	NA	89905927	89902900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905834
transcript_58912.known	chr3	-	410	5	FSM	ENSMUSG00000042520.17	ENSMUST00000196633.5	410	5	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_4	452.040028647906	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGACAAAAGGATGGTGGA	3940	False	NA	NA	False	AAGAAA	-8	NA	89959389	89946286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959335
transcript_58916.known	chr3	+	640	4	FSM	ENSMUSG00000105552.2	ENSMUST00000200257.2	640	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	5.18544972870135	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGAATTCTGACCTTTTC	NA	False	NA	NA	False	AAAACA	-13	NA	89906066	89908632	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89906229_89906451_89906605_89907478_89907593_89908421
transcript_5892.known	chr1	+	443	3	FSM	ENSMUSG00000057072.12	ENSMUST00000192151.6	443	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGTCTTCAATGTCTGCA	7874	False	NA	NA	False	AATAAA	-10	NA	190768835	190775132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_190768910_190771741_190772054_190775075
transcript_58920.known	chr3	-	1280	6	FSM	ENSMUSG00000027944.14	ENSMUST00000199014.5	1280	6	0	0	0	0	multi-exon	FALSE	canonical	3	1706	junction_4	119.761429517186	621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGGTCTTAGTCTTGGTT	7201	False	NA	NA	False	AATAAA	-15	NA	89905993	89902763	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89905311_89905834
transcript_58921.known	chr3	-	1092	7	FSM	ENSMUSG00000027944.14	ENSMUST00000197767.5	1092	7	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_5	640.345588118027	2646	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTTAGTCTTGGTTTTGT	7221	False	NA	NA	False	AATAAA	-19	NA	89905973	89902759	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904873_89905044_89905311_89905834
transcript_58922.known	chr3	-	857	6	FSM	ENSMUSG00000027944.14	ENSMUST00000197786.5	857	6	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	742.362876226984	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGTCTTAGTCTTGGTTT	7210	False	NA	NA	False	AATAAA	-16	NA	89905984	89902762	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89905108_89905311_89905834
transcript_58923.known	chr3	-	2271	4	FSM	ENSMUSG00000042520.17	ENSMUST00000198282.2	2271	4	0	0	0	0	multi-exon	FALSE	canonical	3	707	junction_3	238.630816674349	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACTCAAAAAAAGAAAAAA	3520	False	NA	NA	False	NA	NA	NA	89959809	89949102	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89951118_89952160_89952239_89955076_89955207_89959761
transcript_58924.known	chr3	+	1080	6	FSM	ENSMUSG00000027942.18	ENSMUST00000029552.13	1080	6	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_3	34.2496715312717	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-4	NA	89960143	89966404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89960427_89960814_89960917_89963513_89963632_89963835_89963890_89965791_89965959_89966048
transcript_58925.known	chr3	-	395	2	FSM	ENSMUSG00000027944.14	ENSMUST00000197481.2	395	2	0	0	0	0	multi-exon	FALSE	canonical	3	1953	junction_1	0	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGTCTTAGTCTTGGTTT	9934	False	NA	NA	False	AATAAA	-16	NA	89903260	89902762	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_89903018_89903120
transcript_5893.known	chr1	-	1196	10	FSM	ENSMUSG00000026632.18	ENSMUST00000027945.6	1196	10	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_3	9.99011857466179	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGTATTTTTAAAAAAGGAA	NA	False	NA	-4	True	TATAAA	-16	NA	190795102	190778038	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_190778518_190781478_190781557_190785056_190785170_190787052_190787109_190787458_190787569_190788559_190788623_190791023_190791109_190792309_190792384_190793421_190793455_190794997
transcript_58933.known	chr3	+	2230	8	FSM	ENSMUSG00000027940.19	ENSMUST00000029549.16	2230	8	0	0	0	0	multi-exon	FALSE	canonical	3	3249	junction_3	140.088164659085	3524	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCGGCTTGACTTTGTTA	NA	False	NA	18	True	AATAAA	-21	NA	89986846	90008208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834
transcript_5894.known	chr1	-	1242	10	FSM	ENSMUSG00000026632.18	ENSMUST00000110893.10	1242	10	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	11.4309521329882	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATGATTTGTCTTGGACA	NA	False	NA	12	True	TATAAA	-32	NA	190795129	190778022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_190778518_190781478_190781560_190785056_190785170_190787052_190787109_190787458_190787569_190788559_190788623_190791023_190791109_190792309_190792384_190793421_190793455_190794997
transcript_58955.known	chr3	+	291	1	FSM	ENSMUSG00000104649.2	ENSMUST00000198020.2	291	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	728	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATCATTCTCAAGTCAGT	NA	False	NA	-55	True	NA	NA	NA	90034073	90034364	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_90034100_90034400
transcript_58956.known	chr3	-	458	5	FSM	ENSMUSG00000090733.7	ENSMUST00000195998.5	458	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	9237.94281753248	2068	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTCTTGTTTAACTGG	NA	False	NA	-2	True	AATAAA	-19	NA	90120954	90119973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_90120061_90120240_90120352_90120499_90120609_90120687_90120801_90120916
transcript_58958.known	chr3	-	546	4	FSM	ENSMUSG00000090733.7	ENSMUST00000200305.2	546	4	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	8789.54951443285	2264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTTTGTCTTGTTTAA	NA	False	NA	-6	True	AATAAA	-15	NA	90120930	90119977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_90120061_90120240_90120352_90120499_90120609_90120687
transcript_58960.known	chr3	-	528	4	FSM	ENSMUSG00000090733.7	ENSMUST00000197028.5	528	4	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_3	8817.37059571742	2020	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTCTTGTTTAACTGG	NA	False	NA	-2	True	AATAAA	-19	NA	90120940	90119973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_90120061_90120240_90120352_90120499_90120806_90120916
transcript_58961.known	chr3	-	329	4	FSM	ENSMUSG00000090733.7	ENSMUST00000197361.5	329	4	0	0	0	0	multi-exon	FALSE	canonical	2	296	junction_1	8530.83639249725	917	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTTTGTCTTGTTTAA	NA	False	NA	-6	True	AATAAA	-15	NA	90120955	90119977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_90120048_90120240_90120352_90120499_90120609_90120916
transcript_58962.known	chr3	-	640	3	FSM	ENSMUSG00000090733.7	ENSMUST00000199031.5	640	3	0	0	0	0	multi-exon	FALSE	canonical	3	15374	junction_1	2726.5	2187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTCTTGTTTAACTGG	NA	False	NA	-2	True	AATAAA	-19	NA	90120941	90119973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_90120061_90120240_90120352_90120499
transcript_58965.known	chr3	+	1415	8	FSM	ENSMUSG00000027935.15	ENSMUST00000107373.8	1415	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	8.56666534317997	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGGCAAGTTGATTTCT	NA	False	NA	NA	False	AATACA	-17	NA	90121001	90133692	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_90121130_90129543_90129605_90130833_90130895_90131096_90131175_90131800_90131891_90132008_90132075_90132154_90132209_90132815
transcript_58968.known	chr3	+	1107	8	FSM	ENSMUSG00000027935.15	ENSMUST00000065418.7	1107	8	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	3.88613443106727	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTCCCATTTGCATTACT	NA	False	NA	6	True	ATTAAA	-18	NA	90128093	90133276	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_90128330_90129543_90129605_90130833_90130895_90131096_90131175_90131800_90131891_90132008_90132075_90132154_90132209_90132815
transcript_5897.nic	chr1	-	462	5	NIC	ENSMUSG00000026632.18	novel	342	4	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	15.9216833280907	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGAATGCATTGGTATGCA	NA	False	NA	NA	False	NA	NA	NA	190795141	190790095	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_190790222_190791023_190791109_190792309_190792384_190793421_190793455_190794997
transcript_58971.known	chr3	+	762	1	FSM	ENSMUSG00000027935.15	ENSMUST00000198809.2	762	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGACACGTGCATTGCTT	NA	False	NA	NA	False	AATAAA	-19	NA	90121016	90121778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_90121000_90121800
transcript_58976.known	chr3	+	1101	5	FSM	ENSMUSG00000027937.16	ENSMUST00000029546.15	1101	5	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_4	18.2260116317312	1694	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTAGTGTAATCATTTG	NA	False	NA	4	True	AATAAA	-14	NA	90138903	90143145	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_90139348_90139501_90139540_90139735_90139819_90141229_90141310_90142689
transcript_58977.known	chr3	-	1553	10	FSM	ENSMUSG00000027938.12	ENSMUST00000029547.10	1553	10	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_9	2.74873708374511	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCCAGCTTGGAAATTGT	NA	False	NA	NA	False	NA	NA	NA	90150819	90144806	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_90145229_90145356_90145454_90145618_90145704_90145789_90145859_90145951_90146059_90146190_90146287_90149238_90149361_90149517_90149753_90150028_90150144_90150614
transcript_58978.known	chr3	-	1404	10	FSM	ENSMUSG00000027938.12	ENSMUST00000107369.2	1404	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_7	1.89215404065849	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCCAAGTTTTTCACTATG	NA	False	NA	NA	False	AATAAA	-19	NA	90150450	90144876	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_90145229_90145356_90145454_90145618_90145704_90145789_90145859_90145951_90146059_90146190_90146287_90149238_90149361_90149517_90149753_90150028_90150144_90150324
transcript_58979.known	chr3	+	2364	4	FSM	ENSMUSG00000052310.10	ENSMUST00000015467.9	2364	4	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	8.60232526704263	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTATGGTATCTGATTCT	NA	False	NA	-1	True	AATAAA	-16	NA	90155478	90160919	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_90155567_90156252_90156471_90156632_90156764_90158992
transcript_5898.known	chr1	-	1089	9	FSM	ENSMUSG00000026632.18	ENSMUST00000085633.12	1089	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	13.3860935302276	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTTTTAAAAAAGGAATGAT	NA	False	NA	0	True	TATAAA	-20	NA	190795101	190778034	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_190778518_190781478_190781560_190787052_190787109_190787458_190787569_190788559_190788623_190791023_190791109_190792309_190792384_190793421_190793455_190794997
transcript_58981.known	chr3	+	2747	14	FSM	ENSMUSG00000027936.19	ENSMUST00000029545.15	2747	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	29.1612533719806	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGCTTGGCTATTTGGT	NA	False	NA	NA	False	AATAAA	-19	NA	90161469	90171432	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_90161866_90164423_90164526_90164601_90164719_90165771_90165834_90166460_90166530_90166692_90166800_90166889_90166920_90167069_90167135_90167260_90167311_90167432_90167678_90168003_90168411_90169757_90170022_90170477_90170665_90170786
transcript_58984.known	chr3	+	7438	11	FSM	ENSMUSG00000042390.10	ENSMUST00000199754.5	7438	11	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	3.87814388593306	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTGACTTGTGTTTTAG	NA	False	NA	11	True	AATAAA	-23	NA	90200484	90270714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_90200732_90248962_90249302_90255873_90256004_90256661_90256794_90257693_90257826_90258710_90258882_90259120_90259437_90261614_90261818_90262981_90263093_90263437_90263556_90265175
transcript_58987.known	chr3	-	2259	10	FSM	ENSMUSG00000027932.15	ENSMUST00000029541.12	2259	10	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_6	21.4101625806157	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGCCCATCTTCGAGAGT	NA	False	NA	-17	True	AATAAA	-14	NA	90297234	90292545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_90292841_90293556_90293688_90293786_90293885_90294054_90294254_90294370_90294462_90294561_90294757_90294942_90295068_90295634_90295794_90295996_90296207_90296478
transcript_58988.known	chr3	-	2016	10	FSM	ENSMUSG00000027932.15	ENSMUST00000132041.2	2016	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	39.8803766838334	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGGCCCATCTTCGAGA	NA	False	NA	-19	True	AATAAA	-12	NA	90296971	90292547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_90292841_90293556_90293688_90293786_90293885_90294054_90294254_90294370_90294462_90294561_90294757_90294942_90295068_90295634_90295794_90295996_90296229_90296478
transcript_58989.known	chr3	-	4337	30	FSM	ENSMUSG00000027933.12	ENSMUST00000029542.12	4337	30	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_21	22.3924035870797	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGCCTGAGTTGACAT	NA	False	NA	-11	True	AATGAA	-16	NA	90340836	90298702	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_90299413_90299518_90299676_90299834_90299908_90300097_90300199_90300402_90300571_90301052_90301102_90301380_90301495_90301629_90301706_90302444_90302514_90303684_90303839_90307610_90307731_90307901_90307947_90308374_90308479_90308711_90308767_90309149_90309280_90309614_90309735_90310385_90310493_90310812_90310905_90311291_90311372_90311820_90311909_90313480_90313673_90315808_90315907_90317304_90317435_90318507_90318653_90320836_90320904_90322464_90322550_90322799_90322914_90329042_90329127_90331310_90331395_90340110
transcript_58991.known	chr3	-	2226	9	FSM	ENSMUSG00000027933.12	ENSMUST00000198562.2	2226	9	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_4	14.517231140958	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAGGAAACAAAACCAA	NA	False	NA	NA	False	NA	NA	NA	90340929	90315208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_90315907_90317304_90317435_90318507_90318653_90320836_90320904_90322464_90322550_90322799_90322914_90329042_90329127_90331310_90331395_90340110
transcript_59.known	ERCC-00120	+	520	1	FSM	ERCC-00120A	DQ854992	520	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	520	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00120_+_0_500
transcript_5900.nnic	chr1	+	2933	7	NNC	ENSMUSG00000062510.13	novel	4879	6	NA	NA	-10	-1922	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	82.1517904045108	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTAATTGCATTTTTACTG	NA	False	NA	10	True	AATAAA	-14	NA	190795198	190816749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_190795470_190797371_190797451_190802186_190802318_190803374_190803430_190812685_190812754_190814367_190815835_190815887
transcript_59000.nnic	chr3	-	856	4	NNC	ENSMUSG00000027931.13	novel	4066	22	NA	NA	2355	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_3	63.2824356884805	332	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTCTCTTCTTGGGAGA	NA	False	NA	-1	True	ATTAAA	-17	NA	90362428	90357897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_90358490_90358612_90358705_90362124_90362224_90362355
transcript_59005.nic	chr3	-	988	3	ISM	ENSMUSG00000027931.13	ENSMUST00000029540.13	4066	22	10745	0	2355	0	intron_retention	FALSE	canonical	3	97	junction_2	38	376	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTCTCTTCTTGGGAGA	NA	False	NA	-1	True	ATTAAA	-17	NA	90362428	90357897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_-_90358490_90358612_90358705_90362124
transcript_59008.known	chr3	-	1928	4	FSM	ENSMUSG00000001018.16	ENSMUST00000149884.2	1928	4	0	0	0	0	multi-exon	FALSE	canonical	3	599	junction_3	50.1663898109747	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTCTACTGAGGTTATAG	NA	False	NA	NA	False	AATAAA	-12	NA	90398340	90395340	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_90396901_90397460_90397580_90397854_90397902_90398138
transcript_5901.known	chr1	+	4879	6	FSM	ENSMUSG00000062510.13	ENSMUST00000078259.8	4879	6	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_5	16.7164589551735	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAGAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	190795227	190818671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_190795470_190797371_190797451_190802186_190802318_190803374_190803430_190812685_190812754_190814367
transcript_59011.known	chr3	-	1575	4	FSM	ENSMUSG00000001018.16	ENSMUST00000184877.8	1575	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_3	310.762860643861	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAAAAAATTTATTTTAT	NA	False	NA	-29	True	AATAAA	-20	NA	90398331	90395679	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_90396901_90397460_90397580_90397854_90397902_90398143
transcript_59013.known	chr3	-	1505	3	FSM	ENSMUSG00000001018.16	ENSMUST00000185005.2	1505	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	341	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATTTATTTTATTAT	NA	False	NA	-26	True	AATAAA	-23	NA	90398300	90395676	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_90396901_90397460_90397580_90398138
transcript_59015.known	chr3	+	3167	1	FSM	ENSMUSG00000001016.13	ENSMUST00000197644.2	3167	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAATATATATAT	NA	False	NA	NA	False	NA	NA	NA	90383446	90386613	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_90383400_90386600
transcript_59016.known	chr3	+	2027	14	FSM	ENSMUSG00000001016.13	ENSMUST00000001042.10	2027	14	0	0	0	0	multi-exon	FALSE	canonical	3	1252	junction_8	67.3276893371464	2382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGTACAAGCATTTATTTA	NA	False	NA	18	True	AATAAA	-23	NA	90383453	90395686	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083_90390150_90391760_90391878_90392996_90393076_90393491_90393580_90394157_90394220_90394289_90394405_90394533_90394625_90394765
transcript_59017.known	chr3	+	1702	13	FSM	ENSMUSG00000001016.13	ENSMUST00000196769.5	1702	13	0	0	0	0	multi-exon	FALSE	canonical	3	1252	junction_8	69.553137160655	884	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGCTTTTGGTTTTATTTT	NA	False	NA	13	True	ATTAAA	-13	NA	90383432	90395270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083_90390150_90391760_90391878_90392996_90393076_90393491_90393580_90394157_90394405_90394533_90394625_90394765
transcript_59018.known	chr3	+	1373	6	FSM	ENSMUSG00000001016.13	ENSMUST00000198738.5	1373	6	0	0	0	0	multi-exon	FALSE	canonical	3	1316	junction_1	40.3464992285576	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACGAAAACAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	90383453	90389658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670
transcript_5902.known	chr1	+	837	5	FSM	ENSMUSG00000062510.13	ENSMUST00000139340.8	837	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	96.9442494426565	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGGTTTCTGAGGTCAG	NA	False	NA	NA	False	NA	NA	NA	190795220	190809136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_190795470_190797371_190797451_190802186_190802318_190803374_190803430_190808813
transcript_59030.known	chr3	-	3257	5	FSM	ENSMUSG00000001017.16	ENSMUST00000001043.14	3257	5	0	0	0	0	multi-exon	TRUE	canonical	3	892	junction_3	258.017804618208	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGGCTTTCTGTTTATTT	NA	False	NA	-1	True	NA	NA	NA	90416758	90406262	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_90407415_90409422_90409561_90410402_90410590_90413414_90414934_90416497
transcript_59031.known	chr3	-	1842	5	FSM	ENSMUSG00000001017.16	ENSMUST00000076639.11	1842	5	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	581.611769138143	769	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCAGGCTTTCTGTTTAT	NA	False	NA	-3	True	NA	NA	NA	90416769	90406264	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_90407415_90410402_90410587_90413414_90413569_90414851_90414934_90416497
transcript_59032.known	chr3	-	2012	6	FSM	ENSMUSG00000001017.16	ENSMUST00000049937.13	2012	6	0	0	0	0	multi-exon	FALSE	canonical	3	892	junction_3	230.9202459725	1604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTTAACCCAGGCTTTC	NA	False	NA	-10	True	NA	NA	NA	90416805	90406271	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_90407415_90409422_90409561_90410402_90410590_90413414_90413569_90414851_90414934_90416497
transcript_59033.known	chr3	-	1321	5	FSM	ENSMUSG00000001017.16	ENSMUST00000107346.8	1321	5	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	566.644233624591	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTACATCTTTCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	90416781	90406800	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_90407415_90410402_90410590_90413414_90413569_90414851_90414934_90416497
transcript_59034.known	chr3	-	2411	4	FSM	ENSMUSG00000001017.16	ENSMUST00000107342.2	2411	4	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	627.621435792841	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTGGTTGAGTTTGTTT	NA	False	NA	-28	True	NA	NA	NA	90416792	90407001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_90407415_90410402_90410587_90413414_90414934_90416497
transcript_59039.known	chr3	-	577	3	FSM	ENSMUSG00000044080.10	ENSMUST00000107340.2	577	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	187.5	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATCAATGTCTGTACCCT	NA	False	NA	-6	True	AATAAA	-17	NA	90421585	90418343	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_90418672_90419285_90419457_90421507
transcript_59044.known	chr3	+	715	4	FSM	ENSMUSG00000042312.11	ENSMUST00000048138.8	715	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	161.897772958398	6414	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTTATTTATTTATTTA	NA	False	NA	15	True	AATAAA	-20	NA	90421741	90431888	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_90421773_90422064_90422327_90423156_90423350_90431659
transcript_59058.known	chr3	+	1059	4	FSM	ENSMUSG00000042306.12	ENSMUST00000167598.6	1059	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0.816496580927726	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTTGTCTTGACTCTTTA	371	False	NA	15	True	AATAAA	-20	NA	90434176	90436144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_90434207_90434478_90434601_90435020_90435168_90435384
transcript_59059.known	chr3	+	926	3	FSM	ENSMUSG00000074457.11	ENSMUST00000107335.2	926	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.5	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCAACCTCTTAGCCGGG	NA	False	NA	NA	False	NA	NA	NA	90444621	90450321	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_90444725_90449306_90449480_90449671
transcript_5906.known	chr1	+	608	5	FSM	ENSMUSG00000062510.13	ENSMUST00000076952.12	608	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	98.226778426252	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCAGTTCCCTTTCCTGG	NA	False	NA	NA	False	NA	NA	NA	190795208	190807403	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_190795470_190797371_190797451_190802186_190802318_190803374_190803430_190807321
transcript_59060.known	chr3	+	608	3	FSM	ENSMUSG00000074457.11	ENSMUST00000107333.8	608	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTGCTTCCCTGAGCATT	NA	False	NA	NA	False	GGGGCT	-16	NA	90448452	90450055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_90448498_90449300_90449480_90449671
transcript_59061.known	chr3	+	723	3	FSM	ENSMUSG00000074457.11	ENSMUST00000107331.8	723	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTCTGTGTGCTCTCGCAA	NA	False	NA	NA	False	NA	NA	NA	90448455	90450169	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_90448502_90449300_90449480_90449671
transcript_59062.known	chr3	+	1123	3	FSM	ENSMUSG00000074457.11	ENSMUST00000098910.3	1123	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	10.5	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGCTGCTTCCTTTGT	NA	False	NA	11	True	AATAAA	-22	NA	90448467	90450458	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_90448625_90449300_90449480_90449671
transcript_59064.known	chr3	+	712	3	FSM	ENSMUSG00000001021.14	ENSMUST00000001047.8	712	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTACTTTTGTTTTTTTCTG	NA	False	NA	NA	False	AATAAA	-16	NA	90507521	90510009	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_90507576_90509086_90509233_90509497
transcript_59065.known	chr3	+	731	3	FSM	ENSMUSG00000001025.9	ENSMUST00000001051.9	731	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	1	780	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCATGTGTTCTGGCTTCC	5197	False	NA	22	True	AATAAA	-22	NA	90520188	90521721	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_90520534_90521049_90521212_90521497
transcript_59066.known	chr3	+	464	3	FSM	ENSMUSG00000001025.9	ENSMUST00000198128.2	464	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	15	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCATGTGTTCTGGCTTCC	5620	False	NA	22	True	AATAAA	-22	NA	90520611	90521721	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_90520690_90521049_90521212_90521497
transcript_5907.nnic	chr1	+	515	3	NNC	ENSMUSG00000062510.13	novel	608	5	NA	NA	-10	-9098	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	120	65	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTGCTGTGTGGTGTGAC	NA	False	NA	NA	False	NA	NA	NA	190795198	190798305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_190795470_190797371_190797451_190798140
transcript_59070.known	chr3	-	1392	1	FSM	ENSMUSG00000042165.9	ENSMUST00000192538.2	1392	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	914	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACTGTTCCAGCCACTT	NA	False	NA	NA	False	NA	NA	NA	92336730	92335338	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_92335300_92336700
transcript_59073.nnic	chr3	-	1691	3	Genic_Genomic	ENSMUSG00000103628.2	novel	132	1	NA	NA	-196320	277	multi-exon	TRUE	canonical	0	0	junction_1	0	84	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAACCAAACAAACAAAACC	NA	False	NA	NA	False	AATAAA	-28	NA	93204224	93007495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr3_-_93008064_93185354_93186452_93204198
transcript_59076.nnic	chr3	-	1684	2	Genic_Genomic	ENSMUSG00000103628.2	novel	132	1	NA	NA	-178566	277	multi-exon	FALSE	canonical	0	0	junction_1	0	84	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAACCAAACAAACAAAACC	NA	False	NA	NA	False	AATAAA	-28	NA	93186470	93007495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr3_-_93008064_93185354
transcript_5908.known	chr1	+	532	3	FSM	ENSMUSG00000026630.10	ENSMUST00000194833.6	532	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCAGGGAGATTTCGAAGCT	NA	False	NA	NA	False	NA	NA	NA	190830043	190840683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_190830435_190832924_190833030_190840647
transcript_59083.nnic	chr3	+	507	3	Genic_Genomic	ENSMUSG00000103273.2	novel	2544	1	NA	NA	2191	103050	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATTATGTAAATAGTCAC	NA	False	NA	NA	False	NA	NA	NA	93215965	93319368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr3_+_93216271_93318976_93319053_93319242
transcript_59084.known	chr3	+	511	3	FSM	ENSMUSG00000027907.5	ENSMUST00000029515.5	511	3	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_1	9.5	6339	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTGAGAGTCAGTAGATT	NA	False	NA	7	True	AATAAA	-25	NA	93427794	93433594	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_93427861_93431357_93431507_93433298
transcript_59085.known	chr3	+	685	3	FSM	ENSMUSG00000041959.15	ENSMUST00000045756.14	685	3	0	0	0	0	multi-exon	TRUE	canonical	3	427	junction_2	41.5	2806	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGACGTAGAGTGTTTC	NA	False	NA	20	True	AATAAA	-24	NA	93462386	93471950	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_93462519_93468250_93468403_93471549
transcript_59088.known	chr3	+	1781	6	FSM	ENSMUSG00000028145.10	ENSMUST00000049822.10	1781	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	4.47213595499958	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGCTTCTTGTTTTCAC	NA	False	NA	17	True	AATAAA	-27	NA	94217395	94239847	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_94217596_94224696_94224884_94230888_94231049_94231583_94231692_94237068_94237194_94238846
transcript_5909.known	chr1	+	801	3	FSM	ENSMUSG00000026630.10	ENSMUST00000027943.6	801	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	4.5	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTTTCCTTTGTCCATCT	NA	False	NA	NA	False	AATAAA	-12	NA	190830521	190841140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_190830725_190832924_190833030_190840647
transcript_59092.nnic	chr3	+	1587	5	NIC	ENSMUSG00000028145.10	novel	1781	6	NA	NA	7	0	combination_of_known_splicesites	FALSE	canonical	3	4	junction_1	7.81024967590665	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGCTTCTTGTTTTCAC	NA	False	NA	17	True	AATAAA	-27	NA	94217402	94239847	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_+_94217596_94230888_94231049_94231583_94231692_94237068_94237194_94238846
transcript_59094.known	chr3	+	940	2	FSM	ENSMUSG00000028145.10	ENSMUST00000196824.2	940	2	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAAGAAAAAAAAAAAATC	NA	False	NA	NA	False	NA	NA	NA	94217436	94225477	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_94217596_94224696
transcript_59095.known	chr3	+	1251	6	FSM	ENSMUSG00000028148.12	ENSMUST00000029794.11	1251	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.01980390271856	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTAGTTGATTCTTTTAG	NA	False	NA	NA	False	TTTAAA	-5	NA	94249405	94254659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_94249689_94250561_94250764_94251715_94251855_94253455_94253567_94253854_94253980_94254268
transcript_59097.known	chr3	+	2136	11	FSM	ENSMUSG00000028150.15	ENSMUST00000029795.10	2136	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	1.32664991614216	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTCTTCTTCCTAGT	NA	False	NA	NA	False	AATATA	-17	NA	94280100	94305147	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_94280239_94282341_94282372_94294427_94294514_94294766_94294909_94296057_94296565_94296781_94296904_94298380_94298514_94298686_94298795_94298951_94299063_94300337_94300448_94304498
transcript_59098.known	chr3	+	5692	14	FSM	ENSMUSG00000041912.13	ENSMUST00000166032.8	5692	14	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	17.2732991609977	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGGGAGCTTTTCTCTG	NA	False	NA	NA	False	AATAAA	-14	NA	94320579	94341975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_94320670_94330108_94330259_94331001_94331109_94331807_94331998_94332869_94333010_94333097_94333420_94335161_94335323_94335452_94335626_94335966_94336032_94336346_94336499_94336663_94336766_94337357_94337455_94337866_94337959_94338124
transcript_59103.known	chr3	+	1612	7	FSM	ENSMUSG00000028140.14	ENSMUST00000029786.14	1612	7	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_4	26.1002341411379	1042	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGAAAAAGAACTTC	8490	False	NA	NA	False	NA	NA	NA	94350631	94356015	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_94350802_94350965_94351123_94351893_94352019_94352207_94352259_94353942_94354045_94354566_94354651_94355092
transcript_59104.known	chr3	+	1657	7	FSM	ENSMUSG00000028140.14	ENSMUST00000196143.2	1657	7	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_6	82.6068331852086	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCTGGCTCCATTTTCTC	8502	False	NA	NA	False	NA	NA	NA	94350643	94358437	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_94350802_94350965_94351123_94351893_94352019_94352207_94352259_94353942_94354045_94354566_94354651_94357457
transcript_59106.known	chr3	+	1050	6	FSM	ENSMUSG00000041912.13	ENSMUST00000196386.5	1050	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	15.7175061635108	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATAGAAATATGTTGACAAA	NA	False	NA	NA	False	AATAAA	-30	NA	94320624	94333615	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_94320670_94330108_94330259_94331001_94331109_94331807_94331898_94332869_94333010_94333097
transcript_59109.known	chr3	+	1231	6	FSM	ENSMUSG00000041912.13	ENSMUST00000200486.5	1231	6	0	0	0	0	multi-exon	FALSE	canonical	2	27	junction_5	8.74070935336486	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTATGTGTATGTATGT	NA	False	NA	NA	False	ATTAAA	-26	NA	94320623	94333695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_94320670_94330108_94330259_94331001_94331109_94331807_94331998_94332869_94333010_94333097
transcript_5911.known	chr1	-	1984	4	FSM	ENSMUSG00000026628.14	ENSMUST00000027941.14	1984	4	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_2	6.37704215656966	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTAGTGTGGCACTGGTTT	NA	False	NA	0	True	AATAAA	-23	NA	190915537	190902492	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_190903877_190904571_190904680_190909427_190909672_190915289
transcript_59114.nnic	chr3	+	1601	6	NIC	ENSMUSG00000028140.14	novel	1612	7	NA	NA	-53	13	combination_of_known_splicesites	FALSE	canonical	3	10	junction_5	87.5337649138891	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTTCTGTGTTATTTCTT	8430	False	NA	NA	False	NA	NA	NA	94350571	94356028	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_+_94350802_94350965_94351123_94351893_94352019_94352207_94352259_94353942_94354045_94355092
transcript_59118.known	chr3	+	716	5	FSM	ENSMUSG00000028140.14	ENSMUST00000199009.2	716	5	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_4	29.7195222034272	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGGGAGTTATTCTTGGT	8483	False	NA	NA	False	TATAAA	-18	NA	94350624	94354148	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_94350802_94350965_94351123_94351893_94352019_94352207_94352259_94353942
transcript_59123.known	chr3	-	6261	12	FSM	ENSMUSG00000028136.16	ENSMUST00000029783.16	6261	12	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	37.6139590757922	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGGTTTCCTAGACTA	NA	False	NA	-2	True	AATAAA	-21	NA	94490023	94404850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_94409373_94409476_94409537_94410162_94410292_94410765_94410916_94418348_94418439_94426354_94426519_94427494_94427574_94431492_94431598_94436218_94436284_94438503_94438697_94469075_94469308_94489551
transcript_59124.known	chr3	-	3531	12	FSM	ENSMUSG00000028136.16	ENSMUST00000107283.8	3531	12	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	30.5951975921464	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAGTACAAAATATAGTA	NA	False	NA	NA	False	NA	NA	NA	94489856	94406619	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_94408579_94409476_94409537_94410162_94410292_94410765_94410916_94418348_94418439_94426354_94426519_94427494_94427574_94431492_94431598_94436218_94436284_94438503_94438697_94469075_94469308_94489551
transcript_59129.known	chr3	-	377	1	FSM	ENSMUSG00000062896.4	ENSMUST00000119898.2	377	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	570	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTCATGTCAAATAAAGTTG	NA	False	NA	NA	False	NA	NA	NA	94512091	94511714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_94511700_94512100
transcript_5913.known	chr1	+	716	2	FSM	ENSMUSG00000073478.7	ENSMUST00000139056.3	716	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATGGATGTGCAAACAT	NA	False	NA	NA	False	AATAAA	-25	NA	190956650	190958032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_190956740_190957405
transcript_59130.known	chr3	-	2631	13	FSM	ENSMUSG00000005968.15	ENSMUST00000006123.11	2631	13	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_11	22.9474036294596	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCCCCGTGGGTCTTTTA	6441	False	NA	-5	True	AATAAA	-16	NA	94566178	94520063	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_94521499_94522030_94522132_94523076_94523161_94523928_94524035_94529357_94529453_94529994_94530124_94535503_94535618_94539903_94539970_94541764_94541855_94542715_94542803_94546231_94546334_94546701_94546777_94566031
transcript_59131.nnic	chr3	-	2608	13	Fusion	ENSMUSG00000005968.15_ENSMUSG00000081355.2	novel	2555	12	NA	NA	-44	0	multi-exon	FALSE	non_canonical	2	2	junction_11	35.2950854306312	66	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGCCCCGTGGGTCTTT	NA	False	NA	-7	True	AATAAA	-14	NA	94665467	94520065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr3_-_94521499_94522030_94522132_94523076_94523161_94523928_94524035_94529357_94529453_94529994_94530124_94535503_94535618_94539903_94539970_94629191_94629282_94630124_94630212_94640266_94640369_94640735_94640811_94665341
transcript_59135.known	chr3	-	2555	12	FSM	ENSMUSG00000005968.15	ENSMUST00000196733.5	2555	12	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_9	16.8728840118112	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGCCCCGTGGGTCTTT	6440	False	NA	-7	True	AATAAA	-14	NA	94566179	94520065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_94521499_94522030_94522132_94523076_94523161_94523928_94524035_94529357_94529453_94529994_94530124_94535503_94535618_94539903_94539970_94541764_94541855_94542715_94542803_94546231_94546334_94566031
transcript_59136.nnic	chr3	-	2561	12	Fusion	ENSMUSG00000005968.15_ENSMUSG00000081355.2	novel	2555	12	NA	NA	-72	0	multi-exon	FALSE	non_canonical	3	14	junction_10	28.4119634911332	86	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGCCCCGTGGGTCTTT	NA	False	NA	-7	True	AATAAA	-14	NA	94665495	94520065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr3_-_94521499_94522030_94522132_94523076_94523161_94523928_94524035_94529357_94529453_94529994_94530124_94535503_94535618_94539903_94539970_94629191_94629282_94630124_94630212_94640266_94640369_94665341
transcript_59140.known	chr3	+	1058	2	FSM	ENSMUSG00000085250.2	ENSMUST00000141485.2	1058	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGTCTTGACTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	94566267	94567422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_94566324_94566420
transcript_59141.nnic	chr3	-	754	7	NNC	ENSMUSG00000081355.2	novel	502	6	NA	NA	-34	2302	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	27.1318795679343	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTGCCCTTTCTGTCTC	NA	False	NA	NA	False	NA	NA	NA	94665457	94625027	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_94625246_94627329_94627396_94629191_94629282_94630124_94630212_94640266_94640369_94640735_94640811_94665341
transcript_59146.known	chr3	-	1183	7	FSM	ENSMUSG00000005779.13	ENSMUST00000005923.7	1183	7	0	0	0	0	multi-exon	FALSE	canonical	3	1538	junction_1	134.402380931292	8032	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTTGTCTTTCTCAATT	NA	False	NA	NA	False	NA	NA	NA	94794272	94791403	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_94791752_94791981_94792071_94792227_94792345_94792970_94793053_94793385_94793533_94793751_94793959_94794079
transcript_59147.known	chr3	-	292	2	FSM	ENSMUSG00000005779.13	ENSMUST00000134133.2	292	2	0	0	0	0	multi-exon	FALSE	canonical	3	1538	junction_1	0	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTTGGATTTTGTGTTT	NA	False	NA	-3	True	AATAAA	-21	NA	94792154	94791632	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_94791752_94791981
transcript_59148.known	chr3	-	666	5	FSM	ENSMUSG00000005779.13	ENSMUST00000133412.8	666	5	0	0	0	0	multi-exon	FALSE	canonical	3	1712	junction_2	94.1604348970416	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACAAATTCTGGAGCCAGG	NA	False	NA	NA	False	NA	NA	NA	94794173	94792208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_94792345_94792970_94793053_94793385_94793533_94793751_94793959_94794079
transcript_59149.known	chr3	+	1703	12	FSM	ENSMUSG00000068874.14	ENSMUST00000140757.8	1703	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	10.0527534158393	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTGAAACTTCTCTCAGA	2654	False	NA	NA	False	AATAAA	-1	NA	94840366	94852056	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_94840474_94844007_94844065_94844205_94844319_94844518_94844709_94845265_94845387_94846956_94847140_94847358_94847538_94849774_94849854_94849935_94850058_94851149_94851243_94851385_94851505_94851716
transcript_5915.known	chr1	-	742	4	FSM	ENSMUSG00000037499.10	ENSMUST00000046770.10	742	4	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	10.5303793326209	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTGTGTATGGTTCTTG	NA	False	NA	0	True	AATAAA	-19	NA	191050391	191038985	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_191039287_191042115_191042220_191043656_191043718_191050115
transcript_59153.known	chr3	+	4333	10	FSM	ENSMUSG00000005774.13	ENSMUST00000137088.8	4333	10	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_7	4.21637021355784	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGCTCCTGAGTCGTTT	NA	False	NA	NA	False	NA	NA	NA	94861418	94868872	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_94861563_94862325_94862458_94862662_94862697_94863056_94863140_94863582_94863703_94863797_94863918_94864031_94864114_94864407_94864610_94865092_94865197_94865560
transcript_59156.known	chr3	+	3692	11	FSM	ENSMUSG00000038861.15	ENSMUST00000072287.12	3692	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_8	4.61410879802373	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGCAGTTTTAATGGTCT	NA	False	NA	NA	False	ATTAAA	-3	NA	94882041	94914154	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_94882397_94891293_94892231_94900276_94900505_94901471_94901700_94903145_94903256_94903890_94903996_94904162_94904287_94906158_94906425_94911550_94911684_94911944_94912066_94913069
transcript_59168.known	chr3	-	1332	10	FSM	ENSMUSG00000005625.16	ENSMUST00000107237.8	1332	10	0	0	0	0	multi-exon	FALSE	canonical	3	1001	junction_3	333.422654699207	8208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAAATAGTGATAGCTTTG	NA	False	NA	-10	True	AATAAA	-25	NA	94949925	94940004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_94940296_94940792_94940858_94940943_94941076_94941228_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915_94944057_94949818
transcript_59169.known	chr3	-	1276	10	FSM	ENSMUSG00000005625.16	ENSMUST00000071664.12	1276	10	0	0	0	0	multi-exon	FALSE	canonical	3	876	junction_3	370.873576676127	5285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTTCAAATAGTGATAGCT	NA	False	NA	-13	True	AATAAA	-22	NA	94949863	94940007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_94940296_94940792_94940858_94940943_94941076_94941219_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915_94944057_94949818
transcript_5917.known	chr1	+	2246	8	FSM	ENSMUSG00000026627.8	ENSMUST00000027940.6	2246	8	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_7	21.6248156769306	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCCTGCTACCTTTGTCT	NA	False	NA	6	True	AATAAA	-15	NA	191058108	191083111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_191058274_191060379_191060477_191070978_191071189_191072923_191073076_191077173_191077317_191078956_191079102_191080564_191080673_191081885
transcript_59170.known	chr3	-	1756	9	FSM	ENSMUSG00000005625.16	ENSMUST00000117355.2	1756	9	0	0	0	0	multi-exon	FALSE	canonical	3	876	junction_2	388.88942435479	2112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTTTTGCTTCAAATAG	NA	False	NA	-21	True	AATAAA	-14	NA	94949854	94940015	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_94940858_94940943_94941076_94941219_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915_94944057_94949818
transcript_59171.known	chr3	-	3663	15	FSM	ENSMUSG00000028126.17	ENSMUST00000107233.9	3663	15	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_14	7.6080650011172	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTTAAATGCTTTTATT	1198	False	NA	-1	True	AATAAA	-44	NA	95014241	94965853	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_94967397_94967794_94967841_94970965_94971096_94971641_94971786_94972731_94972817_94973122_94973172_94974692_94974777_94975371_94975578_94978022_94978323_94979200_94979354_94979713_94979832_94981303_94981435_94985412_94985494_94990101_94990140_95013686
transcript_59172.known	chr3	-	724	2	FSM	ENSMUSG00000028126.17	ENSMUST00000107229.2	724	2	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGCTTGTAGAGGAGTTG	1305	False	NA	NA	False	AATAAA	-33	NA	95014134	95004353	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95004630_95013686
transcript_59173.nnic	chr3	-	1215	2	NNC	ENSMUSG00000028126.17	novel	724	2	NA	NA	-323	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	0	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGCTTGTAGAGGAGTTG	875	False	NA	NA	False	AATAAA	-33	NA	95014564	95004353	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_95004691_95013686
transcript_59174.known	chr3	-	85	1	FSM	ENSMUSG00000064952.3	ENSMUST00000083018.3	85	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CCGAGAAAAAAAAACAAAAA	5392	False	NA	NA	False	AAAACA	-30	NA	94998020	94997935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_94997900_94998000
transcript_59176.known	chr3	+	956	6	FSM	ENSMUSG00000008958.15	ENSMUST00000125548.8	956	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	357.37017223042	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCACTACCTGGCTCTGG	2611	False	NA	NA	False	NA	NA	NA	95018383	95030032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_95018407_95025535_95025689_95025959_95026075_95026441_95026619_95028572_95028718_95029689
transcript_59178.known	chr3	+	1456	6	FSM	ENSMUSG00000008958.15	ENSMUST00000009102.9	1456	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	358.969413738831	1601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAACAAATAA	2560	False	NA	NA	False	NA	NA	NA	95018332	95030362	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_95018526_95025535_95025689_95025959_95026075_95026441_95026619_95028572_95028718_95029689
transcript_59179.known	chr3	+	1242	10	FSM	ENSMUSG00000005628.13	ENSMUST00000005769.13	1242	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.05409255338946	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTCTCCTTGCCTGGAT	NA	False	NA	NA	False	AATAAA	-19	NA	95031824	95036520	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_95031890_95032825_95032989_95033130_95033288_95033721_95033839_95034650_95034741_95034899_95035031_95035114_95035223_95035579_95035724_95035910_95036056_95036398
transcript_59187.known	chr3	-	1054	7	FSM	ENSMUSG00000092607.10	ENSMUST00000172572.9	1054	7	0	0	0	0	multi-exon	FALSE	canonical	3	365	junction_2	27.675199487387	819	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTCGCTGCCCTTCATGG	1238	False	NA	NA	False	NA	NA	NA	95041322	95036846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95037195_95037474_95037670_95040135_95040225_95040327_95040423_95040510_95040600_95040868_95040940_95041155
transcript_59188.known	chr3	-	666	6	FSM	ENSMUSG00000092607.10	ENSMUST00000173462.3	666	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	166.639011038832	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACACTGATCCTGGAGTC	1238	False	NA	-33	True	AATAAA	-18	NA	95041322	95037039	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95037195_95040135_95040225_95040327_95040423_95040510_95040600_95040868_95040940_95041155
transcript_59189.known	chr3	-	366	2	FSM	ENSMUSG00000092607.10	ENSMUST00000199730.2	366	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATCCTGGAGTCCGGTTCC	4961	False	NA	-26	True	AATAAA	-25	NA	95037599	95037032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95037274_95037474
transcript_59190.known	chr3	+	2394	3	FSM	ENSMUSG00000053769.6	ENSMUST00000066386.6	2394	3	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_2	5.5	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGCTTTAGTGGTTTTA	8611	False	NA	17	True	ATTAAA	-13	NA	95041398	95046829	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_95042308_95044935_95045298_95045706
transcript_59191.known	chr3	-	1122	2	FSM	ENSMUSG00000013707.4	ENSMUST00000013851.4	1122	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGGGCTCACGGTTTAAT	NA	False	NA	NA	False	AATAAA	-15	NA	95049671	95046831	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95047908_95049625
transcript_59193.known	chr3	+	347	3	FSM	ENSMUSG00000038777.20	ENSMUST00000130814.8	347	3	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_1	7	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTGCTGTTGCTGTCAT	NA	False	NA	NA	False	NA	NA	NA	95067804	95071738	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_95068014_95069925_95069975_95071649
transcript_59197.known	chr3	-	1539	6	FSM	ENSMUSG00000038766.17	ENSMUST00000107204.8	1539	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	8.88594395660922	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGGAAACATGCGCTTA	8938	False	NA	NA	False	AATAAA	-26	NA	95125065	95110323	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95111237_95111951_95112120_95113773_95113914_95116150_95116248_95123524_95123580_95124899
transcript_59209.known	chr3	+	956	4	FSM	ENSMUSG00000097167.2	ENSMUST00000181819.2	956	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	5.24933858267454	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGATTTGAGTTATTGTTGA	246	False	NA	NA	False	NA	NA	NA	95124767	95133969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_95125370_95126749_95126861_95129089_95129197_95133833
transcript_59216.known	chr3	-	1923	2	FSM	ENSMUSG00000053192.10	ENSMUST00000065482.6	1923	2	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	0	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGGGCTTAGTTTTTTC	6380	False	NA	0	True	AATAAA	-16	NA	95135988	95126445	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95127775_95135394
transcript_59218.known	chr3	+	2805	5	FSM	ENSMUSG00000046722.15	ENSMUST00000053872.12	2805	5	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_1	33.5885024971343	629	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACGGTTTCAGAGTAATC	1874	False	NA	21	True	AATAAA	-11	NA	95136042	95143720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_95136177_95139095_95139404_95139859_95139971_95140798_95140891_95141560
transcript_59219.known	chr3	-	1810	10	FSM	ENSMUSG00000028115.17	ENSMUST00000107195.9	1810	10	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_9	2.53859103528797	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGCCTAGGGACCAAC	NA	False	NA	NA	False	AATAAA	-19	NA	95158504	95148581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95149173_95150042_95150142_95150308_95150396_95151452_95151585_95152295_95152399_95152960_95153144_95155886_95156112_95157116_95157182_95157477_95157574_95158275
transcript_59222.known	chr3	-	1289	3	FSM	ENSMUSG00000068860.6	ENSMUST00000107197.2	1289	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	7.5	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTGGTCTCATTTTTCT	NA	False	NA	-1	True	AATATA	-21	NA	95148909	95144417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95144541_95147260_95147423_95147905
transcript_59223.known	chr3	-	1959	2	FSM	ENSMUSG00000068860.6	ENSMUST00000090815.6	1959	2	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	0	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCCTTTTTTCCAGTAC	NA	False	NA	NA	False	AATAAA	-16	NA	95148909	95144230	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95144541_95147260
transcript_59224.known	chr3	-	4573	22	FSM	ENSMUSG00000015697.15	ENSMUST00000107171.10	4573	22	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_11	47.7030211966969	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGGTCTGAAATGGTC	1688	False	NA	-4	True	ATTAAA	-15	NA	95264467	95230835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95231502_95231615_95231705_95231940_95232153_95233028_95233195_95233453_95233584_95233696_95233726_95234518_95235148_95235858_95236029_95244459_95244577_95245656_95246344_95247217_95247374_95247472_95247624_95248644_95248775_95248966_95249158_95252836_95252911_95253925_95254128_95254306_95254433_95255306_95255407_95257149_95257185_95261852_95262005_95263244_95263514_95264375
transcript_59225.known	chr3	-	4622	22	FSM	ENSMUSG00000015697.15	ENSMUST00000107170.3	4622	22	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_11	31.3428122874475	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGGTCTGAAATGGTC	1642	False	NA	-4	True	ATTAAA	-15	NA	95264513	95230835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95231502_95231615_95231705_95231940_95232153_95233028_95233195_95233453_95233584_95233696_95233726_95234518_95235148_95235858_95236029_95244459_95244577_95245656_95246344_95247217_95247377_95247472_95247624_95248644_95248775_95248966_95249158_95252836_95252911_95253925_95254128_95254306_95254433_95255306_95255407_95257149_95257185_95261852_95262005_95263244_95263514_95264375
transcript_59230.known	chr3	+	2827	10	FSM	ENSMUSG00000038712.17	ENSMUST00000107187.9	2827	10	0	0	0	0	multi-exon	TRUE	canonical	3	130	junction_1	26.9118359384908	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCGTTCCTACCTTGGAG	NA	False	NA	15	True	AATAAA	-16	NA	95190254	95203477	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_95190937_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200935_95201079_95202105_95202298_95202583_95202737_95202961
transcript_59231.known	chr3	+	2800	10	FSM	ENSMUSG00000038712.17	ENSMUST00000039537.14	2800	10	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_8	52.7870167352017	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCGTTCCTACCTTGGAG	NA	False	NA	15	True	AATAAA	-16	NA	95190254	95203477	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_95190937_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200935_95201079_95202105_95202298_95202610_95202737_95202961
transcript_59239.known	chr3	-	3140	8	FSM	ENSMUSG00000015711.9	ENSMUST00000015855.8	3140	8	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_5	23.7538396466589	189	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTTGTTTCTTTTTAAAA	4350	False	NA	NA	False	ATTAAA	-19	NA	95189387	95160984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95162739_95165337_95165497_95166550_95166646_95169521_95169681_95170902_95171088_95172728_95172932_95175541_95175635_95188895
transcript_59247.known	chr3	-	555	2	FSM	ENSMUSG00000093424.4	ENSMUST00000176569.3	555	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTGTACATTGTTG	9735	False	NA	NA	False	NA	NA	NA	95222438	95218688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95218919_95222113
transcript_59248.known	chr3	+	2216	11	FSM	ENSMUSG00000015714.12	ENSMUST00000015858.12	2216	11	0	0	0	0	multi-exon	FALSE	canonical	3	406	junction_10	31.9782738746168	956	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGGGTTAGTTTTTTTCT	4318	False	NA	45	True	AATAAA	-31	NA	95222394	95230910	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_95222657_95227372_95227547_95227952_95228071_95228252_95228372_95228500_95228559_95228646_95228698_95228885_95228979_95229141_95229271_95229437_95229545_95229630_95229785_95229959
transcript_5925.nnic	chr1	+	1202	5	NNC	ENSMUSG00000026627.8	novel	2246	8	NA	NA	-2	-9269	at_least_one_novel_splicesite	TRUE	canonical	2	6	junction_4	52.8890347803777	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGATGTCCCTTCACAGC	NA	False	NA	NA	False	NA	NA	NA	191058106	191073842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_191058274_191060379_191060477_191070978_191071189_191072923_191073076_191073266
transcript_59255.nnic	chr3	+	1015	4	NNC	ENSMUSG00000097532.3	novel	412	2	NA	NA	-551	-90	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_3	52.0917993119412	55	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTTTTTGTTTGTTTT	NA	False	NA	-82	True	AGTAAA	-16	NA	95334430	95338308	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_95334711_95335864_95336134_95337597_95337750_95337994
transcript_59256.nnic	chr3	+	1107	4	NNC	ENSMUSG00000097532.3	novel	412	2	NA	NA	-551	2	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_3	52.0917993119412	180	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCAGTGTCTTCCTCTAT	NA	False	NA	10	True	AGTAAA	-24	NA	95334430	95338400	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_95334711_95335864_95336134_95337597_95337750_95337994
transcript_59271.known	chr3	+	2699	22	FSM	ENSMUSG00000015522.19	ENSMUST00000102749.11	2699	22	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_11	68.4937059524599	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTTTTAGGATCCTCTGA	NA	False	NA	-2	True	ATTAAA	-11	NA	95341698	95402878	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_95341873_95355682_95355795_95359895_95359941_95367687_95367733_95374103_95374149_95377487_95377702_95381849_95382064_95383390_95383494_95387505_95387572_95388064_95388151_95391082_95391160_95392169_95392305_95394559_95394635_95395665_95395818_95396902_95397014_95397191_95397268_95397565_95397690_95397863_95397967_95398333_95398482_95401008_95401172_95401757_95401925_95402614
transcript_59274.known	chr3	+	4325	21	FSM	ENSMUSG00000015522.19	ENSMUST00000090804.12	4325	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	84.9941174435031	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTGTGTTGTGTGATA	NA	False	NA	NA	False	TATAAA	-1	NA	95341700	95404551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_95341873_95355682_95355795_95359895_95359941_95367687_95367733_95377487_95377702_95381849_95382064_95383390_95383494_95387505_95387572_95388064_95388151_95391082_95391160_95392169_95392305_95394559_95394635_95395665_95395818_95396902_95397014_95397191_95397268_95397565_95397690_95397863_95397967_95398333_95398482_95401008_95401172_95401757_95401925_95402614
transcript_59276.nic	chr3	+	978	7	ISM	ENSMUSG00000015522.19	ENSMUST00000147765.8	2557	19	-30	16771	-30	-5381	5prime_fragment	TRUE	canonical	3	208	junction_4	34.1792659696229	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGATATTTAAGCCT	NA	False	NA	NA	False	NA	NA	NA	95341668	95382162	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_95341873_95355682_95355795_95359895_95359941_95367687_95367733_95374103_95374149_95377487_95377702_95381849
transcript_59278.known	chr3	+	783	4	FSM	ENSMUSG00000015522.19	ENSMUST00000107160.8	783	4	0	0	0	0	multi-exon	FALSE	canonical	3	293	junction_1	3.2659863237109	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACTGGTTTTACTTTTAG	NA	False	NA	NA	False	ATTAAA	-21	NA	95341738	95368179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_95341873_95355682_95355795_95359895_95359941_95367687
transcript_5928.known	chr1	-	4212	15	FSM	ENSMUSG00000037474.14	ENSMUST00000027933.11	4212	15	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_7	26.7651349516417	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGTGGAAGAGTGTGTT	NA	False	NA	-6	True	NA	NA	NA	191307656	191269476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_191271454_191272815_191273649_191278602_191278736_191280407_191280498_191285099_191285213_191288552_191288658_191288895_191289000_191290172_191290247_191293536_191293650_191295222_191295289_191300402_191300524_191300606_191300669_191301778_191301878_191302690_191302817_191307460
transcript_59280.known	chr3	+	1512	8	FSM	ENSMUSG00000028111.5	ENSMUST00000015664.5	1512	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.451753951452626	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAGAACACTGCGTCCA	NA	False	NA	NA	False	AATAAA	-19	NA	95406566	95416673	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_95406648_95408144_95408266_95408657_95408781_95408861_95409018_95409892_95410112_95413872_95414039_95414223_95414330_95416133
transcript_59302.known	chr3	+	1385	15	FSM	ENSMUSG00000028109.15	ENSMUST00000029754.13	1385	15	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_6	50.4359059821958	641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATATTGTGTTTACCTGA	NA	False	NA	NA	False	AATAAA	-11	NA	95466988	95494903	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_95467044_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95494691
transcript_59303.known	chr3	+	1444	16	FSM	ENSMUSG00000028109.15	ENSMUST00000107154.4	1444	16	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_15	107.711260114974	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTGTTTACCTGAGATA	NA	False	NA	NA	False	AATAAA	-15	NA	95466988	95494907	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_95467044_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95492845_95492901_95494691
transcript_59304.known	chr3	+	1437	15	FSM	ENSMUSG00000028109.15	ENSMUST00000171191.6	1437	15	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_14	86.2158243441826	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTCTCTAATTCATTTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	95466988	95493109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_95467044_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95492845
transcript_59305.known	chr3	+	2836	5	FSM	ENSMUSG00000046519.16	ENSMUST00000177390.8	2836	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_3	6.87386354243376	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTTCTCTCTGTACAT	NA	False	NA	4	True	AATAAA	-15	NA	95496244	95526553	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_95496446_95499027_95499217_95515216_95515349_95516982_95517098_95524354
transcript_59314.nnic	chr3	-	550	2	Antisense	novelGene_ENSMUSG00000060438.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	747	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCTTTCATGTGATTGT	9078	False	NA	NA	False	AAAAAG	-5	NA	95530137	95529545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr3_-_95529966_95530007
transcript_59320.nnic	chr3	-	508	2	Antisense	novelGene_ENSMUSG00000060438.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	946	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTCGTGAGCTTTCATGT	9081	False	NA	NA	False	NA	NA	NA	95530134	95529551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr3_-_95529792_95529866
transcript_59324.known	chr3	+	495	1	FSM	ENSMUSG00000060438.6	ENSMUST00000074353.6	495	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5715	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGTTGGAGTTTATGTTG	106	False	NA	-23	True	NA	NA	NA	95529588	95530083	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_95529600_95530100
transcript_59325.known	chr3	+	1130	4	FSM	ENSMUSG00000038619.13	ENSMUST00000058230.13	1130	4	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_3	204.491781959298	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAACCAAAACTAGACCT	400	False	NA	10	True	AATAAA	-21	NA	95532321	95539413	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_95532488_95534059_95534186_95535851_95536019_95538742
transcript_59326.known	chr3	+	3845	3	FSM	ENSMUSG00000038619.13	ENSMUST00000037983.6	3845	3	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_2	58	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAACCAAAACTAGACCT	409	False	NA	10	True	AATAAA	-21	NA	95532330	95539413	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_95532488_95534059_95534186_95535851
transcript_59327.known	chr3	+	3418	3	FSM	ENSMUSG00000038612.17	ENSMUST00000037947.15	3418	3	0	0	0	0	multi-exon	FALSE	canonical	3	754	junction_2	15.5	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTAAGGTGTGGTATGGG	6417	False	NA	14	True	AATAAA	-14	NA	95566098	95570487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_95566799_95567071_95567320_95568017
transcript_59329.nic	chr3	+	746	2	ISM	ENSMUSG00000038612.17	ENSMUST00000178686.2	858	4	715	-192	715	192	3prime_fragment	FALSE	canonical	3	754	junction_1	0	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCCCTGGAAGAGTCACT	7201	False	NA	34	True	AATAAA	-16	NA	95566882	95568326	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_95567320_95568017
transcript_5933.known	chr1	-	4300	11	FSM	ENSMUSG00000037474.14	ENSMUST00000193977.6	4300	11	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_7	143.039330255703	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	191307625	191281940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_191285213_191288552_191288658_191288895_191289000_191290172_191290247_191293536_191293650_191295222_191295289_191300402_191300517_191300606_191300669_191301778_191301878_191302690_191302817_191307460
transcript_59330.nic	chr3	+	1616	2	ISM	ENSMUSG00000038612.17	ENSMUST00000178686.2	858	4	771	-1118	771	1118	3prime_fragment	FALSE	canonical	3	754	junction_1	0	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTGCCAAGCTTTGTTTT	7257	False	NA	36	True	AATAAA	-27	NA	95566938	95569252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_95567320_95568017
transcript_59331.known	chr3	-	4036	18	FSM	ENSMUSG00000015850.12	ENSMUST00000117782.8	4036	18	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_17	6.21918006589627	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTCTTCGTTATGTTCA	NA	False	NA	NA	False	ATTAAA	-18	NA	95595228	95583510	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95584280_95584420_95584566_95584837_95585018_95585117_95585316_95586897_95587075_95587300_95587506_95587754_95587885_95588046_95588233_95588333_95588446_95588569_95588743_95588961_95589167_95589519_95589657_95590617_95590721_95590942_95591550_95591670_95592009_95592268_95592327_95592765_95592982_95595131
transcript_59332.known	chr3	-	1895	11	FSM	ENSMUSG00000028108.17	ENSMUST00000029753.14	1895	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	2.90688837074973	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTCGTTGTCTTTAGTGC	6907	False	NA	NA	False	AATAAA	-18	NA	95646879	95641459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95641784_95642134_95642223_95642510_95642732_95643158_95643534_95643783_95644104_95644324_95644367_95644944_95645026_95645119_95645201_95645323_95645429_95645550_95645614_95646684
transcript_59337.known	chr3	-	2400	18	FSM	ENSMUSG00000028107.15	ENSMUST00000029752.15	2400	18	0	0	0	0	multi-exon	FALSE	canonical	1	178	junction_5	104.738626737206	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTGTGCCTTCATCTGA	NA	False	NA	-19	True	AATAAA	-16	NA	95662183	95647287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658178_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
transcript_59338.known	chr3	-	2157	16	FSM	ENSMUSG00000028107.15	ENSMUST00000163530.8	2157	16	0	0	0	0	multi-exon	FALSE	canonical	1	51	junction_13	151.691997884602	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTGTGCCTTCATCTGA	NA	False	NA	-19	True	AATAAA	-16	NA	95662183	95647287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95660318_95660443_95661630_95661828_95662069
transcript_59339.known	chr3	-	2313	17	FSM	ENSMUSG00000028107.15	ENSMUST00000074339.13	2313	17	0	0	0	0	multi-exon	TRUE	canonical	1	55	junction_5	130.985194177625	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTGTGCCTTCATCTGA	NA	False	NA	-19	True	AATAAA	-16	NA	95662174	95647287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658178_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
transcript_5934.nnic	chr1	-	1268	11	NNC	ENSMUSG00000037474.14	novel	1787	7	NA	NA	-18	-4454	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	149.69502329737	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATAATAATAATAATTTTC	NA	False	NA	NA	False	NA	NA	NA	191307674	191286394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_191286579_191288552_191288658_191288895_191289000_191290172_191290247_191293536_191293650_191295222_191295289_191300402_191300524_191300606_191300669_191301778_191301878_191302690_191302817_191307460
transcript_59341.known	chr3	-	3298	9	FSM	ENSMUSG00000028106.14	ENSMUST00000197449.2	3298	9	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_5	23.6851087183488	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGAAAGTGTCATGAATTG	10010	False	NA	-4	True	ATTAAA	-15	NA	95726090	95679566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95681685_95683826_95684110_95687726_95687903_95691525_95691653_95692365_95692419_95693631_95693710_95694595_95694697_95697411_95697542_95725858
transcript_59343.nic	chr3	-	932	4	ISM	ENSMUSG00000028106.14	ENSMUST00000198741.2	1052	6	-116	2162	-116	-2162	5prime_fragment	FALSE	canonical	3	59	junction_1	26.2466929133727	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAACTACTATTAAAGG	9896	False	NA	NA	False	NA	NA	NA	95726291	95693441	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_-_95693710_95694595_95694697_95697411_95697542_95725858
transcript_59345.known	chr3	-	2933	16	FSM	ENSMUSG00000015748.14	ENSMUST00000015892.14	2933	16	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_5	22.8428447343048	1572	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAGAGGCAGGTGGATTT	NA	False	NA	NA	False	NA	NA	NA	95763197	95737435	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95738278_95739872_95739935_95741064_95741149_95741395_95741515_95742665_95742780_95742955_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752544_95754686_95754908_95755076_95755161_95756226_95756374_95758874_95759006_95760755_95760950_95763060
transcript_59362.known	chr3	-	2732	16	FSM	ENSMUSG00000015748.14	ENSMUST00000161476.8	2732	16	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_15	112.760197863529	961	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTAGTATGATATTTTT	NA	False	NA	-38	True	ATTAAA	-12	NA	95763065	95737933	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95738278_95739872_95739935_95741064_95741149_95741395_95741515_95742665_95742780_95742955_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752544_95754686_95754908_95755076_95755161_95756226_95756374_95758874_95759006_95760755_95760950_95762631
transcript_59363.known	chr3	-	592	2	FSM	ENSMUSG00000015748.14	ENSMUST00000163059.2	592	2	0	0	0	0	multi-exon	FALSE	canonical	3	427	junction_1	0	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTAGTATGATATTTTT	NA	False	NA	-38	True	ATTAAA	-12	NA	95740120	95737933	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95738278_95739872
transcript_59365.known	chr3	-	488	3	FSM	ENSMUSG00000054312.7	ENSMUST00000067298.5	488	3	0	0	0	0	multi-exon	FALSE	canonical	3	716	junction_2	92.5	6050	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAAGCTGTCTTATTGGTC	NA	False	NA	NA	False	AATAAA	-37	NA	95778831	95769945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95770245_95777805_95777928_95778764
transcript_59366.known	chr3	-	405	2	FSM	ENSMUSG00000054312.7	ENSMUST00000072587.5	405	2	0	0	0	0	multi-exon	FALSE	canonical	3	901	junction_1	0	1595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAGAAGGCTTGGACATA	NA	False	NA	NA	False	AATAAA	-17	NA	95777931	95769965	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95770245_95777805
transcript_59369.nnic	chr3	-	1132	6	NIC	ENSMUSG00000038550.11	novel	1939	5	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	72.7268863626101	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGCTTTTTTTTTTTTTT	NA	False	NA	-1	True	ATTAAA	-15	NA	95789385	95785814	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95788492_95788592_95789266
transcript_5937.known	chr1	-	1787	7	FSM	ENSMUSG00000037474.14	ENSMUST00000194064.2	1787	7	0	0	0	0	multi-exon	FALSE	canonical	3	466	junction_3	27.2621023074564	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAAAAAACTGAG	NA	False	NA	NA	False	TTTAAA	-8	NA	191307623	191292499	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_191293650_191295222_191295289_191300402_191300524_191300606_191300669_191301778_191301878_191302690_191302817_191307460
transcript_59370.known	chr3	-	1398	6	FSM	ENSMUSG00000038550.11	ENSMUST00000036418.10	1398	6	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_5	32.3604697122894	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAATGCTTTTTTTTTTTT	NA	False	NA	-3	True	ATTAAA	-13	NA	95789543	95785816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95788492_95788902_95789466
transcript_59375.known	chr3	-	752	6	FSM	ENSMUSG00000038543.14	ENSMUST00000036360.13	752	6	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	8.93532316147547	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATTTTGCCTACTTCTTA	NA	False	NA	NA	False	NA	NA	NA	95799267	95791269	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95791550_95792281_95792381_95795452_95795609_95796168_95796228_95797034_95797122_95799196
transcript_59379.known	chr3	-	809	6	FSM	ENSMUSG00000038543.14	ENSMUST00000090476.10	809	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	2.22710574513201	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCCTACTTCTTAATGA	NA	False	NA	NA	False	NA	NA	NA	95799317	95791265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95791550_95792281_95792384_95795452_95795609_95796168_95796228_95797034_95797122_95799196
transcript_59382.known	chr3	-	710	5	FSM	ENSMUSG00000038550.11	ENSMUST00000161866.8	710	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	75.7396857664461	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGGCGAGGAGCCTCGT	NA	False	NA	NA	False	AAGAAA	-2	NA	95789563	95786115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95789466
transcript_59383.known	chr3	-	551	4	FSM	ENSMUSG00000038543.14	ENSMUST00000145949.8	551	4	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	1.88561808316413	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCGAGGGGAAGAAAGGGTT	NA	False	NA	NA	False	NA	NA	NA	95799263	95795270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95795609_95796168_95796228_95797034_95797122_95799196
transcript_59384.known	chr3	+	353	2	FSM	ENSMUSG00000080727.3	ENSMUST00000143306.2	353	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTTGGACTTATTGTATA	NA	False	NA	NA	False	AATAAA	-18	NA	95778842	95782202	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_95778998_95782004
transcript_59385.known	chr3	-	1939	5	FSM	ENSMUSG00000038550.11	ENSMUST00000159739.8	1939	5	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_2	14.8723737177358	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGCTTTTTTTTTTTTTT	NA	False	NA	-1	True	ATTAAA	-15	NA	95789517	95785814	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95788492
transcript_59386.known	chr3	-	646	4	FSM	ENSMUSG00000038550.11	ENSMUST00000161994.2	646	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_3	64.5342286439272	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCGCATAGTGGGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	95789386	95787984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95788026_95788294_95788371_95788492_95788902_95789266
transcript_59387.known	chr3	-	1709	11	FSM	ENSMUSG00000038526.15	ENSMUST00000036181.15	1709	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1.32664991614216	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGAATGTTTTTTTGTG	7360	False	NA	NA	False	ATTAAA	-16	NA	95812003	95805079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95805525_95806112_95806198_95806288_95806310_95806535_95806657_95806742_95806901_95807051_95807119_95807242_95807339_95807554_95807698_95808404_95808585_95809422_95809444_95811631
transcript_59388.known	chr3	+	1601	7	FSM	ENSMUSG00000015750.16	ENSMUST00000056710.10	1601	7	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_6	85.2670641116617	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAAAGGACTTTATAAT	NA	False	NA	-20	True	NA	NA	NA	95801366	95804757	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_95801596_95802132_95802304_95802454_95802529_95802759_95802883_95803029_95803158_95803548_95803673_95804005
transcript_59390.known	chr3	+	2863	6	FSM	ENSMUSG00000015750.16	ENSMUST00000015894.12	2863	6	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_4	15.0651916682132	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACTCA	NA	False	NA	NA	False	AATACA	-4	NA	95801280	95805600	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_95801596_95802132_95802304_95802454_95802529_95802759_95802883_95803029_95803158_95803548
transcript_59393.known	chr3	+	3274	7	FSM	ENSMUSG00000015749.13	ENSMUST00000165307.8	3274	7	0	0	0	0	multi-exon	FALSE	canonical	3	1451	junction_5	106.857641540301	2978	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCTTCAGTGTGTGATTG	NA	False	NA	105	True	AATAAA	-22	NA	95836557	95854702	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845352_95851618_95851674_95852491
transcript_59395.known	chr3	+	1381	7	FSM	ENSMUSG00000015749.13	ENSMUST00000015893.13	1381	7	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_5	557.690301352123	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAGGTGTAGTTTGGTGC	NA	False	NA	12	True	ATTAAA	-15	NA	95836589	95852877	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845316_95851618_95851674_95852491
transcript_5940.known	chr1	+	5347	20	FSM	ENSMUSG00000037461.11	ENSMUST00000045450.7	5347	20	0	0	0	0	multi-exon	FALSE	canonical	2	189	junction_14	33.0659544051011	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCGTTGAGTGTGAAAGTAA	8193	False	NA	2	True	AATAAA	-12	NA	191307747	191355800	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_191308064_191314510_191314641_191315290_191315438_191318635_191318774_191326538_191326586_191328284_191328485_191328998_191329122_191334356_191334475_191336918_191337054_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750_191345855_191346690_191346760_191347812_191347946_191349923_191350023_191351707_191351894_191353276
transcript_59401.known	chr3	+	915	4	FSM	ENSMUSG00000015749.13	ENSMUST00000169426.8	915	4	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	725.485737665156	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTGTAATATGAAATGGCA	NA	False	NA	82	True	TATAAA	-17	NA	95836594	95852947	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_95836963_95845315_95845352_95851618_95851674_95852491
transcript_59403.known	chr3	-	266	2	FSM	ENSMUSG00000015747.6	ENSMUST00000140518.2	266	2	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTGGCATCATAATTATC	NA	False	NA	NA	False	AATAAA	-16	NA	95965031	95964198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_95964427_95964993
transcript_59407.known	chr3	+	8043	12	FSM	ENSMUSG00000038495.15	ENSMUST00000035519.12	8043	12	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	14.2242953608394	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTATTTCATTTCCTGT	NA	False	NA	12	True	AATAAA	-22	NA	96011838	96068446	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_96012132_96043784_96043936_96047727_96047917_96048798_96049027_96051551_96051654_96052278_96052407_96058178_96058292_96058654_96058783_96059211_96059362_96059829_96059945_96060724_96060810_96062085
transcript_59408.known	chr3	+	2778	17	FSM	ENSMUSG00000045934.16	ENSMUST00000054356.16	2778	17	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_4	1.93245310421754	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTGGTATTTTCTTGTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	96069320	96079034	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_96069576_96069945_96070037_96070408_96070531_96070784_96070846_96070984_96071128_96071564_96071644_96071749_96071886_96072102_96072191_96072313_96072403_96072487_96072613_96075127_96075195_96075388_96075460_96075914_96076082_96076351_96076526_96077122_96077306_96077668_96077963_96078401
transcript_59411.known	chr3	-	995	4	FSM	ENSMUSG00000015943.12	ENSMUST00000107099.8	995	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	207.889393668845	2262	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAACGGTGCTCTTAATAC	NA	False	NA	NA	False	AATAAA	-21	NA	96105805	96103903	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_96104596_96104865_96105054_96105480_96105543_96105752
transcript_59414.known	chr3	-	1020	1	FSM	ENSMUSG00000081058.6	ENSMUST00000167403.4	1020	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTATTGTTGCTCATTTAA	NA	False	NA	NA	False	NA	NA	NA	96146443	96145423	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_96145400_96146400
transcript_59415.known	chr3	+	586	1	FSM	ENSMUSG00000064220.7	ENSMUST00000078756.7	586	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGGTCTTGGTGGCCTTTC	NA	False	NA	NA	False	GATAAA	-17	NA	96152812	96153398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_96152800_96153400
transcript_59416.known	chr3	-	1630	1	FSM	ENSMUSG00000091405.3	ENSMUST00000171473.3	1630	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1216	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTATAGTCAAACAAACAAA	1796	False	NA	NA	False	NA	NA	NA	96170627	96168997	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_96169000_96170600
transcript_59417.known	chr3	+	166	1	FSM	ENSMUSG00000119427.1	ENSMUST00000239827.1	166	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATTTGGTAGTCTAAAAGT	NA	False	NA	NA	False	NA	NA	NA	96235740	96235906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_96235700_96235900
transcript_59418.known	chr3	-	165	1	FSM	ENSMUSG00000118876.1	ENSMUST00001239531.1	165	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTGTGGTGCTAAAAGT	2021	False	NA	NA	False	NA	NA	NA	96267433	96267268	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_96267300_96267400
transcript_59419.known	chr3	+	165	1	FSM	ENSMUSG00000119030.1	ENSMUST00000240438.1	165	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTGTGGTGCTAAAAGT	6307	False	NA	NA	False	NA	NA	NA	96281336	96281501	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_96281300_96281500
transcript_59420.known	chr3	+	166	1	FSM	ENSMUSG00000119774.1	ENSMUST00000083839.3	166	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAACTGGTAACCAAAAGCA	NA	False	NA	NA	False	NA	NA	NA	96357761	96357927	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_96357800_96357900
transcript_59421.known	chr3	-	166	1	FSM	ENSMUSG00000118677.1	ENSMUST00000240510.1	166	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAACTGGTAACCAAAAGCA	NA	False	NA	NA	False	NA	NA	NA	96367505	96367339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_96367300_96367500
transcript_59422.known	chr3	-	165	1	FSM	ENSMUSG00000118698.1	ENSMUST00000239775.1	165	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTCCTTGTATGACAAAA	7978	False	NA	NA	False	NA	NA	NA	96394035	96393870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_96393900_96394000
transcript_59423.known	chr3	+	165	1	FSM	ENSMUSG00000118936.1	ENSMUST00001239542.1	165	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTCCTTGTATGACAAAA	NA	False	NA	NA	False	NA	NA	NA	96396044	96396209	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_96396000_96396200
transcript_59424.known	chr3	+	2028	4	FSM	ENSMUSG00000038403.11	ENSMUST00000049208.11	2028	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.942809041582063	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCTGTCCTCTGTTGCCTC	NA	False	NA	NA	False	ATTAAA	-15	NA	96432487	96436526	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_96432647_96433744_96433919_96434350_96434899_96435379
transcript_59426.known	chr3	+	2827	8	FSM	ENSMUSG00000038393.15	ENSMUST00000074519.13	2827	8	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_1	78.2390371795021	728	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGATACTGGAGAAGTTAC	NA	False	NA	45	True	AATAAA	-40	NA	96465272	96469199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_96465802_96466204_96466281_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794
transcript_59428.known	chr3	+	2795	8	FSM	ENSMUSG00000038393.15	ENSMUST00000049093.8	2795	8	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	94.3746333956929	589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATAAATGTTCTTTTCT	NA	False	NA	19	True	AATAAA	-14	NA	96465275	96469173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_96465802_96466207_96466281_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794
transcript_59435.known	chr3	-	659	3	FSM	ENSMUSG00000074398.6	ENSMUST00000098839.3	659	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTCTTGTTTTTAAACC	NA	False	NA	NA	False	AATAAA	-16	NA	96465131	96463080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_96463377_96464601_96464905_96465071
transcript_59436.nic	chr3	-	815	2	ISM	ENSMUSG00000074398.6	ENSMUST00000098839.3	659	3	11	0	11	0	intron_retention	FALSE	canonical	2	2	junction_1	0	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTCTTGTTTTTAAACC	NA	False	NA	NA	False	AATAAA	-16	NA	96465120	96463080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_-_96463377_96464601
transcript_59438.known	chr3	-	1427	8	FSM	ENSMUSG00000028104.15	ENSMUST00000091924.10	1427	8	0	0	0	0	multi-exon	TRUE	canonical	3	65	junction_6	13.8534604827436	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTCTAACAGAGTGATGT	NA	False	NA	0	True	NA	NA	NA	96501497	96485187	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_96485905_96487113_96487228_96487331_96487406_96487765_96487823_96488150_96488220_96488959_96489090_96489403_96489572_96501399
transcript_59439.known	chr3	-	607	7	FSM	ENSMUSG00000028104.15	ENSMUST00000145001.2	607	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	26.9794160220137	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCTGGGCATAGACTGA	NA	False	NA	NA	False	NA	NA	NA	96501475	96485817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_96485905_96487113_96487228_96487331_96487406_96487765_96487823_96488150_96488220_96488959_96489090_96501399
transcript_59450.nnic	chr3	+	753	2	NNC	ENSMUSG00000087610.2	novel	550	2	NA	NA	-7590	5	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	15	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGGGCACTGTTGTTAC	NA	False	NA	NA	False	AATAAA	-24	NA	96476709	96487984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_96477123_96487644
transcript_59452.known	chr3	+	3312	6	FSM	ENSMUSG00000049288.5	ENSMUST00000062058.5	3312	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.71293199325011	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGAATGACTTTTTTCCC	NA	False	NA	19	True	ATTAAA	-21	NA	96508464	96533487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_96508790_96521707_96521872_96525916_96526058_96528624_96528721_96529458_96529537_96530979
transcript_59454.nic	chr3	+	591	2	ISM	ENSMUSG00000049288.5	ENSMUST00000062058.5	3312	6	20860	2129	3708	1814	3prime_fragment	FALSE	canonical	3	7	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGGCTCCCTATTTGCT	711	False	NA	NA	False	TATAAA	-6	NA	96529324	96531358	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_96529537_96530979
transcript_59471.known	chr3	+	2235	4	FSM	ENSMUSG00000028102.16	ENSMUST00000144962.8	2235	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	127.753234357839	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCCTCAGAAAGGGTCAAAA	NA	False	NA	3	True	AATAAA	-19	NA	96542691	96552682	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_96542817_96543989_96544106_96544446_96544649_96550890
transcript_59472.known	chr3	+	1562	4	FSM	ENSMUSG00000028102.16	ENSMUST00000165842.3	1562	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	131.995791178692	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTTTTTATTCAATTCA	NA	False	NA	9	True	ATTAAA	-16	NA	96543148	96552042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_96543241_96543989_96544106_96544446_96544649_96550890
transcript_59473.known	chr3	+	1122	5	FSM	ENSMUSG00000028102.16	ENSMUST00000048766.15	1122	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	117.48829728956	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTTTTTATTCAATTCA	NA	False	NA	9	True	ATTAAA	-16	NA	96542987	96552042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_96543060_96543989_96544106_96544446_96544649_96550890_96551332_96551751
transcript_59474.known	chr3	+	1017	4	FSM	ENSMUSG00000028102.16	ENSMUST00000156015.2	1017	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	117.382565428886	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATGGTCACTGTGTGCCA	NA	False	NA	NA	False	NA	NA	NA	96542815	96551349	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_96543056_96543989_96544106_96544446_96544649_96550890
transcript_59478.nic	chr3	+	2499	5	ISM	ENSMUSG00000038354.14	ENSMUST00000122960.6	3295	14	12781	0	3015	0	3prime_fragment	FALSE	canonical	3	58	junction_4	19.7294196569489	229	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAGCAGAAAACAGA	NA	False	NA	-7	True	NA	NA	NA	96590423	96598325	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_96592491_96596461_96596552_96596760_96596827_96597507_96597613_96598154
transcript_59479.nnic	chr3	+	1651	5	NNC	ENSMUSG00000038354.14	novel	4052	13	NA	NA	3800	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	41.9463943623287	32	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTATTGTTGTGGTTTTTG	NA	False	NA	16	True	AATAAA	-16	NA	96591208	96598348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_96592491_96596461_96596552_96596760_96596827_96597507_96597613_96598240
transcript_5948.known	chr1	+	849	3	FSM	ENSMUSG00000037461.11	ENSMUST00000192681.2	849	3	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_2	18	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTAGTCTCTGTTCTGGA	8333	False	NA	NA	False	ATTAAA	-30	NA	191307887	191315833	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_191308064_191314510_191314641_191315290
transcript_59482.nnic	chr3	+	494	5	NNC	ENSMUSG00000038354.14	novel	4052	13	NA	NA	8894	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	43.2861120915242	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAGCAGAAAACAGA	NA	False	NA	-7	True	NA	NA	NA	96596302	96598325	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_96596365_96596461_96596552_96596760_96596827_96597507_96597613_96598154
transcript_59484.nic	chr3	+	1776	4	ISM	ENSMUSG00000038354.14	ENSMUST00000122960.6	3295	14	14069	-23	4303	0	intron_retention	FALSE	canonical	3	87	junction_1	10.2740233382816	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTATTGTTGTGGTTTTTG	NA	False	NA	16	True	AATAAA	-16	NA	96591711	96598348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_96592491_96596461_96596552_96596760_96596827_96597507
transcript_59489.known	chr3	+	2695	15	FSM	ENSMUSG00000028101.19	ENSMUST00000107077.4	2695	15	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	45.7727304969111	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGGGGAAGGGATGTTGT	3321	False	NA	16	True	AATAAA	-26	NA	96604432	96613289	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_96604512_96606735_96606970_96607074_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664_96611703_96612164
transcript_59490.known	chr3	+	2858	14	FSM	ENSMUSG00000028101.19	ENSMUST00000107076.10	2858	14	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	28.3212760050852	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCGTCATGGAGGGGA	2588	False	NA	5	True	AATAAA	-15	NA	96603699	96613278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_96603848_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664_96611703_96612164
transcript_59493.known	chr3	+	2931	14	FSM	ENSMUSG00000028101.19	ENSMUST00000064900.16	2931	14	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_1	24.6852374253431	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAAAGTGTTTATTACTG	3287	False	NA	113	True	AAAAAG	-4	NA	96604398	96613386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_96604512_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664_96611703_96612164
transcript_59501.known	chr3	-	1110	8	FSM	ENSMUSG00000028100.12	ENSMUST00000171249.6	1110	8	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	6.53405521487387	381	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTTTTTTTTTTAAGTG	NA	False	NA	-2	True	AATAAA	-13	NA	96615878	96613384	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_96613560_96613683_96613845_96614225_96614363_96614517_96614617_96614873_96614967_96615099_96615126_96615307_96615492_96615643
transcript_59503.known	chr3	-	2406	15	FSM	ENSMUSG00000028099.9	ENSMUST00000154679.8	2406	15	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_14	52.4860039652944	776	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATGTATCTGTTCTTAG	NA	False	NA	NA	False	AATAAA	-17	NA	96634757	96618838	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_96619377_96620796_96620947_96621410_96621461_96621574_96621677_96622435_96622587_96622949_96623011_96623744_96623797_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96630829_96631016_96631112_96631369_96633149_96633316_96634428
transcript_59504.known	chr3	-	2390	15	FSM	ENSMUSG00000028099.9	ENSMUST00000029741.9	2390	15	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_5	23.0394515240839	844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGGTCAGCACGATAAGGA	NA	False	NA	NA	False	CATAAA	-34	NA	96634944	96618805	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_96619377_96620796_96620947_96621410_96621461_96621574_96621677_96622435_96622587_96622949_96623011_96623744_96623797_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96630829_96631016_96631112_96631369_96633149_96633316_96634664
transcript_5951.known	chr1	+	3069	19	FSM	ENSMUSG00000037461.11	ENSMUST00000194877.6	3069	19	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	68.875894831856	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAATAACCTGGCTCTCA	8299	False	NA	NA	False	NA	NA	NA	191307853	191353758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_191308064_191315290_191315438_191318635_191318774_191326538_191326586_191328284_191328485_191328998_191329122_191334356_191334475_191336918_191337054_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750_191345855_191346690_191346760_191347812_191347946_191349923_191350023_191351707_191351894_191353276
transcript_59518.known	chr3	-	808	4	FSM	ENSMUSG00000028099.9	ENSMUST00000141377.8	808	4	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_1	11.8415464455544	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGGTGTGTGCCAGTCAT	NA	False	NA	-1	True	AATGAA	-22	NA	96634770	96630735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_96631016_96631112_96631369_96633149_96633316_96634664
transcript_5952.known	chr1	+	7233	8	FSM	ENSMUSG00000026623.17	ENSMUST00000110855.8	7233	8	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	23.0757404197215	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGTGGCCTTGTTCTTAA	NA	False	NA	9	True	AATAAA	-18	NA	191449945	191516367	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_191450318_191451465_191451731_191481651_191481771_191488043_191488140_191492085_191492360_191495656_191495784_191508434_191508542_191510494
transcript_59524.known	chr3	-	923	3	FSM	ENSMUSG00000028099.9	ENSMUST00000125183.2	923	3	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_1	7.5	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTTGGTGTGTGCCAGT	NA	False	NA	-4	True	AATGAA	-19	NA	96634791	96630738	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_96631369_96633149_96633316_96634664
transcript_59526.nic	chr3	-	1639	2	ISM	ENSMUSG00000028099.9	ENSMUST00000125183.2	923	3	-15	1080	-14	-1080	5prime_fragment	FALSE	canonical	3	222	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAATCAGACATAAT	NA	False	NA	NA	False	NA	NA	NA	96634806	96631818	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_-_96633316_96634664
transcript_59529.known	chr3	-	795	1	FSM	ENSMUSG00000104795.2	ENSMUST00000197075.2	795	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96632636	96631841	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_96631800_96632600
transcript_59531.known	chr3	+	2209	9	FSM	ENSMUSG00000028098.14	ENSMUST00000029740.14	2209	9	0	0	0	0	multi-exon	FALSE	canonical	3	647	junction_7	60.034885691571	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAGCTTCAGCGTCTCAA	4795	False	NA	14	True	AATAAA	-21	NA	96634979	96698468	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_96635227_96661650_96661710_96665292_96665351_96682945_96683158_96690963_96691036_96692308_96692382_96693246_96693341_96695885_96696002_96697190
transcript_5954.nnic	chr1	+	1930	9	NNC	ENSMUSG00000026622.16	novel	3227	8	NA	NA	-25	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	151.790151195656	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTGATGTTTGTATTC	NA	False	NA	28	True	TATAAA	-39	NA	191553596	191565161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_191553854_191554258_191554477_191554603_191554845_191557594_191557678_191558334_191558462_191559261_191559482_191561503_191561630_191563248_191563734_191564988
transcript_59542.known	chr3	-	4598	14	FSM	ENSMUSG00000028096.14	ENSMUST00000029738.14	4598	14	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_5	18.4284960714547	182	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCTGAGCAATTACACGT	1863	False	NA	NA	False	AATAAA	-14	NA	96812662	96775596	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_96778911_96779792_96779859_96780775_96780866_96782943_96783040_96787389_96787483_96787936_96788026_96789834_96789945_96797224_96797306_96798118_96798240_96800181_96800284_96800813_96800921_96804648_96804753_96805807_96805868_96812497
transcript_59547.known	chr3	+	2406	9	FSM	ENSMUSG00000038298.15	ENSMUST00000058865.14	2406	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	6.6226410894748	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGTAAAATCTATCTGTT	7719	False	NA	NA	False	AATAAA	-22	NA	96737391	96778242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_96737473_96757543_96757756_96758806_96759057_96761849_96761987_96763170_96763367_96764510_96764708_96775623_96775849_96776256_96776548_96777425
transcript_5955.nnic	chr1	+	1909	9	NNC	ENSMUSG00000026622.16	novel	3227	8	NA	NA	-25	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	182.838342190581	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTGATGTTTGTATTC	NA	False	NA	28	True	TATAAA	-39	NA	191553596	191565161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_191553854_191554258_191554477_191554603_191554845_191557594_191557678_191558334_191558462_191559261_191559482_191561503_191561630_191563269_191563734_191564988
transcript_5956.known	chr1	+	3227	8	FSM	ENSMUSG00000026622.16	ENSMUST00000027931.8	3227	8	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_7	41.1061344049071	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTGATGTTTGTATTCT	NA	False	NA	29	True	TATAAA	-40	NA	191553555	191565162	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_191553854_191554258_191554477_191554603_191554845_191557594_191557678_191558334_191558462_191559261_191559482_191561503_191561630_191563248
transcript_59563.known	chr3	+	1754	10	FSM	ENSMUSG00000028093.16	ENSMUST00000090759.5	1754	10	0	0	0	0	multi-exon	FALSE	canonical	3	1030	junction_1	83.6891662236509	4536	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGTTTTGCCTGTGTGT	NA	False	NA	11	True	NA	NA	NA	97066092	97083890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_97066682_97073158_97073288_97073389_97073521_97073855_97073933_97075302_97075391_97075756_97075890_97078957_97079059_97081118_97081215_97082943_97083110_97083646
transcript_59564.nic	chr3	-	1653	5	NIC	ENSMUSG00000038256.16	novel	6102	10	NA	NA	-27	-12	combination_of_known_junctions	FALSE	canonical	2	6	junction_4	15.1079449297381	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAACAAA	3649	False	NA	NA	False	ATTAAA	-16	NA	97205260	97121811	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_-_97122745_97123628_97123942_97129094_97129178_97131157_97131294_97205072
transcript_59565.known	chr3	-	453	4	FSM	ENSMUSG00000038256.16	ENSMUST00000196586.2	453	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	14.0554457615387	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGGACCCACTTCCACAG	3676	False	NA	NA	False	NA	NA	NA	97205233	97123868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_97123942_97129094_97129178_97131157_97131294_97205072
transcript_59568.nnic	chr3	-	2992	23	NNC	ENSMUSG00000028089.6	novel	3008	23	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	68.3504732250088	60	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTATGTTGCTTTTTT	NA	False	NA	-8	True	AATAGA	-13	NA	97517527	97468057	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_97468404_97469894_97470004_97470772_97470888_97474074_97474146_97476416_97476516_97477517_97477721_97478219_97478384_97479876_97480026_97488318_97488494_97490032_97490187_97491123_97491239_97494426_97494538_97495555_97495630_97497221_97497319_97497869_97497963_97498520_97498677_97501323_97501487_97505007_97505090_97509337_97509370_97510324_97510440_97510975_97511083_97512413_97512527_97517378
transcript_59574.nnic	chr3	-	2042	16	NNC	ENSMUSG00000028089.6	novel	3008	23	NA	NA	-8	-1369	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	71.5978274034128	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTCTAAAAGCATTGGTCA	NA	False	NA	NA	False	AATAAA	-32	NA	97517527	97479719	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_97480026_97488318_97488494_97490032_97490187_97491123_97491239_97494426_97494538_97495555_97495630_97497221_97497319_97497869_97497963_97498520_97498677_97501323_97501487_97505007_97505090_97509337_97509370_97510324_97510440_97510975_97511083_97512413_97512527_97517378
transcript_59575.nic	chr3	-	1202	10	ISM	ENSMUSG00000028089.6	ENSMUST00000197304.2	2941	16	-19	18776	-8	-18776	5prime_fragment	FALSE	canonical	0	0	junction_3	86.2914956541038	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTTCTTGAGATTGGCC	NA	False	NA	NA	False	ATTAAA	-17	NA	97517527	97497126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_-_97497319_97497869_97497963_97498520_97498677_97501323_97501487_97505007_97505090_97509337_97509370_97510324_97510440_97510975_97511083_97512413_97512527_97517378
transcript_59583.known	chr3	-	3008	23	FSM	ENSMUSG00000028089.6	ENSMUST00000029730.5	3008	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	88.0793336047933	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTATGTTGCTTTTTT	NA	False	NA	-8	True	AATAGA	-13	NA	97517519	97468057	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_97468404_97469894_97470004_97470772_97470888_97474074_97474146_97476416_97476516_97477517_97477721_97478219_97478384_97479876_97480026_97488294_97488494_97490032_97490187_97491123_97491239_97494426_97494538_97495555_97495630_97497221_97497319_97497869_97497963_97498520_97498677_97501323_97501487_97505007_97505090_97509337_97509370_97510324_97510440_97510975_97511083_97512413_97512527_97517378
transcript_59584.known	chr3	+	5006	8	FSM	ENSMUSG00000038205.13	ENSMUST00000045743.13	5006	8	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	11.768168758068	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGAGTTACTTACTGAT	NA	False	NA	NA	False	AATAAA	-20	NA	97565527	97581128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_97565686_97565904_97566083_97569588_97569756_97570897_97570992_97571183_97571305_97573897_97574032_97574674_97574744_97577043
transcript_59589.nic	chr3	+	715	3	ISM	ENSMUSG00000038205.13	ENSMUST00000143927.8	1878	7	18	8149	-1	-8149	5prime_fragment	FALSE	canonical	3	53	junction_1	6	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATTGTAGGTATAATGTC	NA	False	NA	NA	False	ATTAAA	-15	NA	97565526	97569966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_97565686_97565904_97566083_97569588
transcript_59590.known	chr3	+	1355	5	FSM	ENSMUSG00000027879.10	ENSMUST00000130778.2	1355	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	133.810500335362	911	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATGCCTTGAAATTATAT	NA	False	NA	-25	True	ATTAAA	-11	NA	97808531	97829167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_97808737_97814540_97814647_97819894_97820056_97821815_97821963_97828431
transcript_59591.known	chr3	+	640	2	FSM	ENSMUSG00000027879.10	ENSMUST00000130620.2	640	2	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_1	0	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGTGTGTTGTTTCCTTGT	NA	False	NA	NA	False	AATAAA	-44	NA	97808540	97814980	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_97808737_97814536
transcript_59592.known	chr3	+	1177	4	FSM	ENSMUSG00000027879.10	ENSMUST00000122288.2	1177	4	0	0	0	0	multi-exon	FALSE	canonical	3	341	junction_2	4.18993502999218	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAAAAAAAAGAT	NA	False	NA	NA	False	TTTAAA	-29	NA	97808542	97822527	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_97808737_97814536_97814647_97819894_97820056_97821815
transcript_59597.known	chr3	-	1893	12	FSM	ENSMUSG00000053398.12	ENSMUST00000065793.12	1893	12	0	0	0	0	multi-exon	FALSE	canonical	3	1070	junction_1	240.376770374213	6482	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTGTCTGTGTGATCAT	NA	False	NA	-2	True	AGTAAA	-16	NA	98247306	98220485	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_98220774_98221483_98221722_98222380_98222512_98223721_98223855_98226935_98227089_98227961_98228111_98228528_98228662_98235362_98235462_98235604_98235660_98240550_98240617_98241822_98241975_98247010
transcript_5960.known	chr1	+	2044	6	FSM	ENSMUSG00000026622.16	ENSMUST00000126446.8	2044	6	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_5	34.4360276454762	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTTATATGCTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	191553621	191560404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_191553854_191554258_191554477_191554603_191554845_191557594_191557678_191558334_191558462_191559261
transcript_59601.nnic	chr3	+	938	6	NNC	ENSMUSG00000004233.15	novel	4410	6	NA	NA	-1	-1478	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	17.2973986483517	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAAAATTTGAGAAACTTT	NA	False	NA	NA	False	NA	NA	NA	99048382	99122439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_99048505_99094796_99095055_99111851_99111933_99112540_99112627_99121971_99122091_99122167
transcript_59602.known	chr3	+	4410	6	FSM	ENSMUSG00000004233.15	ENSMUST00000004343.7	4410	6	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	3.66606055596467	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAGTAAAATTAAAA	NA	False	NA	NA	False	NA	NA	NA	99048383	99127519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_99048505_99094796_99095055_99111851_99111933_99112540_99112627_99121971_99122091_99123774
transcript_59607.nic	chr3	+	1022	5	ISM	ENSMUSG00000004233.15	ENSMUST00000004343.7	4410	6	-1	5073	-1	-1471	5prime_fragment	FALSE	canonical	3	38	junction_2	3.57071421427143	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTGAGAAACTTTTAAAAAT	NA	False	NA	NA	False	NA	NA	NA	99048382	99122446	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_99048505_99094796_99095055_99111851_99111933_99112540_99112627_99121971
transcript_59613.known	chr3	+	403	4	FSM	ENSMUSG00000004233.15	ENSMUST00000198044.2	403	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	21.4527905462721	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGAGGTCACCTACGAGCC	NA	False	NA	NA	False	NA	NA	NA	99048411	99123917	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_99048505_99111851_99111933_99112540_99112627_99123774
transcript_59618.nic	chr3	-	3380	27	NIC	ENSMUSG00000033285.16	novel	3432	27	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	79	junction_25	119.848400294933	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGGTTCCCTGAATAT	NA	False	NA	-15	True	ATTAAA	-15	NA	100069726	100045495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_-_100046159_100046374_100046469_100047494_100047624_100048870_100048915_100049528_100049577_100049768_100049862_100050270_100050337_100050718_100050770_100051008_100051144_100051634_100051747_100051874_100051976_100052950_100053008_100053747_100053884_100054016_100054103_100055420_100055523_100057182_100057277_100058278_100058510_100059223_100059329_100060122_100060221_100060861_100060964_100061177_100061292_100062238_100062335_100063695_100063775_100064639_100064759_100067081_100067237_100068335_100068539_100069659
transcript_5962.known	chr1	-	1624	1	FSM	ENSMUSG00000102840.2	ENSMUST00000192600.2	1624	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAGTATAAGCTAATTGGA	NA	False	NA	NA	False	NA	NA	NA	191554105	191552481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_191552500_191554100
transcript_59620.known	chr3	-	3432	27	FSM	ENSMUSG00000033285.16	ENSMUST00000052120.14	3432	27	0	0	0	0	multi-exon	FALSE	canonical	3	562	junction_13	50.4098586206493	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGGTTCCCTGAATAT	NA	False	NA	-15	True	ATTAAA	-15	NA	100069723	100045495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_100046159_100046374_100046469_100047494_100047624_100048870_100048915_100049528_100049577_100049768_100049862_100050270_100050337_100050718_100050770_100051008_100051144_100051634_100051747_100051874_100051976_100052950_100053008_100053747_100053884_100054016_100054103_100055420_100055523_100057182_100057277_100058278_100058510_100059223_100059329_100060122_100060221_100060861_100060964_100061177_100061292_100062238_100062335_100063695_100063775_100064639_100064759_100067081_100067292_100068335_100068539_100069659
transcript_59625.known	chr3	+	3008	14	FSM	ENSMUSG00000027865.11	ENSMUST00000029459.10	3008	14	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_11	11.7054581917706	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTATAAGGTGTTCTAT	NA	False	NA	NA	False	AATAAA	-13	NA	100069696	100114297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_100069982_100077251_100077492_100078213_100078354_100085158_100085313_100085549_100085639_100089992_100090070_100093885_100094046_100095189_100095350_100098201_100098279_100098942_100099020_100101805_100101946_100103858_100103914_100109289_100109434_100113087
transcript_59630.known	chr3	+	2014	13	FSM	ENSMUSG00000027865.11	ENSMUST00000106997.2	2014	13	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_11	11.971029845237	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100069833	100109786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_100069982_100077251_100077492_100078213_100078354_100085158_100085313_100085549_100085639_100089992_100090070_100093885_100094046_100095189_100095350_100098201_100098279_100098942_100099020_100101805_100101946_100103858_100103914_100109289
transcript_59637.known	chr3	-	508	3	FSM	ENSMUSG00000008763.17	ENSMUST00000123442.2	508	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	61	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGACATGGAGATCAAGAA	NA	False	NA	NA	False	NA	NA	NA	100592624	100563376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_100563591_100591876_100592004_100592457
transcript_59639.known	chr3	-	7969	13	FSM	ENSMUSG00000008763.17	ENSMUST00000008907.14	7969	13	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_4	6.86122357082823	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAAGTCTCTCTCTCTTTT	NA	False	NA	-1	True	AATAAA	-15	NA	100592819	100469523	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_100475059_100485791_100485908_100489300_100489474_100495033_100495254_100499148_100499265_100524278_100524373_100527344_100527469_100539819_100539915_100551856_100551938_100554307_100554427_100559854_100559952_100563334_100563591_100591876
transcript_5964.known	chr1	-	340	2	FSM	ENSMUSG00000097416.4	ENSMUST00000226862.2	340	2	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTCTTAGCACCATTTT	NA	False	NA	NA	False	NA	NA	NA	191722099	191718792	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_191718987_191721953
transcript_59640.known	chr3	+	4612	6	FSM	ENSMUSG00000033233.18	ENSMUST00000037409.13	4612	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	2.33238075793812	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTTTGTTTGGCTTTACT	4331	False	NA	NA	False	NA	NA	NA	100829790	100841327	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_100830716_100832256_100832991_100834540_100834671_100835370_100835486_100837132_100837260_100838746
transcript_59641.known	chr3	-	4541	23	FSM	ENSMUSG00000033222.17	ENSMUST00000076941.12	4541	23	0	0	0	0	multi-exon	TRUE	canonical	3	226	junction_14	22.0712594988997	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGTGATGCTGTGTGTT	NA	False	NA	-7	True	AATAAA	-17	NA	100876979	100846175	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_100847429_100849142_100849218_100850972_100851056_100852030_100852182_100853207_100853267_100854713_100854885_100855460_100855595_100856396_100856480_100857150_100857243_100857499_100857654_100858317_100858500_100859864_100859971_100861506_100861658_100863501_100863622_100865179_100865262_100866501_100866630_100868566_100868750_100869016_100869132_100869868_100870784_100871371_100871442_100874321_100874409_100876748_100876852_100876935
transcript_59643.nic	chr3	-	1112	3	ISM	ENSMUSG00000033222.17	ENSMUST00000127357.2	4544	17	-28	19806	-28	-7396	5prime_fragment	FALSE	canonical	3	266	junction_1	3.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAACTGACCCTAAGTT	NA	False	NA	NA	False	NA	NA	NA	100877007	100873471	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_-_100874409_100876748_100876852_100876935
transcript_59645.known	chr3	-	5902	9	FSM	ENSMUSG00000027864.10	ENSMUST00000102694.4	5902	9	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_8	11.5515150521479	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACTTGTGTGAGGAAGTT	4781	False	NA	-3	True	ATTAAA	-18	NA	101017594	100947547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_100950839_100952759_100953066_100957405_100957514_100963551_100963972_100967952_100968379_100980125_100980507_100984358_100984773_100987443_100987813_101017407
transcript_59646.known	chr3	-	1153	5	FSM	ENSMUSG00000027863.9	ENSMUST00000029456.5	1153	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	2	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGCCCACTCTTCCGTCT	NA	False	NA	NA	False	AATAAA	-31	NA	101195255	101183214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_101183590_101187103_101187227_101190346_101190578_101194722_101195032_101195140
transcript_59648.known	chr3	-	968	2	FSM	ENSMUSG00000027863.9	ENSMUST00000156103.2	968	2	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGGTGAGCATGCCCACT	NA	False	NA	NA	False	AATAAA	-22	NA	101187705	101183223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_101183590_101187103
transcript_5965.known	chr1	-	1844	12	FSM	ENSMUSG00000037395.17	ENSMUST00000192866.6	1844	12	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	6.62077871128477	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGTACCAGTGCTCATC	NA	False	NA	NA	False	NA	NA	NA	191822359	191785086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_191785456_191785925_191786168_191792943_191793002_191800568_191800647_191804214_191804434_191807838_191807918_191808542_191808668_191810165_191810328_191812275_191812329_191814682_191814761_191821732_191821790_191822035
transcript_59651.known	chr3	+	1855	2	FSM	ENSMUSG00000042035.12	ENSMUST00000198995.5	1855	2	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAGAAAAAAAAGAAA	252	False	NA	NA	False	NA	NA	NA	101284398	101286856	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_101284519_101285121
transcript_59652.known	chr3	-	3679	23	FSM	ENSMUSG00000033161.11	ENSMUST00000036493.8	3679	23	0	0	0	0	multi-exon	FALSE	canonical	3	297	junction_17	44.2662166204014	725	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGAGTCCTTGTCGTTT	NA	False	NA	-6	True	AATAAA	-24	NA	101512000	101483534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_101483901_101484234_101484327_101486309_101486412_101486836_101486968_101487089_101487236_101488462_101488587_101489040_101489196_101489317_101489487_101490003_101490155_101491060_101491198_101492038_101492215_101493442_101493636_101494131_101494267_101496321_101496432_101497082_101497282_101497762_101498032_101498436_101498555_101498655_101498791_101499096_101499211_101499693_101499898_101501518_101501579_101502313_101502425_101511718
transcript_59658.nnic	chr3	-	583	4	Antisense	novelGene_ENSMUSG00000027861.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	1.63299316185545	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTTTTACATCCACTT	NA	False	NA	NA	False	NA	NA	NA	102060400	102047032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr3_-_102047340_102047764_102047905_102048342_102048421_102060342
transcript_59660.known	chr3	-	6531	8	FSM	ENSMUSG00000027860.16	ENSMUST00000029453.13	6531	8	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_4	79.9721890434929	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCATAGTGCAGTTCTTG	NA	False	NA	NA	False	AATAAA	-17	NA	102112009	102060898	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_102065814_102070614_102070850_102072670_102072804_102074153_102074288_102091266_102091875_102096724_102096864_102104107_102104293_102111827
transcript_59666.known	chr3	-	818	5	FSM	ENSMUSG00000027860.16	ENSMUST00000161021.2	818	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_4	100.023434754062	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATGTCCAGGAGGAAGTT	NA	False	NA	NA	False	AAAACA	-27	NA	102074246	102065495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_102065814_102070614_102070850_102072670_102072804_102073088_102073128_102074153
transcript_5967.known	chr1	-	2214	11	FSM	ENSMUSG00000026637.15	ENSMUST00000195815.3	2214	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	1.02469507659596	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGCCTGGGGCTCCTCTCT	NA	False	NA	NA	False	NA	NA	NA	191776868	191729167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_191729969_191731758_191731928_191733717_191733859_191738764_191738858_191741554_191741630_191742389_191742468_191743409_191743575_191746941_191747044_191751193_191751252_191754716_191754936_191776555
transcript_5968.known	chr1	-	1578	11	FSM	ENSMUSG00000037395.17	ENSMUST00000192128.6	1578	11	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	6.37887137352682	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTGTTGGGTTTTTTGTT	NA	False	NA	NA	False	AATAAA	-16	NA	191822224	191785687	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_191786168_191792943_191793002_191800568_191800647_191804214_191804434_191807838_191807918_191808542_191808668_191810165_191810328_191812275_191812329_191814682_191814761_191821732_191821790_191822035
transcript_5969.known	chr1	-	1623	10	FSM	ENSMUSG00000037395.17	ENSMUST00000192491.6	1623	10	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	11.5373788665845	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGGGTTTTTTGTTTCTT	NA	False	NA	NA	False	AATAAA	-20	NA	191822323	191785683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_191786168_191800568_191800647_191804214_191804434_191807838_191807918_191808542_191808668_191810165_191810328_191812275_191812329_191814682_191814761_191821732_191821790_191822035
transcript_59722.known	chr3	-	617	3	FSM	ENSMUSG00000027860.16	ENSMUST00000160226.8	617	3	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_2	64	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATCTATGTACTTGTGTG	NA	False	NA	-11	True	NA	NA	NA	102074289	102070501	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_102070850_102072670_102072804_102074153
transcript_59723.known	chr3	-	472	3	FSM	ENSMUSG00000027860.16	ENSMUST00000162361.2	472	3	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_2	87.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAGCATGGAGAGTATCC	NA	False	NA	NA	False	NA	NA	NA	102073256	102070678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_102070850_102072670_102072804_102073088
transcript_59724.known	chr3	+	904	3	FSM	ENSMUSG00000027859.11	ENSMUST00000035952.5	904	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTGCAGCCCCCTTCC	NA	False	NA	NA	False	NA	NA	NA	102377234	102428164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_102377277_102421271_102421396_102427426
transcript_59725.known	chr3	+	4484	8	FSM	ENSMUSG00000027858.14	ENSMUST00000029451.12	4484	8	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	8.2065180664829	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATACAGAGGAACTACTGAA	NA	False	NA	NA	False	ATTAAA	-31	NA	102641844	102679608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_102642382_102657073_102657177_102664608_102664707_102665472_102665548_102666625_102666725_102668212_102668285_102672500_102672585_102676192
transcript_59729.known	chr3	-	590	4	FSM	ENSMUSG00000086745.2	ENSMUST00000146624.2	590	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4.10960933531265	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATGTTGAATTAGCAAATT	NA	False	NA	NA	False	NA	NA	NA	102642733	102627546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_102627764_102633643_102633728_102634314_102634414_102642543
transcript_59731.nnic	chr3	-	482	3	NNC	ENSMUSG00000086745.2	novel	590	4	NA	NA	8675	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	1.5	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATGTTGAATTAGCAAATT	NA	False	NA	NA	False	NA	NA	NA	102634058	102627546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_102627764_102633643_102633728_102633877
transcript_59732.nic	chr3	-	562	3	ISM	ENSMUSG00000086745.2	ENSMUST00000146624.2	590	4	8158	0	8158	0	3prime_fragment	FALSE	canonical	2	4	junction_1	3	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATGTTGAATTAGCAAATT	NA	False	NA	NA	False	NA	NA	NA	102634575	102627546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_-_102627764_102633643_102633728_102634314
transcript_59737.nic	chr3	-	3323	32	NIC	ENSMUSG00000027855.14	novel	3437	33	NA	NA	-57	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_31	16.9376649901153	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTTCTCATTGATTTT	NA	False	NA	-2	True	ATTAAA	-14	NA	102843473	102725814	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_-_102726279_102726371_102726459_102727854_102727999_102748177_102748358_102752347_102752405_102758879_102758955_102759434_102759528_102760703_102760815_102761426_102761544_102772172_102772236_102772389_102772453_102783618_102783682_102786089_102786172_102800853_102800925_102803170_102803289_102806169_102806274_102807347_102807453_102816221_102816284_102820736_102820805_102822471_102822657_102823119_102823215_102827844_102827954_102829703_102829778_102830316_102830387_102832516_102832576_102836564_102836639_102838943_102839012_102841520_102841578_102841922_102841967_102842124_102842198_102842859_102842976_102843301
transcript_59738.nic	chr3	-	3346	32	NIC	ENSMUSG00000027855.14	novel	3437	33	NA	NA	-74	0	combination_of_known_junctions	FALSE	canonical	3	64	junction_8	14.4403037547212	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTTCTCATTGATTTT	NA	False	NA	-2	True	ATTAAA	-14	NA	102843490	102725814	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_-_102726279_102726371_102726459_102727854_102727999_102748177_102748358_102752347_102752405_102758879_102758955_102759434_102759528_102760703_102760815_102761426_102761544_102772172_102772236_102772389_102772453_102783618_102783682_102786089_102786172_102800853_102800925_102803170_102803289_102806169_102806274_102807347_102807453_102816221_102816284_102820736_102820805_102822471_102822657_102823119_102823215_102827844_102827954_102829703_102829778_102830316_102830387_102832516_102832576_102836564_102836639_102838943_102839012_102841520_102841578_102841922_102841967_102842124_102842198_102842859_102842982_102843301
transcript_5975.known	chr1	-	631	1	FSM	ENSMUSG00000103653.2	ENSMUST00000195526.2	631	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	117	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGACTGAAGAGACAAGAGC	NA	False	NA	NA	False	NA	NA	NA	191758750	191758119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_191758100_191758800
transcript_59752.known	chr3	-	3437	33	FSM	ENSMUSG00000027855.14	ENSMUST00000029448.11	3437	33	0	0	0	0	multi-exon	TRUE	canonical	3	8	junction_28	23.7190382064176	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTTCTCATTGATTTT	NA	False	NA	-2	True	ATTAAA	-14	NA	102843416	102725814	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_102726279_102726371_102726459_102727854_102727999_102748177_102748358_102752347_102752405_102758879_102758955_102759434_102759528_102760703_102760815_102761426_102761544_102772172_102772236_102772389_102772453_102783618_102783682_102786089_102786172_102800853_102800925_102803170_102803289_102806169_102806274_102807347_102807453_102816221_102816284_102820736_102820805_102822471_102822657_102823119_102823215_102827844_102827954_102829703_102829778_102830316_102830387_102832516_102832576_102836564_102836639_102838943_102839012_102839958_102840124_102841520_102841578_102841922_102841967_102842124_102842198_102842859_102842982_102843301
transcript_59753.known	chr3	-	665	9	FSM	ENSMUSG00000027855.14	ENSMUST00000199930.2	665	9	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_8	14.5666571319572	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAGTGTAGGATTCCTAT	NA	False	NA	NA	False	NA	NA	NA	102843406	102830323	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_102830387_102832516_102832576_102836564_102836639_102838943_102839012_102841520_102841578_102841922_102841967_102842124_102842198_102842859_102842982_102843301
transcript_59754.known	chr3	+	7375	5	FSM	ENSMUSG00000027854.13	ENSMUST00000029447.12	7375	5	0	0	0	0	multi-exon	FALSE	canonical	3	364	junction_4	22.0609949911603	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTGGAAACCGTGGTGT	NA	False	NA	9	True	NA	NA	NA	102903023	102915775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_102903284_102903471_102903578_102904558_102904702_102905805_102905920_102909023
transcript_59759.nic	chr3	+	542	3	ISM	ENSMUSG00000027854.13	ENSMUST00000029447.12	7375	5	5	11036	5	72	5prime_fragment	FALSE	canonical	3	384	junction_2	20	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAAATCGTGGGGTCGTTC	NA	False	NA	NA	False	AATAAA	-17	NA	102903028	102904739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_102903284_102903471_102903578_102904558
transcript_5976.known	chr1	-	1819	12	FSM	ENSMUSG00000037375.17	ENSMUST00000128619.8	1819	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	7.07457325757953	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTTGGTCATGGTATC	NA	False	NA	NA	False	NA	NA	NA	192453521	192179018	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_192179157_192235246_192235392_192277194_192277397_192343763_192343800_192376106_192376258_192399264_192399437_192408427_192408662_192409591_192409787_192423817_192423932_192431188_192431257_192441978_192442109_192453287
transcript_59763.known	chr3	+	2418	2	FSM	ENSMUSG00000027854.13	ENSMUST00000151065.2	2418	2	0	0	0	0	multi-exon	FALSE	canonical	3	401	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGGAAAGGAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	102903045	102906567	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_102904702_102905805
transcript_59764.known	chr3	+	774	3	FSM	ENSMUSG00000027854.13	ENSMUST00000119450.2	774	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	181.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATATTTGGTGTAAACCT	NA	False	NA	1	True	TATAAA	-43	NA	102903110	102909510	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_102903284_102905805_102905920_102909023
transcript_59765.known	chr3	+	4185	20	FSM	ENSMUSG00000068823.11	ENSMUST00000199420.5	4185	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	5440.27575987562	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCTAGCGCTTTCATTAT	NA	False	NA	22	True	AATAAA	-25	NA	102927928	102965502	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_102927986_102936104_102936529_102943890_102944038_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
transcript_59766.known	chr3	+	671	2	FSM	ENSMUSG00000068823.11	ENSMUST00000197844.2	671	2	0	0	0	0	multi-exon	FALSE	canonical	3	12698	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACAGTTGCAGCCTGGAA	NA	False	NA	32	True	AATAAA	-28	NA	102963369	102964448	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_102963794_102964201
transcript_59770.known	chr3	+	4470	7	FSM	ENSMUSG00000027852.15	ENSMUST00000029445.13	4470	7	0	0	0	0	multi-exon	FALSE	canonical	3	741	junction_4	34.7870505919787	1629	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCCTACTGCCATAGGG	NA	False	NA	26	True	AATAAA	-28	NA	102965600	102975230	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549
transcript_59778.known	chr3	+	831	6	FSM	ENSMUSG00000027852.15	ENSMUST00000200069.5	831	6	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_5	301.169453962383	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAAATAGACCTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	102965682	102971715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971549
transcript_59787.nnic	chr3	+	367	3	NNC	ENSMUSG00000070385.13	novel	2913	14	NA	NA	4406	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	11	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCGCGAGTGGGTTTTTCA	NA	False	NA	NA	False	AATAAA	-18	NA	103006171	103007036	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_103006247_103006341_103006453_103006855
transcript_59788.nic	chr3	+	468	2	ISM	ENSMUSG00000070385.13	ENSMUST00000177250.2	751	6	4400	-14	4400	0	3prime_fragment	FALSE	canonical	3	22	junction_1	0	97	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCGCGAGTGGGTTTTTCA	NA	False	NA	NA	False	AATAAA	-18	NA	103006165	103007036	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_103006453_103006855
transcript_59792.nnic	chr3	-	441	2	Antisense	novelGene_ENSMUSG00000007379.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	25	junction_1	0	218	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTTGTGAAAATCTACCT	NA	False	NA	NA	False	AATAAA	-18	NA	103029425	103026112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr3_-_103026360_103029231
transcript_59795.known	chr3	+	1467	7	FSM	ENSMUSG00000005687.15	ENSMUST00000005830.15	1467	7	0	0	0	0	multi-exon	FALSE	canonical	3	3472	junction_4	166.601987449797	4504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAATATGTT	4929	False	NA	NA	False	NA	NA	NA	103078970	103086468	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_103079182_103079263_103079357_103080590_103080662_103081655_103081818_103082934_103082986_103084654_103084736_103085670
transcript_59796.known	chr3	+	1405	7	FSM	ENSMUSG00000005687.15	ENSMUST00000135017.2	1405	7	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_2	1366.36225268249	649	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTTTCATTTTAATCCC	5046	False	NA	NA	False	NA	NA	NA	103079087	103086482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_103079182_103079263_103079357_103080549_103080662_103081655_103081818_103082934_103082986_103084654_103084736_103085670
transcript_59797.known	chr3	+	2717	6	FSM	ENSMUSG00000005687.15	ENSMUST00000139489.8	2717	6	0	0	0	0	multi-exon	FALSE	canonical	3	3472	junction_4	182.433111029769	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTATGTGTGGCTATAG	5023	False	NA	48	True	AATAAA	-16	NA	103079064	103086143	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_103079182_103079263_103079357_103080590_103080662_103081655_103081818_103082934_103084736_103085670
transcript_5980.known	chr1	-	408	5	FSM	ENSMUSG00000037375.17	ENSMUST00000192946.2	408	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	5.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGTGGGCAGGCGTC	NA	False	NA	NA	False	NA	NA	NA	192453300	192418718	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_192418802_192423817_192423932_192431188_192431257_192441978_192442109_192453287
transcript_59819.nnic	chr3	-	736	5	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20590	108	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0.433012701892219	71	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACAGTTATTTTGCCTTGC	NA	False	NA	-32	True	NA	NA	NA	103126881	103105433	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_103105605_103105645_103105654_103105655_103106059_103106211_103106277_103126792
transcript_5982.nnic	chr1	-	523	3	NNC	ENSMUSG00000037375.17	novel	408	5	NA	NA	-4727	243	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	1	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGCTGAGATTAAATGCTT	NA	False	NA	NA	False	AATAAA	-18	NA	192424315	192418475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_192418802_192423817_192423932_192424232
transcript_5983.known	chr1	-	2839	12	FSM	ENSMUSG00000037375.17	ENSMUST00000044190.12	2839	12	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	5.12327374676559	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACACATGTGTCTTGATAC	NA	False	NA	NA	False	AATAAA	-14	NA	192453531	192195135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_192196284_192235246_192235392_192277194_192277397_192343763_192343800_192376106_192376258_192399264_192399437_192408427_192408662_192409591_192409787_192423817_192423932_192431188_192431257_192441978_192442109_192453287
transcript_5988.nnic	chr1	-	427	4	NNC	ENSMUSG00000016200.15	novel	9274	9	NA	NA	12	-93445	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3.29983164553722	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGTGTCTGGAATCTTA	140	False	NA	NA	False	AATAAA	-42	NA	192718071	192705815	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_192705976_192709277_192709326_192713641_192713720_192717930
transcript_59883.nnic	chr3	-	739	4	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20584	119	intron_retention	TRUE	non_canonical	0	0	junction_1	12.7279220613579	31	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTTGCAATTTTATTCA	NA	False	NA	-21	True	NA	NA	NA	103126875	103105422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_103105605_103105606_103105634_103105712_103106160_103126792
transcript_5989.nnic	chr1	-	413	3	NNC	ENSMUSG00000016200.15	novel	9274	9	NA	NA	-52	-93445	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	9	67	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGTGTCTGGAATCTTA	76	False	NA	NA	False	AATAAA	-42	NA	192718135	192705815	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_192705976_192709277_192709326_192717930
transcript_59893.nnic	chr3	-	744	4	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20587	117	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	7.07106781186548	32	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCCTTGCAATTTTATT	NA	False	NA	-23	True	NA	NA	NA	103126878	103105424	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_103105605_103105760_103106001_103106074_103106313_103126792
transcript_5991.known	chr1	-	5570	12	FSM	ENSMUSG00000016181.11	ENSMUST00000085555.7	5570	12	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_4	6.18449140061635	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACACCTGGGGTGTGTGTG	NA	False	NA	NA	False	AAAACA	-7	NA	192812580	192786709	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_192790095_192796064_192796311_192796912_192797026_192797146_192797330_192799808_192800012_192800500_192800721_192802617_192803029_192804313_192804403_192805945_192806117_192810574_192810855_192811798_192811839_192812351
transcript_59913.nnic	chr3	-	629	4	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20587	4	intron_retention	TRUE	non_canonical	0	0	junction_1	7.07106781186548	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCGTCCCAGGTTTCTTC	NA	False	NA	1	True	NA	NA	NA	103126878	103105537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_103105654_103105655_103105845_103106074_103106313_103126792
transcript_59928.nnic	chr3	-	629	4	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20584	4	intron_retention	FALSE	non_canonical	0	0	junction_1	12.7279220613579	147	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCGTCCCAGGTTTCTTC	NA	False	NA	1	True	NA	NA	NA	103126875	103105537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_103105654_103105655_103106001_103106074_103106160_103126792
transcript_59930.nnic	chr3	-	635	4	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20590	4	intron_retention	TRUE	non_canonical	0	0	junction_1	0.471404520791032	41	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCGTCCCAGGTTTCTTC	NA	False	NA	1	True	NA	NA	NA	103126881	103105537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_103105654_103105655_103106001_103106191_103106277_103126792
transcript_59939.nnic	chr3	-	673	4	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20590	4	intron_retention	FALSE	non_canonical	0	0	junction_1	0.471404520791032	57	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCGTCCCAGGTTTCTTC	NA	False	NA	1	True	NA	NA	NA	103126881	103105537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_103105654_103105655_103106059_103106211_103106277_103126792
transcript_5994.known	chr1	+	4113	8	FSM	ENSMUSG00000026638.16	ENSMUST00000076521.7	4113	8	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	3.81190401832181	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATATAAAGCTAGAG	NA	False	NA	NA	False	AATAAA	-10	NA	192835418	192854331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_192835608_192839523_192839701_192843920_192844126_192844909_192845039_192848073_192848233_192849746_192850140_192850824_192850944_192851589
transcript_59940.nnic	chr3	-	634	4	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20590	4	intron_retention	TRUE	non_canonical	0	0	junction_1	0.471404520791032	40	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCGTCCCAGGTTTCTTC	NA	False	NA	1	True	NA	NA	NA	103126881	103105537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_103105654_103105655_103106059_103106250_103106277_103126792
transcript_59945.nnic	chr3	-	751	3	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20584	128	intron_retention	TRUE	non_canonical	0	0	junction_1	13.5	74	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTTATTCAGCACTTAAG	NA	False	NA	-12	True	NA	NA	NA	103126875	103105413	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_103105605_103105682_103106160_103126792
transcript_5995.known	chr1	+	2257	2	FSM	ENSMUSG00000079144.8	ENSMUST00000110831.4	2257	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTCCTGAAATCATTTG	961	False	NA	NA	False	AATAAA	-17	NA	192855887	192858608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_192856089_192856552
transcript_59954.nnic	chr3	-	549	3	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20586	4	intron_retention	FALSE	non_canonical	0	0	junction_1	40	57	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCGTCCCAGGTTTCTTC	NA	False	NA	1	True	NA	NA	NA	103126877	103105537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_103105654_103105655_103106004_103126792
transcript_59956.nnic	chr3	-	658	3	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20581	4	intron_retention	FALSE	non_canonical	0	0	junction_1	29	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCGTCCCAGGTTTCTTC	NA	False	NA	1	True	NA	NA	NA	103126872	103105537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_103105654_103105655_103106118_103126792
transcript_5996.known	chr1	+	355	3	FSM	ENSMUSG00000026639.19	ENSMUST00000193128.2	355	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTTGCTGTGGGACAATA	NA	False	NA	NA	False	NA	NA	NA	192955645	192962889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_192955737_192962530_192962584_192962678
transcript_59960.known	chr3	-	2115	1	FSM	ENSMUSG00000087119.5	ENSMUST00000117271.3	2115	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATAAAAATAAAAATA	NA	False	NA	NA	False	AATAAA	-14	NA	103553384	103551269	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_103551300_103553400
transcript_59962.nnic	chr3	-	499	3	Intergenic	novelGene_83	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAATATTGTGATGACTT	NA	False	NA	NA	False	AATAAA	-17	NA	103596393	103560873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr3_-_103561015_103572386_103572593_103596241
transcript_59963.known	chr3	-	5465	3	FSM	ENSMUSG00000027848.13	ENSMUST00000029440.10	5465	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATCTCTTTGGAGTCACT	749	False	NA	NA	False	ATTAAA	-13	NA	103645317	103638980	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_103643980_103644267_103644554_103645137
transcript_59965.known	chr3	-	2430	9	FSM	ENSMUSG00000008730.18	ENSMUST00000135634.2	2430	9	0	0	0	0	multi-exon	FALSE	canonical	2	67	junction_2	11.4884452821085	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAAAAAAAAAGTGG	NA	False	NA	NA	False	NA	NA	NA	103698591	103661472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_103661639_103665850_103666077_103667810_103667974_103668802_103668988_103670988_103671076_103671777_103671898_103676713_103676838_103684537_103685616_103698310
transcript_59966.known	chr3	-	4345	4	FSM	ENSMUSG00000027845.16	ENSMUST00000029435.15	4345	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	4.71404520791032	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGTATACTGTTTCCTT	NA	False	NA	-1	True	AATAAA	-15	NA	103716760	103707920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_103711372_103714709_103714893_103715387_103715554_103716215
transcript_59968.known	chr3	-	4113	3	FSM	ENSMUSG00000027845.16	ENSMUST00000063502.13	4113	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	24.5	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGTATACTGTTTCCTT	NA	False	NA	-1	True	AATAAA	-15	NA	103716694	103707920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_103711372_103714709_103714893_103716215
transcript_59970.nnic	chr3	+	2880	11	NNC	ENSMUSG00000032952.12	novel	2799	10	NA	NA	-53	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	22.1099525101254	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGCCTGTCGTCACTT	NA	False	NA	17	True	ATTAAA	-21	NA	103716782	103729341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_103717104_103717183_103717374_103719400_103719626_103720092_103720224_103720575_103720724_103722140_103722638_103725075_103725160_103726119_103726224_103727569_103727778_103727993_103728276_103728651
transcript_59973.known	chr3	+	2799	10	FSM	ENSMUSG00000032952.12	ENSMUST00000047285.7	2799	10	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_7	8.73053390247253	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGCCTGTCGTCACTT	NA	False	NA	17	True	ATTAAA	-21	NA	103716943	103729341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_103717374_103719400_103719626_103720092_103720224_103720575_103720724_103722140_103722638_103725075_103725160_103726119_103726224_103727569_103727778_103727993_103728276_103728651
transcript_59977.known	chr3	+	2743	21	FSM	ENSMUSG00000027843.14	ENSMUST00000029433.9	2743	21	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.66332495807108	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTATGCTTCAAAGTGTAT	NA	False	NA	NA	False	AATAAA	-13	NA	103767592	103819563	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_103767807_103780960_103781070_103781296_103781374_103781495_103781592_103781980_103782020_103783048_103783121_103783221_103783282_103783910_103784054_103784620_103784688_103786893_103786972_103789365_103789453_103792637_103792715_103792842_103793658_103795827_103795912_103796050_103796173_103797571_103797600_103809429_103809508_103810685_103810802_103812471_103812503_103816696_103816775_103819291
transcript_59979.nic	chr3	+	2109	12	ISM	ENSMUSG00000058388.15	ENSMUST00000090685.11	3006	18	20205	0	-7769	0	3prime_fragment	FALSE	canonical	3	60	junction_6	13.8504408140608	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGTTTCTAGGCTTTTT	8705	False	NA	8	True	AATAAA	-18	NA	103895966	103914806	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_103896091_103898353_103898528_103898635_103898723_103900996_103901219_103903917_103904047_103904748_103905022_103905987_103906120_103906586_103906674_103910762_103910919_103911702_103911799_103912814_103912941_103914303
transcript_59980.nic	chr3	+	677	2	ISM	ENSMUSG00000044098.15	ENSMUST00000151927.4	3649	8	-20	35451	-20	-31716	5prime_fragment	FALSE	canonical	3	60	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAGAAACATCGAGAAG	NA	False	NA	NA	False	AATAAA	-10	NA	103821862	103835736	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_103822470_103835666
transcript_59981.known	chr3	+	4426	5	FSM	ENSMUSG00000032902.2	ENSMUST00000046212.2	4426	5	0	0	0	0	multi-exon	FALSE	canonical	3	470	junction_2	50.2462685181696	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATAATATTACTTGTATAT	NA	False	NA	NA	False	NA	NA	NA	104545983	104565778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_104546145_104556573_104556834_104558201_104558346_104560057_104560904_104562763
transcript_59984.nnic	chr3	+	1680	10	NNC	ENSMUSG00000002228.8	novel	1721	10	NA	NA	-10	0	at_least_one_novel_splicesite	TRUE	canonical	3	23	junction_8	22.6949714341098	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTGTGTCATTATTTGC	NA	False	NA	NA	False	AATAAA	-14	NA	104688361	104693334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_104688726_104689916_104690038_104690442_104690731_104690969_104691083_104691358_104691444_104691949_104692069_104692271_104692336_104692501_104692559_104692713_104692866_104693017
transcript_59986.known	chr3	+	1721	10	FSM	ENSMUSG00000002228.8	ENSMUST00000002298.7	1721	10	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	13.4200881305638	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTGTGTCATTATTTGC	NA	False	NA	NA	False	AATAAA	-14	NA	104688371	104693334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_104688726_104689916_104690038_104690442_104690731_104690969_104691083_104691358_104691444_104691949_104692069_104692271_104692336_104692501_104692610_104692713_104692866_104693017
transcript_59990.nnic	chr3	+	1571	10	NNC	ENSMUSG00000002228.8	novel	1721	10	NA	NA	1266	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	25.0796262795319	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTGTGTCATTATTTGC	NA	False	NA	NA	False	AATAAA	-14	NA	104689637	104693334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_104689842_104689916_104690038_104690442_104690731_104690969_104691083_104691358_104691444_104691949_104692069_104692271_104692336_104692501_104692610_104692713_104692866_104693017
transcript_59991.nic	chr3	+	1883	9	ISM	ENSMUSG00000002228.8	ENSMUST00000002298.7	1721	10	-10	0	-10	0	intron_retention	FALSE	canonical	3	56	junction_1	13.9977676791694	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTGTGTCATTATTTGC	NA	False	NA	NA	False	AATAAA	-14	NA	104688361	104693334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_104688726_104689916_104690038_104690442_104690731_104690969_104691083_104691358_104691444_104691949_104692069_104692271_104692336_104692501_104692610_104692713
transcript_59995.known	chr3	+	410	1	FSM	ENSMUSG00000002228.8	ENSMUST00000197264.2	410	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTGTGTCATTATTTGC	NA	False	NA	NA	False	AATAAA	-14	NA	104692924	104693334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_104692900_104693300
transcript_59996.nnic	chr3	+	1213	6	NNC	ENSMUSG00000002233.14	novel	1202	5	NA	NA	-53	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	108.939249125373	592	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCAGCTTCCTGTCTTT	NA	False	NA	13	True	AATAAA	-20	NA	104696296	104701775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_104696400_104698799_104698904_104699204_104699369_104699880_104700002_104700215_104700347_104701185
transcript_59999.known	chr3	-	3460	21	FSM	ENSMUSG00000002227.16	ENSMUST00000168015.8	3460	21	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_20	265.434944948852	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCCTCTTGCGTGTGTC	NA	False	NA	-25	True	AAGAAA	-21	NA	104725621	104702151	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251_104725473_104725573
transcript_6.known	ERCC-00009	+	968	1	FSM	ERCC-00009A	DQ668364	968	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4376	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	968	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00009_+_0_1000
transcript_60.known	ERCC-00126	+	1111	1	FSM	ERCC-00126A	DQ459427	1111	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00126_+_0_1100
transcript_60000.nic	chr3	-	3610	20	ISM	ENSMUSG00000002227.16	ENSMUST00000168015.8	3460	21	-49	0	-49	0	intron_retention	FALSE	canonical	3	1102	junction_11	86.7727314610285	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCCTCTTGCGTGTGTC	NA	False	NA	-25	True	AAGAAA	-21	NA	104725670	104702151	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251
transcript_60002.known	chr3	-	3498	20	FSM	ENSMUSG00000002227.16	ENSMUST00000002297.12	3498	20	0	0	0	0	multi-exon	TRUE	canonical	2	35	junction_17	294.113899959836	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCCTCTTGCGTGTGTC	NA	False	NA	-25	True	AAGAAA	-21	NA	104725558	104702151	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711702_104711786_104712030_104712219_104712424_104725251
transcript_60008.known	chr3	+	5728	14	FSM	ENSMUSG00000045576.17	ENSMUST00000059271.13	5728	14	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_11	6.94526359402813	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATTTGTCCTGCTTCTTA	80	False	NA	NA	False	AGTAAA	-12	NA	104771818	104837380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_104772625_104775339_104775423_104778161_104778328_104780837_104780893_104782142_104782259_104790108_104790188_104796601_104796757_104798779_104798878_104799512_104799628_104801682_104801756_104803011_104803115_104826666_104826818_104829502_104829596_104833745
transcript_60010.known	chr3	+	2428	14	FSM	ENSMUSG00000045576.17	ENSMUST00000106769.8	2428	14	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_11	18.8082821993382	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACTAGTGTATTTTCTTT	80	False	NA	29	True	AATACA	-40	NA	104771818	104834176	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_104772625_104775339_104775423_104778161_104778328_104780837_104780893_104782142_104782259_104790108_104790188_104796601_104796757_104798779_104798878_104799512_104799628_104801682_104801756_104803011_104803115_104826762_104826818_104829502_104829596_104833745
transcript_60011.known	chr3	+	3256	14	FSM	ENSMUSG00000045576.17	ENSMUST00000183914.8	3256	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	19.4969273865087	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATATTTAATTTGTATGGA	648	False	NA	NA	False	AATAAA	-14	NA	104772386	104835210	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_104772891_104775339_104775423_104778161_104778328_104780837_104780893_104782142_104782259_104790108_104790188_104796601_104796757_104798779_104798878_104799512_104799628_104801682_104801756_104803011_104803115_104826666_104826818_104829502_104829596_104833745
transcript_60018.nnic	chr3	-	1976	10	NNC	ENSMUSG00000070372.12	novel	3193	10	NA	NA	-520	-154	at_least_one_novel_splicesite	FALSE	canonical	1	28	junction_1	502.139963764961	57	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTGTCCTTTCTGTC	8653	False	NA	-11	True	AATACA	-18	NA	104772341	104730248	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_104730858_104732722_104732786_104735842_104735915_104741413_104741493_104742040_104742121_104747097_104747305_104748143_104748208_104749976_104750029_104752233_104752298_104771655
transcript_6002.known	chr1	-	1355	7	FSM	ENSMUSG00000016194.15	ENSMUST00000161737.8	1355	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.10554159678513	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGTAACTATGAATGGAGT	NA	False	NA	NA	False	AATAAA	-28	NA	192946383	192903996	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_192904537_192905929_192906074_192922538_192922725_192922834_192922947_192923639_192923771_192924482_192924597_192946255
transcript_60020.known	chr3	-	3193	10	FSM	ENSMUSG00000070372.12	ENSMUST00000094028.10	3193	10	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_2	396.900211360208	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTCCTTCCTGAGTGTGA	9173	False	NA	NA	False	AGTAAA	-22	NA	104771821	104730094	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_104732441_104732722_104732786_104735842_104735915_104741413_104741493_104742040_104742121_104747097_104747305_104748143_104748208_104749976_104750029_104752233_104752298_104771655
transcript_60026.nic	chr3	+	1123	5	ISM	ENSMUSG00000045576.17	ENSMUST00000106769.8	2428	14	550	51471	-14	-7525	5prime_fragment	FALSE	canonical	3	61	junction_3	4.76313972081441	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAATTTCAGAGCCTGGT	630	False	NA	NA	False	AATAAA	-31	NA	104772368	104782705	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_104772625_104775339_104775423_104778161_104778328_104780837_104780893_104782142
transcript_60028.nic	chr3	-	1213	4	ISM	ENSMUSG00000070372.12	ENSMUST00000195912.2	360	6	-686	6404	-581	-654	5prime_fragment	FALSE	canonical	3	1298	junction_3	99.5199589138893	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAAATCTTCTTTCTGG	8592	False	NA	NA	False	NA	NA	NA	104772402	104747857	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_-_104748208_104749976_104750029_104752233_104752298_104771655
transcript_60029.known	chr3	+	2455	1	FSM	ENSMUSG00000045576.17	ENSMUST00000199186.2	2455	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGTCATTTATTTTTCT	NA	False	NA	NA	False	ATTAAA	-14	NA	104771320	104773775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_104771300_104773800
transcript_6003.known	chr1	-	1623	6	FSM	ENSMUSG00000016194.15	ENSMUST00000016338.15	1623	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.01980390271856	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTCTCGCATTCATTT	NA	False	NA	NA	False	NA	NA	NA	192924937	192903941	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_192904537_192905929_192906074_192922538_192922725_192922834_192922947_192923639_192923771_192924482
transcript_60030.known	chr3	-	2905	11	FSM	ENSMUSG00000027905.16	ENSMUST00000090680.11	2905	11	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_2	22.5302019520465	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGTTTATTCTGTCGAG	NA	False	NA	0	True	AATAAA	-23	NA	105594890	105585585	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_105587029_105587659_105587762_105587865_105587972_105588296_105588380_105590041_105590101_105590192_105590332_105590468_105590612_105590731_105590847_105591600_105591770_105593954_105594050_105594439
transcript_60032.nnic	chr3	-	699	3	NNC	ENSMUSG00000027905.16	novel	2905	11	NA	NA	-8	-3424	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	173	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAACCCACT	NA	False	NA	NA	False	NA	NA	NA	105594776	105592228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_105592496_105593954_105594050_105594439
transcript_60033.known	chr3	+	4701	2	FSM	ENSMUSG00000048458.9	ENSMUST00000066610.8	4701	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGGTGGTCTGCTGAAA	NA	False	NA	NA	False	AATAAA	-17	NA	105611914	105628158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_105612142_105623684
transcript_60036.known	chr3	-	2407	8	FSM	ENSMUSG00000068798.11	ENSMUST00000090678.11	2407	8	0	0	0	0	multi-exon	TRUE	canonical	3	409	junction_7	23.7667234354495	693	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTCCCTTCTCTTTAT	NA	False	NA	-18	True	AATAAA	-12	NA	105708652	105634582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_105636281_105639271_105639388_105645070_105645215_105646829_105646971_105648661_105648719_105653219_105653289_105657560_105657645_105708554
transcript_60037.known	chr3	-	1377	8	FSM	ENSMUSG00000068798.11	ENSMUST00000199969.5	1377	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	204.885134568975	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATGGATGATTAAATTTT	NA	False	NA	40	True	ATTAAA	-9	NA	105657644	105635629	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_105636281_105639271_105639388_105642380_105642496_105645070_105645215_105646829_105646971_105648661_105648719_105653219_105653289_105657560
transcript_60041.known	chr3	+	3682	10	FSM	ENSMUSG00000000561.15	ENSMUST00000010278.12	3682	10	0	0	0	0	multi-exon	FALSE	canonical	3	910	junction_4	50.9162953856864	1034	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAAATTGCTTTTGTTGTT	NA	False	NA	12	True	AATAAA	-31	NA	105866684	105877076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873190_105873672_105873742_105874478
transcript_60044.known	chr3	+	4286	9	FSM	ENSMUSG00000000561.15	ENSMUST00000130994.8	4286	9	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	323.092067954322	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAAAAAGGGACTTCATG	NA	False	NA	NA	False	NA	NA	NA	105866829	105877353	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_105867004_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873742_105874478
transcript_60045.known	chr3	+	1095	8	FSM	ENSMUSG00000000561.15	ENSMUST00000127464.8	1095	8	0	0	0	0	multi-exon	FALSE	canonical	3	910	junction_4	52.8737425671876	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCCTGTGAGTCTGAGTA	NA	False	NA	NA	False	AATATA	-16	NA	105866823	105873408	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080
transcript_6006.known	chr1	-	871	2	FSM	ENSMUSG00000009633.4	ENSMUST00000009777.4	871	2	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	0	826	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCATTATTTAATTCTTG	NA	False	NA	-1	True	AATAAA	-16	NA	192955525	192954468	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_192955111_192955296
transcript_60065.known	chr3	-	2527	3	FSM	ENSMUSG00000000563.18	ENSMUST00000153666.2	2527	3	0	0	0	0	multi-exon	FALSE	canonical	3	4727	junction_2	168.5	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAATAAAAGAAAAAAACCTA	NA	False	NA	NA	False	GATAAA	-23	NA	105866580	105860984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_105863358_105866177_105866215_105866463
transcript_60066.known	chr3	-	407	2	FSM	ENSMUSG00000000563.18	ENSMUST00000123959.2	407	2	0	0	0	0	multi-exon	FALSE	canonical	3	4727	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCAGATTTCCATCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	105866562	105865906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_105866215_105866463
transcript_60067.known	chr3	-	899	6	FSM	ENSMUSG00000010136.15	ENSMUST00000066319.8	899	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.2	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGTTCCTACTCTGTCT	NA	False	NA	NA	False	CATAAA	-10	NA	105908813	105904281	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_105904516_105905587_105905706_105906843_105906975_105907687_105907787_105908413_105908560_105908642
transcript_60069.known	chr3	+	429	1	FSM	ENSMUSG00000092072.4	ENSMUST00000170669.4	429	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12804	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTATTATTTATTCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	105941979	105942408	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_105942000_105942400
transcript_6007.known	chr1	-	2112	2	FSM	ENSMUSG00000097850.3	ENSMUST00000180420.3	2112	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACGCCCTCCTGCCTCTCT	9120	False	NA	NA	False	ATTAAA	-17	NA	193192482	193189545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_193191208_193192032
transcript_60070.known	chr3	+	4050	12	FSM	ENSMUSG00000027901.13	ENSMUST00000029508.11	4050	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1.52662323852242	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCACATTATCTGCATGCT	NA	False	NA	NA	False	AATAAA	-16	NA	106389746	106410346	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_106390030_106394188_106394365_106395166_106395280_106395887_106395958_106397650_106397729_106398541_106398683_106399744_106399894_106402146_106402325_106406133_106406176_106406536_106406622_106407070_106407311_106407851
transcript_6008.known	chr1	+	2454	8	FSM	ENSMUSG00000016494.10	ENSMUST00000016638.8	2454	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.35526185435788	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGATGTGGCCCTATAATG	1021	False	NA	NA	False	AATAAA	-43	NA	194621126	194643587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_194621353_194630146_194630315_194631612_194631873_194633246_194633328_194640724_194640882_194641117_194641171_194641373_194641539_194642243
transcript_60084.known	chr3	+	3271	9	FSM	ENSMUSG00000027900.16	ENSMUST00000067630.13	3271	9	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_2	15.9251177389682	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATTGGTAAGTTTTAATT	NA	False	NA	NA	False	ATTAAA	-20	NA	106455113	106483206	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_106455237_106459471_106459597_106462479_106462625_106469064_106469133_106473360_106473501_106478008_106478187_106478926_106479010_106480288_106480382_106480890
transcript_6009.known	chr1	-	256	2	FSM	ENSMUSG00000104077.2	ENSMUST00000194642.2	256	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCCCTCTTGCCTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	194700550	194700199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_194700411_194700505
transcript_60100.known	chr3	-	2814	9	FSM	ENSMUSG00000040774.16	ENSMUST00000068301.11	2814	9	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_8	25.7924407530579	635	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGTTTTCATCACAGAGG	NA	False	NA	NA	False	AATAAA	-15	NA	106455118	106409575	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_106411061_106411841_106411968_106412465_106412625_106413036_106413169_106420118_106420204_106438452_106438595_106440670_106440819_106446505_106446920_106454995
transcript_60102.known	chr3	-	2020	9	FSM	ENSMUSG00000040774.16	ENSMUST00000039153.14	2020	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	105.137930239281	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTTTTTTCTCAATTTT	NA	False	NA	-5	True	AATAAA	-16	NA	106455047	106410298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_106411061_106411841_106411968_106412465_106412625_106413036_106413169_106427324_106427410_106438452_106438595_106440670_106440819_106446505_106446920_106454995
transcript_60112.known	chr3	+	2035	8	FSM	ENSMUSG00000027900.16	ENSMUST00000121034.8	2035	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	45.9937884004848	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTCTTGTCATGAAAATGA	NA	False	NA	NA	False	AATAAA	-14	NA	106455179	106482161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_106455237_106462479_106462625_106469064_106469133_106473360_106473501_106478008_106478187_106478926_106479010_106480288_106480382_106480890
transcript_60118.known	chr3	+	1891	7	FSM	ENSMUSG00000027900.16	ENSMUST00000029507.13	1891	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	45.7298832517887	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTCTTGTCATGAAAATGA	NA	False	NA	NA	False	AATAAA	-14	NA	106455187	106482161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_106455237_106459471_106459597_106462479_106462625_106469064_106469133_106473360_106473501_106480288_106480382_106480890
transcript_6012.known	chr1	-	2776	10	FSM	ENSMUSG00000016481.16	ENSMUST00000193094.6	2776	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	85.5112439361408	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAACCCACA	NA	False	NA	NA	False	NA	NA	NA	194813652	194779689	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_194781150_194789125_194789231_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813495
transcript_60131.known	chr3	-	2121	9	FSM	ENSMUSG00000040774.16	ENSMUST00000121231.8	2121	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	80.7074191137345	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTTTTTTCTCAATTTT	NA	False	NA	-5	True	AATAAA	-16	NA	106454898	106410298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_106411061_106411841_106411968_106412465_106412625_106413036_106413169_106420118_106420204_106438452_106438595_106440670_106440819_106446505_106446913_106454738
transcript_60132.known	chr3	+	855	7	FSM	ENSMUSG00000027900.16	ENSMUST00000132923.8	855	7	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	55.1412328077234	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGAGTAAGTGCACTTAG	NA	False	NA	NA	False	NA	NA	NA	106455192	106478164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_106455237_106457814_106457992_106459471_106459597_106462479_106462625_106469064_106469133_106473360_106473501_106478008
transcript_60135.known	chr3	+	3103	4	FSM	ENSMUSG00000056260.16	ENSMUST00000098750.5	3103	4	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	11.8415464455544	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGATGTATGGCTTTGTTT	NA	False	NA	28	True	AATAAA	-40	NA	106629251	106643890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_106629423_106638978_106640459_106641673_106641956_106642720
transcript_60136.known	chr3	+	929	3	FSM	ENSMUSG00000056260.16	ENSMUST00000098751.10	929	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	16.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCCCCACTGGATGCCTGA	NA	False	NA	NA	False	NA	NA	NA	106592302	106643220	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_106592450_106641673_106641956_106642720
transcript_60137.nnic	chr3	+	1626	3	NIC	ENSMUSG00000056260.16	novel	674	2	NA	NA	-46	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	19.5	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTATGGCTTTGTTTTGT	NA	False	NA	31	True	AATAAA	-43	NA	106628997	106643893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_+_106629169_106641673_106641956_106642720
transcript_60138.known	chr3	+	1669	3	FSM	ENSMUSG00000056260.16	ENSMUST00000106736.3	1669	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	9.5	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTATGGCTTTGTTTTGT	NA	False	NA	31	True	AATAAA	-43	NA	106629208	106643893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_106629423_106641673_106641956_106642720
transcript_60140.nic	chr3	+	583	2	ISM	ENSMUSG00000056260.16	ENSMUST00000106736.3	1669	3	-95	1946	70	13	5prime_fragment	FALSE	canonical	3	21	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAGGTAACAGTTTTT	NA	False	NA	NA	False	AAGAAA	-8	NA	106629113	106641947	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_106629423_106641673
transcript_60144.known	chr3	+	743	4	FSM	ENSMUSG00000087260.6	ENSMUST00000199317.2	743	4	0	0	0	0	multi-exon	FALSE	canonical	3	1062	junction_2	64.8194072447099	14476	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGGTTCATTTCTGGTCT	3151	False	NA	12	True	AATAAA	-16	NA	107186314	107191398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_107186430_107187185_107187248_107189224_107189343_107190950
transcript_60152.known	chr3	+	2531	6	FSM	ENSMUSG00000027896.16	ENSMUST00000153322.2	2531	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGAATAGAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	107198609	107209869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_107198732_107199723_107199842_107205260_107205394_107206151_107206296_107206435_107206598_107208017
transcript_60153.known	chr3	+	2248	9	FSM	ENSMUSG00000027896.16	ENSMUST00000029502.14	2248	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTATTTGATCGTTTGAA	NA	False	NA	NA	False	AATAAA	-21	NA	107198545	107219431	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_107198732_107199723_107199842_107205260_107205394_107206151_107206296_107206435_107206598_107208017_107208537_107210376_107210589_107211726_107211821_107218751
transcript_60155.known	chr3	-	4343	2	FSM	ENSMUSG00000048109.11	ENSMUST00000061772.11	4343	2	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGAGGAGCTCCTCCGT	NA	False	NA	NA	False	AATAAA	-14	NA	107240989	107232736	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_107233621_107237530
transcript_60156.nnic	chr3	-	988	2	NNC	ENSMUSG00000048109.11	novel	4343	2	NA	NA	-9	-520	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	0	72	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTCTGCCTGGAAGTG	NA	False	NA	-5	True	AATAAA	-20	NA	107240426	107233256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_107233621_107239802
transcript_60158.known	chr3	-	3215	21	FSM	ENSMUSG00000014601.14	ENSMUST00000064759.7	3215	21	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_2	23.6893963620857	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTGCCTTGTGTGTAGA	NA	False	NA	-1	True	ATTAAA	-17	NA	107539010	107519847	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_107520783_107521910_107522116_107522630_107522736_107523076_107523144_107523823_107523925_107524127_107524255_107525373_107525472_107525631_107525707_107526226_107526299_107527355_107527420_107527524_107527591_107528642_107528861_107529187_107529371_107531702_107531831_107531940_107532048_107532996_107533066_107534051_107534173_107534260_107534396_107534703_107534779_107535471_107535542_107538816
transcript_60160.known	chr3	-	3863	17	FSM	ENSMUSG00000027893.15	ENSMUST00000029490.15	3863	17	0	0	0	0	multi-exon	FALSE	canonical	3	702	junction_5	41.8762593094226	165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTAGTCGTGTGTCTTT	NA	False	NA	-4	True	ATTAAA	-23	NA	107603876	107570435	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_107572430_107572831_107572953_107574457_107574537_107574955_107575025_107575382_107575482_107575565_107575661_107575982_107576054_107576408_107576498_107577207_107577272_107577519_107577637_107578453_107578561_107579357_107579453_107580751_107580855_107581323_107581425_107582326_107582471_107585035_107585148_107603473
transcript_60163.known	chr3	+	869	8	FSM	ENSMUSG00000004032.11	ENSMUST00000167523.8	869	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	17.3980998258724	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCCCTGAGGGGCCCACA	NA	False	NA	NA	False	NA	NA	NA	107803151	107805891	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_107803315_107803613_107803690_107803941_107804007_107804553_107804686_107804777_107804879_107805282_107805379_107805481_107805593_107805766
transcript_60164.known	chr3	+	945	8	FSM	ENSMUSG00000004032.11	ENSMUST00000004134.11	945	8	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	3.52252228741084	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGTCTAGATGGATTTC	NA	False	NA	11	True	AATAAA	-16	NA	107803136	107806002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_107803315_107803613_107803690_107803941_107804007_107804603_107804686_107804777_107804879_107805282_107805379_107805481_107805593_107805766
transcript_60168.known	chr3	+	1083	8	FSM	ENSMUSG00000004032.11	ENSMUST00000170058.8	1083	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	18.0305862582537	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGTCTAGATGGATTTC	NA	False	NA	11	True	AATAAA	-16	NA	107803161	107806002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_107803315_107803613_107803853_107803941_107804007_107804603_107804686_107804777_107804879_107805282_107805379_107805481_107805593_107805766
transcript_60170.known	chr3	-	359	4	FSM	ENSMUSG00000086968.9	ENSMUST00000135512.3	359	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGCCAAGGAGTGGACCAA	NA	False	NA	NA	False	NA	NA	NA	107803079	107800818	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_107800824_107801366_107801532_107801904_107801973_107802958
transcript_60171.known	chr3	+	810	7	FSM	ENSMUSG00000004032.11	ENSMUST00000169365.2	810	7	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	3.54338193757822	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTAACTGGTGTCTAGA	NA	False	NA	3	True	AATAAA	-8	NA	107803562	107805994	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_107803690_107803941_107804007_107804603_107804686_107804777_107804879_107805282_107805379_107805481_107805593_107805766
transcript_60172.known	chr3	-	1377	8	FSM	ENSMUSG00000004035.13	ENSMUST00000004137.11	1377	8	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_6	2.49897938350513	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGTTTTTCTTTGGTCGG	NA	False	NA	-7	True	NA	NA	NA	107839133	107833649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_107834297_107836185_107836297_107836378_107836475_107837589_107837691_107837788_107837871_107838143_107838209_107838630_107838707_107838934
transcript_60177.nnic	chr3	-	1190	9	Fusion	ENSMUSG00000089664.3_ENSMUSG00000068762.12	novel	1153	8	NA	NA	-357	0	multi-exon	FALSE	canonical	3	14	junction_7	13.2452821789496	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCCTGTCGTATT	7880	False	NA	-1	True	AGTAAA	-16	NA	107860794	107846162	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr3_-_107846633_107848308_107848420_107848504_107848601_107849448_107849550_107849648_107849731_107850017_107850083_107850560_107850637_107860362_107860439_107860681
transcript_60180.known	chr3	-	1153	8	FSM	ENSMUSG00000068762.12	ENSMUST00000106685.9	1153	8	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_3	8.51649060616507	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCCTGTCGTATT	1790	False	NA	-1	True	AGTAAA	-16	NA	107851065	107846162	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_107846633_107848308_107848420_107848504_107848601_107849448_107849550_107849648_107849731_107850017_107850083_107850560_107850637_107850913
transcript_60194.known	chr3	-	1311	8	FSM	ENSMUSG00000004038.10	ENSMUST00000004136.10	1311	8	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_5	50.6947648547014	622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTCTTTTTCTTTTGC	NA	False	NA	0	True	AATAAA	-20	NA	107876599	107871011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_107871613_107873402_107873514_107873594_107873691_107874890_107874992_107875081_107875164_107875451_107875517_107876078_107876155_107876420
transcript_60199.nnic	chr3	-	1147	7	NIC	ENSMUSG00000004038.10	novel	1311	8	NA	NA	82	0	combination_of_known_splicesites	FALSE	canonical	3	37	junction_4	86.6033422501054	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTCTTTTTCTTTTGC	NA	False	NA	0	True	AATAAA	-20	NA	107876517	107871011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_-_107871613_107873402_107873514_107873594_107873691_107874890_107874992_107875451_107875517_107876078_107876155_107876420
transcript_60203.nnic	chr3	-	1042	6	NIC	ENSMUSG00000004038.10	novel	1311	8	NA	NA	86	0	combination_of_known_splicesites	FALSE	canonical	3	50	junction_3	88.3388929068052	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTCTTTTTCTTTTGC	NA	False	NA	0	True	AATAAA	-20	NA	107876513	107871011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_-_107871613_107873402_107873514_107873594_107873691_107875451_107875517_107876078_107876155_107876420
transcript_60214.known	chr3	-	1064	8	FSM	ENSMUSG00000040562.13	ENSMUST00000012348.9	1064	8	0	0	0	0	multi-exon	FALSE	canonical	3	626	junction_6	40.3692143766479	2898	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTCAGTGTATTATTTT	2042	False	NA	-4	True	AATAAA	-13	NA	107893769	107889017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_107889455_107891251_107891363_107891444_107891541_107892364_107892466_107892562_107892645_107892933_107892999_107893349_107893426_107893673
transcript_60242.known	chr3	-	1289	8	FSM	ENSMUSG00000058135.13	ENSMUST00000004140.11	1289	8	0	0	0	0	multi-exon	FALSE	canonical	3	592	junction_3	56.1666616201374	3329	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGAGTTGTGTCTTTTTCT	6583	False	NA	-4	True	AATAAA	-18	NA	107925289	107919570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_107920095_107922068_107922180_107922260_107922357_107923643_107923745_107923834_107923917_107924199_107924265_107924666_107924743_107925055
transcript_60244.known	chr3	-	1707	8	FSM	ENSMUSG00000027890.18	ENSMUST00000029489.15	1707	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_7	25.3175747621437	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGATGTCTTTTCCTAC	NA	False	NA	-4	True	AATAAA	-20	NA	107952210	107947723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_107948642_107949451_107949563_107949642_107949739_107950639_107950741_107950835_107950918_107951210_107951276_107951668_107951745_107951952
transcript_60245.known	chr3	-	777	8	FSM	ENSMUSG00000027890.18	ENSMUST00000106670.2	777	8	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_7	31.2429583903252	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTCAAAGGTCCTCTTT	NA	False	NA	NA	False	NA	NA	NA	107952182	107948452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_107948642_107949451_107949563_107949642_107949739_107950639_107950741_107950835_107950918_107951210_107951276_107951668_107951745_107952125
transcript_60246.known	chr3	-	1462	8	FSM	ENSMUSG00000027890.18	ENSMUST00000178808.8	1462	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_7	32.937169624258	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTCAGATGTCTTTTCCT	NA	False	NA	-6	True	AATAAA	-18	NA	107952175	107947725	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_107948642_107949451_107949563_107949642_107949739_107950639_107950741_107950835_107950918_107951210_107951276_107951668_107951745_107952160
transcript_60251.known	chr3	-	3650	18	FSM	ENSMUSG00000027889.18	ENSMUST00000102638.8	3650	18	0	0	0	0	multi-exon	TRUE	canonical	3	198	junction_12	21.7907634157735	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGCATGTGAAGGTGTCT	NA	False	NA	-6	True	AATAAA	-17	NA	107993943	107981377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_107982438_107982564_107982676_107982846_107983021_107983286_107983408_107983673_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995_107986126_107986302_107986393_107986500_107986643_107986902_107987090_107987378_107987491_107987582_107987652_107987959_107988091_107988316_107988448_107993533
transcript_60254.known	chr3	-	600	2	FSM	ENSMUSG00000027889.18	ENSMUST00000106667.2	600	2	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCATTATTGTCTCGGC	3651	False	NA	NA	False	NA	NA	NA	107982786	107982059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_107982438_107982564
transcript_60256.nnic	chr3	+	1904	9	Fusion	ENSMUSG00000009108.16_ENSMUSG00000056411.3	novel	2518	7	NA	NA	759	0	multi-exon	FALSE	canonical	2	2	junction_7	1.61535599791501	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCTGGGTTCCCTGTTTC	NA	False	NA	NA	False	ATTAAA	-20	NA	107994050	108008746	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr3_+_107994208_108000509_108000683_108002456_108002500_108002754_108002897_108003665_108003824_108005282_108005412_108005626_108005757_108007303_108007458_108007928
transcript_60258.known	chr3	-	3262	9	FSM	ENSMUSG00000000001.5	ENSMUST00000000001.5	3262	9	0	0	0	0	multi-exon	FALSE	canonical	3	376	junction_4	42.0652395095998	457	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCACTTTTATTTGTCTTG	NA	False	NA	-10	True	ATTAAA	-32	NA	108053462	108014595	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_108016633_108016718_108016929_108019250_108019405_108019788_108019919_108023078_108023208_108025616_108025775_108030857_108031000_108031110_108031154_108053203
transcript_60261.known	chr3	-	4275	3	FSM	ENSMUSG00000048796.8	ENSMUST00000106655.2	4275	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAGGACCCAAGTCTCAG	NA	False	NA	84	True	AATAAA	-18	NA	108108150	108103002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_108107032_108107440_108107479_108107942
transcript_60262.known	chr3	-	4058	3	FSM	ENSMUSG00000048796.8	ENSMUST00000065664.7	4058	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTATGCTCTGTCCTTTTC	NA	False	NA	0	True	ATTAAA	-16	NA	108108150	108103086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_108107032_108107440_108107479_108108075
transcript_60263.known	chr3	-	3044	12	FSM	ENSMUSG00000048997.18	ENSMUST00000102633.9	3044	12	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_11	14.3354153142281	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTGTCTCCCTGTTCTGTT	2934	False	NA	NA	False	AAGAAA	-28	NA	108118250	108109537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_108109690_108110563_108111360_108111816_108111939_108112031_108112231_108112947_108113202_108113541_108113625_108114138_108114426_108114709_108114921_108115278_108115384_108115755_108115822_108116232_108116412_108117660
transcript_60264.known	chr3	-	2321	11	FSM	ENSMUSG00000048997.18	ENSMUST00000117409.8	2321	11	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_7	12.8124939024376	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTGTCTCCCTGTTCTGTT	3382	False	NA	NA	False	AAGAAA	-28	NA	108117802	108109537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_108109690_108110563_108111360_108111816_108111939_108112031_108112231_108112947_108113202_108113541_108113625_108114138_108114330_108114709_108114921_108115278_108115384_108115755_108115822_108117660
transcript_60265.known	chr3	-	2387	11	FSM	ENSMUSG00000048997.18	ENSMUST00000117784.8	2387	11	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_7	7.33212111192934	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAAGACTGTCTCCCTGT	3406	False	NA	NA	False	AAGAAA	-22	NA	108117778	108109543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_108109690_108110563_108111360_108111816_108111939_108112031_108112231_108112947_108113202_108113541_108113625_108114138_108114426_108114709_108114921_108115278_108115384_108115755_108115822_108117660
transcript_60267.nnic	chr3	+	1507	3	NNC	ENSMUSG00000105961.2	novel	1027	3	NA	NA	9084	437	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108143186	108148000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_108143301_108145985_108146078_108146699
transcript_60271.known	chr3	-	2439	3	FSM	ENSMUSG00000074281.4	ENSMUST00000142833.2	2439	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTGTTTCTCACCCTGC	NA	False	NA	NA	False	AATAAA	-26	NA	108291057	108286592	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_108288251_108289786_108290113_108290602
transcript_60275.known	chr3	+	1686	8	FSM	ENSMUSG00000068744.13	ENSMUST00000090561.10	1686	8	0	0	0	0	multi-exon	FALSE	canonical	3	329	junction_1	57.4402973103556	801	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATCTGAAAGTAGATTTT	7032	False	NA	16	True	AATAAA	-24	NA	108291154	108295495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_108291243_108291551_108291602_108291689_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
transcript_6028.known	chr1	-	1651	10	FSM	ENSMUSG00000016481.16	ENSMUST00000075451.12	1651	10	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_9	54.0893179933677	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGTGTGGTTCATACTT	NA	False	NA	-1	True	AATAAA	-19	NA	194813869	194786097	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_194786216_194789125_194789231_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813495
transcript_6030.nnic	chr1	-	1378	10	NNC	ENSMUSG00000016481.16	novel	1651	10	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_9	77.6737399417796	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGTGTGGTTCATACTT	NA	False	NA	-1	True	AATAAA	-19	NA	194813868	194786097	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_194786216_194789125_194789231_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813767
transcript_60300.known	chr3	+	1687	8	FSM	ENSMUSG00000068744.13	ENSMUST00000102629.8	1687	8	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_1	112.452983372553	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAGCTCTCAGACATAGG	7052	False	NA	68	True	AATAAA	-16	NA	108291174	108295547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_108291212_108291551_108291602_108291689_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
transcript_60303.known	chr3	-	3570	11	FSM	ENSMUSG00000068739.14	ENSMUST00000090553.12	3570	11	0	0	0	0	multi-exon	FALSE	canonical	3	2549	junction_7	105.882198692698	3805	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGAAGGTGTGGTTTATTC	NA	False	NA	NA	False	NA	NA	NA	108352514	108332180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
transcript_60304.known	chr3	-	1866	12	FSM	ENSMUSG00000068739.14	ENSMUST00000102625.11	1866	12	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	974.241336537401	528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGGCTTCCCCAGTCTCC	NA	False	NA	-39	True	AATAAA	-18	NA	108352485	108333927	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_108334298_108334575_108334706_108335176_108335249_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
transcript_60305.known	chr3	-	1801	3	FSM	ENSMUSG00000068739.14	ENSMUST00000197647.2	1801	3	0	0	0	0	multi-exon	FALSE	canonical	3	2675	junction_1	18	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACTCGGCTTCCTTGTCCG	NA	False	NA	NA	False	NA	NA	NA	108352472	108341712	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_108343283_108344824_108344896_108352312
transcript_60306.known	chr3	+	661	5	FSM	ENSMUSG00000027886.8	ENSMUST00000029485.6	661	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.22474487139159	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCCCATGTGTCTGCTGT	571	False	NA	NA	False	ATTAAA	-18	NA	108444856	108452039	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_108445016_108449803_108449918_108450754_108450871_108451351_108451477_108451892
transcript_6031.nic	chr1	-	1427	10	NIC	ENSMUSG00000016481.16	novel	1651	10	NA	NA	-65	0	combination_of_known_junctions	FALSE	canonical	3	121	junction_9	50.3432661280975	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGTGTGGTTCATACTT	NA	False	NA	-1	True	AATAAA	-19	NA	194813959	194786097	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_194786216_194789125_194789231_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813809
transcript_60310.known	chr3	-	414	1	FSM	ENSMUSG00000088185.3	ENSMUST00000157560.3	414	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGGCCCCAGGGCCCGGC	NA	False	NA	NA	False	NA	NA	NA	108462067	108461653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_108461700_108462100
transcript_60311.known	chr3	-	2864	3	FSM	ENSMUSG00000068732.6	ENSMUST00000090546.6	2864	3	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_1	15	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTGCCTGCTTTGTCAT	5274	False	NA	-14	True	AATAAA	-15	NA	108469782	108463740	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_108466277_108467502_108467635_108469586
transcript_60315.known	chr3	+	1655	4	FSM	ENSMUSG00000048100.14	ENSMUST00000056292.8	1655	4	0	0	0	0	multi-exon	TRUE	canonical	2	8	junction_1	76.856287243718	1046	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTTGAGTTTGTGTTTGC	NA	False	NA	14	True	AATAAA	-23	NA	108479014	108489385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_108479430_108480195_108480275_108485431_108485530_108488322
transcript_60316.known	chr3	+	4222	15	FSM	ENSMUSG00000040389.16	ENSMUST00000051145.15	4222	15	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_5	8.19064922297845	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCCTTTTCTCACGGTC	NA	False	NA	3	True	AATAAA	-18	NA	108498594	108553035	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_108498914_108517192_108517360_108518671_108518756_108521648_108521734_108525805_108526609_108530638_108530766_108531872_108532052_108534518_108534777_108537007_108537084_108540376_108540535_108544306_108544477_108545208_108545380_108545941_108546074_108550377_108550597_108551761
transcript_60321.known	chr3	-	3498	15	FSM	ENSMUSG00000027883.16	ENSMUST00000029482.16	3498	15	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_14	18.8820182248852	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGTTAATCAAGTCTTC	NA	False	NA	NA	False	AATAAA	-19	NA	108629625	108585953	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_108587120_108589321_108589540_108589987_108590142_108594135_108594316_108597081_108597153_108604264_108604395_108604843_108604953_108606233_108606390_108607979_108608096_108608202_108608327_108609060_108609204_108609714_108609851_108610180_108610403_108618592_108618897_108629356
transcript_60323.nnic	chr3	+	1937	12	NNC	ENSMUSG00000027884.17	novel	2224	13	NA	NA	-11	0	at_least_one_novel_splicesite	TRUE	canonical	3	14	junction_10	51.4518148970311	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTCTGGTGTGCAGTC	6585	False	NA	6	True	AATAAA	-18	NA	108561217	108586156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_108561368_108568670_108568812_108569247_108569350_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582092_108584000_108584295_108585855
transcript_60324.nic	chr3	+	2125	12	NIC	ENSMUSG00000027884.17	novel	2224	13	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	126	junction_1	23.1716555264122	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTCTGGTGTGCAGTC	6585	False	NA	6	True	AATAAA	-18	NA	108561217	108586156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_+_108561368_108568670_108568812_108569247_108569350_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582280_108584000_108584295_108585855
transcript_60327.known	chr3	+	2043	12	FSM	ENSMUSG00000027884.17	ENSMUST00000106609.8	2043	12	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	36.8117839559091	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTCTGGTGTGCAGTC	6596	False	NA	6	True	AATAAA	-18	NA	108561228	108586156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_108561297_108568670_108568812_108569247_108569350_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582280_108584000_108584295_108585855
transcript_60332.known	chr3	+	358	4	FSM	ENSMUSG00000027884.17	ENSMUST00000124384.8	358	4	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	42.0079357582191	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATGAAAGATTATGAAAG	6641	False	NA	NA	False	NA	NA	NA	108561273	108570860	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_108561368_108568670_108568812_108569247_108569350_108570839
transcript_60335.known	chr3	-	2419	19	FSM	ENSMUSG00000027882.19	ENSMUST00000102621.11	2419	19	0	0	0	0	multi-exon	FALSE	canonical	1	38	junction_10	22.0233461984726	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGAGTTTTTCTTTCT	NA	False	NA	3	True	AATAAA	-17	NA	108747827	108700491	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_108701181_108702117_108702270_108704696_108704783_108706539_108706633_108707370_108707478_108708050_108708190_108709426_108709508_108710861_108710928_108712373_108712432_108712553_108712650_108717192_108717318_108720193_108720285_108723640_108723796_108729103_108729205_108729830_108729910_108733321_108733399_108734341_108734424_108734888_108734939_108747735
transcript_60340.nic	chr3	-	1810	16	ISM	ENSMUSG00000027882.19	ENSMUST00000102621.11	2419	19	-88	5818	-73	1118	5prime_fragment	FALSE	canonical	1	38	junction_7	23.9066703848296	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGCACATGCCTGCTTCA	NA	False	NA	NA	False	NA	NA	NA	108747915	108706309	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_-_108706633_108707370_108707478_108708050_108708190_108709426_108709508_108710861_108710928_108712373_108712432_108712553_108712650_108717192_108717318_108720193_108720285_108723640_108723796_108729103_108729205_108729830_108729910_108733321_108733399_108734341_108734424_108734888_108734939_108747735
transcript_60341.known	chr3	-	553	5	FSM	ENSMUSG00000027882.19	ENSMUST00000106596.4	553	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	53.7331368896326	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATTTGTACTGCTCCCA	NA	False	NA	NA	False	AATAAA	-21	NA	108747826	108732933	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_108733187_108733321_108733399_108734341_108734424_108734888_108734939_108747735
transcript_60344.known	chr3	-	3050	7	FSM	ENSMUSG00000027881.15	ENSMUST00000129273.8	3050	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	171.074707527313	584	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGGTGTTGGTTTCCCC	6881	False	NA	-7	True	AATAAA	-20	NA	108819012	108810120	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_108812079_108812426_108812651_108815102_108815164_108815247_108815400_108815651_108815721_108817658_108817712_108818479
transcript_60347.known	chr3	-	3026	6	FSM	ENSMUSG00000027881.15	ENSMUST00000029480.9	3026	6	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_4	114.013332553697	648	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCCTGGGTGTTGGTTTCC	6850	False	NA	-9	True	AATAAA	-18	NA	108819043	108810122	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_108812079_108812426_108812651_108815102_108815164_108815247_108815400_108815651_108815721_108818479
transcript_60351.known	chr3	+	1838	8	FSM	ENSMUSG00000045662.18	ENSMUST00000106586.7	1838	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.4142135623731	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCAAAGCCACTTGAGAAC	NA	False	NA	NA	False	ATTAAA	-13	NA	108847815	108868090	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_108847906_108848584_108848733_108850042_108850172_108860126_108860240_108861115_108861251_108864930_108865111_108865857_108866036_108867225
transcript_60352.known	chr3	+	3431	10	FSM	ENSMUSG00000040322.11	ENSMUST00000029477.11	3431	10	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	3.55902608401044	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTGTTTTCTAATTGTC	4475	False	NA	NA	False	ATTAAA	-22	NA	109030464	109075773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_109030704_109043527_109043655_109056798_109056887_109062309_109062422_109064162_109064322_109065813_109065961_109066663_109066772_109068532_109068701_109070734_109070886_109073641
transcript_60353.known	chr3	-	3051	2	FSM	ENSMUSG00000049300.12	ENSMUST00000190378.2	3051	2	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTGTAACCTGGTCTAT	NA	False	NA	-8	True	AATAAA	-18	NA	110158309	110153427	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_110155172_110157002
transcript_60354.known	chr3	-	2450	1	FSM	ENSMUSG00000049300.12	ENSMUST00000106567.2	2450	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTTGCTGGGGCTCTATT	NA	False	NA	-12	True	ATTAAA	-19	NA	110158314	110155864	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_110155900_110158300
transcript_60356.known	chr3	-	2616	15	FSM	ENSMUSG00000027981.15	ENSMUST00000106535.2	2616	15	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	33.0729712691713	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACAAAATTTAAATACA	NA	False	NA	NA	False	NA	NA	NA	113423798	113399984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_113400949_113401988_113402058_113402686_113402820_113404706_113404766_113404857_113404953_113407406_113407566_113409011_113409161_113410396_113410523_113413673_113413817_113414757_113414827_113415480_113415593_113416014_113416099_113418587_113418707_113421993_113422042_113423511
transcript_60357.known	chr3	-	1839	15	FSM	ENSMUSG00000027981.15	ENSMUST00000106536.8	1839	15	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_8	14.9497457489813	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGTCTAATTTTTCATTA	NA	False	NA	-1	True	AATAAA	-16	NA	113423798	113399112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_113399297_113401988_113402061_113402686_113402820_113404706_113404766_113404857_113404953_113407406_113407566_113409011_113409161_113410396_113410523_113413673_113413817_113414757_113414827_113415480_113415593_113416014_113416099_113418587_113418707_113421993_113422042_113423511
transcript_60364.known	chr3	-	3046	2	FSM	ENSMUSG00000045092.9	ENSMUST00000055676.4	3046	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTTTGTGAAGAAAACTT	NA	False	NA	1	True	AATAAA	-18	NA	115508721	115504081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_115506764_115508357
transcript_60368.known	chr3	+	1558	8	FSM	ENSMUSG00000033554.18	ENSMUST00000189799.7	1558	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	96.1692810217738	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTGTTTTATAATCTCC	7412	False	NA	8	True	AATAAA	-18	NA	115681485	115722737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_115681807_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157
transcript_60369.known	chr3	-	436	3	FSM	ENSMUSG00000054426.12	ENSMUST00000187055.2	436	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCCTGGGGGAAGGTCTT	934	False	NA	NA	False	NA	NA	NA	115681753	115675434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_115675488_115679970_115680025_115681424
transcript_60371.known	chr3	-	739	3	FSM	ENSMUSG00000054426.12	ENSMUST00000188260.7	739	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	22	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGCCTTGGCTATGGTG	944	False	NA	-5	True	NA	NA	NA	115681743	115675229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_115675488_115679862_115680025_115681424
transcript_60373.known	chr3	-	433	2	FSM	ENSMUSG00000054426.12	ENSMUST00000185424.2	433	2	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATTGCCTTGGCTATGG	1086	False	NA	-7	True	NA	NA	NA	115681601	115675231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_115675488_115681424
transcript_60374.known	chr3	+	1576	8	FSM	ENSMUSG00000033554.18	ENSMUST00000043342.10	1576	8	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_6	12.9331089117215	422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAGCAGTCAGCGACTGAG	7758	False	NA	NA	False	TTTAAA	-6	NA	115681831	115722981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157
transcript_60375.known	chr3	+	1438	8	FSM	ENSMUSG00000033554.18	ENSMUST00000185098.8	1438	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	124.812348944243	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATGTGCTATTATGTGAG	7740	False	NA	NA	False	NA	NA	NA	115681813	115728010	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115727087_115727153_115727303
transcript_60378.known	chr3	-	9020	11	FSM	ENSMUSG00000054414.5	ENSMUST00000067485.4	9020	11	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_7	12.5940462123973	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGAGTCATGACTCTTG	108	False	NA	NA	False	ATTAAA	-17	NA	115801055	115732621	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_115740361_115747700_115747851_115750519_115750611_115772292_115772429_115775410_115775462_115778473_115778624_115783660_115783788_115784375_115784464_115786574_115786689_115800482_115800585_115800783
transcript_60383.known	chr3	+	3000	5	FSM	ENSMUSG00000027963.15	ENSMUST00000029575.12	3000	5	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_4	7.08872343937891	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGGTGCTCTGGTGACGTG	19	False	NA	23	True	AATAAA	-34	NA	115801110	115822666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_115801532_115804270_115804346_115817655_115818084_115818973_115819045_115820661
transcript_60387.known	chr3	+	2840	5	FSM	ENSMUSG00000027963.15	ENSMUST00000106502.2	2840	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	20.597329924046	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGTCATCCACTGTCAAA	52	False	NA	-34	True	AATACA	-45	NA	115801868	115822609	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_115802187_115804270_115804346_115817655_115818084_115818973_115819045_115820661
transcript_60390.known	chr3	-	863	4	FSM	ENSMUSG00000033502.16	ENSMUST00000136994.2	863	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	7.25718035235908	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAGAGTTAATGACCAAGT	NA	False	NA	NA	False	ATTAAA	-10	NA	116217544	116197756	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_116197994_116198191_116198268_116216215_116216307_116217085
transcript_60398.known	chr3	-	1594	11	FSM	ENSMUSG00000000339.15	ENSMUST00000000348.15	1594	11	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_7	31.9274176844918	2012	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGCTGCTGCTTTTTTA	NA	False	NA	0	True	AATAAA	-20	NA	116301857	116282611	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_116282988_116286631_116286737_116287731_116287827_116289284_116289344_116291238_116291364_116293194_116293337_116294760_116294820_116297993_116298118_116300483_116300628_116301399_116301501_116301593
transcript_60410.known	chr3	-	876	9	FSM	ENSMUSG00000000339.15	ENSMUST00000140677.8	876	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	99.4029048871309	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTGCTGAAATGCTATTA	NA	False	NA	NA	False	NA	NA	NA	116301673	116287799	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_116287827_116289284_116289344_116291238_116291364_116293194_116293337_116294760_116294820_116297993_116298118_116300483_116300643_116301399_116301501_116301593
transcript_60414.known	chr3	+	3301	11	FSM	ENSMUSG00000000340.11	ENSMUST00000000349.11	3301	11	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_7	26.1091937830336	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTATGCCTTCATAGTA	NA	False	NA	10	True	AATAAA	-19	NA	116306718	116343630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_116306841_116313885_116314010_116317000_116317077_116326903_116327086_116328393_116328516_116332737_116332955_116333303_116333471_116337416_116337495_116339630_116339823_116339942_116340015_116341681
transcript_60422.nic	chr3	+	979	5	ISM	ENSMUSG00000000340.11	ENSMUST00000000349.11	3301	11	-13	14775	-13	293	5prime_fragment	FALSE	canonical	3	175	junction_2	23.7749868559375	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCATTGTGAATGCAGCAC	NA	False	NA	NA	False	AAGAAA	-6	NA	116306705	116328855	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_116306841_116313885_116314010_116317000_116317077_116326903_116327086_116328393
transcript_60427.known	chr3	+	1894	14	FSM	ENSMUSG00000027959.15	ENSMUST00000198386.5	1894	14	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_7	10.1538461538462	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGATGTCTGCAGCATCT	NA	False	NA	NA	False	TATAAA	-22	NA	116388630	116415251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_116388828_116397110_116397172_116398845_116398926_116399313_116399419_116400971_116401144_116402032_116402099_116403912_116404033_116407554_116407747_116411904_116412100_116412208_116412299_116412372_116412553_116412899_116412982_116413706_116413841_116415031
transcript_6043.nic	chr1	-	1575	9	NIC	ENSMUSG00000016481.16	novel	2776	10	NA	NA	7	-54	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	81.0361609098062	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGTCTTGGTCATGGTG	NA	False	NA	-1	True	NA	NA	NA	194813887	194781020	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr1_-_194781150_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813495
transcript_60436.nic	chr3	+	760	4	ISM	ENSMUSG00000027959.15	ENSMUST00000198386.5	1894	14	-75	15591	-75	770	5prime_fragment	FALSE	canonical	3	61	junction_2	7.25718035235908	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTCTTATTTGTGTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	116388555	116399660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_116388828_116397110_116397172_116398845_116398926_116399313
transcript_60438.known	chr3	-	880	1	FSM	ENSMUSG00000033439.13	ENSMUST00000198454.2	880	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTACTAACCTGCTATACA	NA	False	NA	NA	False	AAAAAG	-7	NA	116388487	116387607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_116387600_116388500
transcript_60439.known	chr3	-	1723	11	FSM	ENSMUSG00000033439.13	ENSMUST00000183638.8	1723	11	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_5	35.5437758264369	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCAATCTGAGTGTGAGGC	NA	False	NA	NA	False	AATAAA	-21	NA	116388509	116374743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_116375260_116376142_116376573_116378844_116378920_116379403_116379477_116382120_116382174_116383139_116383247_116383382_116383453_116383878_116383942_116385841_116385909_116386112_116386160_116388287
transcript_60440.known	chr3	-	1616	11	FSM	ENSMUSG00000033439.13	ENSMUST00000184963.8	1616	11	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	31.2251501197352	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAATCTGAGTGTGAGGCT	NA	False	NA	NA	False	AATAAA	-22	NA	116388485	116374742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_116375260_116376142_116376374_116378844_116378920_116379403_116379477_116382120_116382289_116383139_116383247_116383382_116383453_116383878_116383942_116385841_116385909_116386112_116386160_116388287
transcript_60441.known	chr3	+	2404	17	FSM	ENSMUSG00000027959.15	ENSMUST00000198311.5	2404	17	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_15	13.4290671213603	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAATCTGCCACCTGAGA	NA	False	NA	NA	False	NA	NA	NA	116388656	116422796	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_116388828_116397110_116397172_116398845_116398926_116399313_116399419_116400971_116401144_116402032_116402099_116403912_116404033_116407554_116407747_116411904_116412100_116412208_116412299_116412372_116412553_116412899_116412982_116413706_116413841_116415031_116415158_116420721_116420817_116422166_116422262_116422356
transcript_60442.known	chr3	-	5725	8	FSM	ENSMUSG00000027957.14	ENSMUST00000029569.9	5725	8	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	23.3779941878019	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTCAGTAGTTCCTCAGG	1796	False	NA	-9	True	AATAAA	-20	NA	116506299	116463118	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_116467368_116468819_116468954_116471511_116471631_116474753_116474926_116480710_116480834_116480919_116481075_116488078_116488284_116505731
transcript_60443.known	chr3	-	2782	12	FSM	ENSMUSG00000089911.5	ENSMUST00000029570.9	2782	12	0	0	0	0	multi-exon	FALSE	canonical	3	876	junction_3	57.2050104723397	364	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTGATCTGTGAGTCCC	NA	False	NA	-1	True	AATAAA	-36	NA	116456326	116424812	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_116426130_116427370_116427535_116428551_116428650_116429926_116430040_116434035_116434108_116434895_116435010_116435358_116435578_116439014_116439130_116441430_116441559_116442167_116442231_116445052_116445149_116456043
transcript_60445.nic	chr3	-	903	5	ISM	ENSMUSG00000033400.15	ENSMUST00000159742.8	4344	28	-20	36422	17	-177	5prime_fragment	FALSE	canonical	3	43	junction_4	9.01041064547005	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTAGTATTTTCATTTC	NA	False	NA	NA	False	ATTAAA	-15	NA	116601798	116584605	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_-_116584859_116585666_116585834_116587260_116587472_116600916_116601067_116601676
transcript_60446.known	chr3	+	2377	17	FSM	ENSMUSG00000033386.11	ENSMUST00000040260.11	2377	17	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	82.2666918852946	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116653112	116697127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_116653284_116659837_116659927_116671882_116672100_116674415_116674553_116675406_116675502_116676697_116676846_116678755_116678939_116684553_116684653_116685488_116685637_116689136_116689251_116690326_116690443_116692811_116692899_116694252_116694351_116694601_116694661_116695962_116696107_116696578_116696641_116696717
transcript_60453.known	chr3	+	6823	15	FSM	ENSMUSG00000033386.11	ENSMUST00000195905.5	6823	15	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_9	27.5725388377491	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTTCTGCTTCCCTGTGTA	NA	False	NA	NA	False	CATAAA	-20	NA	116671875	116701826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_116672100_116674415_116674553_116675406_116675502_116676697_116676846_116678755_116678939_116684553_116684653_116685488_116685637_116689136_116689251_116690326_116690443_116692811_116692899_116694252_116694351_116694601_116694661_116695962_116696107_116696578_116696641_116696717
transcript_60454.known	chr3	-	1588	8	FSM	ENSMUSG00000028007.14	ENSMUST00000169812.8	1588	8	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	6.9045976991969	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGATGTGTTCATTT	NA	False	NA	NA	False	AATAAA	-20	NA	117662529	117575519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_117576026_117623225_117623313_117626488_117626689_117630786_117630986_117632468_117632634_117633576_117633688_117640162_117640346_117662392
transcript_60457.known	chr3	+	346	1	FSM	ENSMUSG00000106037.2	ENSMUST00000196114.2	346	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3139	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGACAACTGAATAAATCG	NA	False	NA	-8	True	NA	NA	NA	119503164	119503510	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_119503200_119503500
transcript_60458.known	chr3	-	3777	14	FSM	ENSMUSG00000028134.12	ENSMUST00000200097.5	3777	14	0	0	0	0	multi-exon	TRUE	canonical	3	41	junction_1	15.6821233920295	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGCTGTTCCTTTTTTTA	NA	False	NA	NA	False	AATAAA	-21	NA	119577453	119512390	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_119514107_119514255_119514334_119514437_119514655_119517742_119517836_119518260_119518295_119519714_119519855_119533963_119534160_119541240_119541352_119541438_119541604_119545512_119545657_119546592_119546766_119555351_119555428_119575152_119575184_119576850
transcript_60459.known	chr3	-	1598	13	FSM	ENSMUSG00000028134.12	ENSMUST00000197833.5	1598	13	0	0	0	0	multi-exon	TRUE	canonical	3	11	junction_4	23.7888571020598	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGAAGATGGCGGGCAGAT	NA	False	NA	NA	False	NA	NA	NA	119576883	119513968	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_119514110_119514255_119514334_119514437_119514655_119517742_119517836_119519714_119519855_119533963_119534160_119541240_119541352_119541438_119541604_119545512_119545657_119546592_119546766_119555351_119555428_119575152_119575184_119576850
transcript_60465.known	chr3	-	1158	7	FSM	ENSMUSG00000028133.18	ENSMUST00000106467.8	1158	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	45.7993813640898	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGTAAAGGAACTGTTGT	NA	False	NA	-96	True	AATAGA	-30	NA	120965343	120949587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_120949707_120949835_120949952_120950049_120950166_120952416_120952905_120964760_120964832_120964923_120965069_120965240
transcript_60477.known	chr3	-	1484	5	FSM	ENSMUSG00000028133.18	ENSMUST00000106466.10	1484	5	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	13.1244047484067	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTTGTGTCTGAGAAGGA	NA	False	NA	NA	False	ATTAAA	-23	NA	120965344	120949046	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_120949707_120949835_120949952_120950049_120950166_120952416_120952905_120965240
transcript_60481.known	chr3	-	1145	4	FSM	ENSMUSG00000028133.18	ENSMUST00000039761.12	1145	4	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_2	14.8548533034381	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAAATGATTTCTTAAAG	NA	False	NA	-22	True	NA	NA	NA	120965343	120949513	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_120949952_120950049_120950166_120952416_120952905_120965240
transcript_60482.known	chr3	-	1111	4	FSM	ENSMUSG00000028133.18	ENSMUST00000170781.2	1111	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	45.4043561297323	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATTTGTTTTCATGTTTA	NA	False	NA	-3	True	ATTAAA	-13	NA	120965337	120949494	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_120949952_120950049_120950166_120952463_120952905_120965240
transcript_60483.nnic	chr3	-	564	4	NIC	ENSMUSG00000028133.18	novel	1484	5	NA	NA	-12	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	47.7702836499847	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTTCATGTTTACTTT	NA	False	NA	1	True	ATTAAA	-17	NA	120965356	120949490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_-_120949707_120949835_120949952_120950049_120950166_120965240
transcript_60488.known	chr3	-	2260	3	FSM	ENSMUSG00000028133.18	ENSMUST00000098650.4	2260	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	1	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TGAGAAAAAAAAAAAACAAA	NA	False	NA	NA	False	GGGGCT	-41	NA	120965343	120962819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_120964832_120964923_120965069_120965240
transcript_60491.nnic	chr3	+	875	4	NNC	ENSMUSG00000039887.12	novel	2037	4	NA	NA	-45	313	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	45.1072795307661	58	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACAGGTTCTCTTGGGAC	NA	False	NA	25	True	AATAAA	-26	NA	121085376	121155669	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_121085500_121092252_121092408_121113728_121113861_121155204
transcript_60494.known	chr3	+	441	3	FSM	ENSMUSG00000039887.12	ENSMUST00000199554.2	441	3	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	51	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGACTACTTCATTGTTC	NA	False	NA	NA	False	NA	NA	NA	121085475	121155356	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_121085633_121113728_121113861_121155204
transcript_60495.known	chr3	+	2037	4	FSM	ENSMUSG00000039887.12	ENSMUST00000039442.12	2037	4	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	14.5143607047182	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGCCAGGTATTTTAAGCA	NA	False	NA	NA	False	NA	NA	NA	121085421	121156743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_121085633_121092252_121092408_121113728_121113861_121155204
transcript_60499.nnic	chr3	+	728	5	Antisense	novelGene_ENSMUSG00000106455.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_3	8.25757228245687	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTTCTTCATAGCCCTT	NA	False	NA	NA	False	NA	NA	NA	121163203	121182378	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr3_+_121163338_121167049_121167167_121170921_121170995_121178054_121178117_121182036
transcript_60503.nnic	chr3	-	784	4	Intergenic	novelGene_85	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTCAAAGAGCTTGGCCTG	NA	False	NA	NA	False	AAAACA	-45	NA	121177403	121163203	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr3_-_121163338_121167049_121167167_121170921_121170995_121176943
transcript_60505.nnic	chr3	-	670	4	Intergenic	novelGene_86	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTCAAAGAGCTTGGCCTG	NA	False	NA	NA	False	AAAACA	-45	NA	121182382	121163203	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr3_-_121163338_121167049_121167167_121170921_121170995_121182036
transcript_60506.nnic	chr3	-	690	3	Intergenic	novelGene_84	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTCAAAGAGCTTGGCCTG	NA	False	NA	NA	False	AAAACA	-45	NA	121177382	121163203	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr3_-_121163338_121167049_121167167_121176943
transcript_60507.nnic	chr3	-	597	3	Intergenic	novelGene_87	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTCAAAGAGCTTGGCCTG	NA	False	NA	NA	False	AAAACA	-45	NA	121182382	121163203	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr3_-_121163338_121167049_121167167_121182036
transcript_60511.known	chr3	+	2049	7	FSM	ENSMUSG00000053931.12	ENSMUST00000029773.13	2049	7	0	0	0	0	multi-exon	FALSE	canonical	3	4254	junction_2	486.023204750098	6897	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACAGGCTGGTTATTTTCT	NA	False	NA	27	True	AATAAA	-27	NA	121220145	121251856	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_121220478_121243597_121243720_121243940_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250730
transcript_60515.known	chr3	+	2214	6	FSM	ENSMUSG00000053931.12	ENSMUST00000199188.5	2214	6	0	0	0	0	multi-exon	FALSE	canonical	3	4363	junction_2	396.918329130817	1537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGAACCACAGGCTGGT	NA	False	NA	19	True	AATAAA	-19	NA	121220193	121251848	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_121220478_121243597_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250730
transcript_60516.known	chr3	+	261	2	FSM	ENSMUSG00000053931.12	ENSMUST00000199499.2	261	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGTGATTACATGTGTAC	NA	False	NA	NA	False	AATAAA	-17	NA	121250761	121251598	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_121250862_121251437
transcript_60518.known	chr3	-	2620	15	FSM	ENSMUSG00000039865.9	ENSMUST00000039197.9	2620	15	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_10	3.70672307009404	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGTTTGTTCATCTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	121326053	121253176	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_121253726_121254750_121254988_121257062_121257201_121279910_121279998_121283846_121284004_121291367_121291534_121303022_121303210_121303840_121303966_121305970_121306061_121307305_121307467_121318475_121318570_121319315_121319453_121320712_121320856_121325315_121325421_121325809
transcript_60519.nnic	chr3	-	929	6	NNC	ENSMUSG00000039865.9	novel	2620	15	NA	NA	75	-3024	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7.11617874986288	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAATCCTCCAACTGGTT	NA	False	NA	NA	False	NA	NA	NA	121325978	121316823	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_121316857_121318227_121318570_121319315_121319453_121320712_121320856_121325315_121325421_121325809
transcript_60525.known	chr3	+	1872	6	FSM	ENSMUSG00000028128.14	ENSMUST00000029771.13	1872	6	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	13.6176356244394	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGCATTTATATCTTCCACT	NA	False	NA	NA	False	AATAAA	-22	NA	121517185	121528697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_121517452_121518625_121518732_121522985_121523204_121525172_121525352_121526029_121526190_121527754
transcript_60526.known	chr3	-	3489	23	FSM	ENSMUSG00000028127.11	ENSMUST00000029770.8	3489	23	0	0	0	0	multi-exon	TRUE	canonical	3	145	junction_14	20.5277981251709	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACATGTGCCTGACCTTTT	7131	False	NA	-1	True	ATTAAA	-22	NA	121608951	121552555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_121553959_121555063_121555121_121558649_121558755_121562270_121562391_121562815_121562906_121563000_121563067_121563163_121563242_121565951_121566016_121567637_121567711_121567790_121567883_121569079_121569172_121569265_121569364_121569450_121569521_121570645_121570716_121573203_121573347_121575576_121575634_121577659_121577784_121578121_121578220_121579650_121579721_121585382_121585472_121586452_121586552_121590097_121590135_121608657
transcript_60527.known	chr3	-	638	2	FSM	ENSMUSG00000028127.11	ENSMUST00000199593.2	638	2	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAAAAGAAAAGAAAAG	7236	False	NA	NA	False	NA	NA	NA	121608846	121589685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_121590135_121608657
transcript_60529.known	chr3	+	3606	27	FSM	ENSMUSG00000028125.15	ENSMUST00000141135.5	3606	27	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.880424857096892	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCCTGCTCATTAGTGCTC	NA	False	NA	NA	False	AATAAA	-19	NA	121925650	121973710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_121925703_121926172_121926379_121926701_121926751_121928650_121928914_121930629_121930755_121931218_121931318_121932072_121932260_121935339_121935435_121937048_121937082_121940846_121940953_121941079_121941155_121941378_121941549_121942523_121942702_121948925_121949042_121949986_121950135_121951483_121951608_121951962_121952093_121955949_121956071_121956509_121956573_121957436_121957544_121960296_121960439_121963541_121963677_121964390_121964495_121964577_121964671_121967427_121967678_121969722_121969810_121973362
transcript_60530.known	chr3	+	3311	12	FSM	ENSMUSG00000028121.9	ENSMUST00000029766.9	3311	12	0	0	0	0	multi-exon	TRUE	canonical	3	116	junction_1	21.0877740616698	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGTCTCTTTATTATTGA	NA	False	NA	NA	False	AATATA	-22	NA	122213426	122323840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_122213833_122220093_122220404_122248701_122248742_122298575_122298705_122301774_122302221_122304867_122304972_122305999_122306653_122312911_122313028_122316817_122316990_122318572_122318685_122318935_122319149_122323230
transcript_60532.nic	chr3	+	2537	8	ISM	ENSMUSG00000028121.9	ENSMUST00000029766.9	3311	12	88237	0	-49	0	3prime_fragment	FALSE	canonical	3	148	junction_2	11.5475945016921	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGTCTCTTTATTATTGA	7508	False	NA	NA	False	AATATA	-22	NA	122301663	122323840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_122302221_122304867_122304972_122305999_122306653_122312911_122313028_122316817_122316990_122318572_122318685_122318935_122319149_122323230
transcript_60534.known	chr3	+	766	4	FSM	ENSMUSG00000028121.9	ENSMUST00000197590.2	766	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	59.3127305053477	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTCGCTTCCTCCCAGT	NA	False	NA	NA	False	NA	NA	NA	122213471	122265250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_122213833_122220093_122220404_122248701_122248742_122265195
transcript_60538.known	chr3	+	5589	7	FSM	ENSMUSG00000028124.16	ENSMUST00000029769.14	5589	7	0	0	0	0	multi-exon	FALSE	canonical	3	413	junction_2	51.1826793619352	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGATTTGTAAATATTTT	NA	False	NA	NA	False	AATAAA	-17	NA	122039205	122064381	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_122039761_122049193_122049260_122052855_122052941_122055516_122055577_122056248_122056452_122058442_122058558_122059876
transcript_60540.known	chr3	+	2429	7	FSM	ENSMUSG00000039756.13	ENSMUST00000035776.10	2429	7	0	0	0	0	multi-exon	FALSE	canonical	3	1082	junction_6	112.264073604258	3719	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGCCTCTTGGAATAA	NA	False	NA	23	True	AATAAA	-19	NA	122068036	122078920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_122068128_122068846_122070460_122072394_122072534_122074376_122074473_122075977_122076143_122078042_122078153_122078705
transcript_60541.known	chr3	-	905	2	FSM	ENSMUSG00000104554.2	ENSMUST00000198222.2	905	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTGGCAGTCGAACAATA	9625	False	NA	NA	False	AATAAA	-19	NA	122185460	122170745	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_122171514_122185323
transcript_60542.nic	chr3	-	4076	15	NIC	ENSMUSG00000039735.17	novel	5357	15	NA	NA	-72	0	combination_of_known_junctions	FALSE	canonical	3	47	junction_1	12.9545910229319	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTGTACTTATCTTTTAC	NA	False	NA	1	True	AATAAA	-24	NA	122413436	122332367	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_-_122334574_122335773_122335933_122338192_122338342_122339948_122340044_122340591_122340725_122342804_122342915_122351551_122351756_122352668_122352816_122354481_122354611_122357483_122357589_122362401_122362465_122363243_122363392_122364539_122364594_122383776_122383893_122413178
transcript_60543.known	chr3	-	5198	14	FSM	ENSMUSG00000039735.17	ENSMUST00000162409.8	5198	14	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_7	9.36820759854666	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTAAGATGTGTACTTATC	NA	False	NA	-5	True	AATAAA	-18	NA	122413364	122332373	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_122335933_122338192_122338342_122339948_122340044_122340591_122340725_122342804_122342915_122351551_122351756_122352668_122352816_122354481_122354611_122357483_122357589_122362401_122362465_122363243_122363392_122364539_122364594_122383776_122383893_122413178
transcript_6055.known	chr1	-	913	6	FSM	ENSMUSG00000016481.16	ENSMUST00000191775.2	913	6	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_5	57.7775042728569	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAATATTATTATGGAGAG	NA	False	NA	NA	False	AATGAA	-3	NA	194813894	194797089	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813809
transcript_60550.nic	chr3	-	574	4	ISM	ENSMUSG00000039735.17	ENSMUST00000239148.2	5357	15	-72	30872	-72	-11688	5prime_fragment	FALSE	canonical	3	69	junction_2	11.9536140513607	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTAATATTTATGATTTTC	NA	False	NA	NA	False	AAGAAA	-3	NA	122413436	122363245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_-_122363392_122364539_122364594_122383776_122383893_122413178
transcript_60552.known	chr3	-	1270	2	FSM	ENSMUSG00000106365.2	ENSMUST00000199116.2	1270	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGAGTTGCCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	122423817	122415903	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_122416631_122423274
transcript_60553.known	chr3	-	396	2	FSM	ENSMUSG00000106365.2	ENSMUST00000198040.2	396	2	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACAGCTCAATGGTGGAG	NA	False	NA	NA	False	AATAAA	-25	NA	122423312	122420859	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_122421218_122423274
transcript_60555.known	chr3	+	1160	2	FSM	ENSMUSG00000054091.10	ENSMUST00000106429.6	1160	2	0	0	0	0	multi-exon	FALSE	canonical	3	1657	junction_1	0	17069	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGTTTCACACTGTGTCA	NA	False	NA	22	True	NA	NA	NA	122717851	122719833	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_122718306_122719127
transcript_60556.known	chr3	+	923	1	FSM	ENSMUSG00000039234.12	ENSMUST00000196482.2	923	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCTTACTGTGTTTTA	NA	False	NA	13	True	AATAAA	-13	NA	123158362	123159285	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_123158400_123159300
transcript_60557.known	chr3	+	3903	23	FSM	ENSMUSG00000039234.12	ENSMUST00000047923.12	3903	23	0	0	0	0	multi-exon	TRUE	canonical	3	54	junction_9	11.2449253935915	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTACTGTGTTTTATGTCT	NA	False	NA	18	True	AATAAA	-18	NA	123061103	123159290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_123061186_123063242_123063403_123072793_123072918_123084064_123084214_123087226_123087503_123087807_123087942_123093205_123093318_123099441_123099570_123121156_123121296_123123972_123124089_123130134_123130260_123136689_123136882_123137472_123137567_123143557_123143675_123144348_123144520_123147038_123147136_123147224_123147371_123148595_123148735_123149371_123149491_123152485_123152666_123154468_123154661_123156282_123156373_123158469
transcript_60559.known	chr3	-	2741	11	FSM	ENSMUSG00000028114.17	ENSMUST00000029759.16	2741	11	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_2	25.8534330408942	1360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTTTGTTTTCCTTAGA	NA	False	NA	-2	True	AATAAA	-17	NA	123179757	123161945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_123163340_123164923_123165135_123166205_123166323_123167618_123167712_123168393_123168536_123169793_123169885_123173868_123173957_123174296_123174378_123176403_123176492_123177244_123177334_123179410
transcript_60564.nnic	chr3	-	2422	10	NIC	ENSMUSG00000028114.17	novel	2741	11	NA	NA	-15	0	combination_of_known_splicesites	FALSE	canonical	3	34	junction_1	76.5041756304118	1191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTTTGTTTTCCTTAGA	NA	False	NA	-2	True	AATAAA	-17	NA	123179649	123161945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_-_123163340_123166205_123166323_123167618_123167712_123168393_123168536_123169793_123169885_123173868_123173957_123174296_123174378_123176403_123176492_123177244_123177334_123179410
transcript_60567.known	chr3	-	4202	10	FSM	ENSMUSG00000028114.17	ENSMUST00000174323.6	4202	10	0	0	0	0	multi-exon	TRUE	canonical	3	213	junction_1	26.0261027564896	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTTTGTTTTCCTTAGA	NA	False	NA	-2	True	AATAAA	-17	NA	123179634	123161945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_123165135_123166205_123166323_123167618_123167712_123168393_123168536_123169793_123169885_123173868_123173957_123174296_123174378_123176403_123176492_123177244_123177334_123179410
transcript_60569.known	chr3	+	2602	11	FSM	ENSMUSG00000027978.10	ENSMUST00000029603.10	2602	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.458257569495584	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAAGCCTGCGATTCCTT	NA	False	NA	NA	False	AGTAAA	-43	NA	123240561	123300246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_123241286_123258385_123258537_123271625_123271805_123273213_123273356_123276322_123276520_123279071_123279214_123280605_123280812_123283204_123283284_123285150_123285274_123298926_123299208_123299868
transcript_60573.known	chr3	-	776	1	FSM	ENSMUSG00000104960.2	ENSMUST00000198509.2	776	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGACTGTGTCCTGTTTCT	NA	False	NA	45	True	AATAAA	-18	NA	123301979	123301203	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_123301200_123302000
transcript_60574.known	chr3	-	448	3	FSM	ENSMUSG00000104960.2	ENSMUST00000196466.2	448	3	0	0	0	0	multi-exon	FALSE	canonical	3	427	junction_1	15.5	16964	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGTGTCCTGTTTCTGGA	NA	False	NA	48	True	AATAAA	-21	NA	123302053	123301200	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_123301310_123301465_123301512_123301760
transcript_60575.known	chr3	-	528	2	FSM	ENSMUSG00000104960.2	ENSMUST00000199645.2	528	2	0	0	0	0	multi-exon	FALSE	canonical	3	458	junction_1	0	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAGACTGTGTCCTGTTT	NA	False	NA	43	True	AATAAA	-16	NA	123301982	123301205	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_123301512_123301760
transcript_60576.known	chr3	+	331	1	FSM	ENSMUSG00000096544.3	ENSMUST00000178993.3	331	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GACAGCAAAAGGAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	124179315	124179646	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_124179300_124179600
transcript_60577.known	chr3	+	5524	19	FSM	ENSMUSG00000053819.17	ENSMUST00000199300.5	5524	19	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_9	3.34119443416775	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGTCTTTTGTGGTCTCC	NA	False	NA	NA	False	AATAAA	-22	NA	126390655	126639975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_126391154_126392714_126392810_126478308_126478369_126523055_126523111_126561162_126561229_126564433_126564507_126574008_126574112_126577603_126577688_126589012_126589108_126590486_126590610_126591350_126591435_126591886_126591930_126595372_126595411_126604287_126604337_126628222_126628299_126631911_126632007_126633785_126634015_126635133_126635223_126636406
transcript_60578.known	chr3	+	992	3	FSM	ENSMUSG00000053819.17	ENSMUST00000131156.8	992	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	1.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAAAAAAAAGAAAAAAAAAA	NA	False	NA	NA	False	AATATA	-33	NA	126390989	126479041	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_126391154_126392714_126392810_126478308
transcript_60581.known	chr3	-	2359	1	FSM	ENSMUSG00000032826.20	ENSMUST00000182588.5	2359	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTTGCAGTGGTGGTTT	NA	False	NA	-7	True	AATAAA	-14	NA	126717621	126715262	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_126715300_126717600
transcript_60586.known	chr3	-	2121	13	FSM	ENSMUSG00000027968.12	ENSMUST00000029588.10	2121	13	0	0	0	0	multi-exon	FALSE	canonical	3	466	junction_6	145.639680948108	1671	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTGGTTTTATTTACA	NA	False	NA	-1	True	AATAAA	-17	NA	127346998	127330362	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_127330684_127334193_127334286_127334447_127334608_127336680_127336806_127337802_127337928_127339474_127339620_127339695_127340053_127340124_127340219_127340302_127340468_127340569_127340654_127340738_127340840_127341010_127341196_127346831
transcript_60588.nnic	chr3	+	1086	5	NNC	ENSMUSG00000051278.13	novel	7153	25	NA	NA	-470	-3400	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	29.5582052905788	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGGTATAGCTGACAATT	NA	False	NA	NA	False	AATAAA	-20	NA	127346667	127355087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_127346980_127348944_127349035_127349841_127349923_127353219_127353280_127354544
transcript_6059.known	chr1	-	3859	3	FSM	ENSMUSG00000016481.16	ENSMUST00000193719.2	3859	3	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_2	96	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAGAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	194813842	194808222	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_194811555_194812137_194812318_194813495
transcript_60592.known	chr3	-	2662	10	FSM	ENSMUSG00000074238.7	ENSMUST00000051737.8	2662	10	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_8	26.3288791357173	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATATTTGCATCATGGCTT	NA	False	NA	-16	True	AATAAA	-16	NA	127631160	127600660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_127602403_127605864_127605994_127606182_127606257_127606888_127606945_127609244_127609344_127610558_127610656_127614408_127614435_127616232_127616260_127616913_127616963_127630797
transcript_60593.known	chr3	-	1598	1	FSM	ENSMUSG00000074238.7	ENSMUST00000198626.2	1598	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATGCATTAGGTTATGC	NA	False	NA	-8	True	AATAAA	-16	NA	127602513	127600915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_127600900_127602500
transcript_60594.known	chr3	-	198	4	FSM	ENSMUSG00000074238.7	ENSMUST00000200238.5	198	4	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_2	9.46337971105226	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	127630880	127614395	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_127614435_127616232_127616260_127616913_127616963_127630797
transcript_60595.known	chr3	+	2271	3	FSM	ENSMUSG00000028023.17	ENSMUST00000042587.12	2271	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGGTCTGGATTCTTTC	NA	False	NA	NA	False	AGTAAA	-14	NA	129007620	129013237	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_129008431_129009287_129009494_129011982
transcript_60596.nnic	chr3	+	1435	2	NNC	ENSMUSG00000028023.17	novel	1942	5	NA	NA	3279	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTCTGGATTCTTTCTCC	NA	False	NA	NA	False	AGTAAA	-17	NA	129011202	129013240	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_129011380_129011982
transcript_60598.known	chr3	+	776	1	FSM	ENSMUSG00000106258.2	ENSMUST00000198361.2	776	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	193	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTACACTAAATTTTCTGT	NA	False	NA	NA	False	AAAAAG	-36	NA	129255620	129256396	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_129255600_129256400
transcript_60600.known	chr3	+	5951	5	FSM	ENSMUSG00000041220.11	ENSMUST00000071402.7	5951	5	0	0	0	0	multi-exon	FALSE	canonical	1	87	junction_1	129.619635858152	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTCTAGTTCTTTGTTG	NA	False	NA	17	True	AATAAA	-25	NA	129326034	129432144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_129326145_129326296_129326418_129398689_129398822_129421931_129422084_129426708
transcript_60610.known	chr3	+	2275	4	FSM	ENSMUSG00000041220.11	ENSMUST00000197070.5	2275	4	0	0	0	0	multi-exon	FALSE	canonical	1	15	junction_3	88.9094420682578	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAGAAAGAAAGAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	129326015	129428601	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_129326145_129326296_129326418_129398689_129398822_129426708
transcript_60612.known	chr3	+	2610	4	FSM	ENSMUSG00000041220.11	ENSMUST00000199910.5	2610	4	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_1	79.2001683499894	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	129326003	129428620	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_129326418_129398689_129398822_129421931_129422084_129426708
transcript_60618.nnic	chr3	+	446	3	NNC	ENSMUSG00000041220.11	novel	2275	4	NA	NA	-33	-94923	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	42.5	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCAAGTGGAGCCACGCCA	NA	False	NA	NA	False	AATAAA	-14	NA	129325970	129327045	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_129326145_129326296_129326418_129326894
transcript_60626.known	chr3	-	655	3	FSM	ENSMUSG00000105837.5	ENSMUST00000197370.5	655	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	7.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGAACCCATTTTTTTC	6961	False	NA	NA	False	AATAAA	-8	NA	129325758	129321115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_129321464_129324707_129324814_129325557
transcript_60627.nnic	chr3	-	697	3	NNC	ENSMUSG00000105837.5	novel	655	3	NA	NA	124	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	0	69	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGAACCCATTTTTTTC	6806	False	NA	NA	False	AATAAA	-8	NA	129325913	129321115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_129321464_129324707_129324814_129325670
transcript_60628.nnic	chr3	-	562	3	NNC	ENSMUSG00000105837.5	novel	655	3	NA	NA	-85	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	9.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGAACCCATTTTTTTC	6876	False	NA	NA	False	AATAAA	-8	NA	129325843	129321115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_129321464_129324707_129324814_129325735
transcript_6063.known	chr10	+	3669	28	FSM	ENSMUSG00000040675.18	ENSMUST00000117291.8	3669	28	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_27	39.2310170953031	469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTTCAGCTAGTAAAGCCA	NA	False	NA	14	True	AATAAA	-19	NA	3923117	4106111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_3923479_3928633_3928719_3930215_3930267_3930350_3930405_3934083_3934209_3935565_3935667_3939860_3939998_3957741_3957854_3965513_3965606_3966723_3966822_3968425_3968600_3978394_3978532_3980689_3980737_3982231_3982340_3983288_3983364_3985215_3985319_3991772_3991850_3997830_3997972_3998199_3998269_4006749_4006862_4033736_4033877_4038233_4038276_4039294_4039396_4039995_4040174_4053235_4053344_4056376_4056530_4098008_4098127_4105541
transcript_60635.known	chr3	-	1271	7	FSM	ENSMUSG00000028010.17	ENSMUST00000029643.15	1271	7	0	0	0	0	multi-exon	FALSE	canonical	3	868	junction_6	342.204130113397	9585	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTTTATTGAACGGAACCTA	NA	False	NA	-1	True	AATAAA	-22	NA	129625045	129618560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_129618859_129619196_129619266_129620472_129620624_129622553_129622614_129622985_129623141_129624243_129624503_129624766
transcript_6064.known	chr10	+	3535	28	FSM	ENSMUSG00000040675.18	ENSMUST00000043735.8	3535	28	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_27	66.4418431300526	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTTCAGCTAGTAAAGCCA	NA	False	NA	14	True	AATAAA	-19	NA	3923143	4106111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_3923479_3928633_3928719_3930215_3930267_3930350_3930405_3934083_3934209_3935565_3935667_3939860_3939998_3957741_3957854_3965513_3965606_3966723_3966822_3968425_3968600_3978394_3978532_3980689_3980737_3982231_3982340_3983288_3983364_3985215_3985319_3991772_3991850_3997830_3997972_3998199_3998269_4006749_4006862_4033736_4033877_4038233_4038276_4039294_4039396_4039995_4040174_4053235_4053344_4056376_4056530_4098008_4098127_4105649
transcript_60643.known	chr3	+	1561	4	FSM	ENSMUSG00000027999.16	ENSMUST00000029629.15	1561	4	0	0	0	0	multi-exon	FALSE	canonical	3	341	junction_1	3.68178700572909	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGAGTGTTTTCAAGTCT	NA	False	NA	25	True	AATAAA	-25	NA	129672254	129689474	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_129672585_129682529_129682607_129683916_129684083_129688486
transcript_60654.known	chr3	+	1456	7	FSM	ENSMUSG00000027997.10	ENSMUST00000029626.9	1456	7	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_5	8.11206234909197	937	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATGGCACTCTGAGGAT	NA	False	NA	NA	False	AATAAA	-14	NA	129695073	129707752	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_129695156_129699114_129699157_129699551_129699702_129700049_129700127_129704171_129704348_129705766_129705924_129706980
transcript_60658.known	chr3	+	567	1	FSM	ENSMUSG00000063328.7	ENSMUST00000076703.7	567	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5781	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAACAAGAAAATATTTCAA	9169	False	NA	NA	False	NA	NA	NA	129862060	129862627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_129862100_129862600
transcript_60670.known	chr3	-	704	1	FSM	ENSMUSG00000041084.9	ENSMUST00000197152.2	704	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	239	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTAGAGTGTGGACTTT	NA	False	NA	-6	True	AATAAA	-17	NA	130490271	130489567	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_130489600_130490300
transcript_60671.known	chr3	-	1720	1	FSM	ENSMUSG00000041084.9	ENSMUST00000197828.2	1720	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	130503065	130501345	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_130501300_130503100
transcript_60672.known	chr3	-	1067	4	FSM	ENSMUSG00000041084.9	ENSMUST00000043937.9	1067	4	0	0	0	0	multi-exon	FALSE	canonical	3	1781	junction_1	135.7063823931	10736	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGTGGACTTTTTGTTGT	NA	False	NA	1	True	AATAAA	-24	NA	130503093	130489560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_130490128_130496964_130497163_130499598_130499693_130502885
transcript_60690.known	chr3	-	495	5	FSM	ENSMUSG00000062006.13	ENSMUST00000196202.5	495	5	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_4	3611.9776092883	578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATGCACATTTTTTAAGT	NA	False	NA	-56	True	NA	NA	NA	130523970	130520524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523837
transcript_60692.known	chr3	-	480	5	FSM	ENSMUSG00000062006.13	ENSMUST00000079085.11	480	5	0	0	0	0	multi-exon	FALSE	canonical	3	6284	junction_4	1283.0290331867	57176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTACGCTTCCGTTATCT	NA	False	NA	-19	True	AATAAA	-12	NA	130524047	130520487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523966
transcript_60698.known	chr3	-	477	4	FSM	ENSMUSG00000062006.13	ENSMUST00000135691.2	477	4	0	0	0	0	multi-exon	FALSE	canonical	3	6284	junction_3	871.596619237745	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAGTAATAAAAATCAA	NA	False	NA	-44	True	AATAGA	-11	NA	130523991	130520512	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_130520609_130522396_130522501_130522699_130522952_130523966
transcript_60701.known	chr3	-	573	1	FSM	ENSMUSG00000062006.13	ENSMUST00000199001.2	573	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	220	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCTTCCGTTATCTGTGAT	NA	False	NA	-14	True	AATAAA	-17	NA	130521055	130520482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_130520500_130521100
transcript_60702.known	chr3	-	624	5	FSM	ENSMUSG00000062006.13	ENSMUST00000062601.14	624	5	0	0	0	0	multi-exon	FALSE	canonical	3	513	junction_4	3512.03875085398	11271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGTTATCTGTGATTTG	NA	False	NA	-11	True	AATAAA	-20	NA	130523986	130520479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523769
transcript_60710.known	chr3	-	1789	8	FSM	ENSMUSG00000027984.9	ENSMUST00000029610.9	1789	8	0	0	0	0	multi-exon	FALSE	canonical	3	722	junction_3	33.5492327841959	1940	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGCCTGTCTTCTCTGA	NA	False	NA	NA	False	AATAAA	-43	NA	131065750	131027067	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_131027937_131029191_131029309_131034585_131034659_131036164_131036255_131038808_131038936_131042064_131042223_131043451_131043581_131065524
transcript_60721.known	chr3	-	1716	4	FSM	ENSMUSG00000027983.14	ENSMUST00000200236.2	1716	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGGCTATGGACAGCAGT	NA	False	NA	NA	False	NA	NA	NA	131096849	131086936	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_131087334_131089036_131089199_131091434_131092071_131096328
transcript_60722.nic	chr3	-	1329	2	ISM	ENSMUSG00000027983.14	ENSMUST00000200236.2	1716	4	-34	4360	-7	-3224	5prime_fragment	FALSE	canonical	2	4	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCGAGAGGTGAACAGCGG	NA	False	NA	NA	False	AGTAAA	-20	NA	131096883	131091296	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_-_131092071_131096328
transcript_60724.known	chr3	+	2648	13	FSM	ENSMUSG00000028032.14	ENSMUST00000199878.5	2648	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	13.8531484588242	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATGGTTTGTGTGCATA	NA	False	NA	6	True	AATAAA	-17	NA	131270656	131349431	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_131270745_131273262_131273440_131285071_131285187_131288141_131288378_131288847_131288987_131290808_131290928_131305625_131305740_131307735_131307848_131311605_131311812_131313088_131313225_131324781_131325051_131337346_131337577_131348724
transcript_60726.known	chr3	+	2600	12	FSM	ENSMUSG00000028032.14	ENSMUST00000029666.14	2600	12	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_4	6.54292880561694	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGGTTTGTGTGCATAT	NA	False	NA	7	True	AATAAA	-18	NA	131270528	131349432	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_131270745_131285071_131285187_131288141_131288378_131288847_131288987_131290808_131290928_131305625_131305740_131307735_131307848_131311605_131311812_131313088_131313225_131324781_131325051_131337346_131337577_131348724
transcript_60728.nic	chr3	+	940	6	ISM	ENSMUSG00000028030.13	ENSMUST00000029664.8	3170	24	-86	81070	-30	16635	5prime_fragment	FALSE	canonical	1	21	junction_1	31.6505924115174	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGTGATCATTAGCATT	NA	False	NA	NA	False	AATAAA	-5	NA	132389874	132421525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_132390156_132392532_132392754_132400143_132400217_132411273_132411389_132413545_132413620_132421349
transcript_60731.known	chr3	+	5195	3	FSM	ENSMUSG00000028030.13	ENSMUST00000198147.5	5195	3	0	0	0	0	multi-exon	FALSE	canonical	1	21	junction_1	47	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATATTTCTAAATTAC	NA	False	NA	NA	False	NA	NA	NA	132389928	132404890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_132390156_132392532_132392754_132400143
transcript_60736.known	chr3	-	1146	7	FSM	ENSMUSG00000028029.12	ENSMUST00000198513.6	1146	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	349.626785142227	1242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTTTTTTGATTCGTCT	NA	False	NA	2	True	TATAAA	-20	NA	132389883	132366241	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_132366503_132373145_132373315_132377739_132377949_132379725_132379891_132380509_132380624_132382765_132382900_132389789
transcript_60739.known	chr3	-	1126	7	FSM	ENSMUSG00000028029.12	ENSMUST00000029663.11	1126	7	0	0	0	0	multi-exon	FALSE	canonical	3	854	junction_6	52.4195150259477	8893	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTCTTGCTCATTTTTTG	NA	False	NA	-16	True	AATAAA	-31	NA	132389645	132366259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_132366503_132373145_132373315_132377739_132377949_132379725_132379891_132380509_132380624_132382765_132382900_132389553
transcript_60740.known	chr3	-	535	4	FSM	ENSMUSG00000028029.12	ENSMUST00000197793.5	535	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	452.36587944814	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGGAGAAGAAAAGAAGGTGA	NA	False	NA	-27	True	NA	NA	NA	132390131	132379766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_132379891_132380509_132380624_132382765_132382900_132389968
transcript_60741.known	chr3	-	3503	12	FSM	ENSMUSG00000028018.16	ENSMUST00000029651.11	3503	12	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_3	19.4795930515641	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTGACTCCTCTCAGAT	NA	False	NA	-3	True	NA	NA	NA	132797586	132687512	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_132688981_132692145_132692216_132701926_132701958_132704585_132704720_132709424_132709554_132711148_132711194_132711320_132711437_132768326_132768421_132777660_132777913_132787799_132788268_132790336_132790787_132797340
transcript_60745.nic	chr3	-	1669	4	ISM	ENSMUSG00000028018.16	ENSMUST00000161577.8	1975	10	-97	72835	-19	9563	5prime_fragment	FALSE	canonical	3	184	junction_1	16.8720676464584	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACATCCTATCTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	132797605	132777426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_-_132777913_132787799_132788268_132790336_132790787_132797340
transcript_60746.nic	chr3	-	1525	4	ISM	ENSMUSG00000028018.16	ENSMUST00000161577.8	1975	10	-97	72979	-19	9419	5prime_fragment	FALSE	canonical	3	184	junction_1	16.8720676464584	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTATGCATCTTATTTATA	NA	False	NA	NA	False	AATAAA	-19	NA	132797605	132777570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_-_132777913_132787799_132788268_132790336_132790787_132797340
transcript_60749.known	chr3	+	3101	7	FSM	ENSMUSG00000028016.10	ENSMUST00000029650.9	3101	7	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_1	13.0213499897497	453	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCCTGTAGATGTTTTTG	NA	False	NA	NA	False	AATAAA	-23	NA	132797600	132816749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_132797738_132802508_132802674_132804170_132804324_132806383_132806569_132808117_132808278_132812699_132812847_132814595
transcript_60753.nnic	chr3	+	1236	12	NNC	ENSMUSG00000028013.17	novel	1514	7	NA	NA	-305	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	157.808755478855	67	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTCTTTTATATATTTAT	NA	False	NA	21	True	AATAAA	-28	NA	133015565	133083839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_133015748_133026696_133026762_133028332_133028378_133032408_133032463_133036153_133036274_133045023_133045111_133053824_133053952_133073583_133073712_133076140_133076227_133079383_133079454_133082309_133082350_133083607
transcript_60755.known	chr3	+	1368	12	FSM	ENSMUSG00000028013.17	ENSMUST00000122334.8	1368	12	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_11	149.418321201731	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTATTATATTCATAACTTC	NA	False	NA	NA	False	AATAAA	-14	NA	133015882	133083996	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_133016043_133026696_133026762_133028332_133028378_133032408_133032463_133036153_133036274_133045023_133045111_133053824_133053952_133073583_133073712_133076140_133076227_133079383_133079454_133082309_133082350_133083610
transcript_60765.known	chr3	+	1514	7	FSM	ENSMUSG00000028013.17	ENSMUST00000125858.5	1514	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	206.165319316535	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTTATATATTTATTAAT	NA	False	NA	25	True	AATAAA	-32	NA	133044869	133083843	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_133045697_133053824_133053952_133073583_133073712_133076140_133076227_133079383_133079454_133082309_133082350_133083607
transcript_60769.known	chr3	-	9179	11	FSM	ENSMUSG00000040943.13	ENSMUST00000098603.8	9179	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	56.8116185300155	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATTCTGTTGCAGAGGT	NA	False	NA	-5	True	AATAAA	-24	NA	133250151	133169439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_133173952_133175036_133175401_133177100_133177239_133179356_133179447_133182245_133182397_133185893_133186103_133187094_133187189_133188999_133189079_133191272_133194479_133219789_133219935_133249960
transcript_60770.nnic	chr3	-	650	3	NNC	ENSMUSG00000040943.13	novel	726	3	NA	NA	-26	5	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	50.5	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCTGAACTACTAGTAAGT	NA	False	NA	NA	False	AATAAA	-19	NA	133250089	133219212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_133219589_133219789_133219935_133249960
transcript_60772.known	chr3	-	484	2	FSM	ENSMUSG00000040943.13	ENSMUST00000195913.2	484	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATTAGATTTCTTTCTGT	NA	False	NA	NA	False	AATAAA	-38	NA	133250047	133244522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_133244920_133249960
transcript_60773.known	chr3	+	7910	46	FSM	ENSMUSG00000045328.12	ENSMUST00000062893.12	7910	46	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_28	46.2867818371455	237	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATAAGCCTTGTTGTGTG	NA	False	NA	101	True	TTTAAA	-43	NA	134918297	134979372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_134918476_134920864_134920957_134922092_134922183_134922306_134922426_134923013_134923134_134923793_134923876_134924234_134924303_134924384_134924451_134926040_134926093_134927988_134928077_134928930_134929061_134930717_134930838_134934517_134934677_134935808_134935966_134937125_134937215_134938657_134938826_134939488_134939564_134939731_134939852_134940593_134940717_134940826_134940984_134941217_134941373_134943263_134943579_134943687_134943961_134944075_134944232_134945517_134945710_134946708_134946868_134947823_134948115_134948237_134948394_134949360_134949640_134952247_134952407_134952577_134952863_134953098_134953387_134953830_134953990_134954142_134954425_134955416_134955576_134957182_134957444_134961207_134961310_134962237_134962457_134964952_134965148_134965739_134965944_134967279_134967508_134970068_134970182_134971671_134971770_134974700_134974882_134976434_134976722_134978911
transcript_60782.known	chr3	+	1172	10	FSM	ENSMUSG00000028167.16	ENSMUST00000120397.8	1172	10	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	10.4880884817015	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTAGTTTTTTTTCTTAA	NA	False	NA	21	True	AATAAA	-31	NA	134986981	135010187	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_134987130_134991275_134991429_134994021_134994101_134995315_134995413_134996754_134996864_135000988_135001050_135002580_135002695_135006434_135006494_135007322_135007416_135009928
transcript_60784.known	chr3	+	1059	10	FSM	ENSMUSG00000028167.16	ENSMUST00000029817.11	1059	10	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	15.3099660916801	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTAGTTTTTTTTCTTAA	NA	False	NA	21	True	AATAAA	-31	NA	134987021	135010187	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_134987130_134991348_134991429_134994021_134994101_134995315_134995413_134996754_134996864_135000988_135001050_135002580_135002695_135006434_135006494_135007322_135007416_135009928
transcript_60792.known	chr3	+	4818	13	FSM	ENSMUSG00000037994.15	ENSMUST00000051849.10	4818	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.55232800084976	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCTGAAGGAGCTGTGAC	NA	False	NA	NA	False	NA	NA	NA	135013505	135051148	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_135013543_135022814_135022955_135024040_135024222_135027646_135027818_135029389_135029533_135030269_135030398_135031854_135032031_135034752_135034860_135035528_135035679_135036343_135036453_135038176_135038314_135042114_135042336_135048030
transcript_60813.known	chr3	+	2072	11	FSM	ENSMUSG00000050150.17	ENSMUST00000160460.8	2072	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	39.2898205646195	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACAGATTTCTTCATGTA	NA	False	NA	NA	False	TTTAAA	-20	NA	135053818	135098844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097921_135098011_135098457
transcript_60814.nic	chr3	+	1907	11	NIC	ENSMUSG00000050150.17	novel	2072	11	NA	NA	-34	1035	combination_of_known_junctions	FALSE	canonical	3	24	junction_9	33.6964389809962	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGCTTTATTTTTGTTT	NA	False	NA	6	True	AATACA	-16	NA	135053755	135099879	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097921_135098011_135099720
transcript_60835.nic	chr3	+	1451	7	ISM	ENSMUSG00000050150.17	ENSMUST00000160460.8	2072	11	-63	18607	-34	51	5prime_fragment	FALSE	canonical	3	60	junction_5	29.9146935282461	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTGTATAGCCAGGTTCT	NA	False	NA	5	True	ATTAAA	-17	NA	135053755	135080237	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034
transcript_60836.nic	chr3	+	1676	7	ISM	ENSMUSG00000050150.17	ENSMUST00000160460.8	2072	11	-63	18382	-34	0	5prime_fragment	FALSE	canonical	3	60	junction_5	29.9146935282461	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCTCAAAAATCAATTGATC	NA	False	NA	NA	False	AAAAAG	-3	NA	135053755	135080462	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034
transcript_60858.known	chr3	+	1196	4	FSM	ENSMUSG00000050150.17	ENSMUST00000160047.8	1196	4	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	29.6348143611905	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTGGTCTTCAAATTTAA	NA	False	NA	14	True	AATAAA	-25	NA	135053806	135063828	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217
transcript_60860.known	chr3	+	1407	4	FSM	ENSMUSG00000050150.17	ENSMUST00000160941.8	1407	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	61.0136596727869	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAATTGTATTCATTG	NA	False	NA	NA	False	NA	NA	NA	135053806	135064067	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_135053859_135054090_135054535_135060771_135060833_135063217
transcript_60868.known	chr3	+	1545	6	FSM	ENSMUSG00000050150.17	ENSMUST00000162767.2	1545	6	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_4	32.6521055982612	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCTCAAAAATCAATTGATC	NA	False	NA	NA	False	AAAAAG	-3	NA	135054090	135080462	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034
transcript_60876.known	chr3	+	787	9	FSM	ENSMUSG00000078578.10	ENSMUST00000198748.5	787	9	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	1137.45118027105	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTTTTTGATTTTCTTA	NA	False	NA	7	True	AATAAA	-14	NA	135144514	135171058	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_135144626_135145404_135145560_135160946_135161011_135161106_135161139_135162361_135162406_135164558_135164637_135165735_135165842_135168710_135168805_135170955
transcript_60880.known	chr3	+	1512	8	FSM	ENSMUSG00000078578.10	ENSMUST00000106291.10	1512	8	0	0	0	0	multi-exon	FALSE	canonical	2	536	junction_1	766.131549422427	874	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGTTAGCTGCCTGGAT	NA	False	NA	73	True	AATAAA	-13	NA	135143994	135171819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_135144114_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
transcript_60885.known	chr3	+	3833	8	FSM	ENSMUSG00000078578.10	ENSMUST00000197859.5	3833	8	0	0	0	0	multi-exon	FALSE	canonical	2	870	junction_1	657.273775778808	1057	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGTCTTACTCAGTAAT	NA	False	NA	5	True	ATTAAA	-18	NA	135144325	135173959	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_135144626_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
transcript_60895.known	chr3	+	2504	8	FSM	ENSMUSG00000078578.10	ENSMUST00000166033.6	2504	8	0	0	0	0	multi-exon	FALSE	canonical	2	723	junction_1	704.867942473291	844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATATGTAATTTGGACAT	NA	False	NA	NA	False	AATAAA	-29	NA	135144240	135172711	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_135144460_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
transcript_60916.known	chr3	-	511	3	FSM	ENSMUSG00000097032.3	ENSMUST00000182865.2	511	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTCTTATATCTAAAAGTAT	NA	False	NA	NA	False	AATAAA	-32	NA	135144426	135141969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_135142168_135142295_135142364_135144181
transcript_60917.known	chr3	+	738	8	FSM	ENSMUSG00000078578.10	ENSMUST00000199613.5	738	8	0	0	0	0	multi-exon	FALSE	canonical	2	236	junction_1	865.692126071883	732	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAATTACTGTTCCTTTTT	NA	False	NA	-4	True	AATAAA	-3	NA	135144076	135171047	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_135144194_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
transcript_60918.known	chr3	+	2515	7	FSM	ENSMUSG00000078578.10	ENSMUST00000197539.5	2515	7	0	0	0	0	multi-exon	FALSE	canonical	2	2193	junction_4	278.873129258131	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGGATTGTTTGACAAGT	NA	False	NA	11	True	AATAAA	-12	NA	135144897	135172434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
transcript_60919.known	chr3	+	380	6	FSM	ENSMUSG00000078578.10	ENSMUST00000196591.5	380	6	0	0	0	0	multi-exon	FALSE	canonical	2	37	junction_1	1024.63503746456	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCATCCAAATATTAACAG	NA	False	NA	NA	False	NA	NA	NA	135144293	135165756	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_135144324_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735
transcript_6092.known	chr10	+	5956	3	FSM	ENSMUSG00000038587.11	ENSMUST00000239373.2	5956	3	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	774.5	671	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCACTGTTTTTTTATTAA	NA	False	NA	23	True	AATAAA	-19	NA	4284544	4309470	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_4284710_4303141_4307940_4308477
transcript_60923.known	chr3	+	3675	17	FSM	ENSMUSG00000028164.16	ENSMUST00000029814.10	3675	17	0	0	0	0	multi-exon	TRUE	canonical	3	85	junction_8	25.1755554804656	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCATTGAACACCATGTC	NA	False	NA	11	True	AATAAA	-19	NA	135191371	135277165	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_135191619_135212669_135212765_135216735_135216842_135217563_135217735_135223663_135223788_135228752_135228929_135230277_135230389_135248072_135248225_135250486_135250605_135253310_135253398_135254960_135255129_135256823_135257043_135260520_135260686_135268965_135269111_135272248_135272392_135273224_135273483_135275975
transcript_60926.known	chr3	-	2520	13	FSM	ENSMUSG00000028163.18	ENSMUST00000129428.8	2520	13	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_8	12.1275054685161	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTGGTTTATCTGTGATT	NA	False	NA	0	True	AATAAA	-21	NA	135314244	135290642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_135291277_135295087_135295266_135296076_135296250_135296540_135296608_135297314_135297440_135299591_135299695_135299969_135300140_135300625_135300828_135307186_135307302_135309470_135309613_135310817_135311007_135312332_135312423_135313912
transcript_60928.nic	chr3	-	1763	7	ISM	ENSMUSG00000028163.18	ENSMUST00000129428.8	2520	13	14019	-227	-23	0	3prime_fragment	FALSE	canonical	3	48	junction_1	5.39804491356722	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTCTGATCTCTGCAAA	NA	False	NA	0	True	AATAAA	-25	NA	135300225	135290415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_-_135291277_135295087_135295266_135296076_135296250_135296540_135296608_135297314_135297440_135299591_135299695_135299969
transcript_60931.known	chr3	+	4758	13	FSM	ENSMUSG00000028161.18	ENSMUST00000070198.14	4758	13	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_9	19.2887416789057	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGATGTGAGTATTGCTTG	NA	False	NA	13	True	AATAAA	-22	NA	136375884	136643488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_136376663_136503486_136503688_136574362_136574488_136581849_136581962_136583390_136583537_136587161_136587302_136593707_136593786_136596196_136596292_136608863_136608990_136611059_136611135_136627593_136627679_136634282_136634381_136640789
transcript_60933.nic	chr3	+	810	3	Fusion	ENSMUSG00002076808.1_ENSMUSG00000046818.8	novel	241	3	NA	NA	41	344	multi-exon	FALSE	canonical	0	0	junction_1	33.5	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATTTGTAGTTTGCCTGC	NA	False	NA	NA	False	AATAAA	-21	NA	137327275	137332279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr3_+_137327391_137329892_137330035_137331726
transcript_60935.known	chr3	+	2722	3	FSM	ENSMUSG00000046818.8	ENSMUST00000053855.8	2722	3	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	6.5	216	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTTGGCCTCTTTGTTT	NA	False	NA	NA	False	AATAAA	-18	NA	137329432	137334094	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_137329645_137329892_137330035_137331726
transcript_60938.known	chr3	-	370	2	FSM	ENSMUSG00000105676.2	ENSMUST00000198830.2	370	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTTGCCACATGACAAAT	NA	False	NA	NA	False	ATTAAA	-32	NA	137569944	137569447	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_137569599_137569725
transcript_6094.nnic	chr10	-	796	2	Antisense	novelGene_ENSMUSG00000038587.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	3	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAATAAGTCTTAAATTGAAA	NA	False	NA	NA	False	ATTAAA	-25	NA	4216765	4215482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr10_-_4215930_4216416
transcript_60957.known	chr3	+	1069	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	0	0	0	0	multi-exon	FALSE	canonical	3	13832	junction_1	739.113320134335	78542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGTACTTTTGTTGT	NA	False	NA	32	True	ATTAAA	-21	NA	137570247	137572683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
transcript_60958.known	chr3	+	810	5	FSM	ENSMUSG00000037894.14	ENSMUST00000174561.8	810	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_3	6290.0667921732	2401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTAGCTTTAAACTTGCT	NA	False	NA	-3	True	AATAAA	-12	NA	137570333	137572579	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571840_137571902_137572146
transcript_60959.known	chr3	+	361	4	FSM	ENSMUSG00000037894.14	ENSMUST00000173666.8	361	4	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_1	7077.14110515131	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATACGTGGAGATGAAGAA	NA	False	NA	NA	False	NA	NA	NA	137570351	137571844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_137570448_137570893_137570972_137571280_137571395_137571771
transcript_60960.known	chr3	+	9477	8	FSM	ENSMUSG00000074212.8	ENSMUST00000090178.10	9477	8	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	5.20204041600946	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAAGGCTTGTCTTCATT	NA	False	NA	NA	False	AATAAA	-20	NA	137573435	137622318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_137573818_137591033_137591206_137598568_137598715_137607947_137608134_137609643_137609739_137610505_137610616_137611645_137611819_137614105
transcript_60962.known	chr3	-	427	1	FSM	ENSMUSG00000104675.2	ENSMUST00000195951.2	427	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGGTGTTTGTACATTCA	NA	False	NA	NA	False	AATAAA	-22	NA	137624206	137623779	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_137623800_137624200
transcript_60964.known	chr3	+	733	7	FSM	ENSMUSG00000091512.6	ENSMUST00000197064.5	733	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	115.993773779266	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGGTCTGAGAACACCAC	60	False	NA	NA	False	TATAAA	-16	NA	137624266	137633980	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_137624389_137624633_137624680_137625681_137625717_137630872_137630932_137632569_137632704_137633107_137633172_137633707
transcript_60965.known	chr3	+	989	1	FSM	ENSMUSG00000091512.6	ENSMUST00000197798.2	989	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAATTCATGGGC	80	False	NA	NA	False	NA	NA	NA	137624286	137625275	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_137624300_137625300
transcript_60966.known	chr3	+	1295	7	FSM	ENSMUSG00000091512.6	ENSMUST00000168345.6	1295	7	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_3	73.5090697351921	2001	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGCTCTGTATAGGCCT	80	False	NA	2	True	AATAAA	-22	NA	137624286	137634526	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_137624425_137624633_137624680_137625681_137625717_137630872_137630932_137632569_137632704_137633107_137633172_137633707
transcript_60967.known	chr3	-	3083	9	FSM	ENSMUSG00000028159.15	ENSMUST00000029806.13	3083	9	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	5.49431524395898	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGTCCAACTTTTATAACA	NA	False	NA	NA	False	ATTAAA	-25	NA	137687306	137636767	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_137638951_137641342_137641431_137643497_137643584_137644897_137644961_137646621_137646670_137655407_137655539_137667202_137667337_137671641_137671765_137687079
transcript_60969.nic	chr3	-	902	6	ISM	ENSMUSG00000028159.15	ENSMUST00000029806.13	3083	9	-36	7990	-36	-5893	5prime_fragment	FALSE	canonical	3	22	junction_5	4.60434577328853	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGAGGGGGCGGGGCACA	NA	False	NA	NA	False	NA	NA	NA	137687342	137644757	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_-_137644961_137646621_137646670_137655407_137655539_137667202_137667337_137671641_137671765_137687079
transcript_60970.nic	chr3	-	581	3	ISM	ENSMUSG00000028159.15	ENSMUST00000029806.13	3083	9	-36	30374	-36	-11654	5prime_fragment	FALSE	canonical	3	22	junction_2	1	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCTTGGAGTCTGGTGAC	NA	False	NA	NA	False	AATACA	-17	NA	137687342	137667141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_-_137667337_137671641_137671765_137687079
transcript_60978.known	chr3	+	4064	8	FSM	ENSMUSG00000004127.13	ENSMUST00000162864.8	4064	8	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	64.2622179282759	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCCTGTCAGCTAATGTT	NA	False	NA	NA	False	AATAAA	-19	NA	137849277	137865579	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_137849469_137853135_137853332_137854114_137854275_137855214_137855287_137856163_137856239_137857952_137858103_137860453_137860560_137862465
transcript_60985.known	chr3	+	4025	8	FSM	ENSMUSG00000004127.13	ENSMUST00000040321.13	4025	8	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_7	16.9609395196067	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGTCAGCTAATGTTAAT	NA	False	NA	NA	False	AATAAA	-22	NA	137849208	137865582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_137849358_137853135_137853332_137854114_137854275_137855214_137855287_137856163_137856239_137857952_137858103_137860453_137860560_137862465
transcript_60987.known	chr3	+	1492	9	FSM	ENSMUSG00000074207.11	ENSMUST00000004232.10	1492	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	3.01817411691241	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGTTTTCTGTGAAACCT	NA	False	NA	NA	False	AATAAA	-28	NA	137983254	137996459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_137983498_137985491_137985594_137986134_137986274_137988196_137988285_137988375_137988596_137992452_137992714_137994509_137994646_137995562_137995702_137996295
transcript_6099.nic	chr10	-	2040	13	NIC	ENSMUSG00000019763.12	novel	3139	13	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_12	29.0128084741129	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCTTTCAGCTCTTAAT	5707	False	NA	-5	True	NA	NA	NA	4382343	4353170	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_-_4353502_4353873_4353991_4357804_4357926_4360712_4360790_4361666_4361732_4363308_4363416_4364542_4364644_4367152_4367193_4368555_4368632_4372081_4372191_4377170_4377692_4379076_4379172_4382063
transcript_60991.known	chr3	+	1314	9	FSM	ENSMUSG00000037797.15	ENSMUST00000013458.9	1314	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.58113883008419	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTGCTTGCTGCTCTTT	8785	False	NA	NA	False	TATAAA	-17	NA	138121255	138136653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_138121311_138123885_138123988_138124950_138125090_138126385_138126474_138127922_138128155_138129754_138130016_138133731_138133862_138134797_138134937_138136485
transcript_60999.known	chr3	+	1604	9	FSM	ENSMUSG00000028138.9	ENSMUST00000005964.7	1604	9	0	0	0	0	multi-exon	FALSE	canonical	3	1845	junction_1	151.305103598656	12817	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCAAGTATTCAGAAAACTT	4924	False	NA	NA	False	AATAAA	-18	NA	138148853	138161260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_138148955_138151050_138151153_138152843_138152986_138153612_138153701_138156659_138156880_138157004_138157266_138159502_138159639_138160428_138160568_138160845
transcript_61.known	ERCC-00130	+	1051	1	FSM	ERCC-00130A	EF011072	1051	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42572	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1051	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00130_+_0_1100
transcript_61000.known	chr3	+	742	2	FSM	ENSMUSG00000028138.9	ENSMUST00000162024.2	742	2	0	0	0	0	multi-exon	FALSE	canonical	3	1845	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTTTATGACACAAAGTTA	4942	False	NA	NA	False	NA	NA	NA	138148871	138151709	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_138148955_138151050
transcript_61003.known	chr3	-	2686	11	FSM	ENSMUSG00000005813.13	ENSMUST00000029804.13	2686	11	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_4	33.5143252953121	473	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCACTTTTTCTAGTTGTA	NA	False	NA	-9	True	ATTAAA	-15	NA	138195276	138164716	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_138166262_138168125_138168192_138171984_138172129_138174594_138174727_138177911_138178051_138179664_138179749_138180747_138180840_138184630_138184692_138186448_138186562_138188827_138188880_138195018
transcript_61008.known	chr3	+	4991	8	FSM	ENSMUSG00000028156.13	ENSMUST00000029803.12	4991	8	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_1	682.812550845279	2761	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTGCTTGCTTTTTTTGGG	NA	False	NA	NA	False	ATTAAA	-16	NA	138231939	138265457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_138232056_138233028_138233076_138252081_138252189_138253419_138253516_138256023_138256088_138256653_138256768_138259342_138259483_138261150
transcript_6101.known	chr10	-	3139	13	FSM	ENSMUSG00000019763.12	ENSMUST00000042251.11	3139	13	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_3	17.5220099684178	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAACAAAAACAAAA	5662	False	NA	NA	False	TTTAAA	-7	NA	4382388	4351914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_4353502_4353873_4353991_4357804_4357926_4360712_4360790_4361666_4361732_4363308_4363416_4364542_4364644_4367152_4367193_4368555_4368632_4372081_4372191_4377170_4377692_4379076_4379172_4382265
transcript_61016.known	chr3	-	478	1	FSM	ENSMUSG00000086123.4	ENSMUST00000153140.2	478	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCCTAATGTACACAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	138534923	138534445	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_138534400_138534900
transcript_61017.known	chr3	-	3383	14	FSM	ENSMUSG00000028149.13	ENSMUST00000029796.11	3383	14	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_10	15.970386796752	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACAGTGAGATTACTTGGT	NA	False	NA	-10	True	AATAAA	-17	NA	138780831	138631670	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_138633474_138647490_138647620_138651423_138651551_138661082_138661223_138661954_138662081_138663170_138663306_138664314_138664447_138664796_138664941_138669585_138669712_138671628_138671758_138721306_138721433_138727573_138727697_138756241_138756350_138780796
transcript_61019.known	chr3	-	1533	2	FSM	ENSMUSG00000028149.13	ENSMUST00000195953.2	1533	2	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAGAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	AATACA	-43	NA	138780901	138754921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_138756350_138780796
transcript_61021.known	chr3	-	5016	13	FSM	ENSMUSG00000028273.16	ENSMUST00000029941.16	5016	13	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_4	21.3476514451174	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCACGCCTGGCCTTTTTT	7003	False	NA	-4	True	AATAAA	-19	NA	142101454	141945350	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_141948531_141950656_141950773_141953055_141953177_141955090_141955272_141964890_141965054_141983577_141983763_142009703_142009741_142010057_142010231_142017883_142018303_142020166_142020210_142058494_142058647_142097473_142097612_142101346
transcript_61028.known	chr3	-	1196	8	FSM	ENSMUSG00000028273.16	ENSMUST00000196908.5	1196	8	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	69.1041804459183	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACAATTGGTGTGCTTTCC	7078	False	NA	NA	False	NA	NA	NA	142101379	142008981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_142009183_142009703_142009741_142010057_142010231_142017883_142018303_142020166_142020210_142058494_142058647_142097473_142097612_142101346
transcript_61031.known	chr3	+	4206	14	FSM	ENSMUSG00000040213.14	ENSMUST00000044392.11	4206	14	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	23.3184793520062	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTTTTGGTTATAGTG	NA	False	NA	NA	False	NA	NA	NA	142406840	142452631	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_142406937_142412449_142412557_142424136_142424196_142426121_142426267_142428875_142429026_142431181_142431269_142431724_142431851_142431942_142432064_142435519_142435597_142436962_142437053_142440234_142440422_142443532_142443607_142443985_142444073_142449831
transcript_61040.nic	chr3	+	552	4	ISM	ENSMUSG00000040213.14	ENSMUST00000129775.8	1798	15	-69	23739	-26	-5600	intron_retention	FALSE	canonical	3	81	junction_2	14.7271480229163	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAACTGTCTTAACCTGGAA	NA	False	NA	NA	False	NA	NA	NA	142406785	142426360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_142406937_142412449_142412553_142424136_142424196_142426121
transcript_61044.known	chr3	+	1455	7	FSM	ENSMUSG00000028271.10	ENSMUST00000029938.10	1455	7	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_1	21.5129160170246	2330	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTGTTATAGTATTAAT	NA	False	NA	8	True	AATAAA	-15	NA	142470805	142489367	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_142471050_142477146_142477254_142483951_142484086_142485452_142485600_142485730_142485861_142487100_142487383_142488956
transcript_61045.known	chr3	-	1417	5	FSM	ENSMUSG00000028266.18	ENSMUST00000121796.8	1417	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	16.8281757775464	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGGTTTAAACGCTGCT	NA	False	NA	-1	True	AATAAA	-28	NA	143908157	143894290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_143895067_143899656_143899813_143900167_143900265_143907573_143907813_143908008
transcript_61046.known	chr3	-	1669	5	FSM	ENSMUSG00000028266.18	ENSMUST00000120539.8	1669	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_4	8.32165848854662	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGGTTTAAACGCTGCT	NA	False	NA	-1	True	AATAAA	-28	NA	143910981	143894290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_143895067_143899656_143899813_143900167_143900265_143907573_143907813_143910580
transcript_61051.known	chr3	+	825	5	FSM	ENSMUSG00000037072.17	ENSMUST00000144859.4	825	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	590.880434182754	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAATAGAGGAAGTGGATA	NA	False	NA	NA	False	NA	NA	NA	144276064	144303018	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_144276173_144283346_144283515_144296372_144296437_144300661_144300712_144302583
transcript_61055.known	chr3	+	1514	5	FSM	ENSMUSG00000037072.17	ENSMUST00000082437.11	1514	5	0	0	0	0	multi-exon	FALSE	canonical	3	1325	junction_1	27.3404462289846	9867	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGCTTTGTCCTTTCGTG	NA	False	NA	28	True	AATAAA	-30	NA	144276186	144303441	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_144276561_144283346_144283515_144296372_144296437_144300661_144300712_144302583
transcript_61056.known	chr3	+	1178	4	FSM	ENSMUSG00000037072.17	ENSMUST00000106211.3	1178	4	0	0	0	0	multi-exon	FALSE	canonical	1	13	junction_3	635.117486944126	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTTTGATTTTAAATTAG	NA	False	NA	9	True	AATAAA	-11	NA	144276453	144303422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_144276561_144283346_144283515_144296372_144296437_144302583
transcript_61057.known	chr3	-	3961	9	FSM	ENSMUSG00000037062.14	ENSMUST00000163279.6	3961	9	0	0	0	0	multi-exon	TRUE	canonical	3	282	junction_5	25.8444868395563	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAATT	NA	False	NA	NA	False	AAAACA	-20	NA	144426096	144394604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_144397294_144397660_144397890_144402614_144402716_144403138_144403229_144411273_144411367_144412358_144412493_144414993_144415123_144418347_144418490_144425742
transcript_61065.known	chr3	+	2564	17	FSM	ENSMUSG00000028256.17	ENSMUST00000098538.9	2564	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	36.2293044371542	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACAGTATAAGTTTTAAAG	NA	False	NA	NA	False	AATAAA	-23	NA	144824349	144859656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_144824544_144829971_144830137_144831853_144831987_144832783_144832913_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144852523_144852683_144854291_144854378_144854675_144854839_144856720_144856847_144859144
transcript_61068.known	chr3	+	2425	16	FSM	ENSMUSG00000028256.17	ENSMUST00000106192.9	2425	16	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	23.1944437791084	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGCAAGTGTCTCGCTATA	NA	False	NA	NA	False	AATAAA	-43	NA	144824349	144859676	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_144824544_144829971_144830137_144831853_144831987_144832783_144832913_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
transcript_61071.known	chr3	+	2261	16	FSM	ENSMUSG00000028256.17	ENSMUST00000098539.7	2261	16	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	28.4320632776136	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAATTTTAATAACAGTATA	NA	False	NA	NA	False	AATAAA	-13	NA	144824360	144859646	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_144824421_144829971_144830137_144831853_144831987_144832783_144832913_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
transcript_61072.nnic	chr3	+	2296	16	NNC	ENSMUSG00000028256.17	novel	913	7	NA	NA	-136	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	26.9686237443935	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAATAACAGTATAAGTT	NA	False	NA	NA	False	AATAAA	-17	NA	144824598	144859650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_144824690_144829971_144830137_144831853_144831987_144832783_144832913_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
transcript_61074.nic	chr3	+	2662	16	NIC	ENSMUSG00000028256.17	novel	913	7	NA	NA	-72	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	28.4320632776136	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAATAACAGTATAAGTT	NA	False	NA	NA	False	AATAAA	-17	NA	144824662	144859650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_+_144825120_144829971_144830137_144831853_144831987_144832783_144832913_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
transcript_61075.known	chr3	+	2239	15	FSM	ENSMUSG00000028256.17	ENSMUST00000029920.15	2239	15	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	27.9021614260419	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAATAACAGTATAAGTT	NA	False	NA	NA	False	AATAAA	-17	NA	144824380	144859650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_144824544_144829971_144830137_144831853_144831987_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
transcript_6108.nnic	chr10	-	1165	4	NNC	ENSMUSG00000019763.12	novel	468	4	NA	NA	18	2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	71.9506003372376	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACACTGAGTTCAAGTCCAA	5680	False	NA	NA	False	NA	NA	NA	4382370	4376091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_4376536_4377170_4377692_4379076_4379172_4382265
transcript_61087.known	chr3	+	1127	11	FSM	ENSMUSG00000074182.9	ENSMUST00000199033.5	1127	11	0	0	0	0	multi-exon	TRUE	canonical	3	509	junction_1	98.0487633782293	6310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGTGCATGTTACTGCC	NA	False	NA	49	True	ATTAAA	-23	NA	145281959	145309868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_145282049_145282605_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
transcript_61088.known	chr3	+	2339	10	FSM	ENSMUSG00000074182.9	ENSMUST00000098534.9	2339	10	0	0	0	0	multi-exon	FALSE	canonical	3	657	junction_9	57.8243402122986	2680	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGAACATGTGTTATGTG	NA	False	NA	NA	False	AATATA	-45	NA	145281986	145310550	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
transcript_61089.known	chr3	+	805	8	FSM	ENSMUSG00000074182.9	ENSMUST00000196413.5	805	8	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	261.376419466373	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGATCCGTCAGAGGTAGG	NA	False	NA	NA	False	AATGAA	-39	NA	145282012	145300420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_145282174_145282605_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354
transcript_6109.known	chr10	-	776	3	FSM	ENSMUSG00000019763.12	ENSMUST00000155172.8	776	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	63	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGGCCGCTGAAAGCATC	5755	False	NA	NA	False	AATGAA	-34	NA	4382295	4377242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_4377692_4379076_4379172_4382063
transcript_61090.known	chr3	+	498	5	FSM	ENSMUSG00000074182.9	ENSMUST00000197940.5	498	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	319.285432646089	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCTCACTTTTACTGTAT	NA	False	NA	NA	False	NA	NA	NA	145282028	145288391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_145282049_145282605_145282752_145283975_145284114_145284199_145284286_145288283
transcript_61091.known	chr3	-	2019	5	FSM	ENSMUSG00000028195.5	ENSMUST00000029846.5	2019	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	2.58602010819715	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGAATGTATGTTGTTT	NA	False	NA	NA	False	AATAAA	-16	NA	145355736	145352730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_145353724_145353951_145354167_145354287_145354633_145354976_145355191_145355484
transcript_61093.known	chr3	+	1700	2	FSM	ENSMUSG00000097183.3	ENSMUST00000181247.3	1700	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCGGCTGCTTAAGTCCTT	NA	False	NA	NA	False	NA	NA	NA	145356066	145358228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_145356676_145357137
transcript_61095.known	chr3	+	3764	6	FSM	ENSMUSG00000028194.16	ENSMUST00000029845.15	3764	6	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_5	17.0105849399719	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGTAGTGTCTGTCTCGT	NA	False	NA	9	True	AATAAA	-18	NA	145464429	145600032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_145464920_145551459_145551560_145558005_145558080_145558911_145559032_145594838_145594983_145597196
transcript_61096.nnic	chr3	-	374	2	Antisense	novelGene_ENSMUSG00000105388.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	1999	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGCGTTTTTAATGGCTG	NA	False	NA	NA	False	NA	NA	NA	145585154	145584739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr3_-_145584807_145584847
transcript_61098.nnic	chr3	+	371	2	Genic_Genomic	ENSMUSG00000105388.2	novel	321	1	NA	NA	-33	59	multi-exon	FALSE	canonical	0	0	junction_1	0	1899	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTTCTCTCACAGAGGACC	8268	False	NA	NA	False	AATAAA	-34	NA	145584741	145585154	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr3_+_145584841_145584882
transcript_61101.known	chr3	+	321	1	FSM	ENSMUSG00000105388.2	ENSMUST00000197973.2	321	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	93519	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGATTTTGTTATGAAGAC	8301	False	NA	NA	False	NA	NA	NA	145584774	145585095	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_145584800_145585100
transcript_61102.known	chr3	+	1949	3	FSM	ENSMUSG00000028191.12	ENSMUST00000029842.9	1949	3	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_2	11.5	1312	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGAAAATATTTCAGAG	NA	False	NA	87	True	AATATA	-9	NA	145630016	145640111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_145630271_145636160_145636450_145638705
transcript_61104.known	chr3	+	1644	4	FSM	ENSMUSG00000036873.14	ENSMUST00000134575.8	1644	4	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_2	61.937244225282	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAACTTAGCATCTTGT	NA	False	NA	3	True	ATTAAA	-17	NA	145643796	145650582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_145644084_145644297_145644425_145644652_145644852_145649551
transcript_61105.known	chr3	+	514	4	FSM	ENSMUSG00000036873.14	ENSMUST00000152783.2	514	4	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_3	20.0388511535855	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCGGGCATCTAAGATTCG	NA	False	NA	NA	False	AAGAAA	-38	NA	145643944	145649565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_145644084_145644297_145644425_145644652_145644852_145649516
transcript_6111.known	chr10	-	1772	3	FSM	ENSMUSG00000019763.12	ENSMUST00000156940.8	1772	3	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_2	8	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACACTGAGTTCAAGTCC	5706	False	NA	NA	False	NA	NA	NA	4382344	4376093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_4377692_4379076_4379172_4382265
transcript_61113.known	chr3	+	724	3	FSM	ENSMUSG00000036873.14	ENSMUST00000190472.2	724	3	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_2	94.5	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAGATGATCATGGAAATAA	NA	False	NA	-10	True	NA	NA	NA	145644039	145649997	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_145644084_145644652_145644852_145649516
transcript_61115.known	chr3	+	1547	3	FSM	ENSMUSG00000036873.14	ENSMUST00000039571.14	1547	3	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_2	10.5	786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAACTTAGCATCTTGTTT	NA	False	NA	5	True	ATTAAA	-19	NA	145643768	145650584	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_145644084_145644652_145644852_145649551
transcript_61118.known	chr3	+	2892	7	FSM	ENSMUSG00000028189.13	ENSMUST00000061937.13	2892	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	4.91313432432789	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTGACTTATTTTGATC	5954	False	NA	NA	False	AATAAA	-15	NA	146156224	146171604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_146156386_146160101_146160241_146160702_146160912_146163090_146163263_146164497_146164596_146165433_146165596_146169653
transcript_61124.known	chr3	+	2629	6	FSM	ENSMUSG00000028189.13	ENSMUST00000029840.4	2629	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	9.43186089804128	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATTAAATATAATTTTT	5977	False	NA	NA	False	NA	NA	NA	146156247	146171526	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_146156386_146160101_146160241_146160702_146160912_146163090_146163263_146164497_146164596_146169653
transcript_61136.known	chr3	+	593	3	FSM	ENSMUSG00000068523.13	ENSMUST00000119130.2	593	3	0	0	0	0	multi-exon	FALSE	canonical	2	51	junction_1	1761	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCCTCCTTACTGATGT	NA	False	NA	2	True	AATAAA	-15	NA	146205863	146211303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_146206102_146209014_146209155_146211088
transcript_61138.known	chr3	+	593	3	FSM	ENSMUSG00000068523.13	ENSMUST00000090031.12	593	3	0	0	0	0	multi-exon	FALSE	canonical	3	3573	junction_2	41.5	25090	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTGGGTACTAATCTTT	NA	False	NA	26	True	AATAAA	-39	NA	146205561	146211327	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_146205776_146209014_146209155_146211088
transcript_61143.known	chr3	-	1978	5	FSM	ENSMUSG00000028187.11	ENSMUST00000199079.2	1978	5	0	0	0	0	multi-exon	FALSE	canonical	3	522	junction_4	35.3765459026175	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAAAAAAAAAAAACAAAAC	NA	False	NA	NA	False	AATACA	-16	NA	146227166	146216549	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_146218051_146218570_146218667_146223480_146223562_146225141_146225199_146226923
transcript_61144.known	chr3	+	2737	8	FSM	ENSMUSG00000028186.15	ENSMUST00000029837.14	2737	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.728431359084684	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTCTATGAAGCTCTTAG	NA	False	NA	NA	False	AATAAA	-20	NA	146302831	146338060	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_146302989_146316024_146316244_146318037_146318155_146318247_146318327_146330218_146330403_146331509_146331634_146333555_146333640_146336287
transcript_61147.nnic	chr3	-	725	3	NNC	ENSMUSG00000048652.13	novel	729	4	NA	NA	-10	-1810	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGACGGCGTGGTGCGCTG	NA	False	NA	NA	False	AATAAA	-16	NA	146391240	146388014	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_146388527_146390687_146390851_146391190
transcript_61149.known	chr3	-	4347	10	FSM	ENSMUSG00000005034.16	ENSMUST00000102515.10	4347	10	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	11.8415464455544	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTATTGAGTCTTCTGTCCG	2698	False	NA	NA	False	ATTAAA	-20	NA	146518715	146435328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_146438469_146443688_146443854_146451014_146451138_146452354_146452451_146453675_146453803_146456237_146456321_146457201_146457301_146461386_146461516_146463461_146463524_146518392
transcript_6115.known	chr10	+	2429	5	FSM	ENSMUSG00000061759.16	ENSMUST00000095893.11	2429	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	80.5927260985754	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCACTGGTTTTTATTTG	NA	False	NA	9	True	AATAAA	-18	NA	4382466	4405141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_4382712_4384827_4384934_4389491_4389737_4400646_4400810_4403471
transcript_61151.nnic	chr3	+	527	3	Antisense	novelGene_ENSMUSG00000005034.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	0.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAATGTGCTCTGTAGTTG	NA	False	NA	NA	False	TATAAA	-27	NA	146438213	146441117	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr3_+_146438272_146438383_146438492_146440756
transcript_61154.known	chr3	-	537	1	FSM	ENSMUSG00000070343.4	ENSMUST00000084614.5	537	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	78934	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTGATCCAAAAAGCTAAT	NA	False	NA	NA	False	NA	NA	NA	146545102	146544565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_146544600_146545100
transcript_61159.nnic	chr3	+	618	4	NNC	ENSMUSG00000104786.2	novel	570	3	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.942809041582063	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCAGTTTTGCTCACTAA	NA	False	NA	NA	False	AATAAA	-16	NA	148694770	148709667	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_+_148694990_148704478_148704510_148706606_148706772_148709464
transcript_61160.known	chr3	+	570	3	FSM	ENSMUSG00000104786.2	ENSMUST00000196445.2	570	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCAGTTTTGCTCACTAA	NA	False	NA	NA	False	AATAAA	-16	NA	148694787	148709667	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_148694990_148706606_148706772_148709464
transcript_61167.nnic	chr3	-	808	2	Genic_Genomic	ENSMUSG00000047676.7	novel	885	1	NA	NA	-78	89	multi-exon	FALSE	canonical	0	0	junction_1	0	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATAGCTATAATATCATAA	NA	False	NA	NA	False	AATAAA	-36	NA	149779257	149778205	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr3_-_149778678_149778921
transcript_61168.known	chr3	-	885	1	FSM	ENSMUSG00000047676.7	ENSMUST00000057740.7	885	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	314	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGCTGTGCAGGTGCC	NA	False	NA	NA	False	NA	NA	NA	149779179	149778294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_149778300_149779200
transcript_61170.nnic	chr3	-	1467	6	NNC	ENSMUSG00000039131.16	novel	1596	6	NA	NA	302	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	12.1885191881541	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGTGGGTATTTTTCTT	NA	False	NA	NA	False	CATAAA	-17	NA	151871085	151799475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_151799933_151808255_151808338_151813577_151813685_151833672_151833854_151843209_151843396_151870631
transcript_61178.known	chr3	-	1596	6	FSM	ENSMUSG00000039131.16	ENSMUST00000046614.10	1596	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	6.40624695121879	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGTGGGTATTTTTCTT	NA	False	NA	NA	False	CATAAA	-17	NA	151871867	151799475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_151799933_151808255_151808338_151813577_151813685_151833672_151833854_151843209_151843396_151871284
transcript_61179.known	chr3	-	2464	3	FSM	ENSMUSG00000028035.14	ENSMUST00000050073.13	2464	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	1.5	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTATTTAGAAATTCTGT	NA	False	NA	NA	False	AATAGA	-6	NA	151899482	151889591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_151891018_151892051_151892621_151899013
transcript_61184.known	chr3	+	6523	20	FSM	ENSMUSG00000028034.16	ENSMUST00000166984.8	6523	20	0	0	0	0	multi-exon	FALSE	canonical	1	416	junction_13	269.035426927065	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATGAGTGTTTGTGTCTT	NA	False	NA	11	True	AATAAA	-16	NA	151916058	151942463	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151938031
transcript_61185.known	chr3	+	1040	12	FSM	ENSMUSG00000028034.16	ENSMUST00000199202.5	1040	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	499.405894973101	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGAAGAAATGGAGAAATGA	NA	False	NA	NA	False	NA	NA	NA	151916109	151926136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_151916338_151919613_151919705_151920461_151920525_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101
transcript_61186.known	chr3	+	2374	20	FSM	ENSMUSG00000028034.16	ENSMUST00000196695.5	2374	20	0	0	0	0	multi-exon	FALSE	canonical	1	416	junction_13	300.522177130688	717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCGGTAAGTTGGATA	NA	False	NA	25	True	AATAAA	-15	NA	151916155	151938408	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151938031
transcript_61187.known	chr3	+	2552	20	FSM	ENSMUSG00000028034.16	ENSMUST00000200524.5	2552	20	0	0	0	0	multi-exon	FALSE	canonical	1	74	junction_19	393.500738277491	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTCGGTAAGTTGGATAT	NA	False	NA	26	True	AATAAA	-16	NA	151916118	151938409	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151937891
transcript_61188.known	chr3	+	2526	20	FSM	ENSMUSG00000028034.16	ENSMUST00000196739.5	2526	20	0	0	0	0	multi-exon	FALSE	canonical	1	74	junction_19	415.06742768987	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCGGTAAGTTGGATA	NA	False	NA	25	True	AATAAA	-15	NA	151916134	151938408	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931846_151933807_151933883_151937513_151937660_151937891
transcript_61189.known	chr3	-	4965	16	FSM	ENSMUSG00000054942.14	ENSMUST00000073089.13	4965	16	0	0	0	0	multi-exon	TRUE	canonical	3	131	junction_7	24.7194030852059	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTTTGTTCTTAATGACT	NA	False	NA	-34	True	AATAAA	-13	NA	152046044	151979485	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_151982491_151984529_151984647_151989418_151989473_151990838_151990974_151993141_151993241_151994692_151994780_151996096_151996170_151996427_151996547_152002753_152002855_152023250_152023375_152026246_152026381_152027986_152028114_152039117_152039255_152040888_152041067_152043362_152043682_152045888
transcript_61190.nic	chr3	-	1730	6	ISM	ENSMUSG00000054942.14	ENSMUST00000199334.5	4024	14	-38	38368	-14	11450	5prime_fragment	FALSE	canonical	3	188	junction_4	9.69535971483266	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCTTAACTGTGGGCTTC	NA	False	NA	3	True	NA	NA	NA	152046058	152025581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_-_152026381_152027986_152028114_152039117_152039255_152040888_152041067_152043362_152043682_152045888
transcript_61191.nic	chr3	-	1633	5	ISM	ENSMUSG00000054942.14	ENSMUST00000199334.5	4024	14	-38	40071	-14	9747	5prime_fragment	FALSE	canonical	3	188	junction_3	9.28708781050335	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATACCTGAGTATTATTCT	NA	False	NA	NA	False	ATTAAA	-19	NA	152046058	152027284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_-_152028114_152039117_152039255_152040888_152041067_152043362_152043682_152045888
transcript_61196.known	chr3	+	4183	24	FSM	ENSMUSG00000025437.16	ENSMUST00000197748.5	4183	24	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_13	66.1683137664235	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGATTTTCTAACTCTAG	NA	False	NA	NA	False	AATAAA	-25	NA	152052125	152099254	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_152052277_152063476_152063609_152063782_152063837_152064272_152064336_152065919_152066073_152067536_152067640_152069614_152069685_152071850_152071965_152072377_152072457_152073872_152074288_152075913_152076055_152079022_152079136_152080256_152080427_152080527_152080623_152081878_152081913_152084480_152084527_152085072_152085254_152086150_152086278_152087351_152087522_152088547_152088630_152089752_152089862_152095377_152095481_152097286_152097356_152097845
transcript_61197.known	chr3	+	3886	24	FSM	ENSMUSG00000025437.16	ENSMUST00000117492.9	3886	24	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_13	62.1055263911158	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACTGAATGTTGAATTT	NA	False	NA	NA	False	AATAAA	-17	NA	152052114	152098970	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_152052277_152063476_152063609_152063782_152063837_152064272_152064336_152065919_152066073_152067536_152067640_152069614_152069685_152071850_152071965_152072377_152072457_152073872_152074288_152075913_152076055_152079022_152079136_152080256_152080427_152080551_152080623_152081878_152081913_152084480_152084527_152085072_152085254_152086150_152086278_152087351_152087522_152088547_152088630_152089752_152089862_152095377_152095481_152097286_152097356_152097845
transcript_6120.known	chr10	+	828	4	FSM	ENSMUSG00000061759.16	ENSMUST00000152294.2	828	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	86.821656284593	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGACTTATACGCTGAACTG	NA	False	NA	NA	False	NA	NA	NA	4382639	4403958	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_4382712_4384827_4384934_4400646_4400810_4403471
transcript_61202.known	chr3	+	7539	14	FSM	ENSMUSG00000039068.17	ENSMUST00000106101.2	7539	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	63.1683202752023	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTTCCATTTATTTC	NA	False	NA	13	True	AATAAA	-15	NA	152102330	152168463	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_152102399_152125651_152125778_152128254_152128409_152132913_152134470_152152435_152152575_152154415_152154564_152154649_152154766_152155281_152155354_152156246_152156349_152156939_152157036_152157627_152157781_152161456_152161592_152163505_152163607_152163890
transcript_61209.known	chr3	+	4737	11	FSM	ENSMUSG00000039047.18	ENSMUST00000159899.8	4737	11	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_8	39.6252444787411	685	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTCTTGTGCAGTAAGCC	3957	False	NA	NA	False	NA	NA	NA	152419736	152494663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_152419865_152422698_152422753_152428121_152428214_152443822_152443959_152445765_152445878_152448125_152448223_152450081_152450200_152450350_152450462_152453237_152453411_152472075_152472161_152491032
transcript_6122.known	chr10	+	680	3	FSM	ENSMUSG00000061759.16	ENSMUST00000117489.8	680	3	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_2	3	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCAGCAAATAGAAATAATC	NA	False	NA	NA	False	AATAAA	-23	NA	4382619	4389973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_4382712_4384827_4384934_4389491
transcript_61224.known	chr3	+	1097	7	FSM	ENSMUSG00000039047.18	ENSMUST00000051510.9	1097	7	0	0	0	0	multi-exon	FALSE	canonical	2	24	junction_1	130.010256005696	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGGTTTGTGTGTGCTGTC	NA	False	NA	33	True	AGTAAA	-37	NA	152443898	152491485	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_152443959_152448125_152448223_152450081_152450200_152450350_152450462_152453237_152453411_152472075_152472161_152491032
transcript_61233.nnic	chr3	-	2357	3	NNC	ENSMUSG00000052544.10	novel	416	3	NA	NA	-134278	1899	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	46	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGAGCGTTGTTTTCTCTC	NA	False	NA	-4	True	AATAAA	-24	NA	153065698	152909103	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr3_-_152911229_152912254_152912363_153065574
transcript_61241.known	chr3	-	1775	10	FSM	ENSMUSG00000038975.15	ENSMUST00000196565.5	1775	10	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_9	304.412366517671	2095	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGCTGTTGTGTATATAG	6116	False	NA	-6	True	AATAAA	-42	NA	153618630	153612929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618254
transcript_61249.known	chr3	-	1399	10	FSM	ENSMUSG00000038975.15	ENSMUST00000198350.5	1399	10	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_9	303.195735987477	3691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTTGTGTATATAGCT	6182	False	NA	-4	True	AATAAA	-44	NA	153618564	153612927	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618550
transcript_6125.nic	chr10	+	1032	5	ISM	ENSMUSG00000019767.13	ENSMUST00000138112.8	3350	11	-22	41125	-22	6794	5prime_fragment	FALSE	canonical	2	4	junction_1	3.41869858279434	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTGTTTGTTTGTTTGT	3185	False	NA	NA	False	ATTAAA	-18	NA	4432479	4471106	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_4432629_4462751_4462881_4464055_4464313_4468905_4469051_4470754
transcript_61250.known	chr3	-	1381	9	FSM	ENSMUSG00000038975.15	ENSMUST00000089950.11	1381	9	0	0	0	0	multi-exon	FALSE	canonical	3	355	junction_5	268.62508724987	7093	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6100	False	NA	-2	True	AATAAA	-15	NA	153618646	153612925	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561_153617670_153618570
transcript_61251.known	chr3	-	1169	9	FSM	ENSMUSG00000038975.15	ENSMUST00000200209.5	1169	9	0	0	0	0	multi-exon	FALSE	canonical	3	607	junction_3	165.057565715722	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAATTACTGCTGTATTT	7028	False	NA	NA	False	NA	NA	NA	153617718	153613208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561
transcript_61252.known	chr3	-	2047	12	FSM	ENSMUSG00000062908.13	ENSMUST00000072697.13	2047	12	0	0	0	0	multi-exon	TRUE	canonical	3	875	junction_11	59.2580851965116	8974	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTCTGACTCTCCAGG	NA	False	NA	-6	True	AATAAA	-16	NA	153650269	153627993	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_153628640_153631301_153631551_153635167_153635264_153635853_153635995_153638663_153638773_153641931_153642063_153643339_153643421_153644190_153644292_153644533_153644604_153644706_153644805_153647519_153647608_153650032
transcript_61253.known	chr3	-	437	2	FSM	ENSMUSG00000062908.13	ENSMUST00000135724.2	437	2	0	0	0	0	multi-exon	FALSE	canonical	3	875	junction_1	0	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATTAACTGTAACATAC	161	False	NA	NA	False	AATAAA	-28	NA	153650100	153647238	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_153647608_153650032
transcript_61255.known	chr3	-	4490	6	FSM	ENSMUSG00000047583.10	ENSMUST00000052774.8	4490	6	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_2	5.35163526410386	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTATAAGCCTTAAAAGCAC	NA	False	NA	91	True	NA	NA	NA	154302732	154282067	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_154285929_154293113_154293248_154296720_154296793_154299353_154299453_154300090_154300172_154302489
transcript_61257.known	chr3	-	4270	5	FSM	ENSMUSG00000047583.10	ENSMUST00000170461.8	4270	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	28.314086600136	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTCTGTTCTGTTGCAG	NA	False	NA	2	True	AATAAA	-20	NA	154302735	154282156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_154285929_154296720_154296793_154299353_154299453_154300090_154300172_154302489
transcript_61261.known	chr3	+	1059	9	FSM	ENSMUSG00000028199.19	ENSMUST00000194876.6	1059	9	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	25.4447931805311	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGAGTATCCATTGGAGA	NA	False	NA	NA	False	AATAGA	-28	NA	154302780	154327804	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_154302922_154310528_154310653_154312015_154312169_154317046_154317211_154319458_154319511_154324096_154324247_154327117_154327226_154327315_154327412_154327733
transcript_61262.known	chr3	-	3518	4	FSM	ENSMUSG00000053870.8	ENSMUST00000066568.6	3518	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	2.16024689946929	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGAAATTTTTGTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	154799040	154790554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_154793707_154795748_154795842_154797027_154797196_154798935
transcript_61266.known	chr3	+	2148	3	FSM	ENSMUSG00000028182.15	ENSMUST00000195418.6	2148	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTGTACCTCAATGCCA	2785	False	NA	NA	False	AATATA	-19	NA	154799070	154808263	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_154799308_154804341_154804591_154806601
transcript_61268.known	chr3	-	661	2	FSM	ENSMUSG00000105834.2	ENSMUST00000196791.2	661	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAATAGTGTGTGTTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	157239727	157233151	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_157233732_157239646
transcript_61269.known	chr3	+	2737	11	FSM	ENSMUSG00000028180.19	ENSMUST00000106057.8	2737	11	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_9	297.644569915193	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGCTCTGACTGAATGTT	NA	False	NA	3	True	AATAAA	-11	NA	157240024	157254013	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_157240112_157241970_157242024_157242114_157242224_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157247507_157248794_157248882_157250600_157250760_157251711_157251787_157252311
transcript_61278.known	chr3	+	2924	10	FSM	ENSMUSG00000028180.19	ENSMUST00000106058.8	2924	10	0	0	0	0	multi-exon	TRUE	canonical	3	697	junction_8	81.8057017542553	872	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTTTTTTTGTCACTGT	NA	False	NA	37	True	AATAAA	-45	NA	157239796	157254047	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_157240112_157241970_157242024_157242114_157242224_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157247507_157248794_157248882_157250600_157250760_157252311
transcript_61289.known	chr3	+	2542	9	FSM	ENSMUSG00000028180.19	ENSMUST00000184802.8	2542	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	274.019815661204	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTATCAAGTGTTGTTTAT	NA	False	NA	11	True	AATAAA	-12	NA	157239995	157253973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_157240112_157241970_157242024_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157247507_157248794_157248882_157250600_157250760_157252311
transcript_61299.known	chr3	-	410	1	FSM	ENSMUSG00000104862.2	ENSMUST00000200636.2	410	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACTTGTGTGCATGTTTT	NA	False	NA	NA	False	AAGAAA	-9	NA	157594511	157594101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_157594100_157594500
transcript_61308.known	chr3	-	675	3	FSM	ENSMUSG00000028179.13	ENSMUST00000129805.2	675	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	531.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGTGGTTTTTTTTTGA	NA	False	NA	-18	True	ATTAAA	-19	NA	157603349	157600059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_157600465_157602828_157602968_157603218
transcript_61310.known	chr3	-	1815	12	FSM	ENSMUSG00000028179.13	ENSMUST00000118539.2	1815	12	0	0	0	0	multi-exon	FALSE	canonical	3	948	junction_5	60.9754048777046	3822	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCCCTGATCCTACTTT	NA	False	NA	-16	True	AATAAA	-18	NA	157630714	157599884	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_157600465_157602828_157602968_157610781_157610835_157611819_157611942_157612956_157613110_157614535_157614614_157616519_157616578_157619236_157619369_157624062_157624173_157625653_157625750_157626591_157626674_157630502
transcript_61317.known	chr3	-	3106	13	FSM	ENSMUSG00000055436.19	ENSMUST00000121326.8	3106	13	0	0	0	0	multi-exon	TRUE	canonical	3	316	junction_12	95.9239788698437	582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTGAGTAACTTTTTAAA	NA	False	NA	0	True	ATTAAA	-38	NA	157742276	157716109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_157717841_157717946_157718086_157718416_157718513_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088_157737286_157742152
transcript_61318.known	chr3	-	1643	13	FSM	ENSMUSG00000055436.19	ENSMUST00000069025.14	1643	13	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_3	173.80710492446	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAAAGCTATAAAGTGGTA	NA	False	NA	NA	False	NA	NA	NA	157742188	157717505	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_157717841_157717946_157718086_157718416_157718534_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088_157737286_157742152
transcript_61321.known	chr3	-	2654	12	FSM	ENSMUSG00000055436.19	ENSMUST00000072875.15	2654	12	0	0	0	0	multi-exon	FALSE	canonical	3	573	junction_1	36.7913482463625	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATGCTTCTGTAGAGCTG	NA	False	NA	-27	True	AATAAA	-17	NA	157737403	157716555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_157717841_157717946_157718086_157718416_157718513_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088
transcript_61338.nic	chr3	-	1067	9	ISM	ENSMUSG00000055436.19	ENSMUST00000069025.14	1643	13	-105	4453	-17	0	5prime_fragment	FALSE	canonical	3	316	junction_8	116.256115430544	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACGTTTGTGCAAAGCAGA	NA	False	NA	-2	True	NA	NA	NA	157742293	157721958	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_-_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088_157737286_157742152
transcript_61343.nic	chr3	-	646	4	ISM	ENSMUSG00000055436.19	ENSMUST00000126716.9	940	9	-60	4667	-17	-649	5prime_fragment	FALSE	canonical	3	21	junction_1	272.060042392606	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTAGTTTAATTGTATTA	NA	False	NA	NA	False	NA	NA	NA	157742293	157729694	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_-_157729869_157732361_157732496_157737088_157737286_157742152
transcript_61345.known	chr3	-	930	2	FSM	ENSMUSG00000055436.19	ENSMUST00000197292.2	930	2	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCAGCCAAATTTTGGTGG	NA	False	NA	NA	False	AGTAAA	-3	NA	157742251	157736454	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_157737286_157742152
transcript_61346.known	chr3	-	1570	1	FSM	ENSMUSG00000055436.19	ENSMUST00000199742.2	1570	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	157737391	157735821	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_157735800_157737400
transcript_61347.known	chr3	-	642	2	FSM	ENSMUSG00000055436.19	ENSMUST00000196034.2	642	2	0	0	0	0	multi-exon	FALSE	canonical	3	686	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTTTTTGCTATCTTTAA	NA	False	NA	NA	False	AATAAA	-20	NA	157737397	157732162	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_-_157732496_157737088
transcript_61348.known	chr3	+	2450	13	FSM	ENSMUSG00000063052.10	ENSMUST00000156597.8	2450	13	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	215.046296694973	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGTATAGTGTTTTTGTT	NA	False	NA	29	True	AATAAA	-44	NA	157742336	157772726	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_157742514_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
transcript_6135.known	chr10	-	1940	5	FSM	ENSMUSG00000019773.8	ENSMUST00000019907.8	1940	5	0	0	0	0	multi-exon	FALSE	canonical	3	762	junction_1	15.5623744974859	1362	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGATGTGTGCAGGTTTTT	NA	False	NA	-9	True	AATAAA	-45	NA	5755600	5749159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_5749823_5750255_5750436_5751151_5751243_5751868_5752533_5755258
transcript_61350.nic	chr3	+	2320	12	NIC	ENSMUSG00000063052.10	novel	2450	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	239.919235721985	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGTATAGTGTTTTTGTT	NA	False	NA	29	True	AATAAA	-44	NA	157742336	157772726	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_+_157742514_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
transcript_61352.known	chr3	+	4142	15	FSM	ENSMUSG00000063052.10	ENSMUST00000072080.10	4142	15	0	0	0	0	multi-exon	TRUE	canonical	3	641	junction_2	81.4479926714224	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTCTGTAGTGTGTTTGT	NA	False	NA	NA	False	AATAAA	-24	NA	157742298	157774124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_157742514_157746077_157746260_157747222_157747297_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
transcript_61353.known	chr3	+	2701	15	FSM	ENSMUSG00000063052.10	ENSMUST00000150525.8	2701	15	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	284.951275820686	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGTATAGTGTTTTTGTT	NA	False	NA	29	True	AATAAA	-44	NA	157742338	157772726	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_157742514_157746077_157746260_157747499_157747571_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
transcript_61354.known	chr3	+	2920	12	FSM	ENSMUSG00000028175.16	ENSMUST00000029825.14	2920	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	20.9260800544746	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATTGGACTTTGGTTTA	NA	False	NA	NA	False	TATAAA	-21	NA	159201087	159235213	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_159201204_159204000_159204267_159219811_159219969_159221141_159221264_159221650_159221782_159222539_159222588_159226466_159226608_159228162_159228994_159229413_159229587_159232167_159232345_159233580_159233767_159234641
transcript_61356.known	chr3	+	1971	11	FSM	ENSMUSG00000028175.16	ENSMUST00000106041.3	1971	11	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_7	17.3262806164508	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATTGCTTCTTTATTTAT	NA	False	NA	NA	False	AAAACA	-43	NA	159201094	159235096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_159201204_159204000_159204267_159219811_159219969_159221141_159221264_159221650_159221782_159222539_159222588_159226466_159226608_159229413_159229587_159232167_159232345_159233580_159233767_159234635
transcript_61362.nic	chr3	+	809	4	ISM	ENSMUSG00000028175.16	ENSMUST00000106041.3	1971	11	-48	13726	-23	-13726	5prime_fragment	FALSE	canonical	3	57	junction_3	8.5764535535124	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTTAAATATGCATTATG	NA	False	NA	NA	False	AATAAA	-22	NA	159201046	159221370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr3_+_159201204_159204000_159204267_159219811_159219969_159221141
transcript_61364.nic	chr3	+	2174	14	NIC	ENSMUSG00000028173.11	novel	2050	13	NA	NA	22	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	12.328828005938	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTATTATTTCCGTTTAT	NA	False	NA	NA	False	NA	NA	NA	159545330	159644300	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr3_+_159545685_159554201_159554283_159578545_159578819_159602967_159603093_159607018_159607181_159612751_159612889_159615289_159615459_159616934_159617033_159617396_159617461_159619397_159619542_159620572_159620657_159629062_159629217_159639886_159640006_159644090
transcript_61365.known	chr3	+	2050	13	FSM	ENSMUSG00000028173.11	ENSMUST00000198878.2	2050	13	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_12	7.78888096369861	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTATTATTTCCGTTTAT	NA	False	NA	NA	False	NA	NA	NA	159545373	159644300	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_159545685_159578545_159578819_159602967_159603093_159607018_159607181_159612751_159612889_159615289_159615459_159616934_159617033_159617396_159617461_159619397_159619542_159620572_159620657_159629062_159629217_159639886_159640006_159644090
transcript_61366.known	chr3	+	3559	12	FSM	ENSMUSG00000028173.11	ENSMUST00000068952.10	3559	12	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_6	6.38697020736374	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAATGGAGTGAGGTGTC	NA	False	NA	NA	False	AATAAA	-29	NA	159545308	159641659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr3_+_159545685_159578545_159578819_159602967_159603093_159607018_159607181_159612751_159612889_159615289_159615459_159616934_159617033_159617396_159617461_159619397_159619542_159620572_159620657_159629062_159629217_159639886
transcript_61370.known	chr4	-	2773	9	FSM	ENSMUSG00000028232.14	ENSMUST00000154922.8	2773	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	30.0083321762473	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAGAAAACTATTTTTGG	-11	True	NA	NA	False	AATAAA	-14	NA	3574809	3549040	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_3550580_3551751_3551892_3554353_3554415_3560498_3560693_3562019_3562147_3564092_3564258_3569363_3569753_3570320_3570373_3574703
transcript_61374.known	chr4	-	2690	8	FSM	ENSMUSG00000028232.14	ENSMUST00000029891.12	2690	8	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_4	11.6233403467474	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAGAAAACTATTTTTGG	280	False	NA	NA	False	AATAAA	-14	NA	3574853	3549040	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_3550580_3551751_3551892_3554353_3554415_3560498_3560693_3564092_3564258_3569363_3569753_3570320_3570373_3574703
transcript_61377.nic	chr4	-	1530	5	ISM	ENSMUSG00000028232.14	ENSMUST00000029891.12	2690	8	-5	10883	-5	9419	5prime_fragment	FALSE	canonical	3	50	junction_1	9.93415824315276	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTACTGTAGATAATTGC	275	False	NA	NA	False	AATAAA	-18	NA	3574858	3559923	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_3560693_3564092_3564258_3569363_3569753_3570320_3570373_3574703
transcript_61378.known	chr4	+	4327	13	FSM	ENSMUSG00000028233.7	ENSMUST00000052712.6	4327	13	0	0	0	0	multi-exon	FALSE	canonical	2	97	junction_11	33.5186515241887	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAATTTTGTTTTATTTTT	-18	True	NA	11	True	NA	NA	NA	3574874	3616619	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_3575130_3583424_3583490_3585030_3585189_3585451_3586266_3589146_3589265_3591227_3591315_3593459_3593638_3595356_3595658_3598513_3598664_3602146_3602291_3604698_3604916_3605822_3605902_3614858
transcript_61383.nic	chr4	+	820	4	ISM	ENSMUSG00000028233.7	ENSMUST00000052712.6	4327	13	-291	31117	-291	1571	5prime_fragment	FALSE	canonical	3	157	junction_3	13.1402688962847	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCAGAAGCGGTATTTAGA	NA	False	NA	NA	False	AATAAA	-28	NA	3574583	3585502	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_3575130_3583424_3583490_3585030_3585189_3585451
transcript_61387.known	chr4	+	3387	13	FSM	ENSMUSG00000042228.15	ENSMUST00000103010.4	3387	13	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	11.3023473471468	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCCATCTTGTCTTACTT	5	True	NA	NA	False	ACTAAA	-17	NA	3678126	3791612	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_3678365_3738724_3738799_3742441_3742488_3743196_3743303_3745317_3745417_3745522_3745627_3746710_3746861_3748660_3748814_3756300_3756484_3758245_3758323_3780912_3781067_3782972_3783105_3789741
transcript_61389.known	chr4	+	3463	13	FSM	ENSMUSG00000042228.15	ENSMUST00000041377.13	3463	13	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	7.08823359911026	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCATCTTGTCTTACTTC	-7	True	NA	NA	False	ACTAAA	-18	NA	3678114	3791613	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_3678365_3738724_3738862_3742441_3742488_3743196_3743303_3745317_3745417_3745522_3745627_3746710_3746861_3748660_3748814_3756300_3756484_3758245_3758323_3780912_3781067_3782972_3783105_3789741
transcript_6141.known	chr10	-	2588	7	FSM	ENSMUSG00000019774.9	ENSMUST00000019908.9	2588	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	9.49853789918334	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAATTAACCATTATGGT	NA	False	NA	NA	False	AATAAA	-15	NA	5773910	5761886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_5763407_5764040_5764178_5765551_5765670_5767448_5767613_5768800_5768985_5770024_5770105_5773525
transcript_6142.nnic	chr10	-	1084	7	NNC	ENSMUSG00000019774.9	novel	2588	7	NA	NA	-159	153	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_4	8.85061203156784	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGACAGTTGTTTTATGC	NA	False	NA	-2	True	TATAAA	-19	NA	5773705	5763058	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_5763407_5764040_5764178_5765551_5765670_5767448_5767613_5768927_5768985_5770024_5770105_5773525
transcript_61424.known	chr4	-	582	3	FSM	ENSMUSG00000028234.7	ENSMUST00000103009.5	582	3	0	0	0	0	multi-exon	FALSE	canonical	3	6653	junction_2	831.5	6357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTTGCTGGCTTTTGTT	110	False	NA	-40	True	AATAAA	-15	NA	3835488	3834472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_3834684_3834935_3835010_3835191
transcript_61425.known	chr4	-	512	2	FSM	ENSMUSG00000028234.7	ENSMUST00000130128.2	512	2	0	0	0	0	multi-exon	FALSE	canonical	3	8316	junction_1	0	4965	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCTGGCTTTTGTTCAG	365	False	NA	-37	True	AATAAA	-18	NA	3835233	3834469	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_3834684_3834935
transcript_61426.known	chr4	-	1449	1	FSM	ENSMUSG00000078365.6	ENSMUST00000105158.2	1449	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAAGTGCTTTTCCTAA	3131	False	NA	NA	False	AATAAA	-17	NA	3872105	3870656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_3870700_3872100
transcript_61433.known	chr4	+	620	5	FSM	ENSMUSG00000042198.13	ENSMUST00000121651.8	620	5	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	167.916645988419	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAACATGTTTTGGGGTTT	-5	True	NA	23	True	ATTAAA	-16	NA	3938913	3943521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_3939132_3939423_3939527_3941245_3941312_3942720_3942820_3943387
transcript_61436.known	chr4	+	381	4	FSM	ENSMUSG00000042198.13	ENSMUST00000121110.8	381	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	200.984244821993	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGGGGTTTTTTTTTG	NA	False	NA	30	True	ATTAAA	-23	NA	3938887	3943528	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_3938963_3941245_3941312_3942720_3942820_3943387
transcript_61439.known	chr4	+	672	5	FSM	ENSMUSG00000042198.13	ENSMUST00000041122.11	672	5	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_1	68.1762421962372	3885	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGGGGTTTTTTTTTG	-5	True	NA	30	True	ATTAAA	-23	NA	3938913	3943528	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_3939132_3939378_3939527_3941245_3941312_3942720_3942820_3943387
transcript_6144.known	chr10	-	8107	5	FSM	ENSMUSG00000019775.18	ENSMUST00000131996.8	8107	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.433012701892219	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTGGTGTCTTAAAAGTG	NA	False	NA	NA	False	AATAAA	-15	NA	5872386	5775662	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_5783142_5791271_5791507_5792535_5792626_5812518_5812663_5872227
transcript_61440.known	chr4	+	524	5	FSM	ENSMUSG00000042198.13	ENSMUST00000108386.8	524	5	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	133.401649165218	1015	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATGTTTTGGGGTTTTT	NA	False	NA	25	True	ATTAAA	-18	NA	3938887	3943523	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_3938963_3939378_3939527_3941245_3941312_3942720_3942820_3943387
transcript_61441.known	chr4	+	426	5	FSM	ENSMUSG00000042198.13	ENSMUST00000149544.8	426	5	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	158.419537936455	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAAAAGATGCCCTACTGA	NA	False	NA	-26	True	NA	NA	NA	3938889	3943472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_3938963_3939423_3939527_3941245_3941312_3942720_3942820_3943387
transcript_61442.known	chr4	+	711	6	FSM	ENSMUSG00000042198.13	ENSMUST00000120732.8	711	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	192.067279878693	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGGGGTTTTTTTTTG	-5	True	NA	30	True	ATTAAA	-23	NA	3938913	3943528	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_3939132_3939378_3939527_3941245_3941312_3942720_3942820_3942987_3943027_3943387
transcript_61443.known	chr4	+	889	4	FSM	ENSMUSG00000042198.13	ENSMUST00000119307.8	889	4	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_3	14.7271480229163	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTTTCTATAACTTGA	1	True	NA	6	True	NA	NA	NA	3938919	3943504	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_3939527_3941245_3941312_3942720_3942820_3943387
transcript_61444.known	chr4	+	279	2	FSM	ENSMUSG00000042198.13	ENSMUST00000128829.2	279	2	0	0	0	0	multi-exon	FALSE	canonical	3	452	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATATTCCTGGCCAGTG	20	False	NA	NA	False	AATAAA	-16	NA	3939421	3941419	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_3939527_3941245
transcript_61445.known	chr4	-	504	1	FSM	ENSMUSG00000068240.6	ENSMUST00000089430.6	504	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	58130	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTATCCAAGGCTACATC	6	True	NA	NA	False	AATAAA	-41	NA	3973595	3973091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_3973100_3973600
transcript_61446.known	chr4	-	721	3	FSM	ENSMUSG00000045573.10	ENSMUST00000133567.2	721	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	3.5	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGACGAAGACATGAGCAA	3	True	NA	NA	False	NA	NA	NA	4138819	4134111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_4134508_4138005_4138146_4138634
transcript_61447.known	chr4	+	618	4	FSM	ENSMUSG00000049119.15	ENSMUST00000124256.8	618	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	25.9272486435067	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAACGGCCTGGAAGGGGA	-17	True	NA	NA	False	ATTAAA	-31	NA	5644089	5798382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_5644411_5678902_5678999_5729570_5729658_5798268
transcript_61449.known	chr4	+	3210	3	FSM	ENSMUSG00000049119.15	ENSMUST00000054857.13	3210	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	17	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGCTGATTTCTTTGTC	14	True	NA	12	True	AATAAA	-21	NA	5644120	5801101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_5644411_5729570_5729658_5798268
transcript_61453.known	chr4	+	6642	8	FSM	ENSMUSG00000028243.6	ENSMUST00000029907.6	6642	8	0	0	0	0	multi-exon	TRUE	canonical	3	103	junction_2	16.4614577676685	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCGTGCCTCAGTGTGAC	-10	True	NA	22	True	AATAAA	-24	NA	6191097	6221688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_6191214_6196410_6196515_6202291_6202443_6203776_6203861_6204563_6204674_6208805_6208944_6214638_6214801_6215911
transcript_61455.known	chr4	+	2086	9	FSM	ENSMUSG00000028249.16	ENSMUST00000103008.12	2086	9	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_4	110.946425697271	1257	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCGTCTGTCTGTGCCTG	-5	True	NA	13	True	ATTAAA	-18	NA	6365676	6395655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_6365760_6377076_6377143_6378965_6379048_6380989_6381100_6385028_6385188_6386532_6386709_6392945_6393118_6393636_6393729_6394509
transcript_61459.known	chr4	-	3853	9	FSM	ENSMUSG00000041261.10	ENSMUST00000066674.8	3853	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	2.31503239718152	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATGTTGCTTTGATGATG	-1	True	NA	NA	False	AATAAA	-23	NA	8239041	8143361	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_8146217_8169595_8169766_8183252_8183366_8184583_8184633_8185575_8185639_8189296_8189393_8221549_8221675_8237918_8238111_8238851
transcript_6146.known	chr10	+	114	1	FSM	ENSMUSG00000081926.2	ENSMUST00000121411.2	114	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	295	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGACTCTGGCCAATGCCC	2119	False	NA	NA	False	NA	NA	NA	6988660	6988774	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_6988700_6988800
transcript_61464.nnic	chr4	-	1135	9	NNC	ENSMUSG00000041261.10	novel	3853	9	NA	NA	-49	-20275	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	10.4095809233609	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATTTTTTCTTGGTCT	NA	False	NA	NA	False	AATAAA	-15	NA	8239090	8163636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_8163725_8169595_8169766_8183252_8183366_8184583_8184633_8185575_8185639_8189296_8189393_8221549_8221675_8237918_8238111_8238851
transcript_6147.known	chr10	-	3447	13	FSM	ENSMUSG00000015202.14	ENSMUST00000015346.12	3447	13	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_10	5.32812245438193	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTGGGATTTTATGAATT	NA	False	NA	-4	True	AATAAA	-11	NA	7162237	7069062	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_7070587_7076094_7076185_7076634_7076844_7079022_7079148_7084521_7084669_7085047_7085117_7088354_7088415_7090318_7090439_7092960_7093003_7102863_7102952_7104282_7104486_7110643_7110808_7161631
transcript_61477.nnic	chr4	-	1001	3	Genic_Genomic	ENSMUSG00000082151.4	novel	333	1	NA	NA	-11031	33	multi-exon	TRUE	non_canonical	0	0	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATTATTCGGTTTAATTT	NA	False	NA	NA	False	AATAAA	-14	NA	8467529	8456132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr4_-_8456571_8461396_8461807_8467376
transcript_61478.nnic	chr4	+	1011	3	Antisense	novelGene_ENSMUSG00000082151.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAACTGGTCTTCTGGAC	NA	False	NA	NA	False	ATTAAA	-13	NA	8456135	8467529	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr4_+_8456633_8461445_8461807_8467376
transcript_6148.known	chr10	-	3815	6	FSM	ENSMUSG00000079685.11	ENSMUST00000177585.9	3815	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	15.4324333790883	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAGAAGAAAGAGGAGAGA	NA	False	NA	NA	False	NA	NA	NA	7423638	7393037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_7395698_7396417_7396553_7397380_7397485_7406339_7406616_7406953_7407209_7423253
transcript_61481.known	chr4	-	6694	24	FSM	ENSMUSG00000028207.19	ENSMUST00000078139.13	6694	24	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_21	108.084473020543	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGAATGTTTTGTGTTTT	NA	False	NA	NA	False	AATAAA	-30	NA	9669162	9449078	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_9453446_9474897_9475032_9475389_9475482_9484471_9484608_9508626_9508765_9514588_9514679_9517635_9517735_9529885_9530023_9531914_9532066_9537678_9537766_9542224_9542311_9583811_9583857_9594662_9594699_9595376_9595416_9598268_9598302_9598732_9598781_9601306_9601364_9602468_9602502_9604515_9604630_9607796_9607872_9610842_9610939_9635900_9635970_9639197_9639348_9668780
transcript_61483.known	chr4	-	2884	14	FSM	ENSMUSG00000028207.19	ENSMUST00000084915.11	2884	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	124.875606744325	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTAGATTGTCATTATTTT	NA	False	NA	-4	True	AATAAA	-17	NA	9669162	9575266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_9576974_9583811_9583857_9594662_9594699_9595376_9595416_9598268_9598302_9598732_9598781_9601306_9601364_9602468_9602502_9604515_9604630_9607796_9607872_9610842_9610939_9635900_9635970_9639197_9639348_9668780
transcript_61486.known	chr4	-	2836	13	FSM	ENSMUSG00000028207.19	ENSMUST00000108337.8	2836	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	142.503411265212	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTAGATTGTCATTATTTT	NA	False	NA	-4	True	AATAAA	-17	NA	9669162	9575266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_9576974_9583811_9583857_9594662_9594699_9595376_9595416_9598268_9598302_9601306_9601364_9602468_9602502_9604515_9604630_9607796_9607872_9610842_9610939_9635900_9635970_9639197_9639348_9668780
transcript_61487.known	chr4	-	1007	4	FSM	ENSMUSG00000028207.19	ENSMUST00000098275.9	1007	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	212.653604614536	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCTTGGCTCCCTCCACAC	NA	False	NA	NA	False	NA	NA	NA	9669162	9630546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_9630953_9635900_9635970_9639197_9639348_9668780
transcript_61488.known	chr4	-	506	2	FSM	ENSMUSG00000028207.19	ENSMUST00000130617.2	506	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGTACTATAGGGATTT	4	True	NA	NA	False	AATACA	-11	NA	9669086	9668312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_9668513_9668780
transcript_61490.known	chr4	+	636	1	FSM	ENSMUSG00000066315.10	ENSMUST00000120234.2	636	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10724	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTGGAGAGTTGCA	20	False	NA	NA	False	AAAAAG	-44	NA	10848419	10849055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_10848400_10849100
transcript_61491.known	chr4	+	2116	6	FSM	ENSMUSG00000059482.16	ENSMUST00000080517.14	2116	6	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_4	10.0079968025574	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTATGTCTCTGTGCAA	NA	False	NA	11	True	AATAAA	-15	NA	10874497	10899421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_10874773_10879522_10879611_10881800_10881869_10882406_10882473_10893262_10893359_10897898
transcript_61492.nic	chr4	+	2024	6	NIC	ENSMUSG00000059482.16	novel	2116	6	NA	NA	13	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	50.5885362508148	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTATGTCTCTGTGCAA	-6	True	NA	11	True	AATAAA	-15	NA	10874510	10899421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_10874694_10879522_10879611_10881800_10881869_10882406_10882473_10893262_10893359_10897898
transcript_61494.known	chr4	+	486	1	FSM	ENSMUSG00000081715.2	ENSMUST00000117608.2	486	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAATAAAGTTATTTTCC	16	False	NA	NA	False	NA	NA	NA	10946607	10947093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_10946600_10947100
transcript_61495.known	chr4	-	2977	2	FSM	ENSMUSG00000049969.4	ENSMUST00000054776.4	2977	2	0	0	0	0	multi-exon	FALSE	canonical	3	844	junction_1	0	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGTGTTTTTATATTG	NA	False	NA	-1	True	AATAAA	-17	NA	11007676	10988661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_10991355_11007392
transcript_61500.known	chr4	-	863	9	FSM	ENSMUSG00000050323.15	ENSMUST00000126468.8	863	9	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_7	109.001146782958	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTACTTAAAGAAAATCCAG	36	False	NA	NA	False	NA	NA	NA	11076149	11051212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_11051226_11053431_11053489_11059011_11059114_11060860_11060995_11062049_11062153_11066650_11066708_11070199_11070323_11073139_11073244_11075979
transcript_61501.nic	chr4	-	1063	9	NIC	ENSMUSG00000050323.15	novel	1082	9	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_7	102.543588292979	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTGTGGTCTGAGTTTT	NA	False	NA	-3	True	TTTAAA	-3	NA	11076228	11051044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_11051226_11053431_11053489_11059011_11059114_11060860_11060995_11062049_11062153_11066650_11066708_11070199_11070323_11073186_11073244_11075979
transcript_61502.nic	chr4	-	1053	8	NIC	ENSMUSG00000050323.15	novel	1082	9	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_6	137.492263233171	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTGTGGTCTGAGTTTT	NA	False	NA	-3	True	TTTAAA	-3	NA	11076228	11051044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_11051226_11053431_11053489_11059011_11059114_11060860_11060995_11062049_11062153_11070199_11070323_11073139_11073244_11075979
transcript_61507.known	chr4	-	1082	9	FSM	ENSMUSG00000050323.15	ENSMUST00000058183.9	1082	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	119.468549731718	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTGTGGTCTGAGTTTT	-19	True	NA	-3	True	TTTAAA	-3	NA	11076204	11051044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_11051226_11053431_11053489_11059011_11059114_11060860_11060995_11062049_11062153_11066650_11066708_11070199_11070323_11073143_11073244_11075979
transcript_61509.known	chr4	+	5432	5	FSM	ENSMUSG00000028211.12	ENSMUST00000132010.8	5432	5	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_4	77.6997425993163	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTGGAGGATTCTTTTAT	8	True	NA	16	True	AATAAA	-17	NA	11156440	11174379	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_11156548_11164310_11164570_11165089_11165448_11167896_11167935_11169709
transcript_61512.known	chr4	+	5404	4	FSM	ENSMUSG00000028211.12	ENSMUST00000029865.4	5404	4	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_3	56.8409085860605	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTGGAGGATTCTTTTAT	-2	True	NA	16	True	AATAAA	-17	NA	11156430	11174379	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_11156548_11164310_11164570_11165089_11165448_11169709
transcript_61518.known	chr4	+	3006	12	FSM	ENSMUSG00000028212.17	ENSMUST00000170901.8	3006	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	77.194291742887	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACTACAGAAAAAAATG	NA	False	NA	NA	False	NA	NA	NA	11191353	11204675	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_11191545_11192680_11192718_11192814_11192912_11192992_11193047_11193925_11194078_11195019_11195156_11197152_11197300_11198728_11198825_11199296_11199432_11201304_11201417_11202189_11202348_11202984
transcript_61519.known	chr4	+	2908	12	FSM	ENSMUSG00000028212.17	ENSMUST00000108324.4	2908	12	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_1	27.8285779741998	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAGAAAAAAATGGCATCAC	309	False	NA	NA	False	NA	NA	NA	11191729	11204682	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_11191816_11192680_11192718_11192814_11192912_11192992_11193047_11193925_11194078_11195019_11195156_11197152_11197300_11198728_11198825_11199296_11199432_11201304_11201417_11202189_11202348_11202984
transcript_61522.nic	chr4	+	207	3	ISM	ENSMUSG00000028212.17	ENSMUST00000108324.4	2908	12	13	11771	7	-324	5prime_fragment	FALSE	canonical	3	208	junction_1	9.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGATTTAAGGAAAAAGAGG	322	False	NA	NA	False	AAGAAA	-39	NA	11191742	11192911	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_11191816_11192680_11192718_11192814
transcript_61523.known	chr4	+	432	6	FSM	ENSMUSG00000028212.17	ENSMUST00000147725.8	432	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	101.146626241314	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGGCAAAACATGTTACAA	315	False	NA	NA	False	NA	NA	NA	11191735	11195039	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_11191808_11192680_11192718_11192814_11192912_11192992_11193047_11193925_11194078_11195019
transcript_61524.known	chr4	-	6754	19	FSM	ENSMUSG00000045205.17	ENSMUST00000084892.12	6754	19	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_13	8.17176711475418	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAACTCGTACTTGATCTT	-10	True	NA	-9	True	AATAAA	-24	NA	11322137	11261314	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_11265943_11267612_11267772_11273006_11273140_11276863_11276947_11277928_11277986_11281003_11281125_11285053_11285174_11287474_11287634_11289669_11289744_11290190_11290290_11290390_11290523_11292553_11292689_11295935_11296060_11303311_11303458_11303946_11304069_11304299_11304391_11309365_11309491_11317072_11317181_11321999
transcript_61528.known	chr4	-	3696	14	FSM	ENSMUSG00000040728.16	ENSMUST00000108313.8	3696	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	3.1902217466658	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCGCACTCTTCTTCTTG	7117	False	NA	2	True	AATAAA	-21	NA	11386783	11331932	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_11333474_11353294_11353464_11357471_11357659_11359737_11359957_11360953_11361256_11365003_11365047_11365143_11365277_11365373_11365485_11366907_11366963_11367084_11367184_11379290_11379406_11384348_11384463_11385646_11385776_11386304
transcript_61530.known	chr4	+	6506	24	FSM	ENSMUSG00000040720.16	ENSMUST00000059914.13	6506	24	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_9	10.2468585254619	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATAAGTGTATGAGTCT	2	True	NA	NA	False	TATAAA	-29	NA	11485957	11550684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_11486106_11494763_11494880_11498739_11498827_11501308_11501358_11505441_11505611_11506953_11507077_11507906_11508180_11513027_11514169_11518925_11519415_11521104_11521260_11522852_11522936_11526346_11526441_11526594_11527140_11527647_11527884_11528537_11528791_11530827_11531046_11534188_11534322_11539909_11540063_11540480_11540642_11542106_11542204_11544830_11544998_11545968_11546301_11548730_11548875_11549544
transcript_61532.known	chr4	+	3954	13	FSM	ENSMUSG00000040720.16	ENSMUST00000055372.14	3954	13	0	0	0	0	multi-exon	TRUE	canonical	3	55	junction_9	7.54799458281617	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACACACATTATACTTTTT	2	True	NA	NA	False	AATAAA	-15	NA	11485957	11527621	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_11486106_11494763_11494880_11498739_11498827_11501308_11501358_11505441_11505611_11506953_11507077_11507906_11508180_11513027_11514169_11518925_11519415_11521104_11521260_11522852_11522936_11526346_11526441_11526594
transcript_61539.nnic	chr4	+	2854	15	NNC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	-59	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_12	83.7823955011932	87	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGTATCCTTAA	NA	False	NA	19	True	AGTAAA	-16	NA	11558862	11615805	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11610303_11610441_11612371_11612439_11612617_11612819_11615442
transcript_6154.known	chr10	-	1093	5	FSM	ENSMUSG00000079685.11	ENSMUST00000169796.4	1093	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	15.4333243340507	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTGGTCAGACTTTCAA	NA	False	NA	NA	False	CATAAA	-20	NA	7423341	7396182	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_7396553_7397380_7397485_7406339_7406616_7406953_7407209_7423253
transcript_61540.known	chr4	+	2870	15	FSM	ENSMUSG00000078773.12	ENSMUST00000070755.13	2870	15	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_12	66.7496464868725	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGTATCCTTAA	25	True	NA	19	True	AGTAAA	-16	NA	11558971	11615805	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11610303_11610566_11612371_11612439_11612617_11612819_11615442
transcript_61549.nnic	chr4	+	2717	14	NIC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	-59	0	combination_of_known_splicesites	FALSE	canonical	3	33	junction_11	83.7876295398391	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGTATCCTTAA	NA	False	NA	19	True	AGTAAA	-16	NA	11558862	11615805	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11612371_11612439_11612617_11612819_11615442
transcript_61552.nnic	chr4	+	2635	14	NIC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	-59	0	combination_of_known_splicesites	FALSE	canonical	3	27	junction_7	96.9667789143156	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGTATCCTTAA	NA	False	NA	19	True	AGTAAA	-16	NA	11558862	11615805	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601632_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11612371_11612439_11612617_11612819_11615442
transcript_61556.nnic	chr4	+	2507	13	NIC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	-59	-9	combination_of_known_splicesites	FALSE	canonical	3	33	junction_11	86.901724506607	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTTGCTTTCTTGTGTG	NA	False	NA	10	True	AGTAAA	-7	NA	11558862	11615796	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11612371_11612439_11615442
transcript_61564.nic	chr4	+	1950	8	ISM	ENSMUSG00000078773.12	ENSMUST00000070755.13	2870	15	-109	13576	-59	-3915	5prime_fragment	FALSE	canonical	3	154	junction_7	24.0458745241809	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTATTTCTGTGTTGTGTGT	NA	False	NA	NA	False	TTTAAA	-15	NA	11558862	11602229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550
transcript_61569.nnic	chr4	+	1081	5	NNC	ENSMUSG00000078773.12	novel	2403	4	NA	NA	8	-1414	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_4	91.7261549395809	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTCTTTTCTTAACCT	-17	True	NA	NA	False	TATAAA	-38	NA	11558929	11584330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_11559014_11563326_11563478_11569820_11569933_11578633_11578714_11583676
transcript_61570.nnic	chr4	+	2568	5	NNC	ENSMUSG00000078773.12	novel	2403	4	NA	NA	-59	6	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_4	91.7261549395809	92	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTGAATTTATGTTATG	NA	False	NA	NA	False	AATAAA	-15	NA	11558862	11585750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_11559014_11563326_11563478_11569820_11569933_11578633_11578714_11583676
transcript_61574.known	chr4	+	652	4	FSM	ENSMUSG00000078773.12	ENSMUST00000108306.9	652	4	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	82.7056359761668	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTACGTACGATACAGGTA	2	True	NA	NA	False	GATAAA	-13	NA	11558948	11578957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_11559014_11563326_11563478_11569820_11569933_11578633
transcript_61575.known	chr4	+	2403	4	FSM	ENSMUSG00000078773.12	ENSMUST00000095145.12	2403	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_3	85.9883713068226	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTATATATTGAATTTAT	-5	True	NA	NA	False	AATAAA	-9	NA	11558941	11585744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_11559014_11563326_11563478_11569820_11569933_11583676
transcript_6158.known	chr10	+	553	1	FSM	ENSMUSG00000112474.2	ENSMUST00000217912.2	553	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	702	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTCAGCATAAAATAAAGG	NA	False	NA	NA	False	AAGAAA	-33	NA	7408355	7408908	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_7408400_7408900
transcript_61581.known	chr4	+	2006	5	FSM	ENSMUSG00000028214.14	ENSMUST00000108304.9	2006	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2.17944947177034	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTCTGCTATCCTCCATG	10	False	NA	NA	False	AATAAA	-26	NA	11704456	11714752	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_11704567_11705904_11706242_11711138_11711216_11711969_11712175_11713475
transcript_61582.known	chr4	-	2588	3	FSM	ENSMUSG00000049225.15	ENSMUST00000108299.2	2588	3	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	3	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACTGCTATGTTTAATTC	-13	True	NA	NA	False	AATAAA	-20	NA	11966427	11959806	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_11962234_11965613_11965649_11966301
transcript_61583.known	chr4	-	4201	2	FSM	ENSMUSG00000049225.15	ENSMUST00000108297.3	4201	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTGAAATCTGGCTGTC	-38	True	NA	-7	True	AATAAA	-21	NA	11966452	11958183	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_11962234_11966301
transcript_61585.known	chr4	+	535	2	FSM	ENSMUSG00000085614.2	ENSMUST00000154194.2	535	2	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGCTTGCTTCAGAACAA	662	False	NA	NA	False	AATAAA	-15	NA	11966564	11994280	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_11966684_11993864
transcript_61588.known	chr4	-	3456	28	FSM	ENSMUSG00000049488.15	ENSMUST00000050686.10	3456	28	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_10	5.81280927905584	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTTTGCGTTATTGAT	4	True	NA	NA	False	AATAAA	-32	NA	12087957	12039354	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_12039893_12040634_12040778_12043464_12043568_12045794_12045900_12046002_12046120_12047197_12047315_12047809_12047891_12051387_12051529_12053446_12053587_12053674_12053775_12054745_12054833_12055030_12055130_12057315_12057415_12058520_12058578_12061754_12061861_12063034_12063159_12063673_12063831_12068867_12068934_12069413_12069492_12070236_12070346_12070448_12070604_12073893_12073957_12075454_12075530_12075622_12075693_12077335_12077436_12079874_12079969_12085911_12086001_12087714
transcript_61591.known	chr4	+	3327	4	FSM	ENSMUSG00000052137.12	ENSMUST00000063839.6	3327	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	21.6692306175267	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAAAATTGCTCTTGA	56	False	NA	-16	True	NA	NA	NA	12089440	12096243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_12089524_12089662_12089728_12092522_12092573_12093114
transcript_61592.nnic	chr4	+	3444	4	NNC	ENSMUSG00000052137.12	novel	3327	4	NA	NA	-65	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	20.6774165590278	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAAAATTGCTCTTGA	-11	True	NA	-16	True	NA	NA	NA	12089373	12096243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_12089506_12089662_12089796_12092522_12092573_12093114
transcript_61594.nnic	chr4	+	2965	4	NNC	ENSMUSG00000046667.15	novel	2949	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_1	14.7196014438797	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGTGGAAGAGAATTTCCT	-4	True	NA	NA	False	AATAAA	-18	NA	12140263	12146731	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_12140384_12140540_12140606_12143409_12143460_12144001
transcript_61596.known	chr4	+	2949	4	FSM	ENSMUSG00000046667.15	ENSMUST00000050069.9	2949	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	18.4089350286454	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAATTAAAAATAAAAAATAT	-1	True	NA	NA	False	TATAAA	-20	NA	12140266	12146700	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_12140402_12140540_12140606_12143409_12143460_12144001
transcript_61604.nnic	chr4	-	1172	8	NNC	ENSMUSG00000028218.20	novel	648	7	NA	NA	-2	52913	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_4	128.843204821098	654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACACAGTCTTTCTTTCAT	124	False	NA	NA	False	ATTAAA	-41	NA	12171873	12100495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_12100753_12155648_12155769_12157650_12157765_12164087_12164193_12168228_12168325_12168964_12169034_12170983_12171219_12171697
transcript_61611.known	chr4	-	1292	8	FSM	ENSMUSG00000028218.20	ENSMUST00000087052.11	1292	8	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	133.555614037061	1518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTACATAGTCTTTCTTTC	2	True	NA	-42	True	ATTAAA	-39	NA	12171995	12153723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_12153979_12155648_12155769_12157650_12157765_12164087_12164193_12168228_12168325_12168964_12169034_12170983_12171219_12171697
transcript_61619.known	chr4	-	3584	4	FSM	ENSMUSG00000028218.20	ENSMUST00000126808.8	3584	4	0	0	0	0	multi-exon	FALSE	canonical	3	350	junction_1	32.6019767635168	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAACTC	2	True	NA	NA	False	AATATA	-34	NA	12171995	12165342	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_12168325_12168964_12169034_12170983_12171219_12171697
transcript_61623.nnic	chr4	+	1232	3	Genic_Genomic	ENSMUSG00000060989.9	novel	1119	1	NA	NA	-52	692	multi-exon	TRUE	non_canonical	0	0	junction_2	2134.5	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAATAGCATTAAGATTAC	-4	True	NA	NA	False	AATAAA	-20	NA	12232780	12234643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr4_+_12232839_12232904_12233311_12233875
transcript_61645.known	chr4	+	1119	1	FSM	ENSMUSG00000060989.9	ENSMUST00000125165.2	1119	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	139	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAACAGAAACGGCTAC	28	False	NA	NA	False	NA	NA	NA	12232832	12233951	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_12232800_12234000
transcript_61647.known	chr4	+	888	5	FSM	ENSMUSG00000055963.13	ENSMUST00000143186.8	888	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	1.6393596310755	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAATATGTATTGCCAT	36	False	NA	NA	False	ACTAAA	-25	NA	12906837	12980873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_12906939_12917915_12918066_12962941_12963024_12974729_12974816_12980404
transcript_61648.known	chr4	+	3545	5	FSM	ENSMUSG00000055963.13	ENSMUST00000183345.2	3545	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	1.87082869338697	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGAATTTAGCATTTTTG	-3	True	NA	NA	False	AATAAA	-26	NA	12906857	12983553	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_12906939_12917915_12918066_12962944_12963024_12974729_12974816_12980404
transcript_61649.known	chr4	-	438	1	FSM	ENSMUSG00000083328.4	ENSMUST00000118781.2	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	958	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACATCCCATGCACGGCTT	40	False	NA	NA	False	AATACA	-33	NA	13483192	13482754	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_13482800_13483200
transcript_61650.nnic	chr4	-	634	3	Intergenic	novelGene_88	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCCTCTGTCTTCCAAC	NA	False	NA	NA	False	AATAAA	-18	NA	13668734	13609760	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr4_-_13610128_13666068_13666170_13668568
transcript_61651.known	chr4	-	2647	8	FSM	ENSMUSG00000040550.18	ENSMUST00000151012.3	2647	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	152.637492385169	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTGAAGTAATGTTATC	23	True	NA	-2	True	AATAAA	-12	NA	14826395	14810045	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_14811749_14812452_14812560_14815602_14815665_14818175_14818489_14819094_14819216_14822691_14822773_14825498_14825654_14826290
transcript_61652.known	chr4	-	3257	7	FSM	ENSMUSG00000040550.18	ENSMUST00000236953.2	3257	7	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_3	17.5752351019521	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATGTGTATATTCAAATT	-2	True	NA	0	True	AATAAA	-19	NA	14826587	14809506	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_14811749_14812452_14812560_14815602_14815665_14818175_14818489_14822691_14822773_14825498_14825654_14826290
transcript_61658.known	chr4	+	2339	7	FSM	ENSMUSG00000028221.4	ENSMUST00000029875.4	2339	7	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_4	16.4688257693808	548	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCAAAGAGAAAATGATAAAT	21	False	NA	-79	True	NA	NA	NA	14864075	14915176	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_14864438_14886533_14886683_14892392_14892500_14893500_14893625_14902486_14902540_14912431_14912523_14913723
transcript_61670.known	chr4	-	4922	13	FSM	ENSMUSG00000040536.16	ENSMUST00000041606.14	4922	13	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	6.35249294896631	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAATTTGTATTTATTCT	633	False	NA	NA	False	AATAAA	-24	NA	15149131	14952244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_14955922_14957825_14957918_14960007_14960086_14965905_14966019_14975132_14975187_14978154_14978232_14989157_14989280_15004968_15005106_15052619_15052718_15065323_15065350_15111193_15111303_15140224_15140250_15148817
transcript_61672.nic	chr4	-	1004	6	ISM	ENSMUSG00000040536.16	ENSMUST00000108273.2	2135	14	529	49879	-134	-49879	internal_fragment	FALSE	canonical	2	6	junction_1	6.24179461373089	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGCTATCTGTCATTTAT	499	False	NA	NA	False	AATAAA	-20	NA	15149265	15004807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_15005106_15052619_15052718_15065323_15065350_15111193_15111303_15140224_15140250_15148817
transcript_61676.nic	chr4	-	818	5	ISM	ENSMUSG00000040536.16	ENSMUST00000108273.2	2135	14	529	97579	-134	58454	internal_fragment	FALSE	canonical	3	19	junction_2	1.4790199457749	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGGTTCATTTTTTATA	499	False	NA	NA	False	AATACA	-15	NA	15149265	15052507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_15052718_15065323_15065350_15111193_15111303_15140224_15140250_15148817
transcript_61677.nnic	chr4	-	592	4	NIC	ENSMUSG00000040536.16	novel	4922	13	NA	NA	-17	58454	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	10.6144555520604	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGGTTCATTTTTTATA	616	False	NA	NA	False	AATACA	-15	NA	15149148	15052507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_15052718_15065323_15065350_15140224_15140250_15148817
transcript_61679.nnic	chr4	-	668	3	NNC	ENSMUSG00000040536.16	novel	4922	13	NA	NA	-134	-23861	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	11	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGGCTTATTCTGTGCT	499	False	NA	NA	False	AATAAA	-25	NA	15149265	15134822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_15135018_15140224_15140250_15148817
transcript_61680.nnic	chr4	-	475	3	NNC	ENSMUSG00000040536.16	novel	4922	13	NA	NA	3	-28977	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	11.5	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGAGTGTACTGGTGTATGA	636	False	NA	NA	False	NA	NA	NA	15149128	15139938	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_15140078_15140224_15140250_15148817
transcript_61681.nnic	chr4	-	898	2	NNC	ENSMUSG00000040536.16	novel	4922	13	NA	NA	93834	58454	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	0	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGGTTCATTTTTTATA	NA	False	NA	NA	False	AATACA	-15	NA	15055127	15052507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_15052718_15054439
transcript_61683.known	chr4	+	761	6	FSM	ENSMUSG00000086587.8	ENSMUST00000137532.8	761	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	21.5536539825618	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGATGTTGTTGGTGAAGTG	42	False	NA	NA	False	NA	NA	NA	14929907	14952893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_14930040_14936440_14936540_14938483_14938558_14942199_14942276_14947438_14947546_14952620
transcript_61685.known	chr4	+	876	6	FSM	ENSMUSG00000086587.8	ENSMUST00000136992.8	876	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_5	12.687001221723	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATGGTACAGAATTTTT	0	True	NA	6	True	TATAAA	-17	NA	14930660	14953030	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_14930771_14936440_14936540_14938483_14938558_14942199_14942276_14947438_14947546_14952620
transcript_61688.known	chr4	+	4670	3	FSM	ENSMUSG00000043252.9	ENSMUST00000062684.9	4670	3	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_2	4.5	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTCTCTTCTCTTTCTTT	27	False	NA	18	True	AATAAA	-19	NA	15265830	15286753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_15266750_15281006_15281163_15283158
transcript_61692.known	chr4	-	2959	10	FSM	ENSMUSG00000028223.9	ENSMUST00000029877.9	2959	10	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_6	12.6207745648706	604	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCTTGTAGAGGTTGCAT	NA	False	NA	NA	False	ATTAAA	-19	NA	15945507	15917239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_15919095_15919193_15919257_15919831_15919979_15922484_15922558_15924253_15924354_15929726_15929875_15930913_15931001_15931124_15931183_15932892_15933096_15945282
transcript_61697.known	chr4	+	2533	16	FSM	ENSMUSG00000028224.15	ENSMUST00000029879.15	2533	16	0	0	0	0	multi-exon	TRUE	canonical	3	165	junction_3	27.9629914152418	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTTTGTGTGGTAACGT	-45	True	NA	9	True	AATAAA	-15	NA	15957924	15992589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_15958111_15962310_15962445_15963771_15963921_15964246_15964407_15965133_15965238_15969340_15969459_15970720_15970915_15971765_15971864_15976034_15976165_15979140_15979414_15981306_15981749_15983953_15984023_15986508_15986665_15989001_15989116_15991181_15991232_15992433
transcript_61699.nnic	chr4	+	2443	16	NNC	ENSMUSG00000028224.15	novel	2533	16	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_3	53.2213825032341	106	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTTTGTGTGGTAACGT	-37	True	NA	9	True	AATAAA	-15	NA	15957932	15992589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_15958111_15962310_15962445_15963771_15963921_15964328_15964407_15965133_15965238_15969340_15969459_15970720_15970915_15971765_15971864_15976034_15976165_15979140_15979414_15981306_15981749_15983953_15984023_15986508_15986665_15989001_15989116_15991181_15991232_15992433
transcript_61704.known	chr4	+	1752	11	FSM	ENSMUSG00000028224.15	ENSMUST00000149069.2	1752	11	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_3	24.0407986556187	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAGATGTTGATTTAGCT	-3	True	NA	NA	False	NA	NA	NA	15957966	15981554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_15958111_15962310_15962445_15963771_15963921_15964246_15964407_15965133_15965238_15969340_15969459_15970720_15970915_15971765_15971864_15976034_15976165_15979140_15979414_15981306
transcript_61712.known	chr4	-	2658	6	FSM	ENSMUSG00000041153.10	ENSMUST00000037198.10	2658	6	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_2	19.0305018325844	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTGTGCCCTTTCCCATT	0	True	NA	NA	False	ATTAAA	-18	NA	16013888	15997120	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_15999001_16001929_16002022_16005356_16005549_16006356_16006494_16008600_16008756_16013686
transcript_61713.nic	chr4	-	2495	6	NIC	ENSMUSG00000041153.10	novel	2658	6	NA	NA	28	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_2	32.8852550545073	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCCTTGTGTGAACACTG	28	False	NA	-4	True	AATAAA	-17	NA	16013860	15997226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_15999001_16001929_16002022_16005385_16005549_16006356_16006494_16008600_16008756_16013686
transcript_61716.nic	chr4	-	1808	6	NIC	ENSMUSG00000041153.10	novel	2658	6	NA	NA	28	-687	combination_of_known_junctions	FALSE	canonical	3	39	junction_2	32.8852550545073	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGCAGTGTATTGGCTTG	28	False	NA	-4	True	ATTAAA	-17	NA	16013860	15997913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_15999001_16001929_16002022_16005385_16005549_16006356_16006494_16008600_16008756_16013686
transcript_61720.known	chr4	-	5648	16	FSM	ENSMUSG00000028228.6	ENSMUST00000029885.5	5648	16	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_5	15.541199724889	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATAGCTGTGTTTGGTTT	-13	True	NA	-6	True	AATAAA	-15	NA	19570108	19519253	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_19523295_19525002_19525240_19526283_19526418_19528059_19528112_19528187_19528243_19532398_19532533_19533054_19533115_19535211_19535299_19536526_19536626_19540740_19540831_19543253_19543338_19550587_19550660_19552243_19552319_19553717_19553898_19555361_19555502_19570000
transcript_61727.known	chr4	-	6440	25	FSM	ENSMUSG00000041058.16	ENSMUST00000108246.9	6440	25	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_17	21.4877225927324	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAAACTATTGCTTGAAC	-30	True	NA	NA	False	NA	NA	NA	19708993	19608302	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_19611814_19618284_19618358_19619155_19619253_19621927_19622033_19623101_19623223_19627632_19627774_19627871_19628006_19631045_19631206_19635253_19635343_19638604_19638677_19638774_19638851_19639951_19640081_19640194_19640280_19640360_19640416_19641733_19641909_19643365_19643462_19650115_19650441_19659562_19659748_19661965_19662033_19662121_19662260_19672418_19672544_19673155_19673295_19678344_19678436_19687790_19687887_19708838
transcript_61737.known	chr4	+	1734	10	FSM	ENSMUSG00000028229.12	ENSMUST00000029888.4	1734	10	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_9	10.5736686696625	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTTGGATTTAAGGTATT	29	True	NA	NA	False	CATAAA	-17	NA	19575206	19606932	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_19575328_19580389_19580508_19586775_19586864_19588525_19588686_19595069_19595160_19599613_19599670_19601355_19601444_19602642_19602674_19605402_19605537_19606084
transcript_61738.known	chr4	+	2141	4	FSM	ENSMUSG00000041052.9	ENSMUST00000035890.8	2141	4	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTCAATAGTTTTTCTC	-8	True	NA	NA	False	AATAAA	-23	NA	19818724	19842218	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_19819493_19823923_19824056_19839221_19839584_19841339
transcript_61742.known	chr4	+	2862	5	FSM	ENSMUSG00000073988.14	ENSMUST00000121491.8	2862	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	15.2212844398888	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGTGTTTATATTTTTC	17	False	NA	21	True	AATAAA	-17	NA	20008006	20030470	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_20008347_20014630_20014785_20021191_20021386_20023784_20023896_20028407
transcript_61745.known	chr4	+	3053	5	FSM	ENSMUSG00000073988.14	ENSMUST00000098244.2	3053	5	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	18.1934053986603	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATTAAAATCTATTAAA	5	True	NA	NA	False	AGTAAA	-10	NA	20008427	20030785	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_20008644_20014630_20014785_20021191_20021386_20023784_20023896_20028407
transcript_61754.known	chr4	+	1965	9	FSM	ENSMUSG00000073987.5	ENSMUST00000098242.4	1965	9	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_6	14.9080515158756	834	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCACTGTTTTTGAAGATAA	-25	True	NA	NA	False	AATAAA	-20	NA	20042051	20066750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_20042283_20046202_20046315_20049791_20049843_20052663_20052749_20054063_20054203_20057936_20058044_20058138_20058230_20063998_20064137_20065739
transcript_61756.known	chr4	+	6003	18	FSM	ENSMUSG00000040455.18	ENSMUST00000065111.15	6003	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	7.72986837222362	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTAGTTCCCTGGCTTG	-8	True	NA	3	True	AATAAA	-16	NA	21776271	21837870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_21776318_21780340_21780451_21781735_21781909_21782882_21782987_21784692_21784794_21796785_21796929_21797294_21797391_21798604_21798736_21804225_21804314_21810741_21810824_21815306_21815399_21816881_21816939_21817500_21817645_21824416_21825078_21826153_21826252_21830416_21830504_21832163_21832318_21834234
transcript_61761.known	chr4	+	592	5	FSM	ENSMUSG00000040455.18	ENSMUST00000125262.2	592	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	2.77263412660235	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATACTTTGCCTGATAATC	9082	False	NA	NA	False	ATTAAA	-11	NA	21776260	21784840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_21776318_21780340_21780451_21781735_21781909_21782882_21782987_21784692
transcript_61765.known	chr4	+	3365	12	FSM	ENSMUSG00000028252.21	ENSMUST00000102997.8	3365	12	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_11	80.4513096421711	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGTTTCTTTTTAATTT	20	False	NA	NA	False	NA	NA	NA	21727725	21750546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21748136
transcript_61766.known	chr4	+	3484	13	FSM	ENSMUSG00000028252.21	ENSMUST00000065928.11	3484	13	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_12	125.983023547707	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGTTTCTTTTTAATTT	-5	True	NA	NA	False	NA	NA	NA	21727700	21750546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21747482_21747577_21748136
transcript_61767.known	chr4	+	1453	12	FSM	ENSMUSG00000028252.21	ENSMUST00000120679.8	1453	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	132.289502216518	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGGTTCCTGACTCCTG	20	False	NA	NA	False	AATAAA	-19	NA	21727725	21759922	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21759424
transcript_61768.known	chr4	+	1406	12	FSM	ENSMUSG00000028252.21	ENSMUST00000108240.3	1406	12	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_11	64.4238290701982	693	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTAGTTTTCTGGATTTT	-5	True	NA	12	True	AATAAA	-14	NA	21727754	21747962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21747482
transcript_61769.known	chr4	+	445	4	FSM	ENSMUSG00000028252.21	ENSMUST00000145288.8	445	4	0	0	0	0	multi-exon	FALSE	canonical	3	397	junction_1	33.95094500403	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAAGTATCACTGTCTGGT	-2	True	NA	NA	False	TATAAA	-19	NA	21727757	21732583	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488
transcript_61770.known	chr4	-	1588	4	FSM	ENSMUSG00000028251.6	ENSMUST00000029915.6	1588	4	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_1	27.288581250528	1180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGCATGTATTTCTTTAA	-17	True	NA	0	True	AATAAA	-24	NA	21767212	21757381	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_21758476_21759369_21759530_21759622_21759794_21767049
transcript_61771.known	chr4	+	818	8	FSM	ENSMUSG00000040455.18	ENSMUST00000148304.8	818	8	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	8.2931001564	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTTCACAGCATGAAGGA	1	True	NA	NA	False	NA	NA	NA	21776280	21798661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_21776318_21780340_21780451_21781738_21781909_21782882_21782987_21784692_21784794_21796785_21796929_21797294_21797391_21798604
transcript_61772.known	chr4	+	4545	12	FSM	ENSMUSG00000028248.16	ENSMUST00000029911.12	4545	12	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_11	60.0897400518935	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTGGCTATGATACATACA	5	False	NA	18	True	AATAAA	-18	NA	21847582	21876475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986_21862178_21865876_21866015_21869515_21869616_21870351_21870406_21871437_21871609_21873585_21874673_21874912
transcript_61778.nic	chr4	+	3135	11	ISM	ENSMUSG00000028248.16	ENSMUST00000029911.12	4545	12	431	1219	-34	0	intron_retention	FALSE	canonical	3	310	junction_8	50.2622124463299	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTGCACCTTAATTTTAT	436	False	NA	13	True	AATAAA	-25	NA	21848013	21875256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986_21862178_21865876_21866015_21869515_21869616_21870351_21870406_21871437_21871609_21873585
transcript_61784.known	chr4	+	822	6	FSM	ENSMUSG00000028248.16	ENSMUST00000150368.8	822	6	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	174.396100873844	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAAGATGCGGAAGGAGG	22	False	NA	71	True	AAAAAG	-12	NA	21848080	21862123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860877_21860992_21861986
transcript_61786.known	chr4	+	2438	10	FSM	ENSMUSG00000028248.16	ENSMUST00000185001.8	2438	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	143.986882118553	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGGAAGGAGAAGGAGCG	-11	True	NA	NA	False	NA	NA	NA	21848047	21873755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_21848140_21854244_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986_21862178_21865876_21866015_21869515_21870406_21871437_21871609_21873585
transcript_61787.known	chr4	+	741	4	FSM	ENSMUSG00000028248.16	ENSMUST00000138681.8	741	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	225.463966078839	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGTGGTTGCTGGGAATT	5	True	NA	NA	False	NA	NA	NA	21848063	21857990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_21848140_21854346_21854446_21857179_21857369_21857613
transcript_6179.known	chr10	-	2491	8	FSM	ENSMUSG00000019795.18	ENSMUST00000159917.8	2491	8	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	203.876012741638	549	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCACCAGTCTGGATCCTT	NA	False	NA	-8	True	AATAAA	-12	NA	7539067	7505144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_7506741_7513772_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
transcript_61793.known	chr4	+	2651	7	FSM	ENSMUSG00000028247.3	ENSMUST00000029909.3	2651	7	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_5	29.1414176426306	1718	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGCCTTGGCCATTGTGC	-10	True	NA	11	True	NA	NA	NA	21879672	21912162	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_21879797_21892808_21892936_21896554_21896708_21899057_21899158_21900263_21900507_21908482_21908643_21910418
transcript_61796.known	chr4	+	2570	10	FSM	ENSMUSG00000040410.15	ENSMUST00000184582.2	2570	10	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_8	25.9019995414816	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGATTTTGCACATCTTTC	34	True	NA	NA	False	AATAAA	-28	NA	22357615	22434075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_22357682_22375660_22375771_22376495_22377078_22385906_22386253_22390676_22390922_22403531_22403746_22422716_22422789_22427149_22427463_22433145_22433259_22433566
transcript_61799.known	chr4	+	2546	9	FSM	ENSMUSG00000040410.15	ENSMUST00000039234.10	2546	9	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	14.7627063914446	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTTGTTAAGAATCTTT	NA	False	NA	NA	False	AATAAA	-44	NA	22357542	22434091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_22357682_22375660_22375771_22376495_22377078_22385906_22386253_22390676_22390922_22403531_22403746_22422716_22422789_22427149_22427463_22433566
transcript_6180.known	chr10	-	2607	9	FSM	ENSMUSG00000019795.18	ENSMUST00000161123.8	2607	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	305.06638621782	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGATCCTTGGTAGTCA	NA	False	NA	0	True	AATAAA	-20	NA	7539028	7505136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_7506741_7513819_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524230_7524425_7524814_7524920_7538838
transcript_61800.known	chr4	+	2478	9	FSM	ENSMUSG00000040410.15	ENSMUST00000184455.8	2478	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	22.7156333832011	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTTCTTTGTTAAGAATC	-11	True	NA	NA	False	AATAAA	-41	NA	22357570	22434088	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_22357682_22375660_22375771_22376495_22377078_22385906_22386253_22390713_22390922_22403531_22403746_22422716_22422789_22427149_22427463_22433566
transcript_61801.known	chr4	+	400	1	FSM	ENSMUSG00000081810.2	ENSMUST00000117908.2	400	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGTGGTGACTTGATGTT	33	False	NA	NA	False	AAAAAG	-13	NA	22519627	22520027	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_22519600_22520000
transcript_61803.known	chr4	+	4478	24	FSM	ENSMUSG00000045751.17	ENSMUST00000108222.9	4478	24	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_15	74.8650203134992	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTCTCTGTGAATATTTA	-16	True	NA	NA	False	ATTAAA	-23	NA	24496450	24602950	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_24497066_24497837_24497964_24500036_24500087_24502747_24502836_24502931_24503113_24505344_24505436_24507313_24507445_24508404_24508519_24517059_24517237_24521240_24521304_24529043_24529164_24532902_24533130_24535938_24536449_24574380_24574575_24578752_24578904_24580053_24580203_24581101_24581245_24586182_24586343_24588202_24588373_24591033_24591246_24596137_24596302_24598785_24598883_24600154_24600323_24602573
transcript_61804.nnic	chr4	+	1170	6	NNC	ENSMUSG00000045751.17	novel	1350	5	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_1	143.521426971724	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGTCATTCTCGTTGAT	-22	True	NA	9	True	AATAAA	-18	NA	24496444	24503413	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_24496635_24496831_24497066_24497837_24497964_24500036_24500087_24502747_24502836_24502931
transcript_61805.nic	chr4	+	1146	6	NIC	ENSMUSG00000045751.17	novel	1350	5	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	154.538797717596	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGTCATTCTCGTTGAT	-8	True	NA	9	True	AATAAA	-18	NA	24496458	24503413	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_24496635_24496841_24497066_24497837_24497964_24500036_24500087_24502747_24502836_24502931
transcript_61807.known	chr4	+	1350	5	FSM	ENSMUSG00000045751.17	ENSMUST00000138567.9	1350	5	0	0	0	0	multi-exon	FALSE	canonical	3	361	junction_3	29.9457843443781	547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGTCATTCTCGTTGAT	-5	True	NA	9	True	AATAAA	-18	NA	24496461	24503413	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_24497066_24497837_24497964_24500036_24500087_24502747_24502836_24502931
transcript_61809.known	chr4	+	373	2	FSM	ENSMUSG00000045751.17	ENSMUST00000139050.2	373	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGTGGCGCCCTTAAGC	-2	True	NA	NA	False	NA	NA	NA	24496464	24497044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_24496635_24496841
transcript_6181.known	chr10	-	1132	7	FSM	ENSMUSG00000019795.18	ENSMUST00000163085.8	1132	7	0	0	0	0	multi-exon	FALSE	canonical	3	667	junction_3	37.7491721763537	2666	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATCATTCTTGCTTTATT	NA	False	NA	1	True	AATAAA	-21	NA	7539025	7513493	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
transcript_61811.known	chr4	-	7143	11	FSM	ENSMUSG00000040387.17	ENSMUST00000108218.10	7143	11	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_4	2.76405499221705	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTCTGTCTAATAAAACAT	NA	False	NA	NA	False	ATTAAA	-24	NA	24851124	24612553	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_24617547_24626896_24626992_24629159_24629353_24632642_24632702_24649539_24650267_24682054_24682271_24708952_24709052_24743857_24743966_24792616_24792798_24800805_24800891_24850737
transcript_61814.known	chr4	+	673	4	FSM	ENSMUSG00000028261.14	ENSMUST00000151249.2	673	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	218.397700435594	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTTTGCACATTAGCCCA	56	False	NA	-6	True	AATAAA	-7	NA	24898175	24903485	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_24898303_24898572_24898677_24901693_24901782_24903131
transcript_61816.known	chr4	+	3632	3	FSM	ENSMUSG00000028261.14	ENSMUST00000029925.10	3632	3	0	0	0	0	multi-exon	FALSE	canonical	3	446	junction_2	23.5	1824	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATCTGCCTGCCTACTTCT	-37	True	NA	NA	False	AATAAA	-16	NA	24898082	24905001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_24898303_24898572_24898677_24901693
transcript_61818.known	chr4	+	2358	2	FSM	ENSMUSG00000028261.14	ENSMUST00000146721.2	2358	2	0	0	0	0	multi-exon	FALSE	canonical	3	446	junction_1	0	456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTGGTTTTTTCTTTC	11	True	NA	14	True	AATAAA	-27	NA	24898130	24903505	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_24898677_24901693
transcript_6182.known	chr10	+	1286	8	FSM	ENSMUSG00000040034.16	ENSMUST00000040135.9	1286	8	0	0	0	0	multi-exon	FALSE	canonical	3	1090	junction_2	84.4680835751418	4218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAATGTTGGCTTGCTGCT	NA	False	NA	20	True	AATAAA	-20	NA	7543266	7554645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_7543446_7543765_7543889_7545316_7545395_7546702_7546884_7549348_7549485_7550769_7550922_7552003_7552127_7554331
transcript_61822.known	chr4	-	4316	19	FSM	ENSMUSG00000040359.15	ENSMUST00000102994.10	4316	19	0	0	0	0	multi-exon	TRUE	canonical	3	153	junction_3	22.816024799564	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACATTTTATGTTATACAG	-6	True	NA	-15	True	AATAAA	-14	NA	25281821	25248604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_25250689_25251335_25251517_25251931_25252018_25252298_25252380_25254558_25254690_25254770_25254935_25255997_25256116_25259214_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25269175_25270559_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622_25280769_25281675
transcript_61825.nic	chr4	-	2132	15	ISM	ENSMUSG00000040359.15	ENSMUST00000102994.10	4316	19	-27	5733	-27	-4191	5prime_fragment	FALSE	canonical	3	188	junction_2	18.7215089658709	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGACTTTTTCCAGTAGTT	-1	True	NA	NA	False	AGTAAA	-25	NA	25281848	25254337	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_25254690_25254770_25254935_25255997_25256116_25259214_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25269175_25270559_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622_25280769_25281675
transcript_61826.nic	chr4	-	1442	12	ISM	ENSMUSG00000040359.15	ENSMUST00000102994.10	4316	19	-27	10666	-27	-9124	5prime_fragment	FALSE	canonical	3	188	junction_2	16.3489833383714	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAAGGGAAGAAAAGATG	-1	True	NA	2	True	TATAAA	-15	NA	25281848	25259270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25269175_25270559_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622_25280769_25281675
transcript_61829.known	chr4	-	2687	18	FSM	ENSMUSG00000040359.15	ENSMUST00000038705.8	2687	18	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_16	52.1131321905794	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGACTTGTTTGTTATTT	13	True	NA	3	True	AATAAA	-24	NA	25281763	25250146	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_25250689_25251335_25251517_25251931_25252018_25252298_25252380_25254558_25254690_25254770_25254935_25255997_25256116_25259214_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25269175_25270559_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25280622_25280769_25281675
transcript_6183.known	chr10	+	458	2	FSM	ENSMUSG00000040034.16	ENSMUST00000162346.2	458	2	0	0	0	0	multi-exon	FALSE	canonical	3	1246	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGAAATGGAATTCAGGTAA	NA	False	NA	NA	False	GGGGCT	-1	NA	7543277	7544055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_7543446_7543765
transcript_61830.known	chr4	-	12134	3	FSM	ENSMUSG00000055373.9	ENSMUST00000084770.5	12134	3	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	8.5	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTTTTGGTTCTGTACA	303	False	NA	0	True	AATAAA	-21	NA	25800146	25609331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_25620821_25709027_25709115_25799588
transcript_61835.known	chr4	-	2579	2	FSM	ENSMUSG00000055373.9	ENSMUST00000108199.2	2579	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACCATTTATAGAACGCTA	8	True	NA	NA	False	AATAAA	-38	NA	25800244	25618897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_25620821_25799588
transcript_61836.known	chr4	-	4867	5	FSM	ENSMUSG00000040520.8	ENSMUST00000041374.8	4867	5	0	0	0	0	multi-exon	TRUE	canonical	3	44	junction_4	9.33742469849155	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGAAATCTATTCATTGTT	0	True	NA	-4	True	AATAAA	-25	NA	26346891	26324505	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_26328309_26329085_26329163_26336620_26336731_26340416_26340999_26346596
transcript_6184.known	chr10	-	1073	7	FSM	ENSMUSG00000019795.18	ENSMUST00000161428.8	1073	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	348.511477572834	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATCATTCTTGCTTTATT	NA	False	NA	1	True	AATAAA	-21	NA	7524919	7513493	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_7513990_7514631_7514760_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814
transcript_61843.known	chr4	+	6746	17	FSM	ENSMUSG00000028289.13	ENSMUST00000029964.12	6746	17	0	0	0	0	multi-exon	TRUE	canonical	2	9	junction_4	5.10170008428563	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTAAAGAAAATCCTGTCT	0	True	NA	NA	False	NA	NA	NA	28813130	28967499	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_28813481_28817444_28817510_28820998_28821669_28870556_28870713_28871660_28871997_28935703_28935829_28938595_28938780_28942585_28942695_28943322_28943379_28947527_28947654_28948597_28948784_28949328_28949391_28950358_28950569_28951262_28951413_28961288_28961483_28962409_28962566_28963888
transcript_61844.known	chr4	+	6557	11	FSM	ENSMUSG00000028282.13	ENSMUST00000178925.8	6557	11	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_1	42.596243965871	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATTAGTATGCTTCTT	24	False	NA	7	True	AATAAA	-20	NA	32615472	32653265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_32615493_32624083_32624167_32630177_32630247_32631065_32631167_32631805_32631881_32634767_32634884_32639363_32641559_32643539_32646661_32648026_32648127_32649172_32649258_32652673
transcript_61847.known	chr4	+	595	7	FSM	ENSMUSG00000028282.13	ENSMUST00000127619.2	595	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_4	91.4702440991362	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACACTGCACAGCCAAACT	21	False	NA	NA	False	NA	NA	NA	32615469	32639501	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_32615493_32624083_32624167_32630177_32630247_32631065_32631167_32631815_32631881_32634767_32634884_32639363
transcript_6185.known	chr10	+	7209	8	FSM	ENSMUSG00000040021.14	ENSMUST00000165952.9	7209	8	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_4	35.692564823412	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATGACTGGAAAGCTGAAT	NA	False	NA	23	True	AATAAA	-26	NA	7556977	7592224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_7557215_7567098_7567579_7573265_7573414_7577373_7578885_7581223_7581807_7586228_7586412_7586612_7586720_7588264
transcript_61852.known	chr4	+	1508	2	FSM	ENSMUSG00000058006.13	ENSMUST00000151626.2	1508	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAAGAAGGCGGCTAAGG	46	False	NA	NA	False	AAAAAG	-3	NA	32657182	32664170	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_32657353_32662832
transcript_61856.known	chr4	+	465	3	FSM	ENSMUSG00000045854.5	ENSMUST00000062802.5	465	3	0	0	0	0	multi-exon	FALSE	canonical	3	270	junction_2	3	1316	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTTGGAATCCTCAATTG	-15	True	NA	22	True	ATTAAA	-22	NA	32800252	32801383	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_32800336_32800609_32800751_32801142
transcript_61857.known	chr4	+	345	1	FSM	ENSMUSG00000094344.2	ENSMUST00000180255.2	345	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1086	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCTTTTGTTAAGTTGGC	38	False	NA	-6	True	NA	NA	NA	32964887	32965232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_32964900_32965200
transcript_61859.known	chr4	+	5008	7	FSM	ENSMUSG00000028278.15	ENSMUST00000098190.10	5008	7	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_4	9.38823140367177	153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTTGAAGTGGGGTCTCT	13	True	NA	4	True	AATAAA	-19	NA	32983036	33022180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_32983608_32995801_32996098_33004150_33004351_33005133_33005249_33007069_33007213_33012903_33013053_33018646
transcript_61862.known	chr4	+	3530	8	FSM	ENSMUSG00000028277.14	ENSMUST00000124992.8	3530	8	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_6	15.4813910675932	160	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATTTACTGGTGTTACTA	-32	True	NA	28	True	AATAAA	-38	NA	33031415	33052363	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_33031617_33036708_33036783_33038198_33038331_33040732_33040818_33041355_33041462_33043856_33043987_33045079_33045200_33049681
transcript_61865.known	chr4	+	829	5	FSM	ENSMUSG00000054679.9	ENSMUST00000108159.2	829	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	2.44948974278318	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCTCCTCCCAGCAGAGC	-27	True	NA	NA	False	CATAAA	-13	NA	33209262	33231293	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_33209371_33223567_33223673_33225764_33225869_33226027_33226170_33230923
transcript_61868.known	chr4	-	1648	2	FSM	ENSMUSG00000040128.10	ENSMUST00000049357.10	1648	2	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTGGCTTTTTGTGTGTG	-1	True	NA	2	True	TTTAAA	-38	NA	33248510	33245422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_33246508_33247947
transcript_61875.known	chr4	+	4157	16	FSM	ENSMUSG00000028274.18	ENSMUST00000108153.9	4157	16	0	0	0	0	multi-exon	TRUE	canonical	3	214	junction_12	34.6965256025569	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTCTTTCCTGTCTCG	-36	True	NA	11	True	AATAAA	-18	NA	33310310	33502614	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_33310525_33320518_33320629_33324873_33324978_33325058_33325148_33329519_33329596_33330841_33331083_33337862_33337973_33338990_33339093_33356060_33356197_33362879_33362952_33368572_33368738_33379368_33379438_33404152_33404254_33443600_33443668_33498950_33499075_33500237
transcript_61883.known	chr4	+	2379	16	FSM	ENSMUSG00000028274.18	ENSMUST00000029942.8	2379	16	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_15	78.2297471128044	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAAGTTCTTCTGGTTTTG	-19	True	NA	13	True	ATTAAA	-26	NA	33310327	33500914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_33310525_33320518_33320629_33324873_33324978_33325058_33325148_33329519_33329596_33330841_33331083_33337862_33337973_33338990_33339093_33356060_33356197_33362879_33362952_33368572_33368738_33379368_33379438_33404152_33404254_33443600_33443668_33498950_33499075_33500298
transcript_61884.known	chr4	-	1197	7	FSM	ENSMUSG00000028264.17	ENSMUST00000029927.6	1197	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATGATCTTGAATTGAC	NA	False	NA	NA	False	AATAAA	-18	NA	34050191	34028313	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_34028555_34029064_34029186_34039245_34039382_34040807_34040915_34041937_34042040_34044197_34044255_34049758
transcript_61885.known	chr4	+	292	1	FSM	ENSMUSG00000084119.2	ENSMUST00000118727.2	292	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATTTCAATCACTCATAAA	NA	False	NA	NA	False	NA	NA	NA	34457889	34458181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_34457900_34458200
transcript_61888.known	chr4	-	2266	20	FSM	ENSMUSG00000040044.12	ENSMUST00000108142.8	2266	20	0	0	0	0	multi-exon	FALSE	canonical	3	292	junction_6	92.190426792828	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTGCTTCATTCTTGCT	-5	True	NA	-17	True	CATAAA	-21	NA	34614913	34570795	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578030_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
transcript_61889.known	chr4	-	2300	20	FSM	ENSMUSG00000040044.12	ENSMUST00000048706.10	2300	20	0	0	0	0	multi-exon	FALSE	canonical	3	324	junction_6	85.9268193438375	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTGCTTCATTCTTGCT	NA	False	NA	-17	True	CATAAA	-21	NA	34614944	34570795	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578033_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
transcript_61893.known	chr4	+	1843	20	FSM	ENSMUSG00000028292.15	ENSMUST00000142045.8	1843	20	0	0	0	0	multi-exon	TRUE	canonical	3	67	junction_4	142.027152021567	1154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATGTGTGTAGTAGTGTG	5	True	NA	8	True	AATAGA	-23	NA	34614973	34660163	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_34615027_34618553_34618628_34623410_34623514_34625400_34625485_34630476_34630571_34633657_34633714_34636951_34637036_34639244_34639322_34645696_34645856_34646507_34646615_34647785_34647882_34650190_34650252_34652131_34652209_34654809_34654935_34656005_34656074_34656152_34656263_34656767_34656864_34657166_34657242_34659490_34659555_34659983
transcript_61900.nic	chr4	-	2123	9	NIC	ENSMUSG00000028293.15	novel	2039	8	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_8	55.3893886498127	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGTGCAGTTACTTTGT	21	False	34687460	-13	True	AATAAA	-14	NA	34687439	34663256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_34664231_34668925_34669061_34669486_34669664_34671779_34671847_34675029_34675183_34675471_34675632_34683284_34683463_34684048_34684132_34687243
transcript_61905.known	chr4	-	2039	8	FSM	ENSMUSG00000028293.15	ENSMUST00000029970.14	2039	8	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_4	17.6831523646385	616	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGTGCAGTTACTTTGT	-21	True	NA	-13	True	AATAAA	-14	NA	34687438	34663256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_34664231_34668925_34669061_34669486_34669664_34671779_34671847_34675029_34675183_34675471_34675632_34683284_34683463_34687243
transcript_61911.known	chr4	-	1688	11	FSM	ENSMUSG00000028294.16	ENSMUST00000108136.8	1688	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	1.88679622641132	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTACTGTGTATTTTTT	16	True	NA	NA	False	ATTAAA	-15	NA	34730178	34711331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_34711596_34714394_34714536_34716304_34716504_34719044_34719165_34719572_34719782_34721415_34721575_34722607_34722797_34724814_34724906_34727904_34727989_34728795_34728909_34730059
transcript_61912.nic	chr4	-	1723	11	NIC	ENSMUSG00000028294.16	novel	1688	11	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	2.61725046566048	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTACTGTGTATTTTTT	-23	True	NA	NA	False	ATTAAA	-15	NA	34730217	34711331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_34711596_34714394_34714536_34716304_34716504_34719044_34719165_34719572_34719782_34721415_34721575_34722607_34722797_34724814_34724906_34727904_34727989_34728795_34728909_34730063
transcript_61916.known	chr4	-	557	5	FSM	ENSMUSG00000028294.16	ENSMUST00000160209.2	557	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.9474565306379	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGTGTTTTGTTTTGTTTT	-1	True	NA	NA	False	AATAAA	-19	NA	34730195	34723559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_34723697_34724814_34724906_34727904_34727989_34728795_34728909_34730063
transcript_61917.known	chr4	-	935	4	FSM	ENSMUSG00000028295.15	ENSMUST00000108133.10	935	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	76.2510473516412	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGAGTTTTTCTTTT	14	True	NA	NA	False	AATAAA	-6	NA	34778337	34768663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_34769148_34771257_34771415_34771873_34772054_34778223
transcript_61918.known	chr4	-	892	4	FSM	ENSMUSG00000028295.15	ENSMUST00000108131.8	892	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	75.9780670105963	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGAGTTTTTCTTTT	2	True	NA	NA	False	AATAAA	-6	NA	34778349	34768663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_34769148_34771257_34771415_34771873_34772054_34778278
transcript_61919.known	chr4	-	782	3	FSM	ENSMUSG00000028295.15	ENSMUST00000108134.8	782	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	76	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGAGTTTTTCTTTT	-13	True	NA	NA	False	AATAAA	-6	NA	34778364	34768663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_34769148_34771257_34771415_34778223
transcript_61920.known	chr4	-	526	2	FSM	ENSMUSG00000028295.15	ENSMUST00000139922.2	526	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAACAAAGTGGTTTGA	20	True	NA	NA	False	ATTAAA	-7	NA	34778331	34768674	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_34769148_34778278
transcript_61921.known	chr4	-	786	3	FSM	ENSMUSG00000028295.15	ENSMUST00000029972.4	786	3	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_2	5.5	1515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGAGTTTTTCTTTT	NA	False	NA	NA	False	AATAAA	-6	NA	34778423	34768663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_34769148_34771257_34771415_34778278
transcript_61922.known	chr4	-	9986	8	FSM	ENSMUSG00000039967.15	ENSMUST00000047950.6	9986	8	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_4	23.430313524081	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAATAATGTTTTGTTCAT	-19	True	NA	5	True	AATAAA	-37	NA	34882960	34803112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_34812044_34816273_34816416_34819463_34819601_34826692_34826896_34839331_34839468_34839568_34839648_34839831_34839987_34882757
transcript_61924.nnic	chr4	+	795	4	NNC	ENSMUSG00000028298.11	novel	687	4	NA	NA	4321	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.471404520791032	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGATGTGCCGCCTTCT	4303	False	NA	NA	False	AATAAA	-18	NA	34898108	34907370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_34898300_34903992_34904107_34905077_34905263_34907065
transcript_61926.known	chr4	-	951	3	FSM	ENSMUSG00000085824.8	ENSMUST00000125820.2	951	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGAGTCTGGGGTCTTCC	NA	False	NA	NA	False	NA	NA	NA	34911481	34909788	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_34910609_34910850_34910951_34911450
transcript_61927.known	chr4	-	6030	4	FSM	ENSMUSG00000073910.11	ENSMUST00000102975.10	6030	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	2.86744175568088	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTAGTCTGTCGTCTTT	-32	True	NA	NA	False	AATAAA	-16	NA	35157484	34949073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_34954048_34985915_34986119_35083769_35084390_35157251
transcript_61929.known	chr4	-	1023	2	FSM	ENSMUSG00000073910.11	ENSMUST00000155725.2	1023	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGAAAAAGAAAAAAAAATCT	-32	True	NA	NA	False	NA	NA	NA	35157484	35083599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_35084390_35157251
transcript_61930.known	chr4	-	3193	11	FSM	ENSMUSG00000028300.15	ENSMUST00000108127.4	3193	11	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_8	10.8355895086516	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTATGTTTTAGTTCATT	NA	False	NA	-5	True	AATAAA	-16	NA	35225880	35191286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_35193069_35193184_35193295_35194136_35194195_35196972_35197209_35205767_35205885_35211291_35211365_35213008_35213074_35213548_35213645_35217212_35217273_35218413_35218917_35225787
transcript_61934.nic	chr4	-	1341	8	ISM	ENSMUSG00000028300.15	ENSMUST00000108127.4	3193	11	13	5575	13	182	5prime_fragment	FALSE	canonical	3	67	junction_5	10.3706808073609	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGCACTTTTTCTTTAT	NA	False	NA	NA	False	AAGAAA	-21	NA	35225867	35196861	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_35197209_35205767_35205885_35211291_35211365_35213008_35213074_35213548_35213645_35217212_35217273_35218413_35218917_35225787
transcript_61935.known	chr4	-	873	1	FSM	ENSMUSG00000082762.2	ENSMUST00000121722.2	873	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1327	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGTTTTTATATGAGAAAA	8313	False	NA	NA	False	NA	NA	NA	35202975	35202102	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_35202100_35203000
transcript_61936.known	chr4	+	3832	21	FSM	ENSMUSG00000028405.10	ENSMUST00000102973.4	3832	21	0	0	0	0	multi-exon	TRUE	canonical	3	234	junction_5	35.2306684580353	292	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTGGCTTTGGAGTTGA	-13	True	NA	9	True	ATTAAA	-17	NA	40143080	40198338	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_40143542_40163718_40163846_40164608_40164778_40167053_40167192_40175664_40175735_40175841_40176026_40176495_40176636_40177778_40177951_40178972_40179074_40180171_40180289_40181382_40181543_40182803_40182940_40183567_40183653_40184900_40185058_40186315_40186441_40188165_40188271_40189343_40189487_40190736_40190885_40193738_40193862_40196244_40196431_40197553
transcript_61938.known	chr4	-	3533	9	FSM	ENSMUSG00000040296.16	ENSMUST00000137903.8	3533	9	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_4	6.68487097856047	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTATATGGGTGTTTTTT	-9	True	NA	NA	False	NA	NA	NA	40220600	40203776	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_40206107_40208450_40208595_40208770_40208923_40209878_40210050_40211549_40211641_40213730_40213880_40216354_40216491_40217329_40217488_40220398
transcript_61943.known	chr4	-	3856	3	FSM	ENSMUSG00000036822.7	ENSMUST00000042575.7	3856	3	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_1	19	194	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTGTGCAACATTGATT	9561	False	NA	0	True	AATAAA	-28	NA	40269850	40259600	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_40263082_40268303_40268502_40269673
transcript_61944.known	chr4	-	480	3	FSM	ENSMUSG00000071014.11	ENSMUST00000108108.3	480	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	1267.5	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATCACTGTCCGTGTTACT	2	True	NA	-11	True	AATAAA	-17	NA	40279409	40270664	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_40270848_40272809_40272855_40279157
transcript_61945.known	chr4	+	1044	2	FSM	ENSMUSG00000028407.5	ENSMUST00000129758.3	1044	2	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	0	1062	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGATACTTTCTTTACA	-1	True	NA	NA	False	AATAAA	-6	NA	40269578	40270940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_40269720_40270037
transcript_61946.known	chr4	-	659	4	FSM	ENSMUSG00000071014.11	ENSMUST00000095128.10	659	4	0	0	0	0	multi-exon	FALSE	canonical	3	2502	junction_3	28.8251433455046	13367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATTAGCTACTTTTTTCT	-10	True	NA	63	True	AGTAAA	-20	NA	40279421	40270590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_40270848_40272809_40272855_40277652_40277746_40279157
transcript_61947.known	chr4	-	5383	8	FSM	ENSMUSG00000028411.16	ENSMUST00000068125.11	5383	8	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_7	54.3187869180167	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGTAGTGTCATGCTTTT	1	True	NA	NA	False	AATAAA	-25	NA	40702914	40682381	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_40686714_40688108_40688213_40690968_40691196_40693389_40693450_40694851_40695137_40695376_40695424_40697216_40697354_40702723
transcript_61951.known	chr4	-	1378	8	FSM	ENSMUSG00000028411.16	ENSMUST00000129021.9	1378	8	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_6	41.4453168128111	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTGGATTGTGTAGTAT	21	False	NA	-8	True	AATATA	-17	NA	40703187	40686241	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_40686714_40688108_40688213_40690968_40691196_40693389_40693450_40694851_40695137_40695376_40695419_40697216_40697354_40703136
transcript_61965.known	chr4	+	5622	9	FSM	ENSMUSG00000028410.14	ENSMUST00000164233.8	5622	9	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	940.162278213182	1416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAATCAATCCGAAGCT	-35	True	NA	NA	False	ATTAAA	-9	NA	40722921	40737149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_40723137_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
transcript_61973.known	chr4	+	826	5	FSM	ENSMUSG00000028410.14	ENSMUST00000125442.8	826	5	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	1104.9410617766	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTTCATATTGATAAAGG	-12	True	NA	NA	False	AAGAAA	-26	NA	40722944	40728164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_40723137_40723702_40723845_40723972_40724151_40726104_40726210_40727955
transcript_61975.known	chr4	-	2418	12	FSM	ENSMUSG00000028409.12	ENSMUST00000030117.5	2418	12	0	0	0	0	multi-exon	FALSE	canonical	3	1190	junction_8	75.1643928360578	3017	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTTCCATGTTGATGTCC	8535	False	NA	61	True	ACTAAA	-34	NA	40757923	40736541	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_40737396_40738289_40738443_40739518_40739687_40743014_40743142_40744030_40744159_40745451_40745569_40748538_40748659_40751924_40752054_40753486_40753598_40754507_40754661_40755626_40755838_40757776
transcript_61976.known	chr4	-	1523	8	FSM	ENSMUSG00000028409.12	ENSMUST00000130503.8	1523	8	0	0	0	0	multi-exon	FALSE	canonical	3	1190	junction_4	78.848602021953	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	-27	True	NA	NA	False	NA	NA	NA	40757883	40743583	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_40744159_40745451_40745569_40748538_40748659_40751924_40752054_40753486_40753598_40754507_40754661_40755626_40755838_40757776
transcript_61977.nnic	chr4	-	634	2	Genic_Genomic	ENSMUSG00000056412.7	novel	306	1	NA	NA	-209	166	multi-exon	FALSE	canonical	0	0	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATAGGCACTGGGGGTTGG	6111	False	NA	NA	False	NA	NA	NA	40775773	40775092	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr4_-_40775596_40775642
transcript_61978.nnic	chr4	+	506	4	NNC	ENSMUSG00000028415.5	novel	397	4	NA	NA	3185	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	2.05480466765633	39	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAAGTGGCCCAGTCTTTG	3183	False	NA	NA	False	AATAAA	-18	NA	40923238	40931395	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_40923452_40924923_40924965_40929078_40929192_40931256
transcript_61979.nnic	chr4	+	418	4	NNC	ENSMUSG00000028415.5	novel	397	4	NA	NA	3214	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2.62466929133727	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAAGTGGCCCAGTCTTTG	3212	False	NA	NA	False	AATAAA	-18	NA	40923267	40931395	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_40923393_40924923_40924965_40929078_40929192_40931256
transcript_61980.nnic	chr4	+	426	4	NNC	ENSMUSG00000028415.5	novel	397	4	NA	NA	3489	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	2.35702260395516	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAAGTGGCCCAGTCTTTG	3487	False	NA	NA	False	AATAAA	-18	NA	40923542	40931395	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_40923676_40924923_40924965_40929078_40929192_40931256
transcript_61982.nnic	chr4	-	1158	8	NNC	ENSMUSG00000028416.14	novel	1295	7	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	canonical	3	161	junction_7	669.499477983671	1086	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGTTGGCTCTGTGGTGG	NA	False	NA	-9	True	AAAAAG	-37	NA	40948327	40936400	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_40936677_40937131_40937195_40939076_40939185_40941524_40941639_40943624_40943708_40946168_40946298_40947721_40948051_40948271
transcript_61985.known	chr4	+	1519	8	FSM	ENSMUSG00000028419.6	ENSMUST00000030128.6	1519	8	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_1	44.0352363547231	723	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAATTGTAGTATCGCTTT	0	True	NA	14	True	AATAAA	-16	NA	40948406	40965303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_40948677_40949453_40949559_40950513_40950561_40952367_40952462_40952981_40953054_40958889_40958999_40960858_40960972_40964594
transcript_6199.known	chr10	+	1775	11	FSM	ENSMUSG00000019794.14	ENSMUST00000165806.8	1775	11	0	0	0	0	multi-exon	TRUE	canonical	3	353	junction_4	21.6323831327018	1158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTTTCAATTTAGCACC	NA	False	NA	10	True	AATAAA	-19	NA	7601763	7638914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_7601888_7614486_7614662_7617171_7617330_7619319_7619501_7624539_7624662_7627307_7627414_7628507_7628667_7635460_7635588_7636498_7636634_7637006_7637134_7638553
transcript_61990.known	chr4	+	4594	24	FSM	ENSMUSG00000028423.16	ENSMUST00000098143.11	4594	24	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_17	193.960434840598	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTATTTTGTTTATTGAG	6045	False	NA	34	True	ATTAAA	-19	NA	40970905	41025993	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_40971060_40976352_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41015202_41015434_41016076_41016151_41017971_41018074_41018447_41018490_41021748_41021848_41022259_41022327_41023613_41023760_41024473_41024579_41024800
transcript_61991.known	chr4	+	4349	16	FSM	ENSMUSG00000028423.16	ENSMUST00000030133.15	4349	16	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_8	92.9020033272815	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTGCCTCTTCATTTTT	6045	False	NA	NA	False	AATAAA	-15	NA	40970905	41013871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_40971060_40976352_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41012057
transcript_61993.nic	chr4	+	1444	3	ISM	ENSMUSG00000028423.16	ENSMUST00000091614.7	3617	16	23	27393	23	-26954	5prime_fragment	FALSE	canonical	3	562	junction_1	20.5	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAAAAAGAAAATGT	6068	False	NA	NA	False	NA	NA	NA	40970928	40985215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_40971060_40976352_40977343_40984892
transcript_61994.nic	chr4	+	426	2	ISM	ENSMUSG00000028423.16	ENSMUST00000091614.7	3617	16	41	35943	41	-35504	5prime_fragment	FALSE	canonical	3	562	junction_1	0	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAGAAACAAGAAAGCACAAG	6086	False	NA	NA	False	AATGAA	-12	NA	40970946	40976665	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_40971060_40976352
transcript_61995.known	chr4	-	1765	6	FSM	ENSMUSG00000028435.9	ENSMUST00000055327.8	1765	6	0	0	0	0	multi-exon	FALSE	canonical	3	1694	junction_1	130.458269189806	1051	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	-1	True	NA	-4	True	AATAAA	-21	NA	41098183	41092721	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
transcript_61996.known	chr4	-	4599	26	FSM	ENSMUSG00000028430.15	ENSMUST00000030138.9	4599	26	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_9	34.7585960591046	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGACTTGTCTTTCCTCTT	NA	False	NA	-4	True	NA	NA	NA	41124455	41114426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118417_41118573_41118648_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119877_41120006_41120185_41120273_41120390_41120537_41120640_41120723_41120783_41121006_41121128_41121210_41121366_41121451_41121587_41121778_41121948_41122123_41122304_41123258_41123376_41123458_41123660_41124158
transcript_62.known	ERCC-00131	+	755	1	FSM	ERCC-00131A	DQ855003	755	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	516	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00131_+_0_800
transcript_62001.known	chr4	+	3600	5	FSM	ENSMUSG00000036241.4	ENSMUST00000040008.4	3600	5	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_4	37.5857353260516	209	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGTATTGCTATTTCCC	7	False	NA	NA	False	AATAAA	-17	NA	41135742	41193380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_41136247_41174040_41174128_41183244_41183343_41189151_41189287_41190604
transcript_62006.known	chr4	-	4368	29	FSM	ENSMUSG00000028433.15	ENSMUST00000030143.13	4368	29	0	0	0	0	multi-exon	TRUE	canonical	3	748	junction_17	84.4073804080362	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCTTGGTCTCCGTGTTCT	218	False	NA	-6	True	AATAAA	-12	NA	41275135	41194315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_41195247_41195333_41195526_41195607_41195673_41195745_41195854_41195943_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202458_41203532_41203573_41205523_41205738_41206152_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565_41216634_41218310_41218364_41221555_41221622_41223355_41223460_41226279_41226335_41227198_41227277_41229694_41229849_41233603_41233715_41235516_41235595_41251534_41251672_41275039
transcript_6201.known	chr10	-	1525	8	FSM	ENSMUSG00000040006.14	ENSMUST00000124838.2	1525	8	0	0	0	0	multi-exon	TRUE	canonical	3	252	junction_3	35.482102415679	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGAATTGCTTTATTT	7489	False	NA	-10	True	AATAAA	-8	NA	7656655	7643719	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_7644350_7646120_7646285_7649061_7649196_7649711_7649869_7650981_7651134_7653537_7653635_7655066_7655127_7656524
transcript_62011.nnic	chr4	-	960	9	NNC	ENSMUSG00000028433.15	novel	4380	29	NA	NA	3	-193	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	334.30073941737	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGTGTTGTTGATGTTT	-9	True	NA	NA	False	AATAAA	-18	NA	41275113	41221784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_41221954_41223355_41223460_41226279_41226335_41227198_41227277_41229694_41229849_41233603_41233715_41235516_41235595_41251534_41251672_41275039
transcript_62012.known	chr4	-	687	8	FSM	ENSMUSG00000028433.15	ENSMUST00000132499.2	687	8	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_7	316.890697695143	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAACCGCCAAGTAAAAGT	-12	True	NA	NA	False	NA	NA	NA	41275116	41221591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_41221622_41223355_41223460_41226279_41226335_41227198_41227277_41229694_41229849_41233603_41233715_41235516_41235595_41275039
transcript_62017.known	chr4	-	3442	9	FSM	ENSMUSG00000028436.9	ENSMUST00000030145.9	3442	9	0	0	0	0	multi-exon	FALSE	canonical	3	440	junction_1	50.3213113402264	705	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTTTGAGTGACTATATA	1860	False	NA	0	True	AATAAA	-18	NA	41314889	41291299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_41293215_41293932_41294112_41296310_41296474_41298285_41298352_41299406_41299601_41301333_41301395_41302613_41302821_41313210_41313466_41314487
transcript_6203.known	chr10	-	1405	1	FSM	ENSMUSG00000040006.14	ENSMUST00000188270.2	1405	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAAATTTCAACTCC	NA	False	NA	NA	False	NA	NA	NA	7668588	7667183	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_7667200_7668600
transcript_62035.known	chr4	+	3456	7	FSM	ENSMUSG00000028437.15	ENSMUST00000072866.12	3456	7	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_5	24.6981780704569	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGAGTTCTTAAATGTATG	NA	False	NA	NA	False	AATATA	-14	NA	41348995	41390525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_41349232_41366889_41366931_41371724_41371850_41378946_41379871_41387174_41387358_41388095_41388198_41388680
transcript_62038.known	chr4	+	2514	6	FSM	ENSMUSG00000028437.15	ENSMUST00000108060.10	2514	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	125.151108664686	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATGCTGCCTTAACCTC	NA	False	NA	5	True	AATAAA	-14	NA	41348995	41389766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_41349232_41366889_41366931_41371724_41371850_41378946_41379871_41388095_41388198_41388680
transcript_6204.known	chr10	+	3471	13	FSM	ENSMUSG00000015757.11	ENSMUST00000015901.11	3471	13	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_12	33.3716446503115	226	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGGCATGTGTTCTCTCT	1122	False	NA	14	True	NA	NA	NA	7668654	7698899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_7668785_7671407_7671476_7671560_7671626_7673521_7673640_7674178_7674322_7675316_7675414_7676497_7676615_7677608_7677734_7680719_7680787_7683034_7683147_7686125_7686223_7690427_7690576_7696715
transcript_62040.nic	chr4	+	1734	6	NIC	ENSMUSG00000028437.15	novel	3456	7	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_3	120.399335546339	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATGCTGCCTTAACCTC	-12	True	NA	5	True	AATAAA	-14	NA	41349034	41389766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_41349232_41366889_41366931_41371724_41371850_41387174_41387358_41388095_41388198_41388680
transcript_62045.nic	chr4	-	1744	6	NIC	ENSMUSG00000028438.17	novel	1756	7	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_4	11.0815161417561	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCCTAGCTTGGATACATA	-37	True	NA	NA	False	NA	NA	NA	41464891	41413547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_41414045_41414901_41415000_41423451_41423636_41428344_41428983_41429266_41429412_41464709
transcript_62049.known	chr4	-	1151	2	FSM	ENSMUSG00000028438.17	ENSMUST00000131532.2	1151	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAGAAAAATCTCTGTT	-33	True	NA	NA	False	AAGAAA	-16	NA	41464887	41454389	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_41455363_41464709
transcript_6205.known	chr10	+	535	3	FSM	ENSMUSG00000112109.2	ENSMUST00000219578.2	535	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTATTTGTGTTGTTG	NA	False	NA	NA	False	AATAAA	-21	NA	8051894	8069104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_8052100_8067084_8067222_8068911
transcript_62050.known	chr4	-	5593	13	FSM	ENSMUSG00000028438.17	ENSMUST00000108055.9	5593	13	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_12	8.49632273398321	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTACTCCAGGCTTTCT	14	True	NA	NA	False	NA	NA	NA	41464840	41390744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_41392253_41392877_41392972_41393437_41395664_41397546_41397657_41400436_41400509_41403789_41403896_41404676_41404799_41409731_41409820_41413828_41414045_41414901_41415000_41423451_41423636_41428344_41428983_41464709
transcript_62051.known	chr4	-	4333	10	FSM	ENSMUSG00000028438.17	ENSMUST00000030148.6	4333	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	13.8001610296563	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTTGTTTTGGTTTGG	6	True	NA	NA	False	TATAAA	-11	NA	41464848	41391610	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_41392253_41392877_41392972_41393437_41395664_41397546_41397657_41400436_41400509_41403789_41403896_41404676_41404799_41423451_41423636_41428344_41428983_41464709
transcript_62052.known	chr4	-	705	2	FSM	ENSMUSG00000028438.17	ENSMUST00000127376.2	705	2	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGATGTGCACACAAAATA	NA	False	NA	NA	False	NA	NA	NA	41404786	41403300	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_41403896_41404676
transcript_62059.known	chr4	+	845	3	FSM	ENSMUSG00000028443.7	ENSMUST00000030154.7	845	3	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	26.5	2317	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGATGCTTTCTTGGAC	4	True	NA	32	True	AATAAA	-28	NA	41465150	41480926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_41465181_41477513_41477648_41480245
transcript_6206.known	chr10	-	7183	20	FSM	ENSMUSG00000015305.7	ENSMUST00000015449.6	7183	20	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_11	2.30139064306057	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTGTTTCTCTGGTTGTT	783	False	NA	-9	True	AATAAA	-13	NA	8761814	8597982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_8601525_8603621_8603754_8605091_8606201_8609359_8609474_8615084_8615236_8615937_8616148_8617191_8617362_8618191_8618328_8620251_8620396_8621879_8621955_8626902_8627250_8632392_8632526_8656282_8656385_8659961_8660075_8662111_8662199_8665324_8665366_8690004_8690055_8690170_8690222_8726106_8726236_8761467
transcript_62060.known	chr4	-	4173	2	FSM	ENSMUSG00000046312.5	ENSMUST00000054920.5	4173	2	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTATTTGTTGTTTTCTTGCT	8	True	NA	-2	True	NA	NA	NA	41503076	41495603	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_41499691_41502990
transcript_62061.known	chr4	-	486	3	FSM	ENSMUSG00000028441.13	ENSMUST00000123865.8	486	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTGCTGTGTCCTTACT	-1	True	NA	NA	False	AATAAA	-17	NA	41507759	41505008	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_41505169_41505567_41505655_41507520
transcript_62062.known	chr4	-	652	4	FSM	ENSMUSG00000028441.13	ENSMUST00000123356.8	652	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTGCTGTGTCCTTACT	4	True	NA	NA	False	AATAAA	-17	NA	41507754	41505008	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_41505169_41505567_41505655_41507098_41507270_41507520
transcript_62063.known	chr4	-	721	4	FSM	ENSMUSG00000028441.13	ENSMUST00000124019.8	721	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTGCTGTGTCCTTACT	-6	True	NA	NA	False	AATAAA	-17	NA	41507764	41505008	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_41505169_41505567_41505655_41507098_41507329_41507520
transcript_6207.known	chr10	-	2149	3	FSM	ENSMUSG00000019832.6	ENSMUST00000019974.5	2149	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTTGTCACTTTATGTGT	NA	False	NA	NA	False	AATAAA	-21	NA	10434009	10420745	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_10422196_10426422_10426701_10433588
transcript_62071.known	chr4	+	965	4	FSM	ENSMUSG00000061322.16	ENSMUST00000143198.2	965	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.816496580927726	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTATTTGTTTTCTGTTC	1043	False	NA	NA	False	AATAAA	-25	NA	41631643	41638158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_41631788_41632139_41632489_41634961_41635148_41637872
transcript_62072.known	chr4	-	1269	2	FSM	ENSMUSG00000028445.8	ENSMUST00000127306.2	1269	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGGCCTTTATTTGTGC	9	True	NA	-1	True	AATAAA	-18	NA	41640324	41638143	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_41639002_41639913
transcript_62074.known	chr4	+	2009	13	FSM	ENSMUSG00000073889.11	ENSMUST00000098132.11	2009	13	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_1	3.12138680005467	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTCGTCTAATGTTGCT	3938	False	NA	4	True	AATAAA	-20	NA	41760195	41769474	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_41760552_41763581_41763682_41763824_41763886_41764708_41764879_41765006_41765122_41765274_41765308_41765385_41765553_41766110_41766275_41767459_41767602_41767945_41768072_41768168_41768266_41768492_41768576_41769079
transcript_62075.known	chr4	+	1768	13	FSM	ENSMUSG00000073889.11	ENSMUST00000108042.3	1768	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.0714111667687	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTCGTCTAATGTTGCT	1803	False	NA	4	True	AATAAA	-20	NA	41762308	41769474	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_41762424_41763581_41763682_41763824_41763886_41764708_41764879_41765006_41765122_41765274_41765308_41765385_41765553_41766110_41766275_41767459_41767602_41767945_41768072_41768168_41768266_41768492_41768576_41769079
transcript_62091.known	chr4	-	590	6	FSM	ENSMUSG00000073888.14	ENSMUST00000108037.9	590	6	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_3	16.7020956768904	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGTCTCTTTTATTTCA	28	False	NA	5	True	AATAAA	-28	NA	41774142	41769466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_41769655_41769843_41769977_41771137_41771236_41773464_41773525_41773735_41773804_41774099
transcript_62099.known	chr4	-	552	4	FSM	ENSMUSG00000073888.14	ENSMUST00000138337.8	552	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	40.1192666378083	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGTCTCTTTTATTTCA	633	False	NA	5	True	AATAAA	-28	NA	41773537	41769466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_41769655_41769843_41769977_41771137_41771296_41773464
transcript_62101.known	chr4	-	350	4	FSM	ENSMUSG00000073888.14	ENSMUST00000108032.3	350	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	26.6124448749494	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCACTGCCTCCCTGACTT	12	False	NA	NA	False	ATTAAA	-14	NA	41774158	41773187	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_41773351_41773464_41773525_41773735_41773804_41774099
transcript_62105.known	chr4	-	798	3	FSM	ENSMUSG00000073888.14	ENSMUST00000133572.8	798	3	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_2	8.5	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGAGAATCCTCTTTTCC	NA	False	NA	NA	False	NA	NA	NA	41774199	41772894	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_41773525_41773735_41773804_41774099
transcript_62107.known	chr4	-	487	2	FSM	ENSMUSG00000073888.14	ENSMUST00000143676.2	487	2	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGGATGTGGGGGAGTCCA	NA	False	NA	NA	False	GGGGCT	-40	NA	41774197	41773414	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_41773804_41774099
transcript_62108.known	chr4	-	856	2	FSM	ENSMUSG00000036114.4	ENSMUST00000038434.4	856	2	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_1	0	3504	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGGCCTGTTGTGTAAG	9620	False	NA	-17	True	AATAAA	-14	NA	41713534	41712032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_41712815_41713460
transcript_62109.known	chr4	-	885	6	FSM	ENSMUSG00000028447.12	ENSMUST00000171641.2	885	6	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	342.598657323697	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACAGTGGGGCATTGTAT	-9	True	NA	NA	False	GATAAA	-22	NA	41723163	41714797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_41715239_41716395_41716455_41717356_41717441_41719836_41719924_41720782_41720868_41723034
transcript_62110.known	chr4	-	973	7	FSM	ENSMUSG00000028447.12	ENSMUST00000030158.11	973	7	0	0	0	0	multi-exon	FALSE	canonical	3	869	junction_5	34.1829229619443	3285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACAGTGGGGCATTGTAT	-16	True	NA	NA	False	GATAAA	-22	NA	41723170	41714797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_41715260_41715395_41715456_41716395_41716455_41717356_41717441_41719836_41719924_41720782_41720868_41723034
transcript_62111.known	chr4	-	1640	4	FSM	ENSMUSG00000036078.17	ENSMUST00000059354.15	1640	4	0	0	0	0	multi-exon	FALSE	canonical	3	474	junction_2	54.2647829320883	3203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTTCCTTATGTGTCTAA	3747	False	NA	NA	False	AATAAA	-17	NA	41741359	41738492	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_41739581_41740549_41740643_41740775_41740977_41741101
transcript_62112.known	chr4	-	1547	3	FSM	ENSMUSG00000036078.17	ENSMUST00000071561.7	1547	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	290.5	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTTCCTTATGTGTCTAA	3747	False	NA	NA	False	AATAAA	-17	NA	41741359	41738492	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_41739581_41740775_41740977_41741101
transcript_62113.known	chr4	+	1595	11	FSM	ENSMUSG00000036073.19	ENSMUST00000084695.12	1595	11	0	0	0	0	multi-exon	FALSE	canonical	2	236	junction_6	31.3438989278615	2158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAGAGGAGTAGTGTGGA	-11	True	NA	32	True	AATAAA	-33	NA	41755227	41758695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_41755653_41755960_41756131_41756346_41756423_41756512_41756562_41756681_41756812_41756938_41756996_41757155_41757279_41757459_41757593_41757694_41757779_41758083_41758239_41758502
transcript_62114.known	chr4	+	1007	8	FSM	ENSMUSG00000036073.19	ENSMUST00000130698.8	1007	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	112.702787753218	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAGAGGAGTAGTGTGGA	378	False	NA	32	True	AATAAA	-33	NA	41756209	41758695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_41756423_41756512_41756562_41756938_41756996_41757155_41757279_41757459_41757593_41757694_41757779_41758083_41758239_41758502
transcript_62115.known	chr4	+	523	2	FSM	ENSMUSG00000073889.11	ENSMUST00000142059.2	523	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTCGTCTAATGTTGCT	6083	False	NA	4	True	AATAAA	-20	NA	41768447	41769474	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_41768576_41769079
transcript_62116.known	chr4	-	556	4	FSM	ENSMUSG00000073888.14	ENSMUST00000136768.8	556	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_3	19.3045763140937	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGTCTCTTTTATTTCA	569	False	NA	5	True	AATAAA	-28	NA	41773601	41769466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_41769655_41769843_41769977_41771137_41771236_41773464
transcript_62117.known	chr4	-	841	5	FSM	ENSMUSG00000073888.14	ENSMUST00000108036.8	841	5	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_3	18.6329680942141	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGTCTCTTTTATTTCA	73	False	NA	5	True	AATAAA	-28	NA	41774097	41769466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_41769655_41769843_41769977_41771137_41771236_41773464_41773525_41773735
transcript_62118.known	chr4	-	343	4	FSM	ENSMUSG00000073888.14	ENSMUST00000155240.2	343	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	39.8246155034798	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCACTGCCTCCCTGACTT	NA	False	NA	NA	False	ATTAAA	-14	NA	41774247	41773187	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_41773351_41773464_41773525_41773735_41773804_41774195
transcript_62119.known	chr4	-	493	4	FSM	ENSMUSG00000085730.8	ENSMUST00000141375.8	493	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATTTTTCCCTTATCGCT	NA	False	NA	NA	False	ATTAAA	-12	NA	41942092	41893277	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_41893441_41902345_41902426_41941205_41941292_41941928
transcript_62120.known	chr4	+	542	4	FSM	ENSMUSG00000073877.11	ENSMUST00000108018.9	542	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	20.3960780543711	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATCTCCAAAAACTTCCG	625	False	NA	NA	False	AATAAA	-14	NA	42154039	42158835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_42154177_42157045_42157144_42158339_42158473_42158661
transcript_62121.known	chr4	+	347	4	FSM	ENSMUSG00000073877.11	ENSMUST00000154600.2	347	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	3.55902608401044	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCCCACTGCCTCCCTGAC	69	False	NA	NA	False	ATTAAA	-12	NA	42153483	42154451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_42153543_42153838_42153906_42154116_42154177_42154290
transcript_62122.known	chr4	+	3093	4	FSM	ENSMUSG00000036052.15	ENSMUST00000098112.9	3093	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	4.32049379893857	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTATGGGGTTGTCTGTCC	-26	True	NA	NA	False	ATTAAA	-29	NA	42949866	42959425	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_42950005_42953140_42953386_42956525_42957128_42957317
transcript_62127.known	chr4	-	3316	17	FSM	ENSMUSG00000028452.8	ENSMUST00000030164.8	3316	17	0	0	0	0	multi-exon	FALSE	canonical	2	1390	junction_12	381.614124271823	7697	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCGTTCTGGCCACTAT	10011	False	NA	-15	True	AATAAA	-18	NA	43000507	42979962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_42980635_42980793_42980949_42982530_42982687_42982840_42983150_42983363_42983577_42984303_42984427_42984530_42984696_42985153_42985267_42985931_42986068_42986145_42986280_42988661_42988765_42990745_42990878_42993148_42993280_42993685_42993829_42995895_42996069_42996231_42996344_43000161
transcript_6213.known	chr10	+	5060	3	FSM	ENSMUSG00000047648.14	ENSMUST00000129456.8	5060	3	0	0	0	0	multi-exon	FALSE	canonical	3	746	junction_2	70.5	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAATTTTTGTTTTGTTTT	7592	False	NA	NA	False	AATAAA	-25	NA	11157073	11173796	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_11157245_11165263_11167317_11170960
transcript_62130.known	chr4	-	2771	14	FSM	ENSMUSG00000028453.11	ENSMUST00000030165.5	2771	14	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_11	17.9578731229673	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAAGTTGTATGTGTGTG	163	False	NA	-6	True	ATTAAA	-16	NA	43010355	43002342	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_43003093_43003226_43003345_43003782_43003933_43004558_43004606_43004743_43005034_43005210_43005278_43006461_43006614_43006749_43006897_43006983_43007115_43007267_43007404_43008710_43008914_43009147_43009280_43009706_43009801_43010001
transcript_62133.known	chr4	-	3525	11	FSM	ENSMUSG00000028454.17	ENSMUST00000067481.6	3525	11	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	53.2560794651653	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGCTAAGATCTGTGAGG	-7	True	NA	-7	True	AATAAA	-21	NA	43025819	43017634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_43018039_43018147_43018219_43019211_43019436_43019646_43019782_43020266_43021795_43022011_43022195_43022606_43022767_43023369_43023494_43023671_43023816_43024562_43025075_43025779
transcript_62134.nic	chr4	-	3602	11	NIC	ENSMUSG00000028454.17	novel	3525	11	NA	NA	-5	0	intron_retention	FALSE	canonical	3	84	junction_10	34.3634980757198	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGCTAAGATCTGTGAGG	-12	True	NA	-7	True	AATAAA	-21	NA	43025824	43017634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_43018039_43018147_43018219_43019211_43019436_43019646_43019854_43020266_43021795_43022011_43022195_43022606_43022767_43023369_43023494_43023671_43023816_43024562_43025075_43025779
transcript_62136.nnic	chr4	-	1132	5	NNC	ENSMUSG00000028454.17	novel	4239	10	NA	NA	-1359	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_4	84.0992716972032	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGCTAAGATCTGTGAGG	9377	False	NA	-7	True	AATAAA	-21	NA	43021065	43017634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_43018039_43018147_43018219_43019211_43019436_43019646_43019854_43020839
transcript_62138.known	chr4	-	491	4	FSM	ENSMUSG00000028454.17	ENSMUST00000155429.2	491	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	88.8644410824087	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGCTGTGCTCGTTGGCGT	6106	False	NA	NA	False	NA	NA	NA	43019706	43017906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_43018039_43018147_43018219_43019211_43019440_43019646
transcript_62139.known	chr4	-	2312	11	FSM	ENSMUSG00000028454.17	ENSMUST00000149333.8	2312	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	54.7749030122373	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGCTAAGATCTGTGAGG	6351	False	NA	-7	True	AATAAA	-21	NA	43025080	43017634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_43018039_43018147_43018219_43019211_43019436_43019646_43019854_43020266_43020319_43021569_43021795_43022011_43022195_43022606_43022767_43023369_43023494_43023671_43023816_43024562
transcript_62146.known	chr4	-	943	9	FSM	ENSMUSG00000028455.16	ENSMUST00000136326.8	943	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	1045.30593607805	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAGAGATGTCCAGGCTA	8843	False	NA	NA	False	GGGGCT	-45	NA	43031456	43028228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_43028294_43028937_43029067_43029278_43029359_43029492_43029638_43029769_43029905_43030048_43030151_43030239_43030299_43030435_43030536_43031328
transcript_62149.known	chr4	-	3280	9	FSM	ENSMUSG00000036002.13	ENSMUST00000107958.8	3280	9	0	0	0	0	multi-exon	TRUE	canonical	3	8	junction_8	13.7636296085008	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACCTCTACTTTTTTTTG	11	True	NA	2	True	AATAAA	-21	NA	43040288	43032413	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_43033689_43033811_43033988_43034084_43034154_43034375_43034535_43034658_43034765_43034942_43035002_43035835_43036805_43037062_43037207_43039965
transcript_6215.nic	chr10	+	485	2	ISM	ENSMUSG00000047648.14	ENSMUST00000129456.8	5060	3	-51	8270	-51	-5736	5prime_fragment	FALSE	canonical	3	887	junction_1	0	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCCTGCAAGTGTGGTG	7541	False	NA	NA	False	AATAAA	-20	NA	11157022	11165526	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_11157245_11165263
transcript_62150.known	chr4	-	3107	9	FSM	ENSMUSG00000036002.13	ENSMUST00000107956.8	3107	9	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_5	6.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACCTCTACTTTTTTTTG	409	False	NA	2	True	AATAAA	-21	NA	43045797	43032413	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_43033689_43033811_43033988_43034084_43034154_43034375_43034535_43034658_43034765_43034942_43035002_43035835_43036805_43037062_43037207_43045647
transcript_62155.known	chr4	+	593	4	FSM	ENSMUSG00000096974.3	ENSMUST00000180426.3	593	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.69967317119759	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCAGGTGTCCTGCTCTGT	5	True	NA	NA	False	NA	NA	NA	43046033	43053254	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_43046278_43051236_43051378_43052944_43053052_43053153
transcript_62157.known	chr4	+	551	4	FSM	ENSMUSG00000096974.3	ENSMUST00000211208.2	551	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	2.05480466765633	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCAGGTGTCCTGCTCTGT	13	True	NA	NA	False	NA	NA	NA	43046041	43053254	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_43046244_43051236_43051378_43052944_43053052_43053153
transcript_6216.nic	chr10	+	2514	2	ISM	ENSMUSG00000047648.14	ENSMUST00000129456.8	5060	3	-51	6241	-51	-3707	5prime_fragment	FALSE	canonical	3	887	junction_1	0	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTTTTCACAGTGACT	7541	False	NA	NA	False	NA	NA	NA	11157022	11167555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_11157245_11165263
transcript_62161.known	chr4	+	551	3	FSM	ENSMUSG00000096974.3	ENSMUST00000209785.2	551	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACATCAGGTGTCCTGCTC	NA	False	NA	NA	False	NA	NA	NA	43045965	43053251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_43046278_43051236_43051378_43053153
transcript_62162.nic	chr4	+	505	3	NIC	ENSMUSG00000096974.3	novel	551	3	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	2.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACATCAGGTGTCCTGCTC	NA	False	NA	NA	False	NA	NA	NA	43045977	43053251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_43046244_43051236_43051378_43053153
transcript_62163.known	chr4	-	3074	9	FSM	ENSMUSG00000036002.13	ENSMUST00000036462.12	3074	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	15.8779524813497	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACCTCTACTTTTTTTTG	NA	False	NA	2	True	AATAAA	-21	NA	43046220	43032413	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_43033689_43033811_43033988_43034084_43034154_43034375_43034535_43034658_43034765_43034942_43035002_43035835_43036805_43037062_43037207_43046103
transcript_62169.nic	chr4	+	1335	3	ISM	ENSMUSG00000035969.16	ENSMUST00000173682.8	4256	11	10877	-439	1982	0	3prime_fragment	FALSE	canonical	3	25	junction_2	9.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATTTTCTTTGTGCCCCT	9411	False	NA	17	True	AATAAA	-19	NA	43425572	43427088	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_43426129_43426227_43426366_43426447
transcript_6217.known	chr10	+	613	1	FSM	ENSMUSG00000045455.9	ENSMUST00000052902.9	613	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1997	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAACTGTATATGGGACT	NA	False	NA	NA	False	GATAAA	-17	NA	11484966	11485579	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_11485000_11485600
transcript_62170.known	chr4	+	5093	10	FSM	ENSMUSG00000035969.16	ENSMUST00000131668.3	5093	10	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_4	4.94413232473044	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATTTTCTTTGTGCCCCT	8143	False	NA	17	True	AATAAA	-19	NA	43414695	43427088	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_43416719_43421604_43422250_43422440_43422627_43422718_43422860_43423674_43423752_43423919_43424095_43424183_43424290_43424897_43424945_43425296_43426129_43426227
transcript_62171.known	chr4	+	817	6	FSM	ENSMUSG00000028461.13	ENSMUST00000030181.12	817	6	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_5	16.9162643630324	1700	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGTGTTCCTCTGTGCTT	-26	True	NA	14	True	AGTAAA	-45	NA	43493361	43495921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_43493537_43493607_43493760_43495194_43495256_43495341_43495433_43495508_43495622_43495696
transcript_62172.known	chr4	+	865	5	FSM	ENSMUSG00000028461.13	ENSMUST00000107922.3	865	5	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_4	11.5433963806152	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGTGTTCCTCTGTGCTT	1	True	NA	14	True	AGTAAA	-45	NA	43493388	43495921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_43493537_43493607_43493760_43495194_43495256_43495341_43495433_43495508
transcript_62173.known	chr4	+	863	4	FSM	ENSMUSG00000028461.13	ENSMUST00000137113.2	863	4	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_1	2.94392028877595	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAAATGGGGAACAACCAC	29	True	NA	-36	True	GGGGCT	-40	NA	43493416	43495871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_43493537_43493607_43493760_43495194_43495256_43495341
transcript_62177.known	chr4	-	1659	9	FSM	ENSMUSG00000051517.15	ENSMUST00000054538.13	1659	9	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_3	13.833270582187	413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTCCTGTCTAAATCACG	9051	False	NA	-3	True	AATAAA	-18	NA	43499695	43496141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_43496721_43496820_43496910_43497086_43497317_43497581_43497711_43497958_43498030_43498585_43498705_43498895_43499017_43499242_43499338_43499469
transcript_62178.known	chr4	-	2595	4	FSM	ENSMUSG00000051517.15	ENSMUST00000128754.8	2595	4	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_2	13.1233464566864	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCCTTCCTGTCTAAAT	28	True	NA	-7	True	AATAAA	-14	NA	43499619	43496145	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_43498030_43498585_43498705_43498895_43499338_43499469
transcript_62179.known	chr4	-	978	3	FSM	ENSMUSG00000087142.8	ENSMUST00000139119.2	978	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGAGACCAGTTCTTAC	-1	True	NA	NA	False	AATAAA	-16	NA	43508747	43505656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_43506285_43507776_43507964_43508584
transcript_62181.known	chr4	-	1164	9	FSM	ENSMUSG00000028464.17	ENSMUST00000107914.10	1164	9	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	2.31503239718152	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGGCCCTTTAAGCCT	9769	False	NA	-14	True	AATAAA	-16	NA	43523595	43514710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_43514862_43518229_43518300_43518401_43518465_43519002_43519079_43519226_43519298_43519388_43519507_43519610_43519745_43522674_43522801_43523240
transcript_62183.known	chr4	-	2175	9	FSM	ENSMUSG00000028464.17	ENSMUST00000030184.12	2175	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.8309518948453	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGGCCCTTTAAGCCT	-1	True	NA	-14	True	AATAAA	-16	NA	43523464	43514710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_43516004_43518229_43518300_43518401_43518465_43519002_43519079_43519226_43519298_43519388_43519507_43519610_43519745_43522674_43522801_43523240
transcript_62187.known	chr4	+	1292	9	FSM	ENSMUSG00000028468.16	ENSMUST00000030190.9	1292	9	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_8	1.21834929310112	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTCAACCCCTGGACTC	10	True	NA	NA	False	AAGAAA	-4	NA	43578957	43583130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_43579008_43579374_43579510_43579886_43580024_43580295_43580380_43580476_43580627_43580863_43581011_43581187_43581316_43581486_43581677_43582859
transcript_62188.known	chr4	+	5888	9	FSM	ENSMUSG00000028468.16	ENSMUST00000107886.9	5888	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.96452920568771	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTAAGTGTCTAATTTAAA	-26	True	NA	10	True	AATAAA	-14	NA	43578714	43587487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_43579004_43579374_43579510_43579886_43580024_43580295_43580380_43580476_43580627_43580863_43581011_43581187_43581316_43581486_43581677_43582859
transcript_62193.known	chr4	-	937	2	FSM	ENSMUSG00000028465.17	ENSMUST00000123985.2	937	2	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	0	429	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCTTCATATTTTTAAAA	NA	False	NA	-30	True	NA	NA	NA	43562691	43559342	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_43559718_43562129
transcript_62194.known	chr4	+	1884	9	FSM	ENSMUSG00000028466.16	ENSMUST00000102944.11	1884	9	0	0	0	0	multi-exon	TRUE	canonical	3	77	junction_5	10.0615294563004	209	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCCTTTTTACTGGCACA	6408	False	NA	5	True	AATAAA	-14	NA	43562331	43567060	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_43562960_43563049_43563207_43563280_43563352_43563468_43563559_43565260_43565368_43565466_43565536_43566119_43566205_43566293_43566379_43566468
transcript_62195.known	chr4	+	1635	10	FSM	ENSMUSG00000028468.16	ENSMUST00000117140.8	1635	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	2.10818510677892	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTTAAGTGTCTAATTTA	-6	True	NA	8	True	AATAAA	-12	NA	43578734	43587485	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_43579008_43579374_43579510_43579886_43580024_43580295_43580380_43580476_43580627_43580863_43581011_43581187_43581316_43581486_43581677_43582859_43582973_43587207
transcript_62196.known	chr4	-	1549	7	FSM	ENSMUSG00000066196.12	ENSMUST00000084646.11	1549	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCTAATTCATTGATTCT	-3	True	NA	NA	False	CATAAA	-17	NA	43653552	43651334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_43651655_43651746_43651810_43651927_43652043_43652116_43652163_43652344_43652520_43652640_43653422_43653503
transcript_62199.known	chr4	-	610	5	FSM	ENSMUSG00000028470.11	ENSMUST00000030192.5	610	5	0	0	0	0	multi-exon	FALSE	canonical	3	693	junction_3	25.1433390781734	3984	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTGTATCCCTGTCTTA	-12	True	NA	-7	True	AATAAA	-14	NA	43656466	43654228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_43654412_43654512_43654586_43654715_43654821_43654905_43655047_43656358
transcript_62200.known	chr4	-	564	5	FSM	ENSMUSG00000028470.11	ENSMUST00000130593.8	564	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	318.057384759417	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTATCCCTGTCTTAAA	6	True	NA	-5	True	AATAAA	-16	NA	43656448	43654226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_43654412_43654512_43654586_43654715_43654791_43654905_43655047_43656358
transcript_62201.known	chr4	-	398	2	FSM	ENSMUSG00000028470.11	ENSMUST00000134082.2	398	2	0	0	0	0	multi-exon	FALSE	canonical	3	745	junction_1	0	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTGTATCCCTGTCTTA	7288	False	NA	-7	True	AATAAA	-14	NA	43654727	43654228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_43654412_43654512
transcript_62203.known	chr4	+	2320	5	FSM	ENSMUSG00000028480.15	ENSMUST00000030202.14	2320	5	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_4	22.0567450001128	360	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTCCTCTAATGCGATT	NA	False	NA	36	True	AATAAA	-21	NA	43957400	43979118	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_43957774_43968111_43968221_43968571_43968676_43970499_43970578_43977462
transcript_6222.nic	chr10	-	618	4	ISM	ENSMUSG00000019820.12	ENSMUST00000217994.2	3161	25	219	117154	219	-100276	5prime_fragment	FALSE	canonical	3	18	junction_3	45.085104709501	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGACAACCAACCAAGC	NA	False	NA	NA	False	NA	NA	NA	12490356	12377085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_12377252_12401081_12401239_12413784_12413958_12490234
transcript_62221.known	chr4	+	1031	5	FSM	ENSMUSG00000028478.19	ENSMUST00000107845.4	1031	5	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	565.255860208455	1399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATGAAGCATCTTTAATT	8	True	NA	21	True	AATAAA	-21	NA	44012685	44032846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_44013003_44018812_44018851_44019873_44019992_44025448_44025561_44032400
transcript_62222.known	chr4	+	1099	6	FSM	ENSMUSG00000028478.19	ENSMUST00000107849.10	1099	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	631.636794368409	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATGAAGCATCTTTAATT	0	True	NA	21	True	AATAAA	-21	NA	44012677	44032846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_44013009_44018812_44018851_44019873_44019992_44025448_44025561_44030214_44030269_44032400
transcript_62224.known	chr4	-	2920	12	FSM	ENSMUSG00000028479.19	ENSMUST00000102936.9	2920	12	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_9	6.79693659727954	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGATATCTGGTCCCAGAA	240	False	NA	-6	True	NA	NA	NA	44072778	44036825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_44037354_44038946_44039064_44040253_44040437_44041662_44041885_44042162_44042293_44044758_44044970_44045902_44045991_44052770_44052984_44055204_44055358_44059775_44060228_44066754_44066961_44072361
transcript_62226.nic	chr4	-	1402	4	ISM	ENSMUSG00000028479.19	ENSMUST00000102936.9	2920	12	43	18162	1	317	5prime_fragment	FALSE	canonical	3	48	junction_1	9.97775303139718	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCGCCGGGTGCAGTTTGC	283	False	NA	NA	False	AATAAA	-15	NA	44072735	44054987	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_44055358_44059775_44060228_44066754_44066961_44072361
transcript_62229.nnic	chr4	+	400	2	Antisense	novelGene_ENSMUSG00000028479.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGATCATGTGCGTTAC	NA	False	NA	NA	False	AATAAA	-22	NA	44050018	44050735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr4_+_44050119_44050435
transcript_62234.known	chr4	+	2955	18	FSM	ENSMUSG00000035683.14	ENSMUST00000045607.12	2955	18	0	0	0	0	multi-exon	FALSE	canonical	2	288	junction_12	49.6985375708199	751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAATAGCACTGTTTCT	NA	False	NA	NA	False	ATTAAA	-11	NA	44300875	44364675	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_44301073_44303570_44303667_44306031_44306118_44306989_44307107_44308905_44309050_44310289_44310359_44312163_44312257_44318023_44318123_44324199_44324269_44325640_44325740_44332879_44332967_44340625_44340746_44344912_44345024_44347123_44347356_44349843_44349941_44350941_44351111_44360871_44360976_44363709
transcript_62242.nic	chr4	+	600	2	ISM	ENSMUSG00000035683.14	ENSMUST00000045607.12	2955	18	1	60701	1	-14096	5prime_fragment	FALSE	canonical	3	522	junction_1	0	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTTGAATTTATTTTAG	NA	False	NA	NA	False	NA	NA	NA	44300876	44303974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_44301073_44303570
transcript_62245.nnic	chr4	+	2653	10	NNC	ENSMUSG00000035649.18	novel	2503	9	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_6	47.5090634627869	198	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTTTATTGTTACAAAAG	-19	True	NA	NA	False	AATAAA	-26	NA	44756558	44932215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_44756693_44761849_44762475_44893532_44893571_44894915_44895042_44895818_44895990_44908450_44908487_44916183_44916313_44925974_44926071_44929117_44929236_44931035
transcript_62246.known	chr4	+	2503	9	FSM	ENSMUSG00000035649.18	ENSMUST00000107824.9	2503	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	42.9270820694815	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGTAAATAAATGTGTTTA	-10	True	NA	NA	False	AATAAA	-14	NA	44756567	44932203	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_44756693_44761849_44762475_44893532_44893571_44894915_44895042_44895818_44895990_44908450_44908487_44925974_44926071_44929117_44929236_44931035
transcript_62250.known	chr4	+	437	2	FSM	ENSMUSG00000035649.18	ENSMUST00000143385.2	437	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACTTCTCATTCTAATAAA	-7	True	NA	NA	False	AAGAAA	-42	NA	44756638	44762228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_44756697_44761849
transcript_62252.known	chr4	+	1280	9	FSM	ENSMUSG00000035637.15	ENSMUST00000045078.13	1280	9	0	0	0	0	multi-exon	FALSE	canonical	3	277	junction_3	33.5326333591622	1542	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTTTGTGTTTGCTGAC	-31	True	NA	13	True	NA	NA	NA	44981394	44990734	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_44981535_44982878_44983010_44983873_44983947_44984429_44984547_44985306_44985396_44986285_44986391_44987215_44987352_44988919_44989051_44990376
transcript_62253.known	chr4	-	4316	2	FSM	ENSMUSG00000049657.10	ENSMUST00000055028.9	4316	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACACGGTCTCCTTTGCTTC	NA	False	NA	0	True	ATTAAA	-26	NA	45012394	44991241	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_44995387_45012223
transcript_62256.known	chr4	+	2986	12	FSM	ENSMUSG00000028318.15	ENSMUST00000133157.8	2986	12	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_4	16.5753974809925	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAATGCTGACGACAATAT	5049	False	NA	33	True	ATTAAA	-15	NA	45018582	45033692	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_45018793_45019273_45019378_45022207_45022285_45023192_45023279_45025769_45025829_45026763_45026909_45027363_45027472_45028002_45028100_45029337_45029472_45030752_45030835_45031366_45031499_45031940
transcript_6226.known	chr10	-	5751	25	FSM	ENSMUSG00000019820.12	ENSMUST00000219003.2	5751	25	0	0	0	0	multi-exon	TRUE	canonical	3	61	junction_24	17.9698339045066	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTTGATGTTTGGCTGT	NA	False	NA	-3	True	AATAAA	-19	NA	12424623	12257933	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_12259941_12261261_12261285_12277054_12277148_12278626_12278736_12281597_12281839_12282179_12282339_12289679_12289746_12290924_12290991_12291194_12291234_12297340_12297478_12312024_12312137_12315370_12315538_12317679_12317838_12323750_12323837_12331106_12331309_12339029_12339105_12340924_12340987_12351014_12351076_12354156_12354236_12356967_12357115_12362129_12362399_12377121_12377252_12401081_12401239_12413784_12413958_12423690
transcript_62262.known	chr4	+	1470	12	FSM	ENSMUSG00000028318.15	ENSMUST00000107814.10	1470	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	55.1102576283923	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGAAAGAGCAACTGAC	15	True	NA	NA	False	AAAACA	-3	NA	45018662	45036565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_45018793_45019273_45019378_45022207_45022285_45023192_45023279_45025769_45025829_45026763_45026909_45027363_45027472_45028002_45028100_45029337_45029472_45030752_45030835_45031366_45031499_45036249
transcript_62268.known	chr4	-	738	3	FSM	ENSMUSG00000078713.9	ENSMUST00000107809.9	738	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	3	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCGTGGTTTTGTGTTTT	60	False	NA	NA	False	AATAAA	-14	NA	45108038	45105211	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_45105645_45106614_45106794_45107912
transcript_62269.known	chr4	-	679	3	FSM	ENSMUSG00000078713.9	ENSMUST00000107808.3	679	3	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_2	2	827	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCGTGGTTTTGTGTTTT	-10	True	NA	NA	False	AATAAA	-14	NA	45108108	45105211	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_45105645_45106838_45106889_45107912
transcript_6227.known	chr10	-	1050	3	FSM	ENSMUSG00000097378.9	ENSMUST00000181073.9	1050	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATACACAGTGAGTGAGTT	NA	False	NA	NA	False	AATAAA	-13	NA	12798834	12792391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_12792816_12797352_12797462_12798317
transcript_62271.known	chr4	-	442	2	FSM	ENSMUSG00000078713.9	ENSMUST00000107807.2	442	2	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	0	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCCATGAACTCCACCCCT	-10	True	NA	NA	False	AAAAAG	-26	NA	45108108	45105394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_45105645_45107916
transcript_62272.known	chr4	-	639	2	FSM	ENSMUSG00000078713.9	ENSMUST00000107810.3	639	2	0	0	0	0	multi-exon	FALSE	canonical	3	2176	junction_1	0	18493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGGTTTTGTGTTTTTAAT	-16	True	NA	NA	False	AATAAA	-18	NA	45108114	45105207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_45105645_45107912
transcript_62274.known	chr4	+	2064	9	FSM	ENSMUSG00000035601.10	ENSMUST00000044673.9	2064	9	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_1	41.8103979292233	264	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGGAAAAAAAAACTGAATA	NA	False	NA	NA	False	ATTAAA	-25	NA	45297126	45316131	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_45297196_45300416_45300628_45301235_45301351_45304263_45304389_45305743_45305897_45307891_45307971_45308496_45308565_45314282_45314407_45315011
transcript_62292.known	chr4	-	1077	4	FSM	ENSMUSG00000028322.12	ENSMUST00000030003.10	1077	4	0	0	0	0	multi-exon	FALSE	canonical	3	481	junction_1	46.9065264352651	3189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTGTAGTTCTACAGT	-22	True	NA	-1	True	AATAAA	-17	NA	45320629	45316612	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_45317029_45317677_45317830_45319549_45319700_45320270
transcript_6230.known	chr10	+	1237	8	FSM	ENSMUSG00000019817.19	ENSMUST00000193426.6	1237	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	54.2387014473418	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGTGTGCACCCTGGAGC	NA	False	NA	NA	False	NA	NA	NA	12936247	13003098	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_12936604_12957219_12957267_12960381_12960509_12988262_12988295_12989901_12989965_12992439_12992526_13000599_13000913_13002885
transcript_62302.known	chr4	-	825	3	FSM	ENSMUSG00000028322.12	ENSMUST00000130843.2	825	3	0	0	0	0	multi-exon	FALSE	canonical	3	580	junction_2	0.5	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAATCTGTGCTGCATGTA	3	True	NA	NA	False	NA	NA	NA	45320604	45317488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_45317830_45319549_45319700_45320270
transcript_62303.known	chr4	-	4438	3	FSM	ENSMUSG00000045973.19	ENSMUST00000116341.4	4438	3	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_2	5.5	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCGGTTGCTCTTTGGAG	-22	True	NA	1	True	ATTAAA	-17	NA	45408766	45395922	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_45400180_45404726_45404836_45408694
transcript_62305.known	chr4	-	1005	2	FSM	ENSMUSG00000045973.19	ENSMUST00000132815.3	1005	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATCATTATGTGAGATG	-16	True	NA	NA	False	NA	NA	NA	45408760	45399240	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_45400180_45408694
transcript_62306.known	chr4	-	1022	2	FSM	ENSMUSG00000045973.19	ENSMUST00000134714.2	1022	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9	True	NA	13	True	NA	NA	NA	45408735	45407171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_45408153_45408694
transcript_62307.known	chr4	-	2244	6	FSM	ENSMUSG00000044813.16	ENSMUST00000061986.12	2244	6	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_2	2.71293199325011	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTATTAGTCGGGTTTTTT	454	False	NA	NA	False	AATAAA	-17	NA	45530330	45423277	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_45424124_45444678_45444799_45447505_45447678_45458126_45458343_45489054_45489176_45529561
transcript_62309.known	chr4	+	483	1	FSM	ENSMUSG00000081559.4	ENSMUST00000119140.2	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	155	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGGACACAAAGAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	45550016	45550499	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_45550000_45550500
transcript_6231.known	chr10	+	452	3	FSM	ENSMUSG00000019817.19	ENSMUST00000141944.8	452	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	37	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATTCTCCCTGTCCAAGG	3096	False	NA	NA	False	NA	NA	NA	12966617	12988528	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_12966765_12981598_12981638_12988262
transcript_62310.known	chr4	+	2298	2	FSM	ENSMUSG00000035561.6	ENSMUST00000044384.5	2298	2	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	0	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTATCACTGTTTTCCTT	-15	True	NA	12	True	ATTAAA	-26	NA	45799021	45804604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_45799170_45802454
transcript_62311.known	chr4	+	3716	17	FSM	ENSMUSG00000035517.18	ENSMUST00000102929.2	3716	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	2.54644359843292	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGATGTCTTAGTTTGCTT	73	False	NA	NA	False	AATAAA	-19	NA	45972232	46034761	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_45972437_45987461_45987675_45989077_45989220_45990049_45990231_45992196_45992271_45994306_45994525_46005116_46005701_46007454_46007642_46010789_46010902_46013065_46013269_46016868_46017004_46018529_46018617_46020804_46020940_46023394_46023506_46025656_46026160_46029646_46029808_46034295
transcript_62315.known	chr4	+	3010	23	FSM	ENSMUSG00000028330.9	ENSMUST00000030014.9	3010	23	0	0	0	0	multi-exon	TRUE	canonical	3	296	junction_19	36.3529529761015	202	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGGGAGTCATGGTTTAT	27	False	NA	21	True	AATAAA	-21	NA	46138612	46172403	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_46138887_46144784_46144874_46145373_46145475_46147378_46147536_46149861_46149970_46150638_46150761_46152015_46152086_46152909_46153126_46155749_46155848_46156759_46156824_46157822_46157934_46159658_46159724_46161260_46161324_46162091_46162167_46162960_46163065_46165165_46165289_46166737_46166841_46167301_46167396_46168450_46168555_46169128_46169244_46169944_46170074_46170471_46170586_46171892
transcript_6232.known	chr10	+	5260	6	FSM	ENSMUSG00000019817.19	ENSMUST00000121646.8	5260	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	38.4416440855487	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCTGTCTTTTCATTTA	3010	False	NA	18	True	AATAAA	-18	NA	12966531	13007438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_12966769_12981598_12981638_12988262_12988295_12992439_12992526_13000599_13000913_13002885
transcript_62324.nnic	chr4	-	2095	11	NNC	ENSMUSG00000035495.16	novel	3726	10	NA	NA	1	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	59.5519940891991	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGGAAGAGTGCTCTGTG	224	False	NA	0	True	AATAAA	-28	NA	46138474	46114742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_46115268_46116900_46117084_46119142_46119282_46119840_46120000_46120447_46120567_46124042_46124149_46124899_46125026_46129226_46129348_46131842_46132157_46135386_46135595_46138379
transcript_62326.known	chr4	-	2700	10	FSM	ENSMUSG00000035495.16	ENSMUST00000107770.2	2700	10	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_9	51.5344784502162	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAACTCCCCAAAACAA	-7	True	NA	NA	False	NA	NA	NA	46138438	46115731	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_46117084_46119142_46119282_46119840_46120000_46120447_46120567_46124042_46124149_46124899_46125026_46129226_46129348_46131842_46132157_46135386_46135592_46138379
transcript_62328.known	chr4	-	1547	6	FSM	ENSMUSG00000035495.16	ENSMUST00000160008.2	1547	6	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_5	18.8722017793367	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAAGAGTAACATTTA	18	True	NA	NA	False	NA	NA	NA	46138413	46123404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_46124149_46124899_46125026_46129226_46129348_46131842_46132157_46135386_46135595_46138379
transcript_62331.known	chr4	-	955	6	FSM	ENSMUSG00000028329.14	ENSMUST00000030013.12	955	6	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_2	5.6	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACGATGCAGTCTTCACAGA	4	True	NA	-1	True	AATAAA	-18	NA	46196311	46175221	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_46175416_46183117_46183236_46184287_46184454_46185590_46185697_46193049_46193158_46196048
transcript_62332.nic	chr4	-	1182	5	ISM	ENSMUSG00000035495.16	ENSMUST00000160008.2	1547	6	-61	1177	1	-1177	5prime_fragment	FALSE	canonical	3	160	junction_4	20.4633819296811	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTGGTTCTTTCAGCTGA	224	False	NA	NA	False	AATAAA	-1	NA	46138474	46124581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_46125026_46129226_46129348_46131842_46132157_46135386_46135595_46138379
transcript_62335.nic	chr4	-	587	2	ISM	ENSMUSG00000035495.16	ENSMUST00000160008.2	1547	6	-61	11698	1	399	5prime_fragment	FALSE	canonical	3	160	junction_1	0	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAGAAAGAAAAAA	224	False	NA	NA	False	NA	NA	NA	46138474	46135102	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_46135595_46138379
transcript_62336.known	chr4	-	729	5	FSM	ENSMUSG00000028329.14	ENSMUST00000132358.8	729	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	35.7657308047802	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACGATGCAGTCTTCACAGA	8677	False	NA	-1	True	AATAAA	-18	NA	46185649	46175221	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_46175416_46180206_46180399_46183117_46183236_46184287_46184454_46185590
transcript_62339.known	chr4	-	713	3	FSM	ENSMUSG00000087383.8	ENSMUST00000152069.2	713	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTTTTTGATTTTTGA	NA	False	NA	NA	False	GATAAA	-16	NA	46345515	46328463	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_46328974_46329721_46329823_46345413
transcript_62341.known	chr4	-	1527	5	FSM	ENSMUSG00000028331.13	ENSMUST00000030015.6	1527	5	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_4	13.5346776836392	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGTCTGAGCTTTGAAT	-14	True	NA	NA	False	ATTAAA	-27	NA	46389437	46379863	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_46380311_46382058_46382686_46386093_46386252_46387567_46387743_46389317
transcript_62343.nic	chr4	-	919	2	ISM	ENSMUSG00000028331.13	ENSMUST00000030015.6	1527	5	-17	7097	-17	-7097	5prime_fragment	FALSE	canonical	3	91	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTTAGAAATTTGGATACT	-31	True	NA	NA	False	NA	NA	NA	46389454	46386960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_46387743_46389317
transcript_6235.known	chr10	-	2297	11	FSM	ENSMUSG00000019814.6	ENSMUST00000019950.6	2297	11	0	0	0	0	multi-exon	FALSE	canonical	3	645	junction_7	42.5845042239545	852	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTAGGTTTTGATGAGAT	NA	False	NA	NA	False	ATTAAA	-16	NA	13068912	13053883	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_13054741_13054866_13055068_13055398_13055452_13055738_13055879_13056633_13056762_13058022_13058273_13058604_13058741_13061167_13061256_13066318_13066490_13067851_13067984_13068771
transcript_62367.known	chr4	+	1716	7	FSM	ENSMUSG00000028333.11	ENSMUST00000102926.5	1716	7	0	0	0	0	multi-exon	FALSE	canonical	3	5377	junction_1	313.520688666988	7166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTAGTTGTACTCTCACAT	4	True	NA	8	True	AATAAA	-20	NA	46450901	46472657	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_46451350_46460089_46460240_46463806_46463930_46468558_46468788_46469882_46470008_46471397_46471468_46472086
transcript_6237.known	chr10	+	2007	8	FSM	ENSMUSG00000019810.16	ENSMUST00000060212.13	2007	8	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_7	35.0731015021425	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTTCCCTCATATTCA	NA	False	NA	38	True	AATGAA	-24	NA	13376744	13391287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_13377118_13378814_13379003_13381482_13381823_13382449_13382661_13382978_13383170_13388361_13388471_13390450_13390619_13390860
transcript_62370.known	chr4	+	2179	6	FSM	ENSMUSG00000028334.11	ENSMUST00000030018.5	2179	6	0	0	0	0	multi-exon	FALSE	canonical	3	811	junction_3	76.1377698648969	1516	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTACTTTGATGTGTGTGT	NA	False	NA	14	True	NA	NA	NA	46489247	46503632	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_46489491_46492705_46492922_46499042_46499143_46500065_46500221_46500712_46500980_46502434
transcript_62376.known	chr4	-	4315	13	FSM	ENSMUSG00000039813.15	ENSMUST00000084621.12	4315	13	0	0	0	0	multi-exon	TRUE	canonical	2	8	junction_12	4.63381292481928	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGTCTGGGCTGCCTGA	-14	True	NA	1	True	AATAAA	-15	NA	46650209	46604389	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_46605969_46606382_46606505_46606969_46607156_46608982_46609104_46613947_46614425_46615026_46615209_46616253_46616365_46620446_46620822_46628340_46628538_46629875_46630010_46637588_46637737_46646116_46646259_46649668
transcript_62377.known	chr4	+	5756	9	FSM	ENSMUSG00000007613.16	ENSMUST00000007757.15	5756	9	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_2	37.2623721064561	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCAACATTCTTTTCTGGA	0	True	NA	33	True	AATAAA	-24	NA	47353221	47414931	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_47353397_47383748_47383995_47393246_47393490_47396354_47396586_47402802_47402971_47403369_47403527_47405528_47405654_47406921_47407053_47410651
transcript_62378.known	chr4	+	2861	9	FSM	ENSMUSG00000007613.16	ENSMUST00000044234.14	2861	9	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_2	41.6435769357052	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGCCACGTTGATACTAGG	13	False	NA	NA	False	AATGAA	-4	NA	47353306	47412133	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_47353397_47383748_47383995_47393258_47393490_47396354_47396586_47402802_47402971_47403369_47403527_47405528_47405654_47406921_47407053_47410651
transcript_62379.nic	chr4	+	487	2	ISM	ENSMUSG00000007613.16	ENSMUST00000044234.14	2861	9	-92	28080	-7	22740	5prime_fragment	FALSE	canonical	3	200	junction_1	0	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAGCTTCTAGACT	NA	False	NA	NA	False	NA	NA	NA	47353214	47384053	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_47353397_47383748
transcript_62380.known	chr4	-	3021	2	FSM	ENSMUSG00000039740.7	ENSMUST00000044148.3	3021	2	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	0	118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCCAGTTTATGGTTGCG	-17	True	NA	-2	True	AATAAA	-15	NA	47474333	47469832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_47472459_47473938
transcript_62384.known	chr4	+	564	4	FSM	ENSMUSG00000053317.12	ENSMUST00000065678.6	564	4	0	0	0	0	multi-exon	FALSE	canonical	3	2329	junction_2	60.4225859169308	23842	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTGCCTGTGCTTTATT	-22	True	NA	NA	False	AATAAA	-25	NA	47474657	47483242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_47474754_47474911_47475010_47480130_47480233_47482974
transcript_62387.known	chr4	+	430	4	FSM	ENSMUSG00000053317.12	ENSMUST00000137461.8	430	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1134.39528677911	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAGTGTAGTGATTTTCT	43	False	NA	42	True	NA	NA	NA	47474763	47483128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_47474840_47474911_47475010_47480130_47480233_47482974
transcript_62389.known	chr4	+	5770	8	FSM	ENSMUSG00000061455.14	ENSMUST00000107720.9	5770	8	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	8.24621125123532	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAATTCCTGTTGTATATT	5	True	NA	NA	False	AATAAA	-25	NA	48124925	48186507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_48124959_48131764_48131950_48140419_48140486_48158810_48159034_48166927_48167044_48167205_48167257_48180669_48180757_48181498
transcript_62412.known	chr4	-	2624	12	FSM	ENSMUSG00000028343.11	ENSMUST00000030028.5	2624	12	0	0	0	0	multi-exon	TRUE	canonical	3	625	junction_9	43.7020339182862	616	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATCAGCTTCCAGTTCTTA	20	True	NA	NA	False	AATAAA	-29	NA	48279558	48193322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_48194710_48196802_48196906_48204143_48204286_48205117_48205230_48208696_48208814_48211649_48211708_48218080_48218197_48219342_48219528_48236872_48236989_48241295_48241336_48243476_48243550_48279383
transcript_62414.known	chr4	+	1866	3	FSM	ENSMUSG00000028344.13	ENSMUST00000156602.2	1866	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	1.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAACCA	NA	False	NA	NA	False	NA	NA	NA	48279759	48309202	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_48279976_48283225_48283356_48307682
transcript_62419.known	chr4	-	3102	15	FSM	ENSMUSG00000028345.16	ENSMUST00000030030.15	3102	15	0	0	0	0	multi-exon	FALSE	canonical	3	662	junction_12	54.2776309771327	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCATGAGCTTCCTTCATA	NA	False	NA	-3	True	ATTAAA	-18	NA	48473459	48430857	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_48431084_48433107_48433319_48434901_48435084_48436436_48436518_48451925_48452060_48452892_48452982_48456733_48456912_48458537_48458714_48459250_48459387_48459863_48460103_48462768_48462882_48467663_48467905_48468280_48468994_48469883_48470073_48473265
transcript_62421.nic	chr4	-	2660	15	NIC	ENSMUSG00000028345.16	novel	3102	15	NA	NA	-31	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_12	196.22390636355	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCATGAGCTTCCTTCATA	NA	False	NA	-3	True	ATTAAA	-18	NA	48473490	48430857	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_48431084_48433107_48433319_48434901_48435084_48436436_48436518_48451925_48452060_48452892_48452982_48456733_48456912_48458537_48458714_48459250_48459387_48459863_48460103_48462768_48462882_48467663_48467905_48468753_48468994_48469883_48470073_48473265
transcript_62428.known	chr4	-	942	2	FSM	ENSMUSG00000028345.16	ENSMUST00000132911.2	942	2	0	0	0	0	multi-exon	FALSE	canonical	3	823	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAATAACTGAAG	4	True	NA	NA	False	TTTAAA	-35	NA	48473343	48469208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_48470073_48473265
transcript_6243.known	chr10	+	5741	7	FSM	ENSMUSG00000019810.16	ENSMUST00000121465.3	5741	7	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_3	15.7418409201578	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCACTAGCCCTTGACCTCT	NA	False	NA	NA	False	AATAAA	-20	NA	13376744	13394779	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_13377118_13378814_13379003_13381482_13381823_13382449_13382661_13382978_13383170_13388361_13388471_13390450
transcript_62436.known	chr4	+	1378	3	FSM	ENSMUSG00000039693.12	ENSMUST00000064807.9	1378	3	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	89	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTTGACTTTATCTTTT	2	True	NA	65	True	GATAAA	-14	NA	48540078	48561577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_48540272_48552379_48552831_48560843
transcript_62439.known	chr4	+	1589	3	FSM	ENSMUSG00000039693.12	ENSMUST00000061135.8	1589	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	140.5	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGTTACACTGTGTATGT	18	False	NA	14	True	NA	NA	NA	48539934	48561918	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_48539998_48552379_48552831_48560843
transcript_62442.known	chr4	+	1597	3	FSM	ENSMUSG00000039693.12	ENSMUST00000107704.2	1597	3	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	75.5	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGTTACACTGTGTATGTT	38	True	NA	15	True	NA	NA	NA	48540498	48561919	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_48540569_48552379_48552831_48560843
transcript_62444.nnic	chr4	+	2081	10	NNC	ENSMUSG00000028347.15	novel	489	5	NA	NA	134	0	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_1	163.477562926069	206	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTCTGCTTTGTGTGCTCA	382	False	NA	NA	False	AATATA	-15	NA	48585684	48663131	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_48585770_48604580_48604691_48610412_48610543_48614956_48614984_48617231_48617332_48636839_48636989_48638979_48639046_48650294_48650419_48658773_48658933_48662000
transcript_62447.known	chr4	-	2114	2	FSM	ENSMUSG00000044018.4	ENSMUST00000057829.4	2114	2	0	0	0	0	multi-exon	FALSE	canonical	3	1281	junction_1	0	2946	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTTTTAAAGTGTTATT	NA	False	NA	0	True	AATAAA	-21	NA	49521093	49512595	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_49514578_49520961
transcript_62448.known	chr4	+	2965	3	FSM	ENSMUSG00000039634.13	ENSMUST00000107696.2	2965	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	6.5	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAATAAAAAAAATGACCT	-39	True	NA	NA	False	AAGAAA	-35	NA	49521216	49531517	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_49521596_49522397_49522483_49529016
transcript_62449.known	chr4	-	2989	2	FSM	ENSMUSG00000039611.3	ENSMUST00000042750.3	2989	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAAAGAAACAAAGA	0	True	NA	NA	False	NA	NA	NA	49597876	49584505	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_49587242_49597623
transcript_62450.known	chr4	+	4154	21	FSM	ENSMUSG00000028309.15	ENSMUST00000029989.11	4154	21	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	16.7996279720713	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGTTTGTGGTGTTCT	-13	True	NA	5	True	ATTAAA	-17	NA	49632065	49656887	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_49632212_49632364_49632513_49633253_49633411_49637905_49638074_49638186_49638335_49638624_49638808_49642065_49642185_49644483_49644631_49645618_49645697_49645885_49646006_49648285_49648466_49649269_49649406_49649725_49649848_49649962_49650328_49651430_49651549_49652521_49652672_49653064_49653278_49654190_49654317_49654446_49654588_49655410_49655513_49655800
transcript_62459.known	chr4	+	5404	25	FSM	ENSMUSG00000028312.20	ENSMUST00000102915.10	5404	25	0	0	0	0	multi-exon	FALSE	canonical	3	347	junction_1	46.9361083164006	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTAGTACTACAGTTT	-19	True	NA	21	True	ATTAAA	-21	NA	52439242	52488260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_52439411_52440200_52440424_52442252_52442403_52445951_52446075_52447712_52447752_52449320_52449432_52449610_52449656_52450819_52451054_52451227_52451378_52457261_52457496_52458414_52458575_52459020_52459139_52460157_52460297_52461049_52461170_52462802_52463008_52465932_52466069_52467789_52467915_52469771_52469966_52470765_52470910_52474920_52475116_52476643_52476845_52478395_52478513_52481669_52481831_52484039_52484188_52486496
transcript_62460.known	chr4	+	5328	25	FSM	ENSMUSG00000028312.20	ENSMUST00000117280.8	5328	25	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_1	79.8595990195014	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTAGTACTACAGTTT	-19	True	NA	21	True	ATTAAA	-21	NA	52439242	52488260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_52439335_52440200_52440424_52442252_52442403_52445951_52446075_52447712_52447752_52449320_52449432_52449610_52449656_52450819_52451054_52451227_52451378_52457261_52457496_52458414_52458575_52459020_52459139_52460157_52460297_52461049_52461170_52462802_52463008_52465932_52466069_52467789_52467915_52469771_52469966_52470765_52470910_52474920_52475116_52476643_52476845_52478395_52478513_52481669_52481831_52484039_52484188_52486496
transcript_62463.nic	chr4	+	1663	11	ISM	ENSMUSG00000028312.20	ENSMUST00000102915.10	5404	25	-26	29686	-26	0	5prime_fragment	FALSE	canonical	3	347	junction_1	42.0171393600278	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTCTTAAATGTCCTTA	NA	False	NA	21	True	AAGAAA	-37	NA	52439216	52458574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_52439411_52440200_52440424_52442252_52442403_52445951_52446075_52447712_52447752_52449320_52449432_52449610_52449656_52450819_52451054_52451227_52451378_52457261_52457496_52458414
transcript_62469.nic	chr4	+	1069	8	ISM	ENSMUSG00000028312.20	ENSMUST00000102915.10	5404	25	-26	37257	-26	-325	5prime_fragment	FALSE	canonical	3	347	junction_1	45.1758468969553	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGGCTCTCAATTGTGAA	NA	False	NA	NA	False	AGTAAA	-36	NA	52439216	52451003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_52439411_52440200_52440424_52442252_52442403_52445951_52446075_52447712_52447752_52449320_52449432_52449610_52449656_52450819
transcript_62470.nic	chr4	+	986	8	ISM	ENSMUSG00000028312.20	ENSMUST00000117280.8	5328	25	-19	37257	-19	-325	5prime_fragment	FALSE	canonical	3	100	junction_1	120.799378292764	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGGCTCTCAATTGTGAA	NA	False	NA	NA	False	AGTAAA	-36	NA	52439223	52451003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_52439335_52440200_52440424_52442252_52442403_52445951_52446075_52447712_52447752_52449320_52449432_52449610_52449656_52450819
transcript_6248.known	chr10	-	2129	12	FSM	ENSMUSG00000019809.17	ENSMUST00000019945.15	2129	12	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_6	16.7987602848376	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTTTAGCCATTAATTT	NA	False	NA	NA	False	AATAAA	-34	NA	13428883	13399859	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_13400713_13403484_13403582_13407001_13407125_13408083_13408155_13410415_13410582_13411298_13411354_13411452_13411520_13411686_13411812_13413174_13413219_13418367_13418450_13422093_13422226_13428569
transcript_62481.known	chr4	+	1552	6	FSM	ENSMUSG00000015247.11	ENSMUST00000015391.10	1552	6	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_3	32.5785205311721	1292	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTATCAAGTGAGTCTT	NA	False	NA	10	True	AATAAA	-21	NA	53011879	53022060	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_53012048_53015014_53015226_53017048_53017208_53020181_53020332_53021110_53021198_53021283
transcript_62482.known	chr4	-	10262	50	FSM	ENSMUSG00000015243.5	ENSMUST00000030010.4	10262	50	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_41	9.14791223225713	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAAAGTTCCTTTTGTGCA	-3	True	NA	-3	True	AATAAA	-24	NA	53159895	53030786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_53034084_53035336_53035581_53036261_53036355_53036872_53036977_53038156_53038292_53038618_53038761_53040718_53040826_53041538_53041602_53042313_53042435_53042663_53042794_53044114_53044239_53045774_53045920_53046029_53046146_53048955_53049134_53050288_53050459_53050934_53051010_53059256_53059363_53060332_53060366_53061486_53061582_53062389_53062580_53065900_53066000_53067030_53067156_53068686_53068836_53069791_53069906_53070075_53070125_53071822_53072026_53072897_53072971_53074219_53074441_53075130_53075269_53075446_53075590_53076890_53077023_53077942_53078115_53079570_53079685_53080765_53080971_53081921_53082144_53083716_53083940_53084383_53084561_53085095_53085302_53085992_53086191_53089798_53089916_53090253_53090394_53092728_53092970_53095584_53095678_53107005_53107183_53109163_53109286_53127596_53127716_53128720_53128863_53132921_53133016_53143929_53144096_53159675
transcript_62486.nnic	chr4	+	496	3	Intergenic	novelGene_89	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGCAGAAGGGAGGCAGAA	NA	False	NA	NA	False	NA	NA	NA	53307550	53327627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr4_+_53307653_53319146_53319316_53327402
transcript_6249.known	chr10	-	1961	12	FSM	ENSMUSG00000019809.17	ENSMUST00000105539.2	1961	12	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_11	40.2069029063706	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATATAGCTTTGTTT	NA	False	NA	NA	False	AATAAA	-8	NA	13428864	13399885	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_13400713_13403484_13403582_13407001_13407125_13408083_13408155_13410415_13410582_13411298_13411354_13411452_13411520_13411686_13411812_13413174_13413219_13418367_13418450_13422093_13422226_13428692
transcript_62490.known	chr4	+	1503	13	FSM	ENSMUSG00000054752.17	ENSMUST00000163067.9	1503	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	9.31359520032708	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACTCAGTAATGGCAACT	60	False	NA	NA	False	NA	NA	NA	53631573	53701151	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_53631613_53646986_53647083_53647669_53647802_53649791_53649894_53655740_53655764_53659512_53659635_53679793_53680004_53682099_53682199_53686387_53686518_53693986_53694085_53694607_53694860_53696889_53696979_53701040
transcript_62492.known	chr4	+	2350	4	FSM	ENSMUSG00000054752.17	ENSMUST00000107643.8	2350	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	1.69967317119759	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	7	True	NA	NA	False	NA	NA	NA	53631489	53651790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_53631613_53646986_53647083_53647669_53647802_53649791
transcript_62495.known	chr4	+	6080	10	FSM	ENSMUSG00000028414.18	ENSMUST00000128667.8	6080	10	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	6.81501610008696	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTGTGTTTGTTTTTGA	1326	False	NA	5	True	AATAAA	-18	NA	53713997	53765785	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_53714196_53720006_53720210_53729979_53730040_53731131_53731336_53734849_53735128_53737526_53737660_53744618_53744749_53747008_53747143_53748368_53748497_53761173
transcript_62502.known	chr4	+	2862	6	FSM	ENSMUSG00000028420.14	ENSMUST00000030127.13	2862	6	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_3	9.52050418832952	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGGTATTCTTCTTC	-16	True	NA	NA	False	ATTAAA	-31	NA	53826044	53862019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_53826221_53840626_53840784_53848865_53849051_53850473_53850562_53854311_53854430_53859881
transcript_62505.nnic	chr4	+	1299	5	NIC	ENSMUSG00000028420.14	novel	2862	6	NA	NA	-21	-1427	combination_of_known_splicesites	FALSE	canonical	3	25	junction_1	42.4345083628879	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGTGTATACAGTTATTT	-37	True	NA	5	True	AATAAA	-14	NA	53826023	53860592	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_53826221_53848865_53849051_53850473_53850562_53854311_53854430_53859881
transcript_62508.nnic	chr4	+	1146	4	NIC	ENSMUSG00000028420.14	novel	2862	6	NA	NA	-53	-1427	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	56.8643610318058	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGTGTATACAGTTATTT	NA	False	NA	5	True	AATAAA	-14	NA	53825991	53860592	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_53826221_53850473_53850562_53854311_53854430_53859881
transcript_62511.known	chr4	+	689	3	FSM	ENSMUSG00000028420.14	ENSMUST00000151206.2	689	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	61	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGTTTATGACTCATG	-4	True	NA	NA	False	NA	NA	NA	53826056	53847844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_53826221_53840626_53840784_53847476
transcript_62516.known	chr4	+	363	3	FSM	ENSMUSG00000060206.12	ENSMUST00000133895.8	363	3	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	3.5	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTCAGCATATTACCCCTAA	-13	True	NA	NA	False	NA	NA	NA	54945047	55008314	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_54945102_55007532_55007783_55008255
transcript_62518.known	chr4	-	568	2	FSM	ENSMUSG00000087614.2	ENSMUST00000142782.2	568	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTTTTGTAAATAACATCT	NA	False	NA	NA	False	NA	NA	NA	55135501	55131435	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_55131677_55135174
transcript_62521.known	chr4	+	3810	10	FSM	ENSMUSG00000028426.11	ENSMUST00000030134.9	3810	10	0	0	0	0	multi-exon	FALSE	canonical	3	1075	junction_8	117.532764016184	2422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCATTTCTCATTTTTT	NA	False	NA	30	True	TATAAA	-20	NA	55350042	55392237	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_55350428_55366776_55366859_55368044_55368125_55370203_55370473_55378233_55378290_55380988_55381117_55382479_55382616_55383586_55383715_55385409_55385602_55389883
transcript_62529.known	chr4	+	2176	2	FSM	ENSMUSG00000028426.11	ENSMUST00000127266.2	2176	2	0	0	0	0	multi-exon	FALSE	canonical	3	1434	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAATAAAAAAATAAAA	-11	True	NA	NA	False	NA	NA	NA	55350049	55368574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_55350428_55366776
transcript_62531.nnic	chr4	-	499	3	Intergenic	novelGene_90	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTTCTTATAGAACCTAG	NA	False	NA	NA	False	NA	NA	NA	55434141	55410025	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr4_-_55410161_55410273_55410442_55433945
transcript_62534.known	chr4	-	362	2	FSM	ENSMUSG00000086346.2	ENSMUST00000152190.2	362	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTTCTGTTAGACTCCT	9576	False	NA	NA	False	NA	NA	NA	55465814	55450683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_55450930_55465698
transcript_62535.known	chr4	-	3029	5	FSM	ENSMUSG00000003032.9	ENSMUST00000107619.3	3029	5	0	0	0	0	multi-exon	FALSE	canonical	3	1140	junction_2	61.7267162580353	819	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGACAATCTCTTTGTTTTTT	9	True	NA	-7	True	AATAAA	-21	NA	55532466	55527142	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_55528301_55529717_55529883_55529998_55530984_55531629_55531751_55531866
transcript_62537.known	chr4	-	1439	1	FSM	ENSMUSG00000070980.5	ENSMUST00000095080.5	1439	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGTCATGTCTGGTCTGGAG	3	False	NA	NA	False	CATAAA	-15	NA	56741443	56740004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_56740000_56741400
transcript_62538.known	chr4	-	6160	37	FSM	ENSMUSG00000028431.12	ENSMUST00000030140.3	6160	37	0	0	0	0	multi-exon	TRUE	canonical	3	245	junction_24	36.3764927995411	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCCTCTCTCTTCTGCTGA	NA	False	NA	NA	False	AATGAA	-15	NA	56802331	56749679	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_56751720_56755303_56755380_56757116_56757272_56758212_56758341_56758963_56759076_56759800_56759915_56762248_56762310_56762840_56762904_56767814_56767877_56769013_56769216_56770980_56771079_56771432_56771557_56772380_56772530_56773015_56773102_56773198_56773337_56774521_56774602_56774687_56774767_56775016_56775091_56775424_56775541_56776689_56776796_56776884_56776939_56778958_56779063_56779656_56779764_56781025_56781218_56784537_56784638_56786587_56786753_56787740_56787972_56790130_56790225_56790887_56791012_56792026_56792118_56792384_56792482_56794089_56794176_56795505_56795587_56796503_56796586_56798657_56798811_56799974_56800138_56802158
transcript_62544.nnic	chr4	-	1487	11	NNC	ENSMUSG00000028431.12	novel	6160	37	NA	NA	10	-12617	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	95.5351244307558	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTTCATCTCAGAATTGGA	6	False	56802327	NA	False	AATAAA	-15	NA	56802321	56789082	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_56789436_56790130_56790225_56790887_56791012_56792026_56792118_56792384_56792482_56794089_56794176_56795505_56795587_56796503_56796586_56798657_56798811_56799974_56800138_56802158
transcript_62547.known	chr4	-	953	3	FSM	ENSMUSG00000028431.12	ENSMUST00000171411.8	953	3	0	0	0	0	multi-exon	FALSE	canonical	3	350	junction_1	22.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAATTGACTCAGTGGTAA	69	False	NA	-18	True	AATAAA	-18	NA	56757285	56751011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_56751720_56755303_56755380_56757116
transcript_62550.known	chr4	+	4275	6	FSM	ENSMUSG00000038827.12	ENSMUST00000045368.12	4275	6	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_2	10.8369737473153	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTTTCTGTGTACGTT	0	True	NA	13	True	AATAAA	-22	NA	56802348	56809601	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_56802727_56803595_56803648_56804153_56804284_56805681_56805759_56805877_56805948_56806033
transcript_62552.known	chr4	+	4360	6	FSM	ENSMUSG00000038827.12	ENSMUST00000131520.8	4360	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	52.8189359983709	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTTTCTGTGTACGTT	3	True	NA	13	True	AATAAA	-22	NA	56802351	56809601	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_56802727_56803507_56803648_56804153_56804284_56805681_56805759_56805877_56805948_56806033
transcript_62553.known	chr4	-	3664	19	FSM	ENSMUSG00000038816.15	ENSMUST00000045142.15	3664	19	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_15	25.8110417562564	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATACCGACTGGCTTAAT	-17	True	NA	-6	True	AATAAA	-21	NA	56865188	56810934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_56812389_56812510_56812595_56813177_56813292_56813829_56813887_56816180_56816230_56816988_56817144_56817246_56817298_56822517_56822556_56826273_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56847809_56848000_56864976
transcript_62555.nic	chr4	-	3391	18	NIC	ENSMUSG00000038816.15	novel	3664	19	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	86	junction_17	49.5178133688317	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATACCGACTGGCTTAAT	-16	True	NA	-6	True	AATAAA	-21	NA	56846092	56810934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_56812389_56812510_56812595_56813177_56813292_56813829_56813887_56816180_56816230_56816988_56817144_56817246_56817298_56822517_56822556_56826273_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56845963
transcript_62556.nic	chr4	-	2836	18	NIC	ENSMUSG00000038816.15	novel	3664	19	NA	NA	0	-555	combination_of_known_junctions	FALSE	canonical	3	86	junction_17	49.5178133688317	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTAGGATTTAAACCTTTT	-16	True	NA	-4	True	AATAAA	-19	NA	56846092	56811489	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_56812389_56812510_56812595_56813177_56813292_56813829_56813887_56816180_56816230_56816988_56817144_56817246_56817298_56822517_56822556_56826273_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56845963
transcript_62558.nic	chr4	-	2234	11	ISM	ENSMUSG00000038816.15	ENSMUST00000045142.15	3664	19	-87	14854	-87	214	5prime_fragment	FALSE	canonical	3	197	junction_7	32.0661815625122	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTGAGGACGTTCATTG	9342	False	NA	NA	False	CATAAA	-15	NA	56865275	56825788	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56847809_56848000_56864976
transcript_62561.nic	chr4	-	1874	10	NIC	ENSMUSG00000038816.15	novel	1956	12	NA	NA	0	214	combination_of_known_junctions	FALSE	canonical	3	86	junction_9	65.1103526690753	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTGAGGACGTTCATTG	-16	True	NA	NA	False	CATAAA	-15	NA	56846092	56825788	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56845963
transcript_62562.nic	chr4	-	1660	10	NIC	ENSMUSG00000038816.15	novel	1956	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	86	junction_9	65.1103526690753	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTGGATTTCCTACTGA	-16	True	NA	NA	False	AATAAA	-18	NA	56846092	56826002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56845963
transcript_62563.nic	chr4	-	1588	10	NIC	ENSMUSG00000038816.15	novel	1956	12	NA	NA	0	-72	combination_of_known_junctions	FALSE	canonical	3	86	junction_9	65.1103526690753	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTGTTTTGTTCTTATCT	-16	True	NA	NA	False	AATAAA	-28	NA	56846092	56826074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56845963
transcript_62564.known	chr4	-	654	5	FSM	ENSMUSG00000038816.15	ENSMUST00000131231.2	654	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	112.62548557054	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAACACTGTGCTCAGGG	NA	False	NA	NA	False	NA	NA	NA	56814319	56812139	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_56812389_56812510_56812595_56813177_56813292_56813829_56813887_56814169
transcript_62567.known	chr4	-	297	2	FSM	ENSMUSG00000038816.15	ENSMUST00000132764.2	297	2	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGTGACATCGAGAAACAAG	-16	True	NA	NA	False	NA	NA	NA	56846092	56844466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_56844635_56845963
transcript_62570.nnic	chr4	+	814	4	NNC	ENSMUSG00000085967.2	novel	1759	5	NA	NA	-7018	-694	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.471404520791032	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCAGTCATGCTTTATT	NA	False	NA	NA	False	NA	NA	NA	57165052	57175860	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_57165196_57174623_57174715_57174955_57175084_57175408
transcript_62575.known	chr4	+	6650	3	FSM	ENSMUSG00000038729.25	ENSMUST00000102903.8	6650	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	1	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTCTTTTTTTTTTTTCT	-6	True	NA	27	True	ATTAAA	-18	NA	57845246	57896982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_57845307_57854561_57857038_57892868
transcript_62576.known	chr4	-	2830	2	FSM	ENSMUSG00000052117.6	ENSMUST00000063816.6	2830	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTTTTTCTTCTCAATT	-3	True	NA	NA	False	NA	NA	NA	57916297	57908482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_57910612_57915596
transcript_62594.known	chr4	-	1051	5	FSM	ENSMUSG00000028367.6	ENSMUST00000030051.6	1051	5	0	0	0	0	multi-exon	TRUE	canonical	3	4612	junction_4	90.890043459116	41228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCATGAGTGTGACTGAT	24	False	NA	NA	False	AATAAA	-13	NA	57956411	57943372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_57943968_57945146_57945213_57950838_57950899_57951796_57951902_57956186
transcript_62597.known	chr4	-	3512	4	FSM	ENSMUSG00000038668.15	ENSMUST00000055018.11	3512	4	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_3	72.8941393772885	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGATGTGTGGTTCTGGTCTG	401	False	NA	-5	True	AATAAA	-22	NA	58553357	58435254	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_58437635_58486476_58487225_58504621_58504782_58553133
transcript_62598.nic	chr4	-	3468	4	NIC	ENSMUSG00000038668.15	novel	3512	4	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	105	junction_3	79.7927871983984	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGATGTGTGGTTCTGGTCTG	NA	False	NA	-5	True	AATAAA	-22	NA	58553909	58435254	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_58437635_58486476_58487225_58504621_58504782_58553729
transcript_6260.known	chr10	+	1466	6	FSM	ENSMUSG00000019808.9	ENSMUST00000019944.9	1466	6	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	288.190631353623	4261	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACCTGGTGTCATCCTTA	NA	False	NA	NA	False	NA	NA	NA	13428637	13439120	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_13429106_13432595_13432701_13435857_13436009_13437447_13437555_13438380_13438454_13438558
transcript_62610.known	chr4	-	2296	10	FSM	ENSMUSG00000028378.7	ENSMUST00000030069.7	2296	10	0	0	0	0	multi-exon	FALSE	canonical	3	293	junction_9	57.656068390259	2175	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGGCTGTGCCTTCTCT	5	True	NA	NA	False	NA	NA	NA	58987119	58965438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_58966764_58968758_58968878_58970990_58971100_58973534_58973691_58975860_58975979_58978013_58978182_58981826_58981884_58982879_58982926_58984743_58984860_58987037
transcript_62632.nnic	chr4	-	2569	12	NNC	ENSMUSG00000038598.10	novel	4664	28	NA	NA	-6731	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_10	5.11681719253465	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTAAGACCTATTGTAAG	NA	False	NA	NA	False	AATAAA	-12	NA	59117844	59081131	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_59082492_59084250_59084346_59085233_59085343_59086879_59086982_59092350_59092502_59093848_59093934_59094129_59094284_59099251_59099431_59109585_59109668_59111092_59111205_59113897_59113978_59117784
transcript_62633.known	chr4	-	3295	17	FSM	ENSMUSG00000038578.16	ENSMUST00000040166.14	3295	17	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	14.4566971936885	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTATTTGGGTTTTGTGGT	31	False	NA	NA	False	TATAAA	-21	NA	59438633	59314682	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_59315410_59315711_59315806_59324867_59324908_59329462_59329722_59332936_59333034_59349825_59350013_59351637_59351730_59365721_59365915_59369530_59369641_59379598_59379786_59380860_59380959_59390572_59390753_59411269_59411450_59412169_59412323_59423994_59424151_59427950_59428065_59438205
transcript_62649.known	chr4	-	2016	14	FSM	ENSMUSG00000028382.16	ENSMUST00000148331.9	2016	14	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_12	40.1538461538462	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGGGGGAAAAAATCAGGAAA	5	True	NA	NA	False	NA	NA	NA	59549314	59476647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_59477016_59477154_59477233_59481361_59481579_59482544_59482638_59485338_59485373_59485606_59485747_59488110_59488189_59493185_59493361_59494499_59494611_59501309_59501475_59514273_59514421_59517585_59517756_59524403_59524477_59549147
transcript_62653.nic	chr4	-	957	5	ISM	ENSMUSG00000028382.16	ENSMUST00000030076.12	6855	14	31	29235	-19	0	5prime_fragment	FALSE	canonical	3	122	junction_4	19.8918953345326	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59549333	59501102	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_59501475_59514273_59514421_59517585_59517756_59524394_59524477_59549147
transcript_62654.known	chr4	-	3409	15	FSM	ENSMUSG00000028382.16	ENSMUST00000102883.11	3409	15	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_12	53.5489953029857	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTTTTGTTAATTATTTC	5	True	NA	-18	True	NA	NA	NA	59549284	59475258	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_59477016_59477154_59477233_59481361_59481579_59482544_59482638_59485338_59485373_59485606_59485747_59488110_59488189_59493185_59493361_59494499_59494611_59501309_59501475_59514273_59514421_59517585_59517756_59524403_59524477_59546148_59546183_59549147
transcript_62655.known	chr4	+	2611	11	FSM	ENSMUSG00000028383.18	ENSMUST00000030078.12	2611	11	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	12.963024338479	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTATGTGCCTTTTATTTC	0	True	NA	20	True	NA	NA	NA	59581562	59618689	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_59581776_59592154_59592319_59593236_59593336_59594395_59594511_59596862_59596967_59597256_59597356_59601372_59601568_59606471_59606544_59610509_59610876_59612681_59612811_59617634
transcript_6266.known	chr10	-	1554	6	FSM	ENSMUSG00000019806.14	ENSMUST00000162610.8	1554	6	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	15.3179633110933	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGTCTGCACTGTTCA	NA	False	NA	0	True	AATAAA	-17	NA	13744724	13522797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_13523451_13529329_13529494_13566267_13566384_13677591_13677694_13704986_13705143_13744361
transcript_62666.known	chr4	-	3237	5	FSM	ENSMUSG00000038544.15	ENSMUST00000095063.11	3237	5	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_4	41.7814252988095	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTTACTGCATATGTTAA	-28	True	NA	NA	False	NA	NA	NA	59783866	59769636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_59772460_59773915_59774007_59775446_59775550_59782253_59782335_59783727
transcript_62671.known	chr4	-	1438	4	FSM	ENSMUSG00000038544.15	ENSMUST00000107526.8	1438	4	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_3	91.8416511659546	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTACTTTGTAAGGATCCT	30	True	NA	-6	True	ATTAAA	-18	NA	59783808	59771296	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_59772460_59773915_59774007_59775446_59775550_59783727
transcript_62677.known	chr4	-	1654	3	FSM	ENSMUSG00000038544.15	ENSMUST00000128548.2	1654	3	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_2	17	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCCTTATATAATTATTTT	0	True	NA	NA	False	AATAAA	-20	NA	59783838	59774087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_59775550_59782253_59782335_59783727
transcript_62685.known	chr4	-	1450	2	FSM	ENSMUSG00000038544.15	ENSMUST00000138097.2	1450	2	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAAAAAAAATACTAA	-11	True	NA	NA	False	AATGAA	-23	NA	59783849	59781006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_59782335_59783727
transcript_62687.known	chr4	+	642	7	FSM	ENSMUSG00000078689.9	ENSMUST00000107521.8	642	7	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	4.92442890089805	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAAGTGCAATCCTGGTT	16	False	NA	NA	False	NA	NA	NA	59964293	60007120	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_59964368_60003977_60004112_60004813_60004888_60005471_60005583_60005921_60006024_60006188_60006235_60007019
transcript_62689.nnic	chr4	+	835	6	NIC	ENSMUSG00000078689.9	novel	642	7	NA	NA	-85	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	9.24337600663307	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGTCTCTGTGTCCAGA	15	False	NA	NA	False	AATAAA	-21	NA	59964208	60007274	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_59964368_60003977_60004112_60004813_60004888_60005471_60005583_60005921_60006024_60007019
transcript_62690.nnic	chr4	+	772	6	NIC	ENSMUSG00000078689.9	novel	642	7	NA	NA	-110	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	8.40476055578028	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGTCTCTGTGTCCAGA	3	True	NA	NA	False	AATAAA	-21	NA	59964183	60007274	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_59964368_60004813_60004888_60005471_60005583_60005921_60006024_60006188_60006235_60007019
transcript_62693.known	chr4	-	927	7	FSM	ENSMUSG00000073842.11	ENSMUST00000079697.10	927	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGTCTTTGTGTCCAGA	64	False	NA	NA	False	AATAAA	-21	NA	60070411	60066469	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_60066723_60067509_60067556_60067719_60067822_60068164_60068276_60068900_60068975_60069732_60069867_60070204
transcript_62694.nnic	chr4	-	437	3	NNC	ENSMUSG00000084309.2	novel	389	4	NA	NA	1668	1118	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCTTTGACACACCCATGA	NA	False	NA	NA	False	AATAAA	-17	NA	61931426	61929530	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_61929705_61930632_61930744_61931274
transcript_62695.known	chr4	-	928	7	FSM	ENSMUSG00000078672.3	ENSMUST00000074018.4	928	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGCGTCTGTGTCCAAA	NA	False	NA	NA	False	AATAAA	-21	NA	61972395	61968470	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_61968724_61969508_61969555_61969718_61969821_61970137_61970249_61970872_61970947_61971716_61971851_61972187
transcript_62696.known	chr4	-	2017	4	FSM	ENSMUSG00000028389.13	ENSMUST00000222050.2	2017	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	8.48528137423857	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGAAAATACTGTATTTTT	NA	False	NA	NA	False	AATAAA	-25	NA	62126667	62109225	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_62110927_62122755_62122888_62123260_62123343_62126565
transcript_62697.known	chr4	-	1776	4	FSM	ENSMUSG00000028389.13	ENSMUST00000221329.2	1776	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	10.3708994574027	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAGGAAACCTGACAACTG	NA	False	NA	NA	False	NA	NA	NA	62126598	62109400	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_62110927_62122755_62122888_62123260_62123346_62126565
transcript_62699.known	chr4	-	3494	4	FSM	ENSMUSG00000028389.13	ENSMUST00000068822.4	3494	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	14.142135623731	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAAAGTGGTATTTTATTT	NA	False	NA	NA	False	ATTAAA	-19	NA	62126683	62107776	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_62110927_62122755_62122888_62123260_62123346_62126556
transcript_6270.known	chr10	-	1439	6	FSM	ENSMUSG00000019806.14	ENSMUST00000019942.6	1439	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	33.5654584357193	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCTTCAGAGAATGGCTG	NA	False	NA	NA	False	AATAAA	-17	NA	13744701	13528194	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_13528756_13529329_13529494_13566267_13566384_13677591_13677694_13704986_13705143_13744361
transcript_62704.known	chr4	+	1820	4	FSM	ENSMUSG00000066152.12	ENSMUST00000084530.9	1820	4	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_3	15.369522511198	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTTGTTGGTCCGTTTC	NA	False	NA	9	True	AATAAA	-20	NA	62204685	62216648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_62204812_62210868_62210936_62214123_62214314_62215211
transcript_62708.nnic	chr4	+	1649	3	NIC	ENSMUSG00000066152.12	novel	1820	4	NA	NA	-19	0	combination_of_known_splicesites	FALSE	canonical	2	7	junction_2	50	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTTGTTGGTCCGTTTC	NA	False	NA	9	True	AATAAA	-20	NA	62204666	62216648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_62204812_62210868_62210936_62215211
transcript_62720.known	chr4	-	1739	4	FSM	ENSMUSG00000066151.13	ENSMUST00000131977.2	1739	4	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	12.5698050899765	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATAAAATAAATTAT	6995	False	NA	NA	False	NA	NA	NA	62278706	62262373	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_62263815_62264293_62264379_62270669_62270783_62278606
transcript_62721.nic	chr4	-	1007	2	ISM	ENSMUSG00000066151.13	ENSMUST00000139308.2	3279	18	28776	0	28776	0	3prime_fragment	FALSE	canonical	3	121	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGTGTTCCTTTTTGGG	6795	False	NA	-1	True	NA	NA	NA	62221755	62218578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_62219228_62221397
transcript_62727.known	chr4	+	3718	5	FSM	ENSMUSG00000066150.13	ENSMUST00000084526.12	3718	5	0	0	0	0	multi-exon	FALSE	canonical	3	753	junction_3	40.1932830209228	1439	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGTCTGTCTACACACT	NA	False	NA	23	True	AATAAA	-23	NA	62278963	62310006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_62279081_62303728_62303916_62304327_62304401_62306103_62306273_62306834
transcript_6273.nnic	chr10	-	1317	5	NIC	ENSMUSG00000019806.14	novel	1554	6	NA	NA	-16	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	45.2016316077196	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGTCTGCACTGTTCA	NA	False	NA	0	True	AATAAA	-17	NA	13744589	13522797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_-_13523451_13529329_13529494_13566267_13566384_13704986_13705143_13744361
transcript_62732.known	chr4	-	654	3	FSM	ENSMUSG00000066149.12	ENSMUST00000107459.2	654	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	175	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGCTTAACTGATTTTTG	2681	False	NA	NA	False	NA	NA	NA	62326862	62312870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_62313259_62320960_62321153_62326788
transcript_62734.known	chr4	-	819	4	FSM	ENSMUSG00000066149.12	ENSMUST00000084525.12	819	4	0	0	0	0	multi-exon	FALSE	canonical	3	361	junction_3	9.67241208569794	3188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGACGTCCTTAAAGGT	2664	False	NA	NA	False	AATAAA	-18	NA	62326879	62312819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_62313259_62320960_62321153_62322692_62322790_62326788
transcript_6274.known	chr10	-	617	5	FSM	ENSMUSG00000019806.14	ENSMUST00000105534.10	617	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	50.8742321809381	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCCAAGTCTGAGAGGAGA	NA	False	NA	NA	False	AAAAAG	-21	NA	13744566	13523412	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_13523451_13566267_13566384_13677591_13677694_13704986_13705143_13744361
transcript_62740.known	chr4	+	5223	14	FSM	ENSMUSG00000066148.4	ENSMUST00000084524.4	5223	14	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_9	29.7191986640079	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGACAGCTTAGTCTAT	NA	False	NA	NA	False	AATAAA	-18	NA	62327033	62345227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_62327139_62327811_62327990_62329932_62330120_62332779_62332868_62333411_62333492_62333638_62333733_62334200_62334296_62334888_62334948_62336082_62336207_62337512_62337603_62340414_62340538_62340651_62340760_62340839_62340959_62341454
transcript_62746.nic	chr4	+	597	4	ISM	ENSMUSG00000066148.4	ENSMUST00000084524.4	5223	14	-72	12393	-72	-8734	5prime_fragment	FALSE	canonical	3	266	junction_2	23.3666428910958	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATGATGAAAAGTCTAAGAA	NA	False	NA	NA	False	AAAAAG	-10	NA	62326961	62332834	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_62327139_62327811_62327990_62329932_62330120_62332779
transcript_62752.known	chr4	-	2549	11	FSM	ENSMUSG00000028391.17	ENSMUST00000120095.8	2549	11	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_10	54.6457683631587	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAATAAATAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	62389124	62370868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_62372175_62374047_62374211_62375676_62375819_62377052_62377121_62378558_62378660_62378756_62378902_62380377_62380453_62381580_62381714_62382163_62382307_62387073_62387171_62388948
transcript_62754.known	chr4	-	1437	11	FSM	ENSMUSG00000028391.17	ENSMUST00000107452.8	1437	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_8	57	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATGATTTGAAAAATCAGG	NA	False	NA	96	True	NA	NA	NA	62389124	62371870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_62372175_62374047_62374211_62375676_62375819_62377052_62377121_62378558_62378660_62378756_62378902_62380377_62380453_62381580_62381711_62382163_62382307_62387073_62387171_62389055
transcript_62767.nic	chr4	-	1260	10	NIC	ENSMUSG00000028391.17	novel	1440	11	NA	NA	-74	-100	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	61.169063430689	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTGTGGCTTTGTGTT	NA	False	NA	-4	True	NA	NA	NA	62389207	62371970	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_62372175_62375676_62375819_62377052_62377121_62378558_62378660_62378756_62378902_62380377_62380453_62381580_62381714_62382163_62382307_62387073_62387171_62389055
transcript_62775.known	chr4	+	2167	6	FSM	ENSMUSG00000028392.16	ENSMUST00000107449.4	2167	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	4.63033476111609	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTCTTTGCTGGTAACTG	9556	False	NA	28	True	AATAAA	-39	NA	62398289	62415535	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_62398675_62400854_62400954_62404649_62404881_62406422_62406449_62412969_62413095_62414234
transcript_62776.known	chr4	-	1205	2	FSM	ENSMUSG00000038422.3	ENSMUST00000037820.3	1205	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCTGTGTTCCTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	62420513	62417244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_62418331_62420394
transcript_62780.known	chr4	-	1247	12	FSM	ENSMUSG00000028393.11	ENSMUST00000107444.8	1247	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_11	192.970301316246	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGTGCCCTCTTCCTGC	NA	False	NA	-1	True	AGTAAA	-18	NA	62438131	62427405	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_62427548_62428341_62428472_62428751_62428839_62428930_62429019_62429104_62429161_62429760_62429850_62429938_62430023_62430123_62430260_62431107_62431205_62431768_62431820_62432310_62432498_62438031
transcript_62781.known	chr4	-	1206	12	FSM	ENSMUSG00000028393.11	ENSMUST00000030090.4	1206	12	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_1	45.4718149012465	1305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGTGCCCTCTTCCTGC	NA	False	NA	-1	True	AGTAAA	-18	NA	62438155	62427405	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_62427548_62428341_62428472_62428751_62428839_62428930_62429019_62429104_62429161_62429760_62429850_62429938_62430023_62430123_62430260_62431107_62431205_62431768_62431820_62432310_62432498_62438096
transcript_62782.known	chr4	-	1769	11	FSM	ENSMUSG00000028393.11	ENSMUST00000137448.2	1769	11	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_1	41.725771412881	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGTGCCCTCTTCCTGC	NA	False	NA	-1	True	AGTAAA	-18	NA	62438118	62427405	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_62427548_62428341_62428472_62428751_62428839_62428930_62429019_62429104_62429850_62429938_62430023_62430123_62430260_62431107_62431205_62431768_62431820_62432310_62432498_62438096
transcript_62783.known	chr4	-	1805	4	FSM	ENSMUSG00000028394.10	ENSMUST00000030091.10	1805	4	0	0	0	0	multi-exon	FALSE	canonical	3	309	junction_3	9.56846672960488	2123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTCATACAATGTGCTTT	NA	False	NA	1	True	AATAAA	-22	NA	62443305	62440885	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_62442348_62442554_62442674_62442986_62443073_62443167
transcript_62784.known	chr4	-	1945	4	FSM	ENSMUSG00000028394.10	ENSMUST00000128100.2	1945	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	150.086641644085	694	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTCATACAATGTGCTTT	NA	False	NA	1	True	AATAAA	-22	NA	62443305	62440885	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_62442348_62442554_62442674_62442846_62443073_62443167
transcript_62786.known	chr4	+	2072	18	FSM	ENSMUSG00000059810.19	ENSMUST00000098031.10	2072	18	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_17	16.975863182644	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCAAAACAGGAGGCTAAGT	NA	False	NA	NA	False	NA	NA	NA	62501837	62575676	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_62501951_62521157_62521209_62523724_62523784_62524743_62524839_62525845_62525915_62533537_62533599_62534710_62534802_62535311_62535368_62542081_62542164_62543333_62543440_62543978_62544331_62544728_62544769_62549360_62549558_62552682_62552767_62558953_62559066_62564920_62564965_62570950_62571074_62575339
transcript_6279.nnic	chr10	-	1069	4	NNC	ENSMUSG00000019806.14	novel	1554	6	NA	NA	151905	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	43.5660418215839	91	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGTCTGCACTGTTCA	NA	False	NA	0	True	AATAAA	-17	NA	13568125	13522797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_13523451_13529329_13529494_13566267_13566384_13567989
transcript_62791.nnic	chr4	+	806	6	NNC	ENSMUSG00000059810.19	novel	2072	18	NA	NA	-92	-14986	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	35.689774445911	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAATCTTCTTTTCATCAG	NA	False	NA	NA	False	NA	NA	NA	62501745	62527167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_62501951_62521157_62521209_62523724_62523784_62524743_62524839_62525845_62525915_62526840
transcript_62792.nnic	chr4	+	659	5	NNC	ENSMUSG00000059810.19	novel	2072	18	NA	NA	-175	-16505	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_4	32.2286751201473	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCTGGCCTCTCTTTTGT	NA	False	NA	NA	False	NA	NA	NA	62501662	62525648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_62501951_62521157_62521209_62523724_62523784_62524743_62524839_62525482
transcript_62793.known	chr4	+	1719	5	FSM	ENSMUSG00000059810.19	ENSMUST00000125369.8	1719	5	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	24.4783067224839	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCTGTGTATTCCTGGT	2424	False	NA	1	True	AATAAA	-21	NA	62617702	62621255	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_62618132_62618234_62618337_62618590_62618653_62619270_62619438_62620296
transcript_62794.nic	chr4	+	1299	4	ISM	ENSMUSG00000059810.19	ENSMUST00000098031.10	2072	18	-175	50032	-175	-16509	5prime_fragment	FALSE	canonical	3	86	junction_2	7.25718035235908	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTGTTCTGGCCTCTCTT	NA	False	NA	NA	False	NA	NA	NA	62501662	62525644	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_62501951_62521157_62521209_62523724_62523784_62524743
transcript_62797.nnic	chr4	-	982	7	NNC	ENSMUSG00000028356.5	novel	1268	10	NA	NA	4259	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	3.18416219575713	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTGTGTTGGCGTCTCA	NA	False	NA	NA	False	AATAAA	-22	NA	63068151	63061511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_63061638_63061903_63062078_63062387_63062556_63063501_63063584_63066938_63066986_63067655_63067758_63067868
transcript_62798.nnic	chr4	-	801	7	NNC	ENSMUSG00000028356.5	novel	1268	10	NA	NA	4193	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	3.45205252953466	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTGTGTTGGCGTCTCA	NA	False	NA	NA	False	AATAAA	-22	NA	63068217	63061511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_63061638_63061903_63062078_63062387_63062556_63063501_63063584_63066938_63066986_63067655_63067758_63068115
transcript_62800.known	chr4	-	1268	10	FSM	ENSMUSG00000028356.5	ENSMUST00000030041.5	1268	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	3.47832796499967	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTGTGTTGGCGTCTCA	NA	False	NA	NA	False	AATAAA	-22	NA	63072410	63061511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_63061638_63061903_63062078_63062387_63062556_63063501_63063584_63066938_63066986_63067655_63067758_63068564_63068682_63069690_63069768_63070820_63070964_63072178
transcript_62803.known	chr4	+	1135	3	FSM	ENSMUSG00000039105.7	ENSMUST00000035301.7	1135	3	0	0	0	0	multi-exon	FALSE	canonical	3	4249	junction_2	22.5	20857	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGAGCAGAATTTCATCT	NA	False	NA	NA	False	AATACA	-20	NA	63463008	63468987	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_63463237_63466821_63466923_63468181
transcript_62818.known	chr4	+	3765	10	FSM	ENSMUSG00000045917.18	ENSMUST00000077709.11	3765	10	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	11.4901997962622	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGTAAGGGACCATGTT	NA	False	NA	18	True	AATAAA	-18	NA	63477017	63504594	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_63477195_63479148_63479233_63480676_63480869_63483893_63484004_63486697_63486806_63488180_63488331_63496037_63496149_63498169_63498251_63498529_63498710_63502022
transcript_62821.nnic	chr4	+	1584	10	NNC	ENSMUSG00000045917.18	novel	3765	10	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	24.114439094441	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGTAAGGGACCATGTT	NA	False	NA	18	True	AATAAA	-18	NA	63476995	63504594	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_63477195_63479148_63479233_63480676_63480869_63483893_63484004_63486697_63486806_63488180_63488331_63496037_63496149_63498169_63498251_63498529_63498710_63504225
transcript_62826.known	chr4	-	555	1	FSM	ENSMUSG00000084345.4	ENSMUST00000120241.2	555	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	252	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTCAGCATAAAATAAAGGC	NA	False	NA	NA	False	AAGAAA	-34	NA	63814336	63813781	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_63813800_63814300
transcript_62829.known	chr4	+	3194	2	FSM	ENSMUSG00000051675.14	ENSMUST00000050850.14	3194	2	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGGTCATGTCTTAATT	NA	False	NA	20	True	AATAAA	-21	NA	65523222	65534475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_65523307_65531365
transcript_6283.known	chr10	+	468	1	FSM	ENSMUSG00000071532.7	ENSMUST00000096020.7	468	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19591	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTGAGTCCAGATGGCT	7726	False	NA	NA	False	NA	NA	NA	14398821	14399289	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_14398800_14399300
transcript_62830.known	chr4	+	3191	2	FSM	ENSMUSG00000051675.14	ENSMUST00000107366.2	3191	2	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGGTCATGTCTTAATT	NA	False	NA	20	True	AATAAA	-21	NA	65523222	65534475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_65523307_65531368
transcript_62831.known	chr4	+	859	1	FSM	ENSMUSG00000083087.2	ENSMUST00000117071.2	859	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	252	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTTTTTATATGAGAAAAA	8138	False	NA	NA	False	NA	NA	NA	67849117	67849976	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_67849100_67850000
transcript_62840.nnic	chr4	-	897	2	Genic_Genomic	ENSMUSG00000046341.6	novel	450	1	NA	NA	-93	456	multi-exon	FALSE	canonical	2	29	junction_1	0	358	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATAAGGGAAGGATGTGAT	NA	False	NA	NA	False	AATAAA	-43	NA	69844409	69843410	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr4_-_69844194_69844295
transcript_62844.known	chr4	-	11847	37	FSM	ENSMUSG00000039298.17	ENSMUST00000144099.8	11847	37	0	0	0	0	multi-exon	TRUE	canonical	3	146	junction_29	30.4796025702355	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTCTATTATATTCATTT	NA	False	NA	NA	False	ATTAAA	-21	NA	70328680	70135092	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_70141352_70141766_70141814_70146834_70146962_70153583_70153728_70156416_70156683_70157521_70157600_70160707_70160833_70161632_70161823_70163617_70163735_70168589_70168710_70172872_70173052_70175571_70175621_70182727_70182961_70184711_70185286_70190880_70191013_70194710_70194946_70199326_70199760_70208081_70208267_70210068_70210165_70217056_70217186_70218802_70218913_70220320_70220452_70225431_70225527_70233560_70233702_70235663_70235835_70255577_70255797_70267380_70267483_70270905_70271026_70271846_70271889_70272949_70273113_70279047_70279203_70282243_70282368_70295029_70295107_70298427_70298539_70319481_70319550_70321710_70321779_70328448
transcript_62846.known	chr4	-	459	1	FSM	ENSMUSG00000083914.4	ENSMUST00000120838.2	459	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	219	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTGGGCCTTTGCTGTT	NA	False	NA	NA	False	AAGAAA	-4	NA	71289433	71288974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_71289000_71289400
transcript_62847.known	chr4	+	1322	6	FSM	ENSMUSG00000094116.2	ENSMUST00000178319.2	1322	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.49666295470958	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTCTTTGCTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-12	NA	73541220	73545264	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_73541344_73542037_73542126_73542595_73542905_73543182_73543261_73544237_73544544_73544846
transcript_62849.known	chr4	+	1322	6	FSM	ENSMUSG00000096700.2	ENSMUST00000180092.2	1322	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.49666295470958	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTCTTTGCTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-12	NA	73556357	73560398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_73556481_73557174_73557263_73557729_73558039_73558316_73558395_73559371_73559678_73559980
transcript_6285.known	chr10	-	1219	7	FSM	ENSMUSG00000019868.17	ENSMUST00000020018.12	1219	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	268.946504387438	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAGATTACCAGAATAG	NA	False	NA	-32	True	ATTAAA	-6	NA	14581244	14531098	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_14531590_14536809_14536897_14543675_14543853_14551677_14551787_14559807_14559884_14560624_14560753_14581093
transcript_62850.known	chr4	+	1322	6	FSM	ENSMUSG00000095048.8	ENSMUST00000171348.9	1322	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.49666295470958	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTCTTTGCTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-12	NA	73586590	73590633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_73586714_73587407_73587496_73587962_73588272_73588549_73588628_73589606_73589913_73590215
transcript_62851.known	chr4	+	1322	6	FSM	ENSMUSG00000095341.2	ENSMUST00000084475.4	1322	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.49666295470958	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTCTTTGCTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-12	NA	73601752	73605795	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_73601876_73602569_73602658_73603124_73603434_73603711_73603790_73604768_73605075_73605377
transcript_62852.known	chr4	-	1325	6	FSM	ENSMUSG00000096530.8	ENSMUST00000107327.8	1325	6	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	1.67332005306815	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCTTTTCTTTTTTTTCA	NA	False	NA	NA	False	AATAAA	-13	NA	73794503	73790455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_73790875_73791179_73791486_73792461_73792540_73792817_73793127_73793596_73793685_73794378
transcript_62853.known	chr4	-	1324	6	FSM	ENSMUSG00000096333.8	ENSMUST00000107319.8	1324	6	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	1.67332005306815	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTCTTTTCTTTTTTTTC	NA	False	NA	NA	False	AATAAA	-12	NA	73824190	73820143	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_73820562_73820866_73821173_73822148_73822227_73822504_73822814_73823283_73823372_73824065
transcript_62857.known	chr4	+	4196	22	FSM	ENSMUSG00000028397.14	ENSMUST00000030102.12	4196	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	55.9303502727513	224	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCGTCTTCTGTCTGTCA	NA	False	NA	14	True	ATTAAA	-15	NA	74170172	74324097	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_74170324_74181045_74181207_74189430_74189607_74199133_74199249_74216677_74216872_74225201_74225252_74229883_74229988_74233748_74233887_74248891_74249086_74251869_74252106_74252785_74253106_74255118_74255228_74261606_74261789_74263679_74263894_74266636_74266714_74275578_74275635_74277656_74277766_74291802_74291989_74295866_74296038_74309613_74309734_74317583_74317677_74323057
transcript_62865.known	chr4	-	572	2	FSM	ENSMUSG00000085482.2	ENSMUST00000126646.2	572	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATAAGTACTCTTATTAT	NA	False	NA	NA	False	ATTAAA	-18	NA	74169951	74168560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_74169057_74169875
transcript_62866.known	chr4	-	741	2	FSM	ENSMUSG00000028398.9	ENSMUST00000030103.9	741	2	0	0	0	0	multi-exon	FALSE	canonical	3	402	junction_1	0	3349	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTAGTTCTTTTAATTTT	NA	False	NA	NA	False	AATAAA	-16	NA	75196542	75195590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_75196007_75196217
transcript_62867.known	chr4	+	749	1	FSM	ENSMUSG00000083496.2	ENSMUST00000121853.2	749	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1378	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCTTTAAGAGCAACAAATA	NA	False	NA	NA	False	NA	NA	NA	79245944	79246693	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_79245900_79246700
transcript_62868.known	chr4	+	3066	2	FSM	ENSMUSG00000048706.4	ENSMUST00000055922.4	3066	2	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTCTGGTGTTATATTTT	NA	False	NA	NA	False	ATTAAA	-2	NA	80828882	80873865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_80829883_80871799
transcript_62870.known	chr4	-	3835	2	FSM	ENSMUSG00000008575.18	ENSMUST00000135024.2	3835	2	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAGAAAAAAAATATTTATA	NA	False	NA	NA	False	AAGAAA	-28	NA	82424016	82414220	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_82417007_82422967
transcript_62872.known	chr4	-	8763	9	FSM	ENSMUSG00000028403.16	ENSMUST00000030110.15	8763	9	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	13.8293166859393	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAATGTTTTTATCCTCTTA	NA	False	NA	-10	True	AATAAA	-18	NA	82777910	82716974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_82724699_82725249_82725294_82738566_82738684_82753682_82753822_82756512_82756625_82762340_82762440_82765779_82765977_82772205_82772353_82777726
transcript_62875.known	chr4	-	3203	8	FSM	ENSMUSG00000028403.16	ENSMUST00000173741.8	3203	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	30.5420419509013	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTCTTGGTAAACTGCCT	NA	False	NA	NA	False	TATAAA	-34	NA	82777798	82722283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_82724699_82725249_82725294_82738566_82738684_82756512_82756625_82762340_82762440_82765779_82765977_82772205_82772353_82777726
transcript_62878.known	chr4	-	8831	20	FSM	ENSMUSG00000038172.15	ENSMUST00000102823.10	8831	20	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_3	31.1407314036548	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACAGTCTTCTATTTGATG	NA	False	NA	-12	True	AATAAA	-16	NA	83242492	83138536	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_83145462_83148644_83148762_83150947_83151066_83155478_83155588_83158304_83158432_83159882_83159975_83160375_83160538_83162140_83162201_83162284_83162353_83163266_83163376_83164509_83164576_83165849_83165956_83171222_83171288_83174281_83174350_83179118_83179196_83180062_83180195_83181930_83182039_83189353_83189456_83216164_83216200_83242307
transcript_62888.known	chr4	-	1804	16	FSM	ENSMUSG00000038172.15	ENSMUST00000048274.11	1804	16	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_7	23.0820757780192	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACAAATTCAATTTTCCAT	NA	False	NA	NA	False	AATAAA	-22	NA	83242476	83158046	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_83158432_83159882_83159975_83160375_83160538_83162140_83162201_83162284_83162353_83163266_83163376_83164509_83164576_83165849_83165956_83171222_83171288_83174281_83174350_83179118_83179196_83180062_83180195_83181930_83182039_83189353_83189456_83216164_83216200_83242307
transcript_62893.known	chr4	-	842	7	FSM	ENSMUSG00000038172.15	ENSMUST00000030205.14	842	7	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	86.0905531015647	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATGCTCTATTTTTTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	83242426	83177434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_83177704_83179118_83179196_83180062_83180195_83181930_83182039_83189353_83189456_83216164_83216200_83242307
transcript_62896.nic	chr4	-	620	5	ISM	ENSMUSG00000038172.15	ENSMUST00000030205.14	842	7	-124	2628	-58	-2497	5prime_fragment	FALSE	canonical	3	226	junction_4	10.4163333279998	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATGACTGAGTAATTTATA	NA	False	NA	NA	False	NA	NA	NA	83242550	83180062	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_83180195_83181930_83182039_83189353_83189456_83216164_83216200_83242307
transcript_62898.nnic	chr4	-	498	4	NNC	ENSMUSG00000038172.15	novel	8831	20	NA	NA	-58	-11214	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	109.612448603655	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGTTCCTATTTTTCT	NA	False	NA	NA	False	AATAGA	-14	NA	83242550	83188779	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_83188898_83189353_83189456_83216164_83216200_83242307
transcript_6290.known	chr10	-	1974	8	FSM	ENSMUSG00000019868.17	ENSMUST00000154132.8	1974	8	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_6	66.3663302881692	1288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATCTGGAAATCCAGTACT	NA	False	NA	NA	False	AATAAA	-22	NA	14581304	14530498	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_14531590_14536809_14536897_14543675_14543853_14551677_14551787_14559807_14559884_14560624_14560753_14563357_14563453_14581093
transcript_62906.known	chr4	+	1405	9	FSM	ENSMUSG00000028483.14	ENSMUST00000030206.10	1405	9	0	0	0	0	multi-exon	FALSE	canonical	3	309	junction_6	50.2767341819255	1145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGATTCTTTTCTCCAA	NA	False	NA	18	True	TATAAA	-18	NA	83335960	83371577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_83336292_83336942_83337021_83346018_83346104_83353427_83353533_83354560_83354711_83360123_83360207_83368307_83368473_83369441_83369550_83371277
transcript_6291.nnic	chr10	+	724	3	NNC	ENSMUSG00000112227.2	novel	628	3	NA	NA	-140	-55	at_least_one_novel_splicesite	TRUE	canonical	3	7	junction_1	1	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGCTGACTTTTAATAAAA	NA	False	NA	NA	False	AATAAA	-23	NA	15667384	15682758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_15667792_15677163_15677341_15682618
transcript_62910.known	chr4	+	1993	8	FSM	ENSMUSG00000028483.14	ENSMUST00000137512.8	1993	8	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_2	136.304730628972	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATCTGTTTAAAAGATT	NA	False	NA	NA	False	AATAAA	-13	NA	83335980	83372270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_83336292_83336942_83337021_83353427_83353533_83354560_83354711_83360123_83360207_83368307_83368473_83369441_83369550_83371277
transcript_62912.known	chr4	+	942	6	FSM	ENSMUSG00000028483.14	ENSMUST00000071544.11	942	6	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_3	22.8875512014719	506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTCTAGTCCCCTTTC	NA	False	NA	NA	False	ATTAAA	-17	NA	83335967	83360323	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_83336292_83336942_83337021_83346018_83346104_83353427_83353533_83354560_83354711_83360123
transcript_62916.known	chr4	-	463	3	FSM	ENSMUSG00000028484.17	ENSMUST00000126706.8	463	3	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	872	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGATTTTTAGGTATTTTT	6800	False	NA	94	True	AATAAA	-19	NA	83383201	83380107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_83380412_83381831_83381951_83383161
transcript_62917.known	chr4	-	354	1	FSM	ENSMUSG00000066116.4	ENSMUST00000084445.4	354	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4781	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGCACATTTTTTAAGTA	NA	False	NA	NA	False	NA	NA	NA	83423775	83423421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_83423400_83423800
transcript_6292.known	chr10	+	628	3	FSM	ENSMUSG00000112227.2	ENSMUST00000218833.2	628	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	3	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGACTAAAGATCAAGTATT	NA	False	NA	NA	False	NA	NA	NA	15667524	15682813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_15667781_15677163_15677341_15682618
transcript_62920.nic	chr4	+	1360	5	ISM	ENSMUSG00000052407.18	ENSMUST00000125077.9	4231	25	-84	309207	10	0	5prime_fragment	FALSE	canonical	2	7	junction_4	4.30116263352131	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGGTTTTTTTTTTTTT	8699	False	NA	NA	False	AATAAA	-13	NA	83443791	83473615	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_83444008_83454026_83454175_83465070_83465207_83467839_83468015_83472930
transcript_62921.nic	chr4	+	853	3	ISM	ENSMUSG00000052407.18	ENSMUST00000126429.8	1388	6	-59	8056	10	-8056	5prime_fragment	FALSE	canonical	3	16	junction_2	1	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATTTGTATGCTGTCT	8699	False	NA	NA	False	ATTAAA	-20	NA	83443791	83465559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_83444008_83454026_83454175_83465070
transcript_62923.known	chr4	+	2822	9	FSM	ENSMUSG00000028488.16	ENSMUST00000030212.15	2822	9	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_4	17.2191753577226	167	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGAGGCTTCTGCTTCTTCC	NA	False	NA	28	True	AATAAA	-18	NA	85123677	85307617	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_85123859_85265360_85265430_85273563_85273637_85294577_85294722_85295630_85295765_85297488_85297648_85299641_85299746_85304026_85304158_85305790
transcript_62925.known	chr4	+	977	5	FSM	ENSMUSG00000066113.17	ENSMUST00000120678.2	977	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.08972473588517	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGAAAAAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	85972211	86117932	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_85972358_86005945_86006074_86029053_86029100_86074871_86075109_86117512
transcript_62927.known	chr4	-	1716	4	FSM	ENSMUSG00000028492.14	ENSMUST00000151481.8	1716	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.24721912892465	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAATAAAGGAAAATGACACA	NA	False	NA	NA	False	NA	NA	NA	86457354	86362877	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_86364055_86397109_86397316_86405976_86406157_86457201
transcript_62931.nnic	chr4	-	1381	3	NIC	ENSMUSG00000028492.14	novel	1716	4	NA	NA	-30	-159	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAACATTCAAAACCTGC	NA	False	NA	NA	False	NA	NA	NA	86457384	86363036	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_86364055_86405976_86406157_86457201
transcript_62932.known	chr4	+	1618	1	FSM	ENSMUSG00000070934.7	ENSMUST00000091064.8	1618	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	749	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGTTTGAAATAATTTGC	NA	False	NA	19	True	AATAAA	-19	NA	86493904	86495522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_86493900_86495500
transcript_62934.known	chr4	-	6158	17	FSM	ENSMUSG00000038047.19	ENSMUST00000070607.9	6158	17	0	0	0	0	multi-exon	TRUE	canonical	3	127	junction_2	24.1993672437938	118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGAATTCCCTGTATT	NA	False	NA	-7	True	AATAAA	-16	NA	86530292	86497091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_86500256_86501117_86502111_86503564_86503701_86503999_86504183_86504549_86504617_86507221_86507304_86511828_86511932_86512977_86513105_86513599_86513794_86517495_86517667_86518987_86519037_86519459_86519526_86521055_86521201_86522393_86522527_86523873_86523953_86526131_86526228_86529922
transcript_62942.nnic	chr4	-	1119	4	NNC	ENSMUSG00000081169.2	novel	726	3	NA	NA	-2014	219	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_3	2.16024689946929	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCTGCTCCTGTGTGGTC	6819	False	NA	NA	False	AATAAA	-15	NA	86551502	86545092	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_86545725_86547548_86547829_86549748_86549804_86551350
transcript_62952.known	chr4	-	1888	8	FSM	ENSMUSG00000028494.13	ENSMUST00000000466.13	1888	8	0	0	0	0	multi-exon	FALSE	canonical	3	453	junction_2	61.6944412539141	1370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTTTATGTTGTTACATGT	NA	False	NA	NA	False	AAGAAA	-42	NA	86588297	86574801	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_86575642_86576817_86576953_86578324_86578507_86580170_86580451_86582665_86582749_86586603_86586800_86586886_86586943_86588181
transcript_6296.known	chr10	+	1979	2	FSM	ENSMUSG00000039910.11	ENSMUST00000038107.9	1979	2	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_1	0	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATTTGGGGGGGGTTGTC	NA	False	NA	NA	False	AATAAA	-34	NA	17598965	17601422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_17599208_17599685
transcript_62961.known	chr4	-	683	5	FSM	ENSMUSG00000028494.13	ENSMUST00000140382.3	683	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	244.16439134321	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAATGGTGCCTTTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	86588005	86580170	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_86580451_86582665_86582749_86586603_86586800_86586886_86586943_86587937
transcript_62964.known	chr4	-	996	3	FSM	ENSMUSG00000028494.13	ENSMUST00000134094.2	996	3	0	0	0	0	multi-exon	FALSE	canonical	3	582	junction_1	18.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGCTCAGAGAATACCAGAT	NA	False	NA	NA	False	NA	NA	NA	86588223	86585901	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_86586800_86586886_86586943_86588181
transcript_62970.known	chr4	-	878	5	FSM	ENSMUSG00000028495.15	ENSMUST00000102814.5	878	5	0	0	0	0	multi-exon	FALSE	canonical	3	14010	junction_1	3685.72343645043	75455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCTTTCATTAATAGTGT	NA	False	NA	NA	False	AATAAA	-21	NA	86775649	86772896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_86773193_86774103_86774251_86774382_86774594_86774964_86775097_86775557
transcript_62971.known	chr4	-	639	4	FSM	ENSMUSG00000028495.15	ENSMUST00000123229.8	639	4	0	0	0	0	multi-exon	FALSE	canonical	3	18159	junction_1	2678.8979077225	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGAGATTACGAAGGCATT	NA	False	NA	NA	False	NA	NA	NA	86775591	86773988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_86774251_86774382_86774594_86774964_86775097_86775557
transcript_62973.known	chr4	+	4216	6	FSM	ENSMUSG00000038007.15	ENSMUST00000045224.14	4216	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	3.00665927567458	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGAAATTATTTCTTTC	NA	False	NA	26	True	AATAAA	-17	NA	86792632	86839112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_86792834_86804394_86804510_86805260_86805403_86818718_86818857_86829852_86829991_86835630
transcript_62975.known	chr4	+	1176	6	FSM	ENSMUSG00000038007.15	ENSMUST00000128712.2	1176	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	3.00665927567458	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAGAAAATAAAGGCTCCC	NA	False	NA	NA	False	NA	NA	NA	86792650	86850728	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_86792834_86804394_86804510_86805260_86805403_86818718_86818857_86829852_86829991_86850268
transcript_6298.known	chr10	+	1786	3	FSM	ENSMUSG00000039891.7	ENSMUST00000175676.2	1786	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACTCCATGCCTGTTGG	NA	False	NA	NA	False	AGTAAA	-12	NA	17671973	17683656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_17672170_17674835_17675282_17682512
transcript_62982.known	chr4	+	380	3	FSM	ENSMUSG00000082443.2	ENSMUST00000118382.2	380	3	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTATTGGAAGCTTCCAGAA	NA	False	NA	NA	False	NA	NA	NA	87499025	87499797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_87499155_87499353_87499543_87499735
transcript_62985.known	chr4	-	6069	11	FSM	ENSMUSG00000028496.18	ENSMUST00000078090.12	6069	11	0	0	0	0	multi-exon	TRUE	canonical	2	10	junction_9	3.7	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGACTCCTTTATTTTTT	NA	False	NA	NA	False	NA	NA	NA	87951601	87688161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_87692384_87700523_87700596_87701885_87701958_87707523_87707624_87710089_87710220_87712172_87712249_87758918_87759627_87792074_87792219_87798302_87798386_87949760_87949942_87951320
transcript_62988.nic	chr4	+	1772	11	ISM	ENSMUSG00000038368.17	ENSMUST00000097992.10	5791	44	-34	213785	-33	14177	5prime_fragment	FALSE	canonical	3	105	junction_5	16.9292646030476	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGAATTCAGTATATTTT	NA	False	NA	NA	False	ATTAAA	-19	NA	88012832	88115458	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_88012913_88039506_88039596_88042824_88042900_88047134_88047290_88072873_88072979_88088143_88088246_88092849_88093055_88096318_88096526_88100820_88100909_88104116_88104320_88114995
transcript_6299.known	chr10	-	5098	4	FSM	ENSMUSG00000039879.10	ENSMUST00000037879.8	5098	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_3	19.3045763140937	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCATTTTAGATTTTGT	NA	False	NA	-11	True	AATAAA	-22	NA	17823815	17774782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_17778126_17783781_17783937_17790739_17791781_17823256
transcript_62990.nic	chr4	+	1190	8	ISM	ENSMUSG00000038368.17	ENSMUST00000161058.8	1430	9	-49	4584	-33	-4584	5prime_fragment	FALSE	canonical	3	105	junction_5	16.634117877153	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAAAGTCTACCTTGTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	88012832	88096697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_88012913_88039506_88039596_88042824_88042900_88047134_88047290_88072873_88072979_88088143_88088246_88092849_88093055_88096318
transcript_62991.nic	chr4	+	762	4	ISM	ENSMUSG00000038368.17	ENSMUST00000161058.8	1430	9	-49	53629	-33	7603	5prime_fragment	FALSE	canonical	3	135	junction_1	10.2306728354819	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAACCAAAAA	NA	False	NA	NA	False	NA	NA	NA	88012832	88047652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_88012913_88039506_88039596_88042824_88042900_88047134
transcript_62992.known	chr4	-	2089	7	FSM	ENSMUSG00000028497.13	ENSMUST00000030221.3	2089	7	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_1	2.26691175145591	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GTAAAAAAAAAAGTGAAACA	NA	False	NA	NA	False	NA	NA	NA	88357163	88331166	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_88332584_88337935_88338062_88341227_88341335_88344972_88345086_88353175_88353304_88355696_88355801_88357069
transcript_62996.known	chr4	-	4174	1	FSM	ENSMUSG00000070923.5	ENSMUST00000094993.3	4174	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTTGTATTGCTTTTTT	NA	False	NA	-1	True	NA	NA	NA	88640702	88636528	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_88636500_88640700
transcript_63.known	ERCC-00134	+	257	1	FSM	ERCC-00134A	DQ516739	257	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	AATAGA	-40	NA	0	257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00134_+_0_300
transcript_63004.known	chr4	-	852	3	FSM	ENSMUSG00000044303.7	ENSMUST00000060501.5	852	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.5	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATTTTTAGCATAGAAAT	NA	False	NA	-3	True	AATAAA	-26	NA	89200429	89192707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_89193012_89194881_89195223_89200222
transcript_63005.known	chr4	-	895	3	FSM	ENSMUSG00000044303.7	ENSMUST00000107131.2	895	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	1	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCGGCCGCGAAGGGAATAA	NA	False	NA	-73	True	NA	NA	NA	89212890	89192777	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_89193012_89194881_89195223_89212570
transcript_63008.known	chr4	-	1390	2	FSM	ENSMUSG00000073802.6	ENSMUST00000097981.6	1390	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAAGTTCAACTTGGTTT	NA	False	NA	NA	False	AAGAAA	-18	NA	89229276	89224535	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_89225552_89228902
transcript_63009.known	chr4	-	3671	6	FSM	ENSMUSG00000008489.19	ENSMUST00000107110.8	3671	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	41.6461282714252	177	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTGTATCTTTAAATACAT	NA	False	NA	2	True	AATAAA	-20	NA	91260271	91138999	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_91141808_91148997_91149224_91152228_91152383_91169450_91169555_91196847_91197092_91260136
transcript_63014.known	chr4	-	1009	1	FSM	ENSMUSG00000100863.2	ENSMUST00000122162.2	1009	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	175	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACATAAGCATGGTGTCC	NA	False	NA	NA	False	NA	NA	NA	91694792	91693783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_91693800_91694800
transcript_63016.nnic	chr4	-	1726	6	NNC	ENSMUSG00000087128.8	novel	925	5	NA	NA	-75	658	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	6.01331855134916	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCAAGCGTTTTTGTACA	NA	False	NA	NA	False	NA	NA	NA	94365492	94348509	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_94349585_94350122_94350199_94352666_94352793_94353653_94353778_94356020_94356103_94365249
transcript_63018.nnic	chr4	-	1823	6	NNC	ENSMUSG00000087128.8	novel	925	5	NA	NA	-75	654	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_5	4.63033476111609	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGTGCAAGCGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	94365492	94348513	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_94349593_94350122_94350292_94352666_94352793_94353653_94353778_94356020_94356103_94365249
transcript_63020.nnic	chr4	-	1120	6	NNC	ENSMUSG00000087128.8	novel	925	5	NA	NA	-24	2	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_5	4.63033476111609	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTTCTGGGCTGGAGG	NA	False	NA	NA	False	CATAAA	-19	NA	94365441	94349165	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_94349593_94350122_94350292_94352666_94352793_94353653_94353778_94356020_94356103_94365249
transcript_63021.nnic	chr4	-	1053	6	NNC	ENSMUSG00000087128.8	novel	925	5	NA	NA	-75	-15	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	6.01331855134916	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAGACATGAAAAGTATTT	NA	False	NA	NA	False	CATAAA	-2	NA	94365492	94349182	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_94349585_94350122_94350199_94352666_94352793_94353653_94353778_94356020_94356103_94365249
transcript_63023.known	chr4	-	925	5	FSM	ENSMUSG00000087128.8	ENSMUST00000133884.8	925	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	7.28010988928052	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATGTTCTGGGCTGGA	NA	False	NA	NA	False	CATAAA	-17	NA	94365417	94349167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_94349593_94352666_94352793_94353653_94353778_94356020_94356103_94365249
transcript_63025.known	chr4	-	523	5	FSM	ENSMUSG00000087128.8	ENSMUST00000127678.2	523	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	5.1720402163943	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGAAGGACCCTAATTGT	NA	False	NA	NA	False	NA	NA	NA	94365404	94350255	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_94350292_94352666_94352793_94353653_94353778_94356020_94356103_94365249
transcript_63027.nnic	chr4	-	1982	6	NNC	ENSMUSG00000028578.9	novel	2107	6	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_5	95.7091427189691	31	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACAGATATCTTTTGCTTC	NA	False	NA	NA	False	AATAAA	-22	NA	94445042	94388317	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_94389654_94409298_94409373_94437355_94437432_94438658_94438744_94439501_94439703_94444832
transcript_63031.known	chr4	-	2784	14	FSM	ENSMUSG00000028577.14	ENSMUST00000107107.9	2784	14	0	0	0	0	multi-exon	TRUE	canonical	3	626	junction_12	53.7532164993284	248	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGTGAGGTTTTCCTGTG	NA	False	NA	-12	True	AATAAA	-15	NA	94491481	94457403	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_94458147_94459923_94460089_94462218_94462321_94463402_94463472_94466623_94466693_94470717_94470938_94471650_94471809_94472069_94472240_94474531_94474668_94474989_94475158_94475517_94475639_94475723_94475825_94478117_94478312_94491113
transcript_63037.known	chr4	+	2139	20	FSM	ENSMUSG00000028576.13	ENSMUST00000030311.11	2139	20	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_8	18.5526129152575	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTCCTTTTCCTGTGTT	NA	False	NA	10	True	AATAAA	-11	NA	94502727	94581466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_94502889_94506203_94506339_94510090_94510227_94512967_94513017_94515213_94515313_94515488_94515550_94520913_94520974_94524010_94524073_94541163_94541303_94543065_94543129_94546743_94546888_94549184_94549226_94550823_94550904_94566501_94566556_94567416_94567515_94568170_94568298_94573858_94574023_94575047_94575174_94579956_94580018_94581187
transcript_63044.known	chr4	+	1713	14	FSM	ENSMUSG00000028576.13	ENSMUST00000107104.3	1713	14	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_13	52.3868179814813	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTCTACATCTGCATC	NA	False	NA	NA	False	AATAAA	-14	NA	94502727	94552935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_94502889_94506203_94506339_94510090_94510227_94512967_94513017_94515213_94515313_94515488_94515550_94520913_94520974_94524010_94524073_94541163_94541303_94543065_94543129_94546743_94546888_94549184_94549226_94550823_94550904_94552452
transcript_6305.known	chr10	-	425	3	FSM	ENSMUSG00000078453.4	ENSMUST00000218994.2	425	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	71	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGAGAAGTCCTGTTTTT	NA	False	NA	NA	False	GGGGCT	-1	NA	17898626	17887271	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_17887565_17894586_17894654_17898561
transcript_63058.known	chr4	-	7420	20	FSM	ENSMUSG00000062627.10	ENSMUST00000075872.4	7420	20	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_15	17.5783170388094	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTATTAGCAATGTTATT	NA	False	NA	0	True	AATAAA	-25	NA	94867337	94830276	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_94835361_94836338_94836397_94836565_94836672_94839162_94839296_94840410_94840600_94841099_94841175_94841734_94841786_94842108_94842164_94845286_94845376_94847149_94847228_94848564_94848669_94849939_94850071_94853365_94854109_94856106_94856206_94857216_94857296_94858748_94858773_94858860_94858939_94861154_94861226_94863453_94863530_94867240
transcript_6306.known	chr10	-	275	3	FSM	ENSMUSG00000078453.4	ENSMUST00000220433.2	275	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	67.5	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTACATACGCAGGGGAAC	NA	False	NA	NA	False	NA	NA	NA	17898838	17887452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_17887565_17894586_17894654_17898742
transcript_63061.known	chr4	-	730	8	FSM	ENSMUSG00000062627.10	ENSMUST00000134730.8	730	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	26.4737066323766	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATCAAGGAGAATTATGCC	NA	False	NA	NA	False	AGTAAA	-12	NA	94867279	94853839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_94854109_94856106_94856206_94857216_94857291_94858748_94858773_94858860_94858939_94861154_94861226_94863453_94863530_94867240
transcript_63063.nnic	chr4	-	859	4	NNC	ENSMUSG00000062627.10	novel	704	3	NA	NA	-2	579	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	32.8937684067971	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTCTTTTATAGTATATCT	NA	False	NA	NA	False	NA	NA	NA	94867339	94860090	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_94860704_94861154_94861226_94863453_94863530_94867240
transcript_63064.known	chr4	-	704	3	FSM	ENSMUSG00000062627.10	ENSMUST00000136130.2	704	3	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	6	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACTCAGTTTTCTTATAT	NA	False	NA	NA	False	NA	NA	NA	94867312	94860669	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_94861226_94863453_94863530_94867240
transcript_63066.nic	chr4	-	497	2	ISM	ENSMUSG00000062627.10	ENSMUST00000136130.2	704	3	-27	2462	-2	-2462	5prime_fragment	FALSE	canonical	3	76	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAGAAAAAAAAATAG	NA	False	NA	NA	False	NA	NA	NA	94867339	94863131	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_94863530_94867240
transcript_63068.nnic	chr4	+	438	3	NNC	ENSMUSG00000087366.8	novel	730	4	NA	NA	-625	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTGTGGTCCTTATCCCT	NA	False	NA	NA	False	AATAAA	-15	NA	94940562	94955659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_94940620_94953849_94953982_94955410
transcript_6307.known	chr10	-	768	3	FSM	ENSMUSG00000078453.4	ENSMUST00000220110.2	768	3	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	67	2961	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATTTCCTGGTGGCTGTG	NA	False	NA	-8	True	AATAAA	-18	NA	17898966	17887011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_17887565_17894586_17894650_17898814
transcript_63070.known	chr4	-	3189	1	FSM	ENSMUSG00000052684.5	ENSMUST00000107094.2	3189	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTTTCCCTTTGCTAAT	5509	False	NA	NA	False	AATAAA	-33	NA	94940459	94937270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_94937300_94940500
transcript_63071.nnic	chr4	+	1964	17	NNC	ENSMUSG00000028573.19	novel	1891	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	9.54082510844843	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAACTGGAGTCACTTATG	NA	False	NA	5	True	AATAAA	-18	NA	95445743	95815171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_95445829_95454054_95454133_95473468_95473685_95485859_95485972_95489201_95489354_95511717_95511807_95585196_95585313_95627025_95627155_95657662_95657767_95688793_95688902_95700344_95700407_95710214_95710363_95725821_95725897_95732309_95732431_95737818_95737914_95811161_95811224_95814959
transcript_63072.known	chr4	+	1891	16	FSM	ENSMUSG00000028573.19	ENSMUST00000079223.11	1891	16	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_11	4.66476151587624	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAGTCACTTATGTCTGT	NA	False	NA	10	True	AATAAA	-23	NA	95445743	95815176	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_95445829_95473468_95473685_95485859_95485972_95489201_95489354_95511717_95511807_95585196_95585313_95627025_95627155_95657662_95657767_95688793_95688902_95700344_95700407_95710214_95710363_95725821_95725897_95732309_95732431_95737818_95737914_95811161_95811224_95814959
transcript_6309.known	chr10	+	2595	20	FSM	ENSMUSG00000019854.18	ENSMUST00000126390.8	2595	20	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_9	41.6677266716506	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTCTCTGGAGAATACAT	NA	False	NA	2	True	AATAAA	-13	NA	17931687	18000880	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_17931864_17965195_17965320_17968592_17968790_17968917_17969072_17969526_17969652_17970157_17970321_17970592_17970657_17971929_17972085_17979901_17980024_17983415_17983497_17990146_17990235_17991463_17991566_17993412_17993483_17994674_17994794_17995912_17995978_17996780_17996967_17998182_17998279_17998772_17998922_17999346_17999453_18000627
transcript_63095.known	chr4	+	2336	16	FSM	ENSMUSG00000028572.14	ENSMUST00000125627.8	2336	16	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_6	15.7160922482516	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGGTAG	4837	False	NA	NA	False	AAGAAA	-27	NA	95855599	95903717	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_95855794_95862622_95862709_95877874_95877948_95880385_95880437_95881302_95881436_95884000_95884069_95884995_95885059_95886931_95887016_95889406_95889574_95890680_95890822_95891718_95891921_95892533_95892645_95897538_95897627_95897705_95897767_95901434_95901576_95903044
transcript_63096.known	chr4	-	3605	9	FSM	ENSMUSG00000052914.5	ENSMUST00000030303.6	3605	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.40867845869808	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCCTGGACCTCCTCTCTG	NA	False	NA	NA	False	AATAAA	-18	NA	96441898	96404374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_96406443_96411939_96412079_96414075_96414264_96417621_96417761_96419868_96420046_96423682_96423844_96424232_96424383_96433935_96434099_96441478
transcript_63097.known	chr4	-	813	6	FSM	ENSMUSG00000028563.17	ENSMUST00000107051.10	813	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	223.805808682438	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTGACCTGTTATTAA	NA	False	NA	-4	True	AATAAA	-18	NA	98271297	98243606	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_98243918_98246154_98246285_98253799_98253874_98258728_98258821_98263156_98263266_98271200
transcript_63100.known	chr4	-	1027	7	FSM	ENSMUSG00000028563.17	ENSMUST00000102793.11	1027	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	212.976328888134	2595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTGACCTGTTATTAA	NA	False	NA	-4	True	AATAAA	-18	NA	98271543	98243606	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_98243918_98246154_98246285_98253799_98253874_98258728_98258821_98263156_98263266_98268854_98268929_98271306
transcript_63101.known	chr4	+	2104	15	FSM	ENSMUSG00000061859.18	ENSMUST00000107030.9	2104	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_14	5.57554792768187	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTCTGGTCTGTGGTGTTC	NA	False	NA	NA	False	NA	NA	NA	98284128	98342944	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_98284162_98293615_98293672_98293771_98293939_98297391_98297587_98299263_98299404_98301240_98301437_98304867_98304997_98312512_98312732_98314249_98314350_98317171_98317264_98319994_98320137_98325566_98325708_98329290_98329380_98331987_98332045_98342596
transcript_63104.nic	chr4	+	3247	4	NIC	ENSMUSG00000087166.10	novel	2942	5	NA	NA	-65	8	intron_retention	FALSE	canonical	3	192	junction_2	120.477752671972	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAATGTCCCTGCTTATTT	NA	False	NA	40	True	NA	NA	NA	98614905	98626725	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_98615078_98615631_98615708_98621359_98622316_98624682
transcript_63106.nic	chr4	+	3227	4	ISM	ENSMUSG00000087166.10	ENSMUST00000154279.3	2942	5	-79	-8	-65	8	intron_retention	FALSE	canonical	3	363	junction_2	40.8765077873452	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAATGTCCCTGCTTATTT	NA	False	NA	40	True	NA	NA	NA	98614905	98626725	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_98615078_98615631_98615708_98621379_98622316_98624682
transcript_63107.known	chr4	+	705	3	FSM	ENSMUSG00000087166.10	ENSMUST00000152889.9	705	3	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_2	120.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAAGCCCTGCGTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	98614970	98621881	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_98615078_98615631_98615708_98621359
transcript_63108.nic	chr4	+	1151	3	ISM	ENSMUSG00000087166.10	ENSMUST00000154279.3	2942	5	-79	4435	-65	401	5prime_fragment	FALSE	canonical	3	363	junction_2	35	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGGAAGAAGAAACGAGCT	NA	False	NA	NA	False	NA	NA	NA	98614905	98622282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_98615078_98615631_98615708_98621379
transcript_63110.known	chr4	+	2942	5	FSM	ENSMUSG00000087166.10	ENSMUST00000154279.3	2942	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	184.711937892492	949	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTTTACTTAATGTCCCT	NA	False	NA	32	True	NA	NA	NA	98614984	98626717	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_98615078_98615631_98615708_98621379_98622316_98624682_98624985_98625182
transcript_63113.known	chr4	+	2251	3	FSM	ENSMUSG00000085843.2	ENSMUST00000133455.2	2251	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	4	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTCTGCCTTGTTT	NA	False	NA	NA	False	TATAAA	-41	NA	98682004	98687137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_98682120_98684245_98684324_98685079
transcript_63120.known	chr4	+	2792	11	FSM	ENSMUSG00000028550.16	ENSMUST00000180278.2	2792	11	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	10.6155546251715	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACACTTTTGTTTTGG	NA	False	NA	9	True	NA	NA	NA	99082383	99148020	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_99082521_99100813_99100949_99104114_99104199_99106201_99106436_99109428_99109760_99111109_99111181_99112650_99112788_99116792_99116872_99117724_99117802_99123303_99123424_99146633
transcript_63121.known	chr4	+	3178	11	FSM	ENSMUSG00000028550.16	ENSMUST00000030279.15	3178	11	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	14.1265707091282	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACTTTTGTTTTGGTTTT	NA	False	NA	13	True	NA	NA	NA	99082170	99148024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_99082690_99100813_99100949_99104114_99104199_99106201_99106436_99109428_99109760_99111109_99111181_99112650_99112788_99116792_99116872_99117724_99117802_99123303_99123424_99146633
transcript_6313.known	chr10	-	1190	6	FSM	ENSMUSG00000059554.13	ENSMUST00000080860.13	1190	6	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	8.9977775033616	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGTTTTCTGTTTAGAA	NA	False	NA	0	True	AATAAA	-21	NA	18110744	18089423	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_18089927_18092007_18092031_18095235_18095391_18100644_18100809_18106166_18106367_18110599
transcript_63130.known	chr4	+	3079	15	FSM	ENSMUSG00000073792.12	ENSMUST00000097961.9	3079	15	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	55.2805922322746	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTGCGTGTATTTCTT	NA	False	NA	18	True	ATTAAA	-18	NA	99603901	99651697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_99603944_99607267_99607471_99615099_99615185_99626360_99626451_99627450_99627540_99629770_99629854_99630591_99630657_99631991_99632178_99632726_99632863_99634562_99634649_99636922_99637008_99638965_99639037_99641053_99641123_99641229_99641429_99650107
transcript_63132.known	chr4	+	3947	14	FSM	ENSMUSG00000073792.12	ENSMUST00000144805.8	3947	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	57.1968468531337	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGTCCCAGCTGGTCGT	NA	False	NA	NA	False	AAAACA	-8	NA	99603901	99650548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_99603944_99607267_99607471_99615099_99615185_99626360_99626451_99627450_99627540_99629770_99629854_99630591_99630657_99631991_99632178_99632726_99632863_99634562_99634649_99636922_99637008_99638965_99641123_99641229_99641429_99650107
transcript_6314.known	chr10	-	882	5	FSM	ENSMUSG00000059554.13	ENSMUST00000174592.8	882	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_4	27.2901080979904	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTCATCTCTGTTTTCTGT	NA	False	NA	-6	True	AATAAA	-15	NA	18103221	18089429	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_18089927_18092007_18092031_18095235_18095391_18100644_18100809_18103178
transcript_63142.nic	chr4	+	2640	10	NIC	ENSMUSG00000073792.12	novel	3079	15	NA	NA	-73	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	60.5042596194579	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTGCGTGTATTTCTT	NA	False	NA	18	True	ATTAAA	-18	NA	99603827	99651697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_99603944_99607267_99607471_99615099_99615185_99632726_99632863_99634562_99634649_99636922_99637008_99638965_99639037_99641053_99641123_99641229_99641429_99650107
transcript_63146.nic	chr4	+	754	5	ISM	ENSMUSG00000073792.12	ENSMUST00000144805.8	3947	14	-74	22838	-73	0	5prime_fragment	FALSE	canonical	3	166	junction_1	24.1557446583623	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAGAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	99603827	99627710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_99603944_99607267_99607471_99615099_99615185_99626360_99626451_99627450
transcript_63147.nic	chr4	+	1760	4	ISM	ENSMUSG00000073792.12	ENSMUST00000144805.8	3947	14	-74	22832	-73	6	intron_retention	FALSE	canonical	3	166	junction_1	24.8506650928211	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAAGAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	99603827	99627716	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_99603944_99607267_99607471_99615099_99615185_99626360
transcript_6315.known	chr10	-	590	5	FSM	ENSMUSG00000059554.13	ENSMUST00000173243.8	590	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	27.6981497577004	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATCTTCCACCGCAAACT	NA	False	NA	NA	False	NA	NA	NA	18110746	18089825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_18089927_18092007_18092031_18095235_18095391_18100644_18100809_18110599
transcript_63154.known	chr4	-	2806	9	FSM	ENSMUSG00000028549.18	ENSMUST00000146258.2	2806	9	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_5	47.6377935572167	953	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTAGGGTGCAAGGCAA	NA	False	NA	NA	False	AATATA	-39	NA	99717423	99653638	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_99655814_99657730_99657779_99668998_99669059_99670113_99670208_99677837_99677917_99686932_99687000_99690333_99690470_99702294_99702338_99717319
transcript_63157.nnic	chr4	-	666	8	NIC	ENSMUSG00000028549.18	novel	2806	9	NA	NA	0	-75	combination_of_known_splicesites	FALSE	canonical	3	12	junction_6	80.1386553520375	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGCCTTTGTGTGCAAAA	NA	False	NA	-17	True	AATAAA	-14	NA	99717423	99655642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_99655814_99657730_99657779_99668998_99669059_99670113_99670208_99677837_99677917_99686932_99687000_99702294_99702338_99717319
transcript_6316.known	chr10	-	2255	5	FSM	ENSMUSG00000059554.13	ENSMUST00000052648.9	2255	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	22.796655456448	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGGAAAGAGCCAACTCC	NA	False	NA	NA	False	NA	NA	NA	18110726	18092531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_18094141_18095235_18095391_18100644_18100809_18106166_18106367_18110599
transcript_63169.nic	chr4	-	789	7	NIC	ENSMUSG00000028549.18	novel	716	8	NA	NA	-190	-75	combination_of_known_junctions	FALSE	canonical	3	8	junction_5	78.2206636524021	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGCCTTTGTGTGCAAAA	NA	False	NA	-17	True	AATAAA	-14	NA	99717613	99655642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_99655814_99657730_99657779_99668998_99669059_99670113_99670208_99677837_99677917_99702294_99702338_99717319
transcript_63176.known	chr4	+	2121	14	FSM	ENSMUSG00000073791.14	ENSMUST00000136874.4	2121	14	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	5.10481846862679	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGACTGTCTTGTTAATTG	2075	False	NA	NA	False	AATACA	-19	NA	99717736	99769985	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_99717792_99719629_99719818_99731496_99731709_99732648_99732736_99735289_99735486_99735908_99736028_99746056_99746199_99754598_99754709_99757733_99757892_99758840_99758975_99761882_99762032_99766776_99766987_99768120_99768229_99769732
transcript_63177.nic	chr4	+	2193	14	NIC	ENSMUSG00000073791.14	novel	2121	14	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	4.74933816628712	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGTGACTGTCTTGTTAA	2003	False	NA	NA	False	AATACA	-16	NA	99717664	99769982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_99717792_99719626_99719818_99731496_99731709_99732648_99732736_99735289_99735486_99735908_99736028_99746056_99746199_99754598_99754709_99757733_99757892_99758840_99758975_99761882_99762032_99766776_99766987_99768120_99768229_99769732
transcript_63185.known	chr4	+	2371	11	FSM	ENSMUSG00000025791.19	ENSMUST00000058351.16	2371	11	0	0	0	0	multi-exon	TRUE	canonical	3	174	junction_5	14.102836594104	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTTGTCGCTTTTATTC	NA	False	NA	16	True	ATTAAA	-19	NA	99786610	99844491	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_99787009_99818652_99818816_99819240_99819388_99820714_99820841_99821871_99822063_99824255_99824411_99827183_99827300_99836061_99836198_99839080_99839265_99841165_99841301_99843871
transcript_63189.known	chr4	+	5765	27	FSM	ENSMUSG00000028532.15	ENSMUST00000030257.15	5765	27	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_5	18.5926832335326	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGGCTGCTGGTATCTGA	NA	False	NA	18	True	AATAAA	-20	NA	100633871	100861741	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_100634566_100722178_100722242_100754853_100755003_100775238_100775346_100806269_100806397_100809202_100809348_100810230_100810448_100816646_100816797_100821622_100821857_100823381_100823532_100824142_100824267_100825253_100825372_100828077_100828247_100831202_100831346_100831975_100832158_100833542_100833654_100838167_100838291_100840501_100840602_100840690_100840808_100845278_100845440_100845747_100845835_100846575_100846693_100848020_100848173_100849925_100850088_100851231_100851310_100851931_100852034_100860058
transcript_63191.known	chr4	-	4906	25	FSM	ENSMUSG00000028530.15	ENSMUST00000102781.10	4906	25	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_18	17.726657186283	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGCATATGCCTTTTAATA	NA	False	NA	-7	True	AATAAA	-17	NA	101122479	101009563	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_101010788_101011734_101011846_101012212_101012331_101013589_101013763_101014148_101014274_101014950_101015144_101016010_101016106_101016211_101016363_101017228_101017381_101019003_101019140_101020045_101020174_101020854_101020943_101021654_101021799_101023739_101023847_101028431_101028619_101031282_101031407_101032270_101032429_101034764_101034954_101036651_101036992_101038976_101039141_101041533_101041688_101046275_101046400_101048671_101048871_101050979_101051061_101122238
transcript_63200.known	chr4	+	4360	6	FSM	ENSMUSG00000028527.19	ENSMUST00000106946.8	4360	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	102.253410701062	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTGATGGAATTTCATAA	NA	False	NA	19	True	AATAAA	-17	NA	101276485	101324192	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_101276754_101276925_101277163_101304356_101304477_101317696_101317870_101320145_101320265_101320749
transcript_63201.known	chr4	+	4186	6	FSM	ENSMUSG00000028527.19	ENSMUST00000102780.8	4186	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	98.0848612172133	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTGATGGAATTTCATAA	NA	False	NA	19	True	AATAAA	-17	NA	101276473	101324192	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_101276568_101276925_101277163_101304356_101304477_101317696_101317870_101320145_101320265_101320749
transcript_63203.nnic	chr4	+	965	3	NNC	ENSMUSG00000028527.19	novel	4360	6	NA	NA	-82	-38031	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_2	4.5	43	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCTGAAATGTTTCTATT	NA	False	NA	NA	False	NA	NA	NA	101276391	101279747	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_101276754_101276925_101277163_101279381
transcript_63214.known	chr4	+	1898	4	FSM	ENSMUSG00000035212.15	ENSMUST00000030254.15	1898	4	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_3	48.8011839564939	2399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGAGTTGCATTTCATAAA	8215	False	NA	8	True	AATAAA	-20	NA	101504914	101516561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_101505023_101509595_101509672_101513305_101513493_101515034
transcript_63215.known	chr4	+	1754	4	FSM	ENSMUSG00000035212.15	ENSMUST00000106927.2	1754	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	275.740215903786	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGAGTTGCATTTCATAAA	8290	False	NA	8	True	AATAAA	-20	NA	101504989	101516561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_101505023_101509595_101509672_101513374_101513493_101515034
transcript_63218.nnic	chr4	-	1973	4	NNC	ENSMUSG00000035201.16	novel	1976	4	NA	NA	-29850	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	1.69967317119759	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATCTTCTACTCTTTACT	NA	False	NA	NA	False	ATTAAA	-13	NA	101731070	101692165	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_101693139_101694021_101694595_101695022_101695337_101730957
transcript_63227.known	chr4	-	913	3	FSM	ENSMUSG00000046133.4	ENSMUST00000051043.4	913	3	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_2	115.5	1282	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTTTCTTCTTGATGT	NA	False	NA	-2	True	ATTAAA	-26	NA	101750986	101747216	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_101747741_101747885_101748198_101750909
transcript_63237.nnic	chr4	+	714	3	NNC	ENSMUSG00000070890.4	novel	1452	3	NA	NA	-1951	-1742	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	1	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATATTGAGGAATTGGAAA	NA	False	NA	NA	False	ATTAAA	-27	NA	101795652	101798638	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_101795732_101797576_101797891_101798317
transcript_63242.nnic	chr4	-	2020	3	NNC	ENSMUSG00000078626.3	novel	951	4	NA	NA	9710	1204	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_1	2.5	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGACTGTTTGTTTCTTT	NA	False	NA	NA	False	ATTAAA	-15	NA	101828536	101823445	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_101824980_101825125_101825438_101828362
transcript_63243.nnic	chr4	-	1293	3	NNC	ENSMUSG00000078626.3	novel	951	4	NA	NA	9710	477	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_1	2.5	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCTGGCTGGGTTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	101828536	101824172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_101824980_101825125_101825438_101828362
transcript_63244.nnic	chr4	-	816	3	NNC	ENSMUSG00000078626.3	novel	951	4	NA	NA	9710	0	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_1	2.5	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTACATTCAGGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	101828536	101824649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_101824980_101825125_101825438_101828362
transcript_63245.known	chr4	-	951	4	FSM	ENSMUSG00000078626.3	ENSMUST00000106916.2	951	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	9.42809041582063	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTACATTCAGGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	101838246	101824649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_101824980_101825125_101825438_101826925_101827123_101838134
transcript_63253.nnic	chr4	-	775	4	Antisense	novelGene_ENSMUSG00000028524.22_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_2	1.24721912892465	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCATGTGGAAATCTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	102716636	102698526	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr4_-_102698876_102702150_102702386_102702701_102702798_102716541
transcript_63256.nnic	chr4	-	666	3	Antisense	novelGene_ENSMUSG00000028524.22_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_2	1.5	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCATGTGGAAATCTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	102716623	102698526	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr4_-_102698876_102702150_102702386_102716541
transcript_6326.nnic	chr10	-	1286	4	Antisense	novelGene_ENSMUSG00000039835.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	4.02768199119819	27	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTGTCTTGGTTTCATC	NA	False	NA	NA	False	NA	NA	NA	18379143	18365029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr10_-_18365779_18373841_18373946_18376937_18377052_18378824
transcript_63260.known	chr4	+	4830	15	FSM	ENSMUSG00000028522.17	ENSMUST00000106858.8	4830	15	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	48.3934238237775	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGGTGTCTAGTTAT	2517	False	NA	17	True	ATTAAA	-18	NA	102971591	103022951	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_102971717_102972756_102972858_102975438_102975513_102984469_102984495_102988162_102988309_102996554_102996714_102997307_102997441_102998033_102998099_103000330_103000404_103005495_103005648_103006320_103006403_103007730_103007826_103012683_103012812_103016878_103017019_103019619
transcript_63265.known	chr4	+	4752	13	FSM	ENSMUSG00000028522.17	ENSMUST00000106857.8	4752	13	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	18.0662361572323	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGTGTGGTGTCTAGTT	343	False	NA	15	True	ATTAAA	-16	NA	102976482	103022949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_102976707_102984469_102984495_102988162_102988309_102996554_102996714_102997307_102997441_102998033_102998099_103000330_103000404_103005495_103005648_103006320_103006403_103007730_103007826_103012683_103012812_103016878_103017019_103019619
transcript_63271.known	chr4	+	821	9	FSM	ENSMUSG00000028522.17	ENSMUST00000149259.8	821	9	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	55.8232422472934	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAATGAAAAAGGTGAGTT	2587	False	NA	NA	False	NA	NA	NA	102971661	103000390	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_102971717_102972756_102972858_102975435_102975513_102984469_102984495_102988162_102988309_102996554_102996714_102997307_102997441_102998033_102998099_103000330
transcript_63275.known	chr4	+	1918	7	FSM	ENSMUSG00000028522.17	ENSMUST00000124348.2	1918	7	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	20.8619803044251	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAAAAAAAAAAAAGA	467	False	NA	NA	False	NA	NA	NA	102976606	103001620	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_102976707_102984469_102984495_102988162_102988309_102996554_102996714_102997307_102997441_102998033_102998099_103000330
transcript_6328.nnic	chr10	-	1129	4	Antisense	novelGene_ENSMUSG00000039835.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	3.68178700572909	25	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTGTCTTGGTTTCATC	NA	False	NA	NA	False	NA	NA	NA	18379130	18365029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr10_-_18365779_18373841_18373946_18376937_18377052_18378968
transcript_63282.known	chr4	+	475	2	FSM	ENSMUSG00000028522.17	ENSMUST00000136092.2	475	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATCCTTTGAAGGGTCAA	2512	False	NA	NA	False	AAAAAG	-19	NA	102971586	102973101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_102971717_102972756
transcript_63284.known	chr4	-	4021	12	FSM	ENSMUSG00000028521.18	ENSMUST00000036195.13	4021	12	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_4	6.03022689155527	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAAATGTGTGTTAGAAT	5658	False	NA	-5	True	AATAAA	-10	NA	103072000	103027852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_103030978_103042018_103042102_103046983_103047063_103048028_103048097_103062302_103062396_103065306_103065410_103067725_103067795_103068499_103068572_103070361_103070430_103071067_103071155_103071255_103071290_103071860
transcript_63290.nnic	chr4	+	2010	10	NNC	ENSMUSG00000035069.4	novel	1915	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	38.2935381197454	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTGCCTTAGTTTGTAG	42	False	NA	16	True	AATAAA	-28	NA	103171008	103223640	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_103171081_103173440_103173536_103176218_103176726_103178836_103179066_103182215_103182390_103182489_103182598_103186034_103186164_103188501_103188577_103210698_103210849_103223169
transcript_63292.known	chr4	+	1915	9	FSM	ENSMUSG00000035069.4	ENSMUST00000035780.4	1915	9	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	14.2560294261761	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTGCCTTAGTTTGTAG	42	False	NA	16	True	AATAAA	-28	NA	103171008	103223640	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_103171081_103176218_103176726_103178836_103179066_103182215_103182390_103182489_103182598_103186034_103186164_103188501_103188577_103210698_103210849_103223169
transcript_63298.nnic	chr4	+	1768	8	NIC	ENSMUSG00000035069.4	novel	1915	9	NA	NA	-17	-14	combination_of_known_splicesites	FALSE	canonical	2	9	junction_7	27.5680975041804	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCACTGTCATCTGTCCTT	25	False	NA	2	True	AATAAA	-14	NA	103170991	103223626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_103171081_103176218_103176726_103178836_103179066_103182215_103182390_103182489_103182598_103186034_103186164_103188501_103188577_103223169
transcript_63299.nnic	chr4	+	1803	8	NIC	ENSMUSG00000035069.4	novel	1915	9	NA	NA	-17	0	combination_of_known_splicesites	FALSE	canonical	3	9	junction_5	32.5739347406756	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTGCCTTAGTTTGTAG	25	False	NA	16	True	AATAAA	-28	NA	103170991	103223640	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_103171081_103176218_103176726_103178836_103179066_103182215_103182390_103182489_103182598_103188501_103188577_103210698_103210849_103223169
transcript_63302.nnic	chr4	+	1179	7	NIC	ENSMUSG00000035069.4	novel	1915	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	38.1735801598726	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTGCCTTAGTTTGTAG	42	False	NA	16	True	AATAAA	-28	NA	103171008	103223640	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_103171081_103182215_103182390_103182489_103182598_103186034_103186164_103188501_103188577_103210698_103210849_103223169
transcript_63304.nnic	chr4	+	1787	2	Genic_Genomic	ENSMUSG00000059195.11	novel	1128	1	NA	NA	-75	728	multi-exon	FALSE	canonical	0	0	junction_1	0	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTTCAAGAGATATGAAT	NA	False	NA	NA	False	NA	NA	NA	103420523	103422454	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr4_+_103421939_103422082
transcript_63306.nic	chr4	+	1338	8	NIC	ENSMUSG00000028519.17	novel	974	6	NA	NA	-57	0	combination_of_known_junctions	FALSE	canonical	1	4	junction_1	15.8642197850306	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGACTGTTGTAACTTT	NA	False	NA	8	True	AATAAA	-15	NA	104224252	104537579	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_104224667_104336270_104336473_104462494_104462635_104470365_104470465_104535898_104536031_104536649_104536770_104537266_104537306_104537387
transcript_63308.nic	chr4	+	1110	8	NIC	ENSMUSG00000028519.17	novel	5278	15	NA	NA	-58	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_7	7.28991475552747	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGACTGTTGTAACTTT	NA	False	NA	8	True	AATAAA	-15	NA	104224728	104537579	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_104224915_104336270_104336473_104462494_104462635_104470365_104470465_104535898_104536031_104536649_104536770_104537266_104537306_104537387
transcript_63311.nic	chr4	+	1192	7	ISM	ENSMUSG00000028519.17	ENSMUST00000106830.9	5278	15	-58	64462	-58	0	5prime_fragment	FALSE	canonical	3	42	junction_1	2.40947204913349	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGACTGTTGTAACTTT	NA	False	NA	8	True	AATAAA	-15	NA	104224728	104537579	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_104224915_104336270_104336473_104462494_104462635_104470365_104470465_104535898_104536031_104536649_104536770_104537266
transcript_63312.known	chr4	+	974	6	FSM	ENSMUSG00000028519.17	ENSMUST00000143644.8	974	6	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	17.6340579561257	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATGAGCTGAAGCAAAGAG	NA	False	NA	NA	False	NA	NA	NA	104224309	104536693	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_104224667_104336270_104336473_104462494_104462635_104470365_104470465_104535898_104536031_104536649
transcript_63318.known	chr4	+	1061	4	FSM	ENSMUSG00000029656.14	ENSMUST00000123892.2	1061	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	0.816496580927726	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAATGATCTCTGTGTGG	NA	False	NA	NA	False	AATAAA	-15	NA	104656404	104661737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_104656711_104657531_104657686_104658534_104658604_104661205
transcript_63321.known	chr4	-	7969	9	FSM	ENSMUSG00000028518.9	ENSMUST00000030243.8	7969	9	0	0	0	0	multi-exon	TRUE	canonical	3	64	junction_5	8.06903804675625	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTGTCTGAAGCTGCCTT	NA	False	NA	0	True	AATAAA	-15	NA	104967087	104887070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_104893528_104893895_104894023_104896918_104897424_104904287_104904513_104906530_104906619_104908398_104908544_104909112_104909207_104932610_104932753_104966901
transcript_63323.known	chr4	+	3159	6	FSM	ENSMUSG00000028517.9	ENSMUST00000064139.8	3159	6	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_2	17.8616908494129	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCACTGGTGCCTGAGCTGT	NA	False	NA	13	True	AATAAA	-23	NA	105014543	105089961	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_105015161_105051999_105052158_105065720_105066002_105066396_105066455_105076524_105076702_105088093
transcript_63329.nnic	chr4	+	564	3	NNC	ENSMUSG00000028517.9	novel	3159	6	NA	NA	-14529	-74722	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCATCTCCCCCACCCCCG	NA	False	NA	NA	False	NA	NA	NA	105000014	105015239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_105000144_105001835_105001930_105014898
transcript_6333.known	chr10	-	968	4	FSM	ENSMUSG00000019853.7	ENSMUST00000213153.2	968	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	12.4988888395018	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCCTTGCCTCCGCTGTT	NA	False	NA	NA	False	AGTAAA	-22	NA	18421635	18416505	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_18417081_18420130_18420194_18420825_18420962_18421441
transcript_63333.nnic	chr4	-	395	2	Intergenic	novelGene_91	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	16	junction_1	0	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTGTATGACCGTCCTTC	NA	False	NA	NA	False	GATAAA	-22	NA	106173390	106172807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr4_-_106173071_106173258
transcript_63335.known	chr4	-	3521	12	FSM	ENSMUSG00000044254.7	ENSMUST00000049507.6	3521	12	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_11	3.44016144153173	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCTGCCTGCTTACCAGG	NA	False	NA	NA	False	AATAAA	-33	NA	106321526	106299525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_106300756_106301873_106302056_106303792_106303971_106304326_106304476_106304703_106304878_106306056_106306241_106307236_106307434_106311421_106311564_106311709_106311844_106314061_106314186_106316033_106316226_106320891
transcript_63336.known	chr4	-	2756	4	FSM	ENSMUSG00000025418.8	ENSMUST00000054472.4	2756	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	0.942809041582063	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCACCTTTATTCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	106349480	106340652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_106342643_106343780_106344036_106345175_106345268_106349061
transcript_63337.known	chr4	+	4028	9	FSM	ENSMUSG00000034926.4	ENSMUST00000047973.4	4028	9	0	0	0	0	multi-exon	FALSE	canonical	3	318	junction_6	36.7353287041235	188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTTGTCATTTATTCAG	NA	False	NA	18	True	AATAAA	-18	NA	106418234	106446310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_106418595_106421597_106421754_106428608_106428715_106429421_106429541_106430924_106431189_106435386_106435531_106442986_106443185_106443541_106443721_106443808
transcript_63338.nic	chr4	-	2081	8	ISM	ENSMUSG00000054362.10	ENSMUST00000106788.2	1569	10	1423	-402	1423	1	3prime_fragment	FALSE	canonical	1	5	junction_3	4.52656557650139	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGTTCTACCAGTTGTTT	NA	False	NA	NA	False	AATAAA	-24	NA	106473012	106448104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_106448885_106464485_106464620_106467596_106467723_106468609_106468772_106470305_106470450_106470564_106470700_106472231_106472355_106472535
transcript_63340.known	chr4	+	2191	2	FSM	ENSMUSG00000043572.8	ENSMUST00000058905.8	2191	2	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTGTGTGTGTGTGTGTG	NA	False	NA	5	True	AATAAA	-20	NA	106508302	106512479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_106508329_106510314
transcript_63341.known	chr4	+	502	2	FSM	ENSMUSG00000043572.8	ENSMUST00000106782.2	502	2	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCAGGGAGCTGCTGAGA	NA	False	NA	NA	False	NA	NA	NA	106508265	106510736	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_106508346_106510314
transcript_63342.known	chr4	-	2121	10	FSM	ENSMUSG00000025413.14	ENSMUST00000026480.13	2121	10	0	0	0	0	multi-exon	TRUE	canonical	3	276	junction_4	15.561903466677	297	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGTTGTTTGTGTCCT	NA	False	NA	1	True	ATTAAA	-41	NA	106536141	106519452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_106520429_106522852_106522936_106524692_106524775_106525233_106525452_106527645_106527733_106528820_106528946_106531607_106531686_106533794_106533957_106535381_106535500_106535949
transcript_63344.known	chr4	+	1923	8	FSM	ENSMUSG00000034871.3	ENSMUST00000047620.3	1923	8	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	2.64189171555813	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCACTGTGTAAGACCTGGG	2113	False	NA	4	True	NA	NA	NA	106591085	106605489	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_106591286_106592646_106592794_106599341_106599495_106600393_106600554_106602669_106602895_106603252_106603393_106604169_106604314_106604735
transcript_63345.known	chr4	+	3195	18	FSM	ENSMUSG00000061887.15	ENSMUST00000030367.15	3195	18	0	0	0	0	multi-exon	TRUE	canonical	3	121	junction_13	39.9235428457496	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTCCTGACATACTTGT	NA	False	NA	16	True	ATTAAA	-20	NA	106768666	106906891	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_106769110_106770099_106770173_106770401_106770464_106772841_106772927_106866875_106866966_106884413_106884495_106885389_106885450_106888058_106888126_106888211_106888289_106894132_106894198_106894798_106894848_106895418_106895455_106895922_106895978_106897159_106897231_106903512_106903592_106904438_106904468_106904560_106904663_106905220
transcript_63347.known	chr4	+	1924	17	FSM	ENSMUSG00000061887.15	ENSMUST00000072753.13	1924	17	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_5	51.1955503437555	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGAAAACCCCACAAGCC	NA	False	NA	NA	False	NA	NA	NA	106768729	106905764	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_106769110_106770099_106770173_106770401_106770464_106772841_106772927_106866875_106866966_106885389_106885450_106888058_106888126_106888211_106888289_106894132_106894198_106894798_106894848_106895418_106895455_106895922_106895978_106897159_106897231_106903512_106903592_106904438_106904468_106904560_106904663_106905220
transcript_6335.known	chr10	-	2535	4	FSM	ENSMUSG00000019853.7	ENSMUST00000020000.7	2535	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	0.471404520791032	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGTGGTTCTTGGATCAT	NA	False	NA	NA	False	TTTAAA	-18	NA	18421824	18415245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_18417081_18420012_18420194_18420825_18420962_18421441
transcript_63350.known	chr4	-	1498	7	FSM	ENSMUSG00000028622.12	ENSMUST00000030365.6	1498	7	0	0	0	0	multi-exon	FALSE	canonical	3	549	junction_3	34.5976877840124	2028	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTGTCTGTGAGATATTA	NA	False	NA	-8	True	AATAAA	-23	NA	106924065	106913070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_106913302_106914568_106914773_106917679_106917838_106919079_106919266_106921581_106921698_106921783_106921968_106923646
transcript_63352.known	chr4	+	2516	7	FSM	ENSMUSG00000028621.18	ENSMUST00000106758.8	2516	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	4.2687494916219	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGACACTTTGTTTTGT	931	False	NA	16	True	ATTAAA	-16	NA	106924184	106943023	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_106924243_106925808_106926021_106928066_106928216_106931069_106931158_106934872_106934978_106938087_106938292_106941323
transcript_63360.known	chr4	+	1775	8	FSM	ENSMUSG00000028618.12	ENSMUST00000030361.11	1775	8	0	0	0	0	multi-exon	FALSE	canonical	3	1513	junction_5	112.332959889567	3969	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGAGTGTTGGGCTTTCT	NA	False	NA	15	True	ATTAAA	-27	NA	107035595	107058193	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_107036115_107042974_107043081_107044815_107044911_107047731_107047885_107049658_107049741_107050495_107050578_107054702_107054812_107057564
transcript_63362.known	chr4	+	1332	8	FSM	ENSMUSG00000028618.12	ENSMUST00000127652.2	1332	8	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	584.439518701814	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTTGAGTGTTGGGCTTT	72	False	NA	13	True	ATTAAA	-25	NA	107036214	107058191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_107036293_107042974_107043081_107044815_107044911_107047731_107047885_107049658_107049741_107050495_107050578_107054702_107054812_107057564
transcript_63364.known	chr4	+	852	7	FSM	ENSMUSG00000028618.12	ENSMUST00000154007.8	852	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	632.858506215164	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCACTCAGAAATCTAAGCT	NA	False	NA	NA	False	NA	NA	NA	107035922	107057703	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_107036115_107044815_107044911_107047731_107047885_107049658_107049741_107050495_107050578_107054702_107054812_107057564
transcript_63369.known	chr4	-	935	5	FSM	ENSMUSG00000028619.16	ENSMUST00000030362.12	935	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	29.5761728423405	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTGGATATTCCCATGGT	NA	False	NA	NA	False	NA	NA	NA	107036300	106996729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_106996997_107004711_107004906_107022744_107022887_107034761_107034902_107036108
transcript_63372.known	chr4	-	6431	5	FSM	ENSMUSG00000028619.16	ENSMUST00000057043.10	6431	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	11	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATATCTATTTATTGG	NA	False	NA	NA	False	AATAAA	-17	NA	107035744	106991351	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_106996997_107004711_107004906_107022744_107022887_107034761_107034902_107035434
transcript_63376.known	chr4	-	1755	8	FSM	ENSMUSG00000028617.11	ENSMUST00000030360.11	1755	8	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_4	9.55755924781585	2134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGCTTTTGAATTGCAGA	NA	False	NA	-5	True	AATAAA	-20	NA	107110729	107090710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_107091182_107092996_107093082_107096274_107096389_107096908_107096998_107098098_107098218_107100404_107100537_107104490_107104978_107110471
transcript_6339.known	chr10	-	14579	34	FSM	ENSMUSG00000019852.8	ENSMUST00000215836.2	14579	34	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_19	2.00045908413321	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGATGTGGAGAGCAATTT	NA	False	NA	NA	False	AATAAA	-20	NA	18619697	18457586	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_18465521_18466877_18468091_18470655_18470778_18473075_18473208_18473443_18473547_18474933_18475049_18476181_18476359_18479154_18479284_18483392_18483538_18484068_18484173_18486951_18487075_18488885_18489031_18492596_18492777_18495395_18495542_18496873_18497008_18500895_18501214_18503368_18503520_18505778_18505890_18506027_18506244_18506566_18506675_18510510_18510677_18511427_18511595_18521908_18522808_18523551_18523665_18528281_18528616_18529957_18530063_18536344_18536424_18537093_18537137_18540638_18540762_18553572_18553642_18572300_18572433_18575076_18575159_18609805_18609858_18619288
transcript_63392.known	chr4	+	581	6	FSM	ENSMUSG00000063172.14	ENSMUST00000152717.8	581	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	155.089135660755	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAATTACAACAAAATGCTC	NA	False	NA	-93	True	NA	NA	NA	107110789	107137034	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_107110925_107119663_107119777_107130809_107130917_107132419_107132489_107135123_107135168_107136921
transcript_63393.known	chr4	+	608	6	FSM	ENSMUSG00000063172.14	ENSMUST00000046558.8	608	6	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_1	99.534114754691	873	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCACTCTGATTCCATTTT	NA	False	NA	-2	True	ATTAAA	-9	NA	107111121	107137125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_107111193_107119663_107119777_107130809_107130917_107132419_107132489_107135123_107135168_107136921
transcript_63396.known	chr4	+	607	6	FSM	ENSMUSG00000063172.14	ENSMUST00000106749.8	607	6	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_1	69.6746725862418	1359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCCATTTTTTTTATATAA	NA	False	NA	8	True	ATTAAA	-19	NA	107111099	107137135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_107111160_107119663_107119777_107130809_107130917_107132419_107132489_107135123_107135168_107136921
transcript_63415.known	chr4	+	365	3	FSM	ENSMUSG00000063172.14	ENSMUST00000137911.2	365	3	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	197	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGATTCCATTTTTTTT	NA	False	NA	2	True	ATTAAA	-13	NA	107119663	107137129	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_107119777_107135123_107135168_107136921
transcript_63420.nnic	chr4	+	1085	8	NNC	ENSMUSG00000057375.14	novel	524	3	NA	NA	2272	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	124.64774857369	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTCCTTCAGCTCTT	-3	True	NA	29	True	AGTAAA	-19	NA	107178439	107217020	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_107178547_107193310_107193392_107193633_107193722_107198182_107198300_107201708_107201876_107202205_107202389_107207610_107207736_107216803
transcript_63425.known	chr4	+	1321	10	FSM	ENSMUSG00000057375.14	ENSMUST00000075693.12	1321	10	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_9	32.5261528202145	1307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTGTGTCCTTCAGCTCT	NA	False	NA	28	True	AGTAAA	-18	NA	107171559	107217019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_107171660_107172959_107173040_107176138_107176303_107193310_107193392_107193633_107193722_107198182_107198300_107201708_107201876_107202205_107202389_107207610_107207736_107216803
transcript_6343.known	chr10	+	1952	3	FSM	ENSMUSG00000019851.9	ENSMUST00000019998.9	1952	3	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	1	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGTCTGCTTTGTAGT	NA	False	NA	12	True	AATAAA	-14	NA	18720767	18732821	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_18721155_18729284_18729426_18731397
transcript_63431.known	chr4	+	4584	18	FSM	ENSMUSG00000028614.15	ENSMUST00000139560.8	4584	18	0	0	0	0	multi-exon	FALSE	canonical	3	529	junction_11	46.6085071760132	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGAATCTCTGTGTGTTT	NA	False	NA	22	True	AATAAA	-33	NA	107224980	107273543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_107225346_107225953_107226075_107228458_107228561_107231343_107231519_107232274_107232414_107237794_107237904_107238872_107238925_107240781_107240918_107241982_107242076_107243792_107243875_107246647_107246804_107247418_107247659_107247745_107247862_107250339_107250391_107252194_107252259_107252928_107253030_107268262_107268424_107271222
transcript_63442.nic	chr4	+	1666	7	ISM	ENSMUSG00000028614.15	ENSMUST00000139560.8	4584	18	-7	34023	-7	-4287	5prime_fragment	FALSE	canonical	3	584	junction_6	27.0842307543625	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGTTGTGGTAGCAGAT	NA	False	NA	NA	False	AATAAA	-18	NA	107224973	107239520	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_107225346_107225953_107226075_107228458_107228561_107231343_107231519_107232274_107232414_107237794_107237904_107238872
transcript_63445.known	chr4	-	1861	4	FSM	ENSMUSG00000028610.17	ENSMUST00000069271.5	1861	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	4.18993502999218	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGTGAAAGCTTTTCTG	NA	False	NA	NA	False	AATAAA	-15	NA	107541427	107533488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_107534267_107536449_107536673_107537842_107538052_107540776
transcript_63446.known	chr4	+	737	4	FSM	ENSMUSG00000028613.16	ENSMUST00000238405.2	737	4	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_2	7.71722460186015	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACCACCTCATGAATAGCC	NA	False	NA	NA	False	NA	NA	NA	107659487	107700678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_107659716_107660447_107660568_107691823_107691947_107700412
transcript_63449.nic	chr4	+	1716	2	ISM	ENSMUSG00000028613.16	ENSMUST00000238570.2	3532	16	38075	-152	7754	-1	3prime_fragment	FALSE	canonical	3	57	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGTATAGAATTTTCTT	NA	False	NA	7	True	AATAAA	-16	NA	107726256	107731094	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_107726348_107729469
transcript_6345.known	chr10	+	1974	7	FSM	ENSMUSG00000020009.14	ENSMUST00000164591.3	1974	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	10.3279555898864	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCACTTGGATATTCATTTA	NA	False	NA	17	True	AGTAAA	-18	NA	19467820	19485977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_19467946_19473163_19473265_19477067_19477232_19479501_19479681_19481981_19482169_19483004_19483130_19484884
transcript_63450.known	chr4	-	1770	2	FSM	ENSMUSG00000087200.2	ENSMUST00000125464.2	1770	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGCACAGTGTGGTATGA	NA	False	NA	NA	False	AATAAA	-11	NA	107659261	107650357	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_107651827_107658960
transcript_63456.known	chr4	+	692	5	FSM	ENSMUSG00000028609.7	ENSMUST00000030348.6	692	5	0	0	0	0	multi-exon	FALSE	canonical	3	977	junction_1	47.9446295219809	14225	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGAATATGTGAATTCTC	NA	False	NA	50	True	AATAAA	-35	NA	107736951	107744621	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_107737143_107738089_107738149_107740264_107740376_107742113_107742197_107744373
transcript_6346.known	chr10	-	8099	10	FSM	ENSMUSG00000020003.17	ENSMUST00000020182.16	8099	10	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_4	9.53874490281544	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTTTCTCCTGAAAGCCA	NA	False	NA	NA	False	ATTAAA	-31	NA	19783435	19729645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_19736741_19745039_19745140_19760523_19760580_19762805_19762920_19764401_19764509_19769995_19770105_19770470_19770549_19780308_19780460_19781590_19781649_19783204
transcript_63466.known	chr4	+	868	7	FSM	ENSMUSG00000028608.16	ENSMUST00000153593.8	868	7	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_1	314.336735577204	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCGTGAAGGTGGTCT	NA	False	NA	14	True	AATAAA	-19	NA	107747436	107754315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_107747747_107748661_107748719_107749156_107749234_107749418_107749451_107750530_107750609_107752069_107752136_107754067
transcript_63468.known	chr4	+	636	6	FSM	ENSMUSG00000028608.16	ENSMUST00000030346.13	636	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	280.922053246092	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGACTCTGGAGGTCTTTG	NA	False	NA	60	True	NA	NA	NA	107747315	107754361	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_107747400_107749151_107749234_107749418_107749451_107750530_107750609_107752069_107752136_107754067
transcript_63469.known	chr4	+	1551	7	FSM	ENSMUSG00000028608.16	ENSMUST00000125107.8	1551	7	0	0	0	0	multi-exon	FALSE	canonical	3	677	junction_4	47.0558179187229	565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGTGTGTATTTATGT	NA	False	NA	23	True	NA	NA	NA	107747095	107754999	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069_107752136_107754067
transcript_63470.known	chr4	+	2997	8	FSM	ENSMUSG00000028608.16	ENSMUST00000135454.8	2997	8	0	0	0	0	multi-exon	FALSE	canonical	3	475	junction_1	98.5130261769001	1013	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGACCTAGTGATGAAAAACA	NA	False	NA	NA	False	AATAAA	-11	NA	107747009	107756581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_107747094_107747315_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069_107752136_107754067
transcript_63471.known	chr4	+	926	9	FSM	ENSMUSG00000028608.16	ENSMUST00000106727.10	926	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	312.597759708863	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCGTGAAGGTGGTCT	NA	False	NA	14	True	AATAAA	-19	NA	107747059	107754315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_107747094_107747315_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069_107752136_107752747_107752784_107753858
transcript_63473.known	chr4	-	2372	5	FSM	ENSMUSG00000028607.17	ENSMUST00000030345.15	2372	5	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_2	11.5866302262565	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGGTTCCTTTTTCCTTA	NA	False	NA	0	True	AATAAA	-18	NA	107780807	107761177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_107761761_107764117_107765423_107769837_107769945_107771460_107771542_107780511
transcript_63475.known	chr4	-	1015	4	FSM	ENSMUSG00000028607.17	ENSMUST00000106720.9	1015	4	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	68.2169741014328	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATCTGGTTCCTTTTTCCT	NA	False	NA	-2	True	AATAAA	-16	NA	107780757	107761179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_107761761_107769837_107769945_107771460_107771542_107780511
transcript_63478.known	chr4	-	2640	16	FSM	ENSMUSG00000028603.16	ENSMUST00000030340.15	2640	16	0	0	0	0	multi-exon	TRUE	canonical	3	305	junction_7	132.795314509043	1249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTGGCTTTTACTGTGT	NA	False	NA	NA	False	ATTAAA	-16	NA	107975729	107901035	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_107902043_107904786_107904867_107912635_107912766_107921082_107921186_107928453_107928608_107931552_107931661_107942351_107942500_107944208_107944360_107948433_107948521_107950020_107950085_107955218_107955346_107959487_107959553_107962240_107962373_107964813_107964886_107969423_107969482_107975575
transcript_6348.known	chr10	+	4252	18	FSM	ENSMUSG00000019996.18	ENSMUST00000020173.16	4252	18	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_11	29.0770364453276	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTTCTATTTATTTAAAT	NA	False	NA	14	True	ATTAAA	-19	NA	20024216	20157268	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_20024827_20106529_20106629_20109114_20109193_20121015_20121180_20122343_20122462_20126115_20126227_20132929_20133044_20137604_20137730_20142481_20142598_20142868_20143123_20145105_20145335_20149025_20149201_20149524_20149627_20149991_20150043_20150347_20150406_20151921_20152022_20153870_20154092_20155741
transcript_63488.known	chr4	-	855	8	FSM	ENSMUSG00000028603.16	ENSMUST00000123792.8	855	8	0	0	0	0	multi-exon	FALSE	canonical	3	321	junction_1	40.7536150894266	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTGTAAAATCAGATGCC	NA	False	NA	NA	False	ATTAAA	-1	NA	107975592	107948200	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_107948521_107950020_107950085_107955218_107955346_107959487_107959553_107962240_107962373_107964813_107964886_107969423_107969482_107975575
transcript_63493.known	chr4	-	772	5	FSM	ENSMUSG00000028603.16	ENSMUST00000106701.2	772	5	0	0	0	0	multi-exon	FALSE	canonical	3	566	junction_3	53.5601297608585	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTCTACTGTGCTTGATG	NA	False	NA	NA	False	NA	NA	NA	107928616	107901746	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_107902043_107904786_107904867_107912635_107912766_107921082_107921186_107928453
transcript_63494.known	chr4	+	1186	9	FSM	ENSMUSG00000028601.19	ENSMUST00000125647.8	1186	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	262.339951208351	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTTGTGCTGGAATTGTT	NA	False	NA	22	True	AATAAA	-15	NA	108022684	108036503	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_108022859_108027057_108027146_108029285_108029373_108030076_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
transcript_63495.known	chr4	+	1307	10	FSM	ENSMUSG00000028601.19	ENSMUST00000052999.13	1307	10	0	0	0	0	multi-exon	TRUE	canonical	3	713	junction_3	43.9463758530471	3553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGCTGGAATTGTTGG	NA	False	NA	24	True	AATAAA	-17	NA	108022633	108036505	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_108022859_108026911_108026980_108027057_108027146_108029285_108029373_108030076_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
transcript_63496.known	chr4	-	2283	14	FSM	ENSMUSG00000034645.15	ENSMUST00000223127.2	2283	14	0	0	0	0	multi-exon	FALSE	canonical	1	26	junction_8	15.5010974988431	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGCGGCCTTTCAGGGGT	5669	False	NA	-114	True	NA	NA	NA	108075119	108038934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_108039111_108040844_108040943_108041629_108041692_108044436_108044632_108046643_108046689_108046765_108046928_108049106_108049161_108049248_108049349_108051179_108051245_108053340_108053518_108058389_108058531_108061791_108062544_108067252_108067419_108075029
transcript_63497.known	chr4	-	8691	14	FSM	ENSMUSG00000034636.10	ENSMUST00000043616.7	8691	14	0	0	0	0	multi-exon	FALSE	canonical	1	32	junction_8	23.507269428335	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGTCTACTTTCACGTC	NA	False	NA	3	True	AATAAA	-21	NA	108158293	108086920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_108093392_108094538_108094637_108099017_108099071_108099196_108099395_108101922_108101971_108102072_108102235_108107691_108107743_108107970_108108071_108109348_108109414_108112397_108112575_108117146_108117288_108123014_108123770_108129414_108129581_108158087
transcript_63498.nic	chr4	-	1208	3	ISM	ENSMUSG00000034636.10	ENSMUST00000043616.7	8691	14	-51	36064	-51	-24322	5prime_fragment	FALSE	canonical	3	118	junction_2	1	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTCAGGTTTTTTTTTCC	NA	False	NA	NA	False	ATTAAA	-18	NA	108158344	108122984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_108123770_108129414_108129581_108158087
transcript_63499.known	chr4	+	341	4	FSM	ENSMUSG00000048351.15	ENSMUST00000141423.8	341	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	200.824965247518	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCAGGAAAGAAGTCTGT	NA	False	NA	NA	False	NA	NA	NA	108185374	108195375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_108185488_108186384_108186416_108189407_108189549_108195319
transcript_63502.known	chr4	+	565	3	FSM	ENSMUSG00000048351.15	ENSMUST00000134394.8	565	3	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_1	212	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTACAAGCTGGGAGATGG	NA	False	NA	NA	False	NA	NA	NA	108185349	108195648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_108185445_108189407_108189549_108195319
transcript_63504.known	chr4	+	767	3	FSM	ENSMUSG00000048351.15	ENSMUST00000073764.13	767	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	216	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGAGTGGCTAGAGTGT	NA	False	NA	-11	True	NA	NA	NA	108185352	108195880	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_108185418_108189407_108189549_108195319
transcript_63505.known	chr4	+	3714	3	FSM	ENSMUSG00000048351.15	ENSMUST00000131656.2	3714	3	0	0	0	0	multi-exon	FALSE	canonical	3	432	junction_2	33.5	2137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATACTGTTGGTTGGAATTT	NA	False	NA	NA	False	AATAAA	-25	NA	108185336	108198741	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_108185488_108189407_108189549_108195319
transcript_63508.nnic	chr4	-	826	3	NNC	ENSMUSG00000059816.6	novel	593	3	NA	NA	3237	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	22.5	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCATCATTACTTCTGGAA	NA	False	NA	-11	True	AATAAA	-6	NA	108237309	108224973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_108225239_108234543_108234684_108236888
transcript_63509.known	chr4	-	593	3	FSM	ENSMUSG00000059816.6	ENSMUST00000053157.7	593	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	6	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCATCATTACTTCTGGAA	NA	False	NA	-11	True	AATAAA	-6	NA	108240546	108224973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_108225239_108234543_108234684_108240358
transcript_6351.nnic	chr10	+	2029	7	NNC	ENSMUSG00000019996.18	novel	1008	7	NA	NA	-64	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_6	110.886453435736	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGATGTATCTGATTGG	NA	False	NA	NA	False	AATAAA	-18	NA	20024665	20127638	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_20024827_20106529_20106629_20109114_20109193_20121015_20121180_20122343_20122462_20126115_20126227_20126340
transcript_63519.known	chr4	-	331	2	FSM	ENSMUSG00000028597.12	ENSMUST00000184609.2	331	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGAAGACTTGTGACCGGG	NA	False	NA	NA	False	NA	NA	NA	108263921	108258045	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_108258195_108263739
transcript_63520.known	chr4	-	1289	3	FSM	ENSMUSG00000028597.12	ENSMUST00000030332.7	1289	3	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_2	16.5	1155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCAAATGTGTTTGCCATT	NA	False	NA	-11	True	AATAAA	-40	NA	108264158	108257586	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_108258195_108260397_108260660_108263739
transcript_63522.nic	chr4	+	677	2	ISM	ENSMUSG00000034610.15	ENSMUST00000106673.8	679	3	674	-295	90	295	3prime_fragment	FALSE	canonical	3	164	junction_1	0	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACACCCACTTCTCAGATGA	NA	False	NA	NA	False	AAAAAG	-29	NA	108317296	108336645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_108317398_108336069
transcript_63528.known	chr4	-	1516	10	FSM	ENSMUSG00000063800.6	ENSMUST00000079213.6	1516	10	0	0	0	0	multi-exon	TRUE	canonical	3	462	junction_7	44.4233283170614	1113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGGCTTTTTGTTTCTT	NA	False	NA	-8	True	ATTAAA	-20	NA	108436533	108422066	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_108422465_108424101_108424151_108424619_108424718_108424810_108424838_108425554_108425668_108427352_108427464_108430002_108430089_108432565_108432688_108434125_108434286_108436181
transcript_6353.known	chr10	+	1008	7	FSM	ENSMUSG00000019996.18	ENSMUST00000214823.2	1008	7	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_6	29.1018327028843	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGTATCACT	NA	False	NA	NA	False	NA	NA	NA	20024743	20133284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_20024827_20106529_20106629_20109114_20109193_20121015_20121180_20122343_20122462_20126115_20126227_20132929
transcript_63530.known	chr4	+	3014	17	FSM	ENSMUSG00000028587.19	ENSMUST00000102744.4	3014	17	0	0	0	0	multi-exon	FALSE	canonical	3	458	junction_7	60.5103296966724	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTGGTATGGTTTGGGGT	5272	False	NA	21	True	NA	NA	NA	108436650	108472030	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_108436773_108445872_108445979_108447849_108447975_108450489_108450669_108452525_108452842_108454326_108454676_108456519_108456622_108457127_108457282_108459152_108459251_108460584_108460687_108461161_108461334_108461696_108461805_108462724_108462875_108463434_108463555_108469247_108469418_108470265_108470354_108471477
transcript_63540.nnic	chr4	+	637	4	NNC	ENSMUSG00000028587.19	novel	3014	17	NA	NA	-80	-2380	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_3	245.112672504345	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTGTGGAGTCATTTTG	5161	False	NA	NA	False	NA	NA	NA	108436539	108450256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_108436773_108445872_108445979_108447849_108447975_108450083
transcript_63543.known	chr4	+	3303	25	FSM	ENSMUSG00000028582.15	ENSMUST00000030320.13	3303	25	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_8	22.4730934798829	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTATGTAGCCATTTTTA	3533	False	NA	13	True	NA	NA	NA	108477136	108491320	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_108477271_108478708_108478792_108480647_108480793_108481640_108481745_108482042_108482202_108482604_108482731_108482851_108483012_108483177_108483351_108483497_108483574_108483676_108483788_108483870_108484002_108484244_108484318_108484490_108484616_108485027_108485146_108485226_108485400_108485779_108485906_108486770_108486830_108486913_108487031_108487288_108487363_108487474_108487534_108487740_108487793_108488792_108488893_108489031_108489123_108490367_108490501_108490719
transcript_63548.known	chr4	-	624	7	FSM	ENSMUSG00000028568.17	ENSMUST00000102740.8	624	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	518.901403608303	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTGTTCCAAAGTTTTAC	NA	False	NA	NA	False	NA	NA	NA	108690751	108673987	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_108674084_108675381_108675442_108676332_108676535_108683296_108683411_108687714_108687781_108689609_108689649_108690704
transcript_6355.known	chr10	+	675	3	FSM	ENSMUSG00000019996.18	ENSMUST00000214231.2	675	3	0	0	0	0	multi-exon	FALSE	canonical	3	297	junction_2	12.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTTGGATGTCAGTAGAT	NA	False	NA	NA	False	AATAAA	-17	NA	20024740	20109604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_20024827_20106529_20106629_20109114
transcript_63552.known	chr4	-	3141	6	FSM	ENSMUSG00000028568.17	ENSMUST00000102742.11	3141	6	0	0	0	0	multi-exon	FALSE	canonical	3	1008	junction_1	73.428604780426	3654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTGTGTGGTTGTTAAA	NA	False	NA	-3	True	ATTAAA	-14	NA	108690811	108671491	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_108674084_108675381_108675442_108676332_108676535_108683296_108683411_108687714_108687781_108690704
transcript_6356.known	chr10	+	3831	18	FSM	ENSMUSG00000019996.18	ENSMUST00000116259.5	3831	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	71.9742360670778	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTTCCTGTGGTTTCACTT	NA	False	NA	15	True	AATAAA	-24	NA	20024729	20157336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_20024827_20106529_20106629_20109114_20109193_20121015_20121180_20122343_20122462_20126115_20126227_20132929_20133044_20137580_20137730_20142481_20142598_20142868_20143123_20145105_20145335_20149025_20149201_20149524_20149627_20149991_20150043_20150347_20150406_20151921_20152022_20153870_20154092_20155741
transcript_63561.known	chr4	+	1629	1	FSM	ENSMUSG00000073775.5	ENSMUST00000102738.4	1629	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	620	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGGTCTCTTGATGTA	NA	False	NA	9	True	AATAAA	-15	NA	108704981	108706610	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_108705000_108706600
transcript_63562.known	chr4	+	1359	7	FSM	ENSMUSG00000028567.9	ENSMUST00000030296.9	1359	7	0	0	0	0	multi-exon	FALSE	canonical	3	773	junction_6	37.6592913133296	6206	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGCCTTTGGTTACTGG	NA	False	NA	28	True	ATTAAA	-22	NA	108691797	108719324	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_108692054_108703147_108703209_108710365_108710419_108713344_108713419_108715121_108715192_108716471_108716556_108718563
transcript_63563.known	chr4	+	3327	5	FSM	ENSMUSG00000003411.11	ENSMUST00000106650.9	3327	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_4	5.5	416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGTGTGTATCTGCCTC	NA	False	NA	NA	False	AATAAA	-31	NA	108736259	108800521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_108736416_108747504_108747733_108781102_108781222_108786598_108786724_108797822
transcript_63566.known	chr4	+	1078	5	FSM	ENSMUSG00000003411.11	ENSMUST00000106651.9	1078	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	20.6458228220626	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACAACCTGCTTGTTTCCT	NA	False	NA	4	True	ATTAAA	-15	NA	108736396	108798382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_108736416_108747504_108747733_108781102_108781222_108786598_108786751_108797822
transcript_63567.known	chr4	+	1053	4	FSM	ENSMUSG00000003411.11	ENSMUST00000003502.4	1053	4	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	6.34209919681348	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCTGCTTGTTTCCTATC	NA	False	NA	7	True	ATTAAA	-18	NA	108747486	108798385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_108747733_108781102_108781222_108786598_108786724_108797822
transcript_63568.known	chr4	-	2871	24	FSM	ENSMUSG00000028559.18	ENSMUST00000030288.14	2871	24	0	0	0	0	multi-exon	FALSE	canonical	1	25	junction_18	119.667039647815	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATATGTTTCTTTCATT	NA	False	NA	-6	True	CATAAA	-20	NA	109059469	108918851	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108948857_108948897_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940_108991018_109013851_109013931_109029470_109029522_109059301
transcript_63569.known	chr4	-	2903	24	FSM	ENSMUSG00000028559.18	ENSMUST00000194478.6	2903	24	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_19	122.628536784985	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCAACCTGGCAGCCTTTT	NA	False	NA	34	True	TTTAAA	-38	NA	109059431	108918811	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108965077_108965147_108990940_108991018_109013851_109013931_109029470_109029522_109059301
transcript_63570.known	chr4	-	2408	23	FSM	ENSMUSG00000028559.18	ENSMUST00000162787.9	2408	23	0	0	0	0	multi-exon	FALSE	canonical	1	25	junction_17	111.643220473462	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCAGTTACAATTTTGACT	NA	False	NA	2	True	ATTAAA	-29	NA	109059469	108919275	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940_108991018_109013851_109013931_109029470_109029522_109059301
transcript_63575.known	chr4	-	3134	21	FSM	ENSMUSG00000028559.18	ENSMUST00000084366.13	3134	21	0	0	0	0	multi-exon	FALSE	canonical	1	25	junction_18	113.002776514562	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGACTGCAGTTTATTT	NA	False	NA	NA	False	CATAAA	-38	NA	108975219	108918341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108948857_108948897_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108975091
transcript_63579.known	chr4	-	2604	20	FSM	ENSMUSG00000028559.18	ENSMUST00000160271.8	2604	20	0	0	0	0	multi-exon	FALSE	canonical	1	25	junction_17	99.0531349615264	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTTCTTTCATTGTTTT	NA	False	NA	-1	True	CATAAA	-25	NA	108975233	108918846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108975091
transcript_6358.known	chr10	+	399	1	FSM	ENSMUSG00000111356.2	ENSMUST00000216127.2	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	166	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGACGGCTTATGTGCATGT	NA	False	NA	NA	False	AAGAAA	-6	NA	20084235	20084634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_20084200_20084600
transcript_63598.known	chr4	+	3784	33	FSM	ENSMUSG00000053510.13	ENSMUST00000106644.9	3784	33	0	0	0	0	multi-exon	FALSE	canonical	1	36	junction_3	173.040085222326	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAAAGACGTGTGTGCAT	NA	False	NA	39	True	AATAAA	-31	NA	108857966	108918358	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_108858362_108870706_108871038_108873848_108873983_108874823_108874894_108875035_108875118_108876154_108876309_108881400_108881475_108884632_108884729_108885947_108886071_108889646_108889705_108890486_108890561_108891877_108891948_108895171_108895250_108896854_108896976_108897052_108897112_108897381_108897437_108900572_108900678_108901744_108901869_108903791_108903879_108904793_108904914_108906263_108906316_108908035_108908187_108911093_108911222_108912122_108912286_108913486_108913519_108913706_108913846_108915455_108915504_108915778_108915832_108916181_108916266_108916968_108917060_108917265_108917383_108917965_108918056_108918132
transcript_63601.known	chr4	+	4311	31	FSM	ENSMUSG00000053510.13	ENSMUST00000065977.11	4311	31	0	0	0	0	multi-exon	FALSE	canonical	1	202	junction_11	90.2713440442511	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCTAACACTTGATTTTC	9940	False	NA	NA	False	AATAAA	-23	NA	108857851	108918974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_108858362_108870706_108871038_108875035_108875118_108876154_108876309_108881400_108881475_108884632_108884729_108885947_108886071_108889646_108889705_108890486_108890561_108891877_108891948_108895171_108895250_108896854_108896976_108897052_108897112_108897381_108897437_108900572_108900678_108901744_108901869_108903791_108903879_108904793_108904914_108906263_108906316_108908035_108908187_108911093_108911222_108912122_108912286_108913486_108913519_108913706_108913846_108915455_108915504_108915778_108915832_108916181_108916266_108916968_108917060_108917265_108917383_108917965_108918056_108918132
transcript_63604.known	chr4	+	4179	29	FSM	ENSMUSG00000053510.13	ENSMUST00000102736.9	4179	29	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	139.898300342697	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCTAACACTTGATTTTC	9940	False	NA	NA	False	AATAAA	-23	NA	108857851	108918974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_108858362_108870706_108871038_108875035_108875118_108876154_108876309_108881400_108881475_108884632_108884729_108885947_108886071_108891877_108891948_108895171_108895250_108896854_108896976_108897052_108897112_108897381_108897437_108900572_108900678_108901744_108901869_108903791_108903879_108904793_108904914_108906263_108906316_108908035_108908187_108911093_108911222_108912122_108912286_108913486_108913519_108913706_108913846_108915455_108915504_108915778_108915832_108916181_108916266_108916968_108917060_108917265_108917383_108917965_108918056_108918132
transcript_63615.nnic	chr4	+	1797	9	NNC	ENSMUSG00000028558.15	novel	1606	8	NA	NA	-16205	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_5	5.12195031213697	47	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGGGGTTTTTCTTTTGT	NA	False	NA	NA	False	TATAAA	-17	NA	109075476	109111542	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_109075716_109092970_109093073_109095974_109096179_109099353_109099449_109101248_109101459_109101885_109102000_109103344_109103489_109108523_109108617_109110946
transcript_63616.nnic	chr4	+	2015	9	NNC	ENSMUSG00000028558.15	novel	1606	8	NA	NA	-16197	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_5	5.12195031213697	45	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGCTTGTCTTATTTCTA	NA	False	NA	4	True	TTTAAA	-21	NA	109075484	109111768	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_109075716_109092970_109093073_109095974_109096179_109099353_109099449_109101248_109101459_109101885_109102000_109103344_109103489_109108523_109108617_109110946
transcript_63617.nnic	chr4	+	1334	7	NNC	ENSMUSG00000028558.15	novel	1606	8	NA	NA	-16315	-7416	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_5	5.40575824674229	28	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTCCTCTTTTAAGTGGA	NA	False	NA	NA	False	AATAAA	-24	NA	109075366	109103604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_109075716_109092970_109093073_109095974_109096179_109099353_109099449_109101248_109101459_109101885_109102000_109103344
transcript_63625.nic	chr4	+	991	7	ISM	ENSMUSG00000028552.14	ENSMUST00000175776.8	2802	25	-178	72150	-34	104	5prime_fragment	FALSE	canonical	3	150	junction_4	24.4176620957499	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTACATCTGTAAAGTCCAT	NA	False	NA	NA	False	AATAAA	-20	NA	109137430	109170512	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_109137642_109154383_109154426_109161947_109162038_109162873_109162922_109166321_109166418_109169500_109169567_109170074
transcript_63626.known	chr4	+	5190	25	FSM	ENSMUSG00000028552.14	ENSMUST00000102729.10	5190	25	0	0	0	0	multi-exon	TRUE	canonical	3	117	junction_16	21.9326225188771	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTATCTTGTCCTGTT	NA	False	NA	NA	False	AATAAA	-27	NA	109137464	109245014	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_109137642_109154383_109154426_109161947_109162038_109162873_109162922_109166321_109166418_109169500_109169567_109170074_109170201_109173041_109173102_109178324_109178415_109179266_109179413_109181264_109181422_109186888_109186975_109200480_109200554_109218359_109218522_109218866_109219065_109220375_109220577_109223320_109223438_109223614_109223706_109226141_109226178_109227738_109227876_109230419_109230490_109235461_109235539_109237063_109237227_109239981_109240164_109242515
transcript_63630.known	chr4	-	1955	4	FSM	ENSMUSG00000028557.11	ENSMUST00000064167.8	1955	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	102.557301056531	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAATGATGAGCAGAA	NA	False	NA	NA	False	NA	NA	NA	109334180	109310095	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_109311620_109314094_109314265_109333306_109333459_109334071
transcript_63631.known	chr4	-	4061	3	FSM	ENSMUSG00000028557.11	ENSMUST00000030284.10	4061	3	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_2	15	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTTAAACCAGAGTGGCC	NA	False	NA	-6	True	AGTAAA	-16	NA	109333872	109308294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_109311620_109314094_109314265_109333306
transcript_63632.known	chr4	+	4468	19	FSM	ENSMUSG00000010517.8	ENSMUST00000102724.5	4468	19	0	0	0	0	multi-exon	FALSE	canonical	3	1050	junction_10	116.73236245551	159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGAAGTTGAAAAGCCCTT	NA	False	NA	NA	False	ATTAAA	-16	NA	109533784	109821157	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_109534270_109567986_109568056_109577952_109578000_109584586_109584790_109593787_109593880_109600062_109600155_109614776_109614883_109651964_109652052_109687002_109687099_109697512_109697640_109698505_109698570_109699484_109699567_109719005_109719161_109740832_109740970_109748098_109748188_109782494_109782576_109783081_109783160_109792679_109792896_109818995
transcript_63633.nic	chr4	-	1513	7	NIC	ENSMUSG00000028546.18	novel	4149	7	NA	NA	-53	240	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	11.852097798374	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACAAAAAAATACCTTTGA	NA	False	NA	NA	False	NA	NA	NA	110209159	110063315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_110063899_110066936_110066976_110068622_110068849_110070324_110070479_110083741_110083846_110108477_110108719_110208993
transcript_63634.nic	chr4	-	1468	7	NIC	ENSMUSG00000028546.18	novel	3997	7	NA	NA	-53	237	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	10.286182749473	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAACAAAAAAATACCTT	NA	False	NA	NA	False	NA	NA	NA	110209159	110063318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_110063857_110066936_110066976_110068622_110068849_110070324_110070479_110083741_110083846_110108477_110108719_110208993
transcript_63637.known	chr4	-	3761	6	FSM	ENSMUSG00000028546.18	ENSMUST00000106603.9	3761	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	6.48074069840786	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGCTTCCCAAATTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	110209106	110060933	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_110063857_110068622_110068849_110070324_110070479_110083741_110083846_110108477_110108719_110208993
transcript_63638.known	chr4	+	1448	6	FSM	ENSMUSG00000028545.14	ENSMUST00000129760.8	1448	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	5.19230199429887	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATAAGGCCTTTGCATTT	NA	False	NA	1	True	AATAAA	-13	NA	111272284	111317117	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_111272598_111288213_111288348_111290283_111290751_111305702_111305852_111311281_111311496_111316946
transcript_63639.known	chr4	+	1826	6	FSM	ENSMUSG00000028545.14	ENSMUST00000030274.7	1826	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	5.19230199429887	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGTTGTTCTCATTTTTT	NA	False	NA	NA	False	AATAAA	-22	NA	111272202	111317495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_111272598_111288213_111288348_111290365_111290751_111305702_111305852_111311281_111311496_111316946
transcript_63640.known	chr4	+	2239	13	FSM	ENSMUSG00000034401.17	ENSMUST00000084354.4	2239	13	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_11	28.7691964897643	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATCCACACTTTAAAGGGA	NA	False	NA	62	True	NA	NA	NA	111577401	111686381	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_111577455_111603337_111603476_111604951_111605001_111624859_111624902_111625912_111626038_111631995_111632077_111636196_111636491_111637951_111638040_111641999_111642041_111656266_111656452_111663127_111663180_111679937_111680030_111685382
transcript_63642.known	chr4	+	2466	13	FSM	ENSMUSG00000034401.17	ENSMUST00000038868.14	2466	13	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_2	15.2103309190388	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGGTATTTTCATAGGT	NA	False	NA	20	True	AATAAA	-35	NA	111577180	111686339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_111577455_111603337_111603476_111604951_111605001_111624859_111624902_111625912_111626038_111631995_111632077_111636196_111636491_111637951_111638040_111641999_111642041_111656266_111656452_111663127_111663228_111679937_111680030_111685382
transcript_63649.nic	chr4	+	624	2	ISM	ENSMUSG00000034401.17	ENSMUST00000070513.13	478	4	-27	22269	-2	-22269	5prime_fragment	FALSE	canonical	3	118	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAGGGTGAGTTC	NA	False	NA	NA	False	NA	NA	NA	111577178	111603685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_111577455_111603337
transcript_6365.known	chr10	+	3142	13	FSM	ENSMUSG00000037608.17	ENSMUST00000185800.7	3142	13	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_3	210.967743716638	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCATATTTGTAACTATCAA	2858	False	NA	9	True	AATAAA	-17	NA	20188282	20216009	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198714_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20209137_20209319_20210244_20210392_20215454_20215668_20215797
transcript_63656.known	chr4	-	3170	6	FSM	ENSMUSG00000028719.9	ENSMUST00000030491.9	3170	6	0	0	0	0	multi-exon	FALSE	canonical	3	519	junction_1	39.0302446828098	272	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTGGTTCTGATATCTG	NA	False	NA	NA	False	AATAAA	-25	NA	114844438	114816532	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_114818953_114820261_114820359_114820552_114820630_114822079_114822233_114826414_114826562_114844162
transcript_63659.known	chr4	+	887	5	FSM	ENSMUSG00000028716.16	ENSMUST00000106548.9	887	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.87082869338697	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTCACGGGCCTATTTCT	NA	False	NA	NA	False	NA	NA	NA	114945919	114951096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_114946004_114946235_114946410_114948338_114948448_114950117_114950214_114950672
transcript_63665.known	chr4	+	2792	11	FSM	ENSMUSG00000034210.15	ENSMUST00000106525.9	2792	11	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_6	11.0657128102983	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTCAGAATATGTCTTTT	NA	False	NA	141	True	NA	NA	NA	115594940	115631632	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_115596038_115597588_115597738_115603654_115603801_115610117_115610217_115613629_115613741_115616005_115616093_115617066_115617259_115619414_115619496_115621768_115621881_115623589_115623710_115631034
transcript_63669.nic	chr4	+	2274	2	ISM	ENSMUSG00000034210.15	ENSMUST00000132306.2	2368	4	-53	12381	-17	-12381	5prime_fragment	FALSE	canonical	3	178	junction_1	0	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGCTTAGAGAAGTTAAGT	NA	False	NA	NA	False	NA	NA	NA	115594923	115598748	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_115596038_115597588
transcript_63670.known	chr4	-	802	2	FSM	ENSMUSG00000044556.4	ENSMUST00000106521.2	802	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGCTCCTAGAAGGGC	9504	False	NA	NA	False	AATAAA	-18	NA	115638215	115637030	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_115637801_115638183
transcript_63675.known	chr4	+	2160	9	FSM	ENSMUSG00000028710.19	ENSMUST00000239030.2	2160	9	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_5	26.518566609076	573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCCCACACCCCCACACAC	NA	False	NA	NA	False	NA	NA	NA	115642180	115669511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_115642502_115645458_115645568_115647777_115647829_115648419_115648483_115652600_115652652_115653951_115654000_115655162_115655259_115657514_115657623_115668198
transcript_63677.nic	chr4	+	1077	8	ISM	ENSMUSG00000028710.19	ENSMUST00000239030.2	2160	9	-21	11680	-21	2628	5prime_fragment	FALSE	canonical	3	354	junction_5	26.2701817462231	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTTCAGTGTACTTTT	NA	False	NA	NA	False	AATAAA	-21	NA	115642159	115657831	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_115642502_115645458_115645568_115647777_115647829_115648419_115648483_115652600_115652652_115653951_115654000_115655162_115655259_115657514
transcript_6368.known	chr10	+	5307	12	FSM	ENSMUSG00000037608.17	ENSMUST00000092678.10	5307	12	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_10	195.138687701892	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGCTGGTCTCTGTTTGCCT	2790	False	NA	16	True	AATAAA	-17	NA	20188214	20218247	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20209137_20209319_20215454_20215668_20215797
transcript_63681.known	chr4	+	2884	4	FSM	ENSMUSG00000028709.4	ENSMUST00000030477.4	2884	4	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	9.42809041582063	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGGTGGGAAGTGGTGT	NA	False	NA	NA	False	AATAAA	-19	NA	115685288	115693382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_115685439_115688419_115688887_115690829_115691033_115691318
transcript_63690.known	chr4	+	2552	14	FSM	ENSMUSG00000028708.17	ENSMUST00000106513.10	2552	14	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	55.5404857930697	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGCAGCCTTGGTGGT	NA	False	NA	10	True	AATAAA	-16	NA	115696429	115736447	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_115696479_115702818_115702863_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115735146
transcript_63694.known	chr4	+	2543	13	FSM	ENSMUSG00000028708.17	ENSMUST00000019677.12	2543	13	0	0	0	0	multi-exon	TRUE	canonical	3	99	junction_1	27.9607860325055	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGCAGCCTTGGTGGT	NA	False	NA	10	True	AATAAA	-16	NA	115696394	115736447	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115735146
transcript_63695.nnic	chr4	+	1546	13	NNC	ENSMUSG00000028708.17	novel	2543	13	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_12	47.0592858943789	41	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTGGCAGCCTTGGTG	NA	False	NA	8	True	AATAAA	-14	NA	115696394	115736445	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115736141
transcript_63698.nnic	chr4	+	2497	13	NNC	ENSMUSG00000028708.17	novel	2543	13	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	42.5606593255112	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGCAGCCTTGGTGGT	NA	False	NA	10	True	AATAAA	-16	NA	115696400	115736447	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_115696439_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115735146
transcript_63712.known	chr4	+	1377	9	FSM	ENSMUSG00000028708.17	ENSMUST00000153766.8	1377	9	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	26.830195209875	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATGCTTATAGCGTGTC	NA	False	NA	NA	False	TTTAAA	-12	NA	115696419	115731067	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407
transcript_63717.nic	chr4	+	1586	8	NIC	ENSMUSG00000028708.17	novel	2543	13	NA	NA	0	868	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	62.8051733212987	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATCATATATATATATATA	NA	False	NA	NA	False	NA	NA	NA	115696394	115725392	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115724492
transcript_63718.nic	chr4	+	718	8	NIC	ENSMUSG00000028708.17	novel	2543	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	62.8051733212987	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GCAAAAAAAAAAAAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	115696394	115724524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115724492
transcript_63724.nic	chr4	+	703	6	ISM	ENSMUSG00000028708.17	ENSMUST00000153766.8	1377	9	-25	9136	0	132	5prime_fragment	FALSE	canonical	3	99	junction_1	32.5613267542955	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCCTTGGTTTGGGAGAA	NA	False	NA	NA	False	AATAAA	-21	NA	115696394	115721931	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735
transcript_63726.known	chr4	+	659	8	FSM	ENSMUSG00000028708.17	ENSMUST00000130819.8	659	8	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	72.8372521867928	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCCACTGCCCTTGACTT	NA	False	NA	NA	False	NA	NA	NA	115696431	115723729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_115696479_115702818_115702863_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658
transcript_63727.known	chr4	+	1605	2	FSM	ENSMUSG00000034185.10	ENSMUST00000132221.3	1605	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACTCTGTGATGTGCAGG	9431	False	NA	NA	False	AATAAA	-15	NA	115747861	115756424	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_115748159_115755116
transcript_63728.known	chr4	-	4017	5	FSM	ENSMUSG00000028707.16	ENSMUST00000124071.9	4017	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	0.707106781186548	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTGATCCATCTTCATT	NA	False	NA	NA	False	AATAAA	-19	NA	115797123	115772315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_115775603_115777170_115777514_115777729_115777909_115780845_115781012_115797081
transcript_63729.known	chr4	-	3827	15	FSM	ENSMUSG00000034171.14	ENSMUST00000049095.6	3827	15	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	8.32257809350258	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATAAGAGTGAATAAATAAT	NA	False	NA	NA	False	NA	NA	NA	115875123	115853865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_115855813_115856017_115856164_115856695_115856805_115857245_115857286_115857983_115858025_115858300_115858401_115859654_115859753_115860173_115860300_115861551_115861677_115861910_115861952_115862196_115862404_115862497_115862632_115862783_115862919_115865376_115865491_115874659
transcript_63733.known	chr4	-	2439	6	FSM	ENSMUSG00000028706.15	ENSMUST00000030475.3	2439	6	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_2	15.8417170786503	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCTTTCTTGAGATTTG	NA	False	NA	NA	False	ATTAAA	-38	NA	115911073	115890038	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_115891509_115892948_115893074_115897265_115897427_115901881_115902037_115905526_115905862_115910880
transcript_63739.known	chr4	-	547	4	FSM	ENSMUSG00000063882.13	ENSMUST00000078676.6	547	4	0	0	0	0	multi-exon	FALSE	canonical	3	1017	junction_2	25.9272486435067	25857	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGTCCTTCCTTTGCC	7657	False	NA	-7	True	AATAAA	-17	NA	115932268	115924161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_115924370_115927059_115927222_115927933_115927955_115932112
transcript_63740.known	chr4	-	579	4	FSM	ENSMUSG00000063882.13	ENSMUST00000134760.2	579	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	488.184618993903	963	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGTCCTTCCTTTGCC	7694	False	NA	-7	True	AATAAA	-17	NA	115932231	115924161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_115924370_115927059_115927222_115927864_115927955_115932112
transcript_63741.known	chr4	-	402	4	FSM	ENSMUSG00000063882.13	ENSMUST00000050580.11	402	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	490.539159157214	450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGTCCTTCCTTTGCC	7697	False	NA	-7	True	AATAAA	-17	NA	115932228	115924161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_115924370_115927059_115927117_115927933_115927955_115932112
transcript_63742.known	chr4	-	423	2	FSM	ENSMUSG00000063882.13	ENSMUST00000142468.2	423	2	0	0	0	0	multi-exon	FALSE	canonical	3	1072	junction_1	0	553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTTTGTCCTTCCTTTGC	NA	False	NA	-8	True	AATAAA	-16	NA	115927275	115924162	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_115924370_115927059
transcript_63745.known	chr4	-	2780	19	FSM	ENSMUSG00000028702.16	ENSMUST00000102705.10	2780	19	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_18	87.8901706606913	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCTGGTGTTAGGCATTC	NA	False	NA	4	True	NA	NA	NA	115980882	115954112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980346_115980675
transcript_63746.nnic	chr4	-	2723	19	NNC	ENSMUSG00000028702.16	novel	2780	19	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	3	105	junction_18	100.421042627873	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAAGGCATGAAAGGGA	NA	False	NA	-55	True	AAGAAA	-38	NA	115980906	115954171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980346_115980697
transcript_63747.nnic	chr4	-	2956	19	NNC	ENSMUSG00000028702.16	novel	3025	18	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	1	19	junction_18	118.034272591366	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAAGGCATGAAAGGGA	NA	False	NA	-55	True	AAGAAA	-38	NA	115980884	115954171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980514_115980610
transcript_63748.nnic	chr4	-	2902	19	NNC	ENSMUSG00000028702.16	novel	3025	18	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	3	105	junction_18	100.421042627873	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAAGGCATGAAAGGGA	NA	False	NA	-55	True	AAGAAA	-38	NA	115980895	115954171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980514_115980675
transcript_63757.known	chr4	+	3065	10	FSM	ENSMUSG00000028703.15	ENSMUST00000030471.9	3065	10	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_3	24.5573151707401	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCCCTTCTTGATGATT	NA	False	NA	9	True	AATAAA	-17	NA	115932465	115954240	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_115932805_115936585_115936673_115937745_115937817_115945643_115946767_115950068_115950330_115952073_115952239_115952329_115952429_115952988_115953112_115953339_115953416_115953519
transcript_63763.known	chr4	-	3025	18	FSM	ENSMUSG00000028702.16	ENSMUST00000102704.4	3025	18	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_11	50.1315225199974	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAAGGCATGAAAGGGA	NA	False	NA	-55	True	AAGAAA	-38	NA	115980856	115954171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258
transcript_63764.known	chr4	+	2719	22	FSM	ENSMUSG00000028700.15	ENSMUST00000106498.8	2719	22	0	0	0	0	multi-exon	TRUE	canonical	3	321	junction_9	36.7984644262092	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGGGTGTATTTTGTAATA	NA	False	NA	6	True	ATTAAA	-16	NA	116007714	116017041	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_116007815_116008261_116008441_116009016_116009132_116009273_116009393_116009905_116009972_116010059_116010174_116010747_116010866_116011038_116011138_116011288_116011417_116011738_116011810_116012027_116012104_116012259_116012344_116012425_116012468_116012656_116012716_116012925_116012999_116013082_116013212_116013292_116013419_116015089_116015155_116015348_116015394_116015619_116015756_116016179_116016290_116016376
transcript_63765.known	chr4	+	557	3	FSM	ENSMUSG00000028700.15	ENSMUST00000144311.2	557	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	0.5	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGTTCATGCATATAACT	NA	False	NA	NA	False	AATGAA	-36	NA	115981036	115996047	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_115981314_115994890_115995026_115995902
transcript_63766.nnic	chr4	+	661	3	NNC	ENSMUSG00000028700.15	novel	557	3	NA	NA	-56	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	2.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGTTCATGCATATAACT	NA	False	NA	NA	False	AATGAA	-36	NA	115980980	115996047	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_115981314_115994842_115995026_115995902
transcript_63768.known	chr4	-	5742	2	FSM	ENSMUSG00000028701.5	ENSMUST00000030469.5	5742	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATGCTTAAGTGTCTTCC	NA	False	NA	NA	False	NA	NA	NA	116001806	115989602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_115995032_116001493
transcript_63770.known	chr4	-	1985	8	FSM	ENSMUSG00000028699.10	ENSMUST00000030465.10	1985	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.48461497791618	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTGTTGTTTTTGCTT	NA	False	NA	NA	False	NA	NA	NA	116024797	116019065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_116020233_116020503_116020588_116020824_116020978_116021058_116021158_116021263_116021339_116021515_116021723_116024204_116024270_116024662
transcript_63772.known	chr4	+	385	2	FSM	ENSMUSG00000078593.3	ENSMUST00000106492.3	385	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTCTTACCCCATTCTG	NA	False	NA	NA	False	AATACA	-14	NA	116030568	116031487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_116030827_116031360
transcript_63773.known	chr4	+	5257	10	FSM	ENSMUSG00000028698.14	ENSMUST00000030464.14	5257	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_9	3.32591767713239	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTTTTTGGTTTTCTTGG	3291	False	NA	NA	False	AATAAA	-15	NA	116078857	116160253	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_116079611_116113364_116113474_116116741_116116841_116127984_116128166_116129935_116130062_116143252_116143396_116144019_116144197_116148871_116148947_116149293_116149465_116156830
transcript_63778.known	chr4	+	2115	9	FSM	ENSMUSG00000028696.13	ENSMUST00000030461.5	2115	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	27.3698625316241	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAACAGTACAAATGGTATT	NA	False	NA	NA	False	AATAAA	-27	NA	116364748	116395440	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_116364848_116367726_116368061_116372264_116372697_116377855_116378012_116381382_116381551_116386867_116387006_116387609_116387733_116389754_116389976_116394996
transcript_63784.nic	chr4	+	1339	6	ISM	ENSMUSG00000028696.13	ENSMUST00000106479.8	2118	9	52	8374	49	-8374	5prime_fragment	FALSE	canonical	3	66	junction_1	8.66256313108309	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATTGTAGACATGTTCATT	NA	False	NA	NA	False	ATTAAA	-15	NA	116364797	116387058	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_116364848_116367718_116368061_116372264_116372697_116377855_116378012_116381382_116381551_116386867
transcript_63785.nic	chr4	+	1404	5	ISM	ENSMUSG00000028696.13	ENSMUST00000106479.8	2118	9	-39	13717	-39	-13717	5prime_fragment	FALSE	canonical	3	66	junction_1	9.20258115965298	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACCATCTCTTTGAACTTA	NA	False	NA	NA	False	AATAAA	-25	NA	116364706	116381715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_116364848_116367718_116368061_116372264_116372697_116377855_116378012_116381382
transcript_63787.nic	chr4	+	459	2	ISM	ENSMUSG00000028696.13	ENSMUST00000106479.8	2118	9	40	27317	37	-27317	5prime_fragment	FALSE	canonical	3	66	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATCTAATCTTATTTATT	NA	False	NA	NA	False	NA	NA	NA	116364785	116368115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_116364848_116367718
transcript_63789.known	chr4	-	1962	5	FSM	ENSMUSG00000055900.15	ENSMUST00000106478.9	1962	5	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	29.1150734156725	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGAGTTGCCTTGGTCAT	NA	False	NA	-108	True	NA	NA	NA	116413133	116408829	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_116409321_116409518_116409542_116409678_116410927_116411964_116412101_116413069
transcript_63792.nic	chr4	-	2240	4	NIC	ENSMUSG00000055900.15	novel	1962	5	NA	NA	-39	102	intron_retention	TRUE	non_canonical	0	0	junction_1	27.6204433144888	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGGATTGTCTAAGCCT	NA	False	NA	-6	True	AATAAA	-27	NA	116413172	116408727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_116409321_116409518_116410927_116411964_116412101_116413069
transcript_63793.nnic	chr4	-	944	4	NNC	ENSMUSG00000055900.15	novel	1962	5	NA	NA	-39	102	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	27.6204433144888	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGGATTGTCTAAGCCT	NA	False	NA	-6	True	AATAAA	-27	NA	116413172	116408727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_116409321_116410814_116410927_116411964_116412101_116413069
transcript_63794.nnic	chr4	-	1777	4	NNC	ENSMUSG00000055900.15	novel	1962	5	NA	NA	-39	102	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	27.6204433144888	47	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGGATTGTCTAAGCCT	NA	False	NA	-6	True	AATAAA	-27	NA	116413172	116408727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_116409428_116410088_116410927_116411964_116412101_116413069
transcript_63796.nnic	chr4	-	1189	4	NNC	ENSMUSG00000055900.15	novel	1962	5	NA	NA	-39	-214	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	27.6204433144888	61	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTTCAAAGTAACTTATT	NA	False	NA	NA	False	NA	NA	NA	116413172	116409315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_116409428_116410088_116410927_116411964_116412101_116413069
transcript_63798.known	chr4	-	974	3	FSM	ENSMUSG00000055900.15	ENSMUST00000069674.6	974	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_2	6.5	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTTTTTTTTTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	116413132	116410151	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_116410927_116411964_116412101_116413069
transcript_63803.known	chr4	+	3588	12	FSM	ENSMUSG00000034042.17	ENSMUST00000030460.15	3588	12	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_2	28.7128847743677	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTTTTTACTGAAGGAA	NA	False	NA	12	True	AATAAA	-18	NA	116414854	116451079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_116415026_116426360_116427379_116428067_116428181_116430590_116430721_116431533_116431812_116436443_116436517_116438446_116438641_116444567_116444709_116445775_116445941_116447362_116447488_116448425_116448529_116450002
transcript_63813.nnic	chr4	+	2261	6	NNC	ENSMUSG00000034042.17	novel	3588	12	NA	NA	-17	-137	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	120.773507028653	89	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGTGGATTCTTTTTTTA	NA	False	NA	12	True	AATATA	-16	NA	116414837	116450942	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_116415026_116426360_116427379_116428067_116428181_116430590_116430721_116431533_116431760_116450356
transcript_63816.nic	chr4	+	1685	5	ISM	ENSMUSG00000034042.17	ENSMUST00000030460.15	3588	12	-17	19310	-17	-6870	5prime_fragment	FALSE	canonical	3	268	junction_2	24.9136007032304	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGGATAAAGTAGAAAAGTT	NA	False	NA	NA	False	AAGAAA	-33	NA	116414837	116431769	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_116415026_116426360_116427379_116428067_116428181_116430590_116430721_116431533
transcript_63820.nic	chr4	+	364	2	ISM	ENSMUSG00000034042.17	ENSMUST00000030460.15	3588	12	-17	24543	-17	-12103	5prime_fragment	FALSE	canonical	3	321	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCATTTTGGAATTCTCTT	NA	False	NA	NA	False	AATACA	-21	NA	116414837	116426536	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_116415026_116426360
transcript_63822.known	chr4	-	2520	16	FSM	ENSMUSG00000028693.16	ENSMUST00000030456.14	2520	16	0	0	0	0	multi-exon	TRUE	canonical	3	22	junction_15	334.076930594669	952	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCTTTGATGGCTTT	NA	False	NA	-7	True	AATAAA	-15	NA	116485138	116458805	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528_116484627_116485086
transcript_63828.known	chr4	-	2118	14	FSM	ENSMUSG00000028693.16	ENSMUST00000030457.12	2118	14	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_9	345.747385294336	652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCCTTGTTCTGGAATT	NA	False	NA	NA	False	AATAAA	-16	NA	116484694	116458248	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
transcript_6383.known	chr10	+	1991	7	FSM	ENSMUSG00000019992.9	ENSMUST00000169712.3	1991	7	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_5	12.6150263134442	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGTTGAGTATTTAACAT	NA	False	NA	7	True	AATAAA	-14	NA	20223515	20237050	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_20223670_20224080_20224182_20228569_20228675_20229112_20229226_20229775_20230012_20233000_20233513_20236280
transcript_63840.known	chr4	-	1420	9	FSM	ENSMUSG00000028692.15	ENSMUST00000030455.15	1420	9	0	0	0	0	multi-exon	FALSE	canonical	3	1447	junction_3	104.145331148352	10773	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTTGTGTGCCTGACTTA	NA	False	NA	-1	True	AATAAA	-15	NA	116508877	116493706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_116493867_116494958_116495046_116495172_116495246_116496157_116496358_116497006_116497203_116498187_116498340_116499054_116499175_116502700_116502791_116508535
transcript_63841.known	chr4	-	2227	8	FSM	ENSMUSG00000028692.15	ENSMUST00000128010.2	2227	8	0	0	0	0	multi-exon	FALSE	canonical	3	1447	junction_2	89.468042407582	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACGTTGTGTGCCTGACTT	NA	False	NA	-2	True	AATAAA	-14	NA	116508593	116493707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_116495046_116495172_116495246_116496157_116496358_116497006_116497203_116498187_116498340_116499054_116499175_116502700_116502791_116508535
transcript_63852.known	chr4	+	877	6	FSM	ENSMUSG00000028691.13	ENSMUST00000106470.8	877	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	9266.17147693696	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCCAGGCAGCATTGAGCA	NA	False	NA	NA	False	NA	NA	NA	116543083	116556469	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_116543334_116544603_116544721_116548972_116549127_116550079_116550203_116550913_116551045_116556367
transcript_63854.known	chr4	+	2294	6	FSM	ENSMUSG00000028691.13	ENSMUST00000135573.8	2294	6	0	0	0	0	multi-exon	FALSE	canonical	3	22651	junction_3	699.316637868713	21433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGAAGTTCATTGGGTATC	NA	False	NA	NA	False	AATAAA	-15	NA	116542740	116558019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_116542858_116544603_116544721_116548972_116549127_116550079_116550203_116550913_116551045_116556367
transcript_63859.known	chr4	-	2106	4	FSM	ENSMUSG00000028690.5	ENSMUST00000030453.5	2106	4	0	0	0	0	multi-exon	TRUE	canonical	3	184	junction_2	7.07106781186548	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATCATGTTTCCTTGAAC	NA	False	NA	NA	False	ACTAAA	-25	NA	116565603	116559475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_116561065_116561703_116561857_116563077_116563273_116565434
transcript_6386.known	chr10	+	1577	7	FSM	ENSMUSG00000019992.9	ENSMUST00000213374.2	1577	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	66.0353440716914	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTATGGCTTCCTACTG	NA	False	NA	NA	False	AATACA	-19	NA	20223752	20236641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_20223902_20224080_20224182_20228569_20228675_20229112_20229226_20229775_20230012_20233000_20233513_20236280
transcript_63870.known	chr4	+	3033	11	FSM	ENSMUSG00000033985.18	ENSMUST00000045542.13	3033	11	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_7	8.01810451416044	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTGAAATATGATTTTGC	NA	False	NA	3	True	ATTAAA	-16	NA	116578144	116661439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_116578454_116598812_116599116_116608301_116608424_116628996_116629046_116649284_116649432_116657729_116657813_116658356_116658442_116658645_116658730_116658916_116659004_116659420_116659539_116659793
transcript_63876.known	chr4	+	1112	10	FSM	ENSMUSG00000028689.15	ENSMUST00000106462.9	1112	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	24.3680624821877	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTTCTCTGTAAATCTT	5618	False	NA	15	True	AATAAA	-19	NA	116565767	116572300	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_116565854_116566458_116566471_116566634_116566817_116566920_116567003_116567297_116567482_116568507_116568576_116569568_116569637_116569919_116570024_116571284_116571347_116572036
transcript_63894.nnic	chr4	-	2018	8	NNC	ENSMUSG00000028688.14	novel	2090	8	NA	NA	235	0	intron_retention	FALSE	canonical	2	4	junction_7	42.0500188065672	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGGTTATTTCTTATC	2266	False	NA	0	True	TTTAAA	-42	NA	116664510	116661198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116663957_116664409
transcript_63896.nic	chr4	-	2104	8	NIC	ENSMUSG00000028688.14	novel	2090	8	NA	NA	-3	0	intron_retention	FALSE	canonical	2	10	junction_7	40.0209129004794	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGGTTATTTCTTATC	1970	False	NA	0	True	TTTAAA	-42	NA	116664806	116661198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116664002_116664664
transcript_63899.nnic	chr4	+	930	7	NIC	ENSMUSG00000028689.15	novel	1112	10	NA	NA	10	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	32.3200144389407	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGATGTGTTCTCTGTAAA	5628	False	NA	11	True	AATAAA	-15	NA	116565777	116572296	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_116565854_116566458_116566471_116566634_116566817_116566920_116567003_116567297_116567482_116571212_116571347_116572036
transcript_63908.known	chr4	+	1213	10	FSM	ENSMUSG00000028689.15	ENSMUST00000106464.3	1213	10	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	20.3239201040316	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTTCTCTGTAAATCTT	5977	False	NA	15	True	AATAAA	-19	NA	116566126	116572300	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_116566292_116566436_116566471_116566634_116566817_116566920_116567003_116567297_116567482_116568507_116568576_116569568_116569637_116569919_116570024_116571284_116571347_116572036
transcript_63909.known	chr4	-	1209	9	FSM	ENSMUSG00000028688.14	ENSMUST00000106455.8	1209	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	50.3722083593721	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGCTGGTGATCTTACCT	2031	False	NA	NA	False	GATAAA	-31	NA	116664745	116651506	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_116651706_116656339_116656406_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116663957_116664664
transcript_63910.known	chr4	-	2090	8	FSM	ENSMUSG00000028688.14	ENSMUST00000030451.10	2090	8	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_2	11.8252583351856	526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGGTTATTTCTTATC	1939	False	NA	0	True	TTTAAA	-42	NA	116664837	116661198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116663957_116664664
transcript_63911.nnic	chr4	+	1848	18	NNC	ENSMUSG00000028687.18	novel	1654	16	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	65.0266913523616	119	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTTGGAGAACTTTCTG	NA	False	NA	26	True	AATAAA	-16	NA	116664911	116676628	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_116664969_116667792_116667886_116668045_116668139_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116676451
transcript_63913.nic	chr4	+	1752	17	NIC	ENSMUSG00000028687.18	novel	1654	16	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	43.6183286446191	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTTGGAGAACTTTCTG	NA	False	NA	26	True	AATAAA	-16	NA	116664914	116676628	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_116664969_116668045_116668139_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116676451
transcript_63915.nnic	chr4	+	1684	16	NNC	ENSMUSG00000028687.18	novel	1654	16	NA	NA	-2	2	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_15	52.9651457721648	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTGTGTGTGTATAT	NA	False	NA	NA	False	AAGAAA	-23	NA	116664917	116675971	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_116664969_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116675766
transcript_63916.known	chr4	+	1654	16	FSM	ENSMUSG00000028687.18	ENSMUST00000102699.8	1654	16	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_1	29.5893374188894	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTTGGAGAACTTTCTG	NA	False	NA	26	True	AATAAA	-16	NA	116664919	116676628	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_116664969_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116676451
transcript_63935.known	chr4	+	1483	14	FSM	ENSMUSG00000028687.18	ENSMUST00000155346.8	1483	14	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	50.6509110766964	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGATTCCCTACCCAAAAT	3020	False	NA	-22	True	NA	NA	NA	116671515	116676580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_116671634_116672760_116672910_116672995_116673036_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116676451
transcript_63936.known	chr4	+	689	3	FSM	ENSMUSG00000028687.18	ENSMUST00000135449.2	689	3	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_2	11	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTTTCTGGGCTTTCTC	6399	False	NA	35	True	AATAAA	-25	NA	116674894	116676637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_116675003_116675084_116675480_116676451
transcript_63937.known	chr4	-	1804	1	FSM	ENSMUSG00000043155.5	ENSMUST00000055436.5	1804	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	403	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGAGCCTCTGTGTCTT	7088	False	NA	-6	True	AATAAA	-26	NA	116678904	116677100	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_116677100_116678900
transcript_63939.known	chr4	+	636	2	FSM	ENSMUSG00000086417.2	ENSMUST00000151670.2	636	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTGTGTATAGAGTGCT	3311	False	NA	NA	False	AGTAAA	-16	NA	116682099	116687800	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_116682180_116687244
transcript_6394.known	chr10	+	2733	18	FSM	ENSMUSG00000019977.17	ENSMUST00000219915.2	2733	18	0	0	0	0	multi-exon	FALSE	canonical	3	828	junction_14	97.3053197904183	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTATTGCAAAAATGTGT	NA	False	NA	12	True	AATAAA	-14	NA	21171931	21244782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
transcript_63940.nnic	chr4	-	531	3	Genic_Genomic	ENSMUSG00000075390.6	novel	315	1	NA	NA	-451	51	multi-exon	FALSE	canonical	0	0	junction_2	0.5	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTTCTTAGTTTTCTTAT	NA	False	NA	NA	False	AATAAA	-33	NA	116697869	116697052	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr4_-_116697421_116697562_116697623_116697766
transcript_63941.nnic	chr4	-	614	3	Genic_Genomic	ENSMUSG00000075390.6	novel	315	1	NA	NA	-481	51	multi-exon	TRUE	canonical	1	1	junction_1	0	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTTCTTAGTTTTCTTAT	NA	False	NA	NA	False	AATAAA	-33	NA	116697899	116697052	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr4_-_116697421_116697562_116697676_116697766
transcript_63946.known	chr4	-	1489	10	FSM	ENSMUSG00000028684.15	ENSMUST00000030446.15	1489	10	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_9	15.6331398550769	1815	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCCGGCTCCTTTGTTCCT	NA	False	NA	-8	True	NA	NA	NA	116851610	116847161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_116847646_116848428_116848496_116848589_116848691_116848817_116848956_116849760_116849923_116850022_116850221_116850444_116850508_116850584_116850665_116850781_116850895_116851527
transcript_63947.known	chr4	-	351	3	FSM	ENSMUSG00000028684.15	ENSMUST00000139816.2	351	3	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_2	16	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTTCTCTGACATCCTT	NA	False	NA	NA	False	NA	NA	NA	116851577	116850476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_116850665_116850781_116850895_116851527
transcript_63948.known	chr4	+	4583	21	FSM	ENSMUSG00000046861.10	ENSMUST00000050067.10	4583	21	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_7	8.68964901477614	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTATATATATGGATGTCTA	NA	False	NA	NA	False	ATTAAA	-19	NA	116852513	116862474	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_116852969_116853143_116853305_116853557_116853651_116853728_116853865_116854110_116854227_116854314_116854429_116854544_116854628_116855573_116855740_116855940_116856023_116856774_116856958_116857085_116857139_116857285_116857351_116857443_116857548_116857793_116857914_116858018_116858109_116859312_116859520_116859706_116859837_116859933_116860009_116860130_116860213_116860315_116860388_116860478
transcript_63949.nic	chr4	+	1190	4	ISM	ENSMUSG00000046861.10	ENSMUST00000050067.10	4583	21	7358	1097	-181	731	3prime_fragment	FALSE	canonical	3	63	junction_1	3.2659863237109	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTAGAATGTGCTTTT	NA	False	NA	5	True	AATAAA	-13	NA	116859871	116861377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_116860009_116860130_116860213_116860315_116860388_116860478
transcript_63953.known	chr4	+	1555	12	FSM	ENSMUSG00000028683.15	ENSMUST00000106448.9	1555	12	0	0	0	0	multi-exon	TRUE	canonical	3	567	junction_7	49.9305302519377	2976	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGGCTCAGTGGTAGAG	NA	False	NA	20	True	AATAAA	-20	NA	116876598	116944049	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_116876674_116879351_116879510_116885607_116885754_116901632_116901793_116909920_116910033_116915960_116916051_116922537_116922666_116923570_116923762_116925940_116926019_116927835_116927985_116938754_116938859_116943885
transcript_63954.known	chr4	+	1369	10	FSM	ENSMUSG00000028683.15	ENSMUST00000070610.6	1369	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	208.510650466648	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTAGGTGTGGCTCAGT	1864	False	NA	13	True	AATAAA	-13	NA	116879351	116944042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_116879510_116885607_116885754_116901632_116901793_116909920_116910033_116915960_116916051_116922537_116922666_116923570_116923762_116925940_116926019_116927835_116927985_116943885
transcript_63957.nic	chr4	+	2523	10	ISM	ENSMUSG00000028681.12	ENSMUST00000144620.8	4356	22	13404	0	-735	0	3prime_fragment	FALSE	canonical	3	29	junction_6	5.35412613473634	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGATGGCTGGAGTTTT	NA	False	NA	2	True	AATATA	-16	NA	116966696	116972580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_116966828_116966933_116967283_116967391_116967705_116967795_116967939_116968023_116968205_116968321_116968603_116968711_116968850_116971208_116971352_116971439_116971540_116971836
transcript_63961.known	chr4	-	1620	8	FSM	ENSMUSG00000073771.12	ENSMUST00000183310.2	1620	8	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_7	6.73401357108153	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAAGCTTTTCCTCCTGAG	9747	False	NA	NA	False	NA	NA	NA	116982815	116977371	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_116978059_116978167_116978294_116978394_116978527_116978610_116978680_116979415_116979476_116980925_116980980_116981135_116981338_116982525
transcript_63972.known	chr4	-	1152	2	FSM	ENSMUSG00000073771.12	ENSMUST00000097915.4	1152	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGATGAATATTTGTATTC	NA	False	NA	-24	True	NA	NA	NA	116979582	116977073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_116978059_116979415
transcript_63989.known	chr4	-	860	6	FSM	ENSMUSG00000047675.16	ENSMUST00000102696.5	860	6	0	0	0	0	multi-exon	FALSE	canonical	3	8358	junction_5	1894.95893359197	80770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGTTTGGAGAGGCTGG	NA	False	NA	-13	True	AATAAA	-30	NA	117013440	117011023	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_117011185_117011495_117011626_117011834_117012011_117012204_117012305_117012767_117012875_117013254
transcript_64.known	ERCC-00136	+	1025	1	FSM	ERCC-00136A	EF011063	1025	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4247	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1025	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00136_+_0_1000
transcript_64008.known	chr4	-	523	4	FSM	ENSMUSG00000047675.16	ENSMUST00000144051.8	523	4	0	0	0	0	multi-exon	FALSE	canonical	3	8358	junction_3	2305.8312070825	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGGCGACTTGGGGGGGG	NA	False	NA	NA	False	NA	NA	NA	117013266	117011706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_117012011_117012204_117012305_117012767_117012875_117013254
transcript_64013.known	chr4	-	1120	3	FSM	ENSMUSG00000047675.16	ENSMUST00000140226.2	1120	3	0	0	0	0	multi-exon	FALSE	canonical	3	8358	junction_2	2777.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAATTCAAAAGAAAT	NA	False	NA	NA	False	TTTAAA	-13	NA	117013281	117011587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_117012011_117012204_117012875_117013254
transcript_64014.known	chr4	-	353	2	FSM	ENSMUSG00000047675.16	ENSMUST00000137423.2	353	2	0	0	0	0	multi-exon	FALSE	canonical	3	13045	junction_1	0	1493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCTAGGTGTTTGGAG	NA	False	NA	-20	True	AATAAA	-23	NA	117011694	117011030	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_117011185_117011495
transcript_64017.known	chr4	-	2842	20	FSM	ENSMUSG00000028678.14	ENSMUST00000065896.9	2842	20	0	0	0	0	multi-exon	FALSE	canonical	3	415	junction_14	29.7897526488705	466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAGCAGATTCTGTGTGA	NA	False	NA	88	True	AATAAA	-17	NA	117039836	117016835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_117017580_117019206_117019312_117019409_117019516_117019799_117019868_117022338_117022450_117022554_117022760_117023508_117023652_117024077_117024170_117024245_117024310_117024490_117024582_117027031_117027195_117027281_117027337_117028913_117029010_117029481_117029583_117030798_117030919_117032082_117032206_117035117_117035167_117035341_117035444_117037768_117037864_117039627
transcript_64021.known	chr4	-	1009	5	FSM	ENSMUSG00000028678.14	ENSMUST00000141675.8	1009	5	0	0	0	0	multi-exon	FALSE	canonical	3	445	junction_2	14.142135623731	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAAAAAACAGCAGA	NA	False	NA	NA	False	NA	NA	NA	117039789	117031604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_117032206_117035117_117035167_117035341_117035444_117037768_117037864_117039627
transcript_64022.known	chr4	+	922	4	FSM	ENSMUSG00000048772.16	ENSMUST00000125943.8	922	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	10.6144555520604	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCATGCATAATTGTGTC	NA	False	NA	NA	False	NA	NA	NA	117109236	117125711	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_117109332_117109824_117109911_117123056_117123173_117125086
transcript_64023.known	chr4	+	991	3	FSM	ENSMUSG00000048772.16	ENSMUST00000062824.12	991	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	3.5	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTTATCTATCCTGGGG	NA	False	NA	NA	False	AATAAA	-18	NA	117109147	117125777	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_117109332_117123056_117123173_117125086
transcript_64024.known	chr4	+	923	3	FSM	ENSMUSG00000048772.16	ENSMUST00000106434.8	923	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTATCTATCCTGGGGGC	NA	False	NA	NA	False	AATAAA	-20	NA	117109238	117125779	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_117109353_117123056_117123173_117125086
transcript_64030.known	chr4	-	1949	11	FSM	ENSMUSG00000028677.20	ENSMUST00000221654.2	1949	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	319.717437747771	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACAAGCTGCTGTCTGT	9570	False	NA	NA	False	ATTAAA	-6	NA	117146643	117128668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143047_117143170_117146222_117146266_117146399
transcript_64036.nnic	chr4	-	1685	11	NNC	ENSMUSG00000028677.20	novel	3029	15	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	423.451059745988	282	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGTCTGTGTTTGAAG	9561	False	NA	NA	False	ATTAAA	-14	NA	117146652	117128660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143125_117143170_117146222_117146266_117146602
transcript_64039.nic	chr4	-	1847	10	ISM	ENSMUSG00000028677.20	ENSMUST00000221654.2	1949	11	244	-8	83	0	3prime_fragment	TRUE	canonical	0	0	junction_5	318.755914977798	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGTCTGTGTTTGAAG	9814	False	NA	NA	False	ATTAAA	-14	NA	117146399	117128660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143047_117143170_117146222
transcript_64040.nic	chr4	-	1769	10	ISM	ENSMUSG00000028677.20	ENSMUST00000030439.15	3029	15	207850	1	83	0	3prime_fragment	FALSE	canonical	0	0	junction_5	365.792425790136	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGTCTGTGTTTGAAG	9814	False	NA	NA	False	ATTAAA	-14	NA	117146399	117128660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143125_117143170_117146222
transcript_64043.known	chr4	-	1330	11	FSM	ENSMUSG00000028677.20	ENSMUST00000128122.9	1330	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	401.226232940968	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTATAAATGGGACACTTT	9186	False	NA	-38	True	AATATA	-23	NA	117147027	117129150	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143047_117143170_117146222_117146266_117146920
transcript_64047.nnic	chr4	+	615	3	NNC	ENSMUSG00000087228.2	novel	660	2	NA	NA	-17	3819	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.5	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATCTATTAGTATACTGT	NA	False	NA	NA	False	CATAAA	-1	NA	117353631	117361618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_117353926_117357416_117357526_117361406
transcript_64055.nnic	chr4	+	1440	9	NNC	ENSMUSG00000033423.17	novel	1336	8	NA	NA	-105	0	at_least_one_novel_splicesite	FALSE	canonical	3	99	junction_1	225.311693826574	872	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGTGTGTCTGGAGCCA	NA	False	NA	9	True	AATAAA	-16	NA	117407456	117531478	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_117407560_117410164_117410241_117421817_117422096_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
transcript_6406.nic	chr10	+	1937	13	ISM	ENSMUSG00000019977.17	ENSMUST00000219915.2	2733	18	-59	13954	-5	2325	5prime_fragment	FALSE	canonical	3	854	junction_4	101.440013746494	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTCTATGCGTACACATA	NA	False	NA	NA	False	ATTAAA	-23	NA	21171872	21230828	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537
transcript_64060.known	chr4	+	1719	9	FSM	ENSMUSG00000033423.17	ENSMUST00000037127.15	1719	9	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_1	182.065535934179	752	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCTTGTGTCTAAGGC	NA	False	NA	25	True	AATAAA	-32	NA	117407561	117531494	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_117407928_117410164_117410241_117421817_117422096_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
transcript_64062.nnic	chr4	+	1405	8	NNC	ENSMUSG00000033423.17	novel	1336	8	NA	NA	-146	0	at_least_one_novel_splicesite	TRUE	canonical	3	100	junction_1	221.525785111774	649	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGTGTGTCTGGAGCCA	NA	False	NA	9	True	AATAAA	-16	NA	117407415	117531478	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_117407560_117421817_117422096_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
transcript_6407.known	chr10	+	948	6	FSM	ENSMUSG00000019977.17	ENSMUST00000218785.2	948	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_5	524.818216147268	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTATCTCATGGACTTTGT	NA	False	NA	NA	False	AATAAA	-13	NA	21171928	21213075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21184997_21185214_21212865
transcript_64090.known	chr4	-	1566	11	FSM	ENSMUSG00000009640.12	ENSMUST00000102687.4	1566	11	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_10	49.3527101586124	778	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATTGTTTCCTCACTTCC	NA	False	NA	-35	True	AATAGA	-20	NA	117539470	117531877	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533333_117533546_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029_117539180_117539410
transcript_64091.nic	chr4	-	1578	11	NIC	ENSMUSG00000009640.12	novel	1566	11	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_10	51.6295458047037	689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCTGATTGTTTCCTCA	NA	False	NA	-40	True	AATAGA	-15	NA	117539476	117531882	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533333_117533546_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029_117539191_117539410
transcript_64096.known	chr4	-	1771	10	FSM	ENSMUSG00000009640.12	ENSMUST00000135582.8	1771	10	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_9	54.4190416928251	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATTGTTTCCTCACTTCC	NA	False	NA	-35	True	AATAGA	-20	NA	117539450	117531877	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029_117539191_117539410
transcript_64105.known	chr4	-	1862	8	FSM	ENSMUSG00000009640.12	ENSMUST00000129510.2	1862	8	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_4	16.5393778724643	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCTGATTGTTTCCTCA	NA	False	NA	-40	True	AATAGA	-15	NA	117539180	117531882	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029
transcript_64106.known	chr4	+	3479	14	FSM	ENSMUSG00000028542.18	ENSMUST00000030269.14	3479	14	0	0	0	0	multi-exon	FALSE	canonical	2	62	junction_6	13.9750411501337	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTGATGTGCTTTGTCT	NA	False	NA	27	True	AATGAA	-21	NA	117692247	117726502	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_117692675_117700215_117700333_117713071_117713229_117713886_117714019_117714399_117714671_117720625_117720759_117720885_117721021_117721109_117721214_117721601_117721840_117721950_117722086_117722194_117722295_117722392_117722494_117724955_117725127_117725244
transcript_64108.known	chr4	-	3990	7	FSM	ENSMUSG00000078588.11	ENSMUST00000164853.8	3990	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	2.14087209644419	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCTGCCCGGCCTGAAT	NA	False	NA	NA	False	CATAAA	-15	NA	117729426	117723720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_117727026_117727106_117727186_117727302_117727373_117727712_117727768_117728260_117728387_117728943_117729058_117729185
transcript_64109.nic	chr4	-	1018	3	ISM	ENSMUSG00000028541.15	ENSMUST00000106421.9	1801	8	5976	-171	5155	0	3prime_fragment	FALSE	canonical	3	58	junction_2	4.5	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCCTTGTCTGTCTGTGA	NA	False	NA	-9	True	AGTAAA	-17	NA	117734333	117730327	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_117731201_117734076_117734182_117734293
transcript_6411.known	chr10	+	2625	5	FSM	ENSMUSG00000019977.17	ENSMUST00000092674.14	2625	5	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_4	452.231688407613	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTGCATGTTATTTAAAT	NA	False	NA	NA	False	AATAAA	-24	NA	21171936	21187108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21184997
transcript_64113.nic	chr4	-	1091	8	NIC	ENSMUSG00000033379.14	novel	1000	8	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	3	113	junction_7	877.288982709616	505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTGAGGCTTCTGTTGG	NA	False	NA	-5	True	AATAAA	-17	NA	117744565	117741526	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117743786_117743892_117744366
transcript_64116.known	chr4	-	935	7	FSM	ENSMUSG00000033379.14	ENSMUST00000150204.8	935	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	972.524449849748	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTCAGTGAGGCTTCTGT	NA	False	NA	-8	True	AATAAA	-14	NA	117744517	117741529	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117744366
transcript_64120.known	chr4	-	1000	8	FSM	ENSMUSG00000033379.14	ENSMUST00000036380.14	1000	8	0	0	0	0	multi-exon	FALSE	canonical	3	2123	junction_7	187.196393650942	10184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGGCTTCTGTTGGCCCC	NA	False	NA	-1	True	AATAAA	-21	NA	117744526	117741522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117743786_117743836_117744366
transcript_64121.known	chr4	-	646	4	FSM	ENSMUSG00000033379.14	ENSMUST00000133530.8	646	4	0	0	0	0	multi-exon	FALSE	canonical	3	2536	junction_3	23.6690139681023	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTGAGGCTTCTGTTGG	NA	False	NA	-5	True	AATAAA	-17	NA	117743091	117741526	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000
transcript_64122.known	chr4	-	348	3	FSM	ENSMUSG00000033379.14	ENSMUST00000136596.2	348	3	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_2	1273	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGGTGAGTGTTGGAGTG	NA	False	NA	NA	False	NA	NA	NA	117744530	117743477	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_117743557_117743786_117743892_117744366
transcript_64124.known	chr4	-	2555	6	FSM	ENSMUSG00000028540.7	ENSMUST00000030265.4	2555	6	0	0	0	0	multi-exon	TRUE	canonical	3	66	junction_1	6.70522184569608	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATTTGGGCCTAAACAAA	NA	False	NA	NA	False	AATAAA	-13	NA	117749229	117745839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_117746874_117746951_117747129_117747214_117747899_117748091_117748316_117748511_117748625_117748906
transcript_64128.known	chr4	-	3595	20	FSM	ENSMUSG00000033365.15	ENSMUST00000036156.6	3595	20	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_19	11.8213853822033	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGCCTCCTTTCTCTGT	NA	False	NA	0	True	AGTAAA	-19	NA	117772196	117751682	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_117751855_117751940_117752123_117752408_117752499_117752616_117752676_117752759_117752827_117754964_117755018_117757845_117757943_117758114_117758253_117758754_117758836_117760317_117760462_117760594_117760730_117760890_117760918_117760994_117761177_117761573_117761722_117761806_117761928_117762101_117762269_117762377_117762520_117762639_117762781_117768969_117769707_117771484
transcript_6413.known	chr10	+	1998	5	FSM	ENSMUSG00000019977.17	ENSMUST00000061324.6	1998	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	490.144366488079	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGTTTGCATGTTATTTA	NA	False	NA	NA	False	AATAAA	-21	NA	21171916	21187105	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21185641
transcript_64130.known	chr4	-	2225	12	FSM	ENSMUSG00000028538.13	ENSMUST00000106410.8	2225	12	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_11	18.1899981599189	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCCTCCTGTTGTTTTC	1862	False	NA	-5	True	AATAAA	-14	NA	117992111	117789354	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_117790334_117797206_117797354_117797550_117797698_117815624_117815812_117816271_117816368_117817194_117817259_117821526_117821622_117871901_117871995_117889036_117889080_117911846_117911895_117964745_117964891_117991930
transcript_64131.known	chr4	-	2143	11	FSM	ENSMUSG00000028538.13	ENSMUST00000097912.8	2143	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_9	21.8286508973871	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTGGCCTCCTGTTGTTT	1894	False	NA	-7	True	AATAAA	-12	NA	117992079	117789356	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_117790334_117797206_117797354_117797550_117797698_117815624_117815812_117816271_117816368_117817194_117817259_117821526_117821622_117871901_117871995_117889036_117889080_117964745_117964891_117991930
transcript_64137.known	chr4	-	7656	33	FSM	ENSMUSG00000033295.15	ENSMUST00000049074.13	7656	33	0	0	0	0	multi-exon	TRUE	canonical	3	357	junction_20	50.8611774834205	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTCTGTCTCAGCTCCTG	NA	False	NA	-2	True	AATAAA	-30	NA	118148602	118065409	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_118067087_118067565_118067702_118067813_118067969_118068197_118068324_118068555_118068683_118068896_118069076_118069160_118069447_118069523_118069679_118069916_118070037_118070653_118070830_118070937_118071062_118074288_118074387_118077689_118077806_118080422_118080578_118080914_118081134_118081695_118081790_118081874_118082129_118082225_118082324_118082995_118083575_118083650_118083769_118087891_118088086_118088682_118088989_118092155_118092301_118092745_118092883_118093109_118093692_118094935_118095206_118106095_118106207_118114685_118114875_118126372_118126515_118126675_118126822_118134545_118134682_118141969_118142050_118148376
transcript_64139.known	chr4	+	936	8	FSM	ENSMUSG00000006395.17	ENSMUST00000194248.2	936	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	6.43333157097011	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATATGTGTATATTACAG	NA	False	NA	NA	False	ATTAAA	-16	NA	118217186	118219941	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_118217429_118217502_118217587_118218812_118218928_118219070_118219150_118219237_118219288_118219387_118219458_118219559_118219695_118219780
transcript_64140.known	chr4	+	843	7	FSM	ENSMUSG00000006395.17	ENSMUST00000106393.8	843	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.6249253283145	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATATGTGTATATTACAG	NA	False	NA	NA	False	ATTAAA	-16	NA	118217195	118219941	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_118217429_118218812_118218928_118219070_118219150_118219237_118219288_118219387_118219458_118219559_118219695_118219780
transcript_64142.known	chr4	+	1296	1	FSM	ENSMUSG00000006395.17	ENSMUST00000179719.2	1296	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	AATACA	-12	NA	118217195	118218491	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_118217200_118218500
transcript_64150.known	chr4	+	1145	7	FSM	ENSMUSG00000006392.17	ENSMUST00000019229.15	1145	7	0	0	0	0	multi-exon	FALSE	canonical	3	450	junction_1	88.2754527349226	2483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGCCATTCCTTGTCCTA	NA	False	NA	32	True	NA	NA	NA	118266562	118272308	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_118266584_118268081_118268201_118268854_118269000_118269548_118269690_118269860_118269943_118270823_118271073_118271920
transcript_64154.known	chr4	+	1134	7	FSM	ENSMUSG00000006392.17	ENSMUST00000084319.11	1134	7	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_2	198.998673920763	554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGCCATTCCTTGTCCTA	NA	False	NA	32	True	NA	NA	NA	118266533	118272308	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_118266584_118268081_118268201_118268894_118269000_118269548_118269690_118269860_118269943_118270823_118271073_118271920
transcript_64168.known	chr4	+	635	5	FSM	ENSMUSG00000006392.17	ENSMUST00000144577.2	635	5	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	286.723189679524	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAGGAGGGATGTGGCAG	NA	False	NA	NA	False	NA	NA	NA	118266597	118269941	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_118266747_118268081_118268201_118268854_118269000_118269548_118269690_118269860
transcript_64176.known	chr4	+	1811	8	FSM	ENSMUSG00000006390.16	ENSMUST00000006557.13	1811	8	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_5	11.9505785019225	528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTTGTTCAACGGATGC	NA	False	NA	NA	False	AATAAA	-20	NA	118285289	118290150	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_118285413_118287692_118287753_118287911_118288103_118288259_118288341_118288462_118288520_118288605_118288712_118288793_118288931_118289094
transcript_64179.known	chr4	+	1248	7	FSM	ENSMUSG00000006390.16	ENSMUST00000102673.11	1248	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	45.4376862673853	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGATTGTGTGTGTGTG	NA	False	NA	1	True	ATTAAA	-14	NA	118285321	118289810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_118285413_118287692_118287753_118288259_118288341_118288462_118288520_118288605_118288712_118288793_118288931_118289094
transcript_64184.known	chr4	-	1793	10	FSM	ENSMUSG00000006398.16	ENSMUST00000006565.13	1793	10	0	0	0	0	multi-exon	TRUE	canonical	3	1043	junction_4	200.755117703013	2904	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCCAGCATCCTTCCTAC	NA	False	NA	-11	True	AATAAA	-17	NA	118294549	118290097	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_118290339_118290677_118290796_118291947_118292074_118292669_118292899_118292973_118293069_118293165_118293363_118293456_118293586_118293706_118293804_118293890_118294040_118294137
transcript_64185.known	chr4	+	736	3	FSM	ENSMUSG00000028536.13	ENSMUST00000106367.8	736	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	9	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCTCAGGGTCAGAGTTC	8696	False	NA	NA	False	TTTAAA	-19	NA	118384195	118387052	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_118384442_118386395_118386509_118386675
transcript_64186.known	chr4	+	958	3	FSM	ENSMUSG00000028536.13	ENSMUST00000030261.6	958	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTTTTTATATTTTTC	8940	False	NA	NA	False	NA	NA	NA	118384439	118387425	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_118384535_118386395_118386509_118386675
transcript_64188.known	chr4	-	1864	4	FSM	ENSMUSG00000050854.10	ENSMUST00000060214.10	1864	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4.18993502999218	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGTCTGCACCATGGCA	8325	False	NA	NA	False	AATAAA	-23	NA	118400925	118398137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_118399569_118399797_118399958_118400552_118400697_118400796
transcript_64189.known	chr4	-	929	4	FSM	ENSMUSG00000050854.10	ENSMUST00000128098.8	929	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	2.44948974278318	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGACCCTGGCTGGGCTGG	8009	False	NA	NA	False	NA	NA	NA	118401241	118399055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_118399569_118399797_118399958_118400552_118400697_118401129
transcript_64190.known	chr4	-	717	2	FSM	ENSMUSG00000050854.10	ENSMUST00000150044.2	717	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGGCCCTGCTGGTTCT	9091	False	NA	NA	False	NA	NA	NA	118400159	118399213	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_118399569_118399797
transcript_64197.known	chr4	+	2960	9	FSM	ENSMUSG00000028729.16	ENSMUST00000030501.15	2960	9	0	0	0	0	multi-exon	FALSE	canonical	3	2261	junction_5	110.190105612981	8545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGTCATGATGTCTGTT	NA	False	NA	6	True	NA	NA	NA	118477995	118484973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_118478195_118478278_118478363_118478557_118478731_118479266_118479391_118480494_118480585_118480807_118480884_118481331_118481426_118482719_118482883_118483016
transcript_64198.known	chr4	+	805	3	FSM	ENSMUSG00000028729.16	ENSMUST00000130219.2	805	3	0	0	0	0	multi-exon	FALSE	canonical	3	2481	junction_2	26.5	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTAGTTGGTGTGTCTGTC	NA	False	NA	NA	False	AATAAA	-40	NA	118478044	118479128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_118478195_118478278_118478363_118478557
transcript_64199.nnic	chr4	+	1091	4	Fusion	ENSMUSG00000085895.2_ENSMUSG00000073768.4	novel	5810	4	NA	NA	3233	-2165	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTCATCCAATCAGTCCA	NA	False	NA	NA	False	NA	NA	NA	118753514	118854490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_118753921_118755305_118755555_118798636_118798845_118854262
transcript_6420.known	chr10	+	563	7	FSM	ENSMUSG00000019977.17	ENSMUST00000218714.2	563	7	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_2	378.979660843868	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTCAGCGCTCGATTGAC	NA	False	NA	NA	False	NA	NA	NA	21171956	21228452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_21172076_21175076_21175125_21221049_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440
transcript_64201.nnic	chr4	+	872	3	Fusion	ENSMUSG00000085895.2_ENSMUSG00000073768.4	novel	5810	4	NA	NA	3233	-2176	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCTCCACCCCACCTCATC	NA	False	NA	NA	False	NA	NA	NA	118753514	118854479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_118753921_118755305_118755555_118854262
transcript_64207.known	chr4	-	326	2	FSM	ENSMUSG00000087238.2	ENSMUST00000137353.2	326	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTACTCCCTCCATCTTCT	NA	False	NA	NA	False	NA	NA	NA	118854395	118841254	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_118841448_118854262
transcript_64210.known	chr4	+	3260	10	FSM	ENSMUSG00000028645.12	ENSMUST00000030398.10	3260	10	0	0	0	0	multi-exon	TRUE	canonical	3	565	junction_3	58.8236535946402	605	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAATTTTCCCTGCATACA	576	False	NA	NA	False	TATAAA	-8	NA	118965907	118995180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_118966170_118977587_118977684_118989319_118989481_118989639_118989881_118990293_118990457_118990548_118990737_118991051_118991157_118991565_118991668_118992925_118993130_118993442
transcript_64212.known	chr4	+	2241	9	FSM	ENSMUSG00000028645.12	ENSMUST00000174372.3	2241	9	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_4	226.359779996359	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTTTCAAATGCTTGTG	779	False	NA	36	True	TATAAA	-18	NA	118966110	118994527	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_118966170_118977587_118977684_118989319_118989481_118989639_118989881_118990548_118990737_118991051_118991157_118991565_118991668_118992925_118993130_118993442
transcript_64218.known	chr4	-	2341	2	FSM	ENSMUSG00000045268.14	ENSMUST00000052715.10	2341	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGTACTTATTTGGGGA	NA	False	NA	2	True	AGTAAA	-19	NA	119031053	119026709	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_119028240_119030242
transcript_64219.known	chr4	-	1588	2	FSM	ENSMUSG00000045268.14	ENSMUST00000106355.5	1588	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGTACTTATTTGGGGA	NA	False	NA	2	True	AGTAAA	-19	NA	119031392	119026709	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_119028240_119031334
transcript_6422.known	chr10	+	485	2	FSM	ENSMUSG00000037535.6	ENSMUST00000187763.2	485	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCTCTGTCTCTCCCAGT	6230	False	NA	NA	False	AATAAA	-38	NA	21295375	21301645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_21295418_21301202
transcript_64220.known	chr4	+	684	4	FSM	ENSMUSG00000028643.12	ENSMUST00000106345.3	684	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	208.740668454105	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTGTTCTTGCTTTAGAG	NA	False	NA	11	True	AATAAA	-14	NA	119052603	119058495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_119052684_119053068_119053219_119055955_119056008_119058093
transcript_64223.known	chr4	+	733	3	FSM	ENSMUSG00000028643.12	ENSMUST00000030395.9	733	3	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_2	4.5	2701	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTGTTCTTGCTTTAGAG	NA	False	NA	11	True	AATAAA	-14	NA	119052502	119058495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_119052684_119053068_119053219_119058093
transcript_64225.known	chr4	+	832	3	FSM	ENSMUSG00000028643.12	ENSMUST00000097908.4	832	3	0	0	0	0	multi-exon	FALSE	canonical	2	48	junction_1	197.5	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTGTTCTTGCTTTAGAG	NA	False	NA	11	True	AATAAA	-14	NA	119052692	119058495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_119052973_119053068_119053219_119058093
transcript_6423.known	chr10	+	1062	3	FSM	ENSMUSG00000050844.6	ENSMUST00000057341.6	1062	3	0	0	0	0	multi-exon	TRUE	canonical	3	7	junction_2	4.5	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTGGACTCTGTCTTAT	NA	False	NA	NA	False	NA	NA	NA	21469043	21498275	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_21469134_21469230_21469472_21497544
transcript_64234.known	chr4	-	441	5	FSM	ENSMUSG00000078584.10	ENSMUST00000144309.2	441	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	161.922049147113	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTCGTGGACTCCATATG	NA	False	NA	NA	False	NA	NA	NA	119089882	119083668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_119083725_119083997_119084130_119085223_119085311_119089550_119089667_119089832
transcript_64236.nnic	chr4	-	750	5	NNC	ENSMUSG00000078584.10	novel	7151	5	NA	NA	-7	174	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	164.079820514285	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGATGATGTAGCTGCTG	NA	False	NA	NA	False	NA	NA	NA	119089916	119083404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_119083725_119083997_119084130_119085223_119085311_119089550_119089667_119089821
transcript_6424.nic	chr10	+	726	2	ISM	ENSMUSG00000050844.6	ENSMUST00000057341.6	1062	3	-56	28465	-56	-27854	5prime_fragment	FALSE	canonical	3	16	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGCCTGGAGAACCCACT	NA	False	NA	NA	False	AATAAA	-16	NA	21468987	21469810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_21469134_21469230
transcript_64245.known	chr4	-	7151	5	FSM	ENSMUSG00000078584.10	ENSMUST00000141112.2	7151	5	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_4	34.1869858279434	1070	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGCTTGTTCCCCGACT	NA	False	NA	NA	False	NA	NA	NA	119089909	119077038	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_119083725_119083997_119084130_119085223_119085311_119089550_119089667_119089779
transcript_64246.known	chr4	-	657	6	FSM	ENSMUSG00000078584.10	ENSMUST00000046260.13	657	6	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_4	170.314532556679	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATGCACTGAACCCACCT	NA	False	NA	NA	False	NA	NA	NA	119089875	119083578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_119083725_119083997_119084130_119085223_119085311_119085861_119085942_119089550_119089667_119089779
transcript_64247.known	chr4	+	924	5	FSM	ENSMUSG00000066058.12	ENSMUST00000084309.12	924	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.11803398874989	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGACATCATCCTATCTG	3305	False	NA	NA	False	NA	NA	NA	119112610	119117052	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_119112993_119114082_119114248_119114348_119114434_119116004_119116158_119116913
transcript_64250.known	chr4	+	4168	4	FSM	ENSMUSG00000066058.12	ENSMUST00000094823.4	4168	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.816496580927726	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGACCCCCCGGGGTTTG	3400	False	NA	NA	False	AATAAA	-8	NA	119112705	119119635	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_119112993_119114082_119114248_119114348_119114434_119116004
transcript_64252.nnic	chr4	+	557	3	NNC	ENSMUSG00000066058.12	novel	924	5	NA	NA	1834	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGACATCATCCTATCTG	5234	False	NA	NA	False	NA	NA	NA	119114539	119117052	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_119114805_119116004_119116158_119116913
transcript_6426.known	chr10	+	2602	12	FSM	ENSMUSG00000019970.16	ENSMUST00000164659.8	2602	12	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_1	208.20654874943	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTGTGTCATGTGTTA	NA	False	NA	13	True	AATAAA	-19	NA	21854570	21875797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_21854882_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
transcript_64289.known	chr4	-	1054	5	FSM	ENSMUSG00000028639.15	ENSMUST00000127737.2	1054	5	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_2	4449.11772152637	4746	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAATAATGTCTAGTTTT	NA	False	NA	NA	False	AATAAA	-7	NA	119139989	119135186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_119135565_119136130_119136409_119138766_119138850_119139342_119139646_119139977
transcript_6429.known	chr10	+	2476	12	FSM	ENSMUSG00000019970.16	ENSMUST00000100036.10	2476	12	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	266.915376443206	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTGTGTCATGTGTTA	NA	False	NA	13	True	AATAAA	-19	NA	21868121	21875797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_21868307_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
transcript_64290.known	chr4	-	718	2	FSM	ENSMUSG00000028639.15	ENSMUST00000145976.2	718	2	0	0	0	0	multi-exon	FALSE	canonical	3	10943	junction_1	0	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAAAAAAAAAAAAGGC	NA	False	NA	9	True	NA	NA	NA	119136647	119135363	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_119135565_119136130
transcript_64294.known	chr4	-	800	10	FSM	ENSMUSG00000060288.14	ENSMUST00000106318.8	800	10	0	0	0	0	multi-exon	FALSE	canonical	2	32	junction_8	163.771144144263	2090	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTTCTGTAGTTACTATT	9582	False	NA	-3	True	AATAAA	-19	NA	119177743	119157206	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_119157381_119167955_119168045_119168728_119168770_119169415_119169504_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177051_119177365_119177431_119177605
transcript_64299.known	chr4	-	1288	10	FSM	ENSMUSG00000060288.14	ENSMUST00000106321.9	1288	10	0	0	0	0	multi-exon	FALSE	canonical	2	32	junction_8	172.260640876149	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTACCTTGTCTAGCCTG	9644	False	NA	-2	True	NA	NA	NA	119177681	119164356	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_119165081_119167955_119168045_119168728_119168770_119169415_119169504_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177051_119177365_119177431_119177605
transcript_6430.known	chr10	+	2576	12	FSM	ENSMUSG00000019970.16	ENSMUST00000092673.11	2576	12	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	274.769775907151	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTGCATAAATTGTGTCA	NA	False	NA	6	True	AATAAA	-12	NA	21869788	21875790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_21870081_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
transcript_64303.known	chr4	-	613	9	FSM	ENSMUSG00000060288.14	ENSMUST00000106317.2	613	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	164.818413337224	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGGAATCCTTGTGACCT	9629	False	NA	NA	False	AATAAA	-21	NA	119177696	119168510	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_119168634_119168728_119168770_119169415_119169504_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177051_119177365_119177431_119177605
transcript_64305.known	chr4	-	622	8	FSM	ENSMUSG00000060288.14	ENSMUST00000106319.8	622	8	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	123.382928068576	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTTCTGTAGTTACTATT	9631	False	NA	-3	True	AATAAA	-19	NA	119177694	119157206	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_119157381_119167955_119168045_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177051_119177365_119177431_119177605
transcript_64309.nic	chr4	-	1874	9	NIC	ENSMUSG00000028637.17	novel	1312	6	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	2	12	junction_1	4.28478412525065	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGGTGTTAGTAATTTC	9717	False	NA	NA	False	NA	NA	NA	119272724	119209442	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_119209850_119210266_119210422_119213834_119214045_119216754_119216935_119250738_119250855_119255364_119255437_119258196_119258348_119261270_119261462_119272332
transcript_64313.known	chr4	-	1034	6	FSM	ENSMUSG00000028637.17	ENSMUST00000238609.2	1034	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	8.84081444212014	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTCTTGGCAGTTTATC	9765	False	NA	NA	False	TTTAAA	-5	NA	119272676	119250056	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_119250217_119250738_119250855_119255364_119255437_119258196_119258348_119261270_119261462_119272332
transcript_64316.nnic	chr4	-	1093	6	NNC	ENSMUSG00000028637.17	novel	1789	5	NA	NA	-6	-328	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	8.47584804016684	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAAGGGTTGAGTCTTGTT	9717	False	NA	NA	False	NA	NA	NA	119272724	119248022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_119248194_119250738_119250855_119255364_119255437_119258196_119258348_119261270_119261462_119272332
transcript_64317.known	chr4	-	894	5	FSM	ENSMUSG00000028637.17	ENSMUST00000146186.3	894	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	7.22841614740048	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTTCCTGTGGACAAATA	2217	False	NA	NA	False	NA	NA	NA	119216999	119196931	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_119197071_119206926_119207072_119210266_119210422_119213834_119214045_119216754
transcript_64318.known	chr4	-	1789	5	FSM	ENSMUSG00000028637.17	ENSMUST00000238287.2	1789	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	3.96074487943871	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAACTGTGCTTTGCCTCC	9742	False	NA	NA	False	NA	NA	NA	119272699	119249846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_119250855_119255364_119255437_119258196_119258348_119261270_119261462_119272332
transcript_6432.known	chr10	+	2456	12	FSM	ENSMUSG00000019970.16	ENSMUST00000020145.12	2456	12	0	0	0	0	multi-exon	FALSE	canonical	3	717	junction_1	88.4218850289119	1258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCATGTGTTAACTTT	NA	False	NA	18	True	AATAAA	-24	NA	21870564	21875802	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
transcript_64320.known	chr4	-	1128	4	FSM	ENSMUSG00000028637.17	ENSMUST00000131141.3	1128	4	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	4.92160768674447	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTGGTGTTAGTAATTT	2105	False	NA	NA	False	NA	NA	NA	119217111	119209443	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_119209850_119210266_119210422_119213834_119214045_119216754
transcript_64321.known	chr4	-	761	1	FSM	ENSMUSG00000028637.17	ENSMUST00000238559.2	761	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTCTTGACAGCGGTATA	9730	False	NA	NA	False	ATTAAA	-19	NA	119272711	119271950	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_119272000_119272700
transcript_64322.known	chr4	-	997	5	FSM	ENSMUSG00000028637.17	ENSMUST00000143494.3	997	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	9.01041064547005	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGGTGTTAGTAATTTC	2127	False	NA	NA	False	NA	NA	NA	119217089	119209442	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_119209850_119210266_119210422_119213834_119214045_119216754_119216935_119217044
transcript_64328.known	chr4	-	1443	3	FSM	ENSMUSG00000028636.15	ENSMUST00000030385.13	1443	3	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_2	22	862	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCGGGTTTCTGGTTTTTT	5505	False	NA	-4	True	AATAAA	-30	NA	119279617	119275726	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_119276491_119278776_119278881_119279042
transcript_64329.known	chr4	-	954	3	FSM	ENSMUSG00000028636.15	ENSMUST00000106316.2	954	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	146.5	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCGGGTTTCTGGTTTTTT	5549	False	NA	-4	True	AATAAA	-30	NA	119279573	119275726	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_119276491_119278776_119278881_119279487
transcript_64334.known	chr4	-	1543	2	FSM	ENSMUSG00000028636.15	ENSMUST00000140641.2	1543	2	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCGGGTTTCTGGTTTTTT	5567	False	NA	-4	True	AATAAA	-30	NA	119279555	119275726	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_119276491_119278776
transcript_64335.known	chr4	+	1464	8	FSM	ENSMUSG00000070806.6	ENSMUST00000094819.5	1464	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.12485826771597	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAAGCCCCACCCCCACC	NA	False	NA	NA	False	ATTAAA	-23	NA	119280010	119311185	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_119280193_119291146_119291289_119294276_119294449_119298945_119299116_119301956_119302080_119305278_119305391_119307451_119307598_119310768
transcript_64337.known	chr4	-	4097	5	FSM	ENSMUSG00000048899.9	ENSMUST00000049994.8	4097	5	0	0	0	0	multi-exon	TRUE	canonical	3	32	junction_2	4.35889894354067	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTTCCTATGTCTTGTCT	9973	False	NA	-4	True	AATATA	-24	NA	119349825	119322479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_119325723_119327663_119327868_119331715_119331803_119334987_119335219_119349493
transcript_64339.known	chr4	+	4660	12	FSM	ENSMUSG00000032998.17	ENSMUST00000106310.9	4660	12	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_5	23.2197550545519	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCAGCCTGATGGTCTGT	NA	False	NA	23	True	AATAAA	-19	NA	119396884	119486316	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_119397043_119417799_119417861_119430672_119430998_119442946_119443022_119459605_119459690_119473704_119473834_119476480_119476662_119477131_119477546_119478797_119478900_119480417_119480610_119482093_119482202_119483485
transcript_64341.known	chr4	+	594	3	FSM	ENSMUSG00000023247.3	ENSMUST00000024015.3	594	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGGTGCCTTCGTTTCTT	NA	False	NA	NA	False	AATAAA	-18	NA	119494900	119496668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_119495023_119495798_119496010_119496407
transcript_64343.known	chr4	-	605	3	FSM	ENSMUSG00000032978.15	ENSMUST00000044426.8	605	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAACCAAGTGTCCGTGT	NA	False	NA	NA	False	AATAAA	-12	NA	119516151	119513803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_119514048_119514725_119514913_119515977
transcript_64344.known	chr4	+	1115	4	FSM	ENSMUSG00000028634.18	ENSMUST00000141605.8	1115	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.942809041582063	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATGCATTATTATTACCA	NA	False	NA	NA	False	ATTAAA	-32	NA	119590980	119730534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_119591060_119671874_119671988_119729233_119729470_119729847
transcript_64346.known	chr4	+	1359	3	FSM	ENSMUSG00000028634.18	ENSMUST00000136547.2	1359	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATGCATTATTATTACCA	NA	False	NA	NA	False	ATTAAA	-32	NA	119671551	119730534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_119671988_119729233_119729470_119729847
transcript_64350.known	chr4	+	1536	5	FSM	ENSMUSG00000000085.17	ENSMUST00000136801.8	1536	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	26.8735464723211	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGTGTCTTTTTAACCAG	NA	False	NA	12	True	AATAAA	-14	NA	120374822	120387381	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_120374904_120379651_120379847_120382194_120382261_120385352_120385496_120386330
transcript_64351.nnic	chr4	+	1456	5	NNC	ENSMUSG00000000085.17	novel	1536	5	NA	NA	-35	-1	intron_retention	FALSE	canonical	0	0	junction_4	31.5465925259766	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCGTGTCTTTTTAACCA	NA	False	NA	11	True	AATAAA	-13	NA	120374787	120387380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_120374904_120379651_120379847_120382194_120382261_120385352_120385496_120386444
transcript_64352.known	chr4	+	1776	2	FSM	ENSMUSG00000000085.17	ENSMUST00000153099.2	1776	2	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGAAAATGAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	120262577	120305929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_120262654_120304229
transcript_64355.known	chr4	-	2705	19	FSM	ENSMUSG00000028633.8	ENSMUST00000030381.8	2705	19	0	0	0	0	multi-exon	TRUE	canonical	3	663	junction_8	52.1791784782653	719	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGTGCTTTCTCTTGTC	NA	False	NA	-18	True	AATAAA	-14	NA	120427473	120397064	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_120397852_120398489_120398579_120399059_120399205_120399727_120399825_120399906_120399963_120400924_120401022_120402214_120402259_120404502_120404566_120405251_120405347_120406660_120406750_120410076_120410210_120411142_120411295_120415475_120415557_120415982_120416067_120418594_120418712_120419974_120420076_120422465_120422637_120424446_120424625_120427347
transcript_64362.known	chr4	-	2006	10	FSM	ENSMUSG00000032897.18	ENSMUST00000120779.8	2006	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_9	134.081235740792	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTGTCTGGGACATT	NA	False	NA	-1	True	AATAAA	-20	NA	120672909	120614634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625922_120626097_120630868_120630965_120636316_120636431_120638668_120638741_120647573_120647687_120672658
transcript_64364.nnic	chr4	-	2132	10	NNC	ENSMUSG00000032897.18	novel	2006	10	NA	NA	421	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_9	131.604720542752	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTGTCTGGGACATT	NA	False	NA	-1	True	AATAAA	-20	NA	120682460	120614634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625922_120626097_120630868_120630965_120636316_120636431_120638668_120638741_120647573_120647687_120682083
transcript_64366.nnic	chr4	-	1930	10	NNC	ENSMUSG00000032897.18	novel	2006	10	NA	NA	434	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_9	130.985815837507	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTGTCTGGGACATT	NA	False	NA	-1	True	AATAAA	-20	NA	120682447	120614634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625922_120626097_120630868_120630965_120636316_120636431_120638668_120638741_120647573_120647687_120682272
transcript_64370.known	chr4	-	1932	10	FSM	ENSMUSG00000032897.18	ENSMUST00000043429.12	1932	10	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_8	23.5424491839793	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTGTCTGGGACATT	NA	False	NA	-1	True	AATAAA	-20	NA	120682903	120614634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625922_120626097_120630868_120630965_120636316_120636431_120638668_120638741_120647573_120647687_120682726
transcript_64374.known	chr4	-	1996	2	FSM	ENSMUSG00000028629.10	ENSMUST00000030375.9	1996	2	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	0	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGATGTTTGTGTG	NA	False	NA	-9	True	AATAAA	-22	NA	120782202	120778392	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_120779894_120781707
transcript_64375.known	chr4	-	914	2	FSM	ENSMUSG00000028629.10	ENSMUST00000156836.2	914	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCCCCATCGCCACAAAAG	NA	False	NA	NA	False	NA	NA	NA	120782214	120779465	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_120779873_120781707
transcript_64377.known	chr4	-	2362	6	FSM	ENSMUSG00000064141.15	ENSMUST00000106280.8	2362	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	16.2898741554378	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACTGATTTACAGATTAG	6836	False	NA	NA	False	NA	NA	NA	120808896	120787333	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_120788704_120791529_120791629_120792263_120792391_120804485_120804767_120806528_120806758_120808640
transcript_64384.nnic	chr4	-	1004	4	NNC	ENSMUSG00000064141.15	novel	2362	6	NA	NA	-53	-3624	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	21.9241115365405	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACATCCTTGTTTGCTTGCT	6783	False	NA	NA	False	NA	NA	NA	120808949	120792127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_120792391_120804563_120804767_120806528_120806758_120808640
transcript_64385.known	chr4	-	2905	10	FSM	ENSMUSG00000032870.9	ENSMUST00000043200.8	2905	10	0	0	0	0	multi-exon	TRUE	canonical	3	186	junction_3	19.2841007882109	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTCGGCTGTCACTGTG	NA	False	NA	-2	True	AATAAA	-21	NA	120874444	120825513	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_120826862_120829086_120829404_120830289_120830456_120831582_120831690_120832568_120832651_120834147_120834235_120839323_120839403_120840303_120840390_120842391_120842526_120873945
transcript_64386.known	chr4	+	2924	32	FSM	ENSMUSG00000028626.6	ENSMUST00000030372.6	2924	32	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	8.6239508704552	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTTCTTGTGGATGAGG	NA	False	NA	21	True	AATAAA	-22	NA	120896581	120912519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_120896984_120898161_120898237_120899490_120899527_120899612_120899676_120900892_120900947_120901058_120901095_120901191_120901216_120901471_120901526_120901861_120901916_120902019_120902068_120902195_120902253_120902337_120902392_120902680_120902735_120903122_120903177_120903266_120903321_120903425_120903480_120906858_120906913_120907272_120907327_120907551_120907606_120908410_120908456_120908847_120908902_120909164_120909219_120909423_120909478_120909554_120909627_120909777_120909814_120909949_120909995_120910087_120910121_120910254_120910402_120910635_120910691_120910966_120911156_120911449_120911528_120911792
transcript_64388.known	chr4	-	3429	10	FSM	ENSMUSG00000043207.11	ENSMUST00000058754.9	3429	10	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_3	24.0005143977796	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCCTGGTGTTGGGTTTGA	NA	False	NA	-1	True	ATTAAA	-20	NA	120955438	120916433	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_120918418_120923010_120923155_120925906_120926012_120931669_120931855_120938368_120938511_120940017_120940171_120940505_120940623_120944505_120944593_120952748_120952896_120955073
transcript_64393.known	chr4	-	6242	8	FSM	ENSMUSG00000049878.14	ENSMUST00000056635.13	6242	8	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	23.3290569453457	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTTTACTCATAGAGTCT	6464	False	NA	-1	True	AATAAA	-18	NA	121072281	121003079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_121008220_121012052_121012195_121016388_121016526_121027814_121028018_121039802_121039936_121045411_121045494_121047300_121047456_121072031
transcript_64394.nic	chr4	-	3318	7	ISM	ENSMUSG00000049878.14	ENSMUST00000056635.13	6242	8	-32	6789	-32	-6789	5prime_fragment	FALSE	canonical	3	168	junction_3	17.3557547292598	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	6432	False	NA	NA	False	NA	NA	NA	121072313	121009868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_121012195_121016388_121016526_121027814_121028018_121039802_121039936_121045411_121045494_121047300_121047456_121072031
transcript_64400.known	chr4	-	2752	1	FSM	ENSMUSG00000049878.14	ENSMUST00000222814.2	2752	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	6464	False	NA	NA	False	NA	NA	NA	121072281	121069529	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_121069500_121072300
transcript_64401.known	chr4	-	2620	13	FSM	ENSMUSG00000028656.15	ENSMUST00000069533.12	2620	13	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_12	208.332399997909	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACCTGATGTTTTCAGTA	NA	False	NA	-7	True	AATAAA	-25	NA	122779704	122752839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766247_122779606
transcript_64402.nic	chr4	-	2750	13	NIC	ENSMUSG00000028656.15	novel	2737	13	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	137	junction_12	229.274580652399	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACCTGATGTTTTCAGTA	NA	False	NA	-7	True	AATAAA	-25	NA	122779853	122752839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766247_122779625
transcript_64403.known	chr4	-	2768	13	FSM	ENSMUSG00000028656.15	ENSMUST00000106257.10	2768	13	0	0	0	0	multi-exon	FALSE	canonical	3	357	junction_12	172.387322297462	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACCTGATGTTTTCAGTA	NA	False	NA	-7	True	AATAAA	-25	NA	122779849	122752839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779606
transcript_64404.known	chr4	-	2737	13	FSM	ENSMUSG00000028656.15	ENSMUST00000106255.8	2737	13	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_12	193.312139642945	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACCTGATGTTTTCAGTA	NA	False	NA	-7	True	AATAAA	-25	NA	122779837	122752839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779625
transcript_64406.nnic	chr4	+	1249	10	NNC	ENSMUSG00000028657.15	novel	2573	10	NA	NA	-15	-87	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	96.4254973708193	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGGTATCATTTTCAGT	NA	False	NA	16	True	AATAAA	-14	NA	122730019	122752784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_122730173_122737787_122737898_122738210_122738339_122739763_122739835_122742225_122742329_122747383_122747475_122748172_122748272_122749598_122749671_122751302_122751478_122752537
transcript_64407.known	chr4	+	2381	9	FSM	ENSMUSG00000028657.15	ENSMUST00000030412.11	2381	9	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_2	20.6579282601136	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTCTGTATAATTTTAAG	NA	False	NA	103	True	ACTAAA	-25	NA	122730034	122752871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_122730173_122737787_122737898_122738210_122738339_122739763_122739835_122742225_122742329_122747383_122747475_122748172_122748272_122749598_122749671_122751302
transcript_6441.known	chr10	+	347	3	FSM	ENSMUSG00000019970.16	ENSMUST00000141218.8	347	3	0	0	0	0	multi-exon	FALSE	canonical	3	717	junction_1	108.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGGGGTTAGTCAAGGCAG	NA	False	NA	NA	False	TATAAA	-18	NA	21870581	21871500	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_21870725_21870864_21870941_21871372
transcript_64418.known	chr4	+	1191	6	FSM	ENSMUSG00000028657.15	ENSMUST00000097902.5	1191	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	114.376571027462	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTGTTGTTGTTGTT	NA	False	NA	NA	False	TTTAAA	-37	NA	122730046	122744052	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_122730173_122737787_122737898_122738210_122738339_122739763_122739835_122742225_122742329_122743399
transcript_64420.known	chr4	+	986	5	FSM	ENSMUSG00000028657.15	ENSMUST00000121870.8	986	5	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_2	15.8015030930605	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCTCGATGTAGTGGTAG	NA	False	NA	NA	False	AATAAA	-32	NA	122730038	122742768	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_122730173_122737787_122737898_122738210_122738339_122739763_122739835_122742225
transcript_64425.known	chr4	-	2151	14	FSM	ENSMUSG00000028655.12	ENSMUST00000030408.12	2151	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.06587742004239	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGCTTCTATTTGTG	9706	False	NA	NA	False	CATAAA	-16	NA	122854981	122840642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_122841098_122842324_122842502_122842593_122842738_122843059_122843173_122843271_122843356_122843944_122844029_122844206_122844329_122844453_122844545_122844983_122845142_122845581_122845661_122845782_122845922_122850524_122850650_122853062_122853195_122854733
transcript_64426.known	chr4	+	3293	3	FSM	ENSMUSG00000028654.14	ENSMUST00000106252.9	3293	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	34.5	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGAGTGGGGGTAGCAT	3471	False	NA	NA	False	AATAAA	-18	NA	122889736	122896278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_122889944_122890306_122890812_122893697
transcript_64430.nnic	chr4	+	1218	4	NIC	ENSMUSG00000028653.17	novel	1964	10	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	49.4592986426438	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCATGCTGCATTGTCAAT	NA	False	NA	26	True	AATAAA	-30	NA	122910381	122948742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_122910577_122943269_122943348_122946276_122946395_122947915
transcript_64431.known	chr4	+	2074	11	FSM	ENSMUSG00000028653.17	ENSMUST00000102649.4	2074	11	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_3	10.336343647538	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCATGCTGCATTGTCAAT	NA	False	NA	26	True	AATAAA	-30	NA	122910389	122948742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_122910577_122933238_122933380_122937505_122937605_122938283_122938430_122940667_122940811_122942561_122942674_122942944_122943058_122943269_122943348_122945858_122945969_122946276_122946395_122947915
transcript_64432.known	chr4	+	1964	10	FSM	ENSMUSG00000028653.17	ENSMUST00000147165.8	1964	10	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_8	29.573929126016	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCATGCTGCATTGTCAAT	NA	False	NA	26	True	AATAAA	-30	NA	122910389	122948742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_122910577_122933238_122933380_122937505_122937605_122938283_122938430_122940667_122940811_122942561_122942674_122942944_122943058_122943269_122943348_122946276_122946395_122947915
transcript_64433.known	chr4	-	1188	10	FSM	ENSMUSG00000028651.13	ENSMUST00000030404.5	1188	10	0	0	0	0	multi-exon	TRUE	canonical	3	832	junction_9	90.3078411481501	2227	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTGCCTCCTGCAAGTTG	NA	False	NA	-14	True	AATAAA	-25	NA	123033744	123020907	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123029471_123030664_123030692_123031318_123031363_123032658_123032758_123033694
transcript_64434.known	chr4	+	532	2	FSM	ENSMUSG00000083720.2	ENSMUST00000118690.2	532	2	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTTATCCAAAAAGCCAAT	NA	False	NA	NA	False	NA	NA	NA	123151838	123152697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_123152121_123152447
transcript_64435.known	chr4	+	3111	14	FSM	ENSMUSG00000011257.20	ENSMUST00000106243.8	3111	14	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_10	102.125111806737	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACAGGGTTTCTCTGTG	NA	False	NA	9	True	AATAAA	-23	NA	123176617	123192718	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_123177601_123180472_123180667_123182751_123182868_123183991_123184132_123184663_123184759_123185525_123185664_123186656_123186753_123188364_123188638_123188785_123188874_123188994_123189115_123189722_123189851_123191471_123191566_123191653_123191887_123192305
transcript_64436.known	chr4	-	1760	1	FSM	ENSMUSG00000076436.2	ENSMUST00000102640.2	1760	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGTATGTCCTGTCCCTA	NA	False	NA	NA	False	ATTAAA	-14	NA	123217427	123215667	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_123215700_123217400
transcript_64439.nnic	chr4	-	598	2	NNC	ENSMUSG00000028649.22	novel	17331	93	NA	NA	-2937	-144856	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAAGGAAGCCTACTGCC	NA	False	NA	NA	False	NA	NA	NA	123581090	123577528	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_123578035_123580998
transcript_64443.nnic	chr4	+	533	3	NNC	ENSMUSG00000087307.2	novel	678	3	NA	NA	-2795	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_2	3	170	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCCAGCCGCCTTTTATT	NA	False	NA	NA	False	NA	NA	NA	123556878	123562520	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_123557174_123561406_123561541_123562416
transcript_64445.nnic	chr4	+	489	3	NNC	ENSMUSG00000087307.2	novel	678	3	NA	NA	-2726	-163	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	12.5	52	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATGTTTCTGGTCATTAT	NA	False	NA	NA	False	NA	NA	NA	123556947	123564840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_123557174_123561406_123561541_123564711
transcript_64446.nnic	chr4	+	728	3	NNC	ENSMUSG00000087307.2	novel	431	2	NA	NA	-2795	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	12.5	264	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGACCATTGTGGTTCAC	NA	False	NA	9	True	NA	NA	NA	123556878	123565010	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_123557174_123561406_123561541_123564711
transcript_64447.nnic	chr4	+	820	3	NNC	ENSMUSG00000087307.2	novel	431	2	NA	NA	-2742	145	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	12.5	171	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATCAAACCTCATTGGGCA	NA	False	NA	NA	False	GATAAA	-25	NA	123556931	123565155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_123557174_123561406_123561541_123564711
transcript_64450.known	chr4	+	431	2	FSM	ENSMUSG00000087307.2	ENSMUST00000138861.2	431	2	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGACCATTGTGGTTCAC	NA	False	NA	9	True	NA	NA	NA	123561408	123565010	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_123561541_123564711
transcript_64453.nnic	chr4	-	488	3	NNC	ENSMUSG00000028648.14	novel	525	3	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_2	1049	1481	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGCTTTTGGGTCA	1846	False	NA	-25	True	AATAAA	-17	NA	123611981	123606502	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_123606720_123609656_123609852_123611905
transcript_64455.known	chr4	-	599	3	FSM	ENSMUSG00000028648.14	ENSMUST00000106206.8	599	3	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	1021.5	4579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGCTTTTGGGTCA	1848	False	NA	-25	True	AATAAA	-17	NA	123611979	123606502	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_123606720_123609656_123609875_123611815
transcript_64458.known	chr4	+	1217	8	FSM	ENSMUSG00000043333.13	ENSMUST00000053202.12	1217	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	8.27092275778864	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAACCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	123681667	123723697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_123681765_123703706_123703970_123708035_123708185_123711656_123711770_123716549_123716651_123718653_123718715_123720630_123720693_123723326
transcript_64461.known	chr4	+	210	3	FSM	ENSMUSG00000028647.14	ENSMUST00000147340.2	210	3	0	0	0	0	multi-exon	FALSE	canonical	3	327	junction_1	8.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTTATTTATTCACATA	NA	False	NA	NA	False	AGTAAA	-17	NA	123798833	123803516	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_123798881_123799026_123799100_123803426
transcript_64462.known	chr4	+	500	4	FSM	ENSMUSG00000028647.14	ENSMUST00000137685.2	500	4	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_3	24.8596057893121	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATCCACTCATCACACTT	NA	False	NA	5	True	TATAAA	-13	NA	123798928	123805035	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_123799100_123803426_123803476_123803629_123803760_123804885
transcript_64463.known	chr4	+	2593	7	FSM	ENSMUSG00000028646.17	ENSMUST00000030399.7	2593	7	0	0	0	0	multi-exon	FALSE	canonical	3	488	junction_1	23.3553467587664	301	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTGTTGTGTGATGTGT	NA	False	NA	20	True	AATAAA	-20	NA	123811238	123830790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_123811561_123813641_123813846_123814743_123814944_123817752_123817868_123818539_123818683_123823624_123823774_123829330
transcript_64468.known	chr4	-	1603	8	FSM	ENSMUSG00000028907.8	ENSMUST00000030738.8	1603	8	0	0	0	0	multi-exon	FALSE	canonical	3	1259	junction_4	134.593264834372	5053	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATCCTTGTGTGTGTGTG	NA	False	NA	NA	False	TATAAA	-16	NA	124587393	124571952	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_124572780_124573494_124573606_124575985_124576117_124576205_124576300_124577027_124577142_124577545_124577649_124579881_124579944_124587232
transcript_64469.known	chr4	-	4008	6	FSM	ENSMUSG00000028907.8	ENSMUST00000153088.2	4008	6	0	0	0	0	multi-exon	FALSE	canonical	3	1343	junction_1	127.692443002709	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTTTTGTAATCATGACT	NA	False	NA	NA	False	NA	NA	NA	124587327	124572589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_124572780_124573494_124576117_124576205_124577142_124577545_124577649_124579881_124579944_124587232
transcript_64470.known	chr4	+	1664	6	FSM	ENSMUSG00000032643.13	ENSMUST00000038684.6	1664	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1.93907194296653	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGGGCCCCGTGTATTTG	NA	False	NA	4	True	AATAAA	-15	NA	124594512	124602404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_124594645_124599405_124599583_124599676_124599852_124601046_124601217_124601309_124601524_124601608
transcript_64476.known	chr4	+	1820	17	FSM	ENSMUSG00000028902.5	ENSMUST00000030734.5	1820	17	0	0	0	0	multi-exon	FALSE	canonical	3	1027	junction_12	104.342509913266	4824	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTATGAATTTTTTGTT	NA	False	NA	51	True	AATAAA	-38	NA	124608568	124626253	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_124608784_124609061_124609110_124609444_124609498_124609602_124609709_124610243_124610317_124612120_124612213_124615816_124615900_124616670_124616810_124617463_124617533_124618551_124618620_124618867_124618976_124620771_124620842_124621866_124622032_124622111_124622223_124623251_124623343_124625163_124625220_124625980
transcript_64477.known	chr4	+	788	6	FSM	ENSMUSG00000028902.5	ENSMUST00000154712.2	788	6	0	0	0	0	multi-exon	FALSE	canonical	3	1208	junction_5	48.8630739925355	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAGAAAAAAAAAGAA	NA	False	NA	NA	False	AAGAAA	-33	NA	124608675	124612520	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_124608784_124609061_124609110_124609444_124609498_124609602_124609709_124610243_124610317_124612120
transcript_64478.known	chr4	+	3809	24	FSM	ENSMUSG00000028894.19	ENSMUST00000094782.10	3809	24	0	0	0	0	multi-exon	FALSE	non_canonical	1	6	junction_2	64.214933278441	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGGTTCTCTCTTTTTTT	NA	False	NA	22	True	AATATA	-30	NA	124635642	124695304	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_124635710_124636256_124636384_124636728_124636824_124637428_124637527_124637666_124637697_124639864_124639976_124645104_124645486_124671133_124671231_124674163_124674332_124676182_124676285_124677680_124677796_124678103_124678221_124678965_124679154_124680310_124680423_124681264_124681375_124682861_124682998_124685298_124685410_124685985_124686149_124686966_124687203_124689148_124689263_124691617_124691703_124692044_124692173_124693560_124693673_124694498
transcript_6448.known	chr10	-	617	2	FSM	ENSMUSG00000097327.8	ENSMUST00000181677.2	617	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCCTGGGACCCCTAATG	NA	False	NA	NA	False	NA	NA	NA	22024509	21993260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_21993756_22024387
transcript_64480.known	chr4	+	7631	11	FSM	ENSMUSG00000028890.14	ENSMUST00000030723.3	7631	11	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_5	11.1103555298649	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGTCACAGTCCAGCCAC	319	False	NA	NA	False	NA	NA	NA	124696341	124743593	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_124696437_124698452_124698909_124713997_124714237_124715020_124715153_124718079_124718154_124718838_124718976_124724911_124724990_124731490_124731594_124732111_124732711_124736320_124736385_124737939
transcript_64484.known	chr4	+	1634	5	FSM	ENSMUSG00000028889.18	ENSMUST00000102628.11	1634	5	0	0	0	0	multi-exon	FALSE	canonical	3	475	junction_1	43.7121264639459	1264	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTAAATGGTTTATTTTT	1534	False	NA	43	True	ATTAAA	-18	NA	124744471	124749035	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_124744960_124745485_124745601_124745692_124745813_124747666_124747810_124748267
transcript_64492.nic	chr4	+	868	3	ISM	ENSMUSG00000028890.14	ENSMUST00000138807.8	636	4	11	14846	11	3	5prime_fragment	FALSE	canonical	1	3	junction_1	0	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAATTCATGTTTATACTG	330	False	NA	7	True	AATAAA	-18	NA	124696352	124699174	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_124696437_124697077_124697140_124698452
transcript_64495.known	chr4	-	968	3	FSM	ENSMUSG00000078570.11	ENSMUST00000106190.10	968	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	88.5	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGACCTTTCTTTTCTG	7576	False	NA	-2	True	ATTAAA	-21	NA	124744602	124743277	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_124743756_124744024_124744227_124744314
transcript_64496.known	chr4	-	761	3	FSM	ENSMUSG00000078570.11	ENSMUST00000125776.8	761	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_2	71	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTGACCTTTCTTTTCT	7724	False	NA	-3	True	ATTAAA	-20	NA	124744454	124743278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_124743756_124744024_124744227_124744372
transcript_64497.known	chr4	-	1223	3	FSM	ENSMUSG00000078570.11	ENSMUST00000185036.2	1223	3	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	68	451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTGACTGACCTTTCTT	7189	False	NA	-7	True	ATTAAA	-16	NA	124744989	124743282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_124743756_124744024_124744227_124744441
transcript_6450.known	chr10	+	1579	9	FSM	ENSMUSG00000053219.16	ENSMUST00000181645.8	1579	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	39.8708853676464	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTGCTCCAGAAGTTT	NA	False	NA	5	True	AATAAA	-15	NA	22034467	22059816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_22034618_22047902_22048001_22049079_22049150_22049774_22049866_22050191_22050310_22056516_22056772_22057023_22057288_22057844_22058015_22059453
transcript_64500.known	chr4	+	781	2	FSM	ENSMUSG00000028890.14	ENSMUST00000147452.2	781	2	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	0	487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTGAATTCATGTTTATA	352	False	NA	4	True	AATAAA	-15	NA	124696374	124699171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_124696437_124698452
transcript_64501.known	chr4	-	1251	1	FSM	ENSMUSG00000078570.11	ENSMUST00000184704.2	1251	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTCAAATAAAACTATTTG	8055	False	NA	NA	False	AATAAA	-17	NA	124744123	124742872	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_124742900_124744100
transcript_64507.known	chr4	+	1203	3	FSM	ENSMUSG00000044730.18	ENSMUST00000233530.2	1203	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	13	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTCTGTTTTCTGCTTTT	NA	False	NA	NA	False	AAGAAA	-26	NA	124830850	124833247	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_124830884_124830971_124831127_124832232
transcript_64509.known	chr4	-	1626	10	FSM	ENSMUSG00000028873.17	ENSMUST00000084296.10	1626	10	0	0	0	0	multi-exon	FALSE	canonical	3	1430	junction_6	123.940846105444	5490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTCGGTCATCTGCATT	NA	False	NA	-10	True	AATAAA	-26	NA	124830710	124812257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_124812824_124813405_124813493_124814051_124814179_124815004_124815098_124815792_124815858_124817509_124817626_124820457_124820531_124824864_124824906_124830147_124830277_124830381
transcript_64510.known	chr4	-	1264	10	FSM	ENSMUSG00000028873.17	ENSMUST00000030690.12	1264	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	522.560032584124	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCTGTGCTTGAGTAGA	NA	False	NA	NA	False	TTTAAA	-3	NA	124830666	124812903	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_124813152_124813405_124813493_124814051_124814179_124815004_124815098_124815792_124815858_124817509_124817626_124820457_124820531_124824864_124824906_124830147_124830277_124830381
transcript_64512.known	chr4	+	2366	16	FSM	ENSMUSG00000028869.14	ENSMUST00000030684.8	2366	16	0	0	0	0	multi-exon	FALSE	canonical	3	650	junction_4	51.4673575083168	986	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAGGAACTGTGTTCGCTT	NA	False	NA	24	True	ATTAAA	-18	NA	124923784	124949169	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_124923988_124928030_124928116_124929007_124929103_124931314_124931455_124934729_124934915_124936406_124936474_124937357_124937517_124938016_124938131_124940038_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196_124946649_124947247_124947328_124947934_124948021_124948976
transcript_64513.known	chr4	+	2345	4	FSM	ENSMUSG00000050213.7	ENSMUST00000052183.7	2345	4	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	6.84754619472471	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAGAGGGTATTACTTTT	NA	False	NA	14	True	AATAAA	-20	NA	124960464	124967835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_124960746_124961882_124961986_124964899_124965484_124966458
transcript_64514.known	chr4	-	620	2	FSM	ENSMUSG00000086342.2	ENSMUST00000143705.2	620	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTTTTTGTGCATTGCT	NA	False	NA	NA	False	NA	NA	NA	124978740	124976649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_124976857_124978327
transcript_64519.known	chr4	+	872	6	FSM	ENSMUSG00000028863.14	ENSMUST00000055213.11	872	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_5	98.9605982196955	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGGCAGCTGCCTCTTT	NA	False	NA	40	True	ACTAAA	-16	NA	124978943	125003682	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125003369
transcript_64520.known	chr4	+	4550	7	FSM	ENSMUSG00000028863.14	ENSMUST00000154689.8	4550	7	0	0	0	0	multi-exon	TRUE	canonical	3	173	junction_5	63.7427555796648	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAACTGCTGATACTGAAAT	NA	False	NA	NA	False	NA	NA	NA	124978926	125007031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125002115_125002150_125003091
transcript_64521.known	chr4	+	1054	8	FSM	ENSMUSG00000028863.14	ENSMUST00000184205.8	1054	8	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_6	102.612805025016	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTGCCATTCTCTTGTTT	NA	False	NA	-10	True	NA	NA	NA	124978956	125003507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125001444_125001503_125002115_125002150_125003091
transcript_64522.nic	chr4	-	875	2	ISM	ENSMUSG00000042677.8	ENSMUST00000036188.8	2755	6	-78	7937	-78	-6266	5prime_fragment	FALSE	canonical	3	13	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTCTTTGCCTGGAGTGT	NA	False	NA	NA	False	GATAAA	-24	NA	125021711	125020152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_125020876_125021559
transcript_64523.known	chr4	-	2755	6	FSM	ENSMUSG00000042677.8	ENSMUST00000036188.8	2755	6	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_5	0.748331477354788	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATTGCCAGTCGTTTTGA	NA	False	NA	NA	False	AAGAAA	-7	NA	125021633	125012215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_125013938_125014118_125014226_125014664_125014900_125016046_125016187_125020398_125020876_125021559
transcript_64550.known	chr4	+	937	8	FSM	ENSMUSG00000028861.14	ENSMUST00000030675.8	937	8	0	0	0	0	multi-exon	FALSE	canonical	3	1282	junction_7	51.9186962510439	7964	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGAATGATGGAAGATGG	NA	False	NA	27	True	AATAAA	-12	NA	125940717	125949325	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_125940993_125941226_125941272_125942427_125942507_125944272_125944322_125945117_125945203_125947292_125947352_125948753_125948946_125949172
transcript_64551.known	chr4	+	1473	11	FSM	ENSMUSG00000042616.9	ENSMUST00000143712.3	1473	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	9.32148056909416	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCTTCCCCATTATTCTC	2402	False	NA	7	True	AATATA	-17	NA	125952396	125982457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_125952586_125958742_125958773_125967597_125967753_125970509_125970678_125971128_125971210_125976674_125976779_125977388_125977518_125978185_125978256_125980335_125980476_125981498_125981563_125982114
transcript_64552.known	chr4	+	5013	10	FSM	ENSMUSG00000042616.9	ENSMUST00000035497.5	5013	10	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_8	4.26296135405575	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGTGAGTCGGTGAT	2363	False	NA	NA	False	AATAAA	-15	NA	125952357	125985988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_125952586_125967597_125967753_125970509_125970678_125971128_125971210_125976674_125976779_125977388_125977518_125978185_125978256_125980335_125980476_125981498_125981563_125982114
transcript_64555.known	chr4	-	393	1	FSM	ENSMUSG00000079942.6	ENSMUST00000116058.3	393	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1485	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCCACACCCCGGAAGCAA	NA	False	NA	NA	False	NA	NA	NA	125964052	125963659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_125963700_125964100
transcript_64556.known	chr4	+	429	2	FSM	ENSMUSG00000042616.9	ENSMUST00000129968.2	429	2	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCAGACCTTCCCCATTA	NA	False	NA	2	True	AATATA	-12	NA	125981471	125982452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_125981563_125982114
transcript_64558.known	chr4	+	352	2	FSM	ENSMUSG00000050188.9	ENSMUST00000151831.2	352	2	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	0	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGCAGCAGCTGCAGATC	NA	False	NA	NA	False	NA	NA	NA	125990452	125991925	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_125990501_125991621
transcript_64559.known	chr4	+	943	2	FSM	ENSMUSG00000050188.9	ENSMUST00000055575.8	943	2	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_1	0	1452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTGTGCCTGATGCCCTG	NA	False	NA	30	True	CATAAA	-21	NA	125990415	125992377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_125990603_125991621
transcript_64560.known	chr4	+	1689	3	FSM	ENSMUSG00000050212.5	ENSMUST00000052876.3	1689	3	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	143	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCAGTCTCTCACTGGTTA	6342	False	NA	20	True	AATGAA	-15	NA	126041536	126043667	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_126042425_126042676_126042839_126043028
transcript_64562.nnic	chr4	+	1008	2	NIC	ENSMUSG00000050212.5	novel	1144	2	NA	NA	251	0	combination_of_known_splicesites	FALSE	canonical	3	57	junction_1	0	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGGCGACTCAGTCTCT	6852	False	NA	11	True	AATGAA	-6	NA	126042046	126043658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_126042425_126043028
transcript_64563.known	chr4	-	2384	16	FSM	ENSMUSG00000073758.11	ENSMUST00000097891.4	2384	16	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	4.1505019776729	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCAGTCTGGTCCTTGTGG	1138	False	NA	0	True	AGTAAA	-21	NA	126057284	126044394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_126044590_126044669_126044728_126044809_126045667_126045816_126045912_126045998_126046052_126046133_126046228_126054260_126054304_126055127_126055215_126055315_126055417_126055527_126055574_126055760_126055817_126055968_126056060_126056245_126056365_126056594_126056659_126056758_126056917_126057017
transcript_64568.known	chr4	-	1859	12	FSM	ENSMUSG00000073758.11	ENSMUST00000094760.9	1859	12	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	4.41260403618604	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCAGTCTGGTCCTTGTGG	2003	False	NA	0	True	AGTAAA	-21	NA	126056419	126044394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_126044590_126044669_126044728_126044809_126045667_126045816_126045912_126045998_126046052_126046133_126046228_126054260_126054304_126055127_126055215_126055315_126055417_126055527_126055574_126055760_126055817_126056245
transcript_64572.nic	chr4	-	4418	12	NIC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	-42	0	combination_of_known_junctions	FALSE	canonical	3	517	junction_11	115.160039556887	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGACTGTGTTTGTTGCTTG	6722	False	NA	-3	True	AATAAA	-28	NA	126096505	126057874	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126071654_126072351_126073704_126074608_126080227_126080382_126088109_126088198_126096362
transcript_64576.known	chr4	-	4378	11	FSM	ENSMUSG00000043962.17	ENSMUST00000080919.12	4378	11	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_10	137.634443363571	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGACTGTGTTTGTTGCTTG	6674	False	NA	-3	True	AATAAA	-28	NA	126096553	126057874	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126071654_126072351_126073704_126074608_126080227_126080382_126096362
transcript_6458.nnic	chr10	+	1405	8	NIC	ENSMUSG00000053219.16	novel	1579	9	NA	NA	-58	-131	combination_of_known_splicesites	FALSE	canonical	3	10	junction_1	37.3625371685793	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAACACATTTTAAAATG	NA	False	NA	NA	False	AATAAA	-24	NA	22034409	22059682	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_+_22034618_22049079_22049150_22049774_22049866_22050191_22050310_22056516_22056772_22057023_22057288_22057844_22058015_22059453
transcript_64586.nnic	chr4	-	1839	5	NNC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	-42	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_2	325.07797141609	422	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGACTGTGTTTGTTGCTTG	6722	False	NA	-3	True	AATAAA	-28	NA	126096505	126057874	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_126059411_126060723_126060756_126080341_126080382_126088109_126088198_126096362
transcript_6459.nnic	chr10	+	1539	8	NIC	ENSMUSG00000053219.16	novel	1579	9	NA	NA	-58	0	combination_of_known_splicesites	FALSE	canonical	3	10	junction_1	37.3625371685793	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTGCTCCAGAAGTTT	NA	False	NA	5	True	AATAAA	-15	NA	22034409	22059816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_+_22034618_22049079_22049150_22049774_22049866_22050191_22050310_22056516_22056772_22057023_22057288_22057844_22058015_22059453
transcript_64591.nnic	chr4	-	1733	4	NNC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_2	360.371413344005	419	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGACTGTGTTTGTTGCTTG	6740	False	NA	-3	True	AATAAA	-28	NA	126096487	126057874	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_126059411_126060723_126060756_126080341_126080382_126096362
transcript_64596.nic	chr4	-	2426	4	NIC	ENSMUSG00000043962.17	novel	339	5	NA	NA	-42	0	intron_retention	FALSE	canonical	3	517	junction_3	151.240059361122	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAGTATCCTAAATAACTT	6722	False	NA	NA	False	AGTAAA	-12	NA	126096505	126072566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_126074608_126080227_126080382_126088109_126088198_126096362
transcript_64599.known	chr4	-	2238	3	FSM	ENSMUSG00000043962.17	ENSMUST00000151728.2	2238	3	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_2	228	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAGTATCCTAAATAACTT	6822	False	NA	NA	False	AGTAAA	-12	NA	126096405	126072566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_126074608_126080227_126080382_126096362
transcript_646.known	SIRV6	+	485	4	FSM	SIRV6A	SIRV609	485	4	0	0	0	0	multi-exon	FALSE	canonical	3	15063	junction_3	5493.41668626083	11388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACAAGTCAAGCCATTGC	NA	False	NA	NA	False	NA	NA	NA	1137	2120	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845
transcript_64601.known	chr4	-	590	2	FSM	ENSMUSG00000043962.17	ENSMUST00000124327.2	590	2	0	0	0	0	multi-exon	FALSE	canonical	3	517	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTGTAAGTACTCTTAAC	6764	False	NA	NA	False	NA	NA	NA	126096463	126087708	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_126088198_126096362
transcript_64603.nnic	chr4	+	1278	5	NNC	ENSMUSG00000028847.9	novel	1336	5	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	162.187391618461	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTCCTGTTTTCCTTCT	7609	False	NA	45	True	AATAAA	-25	NA	126156101	126169676	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_126156257_126166470_126166569_126166767_126166868_126167682_126167866_126168934
transcript_64605.known	chr4	+	1336	5	FSM	ENSMUSG00000028847.9	ENSMUST00000030660.9	1336	5	0	0	0	0	multi-exon	FALSE	canonical	3	345	junction_3	21.2882009573378	1013	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTCCTGTTTTCCTTCT	7625	False	NA	45	True	AATAAA	-25	NA	126156117	126169676	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_126156331_126166470_126166569_126166767_126166868_126167682_126167866_126168934
transcript_64607.known	chr4	-	1672	6	FSM	ENSMUSG00000042558.17	ENSMUST00000102617.5	1672	6	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_3	41.9218320210365	547	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATGTCCTGTTCCTGTCTC	7076	False	NA	NA	False	AATAAA	-20	NA	126215496	126209839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_126210659_126211095_126211197_126211512_126211698_126211776_126211985_126212191_126212289_126215234
transcript_64608.nic	chr4	-	1675	11	NIC	ENSMUSG00000028845.16	novel	1542	11	NA	NA	-38	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_7	3.61247837363769	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGGCTCTTTTCTGCTAC	3306	False	NA	NA	False	AATAAA	-15	NA	126219266	126215913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_126216213_126216364_126216445_126216612_126216757_126216912_126217021_126217149_126217265_126217431_126217576_126218022_126218229_126218386_126218513_126218595_126218802_126218926_126218997_126219089
transcript_64611.nic	chr4	-	1515	9	ISM	ENSMUSG00000028845.16	ENSMUST00000030658.13	1492	10	104	-2	104	0	3prime_fragment	FALSE	canonical	2	5	junction_7	3.35410196624968	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGGCTCTTTTCTGCTAC	3684	False	NA	NA	False	AATAAA	-15	NA	126218888	126215913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_126216213_126216364_126216445_126216612_126216757_126216912_126217021_126217149_126217265_126217431_126217576_126218022_126218229_126218386_126218513_126218595
transcript_64614.nic	chr4	-	805	2	ISM	ENSMUSG00000028845.16	ENSMUST00000030658.13	1492	10	2122	-2	2122	0	intron_retention	FALSE	canonical	3	16	junction_1	0	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGGCTCTTTTCTGCTAC	5702	False	NA	NA	False	AATAAA	-15	NA	126216870	126215913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_126216213_126216364
transcript_64618.nic	chr4	-	1335	7	NIC	ENSMUSG00000028842.16	novel	625	4	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_2	7.32006375199925	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATCATTGTCCTTTCATAA	2355	False	NA	NA	False	ATTAAA	-18	NA	126323358	126269470	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_126269734_126270699_126270835_126296957_126297095_126297997_126298207_126301534_126301656_126311020_126311193_126323060
transcript_64623.known	chr4	+	608	3	FSM	ENSMUSG00000042489.16	ENSMUST00000147675.2	608	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	24	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGGAGAAAGAGGAGAGAAC	NA	False	NA	NA	False	NA	NA	NA	126450787	126454079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_126450919_126453000_126453110_126453711
transcript_64624.known	chr4	+	5027	26	FSM	ENSMUSG00000042489.16	ENSMUST00000048391.15	5027	26	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	26.925794324402	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGTCCAGCTCTAGTG	NA	False	NA	30	True	AATAAA	-23	NA	126450727	126487696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_126450931_126453000_126453110_126453711_126454146_126455550_126455713_126457699_126457778_126458725_126458799_126459482_126459592_126459763_126460375_126466071_126466264_126466928_126467102_126468433_126468610_126468887_126468953_126469638_126469836_126470134_126470290_126471405_126471636_126472115_126472228_126474752_126474829_126475224_126475323_126479630_126479796_126479897_126480020_126481350_126481479_126484332_126484436_126484976_126485060_126485387_126485550_126486444_126486595_126486835
transcript_64634.known	chr4	+	859	6	FSM	ENSMUSG00000028837.9	ENSMUST00000030642.3	859	6	0	0	0	0	multi-exon	FALSE	canonical	3	3349	junction_3	129.102439945959	12030	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCTGGGTTTGGCCTTA	5380	False	NA	19	True	AATAAA	-21	NA	126571422	126603507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_126571639_126577914_126578038_126580821_126580893_126599850_126600014_126601346_126601397_126603271
transcript_64635.known	chr4	-	2085	7	FSM	ENSMUSG00000042477.8	ENSMUST00000048194.8	2085	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	0.471404520791032	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAAGTCCAGAACAA	NA	False	NA	NA	False	ATTAAA	-9	NA	126630033	126609798	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_126610589_126613204_126613347_126614278_126614398_126615647_126615871_126628392_126628445_126628962_126629446_126629757
transcript_64636.known	chr4	-	3681	7	FSM	ENSMUSG00000028833.14	ENSMUST00000030637.14	3681	7	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_6	31.1216252074913	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGGTCTGCCTTGCAC	NA	False	NA	-1	True	NA	NA	NA	126647202	126637542	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_126639065_126640338_126640482_126640888_126641114_126642270_126642513_126643677_126644647_126645733_126645875_126646763
transcript_64637.known	chr4	-	2375	7	FSM	ENSMUSG00000028833.14	ENSMUST00000127079.2	2375	7	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_6	61.3969326052477	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCCCAGCTTTCTGGCTTT	NA	False	NA	NA	False	NA	NA	NA	126647231	126638523	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_126639065_126640338_126640482_126640888_126641114_126642270_126642513_126643677_126644647_126645733_126645875_126647117
transcript_64639.nnic	chr4	+	716	3	NNC	ENSMUSG00000028830.15	novel	4073	24	NA	NA	0	-11692	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	7	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATTTGTAATTCATTTT	NA	False	NA	NA	False	AATAAA	-29	NA	126647336	126670435	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_126647456_126650691_126650862_126670008
transcript_64645.known	chr4	-	2982	8	FSM	ENSMUSG00000043872.15	ENSMUST00000106099.8	2982	8	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	144.172515708488	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAAACTTGCAACTTTGAG	NA	False	NA	NA	False	AATGAA	-11	NA	126954917	126941434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_126943406_126944356_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126952585_126952825_126953302_126953453_126954788
transcript_64647.known	chr4	-	3852	8	FSM	ENSMUSG00000043872.15	ENSMUST00000106102.9	3852	8	0	0	0	0	multi-exon	FALSE	canonical	3	376	junction_6	26.8206438918888	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATTAGAGGCCTAACT	NA	False	NA	NA	False	ACTAAA	-36	NA	126954945	126940886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126952585_126952825_126953302_126953453_126954788
transcript_6465.nnic	chr10	+	1534	7	NIC	ENSMUSG00000053219.16	novel	1579	9	NA	NA	-123	0	combination_of_known_splicesites	FALSE	canonical	1	5	junction_1	36.5957647822805	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTGCTCCAGAAGTTT	NA	False	NA	5	True	AATAAA	-15	NA	22034344	22059816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_+_22034618_22049774_22049866_22050191_22050310_22056516_22056772_22057023_22057288_22057844_22058015_22059453
transcript_64659.known	chr4	-	621	4	FSM	ENSMUSG00000043872.15	ENSMUST00000136186.2	621	4	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_3	174.76269624837	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAACTTTTGTAGCCAA	NA	False	NA	NA	False	NA	NA	NA	126954879	126948119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_126948176_126952585_126952825_126953302_126953453_126954703
transcript_64662.known	chr4	+	3465	10	FSM	ENSMUSG00000028820.14	ENSMUST00000030623.8	3465	10	0	0	0	0	multi-exon	FALSE	canonical	3	697	junction_1	123.17016233199	2613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGATTTCTTCCCAGTGT	NA	False	NA	26	True	AATAAA	-22	NA	126915116	126925029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_126916014_126916608_126916798_126917059_126917362_126917466_126917563_126919647_126919845_126919935_126920021_126920561_126920680_126921060_126921110_126921189_126921312_126923619
transcript_64663.known	chr4	+	925	10	FSM	ENSMUSG00000028820.14	ENSMUST00000146285.8	925	10	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_7	318.457392928962	608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTTTGTTCAAGTAGGA	NA	False	NA	18	True	AATAAA	-19	NA	126917319	126930806	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_126917362_126917466_126917563_126919647_126919845_126919935_126920021_126920561_126920680_126921060_126921110_126921189_126921312_126929600_126929648_126930355_126930443_126930724
transcript_64664.known	chr4	+	574	3	FSM	ENSMUSG00000085334.8	ENSMUST00000130659.8	574	3	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_2	16	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTTTGTTCAAGTAGGA	NA	False	NA	18	True	AATAAA	-19	NA	126929242	126930806	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_126929648_126930355_126930443_126930724
transcript_64665.known	chr4	-	3001	6	FSM	ENSMUSG00000043872.15	ENSMUST00000055013.10	3001	6	0	0	0	0	multi-exon	FALSE	canonical	3	391	junction_5	13.905394636615	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATCCTAATGAAGTTTTG	NA	False	NA	NA	False	ATTAAA	-20	NA	126952779	126941385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126952585
transcript_64668.nnic	chr4	+	1047	3	NNC	ENSMUSG00000070737.11	novel	1120	3	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	45	88	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTACTTCGTCCACT	NA	False	NA	7	True	TTTAAA	-4	NA	127019818	127023437	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_127019894_127021611_127021793_127022646
transcript_64669.known	chr4	+	1120	3	FSM	ENSMUSG00000070737.11	ENSMUST00000094712.5	1120	3	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_2	3.5	569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTACTTCGTCCACT	NA	False	NA	7	True	TTTAAA	-4	NA	127019838	127023437	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_127019987_127021611_127021793_127022646
transcript_6467.known	chr10	+	1274	7	FSM	ENSMUSG00000053219.16	ENSMUST00000065527.11	1274	7	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	14.8286509463568	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGTATGTGCTCCAGAAG	NA	False	NA	2	True	AATAAA	-12	NA	22049419	22059813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_22049436_22049774_22049866_22050191_22050310_22056516_22056772_22057023_22057288_22057844_22058015_22059453
transcript_64670.known	chr4	+	3115	9	FSM	ENSMUSG00000042408.14	ENSMUST00000151461.8	3115	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_8	32.0095200682547	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAATTGAG	2803	False	NA	NA	False	AATAAA	-33	NA	126971234	127001437	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_126972340_126980767_126980835_126982121_126982130_126986704_126986877_126994402_126994554_126995641_126995758_126997204_126997481_126998063_126998215_127000368
transcript_64672.nnic	chr4	+	726	4	NNC	ENSMUSG00000042388.15	novel	3884	12	NA	NA	2132	-13966	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	78.9866374071519	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGCACTTGGGAGGTGG	NA	False	NA	NA	False	NA	NA	NA	127090537	127094581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_127090690_127093465_127093672_127094056_127094130_127094286
transcript_64673.nnic	chr4	+	1237	3	NNC	ENSMUSG00000042388.15	novel	2901	10	NA	NA	-4296	-13966	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_2	82.5	25	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGCACTTGGGAGGTGG	NA	False	NA	NA	False	NA	NA	NA	127092802	127094581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_127093672_127094056_127094130_127094286
transcript_64674.known	chr4	+	1022	2	FSM	ENSMUSG00000042380.9	ENSMUST00000142029.2	1022	2	0	0	0	0	multi-exon	FALSE	canonical	3	445	junction_1	0	3691	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGGAGTCCTGCTCTCT	NA	False	NA	29	True	ATTAAA	-18	NA	127137576	127141602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_127137692_127140695
transcript_64675.known	chr4	-	1685	2	FSM	ENSMUSG00000050234.8	ENSMUST00000053753.8	1685	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGTGTGCACTGATGTT	NA	False	NA	0	True	AATAAA	-17	NA	127207832	127205213	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_127206779_127207712
transcript_64699.known	chr4	-	1623	2	FSM	ENSMUSG00000042367.13	ENSMUST00000106091.9	1623	2	0	0	0	0	multi-exon	FALSE	canonical	3	984	junction_1	0	2556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	-5	True	AATAAA	-17	NA	127222954	127219027	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_127220565_127222868
transcript_64700.known	chr4	-	1880	2	FSM	ENSMUSG00000042367.13	ENSMUST00000046532.4	1880	2	0	0	0	0	multi-exon	FALSE	canonical	3	980	junction_1	0	2713	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	-5	True	AATAAA	-17	NA	127224637	127219027	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_127220565_127224294
transcript_64701.known	chr4	-	1445	2	FSM	ENSMUSG00000046623.9	ENSMUST00000060419.2	1445	2	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	0	158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGTAGTCAGGCGGAGAA	4504	False	NA	-10	True	AATAAA	-17	NA	127247874	127244878	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_127246275_127247825
transcript_64703.known	chr4	-	1721	2	FSM	ENSMUSG00000042357.3	ENSMUST00000046498.3	1721	2	0	0	0	0	multi-exon	FALSE	canonical	3	573	junction_1	0	1234	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCAGAGGGGCCCTTCCTT	404	False	NA	NA	False	AATAAA	-16	NA	127251974	127248601	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_127250167_127251818
transcript_64708.nnic	chr4	+	589	4	Antisense	novelGene_ENSMUSG00000079998.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	5	junction_3	0.942809041582063	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGAGGCTAGCGCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	127302375	127308265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr4_+_127302541_127302789_127302952_127303602_127303687_127308087
transcript_64710.nnic	chr4	+	607	4	Antisense	novelGene_ENSMUSG00000079998.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_2	2.49443825784929	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGAGGCTAGCGCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	127302375	127308265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr4_+_127302541_127302789_127302970_127303602_127303687_127308087
transcript_64713.nnic	chr4	+	629	3	Antisense	novelGene_ENSMUSG00000079998.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	1.5	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGAGGCTAGCGCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	127302173	127308265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr4_+_127302541_127303602_127303687_127308087
transcript_64716.nnic	chr4	+	609	3	Antisense	novelGene_ENSMUSG00000079998.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	0.5	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAGAAGAAGAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	127302438	127318964	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr4_+_127302541_127311191_127311321_127318586
transcript_64722.nnic	chr4	+	512	3	NNC	ENSMUSG00000087470.3	novel	311	2	NA	NA	-30507	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTAAGTTTTAATGATTA	NA	False	NA	NA	False	ATTAAA	-17	NA	127338133	127370633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_127338358_127368663_127368744_127370425
transcript_64723.nnic	chr4	+	370	3	NNC	ENSMUSG00000087470.3	novel	311	2	NA	NA	-12955	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTAAGTTTTAATGATTA	NA	False	NA	NA	False	ATTAAA	-17	NA	127355685	127370633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_127355768_127368663_127368744_127370425
transcript_64724.known	chr4	+	579	2	FSM	ENSMUSG00000087470.3	ENSMUST00000143070.2	579	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTAAGTTTTAATGATTA	NA	False	NA	NA	False	ATTAAA	-17	NA	127368726	127370633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_127369098_127370425
transcript_64725.known	chr4	+	311	2	FSM	ENSMUSG00000087470.3	ENSMUST00000129084.8	311	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTAAGTTTTAATGATTA	NA	False	NA	NA	False	ATTAAA	-17	NA	127368640	127370633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_127368744_127370425
transcript_64727.known	chr4	-	5364	8	FSM	ENSMUSG00000061894.16	ENSMUST00000097877.9	5364	8	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	4.69041575982343	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGAACATTTTGTATTT	NA	False	NA	-6	True	NA	NA	NA	128503891	128477339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_128480638_128481808_128482238_128483244_128483935_128485265_128485351_128485608_128485686_128486127_128486300_128497997_128498506_128503786
transcript_64728.known	chr4	-	3323	2	FSM	ENSMUSG00000061894.16	ENSMUST00000151226.2	3323	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	128503827	128495223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_128498506_128503786
transcript_64730.known	chr4	-	2049	11	FSM	ENSMUSG00000028789.17	ENSMUST00000106068.8	2049	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	8.67698104181403	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTAAACCCTTCAGTG	NA	False	NA	NA	False	AATAAA	-18	NA	128856221	128825814	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_128826285_128828249_128828465_128839849_128839963_128841251_128841412_128842584_128842751_128843382_128843518_128844392_128844566_128853576_128853751_128855155_128855353_128855876_128855995_128856093
transcript_64734.known	chr4	-	1104	3	FSM	ENSMUSG00000028789.17	ENSMUST00000156739.2	1104	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	6	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCGGTTTCTCTCCAGATC	NA	False	NA	NA	False	ATTAAA	-20	NA	128856221	128854497	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_128855353_128855876_128855998_128856093
transcript_64741.known	chr4	+	1781	7	FSM	ENSMUSG00000028792.15	ENSMUST00000102604.11	1781	7	0	0	0	0	multi-exon	FALSE	canonical	3	1917	junction_3	122.234746833023	9746	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGTTGTGGAGTTTTTT	2869	False	NA	29	True	AATAAA	-19	NA	128887016	128905322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_128887230_128892926_128893053_128895943_128896055_128896166_128896262_128901505_128901579_128901826_128902023_128904355
transcript_64742.known	chr4	+	986	6	FSM	ENSMUSG00000028792.15	ENSMUST00000030583.13	986	6	0	0	0	0	multi-exon	FALSE	canonical	3	1917	junction_3	119.822535443046	574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCAGCACTCATCTATGT	2869	False	NA	22	True	ATTAAA	-26	NA	128887016	128902194	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_128887230_128892926_128893053_128895943_128896055_128896166_128896262_128901505_128901579_128901826
transcript_64743.nnic	chr4	-	1141	3	NNC	ENSMUSG00000085085.3	novel	1009	2	NA	NA	15	10	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	2	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTACACTTCTTGGCTC	NA	False	NA	-8	True	AATAAA	-26	NA	128951761	128943879	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_128944703_128944860_128944998_128951580
transcript_64745.known	chr4	-	1009	2	FSM	ENSMUSG00000085085.3	ENSMUST00000149472.3	1009	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCCCTTATGACTTACAC	NA	False	NA	-18	True	AATAAA	-16	NA	128951776	128943889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_128944703_128951580
transcript_64746.known	chr4	-	1666	3	FSM	ENSMUSG00000028785.14	ENSMUST00000095807.10	1666	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	0.5	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGTGGCCAGGGGAGGGC	NA	False	NA	0	True	AATAAA	-22	NA	129012760	129005362	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_129006319_129006467_129006574_129012156
transcript_64747.known	chr4	-	4059	9	FSM	ENSMUSG00000040928.16	ENSMUST00000072431.13	4059	9	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_6	67.6456761367643	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATATGTACTGTGGCCGTC	1151	False	NA	-5	True	AATAAA	-15	NA	129083372	129041797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129075634_129075759_129075894_129076001_129076326_129077393_129077511_129083334
transcript_64748.known	chr4	-	4084	9	FSM	ENSMUSG00000040928.16	ENSMUST00000106059.8	4084	9	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	66.0793793478722	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATATGTACTGTGGCCGTC	1003	False	NA	-5	True	AATAAA	-15	NA	129083520	129041797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129075634_129075759_129075894_129076124_129076326_129077393_129077511_129083334
transcript_64752.known	chr4	-	1126	7	FSM	ENSMUSG00000040928.16	ENSMUST00000117965.8	1126	7	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_6	80.2982288444493	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAAACAAGCGGAGCCACC	1218	False	NA	NA	False	NA	NA	NA	129083305	129044824	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129075634_129075759_129076326_129083164
transcript_64756.known	chr4	-	666	3	FSM	ENSMUSG00000040928.16	ENSMUST00000148920.8	666	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	92.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCGGTATTATTATTGTT	1153	False	NA	NA	False	NA	NA	NA	129083370	129044339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_129044885_129049217_129049303_129083334
transcript_64761.known	chr4	+	2909	13	FSM	ENSMUSG00000028811.13	ENSMUST00000106054.4	2909	13	0	0	0	0	multi-exon	FALSE	canonical	3	1466	junction_9	124.991221914003	1707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAAACACAGCTTTGTCA	713	False	NA	NA	False	AAAACA	-42	NA	129083552	129113400	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223
transcript_64773.known	chr4	-	5033	7	FSM	ENSMUSG00000050390.13	ENSMUST00000097873.10	5033	7	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_6	50.045534821356	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGACTGCTGTTTTCCA	NA	False	NA	0	True	ATTAAA	-28	NA	129132967	129113370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_129115271_129115607_129118110_129118190_129118305_129119144_129119266_129119499_129119556_129119635_129119807_129132798
transcript_64780.known	chr4	+	647	3	FSM	ENSMUSG00000028811.13	ENSMUST00000128287.2	647	3	0	0	0	0	multi-exon	FALSE	canonical	3	1802	junction_1	30	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACAAAAATATACTGGCTC	855	False	NA	NA	False	ATTAAA	-32	NA	129083694	129091234	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_129083866_129090622_129090770_129090905
transcript_64790.nnic	chr4	+	813	4	NNC	ENSMUSG00000087575.8	novel	412	2	NA	NA	-9367	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.816496580927726	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTTCTGCAGGTGTCAA	9430	False	NA	NA	False	NA	NA	NA	129146390	129158803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_129146584_129153889_129154064_129155723_129155906_129158539
transcript_64793.known	chr4	+	412	2	FSM	ENSMUSG00000087575.8	ENSMUST00000153817.8	412	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTTCTGCAGGTGTCAA	NA	False	NA	NA	False	NA	NA	NA	129155757	129158803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_129155906_129158539
transcript_64804.known	chr4	-	4407	12	FSM	ENSMUSG00000057236.11	ENSMUST00000102598.4	4407	12	0	0	0	0	multi-exon	TRUE	canonical	3	482	junction_1	226.647613038099	1013	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATATTTTATGTTTGA	2492	False	NA	-8	True	AATAAA	-7	NA	129229163	129200892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
transcript_64805.known	chr4	-	722	4	FSM	ENSMUSG00000057236.11	ENSMUST00000140291.2	722	4	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_1	460.816666365269	2898	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCCATGCTGGTGGGTT	3218	False	NA	-29	True	AATAAA	-14	NA	129228437	129203309	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_129203670_129216594_129216663_129222380_129222527_129228289
transcript_64814.known	chr4	+	618	6	FSM	ENSMUSG00000057572.16	ENSMUST00000106047.4	618	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	246.415421595321	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGTAGCAGTGGTCT	NA	False	NA	17	True	TTTAAA	-24	NA	129229839	129240826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_129229933_129235269_129235392_129235533_129235617_129236913_129236967_129238004_129238042_129240596
transcript_64820.known	chr4	-	2321	5	FSM	ENSMUSG00000028807.3	ENSMUST00000030610.3	2321	5	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_4	9.35414346693485	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTTCGTGACACTTTTA	NA	False	NA	0	True	AATAAA	-24	NA	129271909	129247420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_129248298_129251497_129251668_129253690_129254494_129263021_129263116_129271532
transcript_64823.known	chr4	+	3833	7	FSM	ENSMUSG00000057572.16	ENSMUST00000141235.8	3833	7	0	0	0	0	multi-exon	FALSE	canonical	3	561	junction_4	57.3866031598162	4425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCACTTCGTAAAAAATACAG	NA	False	NA	NA	False	ATTAAA	-19	NA	129229487	129243664	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_129229933_129234520_129234546_129235269_129235392_129235533_129235617_129236913_129236967_129238004_129238042_129240596
transcript_64824.known	chr4	+	527	6	FSM	ENSMUSG00000057572.16	ENSMUST00000119480.2	527	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	264.862530381328	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGTTTGAGAGGATGTGAT	NA	False	NA	-81	True	TTTAAA	-45	NA	129229804	129240728	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_129229933_129234520_129234546_129235269_129235392_129235533_129235617_129238004_129238042_129240596
transcript_64825.known	chr4	-	3323	4	FSM	ENSMUSG00000048485.13	ENSMUST00000106046.8	3323	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	3.09120616516523	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAGGAAGGAAGGAAGG	704	False	NA	NA	False	NA	NA	NA	129334646	129319557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_129321621_129322220_129322400_129326103_129327105_129334566
transcript_64826.known	chr4	+	2823	11	FSM	ENSMUSG00000040859.15	ENSMUST00000048162.10	2823	11	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_3	13.6088206689632	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGAAGTGTCCGGGGATGT	NA	False	NA	64	True	ATTAAA	-15	NA	129355373	129382291	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_129355499_129355734_129355796_129359022_129359140_129360615_129360784_129362786_129362842_129365719_129365836_129366216_129366286_129366490_129366570_129367567_129368039_129378829_129378934_129380833
transcript_64833.known	chr4	+	558	3	FSM	ENSMUSG00000078554.3	ENSMUST00000106043.3	558	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0.5	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGGGCTGGCCGTGTATG	2238	False	NA	NA	False	AATAAA	-25	NA	129384982	129385749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_129385129_129385207_129385355_129385484
transcript_64834.known	chr4	+	1605	2	FSM	ENSMUSG00000047945.7	ENSMUST00000062356.7	1605	2	0	0	0	0	multi-exon	FALSE	canonical	3	8029	junction_1	0	1024	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGAGTGGTCTTCTGGGGT	NA	False	NA	24	True	AATAAA	-24	NA	129407373	129409778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_129407710_129408509
transcript_64839.known	chr4	-	2038	14	FSM	ENSMUSG00000028800.16	ENSMUST00000102597.5	2038	14	0	0	0	0	multi-exon	FALSE	canonical	3	1463	junction_10	202.513203601978	4931	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCTGGTTGGTTTAAGTT	8808	False	NA	-5	True	AATAAA	-22	NA	129436506	129409896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_129410430_129410692_129410742_129411148_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
transcript_64841.known	chr4	-	2074	13	FSM	ENSMUSG00000000409.15	ENSMUST00000167288.8	2074	13	0	0	0	0	multi-exon	TRUE	canonical	3	4	junction_12	60.4484973620795	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTACTGCATACTTTATTT	NA	False	NA	5	True	NA	NA	NA	129452165	129442136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_129442794_129445297_129445430_129445509_129445664_129445740_129445818_129449331_129449512_129449645_129449799_129450080_129450231_129450436_129450541_129450826_129450926_129451157_129451249_129451418_129451501_129451873_129451984_129452080
transcript_64844.known	chr4	-	2185	12	FSM	ENSMUSG00000000409.15	ENSMUST00000067240.11	2185	12	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	59.1335510476424	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTTCTACTGCATACTT	NA	False	NA	0	True	NA	NA	NA	129452184	129442141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_129442794_129445297_129445430_129445509_129445664_129445740_129445818_129449331_129449512_129449645_129449799_129450080_129450231_129450436_129450541_129450826_129450926_129451157_129451249_129451418_129451501_129451873
transcript_64846.nnic	chr4	-	1820	7	NNC	ENSMUSG00000000409.15	novel	2185	12	NA	NA	-95	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	50.9825678268781	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTTCTACTGCATACTT	NA	False	NA	0	True	NA	NA	NA	129450347	129442141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_129442794_129445297_129445430_129445509_129445664_129445740_129445818_129449331_129449512_129449645_129449799_129449875
transcript_64849.nnic	chr4	-	1218	5	NNC	ENSMUSG00000000409.15	novel	2185	12	NA	NA	387	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	57.8575837725704	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTTCTACTGCATACTT	NA	False	NA	0	True	NA	NA	NA	129449254	129442141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_129442794_129445297_129445430_129445509_129445664_129445740_129445818_129449051
transcript_64852.known	chr4	-	1123	11	FSM	ENSMUSG00000028798.17	ENSMUST00000102593.11	1123	11	0	0	0	0	multi-exon	FALSE	canonical	3	822	junction_10	179.667915889287	12986	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGTGCAGCCTGTCTGT	6377	False	NA	0	True	AATAAA	-32	NA	129494441	129485752	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_129485928_129486059_129486153_129486789_129486864_129487134_129487225_129487318_129487430_129488851_129488980_129489056_129489207_129490666_129490733_129492747_129492836_129494201_129494295_129494386
transcript_64853.known	chr4	-	734	6	FSM	ENSMUSG00000028798.17	ENSMUST00000135055.8	734	6	0	0	0	0	multi-exon	FALSE	canonical	3	1356	junction_5	43.9881802306029	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGCCTCACTGCCCTCCT	6426	False	NA	NA	False	NA	NA	NA	129494392	129487318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_129487430_129488851_129488980_129489056_129489207_129490666_129490733_129492747_129492836_129494201
transcript_64856.known	chr4	-	1023	9	FSM	ENSMUSG00000078552.11	ENSMUST00000106037.3	1023	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.5612494995996	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTGGGAGCTCCAGATAC	NA	False	NA	NA	False	NA	NA	NA	129508047	129502540	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_129502637_129502874_129502979_129503407_129503535_129504008_129504049_129504123_129504271_129504701_129504834_129505055_129505133_129505561_129505614_129507799
transcript_64867.known	chr4	+	1366	7	FSM	ENSMUSG00000028797.21	ENSMUST00000129515.8	1366	7	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_3	321.763068456003	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGAAGAAAAGCATTAA	3164	False	NA	NA	False	NA	NA	NA	129494460	129501910	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_129494525_129494775_129495037_129495199_129495327_129495662_129495755_129495987_129496055_129500879_129500973_129501248
transcript_64889.known	chr4	+	875	6	FSM	ENSMUSG00000028797.21	ENSMUST00000151969.8	875	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	309.843831631356	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGGCGTGGTGGCGCACG	3183	False	NA	NA	False	NA	NA	NA	129494479	129501530	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_129494525_129494775_129495037_129495199_129495327_129495987_129496055_129500879_129500973_129501248
transcript_64894.known	chr4	+	680	6	FSM	ENSMUSG00000028797.21	ENSMUST00000172774.8	680	6	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_3	325.590786110418	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCCGACCGTCAGCTCTGC	3164	False	NA	NA	False	NA	NA	NA	129494460	129501351	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_129494525_129494775_129495037_129495662_129495755_129495987_129496055_129500879_129500973_129501248
transcript_6490.nnic	chr10	+	1197	7	NNC	ENSMUSG00000078452.11	novel	1271	7	NA	NA	-38	-134	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	16.5672032106274	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAACACATTTTAAAATG	NA	False	NA	NA	False	AATAAA	-24	NA	22237754	22249904	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_22237831_22238169_22238261_22238586_22238705_22246764_22247014_22247265_22247530_22248087_22248258_22249675
transcript_64905.known	chr4	-	744	6	FSM	ENSMUSG00000028795.16	ENSMUST00000151838.8	744	6	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	33.5535393066067	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTACTCGGTGCTCTCCTT	NA	False	NA	-4	True	ATTAAA	-14	NA	129517630	129513068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_129513240_129514249_129514273_129514475_129514647_129514776_129514944_129516392_129516581_129517606
transcript_64906.known	chr4	-	879	6	FSM	ENSMUSG00000028795.16	ENSMUST00000030586.15	879	6	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	6.82934843158555	857	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACTCGGTGCTCTCCTTGT	NA	False	NA	-2	True	ATTAAA	-16	NA	129517740	129513066	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_129513240_129514249_129514273_129514475_129514670_129514776_129514944_129516392_129516581_129517606
transcript_64909.known	chr4	+	449	5	FSM	ENSMUSG00000028797.21	ENSMUST00000181579.8	449	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	266.321703959704	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGGGCCAACCCCGACC	3177	False	NA	NA	False	NA	NA	NA	129494473	129501340	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_129494525_129494775_129494928_129495987_129496055_129500879_129500973_129501254
transcript_6491.nnic	chr10	+	1331	7	NNC	ENSMUSG00000078452.11	novel	1271	7	NA	NA	-38	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	16.5672032106274	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTGCTCCAGAAGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	22237754	22250038	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_22237831_22238169_22238261_22238586_22238705_22246764_22247014_22247265_22247530_22248087_22248258_22249675
transcript_64910.known	chr4	+	453	5	FSM	ENSMUSG00000028797.21	ENSMUST00000173758.8	453	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	300.683388300717	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGTGGATGCTGGGCCCA	3187	False	NA	NA	False	NA	NA	NA	129494483	129501375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_129494525_129494775_129494928_129496014_129496055_129500879_129500973_129501248
transcript_64914.known	chr4	+	1519	5	FSM	ENSMUSG00000028797.21	ENSMUST00000152126.8	1519	5	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_2	194.785779768442	766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAAGCTTAGCAAATGT	3196	False	NA	9	True	AATAAA	-9	NA	129494492	129502314	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_129494525_129494775_129495037_129495987_129496055_129500879_129500973_129501248
transcript_64916.known	chr4	+	1575	5	FSM	ENSMUSG00000028797.21	ENSMUST00000137090.8	1575	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	269.261025772391	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGCTGGTGAGATGGCTC	3165	False	NA	NA	False	AATAAA	-12	NA	129494461	129513367	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_129494525_129494775_129495037_129495987_129496055_129500879_129500973_129512276
transcript_64922.known	chr4	-	2639	5	FSM	ENSMUSG00000040795.13	ENSMUST00000046675.12	2639	5	0	0	0	0	multi-exon	TRUE	canonical	3	109	junction_1	14.396180048888	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATATGTACAAATATATGTA	NA	False	NA	NA	False	NA	NA	NA	129512892	129508918	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_129510974_129511150_129511252_129511456_129511710_129512284_129512429_129512806
transcript_64927.known	chr4	-	615	5	FSM	ENSMUSG00000028795.16	ENSMUST00000124630.8	615	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	36.8874978820738	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTACTCGGTGCTCTCCTT	NA	False	NA	-4	True	ATTAAA	-14	NA	129515214	129513068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_129513240_129514249_129514273_129514475_129514670_129514776_129514944_129515154
transcript_6493.known	chr10	+	1271	7	FSM	ENSMUSG00000078452.11	ENSMUST00000095795.5	1271	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	20.4402924527893	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTGCTCCAGAAGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	22237792	22250038	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_22237809_22238169_22238261_22238586_22238705_22246764_22247014_22247265_22247530_22248087_22248258_22249675
transcript_64934.known	chr4	+	652	4	FSM	ENSMUSG00000028797.21	ENSMUST00000174819.8	652	4	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_2	255.064697674923	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGAGTCCAGGACAGCCA	3191	False	NA	NA	False	NA	NA	NA	129494487	129501618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_129494525_129494775_129494928_129500879_129500973_129501248
transcript_64938.known	chr4	+	756	4	FSM	ENSMUSG00000028797.21	ENSMUST00000173937.8	756	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	291.296336323606	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTCTACAGAGTGAGTCCA	3187	False	NA	NA	False	NA	NA	NA	129494483	129501609	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_129494525_129494775_129495037_129500879_129500973_129501248
transcript_64948.known	chr4	-	491	3	FSM	ENSMUSG00000040795.13	ENSMUST00000121442.2	491	3	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	58	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGGACTTGTTTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	129512889	129511891	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_129512156_129512284_129512429_129512806
transcript_64950.known	chr4	+	1124	4	FSM	ENSMUSG00000028797.21	ENSMUST00000174350.8	1124	4	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_1	212.397426224205	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAACCCAA	3198	False	NA	NA	False	NA	NA	NA	129494494	129501670	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_129495037_129495987_129496055_129500879_129500973_129501248
transcript_64951.known	chr4	-	821	4	FSM	ENSMUSG00000028795.16	ENSMUST00000106035.8	821	4	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	8.17856276425687	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATCTTAGCAATTCCATG	NA	False	NA	NA	False	CATAAA	-25	NA	129517671	129514268	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_129514670_129514776_129514944_129516392_129516581_129517606
transcript_64952.known	chr4	-	4569	11	FSM	ENSMUSG00000053841.16	ENSMUST00000046425.16	4569	11	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_10	28.2349074728429	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTCAGCCAATCGAATTAT	7860	False	NA	-5	True	ATTAAA	-22	NA	129534858	129519870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_129522992_129523343_129523440_129524104_129524198_129525072_129525148_129525383_129525504_129525882_129526078_129528167_129528339_129530888_129530981_129533021_129533361_129534048_129534221_129534763
transcript_64958.known	chr4	-	989	6	FSM	ENSMUSG00000053841.16	ENSMUST00000133803.8	989	6	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_5	33.2349213930167	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTGCGCCAGGAGAATAT	7860	False	NA	NA	False	NA	NA	NA	129534858	129525957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_129526078_129528167_129528339_129530888_129530981_129533021_129533361_129534048_129534221_129534763
transcript_64959.known	chr4	-	5710	14	FSM	ENSMUSG00000003731.14	ENSMUST00000102590.11	5710	14	0	0	0	0	multi-exon	TRUE	canonical	3	106	junction_4	15.2943505832485	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCTTCTTTGGTTTGGAG	8834	False	NA	3	True	AATAAA	-22	NA	129566560	129537772	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_129541973_129542990_129543170_129544476_129544605_129545380_129545507_129547230_129547310_129547634_129547799_129548080_129548181_129548657_129548747_129549222_129549355_129550100_129550196_129551181_129551282_129551560_129551654_129555098_129555233_129566469
transcript_64963.known	chr4	-	1851	10	FSM	ENSMUSG00000053730.16	ENSMUST00000125445.8	1851	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_7	9.25896295822207	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCCTGTGTCCTGTGATT	10001	False	NA	NA	False	AAAAAG	-21	NA	129590589	129570147	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_129570602_129572364_129572486_129578104_129578293_129580563_129580901_129585760_129585916_129586225_129586310_129586428_129586512_129586858_129587079_129587678_129587806_129590507
transcript_64967.known	chr4	-	1810	9	FSM	ENSMUSG00000053730.16	ENSMUST00000102588.10	1810	9	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_6	5.99869777535091	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCCTGTGTCCTGTGATT	9992	False	NA	NA	False	AAAAAG	-21	NA	129590631	129570147	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_129570602_129572364_129572486_129578104_129578293_129580563_129580901_129585760_129585916_129586225_129586310_129586858_129587079_129587678_129587806_129590507
transcript_64974.known	chr4	+	3382	6	FSM	ENSMUSG00000028788.15	ENSMUST00000165853.2	3382	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	1089.03101884198	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACAGTTCATGTTTGCTC	NA	False	NA	40	True	AATAAA	-41	NA	129714500	129743796	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_129714593_129732770_129733472_129736462_129736556_129738854_129738986_129740257_129740333_129741506
transcript_64976.nic	chr4	+	583	3	ISM	ENSMUSG00000085389.8	ENSMUST00000147634.8	564	4	340	-257	-94	120	3prime_fragment	FALSE	canonical	2	2	junction_2	3.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTTTAGCTTGTGTCAAG	5330	False	NA	NA	False	NA	NA	NA	129854506	129857570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_129854602_129854991_129855074_129857164
transcript_64979.known	chr4	+	541	3	FSM	ENSMUSG00000085389.8	ENSMUST00000139884.2	541	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGGGATGGCCCCGCCCA	5424	False	NA	NA	False	NA	NA	NA	129854600	129857450	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_129854774_129854991_129855074_129857164
transcript_64981.nic	chr4	+	812	2	ISM	ENSMUSG00000085389.8	ENSMUST00000147634.8	564	4	340	1605	-94	-1605	internal_fragment	FALSE	canonical	3	9	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGTGTAGAATATGTGGC	5330	False	NA	NA	False	AATAAA	-16	NA	129854506	129855708	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_129854602_129854991
transcript_64982.known	chr4	+	828	2	FSM	ENSMUSG00000028782.15	ENSMUST00000136787.3	828	2	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCTGGGCAGGAGGCGCA	8683	False	NA	NA	False	NA	NA	NA	129914907	129916223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_129915455_129915942
transcript_64983.known	chr4	+	833	3	FSM	ENSMUSG00000040690.16	ENSMUST00000135675.2	833	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTATCTTCTCTGTCAT	6270	False	NA	NA	False	AAGAAA	-43	NA	129991396	129993069	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_129991765_129991958_129992037_129992682
transcript_64986.known	chr4	+	1915	6	FSM	ENSMUSG00000028779.17	ENSMUST00000118199.8	1915	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	92.1767866656242	846	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTCTTGACTGTGTGTC	4280	False	NA	26	True	AATAAA	-33	NA	129996350	130021928	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_129996521_130001155_130001444_130014960_130015235_130018855_130019012_130019446_130019591_130021045
transcript_64994.known	chr4	+	1551	5	FSM	ENSMUSG00000028779.17	ENSMUST00000030563.6	1551	5	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_1	25.1047804212664	957	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACTTCTTGACTGTGTGT	9278	False	NA	25	True	AATAAA	-32	NA	130001348	130021927	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_130001444_130014960_130015235_130018855_130019012_130019446_130019591_130021045
transcript_64996.known	chr4	-	1952	12	FSM	ENSMUSG00000028776.15	ENSMUST00000105999.9	1952	12	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_11	29.3189922368611	822	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTGTCTGGGAGTCTTCA	NA	False	NA	NA	False	AATAAA	-19	NA	130068595	130059394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_130059999_130060095_130060142_130060694_130060819_130061048_130061095_130061197_130061388_130061490_130061642_130061722_130061847_130062811_130062927_130063103_130063197_130066724_130066789_130067685_130068001_130068515
transcript_64997.known	chr4	-	1976	12	FSM	ENSMUSG00000028776.15	ENSMUST00000105998.8	1976	12	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_11	72.1002516014454	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCATCTCCCTAGCCTCC	NA	False	NA	NA	False	NA	NA	NA	130068915	130059511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_130059999_130060095_130060142_130060694_130060819_130061048_130061095_130061197_130061388_130061490_130061642_130061722_130061847_130062811_130062927_130063103_130063197_130066724_130066789_130067685_130068001_130068694
transcript_65.known	ERCC-00137	+	521	1	FSM	ERCC-00137A	DQ855000	521	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00137_+_0_500
transcript_65001.known	chr4	-	1847	11	FSM	ENSMUSG00000028776.15	ENSMUST00000175992.8	1847	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	79.0445444037727	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTCTGGGAGTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	130068585	130059396	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_130059999_130060095_130060142_130060694_130060819_130061048_130061095_130061197_130061388_130061490_130061642_130061722_130061847_130062811_130062927_130066724_130066789_130067685_130068001_130068515
transcript_65012.known	chr4	-	911	2	FSM	ENSMUSG00000028776.15	ENSMUST00000145000.3	911	2	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_1	0	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTCTGGGAGTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	130060404	130059396	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_130059999_130060095
transcript_65017.known	chr4	-	1878	10	FSM	ENSMUSG00000023232.18	ENSMUST00000105996.8	1878	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_9	3.01027048536535	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCCTCCCATGTCTTGTG	7796	False	NA	-1	True	AATAAA	-17	NA	130169379	130147287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_130147859_130149148_130149359_130152020_130152157_130152493_130152585_130154435_130154606_130156820_130156959_130157374_130157455_130158053_130158245_130158861_130159024_130169250
transcript_6503.nnic	chr10	-	1180	7	NNC	ENSMUSG00000071359.14	novel	2873	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_6	90.384364429548	85	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGATCTCTCTTCATATC	NA	False	NA	-15	True	AATAAA	-8	NA	22607260	22581279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_22581795_22583487_22583583_22583669_22583774_22585044_22585109_22585255_22585339_22587812_22587886_22607014
transcript_65047.known	chr4	+	823	4	FSM	ENSMUSG00000028773.9	ENSMUST00000070532.8	823	4	0	0	0	0	multi-exon	FALSE	canonical	3	4337	junction_3	149.244765402342	43167	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTCTGTCTTTGGTCCTC	NA	False	NA	31	True	AATAAA	-20	NA	130202387	130209256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_130202644_130206083_130206257_130207746_130207849_130208964
transcript_65048.known	chr4	-	2113	8	FSM	ENSMUSG00000028772.20	ENSMUST00000134159.3	2113	8	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_6	38.5094740529747	327	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGGGTCCAGGCTGATGC	NA	False	NA	NA	False	AATAAA	-17	NA	130253736	130209175	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_130210602_130220985_130221132_130223366_130223468_130230870_130230963_130232276_130232378_130243057_130243116_130247928_130248050_130253668
transcript_6505.known	chr10	-	2873	7	FSM	ENSMUSG00000071359.14	ENSMUST00000127698.8	2873	7	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_1	20.3367483471014	620	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTTAAGTATTCCCCCT	NA	False	NA	-7	True	AATAAA	-21	NA	22607346	22579777	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_22581795_22583487_22583583_22583669_22583774_22585044_22585109_22585255_22585339_22587812_22587991_22607014
transcript_65064.known	chr4	+	1584	10	FSM	ENSMUSG00000074088.7	ENSMUST00000105994.4	1584	10	0	0	0	0	multi-exon	FALSE	canonical	3	1067	junction_7	51.5407066738946	4346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAACCTTGTGACTTGG	NA	False	NA	22	True	ATTAAA	-23	NA	130253924	130283819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_130254143_130256420_130256551_130258867_130258962_130261981_130262148_130271838_130271962_130277186_130277308_130278274_130278358_130279746_130279809_130282367_130282472_130283336
transcript_6507.known	chr10	-	1195	7	FSM	ENSMUSG00000071359.14	ENSMUST00000095794.4	1195	7	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_6	96.5702104976248	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGATCTCTCTTCATATC	NA	False	NA	-15	True	AATAAA	-8	NA	22607837	22581279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_22581795_22583487_22583583_22583669_22583774_22585044_22585109_22585255_22585339_22587812_22587991_22607681
transcript_65088.known	chr4	+	1752	6	FSM	ENSMUSG00000074088.7	ENSMUST00000180577.2	1752	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	544.581086707939	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTTTTGTTAGGTTTTA	NA	False	NA	NA	False	AATAAA	-15	NA	130253986	130269369	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_130254143_130256420_130256551_130258867_130258962_130261981_130262148_130267134_130267212_130268240
transcript_65090.known	chr4	+	1202	7	FSM	ENSMUSG00000078532.10	ENSMUST00000105993.4	1202	7	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_2	13.2748718344933	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGGGTCTTCCTCTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	130297196	130339628	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_130297542_130332055_130332194_130333903_130333985_130337200_130337399_130338581_130338643_130339094_130339177_130339331
transcript_65095.nnic	chr4	-	909	5	Antisense	novelGene_ENSMUSG00000078532.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_3	1.6583123951777	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAAAGAAAAAGGAAAAG	8580	False	NA	NA	False	NA	NA	NA	130351360	130338273	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr4_-_130338624_130339078_130339185_130339312_130339487_130340389_130340439_130351130
transcript_65098.known	chr4	+	5389	22	FSM	ENSMUSG00000028580.16	ENSMUST00000030315.13	5389	22	0	0	0	0	multi-exon	TRUE	canonical	3	218	junction_8	122.217214904643	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTGCTCTCACTTCT	NA	False	NA	24	True	AATACA	-18	NA	130390631	130508875	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130471000_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493367_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
transcript_65099.known	chr4	+	3991	22	FSM	ENSMUSG00000028580.16	ENSMUST00000097862.3	3991	22	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_17	105.62885866236	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GTTAAAAAAAAAGACAAAAA	NA	False	NA	NA	False	NA	NA	NA	130390716	130507565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130471003_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493367_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
transcript_65102.known	chr4	+	4614	18	FSM	ENSMUSG00000028580.16	ENSMUST00000105991.9	4614	18	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_3	156.174288231124	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGTACTGCTCTCACTT	NA	False	NA	22	True	AATACA	-16	NA	130390669	130508873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_130390779_130396235_130396610_130428352_130428422_130468773_130468868_130471003_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493361_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
transcript_65105.known	chr4	+	1273	4	FSM	ENSMUSG00000028580.16	ENSMUST00000122847.2	1273	4	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_3	83.2119115404893	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAGAACAAAAGAATT	NA	False	NA	NA	False	AAAAAG	-7	NA	130390676	130446192	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464
transcript_65108.nnic	chr4	+	2637	9	NNC	ENSMUSG00000028581.18	novel	2600	8	NA	NA	-82	-8	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	159.179487921654	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTTGCTCTGTCTCATGT	NA	False	NA	14	True	AATAAA	-10	NA	130640353	130663444	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_130640746_130653415_130653510_130654081_130654159_130655947_130656074_130656730_130656854_130658081_130658178_130659327_130659421_130661771_130662433_130662469
transcript_6511.known	chr10	-	129	2	FSM	ENSMUSG00000118528.2	ENSMUST00000238910.2	129	2	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCGTGGTGGGAACCAAG	NA	False	NA	NA	False	CATAAA	-39	NA	22607136	22587983	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_22587991_22607014
transcript_65112.known	chr4	+	2600	8	FSM	ENSMUSG00000028581.18	ENSMUST00000151698.8	2600	8	0	0	0	0	multi-exon	FALSE	canonical	3	425	junction_4	26.2071808199702	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTCATGTGGTTCTTG	NA	False	NA	22	True	AATAAA	-18	NA	130640435	130663452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_130640746_130653415_130653510_130654081_130654159_130655947_130656074_130656730_130656854_130658081_130658178_130659327_130659421_130661771
transcript_65118.known	chr4	+	2001	8	FSM	ENSMUSG00000040533.8	ENSMUST00000102576.4	2001	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	5.36808406515884	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGAATTAGTGGTGGTGA	1491	False	NA	NA	False	AATAAA	-32	NA	130671695	130682786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_130671841_130673139_130673487_130677245_130677469_130678599_130678726_130679149_130679567_130680143_130680297_130681646_130681728_130682277
transcript_65125.nic	chr4	+	1416	11	NIC	ENSMUSG00000028910.13	novel	1337	10	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_5	55.4697214703662	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCATGCGTGTGGAGGAA	NA	False	NA	33	True	AATAAA	-33	NA	131570757	131595097	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_131570990_131581026_131581125_131581895_131582028_131585067_131585212_131588071_131588175_131588487_131588544_131589086_131589190_131590228_131590303_131592367_131592429_131592566_131592640_131594757
transcript_65129.known	chr4	+	1337	10	FSM	ENSMUSG00000028910.13	ENSMUST00000030742.11	1337	10	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_6	17.6243378301319	606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCATGCGTGTGGAGGAA	NA	False	NA	33	True	AATAAA	-33	NA	131570780	131595097	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_131570990_131581026_131581125_131581895_131582028_131585067_131585212_131588071_131588175_131589086_131589190_131590228_131590303_131592367_131592429_131592566_131592640_131594757
transcript_65139.known	chr4	+	387	2	FSM	ENSMUSG00000028910.13	ENSMUST00000139573.2	387	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CATAAGAAAGTTAAAATTAA	NA	False	NA	NA	False	NA	NA	NA	131570815	131571318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_131570990_131571105
transcript_65140.known	chr4	+	948	8	FSM	ENSMUSG00000028910.13	ENSMUST00000127735.8	948	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	61.0138826624812	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCATGCGTGTGGAGGAA	NA	False	NA	33	True	AATAAA	-33	NA	131585073	131595097	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_131585212_131588071_131588175_131588487_131588544_131589086_131589190_131590228_131590303_131592367_131592429_131592566_131592640_131594757
transcript_65141.known	chr4	+	2257	6	FSM	ENSMUSG00000028911.17	ENSMUST00000053819.6	2257	6	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_1	33.990586932267	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCACCGCGCTTGAATCTA	NA	False	NA	22	True	AATAAA	-22	NA	131600927	131629017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_131601182_131618517_131618661_131619391_131619505_131624967_131625183_131627372_131627463_131627575
transcript_65144.known	chr4	-	5074	18	FSM	ENSMUSG00000028906.18	ENSMUST00000146021.8	5074	18	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_5	24.1593613426437	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGACTGTGAGGATTGAT	5309	False	NA	NA	False	AATAAA	-21	NA	131802632	131650723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_131653245_131653814_131653920_131655802_131655884_131657004_131657107_131663049_131663179_131684953_131685131_131695098_131695287_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895_131731106_131734268_131734733_131802490
transcript_65146.known	chr4	-	472	1	FSM	ENSMUSG00000081394.2	ENSMUST00000117559.2	472	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	204	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGTATGCGTTAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	131876195	131875723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_131875700_131876200
transcript_65147.known	chr4	-	4129	5	FSM	ENSMUSG00000040025.18	ENSMUST00000152796.8	4129	5	0	0	0	0	multi-exon	FALSE	canonical	3	863	junction_4	54.1589097009901	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTGGCCTGCATGTATA	NA	False	NA	NA	False	ATTAAA	-19	NA	131939614	131912222	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_131914259_131931442_131933027_131938062_131938143_131938742_131938768_131939210
transcript_65148.known	chr4	-	2536	4	FSM	ENSMUSG00000040025.18	ENSMUST00000102570.5	2536	4	0	0	0	0	multi-exon	FALSE	canonical	3	871	junction_2	49.2815043060443	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGGAAAAAAAAAAGGAAAAA	NA	False	NA	NA	False	NA	NA	NA	131939416	131914060	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_131914259_131931442_131933027_131938062_131938143_131938742
transcript_65149.known	chr4	-	955	4	FSM	ENSMUSG00000040025.18	ENSMUST00000085181.5	955	4	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	419.072255769283	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTGTTCTTGTGTATTA	NA	False	NA	NA	False	AGTAAA	-21	NA	131939402	131913600	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_131914259_131938062_131938143_131938742_131938768_131939210
transcript_65152.known	chr4	-	502	1	FSM	ENSMUSG00000083757.3	ENSMUST00000229086.2	502	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	66145	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAATCCTTGATCTACACT	9912	False	NA	NA	False	AATAAA	-40	NA	131947800	131947298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_131947300_131947800
transcript_65153.known	chr4	-	4632	11	FSM	ENSMUSG00000028901.14	ENSMUST00000105965.8	4632	11	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_10	24.0074988284911	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAACGCCAACTGATTGCG	1993	False	NA	NA	False	AATAAA	-30	NA	131988832	131950256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_131953774_131955182_131955306_131958296_131958435_131959322_131959455_131962059_131962218_131964421_131964526_131969635_131969761_131973296_131973380_131978985_131979144_131979741_131979805_131988801
transcript_65155.known	chr4	-	1925	10	FSM	ENSMUSG00000028901.14	ENSMUST00000105964.2	1925	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	18.219511993573	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAACAAAAACAAA	1912	False	NA	-58	True	NA	NA	NA	131988913	131952981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_131953774_131955182_131955306_131958296_131958435_131959322_131959455_131962059_131962218_131964421_131964526_131969635_131969761_131973296_131973380_131978985_131979144_131988801
transcript_65162.known	chr4	+	777	7	FSM	ENSMUSG00000028899.12	ENSMUST00000105963.2	777	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	231.697180244675	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGACCTCAGCCATCTCAT	NA	False	NA	NA	False	NA	NA	NA	132001726	132020023	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_132001799_132009304_132009390_132010104_132010357_132012354_132012433_132016625_132016741_132019173_132019263_132019937
transcript_65168.known	chr4	+	3787	6	FSM	ENSMUSG00000028899.12	ENSMUST00000030731.11	3787	6	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_3	32.7987804651331	467	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAGACTTGGGTGGAATTG	NA	False	NA	NA	False	NA	NA	NA	132001685	132023077	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_132001799_132010104_132010357_132012354_132012433_132016625_132016741_132019173_132019263_132019937
transcript_65169.known	chr4	+	241	2	FSM	ENSMUSG00000028899.12	ENSMUST00000124365.2	241	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTTCTCCTGGTAAGGT	NA	False	NA	NA	False	CATAAA	-43	NA	132001723	132004099	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_132001799_132003933
transcript_65170.known	chr4	-	761	2	FSM	ENSMUSG00000089687.3	ENSMUST00000040411.7	761	2	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GACAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132030696	132029507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132029994_132030421
transcript_65175.known	chr4	+	129	1	FSM	ENSMUSG00000064604.3	ENSMUST00000082670.3	129	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATATCAGGCCTCAAGTTG	NA	False	NA	NA	False	NA	NA	NA	132037251	132037380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_132037300_132037400
transcript_65176.known	chr4	+	606	5	FSM	ENSMUSG00000086290.10	ENSMUST00000153474.9	606	5	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	27.427176303805	6719	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035988	132038335	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_132036219_132037148_132037215_132037461_132037527_132037761_132037816_132038144
transcript_65177.known	chr4	+	1213	3	FSM	ENSMUSG00000086290.10	ENSMUST00000126380.4	1213	3	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	32	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035945	132038335	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_132036219_132037148_132037215_132037461
transcript_65178.known	chr4	+	896	4	FSM	ENSMUSG00000086290.10	ENSMUST00000232260.2	896	4	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	29.9369708257569	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035933	132038335	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_132036219_132037148_132037215_132037461_132037816_132038144
transcript_65179.known	chr4	+	935	4	FSM	ENSMUSG00000086290.10	ENSMUST00000144705.9	935	4	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	29.9369708257569	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035988	132038335	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_132036219_132037148_132037215_132037461_132037527_132037761
transcript_65180.known	chr4	+	1416	2	FSM	ENSMUSG00000086290.10	ENSMUST00000137343.9	1416	2	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTCTTTTTTATTTATT	NA	False	NA	25	True	AATAAA	-14	NA	132035987	132038333	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_132036219_132037148
transcript_65181.known	chr4	+	1538	4	FSM	ENSMUSG00000086290.10	ENSMUST00000232301.2	1538	4	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_2	0.471404520791032	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035986	132038335	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_132037215_132037461_132037527_132037761_132037816_132038144
transcript_65182.known	chr4	+	422	5	FSM	ENSMUSG00000086290.10	ENSMUST00000128000.9	422	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	86.7478385897885	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132036206	132038335	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_132036253_132037148_132037215_132037461_132037527_132037761_132037816_132038144
transcript_6519.known	chr10	-	129	1	FSM	ENSMUSG00000070063.3	ENSMUST00000093556.3	129	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTGGGAAGACTGAATCA	NA	False	NA	-8	True	NA	NA	NA	23661373	23661244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_23661200_23661400
transcript_65191.nic	chr4	-	1033	8	NIC	ENSMUSG00000028898.16	novel	1130	9	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_7	168.067042016705	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTTCAACTGTAT	2315	False	NA	0	True	AATAAA	-17	NA	132056850	132039073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132052572_132053256_132053357_132056663
transcript_65194.nic	chr4	-	956	7	NIC	ENSMUSG00000028898.16	novel	1130	9	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_6	188.905399605199	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTTCAACTGTAT	2292	False	NA	0	True	AATAAA	-17	NA	132056873	132039073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132052572_132056663
transcript_65198.known	chr4	-	650	6	FSM	ENSMUSG00000028898.16	ENSMUST00000150959.8	650	6	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_3	246.42532337404	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGAATAATGACCTTTTTC	2360	False	NA	-86	True	NA	NA	NA	132056805	132039159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132039318_132041303_132041338_132041515_132041679_132052518_132052572_132053256_132053357_132056663
transcript_6520.known	chr10	-	584	6	FSM	ENSMUSG00000061983.8	ENSMUST00000218107.2	584	6	0	0	0	0	multi-exon	FALSE	canonical	3	2594	junction_5	774.773670177298	256961	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTTTGCTGGTATAA	NA	False	NA	-3	True	AATAAA	-28	NA	23663173	23661080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662661_23662779_23662891_23662943_23663053
transcript_65200.known	chr4	-	1130	9	FSM	ENSMUSG00000028898.16	ENSMUST00000030730.14	1130	9	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_8	39.2324801663112	1453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTTCAACTGTAT	2316	False	NA	0	True	AATAAA	-17	NA	132056849	132039073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132052572_132053256_132053357_132055779_132055878_132056663
transcript_65201.known	chr4	-	961	8	FSM	ENSMUSG00000028898.16	ENSMUST00000105962.10	961	8	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	178.321310549015	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTTCAACTGTAT	2365	False	NA	0	True	AATAAA	-17	NA	132056800	132039073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132039318_132041303_132041338_132041515_132041679_132048989_132049122_132052518_132052572_132053256_132053357_132055779_132055878_132056663
transcript_65202.known	chr4	-	1791	8	FSM	ENSMUSG00000028898.16	ENSMUST00000146166.8	1791	8	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_7	40.7315752763111	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGGGCTTCTTCAACTGT	2338	False	NA	-2	True	AATAAA	-15	NA	132056827	132039075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132053357_132055779_132055878_132056663
transcript_65203.known	chr4	-	553	6	FSM	ENSMUSG00000028898.16	ENSMUST00000131524.8	553	6	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_5	183.998260861346	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGTACAGCCAGATGTACA	2372	False	NA	NA	False	NA	NA	NA	132056793	132041660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132041679_132046765_132046886_132048989_132049122_132052518_132052572_132053256_132053357_132056663
transcript_65204.known	chr4	-	371	3	FSM	ENSMUSG00000028898.16	ENSMUST00000105960.3	371	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	246.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGCCTTACCTGCTGTT	2316	False	NA	NA	False	NA	NA	NA	132056849	132048989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132049122_132052518_132052572_132056663
transcript_6521.known	chr10	-	494	5	FSM	ENSMUSG00000061983.8	ENSMUST00000220070.2	494	5	0	0	0	0	multi-exon	FALSE	canonical	3	3174	junction_1	596.623153674076	3199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTTCTCTTGTATTTCT	NA	False	NA	-18	True	AATAAA	-13	NA	23662987	23661095	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662661_23662779_23662891
transcript_65210.known	chr4	-	205	1	FSM	ENSMUSG00000065353.3	ENSMUST00000083419.3	205	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4535	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAAATTCCTAAGGCTTT	NA	False	NA	NA	False	NA	NA	NA	132079837	132079632	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132079600_132079800
transcript_65211.known	chr4	-	205	1	FSM	ENSMUSG00000064387.3	ENSMUST00000082453.3	205	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAGTCATGCAATCTGG	NA	False	NA	NA	False	NA	NA	NA	132080290	132080085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132080100_132080300
transcript_65212.known	chr4	-	437	3	FSM	ENSMUSG00000085241.8	ENSMUST00000152943.8	437	3	0	0	0	0	multi-exon	FALSE	canonical	3	959	junction_1	21	9479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTGTGATTTAATGTGT	NA	False	NA	-9	True	ATTAAA	-15	NA	132080997	132079243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132079555_132079973_132080010_132080907
transcript_65213.known	chr4	-	2285	10	FSM	ENSMUSG00000028896.14	ENSMUST00000084250.11	2285	10	0	0	0	0	multi-exon	FALSE	canonical	3	372	junction_9	35.0019399815087	2174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTTTTATGCGTGTCC	5439	False	NA	-10	True	AATAAA	-21	NA	132073058	132059229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132067235_132067318_132072956
transcript_65214.known	chr4	-	2278	11	FSM	ENSMUSG00000028896.14	ENSMUST00000030726.13	2278	11	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_9	136.55039362814	1647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTTTGTTTTTATGCGT	5481	False	NA	-14	True	AATAAA	-17	NA	132073016	132059233	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132066513_132066553_132067235_132067318_132072956
transcript_65215.known	chr4	-	426	3	FSM	ENSMUSG00000085241.8	ENSMUST00000151374.2	426	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	490.5	599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCTGTGATTTAATGTG	NA	False	NA	-10	True	ATTAAA	-14	NA	132080944	132079244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132079555_132079930_132080010_132080907
transcript_65216.known	chr4	-	4614	14	FSM	ENSMUSG00000066043.14	ENSMUST00000102568.10	4614	14	0	0	0	0	multi-exon	FALSE	canonical	2	21	junction_11	24.1391430016078	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAATTTGTGTTACTTTTT	NA	False	NA	NA	False	ATTAAA	-23	NA	132149800	132083233	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132085596_132087785_132087863_132088888_132089027_132091041_132091104_132092885_132092942_132095212_132095367_132097044_132097227_132097836_132098432_132104490_132104866_132105715_132105875_132110592_132110674_132114202_132114377_132140380_132140435_132149655
transcript_65217.known	chr4	-	1029	6	FSM	ENSMUSG00000066043.14	ENSMUST00000152271.8	1029	6	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_3	14.7512711316686	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACCACCACTGATAATCCC	NA	False	NA	NA	False	NA	NA	NA	132149752	132098261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132098432_132104490_132104866_132105715_132105875_132114202_132114377_132140380_132140435_132149655
transcript_65219.known	chr4	-	1675	3	FSM	ENSMUSG00000066042.5	ENSMUST00000102567.4	1675	3	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_2	8.5	396	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTGTGATTCTGATTCT	1047	False	NA	-15	True	AATAAA	-13	NA	132191232	132186041	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132187425_132190175_132190320_132191084
transcript_6522.known	chr10	-	490	7	FSM	ENSMUSG00000061983.8	ENSMUST00000073926.8	490	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1773.5106192709	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTGATTTTTCTCTTG	NA	False	NA	-25	True	AATAAA	-6	NA	23663086	23661102	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662522_23662538_23662661_23662779_23662891_23662943_23663053
transcript_65220.known	chr4	-	3475	10	FSM	ENSMUSG00000028893.9	ENSMUST00000030724.9	3475	10	0	0	0	0	multi-exon	TRUE	canonical	3	666	junction_4	59.9637750728526	170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTGCTAATGGGATGTT	NA	False	NA	-31	True	AATAAA	-22	NA	132237812	132219342	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132221114_132221774_132221920_132224195_132224387_132224682_132224802_132225263_132225415_132226247_132226461_132226555_132226739_132227076_132227275_132229873_132229940_132237374
transcript_6523.known	chr10	-	474	4	FSM	ENSMUSG00000061983.8	ENSMUST00000218142.2	474	4	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_3	1924.28809346903	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTTTGCTGGTATAA	NA	False	NA	-3	True	AATAAA	-28	NA	23662700	23661080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662522
transcript_6524.known	chr10	-	488	2	FSM	ENSMUSG00000061983.8	ENSMUST00000219783.2	488	2	0	0	0	0	multi-exon	FALSE	canonical	3	3174	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTGATTTTTCTCTTG	NA	False	NA	-25	True	AATAAA	-6	NA	23661892	23661102	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_23661172_23661473
transcript_65241.known	chr4	+	485	2	FSM	ENSMUSG00000087352.2	ENSMUST00000124471.2	485	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCTGCTTCTCTCCTAGC	NA	False	NA	NA	False	NA	NA	NA	132259997	132260912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_132260219_132260648
transcript_65243.known	chr4	-	539	3	FSM	ENSMUSG00000054428.13	ENSMUST00000067496.7	539	3	0	0	0	0	multi-exon	FALSE	canonical	3	7869	junction_2	284	37785	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGATGCCTTCTACTGTCT	9241	False	NA	-20	True	AATAAA	-19	NA	132260970	132257865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132258135_132260606_132260699_132260792
transcript_65244.known	chr4	-	462	2	FSM	ENSMUSG00000054428.13	ENSMUST00000152993.8	462	2	0	0	0	0	multi-exon	FALSE	canonical	3	8437	junction_1	0	1009	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGATGCCTTCTACTGTCT	9412	False	NA	-20	True	AATAAA	-19	NA	132260799	132257865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132258135_132260606
transcript_65245.known	chr4	-	1014	2	FSM	ENSMUSG00000054428.13	ENSMUST00000145795.2	1014	2	0	0	0	0	multi-exon	FALSE	canonical	3	7869	junction_1	0	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAACAAAACAAAAAA	9305	False	NA	NA	False	NA	NA	NA	132260906	132259798	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132260699_132260792
transcript_6525.known	chr10	-	1795	3	FSM	ENSMUSG00000061983.8	ENSMUST00000220171.2	1795	3	0	0	0	0	multi-exon	FALSE	canonical	3	2594	junction_2	565	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTTGTTTGCTGGTATA	NA	False	NA	-4	True	AATAAA	-27	NA	23663100	23661081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_23662779_23662891_23662943_23663053
transcript_65256.known	chr4	+	746	8	FSM	ENSMUSG00000054405.15	ENSMUST00000105939.10	746	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1077.24724768878	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGATTGCTTTTTAGTCTATT	2362	False	NA	-27	True	NA	NA	NA	132262891	132280531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_132262975_132269092_132269150_132271366_132271434_132271967_132272063_132273947_132274020_132277687_132277780_132278845_132278922_132280327
transcript_65259.known	chr4	+	1401	9	FSM	ENSMUSG00000054405.15	ENSMUST00000094657.10	1401	9	0	0	0	0	multi-exon	TRUE	canonical	3	2684	junction_8	233.065676097962	15324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGGTCTCCTCCTCGGGT	2331	False	NA	19	True	AATAAA	-19	NA	132262860	132281053	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_132262975_132265497_132265600_132269092_132269150_132271366_132271434_132271967_132272063_132273947_132274020_132277687_132277780_132278845_132278922_132280327
transcript_6526.known	chr10	-	460	5	FSM	ENSMUSG00000061983.8	ENSMUST00000218221.2	460	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1861.96017344625	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTTCTCTTGTATTTCT	NA	False	NA	-18	True	AATAAA	-13	NA	23663115	23661095	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662661_23662779_23663053
transcript_65260.known	chr4	+	1837	8	FSM	ENSMUSG00000054405.15	ENSMUST00000142281.8	1837	8	0	0	0	0	multi-exon	FALSE	canonical	3	2684	junction_7	240.501516818162	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCCCGTTGTGTCCTTGCT	2348	False	NA	1	True	NA	NA	NA	132262877	132280972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_132262975_132265497_132265600_132269092_132269150_132271366_132272063_132273947_132274020_132277687_132277780_132278845_132278922_132280327
transcript_65265.known	chr4	+	5160	17	FSM	ENSMUSG00000028886.16	ENSMUST00000081726.13	5160	17	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_15	5.48542101848163	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTTTTCTCCTTTGTCTTT	NA	False	NA	21	True	AATAAA	-17	NA	132366356	132452076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_132366467_132384003_132384100_132389205_132389250_132394465_132394546_132397499_132397567_132400206_132400344_132417015_132417102_132420272_132420457_132422057_132422195_132426340_132426425_132428331_132428422_132431662_132431722_132434273_132434435_132437255_132437371_132439152_132439275_132446522_132446624_132448589
transcript_65270.known	chr4	-	4245	3	FSM	ENSMUSG00000037752.5	ENSMUST00000045550.5	4245	3	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	6.5	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATTGTTTATTTTCCAGGA	4044	False	NA	NA	False	AATAAA	-20	NA	132459857	132452207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132455882_132458186_132458384_132459483
transcript_65271.known	chr4	-	376	3	FSM	ENSMUSG00000037752.5	ENSMUST00000150104.2	376	3	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	21.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTACCTGTCTTCCCTCCAA	4062	False	NA	NA	False	NA	NA	NA	132459839	132455816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132455882_132458186_132458384_132459725
transcript_65276.known	chr4	-	2006	8	FSM	ENSMUSG00000028885.9	ENSMUST00000030709.9	2006	8	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_5	8.56666534317997	195	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACCGTGAGGGATCACAGC	NA	False	NA	-1	True	AATAAA	-31	NA	132484563	132460276	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132461071_132465329_132465464_132465547_132465729_132466939_132467113_132468698_132468843_132472398_132472497_132473788_132474003_132484295
transcript_65278.known	chr4	+	823	5	FSM	ENSMUSG00000028884.15	ENSMUST00000130090.8	823	5	0	0	0	0	multi-exon	FALSE	canonical	3	1348	junction_4	96.0676844729798	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAAAATAATAAA	NA	False	NA	NA	False	NA	NA	NA	132495686	132501546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_132495778_132495990_132496098_132497856_132497959_132499151_132499266_132501137
transcript_65279.known	chr4	+	1813	9	FSM	ENSMUSG00000028884.15	ENSMUST00000102561.11	1813	9	0	0	0	0	multi-exon	FALSE	canonical	3	1317	junction_7	93.1791788706039	3257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTCGCCCCTGGCCGTGCT	NA	False	NA	7	True	AGTAAA	-24	NA	132495645	132506063	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_132495778_132495990_132496098_132497856_132497959_132499151_132499266_132501137_132501213_132502327_132502445_132503558_132503667_132503963_132504059_132505100
transcript_65282.known	chr4	-	2934	9	FSM	ENSMUSG00000028879.5	ENSMUST00000030698.5	2934	9	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_5	25.18928343562	546	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTTGCACTTGATTGT	6093	False	NA	-4	True	AATAAA	-14	NA	132611820	132580811	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132582870_132584610_132584694_132585729_132585803_132587854_132587961_132590136_132590181_132590469_132590608_132595478_132595579_132598898_132598969_132611558
transcript_65285.known	chr4	-	3053	9	FSM	ENSMUSG00000028878.12	ENSMUST00000030696.11	3053	9	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_4	24.0676130931175	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGTTGTGATTCAGTTG	NA	False	NA	0	True	AATAAA	-19	NA	132649869	132626523	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132628620_132629313_132629416_132631208_132631345_132638002_132638090_132640979_132641138_132643429_132643583_132645032_132645088_132648037_132648103_132649668
transcript_65288.known	chr4	-	1863	8	FSM	ENSMUSG00000028878.12	ENSMUST00000097856.10	1863	8	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	31.9367998345712	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCTGGATCTTTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	132649804	132627561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132628620_132629313_132629416_132631208_132631345_132640979_132641138_132643429_132643583_132645032_132645088_132648037_132648103_132649668
transcript_6530.known	chr10	+	2837	14	FSM	ENSMUSG00000037455.17	ENSMUST00000119597.8	2837	14	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_6	14.8148334428987	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCATTGTATTCATTCAAA	NA	False	NA	24	True	AATAAA	-17	NA	23672883	23703866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_23673082_23674643_23674784_23679655_23679752_23680085_23680160_23681790_23681939_23686686_23686844_23692190_23692328_23694957_23695060_23696711_23696804_23698820_23698917_23700583_23700659_23701844_23701939_23702040_23702094_23702491
transcript_65305.known	chr4	+	5642	9	FSM	ENSMUSG00000028868.14	ENSMUST00000084241.12	5642	9	0	0	0	0	multi-exon	FALSE	canonical	3	420	junction_8	37.0776212829248	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGGTGTCTGTGTGTGT	NA	False	NA	44	True	GATAAA	-22	NA	132857815	132927067	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_132858040_132903751_132903924_132912279_132912415_132912909_132913064_132916388_132916507_132917439_132917571_132919415_132919572_132921706_132922219_132923027
transcript_65308.nic	chr4	+	832	5	ISM	ENSMUSG00000028868.14	ENSMUST00000084241.12	5642	9	-29	10561	-29	-1354	5prime_fragment	FALSE	canonical	3	442	junction_3	36.1135362433534	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGGGGAAGGGACCTCTG	NA	False	NA	34	True	NA	NA	NA	132857786	132916506	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_132858040_132903751_132903924_132912279_132912415_132912909_132913064_132916388
transcript_65311.known	chr4	+	986	6	FSM	ENSMUSG00000028865.15	ENSMUST00000105910.2	986	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	9.2736184954957	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGACCTATGTCTTGGG	NA	False	NA	20	True	AATAAA	-22	NA	132948120	132951866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_132948379_132948753_132948916_132949015_132949088_132949479_132949525_132950913_132951059_132951562
transcript_65312.nic	chr4	+	795	6	NIC	ENSMUSG00000028865.15	novel	986	6	NA	NA	79	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	19.825236442474	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGACCTATGTCTTGGG	NA	False	NA	20	True	AATAAA	-22	NA	132948199	132951866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_132948379_132948753_132948916_132949015_132949088_132949479_132949525_132950913_132951059_132951674
transcript_6532.nnic	chr10	+	2937	3	NNC	ENSMUSG00000037455.17	novel	437	5	NA	NA	-3654	-5944	intron_retention	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTTCAGCTCCACCTTC	NA	False	NA	NA	False	NA	NA	NA	23678219	23689035	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_23680641_23685994_23686361_23688885
transcript_65320.known	chr4	-	1951	15	FSM	ENSMUSG00000028860.14	ENSMUST00000030674.8	1951	15	0	0	0	0	multi-exon	TRUE	canonical	1	4	junction_9	2.42541812090709	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGCTTAACTGGGTATGA	NA	False	NA	4	True	AATAAA	-20	NA	132990424	132980400	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132980620_132980765_132980972_132982843_132982944_132983044_132983124_132983352_132983512_132983798_132983896_132984175_132984343_132984446_132984561_132984727_132984823_132985044_132985133_132986171_132986218_132986292_132986369_132986598_132986748_132988163_132988393_132990297
transcript_65321.known	chr4	-	613	7	FSM	ENSMUSG00000028857.17	ENSMUST00000134781.8	613	7	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	347.535609686259	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCTCCTCGGCATTATC	NA	False	NA	NA	False	NA	NA	NA	133004929	132994197	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132994233_132995506_132995638_132995719_132995817_132997088_132997121_132997980_132998126_132998273_132998359_133004841
transcript_65324.known	chr4	-	1484	6	FSM	ENSMUSG00000028857.17	ENSMUST00000105907.9	1484	6	0	0	0	0	multi-exon	FALSE	canonical	3	666	junction_4	52.562343935559	1326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGTCTGTCATTTTCTT	NA	False	NA	-12	True	AATAAA	-14	NA	133005103	132993355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132994233_132995506_132995638_132995719_132995817_132997088_132997121_132998273_132998359_133004841
transcript_65328.known	chr4	-	546	5	FSM	ENSMUSG00000028857.17	ENSMUST00000139030.2	546	5	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_4	309.884151740614	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATTATCCTGACCGTCAG	NA	False	NA	NA	False	NA	NA	NA	133005081	132994186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132994233_132995506_132995638_132995719_132995817_132997088_132997121_133004841
transcript_6533.known	chr10	+	2416	7	FSM	ENSMUSG00000037440.9	ENSMUST00000041416.8	2416	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.59861050777091	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTTTGGCTCTCTGTTAT	NA	False	NA	NA	False	NA	NA	NA	23770585	23781241	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_23770990_23773190_23773322_23774305_23774499_23775291_23775584_23776482_23776842_23779283_23779455_23780375
transcript_65330.known	chr4	-	537	5	FSM	ENSMUSG00000028857.17	ENSMUST00000137622.8	537	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	333.189416848735	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAGATGGTCTAAGCCTC	NA	False	NA	NA	False	NA	NA	NA	133004973	132994140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_132994233_132995506_132995638_132995719_132995817_132998273_132998359_133004841
transcript_65337.nnic	chr4	-	1246	3	NNC	ENSMUSG00000037622.15	novel	628	6	NA	NA	-8	-31322	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	28	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAAATCATTTTATTC	8379	False	NA	NA	False	NA	NA	NA	133080800	133072431	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_133073314_133080096_133080261_133080600
transcript_65339.known	chr4	-	628	6	FSM	ENSMUSG00000037622.15	ENSMUST00000135929.8	628	6	0	0	0	0	multi-exon	FALSE	canonical	3	471	junction_5	24.9911984506546	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTAACACGTTCTGGAGC	8990	False	NA	NA	False	NA	NA	NA	133080189	133036102	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_133036248_133040617_133040730_133041070_133041118_133049482_133049567_133051138_133051286_133080096
transcript_65340.known	chr4	+	4676	12	FSM	ENSMUSG00000028854.10	ENSMUST00000030669.8	4676	12	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_3	11.7922793063796	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCAGGGCTGCTTCCTGGG	157	False	NA	22	True	AATAAA	-23	NA	133097016	133151013	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_133098219_133139147_133139609_133142611_133142863_133143591_133143810_133145210_133145414_133146764_133146855_133147235_133147307_133147412_133147587_133147815_133147931_133148096_133148199_133148812_133148886_133149297
transcript_65341.known	chr4	+	2287	2	FSM	ENSMUSG00000046694.7	ENSMUST00000051676.7	2287	2	0	0	0	0	multi-exon	TRUE	canonical	3	34	junction_1	0	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAACTGTATCTTTCTCCT	NA	False	NA	13	True	AATAAA	-17	NA	133207442	133215249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_133207875_133213394
transcript_65342.known	chr4	-	1654	2	FSM	ENSMUSG00000056596.9	ENSMUST00000125541.2	1654	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGACGTGTGGTTTTAAGG	NA	False	NA	-4	True	AATAAA	-18	NA	133225861	133218410	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_133219142_133224938
transcript_65344.nic	chr4	+	1939	4	NIC	ENSMUSG00000037600.17	novel	1708	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	23.3666428910958	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGCCTGGTCATCAGTT	5471	False	NA	9	True	NA	NA	NA	133246273	133258101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_133246364_133255050_133256321_133257141_133257217_133257597
transcript_65345.known	chr4	+	1708	4	FSM	ENSMUSG00000037600.17	ENSMUST00000042919.16	1708	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	34.6698716467194	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGCCTGGTCATCAGTT	5500	False	NA	9	True	NA	NA	NA	133246302	133258101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_133246364_133255252_133256321_133257141_133257217_133257597
transcript_65346.nic	chr4	+	1935	4	NIC	ENSMUSG00000037600.17	novel	1699	4	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	21.9544984001001	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGCCTGGTCATCAGTT	5534	False	NA	9	True	NA	NA	NA	133246336	133258101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_133246423_133255050_133256321_133257141_133257217_133257597
transcript_65347.known	chr4	+	1699	4	FSM	ENSMUSG00000037600.17	ENSMUST00000105901.2	1699	4	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_1	34.198765409815	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATACACCTGCCTGGTCAT	5563	False	NA	4	True	NA	NA	NA	133246365	133258096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_133246423_133255252_133256321_133257141_133257217_133257597
transcript_65349.known	chr4	+	2256	3	FSM	ENSMUSG00000037600.17	ENSMUST00000121797.2	2256	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	22.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACACCTGCCTGGTCATCA	5591	False	NA	6	True	NA	NA	NA	133246393	133258098	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_133246423_133255050_133256321_133257141
transcript_6536.known	chr10	-	1254	3	FSM	ENSMUSG00000085451.3	ENSMUST00000125161.3	1254	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTCTGATATAAAATCACCT	NA	False	NA	NA	False	NA	NA	NA	24008378	23999111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_23999668_24001846_24002344_24008177
transcript_65361.known	chr4	-	1316	8	FSM	ENSMUSG00000028851.7	ENSMUST00000030665.7	1316	8	0	0	0	0	multi-exon	FALSE	canonical	3	2323	junction_4	508.87928082108	17418	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTCCCTCGTCTAGAC	4460	False	NA	NA	False	ATTAAA	-19	NA	133273307	133259852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_133260111_133260505_133260625_133260716_133260801_133261538_133261854_133262820_133262887_133262978_133263183_133268449_133268528_133273115
transcript_65362.known	chr4	+	1132	2	FSM	ENSMUSG00000037583.3	ENSMUST00000042706.3	1132	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTAGTTGCTTGTGGAA	NA	False	NA	NA	False	AATAAA	-17	NA	133280686	133283847	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_133281277_133283305
transcript_65364.known	chr4	+	1367	5	FSM	ENSMUSG00000028848.14	ENSMUST00000030661.14	1367	5	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_3	14.7394029729837	648	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGTTTTTTTAGTGTGTGT	NA	False	NA	41	True	NA	NA	NA	133311672	133319046	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_133312181_133313220_133313378_133315810_133315972_133317077_133317209_133318636
transcript_65367.known	chr4	+	996	5	FSM	ENSMUSG00000028848.14	ENSMUST00000105899.2	996	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	62.5154980784765	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGCAAAGGACTTCTAGAG	NA	False	NA	NA	False	NA	NA	NA	133311729	133318801	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_133312112_133313220_133313378_133315810_133315972_133317077_133317209_133318636
transcript_6537.known	chr10	+	3435	10	FSM	ENSMUSG00000019998.7	ENSMUST00000220041.2	3435	10	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_6	15.4632180063243	477	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTTTAGAATTGCTCTG	NA	False	NA	NA	False	AATAAA	-20	NA	24025224	24066120	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_24025307_24031132_24031283_24053063_24053134_24055014_24055109_24055823_24055962_24056760_24056814_24057415_24057513_24058666_24058740_24060884_24060968_24063525
transcript_65370.known	chr4	-	1613	1	FSM	ENSMUSG00000047281.4	ENSMUST00000057311.4	1613	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1073	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTTCAGTTATTGGC	9829	False	NA	-10	True	AATAAA	-18	NA	133329479	133327866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_133327900_133329500
transcript_65371.known	chr4	-	896	6	FSM	ENSMUSG00000037553.15	ENSMUST00000135999.8	896	6	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_4	22.3571017799714	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCACCCCTGAATGTGCT	9986	False	NA	NA	False	NA	NA	NA	133342878	133335979	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_133336085_133337680_133337794_133340233_133340337_133340949_133340999_133341111_133341250_133342490
transcript_65376.known	chr4	-	3979	4	FSM	ENSMUSG00000043257.16	ENSMUST00000062118.11	3979	4	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	27.7248384425711	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAAGTGCGTGG	NA	False	NA	NA	False	NA	NA	NA	133399958	133387697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_133390103_133391968_133393091_133397048_133397172_133399629
transcript_65377.known	chr4	-	990	3	FSM	ENSMUSG00000043257.16	ENSMUST00000067902.13	990	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	36	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTCTGTCTTCTTGTTTT	NA	False	NA	-2	True	NA	NA	NA	133399958	133389564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_133390103_133397048_133397172_133399629
transcript_65381.known	chr4	-	653	3	FSM	ENSMUSG00000043257.16	ENSMUST00000151837.2	653	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	56.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCCTGGCAGGAGCAGAG	NA	False	NA	NA	False	NA	NA	NA	133399958	133396067	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_133396269_133397048_133397172_133399629
transcript_65383.known	chr4	-	3964	10	FSM	ENSMUSG00000007880.17	ENSMUST00000138473.3	3964	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	34.300775645407	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATAAAAATTGAAAA	NA	False	NA	NA	False	NA	NA	NA	133481293	133416797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_133418591_133420109_133420220_133420315_133420462_133421068_133421382_133421973_133422142_133422882_133423468_133446847_133446965_133447860_133448311_133450149_133450363_133481224
transcript_65388.known	chr4	-	676	7	FSM	ENSMUSG00000003038.16	ENSMUST00000102552.8	676	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1026.87319351298	2560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAGAACACTTCATTACT	NA	False	NA	NA	False	NA	NA	NA	133695961	133692723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_133692885_133693261_133693358_133693739_133693791_133694076_133694107_133694267_133694313_133695105_133695221_133695783
transcript_65389.known	chr4	-	973	6	FSM	ENSMUSG00000003038.16	ENSMUST00000105893.8	973	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	1060.38683507482	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAAAAGTTGTTAAAACAA	NA	False	NA	NA	False	NA	NA	NA	133694752	133692300	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_133692885_133693261_133693358_133693739_133693791_133694076_133694107_133694267_133694313_133694585
transcript_65391.known	chr4	-	544	6	FSM	ENSMUSG00000003038.16	ENSMUST00000138458.8	544	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1063.29777579002	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGCTATATTGTTAGCACA	NA	False	NA	NA	False	TATAAA	-31	NA	133695961	133692740	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_133692885_133693261_133693358_133693739_133693791_133694076_133694107_133694267_133694313_133695783
transcript_65392.known	chr4	-	711	5	FSM	ENSMUSG00000003038.16	ENSMUST00000130809.8	711	5	0	0	0	0	multi-exon	FALSE	canonical	3	1835	junction_3	507.001664198452	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTATTTTTTATCAAGTTT	NA	False	NA	NA	False	NA	NA	NA	133695220	133692796	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_133692885_133693261_133693358_133693739_133694107_133694267_133694313_133695105
transcript_65393.known	chr4	-	630	5	FSM	ENSMUSG00000003038.16	ENSMUST00000137456.8	630	5	0	0	0	0	multi-exon	FALSE	canonical	3	1307	junction_3	698.493020723901	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTTTTTAAGCTATAT	NA	False	NA	NA	False	TATAAA	-21	NA	133694586	133692750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_133692885_133693261_133693358_133693739_133693791_133694076_133694107_133694267
transcript_65397.known	chr4	-	3133	9	FSM	ENSMUSG00000012117.14	ENSMUST00000012262.12	3133	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_8	23.2025725944344	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATACAAGGTTTGTGTGGT	NA	False	NA	NA	False	AAAAAG	-21	NA	133728198	133696367	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_133698565_133707434_133707543_133710110_133710226_133718589_133718692_133719774_133719892_133721472_133721616_133724132_133724250_133727579_133727651_133728035
transcript_65398.known	chr4	-	2038	9	FSM	ENSMUSG00000012117.14	ENSMUST00000105887.8	2038	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	18.0346887968714	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACGAGGACTGAACAGAAC	NA	False	NA	NA	False	AATACA	-19	NA	133728182	133697503	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_133698568_133707434_133707543_133710110_133710226_133718589_133718692_133719774_133719892_133721472_133721616_133724132_133724250_133727579_133727705_133728035
transcript_65400.known	chr4	-	890	9	FSM	ENSMUSG00000012117.14	ENSMUST00000105889.4	890	9	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_8	21.5928228816892	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTACGCTGAGGAGCGGA	NA	False	NA	NA	False	NA	NA	NA	133728229	133698553	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_133698565_133707434_133707543_133710110_133710226_133718589_133718692_133719774_133719892_133721472_133721616_133724132_133724250_133727579_133727705_133728177
transcript_65409.nic	chr4	-	613	4	NIC	ENSMUSG00000012117.14	novel	3179	10	NA	NA	0	-16365	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	33.3199973322661	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCCTGTAGTTTGAGAGT	NA	False	NA	NA	False	ACTAAA	-15	NA	133728229	133723869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_133724047_133724132_133724250_133727579_133727705_133728035
transcript_65411.known	chr4	-	3505	4	FSM	ENSMUSG00000050966.10	ENSMUST00000051674.3	3505	4	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	2.62466929133727	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCTCTGATGCTTAGGAC	8250	False	NA	9	True	AATAAA	-30	NA	133746152	133730640	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_133733633_133735221_133735407_133745363_133745561_133746021
transcript_65415.nic	chr4	+	1983	15	ISM	ENSMUSG00000012123.18	ENSMUST00000121391.8	4761	20	10279	3	-107	0	3prime_fragment	FALSE	canonical	3	24	junction_2	42.4615071781106	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTGCTGGTGGTCTCGTC	NA	False	NA	14	True	NA	NA	NA	133806041	133819812	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_133806289_133807646_133807774_133808090_133808127_133808399_133808537_133808663_133808791_133809039_133809180_133809266_133809394_133809725_133809759_133809885_133809999_133814796_133814927_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
transcript_65420.nic	chr4	+	1311	8	ISM	ENSMUSG00000012123.18	ENSMUST00000121391.8	4761	20	13694	3	-166	0	3prime_fragment	FALSE	canonical	3	103	junction_1	10.7532624380336	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTGCTGGTGGTCTCGTC	NA	False	NA	14	True	NA	NA	NA	133809456	133819812	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_133809759_133809885_133809999_133814796_133814927_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
transcript_65422.nnic	chr4	+	1181	7	NIC	ENSMUSG00000012123.18	novel	4761	20	NA	NA	-166	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_2	40.2478432824529	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTGCTGGTGGTCTCGTC	NA	False	NA	14	True	NA	NA	NA	133809456	133819812	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_133809759_133809885_133809999_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
transcript_65423.nic	chr4	+	1159	7	NIC	ENSMUSG00000012123.18	novel	4761	20	NA	NA	-127	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	39.282806530197	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTGCTGGTGGTCTCGTC	NA	False	NA	14	True	NA	NA	NA	133809495	133819812	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_133809759_133814796_133814927_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
transcript_65426.known	chr4	-	514	2	FSM	ENSMUSG00000000682.8	ENSMUST00000000696.7	514	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGTCCCACGTGTGATCG	NA	False	NA	-3	True	AATAAA	-19	NA	133822393	133820846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_133821212_133822244
transcript_65427.known	chr4	+	265	2	FSM	ENSMUSG00000012123.18	ENSMUST00000143295.2	265	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTATGCTGCTGGTGGTC	1978	False	NA	9	True	NA	NA	NA	133818460	133819807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_133818548_133819629
transcript_65435.known	chr4	+	1573	15	FSM	ENSMUSG00000012126.17	ENSMUST00000074690.11	1573	15	0	0	0	0	multi-exon	TRUE	canonical	3	35	junction_2	24.8785827078437	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGCTTCACAAGGCTCTC	NA	False	NA	15	True	AATAAA	-15	NA	133829893	133854087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_133829960_133835562_133835667_133836401_133836431_133836870_133836970_133839825_133839921_133840225_133840281_133840667_133840745_133843341_133843469_133850702_133850915_133851152_133851231_133852144_133852266_133852376_133852481_133853517_133853592_133853676_133853818_133853896
transcript_65451.known	chr4	+	583	8	FSM	ENSMUSG00000012126.17	ENSMUST00000156750.2	583	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	19.4264704746395	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGATGAAGGCCAAGAAGTT	NA	False	NA	NA	False	NA	NA	NA	133829928	133843437	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_133829960_133835562_133835667_133836404_133836431_133836870_133836970_133839825_133839921_133840225_133840281_133840667_133840745_133843341
transcript_65485.known	chr4	-	518	2	FSM	ENSMUSG00000028843.9	ENSMUST00000105879.2	518	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGACTGCTTGTGGTGT	9276	False	NA	-12	True	ATTAAA	-15	NA	133856050	133854723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_133855118_133855926
transcript_65486.known	chr4	-	743	3	FSM	ENSMUSG00000028843.9	ENSMUST00000030651.9	743	3	0	0	0	0	multi-exon	FALSE	canonical	3	1437	junction_2	42.5	9194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTGTGGTGTCCGGGTC	9226	False	NA	-5	True	ATTAAA	-22	NA	133856100	133854716	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_133855118_133855228_133855397_133855926
transcript_65488.known	chr4	-	1994	3	FSM	ENSMUSG00000028840.11	ENSMUST00000030644.8	1994	3	0	0	0	0	multi-exon	FALSE	canonical	3	614	junction_2	27	7060	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGTTATCTCTTGCTTT	7668	False	NA	7	True	NA	NA	NA	133972903	133970599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_133972242_133972335_133972399_133972614
transcript_65489.known	chr4	-	2020	2	FSM	ENSMUSG00000028840.11	ENSMUST00000129183.2	2020	2	0	0	0	0	multi-exon	FALSE	canonical	3	614	junction_1	0	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTATCAGTGTGCATGTAT	7718	False	NA	-11	True	NA	NA	NA	133972853	133970617	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_133972399_133972614
transcript_6549.known	chr10	+	3090	12	FSM	ENSMUSG00000020000.8	ENSMUST00000095784.3	3090	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	1.22643068756655	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTCAAAGAATTTTTACAC	NA	False	NA	NA	False	AATAAA	-28	NA	24099414	24178688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_24099766_24120137_24120285_24128360_24128529_24128829_24128914_24155263_24155444_24155740_24155844_24157315_24157483_24158460_24158653_24160653_24160714_24162904_24163048_24176053_24176223_24177362
transcript_65490.known	chr4	-	1226	2	FSM	ENSMUSG00000050105.6	ENSMUST00000060050.6	1226	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAGGACCATGAGTTTGG	3414	False	NA	-23	True	AATAAA	-18	NA	133981417	133978420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_133979570_133981340
transcript_65494.known	chr4	-	4509	3	FSM	ENSMUSG00000050890.16	ENSMUST00000105876.9	4509	3	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	10	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTGAAAGTTCTCTTGCT	4291	False	NA	NA	False	AATAAA	-18	NA	134014564	134002313	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_134006428_134011556_134011859_134014471
transcript_65495.known	chr4	-	4686	3	FSM	ENSMUSG00000050890.16	ENSMUST00000061234.14	4686	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	24	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGAAAGTTCTCTTGCTA	3649	False	NA	NA	False	AATAAA	-19	NA	134015206	134002312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_134006428_134011556_134011859_134014937
transcript_6550.known	chr10	+	2398	5	FSM	ENSMUSG00000019997.12	ENSMUST00000020171.12	2398	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	4.81534007106456	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAGGCTTGGCTGTTCAT	NA	False	NA	5	True	AATAAA	-21	NA	24471339	24474576	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_24471687_24471773_24471997_24472244_24472497_24472629_24472842_24473212
transcript_65500.known	chr4	-	573	3	FSM	ENSMUSG00000050890.16	ENSMUST00000127857.2	573	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	39	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAAAAGACTTACTAA	4294	False	NA	NA	False	NA	NA	NA	134014561	134006671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_134006853_134011556_134011859_134014471
transcript_65503.known	chr4	-	1039	2	FSM	ENSMUSG00000050890.16	ENSMUST00000142504.2	1039	2	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAACCCAACAA	4319	False	NA	NA	False	ATTAAA	-11	NA	134014536	134010884	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_134011859_134014471
transcript_65504.known	chr4	+	1886	9	FSM	ENSMUSG00000028834.14	ENSMUST00000105875.8	1886	9	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_7	6.8545149354276	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACTATGAAAGAAGTGTGA	NA	False	NA	NA	False	AATAAA	-28	NA	134042430	134056940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_134042694_134043697_134043871_134046942_134047112_134048493_134048590_134050314_134050549_134052355_134052379_134052894_134053020_134055015_134055094_134056215
transcript_65506.known	chr4	+	1855	9	FSM	ENSMUSG00000028834.14	ENSMUST00000030638.7	1855	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	9.40661336507459	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACAATGCTCTTTTCCTG	NA	False	NA	NA	False	AATAAA	-8	NA	134042432	134056920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_134042694_134043697_134043871_134046942_134047112_134048493_134048590_134050314_134050549_134052355_134052379_134052894_134053020_134055015_134055085_134056215
transcript_65509.known	chr4	+	3153	8	FSM	ENSMUSG00000028836.15	ENSMUST00000105874.9	3153	8	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_4	12.5324069711207	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTTTGCCTTGCAGA	2081	False	NA	16	True	AATAAA	-21	NA	134070516	134081795	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_134070648_134071318_134071528_134073213_134073361_134074650_134074805_134075787_134075957_134076595_134076702_134079261_134079397_134079693
transcript_65512.known	chr4	+	3102	8	FSM	ENSMUSG00000028836.15	ENSMUST00000105872.8	3102	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	95.9345014654716	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTATGAGTGTTTTGCC	2341	False	NA	9	True	AATAAA	-14	NA	134070776	134081788	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_134070864_134071318_134071528_134073213_134073361_134074650_134074805_134075787_134075957_134076595_134076702_134079261_134079397_134079693
transcript_65516.known	chr4	+	1224	7	FSM	ENSMUSG00000028836.15	ENSMUST00000105873.8	1224	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	102.834278763887	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGCAGATGAGGCCCCACT	2056	False	NA	NA	False	GGGGCT	-35	NA	134070491	134079988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_134070648_134071318_134071528_134074650_134074805_134075787_134075957_134076595_134076702_134079261_134079397_134079693
transcript_65517.known	chr4	+	2023	7	FSM	ENSMUSG00000028836.15	ENSMUST00000081094.6	2023	7	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_3	13.4587848221483	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGAGAGAAAAAGGGGGGA	2584	False	NA	NA	False	NA	NA	NA	134071019	134080497	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_134071528_134073213_134073361_134074650_134074805_134075787_134075957_134076595_134076702_134079261_134079397_134079693
transcript_65522.known	chr4	-	4126	11	FSM	ENSMUSG00000028838.12	ENSMUST00000030643.3	4126	11	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	6.57951365983839	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCGGGCTATAAATACGCT	7023	False	NA	0	True	AATAAA	-23	NA	134099869	134083682	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_134085142_134085288_134085458_134086395_134086557_134087059_134087147_134087842_134087933_134089611_134089719_134089893_134090027_134090393_134090514_134091891_134092000_134092208_134092300_134098268
transcript_65523.known	chr4	+	2248	11	FSM	ENSMUSG00000037366.15	ENSMUST00000105869.9	2248	11	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_4	4.79687398208458	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGGAAACTATTAACAGAGC	1779	False	NA	NA	False	NA	NA	NA	134123630	134153803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_134123736_134130280_134130416_134131403_134131555_134132316_134132414_134138214_134138284_134139077_134139217_134140652_134140767_134145352_134145445_134147179_134147351_134149688_134149844_134152783
transcript_65528.nnic	chr4	+	953	3	Antisense	novelGene_ENSMUSG00000087343.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	3	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGAGGCCTGTTTGTCTTG	8059	False	NA	NA	False	AATAAA	-21	NA	134172616	134176568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr4_+_134172869_134173675_134173823_134176014
transcript_65531.nnic	chr4	+	888	3	Antisense	novelGene_ENSMUSG00000087343.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	3	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGAGGCCTGTTTGTCTTG	8493	False	NA	NA	False	AATAAA	-21	NA	134173050	134176568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr4_+_134173238_134173675_134173823_134176014
transcript_6554.nic	chr10	-	1933	16	ISM	ENSMUSG00000019989.9	ENSMUST00000020169.9	4253	25	30182	1425	-8272	0	3prime_fragment	FALSE	canonical	1	2	junction_4	3.29983164553722	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTCTATTTTTCCTTAAC	NA	False	NA	NA	False	AATAAA	-1	NA	24681941	24649728	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_24649971_24650680_24650838_24652658_24652792_24653791_24653870_24654590_24654724_24660687_24660843_24662356_24662412_24663616_24663796_24667886_24667975_24669482_24669550_24671583_24671712_24673656_24673689_24674049_24674179_24675055_24675165_24680296_24680370_24681766
transcript_65541.known	chr4	+	802	5	FSM	ENSMUSG00000028832.12	ENSMUST00000105867.8	802	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	432.634011030108	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGGCTAGTTCTGTATT	NA	False	NA	NA	False	NA	NA	NA	134195719	134200975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_134195741_134197413_134197487_134197977_134198151_134200114_134200307_134200632
transcript_6556.known	chr10	+	4798	29	FSM	ENSMUSG00000019984.17	ENSMUST00000020159.15	4798	29	0	0	0	0	multi-exon	TRUE	canonical	2	39	junction_7	9.84419439392103	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTGACTGCTTTGTAAC	NA	False	NA	13	True	AATAAA	-20	NA	24745944	24789358	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_24746045_24746351_24746384_24746561_24746650_24749370_24749496_24750467_24750580_24751493_24751593_24752837_24752940_24754286_24754357_24755570_24755684_24758451_24758548_24764297_24764499_24767016_24767161_24768411_24768558_24769512_24769759_24771603_24771747_24773082_24773258_24774307_24774472_24776593_24776719_24777900_24778107_24778190_24778372_24779558_24779730_24780158_24780376_24781719_24781957_24783079_24783246_24783832_24783906_24784530_24784746_24785695_24785817_24786631_24786764_24788560
transcript_65565.known	chr4	+	612	2	FSM	ENSMUSG00000028832.12	ENSMUST00000130253.2	612	2	0	0	0	0	multi-exon	FALSE	canonical	3	455	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAGAAGCGCGCTTCAGG	NA	False	NA	NA	False	NA	NA	NA	134195709	134197994	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_134195741_134197413
transcript_65567.known	chr4	+	3550	3	FSM	ENSMUSG00000037348.16	ENSMUST00000095074.4	3550	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCCTTGATTCGATTTTT	NA	False	NA	NA	False	NA	NA	NA	134224314	134237546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_134224348_134227910_134227995_134234113
transcript_65568.known	chr4	+	2351	2	FSM	ENSMUSG00000037348.16	ENSMUST00000081525.4	2351	2	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTTGTTTTGACTCCTGT	NA	False	NA	19	True	AATAAA	-20	NA	134224007	134236124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_134224348_134234113
transcript_65570.known	chr4	+	1275	3	FSM	ENSMUSG00000078521.3	ENSMUST00000105866.3	1275	3	0	0	0	0	multi-exon	FALSE	canonical	3	435	junction_2	7.5	1808	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTTGGTGTCGTGCTTCC	NA	False	NA	20	True	AATAAA	-20	NA	134238309	134251238	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_134238481_134248782_134248913_134250264
transcript_65577.known	chr4	-	2025	7	FSM	ENSMUSG00000046671.19	ENSMUST00000102550.10	2025	7	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_6	159.506530691797	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGGTTCATCTCTGAGT	NA	False	NA	7	True	ATTAAA	-30	NA	134262579	134252860	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262392
transcript_65579.known	chr4	-	1969	7	FSM	ENSMUSG00000046671.19	ENSMUST00000116279.10	1969	7	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_6	102.782402298361	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTTTTCTTGGTTCATC	NA	False	NA	0	True	ATTAAA	-23	NA	134262698	134252867	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262560
transcript_6559.nnic	chr10	-	1019	6	NNC	ENSMUSG00000039166.17	novel	2092	8	NA	NA	20968	-2	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_5	50.2736511504784	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTGTTCTTACAGTTTC	NA	False	NA	NA	False	ATTAAA	-20	NA	25151030	25046021	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_25046301_25096508_25096657_25115523_25115637_25143205_25143367_25147402_25147540_25150849
transcript_65595.known	chr4	-	925	6	FSM	ENSMUSG00000046671.19	ENSMUST00000146808.2	925	6	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_5	112.150969679268	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCATCTCTCTGTCCAAG	NA	False	NA	NA	False	NA	NA	NA	134262698	134256487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262560
transcript_65599.known	chr4	-	6549	9	FSM	ENSMUSG00000037295.8	ENSMUST00000037828.8	6549	9	0	0	0	0	multi-exon	TRUE	canonical	3	50	junction_1	8.8175960442742	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	134495335	134468864	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_134474511_134475592_134475628_134476647_134476779_134477269_134477354_134477692_134477766_134482503_134482619_134484651_134484765_134486229_134486373_134495126
transcript_65600.nnic	chr4	+	1336	10	NNC	ENSMUSG00000028825.8	novel	701	5	NA	NA	7152	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	7.80471525726042	67	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACAAGGTCTCTTTCTTC	NA	False	NA	NA	False	ATTAAA	-18	NA	134598998	134623483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_134599031_134603625_134603813_134607200_134607352_134611324_134611488_134611829_134611994_134612560_134612699_134617612_134617741_134619533_134619614_134621644_134621719_134623264
transcript_65603.nic	chr4	+	1423	8	ISM	ENSMUSG00000028825.8	ENSMUST00000030627.8	1514	10	15048	0	-226	0	3prime_fragment	FALSE	canonical	3	9	junction_1	5.80288457473997	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACAAGGTCTCTTTCTTC	NA	False	NA	NA	False	ATTAAA	-18	NA	134606894	134623483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_134607352_134611324_134611488_134611829_134611994_134612560_134612699_134617612_134617741_134619533_134619614_134621644_134621719_134623264
transcript_65607.nnic	chr4	+	1023	8	NNC	ENSMUSG00000028825.8	novel	1514	10	NA	NA	3683	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	8.23630588879976	47	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACAAGGTCTCTTTCTTC	NA	False	NA	NA	False	ATTAAA	-18	NA	134610803	134623483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_134610861_134611324_134611488_134611829_134611994_134612560_134612699_134617612_134617741_134619533_134619614_134621644_134621719_134623264
transcript_65608.nnic	chr4	+	1026	8	NNC	ENSMUSG00000028825.8	novel	1514	10	NA	NA	3808	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	8.23630588879976	28	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACAAGGTCTCTTTCTTC	NA	False	NA	NA	False	ATTAAA	-18	NA	134610928	134623483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_134610989_134611324_134611488_134611829_134611994_134612560_134612699_134617612_134617741_134619533_134619614_134621644_134621719_134623264
transcript_6561.known	chr10	-	2321	2	FSM	ENSMUSG00000039166.17	ENSMUST00000100012.3	2321	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTTCTTCTTTTCTTTCC	NA	False	NA	0	True	AATAAA	-19	NA	25076056	25044987	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_25047147_25075894
transcript_65611.known	chr4	-	719	7	FSM	ENSMUSG00000028822.12	ENSMUST00000105863.2	719	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_6	233.0748568355	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCACCCTGCTCACCC	NA	False	NA	NA	False	NA	NA	NA	134642326	134625701	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_134625788_134628010_134628072_134630960_134631054_134632654_134632723_134636923_134637037_134640401_134640573_134642199
transcript_65616.known	chr4	-	1204	7	FSM	ENSMUSG00000028822.12	ENSMUST00000030626.12	1204	7	0	0	0	0	multi-exon	FALSE	canonical	3	544	junction_1	61.5938759582116	3712	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTTCTCGTTATACCTT	NA	False	NA	-20	True	ATTAAA	-19	NA	134642335	134625159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_134625788_134628010_134628072_134630960_134631054_134632654_134632723_134636923_134637037_134640401_134640507_134642199
transcript_6562.known	chr10	+	4115	18	FSM	ENSMUSG00000019978.17	ENSMUST00000218903.2	4115	18	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_1	40.1674694938122	227	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAATGTGTCACTTCTCT	NA	False	NA	NA	False	AATAAA	-14	NA	25235753	25399411	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_25235880_25317470_25317956_25319639_25319853_25336689_25336795_25343993_25344037_25345093_25345170_25347316_25347536_25348973_25349062_25354906_25355060_25355565_25355664_25360105_25360279_25364848_25364992_25377721_25378286_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388980_25398194
transcript_65620.known	chr4	+	2151	6	FSM	ENSMUSG00000037266.19	ENSMUST00000145364.8	2151	6	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_4	379.006385170488	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGGATGTTGAATGT	NA	False	NA	21	True	AATAAA	-21	NA	134650955	134654683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_134651079_134651185_134651794_134652603_134652744_134653087_134653133_134653336_134654130_134654241
transcript_65624.known	chr4	+	1749	5	FSM	ENSMUSG00000037266.19	ENSMUST00000078084.7	1749	5	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_3	305.166348079207	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTAGTTGTGAATGGTAG	NA	False	NA	9	True	NA	NA	NA	134650902	134654982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_134651079_134651185_134651794_134652603_134652744_134654045_134654130_134654241
transcript_65625.known	chr4	+	3051	4	FSM	ENSMUSG00000037266.19	ENSMUST00000148900.8	3051	4	0	0	0	0	multi-exon	FALSE	canonical	3	813	junction_2	40.8493165997507	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTAGTTGTGAATGGTAG	NA	False	NA	9	True	NA	NA	NA	134650902	134654982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_134651079_134651185_134651794_134652603_134654130_134654241
transcript_65626.known	chr4	+	1369	7	FSM	ENSMUSG00000028821.9	ENSMUST00000030622.3	1369	7	0	0	0	0	multi-exon	FALSE	canonical	3	670	junction_5	39.6628149390445	3930	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTGTCTGTAACTTAAACA	NA	False	NA	NA	False	AATAAA	-24	NA	134658208	134664859	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_134658330_134658490_134658596_134661766_134661893_134662242_134662361_134662684_134662776_134663293_134663393_134664150
transcript_65627.known	chr4	+	816	3	FSM	ENSMUSG00000028821.9	ENSMUST00000156334.8	816	3	0	0	0	0	multi-exon	FALSE	canonical	3	689	junction_1	40	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACAGCTGGCCTGGGCCTC	NA	False	NA	NA	False	NA	NA	NA	134658212	134662360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_134658330_134658490_134658596_134661766
transcript_65628.known	chr4	-	276	2	FSM	ENSMUSG00000086884.2	ENSMUST00000146152.2	276	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGACTCATTGTTGAAGCCC	6108	False	NA	NA	False	NA	NA	NA	134847758	134845531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_134845678_134847628
transcript_65630.known	chr4	-	4119	6	FSM	ENSMUSG00000037242.9	ENSMUST00000037099.9	4119	6	0	0	0	0	multi-exon	FALSE	canonical	3	1299	junction_1	75.0269284990396	778	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTCTTTTTTTTTTTTTT	NA	False	NA	0	True	AATAAA	-19	NA	135000125	134941279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_134944577_134945818_134946001_134950774_134950882_134953334_134953461_134966172_134966283_134999828
transcript_65631.known	chr4	-	3152	18	FSM	ENSMUSG00000028809.17	ENSMUST00000136342.9	3152	18	0	0	0	0	multi-exon	FALSE	canonical	3	663	junction_5	197.323579826916	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGTTTGACTATTGTTGG	NA	False	NA	-16	True	TTTAAA	-4	NA	135080555	135048404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
transcript_65632.known	chr4	-	3797	17	FSM	ENSMUSG00000028809.17	ENSMUST00000105861.8	3797	17	0	0	0	0	multi-exon	FALSE	canonical	3	283	junction_5	249.404846271579	486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCACTCACATTTATTCG	NA	False	NA	0	True	AATAAA	-19	NA	135080632	135047794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
transcript_65640.known	chr4	-	2847	4	FSM	ENSMUSG00000028809.17	ENSMUST00000134854.8	2847	4	0	0	0	0	multi-exon	FALSE	canonical	3	1232	junction_3	55.3955473541571	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGACAAAG	NA	False	NA	NA	False	NA	NA	NA	135080462	135070947	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_135071291_135071809_135074169_135074425_135074516_135080407
transcript_65643.known	chr4	-	1616	5	FSM	ENSMUSG00000043924.17	ENSMUST00000105858.8	1616	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	8.87059749960509	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTTTTGTCACCTTGCA	7519	False	NA	0	True	ATTAAA	-17	NA	135112966	135096886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_135098022_135099187_135099273_135104301_135104385_135107962_135108150_135112840
transcript_65647.known	chr4	-	1801	5	FSM	ENSMUSG00000043924.17	ENSMUST00000105859.8	1801	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	5.49431524395898	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTTTTGTCACCTTGCA	5729	False	NA	0	True	ATTAAA	-17	NA	135125501	135096886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_135098022_135099187_135099273_135104301_135104388_135107962_135108150_135125193
transcript_65651.known	chr4	-	958	5	FSM	ENSMUSG00000043924.17	ENSMUST00000105857.8	958	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	8.74642784226795	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGAGAGTGTTCCCCAGG	7529	False	NA	NA	False	NA	NA	NA	135112956	135097537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_135098022_135099187_135099273_135104301_135104388_135107962_135108150_135112840
transcript_65653.nnic	chr4	+	424	2	Antisense	novelGene_ENSMUSG00000043924.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAACGCTACTATTGTTGT	NA	False	NA	NA	False	NA	NA	NA	135095880	135098794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr4_+_135096077_135098566
transcript_65655.nic	chr4	-	950	5	NIC	ENSMUSG00000059713.13	novel	5111	5	NA	NA	20	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	31.244999599936	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCATTGAGCAGTCTCTTC	NA	False	NA	-4	True	AATAAA	-22	NA	135161114	135139618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_135139802_135145690_135145863_135147556_135147731_135152524_135152754_135160922
transcript_65656.known	chr4	-	5111	5	FSM	ENSMUSG00000059713.13	ENSMUST00000030606.14	5111	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	34.9311823447189	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCATTGAGCAGTCTCTTC	NA	False	NA	-4	True	AATAAA	-22	NA	135161164	135139618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_135143910_135145690_135145863_135147556_135147731_135152524_135152757_135160922
transcript_65657.known	chr4	-	724	4	FSM	ENSMUSG00000059713.13	ENSMUST00000156635.2	724	4	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	5.43650214343336	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAAGATGCGATGCCAGTG	NA	False	NA	NA	False	NA	NA	NA	135161134	135145753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_135145863_135147556_135147731_135152524_135152754_135160922
transcript_65658.nnic	chr4	+	959	3	Antisense	novelGene_ENSMUSG00000059713.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_2	1.5	23	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTCTCACGGTGGCTTTT	NA	False	NA	NA	False	NA	NA	NA	135147519	135154703	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr4_+_135147937_135151087_135151268_135154341
transcript_65663.known	chr4	-	5153	12	FSM	ENSMUSG00000028803.19	ENSMUST00000102549.10	5153	12	0	0	0	0	multi-exon	FALSE	canonical	2	39	junction_10	9.94031776933574	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCGGGTCCTGTGTTGCAC	4188	False	NA	-3	True	ATTAAA	-22	NA	135221934	135176202	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_135179884_135191096_135191192_135192998_135193063_135194157_135194247_135195816_135195953_135199195_135199293_135201634_135201781_135204743_135204804_135206846_135207019_135209782_135209852_135218243_135218594_135221740
transcript_65675.nnic	chr4	+	767	5	Antisense	novelGene_ENSMUSG00000028803.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_4	1.4142135623731	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGCCTCTCTGCCTAGC	NA	False	NA	NA	False	ATTAAA	-24	NA	135208843	135215864	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr4_+_135208926_135210853_135210924_135213663_135213801_135213929_135214103_135215559
transcript_65684.nic	chr4	+	1912	4	ISM	ENSMUSG00000028801.15	ENSMUST00000063707.3	2380	9	29113	104	29113	-104	3prime_fragment	FALSE	canonical	3	11	junction_1	4.02768199119819	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAAGCCGGGTTCTTTGTG	NA	False	NA	7	True	ATTAAA	-19	NA	135252410	135265010	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_135252843_135256802_135256969_135260949_135261141_135263887
transcript_65687.known	chr4	-	2789	16	FSM	ENSMUSG00000037188.8	ENSMUST00000105855.2	2789	16	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_6	62.4956531821747	908	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGGTTTTCATGCGCTTC	NA	False	NA	-2	True	AATAAA	-20	NA	135300941	135269198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_135270085_135273553_135273619_135275723_135275810_135276549_135276639_135277606_135277642_135279056_135279194_135279310_135279390_135279846_135280006_135281823_135281919_135283113_135283226_135283397_135283552_135284154_135284229_135284478_135284825_135286413_135286476_135288479_135288667_135300718
transcript_6569.known	chr10	-	542	3	FSM	ENSMUSG00000112803.2	ENSMUST00000217933.2	542	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTGTGCACGCATTCA	NA	False	NA	NA	False	NA	NA	NA	25583841	25577307	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_25577665_25581610_25581746_25583791
transcript_657.known	SIRV6	+	574	4	FSM	SIRV6A	SIRV607	574	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	10529.1711924538	10363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGCAGTCAAGTCGTAG	NA	False	NA	NA	False	NA	NA	NA	1130	2540	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV6_+_1187_1468_1736_1845_2027_2470
transcript_65708.known	chr4	+	1002	2	FSM	ENSMUSG00000086788.3	ENSMUST00000134416.2	1002	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTCCTGTGGTGTGAGCA	NA	False	NA	NA	False	TATAAA	-23	NA	135354084	135355796	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_135354357_135355066
transcript_65709.nnic	chr4	+	950	5	NNC	ENSMUSG00000062157.7	novel	4182	7	NA	NA	171	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	11.5217186218029	41	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAATGTGCACGCAGTTGT	NA	False	NA	7	True	AATAAA	-21	NA	135413768	135435492	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_135413911_135417832_135417957_135426100_135426283_135428538_135428682_135435133
transcript_6571.known	chr10	+	3651	15	FSM	ENSMUSG00000039031.17	ENSMUST00000039557.9	3651	15	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_6	3.14934395500694	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTCCTATTTACTACTA	NA	False	NA	103	True	AATAAA	-20	NA	26648472	26794644	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_26648693_26721927_26722125_26725870_26726107_26730869_26730934_26736552_26736729_26745916_26746083_26748668_26748761_26753152_26753231_26754886_26755047_26756683_26756767_26763776_26763984_26765727_26765869_26788602_26788728_26792388_26792451_26793000
transcript_65715.known	chr4	+	717	3	FSM	ENSMUSG00000028676.18	ENSMUST00000129718.2	717	3	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_2	671.5	496	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATTTTTTATTTTATTTT	4706	False	NA	NA	False	NA	NA	NA	135583442	135586542	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_135583603_135585615_135585783_135586152
transcript_65717.known	chr4	-	630	3	FSM	ENSMUSG00000028675.13	ENSMUST00000142585.2	630	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	185.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATTGCTCATAAGAAAAAGG	NA	False	NA	NA	False	AATAGA	-36	NA	135600881	135599634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_135599766_135600205_135600411_135600587
transcript_65718.known	chr4	-	1919	3	FSM	ENSMUSG00000028675.13	ENSMUST00000030436.12	1919	3	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_2	18.5	848	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACATTCTTTTTATGTAAG	NA	False	NA	-2	True	AATAAA	-27	NA	135601161	135598228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_135599766_135600205_135600411_135600984
transcript_65722.known	chr4	+	2525	8	FSM	ENSMUSG00000028673.11	ENSMUST00000030434.5	2525	8	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_1	34.7786000351964	559	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTGTTTGTTTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	135648045	135667622	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_135648462_135650277_135650413_135652859_135652998_135657209_135657316_135660209_135660411_135662000_135662192_135664233_135664334_135666384
transcript_65727.known	chr4	+	1418	9	FSM	ENSMUSG00000028672.14	ENSMUST00000030432.8	1418	9	0	0	0	0	multi-exon	FALSE	canonical	3	659	junction_3	79.965617611571	1387	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAAACGTGTGTTTATGGG	NA	False	NA	NA	False	ATTAAA	-23	NA	135673758	135689928	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_135673852_135677860_135677945_135679681_135679790_135681167_135681264_135682897_135683047_135686033_135686098_135687287_135687477_135688093_135688220_135689419
transcript_65729.known	chr4	+	1430	11	FSM	ENSMUSG00000028671.17	ENSMUST00000102541.10	1430	11	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	18.7712546197637	604	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGATTCTCACAGATGGC	4562	False	NA	11	True	AATAAA	-19	NA	135691037	135695489	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_135691100_135692644_135692768_135692876_135692993_135693313_135693428_135693680_135693858_135694123_135694238_135694322_135694390_135694481_135694568_135694662_135694741_135694899_135695015_135695111
transcript_6573.nnic	chr10	+	725	4	NNC	ENSMUSG00000019889.11	novel	1464	3	NA	NA	-13	-984	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	79.432710866214	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGAATGTAACTGGATTC	NA	False	NA	NA	False	AATAAA	-20	NA	27950836	28139685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_27951174_28082129_28082253_28124427_28124504_28139496
transcript_6574.known	chr10	+	1464	3	FSM	ENSMUSG00000019889.11	ENSMUST00000219761.2	1464	3	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_2	6	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCCTGTGTTGATTATTC	NA	False	NA	NA	False	NA	NA	NA	27951005	28140669	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_27951174_28082129_28082253_28139496
transcript_65740.known	chr4	-	1626	10	FSM	ENSMUSG00000028670.15	ENSMUST00000067567.5	1626	10	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_1	24.7476149243608	723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTCCCTTATGTGGTACA	NA	False	NA	-11	True	ATTAAA	-20	NA	135699937	135695534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_135696379_135696454_135696629_135696738_135696841_135696911_135696986_135697113_135697185_135697269_135697318_135697764_135697831_135697918_135697951_135698170_135698277_135699828
transcript_65741.known	chr4	-	1588	10	FSM	ENSMUSG00000028670.15	ENSMUST00000105852.8	1588	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_9	142.996848795462	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTCCCTTATGTGGTACA	NA	False	NA	-11	True	ATTAAA	-20	NA	135699240	135695534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_135696379_135696454_135696629_135696738_135696841_135696911_135696986_135697113_135697185_135697269_135697318_135697764_135697831_135697918_135697951_135698170_135698277_135699169
transcript_65742.known	chr4	-	1700	6	FSM	ENSMUSG00000028669.16	ENSMUST00000105851.9	1700	6	0	0	0	0	multi-exon	FALSE	canonical	3	496	junction_4	31.7893063780888	173	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAAGGTTCAGCCTCTGC	2115	False	NA	-3	True	AATAAA	-19	NA	135714575	135702770	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_135703808_135704459_135704569_135706107_135706213_135713251_135713330_135713702_135713747_135714248
transcript_65744.known	chr4	-	4708	11	FSM	ENSMUSG00000028668.6	ENSMUST00000030427.6	4708	11	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_6	17.5182761709022	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGAGCCTTTCCTCAT	7704	False	NA	-1	True	AATAAA	-17	NA	135749074	135730678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_135732989_135733481_135733661_135734422_135734535_135735090_135735272_135736356_135736455_135736556_135736713_135737060_135737176_135737539_135738720_135740180_135740288_135741710_135741768_135748861
transcript_65751.known	chr4	-	833	6	FSM	ENSMUSG00000059291.16	ENSMUST00000102536.11	833	6	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_1	3915.89487090754	46079	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGGTTTGGATTTGGTTG	NA	False	NA	-59	True	NA	NA	NA	135780704	135777041	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924_135779032_135779877_135780029_135780658
transcript_6576.nic	chr10	+	539	2	ISM	ENSMUSG00000019889.11	ENSMUST00000219761.2	1464	3	-188	58357	2	-58357	5prime_fragment	FALSE	canonical	3	171	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACAAGATTTTTTCACTT	NA	False	NA	NA	False	NA	NA	NA	27950817	28082312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_27951174_28082129
transcript_65769.known	chr4	-	397	4	FSM	ENSMUSG00000059291.16	ENSMUST00000128733.2	397	4	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_2	4326.60739558786	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGAACACATTGACCTGG	NA	False	NA	NA	False	NA	NA	NA	135780739	135778551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_135778614_135778924_135779028_135779877_135780029_135780658
transcript_6577.known	chr10	+	2364	1	FSM	ENSMUSG00000019889.11	ENSMUST00000219107.2	2364	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGCATTG	NA	False	NA	NA	False	ATTAAA	-19	NA	27950900	27953264	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_27950900_27953300
transcript_65771.known	chr4	-	807	5	FSM	ENSMUSG00000059291.16	ENSMUST00000125726.8	807	5	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_1	4361.44284469027	414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACTTGATCCAAAAAGCT	NA	False	NA	-47	True	NA	NA	NA	135780307	135777300	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924_135779032_135779877
transcript_65772.known	chr4	-	317	2	FSM	ENSMUSG00000059291.16	ENSMUST00000133613.2	317	2	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_1	0	811	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTACAGTTGTGTGTTTGT	NA	False	NA	-4	True	AATAAA	-40	NA	135777837	135777257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_135777328_135777590
transcript_65773.known	chr4	-	482	4	FSM	ENSMUSG00000059291.16	ENSMUST00000147059.8	482	4	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_3	4621.70800558504	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGCCAAACACAGAATCAGCA	NA	False	NA	NA	False	NA	NA	NA	135780065	135777642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_135777702_135778481_135778614_135778924_135779028_135779877
transcript_65774.known	chr4	-	622	5	FSM	ENSMUSG00000059291.16	ENSMUST00000155873.3	622	5	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_4	4504.49472749164	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAGCCGATTGTCCCACG	NA	False	NA	NA	False	NA	NA	NA	135780401	135777590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_135777702_135778481_135778614_135778924_135779032_135779877_135780029_135780280
transcript_65775.known	chr4	+	1278	3	FSM	ENSMUSG00000007872.4	ENSMUST00000008016.3	1278	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	1.5	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGACATCTTGCGCCAC	405	False	NA	11	True	AATAAA	-19	NA	135870807	135872703	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_135871490_135871604_135871688_135872190
transcript_65776.known	chr4	+	4225	25	FSM	ENSMUSG00000036995.8	ENSMUST00000047526.8	4225	25	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_10	6.55532014643238	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTTCTGGTGATTGGAAAG	1322	False	NA	NA	False	NA	NA	NA	135933675	135972527	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_135933959_135954718_135954792_135954873_135955020_135955709_135955785_135956710_135956761_135960549_135960662_135960874_135960961_135961334_135961411_135961638_135961726_135961894_135962005_135963685_135963756_135964007_135964096_135965486_135965536_135965642_135965831_135965909_135966044_135966202_135966298_135966491_135966670_135967428_135967515_135967661_135967778_135968316_135968385_135968465_135968577_135968683_135968880_135969966_135970193_135970758_135970853_135971099
transcript_65779.nic	chr4	+	1087	5	ISM	ENSMUSG00000036995.8	ENSMUST00000047526.8	4225	25	0	15307	0	-15307	5prime_fragment	FALSE	canonical	3	30	junction_2	3.35410196624968	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAACTCAGCCCTGAGAGG	1322	False	NA	NA	False	NA	NA	NA	135933675	135957220	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_135933959_135954718_135954792_135954873_135955020_135955709_135955785_135956710
transcript_65782.nnic	chr4	+	1303	11	NNC	ENSMUSG00000001604.15	novel	1251	11	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	307.780457469281	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAATGCTGAGCCCTGGAT	6593	False	NA	15	True	AATAAA	-26	NA	135975252	136002209	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_135975471_135981056_135981120_135981775_135981882_135982460_135982600_135985234_135985298_135991757_135991922_135992182_135992240_135995319_135995475_135998543_135998691_136000954_136001027_136002090
transcript_65786.known	chr4	+	1251	11	FSM	ENSMUSG00000001604.15	ENSMUST00000102533.11	1251	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	231.929816970565	1591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAATGCTGAGCCCTGGAT	6603	False	NA	15	True	AATAAA	-26	NA	135975262	136002209	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_135975429_135981056_135981120_135981775_135981882_135982460_135982600_135985234_135985298_135991757_135991922_135992182_135992240_135995319_135995475_135998543_135998691_136000954_136001027_136002090
transcript_65788.known	chr4	+	21452	11	FSM	ENSMUSG00000066037.15	ENSMUST00000148843.10	21452	11	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	138.01771625411	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGTGTTGTGCCTCATTT	NA	False	NA	NA	False	AATAAA	-17	NA	136038278	136086758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_136038401_136041397_136041567_136043671_136043791_136044394_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708_136059915_136063608_136063759_136066486_136066609_136066729
transcript_65790.known	chr4	+	2683	11	FSM	ENSMUSG00000066037.15	ENSMUST00000105850.8	2683	11	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_1	130.381325349914	607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTATTTCAAATTCAATTGT	NA	False	NA	32	True	AATAAA	-26	NA	136038278	136067992	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_136038401_136041400_136041567_136043671_136043791_136044394_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708_136059915_136063608_136063759_136066486_136066609_136066729
transcript_65791.known	chr4	+	2647	10	FSM	ENSMUSG00000066037.15	ENSMUST00000084219.12	2647	10	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_2	166.354225660371	610	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCATTGATTGGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	136038335	136068174	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_136038401_136043671_136043796_136044394_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708_136059915_136063608_136063759_136066486_136066609_136066729
transcript_65798.known	chr4	+	859	7	FSM	ENSMUSG00000066037.15	ENSMUST00000145282.8	859	7	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_3	205.839271169414	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCTGGAAGAGTTCAGTAA	NA	False	NA	NA	False	AATAAA	-13	NA	136038338	136056784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_136038401_136041400_136041567_136043671_136043796_136044394_136044503_136046704_136046819_136054546_136054724_136056676
transcript_6580.known	chr10	+	1845	6	FSM	ENSMUSG00000019883.12	ENSMUST00000160399.8	1845	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	32.6643536596088	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTTTATGTCCATTCCAG	NA	False	NA	2	True	AATAGA	-13	NA	29189161	29221556	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_29189294_29193502_29193719_29198270_29198414_29207814_29207868_29210186_29210268_29220336
transcript_65803.known	chr4	+	7526	5	FSM	ENSMUSG00000001089.15	ENSMUST00000170102.8	7526	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	50.5488624995657	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCCTTTGAGTCAGTGA	4157	False	NA	11	True	AATAAA	-17	NA	136197071	136276626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_136197162_136248651_136248755_136266435_136266528_136267666_136270830_136272548
transcript_65804.known	chr4	+	7438	4	FSM	ENSMUSG00000001089.15	ENSMUST00000105849.9	7438	4	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_2	34.7658836600865	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTGAGTCAGTGATGCC	4157	False	NA	15	True	AATAAA	-21	NA	136197071	136276630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_136197162_136248651_136248755_136267666_136270830_136272548
transcript_65805.known	chr4	+	418	2	FSM	ENSMUSG00000001089.15	ENSMUST00000142248.2	418	2	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTCATACGTTTTCTT	4199	False	NA	NA	False	NA	NA	NA	136197113	136249021	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_136197162_136248651
transcript_65806.known	chr4	+	683	2	FSM	ENSMUSG00000036921.3	ENSMUST00000046647.3	683	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCACTGTAGGTCTAAGAAC	5187	False	NA	NA	False	NA	NA	NA	136337747	136340537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_136337999_136340105
transcript_65807.known	chr4	-	1040	3	FSM	ENSMUSG00000036887.6	ENSMUST00000046285.6	1040	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCCGTGCAGTGGCTGGC	NA	False	NA	-1	True	AATAAA	-23	NA	136626114	136623227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_136624040_136624985_136625156_136626056
transcript_65828.known	chr4	-	2108	6	FSM	ENSMUSG00000006699.18	ENSMUST00000051477.13	2108	6	0	0	0	0	multi-exon	FALSE	canonical	3	1589	junction_5	116.347067002138	7993	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGAAGGTTATTTTCCTC	NA	False	NA	-1	True	ATTAAA	-24	NA	137085031	137047006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_137048504_137056023_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
transcript_65829.known	chr4	-	1448	6	FSM	ENSMUSG00000006699.18	ENSMUST00000030417.10	1448	6	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	708.103664727136	568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCTGGTGAAGCTTTATTC	NA	False	NA	NA	False	ATTAAA	-23	NA	137085010	137049072	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_137049931_137056023_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
transcript_6583.known	chr10	+	581	6	FSM	ENSMUSG00000019883.12	ENSMUST00000161605.8	581	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	36.9972971985792	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGACTGAGGAAAGTGTGAT	NA	False	NA	NA	False	NA	NA	NA	29189276	29220340	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_29189361_29193502_29193719_29198270_29198414_29207814_29207868_29210186_29210268_29220336
transcript_65830.known	chr4	-	1117	1	FSM	ENSMUSG00000101493.2	ENSMUST00000189334.2	1117	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTGTGCTAGTGTGTATT	2457	False	NA	NA	False	AATAAA	-29	NA	137115693	137114576	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_137114600_137115700
transcript_65831.known	chr4	+	378	1	FSM	ENSMUSG00000070667.8	ENSMUST00000116034.3	378	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	166	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGCTCATGTCAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	137122609	137122987	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_137122600_137123000
transcript_65832.known	chr4	+	1048	2	FSM	ENSMUSG00000041399.4	ENSMUST00000048893.4	1048	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACAGGGGCTCTTTTTCTC	NA	False	NA	NA	False	AATAAA	-14	NA	137180594	137182772	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_137180667_137181796
transcript_65834.nic	chr4	+	1437	10	ISM	ENSMUSG00000028763.19	ENSMUST00000030547.15	14187	97	-24	58547	-24	-16814	5prime_fragment	TRUE	canonical	3	21	junction_4	6.76227735764575	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGCCGTCCCTAGT	NA	False	NA	NA	False	ATTAAA	-15	NA	137196055	137239394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_137196236_137228369_137228506_137229586_137229632_137235111_137235222_137235320_137235380_137235614_137235776_137237852_137237982_137238217_137238473_137238556_137238677_137239152
transcript_65836.known	chr4	+	5722	28	FSM	ENSMUSG00000043411.16	ENSMUST00000055131.13	5722	28	0	0	0	0	multi-exon	FALSE	canonical	3	555	junction_19	271.050863574936	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTATCCGGAGTGAGTTC	570	False	NA	17	True	ATTAAA	-27	NA	137321517	137385842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343026_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352470_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137364244_137364299_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
transcript_65838.known	chr4	+	5741	27	FSM	ENSMUSG00000043411.16	ENSMUST00000105840.8	5741	27	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_13	294.548307788895	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTATCCGGAGTGAGTTC	503	False	NA	17	True	ATTAAA	-27	NA	137321450	137385842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343023_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352467_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
transcript_6584.known	chr10	+	3856	6	FSM	ENSMUSG00000019883.12	ENSMUST00000020034.6	3856	6	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_5	6.04648658313239	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATTTCCGTGTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	29189495	29223465	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_29189730_29193502_29193719_29198270_29198414_29207814_29207868_29210186_29210268_29220336
transcript_65841.known	chr4	+	2071	14	FSM	ENSMUSG00000043411.16	ENSMUST00000105839.8	2071	14	0	0	0	0	multi-exon	FALSE	canonical	3	659	junction_9	177.170128514572	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGTGTTCCGTGCTTCCA	570	False	NA	NA	False	AATAAA	-6	NA	137321517	137352602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343023_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352470
transcript_65845.nic	chr4	+	2166	11	ISM	ENSMUSG00000041351.17	ENSMUST00000097837.11	3168	23	11652	0	302	0	3prime_fragment	TRUE	canonical	3	50	junction_1	27.2552747188503	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCGGAGTTAAGAACAGCTT	NA	False	NA	11	True	AATAAA	-21	NA	137446484	137457172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_137446711_137447220_137447308_137447604_137447743_137449136_137449269_137452002_137452113_137452860_137452975_137454262_137454387_137454987_137455091_137455570_137455675_137455838_137455880_137456185
transcript_65851.known	chr4	-	2522	12	FSM	ENSMUSG00000028766.11	ENSMUST00000030551.11	2522	12	0	0	0	0	multi-exon	FALSE	canonical	3	1320	junction_11	106.491531498949	1821	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTGAGTCTTTGTGGTC	NA	False	NA	-2	True	AATAAA	-24	NA	137523695	137469043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
transcript_65863.nnic	chr4	-	445	3	Antisense	novelGene_ENSMUSG00000057530.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTCTGGTTTAATGATAT	NA	False	NA	NA	False	NA	NA	NA	137635954	137632502	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr4_-_137632710_137633268_137633323_137635770
transcript_65865.nnic	chr4	-	769	3	NNC	ENSMUSG00000085823.8	novel	714	2	NA	NA	-33	635	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	4.5	52	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTGGACTCCGCAGGGG	NA	False	NA	NA	False	NA	NA	NA	137611281	137609045	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_137609451_137610538_137610721_137611099
transcript_65866.nnic	chr4	-	850	3	NNC	ENSMUSG00000085823.8	novel	849	3	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_1	4.5	50	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTGTTTTGCCTTCATGT	NA	False	NA	NA	False	ATTAAA	-16	NA	137611281	137609680	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_137610167_137610538_137610721_137611099
transcript_65867.known	chr4	-	849	3	FSM	ENSMUSG00000085823.8	ENSMUST00000155349.8	849	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	7	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTGTTTTGCCTTCATGT	NA	False	NA	NA	False	ATTAAA	-16	NA	137611237	137609680	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_137610210_137610538_137610721_137611099
transcript_65868.known	chr4	+	3311	13	FSM	ENSMUSG00000028759.14	ENSMUST00000030541.13	3311	13	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	22.3320895176027	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTCCAGTACCTGTCCT	4565	False	NA	42	True	AATAAA	-40	NA	137943937	137970481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_137944052_137948836_137949035_137949399_137949500_137950800_137950961_137953199_137953360_137955954_137956099_137956990_137957069_137957674_137957827_137961553_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968756
transcript_65870.known	chr4	+	3361	13	FSM	ENSMUSG00000028759.14	ENSMUST00000165861.8	3361	13	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	26.2752524039045	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTCCAGTACCTGTCCT	5069	False	NA	42	True	AATAAA	-40	NA	137944441	137970481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_137944606_137948836_137949035_137949399_137949500_137950800_137950961_137953199_137953360_137955954_137956099_137956990_137957069_137957674_137957827_137961553_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968756
transcript_65871.known	chr4	+	3113	12	FSM	ENSMUSG00000028759.14	ENSMUST00000097836.10	3113	12	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	20.9126479187884	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTCCAGTACCTGTCCT	4565	False	NA	42	True	AATAAA	-40	NA	137943937	137970481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_137944052_137949399_137949500_137950800_137950961_137953199_137953360_137955954_137956099_137956990_137957069_137957674_137957827_137961553_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968756
transcript_65875.known	chr4	+	810	6	FSM	ENSMUSG00000028759.14	ENSMUST00000137851.8	810	6	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_4	46.9195055387416	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTCTGTCCCCGAGCTT	5065	False	NA	NA	False	AAAACA	-6	NA	137944437	137957068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_137944606_137949399_137949500_137950800_137950961_137953199_137953364_137955958_137956099_137956990
transcript_65876.known	chr4	+	2120	11	FSM	ENSMUSG00000028757.5	ENSMUST00000030538.5	2120	11	0	0	0	0	multi-exon	FALSE	canonical	3	2240	junction_8	67.8427593778437	971	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGTGTTCTTTTAGTTC	NA	False	NA	37	True	NA	NA	NA	138032040	138039939	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_138032350_138032465_138032577_138035553_138035641_138036660_138036765_138036900_138036996_138037494_138037589_138037913_138038063_138038151_138038300_138038720_138038842_138038950_138039058_138039144
transcript_65877.known	chr4	-	2375	8	FSM	ENSMUSG00000028756.13	ENSMUST00000030536.13	2375	8	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_7	15.5261464790783	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATGTGTACACTGGAGC	NA	False	NA	-9	True	ATTAAA	-16	NA	138053618	138040722	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_138041525_138042807_138043045_138043314_138043443_138044615_138044780_138045206_138045390_138047299_138047401_138048048_138048334_138053143
transcript_65878.known	chr4	-	846	4	FSM	ENSMUSG00000028755.4	ENSMUST00000030535.4	846	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTTTTTGTTCTTAGTCT	NA	False	NA	NA	False	TATAAA	-29	NA	138095303	138065838	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_138066312_138070817_138070876_138078494_138078607_138095100
transcript_65879.known	chr4	+	215	1	FSM	ENSMUSG00000083326.5	ENSMUST00000117723.2	215	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1475	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGCCCTCTGCGTGTGAC	5631	False	NA	NA	False	NA	NA	NA	138153098	138153313	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_138153100_138153300
transcript_65880.nic	chr4	+	1600	5	NIC	ENSMUSG00000041241.13	novel	3944	5	NA	NA	-9	892	combination_of_known_junctions	FALSE	canonical	3	9	junction_2	95.7584852637091	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAAGGCCAGTCCTCTCCG	NA	False	NA	14	True	NA	NA	NA	138161972	138167214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_138162191_138163490_138163711_138164938_138165027_138165552_138165674_138166261
transcript_65882.known	chr4	+	3733	4	FSM	ENSMUSG00000041241.13	ENSMUST00000044058.11	3733	4	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_3	1.24721912892465	940	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTTGGTTGTGGCTGGAT	NA	False	NA	24	True	NA	NA	NA	138161981	138169576	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_138162191_138164938_138165027_138165552_138165674_138166261
transcript_65883.known	chr4	+	473	4	FSM	ENSMUSG00000041241.13	ENSMUST00000105815.2	473	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	94.9888882390403	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGAGGACGGCGTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	138162033	138166322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_138162191_138164938_138165027_138165552_138165720_138166261
transcript_65886.known	chr4	+	4444	2	FSM	ENSMUSG00000046447.4	ENSMUST00000050918.4	4444	2	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_1	0	490	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATAGTATTGGGTGAGCAT	5744	False	NA	NA	False	AATAAA	-14	NA	138181624	138187434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_138182663_138184028
transcript_65887.known	chr4	+	737	6	FSM	ENSMUSG00000028750.13	ENSMUST00000124660.7	737	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.01980390271856	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAGAAGGCCTTCAAGCAG	NA	False	NA	NA	False	NA	NA	NA	138452635	138471005	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_138452800_138453041_138453169_138458834_138458936_138461572_138461718_138463292_138463397_138470909
transcript_65891.nnic	chr4	-	902	3	NNC	ENSMUSG00000043621.14	novel	2460	4	NA	NA	13281	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.5	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGGTTATTGTCCCAAGT	NA	False	NA	NA	False	AATAAA	-17	NA	138438886	138437147	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_138437638_138437961_138438274_138438786
transcript_65895.known	chr4	-	2465	5	FSM	ENSMUSG00000028749.8	ENSMUST00000030526.7	2465	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	0.707106781186548	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGCTGGGTCCTTCTTAG	NA	False	NA	NA	False	AATAAA	-21	NA	138484937	138477843	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_138479735_138480573_138480684_138481436_138481582_138484017_138484071_138484671
transcript_65897.known	chr4	+	1206	4	FSM	ENSMUSG00000041202.13	ENSMUST00000105806.2	1206	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGCCCCTGACTCAGGCT	NA	False	NA	NA	False	NA	NA	NA	138505204	138508436	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_138505281_138505951_138506097_138506659_138506767_138507558
transcript_65901.nnic	chr4	+	1195	3	Intergenic	novelGene_92	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACCCCTCCCCACCCCC	NA	False	NA	NA	False	NA	NA	NA	138498940	138524400	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr4_+_138499933_138500499_138500605_138524302
transcript_65906.known	chr4	-	2131	6	FSM	ENSMUSG00000041193.16	ENSMUST00000030524.14	2131	6	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	8.52291030106501	502	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCACATGTTTTGGTGTA	NA	False	NA	-5	True	AATAAA	-24	NA	138590780	138526559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_138527973_138528662_138528770_138531817_138531963_138533495_138533546_138546310_138546427_138590480
transcript_6591.known	chr10	-	945	4	FSM	ENSMUSG00000038876.13	ENSMUST00000161508.3	945	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	93.3821301011185	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACATCAGTTGATGGTCAG	NA	False	NA	NA	False	NA	NA	NA	29238022	29223214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_29223880_29230287_29230444_29237280_29237342_29237959
transcript_65913.known	chr4	+	786	4	FSM	ENSMUSG00000028751.14	ENSMUST00000105804.2	786	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	6.79869268479038	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCTTCCATTATTTCTTC	NA	False	NA	NA	False	NA	NA	NA	138606670	138610128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_138606808_138607661_138607801_138607980_138608088_138609725
transcript_65914.nnic	chr4	+	858	4	NNC	ENSMUSG00000028751.14	novel	786	4	NA	NA	-57	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10.4986771653491	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCTTCCATTATTTCTTC	NA	False	NA	NA	False	NA	NA	NA	138606613	138610128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_138606808_138607646_138607801_138607980_138608088_138609725
transcript_65917.known	chr4	+	854	5	FSM	ENSMUSG00000028751.14	ENSMUST00000030531.14	854	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	9.53939201416946	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCTTCCATTATTTCTTC	NA	False	NA	NA	False	NA	NA	NA	138605252	138610128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_138605384_138606733_138606808_138607661_138607801_138607980_138608088_138609725
transcript_65919.known	chr4	+	3318	17	FSM	ENSMUSG00000041143.17	ENSMUST00000050949.9	3318	17	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	8.00780868902348	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTAAGGGTTCTTCTTTTC	NA	False	NA	24	True	AATAAA	-15	NA	138700215	138786478	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_138700599_138704518_138704634_138710931_138711077_138712442_138712562_138717852_138718032_138723708_138723884_138725334_138725363_138737779_138737913_138746883_138746982_138747356_138747501_138748169_138748290_138748931_138749097_138750241_138750379_138757139_138757225_138779811_138779930_138781210_138781329_138785422
transcript_6592.known	chr10	-	781	4	FSM	ENSMUSG00000038876.13	ENSMUST00000214896.2	781	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	95.3601360923712	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGATATAATAGATATACCA	NA	False	NA	NA	False	AATATA	-37	NA	29238043	29223379	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_29223880_29230287_29230444_29237280_29237342_29237979
transcript_65928.nic	chr4	+	1320	7	ISM	ENSMUSG00000041143.17	ENSMUST00000050949.9	3318	17	256	60684	252	7763	5prime_fragment	FALSE	canonical	3	56	junction_1	8.09835374217089	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGTGGCTCCTTGTAGC	NA	False	NA	NA	False	AATAGA	-29	NA	138700471	138725794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_138700599_138704518_138704634_138710931_138711077_138712442_138712562_138717852_138718032_138723708_138723884_138725334
transcript_65936.known	chr4	+	2922	16	FSM	ENSMUSG00000041143.17	ENSMUST00000043042.10	2922	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	19.2879928107273	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGGTTCTTCTTTTCACCT	NA	False	NA	28	True	AATAAA	-19	NA	138700202	138786482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_138700301_138710931_138711077_138712442_138712562_138717852_138718032_138723708_138723884_138725334_138725363_138737779_138737913_138746883_138746982_138747356_138747501_138748169_138748290_138748931_138749097_138750241_138750379_138757139_138757225_138779811_138779930_138781210_138781329_138785422
transcript_65943.known	chr4	-	476	4	FSM	ENSMUSG00000050608.12	ENSMUST00000154642.2	476	4	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_3	1213.91661804078	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAACGCTTTCAACTCCAG	5298	False	NA	-131	True	NA	NA	NA	138858305	138831212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_138831324_138832300_138832411_138833166_138833215_138858098
transcript_65947.known	chr4	-	2549	4	FSM	ENSMUSG00000050608.12	ENSMUST00000143971.2	2549	4	0	0	0	0	multi-exon	FALSE	canonical	3	2580	junction_1	67.4553350167518	15425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTCTGCCTTCCTCGG	5179	False	NA	NA	False	AATAAA	-38	NA	138858424	138829124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_138831324_138832300_138832411_138833166_138833215_138858232
transcript_65953.known	chr4	+	1390	9	FSM	ENSMUSG00000028745.19	ENSMUST00000030518.16	1390	9	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	549.5206433793	1107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAACTGGTGTGTGAGAGAA	NA	False	NA	10	True	AAAACA	-15	NA	138921306	139018751	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_138921531_138966219_138966310_138984571_138984694_138989294_138989409_139007306_139007449_139007778_139007896_139014339_139014406_139015066_139015144_139018313
transcript_65964.known	chr4	+	1674	9	FSM	ENSMUSG00000028745.19	ENSMUST00000102508.10	1674	9	0	0	0	0	multi-exon	FALSE	canonical	3	1402	junction_1	117.624136553685	7358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGCGCTGGCTGTACGTTC	NA	False	NA	8	True	NA	NA	NA	138920209	139019129	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_138920340_138966219_138966310_138984571_138984694_138989294_138989409_139007306_139007449_139007778_139007896_139014339_139014406_139015066_139015144_139018313
transcript_65965.known	chr4	+	1702	10	FSM	ENSMUSG00000028745.19	ENSMUST00000102507.10	1702	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	666.472545811894	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGGAAAA	NA	False	NA	-52	True	NA	NA	NA	138920234	139019069	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_138920340_138966219_138966310_138984571_138984694_138989294_138989409_139007306_139007449_139007778_139007896_139014339_139014406_139015066_139015144_139016171_139016285_139018313
transcript_65969.known	chr4	-	1405	9	FSM	ENSMUSG00000028744.16	ENSMUST00000172747.8	1405	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_7	44.5112345369121	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGCCTGTTTCTGCTGC	NA	False	NA	-5	True	AGTAAA	-13	NA	139037976	139025840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_139026281_139027536_139027723_139028322_139028416_139028560_139028704_139029100_139029189_139029735_139029866_139033753_139033920_139035039_139035162_139037939
transcript_6597.known	chr10	-	1948	3	FSM	ENSMUSG00000038876.13	ENSMUST00000160372.9	1948	3	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_2	66.5	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATAATTTGTTTGAGTC	NA	False	NA	NA	False	AATAAA	-15	NA	29238043	29222171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_29223880_29230287_29230444_29237959
transcript_65970.known	chr4	-	1532	9	FSM	ENSMUSG00000028744.16	ENSMUST00000053862.12	1532	9	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_8	18.155147341732	558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCCTGTTTCTGCTGCTC	NA	False	NA	-3	True	AGTAAA	-15	NA	139038019	139025838	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_139026281_139027536_139027723_139028322_139028416_139028560_139028704_139029100_139029189_139029735_139029866_139033753_139034002_139035039_139035162_139037939
transcript_65975.nnic	chr4	-	1100	6	NNC	ENSMUSG00000028744.16	novel	1405	9	NA	NA	8226	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_5	55.3664158131985	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGCCTGTTTCTGCTGC	NA	False	NA	-5	True	AGTAAA	-13	NA	139029722	139025840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_139026281_139027536_139027723_139028322_139028416_139028560_139028704_139029100_139029189_139029572
transcript_65978.known	chr4	+	1288	7	FSM	ENSMUSG00000028743.8	ENSMUST00000073787.7	1288	7	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_5	35.9787746070127	651	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCGTCTCCTCTGCTGCCC	NA	False	NA	29	True	AATAAA	-40	NA	139038054	139045737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_139038388_139041414_139041603_139041777_139041883_139044020_139044118_139044244_139044345_139044880_139045011_139045402
transcript_6598.known	chr10	-	4323	3	FSM	ENSMUSG00000038876.13	ENSMUST00000160144.9	4323	3	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_2	74.5	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTTGTTTCAACTTTTC	NA	False	NA	2	True	AATAAA	-20	NA	29238438	29220171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_29223880_29230287_29230444_29237979
transcript_65986.known	chr4	-	930	8	FSM	ENSMUSG00000028741.14	ENSMUST00000030513.13	930	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	364.486667262665	1562	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGACTCTTTCTTTTTTTT	5974	False	NA	-12	True	AATAAA	-34	NA	139079609	139074755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_139075114_139075231_139075309_139075631_139075784_139075992_139076061_139076316_139076399_139076924_139077029_139077746_139077806_139079579
transcript_65988.known	chr4	+	4706	23	FSM	ENSMUSG00000078517.13	ENSMUST00000042096.15	4706	23	0	0	0	0	multi-exon	FALSE	canonical	3	332	junction_13	34.6303979591618	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGCATTCCTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	139079920	139104547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_139080029_139081471_139081597_139082122_139082189_139082402_139082497_139084813_139084943_139086550_139086678_139087340_139087491_139087767_139087936_139088190_139088263_139088572_139088636_139089406_139089530_139090476_139090574_139090967_139091091_139092505_139092706_139092828_139092979_139093685_139093848_139094404_139094525_139097185_139097324_139098234_139098409_139098906_139099118_139101119_139101205_139102390_139102521_139102656
transcript_65989.known	chr4	+	413	2	FSM	ENSMUSG00000078517.13	ENSMUST00000144335.2	413	2	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCGGGCGTGGTGGCACA	NA	False	NA	NA	False	NA	NA	NA	139079919	139081775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_139080029_139081471
transcript_65990.known	chr4	+	3382	15	FSM	ENSMUSG00000028737.16	ENSMUST00000039818.10	3382	15	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_3	22.7807876447301	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTTGATCGTGTGTGTC	NA	False	NA	26	True	NA	NA	NA	139350176	139377001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_139350509_139361025_139361120_139361207_139361301_139361974_139362023_139362699_139362856_139364269_139364420_139364496_139364572_139365685_139365874_139367923_139367998_139369387_139369585_139369824_139369873_139370700_139370854_139371422_139371545_139372289_139372409_139375468
transcript_65992.nnic	chr4	+	2305	7	NNC	ENSMUSG00000028737.16	novel	4142	15	NA	NA	18725	0	intron_retention	FALSE	canonical	3	14	junction_1	86.9471423081607	111	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTTGATCGTGTGTGTC	5537	False	NA	26	True	NA	NA	NA	139369144	139377001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_139369278_139369387_139369585_139369824_139369873_139370700_139370854_139371422_139371545_139372289_139372409_139375468
transcript_65993.known	chr4	-	1979	10	FSM	ENSMUSG00000040972.9	ENSMUST00000039331.9	1979	10	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_6	13.4421485642992	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGCCCTATATTTTTC	NA	False	NA	1	True	ATTAAA	-28	NA	139974095	139754156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_139754390_139755034_139755074_139755359_139755553_139756008_139756095_139761661_139762137_139764733_139764850_139794447_139794567_139834565_139834688_139884771_139884885_139973612
transcript_65996.nic	chr4	-	1489	6	ISM	ENSMUSG00000040972.9	ENSMUST00000039331.9	1979	10	208899	0	208899	0	3prime_fragment	FALSE	canonical	3	64	junction_3	14.9184449591772	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGCCCTATATTTTTC	NA	False	NA	1	True	ATTAAA	-28	NA	139765196	139754156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_139754390_139755034_139755074_139755359_139755553_139756008_139756095_139761661_139762137_139764733
transcript_65998.nnic	chr4	-	746	5	NNC	ENSMUSG00000040972.9	novel	1979	10	NA	NA	213783	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	38.4016601203646	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGCCCTATATTTTTC	NA	False	NA	1	True	ATTAAA	-28	NA	139760312	139754156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_139754390_139755034_139755074_139755359_139755553_139756008_139756095_139760117
transcript_65999.nic	chr4	-	1198	5	ISM	ENSMUSG00000040972.9	ENSMUST00000039331.9	1979	10	211787	0	211787	0	3prime_fragment	FALSE	canonical	3	64	junction_3	15.3195136998535	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGCCCTATATTTTTC	NA	False	NA	1	True	ATTAAA	-28	NA	139762308	139754156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_139754390_139755034_139755074_139755359_139755553_139756008_139756095_139761661
transcript_66.known	ERCC-00142	+	478	1	FSM	ERCC-00142A	DQ883646	478	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	478	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00142_+_0_500
transcript_66008.known	chr4	+	1720	3	FSM	ENSMUSG00000087084.2	ENSMUST00000126252.2	1720	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	12.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAGAAAAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	140107940	140112885	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_140108031_140109400_140109529_140111383
transcript_66010.nic	chr4	+	683	2	ISM	ENSMUSG00000087084.2	ENSMUST00000126252.2	1720	3	-196	3088	-196	-3088	5prime_fragment	FALSE	canonical	3	28	junction_1	0	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCCTTTTTTTGGCTGGGG	NA	False	NA	NA	False	NA	NA	NA	140107744	140109797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_140108031_140109400
transcript_66015.nnic	chr4	-	797	3	Antisense	novelGene_ENSMUSG00000086159.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_2	2	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGAGGAGAGGTTGGAGG	NA	False	NA	NA	False	NA	NA	NA	140412456	140410725	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr4_-_140411134_140411591_140411749_140412224
transcript_66017.known	chr4	+	1163	4	FSM	ENSMUSG00000086159.2	ENSMUST00000141469.2	1163	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAATTGGAGACACAAGGAC	NA	False	NA	NA	False	AATAAA	-18	NA	140407063	140411928	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_140407214_140410054_140410207_140410346_140410674_140411394
transcript_66019.nnic	chr4	+	1633	12	NNC	ENSMUSG00000040945.14	novel	3999	15	NA	NA	2396	-1750	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	1322.08953698365	705	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTAAGTTGTATTTCTTT	4777	False	NA	13	True	NA	NA	NA	140431179	140448781	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_140431263_140435261_140435356_140437643_140437788_140439441_140439574_140439896_140439986_140440709_140440825_140443176_140443344_140444330_140444512_140444935_140445042_140445650_140445724_140447855_140447934_140448410
transcript_66025.nic	chr4	-	909	4	ISM	ENSMUSG00000040935.13	ENSMUST00000038749.11	2333	16	11511	0	1911	0	intron_retention	FALSE	canonical	3	19	junction_1	1.24721912892465	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTTTACGCCGCCTGAC	NA	False	NA	NA	False	AATAAA	-19	NA	140458443	140454665	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_140455121_140456177_140456340_140457019_140457091_140458222
transcript_66026.known	chr4	-	2316	16	FSM	ENSMUSG00000025330.7	ENSMUST00000026381.7	2316	16	0	0	0	0	multi-exon	TRUE	canonical	3	76	junction_4	15.9114214743163	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTTAGTTTACCACGGAG	NA	False	NA	-11	True	AATAAA	-14	NA	140501547	140473175	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_140473669_140475396_140475538_140475768_140475837_140477659_140477763_140477891_140478037_140479841_140479997_140483683_140483792_140484812_140484925_140485132_140485237_140485332_140485512_140487248_140487375_140488911_140489030_140490705_140490774_140492881_140492949_140496621_140496803_140501399
transcript_66030.nic	chr4	-	1724	11	ISM	ENSMUSG00000025330.7	ENSMUST00000026381.7	2316	16	-113	6421	-113	0	5prime_fragment	FALSE	canonical	3	81	junction_9	12.9398608956974	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACGAGTAAGATAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	140501660	140479596	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_140479997_140483683_140483792_140484812_140484925_140485132_140485237_140485332_140485512_140487248_140487375_140488911_140489030_140490705_140490774_140492881_140492949_140496621_140496803_140501399
transcript_66034.known	chr4	-	3072	16	FSM	ENSMUSG00000025328.10	ENSMUST00000026377.9	3072	16	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_8	5.0710507348631	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGGGTGTTGGCCTTTC	NA	False	NA	0	True	AATAAA	-14	NA	140537959	140512675	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_140513946_140516147_140516274_140517023_140517104_140518473_140518577_140518668_140518814_140520288_140520441_140521147_140521256_140522923_140523036_140523123_140523228_140523647_140523827_140525359_140525486_140526215_140526334_140527391_140527454_140528855_140528929_140530777_140530959_140537826
transcript_66042.nnic	chr4	+	1788	2	NNC	ENSMUSG00000085918.2	novel	2001	3	NA	NA	2862	-1	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	0	71	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGTGTATGGGTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	140541165	140544821	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_140542139_140544006
transcript_66044.nic	chr4	+	2351	8	ISM	ENSMUSG00000028927.7	ENSMUST00000030765.7	4774	16	26803	1397	8988	-1397	3prime_fragment	FALSE	canonical	3	24	junction_3	9.73527144994333	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTACCTATAACTCTAGTTC	NA	False	NA	NA	False	NA	NA	NA	140660457	140678500	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_140660596_140661926_140662035_140663830_140663983_140665230_140665376_140671752_140671847_140673988_140674075_140676522_140676652_140677001
transcript_66047.nnic	chr4	+	1008	3	NNC	ENSMUSG00000028927.7	novel	4774	16	NA	NA	4	-7984	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	26.5	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTGGTCTAAGTAACGAAC	NA	False	NA	NA	False	NA	NA	NA	140633658	140652114	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_140633861_140644883_140645670_140652094
transcript_66056.known	chr4	+	1142	8	FSM	ENSMUSG00000009863.15	ENSMUST00000010007.9	1142	8	0	0	0	0	multi-exon	FALSE	canonical	3	2820	junction_2	205.868890316143	23730	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGCGTTACTCTCCATTAT	NA	False	NA	NA	False	AATAAA	-14	NA	140688513	140706504	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_140688788_140693805_140693940_140698447_140698534_140700193_140700331_140700974_140701092_140703425_140703528_140704688_140704812_140706335
transcript_66058.known	chr4	+	3956	29	FSM	ENSMUSG00000036622.16	ENSMUST00000037055.14	3956	29	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_19	18.6368011510253	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGGCACTGGTCTTGT	1402	False	NA	12	True	AATAAA	-17	NA	140714183	140734641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_140714388_140719442_140719538_140719648_140719832_140721106_140721166_140721258_140721374_140721622_140721703_140722636_140722715_140722868_140722939_140723612_140723748_140723834_140723902_140723978_140724111_140726438_140726595_140727653_140727765_140727853_140727901_140727995_140728185_140729194_140729402_140729767_140729858_140729934_140730095_140730209_140730331_140730461_140730587_140731196_140731358_140731492_140731598_140731678_140731759_140732312_140732466_140732576_140732674_140733353_140733578_140733662_140733815_140733989_140734160_140734251
transcript_66059.known	chr4	+	4266	26	FSM	ENSMUSG00000036622.16	ENSMUST00000151517.8	4266	26	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_18	19.0286520804812	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGGCACTGGTCTTGT	1429	False	NA	12	True	AATAAA	-17	NA	140714210	140734641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_140714388_140719442_140719538_140719648_140719832_140721106_140721166_140721258_140721374_140721622_140721703_140722636_140722715_140722868_140722939_140723612_140723748_140723834_140723902_140723978_140724111_140726438_140726595_140727653_140727765_140727853_140727901_140727995_140728185_140729194_140729402_140729767_140730095_140730209_140730331_140730461_140730587_140731196_140731358_140731492_140731598_140731678_140731759_140732312_140732466_140732576_140732674_140733353_140734160_140734251
transcript_66060.known	chr4	+	1073	9	FSM	ENSMUSG00000060572.18	ENSMUST00000071977.9	1073	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGCGTCCAGGGACAGC	NA	False	NA	NA	False	AATAAA	-25	NA	140737954	140743295	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_140738033_140740136_140740213_140741083_140741171_140741366_140741394_140741499_140741581_140741705_140741760_140742293_140742382_140742525_140742600_140742787
transcript_66064.known	chr4	-	1874	8	FSM	ENSMUSG00000028923.15	ENSMUST00000132906.8	1874	8	0	0	0	0	multi-exon	TRUE	canonical	1	6	junction_6	160.29029787182	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGATGGATATGTTTTT	8500	False	NA	-10	True	AATAAA	-22	NA	140805653	140793822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_140794924_140795505_140795591_140797366_140797545_140799839_140799949_140800818_140800901_140800985_140801074_140802270_140802372_140805523
transcript_66065.known	chr4	-	809	7	FSM	ENSMUSG00000028923.15	ENSMUST00000150330.8	809	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	223.383576437979	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGCCAGCAGTTGTTTCTG	8485	False	NA	NA	False	GGGGCT	-8	NA	140805668	140797392	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_140797545_140798891_140799007_140799839_140799949_140800818_140800901_140800985_140801091_140802270_140802372_140805523
transcript_66072.known	chr4	-	3202	4	FSM	ENSMUSG00000040842.18	ENSMUST00000148204.8	3202	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	172.554017307303	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGGCTTCCTGTCTCAT	NA	False	NA	0	True	AATACA	-31	NA	140867038	140840311	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_140843176_140845837_140846090_140847634_140847685_140867002
transcript_66074.known	chr4	-	3203	3	FSM	ENSMUSG00000040842.18	ENSMUST00000094549.11	3203	3	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_2	123	615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGGCTTCCTGTCTCAT	NA	False	NA	0	True	AATACA	-31	NA	140867086	140840311	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_140843176_140845837_140846093_140867002
transcript_66075.known	chr4	+	5934	10	FSM	ENSMUSG00000028920.10	ENSMUST00000030757.10	5934	10	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_2	13.4283650402542	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACTGTTTTATTAGTATA	NA	False	NA	15	True	AATAAA	-19	NA	140875223	140931373	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_140875491_140895023_140895289_140898134_140898252_140907708_140907844_140920975_140921130_140922491_140922603_140924793_140924891_140925352_140925410_140926240_140926358_140926759
transcript_66078.known	chr4	+	985	6	FSM	ENSMUSG00000073733.5	ENSMUST00000097813.3	985	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	1.26491106406735	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGGAGGGCTCTCACAT	NA	False	NA	NA	False	NA	NA	NA	140941266	140947459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_140941375_140941633_140941784_140944562_140944716_140945415_140945541_140945848_140945986_140947147
transcript_66081.nic	chr4	+	1028	5	ISM	ENSMUSG00000028919.12	ENSMUST00000006618.9	3414	17	8015	380	3958	-380	3prime_fragment	FALSE	canonical	3	59	junction_1	6.67083203206317	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTAGTTGCCAAGAAAGCAA	792	False	NA	7	True	ATTAAA	-18	NA	140978194	140984495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_140978416_140981600_140981760_140982011_140982092_140983614_140983720_140984032
transcript_66082.nic	chr4	+	1408	5	ISM	ENSMUSG00000028919.12	ENSMUST00000006618.9	3414	17	8015	0	3958	0	3prime_fragment	FALSE	canonical	3	59	junction_1	6.67083203206317	94	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATGTAGCATCTGCTTC	792	False	NA	14	True	TTTAAA	-18	NA	140978194	140984875	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_140978416_140981600_140981760_140982011_140982092_140983614_140983720_140984032
transcript_66083.known	chr4	+	564	2	FSM	ENSMUSG00000085395.2	ENSMUST00000142429.2	564	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAATTAGAAATCAGCAAA	656	False	NA	NA	False	NA	NA	NA	141005749	141007105	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_141005856_141006647
transcript_66084.known	chr4	+	3913	17	FSM	ENSMUSG00000006445.4	ENSMUST00000006614.3	3913	17	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_7	17.9965274428152	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGCTTTCATTCCTGGA	NA	False	NA	8	True	AATAAA	-22	NA	141028550	141056695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_141028746_141033824_141033893_141035715_141036392_141043897_141044054_141044181_141044515_141045792_141045909_141046233_141046388_141047804_141047905_141048527_141048584_141048775_141048902_141049012_141049202_141049373_141049436_141049513_141049724_141049896_141050047_141050723_141050918_141051542_141051699_141055723
transcript_66085.known	chr4	+	1433	7	FSM	ENSMUSG00000006218.5	ENSMUST00000006380.5	1433	7	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_5	7.90393713425292	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAACTTGACCTGGTCTTC	7186	False	NA	13	True	ATTAAA	-19	NA	141095530	141111486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_141095636_141106988_141107105_141107629_141107666_141107912_141108007_141109637_141109821_141110054_141110166_141110698
transcript_66086.nic	chr4	+	1233	5	ISM	ENSMUSG00000006218.5	ENSMUST00000006380.5	1433	7	12078	0	12078	0	3prime_fragment	FALSE	canonical	3	37	junction_3	8.98262211161084	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAACTTGACCTGGTCTTC	506	False	NA	13	True	ATTAAA	-19	NA	141107608	141111486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_141107666_141107912_141108007_141109637_141109821_141110054_141110166_141110698
transcript_66087.nic	chr4	-	1953	13	ISM	ENSMUSG00000033770.14	ENSMUST00000105790.8	2511	19	3413	0	36	0	3prime_fragment	FALSE	canonical	1	1	junction_10	15.3539263888934	118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGTTCACCCATCTTC	NA	False	NA	1	True	AATAAA	-20	NA	141122102	141111920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_141112260_141112587_141112675_141114383_141114468_141114599_141114689_141115444_141115579_141116627_141116842_141117387_141117499_141117652_141117723_141118656_141118831_141119083_141119169_141119835_141119938_141120051_141120137_141121723
transcript_66095.nnic	chr4	-	918	7	NNC	ENSMUSG00000006216.11	novel	2370	20	NA	NA	-2955	0	at_least_one_novel_splicesite	TRUE	canonical	3	12	junction_6	35.5387112878337	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGTGTCCCCTCTCCTCCC	4180	False	NA	-4	True	AATAAA	-18	NA	141135623	141131663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_141131944_141132063_141132151_141132362_141132447_141132582_141132672_141134399_141134534_141135114_141135329_141135593
transcript_66107.known	chr4	+	2769	3	FSM	ENSMUSG00000006221.8	ENSMUST00000102486.5	2769	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	1	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACTTGTGGAGACCCCAC	148	False	NA	NA	False	AATAAA	-13	NA	141148089	141152622	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_141149292_141149811_141149946_141151189
transcript_66109.known	chr4	-	905	2	FSM	ENSMUSG00000070637.3	ENSMUST00000094544.3	905	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGAAGGGAGTCTGACCTTG	NA	False	NA	NA	False	AATAAA	-29	NA	141163416	141159982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_141160768_141163296
transcript_66111.known	chr4	+	2722	16	FSM	ENSMUSG00000006215.13	ENSMUST00000006377.13	2722	16	0	0	0	0	multi-exon	TRUE	canonical	3	129	junction_3	19.5436832648187	331	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGCCTGTGGTCCCTGTG	NA	False	NA	5	True	AATAAA	-15	NA	141171964	141194536	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_141172114_141174561_141174649_141189079_141189287_141189845_141190035_141190577_141190719_141190983_141191107_141191547_141191790_141191870_141192014_141192099_141192401_141192659_141192748_141192834_141192952_141193032_141193154_141193287_141193419_141193658_141193869_141193984_141194075_141194153
transcript_66112.known	chr4	+	1701	3	FSM	ENSMUSG00000048406.6	ENSMUST00000049927.6	1701	3	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	0	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATTTGGTTAGTTGGTTT	NA	False	NA	NA	False	AGTAAA	-13	NA	141273499	141275203	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_141273876_141273876_141274069_141274070
transcript_66115.known	chr4	-	3101	9	FSM	ENSMUSG00000006219.13	ENSMUST00000006381.11	3101	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_8	521.665826343839	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	-4	True	AATAAA	-14	NA	141325535	141303372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141325393
transcript_66116.known	chr4	-	3036	9	FSM	ENSMUSG00000006219.13	ENSMUST00000105784.8	3036	9	0	0	0	0	multi-exon	FALSE	canonical	3	1168	junction_5	205.258944689385	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	-4	True	AATAAA	-14	NA	141327235	141303372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141327158
transcript_66133.known	chr4	-	536	4	FSM	ENSMUSG00000006219.13	ENSMUST00000147785.8	536	4	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_3	734.516167282926	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACTGCACCTGCCCCCAC	NA	False	NA	NA	False	NA	NA	NA	141327343	141317297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_141317437_141322534_141322791_141323205_141323260_141327256
transcript_66138.known	chr4	-	2898	6	FSM	ENSMUSG00000043085.15	ENSMUST00000143154.8	2898	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	37.2526509123847	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAGAATTAAAAATAAAAAG	NA	False	NA	NA	False	NA	NA	NA	141345944	141340686	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_141342018_141342255_141342422_141343514_141343933_141344605_141344781_141344950_141345024_141345209
transcript_66142.known	chr4	-	1671	6	FSM	ENSMUSG00000043085.15	ENSMUST00000053263.9	1671	6	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	22.4535075210979	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCGTTGAGGATCACAGT	NA	False	NA	-4	True	AATAAA	-16	NA	141345549	141341543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_141342018_141342255_141342447_141343514_141343933_141344605_141344781_141344950_141345024_141345209
transcript_66146.nnic	chr4	-	1051	5	NIC	ENSMUSG00000043085.15	novel	2898	6	NA	NA	-80	0	intron_retention	FALSE	canonical	1	1	junction_2	45.1573637405905	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCGTTGAGGATCACAGT	NA	False	NA	-4	True	AATAAA	-16	NA	141345372	141341543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_141342018_141342255_141342422_141344605_141344781_141344950_141345024_141345209
transcript_66158.known	chr4	-	2478	5	FSM	ENSMUSG00000043085.15	ENSMUST00000156246.2	2478	5	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_2	19.536824204563	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACCTGCGTTGAGGATCA	NA	False	NA	-8	True	AATAAA	-12	NA	141345292	141341547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_141342018_141342255_141343933_141344605_141344781_141344950_141345024_141345209
transcript_66161.known	chr4	-	2670	5	FSM	ENSMUSG00000040740.8	ENSMUST00000038661.8	2670	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGCAATTGCCCTCTGC	NA	False	NA	-4	True	AATAAA	-18	NA	141351132	141346134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_141347906_141348688_141348824_141349514_141349668_141349752_141349819_141350587
transcript_66164.known	chr4	+	1407	7	FSM	ENSMUSG00000040706.5	ENSMUST00000038161.5	1407	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	1.49071198499986	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGCCTGTGGAGTTCAG	NA	False	NA	NA	False	ATTAAA	-15	NA	141473982	141486574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_141474411_141476885_141477089_141482135_141482185_141483109_141483306_141484696_141484877_141485649_141485735_141486308
transcript_66166.known	chr4	-	5969	15	FSM	ENSMUSG00000040697.11	ENSMUST00000038014.11	5969	15	0	0	0	0	multi-exon	TRUE	canonical	3	44	junction_12	6.2974727681274	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGCTCTGGGGCACCTCT	NA	False	NA	-12	True	AATAAA	-15	NA	141518202	141487499	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_141491206_141491878_141492050_141493794_141493894_141493972_141494054_141495018_141495096_141495201_141495385_141497163_141497348_141498217_141498349_141501811_141501971_141502676_141502782_141504205_141504391_141510083_141510418_141511998_141512066_141516199_141516385_141517900
transcript_66171.known	chr4	+	3897	9	FSM	ENSMUSG00000028914.14	ENSMUST00000030747.11	3897	9	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_8	15.5060472074607	196	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTTGGCATTTTTCCGG	NA	False	NA	39	True	AATAAA	-21	NA	141520922	141543287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_141521298_141523745_141524146_141531131_141531167_141532672_141532850_141533140_141533231_141534425_141534574_141538849_141539030_141539517_141539628_141540905
transcript_66176.nnic	chr4	-	949	6	NNC	ENSMUSG00000058579.6	novel	1070	8	NA	NA	-3041	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_5	47.5663746779172	66	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGAATGAGTCTGTCTT	9869	False	NA	-2	True	AATAAA	-18	NA	141549554	141542272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_141542367_141545175_141545329_141546292_141546439_141548635_141548773_141549012_141549142_141549264
transcript_66177.nnic	chr4	-	632	4	NNC	ENSMUSG00000058579.6	novel	1070	8	NA	NA	-262	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	45.7019328548221	277	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGAATGAGTCTGTCTT	273	False	NA	-2	True	AATAAA	-18	NA	141546775	141542272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_141542367_141545175_141545329_141546292_141546439_141546536
transcript_66178.known	chr4	-	468	3	FSM	ENSMUSG00000058579.6	ENSMUST00000127962.2	468	3	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	12.5	535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGAATGAGTCTGTCTT	535	False	NA	-2	True	AATAAA	-18	NA	141546513	141542272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_141542367_141545175_141545329_141546292
transcript_6618.known	chr10	-	365	2	FSM	ENSMUSG00000069682.7	ENSMUST00000217340.2	365	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGGAAAAAAAAAATCAATAG	NA	False	NA	-10	True	AATAAA	-19	NA	29575277	29574743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_29575071_29575239
transcript_66180.nnic	chr4	-	1306	9	NNC	ENSMUSG00000051435.12	novel	1366	8	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_8	3.62068708949006	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAGTGTTTCATTGCTTC	3689	False	NA	NA	False	AGTAAA	-29	NA	141660427	141643599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_141643864_141645584_141645692_141646058_141646144_141648047_141648274_141649554_141649729_141655690_141655796_141656840_141656949_141660103_141660212_141660298
transcript_66181.known	chr4	-	1366	8	FSM	ENSMUSG00000051435.12	ENSMUST00000036701.8	1366	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	3.33197251134017	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAGTGTTTCATTGCTTC	3716	False	NA	NA	False	AGTAAA	-29	NA	141660400	141643599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_141643864_141645584_141645692_141646058_141646144_141648047_141648274_141649554_141649729_141655690_141655796_141656840_141656949_141660103
transcript_66186.known	chr4	+	630	2	FSM	ENSMUSG00000085761.2	ENSMUST00000126231.2	630	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGCTTTGTAAAGTTCTG	NA	False	NA	NA	False	CATAAA	-12	NA	141745208	141756307	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_141745442_141755910
transcript_6619.known	chr10	-	635	1	FSM	ENSMUSG00000069682.7	ENSMUST00000092620.6	635	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	291382	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAAAAAATCAATAGAC	NA	False	NA	-8	True	AATAAA	-21	NA	29575376	29574741	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_29574700_29575400
transcript_66191.known	chr4	+	675	4	FSM	ENSMUSG00000073728.11	ENSMUST00000139653.2	675	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0.942809041582063	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCCAACCCCCAAAACCTCA	NA	False	NA	NA	False	NA	NA	NA	141812166	141815388	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_141812286_141812991_141813043_141813690_141813870_141815062
transcript_66195.nnic	chr4	-	2121	3	NNC	ENSMUSG00000040616.4	novel	1875	3	NA	NA	-669	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	75.5	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTGACCTCATTCAGTCA	10019	False	NA	-6	True	AATAAA	-18	NA	141812284	141758302	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_141759406_141764715_141765245_141811795
transcript_66196.known	chr4	-	1875	3	FSM	ENSMUSG00000040616.4	ENSMUST00000036572.4	1875	3	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_2	4	856	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTGACCTCATTCAGTCA	9800	False	NA	-6	True	AATAAA	-18	NA	141811615	141758302	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_141759406_141764715_141765245_141811372
transcript_6620.known	chr10	-	495	1	FSM	ENSMUSG00000069682.7	ENSMUST00000168697.4	495	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	148	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAGAAGCAACAAGAAAATA	NA	False	NA	-58	True	NA	NA	NA	29575286	29574791	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_29574800_29575300
transcript_66206.nnic	chr4	-	588	3	NIC	ENSMUSG00000057637.14	novel	7304	10	NA	NA	32576	-1655	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	7	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTTCGTGCTTCTTGAG	NA	False	NA	-5	True	TTTAAA	-14	NA	142888729	142835615	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_142835956_142838203_142838348_142888625
transcript_66209.known	chr4	-	1817	6	FSM	ENSMUSG00000028583.15	ENSMUST00000030317.14	1817	6	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_2	58.6153563496802	1084	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGCCAACATTTGACACT	NA	False	NA	-23	True	AATAAA	-20	NA	143026134	142994000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_142994997_142995757_142995870_142997092_142997132_143000469_143000627_143002640_143002778_143025758
transcript_66210.known	chr4	-	762	5	FSM	ENSMUSG00000028583.15	ENSMUST00000119654.2	762	5	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_2	239.080530365816	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTTCCTGTGGAGGAAGA	NA	False	NA	NA	False	NA	NA	NA	143026033	142994915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_142994997_142995757_142995870_143000469_143000627_143002640_143002778_143025758
transcript_66212.known	chr4	+	3886	5	FSM	ENSMUSG00000046862.15	ENSMUST00000059790.11	3886	5	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_2	51.5866988670529	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTTTCACTTCCTTTG	NA	False	NA	10	True	AATAAA	-17	NA	143138995	143147661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_143139662_143141918_143141984_143143209_143143523_143143942_143144531_143145407
transcript_66213.known	chr4	+	3260	4	FSM	ENSMUSG00000046862.15	ENSMUST00000037356.8	3260	4	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	39.6316371938716	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTTTCACTTCCTTTG	NA	False	NA	10	True	AATAAA	-17	NA	143139556	143147661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_143139662_143143209_143143523_143143942_143144531_143145407
transcript_66214.known	chr4	+	2106	4	FSM	ENSMUSG00000046435.8	ENSMUST00000078695.5	2106	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATATGTTTTTGTTTTGTTT	NA	False	NA	NA	False	AATAAA	-16	NA	143446024	143455728	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_143446101_143452565_143452858_143453180_143453769_143454578
transcript_66216.nnic	chr4	+	2662	4	NNC	ENSMUSG00000078508.2	novel	1745	3	NA	NA	-3298	784	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	5.90668171555645	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTGAGTATTTTTTTTC	NA	False	NA	NA	False	AATGAA	-13	NA	144053520	144060819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_144053628_144056792_144057106_144057681_144058255_144059150
transcript_66217.known	chr4	+	1745	3	FSM	ENSMUSG00000078508.2	ENSMUST00000105751.2	1745	3	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAGGCAATGGTGGCACAC	NA	False	NA	NA	False	NA	NA	NA	144056818	144060035	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_144057106_144057681_144058255_144059150
transcript_66218.known	chr4	+	2094	4	FSM	ENSMUSG00000070619.6	ENSMUST00000094526.5	2094	4	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_3	3.09120616516523	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATACCACACCTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	144084511	144090989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_144084551_144088178_144088493_144088970_144089562_144089839
transcript_66223.nic	chr4	-	2573	5	NIC	ENSMUSG00000028591.12	novel	2460	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_4	43.6369969177532	935	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTGTTGGTTTTGCTT	NA	False	NA	-4	True	AATAAA	-15	NA	144135034	144118243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_144119688_144121144_144121730_144122249_144122573_144129907_144130021_144134926
transcript_66224.nic	chr4	-	2648	4	NIC	ENSMUSG00000028591.12	novel	2460	4	NA	NA	4784	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	38.7843038125248	931	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTGTTGGTTTTGCTT	NA	False	NA	-4	True	AATAAA	-15	NA	144130203	144118243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_144119688_144121144_144121730_144122249_144122573_144129907
transcript_66225.known	chr4	-	2460	4	FSM	ENSMUSG00000028591.12	ENSMUST00000030326.10	2460	4	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_3	9.80929264637478	1096	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTGTTGGTTTTGCTT	NA	False	NA	-4	True	AATAAA	-15	NA	144135034	144118243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_144119688_144121144_144121730_144122249_144122573_144134926
transcript_66227.known	chr4	+	1349	7	FSM	ENSMUSG00000066026.15	ENSMUST00000171001.8	1349	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	68.47627326308	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCGTTCACGTGTTTGG	5696	False	NA	12	True	AATAAA	-19	NA	144619396	144654215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_144619481_144620154_144620280_144645220_144645365_144645954_144646075_144646410_144646650_144650475_144650602_144653704
transcript_66230.known	chr4	-	3818	10	FSM	ENSMUSG00000028599.11	ENSMUST00000030336.11	3818	10	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_7	11.2546286774228	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGCTTATCTGTTTGTT	7832	False	NA	NA	False	AATAAA	-38	NA	144973440	144940032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_144942671_144946298_144946507_144949523_144949559_144950072_144950151_144950821_144951055_144951381_144951476_144951899_144952053_144954037_144954167_144955573_144955677_144973293
transcript_6626.known	chr10	-	1532	3	FSM	ENSMUSG00000075266.6	ENSMUST00000099985.6	1532	3	0	0	0	0	multi-exon	FALSE	canonical	3	2101	junction_1	71	6482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAGAGTGATTGTACTACA	NA	False	NA	NA	False	NA	NA	NA	30076556	30072004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_30073223_30074461_30074576_30076356
transcript_6627.known	chr10	-	4143	2	FSM	ENSMUSG00000075266.6	ENSMUST00000216853.2	4143	2	0	0	0	0	multi-exon	FALSE	canonical	3	2243	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCAGACTTGACTTGAA	NA	False	NA	NA	False	NA	NA	NA	30076488	30070564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_30074576_30076356
transcript_66274.nnic	chr4	+	3525	5	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-36470	1677	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	44.4578452019438	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGAAATTGTTCAACTTG	NA	False	NA	23	True	NA	NA	NA	145136839	145179135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_145136997_145138756_145138851_145173287_145173342_145174456_145174578_145176036
transcript_6630.known	chr10	-	2359	13	FSM	ENSMUSG00000019792.9	ENSMUST00000019927.7	2359	13	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_10	17.7080882335979	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGCCTATTTGATTTGTGG	NA	False	NA	NA	False	AGTAAA	-21	NA	30476745	30410220	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_30411241_30423652_30423774_30434914_30435047_30435159_30435233_30436813_30436979_30442421_30442503_30463434_30463592_30466020_30466156_30466838_30466932_30467016_30467099_30470110_30470185_30473735_30473802_30476585
transcript_66333.nnic	chr4	+	504	4	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14362	-1186	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	39.6007856263259	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAGTGGATGTGACAAATG	NA	False	NA	13	True	NA	NA	NA	145158947	145176272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_145159032_145173065_145173196_145173287_145173342_145176036
transcript_66374.known	chr4	+	375	3	FSM	ENSMUSG00000085101.8	ENSMUST00000143127.8	375	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	48	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGTCACCTTCCAGGTCA	NA	False	NA	NA	False	NA	NA	NA	145136814	145159135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_145136997_145138756_145138851_145159036
transcript_66376.known	chr4	+	545	3	FSM	ENSMUSG00000085101.8	ENSMUST00000150529.2	545	3	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_2	10.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAATTCATACAGGAGAGAA	NA	False	NA	67	True	NA	NA	NA	145136835	145176326	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_145136997_145138756_145138851_145176036
transcript_66393.nnic	chr4	+	2190	3	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14353	777	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	16.5	74	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	21	True	NA	NA	NA	145158956	145178235	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_145159032_145176036_145176243_145176326
transcript_66402.nnic	chr4	+	647	3	Fusion	ENSMUSG00000085101.8_ENSMUSG00000082082.2	novel	375	3	NA	NA	-14350	2914	multi-exon	FALSE	canonical	2	8	junction_2	25.5	20	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGACTTATCCTGATTTTT	NA	False	NA	21	True	ATTAAA	-17	NA	145158959	145180372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_145159152_145176036_145176136_145180016
transcript_66404.nnic	chr4	+	2215	3	Fusion	ENSMUSG00000085101.8_ENSMUSG00000082082.2	novel	375	3	NA	NA	-14350	768	multi-exon	FALSE	non_canonical	0	0	junction_2	29.5	71	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTACAAGTTTGCTTTGG	NA	False	NA	12	True	NA	NA	NA	145158959	145178226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_145159152_145176036_145176318_145176484
transcript_66405.nnic	chr4	+	2214	3	Fusion	ENSMUSG00000085101.8_ENSMUSG00000082082.2	novel	375	3	NA	NA	-14350	768	multi-exon	TRUE	non_canonical	0	0	junction_2	29.5	60	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTACAAGTTTGCTTTGG	NA	False	NA	12	True	NA	NA	NA	145158959	145178226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_145159152_145176036_145176327_145176494
transcript_66415.nnic	chr4	+	2445	3	Fusion	ENSMUSG00000085101.8_ENSMUSG00000082082.2	novel	375	3	NA	NA	-14335	777	multi-exon	FALSE	canonical	3	28	junction_1	34.5	132	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	21	True	NA	NA	NA	145158974	145178235	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_145159152_145160315_145160385_145176036
transcript_66422.nnic	chr4	+	2274	2	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14353	777	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_1	0	84	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	21	True	NA	NA	NA	145158956	145178235	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_145159032_145176036
transcript_66423.nnic	chr4	+	2382	2	Fusion	ENSMUSG00000085101.8_ENSMUSG00000082082.2	novel	375	3	NA	NA	-14350	768	multi-exon	FALSE	canonical	3	59	junction_1	0	182	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTACAAGTTTGCTTTGG	NA	False	NA	12	True	NA	NA	NA	145158959	145178226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_145159152_145176036
transcript_66425.known	chr4	+	1575	3	FSM	ENSMUSG00000082082.2	ENSMUST00000120870.2	1575	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTCAAATATATTGAAGG	NA	False	NA	NA	False	AAGAAA	-1	NA	145173309	145177458	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_145173342_145174456_145174578_145176036
transcript_66432.nic	chr4	+	3108	5	NIC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_2	211.475028076603	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTGATTGTTTCCAAT	862	False	NA	NA	False	NA	NA	NA	145237296	145265758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_145237496_145247375_145247456_145257381_145257486_145261385_145261513_145263160
transcript_66440.known	chr4	+	3044	5	FSM	ENSMUSG00000078503.10	ENSMUST00000105741.2	3044	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	215.70972972956	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTGATTGTTTCCAAT	5019	False	NA	NA	False	NA	NA	NA	145241453	145265758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_145241589_145247375_145247456_145257381_145257486_145261385_145261513_145263160
transcript_66447.nnic	chr4	+	399	4	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	-5	54915	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	17.4610678049451	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTGTTGGTTTTTGTTTT	889	False	NA	NA	False	NA	NA	NA	145237323	145320673	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_145237496_145314001_145314095_145319501_145319572_145320609
transcript_66450.nnic	chr4	+	424	4	NNC	ENSMUSG00000078503.10	novel	3044	5	NA	NA	-62	54915	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	19.7540431867054	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTGTTGGTTTTTGTTTT	4957	False	NA	NA	False	NA	NA	NA	145241391	145320673	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_145241589_145314001_145314095_145319501_145319572_145320609
transcript_66451.nnic	chr4	+	655	4	NIC	ENSMUSG00000078503.10	novel	3044	5	NA	NA	-37	1923	combination_of_known_splicesites	FALSE	canonical	3	25	junction_1	226.592634969061	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTTGTTTTCTACCATT	4982	False	NA	27	True	AATACA	-19	NA	145241416	145263412	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_145241589_145257381_145257486_145261385_145261513_145263160
transcript_66460.known	chr4	+	262	2	FSM	ENSMUSG00000078503.10	ENSMUST00000128939.2	262	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATACAAAAAAAGAAAAAAGA	912	False	NA	NA	False	NA	NA	NA	145237346	145238406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_145237496_145238293
transcript_66461.known	chr4	+	2996	4	FSM	ENSMUSG00000078503.10	ENSMUST00000105742.8	2996	4	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_2	195.188797492752	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTGATTGTTTCCAAT	894	False	NA	NA	False	NA	NA	NA	145237328	145265758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_145237496_145257381_145257486_145261385_145261513_145263160
transcript_66469.nnic	chr4	+	1594	3	Fusion	ENSMUSG00000082352.2_ENSMUSG00000078503.10	novel	3044	5	NA	NA	-47	767	multi-exon	FALSE	non_canonical	0	0	junction_2	2	22	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTAGTATTGTTGTCCT	4972	False	NA	NA	False	AGTAAA	-10	NA	145241406	145302498	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_145241589_145301002_145301752_145301835
transcript_66474.nnic	chr4	+	1005	2	Fusion	ENSMUSG00000082352.2_ENSMUSG00000078503.10	novel	3044	5	NA	NA	-47	94	multi-exon	FALSE	canonical	1	4	junction_1	0	851	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTAAGATTTGTTTTT	4972	False	NA	20	True	AAGAAA	-16	NA	145241406	145301825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_145241589_145301002
transcript_66475.nnic	chr4	+	1678	2	Fusion	ENSMUSG00000082352.2_ENSMUSG00000078503.10	novel	3044	5	NA	NA	-47	767	multi-exon	FALSE	canonical	1	4	junction_1	0	129	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTAGTATTGTTGTCCT	4972	False	NA	NA	False	AGTAAA	-10	NA	145241406	145302498	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_145241589_145301002
transcript_66478.known	chr4	-	404	1	FSM	ENSMUSG00000083454.2	ENSMUST00000117838.2	404	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	374	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCACACACCCCTGAAGCAA	NA	False	NA	NA	False	NA	NA	NA	145303862	145303458	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_145303500_145303900
transcript_6652.nic	chr10	-	1758	12	NIC	ENSMUSG00000019792.9	novel	2359	13	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	52.8487628572059	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGTGATACTCAGTATTT	NA	False	NA	-2	True	AATAAA	-23	NA	30476716	30410710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_-_30411241_30423652_30423774_30434914_30435047_30435159_30435233_30436813_30436979_30442421_30442503_30463434_30463592_30466020_30466156_30466838_30466932_30470110_30470185_30473735_30473802_30476585
transcript_6658.known	chr10	-	1576	11	FSM	ENSMUSG00000019792.9	ENSMUST00000215595.2	1576	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_8	70.5592658691968	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGTGATACTCAGTATTT	NA	False	NA	-2	True	AATAAA	-23	NA	30476691	30410710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_30411241_30423652_30423774_30434914_30435047_30435159_30435233_30436813_30436979_30442421_30442503_30466020_30466156_30466838_30466932_30470110_30470185_30473735_30473802_30476585
transcript_66586.nnic	chr4	+	757	6	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-55	0	multi-exon	FALSE	non_canonical	0	0	junction_1	21.8942914934464	17	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	839	False	NA	NA	False	NA	NA	NA	145237273	145351915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_145237496_145239546_145239640_145343640_145343746_145347127_145347255_145348721_145348838_145351821
transcript_66590.nnic	chr4	+	710	6	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-55	0	multi-exon	FALSE	non_canonical	0	0	junction_1	21.8942914934464	32	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	839	False	NA	NA	False	NA	NA	NA	145237273	145351915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_145237496_145239546_145239640_145343687_145343746_145347127_145347255_145348721_145348838_145351821
transcript_66616.nnic	chr4	+	729	5	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-55	-835	multi-exon	FALSE	non_canonical	0	0	junction_1	22.5111083689809	19	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTGTAA	839	False	NA	NA	False	AATACA	-2	NA	145237273	145348950	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_145237496_145239546_145239640_145343687_145343746_145347127_145347255_145348721
transcript_66640.nnic	chr4	+	865	4	NNC	ENSMUSG00000078502.11	novel	3595	4	NA	NA	-7	36461	at_least_one_novel_splicesite	TRUE	canonical	3	12	junction_3	44.5446093508768	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAACTTAAAAAGGTCTTT	NA	False	NA	NA	False	NA	NA	NA	145311728	145388376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_145312083_145314001_145314095_145319501_145319572_145388028
transcript_66645.nnic	chr4	+	315	3	NNC	ENSMUSG00000078502.11	novel	3595	4	NA	NA	-11	164172	at_least_one_novel_splicesite	FALSE	canonical	3	91	junction_1	76.5	73	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAAAAAAGAATGAGTT	NA	False	NA	NA	False	NA	NA	NA	145311724	145516087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_145311905_145510590_145510684_145516045
transcript_66646.nnic	chr4	+	488	3	NNC	ENSMUSG00000078502.11	novel	3595	4	NA	NA	-7	-30243	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_2	36	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGAGTTCTCTGGTAAAC	NA	False	NA	NA	False	AAAAAG	-6	NA	145311728	145319542	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_145312083_145314001_145314095_145319501
transcript_66650.nnic	chr4	+	273	2	NNC	ENSMUSG00000078502.11	novel	3595	4	NA	NA	-11	158768	at_least_one_novel_splicesite	FALSE	canonical	3	91	junction_1	0	85	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGTTAGAGGTATTGAAC	NA	False	NA	NA	False	NA	NA	NA	145311724	145510683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_145311905_145510590
transcript_66651.nnic	chr4	+	438	2	NNC	ENSMUSG00000078502.11	novel	3595	4	NA	NA	2	158768	at_least_one_novel_splicesite	FALSE	canonical	3	88	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGTTAGAGGTATTGAAC	NA	False	NA	NA	False	NA	NA	NA	145311737	145510683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_145312083_145510590
transcript_66652.known	chr4	+	3595	4	FSM	ENSMUSG00000078502.11	ENSMUST00000105739.8	3595	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	21.2289111041209	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145311735	145351915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_145311905_145343640_145343746_145347127_145347255_145348721
transcript_66664.nnic	chr4	+	1506	9	Fusion	ENSMUSG00000058186.14_ENSMUSG00000078502.11	novel	1938	3	NA	NA	-11	3476	multi-exon	FALSE	canonical	0	0	junction_8	171.268612127266	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	145311724	145434487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_145312083_145314001_145314095_145319501_145319572_145399301_145399395_145406465_145406546_145422720_145422806_145425813_145425941_145427474_145427580_145433992
transcript_66672.nnic	chr4	+	1401	8	Fusion	ENSMUSG00000058186.14_ENSMUSG00000078502.11	novel	1938	3	NA	NA	-11	3476	multi-exon	FALSE	canonical	0	0	junction_7	152.773274722341	82	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	145311724	145434487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_145312083_145314001_145314095_145319501_145319572_145399301_145399395_145406465_145406546_145422720_145422806_145425813_145425941_145433992
transcript_6669.known	chr10	-	1585	2	FSM	ENSMUSG00000019792.9	ENSMUST00000216638.2	1585	2	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAGAAAGGAAAAACATC	NA	False	NA	NA	False	NA	NA	NA	30476691	30472322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_30473802_30476585
transcript_6670.known	chr10	-	1445	7	FSM	ENSMUSG00000039697.17	ENSMUST00000215725.2	1445	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	1.21335164821342	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAACACGGTGTCTTGTG	NA	False	NA	NA	False	ATTAAA	-1	NA	30679322	30571886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_30572190_30574125_30574240_30577914_30578023_30580596_30580677_30598641_30598863_30647715_30647837_30678824
transcript_66700.nnic	chr4	+	1251	6	Fusion	ENSMUSG00000058186.14_ENSMUSG00000078502.11	novel	1938	3	NA	NA	-11	3476	multi-exon	FALSE	canonical	0	0	junction_2	176.343528375725	21	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	145311724	145434487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_145312083_145314001_145314095_145399301_145399395_145422720_145422806_145425813_145425941_145433992
transcript_66711.nnic	chr4	+	747	5	Fusion	ENSMUSG00000058186.14_ENSMUSG00000078502.11	novel	1938	3	NA	NA	-11	-1474	multi-exon	TRUE	canonical	0	0	junction_1	208.631703007956	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTCTTCTATCATTAGTC	NA	False	NA	NA	False	TATAAA	-21	NA	145311724	145427736	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_145311905_145399301_145399395_145422720_145422806_145425813_145425941_145427474
transcript_66712.nnic	chr4	+	846	5	Fusion	ENSMUSG00000058186.14_ENSMUSG00000078502.11	novel	1938	3	NA	NA	-11	-1375	multi-exon	FALSE	canonical	0	0	junction_1	208.631703007956	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATAGTGAAATGAGCACTT	NA	False	NA	NA	False	AATAAA	-33	NA	145311724	145427835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_145311905_145399301_145399395_145422720_145422806_145425813_145425941_145427474
transcript_66714.known	chr4	+	4006	5	FSM	ENSMUSG00000058186.14	ENSMUST00000105738.9	4006	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	173.168992605489	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	NA	False	NA	NA	False	AATAAA	-19	NA	145397254	145431011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_145397419_145399301_145399395_145422720_145422806_145425813_145425941_145427474
transcript_66731.nnic	chr4	+	2646	3	NNC	ENSMUSG00000058186.14	novel	1938	3	NA	NA	5217	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	NA	False	NA	NA	False	AATAAA	-22	NA	145427947	145431014	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_145428486_145428822_145429340_145429423
transcript_66736.nnic	chr4	+	381	2	NNC	ENSMUSG00000058186.14	novel	4006	5	NA	NA	-45	-31038	at_least_one_novel_splicesite	FALSE	canonical	2	23	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGAAAAGAAAGAAGACC	NA	False	NA	NA	False	NA	NA	NA	145397209	145398172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_145397419_145398000
transcript_66738.nnic	chr4	+	396	3	Genic_Genomic	ENSMUSG00000094417.2	novel	565	1	NA	NA	-175	14248	multi-exon	FALSE	canonical	3	220	junction_1	12	299	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCTTCTCTGGTAAAA	NA	False	NA	NA	False	NA	NA	NA	145501113	145516101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr4_+_145501361_145510590_145510684_145516045
transcript_66739.nnic	chr4	+	340	2	Genic_Genomic	ENSMUSG00000094417.2	novel	565	1	NA	NA	-175	8830	multi-exon	FALSE	canonical	3	220	junction_1	0	114	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGTTAGAGGTATTGAAC	NA	False	NA	NA	False	NA	NA	NA	145501113	145510683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr4_+_145501361_145510590
transcript_6675.known	chr10	-	616	6	FSM	ENSMUSG00000019791.13	ENSMUST00000160646.3	616	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	102.733830844566	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGGTTTGTTCTCTTTG	NA	False	NA	2	True	AATAAA	-42	NA	30494329	30484344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_30484420_30486312_30486440_30487643_30487714_30489273_30489369_30490708_30490827_30494198
transcript_6676.known	chr10	-	687	6	FSM	ENSMUSG00000019791.13	ENSMUST00000216617.2	687	6	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_5	98.2148664917893	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTACGTGAAAATTTTCTC	NA	False	NA	NA	False	NA	NA	NA	30505628	30484226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_30484420_30486312_30486440_30487643_30487714_30490708_30490827_30505319_30505398_30505527
transcript_6680.known	chr10	-	509	5	FSM	ENSMUSG00000019791.13	ENSMUST00000019925.7	509	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	90.3562394082445	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATGGACAAGTTCCTTAC	NA	False	NA	-32	True	AATAAA	-8	NA	30494333	30484378	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_30484420_30486312_30486458_30487643_30487714_30490708_30490827_30494198
transcript_66806.known	chr4	+	2413	3	FSM	ENSMUSG00000084350.2	ENSMUST00000122051.2	2413	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	36.5	126	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAATTCAAATGAGCCAAT	NA	False	NA	NA	False	AATAAA	-20	NA	145551806	145556512	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_145551837_145552678_145552806_145554256
transcript_66814.nnic	chr4	+	771	7	NNC	ENSMUSG00000078500.4	novel	1427	4	NA	NA	-87331	-782	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_4	100.188156319331	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTTGTTTTCTACCATT	NA	False	NA	NA	False	AATACA	-19	NA	145508032	145625750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_145508131_145510590_145510684_145541336_145541383_145598857_145598909_145618982_145619087_145623213_145623341_145625498
transcript_66830.nnic	chr4	+	720	6	NNC	ENSMUSG00000078500.4	novel	1427	4	NA	NA	-87331	-782	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	97.5807358037436	32	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTTGTTTTCTACCATT	NA	False	NA	NA	False	AATACA	-19	NA	145508032	145625750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_145508131_145510590_145510684_145541336_145541383_145618982_145619087_145623213_145623341_145625498
transcript_66841.nnic	chr4	+	674	5	NNC	ENSMUSG00000078500.4	novel	1427	4	NA	NA	-87331	-782	at_least_one_novel_splicesite	FALSE	canonical	2	18	junction_2	76.2577864876761	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTTGTTTTCTACCATT	NA	False	NA	NA	False	AATACA	-19	NA	145508032	145625750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_145508131_145510590_145510684_145618982_145619087_145623213_145623341_145625498
transcript_66845.nnic	chr4	+	786	5	NNC	ENSMUSG00000078500.4	novel	1427	4	NA	NA	-4762	-782	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	86.3495801958527	25	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTTGTTTTCTACCATT	5401	False	NA	NA	False	AATACA	-19	NA	145590601	145625750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_145590812_145593464_145593558_145618982_145619087_145623213_145623341_145625498
transcript_66883.nnic	chr4	+	813	6	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	-55	20629	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	31.2	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTGCATAGATCATGAGAG	NA	False	NA	NA	False	NA	NA	NA	146033812	146083820	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_146034017_146038221_146038353_146054421_146054480_146058453_146058581_146059414_146059520_146083632
transcript_66888.nnic	chr4	+	2736	5	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	-56	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	82.8322853723112	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033811	146063194	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_146034017_146054375_146054480_146058453_146058581_146060726_146061347_146061514
transcript_66889.nnic	chr4	+	2735	5	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	-56	3	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	82.8322853723112	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033811	146063194	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_146034017_146054375_146054480_146058453_146058581_146060726_146061381_146061549
transcript_66899.known	chr4	+	2798	4	FSM	ENSMUSG00000066009.9	ENSMUST00000091878.6	2798	4	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_2	56.5115524079418	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTGCTTTGGTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	146033914	146063191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_146034017_146054375_146054480_146058453_146058581_146060726
transcript_66903.nnic	chr4	+	2609	4	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	-56	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	70.528166162337	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033811	146063194	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_146034017_146054375_146054480_146060726_146061347_146061514
transcript_66904.nnic	chr4	+	2608	4	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	-56	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	70.528166162337	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033811	146063194	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_146034017_146054375_146054480_146060726_146061381_146061549
transcript_6691.known	chr10	+	858	6	FSM	ENSMUSG00000000295.14	ENSMUST00000000304.14	858	6	0	0	0	0	multi-exon	FALSE	canonical	3	475	junction_4	15.6025638918737	2341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCTGTCTTCTGTTTTGC	NA	False	NA	20	True	ATTAAA	-27	NA	31189378	31204200	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_31189480_31190510_31190633_31192288_31192392_31196263_31196333_31202017_31202157_31203876
transcript_66910.nnic	chr4	+	1603	3	NNC	ENSMUSG00000066009.9	novel	410	4	NA	NA	-56	-1160	at_least_one_novel_splicesite	TRUE	canonical	3	15	junction_2	78.5	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGTTGCTTAAATTTGC	NA	False	NA	NA	False	AATAAA	-23	NA	146033811	146057387	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_146034017_146054375_146054480_146056093
transcript_66911.nnic	chr4	+	2777	3	NIC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	-56	3	combination_of_known_splicesites	FALSE	canonical	3	72	junction_2	50	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033811	146063194	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_146034017_146054375_146054480_146060726
transcript_66912.nnic	chr4	+	2777	3	NNC	ENSMUSG00000066009.9	novel	410	4	NA	NA	4233	3	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_1	19.5	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146038147	146063194	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_146038353_146054375_146054480_146060726
transcript_66914.known	chr4	+	266	2	FSM	ENSMUSG00000066009.9	ENSMUST00000154939.2	266	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	146033867	146035167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_146034017_146035050
transcript_6692.known	chr10	+	819	7	FSM	ENSMUSG00000000295.14	ENSMUST00000159194.3	819	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	236.595764027075	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGCTGTTAAACACTCCA	NA	False	NA	0	True	ATTAAA	-7	NA	31189467	31204180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_31189480_31190510_31190633_31192288_31192392_31196263_31196333_31201201_31201272_31202017_31202157_31203876
transcript_66935.nnic	chr4	+	822	6	NNC	ENSMUSG00000066007.16	novel	724	2	NA	NA	-55219	58	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	187.318552204527	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTCTTCTATCATTAGTC	NA	False	NA	NA	False	TATAAA	-21	NA	146038174	146131797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_146038353_146094927_146095022_146102109_146102186_146126781_146126867_146129876_146130004_146131535
transcript_66946.nnic	chr4	+	1485	6	NNC	ENSMUSG00000066007.16	novel	4244	5	NA	NA	-56	21276	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	208.375622374595	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTCTAATTTATATCTT	NA	False	NA	NA	False	AGTAAA	-13	NA	146093337	146156601	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_146093548_146094927_146095022_146126781_146126867_146129876_146130004_146155470_146155591_146155752
transcript_66948.nnic	chr4	+	770	5	Fusion	ENSMUSG00000066007.16_ENSMUSG00000066009.9	novel	410	4	NA	NA	-53	58	multi-exon	FALSE	canonical	1	2	junction_1	215.861645504707	67	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTCTTCTATCATTAGTC	NA	False	NA	NA	False	TATAAA	-21	NA	146033814	146131797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_146034017_146094927_146095022_146126781_146126867_146129876_146130004_146131535
transcript_66950.nnic	chr4	+	4298	5	Fusion	ENSMUSG00000066007.16_ENSMUSG00000066009.9	novel	410	4	NA	NA	-53	0	multi-exon	FALSE	canonical	1	2	junction_1	215.861645504707	736	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	NA	False	NA	NA	False	AATAAA	-19	NA	146033814	146135325	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_146034017_146094927_146095022_146126781_146126867_146129876_146130004_146131535
transcript_66952.nnic	chr4	+	746	5	NNC	ENSMUSG00000066007.16	novel	724	2	NA	NA	-55219	58	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	214.304106353565	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTCTTCTATCATTAGTC	NA	False	NA	NA	False	TATAAA	-21	NA	146038174	146131797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_146038353_146094927_146095022_146126781_146126867_146129876_146130004_146131535
transcript_66957.known	chr4	+	4244	5	FSM	ENSMUSG00000066007.16	ENSMUST00000168483.9	4244	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	207.21064161862	773	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	NA	False	NA	NA	False	AATAAA	-13	NA	146093393	146135319	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_146093548_146094927_146095022_146126781_146126867_146129876_146130004_146131535
transcript_66966.nnic	chr4	+	272	3	Fusion	ENSMUSG00000066007.16_ENSMUSG00000085525.8	novel	724	2	NA	NA	17	16	multi-exon	FALSE	canonical	0	0	junction_1	126.5	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAAAAAAGAATGAGTT	NA	False	NA	-7	True	NA	NA	NA	146093410	146214964	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_146093548_146209452_146209546_146214922
transcript_66991.nnic	chr4	+	926	6	NNC	ENSMUSG00000085525.8	novel	314	3	NA	NA	-45	38389	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	84.2368090563739	122	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146206855	146253393	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_146207223_146209452_146209546_146240246_146240293_146250678_146250737_146251579_146251707_146253158
transcript_67.known	ERCC-00143	+	767	1	FSM	ERCC-00143A	DQ668362	767	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	767	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00143_+_0_800
transcript_6700.known	chr10	-	1103	5	FSM	ENSMUSG00000000296.9	ENSMUST00000214644.2	1103	5	0	0	0	0	multi-exon	FALSE	canonical	3	404	junction_1	42.7346463656832	902	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCTGGATCTTTTATTT	NA	False	NA	-4	True	ATTAAA	-16	NA	31321850	31208372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_31208966_31222606_31222709_31233867_31234017_31255210_31255327_31321707
transcript_6701.known	chr10	-	827	6	FSM	ENSMUSG00000000296.9	ENSMUST00000213639.2	827	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	219.239230066154	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAAATAGACAACCTGG	NA	False	NA	25	True	NA	NA	NA	31321793	31208652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_31208966_31214180_31214242_31222606_31222709_31233867_31234017_31255210_31255327_31321707
transcript_6702.known	chr10	-	351	1	FSM	ENSMUSG00000110960.2	ENSMUST00000214434.2	351	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTAGGTGCAGGCCATAG	NA	False	NA	NA	False	AATAAA	-5	NA	31290161	31289810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_31289800_31290200
transcript_67036.nnic	chr4	+	514	3	NNC	ENSMUSG00000085525.8	novel	280	2	NA	NA	-6967	0	at_least_one_novel_splicesite	FALSE	canonical	3	141	junction_1	56	387	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGTGCTGTTCACATT	NA	False	NA	33	True	NA	NA	NA	146199933	146215004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_146200273_146209452_146209546_146214922
transcript_67039.nnic	chr4	+	904	3	NNC	ENSMUSG00000085525.8	novel	326	3	NA	NA	-363	0	at_least_one_novel_splicesite	FALSE	canonical	3	147	junction_1	53	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGTGCTGTTCACATT	NA	False	NA	33	True	NA	NA	NA	146206537	146215004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_146207267_146209452_146209546_146214922
transcript_67041.nnic	chr4	+	546	3	NNC	ENSMUSG00000085525.8	novel	326	3	NA	NA	-49	0	at_least_one_novel_splicesite	FALSE	canonical	3	242	junction_1	5.5	1013	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGTGCTGTTCACATT	NA	False	NA	33	True	NA	NA	NA	146206851	146215004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_146207223_146209452_146209546_146214922
transcript_67049.nnic	chr4	+	464	2	NNC	ENSMUSG00000085525.8	novel	314	3	NA	NA	-49	0	at_least_one_novel_splicesite	FALSE	canonical	3	242	junction_1	0	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGTTAGAGGTATTGAAC	NA	False	NA	NA	False	NA	NA	NA	146206851	146209545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_146207223_146209452
transcript_67051.known	chr4	+	314	3	FSM	ENSMUSG00000085525.8	ENSMUST00000146671.8	314	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	211	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAGAAAAAAAAGAAA	NA	False	NA	20	True	NA	NA	NA	146206900	146214948	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_146207052_146209452_146209546_146214878
transcript_67052.known	chr4	+	282	3	FSM	ENSMUSG00000085525.8	ENSMUST00000124975.2	282	3	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	186	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGTGCTGTTCACATT	NA	False	NA	33	True	NA	NA	NA	146206941	146215004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_146207052_146209452_146209546_146214925
transcript_6708.nnic	chr10	-	2331	12	NNC	ENSMUSG00000039531.9	novel	2180	11	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	30.1971483520388	168	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGGTTTCTTGTCTAT	NA	False	NA	-1	True	AATAAA	-20	NA	33827230	33795137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_33795372_33803396_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33811084_33811254_33816153_33816276_33819645_33819757_33824924_33825495_33825743_33825861_33826685_33826862_33827126
transcript_6714.known	chr10	-	2180	11	FSM	ENSMUSG00000039531.9	ENSMUST00000218055.2	2180	11	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_10	16.213882940246	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGGTTTCTTGTCTAT	NA	False	NA	-1	True	AATAAA	-20	NA	33827255	33795137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_33795372_33803396_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33811084_33811254_33816153_33816276_33819645_33819757_33824924_33825495_33825743_33825861_33827126
transcript_6715.nic	chr10	-	2108	11	NIC	ENSMUSG00000039531.9	novel	2180	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_10	23.419863364247	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGGTTTCTTGTCTAT	NA	False	NA	-1	True	AATAAA	-20	NA	33827255	33795137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_-_33795372_33803396_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33811084_33811254_33816153_33816276_33819645_33819757_33824924_33825495_33825743_33825861_33827198
transcript_672.known	SIRV6	+	454	3	FSM	SIRV6A	SIRV611	454	3	0	0	0	0	multi-exon	FALSE	canonical	3	2656	junction_1	12443	12306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGGTGTTTATAGTTTA	NA	False	NA	NA	False	NA	NA	NA	1303	1950	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV6_+_1382_1468_1535_1640
transcript_6720.known	chr10	-	2005	11	FSM	ENSMUSG00000039531.9	ENSMUST00000218880.2	2005	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	26.3901496774838	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTGTTGGTTTTGGTTTC	NA	False	NA	-9	True	AATAAA	-12	NA	33827191	33795145	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_33795367_33803494_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33811084_33811254_33816153_33816276_33819645_33819757_33824924_33825495_33825743_33825861_33827126
transcript_6724.nic	chr10	-	2018	10	NIC	ENSMUSG00000039531.9	novel	2180	11	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_5	26.0687599803593	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGGTTTCTTGTCTAT	NA	False	NA	-1	True	AATAAA	-20	NA	33827262	33795137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_-_33795372_33803396_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33816153_33816276_33819645_33819757_33824924_33825495_33825743_33825861_33827126
transcript_6728.known	chr10	-	1872	9	FSM	ENSMUSG00000039531.9	ENSMUST00000218275.2	1872	9	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_5	25.4923395356331	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTGGTTTTGGTTTCTT	NA	False	NA	-7	True	AATAAA	-14	NA	33825856	33795143	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_33795372_33803396_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33816153_33816276_33819645_33819757_33824924_33825495_33825743
transcript_6729.known	chr10	-	562	3	FSM	ENSMUSG00000039531.9	ENSMUST00000218222.2	562	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	40	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATTGTCTGAGGCCCAAGG	NA	False	NA	NA	False	NA	NA	NA	33827221	33825072	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_33825495_33825743_33825861_33827198
transcript_67298.nnic	chr4	+	1089	6	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-297168	3413	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	149.231900075017	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	2257	False	NA	NA	False	NA	NA	NA	146289315	146627265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_146289526_146597241_146597335_146603534_146603615_146616526_146616611_146619877_146620005_146626770
transcript_67308.nnic	chr4	+	1079	6	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-82	3413	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	147.191575845902	50	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	146586401	146627265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_146586602_146597241_146597335_146603534_146603615_146616526_146616611_146619877_146620005_146626770
transcript_67316.nnic	chr4	+	1009	5	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-297168	3413	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_4	148.132542002087	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	2257	False	NA	NA	False	NA	NA	NA	146289315	146627265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_146289526_146597241_146597335_146616526_146616611_146619877_146620005_146626770
transcript_67319.nnic	chr4	+	1013	5	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-159974	3413	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	167.298199332808	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	146426509	146627265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_146426724_146597241_146597335_146616526_146616611_146619877_146620005_146626770
transcript_67325.known	chr4	+	3038	5	FSM	ENSMUSG00000056300.15	ENSMUST00000105735.9	3038	5	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_2	129.101462036648	445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	NA	False	NA	NA	False	NA	NA	NA	146586483	146623849	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_146586602_146597241_146597335_146616526_146616611_146619877_146620005_146621233
transcript_67328.nnic	chr4	+	1000	5	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-83	3413	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_4	149.310707921435	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	146586400	146627265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_146586602_146597241_146597335_146616526_146616611_146619877_146620005_146626770
transcript_67339.nic	chr4	+	912	4	ISM	ENSMUSG00000056300.15	ENSMUST00000105735.9	3038	5	-242	3597	-242	-1225	5prime_fragment	FALSE	canonical	3	87	junction_2	147.156001878581	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGTAACTTTAAAATTAGAG	NA	False	NA	NA	False	AATAAA	-19	NA	146586241	146620252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_146586602_146597241_146597335_146616526_146616611_146619877
transcript_67341.nnic	chr4	+	836	4	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-12	3413	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	190.482428469283	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	146586471	146627265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_146586602_146616526_146616611_146619877_146620005_146626770
transcript_67342.nnic	chr4	+	518	2	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-263	-34150	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	0	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAAAGAAAAGAAGAC	NA	False	NA	NA	False	TATAAA	-24	NA	146586220	146587327	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_146586602_146587190
transcript_67343.known	chr4	+	2953	4	FSM	ENSMUSG00000056300.15	ENSMUST00000179175.3	2953	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	159.826989794173	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	146599376	146623852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_146599500_146616526_146616611_146619877_146620005_146621233
transcript_6736.known	chr10	-	1090	7	FSM	ENSMUSG00000019782.11	ENSMUST00000019917.6	1090	7	0	0	0	0	multi-exon	FALSE	canonical	3	1217	junction_2	78.0243907733701	2140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGTTTACTTCCTCTTA	NA	False	NA	-23	True	AATAAA	-23	NA	33895620	33872550	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_33872845_33877132_33877196_33877653_33877787_33878419_33878564_33884988_33885120_33888067_33888134_33895361
transcript_6740.known	chr10	-	5323	2	FSM	ENSMUSG00000049872.9	ENSMUST00000069125.8	5323	2	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	0	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGATTGGTCTAGTTTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	33972515	33963810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_33968512_33971893
transcript_6741.known	chr10	-	1094	2	FSM	ENSMUSG00000046031.8	ENSMUST00000062784.8	1094	2	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	0	508	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTTTCTCCCAAGTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	34003980	34002062	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_34002563_34003386
transcript_6742.known	chr10	-	4389	6	FSM	ENSMUSG00000039497.9	ENSMUST00000048010.9	4389	6	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_4	20.6164982477626	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATCTCTCCTGCTCTGGTG	NA	False	NA	-10	True	AATAAA	-14	NA	34083711	34027388	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_34029971_34031904_34032113_34035964_34036205_34038731_34038986_34059687_34060157_34083075
transcript_6743.nic	chr10	-	1238	3	ISM	ENSMUSG00000039497.9	ENSMUST00000048010.9	4389	6	460	11004	-178	466	5prime_fragment	FALSE	canonical	3	186	junction_1	16	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAGTTTTTAAAAGCTTA	NA	False	NA	NA	False	NA	NA	NA	34083251	34038392	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_34038986_34059687_34060157_34083075
transcript_67435.known	chr4	-	750	5	FSM	ENSMUSG00000045699.5	ENSMUST00000049821.4	750	5	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	126.107840755442	401	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTGTTTTCTACCATTA	NA	False	NA	-2	True	AATACA	-20	NA	146994047	146976862	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_146977116_146978205_146978333_146982168_146982273_146991977_146992072_146993875
transcript_67436.nnic	chr4	-	1128	3	Antisense	novelGene_ENSMUSG00000083027.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATTAGGAGGCCGGCTCG	NA	False	NA	NA	False	NA	NA	NA	147029354	147026487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr4_-_147026809_147028347_147028945_147029144
transcript_67445.nnic	chr4	+	2816	6	NNC	ENSMUSG00000086147.3	novel	2295	5	NA	NA	-70	722	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	17.2788888531641	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147056362	147075934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_147056575_147065617_147065693_147067150_147067255_147071090_147071218_147073383_147074794_147075046
transcript_67446.nnic	chr4	+	796	6	NNC	ENSMUSG00000086147.3	novel	2295	5	NA	NA	-63	21543	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2.8	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTGCATAGATCATGAGAG	NA	False	NA	NA	False	NA	NA	NA	147056369	147096755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_147056575_147060200_147060315_147067196_147067255_147071090_147071218_147072052_147072158_147096568
transcript_67449.nnic	chr4	+	2723	5	NNC	ENSMUSG00000086147.3	novel	2295	5	NA	NA	-52	722	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	16.5586080332859	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147056380	147075934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_147056575_147067150_147067255_147071090_147071218_147073383_147074794_147075046
transcript_67456.known	chr4	+	309	2	FSM	ENSMUSG00000086147.3	ENSMUST00000132166.2	309	2	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGGAAAAGAATAATACTAGA	NA	False	NA	NA	False	NA	NA	NA	147056458	147058597	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_147056575_147058404
transcript_67467.nnic	chr4	+	857	6	Fusion	ENSMUSG00000067919.9_ENSMUSG00000086147.3	novel	2295	5	NA	NA	-72	-3274	multi-exon	FALSE	canonical	3	31	junction_2	217.040088462938	86	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTCTTCTATCATTAGTC	NA	False	NA	NA	False	TATAAA	-21	NA	147056360	147141977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_147056575_147058404_147058498_147115003_147115080_147136962_147137048_147140055_147140183_147141715
transcript_6747.nnic	chr10	-	667	4	NNC	ENSMUSG00000111149.2	novel	378	3	NA	NA	-91	693	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_3	34.5671648951558	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCTCGGTCTCTTTCT	NA	False	NA	-1	True	NA	NA	NA	34109618	34106209	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_34106388_34106902_34107071_34107314_34107420_34109402
transcript_67496.nnic	chr4	+	733	5	NNC	ENSMUSG00000067919.9	novel	3993	5	NA	NA	-46157	-3274	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	284.017935173115	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTCTTCTATCATTAGTC	NA	False	NA	NA	False	TATAAA	-21	NA	147060149	147141977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_147060315_147107818_147107913_147136962_147137048_147140055_147140183_147141715
transcript_6750.nnic	chr10	-	503	3	NNC	ENSMUSG00000111149.2	novel	378	3	NA	NA	-62	693	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	46	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCTCGGTCTCTTTCT	NA	False	NA	-1	True	NA	NA	NA	34109589	34106209	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_34106388_34106902_34107041_34109402
transcript_67500.known	chr4	+	3993	5	FSM	ENSMUSG00000067919.9	ENSMUST00000075775.6	3993	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	279.904894562421	850	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	2283	False	NA	NA	False	AATAAA	-19	NA	147106306	147145251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_147106458_147107818_147107913_147136962_147137048_147140055_147140183_147141715
transcript_6751.nnic	chr10	-	661	3	NNC	ENSMUSG00000111149.2	novel	378	3	NA	NA	-190	693	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_2	27.5	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCTCGGTCTCTTTCT	NA	False	NA	-1	True	NA	NA	NA	34109717	34106209	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_34106388_34106902_34107071_34109402
transcript_67513.nnic	chr4	+	1183	3	Fusion	ENSMUSG00000067919.9_ENSMUSG00000086147.3	novel	309	2	NA	NA	-16	5746	multi-exon	FALSE	non_canonical	0	0	junction_2	42	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTCTTTGCGAGACTGT	NA	False	NA	NA	False	NA	NA	NA	147056416	147114014	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_147056575_147107818_147107913_147113083
transcript_6754.known	chr10	-	378	3	FSM	ENSMUSG00000111149.2	ENSMUST00000216701.2	378	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	3.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGTACAACATGTCTCTA	NA	False	NA	NA	False	TTTAAA	-20	NA	34109527	34106902	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_34107071_34107314_34107400_34109402
transcript_6756.known	chr10	-	2727	12	FSM	ENSMUSG00000039480.15	ENSMUST00000105512.8	2727	12	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_7	20.4676725553911	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTTTGTATTATTGAATA	NA	False	NA	-1	True	AATAAA	-17	NA	34294535	34179604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_34180976_34186296_34186466_34189584_34189738_34190745_34190865_34198604_34198703_34200283_34200459_34274109_34274192_34275733_34275814_34279646_34279784_34283530_34283603_34287363_34287456_34294356
transcript_67570.known	chr4	+	2813	7	FSM	ENSMUSG00000067916.10	ENSMUST00000084149.10	2813	7	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_5	76.9805170156709	3720	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAATTCAAATGAGCCAAT	NA	False	NA	NA	False	AATAAA	-20	NA	147216494	147265036	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_147216647_147219028_147219122_147224494_147224577_147249797_147249844_147260303_147260362_147261203_147261331_147262781
transcript_6758.known	chr10	-	1978	11	FSM	ENSMUSG00000039480.15	ENSMUST00000130290.2	1978	11	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_6	26.4469279879535	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATACATAAAGAGACATG	NA	False	NA	NA	False	NA	NA	NA	34294524	34180260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_34180976_34186296_34186466_34189584_34189738_34190745_34190865_34198604_34198703_34200283_34200459_34275733_34275814_34279646_34279784_34283530_34283603_34287363_34287456_34294356
transcript_67581.nnic	chr4	+	717	5	Fusion	ENSMUSG00000078496.10_ENSMUSG00000078498.6_ENSMUSG00000087207.9	novel	585	4	NA	NA	-51	-840	multi-exon	FALSE	canonical	3	42	junction_3	227.846988130192	57	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGTGAATGTGACAAATG	4059	False	NA	17	True	NA	NA	NA	147314689	147597037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_147314893_147316807_147316901_147337800_147337859_147413438_147413566_147596801
transcript_67584.nnic	chr4	+	608	4	Fusion	ENSMUSG00000078496.10_ENSMUSG00000078498.6_ENSMUSG00000087207.9	novel	585	4	NA	NA	-35	-840	multi-exon	FALSE	canonical	0	0	junction_1	206.246346768993	71	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGTGAATGTGACAAATG	4075	False	NA	17	True	NA	NA	NA	147314705	147597037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_147314893_147337800_147337859_147413438_147413566_147596801
transcript_67586.nnic	chr4	+	595	4	Fusion	ENSMUSG00000078496.10_ENSMUSG00000087207.9	novel	585	4	NA	NA	-35	-853	multi-exon	FALSE	canonical	0	0	junction_1	180.547931462965	17	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAACCTTACAAATGCAGTG	4075	False	NA	4	True	NA	NA	NA	147314705	147597024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_147314893_147337800_147337859_147472778_147472906_147596801
transcript_67587.nnic	chr4	+	653	4	Fusion	ENSMUSG00000078496.10_ENSMUSG00000078498.6_ENSMUSG00000087207.9	novel	585	4	NA	NA	-33	-840	multi-exon	FALSE	canonical	0	0	junction_1	206.246346768993	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGTGAATGTGACAAATG	4077	False	NA	17	True	NA	NA	NA	147314707	147597037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_147314893_147337753_147337859_147413438_147413566_147596801
transcript_67593.known	chr4	+	585	4	FSM	ENSMUSG00000087207.9	ENSMUST00000125785.8	585	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	228.391476782008	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAACAGTGTAAGTTTGTT	4110	False	NA	NA	False	AATACA	-9	NA	147314740	147343085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_147314893_147316807_147316901_147337753_147337859_147342850
transcript_6762.known	chr10	-	761	7	FSM	ENSMUSG00000039480.15	ENSMUST00000099973.4	761	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	35.3714417134627	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTATTGCTTCGTAATAC	NA	False	NA	NA	False	AATAAA	-15	NA	34294477	34273063	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_34273238_34274109_34274195_34275733_34275814_34279646_34279784_34283530_34283603_34287363_34287456_34294356
transcript_6766.known	chr10	-	555	2	FSM	ENSMUSG00000111753.2	ENSMUST00000214107.2	555	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTGACTTAGTTCCAT	NA	False	NA	NA	False	NA	NA	NA	35361392	35354822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_35355139_35361153
transcript_67665.nnic	chr4	+	784	6	Fusion	ENSMUSG00000067919.9_ENSMUSG00000078498.6	novel	3993	5	NA	NA	-31	828	multi-exon	FALSE	non_canonical	0	0	junction_1	32	23	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTTTTAAAAAAAATGCTG	2252	False	NA	NA	False	NA	NA	NA	147106275	147419019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_147106458_147395015_147395147_147409276_147409335_147413438_147413566_147414396_147414502_147418838
transcript_67668.nnic	chr4	+	817	6	Fusion	ENSMUSG00000078498.6_ENSMUSG00000087207.9	novel	585	4	NA	NA	-45	828	multi-exon	FALSE	non_canonical	0	0	junction_1	32	56	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTTTTAAAAAAAATGCTG	4065	False	NA	NA	False	NA	NA	NA	147314695	147419019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_147314893_147394997_147395147_147409276_147409335_147413438_147413566_147414396_147414502_147418838
transcript_6767.known	chr10	-	3218	1	FSM	ENSMUSG00000063953.4	ENSMUST00000080898.4	3218	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1191	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-38	NA	35587888	35584670	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_35584700_35587900
transcript_67672.nnic	chr4	+	761	6	Fusion	ENSMUSG00000078498.6_ENSMUSG00000087207.9	novel	585	4	NA	NA	-8	828	multi-exon	FALSE	non_canonical	0	0	junction_1	32	45	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTTTTAAAAAAAATGCTG	4102	False	NA	NA	False	NA	NA	NA	147314732	147419019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_147314893_147395016_147395147_147409276_147409335_147413438_147413566_147414396_147414502_147418838
transcript_67684.nnic	chr4	+	639	5	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	-66	828	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	34.6410161513775	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTTTTAAAAAAAATGCTG	NA	False	NA	NA	False	NA	NA	NA	147390064	147419019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_147390233_147409276_147409335_147413438_147413566_147414396_147414502_147418838
transcript_6769.known	chr10	+	2005	14	FSM	ENSMUSG00000019777.17	ENSMUST00000019911.14	2005	14	0	0	0	0	multi-exon	TRUE	canonical	3	1084	junction_4	88.4199902429095	688	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTTCTGTCTGTTTATT	NA	False	NA	14	True	ATTAAA	-15	NA	36850539	36877885	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_36850800_36861122_36861236_36862302_36862421_36864075_36864151_36865145_36865285_36867752_36867895_36869603_36869697_36869771_36869881_36872984_36873126_36873389_36873499_36873962_36874094_36874409_36874566_36876364_36876423_36877524
transcript_67698.known	chr4	+	2800	4	FSM	ENSMUSG00000078498.6	ENSMUST00000148762.4	2800	4	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	71.5976411777806	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147390130	147418191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_147390233_147409230_147409335_147413438_147413566_147415724
transcript_6772.known	chr10	-	4048	2	FSM	ENSMUSG00000069662.6	ENSMUST00000092584.6	4048	2	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_1	0	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGAATCGTGTTATTAAGT	NA	False	NA	-3	True	AATAAA	-16	NA	37014916	37009370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_37012932_37014429
transcript_67729.nnic	chr4	+	970	5	Fusion	ENSMUSG00000078498.6_ENSMUSG00000078497.10	novel	2800	4	NA	NA	-66	5664	multi-exon	FALSE	canonical	0	0	junction_1	231.416696675067	44	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTGTATAATGGTATTCT	NA	False	NA	12	True	NA	NA	NA	147390064	147481125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_147390233_147447267_147447362_147469676_147469759_147472778_147472906_147480626
transcript_67732.nnic	chr4	+	971	5	NNC	ENSMUSG00000078497.10	novel	572	5	NA	NA	-50782	5664	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_4	224.400311942742	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTGTATAATGGTATTCT	NA	False	NA	12	True	NA	NA	NA	147394977	147481125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_147395147_147447267_147447362_147469676_147469759_147472778_147472906_147480626
transcript_67733.known	chr4	+	1250	5	FSM	ENSMUSG00000078497.10	ENSMUST00000154154.2	1250	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	206.815739246316	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGAGAGAAACCTTACAAAT	2377	False	NA	NA	False	NA	NA	NA	147445767	147475461	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_147445910_147447267_147447362_147469676_147469759_147472778_147472906_147474656
transcript_67736.nnic	chr4	+	1003	5	NNC	ENSMUSG00000078497.10	novel	1250	5	NA	NA	-51	5664	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	227.889638860568	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTGTATAATGGTATTCT	2318	False	NA	12	True	NA	NA	NA	147445708	147481125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_147445910_147447267_147447362_147469676_147469759_147472778_147472906_147480626
transcript_67741.known	chr4	+	572	5	FSM	ENSMUSG00000078497.10	ENSMUST00000133078.8	572	5	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	194.465292533141	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGTCTTTTAAATGTAAT	2369	False	NA	NA	False	NA	NA	NA	147445759	147474746	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_147445939_147447267_147447362_147469676_147469759_147472778_147472906_147474656
transcript_67742.nnic	chr4	+	312	3	Genic_Genomic	ENSMUSG00000082248.2	novel	559	1	NA	NA	-90	13025	multi-exon	FALSE	canonical	0	0	junction_2	24.5	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTTTCTCTGGTAAAACT	NA	False	NA	NA	False	NA	NA	NA	147527837	147541511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr4_+_147527997_147536170_147536264_147541451
transcript_6778.known	chr10	+	337	3	FSM	ENSMUSG00000046463.6	ENSMUST00000217338.2	337	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	7.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCAAGAAGACGAGCAAGGA	NA	False	NA	NA	False	NA	NA	NA	37017084	37026592	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_37017182_37024872_37025003_37026482
transcript_6780.nnic	chr10	+	1045	3	NNC	ENSMUSG00000046463.6	novel	1791	3	NA	NA	1350	3	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	8.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTTGGTCATGGTGTCT	NA	False	NA	7	True	NA	NA	NA	37018434	37027314	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_37018518_37024872_37025003_37026482
transcript_6781.nnic	chr10	+	1042	3	NNC	ENSMUSG00000046463.6	novel	1791	3	NA	NA	1350	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	8.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGCCTTGGTCATGGTG	NA	False	NA	4	True	NA	NA	NA	37018434	37027311	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_37018518_37024872_37025003_37026482
transcript_6784.known	chr10	-	707	5	FSM	ENSMUSG00000051736.9	ENSMUST00000125042.8	707	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.9869720947369	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATCATCTCACGGTCTGC	NA	False	NA	-66	True	NA	NA	NA	39009896	38994863	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_38995031_38996221_38996393_38998172_38998332_39008242_39008375_39009818
transcript_67845.nnic	chr4	+	730	5	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-83	-840	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	123.241632576009	207	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGTGAATGTGACAAATG	NA	False	NA	17	True	NA	NA	NA	147576790	147597037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_147577009_147578832_147578927_147592042_147592098_147595209_147595337_147596801
transcript_6785.known	chr10	-	721	5	FSM	ENSMUSG00000051736.9	ENSMUST00000124941.8	721	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	11.3880419739304	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGGTGATGACAATGGTT	NA	False	NA	-17	True	AATAAA	-14	NA	39009896	38994814	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_38995031_38996253_38996393_38998172_38998329_39008242_39008375_39009818
transcript_67871.nnic	chr4	+	595	4	Fusion	ENSMUSG00000078496.10_ENSMUSG00000078497.10	novel	1244	3	NA	NA	-27	-840	multi-exon	FALSE	canonical	0	0	junction_1	138.96362433705	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGTGAATGTGACAAATG	2342	False	NA	17	True	NA	NA	NA	147445732	147597037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_+_147445910_147592042_147592098_147595209_147595337_147596801
transcript_6791.known	chr10	-	674	5	FSM	ENSMUSG00000051736.9	ENSMUST00000135785.8	674	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	13.8631706330118	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTCATTGGGTGATGACAA	NA	False	NA	-22	True	AATAAA	-9	NA	39009910	38994819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_38995031_38996253_38996393_38998172_38998329_39008242_39008375_39009874
transcript_6794.known	chr10	+	2929	12	FSM	ENSMUSG00000019845.9	ENSMUST00000019991.8	2929	12	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_3	7.58423767804153	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATCTCTGTGTTAAGTCC	NA	False	NA	NA	False	AATATA	-18	NA	39010018	39027054	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_39010104_39010201_39010276_39010983_39011037_39013129_39013188_39016818_39016935_39018250_39018373_39020370_39020559_39020751_39020928_39021568_39021710_39023307_39023449_39023758_39023934_39025454
transcript_6797.known	chr10	+	4192	11	FSM	ENSMUSG00000019845.9	ENSMUST00000213459.2	4192	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	48.3434587095297	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAAAAAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	39010063	39028538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_39010104_39010201_39010276_39010983_39011037_39013129_39013188_39016818_39016935_39018250_39018373_39020370_39020559_39021568_39021710_39023307_39023449_39023758_39023934_39025454
transcript_68.known	ERCC-00144	+	521	1	FSM	ERCC-00144A	DQ854995	521	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	218	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00144_+_0_500
transcript_6804.nic	chr10	+	1220	5	NIC	ENSMUSG00000019843.15	novel	333	4	NA	NA	-133	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	54.9152756525905	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCAGGACAGGTGTTTGG	NA	False	NA	NA	False	AATAAA	-27	NA	39409132	39440419	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_+_39409330_39409629_39409707_39409804_39409959_39427382_39427515_39439759
transcript_6805.nic	chr10	+	2263	5	NIC	ENSMUSG00000019843.15	novel	333	4	NA	NA	-218	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	54.9152756525905	81	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTTTATTTGTGTACA	NA	False	NA	NA	False	ATTAAA	-30	NA	39409047	39441377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_+_39409330_39409629_39409707_39409804_39409959_39427382_39427515_39439759
transcript_6812.known	chr10	-	660	4	FSM	ENSMUSG00000087177.8	ENSMUST00000149830.8	660	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	9.56846672960488	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCAGCCGCAGCAGGATG	5658	False	NA	NA	False	NA	NA	NA	39608002	39530460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_39530685_39531835_39531926_39557468_39557546_39607733
transcript_6813.known	chr10	-	438	4	FSM	ENSMUSG00000087177.8	ENSMUST00000133302.8	438	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	8.65383665716478	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCTGGTGTGGCCTGGAC	5663	False	NA	NA	False	NA	NA	NA	39607997	39498693	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_39498724_39508945_39509013_39557468_39557546_39607733
transcript_6814.known	chr10	-	1660	3	FSM	ENSMUSG00000087177.8	ENSMUST00000151921.8	1660	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	10.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAGTGTTTTTTCAGCAT	5658	False	NA	-1	True	AATAAA	-16	NA	39608002	39497409	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_39498724_39557468_39557546_39607733
transcript_6815.known	chr10	-	1756	2	FSM	ENSMUSG00000087177.8	ENSMUST00000153113.2	1756	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAGAGAGAGAG	5697	False	NA	NA	False	TATAAA	-34	NA	39607963	39597408	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_39598935_39607733
transcript_6818.known	chr10	+	2867	9	FSM	ENSMUSG00000019842.7	ENSMUST00000019987.7	2867	9	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	7.56534037568701	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCTTTCTTTTCTTTCTT	NA	False	NA	NA	False	TATAAA	-16	NA	39488929	39531303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_39489343_39501845_39502656_39510530_39510721_39515215_39515395_39517301_39517391_39521703_39521773_39522844_39522962_39526901_39526977_39530378
transcript_68195.known	chr4	+	628	4	FSM	ENSMUSG00000065999.14	ENSMUST00000139784.8	628	4	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	19.7540431867054	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAACACAAGCGAAA	NA	False	NA	NA	False	NA	NA	NA	147637733	147667583	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_147637884_147661528_147661587_147665698_147665826_147667290
transcript_68196.known	chr4	+	2762	6	FSM	ENSMUSG00000065999.14	ENSMUST00000081742.7	2762	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	34.5913283931103	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147637795	147669655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_147637884_147646898_147646979_147647371_147647416_147661528_147661587_147665698_147665826_147667290
transcript_68224.known	chr4	-	2594	5	FSM	ENSMUSG00000066000.13	ENSMUST00000105720.8	2594	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	194.219592214586	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	-5	True	AATAAA	-18	NA	147726970	147696393	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726791
transcript_68233.known	chr4	-	574	5	FSM	ENSMUSG00000066000.13	ENSMUST00000133006.2	574	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	194.56666595283	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCAAAGTACACCTCATAAA	NA	False	NA	NA	False	AATATA	-14	NA	147726953	147698367	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726820
transcript_6825.known	chr10	+	10789	33	FSM	ENSMUSG00000019841.16	ENSMUST00000131186.8	10789	33	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	18.85944619912	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATGGAAACCAAATTAAAA	NA	False	NA	-25	True	TTTAAA	-29	NA	39608122	39751164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_39608610_39618686_39618815_39659138_39659329_39666764_39666840_39670859_39671021_39675876_39675974_39680947_39681043_39681595_39681701_39682657_39682743_39682830_39682980_39689966_39690087_39693137_39693376_39696443_39696587_39697101_39701255_39703705_39704602_39706894_39706978_39708513_39708640_39711155_39711349_39712621_39712734_39714437_39714554_39716880_39717000_39719406_39719526_39722137_39722280_39722664_39722910_39723970_39724080_39727862_39728070_39730694_39730805_39735102_39735218_39738689_39738828_39739733_39739925_39740589_39740837_39743288_39743499_39750079
transcript_68256.nnic	chr4	-	663	4	NNC	ENSMUSG00000062518.8	novel	2885	4	NA	NA	4000	-2317	at_least_one_novel_splicesite	FALSE	canonical	3	115	junction_2	63.3456128446688	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	147783010	147760275	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_147760511_147762673_147762801_147766723_147766828_147782813
transcript_6826.known	chr10	+	10713	32	FSM	ENSMUSG00000019841.16	ENSMUST00000019986.13	10713	32	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_10	17.5666413596239	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTATGACTTTTATCTTAA	NA	False	NA	18	True	AATAAA	-14	NA	39608113	39751207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_39608610_39659138_39659329_39666764_39666840_39670859_39671021_39675876_39675974_39680947_39681043_39681595_39681701_39682657_39682743_39682830_39682980_39689966_39690087_39693137_39693376_39696443_39696587_39697101_39701255_39703705_39704602_39706894_39706978_39708513_39708640_39711155_39711349_39712621_39712734_39714437_39714554_39716880_39717000_39719406_39719526_39722137_39722280_39722664_39722910_39723970_39724080_39727862_39728070_39730694_39730805_39735102_39735218_39738689_39738828_39739733_39739925_39740589_39740837_39743288_39743499_39750079
transcript_68262.known	chr4	-	2885	4	FSM	ENSMUSG00000062518.8	ENSMUST00000117638.2	2885	4	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_2	89.2238134630486	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147787010	147757958	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_147760511_147762673_147762801_147766723_147766828_147786908
transcript_6827.known	chr10	-	3528	4	FSM	ENSMUSG00000096687.9	ENSMUST00000178563.3	3528	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	4.98887651569859	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTGACTGCTTTGTAGCA	NA	False	NA	NA	False	AATAAA	-26	NA	39775234	39766008	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_39768926_39770011_39770129_39770767_39770937_39774909
transcript_6828.known	chr10	-	1708	4	FSM	ENSMUSG00000071335.6	ENSMUST00000239163.2	1708	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGAAGCCAAGGAAAGTCT	NA	False	NA	NA	False	NA	NA	NA	39836086	39822918	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_39824120_39824995_39825113_39826612_39826782_39835865
transcript_6829.known	chr10	-	1853	10	FSM	ENSMUSG00000038510.13	ENSMUST00000045114.13	1853	10	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_9	383.349983535337	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAAGGCTTTTTACCCA	6591	False	NA	85	True	NA	NA	NA	40122998	40099241	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_40099917_40101292_40101438_40103554_40103658_40109103_40109204_40110817_40110895_40112118_40112201_40115743_40115784_40119851_40119890_40120580_40120714_40122538
transcript_68290.nnic	chr4	-	2707	4	NNC	ENSMUSG00000078495.11	novel	2405	4	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	106.377733676847	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	8355	False	NA	NA	False	NA	NA	NA	147860308	147838430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845783_147860095
transcript_68292.known	chr4	-	2405	4	FSM	ENSMUSG00000078495.11	ENSMUST00000122309.2	2405	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	106.377733676847	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAGTATCTGGCAAACT	8373	False	NA	NA	False	NA	NA	NA	147860290	147838655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_147840693_147842158_147842286_147845677_147845783_147860154
transcript_68302.nnic	chr4	-	1185	2	Genic_Genomic	ENSMUSG00000093594.2	novel	2516	4	NA	NA	24	-26137	multi-exon	TRUE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATACCTTGGGGGCATTGAG	9495	False	NA	NA	False	NA	NA	NA	147894273	147892912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr4_-_147893719_147893894
transcript_68303.known	chr4	-	2729	6	FSM	ENSMUSG00000078495.11	ENSMUST00000105734.10	2729	6	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	98.3963413953995	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	9523	False	NA	NA	False	NA	NA	NA	147894245	147838430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_147840693_147842158_147842286_147845677_147845736_147880114_147880182_147891546_147891641_147894124
transcript_68304.known	chr4	-	426	1	FSM	ENSMUSG00000080059.5	ENSMUST00000116174.3	426	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	149	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGGATGCTGGGTTAA	4113	False	NA	NA	False	NA	NA	NA	147906659	147906233	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_147906200_147906700
transcript_68309.nnic	chr4	-	1915	11	NIC	ENSMUSG00000029022.19	novel	1879	12	NA	NA	-39	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_10	96.0689856301189	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGTCTCCATGTAAGC	NA	False	NA	-12	True	AATAAA	-16	NA	147953019	147945247	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947025_147947353_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147951787_147952060_147952825
transcript_68311.nic	chr4	-	1553	10	NIC	ENSMUSG00000029022.19	novel	1879	12	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	73.7735942588982	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGTCTCCATGTAAGC	NA	False	NA	-12	True	AATAAA	-16	NA	147953001	147945247	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_147945471_147945810_147945949_147946702_147946800_147946894_147947025_147947353_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
transcript_68314.known	chr4	-	1813	10	FSM	ENSMUSG00000029022.19	ENSMUST00000030886.15	1813	10	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_4	26.1538657058192	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAAGCCTCTCTTTTTTTT	NA	False	NA	1	True	AATAAA	-29	NA	147953176	147945234	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947025_147947353_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
transcript_68319.known	chr4	-	1909	9	FSM	ENSMUSG00000029022.19	ENSMUST00000156374.9	1909	9	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_8	23.8995292840675	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGTCTCCATGTAAGC	NA	False	NA	-12	True	AATAAA	-16	NA	147952956	147945247	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
transcript_68325.known	chr4	-	1879	12	FSM	ENSMUSG00000029022.19	ENSMUST00000119975.3	1879	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_10	115.583464172357	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGTCTCCATGTAAGC	NA	False	NA	-12	True	AATAAA	-16	NA	147952940	147945247	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_147945471_147945810_147945949_147946702_147946800_147946894_147947025_147947353_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147951787_147952060_147952525_147952641_147952825
transcript_68327.known	chr4	-	4241	19	FSM	ENSMUSG00000029020.14	ENSMUST00000105716.9	4241	19	0	0	0	0	multi-exon	TRUE	canonical	2	51	junction_4	9.87139526330723	143	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGCTCTCTGCCTGCAG	NA	False	NA	-4	True	AATAAA	-19	NA	147989144	147958055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_147959916_147961407_147961543_147963170_147963368_147964398_147964555_147966473_147966695_147967337_147967441_147967674_147967780_147968083_147968211_147969909_147970032_147970137_147970206_147970727_147970882_147971662_147971771_147971871_147971981_147973076_147973202_147974570_147974734_147979019_147979156_147982920_147983100_147987811_147987955_147989114
transcript_6833.known	chr10	-	1296	10	FSM	ENSMUSG00000038510.13	ENSMUST00000183309.8	1296	10	0	0	0	0	multi-exon	FALSE	canonical	3	1057	junction_7	76.0030863570847	1556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTATGTCACAGTGTGG	6557	False	NA	42	True	TTTAAA	-17	NA	40123032	40099422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_40099917_40101292_40101438_40103554_40103658_40109103_40109204_40110817_40110895_40112118_40112201_40115743_40115784_40119851_40119890_40120580_40120714_40122948
transcript_68331.known	chr4	-	3243	19	FSM	ENSMUSG00000019055.16	ENSMUST00000019199.14	3243	19	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_3	12.7855049099544	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCGGTCTGGTTATACTTC	NA	False	NA	NA	False	AATAAA	-39	NA	148021224	147994209	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_147995332_147997676_147997803_148000253_148000401_148001761_148001867_148002590_148002657_148003236_148003351_148004625_148004768_148005463_148005590_148005854_148005960_148007580_148007703_148009973_148010106_148010603_148010706_148011479_148011578_148012914_148012979_148013996_148014110_148015578_148015743_148016083_148016221_148017187_148017280_148021058
transcript_68332.known	chr4	-	1059	7	FSM	ENSMUSG00000019055.16	ENSMUST00000105712.2	1059	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	31.7004206070939	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTTGCGACGGAGTTTC	NA	False	NA	NA	False	AATAAA	-20	NA	148021182	148012073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_148012439_148012914_148012979_148013996_148014110_148015578_148015743_148016083_148016221_148017187_148017280_148021058
transcript_68334.nnic	chr4	-	327	3	NNC	ENSMUSG00000019055.16	novel	3243	19	NA	NA	-21	-342	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	35.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTGGCTCTCAGCCAAT	NA	False	NA	NA	False	NA	NA	NA	148021245	148016487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_148016536_148017187_148017280_148021058
transcript_68336.known	chr4	+	2731	3	FSM	ENSMUSG00000044496.7	ENSMUST00000103232.2	2731	3	0	0	0	0	multi-exon	FALSE	canonical	3	503	junction_1	12.5	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTACTGGTCTGTGTGTGG	NA	False	NA	21	True	AATAAA	-16	NA	148025351	148031771	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_148026515_148029064_148029919_148031057
transcript_68338.known	chr4	+	781	3	FSM	ENSMUSG00000029019.9	ENSMUST00000103231.5	781	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	1	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGTCCGTGAGTTTCAA	NA	False	NA	NA	False	AATAAA	-30	NA	148070244	148071662	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_148070559_148070752_148070976_148071418
transcript_68339.known	chr4	+	865	3	FSM	ENSMUSG00000041616.10	ENSMUST00000103230.5	865	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGATGTGCTTCTTTGGCT	NA	False	NA	NA	False	AATAAA	-29	NA	148085178	148086536	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_148085412_148085514_148085842_148086231
transcript_6834.known	chr10	-	452	6	FSM	ENSMUSG00000019837.9	ENSMUST00000216847.2	452	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	265.119897404929	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATAAACCTGTGGAGCTGG	8695	False	NA	NA	False	NA	NA	NA	40133558	40125721	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_40125828_40127151_40127266_40130259_40130305_40130396_40130461_40133208_40133290_40133516
transcript_68340.known	chr4	-	3306	23	FSM	ENSMUSG00000029016.14	ENSMUST00000030879.12	3306	23	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_12	12.7042811811837	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTCAGTAGTCCCCACT	7422	False	NA	NA	False	ATTAAA	-35	NA	148123270	148090590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_148091319_148093137_148093264_148093355_148093464_148095110_148095268_148095428_148095587_148097073_148097261_148098132_148098240_148098323_148098484_148098588_148098743_148098957_148099085_148101308_148101436_148101952_148102120_148102359_148102474_148103297_148103431_148104174_148104234_148105916_148105985_148107823_148107951_148108565_148108673_148110989_148111057_148113006_148113073_148113843_148113910_148122370_148122431_148123137
transcript_68346.known	chr4	-	5198	23	FSM	ENSMUSG00000029016.14	ENSMUST00000137724.8	5198	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	28.3066151775502	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTTGTCTCCACGGTGCT	7414	False	NA	-1	True	AATAAA	-22	NA	148123278	148088715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_148091319_148093137_148093264_148093355_148093464_148095110_148095268_148095428_148095587_148097073_148097261_148098132_148098240_148098323_148098484_148098588_148098743_148098957_148099085_148101308_148101436_148101952_148102120_148102359_148102474_148103297_148103431_148104174_148104234_148105916_148105985_148107823_148107951_148108565_148108682_148110989_148111057_148113006_148113073_148113843_148113910_148122370_148122431_148123137
transcript_6835.known	chr10	-	2526	6	FSM	ENSMUSG00000019837.9	ENSMUST00000217537.2	2526	6	0	0	0	0	multi-exon	FALSE	canonical	3	403	junction_5	105.423716496811	1973	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAATAGTTGATGGTTGCA	8586	False	NA	-31	True	AATAAA	-15	NA	40133667	40123698	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_40125828_40127151_40127266_40130259_40130305_40130396_40130461_40133208_40133290_40133574
transcript_68352.known	chr4	+	2652	12	FSM	ENSMUSG00000029009.18	ENSMUST00000097788.11	2652	12	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	31.6729151439997	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATGGAGGCTTGCTCTTG	NA	False	NA	18	True	AAGAAA	-32	NA	148123533	148140663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_148123590_148126040_148126287_148127881_148128121_148128900_148129012_148132529_148132724_148135828_148136080_148136321_148136457_148136555_148136737_148136970_148137154_148138036_148138139_148139441_148139562_148139829
transcript_68368.known	chr4	-	3996	5	FSM	ENSMUSG00000029007.9	ENSMUST00000030865.9	3996	5	0	0	0	0	multi-exon	FALSE	canonical	3	1081	junction_4	44.285296657017	4597	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTGCTGTGTGATTAAT	NA	False	NA	-3	True	AATAAA	-18	NA	148172488	148161517	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_148165062_148166019_148166216_148166727_148166834_148168415_148168451_148172373
transcript_68369.known	chr4	-	194	2	FSM	ENSMUSG00000029007.9	ENSMUST00000137393.2	194	2	0	0	0	0	multi-exon	FALSE	canonical	3	1081	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTGTGTCACCTGGGGT	NA	False	NA	NA	False	NA	NA	NA	148172488	148168371	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_148168451_148172373
transcript_68371.known	chr4	+	1162	10	FSM	ENSMUSG00000029003.12	ENSMUST00000084129.9	1162	10	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	269.730638385688	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGATGAACATGTGTATCG	NA	False	NA	30	True	AATAAA	-38	NA	148215371	148230156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_148215424_148224299_148224478_148225241_148225292_148225371_148225491_148227442_148227515_148227998_148228100_148228720_148228816_148229110_148229185_148229560_148229654_148229828
transcript_68379.known	chr4	+	1535	8	FSM	ENSMUSG00000029003.12	ENSMUST00000030860.9	1535	8	0	0	0	0	multi-exon	FALSE	canonical	3	623	junction_4	29.3730405338651	2784	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGATGAACATGTGTATCG	NA	False	NA	30	True	AATAAA	-38	NA	148224638	148230156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_148225292_148225371_148225491_148227442_148227515_148227998_148228100_148228720_148228816_148229110_148229185_148229560_148229654_148229828
transcript_68380.known	chr4	+	949	8	FSM	ENSMUSG00000029003.12	ENSMUST00000105707.2	949	8	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_6	213.795439137317	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAGGATGAACATGTGTA	NA	False	NA	27	True	AATAAA	-35	NA	148225199	148230153	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_148225292_148225371_148225491_148227442_148227515_148227998_148228100_148228720_148228816_148229110_148229185_148229582_148229654_148229828
transcript_68394.known	chr4	-	1938	6	FSM	ENSMUSG00000055401.15	ENSMUST00000105706.8	1938	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_5	308.087000699478	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATGTTCATCCTGTTTG	NA	False	NA	54	True	NA	NA	NA	148236365	148230172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148235544
transcript_68395.known	chr4	-	1346	6	FSM	ENSMUSG00000055401.15	ENSMUST00000030858.14	1346	6	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_5	252.506158340742	873	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTTTGAGGGCTTACA	NA	False	NA	-17	True	AATAAA	-17	NA	148236370	148230243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236070
transcript_68396.known	chr4	-	811	6	FSM	ENSMUSG00000055401.15	ENSMUST00000134261.2	811	6	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_5	248.50786707869	627	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCAGTTCTGGAAAGGCT	NA	False	NA	NA	False	NA	NA	NA	148236382	148230574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236286
transcript_68398.known	chr4	-	1163	6	FSM	ENSMUSG00000055401.15	ENSMUST00000056965.12	1163	6	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_5	262.901958912443	969	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGGTTTGAGGGCTTAC	NA	False	NA	-18	True	AATAAA	-16	NA	148236516	148230244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236398
transcript_68399.nnic	chr4	-	1125	6	NNC	ENSMUSG00000055401.15	novel	1346	6	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_5	294.890895078163	553	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTTTGAGGGCTTACA	NA	False	NA	-17	True	AATAAA	-17	NA	148236630	148230243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236551
transcript_684.known	SIRV6	-	276	1	FSM	SIRV6B	SIRV617	276	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3700	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTCTACTTGGGCACCT	NA	False	NA	NA	False	NA	NA	NA	1820	1544	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV6_-_1500_1800
transcript_68414.known	chr4	-	794	5	FSM	ENSMUSG00000055401.15	ENSMUST00000126615.8	794	5	0	0	0	0	multi-exon	FALSE	canonical	3	782	junction_1	8.18535277187245	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCGTGTCACCAACAGC	NA	False	NA	NA	False	NA	NA	NA	148234176	148230548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835
transcript_68418.known	chr4	-	1829	6	FSM	ENSMUSG00000029001.16	ENSMUST00000057907.10	1829	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_4	3.00665927567458	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTGTGCCCTGCGGCTTT	NA	False	NA	-6	True	AATAAA	-13	NA	148244540	148237259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_148238102_148240602_148240739_148240851_148240948_148241036_148241164_148242993_148243281_148244199
transcript_6842.known	chr10	-	488	3	FSM	ENSMUSG00000019837.9	ENSMUST00000217457.2	488	3	0	0	0	0	multi-exon	FALSE	canonical	3	637	junction_1	13.5	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGGTCTTGTATGCAATT	4703	False	NA	-16	True	AAAACA	-21	NA	40130325	40125519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_40125828_40127151_40127266_40130259
transcript_68420.known	chr4	-	823	6	FSM	ENSMUSG00000029001.16	ENSMUST00000172472.8	823	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	13.905394636615	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACTGGGCCGGCTGGTAC	NA	False	NA	NA	False	NA	NA	NA	148244332	148238028	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_148238102_148240602_148240739_148240851_148240948_148241065_148241164_148242993_148243281_148244199
transcript_68421.known	chr4	-	1034	5	FSM	ENSMUSG00000029001.16	ENSMUST00000105705.9	1034	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	15.4979837398289	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGCCTAGACCTGTTTC	NA	False	NA	NA	False	NA	NA	NA	148244334	148237723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_148238102_148240602_148240739_148241065_148241164_148242993_148243281_148244199
transcript_68423.known	chr4	-	1403	5	FSM	ENSMUSG00000029001.16	ENSMUST00000151127.8	1403	5	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	3.34477204006491	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCTGAGCGGTGGTGGGA	NA	False	NA	NA	False	NA	NA	NA	148244308	148239954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_148240739_148240851_148240948_148241036_148241164_148242993_148243281_148244199
transcript_68427.nnic	chr4	+	1358	7	NNC	ENSMUSG00000041556.9	novel	1288	6	NA	NA	-447	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	23.3148736503832	41	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCACAGATGAATGGACATC	NA	False	NA	23	True	NA	NA	NA	148244630	148250881	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_148244760_148245136_148245169_148248531_148248913_148249282_148249413_148249484_148249581_148250100_148250231_148250421
transcript_68428.known	chr4	+	1288	6	FSM	ENSMUSG00000041556.9	ENSMUST00000047951.9	1288	6	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	6.34350061086148	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCACAGATGAATGGACATC	NA	False	NA	23	True	NA	NA	NA	148245077	148250881	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_148245169_148248531_148248913_148249282_148249413_148249484_148249581_148250100_148250231_148250421
transcript_68432.known	chr4	-	576	3	FSM	ENSMUSG00000047719.3	ENSMUST00000156686.2	576	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	43.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCCATTCCAACAACACCA	NA	False	NA	NA	False	NA	NA	NA	148529218	148520945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_148521100_148528384_148528587_148528998
transcript_68433.nnic	chr4	-	2485	3	NNC	ENSMUSG00000047719.3	novel	576	3	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	31.5	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCAGTGGCTTTGTTTCTT	NA	False	NA	0	True	ATTAAA	-16	NA	148529236	148518951	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_148521100_148528384_148528587_148529101
transcript_68435.known	chr4	-	2992	2	FSM	ENSMUSG00000047719.3	ENSMUST00000051633.3	2992	2	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCAGTGGCTTTGTTTCTT	NA	False	NA	0	True	ATTAAA	-16	NA	148529228	148518951	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_148521100_148528384
transcript_68437.known	chr4	+	1003	5	FSM	ENSMUSG00000028991.16	ENSMUST00000057580.8	1003	5	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	19.0656759649376	760	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGAGGCCTCTGACTATGG	NA	False	NA	16	True	AATAAA	-22	NA	148533081	148539430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_148533145_148536713_148536890_148537478_148537588_148538214_148538448_148539008
transcript_6844.known	chr10	-	3206	8	FSM	ENSMUSG00000075232.7	ENSMUST00000238969.2	3206	8	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_3	48.542848734549	781	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAAGTTTTCTGTTTGGTGT	NA	False	NA	-5	True	AATAAA	-29	NA	40178184	40163453	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_40165466_40166113_40166270_40166373_40166612_40167989_40168033_40169159_40169263_40170176_40170304_40170712_40170800_40177744
transcript_68440.known	chr4	+	8564	58	FSM	ENSMUSG00000028991.16	ENSMUST00000103221.10	8564	58	0	0	0	0	multi-exon	TRUE	canonical	2	74	junction_19	24.6853638803358	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGTGTATGACTGGCTT	NA	False	NA	34	True	AATAAA	-23	NA	148533067	148642140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_148533145_148536713_148536890_148537478_148537588_148538214_148538448_148539008_148539210_148540441_148540577_148543083_148543360_148543440_148543550_148547243_148547431_148548148_148548278_148548759_148549005_148549403_148549620_148550347_148550554_148552706_148552830_148553444_148553535_148553823_148553917_148554678_148554814_148555028_148555159_148556370_148556622_148565321_148565409_148568011_148568180_148568766_148568880_148569082_148569246_148570505_148570599_148571232_148571380_148573932_148574076_148575791_148575955_148576077_148576224_148596227_148596304_148599282_148599423_148605748_148605850_148608915_148609032_148610180_148610259_148610454_148610563_148614938_148615065_148615134_148615267_148618318_148618435_148619364_148619483_148620967_148621217_148621818_148621920_148622319_148622417_148622732_148622832_148622919_148623043_148623184_148623368_148624437_148624573_148624741_148624917_148628875_148629012_148629966_148630115_148630854_148630978_148632060_148632144_148633824_148633898_148634247_148634323_148634544_148634681_148635415_148635482_148637168_148637250_148637487_148637569_148640723_148640830_148641301
transcript_68447.known	chr4	+	2773	25	FSM	ENSMUSG00000017264.17	ENSMUST00000173154.8	2773	25	0	0	0	0	multi-exon	TRUE	canonical	2	11	junction_23	124.10724948608	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAGAAGAAAGATGGTTCT	NA	False	NA	NA	False	ATTAAA	-11	NA	148642887	148666847	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148660606_148660682_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666218_148666292_148666740
transcript_68448.known	chr4	+	2816	25	FSM	ENSMUSG00000017264.17	ENSMUST00000097781.11	2816	25	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_15	122.740912483256	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGAAAGATGGTTCTTGG	NA	False	NA	NA	False	ATTAAA	-14	NA	148642911	148666850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657487_148657567_148657647_148657734_148657842_148660265_148660362_148660606_148660682_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666214_148666292_148666740
transcript_68452.known	chr4	+	2682	24	FSM	ENSMUSG00000017264.17	ENSMUST00000076022.7	2682	24	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_18	124.035058157659	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTTCTTGGTTGGTTGG	NA	False	NA	NA	False	ATTAAA	-22	NA	148642918	148666858	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666214_148666292_148666740
transcript_6846.known	chr10	+	2269	8	FSM	ENSMUSG00000019834.16	ENSMUST00000078314.14	2269	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.60356745147455	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGTGCACTGTGTATTC	1486	False	NA	NA	False	AATAAA	-22	NA	40446331	40480128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_40446518_40449618_40450099_40457293_40457412_40460850_40461383_40463497_40463626_40467779_40467890_40471251_40471352_40479513
transcript_68463.nnic	chr4	+	654	3	NNC	ENSMUSG00000017264.17	novel	2682	24	NA	NA	-13	-4009	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	284.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAACAAACAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	148642872	148644619	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_148643036_148644004_148644392_148644515
transcript_68464.nnic	chr4	+	673	3	NNC	ENSMUSG00000017264.17	novel	2682	24	NA	NA	-13	-4004	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	284.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAACAAAAAAAAAAAGCAC	NA	False	NA	NA	False	NA	NA	NA	148642872	148644624	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_148643036_148644004_148644410_148644519
transcript_68468.known	chr4	+	1338	7	FSM	ENSMUSG00000006442.11	ENSMUST00000006611.9	1338	7	0	0	0	0	multi-exon	FALSE	canonical	3	3072	junction_6	112.657297440808	255	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCATTTTTGTTCCTA	8716	False	NA	28	True	AATACA	-36	NA	148675959	148679076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_148676244_148676500_148676622_148676938_148677032_148677744_148677899_148678224_148678455_148678539_148678663_148678743
transcript_6847.known	chr10	+	2408	5	FSM	ENSMUSG00000063428.9	ENSMUST00000213442.2	2408	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	1.29903810567666	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTCTACTGTTCTTCCT	NA	False	NA	NA	False	CATAAA	-16	NA	40506041	40517564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_40506088_40507601_40507777_40508933_40509043_40513340_40513518_40515663
transcript_68475.known	chr4	+	738	5	FSM	ENSMUSG00000028979.18	ENSMUST00000105701.9	738	5	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_1	7.49583217528247	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGTGGCTGTGTGTCTCT	NA	False	NA	5	True	AATAAA	-15	NA	148687010	148688874	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_148687048_148687124_148687354_148687448_148687627_148688143_148688276_148688712
transcript_68479.known	chr4	-	2006	8	FSM	ENSMUSG00000041459.16	ENSMUST00000045180.14	2006	8	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_2	361.175800938647	798	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGATCGTGAGTTATTG	NA	False	NA	NA	False	NA	NA	NA	148711222	148700375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_148701302_148702022_148702163_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
transcript_6848.known	chr10	+	3000	5	FSM	ENSMUSG00000063428.9	ENSMUST00000019977.8	3000	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	1.78535710713571	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAGTGTGTGTGATCTCTT	NA	False	NA	NA	False	AATAAA	-16	NA	40506006	40525927	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_40506088_40507601_40507777_40508933_40509043_40513340_40513518_40523469
transcript_68480.known	chr4	-	741	6	FSM	ENSMUSG00000041459.16	ENSMUST00000190552.7	741	6	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_2	398.328206382626	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGGATTCATCACCTGTC	NA	False	NA	-2	True	AATAAA	-26	NA	148706447	148701172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_148701302_148702022_148702163_148703130_148703249_148703640_148703812_148705048_148705190_148706405
transcript_68481.known	chr4	-	1304	8	FSM	ENSMUSG00000041459.16	ENSMUST00000191450.7	1304	8	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	409.46231542732	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCAAGTCAAATGGATTCA	NA	False	NA	-11	True	AATAAA	-17	NA	148711215	148701181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_148701302_148702022_148702283_148703130_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
transcript_68482.known	chr4	-	1904	7	FSM	ENSMUSG00000041459.16	ENSMUST00000105699.8	1904	7	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_1	346.808024064547	525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAAGTCAAATGGATTC	NA	False	NA	-12	True	AATAAA	-16	NA	148711215	148701182	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_148702163_148703130_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
transcript_68483.known	chr4	-	370	2	FSM	ENSMUSG00000041459.16	ENSMUST00000190478.2	370	2	0	0	0	0	multi-exon	FALSE	canonical	3	1096	junction_1	0	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAGACTTCCGTGCCATCT	NA	False	NA	NA	False	NA	NA	NA	148711215	148709541	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_148709834_148711137
transcript_68484.nnic	chr4	-	577	3	Antisense	novelGene_ENSMUSG00000087273.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_2	0.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTCCTTGGCAAGTTCA	NA	False	NA	NA	False	AATAAA	-14	NA	148798575	148793595	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr4_-_148793910_148794253_148794445_148798503
transcript_68487.nnic	chr4	+	577	3	Intergenic	novelGene_93	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0.5	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTATTTTGATGGGTTTT	7470	False	NA	NA	False	ATTAAA	-32	NA	148958603	148960990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr4_+_148958780_148959400_148959695_148960883
transcript_68488.nnic	chr4	+	492	3	Intergenic	novelGene_94	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTATTTTGATGGGTTTT	7517	False	NA	NA	False	ATTAAA	-32	NA	148958650	148960990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr4_+_148958780_148959438_148959695_148960883
transcript_68491.known	chr4	-	562	2	FSM	ENSMUSG00000086606.2	ENSMUST00000123548.2	562	2	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGCTCGTTGTGGACAA	NA	False	NA	-4	True	AATAAA	-14	NA	149033371	149031948	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_149032363_149033223
transcript_68492.nnic	chr4	-	1535	11	Fusion	ENSMUSG00000086606.2_ENSMUSG00000028975.17	novel	2006	9	NA	NA	16	3	multi-exon	FALSE	canonical	3	45	junction_1	151.923796687682	31	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCTCGTTGTGGACAAAAC	NA	False	NA	-1	True	AATAAA	-17	NA	149184317	149031945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr4_-_149032363_149033223_149033365_149046004_149046252_149047898_149047991_149050678_149050777_149051980_149052084_149055006_149055093_149068493_149068623_149126177_149126263_149160476_149160525_149184228
transcript_68494.known	chr4	-	2006	9	FSM	ENSMUSG00000028975.17	ENSMUST00000103217.11	2006	9	0	0	0	0	multi-exon	FALSE	canonical	3	391	junction_6	18.1757909043871	273	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGGCTCTGACCTCGTC	NA	False	NA	-12	True	AATAAA	-20	NA	149184333	149044991	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_149046252_149047898_149047991_149050678_149050777_149051980_149052084_149055006_149055093_149068493_149068623_149126177_149126263_149160476_149160525_149184228
transcript_68497.known	chr4	+	2457	6	FSM	ENSMUSG00000028974.14	ENSMUST00000030816.4	2457	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	2.13541565040626	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGCTGCCTTTGTTTGTC	NA	False	NA	6	True	AATAAA	-16	NA	149188602	149205104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_149188844_149190608_149190771_149192225_149192369_149201864_149202055_149202228_149202381_149203535
transcript_68499.nnic	chr4	+	1203	6	NNC	ENSMUSG00000028974.14	novel	2457	6	NA	NA	-27	15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	13.7608139294157	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGAAGGGGGTGGGGGAA	NA	False	NA	NA	False	AAAACA	-7	NA	149188575	149203342	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_149188844_149190608_149190771_149192225_149192369_149201864_149202055_149202228_149202588_149203261
transcript_685.known	SIRV6	-	189	1	FSM	SIRV6C	SIRV618	189	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	680	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGGTCTAGCTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	2547	2358	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV6_-_2400_2500
transcript_68500.known	chr4	+	1835	5	FSM	ENSMUSG00000028974.14	ENSMUST00000103216.10	1835	5	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	2.34520787991171	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	149188602	149203327	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_149188844_149190608_149190771_149192225_149192369_149201864_149202055_149202228
transcript_68507.known	chr4	-	518	5	FSM	ENSMUSG00000073705.11	ENSMUST00000176124.8	518	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	158.113883008419	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGCCTTCATCTCATCTG	NA	False	NA	NA	False	GGGGCT	-22	NA	149222022	149213232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_149213386_149214609_149214677_149216095_149216130_149216715_149216890_149221932
transcript_68513.known	chr4	-	2218	13	FSM	ENSMUSG00000028961.16	ENSMUST00000084124.7	2218	13	0	0	0	0	multi-exon	FALSE	canonical	1	98	junction_7	73.9915066447194	2489	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTCTTTGTTTCTTCTCC	NA	False	NA	-8	True	AATAAA	-16	NA	149251164	149234447	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_149235221_149235309_149235433_149235569_149235670_149238320_149238455_149238622_149238754_149241063_149241254_149242417_149242553_149244515_149244586_149245291_149245411_149246085_149246152_149249506_149249687_149250463_149250540_149251043
transcript_68514.known	chr4	-	5626	27	FSM	ENSMUSG00000028960.21	ENSMUST00000103212.10	5626	27	0	0	0	0	multi-exon	TRUE	canonical	3	203	junction_22	27.7325828917206	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCCTGTGAGTCGTCTTT	NA	False	NA	-2	True	AATAAA	-23	NA	149511206	149412872	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_149414195_149414647_149414795_149415779_149415955_149419568_149419761_149421841_149421977_149427335_149427481_149428971_149429099_149432383_149432620_149435114_149435214_149435914_149436043_149437384_149437485_149439874_149440014_149442081_149442281_149443653_149443768_149444734_149444834_149444916_149445034_149445740_149445798_149449910_149449995_149452757_149452873_149455615_149455717_149457284_149457427_149465639_149465869_149468194_149468340_149469581_149469670_149471537_149471674_149483055_149483243_149510338
transcript_68519.known	chr4	-	621	2	FSM	ENSMUSG00000028960.21	ENSMUST00000173005.2	621	2	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_1	0	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTGTCTTGCTTCTGTC	NA	False	NA	NA	False	ATTAAA	-30	NA	149510673	149482956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_149483243_149510338
transcript_6852.known	chr10	-	3534	15	FSM	ENSMUSG00000038446.9	ENSMUST00000044166.9	3534	15	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_10	18.6027208894236	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCTGAGTTCATTGTG	NA	False	NA	-3	True	AATAAA	-19	NA	40759307	40707616	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_40709353_40710171_40710317_40712283_40712361_40717349_40717484_40717695_40717812_40719037_40719140_40720956_40721003_40723125_40723201_40723919_40724060_40725740_40725838_40726925_40727066_40728492_40728577_40733542_40733673_40743819_40743907_40758882
transcript_68523.known	chr4	-	619	4	FSM	ENSMUSG00000028996.10	ENSMUST00000030848.3	619	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	2.16024689946929	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGATTGGTTTTTTCTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	149539435	149534143	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_149534381_149537305_149537408_149537812_149537992_149539334
transcript_68525.known	chr4	-	1238	5	FSM	ENSMUSG00000028992.14	ENSMUST00000030845.13	1238	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	4.60298815988049	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTTAAATCAATTTTTCT	1652	False	NA	34	True	ACTAAA	-20	NA	149569655	149553015	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_149553669_149554096_149554240_149557741_149557926_149558884_149559053_149569565
transcript_68527.known	chr4	-	2657	4	FSM	ENSMUSG00000028992.14	ENSMUST00000119921.8	2657	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	4.98887651569859	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAGGACGACTACCCTCT	1648	False	NA	-7	True	AATAAA	-17	NA	149569659	149552028	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_149554240_149557741_149557926_149558884_149559053_149569565
transcript_68528.nic	chr4	-	295	3	ISM	ENSMUSG00000028992.14	ENSMUST00000030845.13	1238	5	-24	4897	-20	976	5prime_fragment	FALSE	canonical	3	49	junction_2	2	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCAAAGGCATTATCTCAC	1628	False	NA	NA	False	AATACA	-5	NA	149569679	149557912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_149557926_149558884_149559053_149569565
transcript_68530.nnic	chr4	+	1461	8	NIC	ENSMUSG00000028990.14	novel	1817	7	NA	NA	-163	0	combination_of_known_splicesites	FALSE	canonical	3	53	junction_1	51.1324809905103	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGTGTCTATGAAAATTCA	NA	False	NA	27	True	NA	NA	NA	149569522	149581125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_149569731_149570314_149570457_149571208_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536
transcript_68532.nic	chr4	+	1587	8	NIC	ENSMUSG00000028990.14	novel	1817	7	NA	NA	19	0	intron_retention	FALSE	canonical	3	32	junction_1	58.2405287035881	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGTGTCTATGAAAATTCA	NA	False	NA	27	True	NA	NA	NA	149569715	149581125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_149570050_149570314_149570457_149571208_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536
transcript_68534.known	chr4	+	1817	7	FSM	ENSMUSG00000028990.14	ENSMUST00000030842.8	1817	7	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_3	14.9517743280039	552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGTGTCTATGAAAATTCA	NA	False	NA	27	True	NA	NA	NA	149569750	149581125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_149570457_149571208_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536
transcript_68535.known	chr4	+	359	4	FSM	ENSMUSG00000028990.14	ENSMUST00000124413.8	359	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	85.3867020612044	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACGATTCGCTGAAGAAGAT	NA	False	NA	NA	False	AAAAAG	-28	NA	149569685	149572579	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_149569731_149570318_149570457_149571208_149571318_149572512
transcript_68536.nnic	chr4	+	761	3	NNC	ENSMUSG00000028988.14	novel	2674	5	NA	NA	1136	306	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	96.5	31	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGCTTTGCAATATTTAT	1372	False	NA	NA	False	NA	NA	NA	149630709	149649271	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_149630770_149630858_149630950_149648661
transcript_68537.nnic	chr4	+	908	2	NNC	ENSMUSG00000028988.14	novel	2674	5	NA	NA	17328	306	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0	39	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGCTTTGCAATATTTAT	9499	False	NA	NA	False	NA	NA	NA	149646901	149649271	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_149647200_149648661
transcript_68538.known	chr4	+	4459	18	FSM	ENSMUSG00000039953.14	ENSMUST00000105691.8	4459	18	0	0	0	0	multi-exon	FALSE	canonical	3	455	junction_9	51.7981175594149	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGAGTGGGGTCCATTCT	NA	False	NA	24	True	AATAAA	-19	NA	149670924	149733356	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_149671230_149698506_149698630_149711668_149711865_149713759_149713969_149716184_149716335_149716445_149716632_149719127_149719377_149719690_149719813_149722689_149722853_149726114_149726172_149727651_149727810_149728037_149728187_149728428_149728656_149729326_149729498_149729778_149729925_149730697_149730834_149731222_149731408_149731829
transcript_6854.nic	chr10	-	588	5	ISM	ENSMUSG00000038446.9	ENSMUST00000215051.2	2925	8	-41	5866	7	5345	5prime_fragment	FALSE	canonical	3	197	junction_1	4.32290411644765	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGGAAAAAGTTCAAAGAAA	NA	False	NA	6	True	AAGAAA	-9	NA	40759129	40727025	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_40727066_40728492_40728577_40733542_40733673_40743819_40743907_40758882
transcript_68540.known	chr4	-	4921	24	FSM	ENSMUSG00000039936.19	ENSMUST00000105690.9	4921	24	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_23	6.4283163750526	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTCTTGGCTCAAATAACAA	NA	False	NA	0	True	AATAAA	-20	NA	149783165	149733624	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_149735235_149736221_149736355_149736683_149736830_149737067_149737192_149737767_149737936_149738263_149738343_149738479_149738593_149738681_149738861_149738974_149739075_149739272_149739417_149739583_149739715_149739792_149739961_149740037_149740089_149740837_149740969_149741060_149741158_149741702_149741925_149742838_149742929_149743168_149743319_149743427_149743608_149744149_149744380_149744458_149744688_149747600_149747774_149758532_149758652_149783011
transcript_68542.known	chr4	-	824	3	FSM	ENSMUSG00000039936.19	ENSMUST00000137430.8	824	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTTTTTTCATTCTTTCT	NA	False	NA	NA	False	AATAAA	-11	NA	149760550	149757895	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_149758419_149758532_149758652_149760368
transcript_68543.nic	chr4	-	776	3	NIC	ENSMUSG00000039936.19	novel	824	3	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_2	2	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTTTTTTCATTCTTTCT	NA	False	NA	NA	False	AATAAA	-11	NA	149783145	149757895	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_149758419_149758532_149758652_149783011
transcript_68546.nnic	chr4	-	1490	8	NNC	ENSMUSG00000028982.10	novel	1887	7	NA	NA	-3144	-436	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	206.964257981016	128	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCGTGCTGGGCTGTGTTC	NA	False	NA	-3	True	ATTAAA	-19	NA	149861878	149828928	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_149829395_149833505_149833787_149836860_149836928_149838255_149838357_149840531_149840610_149846823_149847004_149860511_149860612_149861661
transcript_68548.known	chr4	-	1887	7	FSM	ENSMUSG00000028982.10	ENSMUST00000105686.3	1887	7	0	0	0	0	multi-exon	FALSE	canonical	3	394	junction_5	32.4623713791146	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATATTTTCCTGCATTT	NA	False	NA	NA	False	AATAAA	-20	NA	149858734	149828492	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_149829395_149833505_149833787_149836860_149836928_149838255_149838357_149840531_149840610_149846823_149847004_149858456
transcript_6855.known	chr10	-	1643	3	FSM	ENSMUSG00000038446.9	ENSMUST00000215441.2	1643	3	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_1	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCAAAAAGGAAAAAAGGAGT	NA	False	NA	NA	False	NA	NA	NA	40759136	40732370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_40733673_40743819_40743907_40758882
transcript_68550.nnic	chr4	-	1057	6	NNC	ENSMUSG00000028982.10	novel	1887	7	NA	NA	14610	-436	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	188.488089809409	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCGTGCTGGGCTGTGTTC	9955	False	NA	-3	True	ATTAAA	-19	NA	149844124	149828928	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_149829395_149833505_149833787_149836860_149836928_149838255_149838357_149840531_149840610_149844060
transcript_68555.known	chr4	-	3092	3	FSM	ENSMUSG00000039911.14	ENSMUST00000038562.9	3092	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	6.5	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCGAGTCCTTTCGTGC	NA	False	NA	3	True	AATAAA	-24	NA	150039500	149980739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_149982799_149990872_149991715_150039309
transcript_6856.known	chr10	+	2609	9	FSM	ENSMUSG00000019831.15	ENSMUST00000019975.14	2609	9	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	81.4024531264261	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTGTCGCTCTTCGAG	NA	False	NA	17	True	AATAAA	-19	NA	40759470	40814565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_40759606_40796243_40796405_40802479_40802615_40806626_40806781_40807911_40808030_40809108_40809282_40810472_40810653_40812105_40812735_40813641
transcript_68561.known	chr4	+	4900	4	FSM	ENSMUSG00000047875.7	ENSMUST00000094451.4	4900	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	1.88561808316413	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAGTGTGATGTTAACTC	NA	False	NA	NA	False	ATTAAA	-18	NA	150171821	150190384	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_150172594_150183214_150183429_150186036_150186235_150186668
transcript_68567.nic	chr4	+	1478	6	ISM	ENSMUSG00000062064.7	ENSMUST00000059893.8	1578	12	9394	-542	538	542	3prime_fragment	FALSE	canonical	3	15	junction_5	2.57681974534502	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTATTTGGGCTCCGGTTC	1900	False	NA	NA	False	NA	NA	NA	150242822	150253481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_150243123_150244475_150244587_150247654_150247757_150249565_150249642_150250811_150250940_150252720
transcript_68568.known	chr4	-	1460	7	FSM	ENSMUSG00000028972.12	ENSMUST00000105683.9	1460	7	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	3.44802681092953	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTTACTATTCTTTT	NA	False	NA	2	True	AATAAA	-28	NA	150282927	150271471	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_150271966_150273577_150273702_150276931_150277090_150278164_150278235_150280512_150280606_150281774_150281924_150282555
transcript_68572.known	chr4	+	2027	12	FSM	ENSMUSG00000063524.14	ENSMUST00000080926.13	2027	12	0	0	0	0	multi-exon	FALSE	canonical	3	2891	junction_9	3966.2265098293	10522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGGCATCTCATTTGTG	NA	False	NA	5	True	AATAAA	-22	NA	150321408	150333336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
transcript_6858.known	chr10	-	3282	23	FSM	ENSMUSG00000038417.5	ENSMUST00000043814.5	3282	23	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_19	28.6394298502739	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGGTTTTGCTTCTGACT	NA	False	NA	-25	True	AATAAA	-17	NA	41179256	41064167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_41064696_41096894_41096982_41102917_41103001_41104102_41104299_41106002_41106087_41108102_41108251_41109547_41109607_41116500_41116640_41127712_41127880_41129635_41129785_41130839_41130886_41132416_41132534_41134010_41134145_41139064_41139163_41139880_41140044_41141381_41141483_41143682_41143812_41146294_41146444_41148953_41149005_41153353_41153511_41161285_41161410_41161596_41161696_41178982
transcript_686.known	SIRV6	+	1969	1	FSM	SIRV6A	SIRV603	1969	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2343	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGGAAGATTTCGACCGAA	NA	False	NA	NA	False	ATTAAA	-26	NA	8999	10968	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV6_+_9000_11000
transcript_6860.nic	chr10	-	959	7	ISM	ENSMUSG00000038417.5	ENSMUST00000043814.5	3282	23	-17	79556	-17	-79556	5prime_fragment	FALSE	canonical	3	326	junction_3	22.5289936649544	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCTATTGTATATCATTC	NA	False	NA	NA	False	ATTAAA	-18	NA	41179273	41143723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_41143812_41146294_41146444_41148953_41149005_41153353_41153511_41161285_41161410_41161596_41161696_41178982
transcript_6861.nnic	chr10	-	1141	7	NNC	ENSMUSG00000038417.5	novel	3282	23	NA	NA	-17	-79556	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	135.022220393534	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCTATTGTATATCATTC	NA	False	NA	NA	False	ATTAAA	-18	NA	41179273	41143723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_41143994_41146294_41146444_41148953_41149005_41153353_41153511_41161285_41161410_41161596_41161696_41178982
transcript_68633.known	chr4	+	562	2	FSM	ENSMUSG00000063524.14	ENSMUST00000148605.2	562	2	0	0	0	0	multi-exon	FALSE	canonical	3	16292	junction_1	0	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGCCCAACCTGTGCTA	NA	False	NA	NA	False	NA	NA	NA	150321699	150324393	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_150321798_150323929
transcript_68634.known	chr4	+	1878	3	FSM	ENSMUSG00000063524.14	ENSMUST00000130632.8	1878	3	0	0	0	0	multi-exon	FALSE	canonical	3	15633	junction_2	329.5	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAATCATTT	NA	False	NA	NA	False	NA	NA	NA	150321696	150327184	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_150321798_150323929_150324024_150325501
transcript_68635.known	chr4	+	345	4	FSM	ENSMUSG00000063524.14	ENSMUST00000141931.2	345	4	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	7391.45472074942	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATCAATAAAACTATTGCG	NA	False	NA	NA	False	NA	NA	NA	150322156	150326599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_150322291_150323929_150324024_150325501_150325598_150326578
transcript_68636.nnic	chr4	-	479	3	Intergenic	novelGene_95	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCACTTGTTCCTCCTCTC	2046	False	NA	NA	False	AATAAA	-17	NA	150913239	150909646	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr4_-_150909862_150912470_150912642_150913146
transcript_68637.known	chr4	+	395	1	FSM	ENSMUSG00000084314.2	ENSMUST00000121072.2	395	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	781	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATGTAAAGCATAAATAAAAA	1836	False	NA	NA	False	AAAACA	-35	NA	150931569	150931964	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_150931600_150932000
transcript_68638.known	chr4	+	3043	4	FSM	ENSMUSG00000028967.11	ENSMUST00000030811.2	3043	4	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_2	19.3275853524323	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAATGTGTCTTGTCTAAA	3781	False	NA	NA	False	AATAAA	-28	NA	150939529	150953344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_150939729_150949531_150949727_150949820_150949898_150950772
transcript_68648.known	chr4	-	919	7	FSM	ENSMUSG00000028964.15	ENSMUST00000105673.8	919	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	2143.40985477709	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCAGTAGTATGTGAAGCA	NA	False	NA	-107	True	NA	NA	NA	150994108	150981695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150993847
transcript_68650.known	chr4	-	882	7	FSM	ENSMUSG00000028964.15	ENSMUST00000105675.8	882	7	0	0	0	0	multi-exon	FALSE	canonical	3	295	junction_6	2038.03331806807	11085	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGTGTCTGGGGTCTTT	5729	False	NA	-1	True	AATAAA	-26	NA	150998894	150981589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150998776
transcript_68664.known	chr4	-	908	7	FSM	ENSMUSG00000028964.15	ENSMUST00000030805.14	908	7	0	0	0	0	multi-exon	FALSE	canonical	3	5402	junction_3	199.85446093484	54869	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGTGTCTGGGGTCTTT	NA	False	NA	-1	True	AATAAA	-26	NA	150994383	150981589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150994239
transcript_68666.known	chr4	-	2178	6	FSM	ENSMUSG00000014592.22	ENSMUST00000153938.3	2178	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	486.741574143816	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGAGTGGGCCACTAGTGT	NA	False	NA	NA	False	NA	NA	NA	151946161	151864909	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_151866589_151874864_151875011_151876875_151876960_151914874_151914994_151920270_151920341_151946081
transcript_6867.nnic	chr10	-	719	4	Intergenic	novelGene_8	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTACTGTGTGTGTTGTC	NA	False	NA	NA	False	AAAACA	-20	NA	41291526	41282038	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr10_-_41282105_41282632_41282829_41284326_41284449_41291191
transcript_68675.known	chr4	-	2198	4	FSM	ENSMUSG00000014592.22	ENSMUST00000185034.8	2198	4	0	0	0	0	multi-exon	FALSE	canonical	3	969	junction_2	33.2565782966318	995	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTACTTGCTTTTTTAG	NA	False	NA	NA	False	AATACA	-12	NA	151946161	151875030	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_151876960_151914874_151914994_151920270_151920341_151946081
transcript_68678.known	chr4	-	506	3	FSM	ENSMUSG00000014592.22	ENSMUST00000135780.2	506	3	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_2	493.5	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTTTCATCTTTTTAAAA	NA	False	NA	-23	True	AATAAA	-10	NA	151946195	151876686	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_151876960_151914874_151914994_151946081
transcript_68680.known	chr4	-	2120	5	FSM	ENSMUSG00000028955.4	ENSMUST00000030797.4	2120	5	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_4	30.2685893295343	702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCGTGTTTCTTGGAGTG	NA	False	NA	3	True	AATAAA	-22	NA	151142410	151131756	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_151133504_151134451_151134504_151135373_151135533_151140618_151140701_151142330
transcript_68682.known	chr4	-	822	3	FSM	ENSMUSG00000028955.4	ENSMUST00000155446.2	822	3	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_2	38.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTAAATGCTAAGAAATCCC	NA	False	NA	NA	False	NA	NA	NA	151142403	151134865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_151135533_151140618_151140701_151142330
transcript_68689.known	chr4	+	3151	16	FSM	ENSMUSG00000039768.17	ENSMUST00000062904.11	3151	16	0	0	0	0	multi-exon	FALSE	canonical	3	755	junction_7	69.5258864660415	1226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTCTGGCTATGTGGCTT	9070	False	NA	NA	False	NA	NA	NA	152018147	152066594	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_152018282_152034850_152034981_152037298_152037373_152041559_152041662_152052955_152053085_152054302_152054426_152055313_152055388_152057936_152058127_152058216_152058303_152058653_152058771_152061406_152061563_152062455_152062526_152063728_152063787_152063900_152064044_152064374_152064505_152065159
transcript_687.known	SIRV6	+	531	4	FSM	SIRV6A	SIRV616	531	4	0	0	0	0	multi-exon	FALSE	canonical	3	918	junction_2	7304.14215816386	8401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTTGAAAAAGTAATAGTGC	NA	False	NA	NA	False	NA	NA	NA	2285	10788	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV6_+_2621_2740_2815_3106_3165_10724
transcript_68708.nic	chr4	+	608	5	ISM	ENSMUSG00000039768.17	ENSMUST00000139555.8	3841	9	-90	8068	-50	0	5prime_fragment	FALSE	canonical	3	795	junction_4	70.2424373153438	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCCATTGAGGTAAAGCGC	9020	False	NA	NA	False	AATAAA	-14	NA	152018097	152053073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_152018282_152034850_152034981_152037298_152037373_152041559_152041662_152052955
transcript_68709.known	chr4	-	1124	4	FSM	ENSMUSG00000039759.11	ENSMUST00000036680.8	1124	4	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_2	10.8730042868667	886	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCAGGCTGTCACTCGGTT	NA	False	NA	-3	True	AATAAA	-16	NA	152073454	152067095	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_152067810_152068091_152068194_152070125_152070319_152073339
transcript_68710.known	chr4	-	501	2	FSM	ENSMUSG00000039759.11	ENSMUST00000146471.2	501	2	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCCCATCTCCAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	152073437	152069915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_152070319_152073339
transcript_68711.known	chr4	-	2218	11	FSM	ENSMUSG00000028952.13	ENSMUST00000066715.11	2218	11	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_10	11.2782977438973	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCAGTGTCTGTTCCTTGG	8679	False	NA	-1	True	AATAAA	-18	NA	152112118	152104230	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_152104578_152104646_152104736_152105000_152105166_152105235_152105373_152105745_152105901_152105998_152106086_152106483_152106577_152107152_152107265_152110234_152110477_152110844_152111517_152111999
transcript_68712.nic	chr4	-	2212	11	NIC	ENSMUSG00000028952.13	novel	2218	11	NA	NA	-8	0	intron_retention	FALSE	canonical	2	3	junction_10	15.9715371833772	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTCAGTGTCTGTTCCTT	8661	False	NA	-3	True	AATAAA	-16	NA	152112136	152104232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_-_152104578_152104646_152104736_152105000_152105166_152105235_152105373_152105745_152105901_152105998_152106086_152106483_152106577_152107152_152107265_152110234_152110477_152110844_152111517_152112021
transcript_68722.known	chr4	+	1603	7	FSM	ENSMUSG00000024793.15	ENSMUST00000035275.8	1603	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	3.13138237134266	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTTGGTATTTCAGTGG	782	False	NA	NA	False	ATTAAA	-17	NA	152200799	152204568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_152201181_152201387_152201523_152201834_152202000_152202857_152202957_152203146_152203185_152203616_152203801_152203967
transcript_68723.known	chr4	-	3406	16	FSM	ENSMUSG00000028943.19	ENSMUST00000030785.15	3406	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	5.0570083382701	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGGCTCTCATTCACTC	NA	False	NA	NA	False	ATTAAA	-14	NA	152236664	152204787	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_152205723_152208073_152208086_152208170_152208251_152212525_152212790_152212864_152213011_152214068_152214096_152215225_152215419_152215508_152215752_152217380_152217414_152218617_152218899_152219929_152220132_152222886_152223019_152223192_152223376_152223495_152223683_152233315_152233510_152236370
transcript_68727.known	chr4	+	1457	9	FSM	ENSMUSG00000028937.15	ENSMUST00000075363.10	1457	9	0	0	0	0	multi-exon	FALSE	canonical	3	360	junction_1	55.2466062306093	1265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGCCTAGGTGGTCATTT	NA	False	NA	17	True	AATAAA	-22	NA	152262590	152356309	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_152262798_152291220_152291339_152302192_152302350_152307527_152307620_152314231_152314347_152322136_152322224_152337605_152337723_152345302_152345488_152355930
transcript_6873.known	chr10	+	2844	7	FSM	ENSMUSG00000019826.12	ENSMUST00000080771.10	2844	7	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_6	14.3807355707403	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGATACTTGATCTTTAT	NA	False	NA	4	True	AATAAA	-16	NA	41326378	41341570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_41326527_41327084_41328065_41331023_41331192_41331668_41331753_41332527_41332612_41338274_41338357_41340272
transcript_68730.known	chr4	+	1425	9	FSM	ENSMUSG00000028937.15	ENSMUST00000030779.10	1425	9	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	152.008172066504	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCATGAAGCCTAGGTGGT	NA	False	NA	12	True	AATAAA	-17	NA	152270662	152356304	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_152270843_152291220_152291339_152302192_152302350_152307527_152307620_152314231_152314347_152322136_152322224_152337605_152337723_152345302_152345488_152355930
transcript_68743.known	chr4	-	2466	17	FSM	ENSMUSG00000058498.13	ENSMUST00000076183.12	2466	17	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_8	8.32071962032131	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGAGTACAGTGATCACT	NA	False	NA	NA	False	AATAAA	-18	NA	152403065	152391475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_152392074_152393294_152393361_152395840_152395959_152396228_152396281_152396527_152396714_152396846_152397034_152397643_152397742_152397820_152397890_152398335_152398405_152398492_152398566_152399498_152399546_152399848_152399975_152400059_152400136_152400207_152400290_152400375_152400521_152402117_152402251_152402724
transcript_68762.known	chr4	+	369	3	FSM	ENSMUSG00000028936.16	ENSMUST00000156445.2	369	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	2900	2258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAACCGGTGGTTTATCC	NA	False	NA	10	True	AATAAA	-9	NA	152412013	152416931	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_152412043_152414460_152414586_152416716
transcript_68763.known	chr4	+	2048	4	FSM	ENSMUSG00000028936.16	ENSMUST00000188151.2	2048	4	0	0	0	0	multi-exon	FALSE	canonical	3	4243	junction_1	691.49805173663	111506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTCACTGTGCAAGGCTT	NA	False	NA	28	True	ATTAAA	-18	NA	152410325	152418527	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_152410353_152411937_152412043_152414460_152414586_152416736
transcript_68764.known	chr4	+	576	4	FSM	ENSMUSG00000028936.16	ENSMUST00000150485.2	576	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2633.7473092324	532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAACCGGTGGTTTATC	NA	False	NA	9	True	AATAAA	-8	NA	152411936	152416930	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_152412043_152413716_152413871_152414463_152414586_152416736
transcript_68765.known	chr4	+	280	3	FSM	ENSMUSG00000005045.17	ENSMUST00000136134.2	280	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAAGAAGAAACTGAAGG	NA	False	NA	NA	False	NA	NA	NA	152426051	152438083	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_152426118_152432392_152432521_152437997
transcript_68767.known	chr4	-	3961	16	FSM	ENSMUSG00000028931.13	ENSMUST00000160884.9	3961	16	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_13	3.63684845252956	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTTCTGATCTCTCCTTTC	NA	False	NA	-4	True	AATAAA	-22	NA	152562367	152475200	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_152477582_152478198_152478288_152478746_152478868_152479385_152479481_152479581_152479703_152481212_152481299_152485404_152485492_152486381_152486426_152487492_152487538_152489056_152489102_152491583_152491664_152496441_152496480_152497273_152497318_152519238_152519281_152520261_152520395_152561857
transcript_68768.known	chr4	-	3597	15	FSM	ENSMUSG00000028931.13	ENSMUST00000030768.10	3597	15	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_13	3.43748840443313	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTTTCTGATCTCTCCTTT	NA	False	NA	-5	True	AATAAA	-21	NA	152562046	152475201	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_152477582_152478198_152478288_152478746_152478868_152479385_152479481_152479581_152479703_152481212_152481299_152485404_152485492_152486381_152486426_152487492_152487538_152489056_152489102_152491583_152491664_152496441_152496480_152497273_152497318_152520261_152520395_152561857
transcript_68769.known	chr4	-	3574	15	FSM	ENSMUSG00000028931.13	ENSMUST00000159840.8	3574	15	0	0	0	0	multi-exon	TRUE	canonical	1	4	junction_13	3.78773530958939	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGATCTCTCCTTTCCT	NA	False	NA	-2	True	AATAAA	-24	NA	152533297	152475198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_152477582_152478198_152478288_152478746_152478868_152479385_152479481_152479581_152479703_152481212_152481299_152485404_152485492_152486381_152486426_152487492_152487538_152489056_152489102_152491583_152491664_152496441_152496480_152497273_152497318_152520261_152520395_152533134
transcript_68771.known	chr4	+	5027	30	FSM	ENSMUSG00000039577.18	ENSMUST00000081393.10	5027	30	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	9.48470199522204	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTCTCTTCTGATGTTTT	NA	False	NA	NA	False	AATGAA	-19	NA	152562598	152647640	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_152562897_152568816_152568998_152573198_152573352_152581105_152581279_152582633_152582699_152583388_152583545_152587330_152587462_152590817_152591000_152591813_152591941_152602549_152602733_152608698_152608826_152620366_152620429_152621639_152621757_152622231_152622381_152622476_152622669_152623279_152623468_152628755_152628917_152631402_152631584_152636260_152636387_152638978_152639185_152639929_152640157_152640675_152640863_152641448_152641533_152643784_152643942_152644134_152644221_152644720_152644807_152645634_152645807_152646030_152646211_152646462_152646607_152647094
transcript_68773.known	chr4	-	1371	3	FSM	ENSMUSG00000086272.2	ENSMUST00000141582.2	1371	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAAAGGCTTTGGGTTTG	7727	False	NA	NA	False	NA	NA	NA	154034960	154032089	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_154033295_154034549_154034644_154034888
transcript_68778.known	chr4	+	940	4	FSM	ENSMUSG00000047613.11	ENSMUST00000147826.2	940	4	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	332.870345129551	2173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGATGAATTCTGCTGGAA	NA	False	NA	NA	False	NA	NA	NA	154041722	154046260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_154041780_154044212_154044320_154044987_154045450_154045946
transcript_68785.known	chr4	+	541	3	FSM	ENSMUSG00000047613.11	ENSMUST00000141493.8	541	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	388	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATCCTTCCATGAGCAGA	NA	False	NA	NA	False	NA	NA	NA	154041722	154045968	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_154041780_154044987_154045450_154045946
transcript_68787.known	chr4	-	1634	8	FSM	ENSMUSG00000029027.10	ENSMUST00000133607.9	1634	8	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_4	14.5588180726826	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGATGGCTTTATCTGTGC	NA	False	NA	NA	False	TTTAAA	-35	NA	154059508	154049360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_154050071_154053549_154053651_154054397_154054569_154056037_154056118_154057064_154057136_154057236_154057426_154059025_154059153_154059323
transcript_68790.known	chr4	-	2093	7	FSM	ENSMUSG00000029027.10	ENSMUST00000030893.3	2093	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	5.79271573232759	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACATGTCAAAATTTTTTGA	NA	False	NA	NA	False	AATAAA	-15	NA	154059583	154048905	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_154050071_154053549_154053651_154054397_154054569_154056037_154056118_154057236_154057426_154059025_154059153_154059323
transcript_68791.known	chr4	+	5151	22	FSM	ENSMUSG00000039523.17	ENSMUST00000047497.15	5151	22	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_14	10.5677814386534	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCATGTCACTTTTATTA	NA	False	NA	13	True	AGTAAA	-10	NA	154059650	154093189	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_154060055_154063400_154063553_154065627_154065802_154066090_154066230_154067520_154067584_154068045_154068132_154069355_154069525_154069771_154069931_154071215_154071432_154072862_154073058_154073580_154073749_154074231_154074406_154077274_154077452_154077926_154078140_154078861_154078970_154079891_154079929_154080728_154080796_154081317_154081427_154086721_154086861_154086984_154087053_154090622_154090714_154091146
transcript_68793.known	chr4	+	3468	7	FSM	ENSMUSG00000029028.15	ENSMUST00000169622.8	3468	7	0	0	0	0	multi-exon	FALSE	canonical	3	350	junction_6	37.5972812255827	278	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGCATCAGCAGCCTTA	NA	False	NA	16	True	AATAAA	-18	NA	154096187	154105970	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_154096894_154100112_154100566_154101874_154101992_154102826_154102943_154103386_154103490_154103850_154103941_154104087
transcript_68797.known	chr4	-	3373	5	FSM	ENSMUSG00000078350.12	ENSMUST00000143047.8	3373	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	17.8378109643532	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCCTGCGTTCAACCTGA	NA	False	NA	NA	False	AATAAA	-14	NA	154110423	154105044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_154107911_154108144_154108349_154108523_154108651_154109960_154110079_154110365
transcript_688.known	SIRV6	+	377	4	FSM	SIRV6A	SIRV608	377	4	0	0	0	0	multi-exon	FALSE	canonical	3	18415	junction_1	2118.18355095954	11735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTTTATTAGCCTGCCTA	NA	False	NA	NA	False	NA	NA	NA	3023	11270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV6_+_3165_10724_10819_11031_11109_11205
transcript_6880.known	chr10	+	2476	2	FSM	ENSMUSG00000019826.12	ENSMUST00000216656.2	2476	2	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	0	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCTTTAGACTCTTCAGT	NA	False	NA	NA	False	AATAAA	-16	NA	41326430	41329464	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_41326527_41327084
transcript_68801.known	chr4	-	2568	4	FSM	ENSMUSG00000078350.12	ENSMUST00000125533.9	2568	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	12.1928941054479	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGTTTCAAAAATCTCAATG	NA	False	NA	NA	False	NA	NA	NA	154110687	154105912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_154107911_154108144_154108275_154109960_154110079_154110365
transcript_68803.known	chr4	-	477	4	FSM	ENSMUSG00000078350.12	ENSMUST00000130175.8	477	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	16.8588914885357	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGGGGATTCCCTCCCA	NA	False	NA	-22	True	AATAAA	-17	NA	154110324	154107766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_154107911_154108144_154108349_154109960_154110079_154110313
transcript_68804.known	chr4	-	707	4	FSM	ENSMUSG00000078350.12	ENSMUST00000146054.8	707	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	2.35702260395516	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCTGGGGATTCCCTCCC	NA	False	NA	-23	True	AATAAA	-16	NA	154110607	154107767	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_154107911_154108144_154108349_154109960_154110079_154110365
transcript_68805.known	chr4	-	4752	12	FSM	ENSMUSG00000029026.18	ENSMUST00000133533.8	4752	12	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_11	6.38697020736374	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTTGACTATTGTAACTAA	NA	False	NA	NA	False	AATAAA	-16	NA	154181630	154140709	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_154143784_154145044_154145139_154145818_154145958_154146409_154146559_154146968_154147097_154148341_154148431_154148769_154148913_154149094_154149205_154151466_154151583_154152033_154152221_154165785_154166029_154181350
transcript_68806.known	chr4	+	1598	12	FSM	ENSMUSG00000029029.15	ENSMUST00000030895.12	1598	12	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	6.78354840224641	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAACAGTGGTGGTTGTTT	NA	False	NA	25	True	TATAAA	-30	NA	154226828	154241273	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_154226971_154229699_154229853_154230947_154231065_154233166_154233240_154236084_154236189_154236794_154236882_154237017_154237153_154237249_154237328_154238991_154239098_154239697_154239824_154240557_154240750_154240988
transcript_68810.nnic	chr4	+	1445	11	NIC	ENSMUSG00000029029.15	novel	1598	12	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_1	18.1317401260883	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAACAGTGGTGGTTGTTT	NA	False	NA	25	True	TATAAA	-30	NA	154226828	154241273	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_154226971_154230947_154231065_154233166_154233240_154236084_154236189_154236794_154236882_154237017_154237153_154237249_154237328_154238991_154239098_154239697_154239824_154240557_154240750_154240988
transcript_68812.known	chr4	-	373	3	FSM	ENSMUSG00000029030.15	ENSMUST00000136374.2	373	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	327	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCGCCCCCTCCTCATCGA	NA	False	NA	NA	False	NA	NA	NA	154244623	154242929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_154243023_154243725_154243880_154244497
transcript_68814.known	chr4	-	2860	15	FSM	ENSMUSG00000029032.13	ENSMUST00000030898.12	2860	15	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_12	5.46976849116476	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAACAGGTAGGTGGAGAC	NA	False	NA	34	True	AATATA	-4	NA	154384511	154362942	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_154363553_154364154_154364257_154364692_154364767_154365287_154365477_154365774_154365927_154366280_154366374_154366462_154366538_154366972_154367103_154367216_154367370_154369441_154369603_154370070_154370128_154371375_154371546_154372424_154372471_154375392_154376011_154384281
transcript_68819.known	chr4	+	387	2	FSM	ENSMUSG00000084987.2	ENSMUST00000144347.2	387	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGAAGATTTATCCCCTGG	2926	False	NA	NA	False	NA	NA	NA	154685653	154688659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_154685865_154688483
transcript_68822.known	chr4	-	3414	2	FSM	ENSMUSG00000086810.2	ENSMUST00000138077.2	3414	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAACTCAAATGC	NA	False	NA	-22	True	NA	NA	NA	154739775	154730210	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_154733095_154739245
transcript_68826.known	chr4	-	883	7	FSM	ENSMUSG00000029059.10	ENSMUST00000030935.10	883	7	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_6	8.17856276425687	595	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCGTCCTTCCCACAGCA	NA	False	NA	-6	True	ATTAAA	-45	NA	154983567	154980855	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_154981055_154981496_154981616_154981805_154981882_154981962_154982027_154982584_154982637_154982932_154983138_154983399
transcript_6883.known	chr10	+	3563	24	FSM	ENSMUSG00000019823.18	ENSMUST00000019967.16	3563	24	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_2	27.5095446574272	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGTTTATGCTCTGTGCT	9093	False	NA	29	True	AATAAA	-18	NA	41352309	41363026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_41352537_41354005_41354311_41354423_41354632_41354958_41355064_41355390_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
transcript_68838.known	chr4	+	2508	19	FSM	ENSMUSG00000029056.14	ENSMUST00000030931.11	2508	19	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_8	27.1993100856585	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAATAATCTTTTATATAT	NA	False	NA	NA	False	NA	NA	NA	155048579	155065328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155048727_155053586_155053670_155054029_155054245_155054450_155054635_155054903_155054997_155055330_155055485_155055829_155056012_155056605_155056688_155056925_155057027_155059086_155059243_155060718_155060832_155061039_155061128_155061659_155061812_155062607_155062664_155062849_155062900_155063377_155063483_155063948_155064050_155064182_155064252_155064951
transcript_68843.nic	chr4	+	1111	6	ISM	ENSMUSG00000029056.14	ENSMUST00000030931.11	2508	19	-9	9618	-9	-7901	5prime_fragment	FALSE	canonical	3	141	junction_2	8.21218606705913	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAGGATATTTGTTTTTTC	NA	False	NA	NA	False	AATACA	-15	NA	155048570	155055710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_155048727_155053586_155053670_155054029_155054245_155054450_155054635_155054903_155054997_155055330
transcript_68844.nnic	chr4	+	436	2	NNC	ENSMUSG00000029056.14	novel	2508	19	NA	NA	-9	-13849	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	0	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGTGTTCCAGCTTTAT	NA	False	NA	NA	False	AGTAAA	-17	NA	155048570	155049762	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_155048727_155049482
transcript_68846.known	chr4	+	1688	6	FSM	ENSMUSG00000029047.14	ENSMUST00000103180.4	1688	6	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_5	7.62627038597505	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGAGCCGGGCGTGGTGGC	NA	False	NA	NA	False	TTTAAA	-9	NA	155151472	155156890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155151632_155152279_155152361_155153119_155153527_155154843_155155020_155155097_155155234_155156161
transcript_68850.known	chr4	+	651	3	FSM	ENSMUSG00000029047.14	ENSMUST00000134341.2	651	3	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	1.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGCATACTTGGGGACCC	NA	False	NA	NA	False	NA	NA	NA	155151515	155153573	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155151632_155152279_155152361_155153119
transcript_68851.known	chr4	+	491	3	FSM	ENSMUSG00000029047.14	ENSMUST00000123395.8	491	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	48	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCAGGGGCACGGCGCTGG	NA	False	NA	NA	False	NA	NA	NA	155151510	155153338	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155151702_155152279_155152361_155153119
transcript_68855.known	chr4	-	1803	8	FSM	ENSMUSG00000029048.4	ENSMUST00000149796.2	1803	8	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_7	582.015218259552	683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTCGTCTACACGAGTC	NA	False	NA	-13	True	ATTAAA	-22	NA	155170828	155158566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155167565_155167775_155170661
transcript_68872.known	chr4	-	1596	7	FSM	ENSMUSG00000029048.4	ENSMUST00000030914.4	1596	7	0	0	0	0	multi-exon	FALSE	canonical	3	1097	junction_6	206.502959354635	2112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTCGTCTACACGAGTC	NA	False	NA	-13	True	ATTAAA	-22	NA	155170830	155158566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155170661
transcript_68875.known	chr4	+	1659	14	FSM	ENSMUSG00000029049.15	ENSMUST00000030915.11	1659	14	0	0	0	0	multi-exon	TRUE	canonical	3	16	junction_9	6.41927570616156	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGCACCTTTTGTGGG	NA	False	NA	17	True	AATAAA	-18	NA	155171033	155229962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155171139_155171877_155171950_155173942_155174042_155175339_155175451_155176725_155176817_155177518_155177607_155185722_155185820_155186546_155186658_155195384_155195509_155195873_155196047_155213135_155213258_155213339_155213423_155226858_155226903_155229623
transcript_68889.nic	chr4	+	612	2	ISM	ENSMUSG00000029049.15	ENSMUST00000155775.8	389	5	-105	5261	-93	-5261	5prime_fragment	FALSE	canonical	3	34	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGGTAAAC	NA	False	NA	NA	False	NA	NA	NA	155170940	155172291	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_155171139_155171877
transcript_6889.known	chr10	-	1602	10	FSM	ENSMUSG00000019822.13	ENSMUST00000019965.13	1602	10	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_9	17.8020667408847	375	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCTCTACCTTGTTCCTT	NA	False	NA	0	True	AATAAA	-20	NA	41366336	41363167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_41363579_41363667_41363822_41363988_41364094_41364172_41364306_41364428_41364512_41364729_41364820_41364926_41365021_41365270_41365348_41365459_41365557_41365978
transcript_68890.known	chr4	+	646	7	FSM	ENSMUSG00000029049.15	ENSMUST00000127457.2	646	7	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_6	10.9493784704379	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATAAGAGAAACCGTGGATT	NA	False	NA	NA	False	NA	NA	NA	155171059	155177833	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155171139_155171877_155171950_155173942_155174042_155175339_155175451_155176725_155176817_155177518_155177607_155177727
transcript_68893.known	chr4	+	783	4	FSM	ENSMUSG00000073684.14	ENSMUST00000149468.8	783	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	98.8275715015242	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGACAGGAAGTCCCAGCT	NA	False	NA	NA	False	NA	NA	NA	155334353	155340920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155334421_155335001_155335108_155335212_155335494_155340591
transcript_68894.known	chr4	+	1076	4	FSM	ENSMUSG00000073684.14	ENSMUST00000178473.8	1076	4	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	46.5784881201135	617	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTTTCCTTCATAGCAA	NA	False	NA	8	True	NA	NA	NA	155334422	155341144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155334520_155334962_155335108_155335212_155335494_155340591
transcript_68895.nic	chr4	+	1135	4	NIC	ENSMUSG00000073684.14	novel	1479	3	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	99.2986516636667	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTTTGTTTCCTTCATAG	NA	False	NA	5	True	NA	NA	NA	155334261	155341141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_155334421_155334962_155335108_155335212_155335494_155340591
transcript_68897.known	chr4	+	710	4	FSM	ENSMUSG00000073684.14	ENSMUST00000105627.8	710	4	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_1	91.7617688485909	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGTCAGCCTGACAGGAT	NA	False	NA	NA	False	NA	NA	NA	155334445	155340840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155334520_155335001_155335108_155335212_155335494_155340591
transcript_689.known	SIRV6	+	1163	5	FSM	SIRV6A	SIRV610	1163	5	0	0	0	0	multi-exon	FALSE	canonical	3	12902	junction_1	2966.72052736688	7313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTAAAATGGGGTTTGCC	NA	False	NA	NA	False	ATTAAA	-5	NA	2472	11690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV6_+_2621_2740_2829_3106_3165_10724_11109_11205
transcript_68902.known	chr4	+	343	3	FSM	ENSMUSG00000073684.14	ENSMUST00000122957.2	343	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	108	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGACTTTCTCCTGGACG	NA	False	NA	NA	False	NA	NA	NA	155334333	155335267	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155334520_155335005_155335108_155335212
transcript_68903.known	chr4	+	1479	3	FSM	ENSMUSG00000073684.14	ENSMUST00000097747.9	1479	3	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_2	4.5	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTTTGTTTCCTTCATAG	NA	False	NA	5	True	NA	NA	NA	155334459	155341141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155335108_155335212_155335494_155340591
transcript_68904.known	chr4	-	2641	18	FSM	ENSMUSG00000029053.17	ENSMUST00000030922.15	2641	18	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_14	28.8196876191202	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGCATCAGTAAACCAAAT	NA	False	NA	NA	False	AAAACA	-10	NA	155445818	155346177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_155346989_155347158_155347275_155352151_155352242_155352640_155352721_155353489_155353610_155355655_155355744_155355925_155356062_155357397_155357485_155371236_155371335_155374087_155374277_155374959_155375013_155377614_155377697_155378723_155378856_155385386_155385473_155439110_155439162_155440883_155440974_155441937_155442060_155445608
transcript_68906.nnic	chr4	-	566	4	NNC	ENSMUSG00000029053.17	novel	2641	18	NA	NA	-85	1514	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	102.920681433163	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTATGTATATGAGTGTTT	NA	False	NA	-8	True	ATTAAA	-18	NA	155445903	155439076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_155439162_155440883_155440948_155441937_155442060_155445608
transcript_68907.nic	chr4	-	592	4	ISM	ENSMUSG00000029053.17	ENSMUST00000030922.15	2641	18	-85	92899	-85	1514	5prime_fragment	FALSE	canonical	3	200	junction_1	19.2584757675391	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTATGTATATGAGTGTTT	NA	False	NA	-8	True	ATTAAA	-18	NA	155445903	155439076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_-_155439162_155440883_155440974_155441937_155442060_155445608
transcript_68908.known	chr4	-	4083	15	FSM	ENSMUSG00000029053.17	ENSMUST00000103178.11	4083	15	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_14	50.8262847795291	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAAATGCCCTTCCTGTT	NA	False	NA	-11	True	ATTAAA	-8	NA	155430229	155344585	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_155346989_155347158_155347275_155352151_155352242_155352640_155352721_155353489_155353610_155355655_155355744_155355925_155356062_155357397_155357485_155371236_155371335_155374087_155374277_155374959_155375013_155377614_155377697_155378723_155378856_155385386_155385473_155429906
transcript_68909.known	chr4	+	2365	5	FSM	ENSMUSG00000078490.11	ENSMUST00000123952.9	2365	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	1.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGATTCTGGTCTGTTGCGT	2332	False	NA	NA	False	NA	NA	NA	155493714	155506449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155494028_155500136_155500223_155503076_155503153_155503303_155503448_155504703
transcript_68910.known	chr4	+	689	2	FSM	ENSMUSG00000078490.11	ENSMUST00000129481.2	689	2	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATCCTTTGAATGTGACC	2264	False	NA	NA	False	NA	NA	NA	155493646	155500444	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155494028_155500136
transcript_68911.known	chr4	+	968	5	FSM	ENSMUSG00000023153.10	ENSMUST00000178238.8	968	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.11803398874989	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGGTCTTTGCGGAAAGGG	144	False	NA	NA	False	AATAAA	-18	NA	155553570	155555315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155553668_155553759_155553804_155553900_155553961_155554445_155554625_155554727
transcript_68912.known	chr4	+	932	5	FSM	ENSMUSG00000023153.10	ENSMUST00000023920.3	932	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0.82915619758885	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCGGTCTTTGCGGAAAGG	161	False	NA	NA	False	AATAAA	-17	NA	155553587	155555314	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155553668_155553759_155553804_155553918_155553961_155554445_155554625_155554727
transcript_68913.known	chr4	+	908	4	FSM	ENSMUSG00000023153.10	ENSMUST00000178188.8	908	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.63299316185545	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGGTCTTTGCGGAAAGGG	144	False	NA	NA	False	AATAAA	-18	NA	155553570	155555315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155553668_155553759_155553804_155554445_155554625_155554727
transcript_68914.known	chr4	+	622	4	FSM	ENSMUSG00000023153.10	ENSMUST00000131599.8	622	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0.816496580927726	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCAGGGAGGAAGTGGCAG	144	False	NA	NA	False	GATAAA	-1	NA	155553570	155554872	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155553668_155553759_155553961_155554445_155554625_155554727
transcript_68915.known	chr4	+	940	4	FSM	ENSMUSG00000023153.10	ENSMUST00000145796.2	940	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0.816496580927726	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGGGAGCTCAAACCCCA	177	False	NA	NA	False	NA	NA	NA	155553603	155555246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155553804_155553918_155553961_155554445_155554625_155554727
transcript_68919.known	chr4	+	3131	12	FSM	ENSMUSG00000029064.16	ENSMUST00000030940.14	3131	12	0	0	0	0	multi-exon	FALSE	canonical	3	1763	junction_1	785.626496329864	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGTGTGATGGTTATTT	NA	False	NA	27	True	AATAAA	-19	NA	155575826	155643726	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155576038_155600087_155600137_155611869_155611967_155618153_155618193_155619814_155619922_155625012_155625077_155627487_155627651_155636111_155636179_155637774_155637977_155639471_155639689_155641627_155641744_155641927
transcript_68921.nnic	chr4	+	1551	12	NNC	ENSMUSG00000029064.16	novel	2832	10	NA	NA	-7532	165	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1175.08965017586	262	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGAGTGTGATTGTGAGA	9643	False	NA	10	True	AATAAA	-20	NA	155599386	155642275	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_155599469_155600087_155600137_155611869_155611967_155618153_155618193_155619814_155619922_155625012_155625077_155627487_155627651_155636111_155636179_155637774_155637977_155639471_155639689_155641627_155641744_155641927
transcript_68922.known	chr4	+	3088	11	FSM	ENSMUSG00000029064.16	ENSMUST00000105616.10	3088	11	0	0	0	0	multi-exon	FALSE	canonical	3	1867	junction_1	609.593339858631	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGTGTGATGGTTATTT	NA	False	NA	27	True	AATAAA	-19	NA	155575820	155643726	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155576038_155611869_155611967_155618153_155618193_155619814_155619922_155625012_155625077_155627487_155627651_155636111_155636179_155637774_155637977_155639471_155639689_155641627_155641744_155641927
transcript_68925.known	chr4	+	3152	12	FSM	ENSMUSG00000029063.17	ENSMUST00000105613.10	3152	12	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_7	32.1412173266612	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAGTAACAGCTTTCTTC	9572	False	NA	38	True	AATAAA	-24	NA	155648156	155675458	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155648437_155661449_155661655_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672242_155672317_155672476_155673066_155673150_155673784
transcript_68927.nnic	chr4	+	1795	12	NNC	ENSMUSG00000029063.17	novel	3152	12	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_11	206.229111138539	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGTTAAGTAACAGCTTT	9659	False	NA	34	True	AATAAA	-20	NA	155648243	155675454	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_155648437_155661449_155661655_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672242_155672317_155672476_155673066_155673150_155675050
transcript_68930.nnic	chr4	+	2822	11	NIC	ENSMUSG00000029063.17	novel	3152	12	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	3	33	junction_1	208.120662116956	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGTTAAGTAACAGCTTT	9693	False	NA	34	True	AATAAA	-20	NA	155648277	155675454	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_155648437_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672242_155672317_155672476_155673066_155673150_155673784
transcript_68936.known	chr4	+	2166	9	FSM	ENSMUSG00000042202.16	ENSMUST00000118607.2	2166	9	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_6	4.43705983732471	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAGATGGTCTGGAGTGC	NA	False	NA	NA	False	NA	NA	NA	155686400	155703776	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155686620_155694295_155694777_155694957_155695094_155696072_155696201_155697073_155697195_155700025_155700080_155700639_155700713_155702071_155702218_155702968
transcript_68937.known	chr4	+	805	7	FSM	ENSMUSG00000029062.15	ENSMUST00000135550.8	805	7	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	181.212045834585	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCCTTAGCGACCTTTAA	3947	False	NA	NA	False	NA	NA	NA	155709310	155714797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155709399_155709641_155709797_155709987_155710112_155710183_155710231_155711230_155711347_155713152_155713281_155714650
transcript_68942.known	chr4	+	6291	9	FSM	ENSMUSG00000042202.16	ENSMUST00000105608.9	6291	9	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	5.21865643628703	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGCAGTAGCCTCCTCAT	NA	False	NA	14	True	AATAAA	-19	NA	155685872	155707797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155686196_155694295_155694777_155694957_155695094_155696072_155696201_155697073_155697195_155700025_155700080_155700639_155700713_155702071_155702218_155702968
transcript_68943.known	chr4	+	2595	20	FSM	ENSMUSG00000029062.15	ENSMUST00000067081.10	2595	20	0	0	0	0	multi-exon	TRUE	canonical	3	247	junction_2	74.7943440763884	2689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTAACTTGCCTCGTAA	3962	False	NA	23	True	ATTAAA	-28	NA	155709325	155734395	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155709399_155709987_155710112_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
transcript_68944.known	chr4	+	2673	20	FSM	ENSMUSG00000029062.15	ENSMUST00000105598.2	2673	20	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_2	84.1228490935262	2547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTAACTTGCCTCGTAA	4003	False	NA	23	True	ATTAAA	-28	NA	155709366	155734395	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155709399_155709987_155710231_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
transcript_68945.known	chr4	+	3170	19	FSM	ENSMUSG00000029062.15	ENSMUST00000105600.8	3170	19	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_1	73.1081770772296	2535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTAACTTGCCTCGTAA	3976	False	NA	23	True	ATTAAA	-28	NA	155709339	155734395	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155710112_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
transcript_68946.nnic	chr4	-	1230	8	NNC	ENSMUSG00000029061.3	novel	1434	8	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	4.18939379960434	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTGTTGTTTCCTGGG	NA	False	NA	NA	False	GATAAA	-16	NA	155737679	155735111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_-_155735341_155735463_155735591_155735695_155735807_155735887_155736053_155736441_155736568_155736678_155736819_155736905_155737043_155737484
transcript_68947.known	chr4	-	1434	8	FSM	ENSMUSG00000029061.3	ENSMUST00000030937.2	1434	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_5	2.50713268211203	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTGTTGTTTCCTGGG	NA	False	NA	NA	False	GATAAA	-16	NA	155737841	155735111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_155735341_155735463_155735591_155735695_155735807_155735887_155736053_155736441_155736610_155736678_155736819_155736905_155737043_155737484
transcript_68964.known	chr4	-	3642	19	FSM	ENSMUSG00000029060.18	ENSMUST00000103176.10	3642	19	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_12	57.2103817307469	663	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCTTCCTGTTCCTTGC	7420	False	NA	-5	True	TATAAA	-13	NA	155753655	155739138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_155739451_155739561_155739628_155739708_155739897_155739978_155740158_155740528_155740763_155740850_155740978_155741102_155741264_155741369_155741527_155741622_155741772_155741845_155741980_155742054_155742218_155742311_155742417_155743579_155743723_155743844_155744040_155744134_155744242_155745306_155745479_155745562_155745832_155751470_155751627_155753030
transcript_68969.known	chr4	-	470	3	FSM	ENSMUSG00000029060.18	ENSMUST00000139289.2	470	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	137.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGTTGACTAAAGGCTTC	7425	False	NA	NA	False	ACTAAA	-7	NA	155753650	155751503	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_155751627_155753030_155753131_155753403
transcript_68970.known	chr4	+	2140	1	FSM	ENSMUSG00000074738.3	ENSMUST00000099265.3	2140	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCACTGTCTTGTGTGT	NA	False	NA	8	True	NA	NA	NA	155778798	155780938	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155778800_155780900
transcript_68971.known	chr4	+	1472	5	FSM	ENSMUSG00000029038.10	ENSMUST00000030905.9	1472	5	0	0	0	0	multi-exon	FALSE	canonical	3	1510	junction_4	100.903419169025	2166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGGAATTGCCACAAAAT	NA	False	NA	117	True	AATAAA	-33	NA	155789256	155818336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155789919_155799918_155800063_155815781_155815922_155816383_155816503_155817929
transcript_68976.known	chr4	+	874	4	FSM	ENSMUSG00000029038.10	ENSMUST00000105595.2	874	4	0	0	0	0	multi-exon	FALSE	canonical	3	1675	junction_1	40.2685430026411	578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGACCAAATGCTTTGGCT	NA	False	NA	NA	False	AGTAAA	-26	NA	155789591	155816646	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155789919_155799918_155800063_155815781_155815922_155816383
transcript_68977.known	chr4	+	1555	2	FSM	ENSMUSG00000029038.10	ENSMUST00000140322.2	1555	2	0	0	0	0	multi-exon	FALSE	canonical	3	1675	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTTGTGGGGAAAGACAG	NA	False	NA	NA	False	AGTAAA	-22	NA	155789580	155801135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155789919_155799918
transcript_68981.known	chr4	-	2413	16	FSM	ENSMUSG00000029036.19	ENSMUST00000030903.12	2413	16	0	0	0	0	multi-exon	FALSE	canonical	3	684	junction_5	53.203759265676	719	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGCTTGATGGCTGAGG	NA	False	NA	-9	True	AATAAA	-19	NA	155845550	155825097	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_155825810_155830485_155830595_155831770_155831939_155833127_155833199_155833613_155833666_155834588_155834714_155834929_155835056_155835324_155835382_155835893_155836050_155838023_155838094_155838338_155838505_155839213_155839284_155840135_155840196_155840517_155840620_155841548_155841626_155845258
transcript_68993.known	chr4	+	971	2	FSM	ENSMUSG00000054514.4	ENSMUST00000067628.2	971	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTTATTAGTCGTATTTA	2573	False	NA	NA	False	GATAAA	-16	NA	155845648	155846717	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155845744_155845841
transcript_68995.known	chr4	+	257	2	FSM	ENSMUSG00000054514.4	ENSMUST00000155010.2	257	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATACTTTTGTTTGTTT	2591	False	NA	NA	False	ATTAAA	-4	NA	155845666	155848006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155845744_155847826
transcript_68999.known	chr4	+	494	3	FSM	ENSMUSG00000029066.13	ENSMUST00000185148.8	494	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	616.5	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATTGTATAAATAAAGCCT	NA	False	NA	-11	True	NA	NA	NA	155888103	155893255	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155888200_155891364_155891443_155892935
transcript_69.known	ERCC-00145	+	1024	1	FSM	ERCC-00145A	DQ875386	1024	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1259	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00145_+_0_1000
transcript_690.known	SIRV6	+	459	5	FSM	SIRV6A	SIRV614	459	5	0	0	0	0	multi-exon	FALSE	canonical	3	2976	junction_3	7392.30118095847	9913	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTAAGACTGTATCGGAG	NA	False	NA	NA	False	AAAAAG	-17	NA	2516	10815	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV6_+_2621_2740_2829_3106_3165_7805_7924_10724
transcript_6900.known	chr10	+	3292	23	FSM	ENSMUSG00000019823.18	ENSMUST00000099934.11	3292	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	48.6000926775296	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTTTATGCTCTGTGCTGG	9147	False	NA	31	True	AATAAA	-20	NA	41352363	41363028	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_41352537_41354005_41354311_41354969_41355064_41355390_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
transcript_69000.known	chr4	+	764	4	FSM	ENSMUSG00000029066.13	ENSMUST00000030942.13	764	4	0	0	0	0	multi-exon	FALSE	canonical	3	1236	junction_3	66.873013989202	7491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGAGTTATTTCCTGGC	NA	False	NA	22	True	AATAAA	-18	NA	155887977	155893288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155888200_155888289_155888401_155891364_155891443_155892935
transcript_69001.known	chr4	+	810	5	FSM	ENSMUSG00000029066.13	ENSMUST00000137487.9	810	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	575.364884225654	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACATCCTGAAGTTATT	NA	False	NA	NA	False	NA	NA	NA	155888106	155894432	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155888200_155888289_155888401_155891364_155891443_155892935_155893166_155894134
transcript_69002.known	chr4	+	442	4	FSM	ENSMUSG00000029066.13	ENSMUST00000130188.2	442	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	645.346418600119	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATGTACAGAGGTTATT	NA	False	NA	NA	False	NA	NA	NA	155888108	155891934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155888200_155888289_155888401_155891364_155891443_155891772
transcript_69003.known	chr4	+	579	3	FSM	ENSMUSG00000029066.13	ENSMUST00000143503.2	579	3	0	0	0	0	multi-exon	FALSE	canonical	3	1236	junction_2	81	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAAAGATTGTATAAATAAA	NA	False	NA	-15	True	NA	NA	NA	155888215	155893251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155888401_155891364_155891443_155892935
transcript_69004.nnic	chr4	+	2288	12	NNC	ENSMUSG00000029068.17	novel	4220	11	NA	NA	-18	54	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_6	303.907880779686	139	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTTGTGGGCTGTCATTC	4607	False	NA	22	True	AATAAA	-27	NA	155896927	155908814	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155902995_155903010_155904785_155904886_155905240_155905346_155905429_155905572_155906268_155906378_155906461_155906555_155907799
transcript_69006.known	chr4	+	4220	11	FSM	ENSMUSG00000029068.17	ENSMUST00000139066.8	4220	11	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_8	224.905068862398	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGCTCTGTGCCATCCT	4637	False	NA	NA	False	ATTAAA	-15	NA	155896957	155909000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155902995_155904886_155905240_155905346_155905429_155905572_155906268_155906378_155906461_155906555_155907799
transcript_69007.known	chr4	+	2442	11	FSM	ENSMUSG00000029068.17	ENSMUST00000030944.11	2442	11	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_8	247.410205933385	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGCTCTGTGCCATCCT	4625	False	NA	NA	False	ATTAAA	-15	NA	155896945	155909000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155904785_155904886_155905240_155905346_155905429_155905572_155906268_155906378_155906461_155906555_155907799
transcript_69010.nic	chr4	+	1013	6	ISM	ENSMUSG00000029068.17	ENSMUST00000139066.8	4220	11	-30	5702	-18	2983	5prime_fragment	FALSE	canonical	3	604	junction_5	178.167786089405	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTTTTGTTTTAAAAAAAA	4607	False	NA	15	True	AATAAA	-15	NA	155896927	155903298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155902995
transcript_69011.nic	chr4	+	1316	6	ISM	ENSMUSG00000029068.17	ENSMUST00000139066.8	4220	11	-30	5399	-18	-2728	5prime_fragment	FALSE	canonical	3	604	junction_5	178.167786089405	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATTGATGGTTGTGTTTC	4607	False	NA	NA	False	AATATA	-34	NA	155896927	155903601	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155902995
transcript_69012.nic	chr4	+	1717	6	ISM	ENSMUSG00000029068.17	ENSMUST00000139066.8	4220	11	-30	4998	-18	-2327	5prime_fragment	FALSE	canonical	3	604	junction_5	178.167786089405	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTAGTCAATTTTAAATG	4607	False	NA	NA	False	ATTAAA	-1	NA	155896927	155904002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155902995
transcript_69015.known	chr4	+	833	4	FSM	ENSMUSG00000029068.17	ENSMUST00000136370.2	833	4	0	0	0	0	multi-exon	FALSE	canonical	3	885	junction_3	91.4123745573991	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGATAGATTAAAAACAGAGC	4914	False	NA	NA	False	NA	NA	NA	155897234	155900315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699
transcript_6903.nnic	chr10	+	925	6	NNC	ENSMUSG00000078451.6	novel	516	4	NA	NA	-616	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_5	2.1540659228538	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTTGATTTGAAGGCAA	NA	False	NA	NA	False	ATTAAA	-12	NA	41377029	41390282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_41377355_41377620_41377684_41377779_41377928_41378991_41379049_41383419_41383556_41390086
transcript_69030.known	chr4	+	773	4	FSM	ENSMUSG00000065990.13	ENSMUST00000105591.2	773	4	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_1	1010.64072086309	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCACTATAATAAATATTGG	NA	False	NA	-3	True	NA	NA	NA	155916125	155917488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155916224_155916439_155916528_155916808_155917255_155917347
transcript_69040.known	chr4	+	1159	4	FSM	ENSMUSG00000065990.13	ENSMUST00000084097.12	1159	4	0	0	0	0	multi-exon	FALSE	canonical	3	1785	junction_1	303.738191357111	7825	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGGAACCCAGGGCCCAAG	NA	False	NA	96	True	AAAAAG	-9	NA	155915807	155917587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155916193_155916439_155916528_155916808_155917255_155917347
transcript_69041.known	chr4	+	1029	3	FSM	ENSMUSG00000065990.13	ENSMUST00000105592.8	1029	3	0	0	0	0	multi-exon	FALSE	canonical	3	2371	junction_1	52	745	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTAGGCCGACCTAGA	NA	False	NA	27	True	AATAAA	-17	NA	155916115	155917518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155916528_155916808_155917255_155917347
transcript_69042.known	chr4	+	427	3	FSM	ENSMUSG00000065990.13	ENSMUST00000129711.2	427	3	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	1140	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGACTGCTCAATACTTAT	NA	False	NA	NA	False	NA	NA	NA	155916121	155916986	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155916193_155916349_155916528_155916808
transcript_69043.known	chr4	+	2203	10	FSM	ENSMUSG00000029070.10	ENSMUST00000030947.4	2203	10	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_3	12.5648932828686	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTAGTCTTGGACCTGCT	NA	False	NA	12	True	AATAAA	-13	NA	155924182	155928545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155924348_155925234_155925256_155925362_155925666_155925901_155926004_155926118_155926590_155927013_155927173_155927249_155927290_155927361_155927439_155927515_155927597_155927761
transcript_69045.nic	chr4	+	1781	7	ISM	ENSMUSG00000029070.10	ENSMUST00000030947.4	2203	10	1652	0	-926	0	3prime_fragment	FALSE	canonical	3	23	junction_2	4.10960933531265	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTAGTCTTGGACCTGCT	NA	False	NA	12	True	AATAAA	-13	NA	155925834	155928545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr4_+_155926004_155926118_155926590_155927013_155927173_155927249_155927290_155927361_155927439_155927515_155927597_155927761
transcript_69048.known	chr4	+	3358	15	FSM	ENSMUSG00000029071.17	ENSMUST00000030948.16	3358	15	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_6	19.2953679542474	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATGTGTGGCTTGTTTCT	NA	False	NA	20	True	AAAAAG	-18	NA	155931858	155943760	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155932362_155937874_155937945_155938093_155938216_155938439_155938544_155938786_155938926_155939022_155939117_155939187_155939258_155939342_155939483_155939560_155939638_155939728_155939797_155939923_155940077_155940588_155940721_155940818_155940987_155941070_155941278_155942449
transcript_69049.known	chr4	-	2662	3	FSM	ENSMUSG00000029073.10	ENSMUST00000030950.8	2662	3	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	2.5	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAGATCCATGTGTACAT	NA	False	NA	NA	False	AGTAAA	-27	NA	155953897	155949179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_155951343_155951569_155951795_155953623
transcript_69052.known	chr4	+	2368	17	FSM	ENSMUSG00000029034.10	ENSMUST00000030901.9	2368	17	0	0	0	0	multi-exon	FALSE	canonical	3	774	junction_2	75.0722308430354	824	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCCACTGTGTACCGTCA	9960	False	NA	21	True	AATAAA	-21	NA	155954002	155973560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972225_155972311_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076
transcript_6908.known	chr10	+	1068	8	FSM	ENSMUSG00000078451.6	ENSMUST00000105507.5	1068	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	3.97953950776689	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTTGATTTGAAGGCAA	NA	False	NA	NA	False	ATTAAA	-12	NA	41366434	41390282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_41366618_41370514_41370611_41374357_41374547_41377620_41377684_41377779_41377928_41378991_41379049_41383419_41383556_41390086
transcript_6909.known	chr10	+	2922	6	FSM	ENSMUSG00000019818.16	ENSMUST00000019962.15	2922	6	0	0	0	0	multi-exon	FALSE	canonical	3	1648	junction_4	8.82269800004511	1129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTCATATTTTGATTATGA	NA	False	NA	20	True	AATAAA	-25	NA	41395409	41407044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404667
transcript_69091.known	chr4	-	1243	8	FSM	ENSMUSG00000051557.16	ENSMUST00000097737.5	1243	8	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_3	43.9103911276089	919	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGGTCTGTTTATTACT	9080	False	NA	NA	False	AATAAA	-14	NA	155976238	155973318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_155973626_155973890_155974054_155974125_155974181_155974955_155975127_155975209_155975360_155975508_155975697_155975814_155975873_155976087
transcript_69092.known	chr4	-	598	3	FSM	ENSMUSG00000051557.16	ENSMUST00000129637.8	598	3	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_2	4	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGTGTAAGAAGGTGAGCCA	9652	False	NA	NA	False	NA	NA	NA	155975666	155974836	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_155975127_155975209_155975360_155975508
transcript_69093.known	chr4	-	462	2	FSM	ENSMUSG00000051557.16	ENSMUST00000130146.2	462	2	0	0	0	0	multi-exon	FALSE	canonical	3	295	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGCCCGGGGTTTTGGTA	9133	False	NA	NA	False	NA	NA	NA	155976185	155975508	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_155975873_155976087
transcript_69095.known	chr4	+	1434	8	FSM	ENSMUSG00000023286.17	ENSMUST00000105583.9	1434	8	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_1	334.708584793838	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATACTCTGTGTGTGTTCT	795	False	NA	34	True	TATAAA	-16	NA	156028325	156042168	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_156028471_156030711_156030875_156033463_156033595_156035928_156035970_156039690_156039794_156039878_156040018_156040824_156040906_156041537
transcript_69099.known	chr4	+	1309	7	FSM	ENSMUSG00000023286.17	ENSMUST00000103175.8	1309	7	0	0	0	0	multi-exon	FALSE	canonical	3	344	junction_1	275.8918870379	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATACTCTGTGTGTGTTCT	757	False	NA	34	True	TATAAA	-16	NA	156028287	156042168	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_156028471_156033463_156033595_156035928_156035970_156039690_156039794_156039878_156040018_156040824_156040906_156041537
transcript_691.known	SIRV6	+	1311	6	FSM	SIRV6A	SIRV613	1311	6	0	0	0	0	multi-exon	FALSE	canonical	3	472	junction_2	9686.74001715748	9067	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAAGACCGGGAGTATAC	NA	False	NA	NA	False	NA	NA	NA	3105	11824	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV6_+_3165_7104_7449_7805_7924_10724_10819_11031_11109_11205
transcript_69102.nnic	chr4	+	1306	7	NNC	ENSMUSG00000023286.17	novel	1309	7	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_4	406.426602639804	132	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGTGTGTGTTCTTAG	743	False	NA	37	True	TATAAA	-19	NA	156028273	156042171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_156028471_156033463_156033595_156035928_156035970_156039690_156039794_156039898_156040018_156040824_156040906_156041537
transcript_69103.known	chr4	+	3339	7	FSM	ENSMUSG00000023286.17	ENSMUST00000166489.8	3339	7	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_1	277.674519696873	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCCTGCCTTGTTGACTT	757	False	NA	NA	False	AATAAA	-29	NA	156028287	156044061	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_156028608_156033463_156033595_156035928_156035970_156039690_156039794_156039878_156040018_156040824_156040906_156041537
transcript_69105.known	chr4	+	1394	8	FSM	ENSMUSG00000023286.17	ENSMUST00000105582.8	1394	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	398.991125674929	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGTGTGTGTTCTTAG	1084	False	NA	37	True	TATAAA	-19	NA	156028614	156042171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_156028717_156030711_156030875_156033463_156033595_156035928_156035970_156039690_156039794_156039878_156040018_156040824_156040906_156041537
transcript_69107.known	chr4	+	1315	8	FSM	ENSMUSG00000023571.5	ENSMUST00000024338.5	1315	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_4	2.37332110369088	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGGTGCACTCTGCTTAT	NA	False	NA	10	True	AATAAA	-24	NA	156046774	156051086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_156047195_156048999_156049117_156049224_156049346_156049436_156049589_156050050_156050160_156050322_156050414_156050538_156050618_156050860
transcript_69111.known	chr4	+	1670	8	FSM	ENSMUSG00000029076.15	ENSMUST00000105579.8	1670	8	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	241.738769445576	1661	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCCTCTCCAGCATGTG	NA	False	NA	28	True	ATTAAA	-19	NA	156077328	156094667	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_156077464_156077609_156077792_156080645_156080976_156083854_156083992_156085126_156085241_156093243_156093403_156093600_156093777_156094230
transcript_69118.known	chr4	+	1654	7	FSM	ENSMUSG00000029076.15	ENSMUST00000105578.2	1654	7	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	268.571995313485	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTGCTTGGGATGGTTG	NA	False	NA	136	True	NA	NA	NA	156077833	156094775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_156078027_156080645_156080976_156083854_156083992_156085126_156085241_156093243_156093403_156093600_156093777_156094230
transcript_69120.known	chr4	+	5177	7	FSM	ENSMUSG00000029076.15	ENSMUST00000050078.13	5177	7	0	0	0	0	multi-exon	FALSE	canonical	3	674	junction_3	38.3521692853076	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTGTGCACGTGTGTG	NA	False	NA	6	True	NA	NA	NA	156077367	156098067	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_156077792_156080645_156080976_156083854_156083992_156085126_156085241_156093243_156093403_156093600_156093777_156094230
transcript_69121.known	chr4	+	973	5	FSM	ENSMUSG00000029076.15	ENSMUST00000097734.11	973	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	300.755714825172	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGCTTTTTGGTCATGG	NA	False	NA	NA	False	NA	NA	NA	156077626	156087156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_156077792_156080645_156080976_156083854_156083992_156085126_156085241_156086929
transcript_69123.known	chr4	+	1189	5	FSM	ENSMUSG00000041954.19	ENSMUST00000103173.10	1189	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGCTGTGTCCTAAGGAC	587	False	NA	NA	False	AATAAA	-19	NA	156110620	156113352	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_156110995_156111772_156111896_156112418_156112507_156112677_156112881_156112951
transcript_69124.known	chr4	-	810	4	FSM	ENSMUSG00000087381.9	ENSMUST00000126009.2	810	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.49443825784929	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTGGGCTTCAGGCCAGC	NA	False	NA	NA	False	NA	NA	NA	156116079	156110753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_156111344_156112931_156113012_156114878_156114974_156116034
transcript_69127.known	chr4	-	352	4	FSM	ENSMUSG00000087381.9	ENSMUST00000151836.8	352	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.49443825784929	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGACCCTTTTGATGTCTG	NA	False	NA	NA	False	AGTAAA	-25	NA	156116100	156108183	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_156108295_156112931_156113012_156114878_156114974_156116034
transcript_6913.known	chr10	+	1528	4	FSM	ENSMUSG00000019818.16	ENSMUST00000187279.7	1528	4	0	0	0	0	multi-exon	FALSE	canonical	3	1657	junction_2	7.25718035235908	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAATGTAGCAATTGTGTC	NA	False	NA	NA	False	AATAAA	-22	NA	41395496	41401268	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102
transcript_69131.nnic	chr4	+	2789	10	NNC	ENSMUSG00000059939.14	novel	2528	10	NA	NA	-18	0	intron_retention	FALSE	canonical	1	9	junction_3	76.5216018883266	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTGAGGTCATGATGTC	8237	False	NA	22	True	NA	NA	NA	156194420	156211722	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr4_+_156194481_156198345_156198459_156201152_156201306_156201466_156201561_156203620_156203697_156206389_156206486_156206807_156206874_156207991_156208127_156208432_156208580_156209873
transcript_69134.known	chr4	+	2528	10	FSM	ENSMUSG00000059939.14	ENSMUST00000072554.13	2528	10	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_5	55.1321644374276	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTGAGGTCATGATGTC	8255	False	NA	22	True	NA	NA	NA	156194438	156211722	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_156194481_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206486_156206807_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
transcript_69137.known	chr4	+	2660	10	FSM	ENSMUSG00000059939.14	ENSMUST00000169550.8	2660	10	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_5	55.5417760689095	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGTTGAGGTCATGATG	8271	False	NA	20	True	NA	NA	NA	156194454	156211720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_156194631_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206486_156206807_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
transcript_69147.nic	chr4	+	2166	9	NIC	ENSMUSG00000059939.14	novel	2660	10	NA	NA	-3	225	intron_retention	FALSE	canonical	3	85	junction_1	49.4621067080649	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGTTGTCCCAAGGTCT	8268	False	NA	NA	False	NA	NA	NA	156194451	156210901	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_156194631_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
transcript_69148.nic	chr4	+	2987	9	NIC	ENSMUSG00000059939.14	novel	2660	10	NA	NA	-3	0	intron_retention	FALSE	canonical	3	85	junction_1	49.4621067080649	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTGAGGTCATGATGTC	8268	False	NA	22	True	NA	NA	NA	156194451	156211722	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr4_+_156194631_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
transcript_69151.known	chr4	+	2937	8	FSM	ENSMUSG00000059939.14	ENSMUST00000125786.8	2937	8	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	44.3313129302804	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTGAGGTCATGATGTC	8258	False	NA	22	True	NA	NA	NA	156194441	156211722	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_+_156194481_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206874_156207991_156208127_156208432_156208580_156209873
transcript_69159.known	chr4	-	703	2	FSM	ENSMUSG00000035692.8	ENSMUST00000085425.6	703	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGATGCAATAAAAAGCTC	NA	False	NA	NA	False	NA	NA	NA	156285253	156283911	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr4_-_156284524_156285162
transcript_69163.nic	chr5	+	704	2	ISM	ENSMUSG00000090701.2	ENSMUST00000166202.2	434	3	725	-366	725	366	3prime_fragment	FALSE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTGACTCTTAAGACCAT	NA	False	NA	NA	False	AATAAA	-14	NA	3121467	3122888	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_3121649_3122365
transcript_69166.nnic	chr5	+	483	2	Genic_Genomic	ENSMUSG00000062353.7	novel	438	1	NA	NA	-44	57	multi-exon	FALSE	canonical	0	0	junction_1	0	2081	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	ATTAAA	-30	NA	3286386	3286925	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr5_+_3286599_3286654
transcript_69167.nnic	chr5	-	495	2	Antisense	novelGene_ENSMUSG00000062353.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACATGGTCTTCTTACATG	NA	False	NA	NA	False	NA	NA	NA	3286923	3286388	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr5_-_3286613_3286652
transcript_69169.known	chr5	+	438	1	FSM	ENSMUSG00000062353.7	ENSMUST00000118533.2	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	119009	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACATCCCATGCACGGCTT	NA	False	NA	NA	False	AATACA	-33	NA	3286430	3286868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_3286400_3286900
transcript_69171.nic	chr5	+	1630	8	NIC	ENSMUSG00000040274.12	novel	2470	7	NA	NA	-33	-1156	combination_of_known_junctions	FALSE	canonical	3	66	junction_1	16.8861735494711	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGCTGCCATTTCGTTTT	NA	False	NA	19	True	NA	NA	NA	3391451	3571069	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_3391575_3394118_3394600_3440680_3440817_3478990_3479159_3523118_3523229_3565453_3565505_3569358_3569495_3570644
transcript_69172.known	chr5	+	11525	8	FSM	ENSMUSG00000040274.12	ENSMUST00000165117.8	11525	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	33.2627143099493	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCGATTTCAGACTCCTTC	NA	False	NA	NA	False	AATAAA	-22	NA	3393892	3581008	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_3393972_3394118_3394600_3440680_3440817_3478990_3479159_3523118_3523229_3565453_3565505_3569358_3569495_3570644
transcript_69176.nnic	chr5	+	816	5	NNC	ENSMUSG00000040274.12	novel	11525	8	NA	NA	1968	-1156	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	42.6577953016796	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGCTGCCATTTCGTTTT	654	False	NA	19	True	NA	NA	NA	3522916	3571069	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_3523011_3523118_3523229_3565453_3565505_3569358_3569495_3570644
transcript_69179.nnic	chr5	+	546	2	NNC	ENSMUSG00000040274.12	novel	697	2	NA	NA	-110	810	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGTATCTGTGGACTGGT	NA	False	NA	NA	False	NA	NA	NA	3394201	3395263	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_3394600_3395115
transcript_6918.nnic	chr10	-	767	4	NNC	ENSMUSG00000075225.16	novel	1084	6	NA	NA	7882	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	2.86744175568088	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATTTCAAAGCTCCTTCT	NA	False	NA	NA	False	AATAAA	-13	NA	41420963	41414841	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_41415301_41415416_41415539_41417769_41417898_41420905
transcript_69180.nnic	chr5	+	721	2	NNC	ENSMUSG00000040274.12	novel	697	2	NA	NA	-110	985	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	50	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCTGGGATTTCCCCATT	NA	False	NA	NA	False	NA	NA	NA	3394201	3395438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_3394600_3395115
transcript_69181.nnic	chr5	+	1030	2	NNC	ENSMUSG00000040274.12	novel	697	2	NA	NA	-110	1294	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTTTGAAATACCAAGCCC	NA	False	NA	NA	False	AAAAAG	-17	NA	3394201	3395747	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_3394600_3395115
transcript_69182.known	chr5	+	1961	10	FSM	ENSMUSG00000058503.12	ENSMUST00000196059.5	1961	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	63.1977105383095	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTTGTGTCATTTGAAT	NA	False	NA	NA	False	NA	NA	NA	3593843	3619813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_3593948_3604638_3604737_3607743_3607823_3608472_3608548_3608660_3609160_3609605_3609699_3611038_3611090_3614240_3614328_3615702_3615751_3618986
transcript_69183.known	chr5	+	1943	10	FSM	ENSMUSG00000058503.12	ENSMUST00000197082.5	1943	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	76.8434355052331	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTGTCTTTGTGTATC	NA	False	NA	19	True	AGTAAA	-15	NA	3593832	3620238	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_3593948_3604638_3604737_3607743_3607823_3608472_3608548_3608660_3608694_3609096_3609160_3609605_3609699_3614240_3614328_3615702_3615751_3618986
transcript_69185.known	chr5	+	4555	24	FSM	ENSMUSG00000005907.15	ENSMUST00000121291.8	4555	24	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_8	11.5830199691965	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTGTTTGTTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	3646065	3687232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_3646518_3653231_3653376_3654795_3654880_3655433_3655549_3655646_3656411_3657666_3657787_3659853_3659978_3660178_3660289_3662880_3662964_3665074_3665208_3668816_3668914_3670594_3670766_3672232_3672388_3673940_3674131_3674419_3674587_3675999_3676135_3677517_3677583_3679969_3680113_3680188_3680293_3681588_3681766_3683715_3683947_3685314_3685513_3685779_3685911_3686770
transcript_6919.nic	chr10	-	1124	4	ISM	ENSMUSG00000075225.16	ENSMUST00000189488.3	7260	48	103442	59293	-355	11865	internal_fragment	FALSE	canonical	2	3	junction_1	2.62466929133727	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCATTATTCTGAAGAGTT	1186	False	NA	NA	False	ATTAAA	-18	NA	41489188	41474137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_41474552_41481046_41481213_41482567_41482689_41488765
transcript_69193.known	chr5	-	2368	5	FSM	ENSMUSG00000040302.18	ENSMUST00000042753.14	2368	5	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_2	28.3813318926368	939	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGCTATCTGCGTGTC	1474	False	NA	-9	True	AATAAA	-21	NA	3646585	3633977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_3634808_3640222_3640804_3641669_3641816_3645254_3645446_3645965
transcript_69195.known	chr5	-	853	4	FSM	ENSMUSG00000040302.18	ENSMUST00000176000.2	853	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	59.4474557908074	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATATAAAAGACGTGTGTA	2000	False	NA	NA	False	NA	NA	NA	3646059	3634775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_3634808_3640222_3640804_3641669_3641816_3645965
transcript_69196.known	chr5	-	641	3	FSM	ENSMUSG00000040302.18	ENSMUST00000124162.2	641	3	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_1	5.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATTCAGAAGTGGGGTTA	1977	False	NA	NA	False	AGTAAA	-2	NA	3646082	3641482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_3641816_3645254_3645446_3645965
transcript_69199.known	chr5	-	1569	6	FSM	ENSMUSG00000040351.12	ENSMUST00000199763.2	1569	6	0	0	0	0	multi-exon	TRUE	canonical	3	68	junction_5	15.4324333790883	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTTAGTTTATAGTATA	NA	False	NA	NA	False	AATAAA	-16	NA	3852787	3783679	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_3784185_3797020_3797139_3805593_3805777_3819428_3819730_3822516_3822788_3852596
transcript_692.known	SIRV6	+	783	3	FSM	SIRV6A	SIRV615	783	3	0	0	0	0	multi-exon	FALSE	canonical	3	18822	junction_2	2138	8745	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAAAGAGCAATCAACTCA	NA	False	NA	NA	False	NA	NA	NA	10237	11330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV6_+_10819_11031_11109_11205
transcript_69202.nnic	chr5	-	1238	5	NNC	ENSMUSG00000040351.12	novel	2572	19	NA	NA	-31073	11530	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_4	33.9742549587184	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTCTTGGAATTTTTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	3783205	3772149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_3772635_3777488_3777656_3779634_3779780_3782539_3782629_3782853
transcript_69203.nnic	chr5	-	1048	5	NNC	ENSMUSG00000040351.12	novel	2572	19	NA	NA	-31079	11530	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_4	43.6377130473172	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTCTTGGAATTTTTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	3783211	3772149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_3772635_3777488_3777656_3779634_3779780_3782539_3782629_3783049
transcript_69206.known	chr5	+	2930	17	FSM	ENSMUSG00000000600.16	ENSMUST00000080085.9	2930	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	61.5435567301728	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATTATTTAAACCATTTC	7985	False	NA	10	True	AATAAA	-23	NA	3853183	3891359	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_3853484_3856464_3856569_3857298_3857459_3859635_3859729_3861255_3861386_3862331_3862576_3862741_3862858_3863050_3863195_3868526_3868684_3869309_3869418_3872086_3872244_3873633_3873786_3880605_3880773_3881495_3881584_3882019_3882227_3886777_3886895_3890873
transcript_69208.known	chr5	+	5582	16	FSM	ENSMUSG00000000600.16	ENSMUST00000171023.8	5582	16	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_15	46.0519513400054	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGAGCATTTTATTGACTA	8206	False	NA	NA	False	NA	NA	NA	3853404	3894303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_3853484_3856418_3856569_3857298_3857459_3859635_3859729_3861255_3861386_3862331_3862576_3862741_3862858_3863050_3863195_3868526_3868684_3869309_3869418_3872086_3872244_3873633_3873786_3880605_3880773_3881495_3881584_3882019_3882227_3890873
transcript_69211.nic	chr5	+	1137	5	ISM	ENSMUSG00000000600.16	ENSMUST00000080085.9	2930	17	-19	29643	-19	0	5prime_fragment	FALSE	canonical	3	75	junction_1	65.501908369146	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAACCCCA	7966	False	NA	NA	False	NA	NA	NA	3853164	3861716	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_3853484_3856464_3856569_3857298_3857459_3859635_3859729_3861255
transcript_69212.known	chr5	+	4293	16	FSM	ENSMUSG00000000600.16	ENSMUST00000199845.5	4293	16	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_11	77.0066663780914	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATTTTGTGTGTTACTTC	7985	False	NA	-65	True	ATTAAA	-14	NA	3853183	3891284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_3853484_3856418_3856569_3857298_3857459_3859635_3859729_3861255_3861386_3862331_3862576_3862741_3862858_3863050_3863195_3868526_3868684_3869309_3869418_3872086_3873786_3880603_3880773_3881495_3881584_3882019_3882227_3886777_3886895_3890873
transcript_69213.known	chr5	+	793	1	FSM	ENSMUSG00000104699.2	ENSMUST00000199852.2	793	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	156	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTCTCTAGGAGACATGC	NA	False	NA	NA	False	NA	NA	NA	3925361	3926154	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_3925400_3926200
transcript_69214.known	chr5	-	1376	2	FSM	ENSMUSG00000040429.7	ENSMUST00000044746.5	1376	2	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_1	0	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTATTTTGTATGTATTT	NA	False	NA	NA	False	AATAAA	-23	NA	3943933	3940580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_3941898_3943874
transcript_69215.known	chr5	-	2413	2	FSM	ENSMUSG00000040429.7	ENSMUST00000117463.2	2413	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACATTTATTTTGTATGTA	NA	False	NA	NA	False	AATAAA	-20	NA	3943907	3940583	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_3941898_3942808
transcript_69216.known	chr5	+	2010	8	FSM	ENSMUSG00000040407.19	ENSMUST00000143365.8	2010	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	6.1145527311522	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAAAGAAAAAAATGCTG	NA	False	NA	NA	False	AATAAA	-13	NA	3978177	4010989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_3978491_3998680_3998897_4001689_4001735_4004396_4004451_4004791_4004963_4006156_4006313_4007623_4007801_4010111
transcript_69218.known	chr5	+	13123	48	FSM	ENSMUSG00000040407.19	ENSMUST00000044492.10	13123	48	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_3	16.8799451617757	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAACAAACAGTCTTCAAA	NA	False	NA	NA	False	AATAAA	-39	NA	3978273	4131310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_3978491_3998680_3998897_4001689_4001735_4004791_4004963_4006156_4006313_4007623_4007801_4010111_4012458_4018579_4018794_4020663_4020738_4021901_4022038_4022755_4022842_4025598_4025711_4026127_4026327_4031117_4031215_4042045_4042139_4051404_4051759_4053560_4053783_4054802_4054944_4055409_4055514_4058343_4058550_4063849_4064080_4078373_4078537_4079839_4080053_4082680_4082914_4084747_4084868_4088528_4088706_4089238_4089344_4093917_4094071_4094798_4094979_4095897_4096942_4100154_4100644_4101035_4101100_4101209_4101311_4105160_4105353_4105591_4105769_4108435_4108581_4110281_4110496_4111137_4111289_4114070_4114740_4115180_4115387_4115804_4115911_4117739_4117923_4119006_4119208_4120298_4120532_4122614_4122701_4127185_4127316_4127827_4127968_4129658
transcript_69219.known	chr5	+	491	2	FSM	ENSMUSG00000040407.19	ENSMUST00000141817.2	491	2	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGCACACTGTTCATTTAA	NA	False	NA	NA	False	NA	NA	NA	3978273	3998954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_3978491_3998680
transcript_69224.known	chr5	-	3931	10	FSM	ENSMUSG00000001467.6	ENSMUST00000001507.5	3931	10	0	0	0	0	multi-exon	FALSE	canonical	3	648	junction_6	50.6347365275053	1486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGATTTTCTTTGCCAAT	NA	False	NA	-22	True	ATTAAA	-22	NA	4154746	4131144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_4133304_4136459_4136629_4137777_4137874_4141844_4142041_4142387_4142508_4149123_4149299_4150144_4150272_4151177_4151355_4152927_4153027_4154133
transcript_69229.known	chr5	-	693	3	FSM	ENSMUSG00000001467.6	ENSMUST00000199909.2	693	3	0	0	0	0	multi-exon	FALSE	canonical	3	676	junction_2	72	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACTTGGAAAGAAACCATG	NA	False	NA	NA	False	AAGAAA	-15	NA	4154421	4151048	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_4151355_4152927_4153027_4154133
transcript_69230.nnic	chr5	+	1557	3	NNC	ENSMUSG00000053178.6	novel	1368	2	NA	NA	8	-9	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	2	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAGATTACATTTATTTT	NA	False	NA	NA	False	AATAAA	-13	NA	4242374	4247642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_4242419_4245994_4246201_4246335
transcript_69231.known	chr5	+	1368	2	FSM	ENSMUSG00000053178.6	ENSMUST00000177258.2	1368	2	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	0	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTATTTTGTATGTATT	NA	False	NA	NA	False	AATAAA	-22	NA	4242366	4247651	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_4242419_4246335
transcript_69235.known	chr5	-	3752	5	FSM	ENSMUSG00000046798.15	ENSMUST00000179804.8	3752	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	32.7671710710583	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGCTGCGTGCCCTGGTCT	NA	False	NA	91	True	AATAAA	-16	NA	5564789	5555014	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_5558455_5561070_5561123_5563161_5563252_5564231_5564377_5564764
transcript_69236.known	chr5	-	3597	4	FSM	ENSMUSG00000046798.15	ENSMUST00000060947.14	3597	4	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	5.18544972870135	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCTCTGTCCTTTTCT	NA	False	NA	-3	True	ATTAAA	-17	NA	5564873	5555108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_5558455_5561070_5561123_5563161_5563252_5564764
transcript_69239.nnic	chr5	-	543	4	NNC	ENSMUSG00000046798.15	novel	357	3	NA	NA	-21	1202	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	29.3371209675842	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTCTGCTCTGTTGCCTC	NA	False	NA	NA	False	AGTAAA	-14	NA	5564933	5559891	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_5560124_5561070_5561123_5563161_5563252_5564764
transcript_69242.nnic	chr5	-	3034	10	NNC	ENSMUSG00000040464.16	novel	2972	10	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_1	83.4476253277438	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAGTTTCTGTTCCTAATG	NA	False	NA	NA	False	GATAAA	-19	NA	5609545	5587453	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_5589452_5592246_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5605237_5605383_5606064_5606157_5607212_5607407_5609432
transcript_69243.known	chr5	-	2972	10	FSM	ENSMUSG00000040464.16	ENSMUST00000115441.9	2972	10	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_5	43.7924397331066	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAGTTTCTGTTCCTAATG	NA	False	NA	NA	False	GATAAA	-19	NA	5609538	5587453	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_5589452_5592301_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5605237_5605383_5606064_5606157_5607212_5607407_5609432
transcript_69244.nnic	chr5	-	1678	10	NNC	ENSMUSG00000040464.16	novel	2972	10	NA	NA	-7	423	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_1	83.4476253277438	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGACTCTGTTTTAAAA	NA	False	NA	NA	False	AATATA	-13	NA	5609545	5588809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_5589452_5592246_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5605237_5605383_5606064_5606157_5607212_5607407_5609432
transcript_69252.known	chr5	-	648	1	FSM	ENSMUSG00000040464.16	ENSMUST00000198799.2	648	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAATAAAGAAAAAGTCA	NA	False	NA	NA	False	AATAAA	-13	NA	5609516	5608868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_5608900_5609500
transcript_69253.known	chr5	-	4956	23	FSM	ENSMUSG00000040473.16	ENSMUST00000054865.13	4956	23	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_19	2.58132197536376	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCTGGTTTTATTACTCC	NA	False	NA	NA	False	AATAAA	-22	NA	5714239	5629277	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_5631367_5631903_5632009_5632441_5632529_5634650_5634849_5636355_5636433_5637140_5637279_5639119_5639313_5643771_5643854_5645920_5646040_5654273_5654393_5663685_5663851_5667168_5667386_5668947_5669070_5669166_5669216_5671919_5672044_5675749_5675928_5676008_5676159_5690128_5690228_5694423_5694501_5696935_5697046_5699789_5699856_5707787_5707848_5713907
transcript_69254.nnic	chr5	-	805	4	NNC	ENSMUSG00000040473.16	novel	2920	5	NA	NA	-2	-432	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	4.49691252107735	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAGCTGTATATGTTTGT	NA	False	NA	NA	False	AATAAA	-20	NA	5714241	5697261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_5697607_5699789_5699856_5707787_5707848_5713907
transcript_69255.nnic	chr5	-	686	4	NNC	ENSMUSG00000040473.16	novel	2920	5	NA	NA	-2	-551	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	4.49691252107735	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTAGAAGTACATTTTGC	NA	False	NA	NA	False	AATAAA	-18	NA	5714241	5697380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_5697607_5699789_5699856_5707787_5707848_5713907
transcript_69256.known	chr5	-	3657	6	FSM	ENSMUSG00000015653.14	ENSMUST00000015797.11	3657	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	7.4565407529229	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGGCTGTTCTCTGTGAGT	5284	False	NA	NA	False	NA	NA	NA	5744067	5721490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_5723697_5725840_5726006_5727316_5727845_5732533_5733056_5733291_5733418_5743957
transcript_69257.known	chr5	-	10408	6	FSM	ENSMUSG00000015653.14	ENSMUST00000115426.9	10408	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	11.3384302264467	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACAATTACAAAACTGG	4773	False	NA	NA	False	AATAAA	-17	NA	5744578	5714828	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_5723697_5725840_5726006_5727316_5727845_5732533_5733056_5733291_5733418_5744379
transcript_69258.nic	chr5	-	682	3	ISM	ENSMUSG00000015653.14	ENSMUST00000015797.11	3657	6	-30	11149	-30	-6545	5prime_fragment	FALSE	canonical	3	27	junction_2	6.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGAGTACCTGGCTTCAT	5254	False	NA	NA	False	AGTAAA	-19	NA	5744097	5732639	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_5733056_5733291_5733418_5743957
transcript_69259.nic	chr5	-	775	3	ISM	ENSMUSG00000015653.14	ENSMUST00000150238.2	2552	4	-79	6545	-34	-6545	5prime_fragment	FALSE	canonical	3	8	junction_2	16	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGAGTACCTGGCTTCAT	4739	False	NA	NA	False	AGTAAA	-19	NA	5744612	5732639	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_5733056_5733291_5733418_5744379
transcript_6926.nnic	chr10	-	2435	11	NNC	ENSMUSG00000019813.17	novel	2255	12	NA	NA	-5661	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_10	58.0965575572254	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGGAAATATTCTGGG	5851	False	NA	4	True	AATAAA	-25	NA	41628295	41594836	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41628007
transcript_69263.known	chr5	-	1230	5	FSM	ENSMUSG00000015652.10	ENSMUST00000015796.9	1230	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	6.38357266740185	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGTATCACAACTGTTTA	NA	False	NA	NA	False	AATAAA	-26	NA	5799326	5786316	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_5786674_5789795_5789961_5790349_5790863_5792825_5792941_5799246
transcript_69264.nnic	chr5	-	1156	4	NIC	ENSMUSG00000015652.10	novel	1230	5	NA	NA	-41	0	combination_of_known_splicesites	FALSE	canonical	2	7	junction_3	12.684198393627	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGTATCACAACTGTTTA	NA	False	NA	NA	False	AATAAA	-26	NA	5799367	5786316	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_5786674_5789795_5789961_5790349_5790863_5799246
transcript_69281.nnic	chr5	-	748	2	Genic_Genomic	ENSMUSG00000100801.2	novel	1941	1	NA	NA	-81	100	multi-exon	FALSE	canonical	3	192	junction_1	0	316	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	20	True	AATAAA	-34	NA	5833636	5831514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr5_-_5832082_5833455
transcript_69282.nnic	chr5	-	722	2	Genic_Genomic	ENSMUSG00000100801.2	novel	1941	1	NA	NA	-81	99	multi-exon	FALSE	canonical	2	262	junction_1	0	253	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	19	True	AATAAA	-33	NA	5833636	5831515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr5_-_5832082_5833480
transcript_69283.nnic	chr5	-	1487	2	Genic_Genomic	ENSMUSG00000100801.2	novel	1941	1	NA	NA	-81	98	multi-exon	FALSE	canonical	0	0	junction_1	0	459	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	18	True	AATAAA	-32	NA	5833636	5831516	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr5_-_5832082_5832714
transcript_69284.nnic	chr5	-	1039	2	Genic_Genomic	ENSMUSG00000100801.2	novel	1941	1	NA	NA	-81	97	multi-exon	FALSE	canonical	0	0	junction_1	0	282	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	17	True	AATAAA	-31	NA	5833636	5831517	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr5_-_5832278_5833357
transcript_69287.known	chr5	+	2251	8	FSM	ENSMUSG00000003161.16	ENSMUST00000148633.4	2251	8	0	0	0	0	multi-exon	FALSE	canonical	3	434	junction_5	36.6795277382635	906	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAACATTCCATAAGCA	NA	False	NA	-16	True	AGTAAA	-21	NA	8106526	8119151	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_8106640_8107537_8107622_8109352_8109423_8112383_8112428_8113259_8113408_8113636_8113751_8114557_8114617_8117532
transcript_69291.known	chr5	+	415	1	FSM	ENSMUSG00000082867.2	ENSMUST00000121828.2	415	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATATTTTTGTTTCGTCAT	NA	False	NA	NA	False	NA	NA	NA	8105138	8105553	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_8105100_8105600
transcript_69292.known	chr5	+	640	6	FSM	ENSMUSG00000003161.16	ENSMUST00000003245.10	640	6	0	0	0	0	multi-exon	FALSE	canonical	3	434	junction_3	16.5819178625393	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATTCCTTTGAAGTTT	NA	False	NA	-11	True	NA	NA	NA	8109341	8117726	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_8109423_8112383_8112428_8113259_8113408_8113636_8113751_8114557_8114617_8117532
transcript_69293.known	chr5	-	2402	12	FSM	ENSMUSG00000002297.17	ENSMUST00000171808.8	2402	12	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_3	47.2513937876549	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCCTGAGAATAAAAATGAA	NA	False	NA	NA	False	AATAAA	-22	NA	8472716	8447010	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_8448163_8449687_8449813_8453079_8453192_8453611_8453741_8454870_8454917_8455801_8455839_8458233_8458311_8458493_8458564_8460009_8460061_8462120_8462301_8471220_8471394_8472466
transcript_69294.known	chr5	-	2509	10	FSM	ENSMUSG00000002297.17	ENSMUST00000166364.8	2509	10	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_1	51.6858984517579	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCGTTGTCTAGTTGTATTG	NA	False	NA	NA	False	TATAAA	-4	NA	8472681	8451660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_8453192_8453611_8453741_8454870_8454917_8455801_8455839_8458233_8458311_8458493_8458564_8460009_8460061_8462120_8462301_8471220_8471394_8472466
transcript_693.known	SIRV6001	+	6000	1	FSM	SIRV6001A	SIRV6001	6000	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	473	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	6000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV6001_+_0_6000
transcript_69300.known	chr5	+	2749	12	FSM	ENSMUSG00000054099.12	ENSMUST00000196727.5	2749	12	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_4	12.5210566448736	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACAGATGTGTATTTGTG	NA	False	NA	NA	False	ATTAAA	-10	NA	8472857	8504789	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_8473040_8477195_8477268_8477407_8477517_8478628_8478689_8480430_8480519_8490720_8490789_8492446_8492572_8493611_8493786_8497297_8497408_8499612_8499695_8502745_8502827_8503191
transcript_6931.known	chr10	-	1769	11	FSM	ENSMUSG00000019813.17	ENSMUST00000187143.7	1769	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	86.4694165586886	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGGAGGGCACAGTAATT	126	False	NA	NA	False	NA	NA	NA	41685867	41595220	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41657479_41657547_41685841
transcript_69311.known	chr5	+	2602	11	FSM	ENSMUSG00000054099.12	ENSMUST00000170496.6	2602	11	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	12.7342059037853	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATGTTGTTTTACATTAC	NA	False	NA	NA	False	AATAAA	-19	NA	8472898	8504736	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_8473040_8477407_8477517_8478628_8478689_8480411_8480519_8490720_8490789_8492446_8492572_8493611_8493786_8497297_8497408_8499612_8499695_8502745_8502827_8503191
transcript_69321.known	chr5	+	1481	3	FSM	ENSMUSG00000054099.12	ENSMUST00000199817.5	1481	3	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	11	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGGATGTTGTTAAAATT	NA	False	NA	NA	False	AATAAA	-23	NA	8472857	8478634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_8473040_8477195_8477268_8477407
transcript_69329.nnic	chr5	+	2373	7	NNC	ENSMUSG00000040584.9	novel	494	2	NA	NA	-141	-52	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	78.9460082728837	403	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCCATAATTGTAAATAAG	NA	False	NA	NA	False	AATAAA	-21	NA	8783146	8798518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_8783506_8783598_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
transcript_69331.nic	chr5	+	1891	6	ISM	ENSMUSG00000040584.9	ENSMUST00000126846.2	2705	10	13314	641	-155	-641	3prime_fragment	FALSE	canonical	3	112	junction_1	56.9582303095874	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGCATTCATATTTTTGA	NA	False	NA	NA	False	TATAAA	-16	NA	8783132	8797929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
transcript_69332.nic	chr5	+	2480	6	ISM	ENSMUSG00000040584.9	ENSMUST00000126846.2	2705	10	13314	52	-155	-52	3prime_fragment	FALSE	canonical	3	112	junction_1	56.9582303095874	426	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCCATAATTGTAAATAAG	NA	False	NA	NA	False	AATAAA	-21	NA	8783132	8798518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
transcript_69334.known	chr5	+	4306	28	FSM	ENSMUSG00000028970.10	ENSMUST00000009058.10	4306	28	0	0	0	0	multi-exon	TRUE	canonical	3	66	junction_6	57.377196351684	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCTGTTATGTATATGA	NA	False	NA	10	True	ATTAAA	-17	NA	8848185	8916315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_8848290_8848735_8848807_8855432_8855482_8856007_8856171_8860557_8860616_8862654_8862847_8863573_8863746_8864722_8864848_8871271_8871444_8873931_8874046_8874186_8874298_8874472_8874599_8874688_8874893_8875112_8875284_8875550_8875713_8877325_8877500_8877702_8877850_8878822_8878931_8882193_8882272_8885027_8885112_8887590_8887795_8895747_8895849_8899511_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
transcript_69335.nnic	chr5	+	1472	7	NNC	ENSMUSG00000028970.10	novel	613	4	NA	NA	-344	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	92.0627805117549	90	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCTGTTATGTATATGA	5040	False	NA	10	True	ATTAAA	-17	NA	8898988	8916315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_8899045_8899511_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
transcript_69338.nnic	chr5	+	1733	7	NNC	ENSMUSG00000028970.10	novel	613	4	NA	NA	-231	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	90.3119593409422	92	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCTGTTATGTATATGA	5153	False	NA	10	True	ATTAAA	-17	NA	8899101	8916315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_8899419_8899511_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
transcript_69341.nic	chr5	+	1404	6	ISM	ENSMUSG00000028970.10	ENSMUST00000009058.10	4306	28	-73	52775	-34	-111	5prime_fragment	FALSE	canonical	3	110	junction_4	19.0850727009357	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTATTTGTAACACAATTT	NA	False	NA	3	True	AATAAA	-21	NA	8848112	8863540	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_8848290_8848735_8848807_8855432_8855482_8856007_8856171_8860557_8860616_8862654
transcript_69343.nic	chr5	+	1916	6	ISM	ENSMUSG00000028970.10	ENSMUST00000009058.10	4306	28	50826	0	-321	0	3prime_fragment	FALSE	canonical	3	175	junction_1	34.1912269449343	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCTGTTATGTATATGA	5063	False	NA	10	True	ATTAAA	-17	NA	8899011	8916315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
transcript_69345.nnic	chr5	+	1486	6	NNC	ENSMUSG00000028970.10	novel	613	4	NA	NA	-327	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	91.0173609812985	114	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCTGTTATGTATATGA	7111	False	NA	10	True	ATTAAA	-17	NA	8901059	8916315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_8901271_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
transcript_69348.nic	chr5	+	836	5	ISM	ENSMUSG00000028970.10	ENSMUST00000009058.10	4306	28	-128	55437	-89	-2773	5prime_fragment	FALSE	canonical	3	110	junction_4	17.1955662890176	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGGGTTACCTTGGGGAA	NA	False	NA	NA	False	AATAAA	-18	NA	8848057	8860878	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_8848290_8848735_8848807_8855432_8855482_8856007_8856171_8860557
transcript_69352.nic	chr5	+	594	4	ISM	ENSMUSG00000028970.10	ENSMUST00000196580.5	690	6	-95	7402	-89	-7402	5prime_fragment	FALSE	canonical	3	144	junction_1	3.74165738677394	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAATGTGCAGTGTTGTGT	NA	False	NA	NA	False	AATGAA	-19	NA	8848057	8856249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_8848290_8848735_8848807_8855432_8855482_8856007
transcript_69353.nic	chr5	+	1524	4	ISM	ENSMUSG00000028970.10	ENSMUST00000196580.5	690	6	-95	6472	-89	-6472	5prime_fragment	FALSE	canonical	3	144	junction_1	3.74165738677394	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCCTGTGCTAAAAGTTAT	NA	False	NA	NA	False	AATAAA	-17	NA	8848057	8857179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_8848290_8848735_8848807_8855432_8855482_8856007
transcript_69357.known	chr5	+	489	1	FSM	ENSMUSG00000028970.10	ENSMUST00000196819.2	489	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5384	False	NA	NA	False	NA	NA	NA	8899332	8899821	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_8899300_8899800
transcript_69359.known	chr5	-	2996	18	FSM	ENSMUSG00000003623.5	ENSMUST00000003720.5	2996	18	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_6	20.8630399507397	240	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGTTGAAAACAATGATTGT	NA	False	NA	-11	True	AATAAA	-30	NA	9047324	9016032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_9016973_9018646_9018767_9018869_9018964_9019047_9019127_9019915_9020040_9023585_9023717_9023944_9024053_9024132_9024217_9026007_9026110_9027454_9027581_9028197_9028292_9033688_9033798_9037767_9037893_9038103_9038286_9039605_9039731_9043505_9043642_9046451_9046548_9047103
transcript_69367.known	chr5	-	3806	18	FSM	ENSMUSG00000042508.17	ENSMUST00000071921.13	3806	18	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_6	37.7529760049699	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTGAGAATTCCTTGCT	NA	False	NA	66	True	NA	NA	NA	9211776	9168800	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9176539_9176750_9177956_9178109_9179147_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200493_9201797_9201919_9211613
transcript_69370.known	chr5	-	3498	17	FSM	ENSMUSG00000042508.17	ENSMUST00000095017.11	3498	17	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_5	37.579706957346	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGATTTTGAGCCATGCA	NA	False	NA	-5	True	AATAAA	-20	NA	9211749	9168871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9177956_9178109_9179147_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200493_9201797_9201919_9211613
transcript_69376.known	chr5	+	1040	5	FSM	ENSMUSG00000079659.6	ENSMUST00000115365.3	1040	5	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_1	62.4019230472908	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTTTTTTTCCTCCTTT	NA	False	NA	10	True	AATAAA	-21	NA	9150746	9169045	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_9150860_9151216_9151396_9166479_9166531_9167458_9167564_9168453
transcript_69377.known	chr5	-	3029	4	FSM	ENSMUSG00000042508.17	ENSMUST00000185193.8	3029	4	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_3	21.853044537445	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAAAAAAAAGATCCA	NA	False	NA	NA	False	NA	NA	NA	9211749	9196367	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_9199023_9200375_9200493_9201797_9201919_9211613
transcript_69378.known	chr5	-	904	2	FSM	ENSMUSG00000104941.2	ENSMUST00000198497.2	904	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	AATAAA	-15	NA	12405754	12404663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_12405372_12405558
transcript_69379.known	chr5	-	763	1	FSM	ENSMUSG00000105854.2	ENSMUST00000197212.2	763	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGCAACAAATAAATAATGAC	NA	False	NA	NA	False	NA	NA	NA	12529595	12528832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_12528800_12529600
transcript_69382.nnic	chr5	+	1954	3	Intergenic	novelGene_96	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGTGGCATTATTTCATG	NA	False	NA	NA	False	NA	NA	NA	12528794	12720772	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr5_+_12529727_12718934_12719490_12720305
transcript_69384.known	chr5	-	319	1	FSM	ENSMUSG00000062038.6	ENSMUST00000078246.6	319	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCACTGCCTTATTTATTAC	NA	False	NA	NA	False	AAAAAG	-17	NA	13171733	13171414	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_13171400_13171700
transcript_69386.known	chr5	-	3135	8	FSM	ENSMUSG00000057614.7	ENSMUST00000074694.7	3135	8	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_3	12.7711409363583	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACCTATTGACTGAATTT	NA	False	NA	-7	True	AATAAA	-21	NA	18565353	18470132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_18472208_18476823_18476978_18478443_18478574_18494521_18494651_18496460_18496619_18513550_18513693_18513780_18513824_18565049
transcript_69389.known	chr5	-	4840	18	FSM	ENSMUSG00000039987.16	ENSMUST00000118174.8	4840	18	0	0	0	0	multi-exon	TRUE	canonical	3	159	junction_9	38.2607155309617	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAGCACTTCATAGTTTG	NA	False	NA	-4	True	AATAAA	-13	NA	21087122	20963660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_20966074_20966661_20966788_20969211_20969308_20970755_20970912_20977172_20977260_20978682_20978815_20979000_20979274_20980876_20981006_20987270_20987490_20994626_20994783_20999292_20999480_21006899_21007065_21008182_21008349_21010652_21010812_21012401_21012472_21018237_21018295_21060119_21060200_21086953
transcript_69393.known	chr5	-	2000	8	FSM	ENSMUSG00000039987.16	ENSMUST00000140147.2	2000	8	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_2	38.2152870362805	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGAAAAAGAAATTAGAATAT	NA	False	NA	NA	False	NA	NA	NA	21087076	20998299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_20999480_21006899_21007065_21008182_21008349_21010652_21010812_21012401_21012472_21018237_21018295_21060119_21060200_21086953
transcript_69395.known	chr5	+	1147	2	FSM	ENSMUSG00000045435.10	ENSMUST00000115259.3	1147	2	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_1	0	1198	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCCACATGCCTCTTAC	NA	False	NA	8	True	AATAAA	-18	NA	21087188	21091868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_21087654_21091186
transcript_69398.known	chr5	-	7651	7	FSM	ENSMUSG00000039968.10	ENSMUST00000196780.5	7651	7	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_5	8.0363756341608	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGACAATTCAGTTTGTT	NA	False	NA	NA	False	AATAAA	-43	NA	21161396	21100588	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_21101900_21107285_21107454_21110777_21110921_21113104_21113243_21124522_21125161_21132617_21132729_21156254
transcript_694.known	SIRV6002	+	6000	1	FSM	SIRV6002A	SIRV6002	6000	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	6000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV6002_+_0_6000
transcript_69403.known	chr5	-	357	3	FSM	ENSMUSG00000039968.10	ENSMUST00000197089.2	357	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	18	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAATATAGAAGACTTACAA	NA	False	NA	NA	False	NA	NA	NA	21150502	21125139	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_21125161_21132617_21132729_21150277
transcript_69404.known	chr5	-	3280	18	FSM	ENSMUSG00000028771.14	ENSMUST00000030556.8	3280	18	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_17	13.1951023733656	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATTGTATTGTTTTTTTT	NA	False	NA	-1	True	ATTAAA	-25	NA	21260909	21191642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_21192493_21194004_21194107_21196391_21196423_21197706_21197775_21198227_21198297_21202780_21203755_21206269_21206356_21207420_21207517_21207614_21207693_21210346_21210414_21214439_21214583_21216682_21216743_21219691_21219764_21220708_21220748_21224210_21224307_21227015_21227093_21234773_21234883_21260646
transcript_69406.known	chr5	+	3508	19	FSM	ENSMUSG00000039934.13	ENSMUST00000197522.5	3508	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.04822012578407	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATGGTCAAAAAGATATAG	9999	False	NA	NA	False	AATAAA	-15	NA	21391252	21464764	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_21391458_21399397_21399475_21401042_21401100_21412238_21412309_21412585_21412640_21422387_21422477_21426223_21426294_21427387_21427438_21431241_21431347_21431771_21431832_21433021_21433066_21434158_21434245_21447802_21447881_21451896_21451999_21455738_21455832_21455936_21456155_21458367_21458438_21458956_21459040_21462867
transcript_69407.known	chr5	+	3788	2	FSM	ENSMUSG00000039899.6	ENSMUST00000035799.6	3788	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTTCGATGTGGAAACAGC	NA	False	NA	NA	False	AATAAA	-19	NA	21577639	21583372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_21578307_21580251
transcript_69408.known	chr5	+	3027	8	FSM	ENSMUSG00000047221.6	ENSMUST00000056045.5	3027	8	0	0	0	0	multi-exon	FALSE	canonical	1	21	junction_1	12.2873753029984	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTTGTCACTGTCCCA	NA	False	NA	91	True	AATAAA	-13	NA	21629955	21687122	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_21630575_21634721_21634832_21638688_21638782_21643697_21643837_21652313_21652356_21660779_21660876_21664156_21664292_21685329
transcript_69410.known	chr5	+	1590	3	FSM	ENSMUSG00000047221.6	ENSMUST00000153301.2	1590	3	0	0	0	0	multi-exon	FALSE	canonical	1	21	junction_1	18	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGAGAGAGGGAGAGAGAG	NA	False	NA	NA	False	TTTAAA	-44	NA	21629998	21639592	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_21630575_21634721_21634832_21638688
transcript_69411.known	chr5	-	501	1	FSM	ENSMUSG00000106294.2	ENSMUST00000199822.2	501	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAATACCAAAGAGGGAAA	NA	False	NA	NA	False	AATGAA	-34	NA	21819492	21818991	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_21819000_21819500
transcript_69412.known	chr5	+	1167	6	FSM	ENSMUSG00000038525.17	ENSMUST00000148873.8	1167	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	154.901775328755	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGGTTGCTCCTATTTTT	NA	False	NA	2	True	AATAAA	-12	NA	21850810	21866614	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_21851234_21853659_21853767_21856742_21856878_21858373_21858551_21865550_21865623_21866361
transcript_69414.known	chr5	+	2221	6	FSM	ENSMUSG00000038525.17	ENSMUST00000072896.13	2221	6	0	0	0	0	multi-exon	FALSE	canonical	3	325	junction_5	40.0679422980517	571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTCCAATTTGTTTTAT	NA	False	NA	6	True	AGTAAA	-26	NA	21850876	21867692	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_21851234_21853617_21853767_21856742_21856878_21858373_21858551_21865550_21865623_21866361
transcript_69415.known	chr5	+	2700	5	FSM	ENSMUSG00000038525.17	ENSMUST00000095495.3	2700	5	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_4	29.9457843443781	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAATTTCTTCCCCCACTG	NA	False	NA	19	True	AATAAA	-21	NA	21851050	21867606	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_21851234_21853617_21853767_21856742_21856878_21858373_21858551_21865550
transcript_69419.known	chr5	-	3724	5	FSM	ENSMUSG00000044968.17	ENSMUST00000060899.9	3724	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	45.4883226773641	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACTTGAAAAGATACCTGAA	NA	False	NA	NA	False	AATAAA	-17	NA	21906394	21867900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_21870361_21875486_21875602_21880452_21881100_21888153_21888464_21906202
transcript_69421.known	chr5	-	3954	5	FSM	ENSMUSG00000044968.17	ENSMUST00000115217.8	3954	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	48.8108594474631	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTGAAAAGATACCTGAAAA	NA	False	NA	NA	False	AATAAA	-19	NA	21906392	21867898	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_21870361_21875486_21875602_21880452_21881100_21888153_21888464_21905972
transcript_69424.nnic	chr5	-	680	3	NNC	ENSMUSG00000044968.17	novel	3954	5	NA	NA	28011	-2037	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	64	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTAAAGTTCCATTTCTTT	NA	False	NA	NA	False	AGTAAA	-25	NA	21878381	21869937	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_21870361_21875486_21875602_21878239
transcript_69426.nnic	chr5	-	462	3	NNC	ENSMUSG00000044968.17	novel	3954	5	NA	NA	28011	-2255	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	64	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTTCTGCAAGTGTGTGT	NA	False	NA	NA	False	AAGAAA	-34	NA	21878381	21870155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_21870361_21875486_21875602_21878239
transcript_69432.known	chr5	+	1615	13	FSM	ENSMUSG00000029017.14	ENSMUST00000030882.12	1615	13	0	0	0	0	multi-exon	TRUE	canonical	3	306	junction_5	33.8430815184827	2033	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTAGTCTGTTATATGT	NA	False	NA	16	True	AATAAA	-18	NA	21942138	21962150	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_21942275_21943866_21944008_21945037_21945125_21945482_21945613_21947755_21947955_21948376_21948457_21950975_21951089_21951975_21952120_21953746_21953908_21961399_21961486_21961584_21961674_21961812_21961889_21961977
transcript_69436.known	chr5	-	2133	17	FSM	ENSMUSG00000029014.15	ENSMUST00000030771.12	2133	17	0	0	0	0	multi-exon	FALSE	canonical	3	849	junction_11	91.8299209136107	2798	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTATAGTCATCATTTAA	NA	False	NA	3	True	AATAAA	-30	NA	21990249	21962264	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_21962408_21962762_21962918_21965363_21965472_21965623_21965725_21966538_21966724_21968443_21968514_21968738_21968828_21971553_21971704_21973434_21973557_21973643_21973736_21975482_21975549_21978775_21978857_21979931_21980074_21981714_21981814_21986318_21986395_21988044_21988236_21989986
transcript_69437.known	chr5	-	1994	17	FSM	ENSMUSG00000029014.15	ENSMUST00000115195.8	1994	17	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_16	257.325297228527	1561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACATTTTCACTTGGAATT	NA	False	NA	-12	True	AATAAA	-15	NA	21990214	21962279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_21962408_21962762_21962918_21965363_21965472_21965623_21965725_21966538_21966724_21968443_21968514_21968738_21968828_21971553_21971704_21973434_21973557_21973643_21973736_21975482_21975549_21978775_21978857_21979931_21980074_21981714_21981814_21986318_21986395_21988044_21988147_21989986
transcript_69445.known	chr5	-	1011	6	FSM	ENSMUSG00000029014.15	ENSMUST00000147987.2	1011	6	0	0	0	0	multi-exon	FALSE	canonical	3	855	junction_1	59.5449410109709	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCATTGAGCCATCTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	21990152	21978519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_21978857_21979931_21980074_21981714_21981814_21986318_21986395_21988044_21988236_21989986
transcript_69450.known	chr5	+	1775	13	FSM	ENSMUSG00000028932.9	ENSMUST00000239497.2	1775	13	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	502.901056095752	15550	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACTGTGTCAGTGCTTC	NA	False	NA	11	True	AATAAA	-7	NA	21990280	22008775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_21990516_21991647_21991883_22000105_22000144_22000760_22000843_22001530_22001631_22004420_22004553_22004933_22005007_22005541_22005638_22006205_22006371_22007523_22007612_22008067_22008271_22008363_22008461_22008544
transcript_69464.known	chr5	-	399	1	FSM	ENSMUSG00000084235.3	ENSMUST00000118224.2	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	322	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCCTCTGCTTGTAATAC	NA	False	NA	-97	True	NA	NA	NA	22733717	22733318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_22733300_22733700
transcript_69465.known	chr5	-	2103	14	FSM	ENSMUSG00000029012.12	ENSMUST00000030872.12	2103	14	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_10	41.6678895284064	900	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTAGCTGTGTTCTTTGGT	NA	False	NA	-7	True	AATAAA	-14	NA	22755373	22691486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731452_22731532_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751597_22752921_22753015_22755189
transcript_69466.known	chr5	-	2117	13	FSM	ENSMUSG00000029012.12	ENSMUST00000135906.8	2117	13	0	0	0	0	multi-exon	TRUE	canonical	3	527	junction_9	41.555434863164	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTGTGTTCTTTGGTTCTG	NA	False	NA	-3	True	AATAAA	-18	NA	22755302	22691482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751597_22752921_22753015_22755189
transcript_69467.known	chr5	-	973	10	FSM	ENSMUSG00000029012.12	ENSMUST00000142987.8	973	10	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_8	171.967051107666	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCCAGCGAGAACTGATAAG	NA	False	NA	NA	False	NA	NA	NA	22755373	22728548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_22728627_22729813_22729867_22731360_22731452_22731532_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751503_22752921_22753015_22755189
transcript_69475.known	chr5	+	4299	3	FSM	ENSMUSG00000097207.8	ENSMUST00000181764.8	4299	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTACAATTTTGCTTTAA	9210	False	NA	NA	False	AATAAA	-13	NA	22755434	22763168	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_22755471_22758756_22758836_22758984
transcript_6948.nnic	chr10	-	959	3	NNC	ENSMUSG00000019813.17	novel	711	3	NA	NA	-5661	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	97	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACTGTGAGGCCTTGGTC	5851	False	NA	NA	False	NA	NA	NA	41628295	41618697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_41619218_41621766_41621918_41628007
transcript_69484.nnic	chr5	+	598	2	Antisense	novelGene_ENSMUSG00000081855.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1173	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCGCGAAGGCTACTGGG	NA	False	NA	NA	False	NA	NA	NA	22817574	22818215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr5_+_22817997_22818039
transcript_69486.known	chr5	-	555	1	FSM	ENSMUSG00000081855.5	ENSMUST00000121001.2	555	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	71205	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTCAGCATAAAATAAAGGC	NA	False	NA	NA	False	AAGAAA	-34	NA	22818180	22817625	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_22817600_22818200
transcript_69489.nnic	chr5	-	1261	2	NIC	ENSMUSG00000073147.4	novel	719	3	NA	NA	45	97	combination_of_known_splicesites	FALSE	canonical	3	5	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTGTTTGGGGTTTGTTT	NA	False	NA	NA	False	AATAAA	-19	NA	23638872	23627304	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_23627901_23638207
transcript_69490.nnic	chr5	-	1199	2	NIC	ENSMUSG00000073147.4	novel	719	3	NA	NA	45	35	combination_of_known_splicesites	FALSE	canonical	3	5	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTTGTCATGCATGTGA	NA	False	NA	NA	False	AATAAA	-13	NA	23638872	23627366	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_23627901_23638207
transcript_69491.nnic	chr5	-	961	2	NIC	ENSMUSG00000073147.4	novel	719	3	NA	NA	45	-203	combination_of_known_splicesites	FALSE	canonical	3	5	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAGAAAGAAAGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	23638872	23627604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_23627901_23638207
transcript_69492.known	chr5	-	1983	1	FSM	ENSMUSG00000073147.4	ENSMUST00000189045.2	1983	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGGTAAATATTCGTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	23639267	23637284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_23637300_23639300
transcript_69499.nic	chr5	-	958	10	NIC	ENSMUSG00000062604.12	novel	4259	15	NA	NA	22	17	combination_of_known_junctions	FALSE	canonical	3	183	junction_2	31.1249969011848	75	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCTGAAAAAGAAACAGAAGA	NA	False	NA	NA	False	NA	NA	NA	23880990	23730711	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_23730744_23731787_23731814_23732894_23733061_23745372_23745480_23750520_23750609_23751977_23752066_23753452_23753562_23770111_23770264_23880717_23880773_23880855
transcript_695.known	SIRV6003	+	6000	1	FSM	SIRV6003A	SIRV6003	6000	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	6000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV6003_+_0_6000
transcript_69500.nnic	chr5	-	931	10	NNC	ENSMUSG00000062604.12	novel	946	9	NA	NA	22	17	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_2	64.2716073097043	28	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCTGAAAAAGAAACAGAAGA	NA	False	NA	NA	False	NA	NA	NA	23880990	23730711	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_23730744_23731787_23731814_23732921_23733061_23745372_23745480_23750520_23750609_23751977_23752066_23753452_23753562_23770111_23770264_23880717_23880773_23880855
transcript_69501.nnic	chr5	-	990	10	NIC	ENSMUSG00000062604.12	novel	6491	15	NA	NA	22	-1059	combination_of_known_splicesites	FALSE	canonical	3	29	junction_8	98.3694221284061	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTATTCACATGTCTAT	NA	False	NA	NA	False	NA	NA	NA	23880990	23731787	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_23731814_23732894_23733061_23745372_23745480_23750520_23750609_23751977_23752066_23753452_23753562_23770111_23770264_23821324_23821389_23880717_23880773_23880855
transcript_69504.nic	chr5	-	926	9	NIC	ENSMUSG00000062604.12	novel	946	9	NA	NA	22	-1059	combination_of_known_junctions	FALSE	canonical	3	183	junction_1	32.7945784391262	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTATTCACATGTCTAT	NA	False	NA	NA	False	NA	NA	NA	23880990	23731787	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_23731814_23732894_23733061_23745372_23745480_23750520_23750609_23751977_23752066_23753452_23753562_23770111_23770264_23880717_23880773_23880855
transcript_69505.nnic	chr5	-	899	9	NNC	ENSMUSG00000062604.12	novel	946	9	NA	NA	22	-1059	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_1	68.162375068655	35	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTATTCACATGTCTAT	NA	False	NA	NA	False	NA	NA	NA	23880990	23731787	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_23731814_23732921_23733061_23745372_23745480_23750520_23750609_23751977_23752066_23753452_23753562_23770111_23770264_23880717_23880773_23880855
transcript_69507.nnic	chr5	-	914	9	NIC	ENSMUSG00000062604.12	novel	946	9	NA	NA	22	0	combination_of_known_splicesites	FALSE	canonical	3	29	junction_7	103.876052942918	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCACGGAGTGGCAGAAAG	NA	False	NA	NA	False	NA	NA	NA	23880990	23732944	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_23733061_23745372_23745480_23750520_23750609_23751977_23752066_23753452_23753562_23770111_23770264_23821324_23821389_23880717_23880773_23880855
transcript_69509.nic	chr5	-	850	8	NIC	ENSMUSG00000062604.12	novel	946	9	NA	NA	22	0	combination_of_known_junctions	FALSE	canonical	3	228	junction_6	19.3369689286335	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCACGGAGTGGCAGAAAG	NA	False	NA	NA	False	NA	NA	NA	23880990	23732944	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_23733061_23745372_23745480_23750520_23750609_23751977_23752066_23753452_23753562_23770111_23770264_23880717_23880773_23880855
transcript_6951.known	chr10	-	2232	11	FSM	ENSMUSG00000019813.17	ENSMUST00000189770.7	2232	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_10	72.0486641097529	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGGAAATATTCTGGG	129	False	NA	4	True	AATAAA	-25	NA	41685864	41594836	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685568_41685660_41685783
transcript_69513.nnic	chr5	-	548	3	NIC	ENSMUSG00000062604.12	novel	440	5	NA	NA	22	-1303	combination_of_known_splicesites	FALSE	canonical	3	29	junction_1	127	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGCTTTTTAAAAGACTT	NA	False	NA	NA	False	NA	NA	NA	23880990	23821030	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_23821389_23880717_23880773_23880855
transcript_69514.nnic	chr5	-	452	3	NNC	ENSMUSG00000062604.12	novel	4259	15	NA	NA	22	-60009	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	140	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTATCTTTATTTTGCAA	NA	False	NA	NA	False	AATAAA	-14	NA	23880990	23879736	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_23879999_23880717_23880773_23880855
transcript_69517.known	chr5	+	7317	27	FSM	ENSMUSG00000029004.16	ENSMUST00000115128.8	7317	27	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	9.24166024173517	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGATATGAAAATATGTTTA	NA	False	NA	NA	False	TATAAA	-31	NA	23639446	23709233	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_23639782_23651523_23651597_23655149_23655335_23668013_23668129_23669700_23669931_23672105_23672187_23676745_23676805_23678478_23678652_23681483_23681523_23683511_23683743_23683850_23683982_23686206_23686325_23687399_23687510_23690344_23690610_23691299_23691399_23697265_23697431_23698196_23698506_23700983_23701239_23701401_23701547_23701969_23702221_23702536_23702594_23702725_23703293_23704279_23704591_23705253_23705343_23705448_23705575_23705724_23705811_23706521
transcript_69518.nic	chr5	+	1935	13	ISM	ENSMUSG00000029004.16	ENSMUST00000094962.9	7252	26	-15	18784	-15	0	5prime_fragment	FALSE	canonical	3	18	junction_10	3.30298686376774	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGGAAAAAAGGAAAAAAAG	NA	False	NA	NA	False	AAAACA	-23	NA	23639423	23690449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_23639782_23655149_23655335_23668013_23668129_23669700_23669931_23672105_23672187_23676745_23676805_23678478_23678652_23681483_23681523_23683511_23683743_23683850_23683982_23686206_23686325_23687399_23687510_23690344
transcript_6952.known	chr10	-	2177	11	FSM	ENSMUSG00000019813.17	ENSMUST00000019951.16	2177	11	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_4	38.3583107031579	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGCCTGTGGAAATATT	390	False	NA	-1	True	AATAAA	-20	NA	41685603	41594841	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685568
transcript_6953.known	chr10	-	2255	12	FSM	ENSMUSG00000019813.17	ENSMUST00000186239.7	2255	12	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_11	75.4430440303278	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGGAAATATTCTGGG	384	False	NA	4	True	AATAAA	-25	NA	41685609	41594836	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41657479_41657547_41685568
transcript_69531.known	chr5	-	345	4	FSM	ENSMUSG00000105987.5	ENSMUST00000198984.5	345	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	6.68331255192114	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTAGGAGTCTTGTGAT	5261	False	NA	NA	False	NA	NA	NA	23917660	23905225	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_23905472_23915363_23915407_23916113_23916149_23917639
transcript_69533.known	chr5	-	981	1	FSM	ENSMUSG00000105987.5	ENSMUST00000198331.2	981	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATTCTAGTCTGAGGTCT	NA	False	NA	NA	False	NA	NA	NA	23904274	23903293	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_23903300_23904300
transcript_69534.known	chr5	-	71	1	FSM	ENSMUSG00000118744.1	ENSMUST00000116685.3	71	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGAACAGGCAGGAATTTA	6862	False	NA	NA	False	NA	NA	NA	23916059	23915988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_23916000_23916100
transcript_69535.known	chr5	-	3407	16	FSM	ENSMUSG00000057541.15	ENSMUST00000119946.8	3407	16	0	0	0	0	multi-exon	TRUE	canonical	3	301	junction_13	29.1369181623589	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCATGTAAAAATCTTGTC	NA	False	NA	-8	True	AATAAA	-24	NA	23988709	23945645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_23946975_23947341_23947434_23948414_23948545_23951423_23951526_23952791_23952919_23953680_23953842_23954802_23954865_23957259_23957386_23959455_23959585_23965219_23965298_23967360_23967473_23973765_23973911_23980666_23980769_23980881_23980967_23983070_23983498_23988509
transcript_6954.known	chr10	-	711	3	FSM	ENSMUSG00000019813.17	ENSMUST00000189222.2	711	3	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_2	46.5	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACTGTGAGGCCTTGGTC	385	False	NA	NA	False	NA	NA	NA	41685608	41618697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_41619218_41621766_41621918_41685568
transcript_69541.known	chr5	+	3298	15	FSM	ENSMUSG00000028999.16	ENSMUST00000030852.13	3298	15	0	0	0	0	multi-exon	TRUE	canonical	2	56	junction_5	10.4591040315534	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAAGTATTTCTTTGTGTG	NA	False	NA	4	True	NA	NA	NA	23992708	24025367	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_23992881_23993287_23993334_23999300_23999486_24005592_24005835_24010307_24010482_24010568_24010719_24012036_24012194_24014781_24014893_24014966_24015193_24015894_24016033_24016707_24016908_24020649_24020865_24021736_24021918_24022032_24022152_24024385
transcript_69545.known	chr5	+	1761	4	FSM	ENSMUSG00000028999.16	ENSMUST00000112256.3	1761	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	37.2051370407666	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGTTTGGTTTTTATAT	NA	False	NA	NA	False	NA	NA	NA	23992738	24002055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_23992881_23993287_23993334_23999300_23999486_24000667
transcript_69547.known	chr5	+	1886	2	FSM	ENSMUSG00000028999.16	ENSMUST00000120869.6	1886	2	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAACAAACAAGGAAAC	NA	False	NA	NA	False	NA	NA	NA	23992708	23995001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_23992881_23993287
transcript_6955.known	chr10	-	1240	2	FSM	ENSMUSG00000019813.17	ENSMUST00000188514.2	1240	2	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACATAAAAATAAAAAAGGTA	367	False	NA	NA	False	NA	NA	NA	41685626	41620735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_41621918_41685568
transcript_69566.known	chr5	-	1125	3	FSM	ENSMUSG00000028998.7	ENSMUST00000030851.7	1125	3	0	0	0	0	multi-exon	FALSE	canonical	3	3790	junction_2	61.5	26845	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTATTAGTGTAGTCCTAG	NA	False	NA	NA	False	AATAAA	-15	NA	24049159	24043941	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_24044827_24046707_24046757_24048968
transcript_69568.known	chr5	+	1375	4	FSM	ENSMUSG00000097180.6	ENSMUST00000181574.6	1375	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	11.0453610171873	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCGTCAGGTTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	24055594	24060036	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_24055620_24057118_24057154_24057715_24057759_24058764
transcript_6957.known	chr10	+	3809	10	FSM	ENSMUSG00000038332.14	ENSMUST00000099931.11	3809	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	18.7662686623146	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGCTTTATTAATTTCAT	-8	True	NA	8	True	AATAAA	-15	NA	41685930	41784420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_41687297_41770037_41770104_41770815_41771017_41772018_41772202_41774178_41774422_41778524_41778673_41779687_41779801_41781169_41781361_41782331_41782477_41783267
transcript_69571.known	chr5	+	318	3	FSM	ENSMUSG00000097180.6	ENSMUST00000197551.2	318	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	6	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTTTTACTTTTATGTT	NA	False	NA	NA	False	CATAAA	-31	NA	24055598	24057977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_24055620_24057118_24057154_24057715
transcript_69572.known	chr5	+	71	1	FSM	ENSMUSG00000118905.1	ENSMUST00000175580.3	71	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAACAGGCAGGAATTTA	NA	False	NA	NA	False	NA	NA	NA	24057207	24057278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_24057200_24057300
transcript_69575.known	chr5	+	3086	12	FSM	ENSMUSG00000028986.13	ENSMUST00000200116.5	3086	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	21.6954883530201	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATAGATTTGCTTTGTTT	NA	False	NA	5	True	ATTAAA	-12	NA	24305603	24365782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_24305873_24331819_24331923_24332666_24332761_24332977_24333103_24339961_24340138_24343303_24343479_24346148_24346292_24354122_24354364_24356716_24356839_24361887_24362090_24363536_24363635_24364444
transcript_69576.known	chr5	+	2966	11	FSM	ENSMUSG00000028986.13	ENSMUST00000030841.10	2966	11	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_4	4.51220566907139	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAGATTTGCTTTGTTTA	NA	False	NA	6	True	ATTAAA	-13	NA	24305602	24365783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_24305873_24331819_24331923_24332666_24332761_24332977_24333103_24339961_24340138_24343303_24343479_24346148_24346292_24354122_24354364_24361887_24362090_24363536_24363635_24364444
transcript_6958.known	chr10	+	2600	10	FSM	ENSMUSG00000038332.14	ENSMUST00000041438.7	2600	10	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	20.085619202938	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGCTTTATTAATTTCAT	NA	False	NA	8	True	AATAAA	-15	NA	41763434	41784420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_41763592_41770037_41770104_41770815_41771017_41772018_41772202_41774178_41774422_41778524_41778673_41779687_41779801_41781169_41781361_41782331_41782477_41783267
transcript_69583.known	chr5	+	2914	7	FSM	ENSMUSG00000048439.16	ENSMUST00000049887.13	2914	7	0	0	0	0	multi-exon	TRUE	canonical	3	52	junction_5	7.43116560320265	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACTGTCTGTTATCTACC	5146	False	NA	NA	False	NA	NA	NA	24369960	24389011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_24370202_24372340_24372564_24374293_24374389_24380451_24380529_24382997_24383085_24386078_24386164_24386905
transcript_69590.known	chr5	+	1624	6	FSM	ENSMUSG00000048439.16	ENSMUST00000115101.4	1624	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	25.7013618316229	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCAAGGGACTCTTTTGT	5183	False	NA	NA	False	AATAAA	-20	NA	24369997	24387835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_24370202_24372340_24372564_24374293_24374389_24382997_24383085_24386078_24386164_24386905
transcript_6960.known	chr10	-	669	4	FSM	ENSMUSG00000071324.12	ENSMUST00000161081.2	669	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.05480466765633	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTCCTGCCGCCCACTG	NA	False	NA	NA	False	NA	NA	NA	41894378	41876344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_41876495_41884648_41884722_41887763_41888020_41894188
transcript_69603.nnic	chr5	-	1197	5	Antisense	novelGene_ENSMUSG00000048439.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_2	4.30116263352131	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTATGGCTTTCAGTCTCT	NA	False	NA	NA	False	AATAAA	-22	NA	24393642	24374653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr5_-_24375240_24376114_24376263_24388207_24388405_24388526_24388673_24393522
transcript_6961.known	chr10	-	1135	3	FSM	ENSMUSG00000071324.12	ENSMUST00000162405.8	1135	3	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	0.5	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGAATCCTGAGTCTCATC	NA	False	NA	NA	False	AATAAA	-33	NA	41894376	41875803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_41876495_41887763_41888020_41894188
transcript_69613.nnic	chr5	-	1000	4	Antisense	novelGene_ENSMUSG00000048439.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	5.24933858267454	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTATGGCTTTCAGTCTCT	NA	False	NA	NA	False	AATAAA	-22	NA	24393642	24374653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr5_-_24375240_24376114_24376263_24388526_24388673_24393522
transcript_69620.known	chr5	-	741	4	FSM	ENSMUSG00000038319.15	ENSMUST00000129246.2	741	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	4.64279609239471	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGACGCCTCTCCCTGCCC	NA	False	NA	NA	False	NA	NA	NA	24527252	24525080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_24525148_24526242_24526421_24526633_24526821_24526943
transcript_69621.nnic	chr5	-	1107	3	NIC	ENSMUSG00000038319.15	novel	741	4	NA	NA	-75	-25	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	11.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCCAGGGTGCTGGTTAG	NA	False	NA	-31	True	NA	NA	NA	24527327	24524611	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_24525148_24526633_24526821_24526943
transcript_69624.known	chr5	-	3902	14	FSM	ENSMUSG00000038295.15	ENSMUST00000059401.7	3902	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	10.361512763374	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTACCACAGCCGGAGGAAC	9218	False	NA	NA	False	NA	NA	NA	24597141	24589178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_24590070_24590221_24590362_24590443_24590568_24590750_24590848_24591005_24591140_24591307_24591545_24591945_24592126_24592384_24592542_24592686_24593442_24594778_24594921_24595459_24595622_24596014_24596080_24596201_24596246_24596367
transcript_69625.nic	chr5	+	1022	2	NIC	ENSMUSG00000028978.13	novel	4132	26	NA	NA	18406	3	intron_retention	FALSE	canonical	3	14	junction_1	0	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGTGAGTTACAATGATT	1062	False	NA	NA	False	CATAAA	-27	NA	24588213	24589328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_24588723_24588815
transcript_69628.known	chr5	+	2939	16	FSM	ENSMUSG00000028973.19	ENSMUST00000073076.12	2939	16	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_4	17.0567679626984	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCGAGGCTGTAGCTTAG	NA	False	NA	29	True	AATAAA	-19	NA	24599152	24614943	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_24599582_24604910_24605221_24605522_24605679_24605754_24605850_24605972_24606079_24606760_24606923_24607042_24607129_24607239_24607338_24608070_24608177_24610812_24610847_24611115_24611253_24611397_24611493_24611665_24611800_24612305_24612454_24613565_24613817_24614351
transcript_6963.known	chr10	-	2535	3	FSM	ENSMUSG00000048756.12	ENSMUST00000175881.8	2535	3	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_2	12.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCACTCTTTATGTCCTCT	NA	False	NA	NA	False	AATAAA	-24	NA	42152692	42072263	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_42073898_42150811_42151542_42152521
transcript_69631.known	chr5	+	1657	10	FSM	ENSMUSG00000028973.19	ENSMUST00000115074.6	1657	10	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_9	57.8772647745017	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCAACCACGTCAGGAGTG	NA	False	NA	NA	False	NA	NA	NA	24599393	24608975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_24599582_24604910_24605221_24605522_24605679_24605754_24605850_24605972_24606079_24606760_24606923_24607042_24607129_24607239_24607338_24608070_24608177_24608625
transcript_69640.known	chr5	-	2059	12	FSM	ENSMUSG00000028969.11	ENSMUST00000030814.11	2059	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	52.4982486917657	936	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGGAAGCCAACCATGCC	NA	False	NA	-11	True	TATAAA	-5	NA	24628528	24623238	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_24624461_24624597_24624679_24624780_24624842_24625256_24625327_24625490_24625588_24625728_24625804_24625952_24626049_24627329_24627387_24627495_24627557_24627645_24627714_24627795_24627885_24628446
transcript_69647.nic	chr5	-	1449	11	NIC	ENSMUSG00000028969.11	novel	2059	12	NA	NA	-225	191	intron_retention	FALSE	canonical	0	0	junction_3	55.0178152965019	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGATGATATGGTGGTGG	NA	False	NA	-9	True	CATAAA	-18	NA	24628753	24624182	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_24624461_24624597_24624679_24624780_24624842_24625256_24625327_24625490_24625588_24625728_24625804_24625952_24626049_24627329_24627557_24627645_24627714_24627795_24627885_24628446
transcript_6967.known	chr10	-	2513	13	FSM	ENSMUSG00000038302.15	ENSMUST00000041024.15	2513	13	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_11	7.72801541291309	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCTTGTCTGATTCATT	NA	False	NA	1	True	AATAAA	-18	NA	42354561	42188580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42314349_42314402_42330302_42330527_42354258
transcript_69672.known	chr5	-	1893	10	FSM	ENSMUSG00000028959.15	ENSMUST00000030800.13	1893	10	0	0	0	0	multi-exon	FALSE	canonical	3	1073	junction_9	118.54686003725	831	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTAAGTCTTGTTTCTGGG	NA	False	NA	-4	True	NA	NA	NA	24650285	24646036	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647082_24647179_24647394_24648001_24648142_24648274_24648455_24648892_24649304_24650063
transcript_69694.known	chr5	-	411	2	FSM	ENSMUSG00000028959.15	ENSMUST00000151900.8	411	2	0	0	0	0	multi-exon	FALSE	canonical	3	1095	junction_1	0	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTAAGTCTTGTTTCTGG	NA	False	NA	-5	True	NA	NA	NA	24646522	24646037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_24646260_24646333
transcript_69695.known	chr5	-	2552	9	FSM	ENSMUSG00000028959.15	ENSMUST00000149085.8	2552	9	0	0	0	0	multi-exon	FALSE	canonical	3	1095	junction_1	118.721049102508	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTAAGTCTTGTTTCTGG	NA	False	NA	-5	True	NA	NA	NA	24650185	24646037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647082_24647179_24647394_24648001_24648142_24648274_24648455_24648892
transcript_69696.known	chr5	-	1399	9	FSM	ENSMUSG00000028959.15	ENSMUST00000115041.2	1399	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	414.137186660411	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATGCTAAGTCTTGTTTC	NA	False	NA	-8	True	NA	NA	NA	24650206	24646040	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647082_24647179_24647394_24648001_24648142_24648274_24648455_24650063
transcript_69698.known	chr5	-	1598	3	FSM	ENSMUSG00000028958.16	ENSMUST00000115033.8	1598	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	44.5	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCCAGTGTGTCTGTGTG	NA	False	NA	-4	True	ATTAAA	-18	NA	24652623	24650463	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_24651272_24651531_24651951_24652252
transcript_69699.known	chr5	-	1333	3	FSM	ENSMUSG00000028958.16	ENSMUST00000030799.15	1333	3	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_2	11	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTGTGTGTTGCTTGA	NA	False	NA	4	True	ATTAAA	-26	NA	24652852	24650455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_24651272_24651531_24651951_24652754
transcript_69700.known	chr5	+	582	1	FSM	ENSMUSG00000105858.2	ENSMUST00000198276.2	582	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGTATTTTTTTGTATT	7402	False	NA	NA	False	ATTAAA	-23	NA	24652905	24653487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_24652900_24653500
transcript_69706.known	chr5	-	2569	14	FSM	ENSMUSG00000028953.11	ENSMUST00000030795.10	2569	14	0	0	0	0	multi-exon	FALSE	canonical	3	1197	junction_13	122.348082348837	810	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCCTGGGTCTCTGAGC	NA	False	NA	-29	True	AATAAA	-21	NA	24782465	24770342	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_24771002_24771476_24771681_24772181_24772311_24772498_24772562_24773202_24773314_24773564_24773655_24773735_24773856_24774068_24774165_24776141_24776245_24777000_24777097_24778419_24778775_24779164_24779378_24781516_24781726_24782344
transcript_69714.known	chr5	-	309	1	FSM	ENSMUSG00000067719.6	ENSMUST00000088299.6	309	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGACCAATCTTTAACTT	NA	False	NA	NA	False	NA	NA	NA	24786860	24786551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_24786600_24786900
transcript_69716.nnic	chr5	-	1338	12	NNC	ENSMUSG00000028949.14	novel	1735	13	NA	NA	376	0	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_11	57.2637799648938	77	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCCTTGTGGTCATTGTG	NA	False	NA	0	True	ATTAAA	-17	NA	24803560	24797619	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_24797803_24798014_24798117_24798222_24798346_24798634_24798771_24798919_24799018_24799829_24799992_24800140_24800243_24800387_24800484_24800720_24800844_24800949_24801073_24801804_24801848_24803513
transcript_69717.nic	chr5	-	1386	12	ISM	ENSMUSG00000028949.14	ENSMUST00000030791.12	1735	13	3326	0	252	0	3prime_fragment	FALSE	canonical	3	153	junction_8	20.0610638050861	87	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCCTTGTGGTCATTGTG	NA	False	NA	0	True	ATTAAA	-17	NA	24803684	24797619	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_24797803_24798014_24798117_24798222_24798346_24798634_24798771_24798919_24799018_24799829_24799992_24800140_24800243_24800387_24800484_24800720_24800844_24800949_24801073_24801804_24801848_24803589
transcript_69720.known	chr5	+	3715	4	FSM	ENSMUSG00000038181.17	ENSMUST00000121863.5	3715	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	9.8770215933527	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTTTTTAGGTCTAGG	NA	False	NA	3	True	ATTAAA	-14	NA	24791747	24797482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_24793299_24794094_24794660_24795306_24795490_24796066
transcript_69721.known	chr5	+	3269	15	FSM	ENSMUSG00000028954.12	ENSMUST00000068825.8	3269	15	0	0	0	0	multi-exon	FALSE	canonical	3	384	junction_1	91.6660977100463	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGTCTGACGCAGTGA	NA	False	NA	11	True	AATAAA	-20	NA	24890821	24915376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_24891021_24894377_24894509_24897804_24897973_24899697_24899760_24900517_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986
transcript_69725.known	chr5	+	3546	15	FSM	ENSMUSG00000028954.12	ENSMUST00000197407.5	3546	15	0	0	0	0	multi-exon	TRUE	canonical	3	299	junction_1	111.175284472544	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTCTGGTCTGACGCAGT	NA	False	NA	9	True	AATAAA	-18	NA	24890529	24915374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_24891021_24894390_24894509_24897804_24897973_24899697_24899760_24900517_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986
transcript_69729.known	chr5	+	3862	14	FSM	ENSMUSG00000028954.12	ENSMUST00000200337.2	3862	14	0	0	0	0	multi-exon	FALSE	canonical	3	384	junction_1	95.1263252285049	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTCTGGTCTGACGCAGT	NA	False	NA	9	True	AATAAA	-18	NA	24890984	24915374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_24891021_24894377_24894509_24897804_24897973_24899697_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986
transcript_69741.known	chr5	-	2364	6	FSM	ENSMUSG00000055235.12	ENSMUST00000068693.12	2364	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	2.85657137141714	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCCAGGATTTCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	24935725	24916735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_24917750_24917847_24917952_24920523_24920660_24922964_24923386_24927632_24927775_24935178
transcript_69744.known	chr5	-	768	4	FSM	ENSMUSG00000038135.5	ENSMUST00000047119.5	768	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	0.471404520791032	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGGCGGGCCTCGGAG	NA	False	NA	NA	False	AATAAA	-15	NA	24963006	24956000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_24956188_24959131_24959278_24961034_24961284_24962820
transcript_69746.nnic	chr5	-	406	2	NNC	ENSMUSG00000038135.5	novel	221	2	NA	NA	-797	1	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	0	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGGCGGGCCTCGGAGT	NA	False	NA	NA	False	AATAAA	-16	NA	24957119	24955999	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_24956188_24956901
transcript_69747.known	chr5	-	221	2	FSM	ENSMUSG00000038135.5	ENSMUST00000123386.2	221	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGGCGGGCCTCGGAG	NA	False	NA	NA	False	AATAAA	-15	NA	24956322	24956000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_24956188_24956288
transcript_69755.known	chr5	-	1784	8	FSM	ENSMUSG00000028945.10	ENSMUST00000030787.9	1784	8	0	0	0	0	multi-exon	FALSE	canonical	3	1533	junction_1	69.8271919433531	3218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCATCCTCCATCTCCTT	NA	False	NA	NA	False	NA	NA	NA	25047622	25007820	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_25008755_25011996_25012079_25012602_25012651_25012745_25012803_25013350_25013434_25018795_25018864_25022757_25022830_25047182
transcript_69757.nnic	chr5	-	1025	8	NNC	ENSMUSG00000028945.10	novel	1784	8	NA	NA	-23	419	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_7	560.802195110554	5746	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTGAGCTACTTGGTGT	NA	False	NA	-8	True	AATAAA	-18	NA	25047645	25008245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_25008755_25011996_25012079_25012602_25012651_25012745_25012803_25013350_25013434_25018795_25018864_25022757_25022830_25047539
transcript_6976.known	chr10	+	177	1	FSM	ENSMUSG00000083429.3	ENSMUST00000117283.3	177	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCTGTTCCCCTGCAAAT	3462	False	NA	-22	True	NA	NA	NA	42311884	42312061	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_42311900_42312100
transcript_69771.known	chr5	-	4046	3	FSM	ENSMUSG00000028945.10	ENSMUST00000154523.2	4046	3	0	0	0	0	multi-exon	FALSE	canonical	3	1592	junction_1	78.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAGAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	25047426	25015133	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_25018864_25022757_25022830_25047182
transcript_69772.known	chr5	-	3331	16	FSM	ENSMUSG00000028944.15	ENSMUST00000030784.14	3331	16	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_12	63.6806616381038	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTATGTATATGAGTAC	NA	False	NA	-5	True	AATAAA	-23	NA	25305640	25067741	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_25068886_25071076_25071171_25074128_25074276_25076052_25076091_25076491_25076658_25078881_25079009_25080158_25080214_25081986_25082033_25083702_25083762_25085681_25085764_25094079_25094184_25113320_25113391_25152421_25152637_25226789_25227070_25233462_25233535_25305008
transcript_69774.known	chr5	-	2205	12	FSM	ENSMUSG00000028944.15	ENSMUST00000114975.8	2205	12	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	21.3386701313649	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTTTTTATGTATATGA	NA	False	NA	-9	True	AATAAA	-19	NA	25113467	25067745	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_25068886_25071076_25071171_25074128_25074276_25076052_25076091_25076491_25076658_25078881_25079009_25080158_25080214_25081986_25082033_25083702_25083762_25085681_25085764_25094079_25094184_25113320
transcript_6978.known	chr10	+	1401	4	FSM	ENSMUSG00000019804.13	ENSMUST00000019939.12	1401	4	0	0	0	0	multi-exon	FALSE	canonical	3	2006	junction_3	141.176800108548	10747	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGTGTGCTCTGGTTGC	NA	False	NA	12	True	AATAAA	-13	NA	42378026	42411366	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_42378489_42401949_42402046_42409144_42409270_42410648
transcript_69782.known	chr5	-	890	10	FSM	ENSMUSG00000028944.15	ENSMUST00000150135.8	890	10	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_9	41.6092938336297	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATAACTTGGACATCACAG	NA	False	NA	NA	False	NA	NA	NA	25113507	25074252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_25074276_25076052_25076091_25076491_25076658_25078881_25079009_25080158_25080214_25081986_25082033_25083702_25083762_25085681_25085764_25094079_25094187_25113320
transcript_69789.known	chr5	-	2010	5	FSM	ENSMUSG00000028944.15	ENSMUST00000139698.2	2010	5	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_4	24.6005589367396	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGTTGAGGCCACATT	NA	False	NA	NA	False	AATAAA	-9	NA	25113450	25080397	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_25082033_25083702_25083762_25085681_25085764_25094079_25094184_25113320
transcript_69790.known	chr5	-	458	2	FSM	ENSMUSG00000028944.15	ENSMUST00000148531.2	458	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTATTCAGAGACGTACAT	NA	False	NA	NA	False	NA	NA	NA	25113448	25111228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_25111559_25113320
transcript_69793.known	chr5	+	2025	1	FSM	ENSMUSG00000043833.7	ENSMUST00000171190.2	2025	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTATCTTTTGGAGTAC	NA	False	NA	NA	False	TTTAAA	-7	NA	25305980	25308005	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_25306000_25308000
transcript_69796.known	chr5	+	2552	12	FSM	ENSMUSG00000038072.15	ENSMUST00000045737.14	2552	12	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_8	26.0711042984152	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGACTCTTCTATCTCT	NA	False	NA	13	True	AATAAA	-27	NA	25427879	25470916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_25428030_25452451_25452785_25453833_25453958_25455084_25455252_25457021_25457148_25459904_25460155_25462390_25462509_25463809_25463963_25466932_25467152_25468377_25468483_25469959_25470098_25470247
transcript_69799.known	chr5	+	1454	1	FSM	ENSMUSG00000101856.2	ENSMUST00000188465.2	1454	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTCTCTGGTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	25735010	25736464	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_25735000_25736500
transcript_698.known	SIRV7	-	889	6	FSM	SIRV7A	SIRV708	889	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1573.00102987887	1321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATCCTAAGAGATCGAC	NA	False	NA	NA	False	NA	NA	NA	147957	56037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV7_-_56098_70883_70988_78841_78909_78928_78964_114686_114961_147608
transcript_69801.nnic	chr5	-	1237	4	Antisense	novelGene_ENSMUSG00000106144.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.942809041582063	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCCAGTTTGTTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	25877218	25787355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr5_-_25787724_25872374_25872985_25875833_25875919_25877044
transcript_69805.known	chr5	-	3247	3	FSM	ENSMUSG00000028933.12	ENSMUST00000030773.12	3247	3	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	2.5	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTATATTTCATATTTTC	NA	False	NA	-12	True	AATACA	-11	NA	25910823	25894809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_25897827_25903248_25903331_25910675
transcript_69810.known	chr5	+	1712	12	FSM	ENSMUSG00000056367.15	ENSMUST00000088244.6	1712	12	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_4	20.0016528242663	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATGTTTATATTTCCTAT	NA	False	NA	NA	False	AATAAA	-24	NA	25965023	26055340	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_25965127_26003443_26003500_26014782_26014908_26016914_26017026_26027402_26027499_26030105_26030214_26034523_26034668_26036608_26036783_26037383_26037477_26053359_26053486_26054070_26054155_26054848
transcript_69814.nnic	chr5	+	1981	11	NIC	ENSMUSG00000056367.15	novel	1712	12	NA	NA	-38	0	combination_of_known_splicesites	TRUE	canonical	3	16	junction_6	37.7095478625772	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGTTCCTTGTGGTCTC	NA	False	NA	10	True	AATAAA	-18	NA	25964956	26055686	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_25965127_26003443_26003500_26014782_26014908_26016914_26017026_26027402_26027499_26030105_26030214_26036608_26036783_26037383_26037477_26053359_26053486_26054070_26054155_26054848
transcript_69815.known	chr5	+	2031	11	FSM	ENSMUSG00000056367.15	ENSMUST00000128727.8	2031	11	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	35.2080956599473	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGTTCCTTGTGGTCTC	NA	False	NA	10	True	AATAAA	-18	NA	25964994	26055686	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_25965127_26014782_26014908_26016914_26017026_26027402_26027499_26030105_26030214_26034523_26034668_26036608_26036783_26037383_26037477_26053359_26053486_26054070_26054155_26054848
transcript_69819.known	chr5	+	428	2	FSM	ENSMUSG00000056367.15	ENSMUST00000198693.2	428	2	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	0	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCTTGTTATCCCCCTGG	NA	False	NA	NA	False	NA	NA	NA	25965036	25982338	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_25965127_25982000
transcript_69822.known	chr5	-	5850	21	FSM	ENSMUSG00000002221.12	ENSMUST00000002291.12	5850	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	176.542771021642	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGCCTGTTCTCACAATT	NA	False	NA	NA	False	AATAAA	-43	NA	27996548	27945077	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_27947502_27949112_27949174_27949254_27949331_27949418_27949554_27953811_27953913_27955960_27956130_27957741_27957845_27959482_27959554_27961950_27961995_27963428_27963614_27964367_27964490_27964970_27965109_27966574_27966671_27970135_27970231_27970588_27971289_27977001_27977623_27980563_27980678_27986419_27986484_27988727_27988772_27993640_27993776_27996196
transcript_69826.known	chr5	+	2697	5	FSM	ENSMUSG00000045294.12	ENSMUST00000059155.11	2697	5	0	0	0	0	multi-exon	FALSE	canonical	3	1125	junction_2	41.7215471908701	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTGTATTCCTGAGGTT	NA	False	NA	14	True	ATTAAA	-13	NA	28276360	28283660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_28276794_28278544_28278670_28279479_28279647_28280059_28280160_28281788
transcript_69831.nnic	chr5	+	865	2	NNC	ENSMUSG00000039095.9	novel	3539	2	NA	NA	2456	-1332	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGCTGAAGTCCAAAGATT	57	False	NA	NA	False	AAGAAA	-16	NA	28373147	28375832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_28373297_28375116
transcript_69835.nnic	chr5	-	2151	4	NNC	ENSMUSG00000044681.20	novel	1984	3	NA	NA	15	3	intron_retention	FALSE	canonical	1	1	junction_1	83.9100047008036	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAACTTGCATGAATAAC	NA	False	NA	-3	True	ATTAAA	-20	NA	28415005	28407443	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_28408435_28409427_28409607_28412284_28412382_28414121
transcript_69840.known	chr5	-	1984	3	FSM	ENSMUSG00000044681.20	ENSMUST00000118882.2	1984	3	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_1	2	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTGAAACTTGCATGAAT	NA	False	NA	-6	True	ATTAAA	-17	NA	28415020	28407446	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_28408435_28412284_28412382_28414121
transcript_69847.known	chr5	+	1600	10	FSM	ENSMUSG00000029130.13	ENSMUST00000001247.12	1600	10	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	13.0421917418852	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGTAGCTAGTGTCTGA	NA	False	NA	89	True	AATAAA	-19	NA	29400994	29430520	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_29401111_29401577_29401644_29402923_29403019_29403571_29403837_29408052_29408196_29410666_29410700_29411171_29411297_29411693_29411803_29429114_29429283_29430040
transcript_6985.known	chr10	+	753	4	FSM	ENSMUSG00000019804.13	ENSMUST00000105500.8	753	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	983.423950626924	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTAATGATTCATCCGCAC	NA	False	NA	NA	False	NA	NA	NA	42378025	42410783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_42378423_42401949_42402046_42409144_42409270_42410648
transcript_69850.known	chr5	+	1565	10	FSM	ENSMUSG00000029130.13	ENSMUST00000160246.8	1565	10	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	13.0421917418852	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTAGCTAGTGTCTGACC	NA	False	NA	91	True	AATAAA	-21	NA	29401003	29430522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_29401083_29401577_29401644_29402923_29403019_29403571_29403837_29408052_29408196_29410666_29410700_29411171_29411297_29411693_29411803_29429114_29429283_29430040
transcript_69855.nnic	chr5	+	1487	9	NIC	ENSMUSG00000029130.13	novel	1565	10	NA	NA	-17	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_1	11.1242977306435	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATTTAGTTACTTAAAAT	NA	False	NA	48	True	ATTAAA	-19	NA	29400972	29430479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_29401083_29402923_29403019_29403571_29403837_29408052_29408196_29410666_29410700_29411171_29411297_29411693_29411803_29429114_29429283_29430040
transcript_69860.nic	chr5	+	1495	9	NIC	ENSMUSG00000029130.13	novel	1600	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	12.7646974112197	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATTTAGTTACTTAAAAT	NA	False	NA	48	True	ATTAAA	-19	NA	29400992	29430479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_29401111_29402923_29403019_29403571_29403837_29408052_29408196_29410666_29410700_29411171_29411297_29411693_29411803_29429114_29429283_29430040
transcript_69875.nnic	chr5	+	1186	6	NIC	ENSMUSG00000029130.13	novel	1295	8	NA	NA	-17	0	combination_of_known_splicesites	TRUE	canonical	2	3	junction_3	17.765134392962	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATTTAGTTACTTAAAAT	NA	False	NA	48	True	ATTAAA	-19	NA	29400972	29430479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_29401083_29402923_29403019_29403571_29403837_29411693_29411803_29429114_29429283_29430040
transcript_6988.known	chr10	+	1057	3	FSM	ENSMUSG00000019804.13	ENSMUST00000105499.2	1057	3	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_1	903	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGTTGCACGGCCTCCAG	NA	False	NA	23	True	AATAAA	-24	NA	42378285	42411377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_42378489_42409144_42409270_42410648
transcript_69882.known	chr5	-	2274	17	FSM	ENSMUSG00000010721.16	ENSMUST00000198105.5	2274	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	14.3830140704235	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCACTCTGTGCTTGTTGT	NA	False	NA	NA	False	TTTAAA	-20	NA	29583382	29437370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_29438147_29439975_29440138_29457740_29457808_29459239_29459331_29459543_29459618_29463055_29463134_29463676_29463754_29468392_29468474_29492388_29492462_29496270_29496336_29497149_29497219_29497820_29497948_29528799_29528823_29551764_29551905_29566045_29566086_29568880_29568954_29583124
transcript_69884.nnic	chr5	+	2576	11	NNC	ENSMUSG00000001569.11	novel	9219	11	NA	NA	13	5121	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_4	52.8295371927485	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACATGGTGGCACGTGTCT	2972	False	NA	5	True	TTTAAA	-7	NA	29639674	29656474	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_29640642_29640927_29641056_29642594_29642791_29644823_29644885_29646328_29646440_29647491_29647660_29648347_29648470_29651236_29651370_29651811_29651944_29654579_29654690_29656026
transcript_69886.known	chr5	+	9219	11	FSM	ENSMUSG00000001569.11	ENSMUST00000001611.11	9219	11	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_8	15.8962259671911	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATAGAAAAGACTGC	2959	False	NA	NA	False	NA	NA	NA	29639661	29662841	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_29640642_29640927_29641056_29642594_29642791_29644823_29645148_29646328_29646440_29647491_29647660_29648347_29648470_29651236_29651370_29651811_29651944_29654579_29654690_29656026
transcript_6989.known	chr10	+	3006	6	FSM	ENSMUSG00000038280.13	ENSMUST00000040718.6	3006	6	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_2	7.54718490564528	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTAATGTTGTAATTGAAT	NA	False	NA	9	True	AATAAA	-18	NA	42554911	42578455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_42555394_42559155_42559271_42568906_42569005_42572245_42572414_42574103_42574270_42576478
transcript_69890.nnic	chr5	+	474	2	Genic_Genomic	ENSMUSG00000078182.5	novel	357	1	NA	NA	-54	188	multi-exon	FALSE	canonical	0	0	junction_1	0	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATAATCTTAAGAAATTCTG	6641	False	NA	4	True	AATAAA	-28	NA	29743096	29743695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr5_+_29743301_29743425
transcript_69900.known	chr5	+	1605	8	FSM	ENSMUSG00000029131.15	ENSMUST00000114839.8	1605	8	0	0	0	0	multi-exon	FALSE	canonical	3	1788	junction_5	99.4337026590572	4582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTTCTTGTGTCTGTGTG	4546	False	NA	42	True	AATAAA	-42	NA	29940937	29972101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322
transcript_69901.known	chr5	+	1024	7	FSM	ENSMUSG00000029131.15	ENSMUST00000012734.10	1024	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	922.805580222015	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTTGTATTTGGTCAGA	4601	False	NA	13	True	AATAAA	-21	NA	29940992	29962967	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29961231_29961337_29962545
transcript_69902.known	chr5	+	2918	10	FSM	ENSMUSG00000029131.15	ENSMUST00000008733.15	2918	10	0	0	0	0	multi-exon	FALSE	canonical	3	618	junction_9	548.115559591832	913	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTGTGTGTGTATGTGC	4294	False	NA	33	True	AATAAA	-44	NA	29940685	29991476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322_29971394_29986127_29986449_29990028
transcript_69903.known	chr5	+	847	4	FSM	ENSMUSG00000029131.15	ENSMUST00000140376.2	847	4	0	0	0	0	multi-exon	FALSE	canonical	3	694	junction_3	589.11685315111	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTGTATGGAGTATATT	NA	False	NA	NA	False	ATTAAA	-19	NA	29969472	29986705	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_29969529_29970503_29970646_29971322_29971394_29986127
transcript_6991.known	chr10	-	1918	2	FSM	ENSMUSG00000111293.2	ENSMUST00000216467.2	1918	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTATCTATGACTGGTAC	NA	False	NA	NA	False	NA	NA	NA	42740677	42737425	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_42738653_42739986
transcript_69910.known	chr5	-	3884	8	FSM	ENSMUSG00000025747.13	ENSMUST00000141630.8	3884	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_5	887.115366493777	297	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30278579	30263199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_30266132_30266965_30267048_30268233_30268410_30269082_30269185_30273463_30273639_30274831_30274954_30276631_30276706_30278358
transcript_69911.known	chr5	+	2249	2	FSM	ENSMUSG00000104667.2	ENSMUST00000197982.2	2249	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTGCTCTGGAGCACCA	NA	False	NA	NA	False	AATAAA	-14	NA	30297937	30302684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_30298047_30300544
transcript_69912.known	chr5	-	2552	20	FSM	ENSMUSG00000025745.13	ENSMUST00000026843.12	2552	20	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	102.267992951223	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTGGCCTGTTTTCTTCT	NA	False	NA	-3	True	AATAAA	-23	NA	30359974	30324423	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_30324959_30325042_30325064_30325717_30325801_30326335_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331562_30331735_30333797_30333933_30334818_30334929_30337237_30337295_30339055_30339175_30339976_30340100_30345946_30346050_30347716_30347837_30349156_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
transcript_69915.known	chr5	-	4017	20	FSM	ENSMUSG00000025745.13	ENSMUST00000156859.3	4017	20	0	0	0	0	multi-exon	FALSE	canonical	3	340	junction_11	40.0253382350609	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGGCACAGCCTAGGTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	30360160	30323301	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_30324959_30325042_30325189_30325685_30325801_30326335_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331562_30331735_30333797_30333933_30334818_30334929_30337237_30337295_30339055_30339175_30339976_30340100_30345946_30346050_30347716_30347837_30349156_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
transcript_6992.known	chr10	+	2127	8	FSM	ENSMUSG00000038240.14	ENSMUST00000095725.11	2127	8	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_4	6.25316246521123	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAAAGTGTCTGCCTTTC	NA	False	NA	NA	False	ATTAAA	-28	NA	43097481	43316598	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_43098057_43174794_43174930_43221523_43221723_43248130_43248206_43269866_43270041_43271556_43271689_43289510_43289544_43315794
transcript_69920.known	chr5	-	1755	9	FSM	ENSMUSG00000025745.13	ENSMUST00000130358.2	1755	9	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_2	32.7335359379337	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATTAATGCCAGG	NA	False	NA	NA	False	TATAAA	-6	NA	30359960	30338232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_30339175_30339976_30340100_30345946_30346050_30347716_30347837_30349156_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
transcript_69923.known	chr5	+	3865	6	FSM	ENSMUSG00000044576.7	ENSMUST00000058045.5	3865	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.83303027798234	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCCCTGGGTGTTGGCTGA	NA	False	NA	NA	False	AATAAA	-29	NA	30310158	30323376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_30310402_30313249_30313391_30318281_30318413_30318923_30319986_30320884_30321055_30321258
transcript_69924.known	chr5	-	1069	1	FSM	ENSMUSG00000025745.13	ENSMUST00000196156.2	1069	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30359988	30358919	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_30358900_30360000
transcript_69926.known	chr5	+	2033	16	FSM	ENSMUSG00000059447.14	ENSMUST00000026841.15	2033	16	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_6	59.1301389591918	1254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTAGTCTCGTTATTAGTGG	NA	False	NA	10	True	AATAAA	-25	NA	30360245	30389591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_30360338_30368666_30368742_30369023_30369069_30371662_30371763_30373521_30373567_30374493_30374594_30377623_30377712_30378807_30378996_30379788_30379970_30381885_30382008_30383637_30383718_30383794_30383843_30384549_30384638_30385312_30385388_30385918_30386084_30389050
transcript_69931.known	chr5	+	2045	16	FSM	ENSMUSG00000059447.14	ENSMUST00000114783.6	2045	16	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	145.866361974088	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGACTGTTCGTAGTCTC	NA	False	NA	-1	True	AATAAA	-14	NA	30360269	30389580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_30360385_30368666_30368742_30369023_30369069_30371662_30371763_30373521_30373567_30374493_30374594_30377623_30377712_30378807_30378996_30379788_30379970_30381885_30382008_30383637_30383718_30383794_30383843_30384549_30384638_30385312_30385388_30385918_30386084_30389050
transcript_69932.known	chr5	+	2048	16	FSM	ENSMUSG00000059447.14	ENSMUST00000114786.8	2048	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	146.097988426337	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCGTAGTCTCGTTATTA	NA	False	NA	6	True	AATAAA	-21	NA	30360269	30389587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_30360381_30368666_30368742_30369023_30369069_30371662_30371763_30373521_30373567_30374493_30374594_30377623_30377712_30378807_30378996_30379788_30379970_30381885_30382008_30383637_30383718_30383794_30383843_30384549_30384638_30385312_30385388_30385918_30386084_30389050
transcript_69935.known	chr5	-	3099	14	FSM	ENSMUSG00000067642.12	ENSMUST00000088117.11	3099	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_4	2.4973358585766	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAAGAGGTCATTTACTAA	NA	False	NA	NA	False	AATAAA	-20	NA	30410720	30398428	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_30398560_30400040_30400097_30400494_30400558_30400647_30400690_30401236_30402614_30403360_30403538_30404014_30404212_30404395_30404540_30405437_30405645_30407236_30407456_30407954_30408132_30408484_30408626_30409338_30409400_30410613
transcript_6994.nic	chr10	+	2122	7	NIC	ENSMUSG00000038240.14	novel	2127	8	NA	NA	-21	7	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	27.3536509852382	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGCCTTTCTTTCTTA	NA	False	NA	NA	False	ATTAAA	-35	NA	43097460	43316605	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_+_43098057_43174794_43174930_43221523_43221723_43248130_43248206_43269866_43270041_43271556_43271689_43315794
transcript_69941.known	chr5	-	426	4	FSM	ENSMUSG00000067642.12	ENSMUST00000125367.4	426	4	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	3.2659863237109	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAACAAAAGAGGTCATTTA	6670	False	NA	NA	False	AATAAA	-16	NA	30401416	30398432	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_30398560_30400040_30400097_30400494_30400558_30401236
transcript_69943.known	chr5	+	6803	10	FSM	ENSMUSG00000075703.17	ENSMUST00000145167.9	6803	10	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_3	10.5725010181025	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATTGTTTTCAAGTTGT	NA	False	NA	NA	False	AATAAA	-23	NA	30437578	30477425	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_30437814_30452460_30452530_30453409_30453519_30457707_30457783_30461075_30461339_30462709_30462819_30468068_30468118_30469272_30469454_30470335_30470522_30471898
transcript_69945.known	chr5	-	769	7	FSM	ENSMUSG00000053194.3	ENSMUST00000065486.3	769	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGACCCACTGCTTTCTG	NA	False	NA	NA	False	AGTAAA	-16	NA	30703180	30642926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_30643112_30644788_30644878_30645828_30645939_30655375_30655518_30691533_30691631_30702009_30702045_30703069
transcript_69947.known	chr5	+	3088	6	FSM	ENSMUSG00000029175.18	ENSMUST00000062962.12	3088	6	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_4	8.49470423263812	222	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGACATTTTTTTAAATGAA	6678	False	NA	54	True	AATAAA	-14	NA	30805276	30817073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_30805443_30812091_30812165_30812838_30813011_30813231_30813445_30814090_30814202_30814720
transcript_69953.known	chr5	+	1007	7	FSM	ENSMUSG00000029177.10	ENSMUST00000134846.8	1007	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	786.091474038204	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTTTGCATCTTTTACT	9201	False	NA	11	True	NA	NA	NA	30824255	30831659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_30824458_30826342_30826397_30827035_30827173_30829807_30829915_30830325_30830404_30830636_30830788_30831381
transcript_69964.known	chr5	+	1031	6	FSM	ENSMUSG00000029177.10	ENSMUST00000133316.8	1031	6	0	0	0	0	multi-exon	FALSE	canonical	3	531	junction_2	579.285905231605	1292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATAAAGCGCTTGAATCT	9186	False	NA	9	True	AATATA	-14	NA	30824240	30831722	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_30824458_30827035_30827173_30829807_30829915_30830325_30830404_30830636_30830788_30831381
transcript_69977.known	chr5	+	827	5	FSM	ENSMUSG00000029177.10	ENSMUST00000199617.2	827	5	0	0	0	0	multi-exon	TRUE	canonical	3	33	junction_3	705.72033235553	473	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCTTGAATCTGTTGTATG	9287	False	NA	17	True	AATAAA	-1	NA	30824341	30831730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_30824458_30829807_30829915_30830325_30830404_30830610_30830788_30831381
transcript_69978.known	chr5	+	1466	5	FSM	ENSMUSG00000029177.10	ENSMUST00000144742.6	1466	5	0	0	0	0	multi-exon	FALSE	canonical	3	1270	junction_1	201.219407612685	2543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAGTAAAGTTACTGTAA	9066	False	NA	NA	False	AATGAA	-5	NA	30824120	30832174	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_30824458_30829807_30829915_30830325_30830404_30830636_30830788_30831381
transcript_69979.known	chr5	+	1120	4	FSM	ENSMUSG00000029177.10	ENSMUST00000150810.8	1120	4	0	0	0	0	multi-exon	FALSE	canonical	3	1270	junction_1	232.020592955788	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTGGCAGTCCCGCCATA	9224	False	NA	40	True	AATAAA	-24	NA	30824278	30831753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_30824458_30829807_30829915_30830325_30830788_30831381
transcript_6998.nnic	chr10	+	1842	6	NIC	ENSMUSG00000038240.14	novel	2127	8	NA	NA	-21	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_4	28.8679753360017	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAAAGTGTCTGCCTTTC	NA	False	NA	NA	False	ATTAAA	-28	NA	43097460	43316598	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_+_43098057_43174794_43174930_43221523_43221723_43248130_43248206_43289510_43289544_43315794
transcript_69980.known	chr5	+	5191	13	FSM	ENSMUSG00000029168.15	ENSMUST00000114729.8	5191	13	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_9	9.12718771339538	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTTGTGTTTTTTCAAG	NA	False	NA	11	True	ATTAAA	-23	NA	30868907	30956719	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_30869347_30902565_30902831_30934663_30934823_30935318_30935499_30936211_30936281_30938822_30938868_30940538_30940615_30941654_30941812_30946042_30946185_30948835_30948979_30949463_30949672_30951277_30951447_30953580
transcript_69982.nic	chr5	+	1427	9	NIC	ENSMUSG00000029168.15	novel	5191	13	NA	NA	-37	98	combination_of_known_junctions	FALSE	canonical	3	11	junction_8	19.6050854372023	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGTCCCTTATTTTATA	NA	False	NA	4	True	AATAAA	-13	NA	30869200	30944376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_30869347_30902565_30902831_30934663_30934823_30935318_30935499_30936211_30936281_30938822_30938868_30940538_30940615_30941654_30941812_30944046
transcript_69983.known	chr5	+	1816	7	FSM	ENSMUSG00000029166.15	ENSMUST00000200692.4	1816	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	4.56131072780134	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGATTTCCTCAATTGA	2319	False	NA	13	True	AATAAA	-13	NA	30972097	31023403	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_30972243_31019150_31019279_31019841_31019988_31020547_31020705_31021917_31022073_31022158_31022312_31022471
transcript_69984.known	chr5	+	2021	7	FSM	ENSMUSG00000029166.15	ENSMUST00000031058.15	2021	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_4	5.53774924194538	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTCTGTCTTTTGTAAG	2206	False	NA	60	True	NA	NA	NA	30971984	31023450	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_30972243_31019150_31019279_31019841_31019988_31020547_31020750_31021917_31022073_31022158_31022312_31022471
transcript_69986.known	chr5	+	6110	17	FSM	ENSMUSG00000038828.14	ENSMUST00000201203.4	6110	17	0	0	0	0	multi-exon	TRUE	canonical	3	358	junction_2	22.5422346662881	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGGGCTCATACCTGCA	NA	False	NA	NA	False	GATAAA	-13	NA	31025355	31036524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31027163_31027932_31028133_31028763_31028915_31029064_31029200_31029415_31029499_31029844_31029951_31030030_31030113_31030386_31030489_31030838_31030981_31031299_31031392_31031656_31031706_31031880_31031995_31032194_31032313_31033133_31033231_31033390_31033560_31033706_31033853_31034007
transcript_6999.nnic	chr10	+	1454	5	NNC	ENSMUSG00000038240.14	novel	4075	8	NA	NA	-21	-22293	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	32.5614803103299	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTGTTTGCTGGGCAT	NA	False	NA	NA	False	AATAAA	-15	NA	43097460	43259098	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_43098057_43174794_43174930_43221523_43221723_43248130_43248206_43258649
transcript_69990.nic	chr5	+	787	2	ISM	ENSMUSG00000038828.14	ENSMUST00000114716.4	2220	16	-52	5909	-52	-350	5prime_fragment	FALSE	canonical	3	425	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAGAAAAGAAAAGCTGG	NA	False	NA	NA	False	NA	NA	NA	31026922	31028479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_31027163_31027932
transcript_69991.known	chr5	-	1144	3	FSM	ENSMUSG00000038803.8	ENSMUST00000132253.5	1144	3	0	0	0	0	multi-exon	FALSE	canonical	3	823	junction_2	132.5	3258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGAAAGTGCATTTAGTC	NA	False	NA	NA	False	AATAAA	-19	NA	31065132	31063228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_31064111_31064742_31064881_31065008
transcript_69992.known	chr5	-	576	2	FSM	ENSMUSG00000038803.8	ENSMUST00000132034.5	576	2	0	0	0	0	multi-exon	FALSE	canonical	3	1088	junction_1	0	1646	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTTTGTGGTCCCAAA	NA	False	NA	-5	True	NA	NA	NA	31065069	31063861	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_31064111_31064742
transcript_69993.nic	chr5	+	1497	8	NIC	ENSMUSG00000029162.16	novel	1257	9	NA	NA	-76	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	9.11379309013519	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTTGTCTGTCTGTCTGT	1066	False	NA	6	True	AATAAA	-15	NA	31078857	31088589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_31079352_31082082_31082200_31084031_31084167_31085786_31085860_31086864_31087012_31087891_31087981_31088059_31088218_31088305
transcript_69996.known	chr5	+	1087	7	FSM	ENSMUSG00000029162.16	ENSMUST00000201571.4	1087	7	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	5.24933858267454	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGCAAGCGGCACCAGCT	1142	False	NA	NA	False	NA	NA	NA	31078933	31088390	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31079352_31082082_31082200_31085786_31085860_31086864_31087012_31087891_31087981_31088059_31088218_31088305
transcript_69999.nnic	chr5	+	879	6	NNC	ENSMUSG00000029162.16	novel	544	2	NA	NA	-2454	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	10.4804580052591	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTTGTCTGTCTGTCTGT	7712	False	NA	6	True	AATAAA	-15	NA	31085503	31088589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_31085632_31085786_31085860_31086864_31087012_31087891_31087981_31088059_31088218_31088305
transcript_7.known	ERCC-00013	+	792	1	FSM	ERCC-00013A	EF011062	792	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	792	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00013_+_0_800
transcript_70.known	ERCC-00147	+	1007	1	FSM	ERCC-00147A	DQ516790	1007	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	ATTAAA	-14	NA	0	1007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00147_+_0_1000
transcript_70000.known	chr5	-	1442	6	FSM	ENSMUSG00000029161.9	ENSMUST00000031051.9	1442	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	4.51663591625449	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGTCCTTGGTCCAG	5296	False	NA	1	True	AATAAA	-25	NA	31102935	31090486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_31091333_31091503_31091626_31091722_31091794_31091886_31091953_31093221_31093325_31102701
transcript_70004.known	chr5	+	1352	9	FSM	ENSMUSG00000006638.16	ENSMUST00000201125.4	1352	9	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_5	7.48331477354788	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGCTGAGGTTCCCTTTCC	NA	False	NA	19	True	ATTAAA	-21	NA	31107409	31112435	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31107593_31110228_31110390_31110686_31110870_31111010_31111057_31111222_31111336_31111434_31111610_31111748_31111798_31111877_31112044_31112159
transcript_70014.nnic	chr5	+	1213	8	NIC	ENSMUSG00000006638.16	novel	1352	9	NA	NA	-22	0	intron_retention	FALSE	canonical	3	6	junction_1	24.272265183597	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGCTGAGGTTCCCTTTCC	NA	False	NA	19	True	ATTAAA	-21	NA	31107387	31112435	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_31107593_31110686_31110870_31111010_31111057_31111222_31111336_31111434_31111610_31111748_31111798_31111877_31112044_31112159
transcript_70024.known	chr5	-	1869	8	FSM	ENSMUSG00000045302.14	ENSMUST00000202567.2	1869	8	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_1	89.9026684582742	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCAGCAGTCCTCTTGTC	NA	False	NA	-8	True	AATAAA	-21	NA	31117624	31112386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_31113082_31113605_31113679_31115231_31115406_31115576_31115702_31115814_31115896_31116059_31116281_31116566_31116757_31117314
transcript_70025.known	chr5	-	756	2	FSM	ENSMUSG00000045302.14	ENSMUST00000202445.2	756	2	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTCCAAGGAGCAGGGAC	NA	False	NA	NA	False	NA	NA	NA	31117596	31116282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_31116757_31117314
transcript_70026.known	chr5	+	4116	3	FSM	ENSMUSG00000006642.4	ENSMUST00000006818.4	4116	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTGCTGACATTATTACT	9281	False	NA	NA	False	NA	NA	NA	31126005	31134362	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31126342_31127418_31127662_31130825
transcript_70029.known	chr5	-	3436	18	FSM	ENSMUSG00000006641.13	ENSMUST00000114668.7	3436	18	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_17	28.8754634169437	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGGCCTCTGTGTTCCT	250	False	NA	-1	True	AATAAA	-19	NA	31205906	31193379	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195237_31195357_31195445_31196285_31196354_31196647_31196761_31197097_31197187_31197705_31197836_31198001_31198143_31198487_31198643_31198887_31198956_31199481_31199534_31199922_31199989_31200293_31200804_31201856_31201936_31204973_31205144_31205515
transcript_70030.known	chr5	-	3218	18	FSM	ENSMUSG00000006641.13	ENSMUST00000080431.8	3218	18	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_17	31.4360998487793	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGGCCTCTGTGTTCCT	NA	False	NA	-1	True	AATAAA	-19	NA	31206268	31193379	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195237_31195357_31195445_31196285_31196354_31196647_31196761_31197097_31197187_31197705_31197836_31198001_31198143_31198487_31198643_31198887_31198956_31199481_31199534_31199922_31199989_31200293_31200804_31201856_31201936_31204973_31205144_31206095
transcript_70037.known	chr5	+	840	7	FSM	ENSMUSG00000013622.16	ENSMUST00000200942.2	840	7	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	101.141402666432	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAATGCTGCCGTACCTGT	932	False	NA	7	True	AATAAA	-20	NA	31206002	31211962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31206101_31206805_31206828_31209540_31209613_31209805_31209878_31210106_31210229_31211304_31211403_31211606
transcript_70041.known	chr5	+	966	7	FSM	ENSMUSG00000013622.16	ENSMUST00000013766.13	966	7	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_6	22.1108319357027	1655	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCCGTACCTGTGCGTG	908	False	NA	12	True	AATAAA	-25	NA	31205978	31211967	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31206101_31206805_31206925_31209540_31209613_31209805_31209878_31210106_31210229_31211304_31211403_31211606
transcript_70042.known	chr5	+	548	7	FSM	ENSMUSG00000013622.16	ENSMUST00000200748.4	548	7	0	0	0	0	multi-exon	FALSE	canonical	2	19	junction_6	104.663614605183	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCGGAAAGCCAAGGCTTCA	995	False	NA	NA	False	NA	NA	NA	31206065	31211688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31206101_31206805_31206925_31209540_31209613_31209805_31209878_31210106_31210229_31211304_31211403_31211658
transcript_70047.known	chr5	+	894	7	FSM	ENSMUSG00000013622.16	ENSMUST00000201136.2	894	7	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	108.191830663051	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCGCACCCTCATCTATC	1058	False	NA	NA	False	NA	NA	NA	31206128	31211737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31206409_31206805_31206925_31209540_31209613_31209805_31209878_31210106_31210229_31211304_31211403_31211606
transcript_7005.known	chr10	+	1671	3	FSM	ENSMUSG00000038240.14	ENSMUST00000160108.8	1671	3	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	2.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATATATCAGAATATTAA	NA	False	NA	NA	False	AATAAA	-18	NA	43097512	43222515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_43098057_43174794_43174930_43221523
transcript_70061.known	chr5	+	1696	5	FSM	ENSMUSG00000013622.16	ENSMUST00000201887.4	1696	5	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_4	26.2202212042538	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAATGCTGCCGTACCTG	594	False	NA	6	True	AATAAA	-19	NA	31205664	31211961	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31206101_31206805_31206925_31209540_31210229_31211304_31211403_31211606
transcript_70065.known	chr5	-	3078	18	FSM	ENSMUSG00000006641.13	ENSMUST00000202556.4	3078	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	33.6216481587904	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCTGGCCTCTGTGTTCC	803	False	NA	-2	True	AATAAA	-18	NA	31205353	31193380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195237_31195357_31195445_31196285_31196354_31196647_31196761_31197097_31197187_31197705_31197836_31198001_31198143_31198487_31198643_31198887_31198956_31199481_31199534_31199922_31199989_31200293_31200804_31201856_31201926_31204973_31205144_31205309
transcript_70067.known	chr5	+	7137	44	FSM	ENSMUSG00000013629.17	ENSMUST00000013773.12	7137	44	0	0	0	0	multi-exon	TRUE	canonical	3	481	junction_6	136.90610173497	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGTTCGTCATGAGTACT	7053	False	NA	18	True	AATAAA	-14	NA	31212123	31235823	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31212381_31212586_31212727_31215412_31215543_31216020_31216164_31216324_31216467_31216776_31216949_31217122_31217309_31217442_31217556_31217824_31217971_31218171_31218304_31218460_31218695_31218800_31219023_31219121_31219311_31219544_31219670_31219805_31219937_31224031_31224145_31224324_31224570_31224743_31224991_31225449_31225549_31225706_31225932_31226017_31226201_31226358_31226578_31226862_31227031_31227638_31227822_31227911_31228017_31229208_31229449_31229645_31229728_31229900_31230068_31230161_31230327_31230485_31230618_31230834_31231037_31231341_31231533_31231613_31231755_31231937_31232040_31232432_31232530_31233152_31233198_31233298_31233469_31233561_31233637_31234017_31234231_31234436_31234563_31234694_31234851_31234938_31235041_31235232_31235328_31235436
transcript_70069.known	chr5	-	1989	9	FSM	ENSMUSG00000029151.15	ENSMUST00000202740.4	1989	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	11.1551557586616	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGCAGTCCAATTCCTC	NA	False	NA	0	True	AATAAA	-19	NA	31265581	31243449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_31244263_31245300_31245436_31245648_31245755_31245951_31246151_31246662_31246817_31246897_31247045_31247399_31247582_31251827_31251901_31265401
transcript_70070.known	chr5	-	2089	8	FSM	ENSMUSG00000029151.15	ENSMUST00000031037.14	2089	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	6.02037357305871	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGCAGTCCAATTCCTC	3744	False	NA	0	True	AATAAA	-19	NA	31250959	31243449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_31244263_31245300_31245436_31245648_31245755_31245951_31246151_31246662_31246817_31246897_31247045_31247399_31247582_31250606
transcript_70072.known	chr5	+	1565	6	FSM	ENSMUSG00000053856.8	ENSMUST00000066544.5	1565	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	5.93295878967653	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAGTGTGTGTGGGACCC	NA	False	NA	5	True	AATAAA	-17	NA	31265662	31269870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31265766_31266230_31266347_31266838_31267053_31267521_31267664_31268456_31268524_31268947
transcript_70075.known	chr5	+	670	5	FSM	ENSMUSG00000053856.8	ENSMUST00000202760.4	670	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	6.86931583201704	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTATCCACATGCGCTC	NA	False	NA	NA	False	NA	NA	NA	31265660	31269187	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31265766_31266230_31266347_31267521_31267664_31268456_31268524_31268947
transcript_70077.known	chr5	+	1408	9	FSM	ENSMUSG00000062077.15	ENSMUST00000202769.2	1408	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_8	7.84219357067906	137	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGGCTCCTTTTGCTGTCC	NA	False	NA	8	True	AATAAA	-21	NA	31274077	31294974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31274422_31288385_31288559_31289331_31289504_31291393_31291490_31293386_31293621_31294096_31294120_31294231_31294357_31294464_31294558_31294826
transcript_70078.known	chr5	-	504	2	FSM	ENSMUSG00000038676.7	ENSMUST00000043475.7	504	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGTGCAGCGCCGCCCAGA	NA	False	NA	NA	False	GGGGCT	-33	NA	31296173	31295406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_31295878_31296140
transcript_70079.known	chr5	-	4552	19	FSM	ENSMUSG00000106864.4	ENSMUST00000088010.12	4552	19	0	0	0	0	multi-exon	FALSE	canonical	3	356	junction_18	84.1706086352278	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGAGCTTGGCTTGTCCTG	NA	False	NA	-26	True	AATAAA	-19	NA	31337488	31313348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31337227
transcript_7008.known	chr10	-	75	1	FSM	ENSMUSG00000094955.3	ENSMUST00000178135.3	75	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	251	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCCTGCCGGTGCACCCA	NA	False	NA	NA	False	AAGAAA	-20	NA	43332497	43332422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_43332400_43332500
transcript_70083.known	chr5	-	878	8	FSM	ENSMUSG00000107283.4	ENSMUST00000200864.4	878	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_7	132.664376283514	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCACAAACATGTATATACCC	NA	False	NA	-72	True	NA	NA	NA	31311536	31298884	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_31299195_31302043_31302097_31302589_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311434
transcript_70092.known	chr5	-	1653	7	FSM	ENSMUSG00000107283.4	ENSMUST00000200744.4	1653	7	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	140.104722737434	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAGAATTGTGTCTTTA	NA	False	NA	NA	False	TTTAAA	-4	NA	31311566	31298006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_31299195_31302043_31302097_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311534
transcript_70093.known	chr5	-	903	8	FSM	ENSMUSG00000107283.4	ENSMUST00000202241.4	903	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	130.575335984048	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCCATGCTATGGGGTTG	NA	False	NA	11	True	NA	NA	NA	31311572	31298801	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_31299195_31302043_31302097_31302583_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311534
transcript_70094.known	chr5	-	923	7	FSM	ENSMUSG00000107283.4	ENSMUST00000201491.2	923	7	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_6	59.0705792534095	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGAGAGATGGTGCAGTGA	NA	False	NA	NA	False	NA	NA	NA	31311565	31301617	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_31302097_31302589_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311534
transcript_70100.known	chr5	-	1767	13	FSM	ENSMUSG00000029145.13	ENSMUST00000202758.4	1767	13	0	0	0	0	multi-exon	FALSE	canonical	1	12	junction_12	179.460688979199	960	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCATGACTCTGCTGCCT	NA	False	NA	-9	True	AATAAA	-15	NA	31350352	31344910	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925_31349970_31350163
transcript_70101.known	chr5	-	1878	13	FSM	ENSMUSG00000029145.13	ENSMUST00000166769.8	1878	13	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_12	174.191864205983	1122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTGCTGCCTTTGTATCT	NA	False	NA	-1	True	AATAAA	-23	NA	31350483	31344902	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925_31350115_31350336
transcript_70109.known	chr5	-	2228	4	FSM	ENSMUSG00000043059.17	ENSMUST00000114590.8	2228	4	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_2	5.79271573232759	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGTCTCTGCTGAATTG	NA	False	NA	-17	True	AATAAA	-16	NA	31359647	31356324	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_31357492_31357578_31358167_31358926_31359083_31359330
transcript_70111.known	chr5	-	2213	3	FSM	ENSMUSG00000043059.17	ENSMUST00000031562.11	2213	3	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_2	7	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCATGTCTCTGCTGAAT	NA	False	NA	-19	True	AATAAA	-14	NA	31359386	31356326	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_31357492_31357578_31358167_31358926
transcript_70112.known	chr5	-	2025	13	FSM	ENSMUSG00000029145.13	ENSMUST00000077693.10	2025	13	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_3	56.1372326436643	2691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCTGCCTTTGTATCTT	NA	False	NA	0	True	AATAAA	-24	NA	31350774	31344901	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925_31349970_31350336
transcript_70113.known	chr5	-	1966	12	FSM	ENSMUSG00000029145.13	ENSMUST00000114603.8	1966	12	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_3	55.8517814183514	761	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCCATGACTCTGCTGCC	NA	False	NA	-10	True	AATAAA	-14	NA	31350358	31344911	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925
transcript_70114.known	chr5	+	2018	15	FSM	ENSMUSG00000029146.15	ENSMUST00000031029.15	2018	15	0	0	0	0	multi-exon	TRUE	canonical	3	351	junction_8	24.4791664857432	1247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGGTTCCCTCTCACTG	NA	False	NA	21	True	ATTAAA	-21	NA	31350570	31356244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31350810_31351212_31351288_31352139_31352258_31352758_31352824_31353089_31353201_31353294_31353386_31353520_31353609_31353824_31353895_31354326_31354420_31354513_31354718_31354964_31355091_31355206_31355285_31355413_31355489_31355579_31355622_31355701
transcript_70115.known	chr5	+	2019	16	FSM	ENSMUSG00000029146.15	ENSMUST00000200730.4	2019	16	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_3	132.900564332888	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTACCTTTGGTTCCCTC	NA	False	NA	15	True	ATTAAA	-15	NA	31350637	31356238	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31350810_31351212_31351288_31352139_31352258_31352549_31352624_31352758_31352824_31353089_31353201_31353294_31353386_31353520_31353609_31353824_31353895_31354326_31354420_31354513_31354718_31354964_31355091_31355206_31355285_31355413_31355489_31355579_31355622_31355701
transcript_70116.known	chr5	-	2307	10	FSM	ENSMUSG00000029147.12	ENSMUST00000031032.11	2307	10	0	0	0	0	multi-exon	FALSE	canonical	3	595	junction_8	38.6382398699386	1125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTGCTCATAGTGTCCTGC	NA	False	NA	-5	True	ACTAAA	-18	NA	31378031	31360011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_31360629_31360915_31361019_31361373_31361504_31361796_31362032_31362341_31362474_31363381_31363798_31364906_31365040_31365356_31365443_31365730_31365801_31377646
transcript_70117.known	chr5	-	1797	1	FSM	ENSMUSG00000029147.12	ENSMUST00000200740.2	1797	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31377909	31376112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_31376100_31377900
transcript_70123.known	chr5	+	2203	18	FSM	ENSMUSG00000029148.16	ENSMUST00000031034.12	2203	18	0	0	0	0	multi-exon	FALSE	canonical	3	461	junction_13	30.9676692663879	590	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGTTGTGCTTGCGGC	NA	False	NA	33	True	AATAAA	-21	NA	31398207	31408910	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31398347_31401106_31401336_31401509_31401633_31401801_31401904_31402220_31402311_31402706_31402748_31403094_31403190_31404685_31404770_31405027_31405087_31405241_31405341_31406892_31407026_31407232_31407339_31407433_31407485_31407573_31407710_31407887_31407942_31408024_31408089_31408235_31408292_31408368
transcript_70140.known	chr5	+	902	7	FSM	ENSMUSG00000029149.15	ENSMUST00000201625.4	902	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	34.830143394607	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGATTACAGTTACTTG	NA	False	NA	9	True	AATAAA	-21	NA	31409065	31410546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31409159_31409262_31409448_31409535_31409596_31409708_31409916_31409998_31410134_31410238_31410352_31410437
transcript_70143.nic	chr5	+	1074	6	NIC	ENSMUSG00000029149.15	novel	902	7	NA	NA	-37	0	intron_retention	FALSE	canonical	1	1	junction_5	37.992630864419	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGATTACAGTTACTTG	NA	False	NA	9	True	AATAAA	-21	NA	31408997	31410546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_31409448_31409535_31409596_31409708_31409916_31409998_31410134_31410238_31410352_31410437
transcript_70146.nic	chr5	+	1046	6	NIC	ENSMUSG00000029149.15	novel	902	7	NA	NA	-30	0	intron_retention	FALSE	canonical	1	1	junction_5	37.9610326519182	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGATTACAGTTACTTG	NA	False	NA	9	True	AATAAA	-21	NA	31409004	31410546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_31409159_31409262_31409448_31409535_31409596_31409708_31410134_31410238_31410352_31410437
transcript_70151.nic	chr5	+	1157	5	NIC	ENSMUSG00000029149.15	novel	902	7	NA	NA	-37	0	intron_retention	FALSE	canonical	1	1	junction_4	42.3261148701366	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGATTACAGTTACTTG	NA	False	NA	9	True	AATAAA	-21	NA	31408997	31410546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_31409448_31409535_31409596_31409708_31410134_31410238_31410352_31410437
transcript_70154.nic	chr5	+	1159	5	NIC	ENSMUSG00000029149.15	novel	902	7	NA	NA	-30	0	intron_retention	FALSE	canonical	1	1	junction_4	38.6417843790889	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGATTACAGTTACTTG	NA	False	NA	9	True	AATAAA	-21	NA	31409004	31410546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_31409159_31409262_31409448_31409535_31410134_31410238_31410352_31410437
transcript_70156.nic	chr5	+	1270	4	NIC	ENSMUSG00000029149.15	novel	902	7	NA	NA	-37	0	intron_retention	FALSE	canonical	1	1	junction_3	44.5944690142922	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGATTACAGTTACTTG	NA	False	NA	9	True	AATAAA	-21	NA	31408997	31410546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_31409448_31409535_31410134_31410238_31410352_31410437
transcript_70163.known	chr5	+	1088	2	FSM	ENSMUSG00000029149.15	ENSMUST00000201393.2	1088	2	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCTGCAGGAACTGACAGA	NA	False	NA	NA	False	NA	NA	NA	31409059	31410235	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31409448_31409535
transcript_70164.known	chr5	+	1027	6	FSM	ENSMUSG00000029149.15	ENSMUST00000201333.4	1027	6	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_3	7.52063827078527	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409034	31410541	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31409448_31409535_31409596_31409708_31409916_31409998_31410134_31410238_31410347_31410437
transcript_70165.known	chr5	-	5403	48	FSM	ENSMUSG00000038564.12	ENSMUST00000041565.11	5403	48	0	0	0	0	multi-exon	TRUE	canonical	3	41	junction_37	14.3941162971073	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGCATTCTTTGCTCAA	NA	False	NA	1	True	ATTAAA	-20	NA	31448451	31410620	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_31410769_31410896_31410989_31411158_31411313_31411562_31411662_31411745_31411806_31411996_31412093_31412594_31412715_31412908_31413020_31413898_31414016_31414232_31414320_31414674_31414739_31414860_31414971_31415157_31415257_31417737_31417868_31417966_31418077_31418270_31418452_31418782_31418848_31419174_31419269_31420263_31420407_31420709_31420827_31420914_31421051_31421121_31421220_31421750_31421841_31422661_31422807_31422986_31423108_31423258_31423338_31423518_31423768_31423978_31424057_31424577_31424671_31424938_31425024_31428983_31429092_31429330_31429468_31433195_31433364_31434212_31434326_31437762_31437849_31438009_31438114_31438305_31438360_31438687_31438850_31439899_31439996_31440376_31440501_31441347_31441563_31442595_31442684_31442802_31442883_31443106_31443173_31443421_31443462_31443920_31444034_31444237_31444382_31448317
transcript_70167.known	chr5	-	742	5	FSM	ENSMUSG00000038564.12	ENSMUST00000201426.4	742	5	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_4	11.2110436623893	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTGCTGCATTCTTTGCT	NA	False	NA	-2	True	ATTAAA	-17	NA	31411997	31410623	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_31410769_31410896_31410989_31411158_31411313_31411562_31411662_31411745
transcript_7017.known	chr10	+	563	1	FSM	ENSMUSG00000045886.8	ENSMUST00000057649.8	563	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5264	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCGGTGGTCATGGTGTC	NA	False	NA	NA	False	NA	NA	NA	43400079	43400642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_43400100_43400600
transcript_70170.known	chr5	+	3299	14	FSM	ENSMUSG00000062761.8	ENSMUST00000076264.8	3299	14	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_1	41.4283440690995	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTGGTCCTCCTTGCTG	7146	False	NA	16	True	AATAAA	-17	NA	31609778	31639098	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31609922_31610498_31610558_31622789_31622978_31623575_31623681_31623935_31624020_31624665_31624791_31625497_31625585_31627701_31627801_31628340_31628509_31630113_31630306_31630796_31630899_31633016_31633080_31634124_31634224_31637313
transcript_70172.nic	chr5	+	3240	13	NIC	ENSMUSG00000062761.8	novel	3299	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	73	junction_1	77.4128093764563	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTGGTCCTCCTTGCTG	7146	False	NA	16	True	AATAAA	-17	NA	31609778	31639098	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_31609922_31622789_31622978_31623575_31623681_31623935_31624020_31624665_31624791_31625497_31625585_31627701_31627801_31628340_31628509_31630113_31630306_31630796_31630899_31633016_31633080_31634124_31634224_31637313
transcript_70173.known	chr5	+	331	2	FSM	ENSMUSG00000062761.8	ENSMUST00000201599.2	331	2	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATTGGACAGTGCAGATAA	7229	False	NA	NA	False	NA	NA	NA	31609861	31610769	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31609922_31610498
transcript_7018.known	chr10	+	456	2	FSM	ENSMUSG00000045886.8	ENSMUST00000216543.2	456	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTCGGTGGTCATGGTGT	NA	False	NA	NA	False	AATAAA	-45	NA	43400101	43400641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_43400172_43400255
transcript_70182.known	chr5	+	3144	14	FSM	ENSMUSG00000064037.14	ENSMUST00000076949.13	3144	14	0	0	0	0	multi-exon	FALSE	canonical	3	859	junction_7	68.5179542833234	1731	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTGGCTAAGATTCATT	NA	False	NA	NA	False	NA	NA	NA	31652084	31670248	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31652228_31652861_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31660781_31661255_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
transcript_7019.known	chr10	-	860	4	FSM	ENSMUSG00000019797.12	ENSMUST00000147196.3	860	4	0	0	0	0	multi-exon	TRUE	canonical	3	617	junction_3	154.165135127528	4937	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGTCACCGGAGCACTCT	NA	False	NA	-12	True	AATAAA	-17	NA	43416964	43401128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_43401405_43406593_43406667_43408671_43409154_43416935
transcript_7020.known	chr10	+	1816	2	FSM	ENSMUSG00000047139.10	ENSMUST00000058714.10	1816	2	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	0	303	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCAGTCTGTTGAATTTAT	NA	False	NA	10	True	AATAAA	-19	NA	43455164	43460261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_43455319_43458599
transcript_70222.known	chr5	+	631	3	FSM	ENSMUSG00000064037.14	ENSMUST00000202394.4	631	3	0	0	0	0	multi-exon	FALSE	canonical	3	1028	junction_1	27.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAATGCCTCCTGTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	31652096	31655060	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31652228_31652861_31652956_31654654
transcript_70223.known	chr5	+	643	8	FSM	ENSMUSG00000064037.14	ENSMUST00000201942.4	643	8	0	0	0	0	multi-exon	FALSE	canonical	3	859	junction_7	68.3412804404841	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCGCTGTCAGCACATTG	NA	False	NA	NA	False	NA	NA	NA	31652137	31660874	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31652228_31652861_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734
transcript_70225.known	chr5	+	2499	14	FSM	ENSMUSG00000029141.17	ENSMUST00000202950.4	2499	14	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_11	21.8978262140197	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGTGATGATCATTCCC	NA	False	NA	11	True	AGTAAA	-21	NA	31684355	31711386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481_31693669_31697729_31697842_31701013_31701258_31703523_31703611_31705954_31706026_31708056_31708127_31711082
transcript_70226.nic	chr5	+	2509	14	NIC	ENSMUSG00000029141.17	novel	2499	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_11	26.2556840845094	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACTGAGGTGATGATCAT	NA	False	NA	7	True	AGTAAA	-17	NA	31684338	31711382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481_31693669_31697729_31697842_31701013_31701258_31703523_31703611_31705957_31706026_31708056_31708127_31711082
transcript_70230.known	chr5	+	2424	13	FSM	ENSMUSG00000029141.17	ENSMUST00000114533.9	2424	13	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_10	19.394300422776	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAACTGAGGTGATGATCA	NA	False	NA	6	True	AGTAAA	-16	NA	31684338	31711381	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481_31693669_31697729_31697842_31701013_31701258_31705954_31706026_31708056_31708127_31711082
transcript_70233.known	chr5	+	2109	8	FSM	ENSMUSG00000029141.17	ENSMUST00000201858.4	2109	8	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	11.004637241469	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTTGTTTTGTTTTGTT	NA	False	NA	NA	False	ATTAAA	-20	NA	31684355	31694166	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481
transcript_70234.nic	chr5	+	1508	7	ISM	ENSMUSG00000029141.17	ENSMUST00000201858.4	2109	8	-21	1832	-4	0	5prime_fragment	FALSE	canonical	3	90	junction_1	11.13552872566	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	31684334	31692334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201
transcript_70235.nic	chr5	+	1744	7	ISM	ENSMUSG00000029141.17	ENSMUST00000201858.4	2109	8	-19	1594	-2	238	5prime_fragment	FALSE	canonical	3	90	junction_1	11.13552872566	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCATACTTTAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	31684336	31692572	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201
transcript_70237.nic	chr5	+	2163	6	ISM	ENSMUSG00000029141.17	ENSMUST00000201858.4	2109	8	-17	1825	0	7	intron_retention	FALSE	canonical	3	90	junction_1	11.1713920350152	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAAGAAGAAG	NA	False	NA	NA	False	NA	NA	NA	31684338	31692341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388
transcript_70238.nic	chr5	+	1136	5	ISM	ENSMUSG00000029141.17	ENSMUST00000201858.4	2109	8	-17	4313	0	281	5prime_fragment	FALSE	canonical	3	90	junction_1	12.4774797134678	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGCAATGGTACAGTGCT	NA	False	NA	NA	False	AAGAAA	-3	NA	31684338	31689853	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787
transcript_70239.known	chr5	-	2693	5	FSM	ENSMUSG00000053134.14	ENSMUST00000065388.11	2693	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	3.34477204006491	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATTCCAATTCTTTTTTA	NA	False	NA	5	True	AATAAA	-25	NA	31684117	31671907	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_31673271_31675610_31675849_31677426_31677752_31679997_31680606_31683958
transcript_7024.known	chr10	-	1981	11	FSM	ENSMUSG00000019863.8	ENSMUST00000020012.7	1981	11	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	11.040380428228	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTGGATTTTACTATAAT	NA	False	NA	NA	False	TATAAA	-6	NA	43777741	43750183	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_43750703_43752467_43752674_43757468_43757587_43758061_43758255_43760744_43760858_43760938_43761115_43764964_43765133_43770510_43770608_43771429_43771529_43772004_43772165_43777609
transcript_70241.nnic	chr5	-	911	3	NNC	ENSMUSG00000053134.14	novel	2693	5	NA	NA	12	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	40.5	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGTTATTCCAATTCTT	NA	False	NA	0	True	AATAAA	-20	NA	31684105	31671912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_31672310_31680238_31680606_31683958
transcript_70243.known	chr5	-	1246	1	FSM	ENSMUSG00000053134.14	ENSMUST00000201692.2	1246	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	31684046	31682800	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_31682800_31684000
transcript_70244.known	chr5	+	660	5	FSM	ENSMUSG00000029141.17	ENSMUST00000202273.4	660	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	37.2852182506687	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGTGATGATCATTCCC	1937	False	NA	11	True	AGTAAA	-21	NA	31701126	31711386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31701258_31703523_31703611_31705957_31706026_31708056_31708127_31711082
transcript_70247.nnic	chr5	+	526	3	NIC	ENSMUSG00000105617.5	novel	338	3	NA	NA	-67	-79308	combination_of_known_splicesites	FALSE	canonical	1	7	junction_1	1163	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGTCTCTTAGAGGTAT	7608	False	NA	19	True	AATAAA	-22	NA	31754214	31779988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_31754366_31773724_31773832_31779720
transcript_70251.known	chr5	-	1042	8	FSM	ENSMUSG00000029136.10	ENSMUST00000031018.10	1042	8	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	7.57816411992848	239	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGGTGTGGCTACTCATC	NA	False	NA	-31	True	AATAAA	-23	NA	31854971	31781782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_31782001_31805064_31805254_31809152_31809245_31817250_31817416_31823062_31823126_31824204_31824269_31830656_31830790_31854853
transcript_70260.known	chr5	+	839	5	FSM	ENSMUSG00000106918.4	ENSMUST00000202243.4	839	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	45.0832563153994	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATATCTCTATTCTTTA	NA	False	NA	NA	False	AATAAA	-24	NA	31771315	31812205	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31771367_31773724_31773832_31786959_31787065_31807646_31807829_31811811
transcript_70267.known	chr5	+	638	4	FSM	ENSMUSG00000106918.4	ENSMUST00000201483.4	638	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	972.261624598372	861	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTATACTCTTGTCTCTTA	NA	False	NA	12	True	AATAAA	-15	NA	31771360	31779981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31771612_31771946_31771966_31773724_31773832_31779720
transcript_70272.known	chr5	+	367	2	FSM	ENSMUSG00000106918.4	ENSMUST00000202953.2	367	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	602	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGTCTCTTAGAGGTAT	9470	False	NA	19	True	AATAAA	-22	NA	31756076	31779988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31756176_31779720
transcript_70273.known	chr5	+	478	4	FSM	ENSMUSG00000106918.4	ENSMUST00000031024.14	478	4	0	0	0	0	multi-exon	FALSE	canonical	3	1273	junction_1	440.713814926043	10328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGTCTCTTAGAGGTAT	NA	False	NA	19	True	AATAAA	-22	NA	31771282	31779988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31771367_31771946_31771966_31773724_31773832_31779720
transcript_70277.known	chr5	+	1888	12	FSM	ENSMUSG00000052139.19	ENSMUST00000201352.4	1888	12	0	0	0	0	multi-exon	FALSE	canonical	3	639	junction_9	56.490326824983	1613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTCCTGAAGGCTTC	5552	False	NA	35	True	AATAAA	-31	NA	31855027	32242306	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31855422_31859169_31859322_31888310_31888388_31942921_31943017_31977821_31978017_31988428_31988504_32058398_32058509_32158704_32158805_32162053_32162125_32164578_32164662_32214854_32215009_32241924
transcript_70314.known	chr5	+	715	6	FSM	ENSMUSG00000052139.19	ENSMUST00000201202.4	715	6	0	0	0	0	multi-exon	FALSE	canonical	3	657	junction_3	63.9606128801155	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTGTGATCGTTTAGCT	5882	False	NA	NA	False	AATAAA	-14	NA	31855357	31988560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31855422_31859169_31859322_31888310_31888388_31942921_31943017_31977821_31978017_31988428
transcript_70319.known	chr5	+	742	3	FSM	ENSMUSG00000052139.19	ENSMUST00000201487.4	742	3	0	0	0	0	multi-exon	FALSE	canonical	3	727	junction_2	56.5	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	5838	False	NA	NA	False	NA	NA	NA	31855313	31888792	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31855422_31859169_31859322_31888310
transcript_70321.known	chr5	+	2034	8	FSM	ENSMUSG00000052139.19	ENSMUST00000201107.4	2034	8	0	0	0	0	multi-exon	FALSE	canonical	3	656	junction_6	59.6452095344476	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	5874	False	NA	NA	False	TTTAAA	-42	NA	31855349	32159962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_31855422_31859169_31859322_31888310_31888388_31942921_31943017_31977821_31978017_31988428_31988504_32058398_32058509_32158704
transcript_70322.nic	chr5	+	1417	13	ISM	ENSMUSG00000029134.15	ENSMUST00000101376.3	4699	58	94986	7	-11232	0	3prime_fragment	FALSE	canonical	1	3	junction_4	1.6393596310755	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTGTCCATGTTCTTCT	7354	False	NA	NA	False	GATAAA	-19	NA	32499680	32521693	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_32499882_32502187_32502256_32502719_32502764_32502980_32503081_32506965_32507018_32507881_32507963_32509036_32509103_32509511_32509607_32510969_32511049_32512129_32512235_32512660_32512757_32519870_32519946_32521338
transcript_70324.known	chr5	+	2938	5	FSM	ENSMUSG00000029134.15	ENSMUST00000202453.4	2938	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	0.707106781186548	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAAGCGGTCCCAGTGTG	NA	False	NA	NA	False	NA	NA	NA	32510912	32523864	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_32511049_32512129_32512235_32512660_32512757_32519870_32519946_32521338
transcript_70325.nic	chr5	+	2425	6	NIC	ENSMUSG00000014956.16	novel	5962	8	NA	NA	-7	-5	intron_retention	FALSE	canonical	0	0	junction_1	552.155050687757	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAACGTCTGAGTGATTAT	3031	False	NA	18	True	AGTAAA	-15	NA	32616522	32650095	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_32616752_32640769_32640809_32642602_32642675_32643224_32643377_32644914_32645050_32648297
transcript_70326.known	chr5	+	383	4	FSM	ENSMUSG00000014956.16	ENSMUST00000202078.2	383	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	632.928291532479	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCACCGAAGAAAAGGTGAA	3074	False	NA	NA	False	NA	NA	NA	32616565	32648383	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_32616752_32640769_32640809_32642602_32642675_32648297
transcript_70328.known	chr5	+	2657	12	FSM	ENSMUSG00000014932.16	ENSMUST00000202543.4	2657	12	0	0	0	0	multi-exon	FALSE	canonical	3	599	junction_1	80.0238600782178	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAAATAAAAAACAAACC	NA	False	NA	NA	False	NA	NA	NA	32768514	32842921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_32768720_32797674_32797948_32802351_32802452_32809000_32809100_32810306_32810411_32810500_32810651_32812449_32812606_32812771_32812952_32816378_32816456_32818095_32818250_32821612_32821745_32841894
transcript_70336.known	chr5	-	917	1	FSM	ENSMUSG00000106680.2	ENSMUST00000202098.2	917	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGCAGCAGCTTTATTAC	NA	False	NA	NA	False	AATAAA	-21	NA	32871332	32870415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_32870400_32871300
transcript_70339.known	chr5	-	2084	7	FSM	ENSMUSG00000023452.20	ENSMUST00000142957.6	2084	7	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	252.221904062452	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAACAAAACAAAAACT	NA	False	NA	NA	False	NA	NA	NA	32942983	32893665	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480_32896718_32922116_32922293_32942892
transcript_70349.known	chr5	+	286	1	FSM	ENSMUSG00000106654.2	ENSMUST00000199229.2	286	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGGATTTCAATCAGTCA	NA	False	NA	NA	False	GGGGCT	-21	NA	32995472	32995758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_32995500_32995800
transcript_7035.nic	chr10	-	1280	9	ISM	ENSMUSG00000019863.8	ENSMUST00000020012.7	1981	11	-15	7276	-15	-550	5prime_fragment	FALSE	canonical	3	75	junction_6	9.72111104761179	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTTAGAATCTTTGCT	NA	False	NA	-10	True	ATTAAA	-13	NA	43777756	43757459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_43757587_43758061_43758255_43760744_43760858_43760938_43761115_43764964_43765133_43770510_43770608_43771429_43771529_43772004_43772165_43777609
transcript_70350.known	chr5	-	2183	8	FSM	ENSMUSG00000023452.20	ENSMUST00000061895.16	2183	8	0	0	0	0	multi-exon	FALSE	canonical	3	685	junction_2	53.5235976948867	964	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTAGCTTTGTATTTTGTT	NA	False	NA	NA	False	ATTAAA	-19	NA	32942990	32893644	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480_32896718_32922116_32922293_32931739_32931811_32942892
transcript_70351.known	chr5	-	9959	11	FSM	ENSMUSG00000054280.15	ENSMUST00000120129.9	9959	11	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_10	39.1414102965133	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCAAGGCTATTTTGTTC	7053	False	NA	5	True	AATAAA	-26	NA	33011600	32947163	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_32951177_32952933_32953006_32977209_32977317_32977936_32978109_32979410_32979483_32984301_32988896_32989148_32989203_32992959_32993033_33001387_33001909_33009225_33009343_33011436
transcript_70352.known	chr5	+	720	10	FSM	ENSMUSG00000037426.19	ENSMUST00000118698.8	720	10	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	39.9910483810725	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGAAGGTATGGTTCTTTC	1998	False	NA	NA	False	NA	NA	NA	33021049	33053278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_33021088_33021920_33022044_33025317_33025406_33026164_33026212_33032625_33032712_33034413_33034498_33035971_33036022_33044322_33044393_33050718_33050798_33053223
transcript_70354.known	chr5	+	1764	2	FSM	ENSMUSG00000018965.12	ENSMUST00000019109.8	1764	2	0	0	0	0	multi-exon	FALSE	canonical	3	1727	junction_1	0	2085	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGCCTGGCCTTGATTT	NA	False	NA	9	True	AATAAA	-20	NA	33176159	33185310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_33176499_33183885
transcript_70355.known	chr5	+	333	1	FSM	ENSMUSG00000093885.3	ENSMUST00000137013.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1336	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	NA	False	NA	NA	False	NA	NA	NA	33233381	33233714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_33233400_33233700
transcript_70356.known	chr5	+	4104	15	FSM	ENSMUSG00000011034.7	ENSMUST00000011178.5	4104	15	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	3.0572763655761	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGCTTTGAAATTGCAGG	NA	False	NA	NA	False	AATAAA	-15	NA	33261562	33320214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_33261936_33274126_33274199_33289293_33289399_33290729_33290790_33291946_33292052_33301306_33301413_33302593_33302675_33303850_33304072_33304286_33304423_33306240_33306349_33309902_33310054_33311889_33312059_33315431_33315648_33316420_33316530_33318122
transcript_70357.known	chr5	-	2045	6	FSM	ENSMUSG00000037379.8	ENSMUST00000046186.8	2045	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1.4142135623731	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAGGGTGACCTCCCACC	NA	False	NA	NA	False	AATAAA	-21	NA	33375799	33371270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_33371997_33372892_33373068_33373676_33373869_33373940_33374165_33374587_33374808_33375291
transcript_7036.nic	chr10	-	962	5	ISM	ENSMUSG00000019863.8	ENSMUST00000154405.2	2290	8	-15	7764	-15	0	5prime_fragment	FALSE	canonical	3	75	junction_2	10.2316909648406	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGGCTTCATGAATCTTA	NA	False	NA	NA	False	AATAAA	-13	NA	43777756	43764673	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_43765133_43770510_43770608_43771429_43771529_43772004_43772165_43777609
transcript_70363.known	chr5	+	2193	9	FSM	ENSMUSG00000079562.8	ENSMUST00000114449.7	2193	9	0	0	0	0	multi-exon	FALSE	canonical	3	507	junction_4	39.7106723690244	905	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTGAGGTGTTTGTAA	NA	False	NA	20	True	AATAAA	-21	NA	33492852	33530640	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_33492990_33515783_33515967_33517695_33517900_33520038_33520162_33523065_33523143_33525981_33526091_33527774_33527909_33528957_33529154_33529610
transcript_70364.known	chr5	+	7326	14	FSM	ENSMUSG00000037355.15	ENSMUST00000087864.12	7326	14	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_13	2.37342286469869	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTGCTGTTGTTATTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	33536039	33577098	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_33536347_33536569_33536670_33544999_33545331_33546059_33546181_33546985_33547382_33549087_33549201_33549399_33549529_33559837_33559944_33566152_33566325_33566770_33566894_33568202_33568387_33568904_33569017_33571242_33571418_33572141
transcript_70366.known	chr5	-	2112	7	FSM	ENSMUSG00000037339.18	ENSMUST00000150033.8	2112	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	74.8793473974411	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGATTCTGCCTAGATTCT	NA	False	NA	-12	True	ATTAAA	-14	NA	33786932	33757699	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_33758225_33764807_33765572_33765674_33765834_33767775_33767831_33771946_33772179_33786196_33786322_33786680
transcript_70368.known	chr5	-	2009	6	FSM	ENSMUSG00000037339.18	ENSMUST00000065119.15	2009	6	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_2	26.6187903556867	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTAGATTCTTTTTGTCAG	NA	False	NA	-3	True	ATTAAA	-23	NA	33786979	33757690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_33758225_33764807_33765572_33767775_33767831_33771946_33772179_33786196_33786322_33786680
transcript_7037.nic	chr10	-	891	5	ISM	ENSMUSG00000019863.8	ENSMUST00000154405.2	2290	8	-15	7835	-15	-71	5prime_fragment	FALSE	canonical	3	75	junction_2	10.2316909648406	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCCTGTAATCTCTGG	NA	False	NA	NA	False	ATTAAA	-27	NA	43777756	43764744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_43765133_43770510_43770608_43771429_43771529_43772004_43772165_43777609
transcript_70373.known	chr5	-	2346	5	FSM	ENSMUSG00000037339.18	ENSMUST00000045329.10	2346	5	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_2	24.5089269450949	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGATTCTGCCTAGATTCT	NA	False	NA	-12	True	ATTAAA	-14	NA	33786966	33757699	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_33758225_33764807_33765572_33767775_33767831_33771946_33772179_33786196
transcript_70379.known	chr5	+	2669	15	FSM	ENSMUSG00000037313.17	ENSMUST00000074849.13	2669	15	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_6	250.331341649912	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCAGGTCCTGTTGTTTA	NA	False	NA	35	True	ACTAAA	-23	NA	33815471	33829545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824386_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
transcript_70382.known	chr5	+	2187	15	FSM	ENSMUSG00000037313.17	ENSMUST00000114426.10	2187	15	0	0	0	0	multi-exon	FALSE	canonical	3	792	junction_7	83.9525193797308	500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	32	True	ACTAAA	-20	NA	33815929	33829542	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
transcript_7039.known	chr10	+	2981	9	FSM	ENSMUSG00000019864.15	ENSMUST00000054418.12	2981	9	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_8	16.985287751463	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGGTTTTTGGTCACTG	NA	False	NA	8	True	NA	NA	NA	43777802	43823858	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_43778533_43783754_43783907_43785902_43785972_43786788_43786914_43797382_43797432_43804318_43804456_43808358_43808543_43811994_43812088_43822416
transcript_70401.known	chr5	-	2369	4	FSM	ENSMUSG00000019295.9	ENSMUST00000140931.2	2369	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	31.3793987620328	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTACTTCATTTTGTTT	NA	False	NA	-2	True	AATAAA	-16	NA	33815243	33810562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_33811959_33812056_33812217_33812666_33813142_33814905
transcript_70402.known	chr5	-	2828	4	FSM	ENSMUSG00000019295.9	ENSMUST00000019439.9	2828	4	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_3	8.99382504215469	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACTTCATTTTGTTTAAC	NA	False	NA	1	True	AATAAA	-19	NA	33815760	33810559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_33811959_33812056_33812217_33812666_33813142_33814966
transcript_70404.known	chr5	-	1906	8	FSM	ENSMUSG00000004642.14	ENSMUST00000057551.14	1906	8	0	0	0	0	multi-exon	FALSE	canonical	3	1110	junction_4	44.1837535937436	3134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCCCTATACTGTTTGG	NA	False	NA	-4	True	AATAAA	-22	NA	33809918	33797398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_33798273_33799244_33799327_33801080_33801231_33802843_33802982_33803353_33803414_33807086_33807192_33809306_33809424_33809538
transcript_70405.known	chr5	-	1027	8	FSM	ENSMUSG00000004642.14	ENSMUST00000075670.13	1027	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	406.856741572836	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTCCTATACTACTGT	NA	False	NA	NA	False	NA	NA	NA	33809689	33792295	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_33792520_33799244_33799327_33801080_33801231_33802843_33802982_33803353_33803414_33807086_33807192_33809306_33809424_33809538
transcript_70406.known	chr5	-	1578	7	FSM	ENSMUSG00000004642.14	ENSMUST00000101354.10	1578	7	0	0	0	0	multi-exon	FALSE	canonical	2	22	junction_4	432.7992863005	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCCCTATACTGTTTGG	NA	False	NA	-4	True	AATAAA	-22	NA	33809650	33797398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_33798273_33799244_33799327_33801080_33801231_33802843_33802982_33807086_33807192_33809306_33809424_33809538
transcript_70407.known	chr5	-	1191	6	FSM	ENSMUSG00000004642.14	ENSMUST00000139518.8	1191	6	0	0	0	0	multi-exon	FALSE	canonical	3	1110	junction_2	48.586417855199	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCCTGTCCTCTGTTTTA	NA	False	NA	NA	False	NA	NA	NA	33809644	33800565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_33801231_33802843_33802982_33803353_33803414_33807086_33807192_33809306_33809424_33809538
transcript_70408.known	chr5	+	679	6	FSM	ENSMUSG00000037313.17	ENSMUST00000138240.5	679	6	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_4	391.11001009946	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCAGGTCCTGTTGTTTA	4576	False	NA	35	True	ACTAAA	-23	NA	33826004	33829545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829069_33829130_33829325
transcript_70409.known	chr5	-	5272	14	FSM	ENSMUSG00000005299.7	ENSMUST00000005431.6	5272	14	0	0	0	0	multi-exon	FALSE	canonical	3	324	junction_8	46.4800014258216	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTACAGTGGTGTGTCC	NA	False	NA	NA	False	AATAAA	-20	NA	33940161	33897016	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_33899957_33900985_33901125_33902359_33902548_33903583_33903719_33904719_33904855_33905504_33905646_33906085_33906218_33909835_33909956_33918066_33918271_33918923_33919062_33919802_33919947_33926704_33927156_33935951_33936013_33939817
transcript_70415.known	chr5	-	2580	11	FSM	ENSMUSG00000029111.8	ENSMUST00000030993.8	2580	11	0	0	0	0	multi-exon	FALSE	canonical	3	561	junction_5	32.3241395863834	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTTCCACTTTAAATGCT	NA	False	NA	0	True	AATAAA	-29	NA	34093757	34055259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_34056254_34056355_34056456_34056625_34056898_34057756_34057869_34058534_34058624_34058931_34059002_34059088_34059220_34060714_34060805_34077835_34077998_34079189_34079362_34093369
transcript_70427.known	chr5	-	1926	3	FSM	ENSMUSG00000029111.8	ENSMUST00000132942.2	1926	3	0	0	0	0	multi-exon	FALSE	canonical	3	633	junction_1	7	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATGTAAACAAATATAACCT	NA	False	NA	NA	False	NA	NA	NA	34093594	34076468	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_34077998_34079189_34079362_34093369
transcript_70429.known	chr5	+	451	4	FSM	ENSMUSG00000070858.13	ENSMUST00000114382.2	451	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	16.5797734872612	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTGTCCTGTATTTTG	NA	False	NA	5	True	AATAAA	-13	NA	34140877	34142353	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_34140988_34141100_34141241_34141395_34141485_34142241
transcript_70430.known	chr5	+	477	4	FSM	ENSMUSG00000070858.13	ENSMUST00000094869.12	477	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	12.3648246606609	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCCTGTATTTTGCTCT	NA	False	NA	9	True	AATAAA	-17	NA	34140776	34142357	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_34140909_34141100_34141241_34141395_34141485_34142241
transcript_70431.nnic	chr5	+	356	3	NIC	ENSMUSG00000070858.13	novel	511	4	NA	NA	15	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	15.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTGTCCTGTATTTTG	NA	False	NA	5	True	AATAAA	-13	NA	34140828	34142353	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_34140984_34141395_34141485_34142241
transcript_70433.known	chr5	+	434	4	FSM	ENSMUSG00000070858.13	ENSMUST00000142510.2	434	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	16.5797734872612	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTCCTGTATTTTGC	NA	False	NA	6	True	AATAAA	-14	NA	34140853	34142354	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_34140909_34141063_34141241_34141395_34141485_34142241
transcript_70434.nnic	chr5	-	414	3	NNC	ENSMUSG00000079555.3	novel	2073	5	NA	NA	8	4575	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	0.5	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGGCTTTGTCTGTATGG	9986	False	NA	NA	False	TATAAA	-18	NA	34326839	34306648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_34306812_34307060_34307206_34326733
transcript_70446.known	chr5	-	2073	5	FSM	ENSMUSG00000079555.3	ENSMUST00000060049.8	2073	5	0	0	0	0	multi-exon	FALSE	canonical	3	397	junction_4	45.778679535347	738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCTGTGTTTTTGTTTTT	9954	False	NA	0	True	NA	NA	NA	34326871	34311223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_34311451_34320866_34321096_34323259_34323700_34324748_34325788_34326733
transcript_70450.known	chr5	+	2895	8	FSM	ENSMUSG00000029110.14	ENSMUST00000030992.13	2895	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1003.41470052242	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCTTTCATTTATTCAGT	NA	False	NA	25	True	AATAAA	-15	NA	34493723	34510780	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_34493829_34499865_34500024_34504118_34504246_34506007_34506088_34506893_34506904_34507255_34507416_34508133_34508183_34508574
transcript_70453.known	chr5	+	3046	8	FSM	ENSMUSG00000029110.14	ENSMUST00000182709.8	3046	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	927.964241042219	1016	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTCATTTATTCAGTTAT	NA	False	NA	28	True	AATAAA	-18	NA	34493632	34510783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506088_34506893_34506904_34507255_34507416_34508133_34508183_34508574
transcript_70456.known	chr5	+	2944	8	FSM	ENSMUSG00000029110.14	ENSMUST00000182047.2	2944	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1054.04635300622	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTGAACTAAGTATCTTT	NA	False	NA	13	True	AATAAA	-3	NA	34494275	34510768	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_34494442_34499865_34500024_34504118_34504246_34506007_34506088_34506893_34506904_34507255_34507416_34508133_34508183_34508574
transcript_70463.known	chr5	+	1205	6	FSM	ENSMUSG00000029110.14	ENSMUST00000182970.8	1205	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	963.179028010889	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	34493671	34507871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506088_34506893_34506904_34507255
transcript_70468.known	chr5	+	928	3	FSM	ENSMUSG00000029110.14	ENSMUST00000182772.8	928	3	0	0	0	0	multi-exon	FALSE	canonical	3	2071	junction_1	95	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTACTATTCACAGCTTACA	NA	False	NA	NA	False	NA	NA	NA	34493767	34504770	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_34493886_34499865_34500024_34504118
transcript_70469.known	chr5	+	5536	21	FSM	ENSMUSG00000037210.17	ENSMUST00000180376.8	5536	21	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	17.141980632354	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCAGTCTGGTTGCTTTC	1443	False	NA	16	True	AATACA	-15	NA	34527276	34643800	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_34527772_34567924_34568168_34577344_34577500_34578127_34578296_34583610_34583846_34588475_34588601_34593794_34593943_34596654_34596733_34597464_34597578_34597691_34597935_34600644_34600799_34600922_34601103_34602005_34602258_34615248_34615448_34616341_34616633_34618438_34618722_34619427_34619612_34621317_34621549_34622917_34623792_34633069_34633152_34642997
transcript_70471.known	chr5	-	1987	6	FSM	ENSMUSG00000059866.14	ENSMUST00000087737.10	1987	6	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_2	11.160645142643	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAGAGCTGGGCTGGA	NA	False	NA	-10	True	AATAAA	-19	NA	34671335	34653430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_34654295_34656523_34656644_34656831_34657081_34658251_34658342_34660880_34661172_34670962
transcript_70474.nic	chr5	-	2238	5	NIC	ENSMUSG00000059866.14	novel	1987	6	NA	NA	-63	0	intron_retention	FALSE	canonical	3	117	junction_4	10.0623058987491	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAGAGCTGGGCTGGA	NA	False	NA	-10	True	AATAAA	-19	NA	34671398	34653430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_34654295_34656523_34657081_34658251_34658342_34660880_34661172_34670962
transcript_70476.known	chr5	+	3761	15	FSM	ENSMUSG00000029106.15	ENSMUST00000114340.9	3761	15	0	0	0	0	multi-exon	FALSE	canonical	3	389	junction_14	43.2925501438664	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGGGGGCAACTTTGCAT	NA	False	NA	26	True	AATAAA	-27	NA	34731216	34789652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_34731258_34758667_34758883_34762033_34762197_34763171_34763324_34767535_34767617_34767833_34767984_34770631_34770776_34770862_34770962_34771527_34771705_34773906_34774159_34776693_34776796_34777388_34777479_34782622_34782780_34785758_34785858_34787813
transcript_70482.known	chr5	-	1754	13	FSM	ENSMUSG00000001082.13	ENSMUST00000114331.10	1754	13	0	0	0	0	multi-exon	TRUE	canonical	3	36	junction_12	99.4937183946806	605	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTCCGTCTTACTATT	NA	False	NA	-4	True	AATAAA	-20	NA	34794556	34790989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794128_34794442
transcript_70497.known	chr5	-	1906	13	FSM	ENSMUSG00000001082.13	ENSMUST00000114329.8	1906	13	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_12	91.0092715057098	824	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCCTTTCCGTCTTACT	NA	False	NA	-7	True	AATAAA	-17	NA	34794536	34790992	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794131_34794270
transcript_70498.known	chr5	-	2702	18	FSM	ENSMUSG00000036693.13	ENSMUST00000041364.13	2702	18	0	0	0	0	multi-exon	FALSE	canonical	3	557	junction_10	61.2066102226557	1213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGGCTGTGTGGTGTGTT	NA	False	NA	-5	True	AATAAA	-16	NA	34817492	34795879	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_34795996_34796234_34796391_34796528_34796648_34798213_34798362_34798666_34798827_34801269_34801424_34802056_34802159_34804505_34804642_34805735_34805822_34806680_34806812_34807669_34807965_34809093_34809226_34809639_34809763_34811226_34811362_34811779_34811914_34814084_34814227_34815218_34815354_34817194
transcript_70499.known	chr5	+	305	3	FSM	ENSMUSG00000052783.17	ENSMUST00000148588.2	305	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGGTAGTTGTCTTGAT	NA	False	NA	NA	False	ATTAAA	-15	NA	34818318	34832059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_34818349_34826453_34826547_34831877
transcript_705.known	SIRV7	-	2498	5	FSM	SIRV7A	SIRV703	2498	5	0	0	0	0	multi-exon	FALSE	canonical	3	1087	junction_2	1651.92015167199	9493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTTAATATGAATCAAC	NA	False	NA	NA	False	TATAAA	-22	NA	147918	1000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV7_-_2676_2993_3112_3809_3897_114680_114989_147608
transcript_70503.known	chr5	-	2981	8	FSM	ENSMUSG00000029103.17	ENSMUST00000030986.15	2981	8	0	0	0	0	multi-exon	FALSE	canonical	3	809	junction_2	73.9092107153867	1986	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGGGAAAATGACCTGTG	NA	False	NA	-7	True	AATAAA	-21	NA	35263110	35248844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_35250731_35252193_35252371_35253319_35253403_35254874_35255034_35255496_35255618_35256500_35256623_35259738_35259884_35262822
transcript_70506.known	chr5	-	1573	7	FSM	ENSMUSG00000029103.17	ENSMUST00000147028.3	1573	7	0	0	0	0	multi-exon	FALSE	canonical	3	809	junction_2	75.6233356107021	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAACACTTGAAGACACCG	NA	False	NA	NA	False	NA	NA	NA	35263033	35250638	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_35250731_35252193_35252371_35253319_35253403_35254874_35255618_35256500_35256623_35259738_35259884_35262822
transcript_70517.known	chr5	-	3790	11	FSM	ENSMUSG00000029097.12	ENSMUST00000030980.12	3790	11	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	7.3	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTAATAGAAATATTTAT	7626	False	NA	NA	False	TATAAA	-21	NA	35732414	35713546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_35715400_35719835_35719953_35721366_35721800_35722704_35722889_35723765_35723873_35726104_35726177_35727214_35727323_35728387_35728457_35730046_35730267_35731423_35731539_35731902
transcript_7052.known	chr10	+	2352	8	FSM	ENSMUSG00000038160.8	ENSMUST00000039286.5	2352	8	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_3	36.7828709025918	792	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTATGTGGTGGCTCA	NA	False	NA	NA	False	AATAAA	-18	NA	44144353	44240287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_44144581_44162027_44162194_44165858_44165987_44170591_44170671_44179562_44179726_44195455_44195551_44222952_44223071_44238911
transcript_70522.nic	chr5	-	2084	9	ISM	ENSMUSG00000029097.12	ENSMUST00000030980.12	3790	11	-9	7565	-9	-7565	5prime_fragment	FALSE	canonical	3	72	junction_1	7.27044530960793	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGACAGAAGCATCTGATTG	7617	False	NA	NA	False	AATACA	-18	NA	35732423	35721111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_35721800_35722704_35722889_35723765_35723873_35726104_35726177_35727214_35727323_35728387_35728457_35730046_35730267_35731423_35731539_35731902
transcript_70524.known	chr5	+	3976	19	FSM	ENSMUSG00000029098.18	ENSMUST00000068947.14	3976	19	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_8	8.72982683351794	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGCTTTCTCCCCTGTG	NA	False	NA	24	True	AATAAA	-15	NA	35740383	35771145	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_35740479_35741219_35741320_35745502_35745658_35745962_35746197_35746519_35746595_35747037_35747128_35749419_35749564_35751653_35751743_35755658_35755756_35757035_35757219_35758846_35758970_35760264_35760386_35761957_35762081_35762550_35762665_35764425_35764542_35765601_35765777_35766363_35766432_35767079_35767167_35769358
transcript_70528.known	chr5	+	3587	2	FSM	ENSMUSG00000029098.18	ENSMUST00000127641.2	3587	2	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAGAAAAAAACAAAC	NA	False	NA	NA	False	AATACA	-25	NA	35740435	35744763	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_35740479_35741219
transcript_70530.known	chr5	-	4246	18	FSM	ENSMUSG00000036553.17	ENSMUST00000201511.2	4246	18	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_17	16.3400287573917	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTGGTATCTTCTAGGT	NA	False	NA	-8	True	AGTAAA	-12	NA	35897331	35854526	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_35854913_35857054_35857252_35857600_35857752_35857928_35858052_35859194_35859346_35860694_35860876_35863205_35864886_35866988_35867031_35868204_35868339_35871406_35871603_35872369_35872447_35873452_35873664_35874273_35874421_35875614_35875721_35876316_35876445_35878873_35878949_35881257_35881489_35897301
transcript_70534.nnic	chr5	+	952	3	Antisense	novelGene_ENSMUSG00000036553.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	13	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATTTGTGGTCATGGTAT	NA	False	NA	NA	False	NA	NA	NA	35856147	35859909	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr5_+_35856270_35858548_35858760_35859290
transcript_70537.known	chr5	+	2579	18	FSM	ENSMUSG00000029095.18	ENSMUST00000114205.8	2579	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	34.0068179608159	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTAGTTTTACGGTCCCTG	1557	False	NA	39	True	ATTAAA	-41	NA	35915267	36041493	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36006147_36006250_36006859_36006914_36014471_36014525_36015169_36015309_36031976_36031985_36032176_36032258_36040649
transcript_70543.nic	chr5	+	1960	15	NIC	ENSMUSG00000029095.18	novel	3042	19	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_12	19.8329760443437	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTCCCAAACAGCCTAAG	1510	False	NA	5	True	AAAACA	-8	NA	35915220	36015530	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36000511_36000611_36006147_36006250_36014471_36014525_36015169
transcript_70546.nic	chr5	+	1861	14	NIC	ENSMUSG00000029095.18	novel	2579	18	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_11	15.4395174220198	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTCCCAAACAGCCTAAG	1510	False	NA	5	True	AAAACA	-8	NA	35915220	36015530	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36006147_36006250_36014471_36014525_36015169
transcript_70553.known	chr5	+	6618	17	FSM	ENSMUSG00000029094.13	ENSMUST00000064571.11	6618	17	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	3.8155725323993	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTGAGTCGTCACTTC	2005	False	NA	15	True	NA	NA	NA	36050662	36161267	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_36050885_36092895_36093025_36093381_36093477_36102531_36102641_36105378_36105591_36108198_36108379_36119089_36119192_36119548_36119631_36125913_36126064_36131731_36131944_36133835_36133982_36141532_36141651_36146897_36147013_36150884_36151050_36153300_36153492_36154861_36155027_36157042
transcript_70554.known	chr5	-	714	2	FSM	ENSMUSG00000039563.7	ENSMUST00000151434.2	714	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCTCCTTTAAGATTTTT	NA	False	NA	NA	False	TATAAA	-22	NA	36622197	36615728	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_36616104_36621858
transcript_70556.known	chr5	+	3528	4	FSM	ENSMUSG00000029198.4	ENSMUST00000031099.4	3528	4	0	0	0	0	multi-exon	FALSE	canonical	3	2567	junction_1	75.3126815350509	10737	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGCTTAAGCACAGCTT	NA	False	NA	NA	False	AATAAA	-33	NA	36622341	36631424	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_36622600_36626781_36626945_36627945_36628028_36628399
transcript_70557.known	chr5	-	3884	12	FSM	ENSMUSG00000029192.18	ENSMUST00000171385.8	3884	12	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_11	14.7609043598508	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTCACTGTGTACTTTGG	8784	False	NA	-1	True	AATAAA	-21	NA	36687967	36647948	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_36650459_36652361_36652621_36662368_36662479_36664921_36665051_36665703_36665776_36669797_36669893_36671382_36671464_36676616_36676724_36677787_36677906_36680270_36680354_36682273_36682393_36687766
transcript_70562.nnic	chr5	-	1306	3	NNC	ENSMUSG00000029190.20	novel	2014	2	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	2	47	junction_1	14.5	52	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTGTATTATGTTTTA	NA	False	NA	NA	False	AATAAA	-21	NA	36853324	36828742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_36829428_36830091_36830587_36853198
transcript_70563.known	chr5	-	1273	1	FSM	ENSMUSG00000060708.5	ENSMUST00000071949.5	1273	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGATTTCCTTCTGGAGAT	NA	False	NA	-4	True	ATTAAA	-19	NA	36905994	36904721	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_36904700_36906000
transcript_70571.known	chr5	-	1648	2	FSM	ENSMUSG00000055302.6	ENSMUST00000068795.4	1648	2	0	0	0	0	multi-exon	FALSE	canonical	3	1678	junction_1	0	4793	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGCCTGTGTTTAGTTTA	NA	False	NA	41	True	AAGAAA	-22	NA	36954116	36952210	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_36953289_36953546
transcript_70573.known	chr5	-	3330	19	FSM	ENSMUSG00000029119.10	ENSMUST00000031002.10	3330	19	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_7	26.3739138796905	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCATGTTCAAGCCAGA	949	False	NA	-13	True	AATAAA	-21	NA	36987997	36964264	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_36964555_36965129_36965248_36966347_36966461_36967635_36967753_36970290_36970505_36970612_36970724_36971075_36971323_36971672_36971865_36972662_36972938_36973402_36973588_36974899_36975042_36975805_36975997_36978225_36978425_36979180_36979359_36981435_36981552_36983383_36983557_36985207_36985314_36986971_36987119_36987781
transcript_70580.nnic	chr5	-	1148	5	NNC	ENSMUSG00000029119.10	novel	3330	19	NA	NA	2134	348	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_4	96.5012953280939	55	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAATCTGGCCTCCGATTTT	NA	False	NA	-2	True	AATACA	-34	NA	36968173	36963916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_36964555_36965129_36965248_36966347_36966461_36967635_36967753_36968011
transcript_70583.nnic	chr5	-	800	5	NNC	ENSMUSG00000029119.10	novel	3330	19	NA	NA	2134	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_4	96.5012953280939	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCATGTTCAAGCCAGA	NA	False	NA	-13	True	AATAAA	-21	NA	36968173	36964264	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_36964555_36965129_36965248_36966347_36966461_36967635_36967753_36968011
transcript_70584.nnic	chr5	-	796	5	NNC	ENSMUSG00000029119.10	novel	3330	19	NA	NA	2021	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	106.773123959169	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCATGTTCAAGCCAGA	NA	False	NA	-13	True	AATAAA	-21	NA	36968286	36964264	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_36964555_36965129_36965248_36966347_36966461_36967635_36967753_36968128
transcript_70586.known	chr5	-	3787	8	FSM	ENSMUSG00000039474.14	ENSMUST00000043964.13	3787	8	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_7	10.259888211986	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGCCTTCTGGTTTGAT	NA	False	NA	1	True	AATAAA	-18	NA	37146549	37123447	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_37126023_37128901_37129054_37130529_37130611_37131077_37131249_37132814_37132960_37134227_37134311_37139401_37139642_37146209
transcript_70587.nic	chr5	+	2560	13	NIC	ENSMUSG00000063646.19	novel	2496	20	NA	NA	-31	0	combination_of_known_junctions	FALSE	canonical	3	99	junction_1	26.6327909832138	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCCTTTTTTATTTGTG	NA	False	NA	17	True	AATAAA	-20	NA	37185647	37282643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_37185944_37242579_37242843_37248470_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
transcript_7059.nnic	chr10	+	2292	7	NIC	ENSMUSG00000038160.8	novel	2352	8	NA	NA	-35	0	combination_of_known_splicesites	FALSE	canonical	3	39	junction_5	103.891636921468	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTATGTGGTGGCTCA	NA	False	NA	NA	False	AATAAA	-18	NA	44144318	44240287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_+_44144581_44162027_44162194_44165858_44165987_44170591_44170671_44179562_44179726_44222952_44223071_44238911
transcript_70590.known	chr5	+	2383	13	FSM	ENSMUSG00000063646.19	ENSMUST00000043794.11	2383	13	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	48.883080463035	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCCTTTTTTATTTGTG	NA	False	NA	17	True	AATAAA	-20	NA	37208200	37282643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_37208320_37242579_37242843_37248470_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
transcript_70593.nnic	chr5	+	2098	12	Fusion	ENSMUSG00000063646.19_ENSMUSG00000113373.2	novel	516	2	NA	NA	2840	0	multi-exon	FALSE	canonical	3	13	junction_1	47.5912346954217	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCCTTTTTTATTTGTG	3221	False	NA	17	True	AATAAA	-20	NA	37245553	37282643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr5_+_37245651_37248470_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
transcript_70594.nic	chr5	+	2076	11	ISM	ENSMUSG00000063646.19	ENSMUST00000121010.9	2496	20	5682	22702	-28	0	internal_fragment	FALSE	canonical	3	147	junction_1	11.74265728019	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCCTTTTTTATTTGTG	2452	False	NA	17	True	AATAAA	-20	NA	37248395	37282643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
transcript_70599.known	chr5	+	849	3	FSM	ENSMUSG00000063646.19	ENSMUST00000173836.8	849	3	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	10.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCAGCAGGAGATCCTGGA	NA	False	NA	NA	False	NA	NA	NA	37185678	37248791	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_37185944_37242579_37242843_37248470
transcript_70604.nic	chr5	+	816	3	ISM	ENSMUSG00000063646.19	ENSMUST00000212047.2	1191	6	7168	0	-2280	0	3prime_fragment	FALSE	canonical	3	187	junction_1	1	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCCTTTTTTATTTGTG	1752	False	NA	17	True	AATAAA	-20	NA	37278038	37282643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_37278369_37280623_37280687_37282220
transcript_70607.known	chr5	+	950	1	FSM	ENSMUSG00000063646.19	ENSMUST00000201223.2	950	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAAAAAATAAATAAAA	2480	False	NA	NA	False	NA	NA	NA	37248423	37249373	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_37248400_37249400
transcript_70608.known	chr5	+	2906	14	FSM	ENSMUSG00000029121.17	ENSMUST00000031004.11	2906	14	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	2.40069023605034	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAATAAAGAAATTAA	NA	False	NA	NA	False	NA	NA	NA	37403107	37449445	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_37403441_37422575_37422665_37426026_37426212_37430690_37430856_37433620_37433683_37435428_37435510_37436206_37436276_37437002_37437124_37437810_37437968_37440195_37440338_37441371_37441543_37443711_37443892_37446148_37446315_37448460
transcript_70609.known	chr5	+	2796	12	FSM	ENSMUSG00000050248.12	ENSMUST00000101258.5	2796	12	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_8	6.81029847284656	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGAGCCTGCAATCCT	8951	False	NA	NA	False	NA	NA	NA	37495951	37545108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_37496072_37504783_37504853_37505931_37506119_37507682_37507793_37508464_37508519_37514743_37514879_37520860_37521001_37527867_37528193_37535526_37535767_37537753_37537930_37540421_37540582_37544028
transcript_70610.nnic	chr5	+	1747	9	NNC	ENSMUSG00000050248.12	novel	2796	12	NA	NA	-34	-15381	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_8	11.0227038425243	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGATGACTCCCAATAGCAT	8808	False	NA	NA	False	NA	NA	NA	37495808	37529727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_37496072_37504783_37504853_37505931_37506119_37507682_37507793_37508464_37508519_37514743_37514879_37520860_37521001_37527867_37528193_37529263
transcript_70613.nic	chr5	+	959	5	ISM	ENSMUSG00000050248.12	ENSMUST00000101258.5	2796	12	-143	36314	-34	-36314	5prime_fragment	FALSE	canonical	3	29	junction_3	3.16227766016838	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGAGGAAGAGTTTATTTC	8808	False	NA	NA	False	NA	NA	NA	37495808	37508794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_37496072_37504783_37504853_37505931_37506119_37507682_37507793_37508464
transcript_70614.known	chr5	-	1935	2	FSM	ENSMUSG00000048450.11	ENSMUST00000063116.10	1935	2	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGGGTTTAGTTGTG	NA	False	NA	NA	False	AATAAA	-25	NA	37981927	37977828	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_37979045_37981208
transcript_70616.known	chr5	+	3002	11	FSM	ENSMUSG00000029125.15	ENSMUST00000114126.9	3002	11	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_9	9.96794863550169	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAGATTGTGGACTTAGA	NA	False	NA	NA	False	CATAAA	-13	NA	38196085	38295109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_38196844_38249856_38249925_38262221_38262338_38263907_38263986_38264169_38264237_38273428_38273542_38278554_38278644_38284275_38284335_38285387_38285458_38292565_38292647_38293606
transcript_70617.known	chr5	+	1471	11	FSM	ENSMUSG00000029125.15	ENSMUST00000031008.13	1471	11	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_10	31.04834939252	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTATTGCAGTCAGTGAG	NA	False	NA	13	True	AATAAA	-13	NA	38196576	38294161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_38196844_38249856_38249925_38262221_38262338_38263907_38263986_38264169_38264237_38273428_38273542_38278554_38278644_38284275_38284335_38285387_38285458_38292565_38292647_38293698
transcript_70620.known	chr5	+	1473	10	FSM	ENSMUSG00000029125.15	ENSMUST00000042146.15	1473	10	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	33.2335543660691	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAGTCAGTGAGTCTCCA	NA	False	NA	19	True	AATAAA	-19	NA	38196594	38294167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_38196844_38249856_38249925_38262221_38262338_38264169_38264237_38273428_38273542_38278554_38278644_38284275_38284335_38285387_38285458_38292565_38292647_38293606
transcript_70621.known	chr5	+	900	10	FSM	ENSMUSG00000029125.15	ENSMUST00000154929.5	900	10	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	32.4550971857016	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGCAGGTTTCCGAGTG	NA	False	NA	NA	False	NA	NA	NA	38196626	38293616	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_38196844_38262221_38262338_38263907_38263986_38264169_38264237_38273428_38273542_38278554_38278644_38284275_38284335_38285387_38285458_38292565_38292647_38293606
transcript_70624.known	chr5	-	2581	5	FSM	ENSMUSG00000029126.8	ENSMUST00000031009.8	2581	5	0	0	0	0	multi-exon	TRUE	canonical	3	5	junction_1	2.8613807855649	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGGACTGTCTGTACTCA	NA	False	NA	1	True	AATAAA	-25	NA	38317251	38294535	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_38296217_38302052_38302164_38312951_38313069_38316220_38316376_38316734
transcript_70626.known	chr5	-	2978	8	FSM	ENSMUSG00000029127.16	ENSMUST00000094833.10	2978	8	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_5	10.0772526220277	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATGCTCAGTTTCTAAGC	NA	False	NA	NA	False	NA	NA	NA	38377801	38357423	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_38358658_38360839_38361002_38361088_38361172_38363232_38363307_38367961_38368009_38370651_38371728_38373790_38373958_38377666
transcript_70627.known	chr5	-	1654	6	FSM	ENSMUSG00000029127.16	ENSMUST00000143436.8	1654	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	15.2918278828922	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTTTTATATTTTGTAA	NA	False	NA	NA	False	AATAAA	-19	NA	38377769	38357592	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_38358658_38360839_38361002_38361088_38361172_38363232_38363307_38373790_38373958_38377666
transcript_70633.nic	chr5	+	1657	10	NIC	ENSMUSG00000067367.10	novel	1563	9	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	182	junction_2	844.746612604142	1362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTCTGTATCTATGATAA	NA	False	NA	13	True	AATAAA	-14	NA	38377807	38391640	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_38377980_38380477_38380576_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904_38388335_38388616_38388704_38390585_38390672_38391334
transcript_70640.known	chr5	+	1563	9	FSM	ENSMUSG00000067367.10	ENSMUST00000087514.9	1563	9	0	0	0	0	multi-exon	FALSE	canonical	3	2026	junction_5	151.553981719386	5675	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTATGATAACAAATTCTTG	NA	False	NA	23	True	AATAAA	-24	NA	38377813	38391650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_38377980_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904_38388335_38388616_38388704_38390585_38390672_38391334
transcript_70645.known	chr5	+	1504	9	FSM	ENSMUSG00000067367.10	ENSMUST00000114106.8	1504	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	758.80744222431	726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTCTGTATCTATGATAA	NA	False	NA	13	True	AATAAA	-14	NA	38378021	38391640	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_38378139_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904_38388335_38388616_38388704_38390585_38390672_38391334
transcript_70656.known	chr5	+	873	7	FSM	ENSMUSG00000067367.10	ENSMUST00000130721.8	873	7	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_2	913.07374656523	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACGGCAGAAAAACAGGAAGA	NA	False	NA	38	True	NA	NA	NA	38377825	38388047	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_38377980_38380477_38380576_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904
transcript_70659.known	chr5	+	885	6	FSM	ENSMUSG00000067367.10	ENSMUST00000132190.8	885	6	0	0	0	0	multi-exon	FALSE	canonical	2	91	junction_1	840.645133216151	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CGGCAGAAAAACAGGAAGAA	NA	False	NA	39	True	NA	NA	NA	38377870	38388048	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_38378134_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904
transcript_70661.known	chr5	+	898	5	FSM	ENSMUSG00000067367.10	ENSMUST00000154975.8	898	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	914.515821350292	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTGTGTGCCAGCCTGCGT	NA	False	NA	NA	False	NA	NA	NA	38377872	38388332	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_38377980_38381970_38382142_38385198_38385307_38385393_38385478_38387904
transcript_70669.known	chr5	+	1939	1	FSM	ENSMUSG00000067365.12	ENSMUST00000201661.3	1939	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAACAAAAAAAAACAAACC	NA	False	NA	NA	False	NA	NA	NA	38417714	38419653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_38417700_38419700
transcript_70670.known	chr5	+	1291	5	FSM	ENSMUSG00000067365.12	ENSMUST00000087511.10	1291	5	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_4	19.5751756058534	3610	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGTTAATGCAAATTTGG	NA	False	NA	NA	False	AATAAA	-25	NA	38417528	38426978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_38417837_38419340_38419483_38422155_38422315_38424522_38424629_38426402
transcript_70671.known	chr5	+	726	5	FSM	ENSMUSG00000067365.12	ENSMUST00000119047.8	726	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	95.0167748347627	1044	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCTTTTTATACTATTTA	NA	False	NA	11	True	NA	NA	NA	38417727	38425251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_38417837_38419340_38419483_38422155_38422315_38424522_38424629_38425041
transcript_70672.known	chr5	+	827	3	FSM	ENSMUSG00000067365.12	ENSMUST00000128025.2	827	3	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	17	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAACACAAGACTGTAGAGA	NA	False	NA	NA	False	CATAAA	-24	NA	38417730	38422734	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_38417837_38419340_38419483_38422155
transcript_70673.known	chr5	+	3141	6	FSM	ENSMUSG00000051596.16	ENSMUST00000114099.6	3141	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	1.93907194296653	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGGAATTGCCTCTTGC	NA	False	NA	NA	False	NA	NA	NA	38434747	38461551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_38435169_38445240_38445378_38451832_38451892_38455200_38455332_38456966_38457875_38460066
transcript_70682.known	chr5	-	2139	15	FSM	ENSMUSG00000005103.13	ENSMUST00000201260.4	2139	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	308.085372808862	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGCATGTGGAGCGTAC	NA	False	NA	-7	True	AATAAA	-11	NA	38718978	38684929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_38685256_38686867_38687013_38687279_38687454_38688357_38688469_38690826_38690915_38692526_38692684_38694481_38694570_38697355_38697590_38697846_38697928_38698143_38698222_38703016_38703198_38704286_38704435_38708719_38708811_38718422_38718540_38718858
transcript_70685.known	chr5	-	6804	4	FSM	ENSMUSG00000046572.11	ENSMUST00000057258.11	6804	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_3	106.871677986057	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTGCTCTCTCATTTCG	NA	False	NA	-5	True	AATAAA	-16	NA	38842093	38825828	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_38832197_38839827_38840126_38840535_38840602_38842021
transcript_70687.known	chr5	-	1124	3	FSM	ENSMUSG00000046572.11	ENSMUST00000180214.8	1124	3	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_2	31	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCAGGTTCATCTGTTCCC	NA	False	NA	NA	False	NA	NA	NA	38842169	38831518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_38832197_38839827_38840126_38842021
transcript_70696.known	chr5	-	1684	2	FSM	ENSMUSG00000051022.8	ENSMUST00000053116.7	1684	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGATGTTGCTCCTCTCTTT	NA	False	NA	NA	False	NA	NA	NA	39801977	39771281	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_39772748_39801759
transcript_70699.known	chr5	-	763	2	FSM	ENSMUSG00000051022.8	ENSMUST00000137142.2	763	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGAGGACCTCCTAATGC	NA	False	NA	NA	False	NA	NA	NA	39802589	39772111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_39772748_39802462
transcript_707.known	SIRV7	-	2462	5	FSM	SIRV7A	SIRV705	2462	5	0	0	0	0	multi-exon	FALSE	canonical	3	1923	junction_2	1231.81783860277	11157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAATTAGTGTTAATATGAA	NA	False	NA	NA	False	TATAAA	-17	NA	147925	1005	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV7_-_2676_2993_3112_43028_43078_114680_114989_147608
transcript_70701.known	chr5	-	1697	8	FSM	ENSMUSG00000029128.13	ENSMUST00000201422.4	1697	8	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_2	195.851880725393	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTGGGATTTTCATT	NA	False	NA	-4	True	AATAAA	-14	NA	41865464	41782318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_41783206_41784329_41784425_41790515_41790594_41793148_41793253_41845063_41845194_41855732_41855822_41860780_41860878_41865247
transcript_7071.nic	chr10	+	812	3	ISM	ENSMUSG00000038160.8	ENSMUST00000039286.5	2352	8	-35	74045	-35	-4428	5prime_fragment	FALSE	canonical	3	301	junction_2	32	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAACACACACACACACAC	NA	False	NA	NA	False	NA	NA	NA	44144318	44166242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_44144581_44162027_44162194_44165858
transcript_70712.known	chr5	-	1635	7	FSM	ENSMUSG00000029128.13	ENSMUST00000031011.12	1635	7	0	0	0	0	multi-exon	FALSE	canonical	3	424	junction_3	45.374980869295	808	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTGGGATTTTCATT	NA	False	NA	-4	True	AATAAA	-14	NA	41865497	41782318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_41783206_41790515_41790594_41793148_41793253_41845063_41845194_41855732_41855822_41860780_41860878_41865247
transcript_70714.known	chr5	-	863	7	FSM	ENSMUSG00000029128.13	ENSMUST00000202913.2	863	7	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_1	193.008419505471	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTTTTGGGATTTTCAT	NA	False	NA	-5	True	AATAAA	-13	NA	41865500	41782319	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_41782432_41790515_41790594_41793148_41793253_41845063_41845194_41855732_41855822_41860780_41860878_41865247
transcript_70716.nnic	chr5	-	1596	6	NIC	ENSMUSG00000029128.13	novel	1635	7	NA	NA	-47	0	combination_of_known_splicesites	FALSE	canonical	3	38	junction_4	194.631549343882	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTGGGATTTTCATT	NA	False	NA	-4	True	AATAAA	-14	NA	41865547	41782318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_41783206_41790515_41790594_41793148_41793253_41845063_41845194_41860780_41860878_41865247
transcript_7072.known	chr10	-	4025	7	FSM	ENSMUSG00000038151.14	ENSMUST00000105490.3	4025	7	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_6	13.6218778278017	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGGCTGGGTGGTTCGGTCC	NA	False	NA	-105	True	NA	NA	NA	44334683	44314288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_44316239_44316654_44316784_44317054_44318161_44322787_44323041_44326114_44326235_44332620_44332867_44334462
transcript_70728.known	chr5	-	372	2	FSM	ENSMUSG00000104846.2	ENSMUST00000197178.2	372	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAATTTTCCAGCTCTCTC	NA	False	NA	NA	False	GATAAA	-30	NA	43512602	43510389	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_43510700_43512540
transcript_7073.nnic	chr10	+	744	5	Antisense	novelGene_ENSMUSG00000038151.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	1.5	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTTGATGATTATGTTT	NA	False	NA	NA	False	AATATA	-12	NA	44317228	44322580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr10_+_44317329_44318670_44318850_44319642_44319731_44321191_44321320_44322331
transcript_70731.known	chr5	+	1194	9	FSM	ENSMUSG00000039765.16	ENSMUST00000142303.5	1194	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	5.04820512657717	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGCTTACTGAGTAGCT	NA	False	NA	NA	False	ATTAAA	-17	NA	43829630	43846443	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_43829747_43831033_43831158_43838630_43838720_43839040_43839146_43840441_43840544_43841381_43841556_43842599_43842763_43845465_43845603_43846259
transcript_70735.known	chr5	-	2814	11	FSM	ENSMUSG00000039753.17	ENSMUST00000196483.5	2814	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	167.474057692527	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTTTGTGTTGTGATTT	8869	False	NA	-1	True	AATAAA	-28	NA	43939451	43901957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_43902718_43908203_43908353_43915563_43916287_43917084_43917168_43918048_43918195_43920158_43920285_43922650_43922834_43925405_43925593_43928078_43928175_43930785_43931002_43939306
transcript_70739.known	chr5	-	2306	10	FSM	ENSMUSG00000039753.17	ENSMUST00000124610.6	2306	10	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_2	33.8234340562579	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTTAAAATGACAAGTTGT	8876	False	NA	NA	False	TTTAAA	-2	NA	43939444	43907947	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_43908353_43915563_43916287_43917084_43917168_43918048_43918198_43920158_43920285_43922650_43922834_43925405_43925593_43928078_43928175_43930785_43931002_43939306
transcript_70740.known	chr5	+	2856	9	FSM	ENSMUSG00000029082.18	ENSMUST00000101237.8	2856	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_6	2.97647022494766	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTATGTGAGTTGTGTTGT	NA	False	NA	NA	False	AATAAA	-19	NA	43976232	44001328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_43976436_43977819_43977947_43978951_43979088_43979608_43979692_43982669_43982747_43983605_43983699_43994802_43994890_43997772_43997833_43999338
transcript_70743.known	chr5	-	4237	9	FSM	ENSMUSG00000039753.17	ENSMUST00000087465.11	4237	9	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_1	35.8704265377483	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTGTCTGAGCATTCAT	8857	False	NA	NA	False	NA	NA	NA	43939463	43913246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_43916287_43917084_43917168_43918048_43918198_43920158_43920285_43922650_43922834_43925405_43925593_43928078_43928175_43930785_43931002_43939306
transcript_70746.known	chr5	-	2731	6	FSM	ENSMUSG00000039753.17	ENSMUST00000143316.8	2731	6	0	0	0	0	multi-exon	FALSE	canonical	3	545	junction_2	25.4762634622898	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAATTTTACAGTTCTTT	8876	False	NA	NA	False	AAAAAG	-35	NA	43939444	43918373	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_43920285_43922650_43922834_43925405_43925593_43928078_43928175_43930785_43931002_43939306
transcript_70751.nnic	chr5	-	1122	3	Genic_Genomic	ENSMUSG00000104701.2	novel	1039	1	NA	NA	-5921	2	multi-exon	FALSE	canonical	1	1	junction_2	1	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAGTAAGTACAAATGAATG	9798	False	NA	NA	False	AATAAA	-21	NA	43972006	43965044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr5_-_43965699_43967113_43967196_43971620
transcript_70752.nnic	chr5	-	1081	3	NIC	ENSMUSG00000039753.17	novel	2858	11	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	274.5	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTTTGTGTTGTGATTT	8842	False	NA	-1	True	AATAAA	-28	NA	43939478	43901957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_43902718_43908203_43908353_43939306
transcript_70754.known	chr5	+	3270	8	FSM	ENSMUSG00000029084.6	ENSMUST00000030964.6	3270	8	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_4	17.0353773551587	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAGTGCTTGGATTCAATTC	NA	False	NA	NA	False	ATTAAA	-18	NA	44025894	44069717	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_44026463_44057674_44057805_44058762_44058899_44060936_44061023_44063505_44063580_44064854_44064948_44065264_44065352_44067621
transcript_70757.nnic	chr5	-	1214	3	Antisense	novelGene_ENSMUSG00000029084.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAAACTGGTAAACATAAAA	NA	False	NA	NA	False	AATAAA	-20	NA	44026490	44020826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr5_-_44021648_44025879_44026040_44026257
transcript_70759.known	chr5	+	881	1	FSM	ENSMUSG00000029084.6	ENSMUST00000196600.2	881	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	191	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAGAAAACAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	44026201	44027082	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_44026200_44027100
transcript_7076.nnic	chr10	+	487	4	Antisense	novelGene_ENSMUSG00000038151.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	1.69967317119759	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAAAGAGTAAACACTCGG	NA	False	NA	NA	False	AATGAA	-14	NA	44317228	44321311	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr10_+_44317329_44318670_44318850_44319642_44319731_44321191
transcript_70760.known	chr5	+	774	1	FSM	ENSMUSG00000033036.10	ENSMUST00000122204.3	774	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3009	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAACAACAACAAAAAA	NA	False	NA	NA	False	AATAAA	-36	NA	44070485	44071259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_44070500_44071300
transcript_70761.known	chr5	+	635	2	FSM	ENSMUSG00000033036.10	ENSMUST00000200338.2	635	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAAACAAAACAACAA	NA	False	NA	NA	False	AATAAA	-29	NA	44070488	44071252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_44070851_44070979
transcript_70762.known	chr5	-	1228	3	FSM	ENSMUSG00000048373.9	ENSMUST00000199894.2	1228	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGTTTCCTTCTGATAC	NA	False	NA	NA	False	AATAAA	-23	NA	44139121	44136199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_44137311_44137985_44138036_44139054
transcript_70763.known	chr5	-	1161	2	FSM	ENSMUSG00000048373.9	ENSMUST00000061299.9	1161	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCACTGTTTCCTTCTGAT	NA	False	NA	NA	False	AATAAA	-21	NA	44139106	44136201	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_44137311_44139054
transcript_70764.known	chr5	-	3966	28	FSM	ENSMUSG00000029086.16	ENSMUST00000074113.13	3966	28	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_24	9.32068513939636	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTGTTTGGTCCTTAA	NA	False	NA	NA	False	AATAAA	-18	NA	44259296	44150961	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_44151839_44152416_44152457_44158118_44158188_44158611_44158636_44159127_44159244_44162227_44162321_44163506_44163576_44164364_44164446_44168536_44168591_44170217_44170311_44171437_44171510_44172099_44172247_44173907_44173993_44175634_44175739_44178149_44178274_44184024_44184178_44186951_44187112_44190285_44190350_44191688_44191764_44194765_44194984_44201658_44201749_44202861_44202926_44204839_44204961_44213219_44213426_44215967_44215995_44220467_44220527_44251736_44252111_44258989
transcript_70779.known	chr5	-	1380	7	FSM	ENSMUSG00000015806.13	ENSMUST00000015950.12	1380	7	0	0	0	0	multi-exon	FALSE	canonical	3	819	junction_4	94.8542741964395	6797	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTCTTTTTCACTCA	NA	False	NA	-19	True	AATAAA	-15	NA	45607578	45591394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45607348
transcript_7078.nnic	chr10	+	1102	4	Antisense	novelGene_ENSMUSG00000038151.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	1.69967317119759	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTAGCTTTCATGGGAAG	NA	False	NA	NA	False	ATTAAA	-23	NA	44317228	44321926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr10_+_44317329_44318670_44318850_44319642_44319731_44321191
transcript_70782.known	chr5	-	1232	7	FSM	ENSMUSG00000015806.13	ENSMUST00000118097.8	1232	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	385.068680742655	1788	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTCTTTTTCACTCA	NA	False	NA	-19	True	AATAAA	-15	NA	45607513	45591394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45607431
transcript_70785.known	chr5	-	1206	6	FSM	ENSMUSG00000015806.13	ENSMUST00000197946.5	1206	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	392.953635941952	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTACACATAGGGGTCC	NA	False	NA	6	True	AATAAA	-40	NA	45607463	45591369	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_45592021_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45607348
transcript_70789.known	chr5	-	1172	6	FSM	ENSMUSG00000015806.13	ENSMUST00000198258.5	1172	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	519.057376404574	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATAGGGGTCCTGGAAGA	NA	False	NA	13	True	NA	NA	NA	45607518	45591362	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45604917_45605011_45607431
transcript_70797.known	chr5	+	338	2	FSM	ENSMUSG00000105255.2	ENSMUST00000196216.2	338	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCCAAACGCACTTCGAGG	NA	False	NA	NA	False	NA	NA	NA	45591730	45607480	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_45591931_45607342
transcript_7081.nnic	chr10	+	670	4	Antisense	novelGene_ENSMUSG00000038151.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_3	2.16024689946929	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTTCCTCGTCTTAGCT	NA	False	NA	NA	False	ATTAAA	-10	NA	44317228	44322634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr10_+_44317329_44318670_44318850_44319642_44319731_44322331
transcript_70810.known	chr5	+	2267	13	FSM	ENSMUSG00000039682.13	ENSMUST00000046122.11	2267	13	0	0	0	0	multi-exon	FALSE	canonical	3	2266	junction_5	182.488412874169	10058	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCAGTTCTGTGAAGGGTC	NA	False	NA	35	True	AATAAA	-34	NA	45650715	45670033	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
transcript_70811.known	chr5	+	838	6	FSM	ENSMUSG00000039682.13	ENSMUST00000137699.3	838	6	0	0	0	0	multi-exon	FALSE	canonical	3	2266	junction_5	195.982039993465	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCACTGTGGGCAGTGCC	NA	False	NA	NA	False	NA	NA	NA	45650845	45658087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744
transcript_70815.known	chr5	+	636	2	FSM	ENSMUSG00000015804.15	ENSMUST00000119579.3	636	2	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	0	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTGTTGTTGTTTGTA	7398	False	NA	22	True	AGTAAA	-11	NA	45677636	45682940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_45677827_45682494
transcript_70816.known	chr5	+	734	3	FSM	ENSMUSG00000015804.15	ENSMUST00000118833.3	734	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	958.5	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCCTTAGACTGTTAGAGT	7406	False	NA	61	True	NA	NA	NA	45677644	45682979	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_45677827_45679777_45679845_45682494
transcript_70817.nic	chr5	-	1703	4	ISM	ENSMUSG00000015879.9	ENSMUST00000016023.9	4236	16	105190	0	2118	0	3prime_fragment	FALSE	canonical	2	3	junction_1	1.24721912892465	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACCACCTGTCTTATTAAT	NA	False	NA	NA	False	AATAAA	-42	NA	45691766	45687046	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_45688173_45689099_45689300_45690072_45690178_45691494
transcript_70818.known	chr5	-	1007	1	FSM	ENSMUSG00000104986.2	ENSMUST00000196242.2	1007	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATGTGTGTGTGTGTCAT	5102	False	NA	NA	False	AATAAA	-32	NA	45827050	45826043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_45826000_45827000
transcript_70819.known	chr5	-	4884	7	FSM	ENSMUSG00000015882.19	ENSMUST00000016026.14	4884	7	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	18.7349939951952	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACACTGTCGGTGTGTGGT	NA	False	NA	NA	False	AGTAAA	-30	NA	46014855	45887732	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_45891828_45893072_45893167_45904397_45904650_45932733_45932864_45933761_45933842_45952634_45952701_46014688
transcript_70820.known	chr5	-	5708	7	FSM	ENSMUSG00000015882.19	ENSMUST00000045586.13	5708	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	22.5197444232586	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAGATGTTTTTCAAAGT	NA	False	NA	-4	True	AATAAA	-21	NA	46014957	45854522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_45859340_45893072_45893167_45904397_45904650_45932733_45932864_45933761_45933842_45952634_45952701_46014688
transcript_70825.known	chr5	-	5463	6	FSM	ENSMUSG00000015882.19	ENSMUST00000190036.7	5463	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	19.1562000407179	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTTCAGATGTTTTTCAA	NA	False	NA	-7	True	AATAAA	-18	NA	46014809	45854525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_45859340_45904397_45904650_45932733_45932864_45933761_45933842_45952634_45952701_46014688
transcript_70829.known	chr5	-	678	4	FSM	ENSMUSG00000015882.19	ENSMUST00000156295.2	678	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	6.84754619472471	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCATTTGTTATCCGCCTC	NA	False	NA	NA	False	NA	NA	NA	46014957	45932600	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_45932864_45933761_45933842_45952634_45952701_46014688
transcript_70831.known	chr5	-	439	5	FSM	ENSMUSG00000015882.19	ENSMUST00000187615.7	439	5	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_4	27.6077434789589	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTTGCTCAGGAATTAAT	NA	False	NA	NA	False	NA	NA	NA	46014823	45904617	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_45904650_45932733_45932864_45933761_45933842_45952634_45952701_46014692
transcript_70832.known	chr5	+	3703	21	FSM	ENSMUSG00000015880.14	ENSMUST00000117396.3	3703	21	0	0	0	0	multi-exon	FALSE	canonical	3	453	junction_14	43.4953733171702	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAACAGTTGTTCTGAGA	NA	False	NA	NA	False	ATTAAA	-18	NA	45827260	45857888	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_45827476_45828361_45828566_45829614_45829844_45831699_45831846_45832110_45832196_45833290_45833484_45833933_45834084_45835688_45835830_45837189_45837314_45838713_45838798_45839068_45839249_45844653_45844765_45845902_45846023_45848943_45849169_45850498_45850681_45851093_45851269_45852995_45853158_45853374_45853511_45853814_45853887_45856182_45856253_45857189
transcript_70839.nic	chr5	+	1985	11	ISM	ENSMUSG00000015880.14	ENSMUST00000117396.3	3703	21	-83	18489	-83	2031	5prime_fragment	FALSE	canonical	3	458	junction_5	29.7323056623599	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCTGATGTATATATTTAG	NA	False	NA	NA	False	AATAAA	-29	NA	45827177	45839399	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_45827476_45828361_45828566_45829614_45829844_45831699_45831846_45832110_45832196_45833290_45833484_45833933_45834084_45835688_45835830_45837189_45837314_45838713_45838798_45839068
transcript_7084.nnic	chr10	+	717	4	Antisense	novelGene_ENSMUSG00000038151.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_2	0.816496580927726	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCGTCTTAGCTAAAGCCA	NA	False	NA	NA	False	ATTAAA	-17	NA	44317228	44322641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr10_+_44317329_44318670_44318850_44321191_44321320_44322331
transcript_70852.known	chr5	+	1616	9	FSM	ENSMUSG00000029089.9	ENSMUST00000030968.7	1616	9	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_5	8.92941067484299	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTAGTTCTACATATAT	NA	False	NA	13	True	ATTAAA	-21	NA	48529670	48546187	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_48529838_48531521_48531590_48531725_48531881_48532884_48532953_48534416_48534508_48536671_48536807_48537465_48537574_48539128_48539210_48545444
transcript_7086.nic	chr10	-	1262	4	ISM	ENSMUSG00000038151.14	ENSMUST00000105490.3	4025	7	-347	8424	-286	0	5prime_fragment	FALSE	canonical	3	20	junction_3	3.39934634239519	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAACATGTTGTCTAATTA	NA	False	NA	NA	False	NA	NA	NA	44335030	44322712	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_44323041_44326114_44326235_44332620_44332867_44334462
transcript_70860.known	chr5	+	1422	8	FSM	ENSMUSG00000029089.9	ENSMUST00000200566.5	1422	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	26.2717354134182	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGTAGTTCTACATATATG	NA	False	NA	14	True	ATTAAA	-22	NA	48529774	48546188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_48529838_48531521_48531590_48531725_48531881_48532884_48532953_48536671_48536807_48537465_48537574_48539128_48539210_48545444
transcript_70868.known	chr5	-	4480	19	FSM	ENSMUSG00000029090.13	ENSMUST00000030971.7	4480	19	0	0	0	0	multi-exon	FALSE	canonical	3	391	junction_6	33.7942668086734	215	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCATTGTGCTGGTGGCTT	NA	False	NA	-10	True	AATAAA	-14	NA	50216348	50117297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_50118857_50118989_50119086_50121032_50121179_50128031_50128156_50129292_50129418_50136284_50136494_50136701_50136916_50144815_50145020_50147466_50147629_50155556_50155713_50156474_50156677_50159196_50159362_50164090_50164305_50166677_50166839_50168832_50168905_50170734_50170807_50174168_50174241_50183048_50183121_50215893
transcript_70873.known	chr5	-	2375	14	FSM	ENSMUSG00000029169.12	ENSMUST00000200186.5	2375	14	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_4	209.215072940651	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTTCAATCCAAGGAATAT	NA	False	NA	NA	False	NA	NA	NA	52347719	52308034	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_52308121_52309151_52309322_52311378_52311570_52314796_52314912_52317571_52317764_52318234_52318344_52318928_52319079_52319870_52319958_52324042_52324211_52327262_52327482_52328765_52328926_52338323_52338518_52341809_52342246_52347621
transcript_70875.known	chr5	-	2550	12	FSM	ENSMUSG00000029169.12	ENSMUST00000199321.5	2550	12	0	0	0	0	multi-exon	FALSE	canonical	3	749	junction_8	40.15610036712	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTTAGTTTAAAGTGTAT	NA	False	NA	NA	False	ATTAAA	-16	NA	52347831	52311067	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_52311570_52314796_52314920_52317571_52317764_52318234_52318344_52318928_52319079_52319870_52319958_52324042_52324211_52327262_52327482_52328765_52328926_52338323_52338518_52341809_52342246_52347621
transcript_70876.nic	chr5	-	388	2	ISM	ENSMUSG00000029169.12	ENSMUST00000199321.5	2550	12	-79	31079	-54	10	5prime_fragment	FALSE	canonical	3	854	junction_1	0	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAAAGAATTGAGAGCTT	NA	False	NA	NA	False	NA	NA	NA	52347910	52342146	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_52342246_52347621
transcript_70881.nic	chr5	+	1555	4	ISM	ENSMUSG00000097145.6	ENSMUST00000198720.2	837	6	-62	47887	-21	25	5prime_fragment	FALSE	canonical	2	5	junction_2	5.73488351136175	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAAGATATGTATTCAAT	NA	False	NA	NA	False	NA	NA	NA	52347992	52355351	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_52348280_52350259_52350321_52352142_52352233_52354234
transcript_70884.known	chr5	+	2120	4	FSM	ENSMUSG00000097145.6	ENSMUST00000180601.6	2120	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	7.93025150224688	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	52348020	52355326	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_52348280_52350259_52350939_52352142_52352233_52354234
transcript_70885.nnic	chr5	+	1469	3	NIC	ENSMUSG00000097145.6	novel	837	6	NA	NA	-21	29	combination_of_known_splicesites	FALSE	canonical	1	2	junction_2	8.5	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATATGTATTCAATGTAG	NA	False	NA	NA	False	NA	NA	NA	52347992	52355355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_52348280_52350259_52350321_52354234
transcript_70887.known	chr5	-	6273	8	FSM	ENSMUSG00000039252.12	ENSMUST00000199942.5	6273	8	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_6	6.36636570147348	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCGCTTTGATCTCTGGTC	NA	False	NA	NA	False	AATAAA	-18	NA	52723645	52690858	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_52696123_52703794_52703960_52711744_52711915_52713003_52713076_52717504_52717577_52719467_52719540_52721307_52721380_52723259
transcript_70889.known	chr5	-	5252	11	FSM	ENSMUSG00000029173.13	ENSMUST00000031069.13	5252	11	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	10.2493902257647	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGAAGTCTTCTTGCACT	NA	False	NA	24	True	AATAAA	-41	NA	52827050	52797428	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_52801450_52804457_52804549_52804939_52805034_52813355_52813448_52813567_52813698_52817971_52818075_52821509_52821664_52822577_52822737_52823329_52823449_52826240_52826396_52826916
transcript_70896.known	chr5	+	2485	13	FSM	ENSMUSG00000029179.15	ENSMUST00000113904.9	2485	13	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_12	14.4327944472148	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTTCAGTTGTTATTCC	NA	False	NA	21	True	ATTAAA	-17	NA	52940395	52982007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_52940557_52941330_52941450_52942439_52942523_52953318_52953595_52953923_52954002_52961720_52961794_52964298_52964450_52965601_52965703_52973142_52973265_52973503_52973580_52975948_52976001_52976462_52976608_52980959
transcript_70898.known	chr5	+	5743	12	FSM	ENSMUSG00000029179.15	ENSMUST00000031077.13	5743	12	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_6	13.7197450763007	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTGTGCTCATTCCATA	NA	False	NA	NA	False	ATTAAA	-20	NA	52940395	52980913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_52940557_52941330_52941450_52942439_52942523_52953318_52953595_52953923_52954002_52961720_52961794_52964298_52964450_52965601_52965703_52973142_52973265_52973503_52973580_52975948_52976001_52976462
transcript_70904.known	chr5	+	3854	28	FSM	ENSMUSG00000029176.14	ENSMUST00000031072.14	3854	28	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_6	48.5716418249863	427	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTAGCGTGTTTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	52991353	53025139	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_52991735_52993019_52993126_52996963_52997097_52999057_52999133_52999246_52999274_52999365_52999411_53000162_53000248_53000828_53000934_53002665_53002750_53003973_53004061_53005332_53005398_53005935_53005979_53006096_53006174_53007799_53007901_53007984_53008037_53012925_53012982_53013185_53013233_53014149_53014207_53014512_53014570_53016454_53016549_53018584_53018683_53019290_53019353_53019432_53019472_53019563_53019666_53020928_53021004_53021820_53021995_53023235_53023360_53023736
transcript_7091.known	chr10	+	772	2	FSM	ENSMUSG00000111730.2	ENSMUST00000213337.2	772	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGGACAATGCCCATCCC	NA	False	NA	NA	False	NA	NA	NA	44465923	44468569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_44466552_44468425
transcript_70914.known	chr5	+	931	4	FSM	ENSMUSG00000061461.12	ENSMUST00000204465.2	931	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	153.686549689801	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTGGTGTGTACTGTT	3446	False	NA	13	True	ATTAAA	-14	NA	53424518	53435882	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_53424701_53425364_53425413_53434484_53434542_53435238
transcript_70918.known	chr5	+	922	3	FSM	ENSMUSG00000061461.12	ENSMUST00000147148.5	922	3	0	0	0	0	multi-exon	FALSE	canonical	3	318	junction_1	5	2590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTGGTGTGTACTGTT	3407	False	NA	13	True	ATTAAA	-14	NA	53424479	53435882	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_53424701_53434484_53434542_53435238
transcript_70922.known	chr5	+	2076	1	FSM	ENSMUSG00000061461.12	ENSMUST00000204839.2	2076	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAACAA	3459	False	NA	NA	False	NA	NA	NA	53424531	53426607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_53424500_53426600
transcript_70923.known	chr5	+	5252	11	FSM	ENSMUSG00000039191.13	ENSMUST00000087360.9	5252	11	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	131.697532247191	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTGTAGATGTCTTCTGT	NA	False	NA	12	True	AATAAA	-18	NA	53713175	53814700	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_53713246_53784724_53784764_53793303_53793400_53799365_53799532_53803211_53803387_53806712_53806851_53807004_53807118_53808681_53808823_53809948_53810105_53810423_53810528_53810646
transcript_70927.known	chr5	+	5459	11	FSM	ENSMUSG00000039191.13	ENSMUST00000037618.13	5459	11	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	139.803576492163	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGATGTCTTCTGTGGGA	NA	False	NA	16	True	AATAAA	-22	NA	53747555	53814704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_53747829_53784724_53784764_53793303_53793400_53799365_53799532_53803211_53803387_53806712_53806851_53807004_53807118_53808681_53808823_53809948_53810105_53810423_53810528_53810646
transcript_70929.known	chr5	+	5440	11	FSM	ENSMUSG00000039191.13	ENSMUST00000113865.5	5440	11	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	104.823470654239	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGATGTCTTCTGTGGGA	NA	False	NA	16	True	AATAAA	-22	NA	53747812	53814704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_53748067_53784724_53784764_53793303_53793400_53799365_53799532_53803211_53803387_53806712_53806851_53807004_53807118_53808681_53808823_53809948_53810105_53810423_53810528_53810646
transcript_7093.known	chr10	+	10933	15	FSM	ENSMUSG00000019849.12	ENSMUST00000099858.4	10933	15	0	0	0	0	multi-exon	FALSE	canonical	3	732	junction_5	67.3298687395854	496	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTATTTTTACTTATGG	NA	False	NA	NA	False	TATAAA	-15	NA	44943298	45043294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_44943472_44948148_44948224_44967088_44967223_44968757_44968889_44971076_44971287_44973488_44973611_44983867_44983974_44991158_44991351_44996738_44996937_45002059_45002164_45024080_45024218_45026531_45026627_45029150_45029283_45031611_45031769_45034327
transcript_70932.nic	chr5	+	335	4	ISM	ENSMUSG00000039191.13	ENSMUST00000087360.9	5252	11	-88	15293	40	0	5prime_fragment	FALSE	canonical	3	64	junction_1	176.312853253024	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTGGAAGAAAAAAAAAGAGC	NA	False	NA	NA	False	NA	NA	NA	53713087	53799407	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_53713246_53784724_53784764_53793303_53793400_53799365
transcript_70933.nic	chr5	+	369	4	ISM	ENSMUSG00000039191.13	ENSMUST00000037618.13	5459	11	81	15297	-73	0	5prime_fragment	FALSE	canonical	3	36	junction_1	189.511653115756	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTGGAAGAAAAAAAAAGAGC	NA	False	NA	NA	False	NA	NA	NA	53747636	53799407	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_53747829_53784724_53784764_53793303_53793400_53799365
transcript_70935.known	chr5	+	1519	1	FSM	ENSMUSG00000039191.13	ENSMUST00000201721.2	1519	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTTCGAGACAGGGTTT	NA	False	NA	NA	False	NA	NA	NA	53713047	53714566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_53713000_53714600
transcript_70936.nnic	chr5	-	514	3	NNC	ENSMUSG00000107111.2	novel	268	3	NA	NA	194	170	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	1	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATATGCATTTAATCCCAG	3091	False	NA	NA	False	NA	NA	NA	53704470	53703522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_53703801_53703968_53704074_53704339
transcript_70937.known	chr5	-	268	3	FSM	ENSMUSG00000107111.2	ENSMUST00000202154.2	268	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTGCATAGAAACTGGTTG	2897	False	NA	NA	False	NA	NA	NA	53704664	53703692	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_53703801_53703968_53704074_53704609
transcript_70942.known	chr5	+	2242	21	FSM	ENSMUSG00000039178.10	ENSMUST00000201958.4	2242	21	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	19.8148303045976	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATACAGATATCTCTAATAA	NA	False	NA	NA	False	ATTAAA	-20	NA	53966995	54061305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_53967201_53986691_53986765_53987796_53987841_53990311_53990388_53992513_53992589_53993937_53994002_53995265_53995313_53995468_53995580_54003542_54003616_54005503_54005543_54007179_54007293_54014189_54014265_54017485_54017549_54029594_54029680_54032228_54032274_54041003_54041037_54044695_54044806_54046657_54046750_54054332_54054449_54058918_54058990_54060673
transcript_70953.nnic	chr5	+	1222	13	NNC	ENSMUSG00000039178.10	novel	2273	21	NA	NA	10	7568	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_12	24.4369938140244	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTATATGTGTCTTCAT	NA	False	NA	NA	False	AATAAA	-19	NA	53966978	54014844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_53967201_53986691_53986765_53987796_53987843_53990311_53990388_53992513_53992589_53993937_53994002_53995265_53995313_53995468_53995580_54003542_54003616_54005503_54005543_54007179_54007293_54014189_54014265_54014636
transcript_70957.nnic	chr5	-	615	3	Genic_Genomic	ENSMUSG00000104563.2	novel	2630	1	NA	NA	-91	4448	multi-exon	FALSE	canonical	1	1	junction_1	25.5	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATTGTCTTGGCTACATT	NA	False	NA	NA	False	NA	NA	NA	60113574	60106405	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr5_-_60106620_60107282_60107432_60113322
transcript_70959.known	chr5	+	2008	4	FSM	ENSMUSG00000060512.8	ENSMUST00000081747.8	2008	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0.942809041582063	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACGGTATATGTGTCTCCC	1785	False	NA	NA	False	ATTAAA	-22	NA	63969705	64056968	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_63969939_64033792_64033843_64053772_64053827_64055297
transcript_7096.known	chr10	+	1853	4	FSM	ENSMUSG00000019848.15	ENSMUST00000019994.14	1853	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	0.942809041582063	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAAGATGACTTTCTTGC	NA	False	NA	NA	False	AATAAA	-24	NA	45165400	45194548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_45165672_45190656_45191376_45192526_45192636_45193794
transcript_70963.known	chr5	-	3241	7	FSM	ENSMUSG00000047881.15	ENSMUST00000154169.4	3241	7	0	0	0	0	multi-exon	FALSE	canonical	3	376	junction_5	64.4360147743481	644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCTCAGTCTGCTAATCT	NA	False	NA	NA	False	NA	NA	NA	64126240	64066239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_64068495_64082077_64082217_64084331_64084569_64087820_64087879_64093365_64093438_64095148_64095377_64125988
transcript_70969.known	chr5	-	3093	8	FSM	ENSMUSG00000047881.15	ENSMUST00000087327.13	3093	8	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_7	231.259726767308	501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAGCGACATCTTACAGGA	NA	False	NA	-13	True	AATAAA	-23	NA	64126166	64066407	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_64068495_64082077_64082217_64084331_64084569_64087820_64087879_64093365_64093438_64095148_64095377_64097011_64097106_64125988
transcript_70970.known	chr5	-	494	2	FSM	ENSMUSG00000047881.15	ENSMUST00000128967.2	494	2	0	0	0	0	multi-exon	FALSE	canonical	3	541	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCACGGCGACAAGGCGAG	5422	False	NA	NA	False	CATAAA	-27	NA	64088120	64084374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_64084569_64087820
transcript_70972.known	chr5	+	2369	14	FSM	ENSMUSG00000029171.13	ENSMUST00000087324.7	2369	14	0	0	0	0	multi-exon	FALSE	canonical	3	609	junction_6	76.13589532023	570	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATAAGGTTTATTTTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	64250292	64285694	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260804_64261056_64261251_64263097_64263288_64263950_64264049_64265011_64265193_64265512_64265607_64267858_64267989_64269350_64269541_64273642_64273777_64285119
transcript_70984.known	chr5	+	1166	2	FSM	ENSMUSG00000029174.19	ENSMUST00000129389.8	1166	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAAAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	64317553	64331601	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_64317849_64330730
transcript_70985.known	chr5	-	2879	4	FSM	ENSMUSG00000105402.5	ENSMUST00000198582.5	2879	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	4.89897948556636	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTGTTTTGTTTGTTTG	NA	False	NA	NA	False	TTTAAA	-18	NA	64768043	64751199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_64753667_64759324_64759493_64767442_64767499_64767855
transcript_7099.nnic	chr10	+	1629	5	NNC	ENSMUSG00000019848.15	novel	1853	4	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	10.280442597476	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAAGATGACTTTCTTGC	NA	False	NA	NA	False	AATAAA	-24	NA	45165465	45194548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_45165672_45190656_45191005_45191163_45191376_45192526_45192636_45193794
transcript_70990.nnic	chr5	-	1424	3	NIC	ENSMUSG00000105402.5	novel	2879	4	NA	NA	-86	-2	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	10.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGATTCTGTGAATCATTCA	NA	False	NA	NA	False	AATAAA	-12	NA	64768129	64752572	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_64753667_64767442_64767499_64767855
transcript_70995.nnic	chr5	+	1882	6	NNC	ENSMUSG00000029178.15	novel	298	4	NA	NA	-5773	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	263.203039496127	50	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTATCCAGCCTATTAGTC	NA	False	NA	3	True	AGTAAA	-14	NA	64954957	64986893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_64955374_64974077_64974174_64979216_64979701_64980221_64980373_64984452_64984614_64986319
transcript_70996.known	chr5	+	5221	6	FSM	ENSMUSG00000029178.15	ENSMUST00000165536.8	5221	6	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_4	186.681547025945	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACATAATCATGTGATTACT	NA	False	NA	8	True	AATAAA	-16	NA	64960730	64990244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_64961135_64974077_64974174_64979216_64979701_64980221_64980373_64984452_64984614_64986319
transcript_71.known	ERCC-00148	+	478	1	FSM	ERCC-00148A	DQ883642	478	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	478	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00148_+_0_500
transcript_71002.nnic	chr5	+	1290	4	NNC	ENSMUSG00000029178.15	novel	4016	3	NA	NA	-5836	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	319.679005670793	385	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGTGCTGTGGATGGC	NA	False	NA	18	True	AATAAA	-18	NA	64954894	64980452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_64955374_64974077_64974174_64979216_64979701_64980221
transcript_71005.known	chr5	+	1026	4	FSM	ENSMUSG00000029178.15	ENSMUST00000200587.5	1026	4	0	0	0	0	multi-exon	FALSE	canonical	3	600	junction_1	49.9266128098699	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGTGCTGTGGATGGC	NA	False	NA	18	True	AATAAA	-18	NA	64960919	64980452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_64961135_64974077_64974174_64979216_64979701_64980221
transcript_71008.nic	chr5	+	1108	4	NIC	ENSMUSG00000029178.15	novel	1562	6	NA	NA	-132	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	314.494656375731	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGTGCTGTGGATGGC	8114	False	NA	18	True	AATAAA	-18	NA	64969549	64980452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_64969847_64974077_64974174_64979216_64979701_64980221
transcript_71012.known	chr5	-	572	2	FSM	ENSMUSG00000097640.8	ENSMUST00000180470.2	572	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTGAGCTTGGTGCTAGGC	NA	False	NA	NA	False	NA	NA	NA	64961459	64959815	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_64960083_64961154
transcript_71013.known	chr5	+	2938	14	FSM	ENSMUSG00000029185.15	ENSMUST00000031080.15	2938	14	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	7.03667484678724	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCATTTCTCCTTTCGTGA	NA	False	NA	NA	False	ATTAAA	-13	NA	65127413	65199229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_65127488_65137050_65137407_65153157_65153246_65163140_65163255_65163376_65163487_65166330_65166466_65172658_65172812_65178944_65179069_65185752_65185845_65187407_65187570_65188597_65188738_65191714_65191788_65196030_65196085_65197966
transcript_71021.known	chr5	-	956	7	FSM	ENSMUSG00000037913.13	ENSMUST00000212194.2	956	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.15470053837925	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGCTTAGTATTTCTCAT	NA	False	NA	NA	False	AATAAA	-21	NA	65249448	65229452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_65229669_65231093_65231214_65232905_65233167_65237264_65237430_65248701_65248769_65248908_65249024_65249436
transcript_71024.nnic	chr5	-	606	3	NNC	ENSMUSG00000037913.13	novel	1012	8	NA	NA	33827	2879	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAACATTTGGATGCGATAC	NA	False	NA	NA	False	AAAAAG	-1	NA	65215100	65208809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_65209129_65211568_65211727_65214971
transcript_71027.nic	chr5	+	804	6	ISM	ENSMUSG00000037890.14	ENSMUST00000204375.3	1924	12	-168	8526	-124	-8526	5prime_fragment	FALSE	canonical	3	27	junction_5	6.05309838016862	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATATGCTTATAATTCCAT	8426	False	NA	NA	False	TATAAA	-21	NA	65356914	65373360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_65357104_65359902_65359995_65360294_65360361_65363752_65363879_65370157_65370274_65373145
transcript_7103.known	chr10	+	1369	4	FSM	ENSMUSG00000019848.15	ENSMUST00000161803.2	1369	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	13.6707311029399	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACGTATTCCTTACTGTTA	NA	False	NA	NA	False	AATAAA	-13	NA	45165497	45194213	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_45165672_45190656_45191376_45192578_45192636_45193794
transcript_71030.known	chr5	+	3381	26	FSM	ENSMUSG00000037890.14	ENSMUST00000204647.3	3381	26	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_5	5.73606136647787	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGATTGCATGCCCCCTAT	8571	False	NA	NA	False	NA	NA	NA	65357059	65401929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_65357104_65359902_65359995_65360294_65360361_65363752_65363879_65370157_65370274_65373145_65373262_65377778_65377860_65378961_65379075_65379332_65379507_65380371_65380443_65380853_65381027_65381111_65381227_65382030_65382138_65382633_65382757_65384386_65384537_65385528_65385677_65385798_65386004_65388298_65388459_65388620_65388732_65391439_65391550_65396900_65396959_65398197_65398339_65398414_65398498_65398855_65398940_65400661_65400809_65401462
transcript_71033.known	chr5	-	3952	25	FSM	ENSMUSG00000029191.17	ENSMUST00000203471.3	3952	25	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_1	103.759328563213	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACCACCTGGAGCCGAGT	-14	True	NA	NA	False	AATAAA	-16	NA	65492961	65419944	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_65420493_65421585_65421775_65423444_65423659_65426290_65426437_65429483_65429602_65429720_65429876_65431293_65431393_65431717_65431814_65432724_65432863_65433032_65433125_65434699_65434815_65436053_65436167_65436799_65437158_65442191_65442297_65445232_65445413_65448429_65448538_65451000_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
transcript_71034.known	chr5	-	4699	25	FSM	ENSMUSG00000029191.17	ENSMUST00000172732.8	4699	25	0	0	0	0	multi-exon	TRUE	canonical	3	281	junction_12	79.0184138174275	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTACTGAGTCTTGCCCCT	-17	True	NA	-4	True	AATAAA	-19	NA	65492964	65419194	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_65420490_65421585_65421775_65423444_65423659_65426290_65426437_65429483_65429602_65429720_65429876_65431293_65431393_65431717_65431814_65432724_65432863_65433032_65433125_65434699_65434815_65436053_65436164_65436799_65437158_65442191_65442297_65445232_65445413_65448429_65448538_65451000_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
transcript_71035.known	chr5	-	4751	25	FSM	ENSMUSG00000029191.17	ENSMUST00000204965.3	4751	25	0	0	0	0	multi-exon	FALSE	canonical	3	270	junction_12	80.615847887097	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTACTGAGTCTTGCCCCT	NA	False	NA	-4	True	AATAAA	-19	NA	65493013	65419194	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_65420490_65421585_65421775_65423444_65423659_65426290_65426437_65429483_65429602_65429720_65429876_65431293_65431393_65431717_65431814_65432724_65432863_65433032_65433125_65434699_65434815_65436053_65436167_65436799_65437158_65442191_65442297_65445232_65445413_65448429_65448538_65451000_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
transcript_7104.nnic	chr10	+	607	3	NNC	ENSMUSG00000019848.15	novel	784	3	NA	NA	-20	-134143	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATCGCAACTCAAACCCAG	NA	False	NA	NA	False	AATAAA	-17	NA	45054173	45057067	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_45054289_45056489_45056668_45056753
transcript_71040.nic	chr5	-	1701	13	ISM	ENSMUSG00000029191.17	ENSMUST00000203471.3	3952	25	-66	17149	-14	-15505	5prime_fragment	FALSE	canonical	3	498	junction_1	41.5333701176937	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGTCCAGCCAAGAAGGAG	NA	False	NA	NA	False	AAAAAG	-6	NA	65493027	65437093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_65437158_65442191_65442297_65445232_65445413_65448429_65448538_65451000_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
transcript_71043.nic	chr5	-	1131	9	ISM	ENSMUSG00000029191.17	ENSMUST00000203471.3	3952	25	-66	31169	-14	17200	5prime_fragment	FALSE	canonical	3	518	junction_2	41.2340878400384	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCTTACAACGAAACAGAG	NA	False	NA	NA	False	AAGAAA	-1	NA	65493027	65451113	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
transcript_71045.nic	chr5	-	586	5	ISM	ENSMUSG00000029191.17	ENSMUST00000203471.3	3952	25	-66	40507	-14	7862	5prime_fragment	FALSE	canonical	3	537	junction_2	34.5144897108446	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAGAAAACGTTAAGACTA	NA	False	NA	NA	False	NA	NA	NA	65493027	65460451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
transcript_71048.known	chr5	-	485	4	FSM	ENSMUSG00000029191.17	ENSMUST00000203644.2	485	4	0	0	0	0	multi-exon	FALSE	canonical	3	537	junction_1	39.3474550920669	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATGTCTTGTGTGGTAA	-9	True	NA	NA	False	NA	NA	NA	65492956	65468313	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_65468507_65470300_65470377_65476747_65476874_65492866
transcript_71049.nic	chr5	+	2698	4	ISM	ENSMUSG00000029195.11	ENSMUST00000031096.11	3540	5	23561	0	23467	0	3prime_fragment	FALSE	canonical	3	98	junction_2	21.6024689946929	68	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTGTCTTAGACTTCG	NA	False	NA	24	True	AAAAAG	-6	NA	65529217	65541350	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_65529804_65533022_65533292_65536270_65537415_65540651
transcript_71052.nnic	chr5	+	667	3	NNC	ENSMUSG00000029195.11	novel	1954	4	NA	NA	-154	-7738	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATATGTTTGTCTTGGCAT	NA	False	NA	NA	False	NA	NA	NA	65505502	65529133	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_65505910_65527601_65527743_65529014
transcript_7106.known	chr10	-	525	2	FSM	ENSMUSG00000090088.2	ENSMUST00000162062.2	525	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGGTGGCTACTATGTTC	NA	False	NA	NA	False	AATAAA	-19	NA	45165520	45163406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_45163730_45165318
transcript_71069.known	chr5	-	738	8	FSM	ENSMUSG00000047215.15	ENSMUST00000057885.13	738	8	0	0	0	0	multi-exon	FALSE	canonical	3	5084	junction_7	3201.89202994551	60451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548787	65545706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_65545785_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
transcript_71070.known	chr5	-	680	7	FSM	ENSMUSG00000047215.15	ENSMUST00000120094.5	680	7	0	0	0	0	multi-exon	FALSE	canonical	3	5084	junction_6	3284.20622914511	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGCAGAAGATTTTACATG	NA	False	NA	-120	True	ATTAAA	-32	NA	65548723	65545820	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
transcript_71071.known	chr5	-	675	7	FSM	ENSMUSG00000047215.15	ENSMUST00000196667.5	675	7	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	5003.25345539169	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTATATATTGATTTGTG	NA	False	NA	-20	True	AATAAA	-2	NA	65548329	65545720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_65545811_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288
transcript_71072.known	chr5	-	1193	5	FSM	ENSMUSG00000047215.15	ENSMUST00000118543.8	1193	5	0	0	0	0	multi-exon	FALSE	canonical	3	9546	junction_4	1705.30515964152	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548348	65545706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288
transcript_71073.known	chr5	-	2651	2	FSM	ENSMUSG00000047215.15	ENSMUST00000140879.2	2651	2	0	0	0	0	multi-exon	FALSE	canonical	3	5084	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGTGTGTCCTTGTCTTT	NA	False	NA	-7	True	AATAAA	-15	NA	65548741	65545707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_65548336_65548718
transcript_71074.known	chr5	-	431	2	FSM	ENSMUSG00000047215.15	ENSMUST00000151917.6	431	2	0	0	0	0	multi-exon	FALSE	canonical	3	8565	junction_1	0	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65546257	65545706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_65545785_65545904
transcript_71075.known	chr5	-	456	3	FSM	ENSMUSG00000047215.15	ENSMUST00000147966.2	456	3	0	0	0	0	multi-exon	FALSE	canonical	3	8565	junction_1	3040	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAATTTGGGCTCTTTTGGG	NA	False	NA	-49	True	NA	NA	NA	65546716	65545749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_65545785_65545904_65546023_65546413
transcript_71077.known	chr5	+	2996	11	FSM	ENSMUSG00000029199.12	ENSMUST00000031101.10	2996	11	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	106.686643962588	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCATGGCTGTCCATATCA	6929	False	NA	NA	False	GATAAA	-34	NA	65548882	65568036	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_65549017_65549677_65549733_65551283_65551378_65552707_65552789_65554945_65555103_65555173_65555232_65557189_65557319_65559953_65560100_65561510_65561582_65562672_65562785_65566077
transcript_71081.known	chr5	+	1668	11	FSM	ENSMUSG00000029199.12	ENSMUST00000122026.6	1668	11	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_10	33.1264244976726	1989	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGCGTGTGTGTATGTGT	6886	False	NA	48	True	AAAAAG	-11	NA	65548839	65566550	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_65549017_65549562_65549733_65551283_65551378_65552707_65552789_65554945_65555103_65555173_65555232_65557189_65557319_65559953_65560100_65561510_65561582_65562672_65562785_65566077
transcript_71082.known	chr5	+	622	4	FSM	ENSMUSG00000029199.12	ENSMUST00000126036.2	622	4	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_1	27.1456974286698	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACTCTCTCTGAATTAAT	6953	False	NA	NA	False	TATAAA	-43	NA	65548906	65552955	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_65549017_65549562_65549733_65551283_65551378_65552707
transcript_71083.known	chr5	+	1759	3	FSM	ENSMUSG00000029199.12	ENSMUST00000139847.8	1759	3	0	0	0	0	multi-exon	FALSE	canonical	3	392	junction_2	13	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACAAAAAAAAAAAAACA	6933	False	NA	NA	False	NA	NA	NA	65548886	65553526	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_65549733_65551283_65551378_65552707
transcript_71095.known	chr5	-	4560	5	FSM	ENSMUSG00000037822.13	ENSMUST00000139122.8	4560	5	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_4	15.1410039297267	1416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCGTTTTCTGTTTGACTT	NA	False	NA	-3	True	AATAAA	-19	NA	65650743	65604186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_65607781_65610528_65610672_65617866_65617916_65625735_65625845_65650078
transcript_71096.known	chr5	-	1056	5	FSM	ENSMUSG00000037822.13	ENSMUST00000121661.8	1056	5	0	0	0	0	multi-exon	FALSE	canonical	2	20	junction_4	163.329421721869	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTGGTTTAGAATCCATT	NA	False	NA	NA	False	AATAAA	-19	NA	65650403	65607145	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_65607781_65610528_65610672_65617866_65617916_65625735_65625845_65650283
transcript_7110.known	chr10	-	1382	4	FSM	ENSMUSG00000063804.9	ENSMUST00000215708.2	1382	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	27.6526068692749	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	AAGAAA	-19	NA	45362491	45294458	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_45295305_45296619_45296805_45345132_45345315_45362322
transcript_71104.known	chr5	+	920	1	FSM	ENSMUSG00000107195.2	ENSMUST00000200768.2	920	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAACAAAAAAAGAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	65650438	65651358	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_65650400_65651400
transcript_71105.known	chr5	-	2550	12	FSM	ENSMUSG00000029201.15	ENSMUST00000031103.14	2550	12	0	0	0	0	multi-exon	FALSE	canonical	3	385	junction_10	43.2746370854342	631	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCTTCAATTTACGTATG	NA	False	NA	-13	True	AATAAA	-22	NA	65593292	65570563	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_65571407_65574167_65574279_65574363_65574456_65574853_65574988_65575820_65575952_65577591_65577687_65579977_65580126_65580503_65580702_65580792_65580994_65581384_65581487_65584758_65584928_65592966
transcript_71106.known	chr5	-	1177	6	FSM	ENSMUSG00000037822.13	ENSMUST00000040532.12	1177	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	192.834229326642	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTTGGTTTAGAATCCAT	NA	False	NA	NA	False	AATAAA	-18	NA	65650214	65607146	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_65607781_65608054_65608161_65610528_65610672_65617866_65617916_65625735_65625845_65650078
transcript_71107.known	chr5	+	1529	7	FSM	ENSMUSG00000029203.17	ENSMUST00000201292.4	1529	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	633.60961079271	592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGACATTAATTTTTAAAA	NA	False	NA	26	True	AATAAA	-27	NA	65694618	65753098	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_65694802_65723331_65723426_65728874_65728934_65738728_65738812_65749218_65749319_65751762_65751892_65752217
transcript_71112.known	chr5	+	4682	6	FSM	ENSMUSG00000029203.17	ENSMUST00000202679.4	4682	6	0	0	0	0	multi-exon	FALSE	canonical	3	526	junction_1	338.408628731597	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGAATTTTCCCCATTAT	NA	False	NA	7	True	AATAAA	-15	NA	65694633	65756272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_65694890_65728874_65728934_65738728_65738812_65749218_65749319_65751762_65751892_65752217
transcript_71115.known	chr5	+	4506	5	FSM	ENSMUSG00000029203.17	ENSMUST00000202082.4	4506	5	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_1	597.682346652467	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGAATTTTCCCCATTAT	NA	False	NA	7	True	AATAAA	-15	NA	65694662	65756272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_65694802_65738728_65738812_65749218_65749319_65751762_65751892_65752217
transcript_71116.known	chr5	+	1449	5	FSM	ENSMUSG00000029203.17	ENSMUST00000201984.4	1449	5	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	582.178398345387	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGACATTAATTTTTAAAA	NA	False	NA	26	True	AATAAA	-27	NA	65694633	65753098	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_65694890_65738728_65738812_65749218_65749319_65751762_65751892_65752217
transcript_71121.known	chr5	+	4893	7	FSM	ENSMUSG00000029203.17	ENSMUST00000142407.8	4893	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	503.727025944277	5579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATGTTTTATATCTCATT	NA	False	NA	12	True	AATAAA	-20	NA	65694575	65756331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_65694890_65723331_65723426_65728874_65728934_65738728_65738812_65749218_65749319_65751762_65751892_65752217
transcript_71122.known	chr5	+	890	6	FSM	ENSMUSG00000029203.17	ENSMUST00000202601.4	890	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	546.724427842766	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGAAATACTTTTAATTTT	NA	False	NA	20	True	AATAAA	-31	NA	65694676	65752488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_65694890_65723331_65723426_65738728_65738812_65749218_65749319_65751762_65751892_65752217
transcript_71128.known	chr5	+	9055	20	FSM	ENSMUSG00000037795.15	ENSMUST00000201489.4	9055	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	36.4046205706359	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGTGTGAAGAAATCCTT	NA	False	NA	18	True	AATAAA	-16	NA	65920863	65987451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_65920934_65928729_65928785_65932927_65933007_65943448_65943705_65945395_65945485_65947360_65948514_65950671_65950797_65951863_65951953_65955433_65955511_65960763_65960911_65963532_65965887_65966497_65966584_65967106_65967153_65969305_65969494_65972094_65972214_65974504_65974641_65977612_65977802_65979150_65979320_65982614_65982739_65983947
transcript_7113.known	chr10	+	385	5	FSM	ENSMUSG00000038822.16	ENSMUST00000131568.2	385	5	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_3	9.12414379544733	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGACTGTGCTGCAGATG	2090	False	NA	NA	False	ATTAAA	-19	NA	45454236	45481729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_45454247_45464475_45464531_45465576_45465667_45466363_45466469_45481604
transcript_71131.known	chr5	+	1843	5	FSM	ENSMUSG00000029205.13	ENSMUST00000031108.9	1843	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.08972473588517	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTGTTTGAGTTCAATTG	NA	False	NA	NA	False	AATAAA	-19	NA	66124466	66134669	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_66124855_66125124_66125271_66126457_66126613_66128158_66128692_66134048
transcript_71132.nnic	chr5	+	895	2	NNC	ENSMUSG00000029205.13	novel	550	2	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTGTTTGAGTTCAATTG	NA	False	NA	NA	False	AATAAA	-19	NA	66133199	66134669	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_66133474_66134048
transcript_71133.known	chr5	+	550	2	FSM	ENSMUSG00000029205.13	ENSMUST00000201664.2	550	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGCGAGTGGAAGAAGGTC	NA	False	NA	NA	False	AATACA	-43	NA	66133238	66134483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_66133354_66134048
transcript_71136.known	chr5	-	6526	17	FSM	ENSMUSG00000029207.17	ENSMUST00000160870.8	6526	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	31.1528489868904	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCTTAGTAATGGGAGGT	NA	False	NA	-2	True	ATTAAA	-13	NA	66776024	66456070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_66460053_66464877_66465058_66466420_66466537_66468342_66468427_66469501_66469590_66470657_66470773_66520060_66520189_66522316_66522464_66548969_66549031_66549114_66549201_66549615_66549679_66557418_66557625_66608810_66609627_66619440_66619510_66649400_66649516_66700804_66700961_66775910
transcript_71138.known	chr5	-	1638	7	FSM	ENSMUSG00000029207.17	ENSMUST00000160775.8	1638	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	37.7377647574534	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTTTCTTTTCAGATGGT	NA	False	NA	NA	False	ATTAAA	-24	NA	66495025	66459214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_66460053_66464877_66465058_66466420_66466537_66468342_66468427_66469501_66469590_66470657_66470773_66494808
transcript_7114.known	chr10	+	464	5	FSM	ENSMUSG00000038822.16	ENSMUST00000136905.8	464	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	65.7015030269476	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGATCACTTTTCTTTG	2229	False	NA	NA	False	AATGAA	-16	NA	45454375	45481683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_45454511_45464475_45464531_45465576_45465667_45466363_45466469_45481604
transcript_71142.nnic	chr5	-	668	4	Intergenic	novelGene_97	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	48	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGTGATTGATCTCTTT	NA	False	NA	NA	False	NA	NA	NA	66502884	66499841	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr5_-_66499939_66500078_66500212_66500896_66500982_66502531
transcript_71144.known	chr5	-	629	4	FSM	ENSMUSG00000029207.17	ENSMUST00000161936.2	629	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_3	18.624953392932	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACCACATGTGTGTTGTTA	NA	False	NA	NA	False	ATTAAA	-13	NA	66776015	66619256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_66619510_66649400_66649516_66700804_66700961_66775910
transcript_71145.nnic	chr5	-	583	3	Intergenic	novelGene_98	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGTGATTGATCTCTTT	NA	False	NA	NA	False	NA	NA	NA	66502884	66499841	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr5_-_66499939_66500078_66500212_66502531
transcript_71146.nnic	chr5	-	1069	3	Intergenic	novelGene_99	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGTGATTGATCTCTTT	NA	False	NA	NA	False	NA	NA	NA	66502884	66499841	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr5_-_66500212_66500635_66500982_66502531
transcript_71147.nnic	chr5	-	808	3	Intergenic	novelGene_100	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGTGATTGATCTCTTT	NA	False	NA	NA	False	NA	NA	NA	66502884	66499841	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr5_-_66500212_66500896_66500982_66502531
transcript_71148.nnic	chr5	-	648	3	Intergenic	novelGene_101	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTTCTCCTGCTTCCTCT	NA	False	NA	NA	False	NA	NA	NA	66502884	66499895	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr5_-_66500106_66500896_66500982_66502531
transcript_7115.nnic	chr10	+	650	2	Genic_Genomic	ENSMUSG00000110841.2	novel	555	1	NA	NA	-2	-5	multi-exon	FALSE	canonical	0	0	junction_1	0	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAGAAAGATACACA	NA	False	NA	NA	False	AATAAA	-29	NA	45751384	45752177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr10_+_45751529_45751671
transcript_71150.nnic	chr5	-	622	3	NNC	ENSMUSG00000029207.17	novel	629	4	NA	NA	23571	-29899	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_2	36	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGTTATCTAAATTAGTAC	NA	False	NA	NA	False	AGTAAA	-12	NA	66752412	66649155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_66649516_66700804_66700961_66752306
transcript_71151.nic	chr5	-	646	3	ISM	ENSMUSG00000029207.17	ENSMUST00000161936.2	629	4	-25	29899	-9	-29899	5prime_fragment	FALSE	canonical	3	66	junction_2	22.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGTTATCTAAATTAGTAC	NA	False	NA	NA	False	AGTAAA	-12	NA	66776040	66649155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_66649516_66700804_66700961_66775910
transcript_71156.known	chr5	+	1177	9	FSM	ENSMUSG00000029223.13	ENSMUST00000031131.11	1177	9	0	0	0	0	multi-exon	FALSE	canonical	3	449	junction_4	35.1227757302865	7127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTTTTTATTTTCTCTT	NA	False	NA	33	True	AATAAA	-22	NA	66833433	66844577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_66833666_66833778_66833791_66834286_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184
transcript_7116.known	chr10	+	782	1	FSM	ENSMUSG00000110841.2	ENSMUST00000217344.2	782	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11534	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAGATACACAAAATG	NA	False	NA	NA	False	AATAAA	-34	NA	45751400	45752182	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_45751400_45752200
transcript_7117.nic	chr10	+	1761	4	ISM	ENSMUSG00000038774.10	ENSMUST00000035606.10	7760	42	-5	232530	-5	19	5prime_fragment	FALSE	canonical	3	92	junction_3	4.71404520791032	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTTTTGATCAATTTCC	NA	False	NA	NA	False	AAAAAG	-1	NA	50468759	50495051	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_50468994_50480846_50480979_50484015_50484167_50493807
transcript_71170.known	chr5	+	980	7	FSM	ENSMUSG00000029223.13	ENSMUST00000176015.5	980	7	0	0	0	0	multi-exon	FALSE	canonical	3	449	junction_2	35.4479273802511	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGCTGGTTTTTATTTT	NA	False	NA	28	True	AATAAA	-17	NA	66834234	66844572	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184
transcript_71174.known	chr5	+	664	4	FSM	ENSMUSG00000037720.17	ENSMUST00000162543.8	664	4	0	0	0	0	multi-exon	FALSE	canonical	3	347	junction_1	54.4691553898983	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCATCTCTCAATGTTCTT	NA	False	NA	NA	False	TATAAA	-29	NA	67417993	67421955	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_67418150_67418306_67418377_67421072_67421168_67421612
transcript_71175.known	chr5	+	495	5	FSM	ENSMUSG00000037720.17	ENSMUST00000161233.8	495	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	177.991572834222	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACCAACAAAATATTCTGAAA	NA	False	NA	NA	False	GATAAA	-11	NA	67418038	67425911	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_67418150_67418306_67418377_67421612_67421801_67424644_67424713_67425853
transcript_71177.known	chr5	+	292	1	FSM	ENSMUSG00000106925.2	ENSMUST00000202231.2	292	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGATTTCAATCAGTCATAA	2224	False	NA	NA	False	NA	NA	NA	67610821	67611113	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_67610800_67611100
transcript_7118.known	chr10	+	7760	42	FSM	ENSMUSG00000038774.10	ENSMUST00000035606.10	7760	42	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_25	18.281297269701	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGTCCTGTCTTAGACG	NA	False	NA	NA	False	TATAAA	-21	NA	50468764	50727581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_50468994_50480846_50480979_50484015_50484167_50493807_50494368_50514003_50514125_50518618_50518827_50521038_50521181_50521758_50521885_50525204_50525406_50525888_50526030_50526642_50526808_50535013_50535191_50536750_50536823_50566210_50566346_50576035_50576228_50576527_50576753_50583758_50583879_50586975_50587141_50589271_50589359_50590361_50590539_50592580_50592807_50594387_50594543_50596707_50596807_50597868_50598038_50604185_50604407_50606007_50606094_50607708_50607876_50608517_50608664_50608782_50608904_50611305_50611449_50624901_50625040_50625130_50625252_50626548_50626682_50630092_50630219_50643186_50643299_50643468_50643604_50699731_50699957_50716393_50716546_50718238_50718387_50721626_50721837_50725566_50725743_50726556
transcript_71181.known	chr5	+	2764	5	FSM	ENSMUSG00000107385.4	ENSMUST00000201973.4	2764	5	0	0	0	0	multi-exon	TRUE	canonical	3	7	junction_2	4.76969600708473	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGACTTTTTCTTATTAT	8026	False	NA	NA	False	NA	NA	NA	67621239	67628174	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_67621362_67623669_67623772_67624135_67624364_67625218_67625348_67625991
transcript_71189.known	chr5	-	326	1	FSM	ENSMUSG00000107291.2	ENSMUST00000201115.2	326	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAACAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	69714225	69713899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_69713900_69714200
transcript_7119.known	chr10	-	646	4	FSM	ENSMUSG00000019909.5	ENSMUST00000020064.5	646	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGCTATAGTTTTGTCT	NA	False	NA	NA	False	AATAAA	-13	NA	51466613	51461511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_51461687_51463290_51463400_51466156_51466266_51466360
transcript_71190.known	chr5	+	3433	17	FSM	ENSMUSG00000029208.17	ENSMUST00000087228.11	3433	17	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_8	27.9058125665604	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGATACTGGATTTTAT	NA	False	NA	NA	False	AATACA	-16	NA	69714303	69730447	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_69714509_69715527_69715640_69715784_69715934_69716189_69716271_69716892_69716971_69717774_69717859_69718477_69718543_69718996_69719201_69720425_69720566_69721866_69721991_69722772_69722906_69723703_69723848_69724470_69724605_69725738_69725841_69726571_69726692_69728103_69728141_69728926
transcript_71192.known	chr5	+	1752	11	FSM	ENSMUSG00000029208.17	ENSMUST00000132169.8	1752	11	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_8	34.8122105014893	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAAGT	NA	False	NA	NA	False	NA	NA	NA	69714295	69724212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_69714509_69715527_69715640_69715784_69715934_69716189_69716271_69716892_69716971_69717774_69717859_69718477_69718543_69718996_69719201_69721866_69721991_69722772_69722906_69723703
transcript_71193.known	chr5	+	6321	4	FSM	ENSMUSG00000029208.17	ENSMUST00000125660.3	6321	4	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_2	10.6144555520604	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATTCTAGTTGTAATTTT	NA	False	NA	NA	False	ATTAAA	-22	NA	69724066	69733316	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_69725841_69726571_69726692_69728103_69728141_69728926
transcript_71194.known	chr5	-	1011	7	FSM	ENSMUSG00000029209.16	ENSMUST00000173927.8	1011	7	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_3	36.2142544065486	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACAAAAACAAAAAAAA	NA	False	NA	NA	False	GATAAA	-37	NA	69749617	69733154	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_69733297_69735320_69735496_69736850_69737030_69742316_69742500_69743807_69743910_69747003_69747167_69749550
transcript_71195.known	chr5	-	1594	7	FSM	ENSMUSG00000029209.16	ENSMUST00000120789.8	1594	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	42.414620120897	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTCTAAGTTTCCACACC	NA	False	NA	NA	False	ATTAAA	-15	NA	69749636	69734084	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_69734785_69735320_69735496_69736850_69737036_69742316_69742500_69743807_69743910_69747003_69747167_69749550
transcript_71197.known	chr5	-	542	3	FSM	ENSMUSG00000049387.11	ENSMUST00000050129.6	542	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_2	6	309	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAATAAGTTGTTGAAAAC	NA	False	NA	NA	False	AATAAA	-15	NA	71705548	71600166	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_71600613_71660793_71660857_71705515
transcript_7120.known	chr10	+	3024	11	FSM	ENSMUSG00000019891.16	ENSMUST00000069004.14	3024	11	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_2	11.5134703716994	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCCCTGACTTCTATTTG	NA	False	NA	6	True	AATAAA	-16	NA	52109714	52197472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_52109932_52137822_52138036_52160198_52160334_52162443_52162496_52166946_52167020_52180682_52180817_52187495_52187537_52188909_52188998_52190450_52190501_52193127_52193248_52195571
transcript_71203.known	chr5	-	3895	5	FSM	ENSMUSG00000029213.12	ENSMUST00000013693.11	3895	5	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_3	25.4889682019496	1209	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATAGACTCATGGGTATT	NA	False	NA	-4	True	NA	NA	NA	72325532	72313917	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_72317237_72318250_72318407_72320064_72320218_72322693_72322850_72325421
transcript_71205.known	chr5	+	761	3	FSM	ENSMUSG00000046808.18	ENSMUST00000169617.3	761	3	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGATGGGGTGTTCCCGAG	NA	False	NA	NA	False	NA	NA	NA	72360671	72387818	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_72360907_72384974_72385302_72387619
transcript_71206.known	chr5	-	798	5	FSM	ENSMUSG00000072889.10	ENSMUST00000146761.2	798	5	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_4	15.8587515271537	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGAAGTTGTATTGTTGGA	NA	False	NA	NA	False	AATAAA	-25	NA	72716991	72707566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_72707766_72709985_72710096_72713514_72713689_72716356_72716612_72716931
transcript_71207.known	chr5	+	4206	6	FSM	ENSMUSG00000067219.10	ENSMUST00000087212.8	4206	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTCTATTCTGTTTTGA	2039	False	NA	NA	False	NA	NA	NA	72805137	72828421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_72805277_72816024_72816292_72818098_72818156_72820876_72820968_72824118_72824280_72824930
transcript_71208.known	chr5	-	2659	19	FSM	ENSMUSG00000029217.17	ENSMUST00000071944.13	2659	19	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	3.16471674858358	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTTTGTTGTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	73025787	72913058	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_72913723_72914705_72914864_72914946_72915066_72917685_72917751_72920906_72921124_72921466_72921639_72922854_72922930_72926047_72926182_72928489_72928570_72931173_72931229_72936763_72936830_72939345_72939519_72941060_72941102_72943259_72943389_72944080_72944163_72946482_72946588_72980798_72980985_72982386_72982474_73025736
transcript_71218.nic	chr5	+	1530	10	NIC	ENSMUSG00000029152.14	novel	1523	9	NA	NA	-82	0	combination_of_known_junctions	FALSE	canonical	3	159	junction_1	326.119874953224	889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTGTCATTCACATTTT	NA	False	NA	15	True	AATAAA	-16	NA	73450044	73471284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_73450320_73451308_73451354_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
transcript_71229.known	chr5	+	800	8	FSM	ENSMUSG00000029152.14	ENSMUST00000202250.4	800	8	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	366.22843323003	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTTTATGGTCCAACGT	NA	False	NA	NA	False	AATGAA	-5	NA	73450149	73464123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_73450320_73451308_73451354_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920
transcript_71239.known	chr5	+	1523	9	FSM	ENSMUSG00000029152.14	ENSMUST00000031038.11	1523	9	0	0	0	0	multi-exon	FALSE	canonical	3	746	junction_1	106.002063659157	2624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTGTCTTTTTTTTAAAG	NA	False	NA	14	True	AATACA	-7	NA	73450134	73471412	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
transcript_7124.known	chr10	+	2795	10	FSM	ENSMUSG00000019891.16	ENSMUST00000218582.2	2795	10	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	48.9166587797331	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCTGACTTCTATTTGGC	NA	False	NA	8	True	AATAAA	-18	NA	52109732	52197474	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_52109932_52160198_52160334_52162443_52162496_52166946_52167020_52180682_52180817_52187495_52187537_52188909_52188998_52190450_52190501_52193127_52193248_52195571
transcript_71240.known	chr5	+	1311	8	FSM	ENSMUSG00000029152.14	ENSMUST00000071081.13	1311	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	338.614704889417	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATGGCTTTGTTTGAA	NA	False	NA	31	True	AATAAA	-32	NA	73450126	73471300	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464142_73470785
transcript_71241.known	chr5	+	3354	7	FSM	ENSMUSG00000029152.14	ENSMUST00000166823.5	3354	7	0	0	0	0	multi-exon	FALSE	canonical	3	746	junction_1	115.10683443364	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCGTTGCTTGAAAGATT	NA	False	NA	16	True	AATAAA	-27	NA	73450135	73466708	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920
transcript_71242.known	chr5	+	1139	8	FSM	ENSMUSG00000029152.14	ENSMUST00000200935.4	1139	8	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_7	334.9632937551	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTGTCATTCACATTTT	NA	False	NA	15	True	AATAAA	-16	NA	73450237	73471284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73470785
transcript_71243.known	chr5	+	999	7	FSM	ENSMUSG00000029152.14	ENSMUST00000201556.4	999	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	363.453535162643	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTGATGAATAAAATGTAAAA	NA	False	NA	-12	True	ATTAAA	-39	NA	73450174	73471257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73470785
transcript_71246.known	chr5	-	2554	7	FSM	ENSMUSG00000029153.12	ENSMUST00000087195.9	2554	7	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_6	41.8107508768844	728	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACGCTGGCTTTTTCTTCTT	NA	False	NA	-1	True	AATAAA	-35	NA	73496335	73479541	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_73481191_73483623_73483742_73485005_73485054_73486609_73486664_73489446_73489544_73493162_73493289_73495873
transcript_71252.known	chr5	-	876	6	FSM	ENSMUSG00000029153.12	ENSMUST00000202012.2	876	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	63.373811625939	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAAATTCAGGAAAGGTTG	NA	False	NA	NA	False	NA	NA	NA	73495901	73480688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_73481191_73483623_73483742_73485005_73485054_73486609_73486664_73493162_73493289_73495873
transcript_71255.nic	chr5	-	812	3	ISM	ENSMUSG00000029153.12	ENSMUST00000087195.9	2554	7	-35	9813	-35	-4347	5prime_fragment	FALSE	canonical	3	44	junction_2	59.5	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAATAATCGATTTACTAAT	NA	False	NA	NA	False	AATAAA	-38	NA	73496370	73489354	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_73489544_73493162_73493289_73495873
transcript_71262.known	chr5	+	4116	11	FSM	ENSMUSG00000051674.16	ENSMUST00000063882.12	4116	11	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	17.7721692542019	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATTTGTGGGGTCTTTGT	NA	False	NA	15	True	AATAAA	-26	NA	73648375	73718133	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_73648535_73668228_73668300_73668469_73668510_73677458_73677574_73679995_73680088_73688846_73688918_73691948_73692041_73701389_73701499_73712701_73712807_73714596_73714700_73714974
transcript_71267.known	chr5	+	4023	10	FSM	ENSMUSG00000051674.16	ENSMUST00000113558.8	4023	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_8	47.4083911934961	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGGGGTCTTTGTACTC	NA	False	NA	19	True	AATAAA	-30	NA	73648367	73718137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_73648535_73668228_73668300_73668469_73668510_73677458_73677574_73679995_73680088_73688846_73688918_73691948_73692041_73701389_73701499_73714596_73714700_73714974
transcript_7127.nic	chr10	+	972	8	ISM	ENSMUSG00000019891.16	ENSMUST00000069004.14	3024	11	-18	8474	-18	-8474	5prime_fragment	FALSE	canonical	3	170	junction_2	12.1117247967009	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTGAATTTAAACTTTTT	NA	False	NA	NA	False	NA	NA	NA	52109696	52188998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_52109932_52137822_52138036_52160198_52160334_52162443_52162496_52166946_52167020_52180682_52180817_52187495_52187537_52188909
transcript_71271.nnic	chr5	-	3116	8	NNC	ENSMUSG00000029156.12	novel	3786	6	NA	NA	-18609	-852	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	30.3052497641136	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCTATATTACAAAGTATTA	NA	False	NA	NA	False	AATAAA	-23	NA	73823742	73790943	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_73793042_73796725_73796858_73797131_73797324_73798025_73798212_73801614_73801825_73817744_73817831_73823363_73823482_73823648
transcript_71273.nnic	chr5	-	1481	8	NNC	ENSMUSG00000029156.12	novel	3786	6	NA	NA	-18609	-2487	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	30.3052497641136	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTGTTTTTAACATTCTA	NA	False	NA	NA	False	AATAAA	-16	NA	73823742	73792578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_73793042_73796725_73796858_73797131_73797324_73798025_73798212_73801614_73801825_73817744_73817831_73823363_73823482_73823648
transcript_71275.known	chr5	-	3786	6	FSM	ENSMUSG00000029156.12	ENSMUST00000081170.9	3786	6	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_5	18.2756668824971	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCAGTTTCTTCGTGACTT	NA	False	NA	NA	False	AATAAA	-17	NA	73805133	73790091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_73793042_73796725_73796858_73797131_73797324_73798025_73798212_73801614_73801825_73805017
transcript_71276.nnic	chr5	+	789	3	Intergenic	novelGene_102	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTCCGCCTCCCTTTTCCC	NA	False	NA	NA	False	NA	NA	NA	73817253	73823742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr5_+_73817831_73823363_73823482_73823648
transcript_71277.nnic	chr5	+	1761	3	NNC	ENSMUSG00000106968.2	novel	848	2	NA	NA	-58	796	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	1	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATATTATATATGTTTAT	NA	False	NA	NA	False	NA	NA	NA	74103665	74106515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_74103968_74104279_74104339_74105115
transcript_71278.known	chr5	+	848	2	FSM	ENSMUSG00000106968.2	ENSMUST00000202711.2	848	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAGAGTCCCCC	NA	False	NA	NA	False	AATAAA	-4	NA	74103723	74105719	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_74103968_74105115
transcript_71282.nic	chr5	-	3174	9	NIC	ENSMUSG00000054814.15	novel	4557	9	NA	NA	-9	-1312	combination_of_known_junctions	FALSE	canonical	3	126	junction_8	53.0377224247045	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTGCAGCTAATTTATTA	NA	False	NA	-1	True	ATTAAA	-17	NA	74226418	74160698	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_74162799_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74190032_74192964_74193179_74197693_74197775_74226307
transcript_71283.known	chr5	-	4557	9	FSM	ENSMUSG00000054814.15	ENSMUST00000068058.14	4557	9	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_8	42.7755771439732	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTTTGGCTCCTATTT	NA	False	NA	NA	False	ATTAAA	-26	NA	74229092	74159386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_74162799_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74190032_74192964_74193179_74197693_74197775_74228910
transcript_71284.nic	chr5	-	2504	9	NIC	ENSMUSG00000054814.15	novel	4557	9	NA	NA	-9	1091	combination_of_known_junctions	FALSE	canonical	3	126	junction_8	53.0377224247045	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTCTTGGTTTTCCTACA	NA	False	NA	-19	True	ATTAAA	-29	NA	74226418	74161368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_74162799_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74190032_74192964_74193179_74197693_74197775_74226307
transcript_71287.known	chr5	-	452	4	FSM	ENSMUSG00000054814.15	ENSMUST00000145016.3	452	4	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_3	64.8194072447099	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACACTATTGCGGACATCC	NA	False	NA	NA	False	NA	NA	NA	74226409	74189976	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_74190032_74192964_74193179_74197693_74197775_74226307
transcript_71290.known	chr5	+	575	3	FSM	ENSMUSG00000106943.3	ENSMUST00000120364.2	575	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	23.5	1590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTGTTCACTTGTTCTT	NA	False	NA	19	True	AATAAA	-21	NA	74253737	74254998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_74253801_74254018_74254081_74254548
transcript_71291.known	chr5	+	1036	2	FSM	ENSMUSG00000106943.3	ENSMUST00000117249.2	1036	2	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	0	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTTGTTCACTTGTTCT	NA	False	NA	18	True	AATAAA	-20	NA	74253743	74254997	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_74253801_74254018
transcript_71293.known	chr5	+	121	1	FSM	ENSMUSG00000093355.3	ENSMUST00000175614.3	121	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	104	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACCAAAAGCTTCATTTAA	NA	False	NA	NA	False	NA	NA	NA	74254190	74254311	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_74254200_74254300
transcript_71294.known	chr5	+	1812	4	FSM	ENSMUSG00000049907.9	ENSMUST00000051937.9	1812	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	1.4142135623731	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGACTGGGTCTTTATT	NA	False	NA	21	True	AATAAA	-23	NA	74355946	74360142	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_74356252_74356763_74356821_74357927_74358005_74358769
transcript_71295.known	chr5	+	334	2	FSM	ENSMUSG00000049907.9	ENSMUST00000183995.2	334	2	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCCTCCCCCTTCCCCCTC	NA	False	NA	NA	False	NA	NA	NA	74356105	74356951	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_74356252_74356763
transcript_71296.nnic	chr5	-	1464	9	NNC	ENSMUSG00000062110.15	novel	3672	9	NA	NA	8955	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_8	20.0058585169445	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCAAGCTGTCGCTAGC	NA	False	NA	-3	True	AATAAA	-25	NA	74683435	74366749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_74367057_74372911_74373032_74385975_74386111_74397099_74397246_74558314_74558565_74623220_74623397_74642810_74642939_74680144_74680314_74683402
transcript_71297.known	chr5	-	3672	9	FSM	ENSMUSG00000062110.15	ENSMUST00000072857.13	3672	9	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	6.19979838381862	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGCCATGTGACTCAGAAC	NA	False	NA	NA	False	AATAAA	-15	NA	74692410	74365476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_74367057_74372911_74373032_74385975_74386111_74397099_74397246_74558314_74558565_74623220_74623397_74642810_74642939_74680144_74680314_74691442
transcript_7130.nic	chr10	+	1198	6	ISM	ENSMUSG00000019891.16	ENSMUST00000069004.14	3024	11	-18	16300	-18	-16300	5prime_fragment	TRUE	canonical	3	170	junction_2	13.4669966956259	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGAGTTTCAACGGCATTT	NA	False	NA	NA	False	TTTAAA	-4	NA	52109696	52181172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_52109932_52137822_52138036_52160198_52160334_52162443_52162496_52166946_52167020_52180682
transcript_71305.known	chr5	+	4769	18	FSM	ENSMUSG00000029227.16	ENSMUST00000113536.8	4769	18	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_9	161.909389842069	649	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTCATTACCCTGACTGC	NA	False	NA	23	True	AATAAA	-32	NA	74696131	74759461	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74725179_74725288_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
transcript_7131.nnic	chr10	+	960	6	NNC	ENSMUSG00000019891.16	novel	3024	11	NA	NA	-18	2776	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	74.6635118381127	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTATTCTGTTGTATTGT	NA	False	NA	NA	False	NA	NA	NA	52109696	52167417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_52109932_52137822_52138036_52160198_52160334_52162443_52162496_52166946_52167199_52167344
transcript_71311.known	chr5	+	4673	17	FSM	ENSMUSG00000029227.16	ENSMUST00000080164.12	4673	17	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_9	134.520909155417	654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATGAAGTTTGGTCATTA	NA	False	NA	13	True	AATAAA	-22	NA	74696109	74759451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
transcript_71314.known	chr5	+	1969	16	FSM	ENSMUSG00000029227.16	ENSMUST00000113535.9	1969	16	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_11	150.805393360671	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAAAAGCTTTGTCTTGT	NA	False	NA	22	True	AATAAA	-23	NA	74696141	74756806	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74731759_74731854_74733089_74733247_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
transcript_71322.nnic	chr5	-	732	3	Antisense	novelGene_ENSMUSG00000035946.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	1	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCAACCCCGACCCCCCCC	NA	False	NA	NA	False	NA	NA	NA	75236870	75232125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr5_-_75232311_75235914_75236041_75236449
transcript_71324.known	chr5	+	1665	2	FSM	ENSMUSG00000035946.8	ENSMUST00000040477.4	1665	2	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTACTTGTCCTTATCCCCC	NA	False	NA	NA	False	AATAAA	-30	NA	75236261	75238554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_75236999_75237626
transcript_71328.known	chr5	+	5214	21	FSM	ENSMUSG00000005672.13	ENSMUST00000005815.7	5214	21	0	0	0	0	multi-exon	FALSE	canonical	3	392	junction_9	204.916348786523	153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATTTTTCTGTTTGTTTT	766	False	NA	14	True	NA	NA	NA	75735614	75817382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_75735779_75767685_75767959_75769929_75770212_75771466_75771604_75775978_75776154_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799819_75801152_75801260_75801358_75801486_75801769_75801875_75801986_75802098_75806495_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813517_75813879_75813986_75815073
transcript_71335.known	chr5	+	1747	6	FSM	ENSMUSG00000029233.16	ENSMUST00000031143.13	1747	6	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_4	4.14728827066554	286	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCCTGGACTGGGTAACAT	NA	False	NA	15	True	AATAAA	-27	NA	76288117	76303326	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_76288396_76295532_76295676_76297049_76297086_76297599_76297798_76301370_76301506_76302369
transcript_71345.nnic	chr5	-	752	4	NNC	ENSMUSG00000029238.12	novel	2287	3	NA	NA	-5	2864	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	14.2361043360417	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTCTGTATACTTGGAAT	NA	False	NA	NA	False	AATAAA	-20	NA	76452624	76416936	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_76417402_76421805_76421891_76451270_76451350_76452501
transcript_71346.nic	chr5	-	1261	3	ISM	ENSMUSG00000029238.12	ENSMUST00000075159.5	7478	23	51	60815	51	-1038	5prime_fragment	FALSE	canonical	3	18	junction_2	16.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAGGAAGGAAGGAAGAAT	NA	False	NA	NA	False	NA	NA	NA	76452344	76420838	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_76421891_76451270_76451350_76452214
transcript_71347.known	chr5	-	2287	3	FSM	ENSMUSG00000029238.12	ENSMUST00000201052.2	2287	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	14	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAAAAGAAATAAGCT	NA	False	NA	NA	False	AGTAAA	-27	NA	76452619	76419800	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_76421891_76451270_76451350_76452501
transcript_7135.known	chr10	-	4317	8	FSM	ENSMUSG00000019861.16	ENSMUST00000105475.9	4317	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	47.4384671260076	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCTGTGACTTGTATCAT	NA	False	NA	1	True	ATTAAA	-29	NA	52258220	52213119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_52215950_52222144_52222326_52225167_52225333_52226696_52226793_52229422_52229589_52230667_52230844_52234844_52235034_52257706
transcript_71352.known	chr5	-	1181	6	FSM	ENSMUSG00000029235.15	ENSMUST00000031145.7	1181	6	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	18.0554700852678	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGTGTGCACCATGTGT	NA	False	NA	NA	False	AATAAA	-31	NA	76479003	76459973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_76460446_76465647_76465857_76466973_76467118_76472152_76472244_76472839_76472961_76478859
transcript_71358.known	chr5	-	1049	5	FSM	ENSMUSG00000029235.15	ENSMUST00000122213.8	1049	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	26.9014404818775	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGTGTGTATAGGTGTGC	NA	False	NA	NA	False	AATAAA	-43	NA	76478980	76459961	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_76460446_76465647_76465857_76466973_76467118_76472152_76472244_76478859
transcript_7136.nnic	chr10	+	621	5	NNC	ENSMUSG00000023068.17	novel	4605	5	NA	NA	-9	3394	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	165.410663199202	24	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCATATTCCTCATAATTT	NA	False	NA	9	True	TATAAA	-17	NA	52293633	52312862	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_52293689_52305288_52305415_52306162_52306313_52309440_52309541_52312672
transcript_71360.nnic	chr5	-	970	5	NIC	ENSMUSG00000029235.15	novel	1181	6	NA	NA	-9	-11	combination_of_known_splicesites	FALSE	canonical	3	6	junction_1	37.1483512420134	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGACATTTTGTATGTGT	NA	False	NA	NA	False	AATAAA	-20	NA	76479012	76459984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_76460446_76466973_76467118_76472152_76472244_76472839_76472961_76478859
transcript_7137.nnic	chr10	+	1934	5	NNC	ENSMUSG00000023068.17	novel	4605	5	NA	NA	-79	-2174	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	165.410663199202	86	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGGTCCAGTCACATTAC	NA	False	NA	14	True	AATAAA	-15	NA	52293563	52314105	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_52293689_52305288_52305415_52306162_52306313_52309440_52309541_52312672
transcript_71372.known	chr5	-	828	10	FSM	ENSMUSG00000029236.5	ENSMUST00000031146.3	828	10	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_2	1.03040205505508	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTACAATGGTCGATTGC	NA	False	NA	NA	False	AATAAA	-19	NA	76511635	76481341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_76481525_76483669_76483710_76485284_76485339_76488608_76488678_76491768_76491820_76491910_76491941_76493285_76493346_76497958_76498007_76506197_76506257_76511401
transcript_71375.known	chr5	+	152	1	FSM	ENSMUSG00000107160.2	ENSMUST00000201954.2	152	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTGTTAACCTAATTAAA	NA	False	NA	NA	False	NA	NA	NA	76558200	76558352	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_76558200_76558400
transcript_71376.known	chr5	+	3371	19	FSM	ENSMUSG00000036435.14	ENSMUST00000087133.11	3371	19	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_10	33.5248203611431	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATATTCTTAAGCCTTATA	NA	False	NA	17	True	AATAAA	-27	NA	76677157	76718141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_76677310_76680601_76680736_76683400_76683532_76685544_76685705_76689897_76690086_76691301_76691530_76691724_76691858_76693100_76693211_76697298_76697449_76701946_76702053_76705665_76705711_76706850_76707015_76707564_76707673_76708176_76708254_76709138_76709368_76711076_76711261_76714803_76715004_76715813_76716009_76717464
transcript_71378.known	chr5	+	3272	18	FSM	ENSMUSG00000036435.14	ENSMUST00000049469.13	3272	18	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_10	35.7889816992977	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTGATAATATTCTTAAG	NA	False	NA	10	True	AATAAA	-20	NA	76677204	76718134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_76677310_76680601_76680736_76683400_76683532_76685544_76685705_76689897_76690086_76691301_76691530_76691724_76691858_76693100_76693211_76697298_76697449_76701946_76702053_76706850_76707015_76707564_76707673_76708176_76708254_76709138_76709368_76711076_76711261_76714803_76715004_76715813_76716009_76717464
transcript_7138.nnic	chr10	+	3056	5	NNC	ENSMUSG00000023068.17	novel	4605	5	NA	NA	-8	-981	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	165.410663199202	103	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGACTGTAGTAGTATGTGA	NA	False	NA	5	True	AATAAA	-18	NA	52293634	52315298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_52293689_52305288_52305415_52306162_52306313_52309440_52309541_52312672
transcript_71381.known	chr5	+	583	4	FSM	ENSMUSG00000036377.20	ENSMUST00000128112.8	583	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.05480466765633	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTCACAGGACAACATCCT	NA	False	NA	NA	False	NA	NA	NA	76805529	76988728	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_76805701_76907432_76907579_76970312_76970485_76988634
transcript_71383.known	chr5	+	319	2	FSM	ENSMUSG00000036377.20	ENSMUST00000149216.2	319	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGAGCGACTTTCACCCA	996	False	NA	NA	False	NA	NA	NA	77017034	77018521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_77017196_77018363
transcript_71386.nic	chr5	-	3831	16	NIC	ENSMUSG00000055923.17	novel	3694	16	NA	NA	4	0	combination_of_known_junctions	TRUE	canonical	3	27	junction_15	19.0349386363311	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTGTGGTCCTTTCCA	NA	False	NA	2	True	ATTAAA	-21	NA	77053346	77023781	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_77024270_77025373_77025506_77026250_77026374_77027756_77027921_77030113_77030910_77031932_77032049_77033976_77034170_77035034_77035208_77035876_77035984_77036439_77036682_77039449_77039643_77044223_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77053117
transcript_71387.known	chr5	-	3694	16	FSM	ENSMUSG00000055923.17	ENSMUST00000120963.8	3694	16	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_15	18.6828501275605	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTGTGGTCCTTTCCA	NA	False	NA	2	True	ATTAAA	-21	NA	77053361	77023781	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_77024270_77025373_77025506_77026250_77026374_77027756_77027921_77030113_77030910_77031932_77032049_77033976_77034170_77035034_77035208_77035876_77035984_77036439_77036682_77039449_77039643_77044223_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77053269
transcript_71390.nnic	chr5	-	1386	6	NIC	ENSMUSG00000055923.17	novel	2264	13	NA	NA	-25	139	combination_of_known_splicesites	FALSE	canonical	3	6	junction_5	35.981106153091	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTGTGTGTGTGTATG	NA	False	NA	NA	False	AATAAA	-18	NA	77053300	77043949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77052805_77052860_77053117
transcript_71391.nic	chr5	-	1286	6	ISM	ENSMUSG00000055923.17	ENSMUST00000146570.8	2264	13	-18	13286	-2	139	5prime_fragment	FALSE	canonical	3	18	junction_5	32.6521055982612	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTGTGTGTGTGTATG	NA	False	NA	NA	False	AATAAA	-18	NA	77053352	77043949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77052805_77052860_77053269
transcript_71393.nic	chr5	-	1147	6	ISM	ENSMUSG00000055923.17	ENSMUST00000146570.8	2264	13	-18	13425	-2	0	5prime_fragment	FALSE	canonical	3	18	junction_5	32.6521055982612	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAAATCTTATATTT	NA	False	NA	NA	False	AAAACA	-5	NA	77053352	77044088	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77052805_77052860_77053269
transcript_71395.nic	chr5	-	1378	5	NIC	ENSMUSG00000055923.17	novel	1080	5	NA	NA	4	139	combination_of_known_junctions	FALSE	canonical	3	27	junction_4	26.7301328092473	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTGTGTGTGTGTATG	NA	False	NA	NA	False	AATAAA	-18	NA	77053346	77043949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77053117
transcript_71396.known	chr5	-	1080	5	FSM	ENSMUSG00000055923.17	ENSMUST00000154548.8	1080	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	25.8891869319992	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAAATCTTATATTT	NA	False	NA	NA	False	AAAACA	-5	NA	77053339	77044088	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77053269
transcript_71398.nic	chr5	-	1239	5	NIC	ENSMUSG00000055923.17	novel	1080	5	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_4	26.7301328092473	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAAATCTTATATTT	NA	False	NA	NA	False	AAAACA	-5	NA	77053346	77044088	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77053117
transcript_7140.known	chr10	+	1855	3	FSM	ENSMUSG00000112132.2	ENSMUST00000218737.2	1855	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	4.5	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCCGGCCTCTGGCTGTGT	5694	False	NA	NA	False	NA	NA	NA	53285977	53300368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_53286053_53297604_53297685_53298668
transcript_71403.nnic	chr5	-	1190	4	NIC	ENSMUSG00000055923.17	novel	1080	5	NA	NA	4	139	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	40.4337592722825	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTGTGTGTGTGTATG	NA	False	NA	NA	False	AATAAA	-18	NA	77053330	77043949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_77044538_77049007_77049129_77049764_77050033_77053117
transcript_71404.nic	chr5	-	1074	4	ISM	ENSMUSG00000055923.17	ENSMUST00000136080.8	651	5	-27	1653	-5	139	5prime_fragment	FALSE	canonical	3	5	junction_3	38.5774833578115	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTGTGTGTGTGTATG	NA	False	NA	NA	False	AATAAA	-18	NA	77053366	77043949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_77044538_77049007_77049129_77049764_77050033_77053269
transcript_71408.known	chr5	+	2345	10	FSM	ENSMUSG00000029247.18	ENSMUST00000120912.8	2345	10	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	1026.8195172413	5046	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGCTGTGTGGTCTATA	327	False	NA	19	True	ATTAAA	-22	NA	77099194	77115356	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_77099516_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
transcript_71420.known	chr5	+	2482	9	FSM	ENSMUSG00000029247.18	ENSMUST00000031160.16	2482	9	0	0	0	0	multi-exon	FALSE	canonical	3	3017	junction_4	215.03720608304	6708	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	286	False	NA	15	True	ATTAAA	-18	NA	77099153	77115352	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
transcript_71432.known	chr5	-	2057	10	FSM	ENSMUSG00000029246.15	ENSMUST00000031158.9	2057	10	0	0	0	0	multi-exon	FALSE	canonical	3	550	junction_5	49.1347353938354	1484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTACATGGAATGCAGCAT	NA	False	NA	-15	True	ATTAAA	-20	NA	77099012	77062890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_77063253_77063791_77063913_77065880_77066103_77067217_77067755_77069316_77069390_77070057_77070204_77070301_77070415_77073520_77073728_77074637_77074705_77098803
transcript_71433.known	chr5	-	3981	11	FSM	ENSMUSG00000029246.15	ENSMUST00000140076.2	3981	11	0	0	0	0	multi-exon	FALSE	canonical	3	550	junction_6	47.121226639382	1197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTATGTGTGCATTTTAA	NA	False	NA	49	True	AATAAA	-3	NA	77099425	77061122	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_77063253_77063791_77063913_77065880_77066103_77067217_77067346_77067602_77067755_77069316_77069390_77070057_77070204_77070301_77070415_77073520_77073728_77074637_77074705_77098803
transcript_71434.known	chr5	+	1862	10	FSM	ENSMUSG00000029247.18	ENSMUST00000117536.8	1862	10	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_1	1007.72571224074	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGGGGATCTGACCCCAT	347	False	NA	9	True	NA	NA	NA	77099214	77115160	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_77099249_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
transcript_71435.known	chr5	+	3625	19	FSM	ENSMUSG00000036323.15	ENSMUST00000101087.10	3625	19	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_6	28.4995126663987	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCGGTATTGGCATTTT	NA	False	NA	28	True	AATAAA	-36	NA	77122529	77147784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_77122680_77124244_77124366_77126429_77126554_77128134_77128279_77128361_77128474_77130081_77130114_77131964_77132090_77132180_77132239_77135713_77135846_77137147_77137277_77138119_77138193_77139836_77139902_77141988_77142085_77142474_77142579_77142682_77142761_77143624_77143763_77144498_77144537_77145269_77145430_77146038
transcript_71449.known	chr5	+	2297	17	FSM	ENSMUSG00000036323.15	ENSMUST00000120550.2	2297	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	76.691651273134	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATAAATTGTCCTGTGAT	NA	False	NA	-23	True	NA	NA	NA	77122553	77146663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_77122680_77124244_77124366_77126429_77126554_77128134_77128279_77128361_77128474_77130081_77130114_77135713_77135846_77137147_77137277_77138119_77138193_77139836_77139902_77141988_77142085_77142474_77142579_77142682_77142761_77143624_77143763_77144498_77144537_77145269_77145430_77146038
transcript_7145.known	chr10	-	4132	8	FSM	ENSMUSG00000058298.11	ENSMUST00000219838.3	4132	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	13.5586405916625	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTATCCTTTCTAAAACTG	NA	False	NA	NA	False	ATTAAA	-20	NA	53506535	53484933	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_53487568_53488922_53489049_53491947_53492149_53496229_53496312_53498851_53499169_53501811_53502131_53505819_53506228_53506490
transcript_71450.known	chr5	-	1113	3	FSM	ENSMUSG00000059325.15	ENSMUST00000113453.9	1113	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	1.5	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGGAGTCTTTTTTTTT	3143	False	NA	-3	True	ATTAAA	-20	NA	77243124	77234834	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_77235664_77242712_77242870_77242997
transcript_71452.known	chr5	-	1261	3	FSM	ENSMUSG00000059325.15	ENSMUST00000081964.7	1261	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	12	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGGAGTCTTTTTTTTT	NA	False	NA	-3	True	ATTAAA	-20	NA	77262968	77234834	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_77235664_77242712_77242870_77262693
transcript_71453.known	chr5	-	1217	2	FSM	ENSMUSG00000059325.15	ENSMUST00000120827.9	1217	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGGAGTCTTTTTTTTT	3167	False	NA	-3	True	ATTAAA	-20	NA	77243100	77234834	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_77235664_77242712
transcript_71454.known	chr5	-	594	4	FSM	ENSMUSG00000053030.12	ENSMUST00000120429.8	594	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.86744175568088	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCCTCGTCTTTTCTGTTG	NA	False	NA	NA	False	AATAAA	-17	NA	77359285	77352953	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_77353273_77354775_77354882_77357579_77357642_77359178
transcript_71457.nnic	chr5	+	1904	4	NNC	ENSMUSG00000029249.16	novel	7004	4	NA	NA	-5207	-5057	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_1	390.478623685799	609	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTCTGAGTGCAAATCAA	553	False	NA	-17	True	AAAAAG	-6	NA	77408130	77429222	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_77408386_77415778_77416671_77423080_77423165_77428549
transcript_71459.known	chr5	+	7004	4	FSM	ENSMUSG00000029249.16	ENSMUST00000080359.12	7004	4	0	0	0	0	multi-exon	FALSE	canonical	3	740	junction_1	62.4731053245226	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGGACCTTTGTTTATTATT	3696	False	NA	14	True	AATAAA	-14	NA	77413337	77434279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_77413636_77415778_77416671_77423080_77423165_77428549
transcript_7146.known	chr10	-	307	3	FSM	ENSMUSG00000058298.11	ENSMUST00000219841.3	307	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	17.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTAAACTTTGTTTTTT	NA	False	NA	NA	False	AATAAA	-11	NA	53489048	53484344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_53484406_53487447_53487568_53488922
transcript_71461.known	chr5	+	6924	4	FSM	ENSMUSG00000029249.16	ENSMUST00000113449.2	6924	4	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	347.74543690592	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGGACCTTTGTTTATTATT	4401	False	NA	14	True	AATAAA	-14	NA	77414042	77434279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_77414261_77415778_77416671_77423080_77423165_77428549
transcript_71467.known	chr5	-	2288	7	FSM	ENSMUSG00000036285.11	ENSMUST00000047860.9	2288	7	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_4	16.2138486760204	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGTCCATGTATCTGTGA	NA	False	NA	69	True	AATAAA	-14	NA	77457931	77442028	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_77442404_77444932_77445051_77447504_77447622_77452032_77452165_77454120_77454324_77455399_77455565_77456753
transcript_7147.known	chr10	-	4164	18	FSM	ENSMUSG00000019856.15	ENSMUST00000020003.15	4164	18	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	2.21976026636626	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTACTTCCAAGTATAT	4470	False	NA	NA	False	AATAAA	-15	NA	53627219	53509240	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_53509812_53511327_53511531_53514272_53514378_53517040_53517159_53523078_53523226_53523667_53523853_53525197_53525326_53528395_53528550_53531062_53531276_53550661_53550813_53551231_53551354_53553826_53553989_53560331_53560455_53566046_53566245_53570790_53570973_53573219_53573356_53574584_53575440_53626808
transcript_71470.known	chr5	-	2815	3	FSM	ENSMUSG00000036285.11	ENSMUST00000150722.2	2815	3	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	77457906	77452826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_77454324_77455399_77455565_77456753
transcript_71472.known	chr5	+	4145	25	FSM	ENSMUSG00000029250.6	ENSMUST00000031167.6	4145	25	0	0	0	0	multi-exon	TRUE	canonical	3	372	junction_9	39.992360381564	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATGTGTTATCTTTGATT	NA	False	NA	16	True	AATAAA	-16	NA	77457993	77497171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_77458478_77460997_77461071_77463696_77463848_77467810_77467924_77468057_77468278_77468801_77468961_77471400_77471566_77473585_77473783_77473894_77474015_77474381_77474569_77478979_77479124_77479796_77479937_77480033_77480146_77482263_77482419_77483480_77483680_77484273_77484443_77487167_77487265_77488221_77488317_77490376_77490628_77490707_77490798_77491016_77491125_77492638_77492753_77493097_77493259_77496069_77496266_77496926
transcript_71475.nnic	chr5	-	815	5	NNC	ENSMUSG00000036256.14	novel	1200	6	NA	NA	46531	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	3.49106001094224	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTAAATTTTTTTTTAAT	NA	False	NA	NA	False	AATAAA	-13	NA	77509356	77497094	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_77497347_77499074_77499202_77499759_77499877_77503408_77503519_77509147
transcript_71476.known	chr5	-	1116	5	FSM	ENSMUSG00000036256.14	ENSMUST00000046746.10	1116	5	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_4	2.29128784747792	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTTTAATGACAATCA	NA	False	NA	NA	False	AATAAA	-21	NA	77555888	77497086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_77497347_77499074_77499202_77499759_77499877_77503408_77503519_77555386
transcript_71477.nnic	chr5	+	749	3	Intergenic	novelGene_103	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCAATGATTGAATCTTTT	NA	False	NA	NA	False	NA	NA	NA	81701717	81703974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr5_+_81702330_81703680_81703745_81703901
transcript_71479.known	chr5	+	799	1	FSM	ENSMUSG00000106926.2	ENSMUST00000200912.2	799	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	786	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCACCCATTGTATTTTT	NA	False	NA	NA	False	GATAAA	-27	NA	82484697	82485496	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_82484700_82485500
transcript_71480.known	chr5	-	3192	19	FSM	ENSMUSG00000029253.13	ENSMUST00000031170.10	3192	19	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_10	17.8879399334224	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCATCTTGTCTGTGGTG	NA	False	NA	-6	True	ATTAAA	-17	NA	86213442	86159882	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_86160187_86161278_86161370_86164060_86164216_86166247_86166344_86168687_86168811_86170237_86170343_86176992_86177050_86180247_86180331_86181423_86181571_86182089_86182370_86183274_86183449_86185170_86185773_86193150_86193361_86194237_86194440_86195442_86195543_86200029_86200101_86206013_86206106_86209862_86209907_86213186
transcript_71487.known	chr5	-	1469	7	FSM	ENSMUSG00000029253.13	ENSMUST00000199392.5	1469	7	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_1	11.2496913537908	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAACAAACCCA	NA	False	NA	NA	False	NA	NA	NA	86213410	86192624	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_86193361_86194237_86194440_86195442_86195543_86200029_86200101_86206013_86206106_86209862_86209907_86213186
transcript_71488.known	chr5	-	6590	33	FSM	ENSMUSG00000035898.14	ENSMUST00000039373.14	6590	33	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_13	11.1589632554956	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTCTTGAGTTGCAACT	7088	False	NA	-4	True	NA	NA	NA	86320662	86257145	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_86260648_86265882_86265978_86267191_86267280_86268386_86268515_86270163_86270358_86272169_86272288_86274327_86274400_86275558_86275629_86276534_86276599_86276686_86276739_86279071_86279201_86280300_86280382_86280476_86280567_86282832_86282939_86284167_86284350_86285675_86285754_86288214_86288296_86289406_86289486_86290263_86290332_86292193_86292338_86294933_86295001_86295663_86295741_86296727_86296791_86297868_86297973_86300425_86300550_86300684_86300808_86302212_86302294_86307062_86307175_86308137_86308233_86311937_86311967_86312555_86312651_86318413_86318477_86320526
transcript_7149.known	chr10	-	5137	13	FSM	ENSMUSG00000003746.17	ENSMUST00000003843.16	5137	13	0	0	0	0	multi-exon	TRUE	canonical	3	6	junction_11	2.28977194400568	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTGTCTTGTCACTGTG	5483	False	NA	NA	False	AATAAA	-19	NA	53951892	53780880	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_53783660_53784038_53784155_53795253_53795427_53796138_53796359_53801525_53801642_53809587_53809682_53810984_53811109_53853118_53853214_53890510_53890592_53901809_53901926_53906793_53906891_53950511_53951367_53951621
transcript_71494.known	chr5	+	3269	17	FSM	ENSMUSG00000035851.15	ENSMUST00000120498.8	3269	17	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_1	43.5918122329182	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGTATTTCCTTGTCT	NA	False	NA	13	True	AATAAA	-21	NA	86952091	86984518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_86952451_86963487_86963590_86964322_86964652_86964765_86965193_86967944_86968035_86968491_86968546_86969110_86969206_86970454_86970564_86970649_86970768_86974585_86974671_86975813_86975981_86978412_86978496_86979522_86979560_86979655_86979696_86979806_86979870_86981366_86981502_86983542
transcript_71495.known	chr5	+	4346	17	FSM	ENSMUSG00000035851.15	ENSMUST00000156363.8	4346	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	94.9825436264475	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGTATTTCCTTGTCT	NA	False	NA	13	True	AATAAA	-21	NA	86952354	86984518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_86952451_86957163_86957200_86963487_86963590_86964322_86964652_86964765_86965193_86967944_86968035_86969110_86969206_86970454_86970564_86970649_86970768_86974585_86974671_86975813_86977339_86978412_86978496_86979522_86979560_86979655_86979696_86979806_86979870_86981366_86981502_86983542
transcript_71498.known	chr5	-	1213	7	FSM	ENSMUSG00000029269.12	ENSMUST00000120150.2	1213	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGTCTGAGTTTATTATA	9832	False	NA	NA	False	AATAAA	-31	NA	87683005	87662547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_87662921_87665154_87665336_87668643_87668739_87669344_87669472_87678447_87678546_87681759_87681889_87682795
transcript_71499.nnic	chr5	+	379	3	Fusion	ENSMUSG00000007907.5_ENSMUSG00000007457.4	novel	1603	3	NA	NA	-62	-4	multi-exon	TRUE	canonical	1	1	junction_1	1	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATTTACTGTGTGTGACA	NA	False	NA	NA	False	AATAAA	-16	NA	88117255	88129399	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr5_+_88117416_88118497_88118572_88129254
transcript_7150.nnic	chr10	-	854	3	NNC	ENSMUSG00000038122.10	novel	7240	33	NA	NA	-235	-69347	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	5	52	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAACTCTCTGGGTTCATG	NA	False	NA	NA	False	NA	NA	NA	56105020	56099605	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_56099851_56100659_56100822_56104573
transcript_71500.known	chr5	+	1629	1	FSM	ENSMUSG00000070697.5	ENSMUST00000090413.6	1629	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2635	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTTTGTAATACCTATT	NA	False	NA	20	True	AATAAA	-22	NA	88702320	88703949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_88702300_88703900
transcript_71507.known	chr5	-	2538	10	FSM	ENSMUSG00000044221.15	ENSMUST00000078945.12	2538	10	0	0	0	0	multi-exon	FALSE	canonical	3	432	junction_9	46.2793450448229	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGTATATTTTCTTTAC	NA	False	NA	2	True	AATAAA	-36	NA	88824030	88807306	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_88808319_88810393_88810470_88810978_88811115_88811922_88812045_88813615_88813801_88818034_88818171_88819020_88819165_88820463_88820620_88821551_88821709_88823616
transcript_71508.known	chr5	-	2286	10	FSM	ENSMUSG00000044221.15	ENSMUST00000113234.8	2286	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	165.873073593064	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAATCAAAGTTCTGTATA	NA	False	NA	-8	True	AATAAA	-26	NA	88823525	88807316	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_88808319_88810393_88810470_88810978_88811115_88811922_88812045_88813615_88813801_88818034_88818171_88819020_88819165_88820463_88820620_88821551_88821709_88823353
transcript_71509.known	chr5	+	2705	6	FSM	ENSMUSG00000006262.16	ENSMUST00000006424.8	2705	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	7.75628777186613	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAAGGTAGGCAATCCTG	NA	False	NA	NA	False	AATAAA	-17	NA	88868729	88905848	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_88868981_88891162_88891330_88892915_88893010_88897383_88897518_88901018_88901183_88903953
transcript_7151.known	chr10	-	624	1	FSM	ENSMUSG00000071303.5	ENSMUST00000172445.4	624	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	332	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCCTCATGCGTAGTGTA	NA	False	NA	NA	False	NA	NA	NA	56231170	56230546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_56230500_56231200
transcript_71514.known	chr5	+	891	4	FSM	ENSMUSG00000006262.16	ENSMUST00000125171.2	891	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	8.64098759787715	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTGTTTGGGTATGTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	88868835	88897868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_88868981_88891162_88891330_88892915_88893010_88897383
transcript_71516.known	chr5	-	483	1	FSM	ENSMUSG00000095524.2	ENSMUST00000121563.2	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	122	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGTACACAAAGAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	88887588	88887105	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_88887100_88887600
transcript_71517.known	chr5	+	3078	7	FSM	ENSMUSG00000029366.11	ENSMUST00000031311.10	3078	7	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_6	17.3052657368277	444	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGAGACTTTAAAATTTTC	NA	False	NA	27	True	AATAAA	-24	NA	88912854	88931140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_88913206_88917462_88917579_88920488_88920683_88921940_88922089_88924715_88924832_88926220_88926312_88929078
transcript_7152.nic	chr10	+	889	3	ISM	ENSMUSG00000112833.2	ENSMUST00000218830.2	2006	6	-312	36045	-312	-36045	5prime_fragment	TRUE	canonical	1	1	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTCTAAGTTCGATGTG	NA	False	NA	NA	False	AATAAA	-19	NA	56307764	56316018	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_56308280_56314631_56314747_56315759
transcript_71525.known	chr5	-	1333	6	FSM	ENSMUSG00000035505.15	ENSMUST00000048363.10	1333	6	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_3	53.4714877294432	706	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCTGGTGAGATAATTTC	NA	False	NA	-4	True	AATAAA	-16	NA	90371860	90362582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_90363035_90365375_90365484_90366770_90366893_90367218_90367383_90370089_90370191_90371474
transcript_71526.known	chr5	-	1307	6	FSM	ENSMUSG00000035505.15	ENSMUST00000118816.6	1307	6	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_3	54.1833922895199	646	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCTGGTGAGATAATTTC	NA	False	NA	-4	True	AATAAA	-16	NA	90371831	90362582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_90363035_90365375_90365484_90366770_90366896_90367218_90367383_90370089_90370191_90371474
transcript_71535.nic	chr5	-	761	4	ISM	ENSMUSG00000055204.16	ENSMUST00000218526.2	4938	27	412	45152	412	-6054	5prime_fragment	FALSE	canonical	1	45	junction_3	45.4386032649185	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAAAAAAGAAAGGA	NA	False	NA	NA	False	NA	NA	NA	90513632	90446203	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_90446547_90447847_90448005_90451770_90451925_90513525
transcript_71538.known	chr5	-	1037	5	FSM	ENSMUSG00000055204.16	ENSMUST00000199096.2	1037	5	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_2	15.7856738848869	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATTTTTCGTGATTGTTA	NA	False	NA	-4	True	AATAAA	-14	NA	90411182	90401214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_90401802_90402498_90402671_90406292_90406410_90407943_90408040_90411117
transcript_71541.known	chr5	+	588	3	FSM	ENSMUSG00000029373.8	ENSMUST00000031320.8	588	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGTCATAAAGTCAAGCTA	NA	False	NA	NA	False	AATAAA	-14	NA	90920293	90921242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_90920538_90920770_90920904_90921031
transcript_71542.known	chr5	+	953	4	FSM	ENSMUSG00000029380.12	ENSMUST00000031327.9	953	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATAACATGGGTGCTT	NA	False	NA	NA	False	AATAAA	-12	NA	91039099	91040974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_91039240_91039328_91039453_91039567_91039649_91040366
transcript_71543.known	chr5	+	5068	4	FSM	ENSMUSG00000034981.10	ENSMUST00000040576.10	5068	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	0.816496580927726	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAGGTCGCTCTGATCTTG	NA	False	NA	NA	False	AATAAA	-20	NA	91665473	91774753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_91665817_91741676_91742361_91760856_91760936_91770791
transcript_71545.known	chr5	-	1967	9	FSM	ENSMUSG00000029397.16	ENSMUST00000031345.15	1967	9	0	0	0	0	multi-exon	FALSE	canonical	3	292	junction_5	17.5926120857592	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTTTTATGGATGAATG	1335	False	NA	NA	False	TATAAA	-18	NA	92110927	92096762	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_92097724_92099679_92099801_92100799_92100827_92100911_92100971_92101072_92101118_92103393_92103473_92105393_92105510_92105736_92105857_92110488
transcript_7155.known	chr10	+	754	1	FSM	ENSMUSG00000112825.2	ENSMUST00000219246.2	754	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	718	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCATTGAACATTCCTGGG	NA	False	NA	NA	False	NA	NA	NA	56373436	56374190	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_56373400_56374200
transcript_71552.known	chr5	+	650	5	FSM	ENSMUSG00000102644.6	ENSMUST00000192939.6	650	5	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_1	9.73075022801428	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTCACTGAGGAAGACAAT	NA	False	NA	NA	False	AAAACA	-8	NA	92110748	92117525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_92110838_92111541_92111645_92112954_92113164_92114310_92114434_92117399
transcript_71554.known	chr5	+	3151	5	FSM	ENSMUSG00000102644.6	ENSMUST00000191860.2	3151	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	9.73075022801428	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTGGGTTTTTTTAA	NA	False	NA	NA	False	AATAAA	-16	NA	92111191	92119925	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_92111382_92111541_92111645_92112954_92113164_92114310_92114434_92117399
transcript_71566.known	chr5	-	1046	1	FSM	ENSMUSG00000029397.16	ENSMUST00000200905.2	1046	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATAAGAAAAAAAAAAAAA	1677	False	NA	NA	False	NA	NA	NA	92110585	92109539	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_92109500_92110600
transcript_71570.known	chr5	-	3026	12	FSM	ENSMUSG00000029405.17	ENSMUST00000164378.8	3026	12	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_11	607.25013567123	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTGTTCTTCAGTTAAC	NA	False	NA	-9	True	AGTAAA	-17	NA	92231097	92201575	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92230608
transcript_71572.known	chr5	-	1884	12	FSM	ENSMUSG00000029405.17	ENSMUST00000202258.4	1884	12	0	0	0	0	multi-exon	FALSE	canonical	3	524	junction_5	444.293682188997	921	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATGCCCACTGAGTTCA	NA	False	NA	NA	False	AATGAA	-19	NA	92231517	92202358	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
transcript_71575.known	chr5	-	4182	11	FSM	ENSMUSG00000029405.17	ENSMUST00000113127.7	4182	11	0	0	0	0	multi-exon	FALSE	canonical	3	1117	junction_4	208.26764030929	774	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTTATCTATGTCCCTA	NA	False	NA	-18	True	AATAAA	-15	NA	92231578	92200022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
transcript_7158.known	chr10	+	2604	12	FSM	ENSMUSG00000019878.9	ENSMUST00000079833.6	2604	12	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_10	23.7006119808005	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATTCCTTCTCATTGTT	NA	False	NA	13	True	NA	NA	NA	57362491	57389231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_57362698_57371993_57372103_57372250_57372379_57373592_57373718_57375511_57375588_57377465_57377528_57378718_57378807_57380677_57380827_57381241_57381479_57382292_57382399_57387539_57387625_57387998
transcript_71593.known	chr5	-	4232	11	FSM	ENSMUSG00000029405.17	ENSMUST00000167918.8	4232	11	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_10	456.056180749697	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTTAATCTGAAGTTATA	NA	False	NA	0	True	AATAAA	-33	NA	92231416	92200004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231193
transcript_71594.known	chr5	-	2716	12	FSM	ENSMUSG00000029405.17	ENSMUST00000169094.8	2716	12	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_11	559.822935407495	1239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTGTTCTTCAGTTAAC	NA	False	NA	-9	True	AGTAAA	-17	NA	92231372	92201575	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231193
transcript_71595.known	chr5	+	3898	24	FSM	ENSMUSG00000029407.11	ENSMUST00000031355.10	3898	24	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_12	100.480471444838	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAATCTCTGTCATTGTTC	NA	False	NA	10	True	AATAAA	-18	NA	92285796	92350654	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_92286023_92300299_92300387_92300710_92300776_92306262_92306340_92314389_92314491_92314884_92314988_92315136_92315193_92318531_92318653_92321784_92321964_92325293_92325435_92328400_92328490_92329198_92329354_92329756_92329969_92335093_92335205_92335556_92335676_92335801_92335984_92337081_92337204_92340571_92340711_92341870_92342035_92343206_92343294_92346194_92346294_92347675_92347784_92348993_92349210_92349715
transcript_7160.nic	chr10	+	1147	8	ISM	ENSMUSG00000019878.9	ENSMUST00000079833.6	2604	12	-19	8220	-8	0	5prime_fragment	FALSE	canonical	3	186	junction_7	20.8012950931191	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGAAAATTGATGACTTT	NA	False	NA	NA	False	NA	NA	NA	57362472	57381011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_57362698_57371993_57372103_57372250_57372379_57373592_57373718_57375511_57375588_57377465_57377528_57378718_57378807_57380677
transcript_71601.known	chr5	+	2427	12	FSM	ENSMUSG00000029407.11	ENSMUST00000201642.2	2427	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	139.72251130469	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATCTCTGTCATTGTTCC	NA	False	NA	11	True	AATAAA	-19	NA	92285824	92350655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_92286023_92300299_92300360_92335563_92335676_92335801_92335984_92337081_92337204_92340571_92340711_92341870_92342035_92343206_92343294_92346194_92346294_92347675_92347784_92348993_92349210_92349715
transcript_71604.nnic	chr5	+	596	4	NNC	ENSMUSG00000029407.11	novel	3549	13	NA	NA	-81	-30460	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	221.052532720668	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAAGATTTTGATTTGTA	NA	False	NA	NA	False	NA	NA	NA	92285715	92301454	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_92286023_92300299_92300387_92300710_92300776_92301317
transcript_71605.known	chr5	-	636	1	FSM	ENSMUSG00000084111.5	ENSMUST00000121821.2	636	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28281	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTGGAGAGTTGCA	NA	False	NA	NA	False	AAAAAG	-44	NA	92288788	92288152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_92288200_92288800
transcript_71608.nnic	chr5	-	804	3	NNC	ENSMUSG00000029410.12	novel	2878	17	NA	NA	22	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	10	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTACCTGTGTGTTTGCT	NA	False	NA	NA	False	NA	NA	NA	92376858	92374537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_92375087_92376505_92376594_92376691
transcript_71609.known	chr5	-	732	3	FSM	ENSMUSG00000029410.12	ENSMUST00000201236.2	732	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	11	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAATTACCTG	NA	False	NA	NA	False	NA	NA	NA	92376880	92374547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_92375087_92376505_92376594_92376775
transcript_7161.known	chr10	-	2880	9	FSM	ENSMUSG00000019877.11	ENSMUST00000020027.11	2880	9	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_6	44.2279252848243	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTGGTGGTAGCATTACA	NA	False	NA	NA	False	AATAAA	-16	NA	57408626	57391869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_57393389_57395458_57395690_57395793_57395939_57399051_57399313_57400056_57400195_57400415_57400496_57401420_57401591_57403760_57403923_57408452
transcript_71610.nnic	chr5	-	709	3	NNC	ENSMUSG00000029410.12	novel	2878	17	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	9	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTACCTGTGTGTTTGCT	NA	False	NA	NA	False	NA	NA	NA	92376910	92374537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_92375087_92376505_92376594_92376838
transcript_71612.known	chr5	-	1629	11	FSM	ENSMUSG00000029413.15	ENSMUST00000159345.8	1629	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	12.5892811550144	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAACTCTGACTTTTGAT	9203	False	NA	NA	False	AGTAAA	-14	NA	92426024	92406291	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_92406803_92407412_92407491_92409210_92409240_92410367_92410435_92411268_92411332_92411449_92411623_92412939_92413017_92415900_92415992_92420302_92420430_92424777_92424937_92425770
transcript_71619.known	chr5	-	1519	2	FSM	ENSMUSG00000029413.15	ENSMUST00000161212.2	1519	2	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGAATGGTGTCTAAGTGG	9203	False	NA	NA	False	NA	NA	NA	92426024	92423677	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_92424943_92425770
transcript_71620.known	chr5	-	5020	22	FSM	ENSMUSG00000029415.5	ENSMUST00000031364.5	5020	22	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_13	31.6626205793221	689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGTGAAATCTCTCCAT	NA	False	NA	-6	True	AATAAA	-17	NA	92457883	92431868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_92434730_92436325_92436488_92437598_92437684_92437779_92437971_92438116_92438212_92438871_92438999_92439565_92439643_92439744_92439843_92440511_92440589_92441821_92441881_92443869_92443928_92444978_92445083_92446050_92446121_92447920_92448023_92449670_92449746_92450497_92450556_92451524_92451626_92451742_92451815_92452831_92452943_92453062_92453162_92453591_92453697_92457650
transcript_71624.nic	chr5	-	968	9	ISM	ENSMUSG00000029415.5	ENSMUST00000201143.2	2156	22	-142	13321	-12	1573	5prime_fragment	FALSE	canonical	3	301	junction_1	29.698484809835	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGGCTGTGCCTGAGAAT	NA	False	NA	0	True	AAAACA	-36	NA	92457895	92447920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_92448023_92449670_92449746_92450497_92450556_92451524_92451626_92451742_92451815_92452831_92452943_92453062_92453162_92453591_92453697_92457650
transcript_71625.known	chr5	-	996	8	FSM	ENSMUSG00000029415.5	ENSMUST00000202604.2	996	8	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_2	27.4456791885799	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACCAAAATAAGAAGGAA	NA	False	NA	NA	False	NA	NA	NA	92457848	92449493	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_92449746_92450497_92450556_92451524_92451626_92451742_92451815_92452831_92452943_92453062_92453162_92453591_92453697_92457650
transcript_71628.nic	chr5	-	929	7	ISM	ENSMUSG00000029415.5	ENSMUST00000202604.2	996	8	-47	866	-12	-866	5prime_fragment	FALSE	canonical	3	305	junction_1	29.5883798512562	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTTTGCCTTTGATACCT	NA	False	NA	NA	False	AAAAAG	-4	NA	92457895	92450359	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_92450556_92451524_92451626_92451742_92451815_92452831_92452943_92453062_92453162_92453591_92453697_92457650
transcript_71631.known	chr5	-	2156	22	FSM	ENSMUSG00000029415.5	ENSMUST00000201143.2	2156	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	77.7590324025538	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGTCAAGGAACACTATAAT	NA	False	NA	-36	True	ATTAAA	-1	NA	92457753	92434599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_92434730_92436325_92436488_92437598_92437684_92437779_92437971_92438116_92438212_92438871_92438999_92439565_92439643_92439744_92439843_92440511_92440589_92441821_92441881_92443869_92443928_92444978_92445083_92446050_92446118_92447920_92448023_92449670_92449746_92450497_92450556_92451524_92451626_92451742_92451815_92452831_92452943_92453062_92453162_92453591_92453697_92457650
transcript_71634.known	chr5	-	1094	4	FSM	ENSMUSG00000034855.14	ENSMUST00000038816.13	1094	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTCATGTGACTGAGAATT	8851	False	NA	NA	False	AATAAA	-22	NA	92496741	92494496	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_92495245_92495663_92495754_92495947_92496075_92496612
transcript_71638.known	chr5	-	2352	12	FSM	ENSMUSG00000034826.15	ENSMUST00000038514.15	2352	12	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_1	63.2088235288462	622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTCTGGTGTTTTATTT	NA	False	NA	0	True	AATAAA	-25	NA	92583078	92563398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_92564198_92565311_92565423_92565639_92565760_92567375_92567484_92570340_92570435_92570835_92570891_92572132_92572330_92573481_92573670_92575958_92576186_92578659_92578813_92578897_92578982_92582862
transcript_71639.known	chr5	-	631	4	FSM	ENSMUSG00000034826.15	ENSMUST00000122893.2	631	4	0	0	0	0	multi-exon	FALSE	canonical	3	581	junction_1	53.8908361618395	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTCTTGTTTTTTTAGTA	NA	False	NA	NA	False	ATTAAA	-16	NA	92582950	92575879	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_92576186_92578659_92578813_92578897_92578982_92582862
transcript_71640.known	chr5	-	4698	12	FSM	ENSMUSG00000029426.9	ENSMUST00000031377.9	4698	12	0	0	0	0	multi-exon	TRUE	canonical	3	99	junction_7	16.1496104397404	278	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCACTGTGAACTGTCTC	NA	False	NA	-11	True	ATTAAA	-16	NA	92653496	92589172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_92592144_92594162_92594322_92596403_92596456_92597729_92597804_92599205_92599325_92601898_92602069_92602590_92602711_92607900_92607993_92608612_92608802_92609795_92609944_92633055_92633214_92653050
transcript_71643.known	chr5	+	1985	2	FSM	ENSMUSG00000047963.8	ENSMUST00000050952.4	1985	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCAATGTCTCATTTGTTT	NA	False	NA	NA	False	AATAAA	-25	NA	92750909	92754438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_92751197_92752740
transcript_71648.known	chr5	+	6435	10	FSM	ENSMUSG00000029381.17	ENSMUST00000113051.9	6435	10	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	24.0066863114075	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGTCAAATTGAATATGGA	NA	False	NA	7	True	AATGAA	-12	NA	93045851	93113167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_93046080_93067503_93067636_93081612_93081745_93087835_93090999_93096262_93096337_93098342_93099180_93100397_93100890_93103119_93103271_93109949_93110223_93112214
transcript_71650.known	chr5	+	687	3	FSM	ENSMUSG00000029381.17	ENSMUST00000172706.2	687	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	41.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACGCCTTCCCCGTCTTGG	NA	False	NA	NA	False	NA	NA	NA	93073265	93088314	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_93073342_93081612_93081745_93087835
transcript_71652.known	chr5	+	6401	10	FSM	ENSMUSG00000029381.17	ENSMUST00000113054.9	6401	10	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_1	38.4967531098403	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATATGGAGATTTTTGCG	2180	False	NA	17	True	AATGAA	-22	NA	92957236	93113177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_92957421_93067503_93067636_93081612_93081745_93087835_93090999_93096262_93096337_93098342_93099180_93100397_93100890_93103119_93103271_93109949_93110223_93112214
transcript_71653.known	chr5	-	3900	1	FSM	ENSMUSG00000045314.6	ENSMUST00000061328.6	3900	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCTTTCTCTTGTCTAT	63	False	NA	-4	True	NA	NA	NA	93192881	93188981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_93189000_93192900
transcript_71654.known	chr5	+	5028	10	FSM	ENSMUSG00000058013.12	ENSMUST00000074733.11	5028	10	0	0	0	0	multi-exon	FALSE	canonical	3	652	junction_7	47.9165942028438	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTGTGTGCCCGTTTGTG	NA	False	NA	12	True	AATATA	-17	NA	93241295	93322817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_93241457_93287307_93287423_93296245_93296442_93302728_93302916_93304709_93304872_93309008_93309106_93309982_93310152_93313107_93313241_93315358_93315547_93319197
transcript_71657.known	chr5	+	1792	10	FSM	ENSMUSG00000058013.12	ENSMUST00000202308.4	1792	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_9	237.094813560491	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGCCCATCCCTGCCT	NA	False	NA	4	True	TTTAAA	-16	NA	93241309	93324296	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_93241457_93287307_93287423_93296245_93296442_93302728_93302916_93304709_93304872_93309008_93309106_93309982_93310152_93313107_93313241_93315358_93315547_93323898
transcript_71658.known	chr5	+	3478	9	FSM	ENSMUSG00000058013.12	ENSMUST00000201700.4	3478	9	0	0	0	0	multi-exon	FALSE	canonical	3	652	junction_7	50.8046196226288	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGTCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	93241296	93317617	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_93241457_93287307_93287423_93296245_93296442_93302728_93302916_93304709_93304872_93309008_93309106_93309982_93310152_93313107_93313241_93315358
transcript_71660.nic	chr5	+	1512	5	ISM	ENSMUSG00000058013.12	ENSMUST00000201700.4	3478	9	-2	12056	-1	0	5prime_fragment	FALSE	canonical	3	719	junction_4	22.6867251933813	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATATCATAGTACTTTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	93241294	93305561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_93241457_93287307_93287423_93296245_93296442_93302728_93302916_93304709
transcript_71662.known	chr5	-	2804	7	FSM	ENSMUSG00000063015.13	ENSMUST00000058550.15	2804	7	0	0	0	0	multi-exon	FALSE	canonical	3	340	junction_6	48.6052694902746	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGTGTAGGAGTTTTTG	NA	False	NA	-2	True	AATAAA	-18	NA	93354354	93329791	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_93331280_93335446_93335678_93335938_93336080_93337005_93337081_93337422_93337552_93350163_93350322_93353772
transcript_71664.known	chr5	-	507	2	FSM	ENSMUSG00000063015.13	ENSMUST00000123033.2	507	2	0	0	0	0	multi-exon	FALSE	canonical	3	346	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	93336079	93335311	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_93335678_93335938
transcript_71665.known	chr5	+	917	1	FSM	ENSMUSG00000029384.6	ENSMUST00000201993.2	917	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAAACAAAAAAAAAACCC	NA	False	NA	NA	False	NA	NA	NA	93354391	93355308	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_93354400_93355300
transcript_71666.known	chr5	+	2570	7	FSM	ENSMUSG00000029385.15	ENSMUST00000121127.2	2570	7	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_2	9.62057979310787	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTATTCCTATTTCAGT	NA	False	NA	NA	False	AATAAA	-21	NA	93416172	93424083	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_93416619_93417123_93417262_93418652_93418904_93419059_93419139_93419221_93419321_93421196_93421403_93422732
transcript_71668.known	chr5	-	1848	4	FSM	ENSMUSG00000096066.5	ENSMUST00000201031.4	1848	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.88561808316413	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGATGTTATTCCTGAAC	NA	False	NA	NA	False	AATAAA	-18	NA	95420627	95416351	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_95417221_95418116_95418708_95419160_95419475_95420553
transcript_71679.known	chr5	+	1550	7	FSM	ENSMUSG00000029486.14	ENSMUST00000121477.2	1550	7	0	0	0	0	multi-exon	FALSE	canonical	3	666	junction_1	19.5078331845327	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGGTGTTTTACAGTTA	NA	False	NA	NA	False	AATAAA	-21	NA	96358002	96387543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_96358053_96361645_96361770_96371629_96371892_96374143_96374228_96375538_96375611_96379539_96379652_96386697
transcript_71680.known	chr5	+	1595	13	FSM	ENSMUSG00000029484.13	ENSMUST00000031447.12	1595	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.64991582276861	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGTGCTTCTGTTACTT	NA	False	NA	NA	False	AATACA	-15	NA	96941243	96993825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_96941423_96945259_96945313_96958908_96958997_96960700_96960796_96964199_96964314_96968260_96968352_96972745_96972826_96976206_96976264_96976555_96976650_96978251_96978348_96982633_96982693_96986151_96986275_96993359
transcript_71682.known	chr5	-	1159	1	FSM	ENSMUSG00000105006.2	ENSMUST00000195892.2	1159	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCGCTGTTTTCTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	97145223	97144064	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_97144100_97145200
transcript_71683.known	chr5	-	3424	2	FSM	ENSMUSG00000046000.6	ENSMUST00000060265.6	3424	2	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_1	0	179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAAGTGAGTTAATAACAT	NA	False	NA	-3	True	AATAAA	-19	NA	97540238	97530056	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_97532729_97539486
transcript_71687.known	chr5	+	570	5	FSM	ENSMUSG00000097516.8	ENSMUST00000181724.8	570	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.29903810567666	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATGCTGGAATGATTATA	NA	False	NA	NA	False	AATAAA	-12	NA	97540275	97790038	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_97540367_97543228_97543355_97581769_97581831_97693416_97693469_97789798
transcript_71688.known	chr5	+	1018	7	FSM	ENSMUSG00000057816.8	ENSMUST00000196339.2	1018	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAACTGTAATCTGGACT	NA	False	NA	NA	False	AATAAA	-13	NA	98477228	98949906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_98477324_98494090_98494222_98646147_98646239_98846264_98846460_98885427_98885571_98932277_98932408_98949673
transcript_71690.known	chr5	+	677	6	FSM	ENSMUSG00000105078.3	ENSMUST00000198837.3	677	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2.03960780543711	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTACAGAGCTCTGCACCCA	NA	False	NA	NA	False	AATAAA	-13	NA	100054174	100098951	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_100054265_100067054_100067126_100070875_100070973_100072700_100072803_100089084_100089247_100098796
transcript_71694.nnic	chr5	+	421	3	NNC	ENSMUSG00000105078.3	novel	677	6	NA	NA	7118	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	1	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTACAGAGCTCTGCACCCA	NA	False	NA	NA	False	AATAAA	-13	NA	100074184	100098951	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_100074289_100089084_100089247_100098796
transcript_717.nic	SIRV7	-	932	5	NIC	SIRV7A	novel	949	5	NA	NA	-11	0	intron_retention	FALSE	canonical	3	2098	junction_4	2004.60063042492	5624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAGAGATCGACGAAGTT	NA	False	NA	NA	False	NA	NA	NA	147968	56031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_SIRV7_-_56098_70883_70988_78841_78964_114680_114961_147608
transcript_7171.known	chr10	-	479	3	FSM	ENSMUSG00000019877.11	ENSMUST00000164400.2	479	3	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_2	9	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTCATTAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-22	NA	57408505	57401326	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_57401591_57403760_57403923_57408452
transcript_7172.known	chr10	-	2723	2	FSM	ENSMUSG00000019877.11	ENSMUST00000166997.2	2723	2	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	AAGAAA	-28	NA	57408573	57401320	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_57403923_57408452
transcript_71723.nnic	chr5	-	1073	7	NNC	ENSMUSG00000000568.16	novel	1537	7	NA	NA	-53	0	at_least_one_novel_splicesite	FALSE	canonical	2	184	junction_6	1739.8817408727	1071	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTGGCTCTTTTATCAT	NA	False	NA	NA	False	AATAAA	-17	NA	100126850	100108860	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_100109193_100110373_100110472_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115230_100126753
transcript_71727.known	chr5	-	1537	7	FSM	ENSMUSG00000000568.16	ENSMUST00000072750.13	1537	7	0	0	0	0	multi-exon	FALSE	canonical	3	1409	junction_2	1330.01989333493	1088	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTGGCTCTTTTATCAT	NA	False	NA	NA	False	AATAAA	-17	NA	100126794	100108860	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_100109193_100110373_100110472_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115247_100126250
transcript_71728.known	chr5	-	1117	8	FSM	ENSMUSG00000000568.16	ENSMUST00000171106.8	1117	8	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	1830.78456472873	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATTGGCTCTTTTATCA	NA	False	NA	NA	False	AATAAA	-16	NA	100124410	100108861	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_100109193_100109956_100110064_100110373_100110472_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115247_100124392
transcript_71736.known	chr5	-	1477	8	FSM	ENSMUSG00000029328.16	ENSMUST00000149384.8	1477	8	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_7	409.537668646996	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTGTTCATTCTTTAAGA	NA	False	NA	NA	False	NA	NA	NA	100186754	100183284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_100183599_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186432
transcript_7174.known	chr10	+	1961	8	FSM	ENSMUSG00000019872.14	ENSMUST00000020022.8	1961	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.57790871674104	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTGTTTGCCTTTGTTGT	NA	False	NA	NA	False	AATAAA	-30	NA	57670469	57687926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_57670881_57677006_57677221_57678515_57678661_57681662_57681760_57683450_57683621_57683972_57684154_57685141_57685267_57687308
transcript_71745.known	chr5	-	2374	7	FSM	ENSMUSG00000029328.16	ENSMUST00000153442.8	2374	7	0	0	0	0	multi-exon	FALSE	canonical	3	934	junction_3	92.4764234218046	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186728	100182579	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
transcript_71746.known	chr5	+	1420	7	FSM	ENSMUSG00000029326.14	ENSMUST00000031268.8	1420	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_6	172.72618021983	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAGTTTCATACAGACGT	NA	False	NA	15	True	AATAAA	-15	NA	100187902	100216619	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_100188162_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215657_100215801_100216154
transcript_71755.known	chr5	+	1833	6	FSM	ENSMUSG00000029326.14	ENSMUST00000169390.8	1833	6	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_1	20.2918702932973	1086	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAGTTTCATACAGACGT	NA	False	NA	15	True	AATAAA	-15	NA	100187843	100216619	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_100188162_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215657
transcript_7176.known	chr10	+	6547	23	FSM	ENSMUSG00000038039.14	ENSMUST00000057659.14	6547	23	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_12	11.5498381084143	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCATGACTACTGTTCTT	NA	False	NA	12	True	ATTAAA	-22	NA	58091318	58141421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_58091394_58091650_58091705_58092641_58092727_58094062_58094131_58103788_58103894_58105083_58107529_58108154_58108228_58110557_58110659_58110757_58110857_58112399_58112520_58114608_58114774_58116413_58116519_58117178_58117342_58121764_58121866_58121954_58122033_58122963_58123102_58124454_58124577_58126121_58126299_58128386_58128605_58130532_58130728_58131909_58132062_58134485_58134688_58139915
transcript_71760.nnic	chr5	+	1807	6	NNC	ENSMUSG00000029326.14	novel	1833	6	NA	NA	-3	0	intron_retention	FALSE	canonical	3	76	junction_1	168.151122505917	282	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAGTTTCATACAGACGT	NA	False	NA	15	True	AATAAA	-15	NA	100187840	100216619	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_100188133_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215657
transcript_71763.known	chr5	+	508	3	FSM	ENSMUSG00000100157.7	ENSMUST00000188902.2	508	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCATTCGACTGGGGCCC	NA	False	NA	NA	False	AATAAA	-13	NA	100358566	100364600	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_100358887_100363664_100363725_100364472
transcript_71764.known	chr5	+	1107	4	FSM	ENSMUSG00000100157.7	ENSMUST00000185221.7	1107	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.69967317119759	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCTGTTTACTTGGATAT	NA	False	NA	NA	False	AATAAA	-12	NA	100358550	100365908	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_100358887_100363664_100363725_100364472_100364581_100365305
transcript_7178.known	chr10	+	570	6	FSM	ENSMUSG00000038039.14	ENSMUST00000162984.2	570	6	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	36.223749115739	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTCTGAAGATAACGTGAGA	NA	False	NA	NA	False	NA	NA	NA	58091329	58105285	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_58091394_58091650_58091705_58092641_58092719_58094062_58094131_58103788_58103894_58105083
transcript_71785.nic	chr5	-	599	2	ISM	ENSMUSG00000035325.17	ENSMUST00000094578.11	4228	28	-20	46018	-20	15	5prime_fragment	FALSE	canonical	3	798	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTATTTATTTACCTTACA	8088	False	NA	NA	False	NA	NA	NA	100564113	100555525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_100555973_100563961
transcript_71786.known	chr5	-	4228	28	FSM	ENSMUSG00000035325.17	ENSMUST00000094578.11	4228	28	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_6	223.785378761883	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTTAGTCTTTATTTAT	8108	False	NA	-7	True	ATTAAA	-19	NA	100564093	100509507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100517454_100517494_100521238_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536392_100536471_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
transcript_71787.known	chr5	-	626	5	FSM	ENSMUSG00000097772.8	ENSMUST00000181873.8	626	5	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_4	12.3389626792531	3519	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATTAGAATGTTGTGTT	NA	False	NA	-7	True	AATAAA	-31	NA	100577394	100568700	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_100568832_100569826_100569901_100574594_100574664_100576955_100577098_100577184
transcript_71788.known	chr5	+	1836	1	FSM	ENSMUSG00000106391.2	ENSMUST00000197921.2	1836	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGTGCTTTTGGCTATGGT	7344	False	NA	NA	False	NA	NA	NA	100577584	100579420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_100577600_100579400
transcript_71789.known	chr5	-	434	1	FSM	ENSMUSG00000105181.2	ENSMUST00000195972.2	434	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGACATCCCATGCACGG	NA	False	NA	NA	False	NA	NA	NA	100661486	100661052	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_100661100_100661500
transcript_71799.known	chr5	+	1755	10	FSM	ENSMUSG00000035297.15	ENSMUST00000045993.15	1755	10	0	0	0	0	multi-exon	FALSE	canonical	3	1193	junction_9	105.134834062424	2869	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGTGTTCTATTCCTTTT	5273	False	NA	43	True	AATAAA	-45	NA	100666174	100695669	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_100666417_100675839_100675920_100676404_100676557_100677912_100678017_100681107_100681262_100681377_100681529_100685163_100685335_100689402_100689519_100691704_100691790_100695169
transcript_71800.known	chr5	-	744	5	FSM	ENSMUSG00000029322.13	ENSMUST00000031264.12	744	5	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	0.82915619758885	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGTTTTGTGTGTGGT	NA	False	NA	NA	False	AATAAA	-19	NA	100720111	100701590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_100701855_100704345_100704462_100707617_100707743_100710490_100710629_100720010
transcript_71802.known	chr5	-	1743	7	FSM	ENSMUSG00000029319.9	ENSMUST00000031262.9	1743	7	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_5	48.3206880009887	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGCGACTCTTCATTACAG	NA	False	NA	-1	True	AATAAA	-20	NA	100822150	100802588	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_100803338_100805683_100805873_100808037_100808172_100809702_100809789_100811445_100811568_100815757_100815925_100821854
transcript_71806.known	chr5	-	3689	18	FSM	ENSMUSG00000035266.17	ENSMUST00000044684.14	3689	18	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_16	11.2714232774287	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGGGTGATTAAGTCTA	NA	False	NA	5	True	ATTAAA	-26	NA	100946464	100910010	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_100910503_100912806_100912942_100914553_100914668_100916147_100916322_100918263_100918363_100919599_100919758_100921810_100922031_100926597_100926703_100927017_100927160_100930823_100931064_100933147_100933294_100934849_100934949_100938004_100938103_100939202_100939276_100939642_100939844_100940529_100940709_100944219_100944929_100946159
transcript_71807.known	chr5	-	1628	8	FSM	ENSMUSG00000035266.17	ENSMUST00000151201.2	1628	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_6	21.6455679584736	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAGAAAGAAAAATGCGAAG	NA	False	NA	NA	False	NA	NA	NA	100946443	100931045	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_100931064_100933147_100933294_100934849_100934949_100938004_100938103_100939202_100939276_100939642_100939844_100944219_100944929_100946159
transcript_71808.nnic	chr5	-	771	3	NNC	ENSMUSG00000035266.17	novel	442	3	NA	NA	564	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	46.5	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGCGCTCTGGGTGATTA	2431	False	NA	-1	True	ATTAAA	-20	NA	100914115	100910016	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_100910503_100912806_100912942_100913965
transcript_71809.nnic	chr5	-	747	3	NNC	ENSMUSG00000035266.17	novel	442	3	NA	NA	554	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	45.5	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGCGCTCTGGGTGATTA	2421	False	NA	-1	True	ATTAAA	-20	NA	100914125	100910016	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_100910503_100912806_100912942_100913999
transcript_7181.nic	chr10	+	442	5	ISM	ENSMUSG00000038039.14	ENSMUST00000057659.14	6547	23	-80	37553	-80	0	5prime_fragment	FALSE	canonical	3	81	junction_2	9.09670269933013	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTTAAAATGAAGCAAGAGG	NA	False	NA	NA	False	AAAAAG	-41	NA	58091238	58103868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_58091394_58091650_58091705_58092641_58092727_58094062_58094131_58103788
transcript_71810.nnic	chr5	-	674	3	NNC	ENSMUSG00000035266.17	novel	442	3	NA	NA	558	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	45	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGCGCTCTGGGTGATTA	2425	False	NA	-1	True	ATTAAA	-20	NA	100914121	100910016	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_100910503_100912806_100912942_100914068
transcript_71812.nic	chr5	-	1119	2	ISM	ENSMUSG00000035266.17	ENSMUST00000151201.2	1628	8	-37	13085	-16	-4493	5prime_fragment	FALSE	canonical	3	68	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCGTCTCTGATCTCGAA	NA	False	NA	NA	False	ATTAAA	-30	NA	100946480	100944130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_100944929_100946159
transcript_71816.known	chr5	+	457	5	FSM	ENSMUSG00000016833.15	ENSMUST00000198453.2	457	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	769.215631341433	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTGAGTGGAAATGTCT	NA	False	NA	48	True	AATAAA	-30	NA	100946608	100952334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_100946727_100949773_100949858_100950918_100950977_100951835_100951896_100952197
transcript_71821.known	chr5	+	638	6	FSM	ENSMUSG00000016833.15	ENSMUST00000016977.15	638	6	0	0	0	0	multi-exon	FALSE	canonical	3	1615	junction_5	130.796636042369	13228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGTGGAAATGTCTTTC	NA	False	NA	51	True	AATAAA	-33	NA	100946492	100952337	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_100946727_100947417_100947480_100949773_100949858_100950918_100950977_100951835_100951896_100952197
transcript_71822.known	chr5	+	460	5	FSM	ENSMUSG00000016833.15	ENSMUST00000112898.8	460	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	755.69086768334	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCAACTAATTTGAGTGGA	NA	False	NA	41	True	AATAAA	-23	NA	100946602	100952327	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_100946727_100947417_100947480_100949773_100949858_100951835_100951896_100952197
transcript_71823.known	chr5	+	820	5	FSM	ENSMUSG00000016833.15	ENSMUST00000112901.2	820	5	0	0	0	0	multi-exon	FALSE	canonical	3	1751	junction_2	88.8295418202751	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGTGGAAATGTCTTTC	NA	False	NA	51	True	AATAAA	-33	NA	100946612	100952337	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_100946727_100947417_100947480_100949773_100949858_100950918_100950977_100951835
transcript_71827.known	chr5	-	1657	10	FSM	ENSMUSG00000035234.19	ENSMUST00000117364.8	1657	10	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	36.8299395118217	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGTAAAGTTTGTAAT	NA	False	NA	-14	True	AATAAA	-8	NA	100968806	100953068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_100953318_100953763_100954356_100954644_100954757_100957424_100957510_100957621_100957742_100959874_100960069_100963027_100963095_100965827_100965865_100966382_100966474_100968696
transcript_71829.known	chr5	-	2182	10	FSM	ENSMUSG00000035234.19	ENSMUST00000044535.14	2182	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	76.5999709892605	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTAATATCTTATTTTT	NA	False	NA	-3	True	AATAAA	-19	NA	100968809	100953057	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_100954356_100954644_100954757_100955740_100955806_100957424_100957510_100957621_100957742_100959874_100960069_100963027_100963095_100965827_100965865_100966382_100966474_100968696
transcript_71833.known	chr5	-	2139	9	FSM	ENSMUSG00000035234.19	ENSMUST00000055245.13	2139	9	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_2	23.2725025512943	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTAATATCTTATTTTT	NA	False	NA	-3	True	AATAAA	-19	NA	100968831	100953057	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_100954356_100954644_100954757_100957424_100957510_100957621_100957742_100959874_100960069_100963027_100963095_100965827_100965865_100966382_100966474_100968696
transcript_71844.known	chr5	-	358	2	FSM	ENSMUSG00000035234.19	ENSMUST00000131857.2	358	2	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_1	0	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAGA	NA	False	NA	NA	False	TTTAAA	-43	NA	100968806	100966225	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_100966474_100968696
transcript_71846.known	chr5	+	2884	13	FSM	ENSMUSG00000029314.15	ENSMUST00000031255.15	2884	13	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	3.86939558874797	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTGCATTATTCTTC	NA	False	NA	5	True	AATAAA	-16	NA	100994084	101046965	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_100994228_100994520_100994815_101005007_101005075_101031055_101031327_101032183_101032259_101032825_101032916_101033791_101033886_101037968_101038085_101039508_101039565_101040166_101040253_101040937_101041067_101041298_101041379_101045582
transcript_71847.known	chr5	-	637	2	FSM	ENSMUSG00000105097.2	ENSMUST00000196076.2	637	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGTTTGTTTGTTTCTT	NA	False	NA	NA	False	AATAAA	-41	NA	101851929	101845998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_101846547_101851840
transcript_7185.known	chr10	+	4327	10	FSM	ENSMUSG00000019920.19	ENSMUST00000020078.14	4327	10	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_4	23.8875968642854	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTTACATATCATTTAG	NA	False	NA	10	True	AATAAA	-19	NA	58159287	58260513	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_58159510_58234842_58235003_58243891_58243959_58245381_58245503_58245874_58246025_58248224_58248376_58249794_58249888_58252455_58252505_58254220_58254297_58257275
transcript_71854.nnic	chr5	+	874	2	NNC	ENSMUSG00000092354.8	novel	791	4	NA	NA	4806	674	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTGCTTGTCAAGTACCT	NA	False	NA	NA	False	AATAAA	-14	NA	101992826	101994950	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_101993560_101994809
transcript_71857.known	chr5	+	707	4	FSM	ENSMUSG00000092354.8	ENSMUST00000173965.8	707	4	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_2	58.0574428188726	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCAAGGATGTTAAAGGAG	NA	False	NA	-40	True	NA	NA	NA	101985307	101992143	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_101985425_101989616_101989710_101989836_101989940_101991749
transcript_71874.nic	chr5	+	698	3	NIC	ENSMUSG00000092354.8	novel	707	4	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	2	11	junction_2	14.5	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAATTTCCTTTGGCTCA	NA	False	NA	15	True	ATTAAA	-25	NA	101985268	101992198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_101985425_101989616_101989710_101991749
transcript_71877.known	chr5	+	619	3	FSM	ENSMUSG00000092354.8	ENSMUST00000174312.2	619	3	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_2	60.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAATTTCCTTTGGCTCA	NA	False	NA	15	True	ATTAAA	-25	NA	101988020	101992198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_101988098_101989616_101989710_101991749
transcript_71881.known	chr5	+	787	3	FSM	ENSMUSG00000092354.8	ENSMUST00000174864.2	787	3	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	52	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCAGGGCTCGGGGTGTTC	NA	False	NA	-77	True	AAAACA	-15	NA	101985317	101992106	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_101985425_101989616_101989940_101991749
transcript_71883.known	chr5	+	3439	18	FSM	ENSMUSG00000034573.15	ENSMUST00000199412.5	3439	18	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	14.0972892434624	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCATGCGTTTGTTTTCCT	NA	False	NA	NA	False	AGTAAA	-18	NA	103573057	103689300	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_103573403_103609999_103610120_103624812_103624992_103634570_103634637_103637473_103637660_103640088_103640177_103649232_103649779_103664193_103664290_103665353_103665436_103671435_103671656_103673619_103673695_103673799_103673981_103674861_103675016_103676629_103676769_103677513_103677667_103681084_103681268_103684579_103684743_103688837
transcript_71884.nnic	chr5	+	1865	10	NNC	ENSMUSG00000034573.15	novel	7915	48	NA	NA	50374	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	5.55999822364302	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACCTGTGTCATCTCACT	4806	False	NA	NA	False	AATATA	-42	NA	103727805	103746169	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_103727978_103728535_103728619_103730604_103730643_103734571_103734676_103735908_103736058_103737723_103737815_103738881_103739220_103741372_103741589_103742482_103742546_103745558
transcript_71886.nnic	chr5	+	388	3	NNC	ENSMUSG00000034573.15	novel	7915	48	NA	NA	50374	-15432	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	5.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAAGTCCTGTTGTTGTTG	4806	False	NA	NA	False	AATAAA	-31	NA	103727805	103730737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_103727978_103728535_103728619_103730604
transcript_71888.known	chr5	+	1613	7	FSM	ENSMUSG00000029313.19	ENSMUST00000126335.2	1613	7	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_2	18.46994555728	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGTTAATATTACATGGC	NA	False	NA	NA	False	ATTAAA	-13	NA	103840239	103964294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_103840470_103863215_103863272_103930989_103931111_103931521_103932380_103958928_103958974_103962847_103962935_103964078
transcript_71892.known	chr5	-	1825	7	FSM	ENSMUSG00000029311.17	ENSMUST00000031251.16	1825	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.86744175568088	187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTGTCCCTCTGTCTTT	NA	False	NA	NA	False	AATAAA	-30	NA	104169785	104137627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_104138461_104140683_104140801_104151037_104151176_104156444_104156552_104157660_104157793_104166039_104166148_104169395
transcript_71893.nic	chr5	+	1538	8	NIC	ENSMUSG00000029310.14	novel	995	6	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	64	junction_1	99.0728447730687	989	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTTTCAAGTTCTCCC	NA	False	NA	20	True	AATAAA	-23	NA	104194376	104213245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_104194705_104198443_104198684_104202137_104202234_104203355_104203443_104205972_104206085_104207501_104207649_104209539_104209625_104212802
transcript_71894.nnic	chr5	+	1259	8	NNC	ENSMUSG00000029310.14	novel	1488	8	NA	NA	-38	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	118.273808924677	859	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTTTCAAGTTCTCCC	NA	False	NA	20	True	AATAAA	-23	NA	104194696	104213245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_104194746_104198443_104198684_104202137_104202234_104203355_104203443_104205972_104206085_104207501_104207649_104209539_104209625_104212802
transcript_71895.known	chr5	+	1488	8	FSM	ENSMUSG00000029310.14	ENSMUST00000031250.14	1488	8	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_1	16.2468207250979	879	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTTTCAAGTTCTCCC	NA	False	NA	20	True	AATAAA	-23	NA	104194734	104213245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_104195013_104198443_104198684_104202137_104202234_104203355_104203443_104205972_104206085_104207501_104207649_104209539_104209625_104212802
transcript_719.known	SIRV7	-	949	5	FSM	SIRV7A	SIRV706	949	5	0	0	0	0	multi-exon	FALSE	canonical	3	3147	junction_1	1522.61994601411	7999	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAGAGATCGACGAAGTT	NA	False	NA	NA	False	NA	NA	NA	147957	56031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV7_-_56098_70883_70988_78841_78964_114680_114989_147608
transcript_7190.nic	chr10	+	1514	2	ISM	ENSMUSG00000019920.19	ENSMUST00000020078.14	4327	10	5	24374	5	-10019	5prime_fragment	FALSE	canonical	3	317	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACCTTCCATTTGTGAA	NA	False	NA	NA	False	AAAACA	-38	NA	58159292	58236139	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_58159510_58234842
transcript_71910.known	chr5	+	1410	7	FSM	ENSMUSG00000029304.15	ENSMUST00000031243.15	1410	7	0	0	0	0	multi-exon	FALSE	canonical	3	5474	junction_3	341.773032223953	18258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTGGTGGTGTCAATT	NA	False	NA	31	True	AATAAA	-18	NA	104582983	104588916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_104583063_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
transcript_71911.known	chr5	+	1456	7	FSM	ENSMUSG00000029304.15	ENSMUST00000112748.8	1456	7	0	0	0	0	multi-exon	FALSE	canonical	3	593	junction_1	2050.93187491822	3518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGAGTCTGGTGGTGTCA	NA	False	NA	28	True	AATAAA	-15	NA	104582986	104588913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_104583115_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
transcript_71912.known	chr5	+	1507	6	FSM	ENSMUSG00000029304.15	ENSMUST00000112747.2	1507	6	0	0	0	0	multi-exon	FALSE	canonical	3	5474	junction_2	333.11595578717	2412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTAAGGAGTCTGGTGGT	NA	False	NA	24	True	AATAAA	-11	NA	104584057	104588909	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
transcript_71913.known	chr5	+	5219	15	FSM	ENSMUSG00000034462.10	ENSMUST00000086831.4	5219	15	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_14	9.78049913170622	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGGTGTTAAAAACACGT	NA	False	NA	9	True	AATAAA	-15	NA	104607315	104653685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_104608092_104614748_104614863_104624908_104625043_104626656_104626908_104628015_104628241_104630890_104631120_104634512_104634681_104637098_104637281_104638509_104638631_104642758_104642858_104646306_104646429_104646623_104646742_104647035_104647200_104650157_104650306_104651317
transcript_71915.known	chr5	+	5181	2	FSM	ENSMUSG00000097392.5	ENSMUST00000096452.7	5181	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGACTCAGCCAAAAGTG	NA	False	NA	NA	False	CATAAA	-22	NA	104656217	104670249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_104656438_104665288
transcript_71916.nnic	chr5	+	313	2	Intergenic	novelGene_104	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAGATGGAA	NA	False	NA	NA	False	AGTAAA	-25	NA	104918235	104927273	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr5_+_104918396_104927120
transcript_7192.nic	chr10	+	914	5	ISM	ENSMUSG00000003226.8	ENSMUST00000219332.2	2609	6	-98	3430	-98	-3430	5prime_fragment	FALSE	canonical	3	167	junction_4	13.9283882771841	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTGTGGATCTTTCTGT	NA	False	NA	NA	False	AATAAA	-14	NA	58282643	58291391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_58282874_58287805_58287874_58289133_58289246_58290394_58290548_58291040
transcript_71925.nnic	chr5	-	1498	7	NNC	ENSMUSG00000072774.11	novel	2904	5	NA	NA	54	10190	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_3	86.7437157506077	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATGGAAATTTTCTGCAAT	NA	False	NA	NA	False	AATAAA	-22	NA	105007882	104950844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_104951336_104952168_104952309_104953146_104953426_104963251_104963302_104964564_104964626_104964862_104964990_105007532
transcript_7193.known	chr10	+	2609	6	FSM	ENSMUSG00000003226.8	ENSMUST00000219332.2	2609	6	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_4	12.4643491607063	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	58282741	58294821	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_58282874_58287805_58287874_58289133_58289246_58290394_58290548_58291040_58291777_58293413
transcript_71936.known	chr5	-	2904	5	FSM	ENSMUSG00000072774.11	ENSMUST00000186219.7	2904	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_4	90.557647385519	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGAGGAATTGTGCGTT	NA	False	NA	-9	True	NA	NA	NA	105007936	104961034	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_104963302_104964564_104964626_104964862_104964990_104965173_104965219_105007532
transcript_7194.known	chr10	+	2455	16	FSM	ENSMUSG00000038010.10	ENSMUST00000036576.10	2455	16	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_12	10.0598210719674	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTAGAGTCCCTTCTTT	943	False	NA	NA	False	AATAAA	-24	NA	58333769	58412066	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_58333885_58334990_58335036_58335183_58335242_58343342_58343464_58345326_58345455_58348900_58349080_58359959_58360119_58363163_58363284_58364144_58364223_58364726_58364835_58374070_58374233_58376619_58376737_58380738_58380932_58397722_58397900_58409410_58409550_58411510
transcript_71941.nnic	chr5	-	1048	4	Genic_Genomic	ENSMUSG00000072774.11	novel	2904	5	NA	NA	-6	10190	multi-exon	FALSE	canonical	0	0	junction_3	30.6847772609735	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATGGAAATTTTCTGCAAT	NA	False	NA	NA	False	AATAAA	-22	NA	105007942	104950844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr5_-_104951336_104952168_104952309_104953146_104953426_105007804
transcript_71942.nnic	chr5	-	979	4	Genic_Genomic	ENSMUSG00000072774.11	novel	2904	5	NA	NA	-6	10121	multi-exon	FALSE	canonical	0	0	junction_3	30.6847772609735	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTCTTTTCATTTGTAT	NA	False	NA	NA	False	ATTAAA	-21	NA	105007942	104950913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr5_-_104951336_104952168_104952309_104953146_104953426_105007804
transcript_71944.nnic	chr5	-	2865	4	NIC	ENSMUSG00000072774.11	novel	2904	5	NA	NA	-6	0	combination_of_known_splicesites	FALSE	canonical	3	193	junction_3	15.5134350376268	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGAGGAATTGTGCGTT	NA	False	NA	-9	True	NA	NA	NA	105007942	104961034	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_104963302_104964564_104964626_104964862_104964990_105007532
transcript_71947.known	chr5	-	1923	2	FSM	ENSMUSG00000072774.11	ENSMUST00000191135.2	1923	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTTAAATGTTTGTTTCC	NA	False	NA	NA	False	AATAAA	-11	NA	105007659	104983585	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_104985382_105007532
transcript_71948.nnic	chr5	-	725	2	NNC	ENSMUSG00000072774.11	novel	2904	5	NA	NA	26	-9039	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTTTCTCTGGGAATTT	NA	False	NA	NA	False	AATATA	-18	NA	105007910	104992624	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_104992972_105007532
transcript_71966.known	chr5	+	3929	3	FSM	ENSMUSG00000046079.17	ENSMUST00000120847.8	3929	3	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_1	122	1049	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGTAGTGGTTCACAACCTT	4891	False	NA	19	True	AATAAA	-30	NA	105848654	105963076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_105848952_105880095_105880241_105959589
transcript_71969.known	chr5	-	393	1	FSM	ENSMUSG00000067058.8	ENSMUST00000132586.2	393	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15744	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATGTAAAGCATAAATAAAAG	NA	False	NA	NA	False	AAAACA	-35	NA	105945579	105945186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_105945200_105945600
transcript_71970.known	chr5	+	2667	12	FSM	ENSMUSG00000029290.13	ENSMUST00000031227.11	2667	12	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_1	8.12708968677346	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTTCTTTTGTCATGT	NA	False	NA	NA	False	AATACA	-16	NA	106024433	106063684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_106024565_106026614_106026660_106034052_106034089_106034182_106034295_106036299_106036706_106038983_106039183_106044357_106044470_106053780_106053929_106054904_106055005_106058036_106058168_106059278_106059375_106062533
transcript_71972.nic	chr5	+	1064	7	ISM	ENSMUSG00000029290.13	ENSMUST00000031227.11	2667	12	-50	19242	-47	71	5prime_fragment	FALSE	canonical	3	25	junction_1	3.39934634239519	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGTGAAAAATATGGAGATG	NA	False	NA	NA	False	NA	NA	NA	106024383	106044442	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_106024565_106026614_106026660_106034052_106034089_106034182_106034295_106036299_106036706_106038983_106039183_106044357
transcript_71973.nic	chr5	+	886	6	ISM	ENSMUSG00000029290.13	ENSMUST00000031227.11	2667	12	-50	24595	-47	3192	5prime_fragment	FALSE	canonical	3	25	junction_1	2.65329983228432	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATGCAAATATTTATTAAG	NA	False	NA	NA	False	AATAAA	-9	NA	106024383	106039089	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_106024565_106026614_106026660_106034052_106034089_106034182_106034295_106036299_106036706_106038983
transcript_71976.known	chr5	+	1554	10	FSM	ENSMUSG00000029290.13	ENSMUST00000138615.8	1554	10	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	13.4660065844828	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAGTTTAGTTTTTATAG	NA	False	NA	5	True	AATAAA	-16	NA	106024441	106063043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_106024565_106026614_106026660_106034052_106034143_106038983_106039183_106044357_106044470_106053780_106053929_106054904_106055005_106058036_106058168_106059278_106059375_106062533
transcript_71977.known	chr5	-	449	2	FSM	ENSMUSG00000099061.2	ENSMUST00000124394.3	449	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTTACGGTTCTGTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	106722584	106705604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_106705923_106722453
transcript_71981.known	chr5	-	1915	4	FSM	ENSMUSG00000049606.17	ENSMUST00000112695.4	1915	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	43.2897216438267	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACAGTGCCTCTAATGTGA	NA	False	NA	-19	True	AATAAA	-14	NA	106844463	106764609	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_106766295_106767405_106767509_106814650_106814712_106844397
transcript_71988.known	chr5	-	1484	3	FSM	ENSMUSG00000049606.17	ENSMUST00000142391.8	1484	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0.5	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAACAAAATAACAAA	NA	False	NA	NA	False	NA	NA	NA	106844032	106837685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_106838744_106843508_106843566_106843663
transcript_71989.known	chr5	-	642	3	FSM	ENSMUSG00000049606.17	ENSMUST00000148192.2	642	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	0.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGTTTGAATTTGATCCC	NA	False	NA	NA	False	NA	NA	NA	106844410	106838469	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_106838744_106843508_106843566_106844099
transcript_71990.known	chr5	-	2559	6	FSM	ENSMUSG00000049606.17	ENSMUST00000127434.8	2559	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	28.4351894665747	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAAGAAAAAATGACAGC	NA	False	NA	NA	False	NA	NA	NA	106844692	106784672	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_106786502_106814650_106814712_106829769_106829880_106838536_106838744_106843508_106843566_106844397
transcript_71991.known	chr5	-	518	2	FSM	ENSMUSG00000049606.17	ENSMUST00000155495.8	518	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGAGTCTTGCTCCACTT	NA	False	NA	NA	False	AATGAA	-45	NA	106844516	106786102	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_106786502_106844397
transcript_71999.nnic	chr5	-	1231	6	NIC	ENSMUSG00000043410.17	novel	1440	10	NA	NA	-22	-14837	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	4.22374241638858	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTAGTTAGCCGTAAGTC	NA	False	NA	NA	False	AATAAA	-16	NA	107074146	107064773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_107065494_107066242_107066356_107068828_107068943_107070678_107070777_107072696_107072799_107074062
transcript_72.known	ERCC-00150	+	727	1	FSM	ERCC-00150A	DQ883659	727	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00150_+_0_700
transcript_72001.nic	chr5	-	1117	5	NIC	ENSMUSG00000043410.17	novel	5018	40	NA	NA	-22	-14837	combination_of_known_junctions	FALSE	canonical	3	5	junction_2	3.96074487943871	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTAGTTAGCCGTAAGTC	NA	False	NA	NA	False	AATAAA	-16	NA	107074146	107064773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_107065494_107066242_107066356_107070678_107070777_107072696_107072799_107074062
transcript_72005.known	chr5	+	2961	12	FSM	ENSMUSG00000029283.18	ENSMUST00000031221.12	2961	12	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_8	37.8828119074671	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCAGAATACTTATTTAAA	NA	False	NA	10	True	AATAAA	-15	NA	107112187	107132298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_107112292_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107121887_107122466_107122563_107123350_107123527_107124495_107124579_107127160_107127311_107130829
transcript_72007.known	chr5	+	2864	11	FSM	ENSMUSG00000029283.18	ENSMUST00000117196.9	2864	11	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_7	74.2377262582846	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATCAGAATACTTATTTAA	NA	False	NA	9	True	AATAAA	-14	NA	107112187	107132297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_107112292_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107121887_107123350_107123527_107124495_107124579_107127160_107127311_107130829
transcript_72008.known	chr5	+	3129	12	FSM	ENSMUSG00000029283.18	ENSMUST00000118261.8	3129	12	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	77.2190187680738	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATCAGAATACTTATTTAA	NA	False	NA	9	True	AATAAA	-14	NA	107112426	107132297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_107112700_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107121887_107122466_107122563_107123350_107123527_107124495_107124579_107127160_107127311_107130829
transcript_72009.known	chr5	+	1607	7	FSM	ENSMUSG00000029279.16	ENSMUST00000112677.10	1607	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	0.74535599249993	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTAAACTTTGTGTTTGCC	NA	False	NA	NA	False	AGTAAA	-15	NA	107479040	107498607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_107479174_107489165_107489308_107489885_107490126_107491418_107491557_107493001_107493117_107496331_107496505_107497941
transcript_72010.known	chr5	+	4745	19	FSM	ENSMUSG00000029279.16	ENSMUST00000031215.15	4745	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	1.67405768592437	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATTCTGATCACAATTT	NA	False	NA	NA	False	NA	NA	NA	107479024	107534924	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_107479174_107489165_107489308_107489885_107490126_107491418_107491557_107493001_107493117_107496331_107496505_107497941_107498293_107504617_107504747_107505612_107505802_107506702_107506876_107507058_107507340_107507445_107507572_107507637_107507854_107517168_107517231_107518020_107518196_107524130_107524229_107524875_107525082_107525769_107525951_107533323
transcript_72015.known	chr5	-	2015	19	FSM	ENSMUSG00000029276.14	ENSMUST00000078021.13	2015	19	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_15	25.8010551033179	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTGCATAATTCTTTT	NA	False	NA	NA	False	CATAAA	-27	NA	107745505	107696832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_107697042_107697256_107697340_107698837_107698962_107705147_107705212_107705783_107705891_107706327_107706413_107708741_107708816_107708918_107708961_107709707_107709798_107710110_107710142_107710616_107710671_107717995_107718184_107720145_107720249_107721550_107721789_107723097_107723207_107726316_107726434_107741618_107741745_107744653_107744729_107745409
transcript_72024.known	chr5	+	2268	13	FSM	ENSMUSG00000033773.15	ENSMUST00000065422.12	2268	13	0	0	0	0	multi-exon	TRUE	canonical	3	138	junction_1	12.1951720866178	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTTTTCAGAAGCTGACA	NA	False	NA	26	True	AATAAA	-19	NA	107745600	107809704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_107745727_107746387_107746434_107749596_107749712_107751391_107751491_107751686_107751753_107754770_107754860_107766006_107766043_107767687_107768622_107771567_107771663_107773753_107773835_107780928_107780998_107803022_107803177_107809346
transcript_72028.known	chr5	+	2686	12	FSM	ENSMUSG00000033773.15	ENSMUST00000112655.8	2686	12	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_11	43.9966189534928	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTGTGTGTGTGTA	NA	False	NA	NA	False	CATAAA	-25	NA	107745639	107790788	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_107745727_107746387_107746434_107749596_107749712_107751391_107751491_107751686_107751753_107754770_107754860_107766006_107766043_107767687_107768622_107771567_107771663_107773753_107773835_107780928_107780998_107789819
transcript_72040.known	chr5	-	815	7	FSM	ENSMUSG00000029276.14	ENSMUST00000148505.8	815	7	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_3	84.0806491147372	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTACAGCTGATCTAAT	NA	False	NA	NA	False	NA	NA	NA	107745432	107720145	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_107720249_107721550_107721789_107723097_107723231_107726316_107726434_107741618_107741745_107744653_107744729_107745409
transcript_72043.known	chr5	+	1408	6	FSM	ENSMUSG00000111375.5	ENSMUST00000162298.4	1408	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	10.3266645147405	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTGTCTGCCAGACTGAT	NA	False	NA	NA	False	NA	NA	NA	107585862	107619505	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_107586012_107593728_107593924_107599854_107600052_107609303_107609422_107618573_107618664_107618846
transcript_72045.known	chr5	+	795	6	FSM	ENSMUSG00000089798.11	ENSMUST00000239050.2	795	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	1.2	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTTGGTTGAATGGTTCC	NA	False	NA	NA	False	ATTAAA	-16	NA	107682576	107696243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_107682675_107686995_107687090_107691785_107691880_107693553_107693723_107694066_107694146_107695982
transcript_7205.nic	chr10	+	2163	12	ISM	ENSMUSG00000038010.10	ENSMUST00000036576.10	2455	16	-54	34611	-54	-34611	5prime_fragment	FALSE	canonical	3	46	junction_9	6.71497647731614	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTGCACACTCCTTTA	889	False	NA	NA	False	NA	NA	NA	58333715	58377455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_58333885_58334990_58335036_58335183_58335242_58343342_58343464_58345326_58345455_58348900_58349080_58359959_58360119_58363163_58363284_58364144_58364223_58364726_58364835_58374070_58374233_58376619
transcript_72060.known	chr5	+	425	3	FSM	ENSMUSG00000033773.15	ENSMUST00000147284.8	425	3	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_1	8	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAACAGAACAGGTAAGTCA	NA	False	NA	NA	False	NA	NA	NA	107745586	107749835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_107745727_107746387_107746434_107749596
transcript_72061.known	chr5	+	4545	7	FSM	ENSMUSG00000111375.5	ENSMUST00000100951.9	4545	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	3.57848509226398	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGTACAGAATCAGTCTGTG	NA	False	NA	NA	False	AATAAA	-20	NA	107645243	107659073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_107645717_107647892_107647955_107651204_107651881_107652369_107652461_107652856_107652997_107654741_107656989_107658217
transcript_72062.known	chr5	-	1945	19	FSM	ENSMUSG00000029276.14	ENSMUST00000082121.9	1945	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	65.6557849603935	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTCATTATACTTTATA	NA	False	NA	NA	False	AATAAA	-16	NA	107745754	107696888	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_107697042_107697256_107697340_107698837_107698962_107705147_107705212_107705783_107705891_107706327_107706413_107708741_107708816_107708918_107708961_107709707_107709798_107710110_107710142_107710616_107710671_107717995_107718184_107720145_107720249_107721550_107721789_107723097_107723207_107726316_107726434_107741618_107741745_107744653_107744729_107745672
transcript_72063.known	chr5	-	2042	19	FSM	ENSMUSG00000029276.14	ENSMUST00000124546.8	2042	19	0	0	0	0	multi-exon	FALSE	canonical	2	35	junction_18	75.5102805526228	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTTCATTATACTTTAT	NA	False	NA	NA	False	AATAAA	-15	NA	107745410	107696889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_107697042_107697256_107697340_107698837_107698962_107705147_107705212_107705783_107705891_107706327_107706413_107708741_107708816_107708918_107708961_107709707_107709798_107710110_107710142_107710616_107710671_107717995_107718184_107720145_107720249_107721550_107721789_107723097_107723231_107726316_107726434_107741618_107741745_107744653_107744729_107745254
transcript_72064.known	chr5	-	1304	10	FSM	ENSMUSG00000011831.17	ENSMUST00000138111.8	1304	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	80.2539180228896	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTAATTTGTATGATCT	NA	False	NA	NA	False	AATACA	-20	NA	108022925	107963476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_107963575_107963667_107963758_107964639_107964784_107966754_107966881_107967469_107967545_107968297_107968523_107969570_107969761_107989936_107990167_108020466_108020522_108022854
transcript_72065.known	chr5	-	358	3	FSM	ENSMUSG00000011831.17	ENSMUST00000133411.2	358	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGACTTTGGTGGTATTA	NA	False	NA	NA	False	NA	NA	NA	108022922	107997935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_107998171_108020466_108020522_108022854
transcript_72071.known	chr5	+	2045	8	FSM	ENSMUSG00000058558.13	ENSMUST00000082223.13	2045	8	0	0	0	0	multi-exon	FALSE	canonical	3	7026	junction_3	385.215126750691	7026	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGTGGCATTCTTAATT	NA	False	NA	24	True	AATAAA	-18	NA	108048367	108056871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
transcript_72082.known	chr5	+	854	5	FSM	ENSMUSG00000058558.13	ENSMUST00000123183.8	854	5	0	0	0	0	multi-exon	FALSE	canonical	3	7026	junction_3	103.495168969378	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACATTTAGAGGCAAAAGC	NA	False	NA	NA	False	NA	NA	NA	108048437	108051989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531
transcript_72087.known	chr5	-	2721	5	FSM	ENSMUSG00000029270.11	ENSMUST00000031198.11	2721	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_2	18.0883249639097	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCTTGATCAATATGTTT	NA	False	NA	NA	False	NA	NA	NA	108134951	108055918	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_108058083_108059477_108059655_108062211_108062320_108072450_108072586_108134814
transcript_72093.known	chr5	-	884	4	FSM	ENSMUSG00000029270.11	ENSMUST00000145239.2	884	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	69.6291765154682	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTGAGTCTGACCTGGAC	NA	False	NA	NA	False	NA	NA	NA	108134899	108057568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_108058083_108059477_108059655_108062211_108062320_108134814
transcript_72096.nnic	chr5	+	1270	2	Antisense	novelGene_ENSMUSG00000096920.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	298	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAACAACAACAACAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	108203303	108294523	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr5_+_108203823_108293772
transcript_72099.nnic	chr5	+	1235	2	Antisense	novelGene_ENSMUSG00000096920.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	301	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAACAACAACAACAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	108203308	108294523	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr5_+_108203823_108293802
transcript_72101.known	chr5	-	422	1	FSM	ENSMUSG00000096920.2	ENSMUST00000180714.2	422	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAACGAATGCTGGGTTAA	NA	False	NA	NA	False	NA	NA	NA	108203782	108203360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_108203400_108203800
transcript_72120.known	chr5	+	3330	15	FSM	ENSMUSG00000029267.18	ENSMUST00000143412.8	3330	15	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	498.553709263514	769	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTAGCTCTTCATTTT	NA	False	NA	104	True	AGTAAA	-14	NA	108213607	108256136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_108213832_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
transcript_72149.known	chr5	-	3800	4	FSM	ENSMUSG00000063406.12	ENSMUST00000002837.11	3800	4	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_1	14.1656862405839	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATAATTGTTACCTACTCC	NA	False	NA	0	True	AATAAA	-31	NA	108280486	108269492	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_108272626_108273766_108273951_108277883_108277982_108280101
transcript_72154.known	chr5	-	482	3	FSM	ENSMUSG00000063406.12	ENSMUST00000117759.2	482	3	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	115.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGTGCAGCTGTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	108280399	108277332	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_108277419_108277883_108277982_108280101
transcript_72155.known	chr5	+	3068	16	FSM	ENSMUSG00000029267.18	ENSMUST00000141592.8	3068	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	689.521263873228	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTTTGGAGTATATATCC	NA	False	NA	NA	False	AATACA	-16	NA	108213581	108255490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_108213832_108217027_108217390_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
transcript_72156.known	chr5	+	4060	15	FSM	ENSMUSG00000029267.18	ENSMUST00000081567.11	4060	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	595.009556603068	1029	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	33	True	ATTAAA	-34	NA	108213607	108256870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_108213832_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
transcript_72157.known	chr5	+	1932	14	FSM	ENSMUSG00000029267.18	ENSMUST00000134026.8	1932	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	712.399038834658	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAACAAAAAACAG	NA	False	NA	28	True	NA	NA	NA	108213607	108254866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_108213832_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
transcript_72158.known	chr5	+	2355	17	FSM	ENSMUSG00000029267.18	ENSMUST00000131291.8	2355	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	685.769446953566	498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGAGAGACTTAATTTTT	NA	False	NA	-78	True	CATAAA	-22	NA	108213539	108255029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_108213832_108221172_108221321_108228690_108228708_108228787_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
transcript_72159.known	chr5	-	1045	3	FSM	ENSMUSG00000063406.12	ENSMUST00000118036.8	1045	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	117.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCACTGCCTTCCTTCATA	NA	False	NA	NA	False	AATAAA	-15	NA	108280431	108254231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_108254849_108277883_108277982_108280101
transcript_72160.known	chr5	+	1371	4	FSM	ENSMUSG00000056531.12	ENSMUST00000200463.2	1371	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	37.4788829431544	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAAACCCTCCGCAAGA	1175	False	NA	NA	False	NA	NA	NA	108280811	108287441	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_108281206_108283287_108283431_108283838_108284011_108286779
transcript_72164.known	chr5	+	3085	3	FSM	ENSMUSG00000029265.5	ENSMUST00000031190.5	3085	3	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_1	9	282	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTTTTATATTTAATGAT	NA	False	NA	NA	False	AATAAA	-21	NA	108416762	108428392	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_108417676_108423434_108423599_108426384
transcript_72165.known	chr5	+	4573	13	FSM	ENSMUSG00000029263.16	ENSMUST00000119014.8	4573	13	0	0	0	0	multi-exon	TRUE	canonical	3	51	junction_6	9.64761052742537	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAACTTTTGTCTGTTTTCT	NA	False	NA	NA	False	AATAAA	-25	NA	108460474	108497221	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_108460945_108461824_108462031_108465128_108465339_108466690_108466880_108467761_108467904_108474682_108474896_108479840_108480059_108480549_108480832_108483969_108484428_108486420_108486613_108489660_108489971_108492089_108492254_108495702
transcript_72173.known	chr5	-	371	4	FSM	ENSMUSG00000050856.17	ENSMUST00000049628.16	371	4	0	0	0	0	multi-exon	FALSE	canonical	3	3979	junction_1	506.673026275877	17935	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTCTCTCTTTACTGTTT	5502	False	NA	0	True	AATAAA	-24	NA	108582314	108581109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_108581204_108581596_108581696_108581891_108581947_108582191
transcript_72174.known	chr5	-	563	3	FSM	ENSMUSG00000050856.17	ENSMUST00000123184.2	563	3	0	0	0	0	multi-exon	FALSE	canonical	3	3979	junction_1	613.5	1063	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCTCTCTCTTTACTGT	5553	False	NA	-2	True	AATAAA	-22	NA	108582263	108581111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_108581204_108581596_108581696_108581891
transcript_72175.known	chr5	-	272	3	FSM	ENSMUSG00000050856.17	ENSMUST00000118632.2	272	3	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	2209	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTCTCTCTTTACTGTTT	5502	False	NA	0	True	AATAAA	-24	NA	108582314	108581109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_108581204_108581891_108581947_108582191
transcript_72176.known	chr5	-	2111	8	FSM	ENSMUSG00000029490.5	ENSMUST00000238510.2	2111	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.19522860933439	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAGACCTTATTCCTGCCT	NA	False	NA	NA	False	AATAAA	-21	NA	108596742	108588928	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_108590128_108590889_108591000_108591304_108591463_108591720_108591874_108592336_108592454_108592537_108592676_108593071_108593149_108596583
transcript_72179.known	chr5	+	7708	11	FSM	ENSMUSG00000033623.14	ENSMUST00000046975.12	7708	11	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_9	9.83666610188635	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTGGATTCCTCTGTGT	NA	False	NA	15	True	AATAAA	-21	NA	108609097	108654842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_108609318_108619937_108619978_108620242_108620384_108621654_108621773_108622975_108623073_108626168_108626225_108634005_108634114_108635701_108635791_108643699_108643838_108647492_108647574_108648222
transcript_72183.known	chr5	+	354	1	FSM	ENSMUSG00000060730.9	ENSMUST00000136334.2	354	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2290	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGCACATTTTTTAAGTA	NA	False	NA	NA	False	NA	NA	NA	108665044	108665398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_108665000_108665400
transcript_72184.known	chr5	-	2189	4	FSM	ENSMUSG00000033615.10	ENSMUST00000046892.10	2189	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	1.4142135623731	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTATTCCTTCCAAGACT	NA	False	NA	0	True	AATAAA	-19	NA	108697890	108666419	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_108668193_108673257_108673434_108696371_108696476_108697754
transcript_72185.known	chr5	-	4453	28	FSM	ENSMUSG00000062234.15	ENSMUST00000046603.15	4453	28	0	0	0	0	multi-exon	FALSE	canonical	3	318	junction_10	27.4864725426801	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTGGCTTGTAAAGCAC	NA	False	NA	-28	True	ATTAAA	-23	NA	108777605	108717279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108732097_108732245_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108764774_108764918_108771125_108771241_108772048_108772109_108772895_108772958_108777366
transcript_72189.known	chr5	+	3373	14	FSM	ENSMUSG00000033540.19	ENSMUST00000112563.9	3373	14	0	0	0	0	multi-exon	FALSE	canonical	2	36	junction_11	7.1294040681437	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGGCCTCCCAAGTCTTC	NA	False	NA	17	True	NA	NA	NA	108816971	108832423	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_108817384_108817984_108818126_108827364_108827451_108827569_108827678_108827976_108828073_108828160_108828364_108828436_108828617_108828726_108828944_108829245_108829459_108829537_108829660_108829767_108829894_108829965_108830043_108830918_108831020_108831132
transcript_72191.known	chr5	+	3956	11	FSM	ENSMUSG00000013495.16	ENSMUST00000063272.13	3956	11	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_10	21.559220765139	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCTTAGCCTTTCTCAG	NA	False	NA	NA	False	NA	NA	NA	108777697	108796648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_108777767_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422_108792559_108793704
transcript_72194.known	chr5	+	1811	11	FSM	ENSMUSG00000013495.16	ENSMUST00000120327.3	1811	11	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	36.4367945900843	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGCAGTGAAGGGTTTCA	NA	False	NA	21	True	NA	NA	NA	108777874	108794537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_108777910_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422_108792559_108793704
transcript_72196.known	chr5	+	2374	11	FSM	ENSMUSG00000013495.16	ENSMUST00000078323.13	2374	11	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_1	41.0677489034887	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCTTTTGAACATTGAAAA	NA	False	NA	NA	False	AATAAA	-25	NA	108777867	108795129	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_108777910_108786138_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422_108792559_108793704
transcript_72198.nnic	chr5	+	1619	10	NNC	ENSMUSG00000013495.16	novel	3956	11	NA	NA	11	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	42.7172732287393	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTAGATTTTGCATCTGA	NA	False	NA	8	True	ATTAAA	-16	NA	108777646	108792962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_108777767_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792270
transcript_72199.nic	chr5	+	1467	10	ISM	ENSMUSG00000013495.16	ENSMUST00000063272.13	3956	11	-51	3686	11	-20	5prime_fragment	FALSE	canonical	3	99	junction_1	13.0251418797514	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTAGATTTTGCATCTGA	NA	False	NA	8	True	ATTAAA	-16	NA	108777646	108792962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_108777767_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422
transcript_72203.nic	chr5	+	1582	10	ISM	ENSMUSG00000013495.16	ENSMUST00000120327.3	1811	11	-200	1575	-23	-20	5prime_fragment	FALSE	canonical	3	25	junction_1	34.906223577529	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTAGATTTTGCATCTGA	NA	False	NA	8	True	ATTAAA	-16	NA	108777674	108792962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_108777910_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422
transcript_72207.known	chr5	+	1686	8	FSM	ENSMUSG00000013495.16	ENSMUST00000146207.6	1686	8	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	14.7149791792207	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAGACAGTTCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	108777635	108791896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_108777767_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904
transcript_72215.known	chr5	-	924	12	FSM	ENSMUSG00000055385.13	ENSMUST00000212212.2	924	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.603022689155527	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATCACGGTAGAGTTCACT	NA	False	NA	NA	False	NA	NA	NA	108922848	108877230	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_108877344_108877679_108877844_108879530_108879604_108893526_108893591_108895280_108895324_108897108_108897161_108897262_108897316_108903689_108903749_108904928_108904986_108907876_108907952_108918416_108918479_108922739
transcript_72218.nnic	chr5	+	794	5	Intergenic	novelGene_108	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_2	7.58287544405155	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTAAGTTCTTCCAGTTC	NA	False	NA	NA	False	NA	NA	NA	109614921	109625372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr5_+_109615053_109618707_109618865_109624129_109624257_109624444_109624506_109625054
transcript_72220.nnic	chr5	+	2707	4	Intergenic	novelGene_106	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	6.94422221866655	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGGTATT	NA	False	NA	NA	False	NA	NA	NA	109614915	109627436	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr5_+_109615053_109624129_109624257_109624444_109624506_109625054
transcript_72222.nnic	chr5	+	624	4	Intergenic	novelGene_107	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_2	8.52447456836295	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGTATCTGATTTGTGT	NA	False	NA	NA	False	NA	NA	NA	109614921	109624653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr5_+_109615053_109618707_109618865_109624129_109624257_109624444
transcript_72223.nnic	chr5	+	473	3	Intergenic	novelGene_105	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	8.5	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGTATCTGATTTGTGT	NA	False	NA	NA	False	NA	NA	NA	109614915	109624653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr5_+_109615053_109624129_109624257_109624444
transcript_7223.nic	chr10	+	885	4	NIC	ENSMUSG00000038010.10	novel	2455	16	NA	NA	-54	-1563	combination_of_known_junctions	FALSE	canonical	2	3	junction_3	29.5108266385218	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTCTTGGTCATG	889	False	NA	NA	False	NA	NA	NA	58333715	58336631	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_+_58333885_58334990_58335036_58335183_58335242_58336018
transcript_72232.nnic	chr5	-	691	5	NNC	ENSMUSG00000106028.2	novel	489	6	NA	NA	886	1621	intron_retention	FALSE	canonical	1	1	junction_3	24.8432586429397	96	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCCCGGGACACGCAGTA	NA	False	NA	NA	False	AATAAA	-19	NA	109701136	109698136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_109698395_109699328_109699371_109699667_109699783_109700490_109700560_109700929
transcript_72241.nnic	chr5	-	769	4	Genic_Genomic	ENSMUSG00000106028.2	novel	489	6	NA	NA	693	1621	multi-exon	FALSE	canonical	3	31	junction_2	12.2292908852294	113	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCCCGGGACACGCAGTA	NA	False	NA	NA	False	AATAAA	-19	NA	109701329	109698136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr5_-_109698395_109699328_109699371_109700490_109700560_109700929
transcript_72246.nnic	chr5	-	634	4	Genic_Genomic	ENSMUSG00000106028.2	novel	489	6	NA	NA	876	1621	multi-exon	FALSE	canonical	3	14	junction_1	15.542057635833	36	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCCCGGGACACGCAGTA	NA	False	NA	NA	False	AATAAA	-19	NA	109701146	109698136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr5_-_109698443_109699328_109699371_109700490_109700560_109700929
transcript_7225.nic	chr10	+	1543	4	NIC	ENSMUSG00000038010.10	novel	2455	16	NA	NA	-54	-905	combination_of_known_junctions	FALSE	canonical	2	3	junction_3	29.5108266385218	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	889	False	NA	NA	False	NA	NA	NA	58333715	58337289	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_+_58333885_58334990_58335036_58335183_58335242_58336018
transcript_72257.known	chr5	-	1323	8	FSM	ENSMUSG00000033467.13	ENSMUST00000044579.12	1323	8	0	0	0	0	multi-exon	FALSE	canonical	1	25	junction_7	229.794229159703	1498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATGCGGCCAGCCATCAT	NA	False	NA	-11	True	NA	NA	NA	109706859	109702578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_109702937_109703138_109703224_109703372_109703494_109703884_109704048_109704285_109704429_109704866_109705034_109705383_109705481_109706670
transcript_72259.known	chr5	-	1405	8	FSM	ENSMUSG00000033467.13	ENSMUST00000200284.5	1405	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_7	232.416937104552	3496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGGCCAGCCATCATTAAT	NA	False	NA	-7	True	NA	NA	NA	109706802	109702574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_109702937_109703138_109703224_109703372_109703494_109703884_109704048_109704285_109704429_109704866_109705034_109705383_109705616_109706670
transcript_7226.known	chr10	+	2750	4	FSM	ENSMUSG00000038010.10	ENSMUST00000217992.2	2750	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	29.6910012555245	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTTGTCTTTGGTCACCA	1200	False	NA	NA	False	NA	NA	NA	58334026	58338194	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_58334498_58334990_58335036_58335183_58335242_58336018
transcript_72271.known	chr5	-	812	5	FSM	ENSMUSG00000033467.13	ENSMUST00000198960.2	812	5	0	0	0	0	multi-exon	FALSE	canonical	1	13	junction_3	269.602021505774	823	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTAATGCGGCCAGCCATC	NA	False	NA	-13	True	NA	NA	NA	109704339	109702580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_109702937_109703138_109703224_109703372_109703527_109703884_109704048_109704285
transcript_72272.nnic	chr5	-	635	5	NNC	ENSMUSG00000072763.3	novel	3341	4	NA	NA	196	33624	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	32.5605205732341	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCCCTTGGCTAGCATGA	6327	False	NA	NA	False	AATAAA	-30	NA	109838711	109788786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_109789040_109825173_109825258_109826379_109826441_109826628_109826756_109838601
transcript_72273.known	chr5	-	3341	4	FSM	ENSMUSG00000072763.3	ENSMUST00000092720.4	3341	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	21.5148527508066	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCCATGGTCATGGTATC	6131	False	NA	-3	True	NA	NA	NA	109838907	109822410	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_109825258_109826379_109826441_109826628_109826756_109838601
transcript_72274.nic	chr5	-	460	3	ISM	ENSMUSG00000072763.3	ENSMUST00000092720.4	3341	4	185	3818	185	-3818	5prime_fragment	FALSE	canonical	3	55	junction_1	18.5	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGGTGTCTGATTTGTA	6316	False	NA	NA	False	NA	NA	NA	109838722	109826228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_109826441_109826628_109826756_109838601
transcript_72277.nnic	chr5	-	616	3	Fusion	ENSMUSG00000072762.10_ENSMUSG00000105471.2	novel	599	3	NA	NA	-161	32	multi-exon	FALSE	canonical	3	100	junction_2	13	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAATGTCAGGTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	109944325	109886664	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr5_-_109886877_109933207_109933335_109944048
transcript_72279.known	chr5	-	599	3	FSM	ENSMUSG00000072762.10	ENSMUST00000100937.4	599	3	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_2	15.5	774	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTTGATTAAATTCTCA	7657	False	NA	NA	False	NA	NA	NA	109899752	109886696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_109886877_109887064_109887192_109899460
transcript_7228.known	chr10	-	1821	10	FSM	ENSMUSG00000019917.11	ENSMUST00000220156.2	1821	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	16.7582668009803	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATATTTTGCTCTTTCATG	NA	False	NA	NA	False	NA	NA	NA	59057669	58977448	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_58977563_59002325_59002514_59006635_59006769_59012669_59012839_59014582_59014680_59016841_59017004_59019346_59019534_59027987_59028184_59028519_59028638_59057212
transcript_72280.nnic	chr5	-	2202	4	NNC	ENSMUSG00000105471.2	novel	665	2	NA	NA	-179	-12822	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_1	67.6214955961983	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGGTCTTGGTATTTTTT	NA	False	NA	1	True	NA	NA	NA	109944343	109930094	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_109931814_109932961_109933023_109933207_109933335_109944048
transcript_72281.nnic	chr5	-	1123	3	NNC	ENSMUSG00000105471.2	novel	665	2	NA	NA	-27	582	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTTCTATTTCTATTTT	NA	False	NA	NA	False	NA	NA	NA	109944191	109916690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_109917112_109917262_109917822_109944048
transcript_72283.known	chr5	-	665	2	FSM	ENSMUSG00000105471.2	ENSMUST00000196262.2	665	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	109944164	109917272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_109917822_109944048
transcript_72285.nnic	chr5	-	3939	4	Genic_Genomic	ENSMUSG00000105044.2	novel	645	1	NA	NA	-10937	1501	multi-exon	FALSE	canonical	3	110	junction_1	60.4997704311531	35	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCTCAACAATTAATTTTG	NA	False	NA	3	True	NA	NA	NA	109992948	109979865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr5_-_109983468_109984614_109984676_109984863_109984991_109992799
transcript_72287.nnic	chr5	-	847	3	Intergenic	novelGene_109	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCATGTAATAAATTCTTTT	NA	False	NA	NA	False	TATAAA	-10	NA	109992956	109953918	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr5_-_109954548_109956449_109956511_109992799
transcript_7229.known	chr10	-	2532	10	FSM	ENSMUSG00000019917.11	ENSMUST00000165971.3	2532	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	10.8639169436269	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATCTATGTATTTCCTAA	NA	False	NA	-29	True	AATAAA	-15	NA	59057669	58999941	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_59000767_59002325_59002514_59006635_59006769_59012669_59012839_59014582_59014680_59016841_59017004_59019346_59019534_59027987_59028184_59028519_59028638_59057212
transcript_72293.nnic	chr5	+	744	6	NNC	ENSMUSG00000090015.9	novel	2417	4	NA	NA	222	722	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	79.9714949216282	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAACCTTACAAATGTGA	NA	False	NA	NA	False	NA	NA	NA	110071487	110090298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_110071633_110076627_110076764_110088291_110088419_110088605_110088667_110089940_110090072_110090154
transcript_72302.known	chr5	+	2417	4	FSM	ENSMUSG00000090015.9	ENSMUST00000112544.8	2417	4	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	50.6315667894601	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGCTATC	NA	False	NA	NA	False	NA	NA	NA	110071265	110091802	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_110071633_110088291_110088419_110088605_110088667_110089940
transcript_72303.known	chr5	-	589	2	FSM	ENSMUSG00000097863.2	ENSMUST00000181488.2	589	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATCCAACCGTGTTGTG	NA	False	NA	NA	False	NA	NA	NA	110144264	110143376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_110143686_110143984
transcript_72308.known	chr5	+	868	5	FSM	ENSMUSG00000066613.15	ENSMUST00000125213.8	868	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	94.3514043350707	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTAGGTCAGAATGATCT	8381	False	NA	NA	False	NA	NA	NA	110144397	110156975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_110144500_110151218_110151319_110154809_110154937_110155121_110155183_110156497
transcript_72314.known	chr5	+	451	3	FSM	ENSMUSG00000066613.15	ENSMUST00000099484.9	451	3	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_1	18.5	764	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCCAGGTGTCTGATT	8371	False	NA	NA	False	NA	NA	NA	110144387	110155333	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_110144500_110154809_110154937_110155121
transcript_72315.known	chr5	+	749	4	FSM	ENSMUSG00000066613.15	ENSMUST00000143639.8	749	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	90.6421535489973	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCCTTTGTAGGTCAGAA	8391	False	NA	NA	False	NA	NA	NA	110144407	110156969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_110144497_110154809_110154937_110155121_110155183_110156497
transcript_72318.nnic	chr5	-	516	4	NNC	ENSMUSG00000090963.3	novel	1776	4	NA	NA	-11582	11909	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9.89949493661167	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTTGTCTTAGCTCCGTT	NA	False	NA	NA	False	NA	NA	NA	110205934	110182095	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_110182284_110196887_110196949_110197131_110197259_110205794
transcript_72319.nnic	chr5	-	2474	4	NNC	ENSMUSG00000090963.3	novel	1776	4	NA	NA	-11582	600	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	6.94422221866655	20	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTCTTGGTCATGGTGTC	NA	False	NA	NA	False	NA	NA	NA	110205934	110193404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_110195551_110196887_110196949_110197131_110197259_110205794
transcript_72321.nnic	chr5	-	3561	5	NNC	ENSMUSG00000109771.2	novel	3523	4	NA	NA	-5495	1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	25.4202183310844	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAAAGTGTTCCTTTTTCT	NA	False	NA	-2	True	AATAAA	-15	NA	110234249	110224000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_110226087_110226171_110227247_110228349_110228411_110228603_110228731_110234037
transcript_72330.nic	chr5	-	470	3	ISM	ENSMUSG00000109771.2	ENSMUST00000210052.2	3523	4	-42	4198	-42	-1060	5prime_fragment	FALSE	canonical	3	35	junction_2	13	64	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGGTGTCTGAATTGTG	NA	False	NA	NA	False	NA	NA	NA	110242328	110228199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_110228411_110228603_110228731_110242196
transcript_72334.nic	chr5	-	1391	10	NIC	ENSMUSG00000033434.16	novel	1617	10	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	76.178315828516	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCTGGTTTTGTATAGGT	NA	False	NA	-4	True	ATTAAA	-28	NA	110255326	110251840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254650_110254735_110254807_110254925_110255064_110255210
transcript_72335.nic	chr5	-	1494	10	NIC	ENSMUSG00000033434.16	novel	1617	10	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	76.178315828516	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCTGGTTTTGTATAGGT	NA	False	NA	-4	True	ATTAAA	-28	NA	110255596	110251840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254650_110254735_110254807_110254925_110255064_110255377
transcript_72347.nnic	chr5	-	1439	8	NIC	ENSMUSG00000033434.16	novel	1617	10	NA	NA	-31	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_7	80.7902297588625	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCTGGTTTTGTATAGGT	NA	False	NA	-4	True	ATTAAA	-28	NA	110256094	110251840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254650_110255721
transcript_72353.known	chr5	-	1617	10	FSM	ENSMUSG00000033434.16	ENSMUST00000077220.14	1617	10	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_7	48.631900316511	522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCTGGTTTTGTATAGGT	NA	False	NA	-4	True	ATTAAA	-28	NA	110256063	110251840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254650_110254735_110254807_110254925_110255064_110255721
transcript_72357.known	chr5	+	3158	5	FSM	ENSMUSG00000023284.16	ENSMUST00000112528.8	3158	5	0	0	0	0	multi-exon	TRUE	canonical	3	28	junction_1	12.7744862910412	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGTATTTGTGAAGATGT	1949	False	NA	NA	False	NA	NA	NA	110257957	110277660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_110258184_110259762_110259933_110271625_110271747_110272218_110272312_110275112
transcript_72359.known	chr5	+	748	5	FSM	ENSMUSG00000023284.16	ENSMUST00000147631.8	748	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	18.0052075800308	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTCCTTTAAATTTTT	2208	False	NA	NA	False	NA	NA	NA	110258216	110275284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_110258409_110259762_110259933_110271625_110271747_110272218_110272312_110275112
transcript_7236.known	chr10	+	4043	15	FSM	ENSMUSG00000019916.15	ENSMUST00000009789.15	4043	15	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_8	56.7996838163088	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCTATGTACAACTGTTT	NA	False	NA	NA	False	AATACA	-40	NA	59159117	59209126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_59159299_59172875_59172979_59175117_59175215_59178505_59178658_59179478_59179617_59184002_59184243_59186225_59186423_59187904_59188082_59190161_59190233_59197682_59197783_59201110_59201165_59203110_59203177_59205062_59205132_59205408_59205506_59206825
transcript_72363.known	chr5	+	3201	19	FSM	ENSMUSG00000014668.16	ENSMUST00000198066.5	3201	19	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	86.3223931292197	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTGTGTTGTACTCCTG	NA	False	NA	19	True	AATAAA	-19	NA	110283743	110319835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_110283801_110283916_110284061_110287982_110288056_110288219_110288320_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306664_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
transcript_72364.known	chr5	+	3146	18	FSM	ENSMUSG00000014668.16	ENSMUST00000014812.13	3146	18	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_11	67.7699140155478	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTTGTACTCCTGTGC	NA	False	NA	22	True	AATAAA	-22	NA	110283725	110319838	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_110283801_110283916_110284061_110288219_110288320_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306667_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
transcript_72366.known	chr5	+	2623	17	FSM	ENSMUSG00000014668.16	ENSMUST00000198633.5	2623	17	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_5	84.7737568104068	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCCCTGCTGAAACTCCA	NA	False	NA	NA	False	NA	NA	NA	110283722	110319525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_110283801_110283916_110284061_110288219_110288320_110291416_110291527_110292456_110292517_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306664_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
transcript_7237.known	chr10	+	2918	15	FSM	ENSMUSG00000019916.15	ENSMUST00000105466.3	2918	15	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_7	20.6288880070682	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACGGGGCTCCGGCTCATT	NA	False	NA	NA	False	NA	NA	NA	59159189	59208073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_59159299_59172875_59172979_59175117_59175215_59178505_59178658_59179478_59179617_59184002_59184243_59186225_59186423_59187904_59188082_59191171_59191243_59197682_59197783_59201110_59201165_59203110_59203177_59205062_59205132_59205408_59205506_59206825
transcript_72371.nic	chr5	+	1168	8	ISM	ENSMUSG00000014668.16	ENSMUST00000197010.5	2135	16	-46	16623	-28	5231	5prime_fragment	FALSE	canonical	3	248	junction_2	41.954786158824	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCCTTGGCGTCTGCTCA	NA	False	NA	NA	False	AATAAA	-17	NA	110283679	110299644	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_110283801_110283916_110284061_110288219_110288320_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294501_110299392
transcript_72375.known	chr5	-	1250	3	FSM	ENSMUSG00000086247.8	ENSMUST00000130892.8	1250	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTACCACATGTGTAGTC	NA	False	NA	NA	False	AATAAA	-25	NA	110324370	110315373	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_110316351_110318128_110318214_110324182
transcript_72377.known	chr5	+	8132	24	FSM	ENSMUSG00000029502.15	ENSMUST00000112512.8	8132	24	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_3	20.4320997313759	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTTCATAATTCATTGGG	NA	False	NA	NA	False	AATAAA	-15	NA	110324566	110374336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_110324789_110329468_110329780_110332203_110332354_110333651_110333765_110335206_110335854_110336528_110336641_110337471_110337779_110340772_110340976_110341484_110341623_110349696_110349859_110350434_110350804_110351585_110351664_110352645_110352910_110353642_110353738_110355421_110355639_110356305_110356450_110357640_110357839_110360096_110360214_110364699_110364840_110365676_110365810_110365959_110366083_110368647_110368810_110369489_110369654_110370773
transcript_72380.known	chr5	-	2098	6	FSM	ENSMUSG00000029500.17	ENSMUST00000112505.9	2098	6	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_2	153.77594090104	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTGTTTAGAAACCCTTT	NA	False	NA	5	True	AATAAA	-43	NA	110417779	110406995	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_110408304_110413377_110413512_110413605_110413695_110413776_110413903_110414952_110415132_110417517
transcript_72381.known	chr5	-	2044	6	FSM	ENSMUSG00000029500.17	ENSMUST00000059229.16	2044	6	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_2	111.169420255752	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTATTTGTTTTAAAGGG	NA	False	NA	-20	True	AATAAA	-18	NA	110417753	110407020	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_110408304_110413377_110413509_110413605_110413695_110413776_110413903_110414952_110415132_110417517
transcript_72382.known	chr5	-	1041	5	FSM	ENSMUSG00000029499.12	ENSMUST00000031472.12	1041	5	0	0	0	0	multi-exon	FALSE	canonical	3	476	junction_4	29.6004645233821	2901	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTTTCTCAGCACAGTT	NA	False	NA	4	True	AATAAA	-28	NA	110434052	110422147	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_110422495_110425520_110425641_110429062_110429226_110431511_110431620_110433749
transcript_72383.known	chr5	-	700	4	FSM	ENSMUSG00000029499.12	ENSMUST00000155266.2	700	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	226.6686274425	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTAATGGGTGTGGTT	NA	False	NA	-9	True	AATAAA	-15	NA	110433887	110422160	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_110422495_110425520_110425641_110431511_110431620_110433749
transcript_72385.known	chr5	+	747	6	FSM	ENSMUSG00000007080.15	ENSMUST00000112482.2	747	6	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_5	26.0967430918113	802	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGTGTTCTGTTTTGTGC	NA	False	NA	9	True	AATAAA	-15	NA	110434206	110439101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_110434316_110437098_110437241_110437647_110437729_110438091_110438137_110438270_110438364_110438824
transcript_72386.known	chr5	+	7163	49	FSM	ENSMUSG00000007080.15	ENSMUST00000007296.12	7163	49	0	0	0	0	multi-exon	FALSE	canonical	2	122	junction_13	49.0675377809901	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTTCTGCCTCTCGTCTG	NA	False	NA	48	True	AGTAAA	-39	NA	110434171	110485340	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_110434316_110437098_110437241_110437647_110437729_110438091_110438137_110438270_110438364_110438824_110438980_110441125_110441268_110441580_110441662_110442374_110442483_110442757_110442869_110443093_110443180_110443383_110443504_110444871_110445005_110445213_110445328_110445598_110445812_110446106_110446215_110446757_110446887_110446965_110447069_110447154_110447302_110447638_110447785_110449873_110450023_110451440_110451534_110451720_110451866_110454192_110454351_110454632_110454829_110456801_110457017_110459872_110459976_110460599_110460681_110460771_110460895_110465655_110465866_110466091_110466302_110466481_110466626_110471403_110471545_110471795_110471950_110472025_110472133_110472286_110472464_110472545_110472770_110472949_110473171_110473377_110473583_110475567_110475742_110477411_110477538_110478794_110478937_110480247_110480426_110482026_110482159_110482288_110482483_110483705_110483907_110484239_110484366_110484823_110484914_110484997
transcript_72387.known	chr5	-	1568	11	FSM	ENSMUSG00000029503.17	ENSMUST00000200214.2	1568	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	2.0976176963403	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAACTCCTCATAGGATCC	NA	False	NA	NA	False	NA	NA	NA	110491015	110487835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_110488449_110488533_110488600_110488721_110488816_110488966_110489098_110489416_110489556_110489639_110489721_110489870_110489968_110490043_110490120_110490198_110490271_110490365_110490502_110490952
transcript_72394.known	chr5	+	764	6	FSM	ENSMUSG00000072754.10	ENSMUST00000185691.7	764	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	10.5375518978556	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATCTGGGGGAAAAAAATCA	NA	False	NA	NA	False	NA	NA	NA	110492595	110503887	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_110492696_110500919_110501037_110502033_110502160_110502356_110502483_110502590_110502717_110503718
transcript_72397.known	chr5	+	545	4	FSM	ENSMUSG00000072754.10	ENSMUST00000190963.2	545	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	12.2565175405668	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATCACAGGATTGCT	NA	False	NA	NA	False	NA	NA	NA	110502023	110503897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_110502160_110502378_110502483_110502590_110502717_110503718
transcript_72399.known	chr5	+	692	4	FSM	ENSMUSG00000072754.10	ENSMUST00000100924.5	692	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	4.71404520791032	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGTCCAGTCCATGTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	110501961	110503960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_110502160_110502356_110502483_110502590_110502717_110503718
transcript_7240.known	chr10	+	2387	14	FSM	ENSMUSG00000019916.15	ENSMUST00000092512.11	2387	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	50.4085087210412	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGTCTCTGTGTGGTAT	NA	False	NA	18	True	NA	NA	NA	59159185	59207778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_59159299_59172875_59172979_59175117_59175215_59178505_59178658_59179478_59179617_59186225_59186423_59187904_59188082_59191171_59191243_59197682_59197783_59201110_59201165_59203110_59203177_59205062_59205132_59205408_59205506_59206825
transcript_72402.known	chr5	-	2075	15	FSM	ENSMUSG00000033294.12	ENSMUST00000042147.6	2075	15	0	0	0	0	multi-exon	FALSE	canonical	3	589	junction_9	55.5126847059778	658	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCTGGCTAAATGTTTTT	8841	False	NA	NA	False	NA	NA	NA	110801283	110796283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_110796850_110796931_110797046_110797197_110797281_110797398_110797560_110797669_110797781_110797937_110797999_110798200_110798313_110798399_110798451_110798810_110798846_110798977_110799078_110799177_110799328_110799544_110799653_110800178_110800286_110800876_110800998_110801088
transcript_72403.known	chr5	+	4846	15	FSM	ENSMUSG00000029504.6	ENSMUST00000031478.6	4846	15	0	0	0	0	multi-exon	TRUE	canonical	3	94	junction_7	18.2382195693885	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTACCCTGTGCTC	NA	False	NA	NA	False	NA	NA	NA	110801316	110808362	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_110801655_110801743_110801878_110802333_110802485_110802734_110802881_110802957_110803030_110803172_110803280_110803430_110803540_110803625_110803772_110803905_110804099_110804196_110804313_110804390_110804508_110804681_110804784_110804953_110805018_110805116_110805252_110805446
transcript_72409.known	chr5	+	1607	1	FSM	ENSMUSG00000105161.2	ENSMUST00000196771.2	1607	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATATAATTCTTGGACATC	678	False	NA	NA	False	TATAAA	-31	NA	110809257	110810864	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_110809300_110810900
transcript_72413.known	chr5	-	3673	5	FSM	ENSMUSG00000029505.18	ENSMUST00000146458.9	3673	5	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_3	2.77263412660235	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAATAAAATAAAACG	NA	False	NA	NA	False	NA	NA	NA	110918451	110885537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_110887548_110888047_110888156_110889835_110889927_110903262_110904633_110918357
transcript_72414.known	chr5	-	1868	7	FSM	ENSMUSG00000029507.17	ENSMUST00000086643.12	1868	7	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_4	212.004454879818	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGCCTATTTTCCTTT	NA	False	NA	1	True	ATTAAA	-22	NA	110928462	110921532	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110924419_110924474_110925479_110925618_110927552_110927764_110928105
transcript_72415.nic	chr5	-	1605	7	NIC	ENSMUSG00000029507.17	novel	1868	7	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_4	232.058481613771	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTTTGCCTATTTTCCTT	NA	False	NA	0	True	ATTAAA	-21	NA	110928522	110921533	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_110921846_110922387_110923080_110923401_110923505_110924419_110924474_110925479_110925618_110927552_110927764_110928427
transcript_72419.known	chr5	-	1814	6	FSM	ENSMUSG00000029507.17	ENSMUST00000031483.15	1814	6	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_5	100.055184773204	720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGCCTATTTTCCTTT	NA	False	NA	1	True	ATTAAA	-22	NA	110928462	110921532	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110925479_110925618_110927552_110927764_110928105
transcript_7242.nnic	chr10	+	1100	2	Genic_Genomic	ENSMUSG00000069622.6	novel	630	1	NA	NA	-138	385	multi-exon	FALSE	canonical	0	0	junction_1	0	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTTTATTGATACAAAGTT	1364	False	NA	NA	False	NA	NA	NA	59231438	59232591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr10_+_59231689_59231741
transcript_72420.known	chr5	-	1510	6	FSM	ENSMUSG00000029507.17	ENSMUST00000170468.8	1510	6	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_5	177.715052823333	716	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTTTGCCTATTTTCCTT	NA	False	NA	0	True	ATTAAA	-21	NA	110928481	110921533	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110925479_110925618_110927552_110927764_110928427
transcript_72421.nnic	chr5	-	1544	6	NNC	ENSMUSG00000029507.17	novel	1510	6	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_5	205.782020594609	475	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTTTGCCTATTTTCCTT	NA	False	NA	0	True	ATTAAA	-21	NA	110928541	110921533	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_110921846_110922387_110923080_110923401_110923505_110925479_110925618_110927552_110927764_110928453
transcript_72428.known	chr5	-	5213	28	FSM	ENSMUSG00000029512.12	ENSMUST00000031490.11	5213	28	0	0	0	0	multi-exon	TRUE	canonical	3	530	junction_12	186.450389110485	186	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGGTGTCAATTTCATCC	NA	False	NA	-2	True	AATAAA	-15	NA	110957963	110932353	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_110934094_110934165_110934302_110934949_110935108_110935439_110935559_110935638_110935812_110935975_110936167_110936594_110936739_110936813_110936924_110937207_110937402_110938077_110938347_110938715_110938803_110938917_110939064_110939466_110939593_110939967_110940058_110940262_110940324_110940831_110940980_110941680_110941770_110942058_110942110_110942450_110942534_110942612_110942672_110943597_110943700_110944021_110944096_110944192_110944367_110946747_110946785_110946989_110947023_110956870_110956913_110956992_110957086_110957479
transcript_7243.known	chr10	+	1091	4	FSM	ENSMUSG00000009646.14	ENSMUST00000009790.14	1091	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	0.471404520791032	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAGATGAATGAATTCCAT	9407	False	NA	NA	False	AATAAA	-24	NA	59239481	59257798	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_59239804_59246798_59246888_59252169_59252336_59257284
transcript_72431.known	chr5	-	804	6	FSM	ENSMUSG00000043510.13	ENSMUST00000056937.12	804	6	0	0	0	0	multi-exon	FALSE	canonical	3	311	junction_3	42.8691030930203	2033	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTAATTGGAAATAGATAT	NA	False	NA	3	True	AATAAA	-24	NA	110987643	110976935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_110977078_110978801_110978850_110982520_110982666_110983845_110983936_110984172_110984270_110987361
transcript_72436.known	chr5	-	452	5	FSM	ENSMUSG00000043510.13	ENSMUST00000145318.2	452	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	168.71481114591	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGGCTTCTGCTAATTGG	NA	False	NA	-7	True	AATAAA	-14	NA	110987441	110976945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_110977078_110978801_110978850_110983840_110983936_110984172_110984270_110987361
transcript_72437.nic	chr5	-	643	3	ISM	ENSMUSG00000043510.13	ENSMUST00000056937.12	804	6	-46	6782	-46	-6771	5prime_fragment	FALSE	canonical	3	372	junction_2	33.5	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTGTTCTTTGTAAATCC	NA	False	NA	NA	False	TTTAAA	-18	NA	110987689	110983717	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_110983936_110984172_110984270_110987361
transcript_7244.nnic	chr10	+	904	4	NNC	ENSMUSG00000009646.14	novel	804	3	NA	NA	-845	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0.942809041582063	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAGATGAATGAATTCCAT	NA	False	NA	NA	False	AATAAA	-24	NA	59246003	59257798	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_59246139_59246798_59246888_59252169_59252336_59257284
transcript_72448.nic	chr5	+	2450	16	NIC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	67.6591457232502	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGTTTGTTGTGGCTTTTC	9155	False	NA	31	True	AAAACA	-7	NA	110987821	111022011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_110987915_110988276_110988407_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873_111015960_111019892_111019974_111021345
transcript_72450.known	chr5	+	2276	15	FSM	ENSMUSG00000029521.8	ENSMUST00000066160.3	2276	15	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_1	48.9833895211386	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGTTTGTTGTGGCTTTTC	9199	False	NA	31	True	AAAACA	-7	NA	110987865	111022011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873_111015960_111019892_111019974_111021345
transcript_72455.nnic	chr5	+	2212	14	NIC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	-31	0	combination_of_known_splicesites	TRUE	canonical	3	52	junction_11	68.5178679240099	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGTTTGTTGTGGCTTTTC	9147	False	NA	31	True	AAAACA	-7	NA	110987813	111022011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111015873_111015960_111019892_111019974_111021345
transcript_72458.nic	chr5	+	1107	6	NIC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	-23	-25	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	110.44202098839	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAGTGTTGGGATAAGCG	9155	False	NA	NA	False	AATAAA	-18	NA	110987821	110997734	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_110987915_110988276_110988407_110989071_110989410_110996254_110996380_110996495_110996644_110997461
transcript_72460.nic	chr5	+	985	5	ISM	ENSMUSG00000029521.8	ENSMUST00000066160.3	2276	15	-52	24277	-31	-25	5prime_fragment	FALSE	canonical	3	120	junction_1	80.3632378640881	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAGTGTTGGGATAAGCG	9147	False	NA	NA	False	AATAAA	-18	NA	110987813	110997734	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_110997461
transcript_72463.nic	chr5	+	731	4	ISM	ENSMUSG00000029521.8	ENSMUST00000199937.5	2190	14	-35	25337	-31	-1097	5prime_fragment	FALSE	canonical	3	120	junction_1	91.2249965744039	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCTTTTCTTAACTTCCT	9147	False	NA	NA	False	AATAAA	-21	NA	110987813	110996662	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495
transcript_72466.known	chr5	+	2190	14	FSM	ENSMUSG00000029521.8	ENSMUST00000199937.5	2190	14	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	77.8046408010314	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAATGTTAGTAGTTTG	9182	False	NA	19	True	NA	NA	NA	110987848	111021999	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873_111015960_111019892_111019974_111021345
transcript_72467.known	chr5	+	634	4	FSM	ENSMUSG00000029521.8	ENSMUST00000200630.2	634	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	147.790392109907	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGGCTTGGTTTCTCTGA	NA	False	NA	NA	False	AATAAA	-43	NA	110989319	110997759	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_110989410_110996254_110996380_110996495_110996644_110997488
transcript_72468.known	chr5	+	328	3	FSM	ENSMUSG00000029521.8	ENSMUST00000200172.2	328	3	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_1	11	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCACAGTATCAGGGTTCG	9178	False	NA	NA	False	NA	NA	NA	110987844	110989199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_110987915_110988276_110988407_110989071
transcript_72469.nnic	chr5	+	676	3	NNC	ENSMUSG00000033209.18	novel	10780	24	NA	NA	-1116	29571	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4.5	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGATTGTGGCTTTTAGAT	NA	False	NA	NA	False	AATAAA	-24	NA	111026552	111091753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_111026683_111040697_111040977_111091486
transcript_7247.known	chr10	+	2442	12	FSM	ENSMUSG00000020111.16	ENSMUST00000165563.8	2442	12	0	0	0	0	multi-exon	FALSE	canonical	2	105	junction_7	32.1836157690049	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCTCTGTGTCCTTTCTTT	NA	False	NA	27	True	NA	NA	NA	59538298	59699954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_59538510_59563778_59563941_59568804_59568980_59576481_59576645_59586325_59586370_59603959_59604075_59623762_59623846_59624700_59624899_59663010_59663149_59675496_59675606_59697384_59697475_59699000
transcript_72470.nnic	chr5	+	671	3	NNC	ENSMUSG00000033209.18	novel	10780	24	NA	NA	-1099	29571	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	2	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGATTGTGGCTTTTAGAT	NA	False	NA	NA	False	AATAAA	-24	NA	111026569	111091753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_111026695_111040697_111040977_111091486
transcript_72474.known	chr5	+	2761	12	FSM	ENSMUSG00000050017.12	ENSMUST00000086635.9	2761	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	273.518821024341	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGTGTGCTCCTGTGGT	NA	False	NA	16	True	AATAAA	-17	NA	111478628	111536225	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_111478700_111483360_111483392_111486148_111486295_111494348_111494441_111494985_111494994_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533471_111534368
transcript_72478.known	chr5	+	2632	11	FSM	ENSMUSG00000050017.12	ENSMUST00000200298.2	2632	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	361.683231571495	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGTGTGCTCCTGTGGT	NA	False	NA	16	True	AATAAA	-17	NA	111478672	111536225	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_111478700_111483360_111483392_111486148_111486295_111494348_111494441_111494985_111494994_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111534368
transcript_72496.known	chr5	-	906	5	FSM	ENSMUSG00000085271.8	ENSMUST00000137398.8	906	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	3.76662979332984	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATGCAAAATACTGGAGC	NA	False	NA	NA	False	AATAAA	-31	NA	111909569	111882149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_111882676_111886992_111887080_111887701_111887776_111895707_111895859_111909501
transcript_72497.nnic	chr5	-	1949	5	NNC	ENSMUSG00000085271.8	novel	906	5	NA	NA	-41	606	intron_retention	FALSE	canonical	2	8	junction_4	1.08972473588517	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATTTTTTCCTCATGGTA	NA	False	NA	NA	False	AATAGA	-14	NA	111909632	111881543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_111883050_111886992_111887080_111887701_111887776_111895707_111895859_111909501
transcript_72498.known	chr5	-	729	5	FSM	ENSMUSG00000085271.8	ENSMUST00000129065.8	729	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	2.54950975679639	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGGCCTTCTTACCATTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	111909591	111882168	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_111882496_111886992_111887080_111887701_111887776_111895707_111895859_111909501
transcript_72509.known	chr5	+	1813	7	FSM	ENSMUSG00000029344.16	ENSMUST00000239473.2	1813	7	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_1	59.7847992571876	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGAGTGAGTAGCTTTCT	NA	False	NA	21	True	AATAAA	-31	NA	112424572	112463221	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_112424638_112451765_112451838_112455431_112456344_112457554_112457754_112459549_112459601_112461107_112461157_112462756
transcript_72511.nic	chr5	+	1869	7	NIC	ENSMUSG00000029344.16	novel	442	5	NA	NA	-70	0	combination_of_known_junctions	FALSE	canonical	3	101	junction_1	87.1615677284942	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGAGTGAGTAGCTTTCT	NA	False	NA	21	True	AATAAA	-31	NA	112436557	112463221	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_112436679_112451765_112451838_112455431_112456344_112457554_112457754_112459549_112459601_112461107_112461157_112462756
transcript_72513.nic	chr5	+	931	6	NIC	ENSMUSG00000029344.16	novel	1813	7	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_2	115.943779479539	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGAGTGAGTAGCTTTCT	NA	False	NA	21	True	AATAAA	-31	NA	112424542	112463221	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_112424638_112451765_112451838_112457554_112457754_112459549_112459601_112461107_112461157_112462756
transcript_72514.known	chr5	+	1741	6	FSM	ENSMUSG00000029344.16	ENSMUST00000071455.7	1741	6	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	131.441241625298	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGAGTGAGTAGCTTTCT	NA	False	NA	21	True	AATAAA	-31	NA	112424572	112463221	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_112424638_112455431_112456344_112457554_112457754_112459549_112459601_112461107_112461157_112462756
transcript_72516.nic	chr5	+	957	6	NIC	ENSMUSG00000029344.16	novel	442	5	NA	NA	-70	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_2	128.790372310977	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGAGTGAGTAGCTTTCT	NA	False	NA	21	True	AATAAA	-31	NA	112436557	112463221	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_112436679_112451765_112451838_112457554_112457754_112459549_112459601_112461107_112461157_112462756
transcript_72520.known	chr5	+	3560	14	FSM	ENSMUSG00000029345.14	ENSMUST00000031288.14	3560	14	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_4	15.3503464486856	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGAAGTATATGGGTGTT	NA	False	NA	14	True	AATAAA	-16	NA	112474223	112485939	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_112474340_112475350_112475537_112475827_112476049_112477231_112477386_112477612_112477770_112478956_112479085_112479733_112479887_112480829_112481358_112481440_112481548_112482182_112482352_112482725_112482970_112483438_112483582_112483880_112484047_112484851
transcript_72522.known	chr5	-	1064	7	FSM	ENSMUSG00000029346.13	ENSMUST00000146510.8	1064	7	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	14.8884742894182	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGGTTTACAGTGCTGT	NA	False	NA	-7	True	AATAGA	-14	NA	112490886	112485257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_112485608_112485867_112485914_112486183_112486339_112487584_112487684_112487762_112487990_112488961_112489003_112490740
transcript_72524.known	chr5	+	3345	14	FSM	ENSMUSG00000042328.14	ENSMUST00000112359.9	3345	14	0	0	0	0	multi-exon	TRUE	canonical	3	34	junction_1	19.6098031274724	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGAGTGATCAGCTAGCA	NA	False	NA	9	True	AATAAA	-15	NA	112490948	112526280	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_112491030_112491909_112492915_112494459_112494551_112497150_112497295_112510974_112511083_112511411_112511529_112512386_112512482_112514764_112514838_112516801_112516839_112517320_112517418_112517811_112518611_112522745_112522879_112523218_112523328_112525824
transcript_72525.known	chr5	+	2836	14	FSM	ENSMUSG00000042328.14	ENSMUST00000035279.4	2836	14	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	21.6682900317355	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGAGTGATCAGCTAGCA	NA	False	NA	9	True	AATAAA	-15	NA	112490960	112526280	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_112491030_112492406_112492915_112494459_112494551_112497150_112497295_112510974_112511083_112511411_112511529_112512386_112512482_112514764_112514838_112516801_112516839_112517320_112517418_112517811_112518611_112522745_112522879_112523218_112523328_112525824
transcript_72528.known	chr5	+	734	2	FSM	ENSMUSG00000042328.14	ENSMUST00000176737.2	734	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCAGCTCACAGATGGTT	NA	False	NA	NA	False	NA	NA	NA	112490958	112492613	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_112490989_112491909
transcript_7253.known	chr10	+	1732	5	FSM	ENSMUSG00000020111.16	ENSMUST00000165405.2	1732	5	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_3	28.4725745235657	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAAAACAAACAA	NA	False	NA	NA	False	GATAAA	-5	NA	59538479	59587527	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_59538510_59563778_59563941_59568804_59568980_59576481_59576645_59586325
transcript_72531.known	chr5	+	820	2	FSM	ENSMUSG00000042328.14	ENSMUST00000175718.2	820	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGAAACCACCTGGATGGT	NA	False	NA	NA	False	NA	NA	NA	112490965	112492753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_112491030_112491997
transcript_72533.known	chr5	-	2678	3	FSM	ENSMUSG00000029348.12	ENSMUST00000031291.9	2678	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	1.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATGTGGTCAAGTAGCTT	NA	False	NA	NA	False	AATAAA	-16	NA	112540079	112532219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_112533728_112534624_112534739_112539023
transcript_72538.nnic	chr5	-	774	2	NNC	ENSMUSG00000058153.16	novel	4998	15	NA	NA	52760	295	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	0	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTCTAAAAGGTCTTTAC	7682	False	NA	NA	False	ATTAAA	-19	NA	112570233	112569383	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_112569905_112569980
transcript_72539.nic	chr5	-	1206	2	ISM	ENSMUSG00000058153.16	ENSMUST00000200575.5	4998	15	49820	2363	49820	295	3prime_fragment	FALSE	canonical	1	1	junction_1	0	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTCTAAAAGGTCTTTAC	4742	False	NA	NA	False	ATTAAA	-19	NA	112573173	112569383	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_112569905_112572488
transcript_72542.nnic	chr5	+	535	3	NNC	ENSMUSG00000104807.2	novel	613	3	NA	NA	-37502	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4	24	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGGTCAAGGTGTCTTA	NA	False	NA	NA	False	NA	NA	NA	112785738	112828453	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_112785898_112824588_112824815_112828303
transcript_72544.nnic	chr5	+	767	3	NNC	ENSMUSG00000104807.2	novel	613	3	NA	NA	-31370	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGGTCAAGGTGTCTTA	NA	False	NA	NA	False	NA	NA	NA	112791870	112828453	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_112792262_112824588_112824815_112828303
transcript_72546.known	chr5	-	8280	44	FSM	ENSMUSG00000072720.10	ENSMUST00000086617.11	8280	44	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_15	1.98289058114346	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTGTGGTTTCTCTGTT	NA	False	NA	NA	False	AATAAA	-16	NA	113044228	112836741	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_112836964_112839961_112841202_112863246_112863385_112864852_112864898_112871672_112871804_112905320_112905507_112908181_112908320_112909189_112909274_112910522_112910640_112912313_112912428_112923118_112923272_112930450_112930556_112933422_112933534_112937855_112938057_112938942_112939067_112943260_112943416_112946682_112946808_112950231_112950341_112951054_112951175_112957527_112957618_112959451_112959596_112959851_112959981_112965495_112965562_112975842_112975953_112978025_112978246_112978936_112979121_112982240_112982401_112985616_112985768_112987482_112987564_112988485_112988679_112991069_112991161_112994136_112994311_113006267_113006413_113013105_113013170_113013522_113013624_113014209_113014353_113016059_113016259_113019286_113019464_113020249_113020363_113021360_113021428_113021758_113023193_113025850_113026010_113027284_113027445_113044121
transcript_72547.known	chr5	-	6533	21	FSM	ENSMUSG00000042249.12	ENSMUST00000065167.9	6533	21	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_7	10.5322124931089	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGCTTGAGGCTGACATC	539	False	NA	-4	True	AATAAA	-18	NA	113163380	113058347	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_113062941_113063915_113064030_113066691_113066829_113067873_113068037_113071814_113071911_113073261_113073329_113076521_113076623_113077538_113077606_113085574_113085683_113089498_113089594_113092783_113092915_113094452_113094532_113101691_113101792_113103029_113103122_113105180_113105233_113109452_113109515_113114777_113114853_113117033_113117136_113121372_113121447_113133630_113133708_113163232
transcript_72549.known	chr5	-	1570	6	FSM	ENSMUSG00000042249.12	ENSMUST00000197776.2	1570	6	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_4	10.1862652625975	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	550	False	NA	NA	False	AGTAAA	-42	NA	113163369	113108409	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_113109515_113114777_113114853_113117033_113117136_113121372_113121447_113133630_113133708_113163232
transcript_72552.known	chr5	+	481	1	FSM	ENSMUSG00000105406.2	ENSMUST00000198638.2	481	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATGTACACAAAGAAATAA	NA	False	NA	NA	False	NA	NA	NA	113208378	113208859	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_113208400_113208900
transcript_72553.nnic	chr5	-	776	5	NNC	ENSMUSG00000029352.15	novel	816	5	NA	NA	169	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	8.69985632065266	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTCTGTGTCACTTCC	NA	False	NA	NA	False	AATAAA	-17	NA	113228088	113223704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_113223938_113225400_113225544_113226248_113226382_113227625_113227745_113227940
transcript_72554.known	chr5	-	816	5	FSM	ENSMUSG00000029352.15	ENSMUST00000076069.13	816	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	9.08295106229247	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTCTGTGTCACTTCC	NA	False	NA	NA	False	AATAAA	-17	NA	113228533	113223704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_113223938_113225400_113225544_113226248_113226382_113227625_113227745_113228345
transcript_72555.nic	chr5	-	781	4	ISM	ENSMUSG00000029352.15	ENSMUST00000076069.13	816	5	636	0	360	0	3prime_fragment	FALSE	canonical	3	12	junction_2	4.78423336480244	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTCTGTGTCACTTCC	NA	False	NA	NA	False	AATAAA	-17	NA	113227897	113223704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_113223938_113225400_113225544_113226248_113226382_113227625
transcript_72557.nnic	chr5	-	638	3	NIC	ENSMUSG00000029352.15	novel	816	5	NA	NA	360	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	10.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTCTGTGTCACTTCC	NA	False	NA	NA	False	AATAAA	-17	NA	113227897	113223704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_113223938_113226248_113226382_113227625
transcript_72564.nic	chr5	-	1542	9	ISM	ENSMUSG00000042216.14	ENSMUST00000147856.8	3012	13	-34	8200	-34	0	5prime_fragment	FALSE	canonical	3	54	junction_1	14.2280532751322	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTGTCTCCTTGGAACC	NA	False	NA	NA	False	AGTAAA	-17	NA	113428501	113413539	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_113413814_113414152_113414336_113416566_113416696_113421444_113421591_113422157_113422223_113423899_113424039_113426998_113427132_113427322_113427487_113428192
transcript_72566.nnic	chr5	-	994	6	NNC	ENSMUSG00000042216.14	novel	1102	5	NA	NA	-34	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_5	27.2176413379264	62	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGAGAGTGGTGTCTGTCC	NA	False	NA	NA	False	ATTAAA	-18	NA	113428501	113421817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_113422223_113423899_113424039_113426998_113427132_113427322_113427487_113428192_113428261_113428416
transcript_72569.known	chr5	-	1102	5	FSM	ENSMUSG00000042216.14	ENSMUST00000112324.2	1102	5	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_3	10.6389614154766	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGAGAGTGGTGTCTGTCC	NA	False	NA	NA	False	ATTAAA	-18	NA	113428453	113421817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_113422223_113423899_113424039_113426998_113427132_113427322_113427487_113428192
transcript_72572.known	chr5	+	4302	9	FSM	ENSMUSG00000063430.10	ENSMUST00000094452.4	4302	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	15.7276627316331	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCAGTTGTGTATGGCAT	NA	False	NA	14	True	ATTAAA	-24	NA	113638312	113727786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_113638807_113688483_113689396_113696409_113696525_113698961_113699147_113708697_113708820_113710299_113710475_113712079_113712245_113715323_113715525_113725853
transcript_7258.nic	chr10	+	715	3	ISM	ENSMUSG00000020111.16	ENSMUST00000167872.8	4699	4	4	11482	4	-7344	5prime_fragment	FALSE	canonical	3	180	junction_2	29.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTAACTTGGTGACCTAGT	NA	False	NA	NA	False	NA	NA	NA	59538388	59569236	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_59538510_59563778_59563941_59568804
transcript_72580.nnic	chr5	-	652	3	Antisense	novelGene_ENSMUSG00000063430.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAAGGACCAGCGTTCATC	NA	False	NA	NA	False	NA	NA	NA	113688986	113674367	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr5_-_113674770_113681556_113681597_113688776
transcript_72583.nnic	chr5	-	755	2	Antisense	novelGene_ENSMUSG00000063430.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATGTCTATGTGCAATCT	2000	False	NA	-3	True	NA	NA	NA	113722779	113711249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr5_-_113711932_113722706
transcript_72589.known	chr5	-	706	3	FSM	ENSMUSG00000042184.12	ENSMUST00000162388.8	706	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGGCGTGGTGGTGCACA	NA	False	NA	NA	False	ATTAAA	-14	NA	113862833	113830482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_113830881_113861760_113861927_113862691
transcript_7259.known	chr10	-	519	2	FSM	ENSMUSG00000091184.2	ENSMUST00000168284.2	519	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGAGCAATGTTTTATT	NA	False	NA	NA	False	NA	NA	NA	59636076	59635020	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_59635502_59636038
transcript_72590.known	chr5	+	3133	3	FSM	ENSMUSG00000053334.7	ENSMUST00000065698.7	3133	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	4.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAACATTGCGTTGTCTCA	715	False	NA	NA	False	AATAAA	-11	NA	113873863	113878661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_113874111_113874881_113875234_113876127
transcript_72591.known	chr5	-	4447	19	FSM	ENSMUSG00000018974.8	ENSMUST00000019118.8	4447	19	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_17	27.7084133944819	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTGTGCATTGCAGCT	NA	False	NA	-16	True	ATTAAA	-16	NA	113910571	113880506	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_113881365_113882604_113882796_113883107_113883261_113883640_113884093_113884684_113884854_113885983_113886061_113886822_113886936_113889263_113889374_113890274_113890334_113890451_113890530_113891658_113891767_113892293_113892433_113893430_113893587_113896199_113896325_113897281_113897334_113899155_113899341_113900889_113900995_113902133_113902261_113909381
transcript_72599.known	chr5	+	204	1	FSM	ENSMUSG00000105031.2	ENSMUST00000199823.2	204	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	280	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAATCTTGCAGCTGGTG	NA	False	NA	-69	True	NA	NA	NA	113905183	113905387	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_113905200_113905400
transcript_72600.known	chr5	+	957	5	FSM	ENSMUSG00000025825.13	ENSMUST00000026937.12	957	5	0	0	0	0	multi-exon	FALSE	canonical	3	687	junction_1	28.9179874818425	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGATTCTCGACTCCCTCA	3595	False	NA	NA	False	AATAAA	-30	NA	113910808	113916349	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_113911006_113912323_113912438_113913278_113913390_113914831_113914911_113915893
transcript_72601.known	chr5	+	489	5	FSM	ENSMUSG00000025825.13	ENSMUST00000134881.2	489	5	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	300.515390620847	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCTGCTTCCTGCCACCC	3872	False	NA	NA	False	NA	NA	NA	113911085	113916006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_113911158_113912323_113912438_113913278_113913390_113914831_113914911_113915893
transcript_72603.known	chr5	-	1855	2	FSM	ENSMUSG00000048163.14	ENSMUST00000100874.6	1855	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTCCTTCATGTGCCT	6278	False	NA	NA	False	AATAAA	-20	NA	113968562	113956607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_113958310_113968409
transcript_72605.known	chr5	-	2314	1	FSM	ENSMUSG00000048163.14	ENSMUST00000198891.2	2314	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6307	False	NA	NA	False	NA	NA	NA	113968533	113966219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_113966200_113968500
transcript_72607.known	chr5	-	3491	11	FSM	ENSMUSG00000004530.13	ENSMUST00000004646.13	3491	11	0	0	0	0	multi-exon	FALSE	canonical	3	905	junction_1	46.3810306051946	966	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTGTGCTGTGCTTCTTT	NA	False	NA	NA	False	GATAAA	-15	NA	114046819	113980496	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_113982530_113983221_113983468_113984206_113984265_113985494_113985641_113986587_113986693_113987589_113987710_113988711_113988894_113990231_113990362_114003699_114003823_114020018_114020219_114046671
transcript_72609.known	chr5	-	3136	9	FSM	ENSMUSG00000004530.13	ENSMUST00000164980.8	3136	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	320.074112511462	785	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTGTGCTGTGCTTCTTT	NA	False	NA	NA	False	GATAAA	-15	NA	114046766	113980496	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_113982530_113983221_113983468_113984206_113984265_113985494_113985641_113986587_113986693_113990231_113990362_114003699_114003823_114020018_114020219_114046671
transcript_7261.known	chr10	+	3041	9	FSM	ENSMUSG00000020109.14	ENSMUST00000147914.8	3041	9	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_8	46.5154544210846	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGGTCTGCATTGAAC	NA	False	NA	37	True	NA	NA	NA	59715377	59735124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_59715633_59725849_59726031_59726661_59726808_59728493_59728680_59728759_59728840_59730052_59730163_59731409_59731583_59732171_59732270_59733312
transcript_72616.nnic	chr5	-	1553	9	NNC	ENSMUSG00000042121.17	novel	3164	14	NA	NA	-6216	6139	at_least_one_novel_splicesite	FALSE	canonical	3	116	junction_8	98.9980271268069	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAAACAAAAACAAAACAT	NA	False	NA	NA	False	AAGAAA	-14	NA	114111033	114093314	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_114093908_114095444_114095539_114096774_114096970_114098660_114098727_114099410_114099480_114104240_114104363_114104769_114104835_114108431_114108536_114110788
transcript_7263.known	chr10	+	2238	9	FSM	ENSMUSG00000020109.14	ENSMUST00000020309.7	2238	9	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_8	81.8458917722814	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTGCGCACCAAGGACTC	NA	False	NA	NA	False	NA	NA	NA	59715447	59734343	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_59715633_59725849_59726031_59726661_59726808_59728493_59728680_59728759_59728840_59730052_59730163_59731409_59731583_59732171_59732318_59733312
transcript_72638.known	chr5	-	3164	14	FSM	ENSMUSG00000042121.17	ENSMUST00000077689.14	3164	14	0	0	0	0	multi-exon	FALSE	canonical	3	321	junction_13	41.4988415037558	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTTGATTTGTGTTAAT	3787	False	NA	NA	False	NA	NA	NA	114127804	114080252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_114081527_114084336_114084890_114088446_114088648_114089939_114090087_114091313_114091361_114093778_114093908_114095444_114095539_114096774_114096970_114098660_114098727_114099410_114099480_114104240_114104363_114104769_114104835_114108431_114108536_114127706
transcript_72639.known	chr5	+	4604	13	FSM	ENSMUSG00000029592.12	ENSMUST00000031588.12	4604	13	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_5	7.25095779113966	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTTCTTTTTTAACAGTG	NA	False	NA	NA	False	NA	NA	NA	114238375	114262781	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_114238577_114240443_114240554_114241704_114241888_114243808_114243913_114249177_114249277_114249929_114249976_114250947_114251043_114257099_114257160_114257623_114257711_114258258_114258340_114258453_114258674_114259092_114259214_114259584
transcript_72644.known	chr5	-	1482	6	FSM	ENSMUSG00000042078.15	ENSMUST00000140151.2	1482	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2.0591260281974	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAACAAAAAAAAACTTTA	NA	False	NA	NA	False	NA	NA	NA	114229441	114191827	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_114192663_114198118_114198191_114201085_114201185_114202928_114203015_114203586_114203748_114229212
transcript_7265.known	chr10	+	3070	9	FSM	ENSMUSG00000020109.14	ENSMUST00000146590.8	3070	9	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_8	64.4659551623956	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCAGTGGTGGGTCTGCA	NA	False	NA	31	True	NA	NA	NA	59715396	59735118	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_59715633_59725849_59726031_59726661_59726808_59728493_59728680_59728759_59728840_59730052_59730163_59731409_59731583_59732171_59732324_59733312
transcript_72654.known	chr5	-	1073	4	FSM	ENSMUSG00000044339.13	ENSMUST00000053657.13	1073	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	257.69534122465	1711	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGGGGGGGTGTGTGCA	8020	False	NA	-2	True	AATAAA	-22	NA	114266237	114261986	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_114262316_114263592_114263792_114265586_114265831_114265936
transcript_72655.nic	chr5	-	1058	4	NIC	ENSMUSG00000044339.13	novel	1073	4	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_3	238.844905511692	1896	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGGGGGGGTGTGTGCA	7950	False	NA	-2	True	AATAAA	-22	NA	114266307	114261986	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_114262316_114263592_114263792_114265586_114265831_114266021
transcript_72659.known	chr5	+	588	3	FSM	ENSMUSG00000029592.12	ENSMUST00000162506.2	588	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACGATGATGATGAGTGT	NA	False	NA	NA	False	NA	NA	NA	114203521	114227527	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_114203830_114224730_114224981_114227497
transcript_72660.known	chr5	-	385	2	FSM	ENSMUSG00000044339.13	ENSMUST00000149418.2	385	2	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTACACCGTCCTATTCG	8015	False	NA	NA	False	NA	NA	NA	114266242	114265666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_114265831_114266021
transcript_72662.known	chr5	-	1682	15	FSM	ENSMUSG00000042078.15	ENSMUST00000134790.8	1682	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	7.52546696632339	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTGTTTGACCATGTT	NA	False	NA	NA	False	NA	NA	NA	114203279	114166185	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_114166526_114168157_114168248_114169621_114169704_114170769_114170882_114173213_114173322_114176596_114176674_114179884_114179959_114180248_114180378_114180866_114180993_114183628_114183693_114192537_114192663_114198118_114198191_114201085_114201185_114202928_114203015_114203181
transcript_72663.known	chr5	-	899	4	FSM	ENSMUSG00000044339.13	ENSMUST00000112279.2	899	4	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_3	133.312498372141	3553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATTGTATTTGGGGGGGG	7978	False	NA	-11	True	AATAAA	-13	NA	114266279	114261995	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_114262316_114263592_114263792_114265586_114265831_114266143
transcript_72665.known	chr5	+	1985	7	FSM	ENSMUSG00000029591.15	ENSMUST00000031587.13	1985	7	0	0	0	0	multi-exon	FALSE	canonical	3	427	junction_1	117.255656106172	3083	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGCCGACTATTCTTCA	NA	False	NA	23	True	AATAAA	-19	NA	114268446	114277384	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_114268687_114269379_114269575_114270241_114270338_114273924_114274023_114274407_114274497_114275213_114275393_114276296
transcript_72676.known	chr5	+	2136	6	FSM	ENSMUSG00000029591.15	ENSMUST00000102584.11	2136	6	0	0	0	0	multi-exon	FALSE	canonical	3	690	junction_3	32.487536071546	3498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGTGTGCCGACTATTCTT	NA	False	NA	21	True	AATAAA	-17	NA	114268986	114277382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_114269575_114270241_114270338_114273924_114274023_114274407_114274497_114275213_114275393_114276296
transcript_7268.known	chr10	+	1495	8	FSM	ENSMUSG00000020109.14	ENSMUST00000142819.8	1495	8	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_6	22.8937207325413	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAAGCCTGGCTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	59715439	59732597	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_59715633_59725849_59726031_59726661_59726808_59728493_59728680_59728759_59728840_59730052_59730163_59731409_59731583_59732171
transcript_72683.known	chr5	+	1256	10	FSM	ENSMUSG00000066952.12	ENSMUST00000196676.5	1256	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.77081971672325	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAAGAAAATCTTGTCAAG	NA	False	NA	NA	False	NA	NA	NA	114494923	114501381	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_114495051_114495979_114496140_114496951_114497036_114497571_114497666_114497804_114497861_114498545_114498682_114499103_114499175_114499287_114499386_114500169_114500270_114501051
transcript_72685.known	chr5	-	1026	7	FSM	ENSMUSG00000001098.16	ENSMUST00000001125.6	1026	7	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_4	38.0379927032025	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCCCTCCCTCTGCTCCT	NA	False	NA	NA	False	NA	NA	NA	114518544	114503682	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_114503928_114505269_114505466_114506402_114506456_114507001_114507092_114508119_114508290_114512956_114513171_114518486
transcript_72694.known	chr5	-	3020	9	FSM	ENSMUSG00000029575.18	ENSMUST00000031560.14	3020	9	0	0	0	0	multi-exon	TRUE	canonical	3	162	junction_1	19.5604032422647	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATTTGTGGCTCATCTCTC	NA	False	NA	2	True	AATAAA	-36	NA	114582121	114569094	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_114571420_114573338_114573399_114574539_114574605_114574770_114574869_114575110_114575184_114575878_114575937_114576581_114576676_114580821_114580884_114581936
transcript_72702.known	chr5	-	1277	8	FSM	ENSMUSG00000029575.18	ENSMUST00000123256.3	1277	8	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_4	16.4738506458581	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTCCAGGGAGTCACCAA	NA	False	NA	NA	False	NA	NA	NA	114582053	114572688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_114573399_114574539_114574605_114574770_114574869_114575110_114575184_114575878_114575937_114576581_114576676_114580821_114580884_114581936
transcript_72705.known	chr5	-	644	7	FSM	ENSMUSG00000029575.18	ENSMUST00000112245.6	644	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	75.1570577745918	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGACTCAGCATCACCTT	NA	False	NA	NA	False	NA	NA	NA	114582082	114571260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_114571420_114573338_114573399_114574539_114574605_114575878_114575937_114576581_114576676_114580821_114580884_114581936
transcript_7271.known	chr10	+	1647	8	FSM	ENSMUSG00000020109.14	ENSMUST00000131810.8	1647	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	114.51566152581	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTCAGGGATTCAATTAAG	NA	False	NA	20	True	TTTAAA	-3	NA	59715385	59733836	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_59715633_59725849_59726031_59728493_59728680_59728759_59728840_59730052_59730163_59731409_59731583_59732171_59732318_59733312
transcript_72714.nic	chr5	+	1724	12	NIC	ENSMUSG00000041939.15	novel	1660	11	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	2	11	junction_2	45.2173812847221	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGGGCCCTGTGGGAAG	NA	False	NA	NA	False	AATAAA	-20	NA	114582340	114598652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_114582425_114582712_114582751_114583448_114583541_114584219_114584368_114588337_114588483_114588766_114588923_114590425_114590530_114590940_114590987_114593457_114593549_114593950_114594068_114596955_114597110_114598103
transcript_72716.known	chr5	+	1602	11	FSM	ENSMUSG00000041939.15	ENSMUST00000112239.9	1602	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	36.3257484437692	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGGCTCTTGCCCTCTC	NA	False	NA	NA	False	NA	NA	NA	114582346	114598538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_114582425_114583448_114583541_114584219_114584368_114588301_114588483_114588766_114588923_114590425_114590530_114590940_114590987_114593457_114593549_114593950_114594068_114596955_114597110_114598103
transcript_72720.known	chr5	+	1660	11	FSM	ENSMUSG00000041939.15	ENSMUST00000043760.15	1660	11	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_10	13.5410487038486	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGGGCCCTGTGGGAAG	NA	False	NA	NA	False	AATAAA	-20	NA	114582366	114598652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_114582425_114583448_114583541_114584219_114584368_114588337_114588483_114588766_114588923_114590425_114590530_114590940_114590987_114593457_114593549_114593950_114594068_114596955_114597110_114598103
transcript_72727.known	chr5	+	1049	8	FSM	ENSMUSG00000041939.15	ENSMUST00000137167.8	1049	8	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_2	54.8813190773825	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCCTGGCTGTCTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	114582329	114591211	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_114582425_114582712_114582751_114583448_114583541_114584219_114584368_114588337_114588483_114588766_114588923_114590425_114590530_114590940
transcript_7273.known	chr10	-	1755	3	FSM	ENSMUSG00000020108.5	ENSMUST00000020308.5	1755	3	0	0	0	0	multi-exon	FALSE	canonical	3	721	junction_1	4.5	3361	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAGTCTCATCGGCGCCA	NA	False	NA	-4	True	AATAAA	-17	NA	59787656	59785490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_59786852_59787138_59787395_59787518
transcript_72730.nic	chr5	+	1034	7	ISM	ENSMUSG00000041939.15	ENSMUST00000043760.15	1660	11	-60	7441	-23	0	5prime_fragment	FALSE	canonical	3	117	junction_1	10.1063786238637	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCCTGGCTGTCTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	114582306	114591211	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_114582425_114583448_114583541_114584219_114584368_114588337_114588483_114588766_114588923_114590425_114590530_114590940
transcript_72736.known	chr5	-	3228	16	FSM	ENSMUSG00000014158.13	ENSMUST00000071968.9	3228	16	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_12	3.23865541373096	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGAGGGTGAGGTTGGAA	NA	False	NA	NA	False	AATAAA	-20	NA	114796482	114760212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_114760872_114761668_114761791_114763071_114763200_114764804_114765122_114766653_114766721_114766868_114767035_114768010_114768085_114768482_114768576_114768804_114768964_114771195_114771376_114772576_114772876_114773507_114773649_114774370_114774524_114778184_114778358_114782574_114782992_114796402
transcript_72738.known	chr5	-	1762	5	FSM	ENSMUSG00000011884.14	ENSMUST00000012028.14	1762	5	0	0	0	0	multi-exon	TRUE	canonical	3	1353	junction_4	27.6541136180497	316	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTCTGTGGCGCTTGAT	NA	False	NA	3	True	AATAAA	-29	NA	114829045	114807458	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_114808651_114812114_114812266_114814325_114814460_114815681_114815741_114828819
transcript_72740.known	chr5	+	2882	13	FSM	ENSMUSG00000002486.16	ENSMUST00000094441.11	2882	13	0	0	0	0	multi-exon	FALSE	canonical	2	32	junction_2	9.3392838174146	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCAGGCTGTCACTGCTGC	NA	False	NA	15	True	AGTAAA	-18	NA	114845820	114860388	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_114846022_114846714_114846900_114847367_114847579_114849313_114849371_114851484_114851554_114852688_114852863_114853613_114853727_114853895_114853963_114855497_114855671_114856439_114856522_114857639_114857826_114858185_114858330_114859168
transcript_72746.known	chr5	-	2984	20	FSM	ENSMUSG00000041890.18	ENSMUST00000086564.11	2984	20	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_12	54.5305322490843	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGATGTCTCCATAATGT	NA	False	NA	-2	True	TATAAA	-14	NA	114911523	114867635	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114875408_114875499_114877093_114877343_114881791_114881942_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890392_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
transcript_72748.known	chr5	-	5032	19	FSM	ENSMUSG00000041890.18	ENSMUST00000112185.9	5032	19	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_6	46.75943160951	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTGCCCCCTCTAGTT	NA	False	NA	-3	True	AATAAA	-20	NA	114911556	114865467	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114875408_114875499_114877093_114877343_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890389_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
transcript_72751.known	chr5	-	4938	18	FSM	ENSMUSG00000041890.18	ENSMUST00000043283.14	4938	18	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_4	65.8330172418791	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTCATGTGCCCCCTCT	NA	False	NA	-7	True	AATAAA	-16	NA	114911553	114865471	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114877093_114877343_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890392_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
transcript_72752.known	chr5	+	3717	15	FSM	ENSMUSG00000041870.18	ENSMUST00000102578.11	3717	15	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_6	30.6590866112599	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTGAGTTTCATTTCTC	846	False	NA	29	True	AGTAAA	-19	NA	114912737	114943883	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_114913386_114924001_114924135_114924745_114924871_114927368_114927415_114929324_114929469_114930160_114930351_114933741_114933809_114934894_114934977_114935913_114935976_114936581_114936713_114937444_114937603_114938765_114938874_114939716_114939878_114941617_114941686_114942289
transcript_72754.nic	chr5	-	682	5	ISM	ENSMUSG00000041890.18	ENSMUST00000153756.8	2091	12	-15	17223	-15	0	5prime_fragment	FALSE	canonical	3	229	junction_4	20.2036506602149	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGGATAGTCCAGGTCT	NA	False	NA	NA	False	ATTAAA	-15	NA	114911571	114902602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
transcript_72760.known	chr5	-	1333	2	FSM	ENSMUSG00000072694.9	ENSMUST00000112160.4	1333	2	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	0	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTCTGCTGTTCTGTGC	719	False	NA	0	True	ATTAAA	-23	NA	114952037	114946256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_114947393_114951840
transcript_72761.known	chr5	-	444	2	FSM	ENSMUSG00000072694.9	ENSMUST00000140374.2	444	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTGTAAAGACATGTCCAT	9601	False	NA	NA	False	NA	NA	NA	114961521	114947096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_114947393_114961373
transcript_72762.known	chr5	-	579	2	FSM	ENSMUSG00000072694.9	ENSMUST00000061251.6	579	2	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	0	957	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTTTTGGCGTCCTTCT	750	False	NA	-3	True	NA	NA	NA	114952006	114950853	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_114951267_114951840
transcript_72763.known	chr5	-	420	2	FSM	ENSMUSG00000072694.9	ENSMUST00000100850.6	420	2	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_1	0	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGGTTATCTATGCTCA	9616	False	NA	NA	False	NA	NA	NA	114961506	114960499	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_114960787_114961373
transcript_72765.known	chr5	+	2181	6	FSM	ENSMUSG00000041827.16	ENSMUST00000112143.4	2181	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	3.38230690505755	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGTCCTCATTTGTCAC	7858	False	NA	6	True	NA	NA	NA	115061322	115075974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_115061669_115066081_115066365_115067898_115068063_115070781_115071024_115073979_115074128_115074976
transcript_72766.known	chr5	-	346	2	FSM	ENSMUSG00000087477.2	ENSMUST00000127563.2	346	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGGTCTGTTTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	115061336	115055376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_115055649_115061262
transcript_72767.known	chr5	+	2607	6	FSM	ENSMUSG00000029559.16	ENSMUST00000031538.9	2607	6	0	0	0	0	multi-exon	FALSE	canonical	3	243	junction_3	24.1909073827337	3970	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGGGATGGTGGTCCACA	NA	False	NA	NA	False	ATTAAA	-16	NA	115080216	115087842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_115080415_115083844_115083888_115084076_115084176_115084349_115084424_115085221_115085313_115085740
transcript_7277.known	chr10	+	1450	11	FSM	ENSMUSG00000044475.15	ENSMUST00000050516.14	1450	11	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_7	12.5797456254091	952	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCTGTGGTCTGTGCA	NA	False	NA	26	True	AATAAA	-16	NA	59838660	59935808	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_59838730_59840616_59840750_59843548_59843649_59848283_59848382_59849417_59849597_59877942_59878080_59885573_59885694_59898281_59898407_59900144_59900231_59933914_59934037_59935527
transcript_72775.known	chr5	+	2330	2	FSM	ENSMUSG00000029550.12	ENSMUST00000128678.2	2330	2	0	0	0	0	multi-exon	FALSE	canonical	3	700	junction_1	0	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTATTTTTTTTGA	NA	False	NA	18	True	AATACA	-16	NA	115232815	115236315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_115234015_115235184
transcript_72776.known	chr5	-	294	1	FSM	ENSMUSG00000072692.8	ENSMUST00000124641.2	294	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	582	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATTTCAATCAGTCATAAA	NA	False	NA	-52	True	NA	NA	NA	115241580	115241286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_115241300_115241600
transcript_72778.known	chr5	-	1870	10	FSM	ENSMUSG00000029545.14	ENSMUST00000031524.11	1870	10	0	0	0	0	multi-exon	FALSE	canonical	3	425	junction_3	13.7822573362984	3348	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGCCTGTGTCTGTCTT	9774	False	NA	-4	True	AATAAA	-18	NA	115257405	115248357	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_115249066_115249152_115249210_115249377_115249474_115249695_115249834_115249915_115250087_115250298_115250451_115250823_115250936_115251122_115251273_115255623_115255788_115257283
transcript_72784.known	chr5	-	3659	5	FSM	ENSMUSG00000046562.6	ENSMUST00000060798.6	3659	5	0	0	0	0	multi-exon	FALSE	canonical	3	283	junction_1	7.58287544405155	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTCCTGATTGGGCCT	NA	False	NA	10	True	AATAAA	-27	NA	115273034	115260608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_115263560_115265069_115265243_115265360_115265473_115268525_115268640_115272725
transcript_72788.known	chr5	-	5955	5	FSM	ENSMUSG00000048578.12	ENSMUST00000112121.6	5955	5	0	0	0	0	multi-exon	FALSE	canonical	3	1139	junction_2	31.3249102153542	390	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCGTGTTGAGAGTGAATT	4724	False	NA	-3	True	AATAAA	-16	NA	115296238	115281039	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_115286204_115288127_115288186_115288266_115288444_115288874_115289054_115295861
transcript_72791.known	chr5	-	1071	7	FSM	ENSMUSG00000029544.17	ENSMUST00000112109.8	1071	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	89.0561620551885	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAAAAAACCGAGAA	7519	False	NA	-26	True	NA	NA	NA	115319481	115306772	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115318850_115319031_115319458
transcript_72792.known	chr5	-	840	7	FSM	ENSMUSG00000029544.17	ENSMUST00000145197.9	840	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	87.9837421850701	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCCCTCCGCACTGTGAA	10018	False	NA	NA	False	NA	NA	NA	115324115	115307029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115318846_115319031_115324070
transcript_72796.known	chr5	-	746	6	FSM	ENSMUSG00000029544.17	ENSMUST00000112112.2	746	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_5	83.7782788078151	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAACTCTTGCAACTGGAA	9953	False	NA	NA	False	NA	NA	NA	115324180	115307004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115324070
transcript_72797.nic	chr5	-	854	3	ISM	ENSMUSG00000029544.17	ENSMUST00000112109.8	1071	7	8062	-25	7899	0	3prime_fragment	FALSE	canonical	3	234	junction_2	2	672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGGGTGGTCCTTGCTTT	2347	False	NA	-1	True	AATAAA	-20	NA	115311419	115306747	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_115307208_115310817_115310966_115311173
transcript_7280.known	chr10	+	1473	11	FSM	ENSMUSG00000044475.15	ENSMUST00000164083.4	1473	11	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	64.3808201252516	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCTGTGGTCTGTGCACG	NA	False	NA	28	True	AATAAA	-18	NA	59839148	59935810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_59839239_59840616_59840750_59843548_59843649_59848283_59848382_59849417_59849597_59877942_59878080_59885573_59885694_59898281_59898407_59900144_59900231_59933914_59934037_59935527
transcript_72801.known	chr5	+	575	4	FSM	ENSMUSG00000060152.15	ENSMUST00000128830.5	575	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	380.536755415587	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGGAATAAACATTCCTAAA	NA	False	NA	-11	True	NA	NA	NA	115376093	115379003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_115376129_115378220_115378371_115378531_115378616_115378697
transcript_72806.known	chr5	+	1025	6	FSM	ENSMUSG00000060152.15	ENSMUST00000081497.13	1025	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	325.291254109298	3382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCCCCGTGTGGTTCGAG	NA	False	NA	36	True	AATAAA	-38	NA	115373894	115379050	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_115373944_115375882_115376129_115376193_115376337_115378220_115378371_115378531_115378616_115378697
transcript_72807.known	chr5	+	428	3	FSM	ENSMUSG00000060152.15	ENSMUST00000140083.2	428	3	0	0	0	0	multi-exon	TRUE	canonical	3	23	junction_1	450.5	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAATGTGCACTTGCCTT	NA	False	NA	11	True	AATAAA	-13	NA	115378399	115379025	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_115378416_115378531_115378616_115378697
transcript_72810.known	chr5	+	2037	7	FSM	ENSMUSG00000041733.11	ENSMUST00000040421.11	2037	7	0	0	0	0	multi-exon	FALSE	canonical	3	495	junction_4	23.5442845152137	1112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCAGATGTCACTTTTTG	NA	False	NA	21	True	AATAAA	-19	NA	115417724	115435031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_115417974_115421624_115421775_115422449_115422672_115428992_115429100_115432885_115432975_115433724_115433837_115433923
transcript_72816.known	chr5	+	1217	1	FSM	ENSMUSG00000041733.11	ENSMUST00000201429.2	1217	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	115417753	115418970	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_115417800_115419000
transcript_72834.known	chr5	-	2242	1	FSM	ENSMUSG00000009013.6	ENSMUST00000202980.2	2242	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1008	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTCTGCTAGTTTGTTCA	NA	False	NA	-1	True	AATAAA	-16	NA	115438722	115436480	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_115436500_115438700
transcript_72835.known	chr5	-	2030	3	FSM	ENSMUSG00000009013.6	ENSMUST00000009157.4	2030	3	0	0	0	0	multi-exon	FALSE	canonical	3	3784	junction_1	210.5	38263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCTGGCTCAAAAACAAAAT	NA	False	NA	NA	False	AATAAA	-33	NA	115439058	115435168	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_115436893_115438571_115438710_115438890
transcript_72836.known	chr5	-	729	2	FSM	ENSMUSG00000009013.6	ENSMUST00000112090.2	729	2	0	0	0	0	multi-exon	FALSE	canonical	3	3784	junction_1	0	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTTCTAGTCCATACT	NA	False	NA	-4	True	AGTAAA	-17	NA	115438971	115436563	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_115436893_115438571
transcript_72841.nnic	chr5	+	399	3	NNC	ENSMUSG00000086368.3	novel	1851	2	NA	NA	12475	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0.5	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGCTGACTTCTGCAGA	825	False	NA	10	True	AATAAA	-21	NA	115451740	115455656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_115451912_115453016_115453119_115455530
transcript_72843.nnic	chr5	+	794	3	NNC	ENSMUSG00000086368.3	novel	1851	2	NA	NA	12483	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGCTGACTTCTGCAGA	833	False	NA	10	True	AATAAA	-21	NA	115451748	115455656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_115452315_115453016_115453119_115455530
transcript_72844.nnic	chr5	+	699	3	NNC	ENSMUSG00000086368.3	novel	1851	2	NA	NA	12491	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGCTGACTTCTGCAGA	841	False	NA	10	True	AATAAA	-21	NA	115451756	115455656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_115452228_115453016_115453119_115455530
transcript_72845.known	chr5	+	1162	4	FSM	ENSMUSG00000029538.15	ENSMUST00000031513.14	1162	4	0	0	0	0	multi-exon	FALSE	canonical	3	1733	junction_1	69.0700127889569	705	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCGTGCAGTTGTCTTTG	134	False	NA	39	True	AATATA	-18	NA	115465235	115471139	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_115465559_115468556_115468718_115470175_115470349_115470634
transcript_72848.known	chr5	-	1797	3	FSM	ENSMUSG00000029536.9	ENSMUST00000139167.3	1797	3	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	3.5	210	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTGCTGATTTTTTAC	9709	False	NA	-1	True	NA	NA	NA	115479237	115471297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_115472654_115473525_115473630_115478900
transcript_72850.known	chr5	+	1088	2	FSM	ENSMUSG00000029535.5	ENSMUST00000031508.5	1088	2	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_1	0	1452	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCACTTTATTGAGCAT	2414	False	NA	44	True	AATAAA	-36	NA	115479283	115481628	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_115479477_115480733
transcript_72858.known	chr5	-	571	3	FSM	ENSMUSG00000041697.10	ENSMUST00000040154.10	571	3	0	0	0	0	multi-exon	FALSE	canonical	3	7177	junction_2	62.5	62669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGACGGTACGATTTTAT	4854	False	NA	-26	True	AATAAA	-26	NA	115487040	115483700	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_115483986_115486623_115486767_115486897
transcript_72859.known	chr5	-	620	2	FSM	ENSMUSG00000041697.10	ENSMUST00000137766.2	620	2	0	0	0	0	multi-exon	FALSE	canonical	3	7302	junction_1	0	1545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGATGGTCCGTGAGCTGG	4921	False	NA	-41	True	AATAAA	-11	NA	115486973	115483715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_115483986_115486623
transcript_72861.known	chr5	+	481	2	FSM	ENSMUSG00000107288.2	ENSMUST00000202607.2	481	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTAAAAAAAAAATCTAGGG	2687	False	NA	NA	False	NA	NA	NA	115487188	115491214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_115487220_115490764
transcript_72863.known	chr5	+	370	3	FSM	ENSMUSG00000087292.2	ENSMUST00000151159.2	370	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	5	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAGCAGCTGGCCCCCGA	4782	False	NA	NA	False	NA	NA	NA	115497155	115560922	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_115497328_115548673_115548759_115560809
transcript_72866.nnic	chr5	-	423	2	Antisense	novelGene_ENSMUSG00000054256.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	25	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCACATACCTTTAATCCC	NA	False	NA	NA	False	NA	NA	NA	115583654	115582214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr5_-_115582508_115583524
transcript_72878.known	chr5	+	371	3	FSM	ENSMUSG00000029522.13	ENSMUST00000202822.2	371	3	0	0	0	0	multi-exon	FALSE	canonical	3	341	junction_1	888.5	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGTACCTGCTGTCAG	NA	False	NA	4	True	NA	NA	NA	115604324	115612755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_115604380_115610051_115610180_115612567
transcript_72880.known	chr5	-	1645	5	FSM	ENSMUSG00000029524.17	ENSMUST00000112067.8	1645	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	17.7623196683316	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATGTGTGGACTGTGAAC	9448	False	NA	NA	False	AATAAA	-19	NA	115622356	115616068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_115616468_115617660_115617872_115618289_115618585_115620682_115621178_115622111
transcript_72881.known	chr5	-	1794	5	FSM	ENSMUSG00000029524.17	ENSMUST00000112066.2	1794	5	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_3	4.96865172858795	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATGTGTGGACTGTGAAC	9020	False	NA	NA	False	AATAAA	-19	NA	115622784	115616068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_115616468_115617660_115617872_115618289_115618585_115620682_115621178_115622390
transcript_72887.known	chr5	+	141	1	FSM	ENSMUSG00000119520.1	ENSMUST00000239680.1	141	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAATAATTGTGGTTTAAA	NA	False	NA	NA	False	NA	NA	NA	115627517	115627658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_115627500_115627700
transcript_72888.nnic	chr5	-	488	2	Genic_Genomic	ENSMUSG00000081282.3	novel	501	1	NA	NA	186	327	multi-exon	FALSE	canonical	2	4	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTCTCCAAAGTGGTTTT	1476	False	NA	NA	False	AATAAA	-26	NA	115630328	115629686	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr5_-_115630090_115630243
transcript_72890.known	chr5	+	3706	11	FSM	ENSMUSG00000029528.20	ENSMUST00000067268.15	3706	11	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_6	21.5722043379901	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGATGTTATTTCTTGGGA	NA	False	NA	19	True	AATAAA	-23	NA	115644734	115694046	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_115644928_115682401_115682629_115682939_115683056_115683430_115683568_115683662_115683865_115684871_115685008_115689909_115690081_115690162_115690337_115690822_115690905_115691036_115691186_115691927
transcript_72900.known	chr5	+	1358	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	0	0	0	0	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	107276	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCCCAAGCCTGGCCTTT	NA	False	NA	3	True	ATTAAA	-14	NA	115697525	115701786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
transcript_72903.known	chr5	+	2224	15	FSM	ENSMUSG00000041638.19	ENSMUST00000141472.8	2224	15	0	0	0	0	multi-exon	TRUE	canonical	3	386	junction_9	39.4497872527307	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACCAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	115703330	115722297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_115703366_115709467_115709571_115712637_115712702_115713223_115713356_115714178_115714288_115716950_115717050_115717134_115717270_115717693_115717763_115717845_115717955_115718563_115718639_115719061_115719191_115719548_115719600_115719839_115719939_115720322_115720497_115721456
transcript_72904.known	chr5	-	768	1	FSM	ENSMUSG00000107121.2	ENSMUST00000201728.2	768	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTGACATTAGTTTTCC	NA	False	NA	NA	False	AATACA	-17	NA	115769875	115769107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_115769100_115769900
transcript_72905.known	chr5	+	2820	6	FSM	ENSMUSG00000029518.16	ENSMUST00000031492.15	2820	6	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_5	16.4438438328756	203	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTAGGGTCTGTCTGCTC	NA	False	NA	25	True	AATAAA	-21	NA	115769966	115785795	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_115770258_115775774_115775826_115778138_115778263_115781426_115781552_115781633_115781759_115783691
transcript_72908.known	chr5	-	1874	3	FSM	ENSMUSG00000041609.17	ENSMUST00000118576.8	1874	3	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_2	14.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTTGTGCCTCAGTTCCT	NA	False	NA	-3	True	AATAAA	-14	NA	115791045	115786235	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_115787629_115789877_115789999_115790685
transcript_72909.known	chr5	-	1568	3	FSM	ENSMUSG00000041609.17	ENSMUST00000121746.8	1568	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	16.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGACCTTGTGCCTCAGTT	NA	False	NA	-6	True	AATAAA	-11	NA	115791040	115786238	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_115787629_115789877_115789999_115790983
transcript_72911.known	chr5	-	483	1	FSM	ENSMUSG00000083833.5	ENSMUST00000118829.2	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	217	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGACTCCTGCCAGTGTG	NA	False	NA	NA	False	NA	NA	NA	115940218	115939735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_115939700_115940200
transcript_72912.known	chr5	+	1671	11	FSM	ENSMUSG00000029516.20	ENSMUST00000147330.8	1671	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	12.568213874692	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAT	8481	False	NA	NA	False	CATAAA	-36	NA	115983336	116063761	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_115983383_115984405_115984526_115989210_115989353_115997256_115997433_116001016_116001119_116011910_116012054_116013947_116014039_116022924_116023129_116024712_116024867_116046696_116046881_116063452
transcript_72924.known	chr5	-	2026	8	FSM	ENSMUSG00000029513.15	ENSMUST00000111999.8	2026	8	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_7	27.0313499024932	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACTTTTGACTCGGCACA	NA	False	NA	-4	True	AATAAA	-21	NA	116162567	116151648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_116152786_116152972_116153042_116156006_116156141_116158062_116158178_116158432_116158527_116159541_116159706_116162149_116162319_116162423
transcript_72926.known	chr5	-	2089	7	FSM	ENSMUSG00000029513.15	ENSMUST00000031486.14	2089	7	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_6	10.0788557551606	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGACTCGGCACATTTT	NA	False	NA	0	True	AATAAA	-25	NA	116162521	116151644	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_116152786_116152972_116153042_116156006_116156141_116158062_116158178_116158432_116158527_116159541_116159706_116162149
transcript_72927.known	chr5	-	794	7	FSM	ENSMUSG00000029513.15	ENSMUST00000148208.2	794	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	82.0135490161365	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGAATGAGAGGCAGCCAT	NA	False	NA	NA	False	AAAAAG	-33	NA	116162510	116152708	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_116152786_116152972_116153042_116156006_116156141_116158432_116158527_116159541_116159706_116162149_116162319_116162423
transcript_72929.known	chr5	-	1019	6	FSM	ENSMUSG00000029513.15	ENSMUST00000133098.9	1019	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	88.9570682970162	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCAGAGATGTCTACAGCC	NA	False	NA	NA	False	NA	NA	NA	116162415	116152493	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_116152786_116152972_116153042_116156006_116156141_116158432_116158527_116159541_116159706_116162149
transcript_72934.known	chr5	+	1599	2	FSM	ENSMUSG00000086655.2	ENSMUST00000127792.2	1599	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATACAACCTGTTAGAAT	NA	False	NA	NA	False	ATTAAA	-12	NA	116261672	116267169	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_116261887_116265784
transcript_72937.known	chr5	-	531	2	FSM	ENSMUSG00000084921.2	ENSMUST00000132130.2	531	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTGTGGAAAGAGACTGCT	NA	False	NA	NA	False	NA	NA	NA	116447419	116443740	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_116444251_116447398
transcript_7294.known	chr10	+	1230	6	FSM	ENSMUSG00000044475.15	ENSMUST00000219778.2	1230	6	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_5	94.044670237074	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTAAATCTGTATTTTAT	NA	False	NA	NA	False	ATTAAA	-35	NA	59838626	59862161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_59838730_59840616_59840750_59843548_59843649_59848283_59848382_59849417_59849597_59861544
transcript_72944.known	chr5	-	1816	3	FSM	ENSMUSG00000041548.5	ENSMUST00000036991.5	1816	3	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_2	24.5	2265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGCTTCATTTAGCGA	NA	False	NA	0	True	AATAAA	-20	NA	116560923	116546549	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_116547550_116553465_116553530_116560171
transcript_72951.known	chr5	-	749	3	FSM	ENSMUSG00000041548.5	ENSMUST00000133335.2	749	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	178	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTGGCTTGGTTGATGGGA	NA	False	NA	NA	False	NA	NA	NA	116553951	116546998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_116547550_116553465_116553530_116553817
transcript_72954.nnic	chr5	-	1224	2	NNC	ENSMUSG00000041548.5	novel	1816	3	NA	NA	5495	-3	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	0	486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTTGTGCTTCATTTAG	NA	False	NA	-3	True	AATAAA	-17	NA	116548456	116546552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_116547550_116548229
transcript_72955.nnic	chr5	+	433	3	NNC	ENSMUSG00000086219.8	novel	562	3	NA	NA	7721	481	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	62	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTGTTGTTGTTGTTTTG	NA	False	NA	11	True	NA	NA	NA	116584499	116600638	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_116584607_116599782_116599924_116600453
transcript_72958.known	chr5	-	2798	2	FSM	ENSMUSG00000063919.12	ENSMUST00000139425.2	2798	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTTGTATATCTTTTTTT	6958	False	NA	NA	False	NA	NA	NA	116584903	116580490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_116582934_116584548
transcript_72977.known	chr5	+	3360	4	FSM	ENSMUSG00000086219.8	ENSMUST00000126959.5	3360	4	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_3	60.4281023659982	1584	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTGTCCTTCACAACCA	NA	False	NA	NA	False	NA	NA	NA	116576778	116603546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_116576898_116577427_116577496_116599782_116599863_116600453
transcript_72978.nnic	chr5	+	586	4	NNC	ENSMUSG00000086219.8	novel	3360	4	NA	NA	-73	481	at_least_one_novel_splicesite	FALSE	canonical	3	130	junction_3	120.252512101272	919	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTGTTGTTGTTGTTTTG	NA	False	NA	11	True	NA	NA	NA	116576705	116600638	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_116576898_116577427_116577496_116599782_116599924_116600453
transcript_72991.known	chr5	+	562	3	FSM	ENSMUSG00000086219.8	ENSMUST00000133548.5	562	3	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_2	4	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTCATTCCGTTTAAAG	NA	False	NA	NA	False	NA	NA	NA	116576778	116600157	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_116576898_116577427_116577496_116599782
transcript_72995.known	chr5	-	1694	13	FSM	ENSMUSG00000066900.12	ENSMUST00000166397.3	1694	13	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	144.428375174533	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTGCCTTGGGCTTCTAC	NA	False	NA	-23	True	AATAAA	-15	NA	117254178	117230501	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_117230922_117231010_117231097_117232974_117233060_117236335_117236442_117237365_117237388_117237541_117237604_117238664_117238761_117243219_117243377_117244710_117244731_117246412_117246485_117247822_117247879_117250874_117250945_117253736
transcript_72996.known	chr5	-	2425	12	FSM	ENSMUSG00000066900.12	ENSMUST00000086471.12	2425	12	0	0	0	0	multi-exon	FALSE	canonical	3	565	junction_3	37.0610396664344	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCACGTGGTCTGTTTC	NA	False	NA	-4	True	GATAAA	-18	NA	117254063	117229744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_117231097_117232974_117233060_117236335_117236442_117237365_117237388_117237541_117237604_117238664_117238761_117243219_117243377_117244710_117244731_117246412_117246485_117247822_117247879_117250874_117250945_117253736
transcript_73.known	ERCC-00154	+	521	1	FSM	ERCC-00154A	DQ854997	521	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00154_+_0_500
transcript_73001.known	chr5	-	1240	4	FSM	ENSMUSG00000032959.13	ENSMUST00000036951.13	1240	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1275.14783456664	30551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCTGCGGGTATTTCCTT	NA	False	NA	-17	True	AATAAA	-15	NA	117425690	117420718	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_117421531_117423785_117423887_117424199_117424310_117425473
transcript_73007.known	chr5	-	779	5	FSM	ENSMUSG00000032959.13	ENSMUST00000111973.8	779	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1144.02021398225	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTAGGGTGTCTTCCCTC	NA	False	NA	NA	False	NA	NA	NA	117425648	117421203	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_117421531_117422128_117422195_117423785_117423887_117424199_117424310_117425473
transcript_73008.known	chr5	+	4236	10	FSM	ENSMUSG00000066894.15	ENSMUST00000111967.8	4236	10	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_3	6.48264539813992	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATTTCTATGGTCTTGAT	NA	False	NA	3	True	AATAAA	-19	NA	117457147	117493070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_117457569_117461564_117461646_117462917_117463200_117472832_117473133_117476271_117476527_117481790_117482079_117486359_117486471_117487948_117487965_117489629_117489857_117490815
transcript_73009.known	chr5	+	1691	5	FSM	ENSMUSG00000066894.15	ENSMUST00000145052.8	1691	5	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_3	7.88590514779375	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAACAAAAAAAATGAAATC	NA	False	NA	NA	False	NA	NA	NA	117457382	117477113	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_117457569_117461564_117461646_117462917_117463200_117472832_117473133_117476271
transcript_73012.known	chr5	+	572	3	FSM	ENSMUSG00000066894.15	ENSMUST00000128524.2	572	3	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	2	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGAGTGTGGGCTTTAGTG	NA	False	NA	NA	False	NA	NA	NA	117457425	117463265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_117457569_117461564_117461646_117462917
transcript_73013.known	chr5	-	748	1	FSM	ENSMUSG00000072688.3	ENSMUST00000202768.2	748	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-31	NA	117457309	117456561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_117456600_117457300
transcript_73016.known	chr5	+	2421	9	FSM	ENSMUSG00000029364.16	ENSMUST00000031309.16	2421	9	0	0	0	0	multi-exon	FALSE	canonical	3	560	junction_4	52.4760361974873	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTCTCTGTTCTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	117495368	117516666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_117495539_117501655_117501825_117508755_117509001_117509153_117509286_117512177_117512279_117513833_117514007_117514561_117514673_117514755_117514864_117515454
transcript_73018.known	chr5	-	772	3	FSM	ENSMUSG00000029363.15	ENSMUST00000111953.2	772	3	0	0	0	0	multi-exon	FALSE	canonical	3	1895	junction_2	55	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGAATTGTAGTACAGTT	NA	False	NA	NA	False	NA	NA	NA	117527110	117524345	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_117524924_117525933_117525999_117526981
transcript_73020.known	chr5	+	3492	2	FSM	ENSMUSG00000086075.2	ENSMUST00000140833.2	3492	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGGTCTCTCATGATTCCT	NA	False	NA	NA	False	NA	NA	NA	117527203	117531563	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_117527351_117528218
transcript_73021.nic	chr5	+	2761	3	ISM	ENSMUSG00000029361.19	ENSMUST00000102557.10	4591	29	82438	-2253	30377	1798	3prime_fragment	FALSE	canonical	3	46	junction_1	6.5	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAACGAAGCAAGGT	NA	False	NA	NA	False	NA	NA	NA	118087616	118094227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_118087894_118090829_118090949_118091862
transcript_73023.nic	chr5	+	963	3	ISM	ENSMUSG00000029361.19	ENSMUST00000102557.10	4591	29	82438	-455	30377	0	3prime_fragment	FALSE	canonical	3	46	junction_1	6.5	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTTCCTAGATGTCGTTA	NA	False	NA	NA	False	NA	NA	NA	118087616	118092429	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_118087894_118090829_118090949_118091862
transcript_73025.known	chr5	+	3959	12	FSM	ENSMUSG00000032898.10	ENSMUST00000202447.4	3959	12	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_9	98.2366008780135	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCAGTGACCTGCCCGCTT	NA	False	NA	11	True	AATAAA	-22	NA	118114794	118148266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_118115105_118115922_118116059_118117805_118117901_118124163_118124286_118126842_118126990_118127188_118127326_118128867_118129005_118132546_118132727_118133434_118133568_118138381_118138594_118140079_118140238_118146074
transcript_73027.known	chr5	+	3883	12	FSM	ENSMUSG00000032898.10	ENSMUST00000035579.10	3883	12	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_9	49.846707161818	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCAGTGACCTGCCCGCT	NA	False	NA	10	True	AATAAA	-21	NA	118114848	118148265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_118115105_118115922_118116059_118117805_118117901_118124163_118124286_118126842_118126990_118127188_118127326_118128867_118129005_118132546_118132727_118133434_118133568_118138402_118138594_118140079_118140238_118146074
transcript_73030.known	chr5	+	1971	4	FSM	ENSMUSG00000032898.10	ENSMUST00000201427.4	1971	4	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_3	13.0979218029257	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAATTA	NA	False	NA	NA	False	NA	NA	NA	118114838	118125637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_118115105_118115922_118116059_118117805_118117901_118124163
transcript_73031.nnic	chr5	+	1069	9	NNC	ENSMUSG00000029359.14	novel	785	8	NA	NA	-36	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	38.0747619821845	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCGGCATCCCCATCTGTC	4332	False	NA	9	True	AATAAA	-14	NA	118174059	118199935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_118174195_118179442_118179599_118184379_118184450_118191648_118191730_118192894_118193035_118194441_118194504_118194601_118194710_118197506_118197555_118199666
transcript_73034.known	chr5	+	981	8	FSM	ENSMUSG00000029359.14	ENSMUST00000124648.8	981	8	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	26.954231805876	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGACAATAAAGGTTTCCT	NA	False	NA	-16	True	NA	NA	NA	118165829	118199910	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_118166053_118184379_118184450_118191648_118191730_118192894_118193035_118194441_118194509_118194601_118194710_118197506_118197555_118199666
transcript_73036.known	chr5	+	785	8	FSM	ENSMUSG00000029359.14	ENSMUST00000151792.8	785	8	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	31.162510181568	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGTAACCCTTCTTCAGT	4368	False	NA	-88	True	NA	NA	NA	118174095	118199838	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_118174195_118184379_118184450_118191648_118191730_118192894_118193035_118194441_118194509_118194601_118194710_118197506_118197555_118199666
transcript_73038.known	chr5	+	994	7	FSM	ENSMUSG00000029359.14	ENSMUST00000135540.8	994	7	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	15.0111069989303	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCGGCATCCCCATCTGTC	NA	False	NA	9	True	AATAAA	-14	NA	118165934	118199935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_118166053_118184379_118184450_118191648_118191730_118192894_118193035_118194441_118194710_118197506_118197555_118199666
transcript_7304.known	chr10	-	1379	5	FSM	ENSMUSG00000020107.11	ENSMUST00000020307.11	1379	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	152.559004978402	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGCTGTGCGTATCCTTT	NA	False	NA	-4	True	AATAAA	-18	NA	59838933	59823729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_59824661_59826654_59826730_59832269_59832437_59838239_59838290_59838777
transcript_73040.nic	chr5	+	1022	7	NIC	ENSMUSG00000029359.14	novel	785	8	NA	NA	-47	0	intron_retention	FALSE	canonical	3	27	junction_1	24.4040069569642	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCGGCATCCCCATCTGTC	4321	False	NA	9	True	AATAAA	-14	NA	118174048	118199935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_118174195_118184379_118184450_118191648_118191730_118192894_118193035_118194441_118194710_118197506_118197555_118199666
transcript_73043.known	chr5	-	5000	11	FSM	ENSMUSG00000032867.9	ENSMUST00000049474.9	5000	11	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_8	26.290682760248	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGGCTCGTGTCACACAG	NA	False	NA	NA	False	AATAAA	-44	NA	118293529	118203029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_118206295_118206669_118206781_118208410_118208585_118215641_118215770_118230560_118230768_118233597_118233795_118251676_118251835_118263000_118263090_118266873_118267039_118280732_118280838_118293128
transcript_73044.known	chr5	-	1937	8	FSM	ENSMUSG00000032867.9	ENSMUST00000201545.2	1937	8	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_5	29.5476094547392	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGGTCCAGATTTTAGTT	NA	False	NA	NA	False	ATTAAA	-16	NA	118293491	118215116	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_118215770_118230560_118230768_118233597_118233795_118251676_118251835_118263000_118263090_118266873_118267039_118280732_118280838_118293128
transcript_73046.known	chr5	-	4431	11	FSM	ENSMUSG00000032850.17	ENSMUST00000121369.8	4431	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_8	4.80520551069359	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGTATCTGTGAGTCAC	NA	False	NA	NA	False	AATAAA	-17	NA	118383181	118328806	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_118331732_118339212_118339315_118339430_118339497_118340838_118340989_118366848_118367003_118370466_118370568_118372205_118372283_118375191_118375662_118380522_118380582_118380914_118381097_118383036
transcript_73049.nnic	chr5	+	2541	6	NNC	ENSMUSG00000032840.8	novel	5649	5	NA	NA	-10	-2982	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	73.3255753472143	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGGCTGTGGAATGTG	1629	False	NA	6	True	NA	NA	NA	118383281	118401176	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_118383524_118393734_118393892_118397040_118397193_118397439_118397554_118399164_118399994_118400129
transcript_73051.known	chr5	+	5649	5	FSM	ENSMUSG00000032840.8	ENSMUST00000049138.8	5649	5	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_3	13.6633634219397	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTTTACAGTGCCGGG	1639	False	NA	8	True	AATAAA	-18	NA	118383291	118404158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_118383524_118393734_118393892_118397040_118397193_118397439_118397554_118399164
transcript_73057.nnic	chr5	+	764	4	Antisense	novelGene_ENSMUSG00000087516.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_3	0.816496580927726	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTCAGTGTGTCTGTCCCC	2100	False	NA	NA	False	GATAAA	-19	NA	119798770	119805754	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr5_+_119798947_119802392_119802606_119802985_119803083_119805476
transcript_7306.known	chr10	-	581	4	FSM	ENSMUSG00000020107.11	ENSMUST00000182116.8	581	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	161.142449059486	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	59838817	59824244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_59824661_59826654_59826730_59838239_59838290_59838777
transcript_73067.known	chr5	-	1008	3	FSM	ENSMUSG00000087516.8	ENSMUST00000134493.8	1008	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCTAAGACAAGCGCAGT	NA	False	NA	NA	False	AATAAA	-15	NA	119765447	119749327	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_119750108_119755894_119756022_119765346
transcript_7307.known	chr10	-	566	3	FSM	ENSMUSG00000020107.11	ENSMUST00000182912.2	566	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	171	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGGACAGCCAGGGCTA	NA	False	NA	NA	False	NA	NA	NA	59838908	59824300	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_59824661_59826654_59826730_59838777
transcript_73071.nnic	chr5	+	541	2	NNC	ENSMUSG00000085345.2	novel	464	2	NA	NA	12450	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	26	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAATTCTTTTGTTGTGTT	-2	True	NA	NA	False	NA	NA	NA	119796648	119797327	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_119796944_119797081
transcript_73072.nnic	chr5	+	411	2	NNC	ENSMUSG00000085345.2	novel	464	2	NA	NA	12487	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTTGTTGTGTTGTTGT	15	False	NA	NA	False	NA	NA	NA	119796685	119797332	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_119796846_119797081
transcript_73073.known	chr5	+	4982	7	FSM	ENSMUSG00000018604.19	ENSMUST00000079719.11	4982	7	0	0	0	0	multi-exon	FALSE	canonical	3	458	junction_2	196.719272625288	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAAACAAAAAATTAA	NA	False	NA	NA	False	NA	NA	NA	119808733	119822626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_119810470_119812090_119812359_119813622_119813770_119815565_119815643_119816745_119816898_119818459_119819131_119820695
transcript_73081.known	chr5	-	1345	3	FSM	ENSMUSG00000086847.2	ENSMUST00000135385.2	1345	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	0.5	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCTTATTTCCGGTCGGA	2703	False	NA	NA	False	ATTAAA	-17	NA	119829283	119823159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_119824120_119826288_119826463_119829072
transcript_73084.known	chr5	+	4010	24	FSM	ENSMUSG00000029594.13	ENSMUST00000031590.12	4010	24	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_16	11.5488606136917	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGATGTCACTCTGTCAC	NA	False	NA	21	True	AATAAA	-31	NA	120254529	120337046	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_120254715_120256724_120256908_120257696_120257817_120257959_120257996_120258161_120258367_120260957_120261215_120262215_120262297_120262758_120262838_120264238_120264311_120265029_120265231_120266248_120266380_120268774_120268894_120269218_120269316_120270198_120270310_120270906_120271108_120271825_120271947_120278268_120278439_120278601_120278663_120279615_120279696_120281441_120281498_120282061_120282179_120313923_120314030_120324282_120324404_120335946
transcript_73085.known	chr5	+	455	2	FSM	ENSMUSG00000029594.13	ENSMUST00000202388.2	455	2	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTACTTTTTAACTCTTC	NA	False	NA	NA	False	NA	NA	NA	120254581	120257046	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_120254715_120256724
transcript_73086.known	chr5	-	1476	9	FSM	ENSMUSG00000029596.14	ENSMUST00000031594.13	1476	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	2.2220486043289	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTGTGGCTCCCTGGGTTC	1703	False	NA	NA	False	AATAAA	-15	NA	120610875	120596266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_120596617_120597509_120597635_120597820_120598049_120598671_120598761_120600041_120600182_120600910_120600951_120601096_120601291_120605338_120605564_120610790
transcript_73089.nnic	chr5	+	2922	16	NIC	ENSMUSG00000032754.15	novel	2898	16	NA	NA	-17	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	54.5084702897938	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAAGAGTCCCACAGGGT	-21	True	NA	6	True	AATAAA	-22	NA	120649215	120672089	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_120649349_120651184_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658838_120658952_120659032_120659201_120659818_120659927_120662063_120662124_120662268_120662400_120663723_120663866_120665805_120665928_120667574_120667729_120668380_120668462_120669145_120669214_120670924
transcript_73092.known	chr5	+	2775	15	FSM	ENSMUSG00000032754.15	ENSMUST00000111890.9	2775	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	55.9101410975775	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGTACCAGAAGAGTCCCAC	63	False	NA	1	True	AATAAA	-17	NA	120649299	120672084	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_120649349_120651184_120651398_120657694_120657848_120657930_120657984_120658838_120658952_120659032_120659201_120659818_120659927_120662063_120662124_120662268_120662400_120663723_120663866_120665805_120665928_120667574_120667729_120668380_120668462_120669145_120669214_120670924
transcript_73094.nnic	chr5	+	2589	13	NIC	ENSMUSG00000032754.15	novel	2898	16	NA	NA	-17	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	57.0079794609686	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAAGAGTCCCACAGGGT	-21	True	NA	6	True	AATAAA	-22	NA	120649215	120672089	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_120649349_120651184_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658838_120658952_120659032_120659201_120659818_120659927_120665805_120665928_120667574_120667729_120668380_120668462_120669145_120669214_120670924
transcript_73100.known	chr5	+	2898	16	FSM	ENSMUSG00000032754.15	ENSMUST00000068326.14	2898	16	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_5	54.5084702897938	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAAGAGTCCCACAGGGT	-4	True	NA	6	True	AATAAA	-22	NA	120649232	120672089	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_120649349_120651184_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658845_120658952_120659032_120659201_120659818_120659927_120662063_120662124_120662268_120662400_120663723_120663866_120665805_120665928_120667574_120667729_120668380_120668462_120669145_120669214_120670924
transcript_73101.known	chr5	-	4712	28	FSM	ENSMUSG00000032741.10	ENSMUST00000046426.10	4712	28	0	0	0	0	multi-exon	TRUE	canonical	2	12	junction_13	5.06365515872966	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCTGCAGCCTTTGATTTC	9183	False	NA	1	True	AATAAA	-22	NA	120726738	120672217	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_120674290_120675625_120675707_120675876_120676017_120677067_120677153_120677274_120677344_120677853_120677901_120678638_120678755_120679942_120680033_120680519_120680592_120681409_120681518_120682477_120682551_120683139_120683194_120683322_120683380_120685513_120685559_120685999_120686064_120686335_120686385_120687555_120687681_120687990_120688108_120691507_120691608_120691817_120691877_120692340_120692376_120693197_120693287_120693932_120694064_120694536_120694651_120695834_120696012_120698280_120698409_120723249_120723494_120726567
transcript_73102.known	chr5	-	1705	15	FSM	ENSMUSG00000032741.10	ENSMUST00000200708.2	1705	15	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	5.75210697865378	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9244	False	NA	NA	False	NA	NA	NA	120726677	120685395	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_120685559_120685999_120686064_120686335_120686385_120687555_120687681_120687990_120688108_120691507_120691608_120691817_120691877_120692340_120692376_120693197_120693287_120693932_120694064_120694536_120694651_120695834_120696012_120698280_120698409_120723249_120723494_120726567
transcript_73108.nic	chr5	-	1156	4	NIC	ENSMUSG00000029600.11	novel	712	3	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_2	29.8923996285938	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTCAGTCCTGATACTC	6279	False	NA	-3	True	NA	NA	NA	120750690	120740168	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_120740583_120742274_120742313_120749442_120749795_120750338
transcript_73109.known	chr5	-	796	4	FSM	ENSMUSG00000029600.11	ENSMUST00000140554.2	796	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_3	33.2365260920372	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGAGGGGTCTCGGATGGC	6334	False	NA	NA	False	NA	NA	NA	120750635	120747975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_120748028_120749442_120749795_120750044_120750140_120750338
transcript_7311.known	chr10	-	1852	4	FSM	ENSMUSG00000020107.11	ENSMUST00000182898.8	1852	4	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_3	30.5650490302604	842	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCAGGAGTTGAAACTATT	NA	False	NA	2	True	AATAAA	-28	NA	59838957	59823230	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_59824661_59826654_59826730_59832269_59832437_59838777
transcript_73113.known	chr5	-	1573	3	FSM	ENSMUSG00000029600.11	ENSMUST00000031599.9	1573	3	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_2	1.5	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGTAGTGTGTTACTTTTT	6315	False	NA	NA	False	ATTAAA	-20	NA	120750654	120747122	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_120748028_120749442_120749795_120750338
transcript_73116.known	chr5	-	650	3	FSM	ENSMUSG00000029600.11	ENSMUST00000147596.2	650	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	12.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCTTCAGTCCTGATACT	9911	False	NA	-4	True	NA	NA	NA	120743782	120740169	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_120740583_120742274_120742313_120743583
transcript_73117.known	chr5	+	1673	5	FSM	ENSMUSG00000029601.14	ENSMUST00000094391.6	1673	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.866025403784439	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCGTTTCAAACCACACT	NA	False	NA	NA	False	ATTAAA	-16	NA	120727087	120745183	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_120727160_120738092_120738904_120740390_120740625_120743193_120743266_120744699
transcript_73118.known	chr5	-	712	3	FSM	ENSMUSG00000029600.11	ENSMUST00000156356.2	712	3	0	0	0	0	multi-exon	TRUE	canonical	2	6	junction_2	10	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTCAGTCCTGATACTC	7267	False	NA	-3	True	NA	NA	NA	120749702	120740168	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_120740583_120742274_120742313_120749442
transcript_7312.known	chr10	-	847	4	FSM	ENSMUSG00000020107.11	ENSMUST00000182152.2	847	4	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	143.861816414997	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGAGATGTTTTTCACATT	NA	False	NA	NA	False	NA	NA	NA	59838591	59824407	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_59824661_59826654_59826730_59832269_59832437_59838239
transcript_73120.known	chr5	+	4322	20	FSM	ENSMUSG00000029599.14	ENSMUST00000031598.11	4322	20	0	0	0	0	multi-exon	FALSE	canonical	3	468	junction_5	36.9159410499192	540	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAAGGTATTCCTCCTGCC	NA	False	NA	16	True	GATAAA	-26	NA	120750803	120766657	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_120751372_120755023_120755154_120756204_120756276_120756664_120756854_120756940_120756991_120757669_120757712_120757828_120757925_120758322_120758445_120758536_120758599_120758691_120758824_120759679_120759891_120761245_120761381_120761636_120761874_120761956_120762031_120762602_120762795_120763766_120763910_120763990_120764105_120764465_120764571_120764898_120765015_120765124
transcript_73127.known	chr5	+	3251	21	FSM	ENSMUSG00000029602.12	ENSMUST00000156722.2	3251	21	0	0	0	0	multi-exon	TRUE	canonical	3	12	junction_7	7.30479294709987	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGTGACGTGTTAAAATCG	NA	False	NA	11	True	TATAAA	-21	NA	120787252	120817662	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_120787600_120790878_120790936_120792870_120792985_120793132_120793195_120797567_120797698_120800075_120800158_120800248_120800381_120800983_120801070_120801790_120801909_120802035_120802190_120802510_120802576_120802810_120802924_120804307_120804501_120808340_120808479_120809605_120809751_120812631_120812805_120813454_120813593_120813670_120813807_120814852_120814974_120816687_120816759_120816986
transcript_73129.nnic	chr5	+	1376	6	NNC	ENSMUSG00000029602.12	novel	486	2	NA	NA	-3851	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	10.6282642044691	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGTGACGTGTTAAAATCG	128	False	NA	11	True	TATAAA	-21	NA	120812806	120817662	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_120813041_120813454_120813593_120813670_120813807_120814852_120814974_120816687_120816759_120816986
transcript_73131.nic	chr5	-	1820	5	ISM	ENSMUSG00000029603.16	ENSMUST00000145174.8	2961	8	12204	0	-284	0	3prime_fragment	FALSE	canonical	3	95	junction_3	13.57156954814	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGCCTTTTTCTGCCAA	NA	False	NA	-19	True	AATAAA	-15	NA	120821264	120818267	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_120819538_120820185_120820276_120820368_120820531_120820644_120820804_120821125
transcript_73133.known	chr5	-	1831	1	FSM	ENSMUSG00000029603.16	ENSMUST00000201264.2	1831	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACCAGTCCCACTGTGGG	NA	False	NA	-65	True	TTTAAA	-40	NA	120820144	120818313	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_120818300_120820100
transcript_73134.known	chr5	-	2961	8	FSM	ENSMUSG00000029603.16	ENSMUST00000145174.8	2961	8	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_7	31.3453443472057	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGCCTTTTTCTGCCAA	NA	False	NA	-19	True	AATAAA	-15	NA	120833468	120818267	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_120819538_120820185_120820276_120820368_120820531_120820644_120820804_120821125_120821188_120821359_120821522_120821751_120821814_120832474
transcript_73139.known	chr5	-	2291	7	FSM	ENSMUSG00000001166.18	ENSMUST00000117193.8	2291	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	3.19722101554181	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTTTATTATCTCTCCTT	4880	False	NA	NA	False	ATTAAA	-28	NA	120950579	120938258	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_120939129_120940105_120940260_120940886_120941123_120943468_120943666_120946024_120946314_120946645_120947110_120950498
transcript_73148.known	chr5	-	1489	7	FSM	ENSMUSG00000066861.15	ENSMUST00000162096.8	1489	7	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	130.842674825745	340	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTGTGAACTCTGAGGA	NA	False	NA	NA	False	AATAAA	-19	NA	121025676	121014784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_121015091_121015245_121015273_121016383_121016538_121017162_121017396_121019886_121020133_121023835_121024125_121025442
transcript_73155.known	chr5	-	1885	7	FSM	ENSMUSG00000052776.11	ENSMUST00000080322.8	1885	7	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_1	161.447015732372	1018	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGTCATTGGTATCAACG	NA	False	NA	NA	False	AATAAA	-37	NA	121045584	121034318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_121035088_121035242_121035270_121036381_121036536_121037135_121037369_121039932_121040118_121043658_121043948_121045356
transcript_7316.known	chr10	+	2657	15	FSM	ENSMUSG00000004207.15	ENSMUST00000179238.8	2657	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	365.052281690372	1271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATCTGGCCTTGTGTCTCT	6990	False	NA	NA	False	AATAAA	-16	NA	60113449	60138376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60133316_60133326_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
transcript_73164.nnic	chr5	+	2062	7	NNC	ENSMUSG00000032623.10	novel	2021	6	NA	NA	-25848	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	52.429052590673	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAATTAATTTATTCTCCC	NA	False	NA	19	True	ATTAAA	-25	NA	121026750	121059715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_121026866_121052672_121053130_121053724_121054014_121054901_121055099_121057064_121057298_121057959_121058114_121059098
transcript_73165.known	chr5	-	5599	16	FSM	ENSMUSG00000043733.15	ENSMUST00000100770.9	5599	16	0	0	0	0	multi-exon	TRUE	canonical	3	69	junction_6	9.90263713473448	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCATTTGGTCTGTTGT	852	False	NA	0	True	AATAAA	-23	NA	121329460	121268595	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_121272210_121272798_121272890_121275479_121275593_121281065_121281218_121281624_121281693_121282592_121282748_121287165_121287298_121290274_121290434_121290537_121290618_121292492_121292590_121300771_121300886_121301200_121301318_121302557_121302751_121305911_121306107_121310043_121310167_121329264
transcript_73166.known	chr5	-	5535	16	FSM	ENSMUSG00000043733.15	ENSMUST00000054547.9	5535	16	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_6	23.8687149959011	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACAGTATTTGTCATTTGG	920	False	NA	-8	True	AATAAA	-15	NA	121329392	121268603	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_121272210_121272798_121272890_121275479_121275593_121281065_121281218_121281624_121281693_121282592_121282760_121287165_121287298_121290274_121290434_121290537_121290618_121292492_121292590_121300771_121300886_121301200_121301318_121302557_121302751_121305911_121306107_121310043_121310167_121329264
transcript_73168.nic	chr5	-	1024	7	ISM	ENSMUSG00000043733.15	ENSMUST00000100770.9	5599	16	-18	23926	-18	-20619	5prime_fragment	FALSE	canonical	3	78	junction_1	7.38617326872011	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAAAACAGATACAAAAACA	834	False	NA	NA	False	NA	NA	NA	121329478	121292521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_121292590_121300771_121300886_121301200_121301318_121302557_121302751_121305911_121306107_121310043_121310167_121329264
transcript_73169.known	chr5	-	737	5	FSM	ENSMUSG00000043733.15	ENSMUST00000148871.2	737	5	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_4	2.38484800354236	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAACAGATCTGATTTTTT	NA	False	NA	NA	False	NA	NA	NA	121281698	121271902	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_121272210_121272798_121272890_121275479_121275593_121281065_121281218_121281624
transcript_7319.known	chr10	+	2654	14	FSM	ENSMUSG00000004207.15	ENSMUST00000004316.15	2654	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	282.946207278023	2060	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATCTGGCCTTGTGTCTCT	6990	False	NA	NA	False	AATAAA	-16	NA	60113449	60138376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134870_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
transcript_73195.known	chr5	+	1270	7	FSM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	0	0	0	0	multi-exon	FALSE	canonical	3	7748	junction_1	3319.97705815367	32548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTGACTATAGACTCA	NA	False	NA	NA	False	AATAGA	-23	NA	121342543	121347304	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
transcript_73238.known	chr5	+	829	2	FSM	ENSMUSG00000029614.14	ENSMUST00000146579.2	829	2	0	0	0	0	multi-exon	FALSE	canonical	3	7748	junction_1	0	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAGAAGTGTGTTAGAGTT	NA	False	NA	NA	False	NA	NA	NA	121342583	121344265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_121342616_121343468
transcript_73239.known	chr5	+	714	1	FSM	ENSMUSG00000029614.14	ENSMUST00000197044.2	714	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1280	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAACAAAAAA	NA	False	NA	NA	False	AAAAAG	-10	NA	121342608	121343322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_121342600_121343300
transcript_73240.known	chr5	+	486	4	FSM	ENSMUSG00000029614.14	ENSMUST00000201155.2	486	4	0	0	0	0	multi-exon	FALSE	canonical	2	335	junction_2	7809.67657603196	1971	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTGGTGTCCTTTTTGT	NA	False	NA	0	True	ATTAAA	-14	NA	121344786	121347028	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_121344874_121345209_121345259_121346472_121346639_121346844
transcript_73241.known	chr5	+	947	2	FSM	ENSMUSG00000029614.14	ENSMUST00000124330.2	947	2	0	0	0	0	multi-exon	FALSE	canonical	3	17353	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAGCCACCCAGGGCTACA	NA	False	NA	NA	False	NA	NA	NA	121343471	121344508	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_121343727_121343816
transcript_73242.known	chr5	-	2425	12	FSM	ENSMUSG00000042726.15	ENSMUST00000120784.8	2425	12	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	10.9499235817553	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGCTTGTGATTCTTTC	3630	False	NA	-4	True	AATAAA	-14	NA	121523634	121509792	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_121510476_121510665_121510739_121511212_121511538_121512009_121512131_121513078_121513310_121513858_121513936_121515800_121516008_121516558_121516965_121517478_121517533_121517608_121517745_121522102_121522168_121523587
transcript_73246.known	chr5	+	5447	24	FSM	ENSMUSG00000042719.18	ENSMUST00000042163.15	5447	24	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_8	45.1361728780741	167	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCAGGTTTGTTGAGACT	NA	False	NA	19	True	AATACA	-18	NA	121535998	121580472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_121536126_121545255_121545342_121546259_121546399_121547148_121547268_121551069_121551145_121552551_121552660_121552864_121552944_121555439_121555552_121555989_121556080_121558525_121558696_121559353_121559467_121561597_121561806_121562576_121562667_121564033_121564215_121564789_121564890_121568667_121568820_121569522_121569649_121572888_121573133_121573522_121573647_121574721_121574788_121575670_121575769_121576790_121576902_121577397_121577545_121577890
transcript_73252.known	chr5	-	2234	14	FSM	ENSMUSG00000029454.16	ENSMUST00000031410.14	2234	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	50.8494703910793	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCTATATAGATTTAAGTT	NA	False	NA	4	True	AATAAA	-30	NA	121683968	121663100	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_121663303_121663725_121663831_121664801_121664924_121665153_121665285_121666932_121667054_121669595_121669784_121671371_121671453_121672397_121672494_121673916_121674007_121675174_121675284_121676455_121676554_121677234_121677311_121678564_121678639_121683227
transcript_73256.known	chr5	+	1366	11	FSM	ENSMUSG00000029452.19	ENSMUST00000094357.11	1366	11	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	4.13400532171888	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATAAATCTCAGGTTC	NA	False	NA	NA	False	NA	NA	NA	121601214	121633457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_121601334_121601849_121601897_121602861_121602926_121605916_121606049_121620395_121620501_121625812_121625863_121627310_121627395_121629138_121629278_121631693_121631839_121632266_121632341_121633050
transcript_73261.known	chr5	+	1288	10	FSM	ENSMUSG00000029452.19	ENSMUST00000031405.12	1288	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	6.43102050155013	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCGTCATTTGCAAGCTC	NA	False	NA	NA	False	AATAAA	-18	NA	121601214	121633484	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_121601334_121601849_121601897_121602861_121602926_121605916_121606049_121625812_121625863_121627310_121627395_121629138_121629278_121631693_121631839_121632266_121632341_121633050
transcript_73272.known	chr5	-	1123	2	FSM	ENSMUSG00000029616.10	ENSMUST00000052590.8	1123	2	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	0	777	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGATGGTTTTCTTTTTAG	3222	False	NA	-41	True	AATAAA	-14	NA	121590559	121582818	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_121583636_121590253
transcript_73273.known	chr5	-	578	4	FSM	ENSMUSG00000029454.16	ENSMUST00000126524.5	578	4	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_2	20.9920619917784	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATTGCTTAAAGTTGCTA	8672	False	NA	-10	True	AATAAA	-16	NA	121665316	121663114	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_121663303_121663725_121663831_121664801_121664924_121665153
transcript_73279.known	chr5	-	3867	13	FSM	ENSMUSG00000029455.15	ENSMUST00000031411.15	3867	13	0	0	0	0	multi-exon	TRUE	canonical	3	476	junction_10	93.9036148872283	3145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCCTGGCGTGGTGCCTC	NA	False	NA	NA	False	AATAAA	-27	NA	121731887	121704089	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_121706087_121706988_121707104_121708666_121708825_121710079_121710245_121710738_121710924_121711485_121711589_121713153_121713268_121713958_121714088_121714519_121714632_121716405_121716486_121717666_121717808_121718676_121718782_121731424
transcript_73285.known	chr5	-	1799	11	FSM	ENSMUSG00000029455.15	ENSMUST00000129753.8	1799	11	0	0	0	0	multi-exon	FALSE	canonical	3	476	junction_8	71.1047818363857	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACACTCTCTGGCAGGCCT	NA	False	NA	NA	False	NA	NA	NA	121731643	121708378	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_121708825_121710079_121710245_121710738_121710924_121711485_121711589_121713153_121713268_121713958_121714088_121714519_121714632_121716405_121716486_121717666_121717808_121718676_121718782_121731424
transcript_7329.known	chr10	+	375	2	FSM	ENSMUSG00000090439.4	ENSMUST00000218974.2	375	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGCGCCTGGGCTCGCTGC	NA	False	NA	NA	False	NA	NA	NA	60235682	60238990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_60235799_60238731
transcript_73295.nnic	chr5	-	2162	12	NNC	ENSMUSG00000042647.14	novel	3881	11	NA	NA	-28	-1483	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	13.7846483061999	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTCTACTTCCTATG	NA	False	NA	-1	True	NA	NA	NA	121757029	121736450	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_121736569_121736702_121737026_121737257_121737336_121737951_121738096_121742316_121742490_121743605_121743765_121745225_121745317_121745422_121745561_121745958_121746100_121747828_121748230_121752122_121752323_121756833
transcript_73298.known	chr5	-	2269	7	FSM	ENSMUSG00000042647.14	ENSMUST00000111776.6	2269	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	4.49691252107735	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATCAACTCCCTTTCTAT	NA	False	NA	NA	False	NA	NA	NA	121757001	121742634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_121743765_121745225_121745317_121745422_121745561_121745958_121746100_121747828_121748230_121752122_121752323_121756833
transcript_7330.known	chr10	-	5240	6	FSM	ENSMUSG00000020100.16	ENSMUST00000117513.8	5240	6	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	5.08330601085553	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGGTTGGTGTCTCCATT	NA	False	NA	-5	True	AATAAA	-21	NA	60588561	60547850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_60552270_60556639_60556803_60559542_60559770_60566348_60566432_60586164_60586464_60588512
transcript_73301.known	chr5	-	3626	21	FSM	ENSMUSG00000029456.13	ENSMUST00000111770.2	3626	21	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	12.9348366823861	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCCTGTTCTGAGCTAGAT	NA	False	NA	-7	True	NA	NA	NA	121798577	121759090	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_121759443_121760052_121760131_121760741_121760886_121764110_121764284_121765327_121765487_121767963_121768055_121768160_121768299_121768707_121768849_121769339_121769741_121770551_121770726_121772739_121772886_121775306_121775458_121777186_121777369_121780674_121780744_121783431_121783574_121784764_121784925_121785897_121786057_121787416_121787612_121790018_121790168_121794076_121794277_121798355
transcript_73303.known	chr5	+	891	6	FSM	ENSMUSG00000042605.17	ENSMUST00000161159.8	891	6	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	86.9335378320703	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATTTATTTTTTAATGGC	NA	False	NA	NA	False	NA	NA	NA	121940292	121952694	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_121940329_121941010_121941144_121944284_121944339_121948913_121949060_121949447_121949676_121952400
transcript_73304.known	chr5	+	3294	19	FSM	ENSMUSG00000042605.17	ENSMUST00000161064.8	3294	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	62.3418492895383	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCCAGTTAGTGTGTGTT	NA	False	NA	3	True	TTTAAA	-6	NA	121887258	121953012	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_121887293_121910729_121910852_121915432_121915525_121915970_121916169_121917480_121917660_121919395_121919606_121921919_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935855_121940143_121940329_121941010_121941144_121948913_121949060_121949447_121949676_121952400
transcript_73305.known	chr5	+	2368	4	FSM	ENSMUSG00000044134.10	ENSMUST00000056654.8	2368	4	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	9.62635271879577	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATGGCTGGGTGTATTA	5424	False	NA	-1	True	AATAAA	-10	NA	121987057	121992662	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_121987188_121988532_121988610_121989230_121989343_121990613
transcript_73306.known	chr5	+	2335	3	FSM	ENSMUSG00000044134.10	ENSMUST00000198271.5	2335	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	19.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATCCACAGTTGATATAT	5413	False	NA	32	True	AATAAA	-43	NA	121987046	121992695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_121987188_121989230_121989343_121990613
transcript_73308.known	chr5	+	662	7	FSM	ENSMUSG00000013936.13	ENSMUST00000014080.13	662	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	1.91485421551268	181	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTGACCATTGGCTCAT	3605	False	NA	NA	False	AATAAA	-21	NA	122239013	122244917	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_122239093_122239811_122239902_122240758_122240835_122241893_122241999_122242889_122242969_122243050_122243100_122244733
transcript_73314.known	chr5	+	1442	8	FSM	ENSMUSG00000004455.17	ENSMUST00000086294.11	1442	8	0	0	0	0	multi-exon	FALSE	canonical	3	517	junction_7	836.265410461711	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCGTGTCTTTCTGTCAGCA	NA	False	NA	3	True	ATTAAA	-19	NA	122296418	122313336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_122296679_122306237_122306370_122306981_122307213_122309884_122309990_122310794_122311019_122311208_122311344_122312117_122312179_122313042
transcript_73315.known	chr5	+	2384	7	FSM	ENSMUSG00000004455.17	ENSMUST00000102528.11	2384	7	0	0	0	0	multi-exon	FALSE	canonical	3	2504	junction_1	178.873092815363	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCGTGTCTTTCTGTCAGCA	NA	False	NA	3	True	ATTAAA	-19	NA	122296340	122313336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_122296679_122306237_122306370_122306981_122307213_122309884_122309990_122310794_122311019_122311208_122311344_122312117
transcript_73317.known	chr5	-	5717	14	FSM	ENSMUSG00000038593.19	ENSMUST00000111738.8	5717	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_4	9.03379584978658	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGATGGCCT	NA	False	NA	NA	False	NA	NA	NA	122402523	122375910	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_122379899_122380668_122380789_122383563_122383727_122384547_122384689_122385594_122385681_122385982_122386109_122386911_122387047_122388509_122388531_122389674_122389785_122392546_122392647_122395532_122395685_122396897_122397029_122399469_122399591_122402200
transcript_73320.nic	chr5	+	2969	8	NIC	ENSMUSG00000064267.14	novel	2805	7	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	18.6153327191565	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATCGGCTCCTTTTTGTT	NA	False	NA	28	True	AATAAA	-39	NA	122344847	122380360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_122345220_122348404_122348456_122354294_122354427_122371482_122371756_122375743_122375849_122376468_122376701_122378276_122378390_122378669
transcript_73321.known	chr5	+	2790	8	FSM	ENSMUSG00000064267.14	ENSMUST00000072602.14	2790	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	20.2887321698825	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATCGGCTCCTTTTTGTT	NA	False	NA	28	True	AATAAA	-39	NA	122347791	122380360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_122347985_122348404_122348456_122354294_122354427_122371482_122371756_122375743_122375849_122376468_122376701_122378276_122378390_122378669
transcript_73325.known	chr5	-	2371	13	FSM	ENSMUSG00000038569.14	ENSMUST00000117263.8	2371	13	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_11	5.93190525885234	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAGTGCTTACATTGCTT	9993	False	NA	NA	False	TATAAA	-21	NA	122492295	122461285	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_122462288_122463413_122463528_122463943_122464043_122469531_122469761_122471358_122471479_122472324_122472390_122472472_122472580_122477794_122477902_122482260_122482361_122489321_122489437_122489623_122489774_122490608_122490678_122492201
transcript_73329.known	chr5	-	1631	11	FSM	ENSMUSG00000038569.14	ENSMUST00000049009.7	1631	11	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_9	5.37494186015067	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGGTCATTTTATA	9992	False	NA	NA	False	AATAAA	-17	NA	122492296	122463570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_122464043_122469531_122469761_122471358_122471479_122472324_122472390_122472472_122472580_122477794_122477902_122482260_122482361_122489321_122489437_122489623_122489774_122490606_122490678_122492201
transcript_7333.nnic	chr10	-	726	3	Fusion	ENSMUSG00000093573.2_ENSMUSG00000093489.2	novel	698	3	NA	NA	-11183	4	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTGTCAGTGTGTTTGGG	NA	False	NA	NA	False	NA	NA	NA	60898862	60874003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr10_-_60874446_60887203_60887370_60898744
transcript_73335.known	chr5	-	1726	1	FSM	ENSMUSG00000038569.14	ENSMUST00000200653.2	1726	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGGTGTGCCTCAAATCC	9989	False	NA	NA	False	NA	NA	NA	122492283	122490557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_122490600_122492300
transcript_7334.known	chr10	+	789	4	FSM	ENSMUSG00000020098.8	ENSMUST00000020298.8	789	4	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_3	1.24721912892465	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCAGCTTCTAGAACCTTC	NA	False	NA	6	True	AATAAA	-17	NA	60925137	60930103	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_60925196_60927842_60927975_60928382_60928464_60929585
transcript_73344.known	chr5	-	1388	7	FSM	ENSMUSG00000029463.6	ENSMUST00000031419.6	1388	7	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_4	23.7235232534199	1189	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAATTTTAAATTATCTTT	NA	False	NA	-20	True	ATTAAA	-21	NA	122510427	122502642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_122502983_122504376_122504460_122505410_122505583_122505661_122505792_122507579_122507702_122508577_122508637_122509945
transcript_7336.known	chr10	+	361	3	FSM	ENSMUSG00000020098.8	ENSMUST00000218005.2	361	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	30	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTGACCACCACCTCCCT	NA	False	NA	NA	False	NA	NA	NA	60925109	60929779	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_60925196_60928382_60928464_60929585
transcript_73363.known	chr5	+	1014	5	FSM	ENSMUSG00000029462.19	ENSMUST00000118830.8	1014	5	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_1	833.067074130289	5411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTTTCTTGAAAACCTGT	695	False	NA	17	True	AATAAA	-17	NA	122492447	122501349	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_122492540_122494856_122494869_122498075_122498268_122500098_122500335_122500867
transcript_73364.known	chr5	+	713	3	FSM	ENSMUSG00000029462.19	ENSMUST00000118765.8	713	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	716	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTACCTTCCATTTAGAC	732	False	NA	1	True	AATAAA	-1	NA	122492484	122501333	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_122492540_122498075_122498268_122500867
transcript_73365.known	chr5	+	874	4	FSM	ENSMUSG00000029462.19	ENSMUST00000111729.10	874	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	1030.830194013	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCGCATGAAGAGAAAGAATC	732	False	NA	-58	True	NA	NA	NA	122492484	122501274	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_122492540_122498091_122498268_122500098_122500335_122500867
transcript_73366.known	chr5	+	1592	8	FSM	ENSMUSG00000029464.11	ENSMUST00000031420.11	1592	8	0	0	0	0	multi-exon	FALSE	canonical	3	424	junction_4	35.5154464814327	1776	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTGAGGTTTGTAAA	8039	False	NA	NA	False	AATAAA	-42	NA	122510513	122520965	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_122510720_122511973_122512083_122516529_122516698_122518043_122518169_122519252_122519369_122519460_122519558_122520110_122520240_122520323
transcript_7337.known	chr10	-	4102	15	FSM	ENSMUSG00000020097.15	ENSMUST00000122259.8	4102	15	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_14	78.4471744785844	548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGGATGGTTGATTTTT	NA	False	NA	-2	True	AATAAA	-16	NA	60983423	60934420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_60936788_60937459_60937581_60938346_60938494_60938899_60939139_60940241_60940392_60941200_60941300_60942043_60942150_60943355_60943445_60947940_60948070_60949216_60949294_60949788_60949937_60953473_60953542_60959087_60959254_60982036_60982111_60983301
transcript_73370.known	chr5	+	899	7	FSM	ENSMUSG00000029465.15	ENSMUST00000102525.11	899	7	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_4	26.4638117687784	8016	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACACTGTACCGTGTATG	4488	False	NA	38	True	ATTAAA	-22	NA	122529940	122544242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_122530061_122534879_122534980_122539709_122539787_122541421_122541491_122542186_122542314_122543146_122543242_122543931
transcript_73371.known	chr5	-	4486	20	FSM	ENSMUSG00000029467.16	ENSMUST00000031423.10	4486	20	0	0	0	0	multi-exon	FALSE	canonical	3	1036	junction_17	105.58760524925	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACAGAGAAAAATAACTGTC	7277	False	NA	-28	True	AATAAA	-13	NA	122640288	122594402	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_122595490_122595574_122595693_122596150_122596285_122596510_122596597_122597510_122597714_122598038_122598260_122598703_122599040_122599628_122599848_122599925_122600049_122604012_122604145_122604890_122604994_122605769_122605859_122607412_122607878_122609230_122609317_122611272_122611354_122627300_122627440_122629743_122629849_122638793_122638877_122638993_122639012_122639630
transcript_73373.known	chr5	-	615	6	FSM	ENSMUSG00000029467.16	ENSMUST00000197415.5	615	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	441.541662813375	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTTTCATATATTTAAAAA	7881	False	NA	NA	False	TTTAAA	-5	NA	122639684	122626944	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_122627161_122627300_122627440_122629743_122629849_122638793_122638877_122638993_122639012_122639630
transcript_73374.known	chr5	-	2950	19	FSM	ENSMUSG00000029469.15	ENSMUST00000031426.14	2950	19	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_3	9.90510530540242	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTCTTTTTACTTCATT	1243	False	NA	NA	False	ATTAAA	-20	NA	122752581	122688266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_122689267_122693559_122693606_122697217_122697304_122697759_122697832_122698721_122698809_122705323_122705414_122706973_122707103_122710702_122710853_122729142_122729290_122731112_122731209_122732587_122732752_122738502_122738588_122740330_122740442_122740747_122740814_122745030_122745121_122747235_122747417_122748140_122748245_122749005_122749171_122752500
transcript_73376.known	chr5	+	712	4	FSM	ENSMUSG00000029468.18	ENSMUST00000086247.6	712	4	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_3	10.4029910228848	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACCCAGAATTGGTTTAT	NA	False	NA	NA	False	NA	NA	NA	122782071	122793325	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_122782262_122790789_122790959_122792223_122792293_122793041
transcript_73378.known	chr5	+	2702	12	FSM	ENSMUSG00000029470.16	ENSMUST00000031429.14	2702	12	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_5	9.63207451716048	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTGGGCTGTTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	122845606	122867801	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_122845851_122852461_122852610_122856375_122856448_122856563_122856637_122857192_122857290_122862656_122862738_122863052_122863195_122863292_122863430_122865260_122865355_122865461_122865528_122865807_122865904_122866349
transcript_7338.known	chr10	-	4070	15	FSM	ENSMUSG00000020097.15	ENSMUST00000092498.12	4070	15	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_14	85.0811437417726	566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGGATGGTTGATTTTT	NA	False	NA	-2	True	AATAAA	-16	NA	60983453	60934420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_60936788_60937459_60937581_60938346_60938494_60938899_60939139_60940241_60940392_60941200_60941300_60942043_60942150_60943355_60943445_60947940_60948070_60949216_60949294_60949788_60949937_60953473_60953542_60959087_60959254_60982036_60982111_60983363
transcript_73381.known	chr5	+	1111	11	FSM	ENSMUSG00000029470.16	ENSMUST00000142664.3	1111	11	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_9	29.8636903278881	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATTTCAATCCCACTCAG	NA	False	NA	NA	False	NA	NA	NA	122845716	122866386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_122845851_122852461_122852610_122856375_122856448_122856563_122856637_122857192_122857290_122862656_122862738_122863052_122863195_122863292_122863430_122865260_122865355_122865807_122865904_122866349
transcript_73382.known	chr5	+	1887	11	FSM	ENSMUSG00000029470.16	ENSMUST00000081554.13	1887	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	30.411182153938	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCCTTGTCTGTGCTGCCT	NA	False	NA	15	True	ATTAAA	-20	NA	122845646	122867107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_122845851_122852461_122852610_122856375_122856448_122856563_122856637_122857192_122857290_122863052_122863195_122863292_122863430_122865260_122865355_122865461_122865528_122865807_122865904_122866349
transcript_73383.nic	chr5	+	1841	11	NIC	ENSMUSG00000029470.16	novel	2702	12	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	28.3167794778997	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCCTTGTCTGTGCTGCCT	NA	False	NA	15	True	ATTAAA	-20	NA	122845625	122867107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_122845851_122856375_122856448_122856563_122856637_122857192_122857290_122862656_122862738_122863052_122863195_122863292_122863430_122865260_122865355_122865461_122865528_122865807_122865904_122866349
transcript_73384.known	chr5	+	1030	10	FSM	ENSMUSG00000029470.16	ENSMUST00000139631.8	1030	10	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_8	41.2499158248299	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATTTCAATCCCACTCAG	NA	False	NA	NA	False	NA	NA	NA	122845716	122866386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_122845851_122852461_122852610_122856375_122856448_122856563_122856637_122857192_122857290_122863052_122863195_122863292_122863430_122865260_122865355_122865807_122865904_122866349
transcript_73387.known	chr5	-	2751	16	FSM	ENSMUSG00000029471.14	ENSMUST00000200109.5	2751	16	0	0	0	0	multi-exon	TRUE	canonical	3	10	junction_2	25.1434992702996	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAACCAAAAACAAAAA	4699	False	NA	NA	False	NA	NA	NA	122917396	122871250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_122872309_122875495_122875597_122880162_122880292_122881932_122882021_122882120_122882195_122883770_122883825_122884312_122884513_122886016_122886106_122886240_122886263_122888077_122888115_122891761_122891896_122894665_122894718_122895622_122895677_122897015_122897064_122901836_122902366_122917314
transcript_73391.nic	chr5	-	2024	13	ISM	ENSMUSG00000029471.14	ENSMUST00000199830.5	3139	14	24	2732	7	-2732	5prime_fragment	FALSE	canonical	3	28	junction_4	15.8190725251374	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTGGAATGTCACTCAGT	4657	False	NA	-22	True	AATAAA	-16	NA	122917438	122881413	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_122882021_122882120_122882195_122883770_122883825_122884312_122884513_122886016_122886106_122886240_122886263_122888077_122888115_122891761_122891896_122894665_122894718_122895622_122895677_122897015_122897064_122901836_122902366_122917314
transcript_73393.known	chr5	-	1084	5	FSM	ENSMUSG00000029471.14	ENSMUST00000196742.2	1084	5	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	7.3824115301167	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGAGTTAGCAGTGTCTT	4707	False	NA	0	True	AATAAA	-21	NA	122917388	122894338	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_122894718_122895622_122895677_122897015_122897064_122901836_122902366_122917314
transcript_73396.known	chr5	-	2760	17	FSM	ENSMUSG00000029472.14	ENSMUST00000086216.9	2760	17	0	0	0	0	multi-exon	TRUE	canonical	3	1165	junction_8	284.126264845403	10383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGCATCCTCTTAAATC	NA	False	NA	NA	False	AATAAA	-2	NA	122959402	122925521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938696_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
transcript_73397.known	chr5	-	2404	17	FSM	ENSMUSG00000029472.14	ENSMUST00000200645.5	2404	17	0	0	0	0	multi-exon	FALSE	canonical	3	855	junction_8	345.39967790952	11219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGTCTGAAGTGGGTTT	NA	False	NA	-27	True	AATAAA	-12	NA	122959357	122925793	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938657_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
transcript_73398.known	chr5	-	2422	17	FSM	ENSMUSG00000029472.14	ENSMUST00000196640.5	2422	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	562.145162385793	13707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGGGTTTTTTTTTATTT	NA	False	NA	-17	True	AATAAA	-22	NA	122959350	122925783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_122926082_122926364_122926504_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938696_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
transcript_73399.known	chr5	-	2413	17	FSM	ENSMUSG00000029472.14	ENSMUST00000199406.5	2413	17	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_3	528.705609099951	12120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGAAGTGGGTTTTTTT	NA	False	NA	-23	True	AATAAA	-16	NA	122959343	122925789	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_122926082_122926364_122926528_122929670_122929799_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938696_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
transcript_7340.known	chr10	-	4282	20	FSM	ENSMUSG00000020092.10	ENSMUST00000020289.10	4282	20	0	0	0	0	multi-exon	FALSE	canonical	3	320	junction_14	26.6759563689748	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTTGCTGATTGGTCTT	NA	False	NA	-1	True	ATTAAA	-22	NA	61219309	61155434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_61157022_61159002_61159159_61174977_61175119_61176709_61176782_61176990_61177132_61178097_61178281_61178572_61178729_61178819_61178937_61179406_61179536_61179882_61179979_61182539_61182645_61182816_61182917_61183201_61183354_61184086_61184163_61184312_61184474_61185919_61186085_61186674_61186855_61188711_61188815_61191592_61191816_61219070
transcript_73400.known	chr5	-	3376	16	FSM	ENSMUSG00000029472.14	ENSMUST00000196423.5	3376	16	0	0	0	0	multi-exon	FALSE	canonical	3	855	junction_7	355.400894140062	13712	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGGGTTTTTTTTTATTT	NA	False	NA	-17	True	AATAAA	-22	NA	122959343	122925783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122938657_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
transcript_73401.known	chr5	-	2383	17	FSM	ENSMUSG00000029472.14	ENSMUST00000197719.5	2383	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	591.121150732868	13626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGGGTTTTTTTTTATTT	NA	False	NA	-17	True	AATAAA	-22	NA	122959350	122925783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_122926082_122926364_122926504_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938657_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
transcript_73402.nic	chr5	-	3652	13	NIC	ENSMUSG00000029475.18	novel	5180	23	NA	NA	-37	0	intron_retention	FALSE	canonical	3	58	junction_12	99.7441170640599	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACACTGTGTTTGAGGGT	NA	False	NA	NA	False	TATAAA	-21	NA	123060207	123008730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_123009961_123016497_123016717_123017307_123017470_123017551_123017716_123018235_123018916_123019082_123019122_123019699_123019814_123020026_123020288_123020464_123020552_123021381_123021526_123026592_123026818_123059447_123059535_123059967
transcript_73404.known	chr5	-	3532	12	FSM	ENSMUSG00000029475.18	ENSMUST00000031435.14	3532	12	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_11	40.2726246663991	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACACTGTGTTTGAGGGT	8594	False	NA	NA	False	TATAAA	-21	NA	123038418	123008730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_123009961_123016497_123016717_123017307_123017470_123017551_123017716_123018235_123018916_123019082_123019122_123019699_123019814_123020026_123020288_123020464_123020552_123021381_123021526_123026592_123026818_123038211
transcript_73405.known	chr5	+	4440	6	FSM	ENSMUSG00000029474.8	ENSMUST00000031434.8	4440	6	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_1	16.3389106124001	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGGCTGCAGATGGTGTGTG	514	False	NA	NA	False	ACTAAA	-16	NA	122988110	123009354	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_122988362_122999751_122999971_123002049_123002458_123004864_123004970_123005182_123005385_123006099
transcript_73406.nic	chr5	+	1765	5	NIC	ENSMUSG00000029474.8	novel	4440	6	NA	NA	1	-2346	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	85.4005269304587	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTAGTTTAATATTGTT	624	False	NA	9	True	AATAAA	-16	NA	122988220	123007008	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_122988362_123002049_123002458_123004864_123004970_123005182_123005385_123006099
transcript_73409.known	chr5	+	1875	2	FSM	ENSMUSG00000049686.15	ENSMUST00000121652.8	1875	2	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTACCGAGTTGTTTCTT	4874	False	NA	NA	False	ATTAAA	-2	NA	123153136	123168519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_123153630_123167137
transcript_73416.known	chr5	+	2164	12	FSM	ENSMUSG00000054434.15	ENSMUST00000067505.15	2164	12	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_3	11.7768508046945	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCCCTGCCCAGCCTGC	NA	False	NA	NA	False	NA	NA	NA	123214337	123255812	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_123214559_123236237_123236357_123237899_123238017_123239687_123239748_123240316_123240413_123242484_123242575_123252164_123252231_123252630_123252693_123253162_123253256_123253723_123253789_123254264_123254334_123254706
transcript_73418.known	chr5	+	2597	6	FSM	ENSMUSG00000029440.16	ENSMUST00000100729.9	2597	6	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_2	18.6868938028769	978	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCCTCTTGGGATCAGC	NA	False	NA	NA	False	TTTAAA	-13	NA	123366252	123388194	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_123366508_123372656_123372760_123377604_123377814_123379894_123379997_123384256_123384346_123386355
transcript_73423.nnic	chr5	+	880	5	NIC	ENSMUSG00000029440.16	novel	2597	6	NA	NA	10	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_1	81.8183964643649	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACGTCTTGTGCAAATTA	NA	False	NA	17	True	ATTAAA	-18	NA	123366262	123386590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_123366508_123377604_123377814_123379894_123379997_123384256_123384346_123386355
transcript_73427.known	chr5	+	774	1	FSM	ENSMUSG00000029440.16	ENSMUST00000196137.2	774	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	123366320	123367094	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_123366300_123367100
transcript_73428.known	chr5	+	735	5	FSM	ENSMUSG00000029440.16	ENSMUST00000197809.2	735	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	82.7930401664294	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACGTCTTGTGCAAATTA	NA	False	NA	17	True	ATTAAA	-18	NA	123372656	123386590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_123372760_123377604_123377814_123379894_123379997_123384259_123384346_123386355
transcript_73431.known	chr5	-	333	1	FSM	ENSMUSG00000094664.2	ENSMUST00000148282.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	350	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	4097	False	NA	NA	False	NA	NA	NA	123393876	123393543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_123393500_123393900
transcript_73432.known	chr5	+	4718	6	FSM	ENSMUSG00000029438.10	ENSMUST00000031391.9	4718	6	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	4.53431361950185	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACGAATTGTAATGTAAATAA	NA	False	NA	NA	False	NA	NA	NA	123482510	123513055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_123482785_123489929_123490012_123494003_123494101_123499253_123499422_123507395_123507518_123509080
transcript_73444.known	chr5	-	1576	6	FSM	ENSMUSG00000029433.17	ENSMUST00000111587.10	1576	6	0	0	0	0	multi-exon	FALSE	canonical	3	603	junction_3	53.1902246658162	884	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAGTTTTCAGAATTGTT	8922	False	NA	-12	True	AATAAA	-25	NA	123662239	123649767	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_123650771_123655799_123655897_123656017_123656129_123658103_123658236_123661317_123661445_123662133
transcript_73445.known	chr5	-	1663	5	FSM	ENSMUSG00000029433.17	ENSMUST00000139398.8	1663	5	0	0	0	0	multi-exon	FALSE	canonical	3	603	junction_2	57.6649807075317	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAGTTTTCAGAATTGTT	8956	False	NA	-12	True	AATAAA	-25	NA	123662205	123649767	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_123650771_123655799_123656129_123658103_123658236_123661317_123661445_123662133
transcript_73446.known	chr5	-	681	5	FSM	ENSMUSG00000029433.17	ENSMUST00000031385.7	681	5	0	0	0	0	multi-exon	FALSE	canonical	3	603	junction_2	56.3493566955294	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCATAACATTATTTCCTT	8965	False	NA	NA	False	NA	NA	NA	123662196	123655648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_123655897_123656017_123656129_123658103_123658236_123661317_123661445_123662133
transcript_73447.known	chr5	-	719	6	FSM	ENSMUSG00000029433.17	ENSMUST00000111586.8	719	6	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_1	270.536208297522	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTCAGAGAAAAATCTTAA	8965	False	NA	NA	False	ATTAAA	-14	NA	123662196	123654326	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_123654516_123655799_123655897_123656017_123656129_123658103_123658236_123661317_123661445_123662133
transcript_73448.known	chr5	-	2588	4	FSM	ENSMUSG00000029433.17	ENSMUST00000145152.8	2588	4	0	0	0	0	multi-exon	FALSE	canonical	3	603	junction_1	60.8659729788875	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATACAGACTAAAGGTTT	8962	False	NA	NA	False	NA	NA	NA	123662199	123653865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_123656129_123658103_123658236_123661317_123661445_123662133
transcript_73449.known	chr5	-	3386	7	FSM	ENSMUSG00000029433.17	ENSMUST00000125652.8	3386	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	250.348701259308	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGCAGTGTGGCTGTCG	8955	False	NA	NA	False	AATAAA	-22	NA	123662206	123647827	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_123649282_123649378_123650771_123655799_123655897_123656017_123656129_123658103_123658236_123661317_123661445_123662133
transcript_7345.known	chr10	+	2095	3	FSM	ENSMUSG00000037171.7	ENSMUST00000049339.7	2095	3	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_2	2.5	998	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTCTCACAATGTGTT	NA	False	NA	20	True	ATTAAA	-17	NA	61253750	61261117	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_61254275_61258760_61259477_61260262
transcript_73450.known	chr5	-	4235	13	FSM	ENSMUSG00000029434.13	ENSMUST00000031388.13	4235	13	0	0	0	0	multi-exon	TRUE	canonical	3	140	junction_1	30.3840007240653	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGCCCTGCCGGCCTGAC	10000	False	NA	NA	False	AAAAAG	-3	NA	123711101	123666721	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_123669285_123669887_123670057_123671920_123672059_123673276_123673415_123674595_123674664_123685064_123685192_123696676_123696877_123701488_123701664_123703021_123703139_123707482_123707670_123708917_123709046_123709539_123709606_123710942
transcript_73452.nic	chr5	-	1259	8	NIC	ENSMUSG00000029434.13	novel	532	6	NA	NA	19	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	74.1113337885533	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGGTGTGTTCCTATGTAA	9986	False	NA	NA	False	ATTAAA	-18	NA	123711082	123692827	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_123693074_123696676_123696877_123701488_123701664_123703021_123703139_123707482_123707670_123708917_123709046_123709539_123709606_123710942
transcript_73455.known	chr5	-	4286	14	FSM	ENSMUSG00000029427.12	ENSMUST00000031376.12	4286	14	0	0	0	0	multi-exon	FALSE	non_canonical	2	263	junction_13	50.4357344906314	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTGTATCCAAGTTCCT	6397	False	NA	NA	False	AATAAA	-13	NA	123859107	123836364	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_123839186_123840625_123840744_123841055_123841143_123842585_123842705_123845331_123845475_123846054_123846198_123846634_123846696_123847257_123847324_123847444_123847549_123852128_123852207_123852687_123852794_123855046_123855122_123857554_123857596_123858783
transcript_73457.nic	chr5	-	1127	8	ISM	ENSMUSG00000029427.12	ENSMUST00000031376.12	4286	14	12	9986	12	0	5prime_fragment	FALSE	non_canonical	2	263	junction_7	50.4364623530822	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGTCTGCCCACTTTG	6409	False	NA	NA	False	AATAAA	-35	NA	123859095	123846350	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_123846696_123847257_123847324_123847444_123847549_123852128_123852207_123852687_123852794_123855046_123855122_123857554_123857596_123858783
transcript_73472.known	chr5	-	2344	12	FSM	ENSMUSG00000029422.16	ENSMUST00000050827.14	2344	12	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_7	200.336700053759	546	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCATTGTATGCTATTTGC	4346	False	NA	NA	False	AATAAA	-15	NA	123887452	123866488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878948_123880841_123880920_123881700_123881742_123883017_123883175_123883559_123883653_123887351
transcript_73477.known	chr5	-	1685	11	FSM	ENSMUSG00000029422.16	ENSMUST00000182955.8	1685	11	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_10	161.696753214157	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATATTTTTTAGTTCATGA	4364	False	NA	NA	False	ATTAAA	-22	NA	123887434	123867029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123881700_123881742_123883017_123883175_123883559_123883653_123887351
transcript_73480.known	chr5	-	1665	11	FSM	ENSMUSG00000029422.16	ENSMUST00000182489.8	1665	11	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_7	204.091156104325	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAATCAGGTTCAACCCAC	4355	False	NA	NA	False	NA	NA	NA	123887443	123867080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878948_123881700_123881742_123883017_123883175_123883559_123883653_123887351
transcript_73496.known	chr5	-	4223	8	FSM	ENSMUSG00000029422.16	ENSMUST00000111515.8	4223	8	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_3	206.801788173692	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAAAACAGAACCCAAA	4323	False	NA	NA	False	NA	NA	NA	123887475	123871431	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_123874745_123877554_123877759_123878734_123878948_123880841_123880920_123881700_123881742_123883017_123883175_123883559_123883653_123887351
transcript_73498.known	chr5	-	2270	11	FSM	ENSMUSG00000029422.16	ENSMUST00000057795.12	2270	11	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_7	167.947640650293	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTCCATTGTATGCTAT	4323	False	NA	NA	False	AATAAA	-11	NA	123887475	123866492	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878948_123880841_123880920_123881700_123881742_123883017_123883175_123887351
transcript_73499.known	chr5	-	1609	8	FSM	ENSMUSG00000029422.16	ENSMUST00000182948.8	1609	8	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_7	153.703663998392	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTGGTGTTAATTTAAG	NA	False	NA	-8	True	AATAAA	-13	NA	123880896	123866786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123880841
transcript_7350.known	chr10	+	3216	5	FSM	ENSMUSG00000037151.9	ENSMUST00000049242.9	3216	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	4.84767985741633	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGCTGGTGCTTGGTGTCT	1774	False	NA	3	True	AATAAA	-20	NA	61311579	61418570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_61311669_61318114_61318262_61362838_61362989_61383826_61383995_61415908
transcript_73500.known	chr5	-	1595	10	FSM	ENSMUSG00000029422.16	ENSMUST00000182309.8	1595	10	0	0	0	0	multi-exon	FALSE	canonical	3	403	junction_7	46.2523939987681	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACCCACTTCCATTAAAC	4321	False	NA	NA	False	NA	NA	NA	123887477	123867069	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123881700_123881742_123883017_123883175_123887351
transcript_73501.known	chr5	-	1980	3	FSM	ENSMUSG00000029422.16	ENSMUST00000183253.8	1980	3	0	0	0	0	multi-exon	FALSE	canonical	3	434	junction_2	57.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4354	False	NA	NA	False	NA	NA	NA	123887444	123880011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_123881742_123883017_123883175_123887351
transcript_73502.known	chr5	+	6961	64	FSM	ENSMUSG00000029414.12	ENSMUST00000031366.12	6961	64	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_8	72.5550989140863	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGTTTCTTGTGTCATT	NA	False	NA	29	True	AATAAA	-21	NA	123887788	123959656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_123887888_123891885_123892061_123893736_123893858_123895861_123895978_123896505_123896585_123897083_123897162_123898395_123898431_123898665_123898780_123900575_123900670_123901857_123901911_123902177_123902294_123903059_123903115_123903974_123904074_123905832_123905877_123905981_123906048_123906354_123906431_123907675_123907802_123907915_123908006_123909150_123909205_123910148_123910211_123911999_123912112_123913765_123913910_123914455_123914513_123914601_123914704_123916094_123916212_123916307_123916452_123917690_123917790_123919012_123919117_123919208_123919309_123919716_123919852_123920904_123921025_123922243_123922317_123923472_123923541_123924097_123924379_123924951_123925125_123925569_123925668_123927080_123927220_123928177_123928235_123928955_123929120_123929562_123929668_123932206_123932336_123934098_123934216_123934575_123934686_123935676_123935882_123937863_123937954_123939857_123940030_123940114_123940174_123940284_123940502_123941044_123941119_123941366_123941578_123941690_123941801_123945323_123945371_123947097_123947177_123948875_123948995_123949368_123949505_123950072_123950169_123950693_123950751_123952769_123952825_123953028_123953093_123954729_123954860_123956513_123956604_123957058_123957205_123957932_123958024_123959443
transcript_73509.known	chr5	+	622	3	FSM	ENSMUSG00000061882.13	ENSMUST00000166983.3	622	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGTGTGTTCTGTCCA	NA	False	NA	NA	False	ATTAAA	-27	NA	124068751	124074708	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_124068924_124072134_124072328_124074451
transcript_73510.known	chr5	+	2339	8	FSM	ENSMUSG00000023106.16	ENSMUST00000023869.15	2339	8	0	0	0	0	multi-exon	FALSE	canonical	3	1477	junction_4	100.760982082372	3366	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTCGCTAACTGAATTTG	8978	False	NA	NA	False	AATGAA	-2	NA	124045237	124066898	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_124045430_124046162_124046278_124053253_124053274_124055262_124055348_124060242_124060327_124062793_124062911_124065060_124065201_124065312
transcript_73511.known	chr5	-	2522	4	FSM	ENSMUSG00000066278.7	ENSMUST00000040967.9	2522	4	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_3	15.8394724940223	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTGTGTTTCTCTCAT	2236	False	NA	-1	True	AATAAA	-20	NA	124170333	124142703	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_124144802_124145671_124145755_124148750_124148923_124170164
transcript_73515.known	chr5	+	1596	7	FSM	ENSMUSG00000023707.14	ENSMUST00000024470.13	1596	7	0	0	0	0	multi-exon	TRUE	canonical	3	59	junction_5	17.423642940939	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTTTGCTATTATTTAA	NA	False	NA	12	True	TATAAA	-17	NA	124250359	124253546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_124250530_124250851_124250909_124251280_124251395_124251491_124251592_124252127_124252256_124252450_124252709_124252777
transcript_73517.known	chr5	+	1474	7	FSM	ENSMUSG00000023707.14	ENSMUST00000119269.6	1474	7	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_5	31.3421973277773	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACCCCTCTGTTTGCTAT	NA	False	NA	5	True	TATAAA	-10	NA	124250383	124253539	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_124250530_124250851_124250909_124251280_124251395_124251491_124251592_124252127_124252256_124252541_124252709_124252777
transcript_73520.known	chr5	+	818	6	FSM	ENSMUSG00000023707.14	ENSMUST00000198770.2	818	6	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	30.8506077735918	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGACTTGAGCCTGGTTC	NA	False	NA	-93	True	NA	NA	NA	124250493	124253030	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_124250530_124250851_124250909_124251280_124251395_124251491_124251592_124252450_124252709_124252777
transcript_73522.known	chr5	+	600	6	FSM	ENSMUSG00000023707.14	ENSMUST00000198505.2	600	6	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_4	36.149688795341	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATCCTGCACCGTGGCGGC	NA	False	NA	NA	False	NA	NA	NA	124250419	124252829	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_124250530_124250851_124250909_124251280_124251395_124251491_124251592_124252541_124252709_124252777
transcript_73529.nic	chr5	+	1043	6	NIC	ENSMUSG00000029404.16	novel	1192	5	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	229.659399981799	556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGTTGTGTTGCATTT	NA	False	NA	24	True	ATTAAA	-17	NA	124254121	124256259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_124254308_124254496_124254675_124254977_124255257_124255333_124255452_124255892_124255963_124256047
transcript_73533.known	chr5	+	1192	5	FSM	ENSMUSG00000029404.16	ENSMUST00000031351.11	1192	5	0	0	0	0	multi-exon	FALSE	canonical	3	507	junction_1	46.874833333037	1940	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGTTGTGTTGCATTT	NA	False	NA	24	True	ATTAAA	-17	NA	124254161	124256259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_124254675_124254977_124255257_124255333_124255452_124255892_124255963_124256047
transcript_73536.nnic	chr5	+	1163	5	NNC	ENSMUSG00000029404.16	novel	1192	5	NA	NA	-22	0	intron_retention	FALSE	canonical	3	22	junction_1	256.087265399902	518	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGTTGTGTTGCATTT	NA	False	NA	24	True	ATTAAA	-17	NA	124254129	124256259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_124254675_124255038_124255257_124255333_124255452_124255892_124255963_124256047
transcript_73537.known	chr5	+	982	5	FSM	ENSMUSG00000029404.16	ENSMUST00000122394.8	982	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	259.116286635943	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGGTGCCTTTCCTACAG	NA	False	NA	-76	True	NA	NA	NA	124254184	124256159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_124254588_124254977_124255257_124255333_124255452_124255892_124255963_124256047
transcript_73554.known	chr5	-	1197	6	FSM	ENSMUSG00000038126.18	ENSMUST00000149933.8	1197	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	20.5270553173123	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGACTCCTGACTCTTCCC	NA	False	NA	NA	False	AATAAA	-16	NA	124465915	124453251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_124453350_124453435_124453960_124454144_124454235_124458907_124459062_124462936_124463201_124465848
transcript_73557.nic	chr5	-	894	2	ISM	ENSMUSG00000038126.18	ENSMUST00000149933.8	1197	6	-37	9159	-19	-9159	5prime_fragment	FALSE	canonical	3	53	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTGGTAATCTAAATACA	NA	False	NA	NA	False	NA	NA	NA	124465952	124462410	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_124463201_124465848
transcript_73558.nic	chr5	-	385	2	ISM	ENSMUSG00000038126.18	ENSMUST00000149933.8	1197	6	-57	9688	-39	-9688	5prime_fragment	FALSE	canonical	3	53	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGTAAGAGTTGGTTTGAT	NA	False	NA	NA	False	ATTAAA	-39	NA	124465972	124462939	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_124463201_124465848
transcript_73563.known	chr5	+	1677	3	FSM	ENSMUSG00000047635.7	ENSMUST00000077376.3	1677	3	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	7.5	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCATCGAGGAAGCTGTGG	5398	False	NA	17	True	NA	NA	NA	124466160	124479907	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_124466293_124476689_124476999_124478671
transcript_73565.known	chr5	+	1637	2	FSM	ENSMUSG00000047635.7	ENSMUST00000111477.2	1637	2	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCCTGAGTTTAATTCC	5389	False	NA	NA	False	NA	NA	NA	124466151	124478185	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_124466293_124476689
transcript_73567.nnic	chr5	-	1033	4	NNC	ENSMUSG00000029394.12	novel	1315	4	NA	NA	43	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	590.799646430346	48	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGAGGTCTTAAGTGCT	4297	False	NA	2	True	AATAAA	-38	NA	124492691	124483479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_124484218_124486663_124486791_124488140_124488236_124492618
transcript_73568.known	chr5	-	10071	32	FSM	ENSMUSG00000038095.16	ENSMUST00000065263.12	10071	32	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_31	128.473127279141	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGGTGTTGTGGTTTGG	NA	False	NA	49	True	AATAAA	-21	NA	124563977	124506764	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_124512735_124514160_124514355_124516532_124516610_124517347_124517486_124519571_124519665_124519745_124519841_124519921_124520069_124522529_124522605_124524892_124524993_124525381_124525454_124525539_124525653_124526587_124526724_124529984_124530117_124530636_124530813_124530901_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124551247_124551353_124552461_124552591_124563909
transcript_73570.known	chr5	-	2511	18	FSM	ENSMUSG00000038095.16	ENSMUST00000196644.5	2511	18	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_17	149.186374694419	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAAAAAAGAAGAAAAGT	NA	False	NA	NA	False	NA	NA	NA	124564064	124531030	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124551247_124551353_124552461_124552591_124563909
transcript_73573.nic	chr5	-	2433	17	NIC	ENSMUSG00000038095.16	novel	2511	18	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_16	125.514379156334	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATAGATCCAGATTCCATT	NA	False	NA	NA	False	NA	NA	NA	124564073	124531012	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124552461_124552591_124563909
transcript_73578.known	chr5	-	2413	17	FSM	ENSMUSG00000038095.16	ENSMUST00000200474.5	2413	17	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_15	101.972863271314	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATAGATCCAGATTCCATT	NA	False	NA	NA	False	NA	NA	NA	124563656	124531012	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548443_124552461_124552591_124563509
transcript_73579.known	chr5	-	2100	15	FSM	ENSMUSG00000038095.16	ENSMUST00000196329.5	2100	15	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_14	133.161556013738	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAATAAAATAAAGAA	NA	False	NA	NA	False	NA	NA	NA	124564020	124533985	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124552461_124552591_124563909
transcript_73580.known	chr5	+	1789	7	FSM	ENSMUSG00000049327.18	ENSMUST00000199798.5	1789	7	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	269.798330033544	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATCAAAAAAAGAAA	NA	False	NA	NA	False	AATAAA	-14	NA	124578029	124599574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_124578079_124585276_124585434_124588723_124588944_124589348_124589437_124595121_124595182_124597837_124598029_124598550
transcript_73583.known	chr5	-	1391	4	FSM	ENSMUSG00000029401.9	ENSMUST00000031347.8	1391	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	3.55902608401044	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAACGCATGTGTATCCAA	NA	False	NA	48	True	AATAAA	-24	NA	124616429	124601327	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_124601875_124606649_124606755_124607760_124607913_124615842
transcript_73590.known	chr5	+	1115	2	FSM	ENSMUSG00000029402.9	ENSMUST00000031349.9	1115	2	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	0	559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTTGAGGTGGGGTTTGT	2220	False	NA	10	True	AATAAA	-24	NA	124621196	124629187	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_124621310_124628185
transcript_73592.known	chr5	+	449	2	FSM	ENSMUSG00000029402.9	ENSMUST00000136567.2	449	2	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCGTGGACTATGAGCTAG	2288	False	NA	NA	False	NA	NA	NA	124621264	124628553	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_124621346_124628185
transcript_73593.known	chr5	+	1181	2	FSM	ENSMUSG00000029402.9	ENSMUST00000111453.2	1181	2	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTCCCTTTCTCACACCT	2544	False	NA	-7	True	AATAAA	-7	NA	124621520	124629170	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_124621717_124628185
transcript_73594.known	chr5	-	2249	7	FSM	ENSMUSG00000029392.13	ENSMUST00000062153.12	2249	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_4	6.39661368746516	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTTCCTGTGTGCCTTT	NA	False	NA	2	True	NA	NA	NA	124669454	124631142	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_124631908_124639902_124639996_124641617_124641797_124652581_124652807_124653580_124653700_124659313_124659465_124668737
transcript_73595.known	chr5	-	682	4	FSM	ENSMUSG00000029392.13	ENSMUST00000200202.2	682	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	16.5193489244852	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTCGAAACCCTTAGGAC	NA	False	NA	NA	False	NA	NA	NA	124642034	124631599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_124631908_124639902_124639996_124641617_124641797_124641932
transcript_73600.known	chr5	+	2074	4	FSM	ENSMUSG00000029390.14	ENSMUST00000060226.11	2074	4	0	0	0	0	multi-exon	FALSE	canonical	3	3477	junction_2	89.3395520223577	849	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTGTTTTATATTAATG	NA	False	NA	12	True	AATAAA	-22	NA	124678757	124688569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_124679105_124681034_124681228_124684958_124685067_124687143
transcript_73601.known	chr5	+	425	1	FSM	ENSMUSG00000029390.14	ENSMUST00000197112.2	425	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATATACAGTAGTTTTA	NA	False	NA	NA	False	NA	NA	NA	124679398	124679823	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_124679400_124679800
transcript_73602.known	chr5	+	2737	14	FSM	ENSMUSG00000029389.18	ENSMUST00000111438.2	2737	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	29.7024693651981	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTATCATTTTTTTTCTCC	NA	False	NA	5	True	AATAAA	-18	NA	124690976	124707723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_124691103_124692605_124692657_124692733_124692821_124694819_124694912_124695024_124695088_124696084_124696235_124697190_124697381_124698780_124698864_124699968_124700101_124700652_124700746_124704443_124704559_124704908_124705066_124705897_124706191_124706618
transcript_73616.known	chr5	-	2013	9	FSM	ENSMUSG00000029388.15	ENSMUST00000031334.15	2013	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	226.339761199839	793	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTCAGGCTATGTGAACTT	NA	False	NA	NA	False	NA	NA	NA	124717194	124708275	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_124709418_124709823_124709950_124711140_124711217_124711748_124711818_124712660_124712774_124714860_124714978_124715078_124715216_124716499_124716602_124717063
transcript_73617.known	chr5	+	2531	1	FSM	ENSMUSG00000029387.11	ENSMUST00000200670.2	2531	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAACTGCCTTGGCTGTTTA	NA	False	NA	NA	False	AATAAA	-26	NA	124717204	124719735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_124717200_124719700
transcript_73618.known	chr5	+	2672	13	FSM	ENSMUSG00000029387.11	ENSMUST00000031333.4	2672	13	0	0	0	0	multi-exon	FALSE	canonical	3	570	junction_1	79.1684210331928	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTTTTGTTGTTGTTGAA	NA	False	NA	NA	False	AATAAA	-17	NA	124717202	124735743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_124717265_124720510_124720591_124721996_124722104_124722198_124722366_124726687_124726751_124727433_124727464_124728412_124728442_124728931_124729007_124730543_124730598_124732825_124732895_124733615_124733752_124733865_124733903_124733980
transcript_73619.known	chr5	+	2735	18	FSM	ENSMUSG00000118662.2	ENSMUST00000239501.2	2735	18	0	0	0	0	multi-exon	TRUE	canonical	3	31	junction_8	6.97499240366195	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATGATGGTGGTGATGGT	NA	False	NA	NA	False	ATTAAA	-16	NA	124736811	124765803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_124737020_124737197_124737306_124737769_124737847_124740077_124740274_124741810_124741912_124745798_124745996_124746581_124746706_124748332_124748475_124750706_124750773_124753213_124753349_124754531_124754610_124757093_124757172_124758176_124758289_124761069_124761177_124762380_124762538_124763745_124763872_124763959_124764049_124765169
transcript_73625.nic	chr5	+	1107	7	ISM	ENSMUSG00000118662.2	ENSMUST00000239505.1	2913	17	20198	280	20155	-280	3prime_fragment	FALSE	canonical	3	40	junction_1	5.79271573232759	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTAGTGTTAAGTGAACG	NA	False	NA	34	True	AATAAA	-24	NA	124757009	124765523	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_124757172_124758176_124758289_124761069_124761177_124762380_124762538_124763745_124763872_124763959_124764049_124765169
transcript_73626.nic	chr5	+	1387	7	ISM	ENSMUSG00000118662.2	ENSMUST00000239505.1	2913	17	20198	0	20155	0	3prime_fragment	FALSE	canonical	3	40	junction_1	5.79271573232759	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATGATGGTGGTGATGGT	NA	False	NA	NA	False	ATTAAA	-16	NA	124757009	124765803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_124757172_124758176_124758289_124761069_124761177_124762380_124762538_124763745_124763872_124763959_124764049_124765169
transcript_73628.known	chr5	+	5345	20	FSM	ENSMUSG00000038023.13	ENSMUST00000037865.13	5345	20	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_14	17.8821937464506	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTAGTTTTCTTGTGAT	NA	False	NA	10	True	AATAAA	-21	NA	124767116	124801519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_124767356_124770817_124770897_124773952_124774051_124775423_124775562_124777132_124777222_124779407_124779535_124782904_124782988_124783884_124783979_124784543_124784757_124789272_124789424_124789764_124789902_124790144_124790333_124790431_124790523_124791177_124791297_124793368_124793580_124794949_124795070_124795502_124795623_124796112_124796231_124796914_124797087_124798761
transcript_7363.known	chr10	+	1364	11	FSM	ENSMUSG00000020089.9	ENSMUST00000020286.7	1364	11	0	0	0	0	multi-exon	FALSE	canonical	3	3777	junction_3	128.102654148929	16690	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTAGGATAGTTTCT	2052	False	NA	15	True	AATAAA	-16	NA	61484330	61509947	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_61484571_61487338_61487398_61495227_61495282_61496690_61496811_61499468_61499556_61501118_61501246_61502689_61502818_61503363_61503450_61506196_61506267_61508169_61508213_61509597
transcript_73631.nnic	chr5	+	1084	8	NNC	ENSMUSG00000038023.13	novel	5345	20	NA	NA	0	-91	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	63.9728896662086	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTAAAGTTATTTTTTAAA	NA	False	NA	NA	False	AATATA	-18	NA	124767116	124799112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_124767356_124770817_124770897_124773952_124774051_124775423_124775562_124777132_124777222_124779407_124779535_124782904_124782931_124798824
transcript_73634.known	chr5	-	2473	4	FSM	ENSMUSG00000037979.14	ENSMUST00000036206.14	2473	4	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_3	9.0921211313239	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGATGTGGTGGTTCAGGT	NA	False	NA	NA	False	NA	NA	NA	124939488	124911481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_124913356_124916006_124916049_124916724_124916872_124939078
transcript_73635.known	chr5	+	4092	4	FSM	ENSMUSG00000079215.9	ENSMUST00000111417.9	4092	4	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_3	10.2089285540757	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTATGTTTCCTGTGTGGT	NA	False	NA	8	True	NA	NA	NA	124939754	124965694	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_124939947_124940417_124940573_124961771_124961837_124962014
transcript_73636.nnic	chr5	+	557	3	NNC	ENSMUSG00000079215.9	novel	4092	4	NA	NA	-6	-7692	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	108	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGGCTTGGAATTTTTG	NA	False	NA	NA	False	AATAAA	-18	NA	124939748	124945669	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_124939947_124940417_124940573_124945465
transcript_73637.known	chr5	+	1649	3	FSM	ENSMUSG00000037962.8	ENSMUST00000197746.2	1649	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATGCTCTCTGTTTCTGA	8959	False	NA	NA	False	AATAAA	-17	NA	125080538	125089610	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_125080803_125087435_125087546_125088335
transcript_7364.known	chr10	+	1432	2	FSM	ENSMUSG00000020089.9	ENSMUST00000160470.2	1432	2	0	0	0	0	multi-exon	FALSE	canonical	3	3987	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAACTT	2121	False	NA	NA	False	AATAGA	-43	NA	61484399	61488599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_61484571_61487338
transcript_73640.nnic	chr5	-	803	4	NNC	ENSMUSG00000105039.2	novel	764	4	NA	NA	20387	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1.24721912892465	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGCCTGTTGGCTTTAA	NA	False	NA	NA	False	AATAAA	-35	NA	125329492	125315377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_125315796_125316932_125317002_125325133_125325312_125329354
transcript_73641.nnic	chr5	-	569	3	NNC	ENSMUSG00000105039.2	novel	764	4	NA	NA	32515	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	0.5	27	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGCCTGTTGGCTTTAA	8996	False	NA	NA	False	AATAAA	-35	NA	125317364	125315377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_125315796_125316932_125317002_125317282
transcript_73643.known	chr5	-	2521	13	FSM	ENSMUSG00000037936.16	ENSMUST00000086075.13	2521	13	0	0	0	0	multi-exon	TRUE	canonical	3	188	junction_1	171.680966232913	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGCTTCTGTGACTGTT	NA	False	NA	-1	True	AATAAA	-21	NA	125418158	125354150	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_125354930_125358168_125358298_125360962_125361110_125361744_125361797_125364422_125364497_125366700_125366820_125371061_125371229_125374289_125374406_125375696_125375793_125377400_125377605_125380145_125380288_125381258_125381417_125417820
transcript_73644.known	chr5	-	2367	12	FSM	ENSMUSG00000037936.16	ENSMUST00000111390.8	2367	12	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_1	58.8981471316135	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACTGGCTTCTGTGACTG	NA	False	NA	-3	True	AATAAA	-19	NA	125418135	125354152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_125354930_125360962_125361110_125361744_125361797_125364422_125364497_125366700_125366820_125371061_125371229_125374289_125374406_125375696_125375793_125377400_125377605_125380145_125380288_125381258_125381417_125417820
transcript_73647.nnic	chr5	+	948	3	NNC	ENSMUSG00000104932.2	novel	645	3	NA	NA	9113	8799	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	9	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAGAATGCTGTCATTTC	5234	False	NA	16	True	NA	NA	NA	125447351	125456623	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_125447515_125454603_125454786_125456020
transcript_73648.nnic	chr5	-	552	3	NNC	ENSMUSG00000008348.10	novel	2618	2	NA	NA	235	6	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	458	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCATTTGTGTTGTTGGT	NA	False	NA	-6	True	AATAAA	-20	NA	125466843	125463034	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_125463215_125465039_125465329_125466760
transcript_73649.nnic	chr5	-	442	3	NNC	ENSMUSG00000008348.10	novel	2618	2	NA	NA	235	6	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	456.5	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCATTTGTGTTGTTGGT	NA	False	NA	-6	True	AATAAA	-20	NA	125466843	125463034	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_125463363_125465297_125465329_125466760
transcript_73650.known	chr5	-	4760	27	FSM	ENSMUSG00000029480.14	ENSMUST00000169485.6	4760	27	0	0	0	0	multi-exon	TRUE	canonical	3	122	junction_21	17.4191708985502	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGACTATGCTCTTGATC	NA	False	NA	NA	False	AGTAAA	-16	NA	125511185	125490921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_125492231_125492364_125492463_125492929_125493004_125493087_125493183_125493363_125493502_125493595_125493711_125494485_125494659_125495513_125495631_125495722_125495848_125496024_125496214_125496297_125496405_125498071_125498184_125499182_125499416_125499668_125499746_125500490_125500636_125501688_125501766_125502002_125502099_125502485_125502601_125502735_125502838_125503714_125503829_125504496_125504594_125505377_125505471_125506225_125506375_125506768_125507109_125507882_125507996_125508660_125508831_125510998
transcript_73653.known	chr5	+	6473	3	FSM	ENSMUSG00000037905.14	ENSMUST00000049040.14	6473	3	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_1	23.5	322	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCCTGGATGGATTTCTT	NA	False	NA	30	True	AATAAA	-22	NA	125518631	125537434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_125518957_125528733_125528837_125531389
transcript_73654.known	chr5	+	3239	18	FSM	ENSMUSG00000029482.5	ENSMUST00000031445.5	3239	18	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_4	14.7470013373196	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTACGCGTGTGTTTCTC	NA	False	NA	10	True	AATAAA	-27	NA	125552877	125594474	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_125553174_125559893_125559998_125561600_125561722_125566846_125566961_125571970_125572069_125580246_125580362_125580612_125580695_125583212_125583361_125585740_125585822_125586842_125586968_125588703_125588769_125588909_125589033_125589688_125589803_125590165_125590292_125590982_125591053_125591232_125591292_125591991_125592195_125593279
transcript_73655.nnic	chr5	+	431	3	Antisense	novelGene_ENSMUSG00000119346.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTATTGACAGTTTTATAT	NA	False	NA	NA	False	AATAAA	-18	NA	126447356	126472980	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr5_+_126447449_126472535_126472646_126472751
transcript_73657.known	chr5	+	1028	2	FSM	ENSMUSG00000106015.2	ENSMUST00000200582.2	1028	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGTTGTTGTTATTATT	NA	False	NA	NA	False	AATAAA	-26	NA	127655813	127657173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_127656171_127656502
transcript_73660.known	chr5	+	3413	12	FSM	ENSMUSG00000049971.18	ENSMUST00000118139.3	3413	12	0	0	0	0	multi-exon	TRUE	canonical	3	18	junction_6	12.1383212585269	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAATCTGGCTTGAATTGG	8701	False	NA	NA	False	NA	NA	NA	127709325	127786438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_127709416_127721382_127721532_127727746_127727853_127734150_127734203_127740405_127740443_127741715_127741773_127754268_127754365_127755154_127755205_127766900_127766945_127768053_127768175_127771290_127771390_127783926
transcript_73669.nic	chr5	+	968	10	ISM	ENSMUSG00000049971.18	ENSMUST00000118139.3	3413	12	-59	18157	-59	-685	5prime_fragment	FALSE	canonical	3	18	junction_6	11.5758369027902	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTGTCTGTGTGGTCGTA	8642	False	NA	NA	False	AAAAAG	-45	NA	127709266	127768281	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_127709416_127721382_127721532_127727746_127727853_127734150_127734203_127740405_127740443_127741715_127741773_127754268_127754365_127755154_127755205_127766900_127766945_127768053
transcript_73682.nnic	chr5	+	947	7	NNC	ENSMUSG00000049971.18	novel	1713	11	NA	NA	-211	-22133	at_least_one_novel_splicesite	TRUE	canonical	3	16	junction_6	12.7986544431653	116	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGTCTTGGTCATGGTG	8490	False	NA	NA	False	NA	NA	NA	127709114	127744802	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_127709416_127721382_127721532_127727746_127727853_127734150_127734203_127740405_127740443_127741715_127741773_127744557
transcript_73695.nic	chr5	+	472	3	ISM	ENSMUSG00000049971.18	ENSMUST00000137157.8	1713	11	-160	41147	-160	-39116	5prime_fragment	FALSE	canonical	3	42	junction_2	9	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGTCATGGGGAAAGTTC	8541	False	NA	NA	False	AAGAAA	-5	NA	127709165	127727819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_127709416_127721382_127721532_127727746
transcript_73707.known	chr5	+	607	4	FSM	ENSMUSG00000105857.2	ENSMUST00000198962.2	607	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTTTTGGGTCCTAGTG	NA	False	NA	NA	False	NA	NA	NA	128413840	128419842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_128413948_128417307_128417433_128419160_128419283_128419589
transcript_73716.nic	chr5	-	639	4	NIC	ENSMUSG00000072591.11	novel	2429	6	NA	NA	-41	-7	intron_retention	FALSE	canonical	2	5	junction_1	3.55902608401044	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTCTGGCAAGTCTGTCCT	NA	False	NA	NA	False	AATAAA	-29	NA	128677798	128656176	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_128656350_128661227_128661361_128662335_128662471_128677600
transcript_73721.nic	chr5	-	513	3	NIC	ENSMUSG00000072591.11	novel	2429	6	NA	NA	-41	0	intron_retention	FALSE	canonical	2	6	junction_2	3	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGTCTGTCCTTCCAGAT	NA	False	NA	NA	False	AATAAA	-36	NA	128677798	128656169	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_128656350_128662335_128662471_128677600
transcript_73722.nnic	chr5	-	543	3	NNC	ENSMUSG00000072591.11	novel	2429	6	NA	NA	-1190	0	intron_retention	FALSE	canonical	1	4	junction_2	4	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGTCTGTCCTTCCAGAT	NA	False	NA	NA	False	AATAAA	-36	NA	128678947	128656169	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_128656350_128662335_128662471_128678719
transcript_73727.known	chr5	-	287	2	FSM	ENSMUSG00000072591.11	ENSMUST00000140028.8	287	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGTCTGTCCTTCCAGAT	NA	False	NA	NA	False	AATAAA	-36	NA	128662442	128656169	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_128656350_128662335
transcript_73728.known	chr5	+	4016	22	FSM	ENSMUSG00000029423.11	ENSMUST00000086056.8	4016	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	3.37054064174979	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGTGGGCGTCTCTGTG	NA	False	NA	NA	False	AATAAA	-18	NA	128813237	128832538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_128813419_128814512_128814591_128816107_128816189_128816497_128816613_128817987_128818114_128818555_128818771_128819056_128819179_128820290_128820372_128820843_128821042_128821337_128821450_128822467_128822595_128822711_128822830_128823280_128823396_128824355_128824544_128824898_128824972_128826909_128827111_128827261_128827366_128827894_128827966_128828045_128828200_128829646_128829773_128831004_128831153_128831256
transcript_73730.known	chr5	+	1015	3	FSM	ENSMUSG00000105271.2	ENSMUST00000197674.2	1015	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAAGCCTCCAACCTGAAC	NA	False	NA	NA	False	NA	NA	NA	128846587	128854901	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_128846629_128847330_128847436_128854032
transcript_73731.known	chr5	-	1127	8	FSM	ENSMUSG00000029428.14	ENSMUST00000151712.6	1127	8	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	6.09449400220044	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTAGCCATGTAAGTGTA	NA	False	NA	NA	False	AATAAA	-19	NA	129085613	129067704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_129068166_129068266_129068341_129069243_129069353_129070558_129070633_129071859_129071935_129073425_129073526_129076573_129076652_129085457
transcript_73743.known	chr5	+	2377	7	FSM	ENSMUSG00000029430.14	ENSMUST00000031383.14	2377	7	0	0	0	0	multi-exon	FALSE	canonical	3	11744	junction_1	1335.32560531962	30745	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTGAGTCATCTCTAGT	342	False	NA	21	True	AATATA	-23	NA	129097132	129101387	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
transcript_73744.known	chr5	+	2423	6	FSM	ENSMUSG00000029430.14	ENSMUST00000111343.2	2423	6	0	0	0	0	multi-exon	FALSE	canonical	3	14794	junction_4	293.478040064329	7811	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTGAGTCATCTCTAGT	545	False	NA	21	True	AATATA	-23	NA	129097335	129101387	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
transcript_73745.known	chr5	+	229	3	FSM	ENSMUSG00000029430.14	ENSMUST00000134632.2	229	3	0	0	0	0	multi-exon	FALSE	canonical	3	11744	junction_1	1946	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACGGCAGCGAGGCCTCC	475	False	NA	NA	False	NA	NA	NA	129097265	129097852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_129097343_129097591_129097639_129097747
transcript_73746.known	chr5	+	5163	26	FSM	ENSMUSG00000044017.17	ENSMUST00000056617.14	5163	26	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	27.7999712230067	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAGTCTTGAGCGTCACA	NA	False	NA	29	True	AATAAA	-17	NA	129173813	129281663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_129174291_129174372_129174410_129186641_129186726_129189291_129189388_129192118_129192242_129199474_129199655_129205917_129206173_129208640_129208697_129209775_129209932_129213998_129214059_129216651_129216770_129217797_129217909_129219523_129219600_129221030_129221173_129239658_129239733_129248869_129248994_129255112_129255217_129256232_129256345_129256606_129256761_129265389_129265457_129266696_129266764_129275681_129275774_129277743_129277871_129278195_129278238_129278519_129278613_129279527
transcript_7375.known	chr10	+	897	8	FSM	ENSMUSG00000020088.11	ENSMUST00000219506.2	897	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	587.872053273846	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCCAGTGGTGACATGTG	NA	False	NA	121	True	NA	NA	NA	61516143	61527317	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_61516193_61520012_61520111_61520658_61520733_61520844_61520965_61521332_61521399_61522153_61522258_61525552_61525685_61527063
transcript_73753.known	chr5	-	441	1	FSM	ENSMUSG00000060419.9	ENSMUST00000140155.2	441	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2319	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCATCTCAAGGATCGGGG	NA	False	NA	NA	False	NA	NA	NA	129205581	129205140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_129205100_129205600
transcript_73754.known	chr5	-	938	1	FSM	ENSMUSG00000104873.2	ENSMUST00000199847.2	938	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAAACGGT	NA	False	NA	NA	False	NA	NA	NA	129578065	129577127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_129577100_129578100
transcript_73759.known	chr5	+	437	3	FSM	ENSMUSG00000029439.15	ENSMUST00000200500.2	437	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	33	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAACAAAAAACCAAAA	NA	False	NA	NA	False	NA	NA	NA	129578512	129581445	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_129578661_129581046_129581217_129581326
transcript_73761.nic	chr5	+	1029	2	ISM	ENSMUSG00000029439.15	ENSMUST00000200500.2	437	3	-220	-262	8	0	intron_retention	FALSE	canonical	3	66	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTGAAAAATATTTGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	129578292	129581707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_129578661_129581046
transcript_73762.known	chr5	+	3313	18	FSM	ENSMUSG00000029439.15	ENSMUST00000053737.9	3313	18	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_11	20.649823847033	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGGGGCTCTCCTTCTTC	NA	False	NA	16	True	AATAAA	-29	NA	129578284	129648448	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_129578661_129581046_129581217_129581826_129581959_129584207_129584294_129590110_129590337_129591816_129591930_129593079_129593216_129616638_129616880_129618389_129618519_129619102_129619197_129620277_129620444_129626517_129626749_129627760_129627952_129631506_129631773_129637743_129637870_129646704_129646879_129647539_129647613_129648065
transcript_73763.known	chr5	-	882	1	FSM	ENSMUSG00000057244.7	ENSMUST00000079261.7	882	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1561	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTTTTTATATGAGAAAAA	4041	False	NA	NA	False	NA	NA	NA	129700935	129700053	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_129700100_129700900
transcript_73764.known	chr5	-	3929	3	FSM	ENSMUSG00000051034.8	ENSMUST00000049778.7	3929	3	0	0	0	0	multi-exon	TRUE	canonical	3	10	junction_2	2	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACATTGAAACAGCCTCATG	NA	False	NA	NA	False	AATAAA	-22	NA	129747163	129731656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_129735450_129737833_129737930_129747123
transcript_73769.known	chr5	+	396	4	FSM	ENSMUSG00000034211.15	ENSMUST00000136108.8	396	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	368.698913598737	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGGCCGAGTTATCGACCCC	791	False	NA	NA	False	NA	NA	NA	129792597	129795118	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_129792635_129792747_129792828_129793790_129793931_129794979
transcript_73780.known	chr5	+	859	3	FSM	ENSMUSG00000034211.15	ENSMUST00000119985.2	859	3	0	0	0	0	multi-exon	FALSE	canonical	3	517	junction_1	192.5	445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCTTTTGATAATGACATA	834	False	NA	-10	True	AAGAAA	-35	NA	129792640	129795511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_129792828_129793790_129793931_129794979
transcript_73781.known	chr5	+	832	4	FSM	ENSMUSG00000034211.15	ENSMUST00000042191.12	832	4	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_1	196.309845793724	2375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTTGGCAGCTTGATTTT	760	False	NA	23	True	CATAAA	-12	NA	129792566	129795544	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_129792614_129792747_129792828_129793790_129793931_129794979
transcript_73782.known	chr5	+	843	4	FSM	ENSMUSG00000034211.15	ENSMUST00000118420.8	843	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	354.785381134379	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTCCCCCAAAGAAATCTT	761	False	NA	-60	True	NA	NA	NA	129792567	129795461	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_129792614_129792747_129792923_129793790_129793931_129794979
transcript_73783.known	chr5	+	2182	3	FSM	ENSMUSG00000034211.15	ENSMUST00000121339.2	2182	3	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_1	221	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCACCAACTTGCAAGGA	768	False	NA	NA	False	NA	NA	NA	129792574	129795939	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_129792614_129792747_129793931_129794979
transcript_73784.known	chr5	+	1208	4	FSM	ENSMUSG00000034211.15	ENSMUST00000119604.8	1208	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	359.259732722101	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTGGCCTGTTTTGTTGT	773	False	NA	NA	False	NA	NA	NA	129792579	129795755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_129792614_129792747_129793006_129793790_129793931_129794979
transcript_73785.known	chr5	+	868	3	FSM	ENSMUSG00000034211.15	ENSMUST00000121813.8	868	3	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_1	376	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGATTCTCTGAACTGAA	815	False	NA	39	True	AGTAAA	-34	NA	129792621	129795354	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_129792975_129793790_129793931_129794979
transcript_73789.known	chr5	+	2112	10	FSM	ENSMUSG00000029432.13	ENSMUST00000086046.10	2112	10	0	0	0	0	multi-exon	FALSE	canonical	3	290	junction_9	37.917389085507	1735	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTTGCACGATTGAGACC	7767	False	NA	18	True	AATAAA	-17	NA	129802126	129835391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_129802286_129816535_129816676_129816781_129816828_129821768_129821864_129822279_129822351_129823390_129823532_129825065_129825098_129830289_129830385_129831905_129831990_129834142
transcript_7379.known	chr10	+	2613	7	FSM	ENSMUSG00000020088.11	ENSMUST00000020285.10	2613	7	0	0	0	0	multi-exon	FALSE	canonical	3	1130	junction_5	94.5492229241233	2743	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTCTCTCCTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	61516088	61529076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_61516193_61520658_61520733_61520844_61520965_61521332_61521399_61522153_61522258_61525552_61525685_61527063
transcript_73790.known	chr5	+	310	2	FSM	ENSMUSG00000086916.3	ENSMUST00000155796.2	310	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAACTCT	9750	False	NA	NA	False	NA	NA	NA	129804109	129805449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_129804190_129805219
transcript_73808.known	chr5	-	1733	8	FSM	ENSMUSG00000029446.15	ENSMUST00000031399.13	1733	8	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_7	460.03695503731	10201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTCAGTAGTTTTAAGTGA	8757	False	NA	-2	True	ATTAAA	-22	NA	129864513	129842621	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_129842963_129843482_129843632_129846302_129846449_129847669_129847805_129848539_129848697_129856085_129856313_129856425_129856509_129864018
transcript_73820.known	chr5	+	2588	14	FSM	ENSMUSG00000029447.14	ENSMUST00000201414.5	2588	14	0	0	0	0	multi-exon	TRUE	canonical	3	3618	junction_3	465.957308149311	10312	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACACTTGAAATGACTGAAA	NA	False	NA	38	True	AATAAA	-30	NA	129864061	129875212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
transcript_73821.known	chr5	-	398	2	FSM	ENSMUSG00000029446.15	ENSMUST00000201022.2	398	2	0	0	0	0	multi-exon	FALSE	canonical	3	1106	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAAAAAAAAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	129856270	129848483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_129848697_129856085
transcript_73822.known	chr5	-	510	4	FSM	ENSMUSG00000029446.15	ENSMUST00000201394.4	510	4	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	539.585849414983	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGGAGCACGTTGCTG	NA	False	NA	NA	False	NA	NA	NA	129856277	129846382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_129846449_129847669_129847805_129848539_129848697_129856125
transcript_73827.known	chr5	-	2374	10	FSM	ENSMUSG00000025537.13	ENSMUST00000026617.13	2374	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	7.58653778449403	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATTTATTGACCTCATAAG	NA	False	NA	NA	False	NA	NA	NA	129907924	129892261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_129893531_129893815_129893942_129894757_129894912_129895036_129895128_129895702_129895867_129898301_129898368_129902056_129902112_129902509_129902689_129903062_129903180_129907771
transcript_73884.known	chr5	-	915	4	FSM	ENSMUSG00000070493.4	ENSMUST00000094280.4	915	4	0	0	0	0	multi-exon	FALSE	canonical	3	5311	junction_3	452.984424554409	95215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTAGCGTCCTTATTGT	2064	False	NA	-3	True	AATAAA	-18	NA	129916311	129909996	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_129910238_129911269_129911421_129912774_129913025_129916038
transcript_73885.known	chr5	+	1656	10	FSM	ENSMUSG00000025538.16	ENSMUST00000137357.5	1656	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	198.480213275098	170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTTATTTATTTATTAT	NA	False	NA	16	True	AATAAA	-16	NA	129875860	129892273	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_129875928_129878741_129878899_129881714_129881827_129882863_129882909_129883304_129883349_129883528_129883680_129887080_129887137_129888677_129888763_129888910_129889056_129891479
transcript_73886.known	chr5	-	2069	3	FSM	ENSMUSG00000070493.4	ENSMUST00000131645.2	2069	3	0	0	0	0	multi-exon	FALSE	canonical	3	5311	junction_2	528	2532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGGTAGCGTCCTTAT	2261	False	NA	-6	True	AATAAA	-15	NA	129916114	129909999	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_129910238_129911269_129913025_129916038
transcript_73887.known	chr5	+	2492	4	FSM	ENSMUSG00000034173.14	ENSMUST00000041466.14	2492	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_3	2120.04764097414	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCTGTCTCAAAAAAAATTT	6005	False	NA	NA	False	AATAAA	-17	NA	129924563	129932464	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_129924694_129928023_129928274_129929185_129929337_129930503
transcript_73888.known	chr5	+	628	3	FSM	ENSMUSG00000095789.7	ENSMUST00000195766.6	628	3	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAACTCTTCTGGCTTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	129937380	129940122	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_129937763_129939738_129939788_129939925
transcript_73889.known	chr5	+	3112	3	FSM	ENSMUSG00000066735.9	ENSMUST00000051758.11	3112	3	0	0	0	0	multi-exon	FALSE	canonical	3	775	junction_1	60.5	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTTGTGTTTTATTTGG	NA	False	NA	44	True	AATATA	-17	NA	129970810	130013587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_129971207_130007359_130007470_130010981
transcript_73896.known	chr5	+	650	3	FSM	ENSMUSG00000066735.9	ENSMUST00000073945.6	650	3	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	420.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACCGAGCCAATCAAAGACA	NA	False	NA	NA	False	AAAAAG	-5	NA	129970967	130011420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_129971069_130007359_130007470_130010981
transcript_73901.known	chr5	+	4809	2	FSM	ENSMUSG00000066735.9	ENSMUST00000201855.2	4809	2	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGTGCTGCCATCGTTCT	NA	False	NA	13	True	AATAAA	-20	NA	129970949	130015533	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_129971207_130010981
transcript_73902.known	chr5	-	2687	12	FSM	ENSMUSG00000025534.18	ENSMUST00000026613.14	2687	12	0	0	0	0	multi-exon	TRUE	canonical	3	83	junction_6	16.6092675514317	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTCTTTCGTTACTATC	NA	False	NA	NA	False	NA	NA	NA	130031890	130017851	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_130018529_130018857_130018994_130022258_130022436_130024287_130024373_130026620_130026768_130026857_130027037_130027250_130027395_130028181_130028370_130028767_130028911_130029201_130029384_130029597_130029784_130031447
transcript_73905.known	chr5	-	2272	11	FSM	ENSMUSG00000025534.18	ENSMUST00000201801.4	2272	11	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_9	32.1249124512426	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAAAACTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	130031669	130017863	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_130018529_130018857_130018994_130022258_130022436_130024287_130024373_130026620_130026768_130026857_130027037_130027250_130027395_130028181_130028370_130028767_130028911_130029597_130029784_130031447
transcript_7391.known	chr10	+	2286	4	FSM	ENSMUSG00000020087.6	ENSMUST00000020284.5	2286	4	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_1	6.12825877028341	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTCTGTTGGCTGCTTTT	NA	False	NA	21	True	AATAAA	-24	NA	61531292	61538552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_61532522_61534076_61534208_61535221_61535408_61537812
transcript_73910.known	chr5	-	2038	4	FSM	ENSMUSG00000025534.18	ENSMUST00000111308.8	2038	4	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_2	11.5854314646552	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	130031706	130027499	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_130028911_130029201_130029384_130029597_130029784_130031447
transcript_73911.known	chr5	-	932	3	FSM	ENSMUSG00000025534.18	ENSMUST00000111307.2	932	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	55.5	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTCGCTATTGTCTTGG	NA	False	NA	NA	False	AATAAA	-15	NA	130031722	130028439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_130028911_130029597_130029784_130031447
transcript_73914.known	chr5	-	1824	17	FSM	ENSMUSG00000025533.16	ENSMUST00000161094.8	1824	17	0	0	0	0	multi-exon	FALSE	canonical	1	102	junction_3	46.3975686324187	894	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGGAGAGATGTGTCAGT	NA	False	NA	NA	False	CATAAA	-21	NA	130053222	130040098	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_130040542_130040705_130040813_130040890_130040972_130041497_130041582_130041837_130041898_130042009_130042095_130042241_130042357_130042803_130042867_130043519_130043573_130044937_130045016_130045136_130045215_130047150_130047249_130047388_130047446_130047673_130047758_130048502_130048698_130052882_130052938_130053134
transcript_73923.known	chr5	-	2413	16	FSM	ENSMUSG00000025533.16	ENSMUST00000160129.8	2413	16	0	0	0	0	multi-exon	FALSE	canonical	1	102	junction_3	47.1472398155207	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAAGCATATGCTTCTGC	NA	False	NA	-10	True	AATAAA	-21	NA	130053860	130040344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_130040542_130040705_130040813_130040890_130040972_130041497_130041582_130041837_130041898_130042009_130042095_130042241_130042357_130042803_130042867_130043519_130043573_130044937_130045016_130045136_130045215_130047150_130047249_130047388_130047446_130047673_130047758_130048502_130048698_130052882
transcript_73925.known	chr5	+	669	6	FSM	ENSMUSG00000025532.14	ENSMUST00000156729.2	669	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	131.765549367048	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGACCCCCTCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	130058183	130088773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_130058336_130063752_130063790_130066660_130066760_130071046_130071142_130077766_130077825_130088545
transcript_73929.known	chr5	+	1492	6	FSM	ENSMUSG00000025532.14	ENSMUST00000026608.11	1492	6	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_4	51.2382669496149	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGTGCCACCATACCTGG	NA	False	NA	5	True	AAAACA	-1	NA	130058130	130089630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_130058249_130063752_130063790_130066660_130066760_130071046_130071142_130077766_130077825_130088545
transcript_73930.known	chr5	+	931	5	FSM	ENSMUSG00000025532.14	ENSMUST00000202163.4	931	5	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_3	138.212472302611	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCTAATGTGCATGCATG	NA	False	NA	NA	False	NA	NA	NA	130058142	130089176	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_130058249_130063752_130063790_130066660_130066760_130077766_130077825_130088545
transcript_73931.known	chr5	+	2050	6	FSM	ENSMUSG00000034118.16	ENSMUST00000040721.9	2050	6	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_2	10.899541274751	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAATGGTCCCGTTTTCAG	NA	False	NA	17	True	AATAAA	-18	NA	130108210	130164570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_130108503_130130430_130131377_130143308_130143508_130158348_130158400_130163299_130163340_130164048
transcript_73933.known	chr5	+	4291	4	FSM	ENSMUSG00000034110.9	ENSMUST00000040616.9	4291	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	1.88561808316413	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGCCCTCAAGAGGCAGAG	1855	False	NA	NA	False	NA	NA	NA	130173701	130184647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_130174068_130176894_130177065_130180511_130180691_130181071
transcript_73937.known	chr5	+	2690	9	FSM	ENSMUSG00000025340.15	ENSMUST00000119797.8	2690	9	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_3	33.6962535009458	213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTTTTGTTTTGTTTCTG	NA	False	NA	21	True	AATAAA	-43	NA	130200638	130243183	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_130200736_130216241_130216428_130219717_130219885_130226790_130226958_130235849_130235932_130237526_130237660_130239264_130239357_130240702_130240960_130241674
transcript_73939.known	chr5	+	3607	7	FSM	ENSMUSG00000053094.16	ENSMUST00000065329.13	3607	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	200.953283681114	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGTATCCCCGGCCATG	6426	False	NA	113	True	NA	NA	NA	130248584	130272606	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_130248761_130258289_130258468_130260595_130260882_130265643_130265795_130267087_130267272_130269188_130269333_130270118
transcript_7394.known	chr10	+	1512	10	FSM	ENSMUSG00000020085.16	ENSMUST00000105455.9	1512	10	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_9	38.6497408676411	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGCTGGAGCTTTTATTTT	NA	False	NA	8	True	AATAAA	-19	NA	61551041	61574432	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907_61564001_61568101_61568211_61570055_61570209_61571236_61571438_61572361_61572538_61574177
transcript_73941.known	chr5	+	3570	7	FSM	ENSMUSG00000053094.16	ENSMUST00000111298.6	3570	7	0	0	0	0	multi-exon	FALSE	canonical	3	519	junction_4	20.4042479237372	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTTTGCCGTTTTAATTC	9017	False	NA	14	True	AATAAA	-15	NA	130251175	130272507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_130251414_130258289_130258468_130260595_130260882_130265643_130265795_130267087_130267272_130269188_130269333_130270118
transcript_73948.known	chr5	-	1548	5	FSM	ENSMUSG00000025337.11	ENSMUST00000026387.11	1548	5	0	0	0	0	multi-exon	FALSE	canonical	3	697	junction_4	74.8765650921568	2770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCTTGCATTTCTAGT	NA	False	NA	0	True	AATAAA	-17	NA	130284371	130274571	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_130275303_130277126_130277292_130279654_130279856_130282779_130282910_130284050
transcript_73958.known	chr5	-	815	5	FSM	ENSMUSG00000025337.11	ENSMUST00000139211.5	815	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	362.983728974179	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGAAAGGCAGGGGTTCTCT	NA	False	NA	NA	False	AATAAA	-8	NA	130284246	130275245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_130275303_130277126_130277292_130279654_130279856_130282779_130282910_130283984
transcript_7396.known	chr10	+	1442	10	FSM	ENSMUSG00000020085.16	ENSMUST00000067857.11	1442	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_9	41.9205597927	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCCGATCCTCCTCCTTCG	NA	False	NA	NA	False	AATAAA	-21	NA	61551089	61575039	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907_61564001_61568101_61568211_61570055_61570209_61571236_61571438_61572361_61572538_61574806
transcript_73969.nic	chr5	+	2560	16	NIC	ENSMUSG00000056310.15	novel	4698	9	NA	NA	-54	-406	combination_of_known_junctions	FALSE	canonical	3	48	junction_1	68.4530658350831	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACTGGCTTTGTCCTTAC	3458	False	NA	20	True	AATAAA	-23	NA	130284405	130369998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_130284487_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130306773_130306892_130310621_130310675_130316083_130316203_130317693_130317804_130325464_130325643_130328744_130328881_130354439_130354551_130364086_130364255_130369459
transcript_73970.known	chr5	+	3044	16	FSM	ENSMUSG00000056310.15	ENSMUST00000040213.13	3044	16	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_10	31.6406208676266	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGACATGTTCCCATGCTT	4928	False	NA	NA	False	AATAAA	-17	NA	130285875	130370404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_130286035_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130306773_130306892_130310621_130310675_130316083_130316203_130317693_130317804_130325464_130325643_130328744_130328881_130354439_130354551_130364086_130364255_130369459
transcript_73977.known	chr5	+	4698	9	FSM	ENSMUSG00000056310.15	ENSMUST00000173375.2	4698	9	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	89.5809689610466	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAAGTCTCAAATG	3512	False	NA	NA	False	NA	NA	NA	130284459	130314227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_130284487_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130306773_130306892_130310621
transcript_73978.nic	chr5	+	1327	9	ISM	ENSMUSG00000056310.15	ENSMUST00000040213.13	3044	16	-3	59683	-3	-3506	5prime_fragment	FALSE	canonical	3	266	junction_8	28.1724599564894	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTTTTGTCCATTTATT	4925	False	NA	NA	False	NA	NA	NA	130285872	130310721	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_130286035_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130306773_130306892_130310621
transcript_73981.known	chr5	+	1867	8	FSM	ENSMUSG00000056310.15	ENSMUST00000100662.10	1867	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	111.662392039211	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTACTGACTTAGGCTG	4928	False	NA	NA	False	TTTAAA	-5	NA	130285875	130306590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_130286035_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130305829
transcript_73983.nic	chr5	+	1230	7	ISM	ENSMUSG00000056310.15	ENSMUST00000173375.2	4698	9	-54	10441	-54	-2804	5prime_fragment	FALSE	canonical	3	48	junction_1	102.654220024746	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTGTCTGCACTTTGTGT	3458	False	NA	NA	False	ATTAAA	-17	NA	130284405	130303786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_130284487_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461
transcript_73984.nic	chr5	+	1311	7	ISM	ENSMUSG00000056310.15	ENSMUST00000100662.10	1867	8	-3	2804	-3	-2804	5prime_fragment	FALSE	canonical	3	273	junction_6	27.5479380151925	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTGTCTGCACTTTGTGT	4925	False	NA	NA	False	ATTAAA	-17	NA	130285872	130303786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_130286035_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461
transcript_73989.known	chr5	+	414	1	FSM	ENSMUSG00000058905.6	ENSMUST00000145209.2	414	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18885	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCCACACGCCCGAAGCAA	NA	False	NA	NA	False	NA	NA	NA	133503961	133504375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_133504000_133504400
transcript_73991.known	chr5	-	2321	11	FSM	ENSMUSG00000061979.9	ENSMUST00000076228.3	2321	11	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_2	26.6850145212627	198	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGACTTGATCATTTCTT	NA	False	NA	4	True	AATAAA	-42	NA	134205613	134176892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_134177846_134182962_134183049_134184578_134184753_134186429_134186518_134192462_134192645_134194177_134194263_134195503_134195556_134197050_134197118_134198056_134198186_134200685_134200816_134205238
transcript_74.known	ERCC-00156	+	478	1	FSM	ERCC-00156A	DQ883643	478	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	478	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00156_+_0_500
transcript_74001.known	chr5	-	3572	31	FSM	ENSMUSG00000023079.15	ENSMUST00000073161.12	3572	31	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_9	54.133743840808	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAAGCGTCACTTTTTTTT	NA	False	NA	NA	False	AGTAAA	-16	NA	134485542	134386514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_134386751_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134395689_134395771_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134485362
transcript_74003.known	chr5	-	3524	30	FSM	ENSMUSG00000023079.15	ENSMUST00000171794.9	3524	30	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_8	45.8592169193566	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTCACTTTTTTTTCCCCT	NA	False	NA	NA	False	AGTAAA	-21	NA	134485570	134386509	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_134386751_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134485362
transcript_74008.known	chr5	-	1481	12	FSM	ENSMUSG00000040751.13	ENSMUST00000200998.4	1481	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	0.98752549920002	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACACCTTCCCCTGTGTGT	1678	False	NA	NA	False	AATAAA	-44	NA	134637865	134629091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_134629828_134631414_134631524_134631952_134632025_134632274_134632335_134633599_134633656_134634785_134634817_134634899_134634936_134635214_134635247_134635413_134635475_134635631_134635676_134637008_134637049_134637661
transcript_7401.known	chr10	+	3086	9	FSM	ENSMUSG00000020085.16	ENSMUST00000099706.9	3086	9	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	25.5706741209535	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGACGCTGGAGCTTT	NA	False	NA	2	True	AATAAA	-13	NA	61551101	61574426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907_61564001_61568101_61568211_61570055_61570209_61571236_61571438_61572361
transcript_74013.known	chr5	+	4995	11	FSM	ENSMUSG00000023104.10	ENSMUST00000023867.8	4995	11	0	0	0	0	multi-exon	FALSE	canonical	3	1115	junction_7	96.2091991443646	2109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATATGATTTGTCTTCCTG	NA	False	NA	NA	False	ATTAAA	-22	NA	134611543	134630659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_134611741_134615751_134615822_134617785_134617828_134618208_134618316_134619729_134619832_134619972_134620074_134622042_134622201_134623062_134623129_134624136_134624218_134625735_134625850_134626702
transcript_74028.known	chr5	+	967	6	FSM	ENSMUSG00000023104.10	ENSMUST00000201674.2	967	6	0	0	0	0	multi-exon	FALSE	canonical	3	1227	junction_5	81.2147769805471	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGCGTGTGTAAAGGTCA	NA	False	NA	NA	False	NA	NA	NA	134611610	134620488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_134611741_134615751_134615822_134617785_134617828_134618208_134618316_134619729_134619832_134619972
transcript_74033.known	chr5	-	2367	6	FSM	ENSMUSG00000040731.14	ENSMUST00000036125.10	2367	6	0	0	0	0	multi-exon	FALSE	canonical	3	1750	junction_2	182.920310517996	1921	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTATGCTTGTCTTTCTGG	10021	False	NA	-4	True	AATAAA	-18	NA	134668201	134648730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_134650503_134650802_134650941_134654219_134654317_134654394_134654460_134656441_134656630_134668094
transcript_74038.nic	chr5	+	1234	7	NIC	ENSMUSG00000040557.15	novel	2808	6	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_6	36.2583323756991	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGACCAGTGTGTACTGTAA	3383	False	NA	4	True	NA	NA	NA	134961192	134970086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_134961265_134961475_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310_134969548_134969745
transcript_74039.nic	chr5	+	1261	7	NIC	ENSMUSG00000040557.15	novel	1387	6	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	42.3070784726255	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGACCAGTGTGTACTGTAA	3394	False	NA	4	True	NA	NA	NA	134961203	134970086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_134961303_134961475_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310_134969548_134969745
transcript_7404.known	chr10	-	2175	9	FSM	ENSMUSG00000020086.7	ENSMUST00000020283.5	2175	9	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_7	26.0813031691286	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCAGCGTCTTTCTTATA	NA	False	NA	-26	True	NA	NA	NA	61619926	61574443	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_61575242_61576913_61577089_61582411_61582502_61583450_61583551_61585054_61585166_61587455_61587654_61589240_61589348_61593502_61593734_61619561
transcript_74043.known	chr5	+	1790	6	FSM	ENSMUSG00000040557.15	ENSMUST00000111219.8	1790	6	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	38.8947297201048	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAATAGAAAGTAAAGAGA	3417	False	NA	NA	False	NA	NA	NA	134961226	134970577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_134961265_134961574_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310
transcript_74045.known	chr5	+	2808	6	FSM	ENSMUSG00000040557.15	ENSMUST00000047196.14	2808	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	28.2460616723819	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTTTTTTACATTTATAT	3412	False	NA	NA	False	AATAAA	-23	NA	134961221	134971491	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_134961265_134961475_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310
transcript_74048.known	chr5	+	1387	6	FSM	ENSMUSG00000040557.15	ENSMUST00000111218.8	1387	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	38.4988311510882	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAGAAAAAAAATAAAAATA	3436	False	NA	16	True	NA	NA	NA	134961245	134970056	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_134961303_134961475_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310
transcript_74050.nnic	chr5	+	1322	6	NIC	ENSMUSG00000040557.15	novel	1387	6	NA	NA	-10	0	intron_retention	FALSE	canonical	0	0	junction_1	42.8579047551324	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAGAAAAAAAATAAAAATA	3402	False	NA	16	True	NA	NA	NA	134961211	134970056	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_134961303_134961574_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310
transcript_74051.known	chr5	+	721	6	FSM	ENSMUSG00000040557.15	ENSMUST00000201847.3	721	6	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	40.4791304254427	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGATGGCTTCATCTCTG	3568	False	NA	NA	False	NA	NA	NA	134961377	134969488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_134961436_134961574_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310
transcript_74052.known	chr5	+	573	2	FSM	ENSMUSG00000040557.15	ENSMUST00000148286.2	573	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGACCAGTGTGTACTGTAA	2462	False	NA	4	True	NA	NA	NA	134969315	134970086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_134969548_134969745
transcript_74053.known	chr5	+	707	3	FSM	ENSMUSG00000040557.15	ENSMUST00000136246.5	707	3	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_2	5.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTTCTGTCCCACTCCA	3450	False	NA	NA	False	NA	NA	NA	134961259	134963278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_134961702_134962326_134962456_134963142
transcript_74054.known	chr5	-	1816	1	FSM	ENSMUSG00000047501.4	ENSMUST00000051401.4	1816	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1978	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTGTTCTCTATCTGTG	NA	False	NA	-9	True	AATAAA	-25	NA	134975788	134973972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_134974000_134975800
transcript_74055.known	chr5	+	1259	1	FSM	ENSMUSG00000070473.5	ENSMUST00000094245.4	1259	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	356	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCGCTGGAGCTTCCTTAT	5041	False	NA	38	True	AATAAA	-18	NA	135015067	135016326	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_135015100_135016300
transcript_74056.known	chr5	+	972	6	FSM	ENSMUSG00000040532.15	ENSMUST00000111216.8	972	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	236.865024855929	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCCAACACTTTTAATGAAT	NA	False	NA	-29	True	NA	NA	NA	135038005	135040985	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_135038070_135038835_135038972_135039740_135039915_135040063_135040235_135040337_135040520_135040740
transcript_7406.nic	chr10	+	734	5	ISM	ENSMUSG00000020085.16	ENSMUST00000105455.9	1512	10	-25	10341	-25	391	5prime_fragment	FALSE	canonical	3	116	junction_1	28.6050694807756	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTTGTTTGATTGTTTA	NA	False	NA	NA	False	AAAAAG	-15	NA	61551016	61564091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907
transcript_74068.known	chr5	-	604	4	FSM	ENSMUSG00000085042.9	ENSMUST00000136022.8	604	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	14.0079342596338	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTCCGTGCCCCTGAGT	NA	False	NA	0	True	ATTAAA	-29	NA	135042107	135040967	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_135041187_135041283_135041405_135041547_135041643_135041938
transcript_7407.nnic	chr10	+	700	5	NNC	ENSMUSG00000020085.16	novel	3086	9	NA	NA	-25	391	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	64.4069095672196	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTTGTTTGATTGTTTA	NA	False	NA	NA	False	AAAAAG	-15	NA	61551016	61564091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_61551132_61561634_61561834_61562143_61562260_61563459_61563546_61563907
transcript_74072.known	chr5	-	594	3	FSM	ENSMUSG00000085042.9	ENSMUST00000154060.2	594	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	17	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGGACCCTCTCCGTGC	NA	False	NA	-8	True	ATTAAA	-21	NA	135042008	135040975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_135041405_135041547_135041643_135041938
transcript_74075.known	chr5	+	1493	6	FSM	ENSMUSG00000040532.15	ENSMUST00000046999.12	1493	6	0	0	0	0	multi-exon	FALSE	canonical	3	445	junction_1	65.8634952003004	2222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCCGTTTTCACCACCGT	NA	False	NA	15	True	AATAAA	-22	NA	135038152	135041029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_135038694_135038835_135038972_135039740_135039915_135040063_135040235_135040337_135040520_135040740
transcript_74076.known	chr5	+	1473	5	FSM	ENSMUSG00000040532.15	ENSMUST00000154469.8	1473	5	0	0	0	0	multi-exon	FALSE	canonical	3	552	junction_3	34.8926926447358	568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGGATCCGTTTTCACC	NA	False	NA	10	True	AATAAA	-17	NA	135038309	135041024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_135038972_135039740_135039915_135040063_135040235_135040337_135040520_135040740
transcript_74077.known	chr5	+	1475	3	FSM	ENSMUSG00000040532.15	ENSMUST00000149778.2	1475	3	0	0	0	0	multi-exon	FALSE	canonical	3	589	junction_1	28.5	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGGATCCGTTTTCACC	NA	False	NA	10	True	AATAAA	-17	NA	135038559	135041024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_135038972_135039740_135040520_135040740
transcript_74079.known	chr5	+	2167	10	FSM	ENSMUSG00000007207.11	ENSMUST00000150838.2	2167	10	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	7.53428378140653	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGCCTCTGTTTGGAACA	NA	False	NA	15	True	AATAAA	-15	NA	135052413	135079954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_135052465_135065979_135066058_135066329_135066430_135070090_135070166_135070784_135070859_135070962_135071072_135071446_135071521_135074450_135074589_135077764_135077959_135078680
transcript_74080.known	chr5	+	1661	1	FSM	ENSMUSG00000061118.9	ENSMUST00000071263.7	1661	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	310	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTGAGTGTGGTCCTCT	3132	False	NA	NA	False	NA	NA	NA	135093055	135094716	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_135093100_135094700
transcript_74081.known	chr5	-	1169	10	FSM	ENSMUSG00000005378.18	ENSMUST00000111205.8	1169	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	333.393994480338	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGGTGTCCCTGGCCCTG	NA	False	NA	-3	True	ATTAAA	-14	NA	135092932	135081812	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_135082279_135082402_135082493_135085695_135085782_135086473_135086525_135087960_135088058_135089587_135089685_135089926_135090010_135090102_135090199_135092737_135092776_135092867
transcript_74082.known	chr5	-	1544	4	FSM	ENSMUSG00000043614.14	ENSMUST00000067935.11	1544	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	2.86744175568088	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGCCCCGCCTCCTCTCT	NA	False	NA	-2	True	NA	NA	NA	135107120	135101753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_135102838_135103247_135103331_135105311_135105484_135106915
transcript_74088.known	chr5	+	1822	4	FSM	ENSMUSG00000005373.14	ENSMUST00000141770.5	1822	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	4.96655480858378	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAAACCAAAACCAGAAC	3407	False	NA	NA	False	NA	NA	NA	135135744	135151896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_135136070_135142480_135142588_135150359_135150443_135150589
transcript_74093.known	chr5	+	7488	7	FSM	ENSMUSG00000005374.14	ENSMUST00000153183.8	7488	7	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_3	17.4610678049451	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTGAGCCGTCAAATCAT	9490	False	NA	NA	False	AATAAA	-10	NA	135178510	135194614	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_135178719_135181788_135181911_135183167_135183353_135185221_135185374_135186385_135186513_135187457_135187611_135188073
transcript_74095.known	chr5	+	1758	6	FSM	ENSMUSG00000029681.13	ENSMUST00000031692.12	1758	6	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_5	29.6445610525776	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGACAGCTTCTTTCTACA	8669	False	NA	29	True	ATTAAA	-24	NA	135197136	135210709	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_135197453_135199940_135200017_135205982_135206080_135208803_135208975_135209369_135209450_135209691
transcript_74096.nnic	chr5	+	1676	6	NNC	ENSMUSG00000029681.13	novel	907	3	NA	NA	430	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	100.312711058968	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGACAGCTTCTTTCTACA	9261	False	NA	29	True	ATTAAA	-24	NA	135197728	135210709	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_135197963_135199940_135200017_135205982_135206080_135208803_135208975_135209369_135209450_135209691
transcript_74097.known	chr5	+	564	3	FSM	ENSMUSG00000029681.13	ENSMUST00000111187.10	564	3	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_2	118	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAAAGTGTCTATTTTTG	8775	False	NA	NA	False	AAAACA	-3	NA	135197242	135202302	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_135197453_135199940_135200017_135202024
transcript_74099.nnic	chr5	+	588	3	NNC	ENSMUSG00000029681.13	novel	1758	6	NA	NA	430	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	41	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAAAGTGTCTATTTTTG	9261	False	NA	NA	False	AAAACA	-3	NA	135197728	135202302	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_135197963_135199940_135200017_135202024
transcript_74100.known	chr5	+	6492	19	FSM	ENSMUSG00000002748.8	ENSMUST00000002825.6	6492	19	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_5	50.9896201008077	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACAGCTTTGATGTTTCC	NA	False	NA	41	True	AATAAA	-44	NA	135216117	135274983	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_135216611_135225325_135225443_135227024_135227170_135233843_135234046_135237896_135238019_135239594_135239793_135245443_135247149_135250811_135250951_135251938_135252073_135255363_135255467_135257380_135257480_135259010_135259189_135260453_135260637_135265128_135265277_135266772_135266921_135268880_135269000_135271265_135271397_135272662_135272767_135272959
transcript_74101.known	chr5	+	2423	3	FSM	ENSMUSG00000002748.8	ENSMUST00000142307.2	2423	3	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_1	30.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGAGAATGATAAGAAGAGA	6964	False	NA	-10	True	NA	NA	NA	135237261	135246911	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_135238019_135239594_135239793_135245443
transcript_74107.known	chr5	-	1297	8	FSM	ENSMUSG00000040013.12	ENSMUST00000201791.4	1297	8	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_4	339.384075967639	457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGCAGTACAATTCATTG	NA	False	NA	-1	True	AATAAA	-20	NA	135378868	135320557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_135320966_135366468_135366562_135368331_135368442_135368775_135368971_135374943_135375147_135376730_135376821_135378471_135378590_135378788
transcript_74108.known	chr5	-	1447	9	FSM	ENSMUSG00000040013.12	ENSMUST00000044972.11	1447	9	0	0	0	0	multi-exon	FALSE	canonical	3	793	junction_1	94.8445273856114	2888	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGCAGTACAATTCATTG	NA	False	NA	-1	True	AATAAA	-20	NA	135378898	135320557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_135320966_135366468_135366562_135368331_135368442_135368775_135368971_135373502_135373623_135374943_135375147_135376730_135376821_135378471_135378590_135378788
transcript_74109.known	chr5	-	1287	8	FSM	ENSMUSG00000040013.12	ENSMUST00000201534.2	1287	8	0	0	0	0	multi-exon	FALSE	canonical	3	922	junction_1	63.5022095067951	1319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAGTCATTAGTGTGACA	NA	False	NA	-3	True	ATTAAA	-24	NA	135378897	135366219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_135366562_135368331_135368442_135368775_135368971_135373502_135373623_135374943_135375147_135376730_135376821_135378471_135378590_135378788
transcript_74110.known	chr5	-	1235	8	FSM	ENSMUSG00000040013.12	ENSMUST00000201784.4	1235	8	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_7	331.894438590566	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAGTCATTAGTGTGACA	NA	False	NA	-3	True	ATTAAA	-24	NA	135378729	135366219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_135366562_135368331_135368442_135368775_135368971_135373502_135373623_135374943_135375147_135376730_135376821_135378471_135378590_135378672
transcript_74111.nnic	chr5	+	1997	7	NNC	ENSMUSG00000053388.11	novel	1803	6	NA	NA	-1411	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	2.86744175568088	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGTGCTTCCCAACTTG	NA	False	NA	NA	False	AATAAA	-4	NA	135380737	135396859	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_135380916_135382136_135382549_135387708_135387805_135392581_135392813_135392903_135392927_135395394_135395520_135395927
transcript_74113.known	chr5	+	1803	6	FSM	ENSMUSG00000053388.11	ENSMUST00000065785.4	1803	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	7.17216843081644	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGTGCTTCCCAACTTG	NA	False	NA	NA	False	AATAAA	-4	NA	135382149	135396859	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_135382549_135387708_135387805_135392581_135392813_135392906_135392927_135395394_135395520_135395927
transcript_74117.known	chr5	+	2243	10	FSM	ENSMUSG00000000916.16	ENSMUST00000000940.15	2243	10	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_9	22.1966519552993	481	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAATGTTTAAATATTT	NA	False	NA	NA	False	AATAAA	-12	NA	135398806	135405652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_135398931_135399044_135399168_135400094_135400270_135400351_135400461_135402807_135402947_135403037_135403154_135403780_135403960_135404128_135404340_135404408_135404553_135404729
transcript_74118.known	chr5	-	5580	13	FSM	ENSMUSG00000053293.10	ENSMUST00000111171.6	5580	13	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_6	20.4224481610038	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGAGTTTGCCCTTTATT	NA	False	NA	-5	True	AATAAA	-18	NA	135423400	135404994	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_135407029_135407488_135407612_135409773_135411391_135411924_135412099_135412480_135412584_135412692_135412818_135412946_135413021_135413706_135413799_135415677_135415850_135417490_135417572_135420475_135420635_135421163_135421380_135422790
transcript_74120.nic	chr5	-	1752	13	NIC	ENSMUSG00000039959.14	novel	1625	14	NA	NA	-181	0	combination_of_known_junctions	FALSE	canonical	2	166	junction_11	29.2616311157727	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCAATTAGAATTTGTT	9429	False	NA	NA	False	AATAAA	-15	NA	135518293	135464968	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_135465364_135467388_135467487_135468875_135469017_135469102_135469179_135473588_135473647_135478537_135478679_135480427_135480490_135481653_135481731_135483918_135484000_135485892_135485950_135486953_135487097_135489260_135489325_135517934
transcript_74125.known	chr5	+	4363	5	FSM	ENSMUSG00000039917.11	ENSMUST00000136748.6	4363	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	101.030626544628	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAGGCATGGCC	NA	False	NA	NA	False	NA	NA	NA	135661507	135675302	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_135661773_135663957_135664078_135664848_135665257_135667943_135668095_135671883
transcript_74129.known	chr5	+	4207	4	FSM	ENSMUSG00000039917.11	ENSMUST00000043707.7	4207	4	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_1	25.703436864876	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGGCTCAGTGAATAAAGT	NA	False	NA	NA	False	AATAAA	-23	NA	135661471	135675230	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_135661773_135664848_135665257_135667943_135668095_135671883
transcript_74131.known	chr5	+	867	3	FSM	ENSMUSG00000039917.11	ENSMUST00000129134.2	867	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	5.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTTGCCCAGGCCAGCT	NA	False	NA	NA	False	NA	NA	NA	135661576	135665399	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_135661773_135663957_135664078_135664848
transcript_74135.nic	chr5	+	2555	16	NIC	ENSMUSG00000005514.15	novel	918	8	NA	NA	-52	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	64.9938116712319	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCTGGTGTTGATTGAG	1582	False	NA	14	True	AATAAA	-14	NA	135698834	135764180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_135698971_135744725_135744918_135757515_135757565_135758252_135758382_135759082_135759233_135759697_135759823_135759946_135760037_135760416_135760516_135761336_135761454_135761539_135761659_135762355_135762538_135762626_135762777_135762880_135763152_135763236_135763383_135763474_135763561_135763666
transcript_74136.known	chr5	+	2636	16	FSM	ENSMUSG00000005514.15	ENSMUST00000005651.13	2636	16	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_9	23.2776478384069	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCTGGTGTTGATTGAG	1901	False	NA	14	True	AATAAA	-14	NA	135717889	135764180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_135718107_135744725_135744918_135757515_135757565_135758252_135758382_135759082_135759233_135759697_135759823_135759946_135760037_135760416_135760516_135761336_135761454_135761539_135761659_135762355_135762538_135762626_135762777_135762880_135763152_135763236_135763383_135763474_135763561_135763666
transcript_74138.nnic	chr5	-	574	3	NNC	ENSMUSG00000105239.2	novel	423	4	NA	NA	15822	175	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.5	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAACAAAGGCCTCCCCTTT	NA	False	NA	NA	False	AATAAA	-29	NA	135686019	135682488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_135682772_135684801_135684952_135685878
transcript_74144.known	chr5	-	1559	12	FSM	ENSMUSG00000039886.9	ENSMUST00000043378.9	1559	12	0	0	0	0	multi-exon	FALSE	canonical	3	674	junction_10	35.0345756018723	1005	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGATGGACTGTGGATGTG	5063	False	NA	-4	True	AATAAA	-21	NA	135773302	135764338	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_135764660_135764750_135764820_135764923_135764989_135765107_135765201_135765294_135765357_135765450_135765517_135765599_135765690_135765771_135765868_135766043_135766104_135770819_135770937_135771134_135771254_135772901
transcript_74170.known	chr5	+	1456	9	FSM	ENSMUSG00000019179.11	ENSMUST00000019323.11	1456	9	0	0	0	0	multi-exon	FALSE	canonical	3	4657	junction_8	277.596267085853	10062	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCTGTAGATTTCCTTT	453	False	NA	38	True	AGTAAA	-25	NA	135807333	135819245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_135807656_135812158_135812328_135813037_135813122_135814782_135814893_135815086_135815213_135816394_135816473_135818054_135818155_135818479_135818632_135818930
transcript_74172.known	chr5	+	903	3	FSM	ENSMUSG00000004951.11	ENSMUST00000005077.7	903	3	0	0	0	0	multi-exon	FALSE	canonical	3	2181	junction_2	11	2612	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGACTCCAGAGTTATTA	NA	False	NA	7	True	AATAAA	-25	NA	135916772	135918417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_135917289_135917902_135917967_135918094
transcript_74176.known	chr5	-	685	3	FSM	ENSMUSG00000051391.10	ENSMUST00000126639.2	685	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCAGCTGGAGTCCATGT	NA	False	NA	NA	False	ATTAAA	-9	NA	135963470	135959538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_135959804_135961370_135961497_135963176
transcript_74177.known	chr5	-	3520	2	FSM	ENSMUSG00000051391.10	ENSMUST00000055808.6	3520	2	0	0	0	0	multi-exon	FALSE	canonical	3	925	junction_1	0	1437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	-26	True	AATAAA	-14	NA	135963453	135937262	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_135940506_135963176
transcript_74178.known	chr5	-	417	2	FSM	ENSMUSG00000051391.10	ENSMUST00000126192.2	417	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTTCCTGAATTCTTAGAG	NA	False	NA	NA	False	NA	NA	NA	135963404	135959614	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_135959804_135963176
transcript_74179.known	chr5	-	2238	2	FSM	ENSMUSG00000051391.10	ENSMUST00000129581.2	2238	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGGAGTCCATGTCTGAT	NA	False	NA	NA	False	ATTAAA	-14	NA	135963451	135959533	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_135961497_135963176
transcript_7418.nnic	chr10	+	719	4	Antisense	novelGene_ENSMUSG00000058806.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	26.9608770051883	264	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCATTGCTACTTCATAA	NA	False	NA	22	True	NA	NA	NA	61670262	61710019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr10_+_61670501_61698165_61698280_61709460_61709561_61709752
transcript_74181.known	chr5	-	1191	3	FSM	ENSMUSG00000029699.14	ENSMUST00000054895.4	1191	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	7	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTTTTAACTGAGGTCAT	NA	False	NA	-8	True	AATAAA	-15	NA	135991181	135989077	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_135990063_135990742_135990821_135991053
transcript_74182.known	chr5	-	459	2	FSM	ENSMUSG00000029699.14	ENSMUST00000111150.2	459	2	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCCTATGATAGCTCGGG	NA	False	NA	NA	False	NA	NA	NA	135991125	135989675	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_135990063_135991053
transcript_74183.known	chr5	+	1323	8	FSM	ENSMUSG00000004948.13	ENSMUST00000005073.13	1323	8	0	0	0	0	multi-exon	TRUE	canonical	3	12	junction_4	3.97953950776689	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGAGTGTGGTTTAATG	NA	False	NA	NA	False	AATAAA	-13	NA	136008952	136017478	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_136009297_136011492_136011612_136013015_136013120_136013201_136013386_136014398_136014517_136016108_136016201_136016325_136016463_136017253
transcript_74184.known	chr5	+	2650	11	FSM	ENSMUSG00000004947.16	ENSMUST00000111142.9	2650	11	0	0	0	0	multi-exon	TRUE	canonical	3	47	junction_6	35.5758344947803	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTGGGAAGTTTTGTGT	8459	False	NA	16	True	AATAAA	-21	NA	136023653	136061726	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_136023821_136025143_136025307_136038867_136039211_136040864_136041502_136050608_136050713_136055323_136055462_136057352_136057427_136057917_136058077_136059333_136059496_136060039_136060130_136061113
transcript_74185.known	chr5	+	2493	10	FSM	ENSMUSG00000004947.16	ENSMUST00000111145.10	2493	10	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_5	18.5279235376575	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGCATCTGTTGGGAAG	8470	False	NA	8	True	AATAAA	-13	NA	136023664	136061718	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_136023821_136025143_136025307_136038867_136039211_136040864_136041502_136050608_136050713_136057352_136057427_136057917_136058077_136059333_136059496_136060039_136060130_136061113
transcript_74188.known	chr5	+	671	4	FSM	ENSMUSG00000006143.13	ENSMUST00000139549.2	671	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCATCTTACATATACCTG	4809	False	NA	NA	False	AATAAA	-20	NA	136088901	136093164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_136089136_136090036_136090114_136090360_136090482_136092925
transcript_74189.nic	chr5	+	697	4	ISM	ENSMUSG00000006143.13	ENSMUST00000156530.8	1035	6	2761	0	-20	0	3prime_fragment	FALSE	canonical	0	0	junction_3	0.471404520791032	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATATACCTGGGTTCATCT	4789	False	NA	NA	False	AATAAA	-29	NA	136088881	136093173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_136089136_136090036_136090114_136090360_136090482_136092928
transcript_74190.known	chr5	+	2914	21	FSM	ENSMUSG00000004952.14	ENSMUST00000042135.14	2914	21	0	0	0	0	multi-exon	TRUE	canonical	3	36	junction_7	10.6273232754067	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGAGGTGTTGGGTTGGG	2152	False	NA	NA	False	AATAAA	-20	NA	136112769	136140714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_136113032_136118206_136118264_136120047_136120162_136120601_136120664_136121991_136122122_136124380_136124463_136125514_136125647_136127541_136127634_136129755_136129874_136130097_136130249_136130478_136130544_136130798_136130912_136131088_136131282_136131381_136131520_136132133_136132279_136132690_136132861_136133369_136133508_136134457_136134594_136135924_136136046_136140105_136140171_136140284
transcript_74194.known	chr5	-	2473	15	FSM	ENSMUSG00000029703.11	ENSMUST00000006301.11	2473	15	0	0	0	0	multi-exon	FALSE	canonical	3	342	junction_8	23.380722043284	749	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCCTTCTTGCTTGTCCT	6684	False	NA	NA	False	NA	NA	NA	136164928	136151625	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_136152170_136152256_136152367_136152453_136152610_136152720_136152813_136159074_136159216_136159316_136159390_136159827_136160036_136160306_136160417_136160965_136161081_136161159_136161283_136161828_136161934_136162158_136162300_136162787_136162905_136163352_136163588_136164725
transcript_74207.known	chr5	+	474	3	FSM	ENSMUSG00000039771.14	ENSMUST00000111129.2	474	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	632.5	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAAATGGGGCTGTGCAG	9283	False	NA	19	True	AATAAA	-8	NA	136145555	136151790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_136145660_136150942_136151118_136151595
transcript_74208.known	chr5	+	646	4	FSM	ENSMUSG00000039771.14	ENSMUST00000041366.14	646	4	0	0	0	0	multi-exon	FALSE	canonical	3	1103	junction_2	77.5471182930453	7794	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGCAGTGTGTGGACTG	9212	False	NA	30	True	AATAAA	-19	NA	136145484	136151801	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_136145660_136148848_136148939_136150942_136151118_136151595
transcript_74209.known	chr5	+	1773	3	FSM	ENSMUSG00000039754.11	ENSMUST00000041100.4	1773	3	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_2	0.5	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGAATTTCTCCTTTTCC	NA	False	NA	NA	False	AATAAA	-23	NA	136165007	136170466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_136165149_136168191_136168390_136169032
transcript_74210.known	chr5	+	557	3	FSM	ENSMUSG00000039754.11	ENSMUST00000136634.8	557	3	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	26.5	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTCCTAGCAGGTCTGTC	NA	False	NA	NA	False	NA	NA	NA	136164999	136169366	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_136165149_136168315_136168390_136169032
transcript_74211.known	chr5	+	1040	3	FSM	ENSMUSG00000039754.11	ENSMUST00000125923.2	1040	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	27.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGGAGCTGTCACTGGCC	NA	False	NA	NA	False	NA	NA	NA	136165011	136169632	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_136165254_136168191_136168390_136169032
transcript_74212.nnic	chr5	+	1679	3	NNC	ENSMUSG00000039754.11	novel	1773	3	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	29.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATTTCTCCTTTTCCCAT	NA	False	NA	NA	False	AATAAA	-26	NA	136165013	136170469	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_136165149_136168282_136168390_136169032
transcript_74216.known	chr5	-	3893	6	FSM	ENSMUSG00000039737.12	ENSMUST00000151786.8	3893	6	0	0	0	0	multi-exon	FALSE	canonical	3	446	junction_2	42.6164287569946	1827	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCACTTTTGGTTAGTGTTT	NA	False	NA	-3	True	NA	NA	NA	136227817	136206980	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_136210351_136218405_136218474_136220753_136220840_136223150_136223252_136226633_136226713_136227628
transcript_74217.known	chr5	-	626	4	FSM	ENSMUSG00000039737.12	ENSMUST00000040980.12	626	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	256.464855725345	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCTTGTCCACACGTGCG	NA	False	NA	-13	True	AGTAAA	-16	NA	136227764	136209937	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_136210351_136218405_136218474_136226703_136226713_136227628
transcript_74218.known	chr5	-	2831	23	FSM	ENSMUSG00000029705.18	ENSMUST00000176745.8	2831	23	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_13	14.4244970693081	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGTCTTTTATTCTGTG	NA	False	NA	-1	True	AATAAA	-18	NA	136596118	136276988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_136277835_136278021_136278087_136279377_136279459_136280224_136280282_136281396_136281481_136282920_136283038_136285085_136285199_136285653_136285721_136286766_136286895_136343160_136343258_136344852_136344902_136348634_136348694_136355603_136355787_136361477_136361583_136368942_136368992_136388855_136388923_136392112_136392190_136398971_136399096_136402175_136402314_136421168_136421248_136436833_136436882_136514594_136514706_136596031
transcript_74223.known	chr5	-	1616	7	FSM	ENSMUSG00000029705.18	ENSMUST00000176501.2	1616	7	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_3	12.4588210606872	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	136596106	136391148	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_136392190_136398971_136399096_136402175_136402314_136421168_136421248_136436833_136436882_136514594_136514706_136596031
transcript_74224.known	chr5	+	607	5	FSM	ENSMUSG00000005474.10	ENSMUST00000197186.2	607	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.433012701892219	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCTGAGTGATGTTTGCGT	NA	False	NA	NA	False	AATAAA	-16	NA	136723030	136729948	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_136723165_136724208_136724314_136726786_136726866_136729555_136729605_136729708
transcript_74227.nic	chr5	-	2082	8	ISM	ENSMUSG00000004415.16	ENSMUST00000057497.13	2724	13	128032	0	303	0	3prime_fragment	FALSE	canonical	3	37	junction_4	3.15581743348207	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTCTGTGGCTTGTCAG	NA	False	NA	0	True	AATAAA	-19	NA	136783943	136770612	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_136772061_136773016_136773102_136775874_136775923_136777177_136777214_136778118_136778172_136780522_136780607_136783046_136783200_136783768
transcript_74232.nnic	chr5	+	1424	4	Antisense	novelGene_ENSMUSG00000004415.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	3.09120616516523	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGCTGATCTTGGCCATG	NA	False	NA	NA	False	NA	NA	NA	136743256	136778890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr5_+_136743490_136774222_136774384_136777293_136777375_136777941
transcript_74235.nnic	chr5	+	813	4	Antisense	novelGene_ENSMUSG00000004415.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	8	junction_1	0.816496580927726	27	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGCTCTCATACTCCAATC	NA	False	NA	NA	False	CATAAA	-15	NA	136766512	136778334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr5_+_136766691_136774222_136774384_136777293_136777375_136777941
transcript_74237.nnic	chr5	+	1369	4	Antisense	novelGene_ENSMUSG00000004415.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	8	junction_1	0.816496580927726	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGCTGATCTTGGCCATG	NA	False	NA	NA	False	NA	NA	NA	136766512	136778890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr5_+_136766691_136774222_136774384_136777293_136777375_136777941
transcript_74240.known	chr5	+	670	4	FSM	ENSMUSG00000007987.13	ENSMUST00000200153.5	670	4	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_3	7.34846922834953	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTAAAAGTTTTTTCATAG	4107	False	NA	NA	False	NA	NA	NA	136937055	136940976	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_136937125_136939977_136940055_136940155_136940246_136940542
transcript_74246.known	chr5	+	617	4	FSM	ENSMUSG00000097908.8	ENSMUST00000197095.5	617	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_3	17.326921891156	1011	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCTTCATCTATGGTCT	NA	False	NA	NA	False	NA	NA	NA	136948205	136962539	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_136948286_136951160_136951282_136954557_136954750_136962315
transcript_74247.known	chr5	+	3967	4	FSM	ENSMUSG00000097908.8	ENSMUST00000181045.8	3967	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_3	24.0878023535196	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTCAGCCTCGCTTTTTT	NA	False	NA	24	True	AATAAA	-13	NA	136947999	136965960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_136948286_136951160_136951282_136954557_136954750_136962592
transcript_74261.known	chr5	+	786	5	FSM	ENSMUSG00000019054.14	ENSMUST00000019198.7	786	5	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_1	76.6823806359714	2321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGTGTGAGCGAGCA	3268	False	NA	20	True	AATAAA	-21	NA	136990930	136995088	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_136991083_136991852_136991986_136993946_136994024_136994418_136994525_136994770
transcript_74266.known	chr5	+	601	4	FSM	ENSMUSG00000019054.14	ENSMUST00000111097.8	601	4	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	234.963827003222	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCCTCTTAGCCCCTGC	4182	False	NA	-65	True	NA	NA	NA	136982259	136995003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_136982445_136993946_136994024_136994418_136994525_136994770
transcript_74271.known	chr5	+	948	5	FSM	ENSMUSG00000019054.14	ENSMUST00000111094.8	948	5	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	181.92443486239	1987	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCTGTGTGTGAGCGAG	4051	False	NA	18	True	AATAAA	-19	NA	136982128	136995086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_136982445_136991852_136991986_136993946_136994024_136994418_136994525_136994770
transcript_74277.known	chr5	+	3280	19	FSM	ENSMUSG00000004846.11	ENSMUST00000004968.11	3280	19	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	18.3673926051335	173	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATTTGTGAGTGTGTG	NA	False	NA	NA	False	ATTAAA	-24	NA	137015872	137025502	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_137016658_137016970_137017063_137017188_137017326_137017425_137017590_137017736_137017850_137017979_137018044_137018451_137018550_137018750_137018853_137019004_137019131_137019271_137019394_137019598_137019704_137019812_137019939_137020153_137020296_137020397_137020512_137020625_137020695_137022062_137022168_137022996_137023144_137023786_137023913_137024959
transcript_74282.known	chr5	-	1070	6	FSM	ENSMUSG00000059518.15	ENSMUST00000111091.8	1070	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	147.746268988425	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAAACTACCCATTCACCC	NA	False	NA	-125	True	NA	NA	NA	137016086	137011174	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_137011272_137011371_137011542_137011721_137011802_137013732_137013904_137014979_137015110_137015664
transcript_74285.known	chr5	-	1208	5	FSM	ENSMUSG00000059518.15	ENSMUST00000156963.8	1208	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	134.024251536802	1660	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGGTCAGGGTTGACTG	NA	False	NA	32	True	NA	NA	NA	137016875	137011017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_137011272_137011371_137011542_137011721_137011802_137013732_137013904_137016342
transcript_74290.known	chr5	-	698	4	FSM	ENSMUSG00000059518.15	ENSMUST00000111090.9	698	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	144.270579121316	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTGCCCTGCCGACCAA	NA	False	NA	-100	True	NA	NA	NA	137016397	137011149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_137011542_137011721_137011802_137013732_137013904_137016342
transcript_74292.known	chr5	-	740	5	FSM	ENSMUSG00000059518.15	ENSMUST00000085941.12	740	5	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_4	104.169033306449	1799	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTCATTCTGGGGTAT	NA	False	NA	6	True	AATAAA	-22	NA	137015755	137011043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_137011272_137011371_137011542_137011721_137011802_137013732_137013904_137015664
transcript_74293.known	chr5	-	764	4	FSM	ENSMUSG00000059518.15	ENSMUST00000034953.14	764	4	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_3	111.749720357592	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTGCTCATTCTGGG	NA	False	NA	2	True	AATAAA	-18	NA	137015683	137011047	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_137011542_137011721_137011802_137013732_137013904_137015664
transcript_74305.known	chr5	-	1353	5	FSM	ENSMUSG00000004849.15	ENSMUST00000111080.8	1353	5	0	0	0	0	multi-exon	FALSE	canonical	3	639	junction_4	57.0586321252096	4063	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCCTTGGCTTTGTTGG	NA	False	NA	1	True	AATAAA	-25	NA	137074989	137063846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_137064646_137066271_137066410_137070622_137070732_137071917_137072097_137074861
transcript_74306.known	chr5	-	955	5	FSM	ENSMUSG00000037390.14	ENSMUST00000160630.2	955	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.29903810567666	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCATTCAATGTAAATACAAT	NA	False	NA	NA	False	ATTAAA	-15	NA	137167975	137163808	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_137164334_137165904_137165985_137166772_137166871_137167035_137167198_137167885
transcript_74309.known	chr5	+	1037	1	FSM	ENSMUSG00000051502.8	ENSMUST00000052825.7	1037	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	192	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGGCCCAGCCTGTGTTT	1544	False	NA	7	True	NA	NA	NA	137292890	137293927	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_137292900_137293900
transcript_7431.nnic	chr10	+	601	3	Antisense	novelGene_ENSMUSG00000058806.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	26	junction_2	20	261	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCCAACTGTAAAATGAGT	NA	False	NA	4	True	NA	NA	NA	61670262	61710001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr10_+_61670501_61698165_61698280_61709752
transcript_74311.known	chr5	-	2972	20	FSM	ENSMUSG00000037364.13	ENSMUST00000197466.5	2972	20	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_3	165.9658376889	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAACTGTGTGCTGTATG	8265	False	NA	-12	True	AGTAAA	-18	NA	137305928	137293976	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_137294169_137294248_137294355_137294479_137294570_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
transcript_74313.known	chr5	-	3024	20	FSM	ENSMUSG00000037364.13	ENSMUST00000040873.12	3024	20	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	186.551382419291	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTATGTCCCTTCCCAA	8257	False	NA	-1	True	AGTAAA	-29	NA	137305936	137293965	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_137294169_137294248_137294376_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
transcript_74318.nic	chr5	-	1245	7	ISM	ENSMUSG00000037364.13	ENSMUST00000197466.5	2972	20	-57	4267	-49	-109	5prime_fragment	FALSE	canonical	3	627	junction_2	39.679619733841	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGATGGAAAACAGGTCGA	8208	False	NA	15	True	AAGAAA	-1	NA	137305985	137298243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
transcript_74319.known	chr5	-	3001	19	FSM	ENSMUSG00000037364.13	ENSMUST00000198526.5	3001	19	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	246.227361558879	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTAACTGTGTGCTGTA	8510	False	NA	-14	True	AGTAAA	-16	NA	137305683	137293978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_137294169_137294248_137294376_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298010_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307
transcript_74320.known	chr5	-	2168	9	FSM	ENSMUSG00000023348.12	ENSMUST00000024119.11	2168	9	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_6	14.9248115565993	391	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATTTCTGCTGGTCTTTCA	1527	False	NA	NA	False	CATAAA	-41	NA	137312666	137307915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_137308437_137308546_137308668_137308914_137309094_137310135_137310306_137310401_137310496_137310967_137311352_137311612_137311739_137311842_137311971_137312221
transcript_74329.known	chr5	-	3330	14	FSM	ENSMUSG00000037344.15	ENSMUST00000039991.14	3330	14	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	4.75307437100782	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCTGGTGGAGCACTGCT	6501	False	NA	0	True	AATAAA	-15	NA	137331859	137312819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_137314100_137319655_137319803_137320657_137320833_137320977_137321171_137321308_137321434_137323584_137323668_137323778_137323937_137325632_137325745_137325858_137325967_137326698_137327008_137329204_137329337_137330387_137330523_137330717_137330941_137331709
transcript_74336.nic	chr5	-	576	3	ISM	ENSMUSG00000079173.12	ENSMUST00000164178.2	16451	87	81962	14410	7105	5487	internal_fragment	FALSE	canonical	3	9	junction_2	1	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGACTGCAAAGACTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	137392895	137391308	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_137391490_137391800_137391943_137392642
transcript_74338.known	chr5	-	2114	8	FSM	ENSMUSG00000079173.12	ENSMUST00000130056.2	2114	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.04978131833565	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGGCAGTGAAGGTTAT	NA	False	NA	NA	False	NA	NA	NA	137448885	137434130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_137435100_137435981_137436124_137436701_137436908_137440288_137440466_137442143_137442239_137443623_137443736_137444878_137445127_137448720
transcript_74339.known	chr5	-	1860	10	FSM	ENSMUSG00000029713.16	ENSMUST00000031726.15	1860	10	0	0	0	0	multi-exon	FALSE	canonical	3	634	junction_9	47.0030206541801	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGTCTCCTTGCTTACTG	1532	False	NA	-5	True	CATAAA	-22	NA	137531772	137526388	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_137526872_137526952_137527170_137527265_137527468_137527704_137527772_137527864_137528028_137528107_137528172_137528445_137528553_137528659_137528699_137528956_137529103_137531400
transcript_74341.known	chr5	-	988	1	FSM	ENSMUSG00000029715.6	ENSMUST00000111035.2	988	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	299	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGCTTCGAATGGCCTCT	1732	False	NA	-32	True	AATAAA	-20	NA	137500687	137499699	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_137499700_137500700
transcript_74342.known	chr5	+	956	1	FSM	ENSMUSG00000105851.2	ENSMUST00000197965.2	956	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGACTCAACTGTCTTAG	NA	False	NA	NA	False	AATAAA	-30	NA	137500934	137501890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_137500900_137501900
transcript_74343.known	chr5	-	881	2	FSM	ENSMUSG00000029715.6	ENSMUST00000031728.5	881	2	0	0	0	0	multi-exon	FALSE	canonical	3	320	junction_1	0	2601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGGCTTCGAATGGCCTC	1639	False	NA	-33	True	AATAAA	-19	NA	137500780	137499700	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_137500342_137500540
transcript_74344.known	chr5	-	712	2	FSM	ENSMUSG00000029713.16	ENSMUST00000167225.2	712	2	0	0	0	0	multi-exon	FALSE	canonical	3	709	junction_1	0	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTAGTCTCCTTGCTTACT	6122	False	NA	-6	True	CATAAA	-21	NA	137527182	137526389	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_137526872_137526952
transcript_74345.known	chr5	-	1470	9	FSM	ENSMUSG00000029713.16	ENSMUST00000111020.8	1470	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	239.131240117221	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCCATAAAGGAACCACTT	1745	False	NA	20	True	NA	NA	NA	137531559	137526419	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_137526872_137526952_137527170_137527265_137527468_137527704_137527772_137527864_137528028_137528107_137528172_137528445_137528553_137528659_137528699_137531400
transcript_74362.nnic	chr5	-	1319	7	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	111.835320399634	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9583	False	NA	-10	True	ATTAAA	-21	NA	137599355	137594906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_137594991_137595176_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532_137598806_137599003
transcript_74367.nnic	chr5	-	1443	7	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	111.835320399634	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9583	False	NA	-10	True	ATTAAA	-21	NA	137599355	137594906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_137595005_137595066_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532_137598806_137599003
transcript_74368.nnic	chr5	-	1212	7	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	-53	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	114.841073759445	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9565	False	NA	-10	True	ATTAAA	-21	NA	137599373	137594906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_137595005_137595066_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532_137598806_137599252
transcript_74388.nnic	chr5	-	1501	6	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	-19	0	intron_retention	TRUE	non_canonical	0	0	junction_1	101.456197445006	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9599	False	NA	-10	True	ATTAAA	-21	NA	137599339	137594906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_137594991_137595176_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532
transcript_74396.nnic	chr5	-	1625	6	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	-19	0	intron_retention	TRUE	non_canonical	0	0	junction_1	101.456197445006	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9599	False	NA	-10	True	ATTAAA	-21	NA	137599339	137594906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_137595005_137595066_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532
transcript_74402.nnic	chr5	-	1158	6	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	101.456197445006	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9938	False	NA	-10	True	ATTAAA	-21	NA	137599000	137594906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_137595020_137595209_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532
transcript_74404.nnic	chr5	-	1629	6	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	-19	0	intron_retention	TRUE	non_canonical	0	0	junction_1	101.456197445006	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9599	False	NA	-10	True	ATTAAA	-21	NA	137599339	137594906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_137595026_137595083_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532
transcript_74406.nnic	chr5	-	1287	6	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	-14	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	101.456197445006	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9938	False	NA	-10	True	ATTAAA	-21	NA	137599000	137594906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_137595054_137595114_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532
transcript_7441.known	chr10	-	1493	4	FSM	ENSMUSG00000020083.14	ENSMUST00000124615.8	1493	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	54.9322815433289	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCCGGTGAATGACTGAC	NA	False	NA	-10	True	AATAAA	-21	NA	61946747	61943988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_61944903_61945662_61945792_61946014_61946094_61946376
transcript_74412.known	chr5	-	1318	5	FSM	ENSMUSG00000037221.14	ENSMUST00000111007.8	1318	5	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_3	14.7054411698527	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9968	False	NA	-10	True	ATTAAA	-21	NA	137598970	137594906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532
transcript_74414.known	chr5	-	1456	6	FSM	ENSMUSG00000037221.14	ENSMUST00000037620.14	1456	6	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_5	88.3841614770429	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9632	False	NA	-10	True	ATTAAA	-21	NA	137599306	137594906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532_137598806_137599003
transcript_74415.known	chr5	+	580	1	FSM	ENSMUSG00000105408.2	ENSMUST00000198801.2	580	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	199	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAAAGAAAATGACTGAATA	2844	False	NA	NA	False	NA	NA	NA	137599854	137600434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_137599900_137600400
transcript_7442.known	chr10	-	1769	4	FSM	ENSMUSG00000020083.14	ENSMUST00000125704.8	1769	4	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_3	8.33999733546454	551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCAGATCTTGAATTCG	NA	False	NA	NA	False	NA	NA	NA	61946829	61943433	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_61944903_61945662_61945792_61946014_61946094_61946737
transcript_74420.nic	chr5	-	1656	8	ISM	ENSMUSG00000029718.15	ENSMUST00000031731.14	1626	9	699	2	-86	0	3prime_fragment	FALSE	canonical	3	423	junction_6	64.4265124789793	506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGATCGTGTCTGAGGTTCT	4722	False	NA	-4	True	AATAAA	-19	NA	137609050	137603366	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_137603580_137603718_137603890_137603984_137604063_137605088_137605370_137605669_137605807_137606216_137606342_137607152_137607412_137608658
transcript_74427.nic	chr5	-	1195	7	ISM	ENSMUSG00000029718.15	ENSMUST00000054564.13	1585	10	2570	-3	-614	0	3prime_fragment	FALSE	canonical	3	52	junction_6	194.602729226037	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGATCGTGTCTGAGGTTCT	6704	False	NA	-4	True	AATAAA	-19	NA	137607068	137603366	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_137603580_137603718_137603890_137603984_137604063_137605088_137605370_137605669_137605807_137606216_137606342_137606878
transcript_74433.known	chr5	-	1626	9	FSM	ENSMUSG00000029718.15	ENSMUST00000031731.14	1626	9	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_8	116.165560731225	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGTGTCTGAGGTTCTGT	4023	False	NA	-2	True	AATAAA	-21	NA	137609749	137603364	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_137603580_137603718_137603890_137603984_137604063_137605088_137605370_137605669_137605807_137606216_137606342_137607152_137607412_137608658_137608768_137609498
transcript_74434.known	chr5	-	1585	10	FSM	ENSMUSG00000029718.15	ENSMUST00000054564.13	1585	10	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_7	224.611763815799	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGGATCGTGTCTGAGGT	4134	False	NA	-7	True	AATAAA	-16	NA	137609638	137603369	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_137603580_137603718_137603890_137603984_137604063_137605088_137605370_137605669_137605807_137606216_137606342_137606878_137606954_137607152_137607412_137608658_137608768_137609498
transcript_74435.known	chr5	-	801	4	FSM	ENSMUSG00000029718.15	ENSMUST00000142675.8	801	4	0	0	0	0	multi-exon	FALSE	canonical	3	423	junction_2	35.3490531069158	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTTGCGGAGACAAGGC	4808	False	NA	NA	False	NA	NA	NA	137608964	137605695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_137605807_137606216_137606342_137607152_137607412_137608658
transcript_74439.known	chr5	+	3078	18	FSM	ENSMUSG00000093445.8	ENSMUST00000031734.16	3078	18	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_8	20.6479805391719	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCAGGTGTGTGCCTGCC	2184	False	NA	25	True	AATAAA	-27	NA	137627382	137639356	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_137627689_137631833_137631979_137632110_137632238_137632405_137632512_137635000_137635138_137635246_137635360_137635474_137635575_137635806_137635898_137635987_137636065_137636166_137636229_137636327_137636445_137636554_137636624_137636700_137636805_137636916_137637001_137637383_137637461_137637611_137637750_137637839_137637918_137638209
transcript_7444.known	chr10	-	1135	3	FSM	ENSMUSG00000020083.14	ENSMUST00000142796.8	1135	3	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	41.5	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCCGGTGAATGACTGAC	NA	False	NA	-10	True	AATAAA	-21	NA	61946829	61943988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_61944903_61945662_61945792_61946737
transcript_74444.known	chr5	+	1005	6	FSM	ENSMUSG00000079165.11	ENSMUST00000177466.8	1005	6	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	39.5858560599616	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTGTTGACAATAAATCA	1101	False	NA	-8	True	NA	NA	NA	137639595	137641130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_137639819_137639983_137640079_137640171_137640276_137640357_137640497_137640602_137640701_137640784
transcript_74449.known	chr5	+	4464	22	FSM	ENSMUSG00000029720.10	ENSMUST00000177545.2	4464	22	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_21	33.9740463834439	342	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGCTGTCTGCAGTGGGA	2238	False	NA	23	True	AATAAA	-15	NA	137627436	137641161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_137627689_137631833_137631979_137632110_137632238_137632405_137632512_137635000_137635138_137635246_137635360_137635474_137635575_137635806_137635898_137635987_137636065_137636166_137636229_137636327_137636445_137636554_137636624_137636700_137636805_137636916_137637001_137637383_137637461_137637611_137637750_137637839_137637918_137638209_137640079_137640171_137640276_137640357_137640497_137640602_137640701_137640784
transcript_7445.known	chr10	+	1540	2	FSM	ENSMUSG00000044312.5	ENSMUST00000050103.2	1540	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGGAAAAAAAAAGAAA	9264	False	NA	NA	False	NA	NA	NA	61968868	61970542	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_61969107_61969240
transcript_74450.known	chr5	+	1101	5	FSM	ENSMUSG00000079165.11	ENSMUST00000166099.3	1101	5	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_4	13.4976849866931	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGTCTGCAGTGGGACAT	1204	False	NA	26	True	AATAAA	-18	NA	137639698	137641164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_137640079_137640171_137640276_137640357_137640497_137640602_137640701_137640784
transcript_74451.known	chr5	-	2337	2	FSM	ENSMUSG00000047182.7	ENSMUST00000057314.4	2337	2	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTCTTGCTCAATGGATC	6588	False	NA	NA	False	ATTAAA	-17	NA	137643976	137641293	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_137643007_137643352
transcript_74452.known	chr5	-	2858	13	FSM	ENSMUSG00000029722.16	ENSMUST00000100544.11	2858	13	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_7	43.0686628794327	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	1810	False	NA	NA	False	NA	NA	NA	137682942	137648746	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_137650085_137650691_137650778_137652024_137652154_137653400_137653482_137653591_137653675_137653869_137653991_137658423_137658457_137659625_137659755_137661697_137661867_137662477_137662635_137665322_137665439_137665942_137666037_137682620
transcript_74455.known	chr5	-	2893	12	FSM	ENSMUSG00000029722.16	ENSMUST00000031736.16	2893	12	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_6	17.5678142969908	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGAGTGTCTTGTTTTG	1764	False	NA	NA	False	NA	NA	NA	137682988	137648724	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_137650085_137650691_137650778_137652024_137652154_137653400_137653482_137653591_137653675_137653869_137653991_137659625_137659755_137661697_137661867_137662477_137662635_137665322_137665439_137665942_137666037_137682620
transcript_74461.known	chr5	-	1497	5	FSM	ENSMUSG00000029722.16	ENSMUST00000138604.2	1497	5	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_3	10.3289641300568	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGGGCTGGAGAGATGGCT	1797	False	NA	NA	False	NA	NA	NA	137682955	137661071	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_137661867_137662477_137662635_137665322_137665439_137665942_137666037_137682620
transcript_74465.known	chr5	+	3983	5	FSM	ENSMUSG00000029723.17	ENSMUST00000100539.10	3983	5	0	0	0	0	multi-exon	FALSE	canonical	3	319	junction_1	32.7595405950694	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGCTGAGCCATCTCTCC	NA	False	NA	NA	False	NA	NA	NA	137744257	137759670	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_137744677_137745109_137746122_137749469_137749631_137756945_137756995_137757328
transcript_74470.nnic	chr5	+	1041	4	NNC	ENSMUSG00000029723.17	novel	402	2	NA	NA	2393	201	at_least_one_novel_splicesite	FALSE	canonical	2	17	junction_1	175.655597374205	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGAGGTTGGTGTGCTGT	5	True	NA	13	True	ATTAAA	-24	NA	137746650	137758011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_137746799_137749469_137749631_137756945_137756995_137757328
transcript_74473.known	chr5	+	2730	6	FSM	ENSMUSG00000029723.17	ENSMUST00000100540.10	2730	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	171.869252631179	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGATGTAGTCTGTGGTCA	NA	False	NA	NA	False	AATAAA	-17	NA	137743991	137766712	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_137744677_137745109_137746122_137749469_137749631_137756945_137756995_137760637_137760971_137766222
transcript_74475.nic	chr5	+	752	4	NIC	ENSMUSG00000029725.11	novel	430	3	NA	NA	-65	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_1	179.735608294208	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCGAACTGTTCTTGGGA	NA	False	NA	5	True	AATAAA	-18	NA	137777045	137778372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_137777160_137777563_137777808_137777887_137778025_137778115
transcript_74477.known	chr5	+	956	4	FSM	ENSMUSG00000029725.11	ENSMUST00000031739.6	956	4	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_1	53.8970211504206	1045	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCGAACTGTTCTTGGGA	NA	False	NA	5	True	AATAAA	-18	NA	137777165	137778372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_137777484_137777563_137777808_137777887_137778025_137778115
transcript_74483.known	chr5	+	430	3	FSM	ENSMUSG00000029725.11	ENSMUST00000126126.8	430	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	199	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAAGGAAGGGATGCAGGG	NA	False	NA	NA	False	NA	NA	NA	137777110	137778024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_137777160_137777563_137777808_137777887
transcript_74485.nic	chr5	+	1095	3	ISM	ENSMUSG00000029725.11	ENSMUST00000031739.6	956	4	-48	0	7	0	intron_retention	FALSE	canonical	3	301	junction_1	64	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCGAACTGTTCTTGGGA	NA	False	NA	5	True	AATAAA	-18	NA	137777117	137778372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_137777484_137777563_137777808_137777887
transcript_7449.known	chr10	-	3638	8	FSM	ENSMUSG00000037031.11	ENSMUST00000047883.11	3638	8	0	0	0	0	multi-exon	TRUE	canonical	3	242	junction_7	11.6303613925986	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTCTGGTGTTTTATCA	4876	False	NA	NA	False	NA	NA	NA	62067030	62021174	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_62023942_62024421_62024539_62025592_62025641_62027246_62027364_62029645_62029742_62037556_62037632_62038858_62039045_62066798
transcript_74491.known	chr5	+	476	2	FSM	ENSMUSG00000029725.11	ENSMUST00000152298.2	476	2	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_1	0	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCGAACTGTTCTTGGGA	NA	False	NA	5	True	AATAAA	-18	NA	137777805	137778372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_137778025_137778115
transcript_74492.known	chr5	-	524	4	FSM	ENSMUSG00000029726.17	ENSMUST00000132726.2	524	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	65.2703778311588	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTTCTGAGAAGTTGTAAA	2674	False	NA	NA	False	NA	NA	NA	137784977	137780690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_137780747_137780856_137780984_137781391_137781611_137784855
transcript_74493.nic	chr5	-	1209	4	NIC	ENSMUSG00000029726.17	novel	3128	4	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	72.2280339541988	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGTCCAGCACTTTCTA	1711	False	NA	-6	True	AATAAA	-29	NA	137785940	137780167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_137780747_137780856_137780984_137781391_137781611_137785656
transcript_74496.known	chr5	+	2222	17	FSM	ENSMUSG00000037108.14	ENSMUST00000035852.14	2222	17	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_4	16.2498798072478	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGCTTTGTGTGTGTGT	7077	False	NA	32	True	AATAAA	-25	NA	137786059	137820883	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_137786208_137793752_137793808_137794833_137795079_137796159_137796236_137797769_137797864_137798247_137798406_137799235_137799359_137808277_137808395_137809074_137809196_137809836_137809913_137810263_137810363_137815154_137815239_137815719_137815787_137816059_137816155_137817225_137817287_137817703_137817839_137820415
transcript_74500.nic	chr5	+	2178	16	NIC	ENSMUSG00000037108.14	novel	2222	17	NA	NA	-40	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_11	25.4046364972136	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGCTTTGTGTGTGTGT	7037	False	NA	32	True	AATAAA	-25	NA	137786019	137820883	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_137786208_137793752_137793808_137794833_137795079_137796159_137796236_137797769_137797864_137798247_137798406_137799235_137799359_137808277_137808395_137809074_137809196_137809836_137809913_137810263_137810363_137815719_137815787_137816059_137816155_137817225_137817287_137817703_137817839_137820415
transcript_74507.nic	chr5	+	1073	2	ISM	ENSMUSG00000029729.13	ENSMUST00000019660.11	8261	6	0	13978	0	-10647	5prime_fragment	FALSE	canonical	3	15	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATTAATTCCTACTTT	NA	False	NA	NA	False	NA	NA	NA	138083345	138092106	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_138083494_138091181
transcript_74509.known	chr5	+	2310	5	FSM	ENSMUSG00000037017.16	ENSMUST00000110961.9	2310	5	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	38.7774096607806	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATGTATTTTATTGGGT	NA	False	NA	55	True	TATAAA	-6	NA	138115177	138132527	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_138115270_138116097_138116183_138123239_138123953_138124715_138124909_138131300
transcript_7451.known	chr10	+	2258	5	FSM	ENSMUSG00000020081.6	ENSMUST00000020278.6	2258	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.29903810567666	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATATATATATGTATATGT	NA	False	NA	NA	False	NA	NA	NA	62088216	62101769	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_62088989_62093936_62094132_62096950_62097105_62097262_62097460_62100829
transcript_74511.known	chr5	+	2252	5	FSM	ENSMUSG00000037017.16	ENSMUST00000062350.15	2252	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	46.7566840141599	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAGCGTCTCAGGACTGT	NA	False	NA	3	True	AATAAA	-12	NA	138115164	138132475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_138115251_138116097_138116183_138123239_138123953_138124715_138124909_138131300
transcript_74513.known	chr5	+	2204	4	FSM	ENSMUSG00000037017.16	ENSMUST00000110960.9	2204	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	50.6776303927307	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATGTATTTTATTGGGT	NA	False	NA	55	True	TATAAA	-6	NA	138115198	138132527	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_138115270_138123239_138123953_138124715_138124909_138131300
transcript_74514.known	chr5	+	496	4	FSM	ENSMUSG00000037017.16	ENSMUST00000142185.8	496	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	65.576079649688	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGAGCCAGCGTCTACTAG	NA	False	NA	NA	False	NA	NA	NA	138115241	138131509	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_138115251_138116097_138116183_138124715_138124909_138131300
transcript_74517.known	chr5	-	6470	5	FSM	ENSMUSG00000037007.18	ENSMUST00000049393.15	6470	5	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_2	1.4790199457749	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTGGACTTGGGTATCTG	1711	False	NA	-1	True	TTTAAA	-19	NA	138154006	138137963	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_138143975_138148868_138148996_138149466_138149559_138151106_138151232_138153891
transcript_74518.known	chr5	-	488	4	FSM	ENSMUSG00000037007.18	ENSMUST00000132318.2	488	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	8.05536398239638	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTGGAAGGCAGTTATGT	1751	False	NA	NA	False	AATAAA	-34	NA	138153966	138149188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_138149385_138149466_138149559_138151106_138151232_138153891
transcript_74521.known	chr5	+	3479	15	FSM	ENSMUSG00000019518.12	ENSMUST00000019662.11	3479	15	0	0	0	0	multi-exon	TRUE	canonical	3	48	junction_6	9.89356624586021	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTGGTGCATTCCTATA	8077	False	NA	18	True	NA	NA	NA	138170263	138178691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_138170511_138170610_138170700_138171048_138171156_138171233_138171331_138173011_138173123_138173205_138173287_138174173_138174237_138174313_138174381_138174471_138174526_138174873_138174981_138175078_138175174_138175417_138175463_138176184_138176236_138176330_138176443_138176538
transcript_7453.known	chr10	-	4278	18	FSM	ENSMUSG00000037012.19	ENSMUST00000099691.11	4278	18	0	0	0	0	multi-exon	FALSE	canonical	3	414	junction_15	35.8424078528779	410	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTTGGTTCAGACAAGGG	NA	False	NA	NA	False	AATAAA	-19	NA	62176321	62104633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_62105836_62107367_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
transcript_74533.known	chr5	-	2304	15	FSM	ENSMUSG00000036980.14	ENSMUST00000048698.14	2304	15	0	0	0	0	multi-exon	FALSE	canonical	3	362	junction_14	100.146932869985	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCCTCCCGCATCACA	1952	False	NA	-4	True	AATAAA	-18	NA	138185488	138176878	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185431
transcript_74535.known	chr5	-	2308	15	FSM	ENSMUSG00000036980.14	ENSMUST00000110936.8	2308	15	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_14	183.295568157341	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCCTCCCGCATCACA	9932	False	NA	-4	True	AATAAA	-18	NA	138185713	138176878	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185652
transcript_7456.known	chr10	+	343	3	FSM	ENSMUSG00000085347.2	ENSMUST00000142968.2	343	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTTCTGGGCATGCCTGT	NA	False	NA	NA	False	NA	NA	NA	62176400	62199146	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_62176563_62192024_62192139_62199079
transcript_7458.known	chr10	+	522	2	FSM	ENSMUSG00000085347.2	ENSMUST00000123457.2	522	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGCCCTGTGCCCCAAA	NA	False	NA	NA	False	NA	NA	NA	62176034	62185630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_62176192_62185265
transcript_74586.known	chr5	+	2148	3	FSM	ENSMUSG00000019518.12	ENSMUST00000157031.2	2148	3	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_2	1.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAAAATAAAAATAAC	8122	False	NA	NA	False	NA	NA	NA	138170308	138172634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_138170511_138170610_138171156_138171233
transcript_7459.known	chr10	+	1218	2	FSM	ENSMUSG00000085347.2	ENSMUST00000143122.2	1218	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTCTGTCCTTCTGATTC	NA	False	NA	NA	False	NA	NA	NA	62176385	62186306	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_62176563_62185265
transcript_74597.known	chr5	+	1098	10	FSM	ENSMUSG00000019494.15	ENSMUST00000110951.8	1098	10	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	1439.16262518466	10282	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCAGCCCTTCCAGTGGC	NA	False	NA	11	True	AATAAA	-12	NA	138159361	138162240	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_138159453_138159636_138159760_138159935_138160068_138160398_138160488_138160583_138160647_138160996_138161045_138161391_138161507_138161588_138161682_138161770_138161872_138161997
transcript_74598.known	chr5	-	2962	15	FSM	ENSMUSG00000029730.17	ENSMUST00000000505.16	2962	15	0	0	0	0	multi-exon	FALSE	canonical	3	1644	junction_12	192.903605514278	4980	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTAGAGTTTTTAGTATG	1716	False	NA	-8	True	AATAAA	-32	NA	138170684	138162844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
transcript_74599.known	chr5	-	357	3	FSM	ENSMUSG00000036980.14	ENSMUST00000139276.2	357	3	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_2	308	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTCATGCACATGGGGAA	1963	False	NA	NA	False	NA	NA	NA	138185477	138182178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_138182188_138182593_138182810_138185345
transcript_74600.known	chr5	-	968	7	FSM	ENSMUSG00000036980.14	ENSMUST00000123415.8	968	7	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_6	251.169708010783	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTCTGTGGAGCAGCAG	1952	False	NA	NA	False	NA	NA	NA	138185488	138180936	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185223
transcript_74602.known	chr5	+	1855	6	FSM	ENSMUSG00000036968.16	ENSMUST00000110934.9	1855	6	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_5	26.1350339582714	180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTAAGTGTAATACATAATA	5598	False	NA	NA	False	AAAACA	-12	NA	138185746	138192180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_138185983_138188531_138188659_138188754_138188852_138190099_138190223_138190822_138190941_138191026
transcript_74605.known	chr5	+	1308	1	FSM	ENSMUSG00000049285.5	ENSMUST00000057773.5	1308	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	236	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTCCTGATGTAAATGC	5031	False	NA	NA	False	AATAAA	-17	NA	138192575	138193883	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_138192600_138193900
transcript_74608.known	chr5	+	980	3	FSM	ENSMUSG00000050552.9	ENSMUST00000160157.2	980	3	0	0	0	0	multi-exon	FALSE	canonical	3	386	junction_1	14	978	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGCACAGAATGGTTTG	NA	False	NA	38	True	AATAAA	-30	NA	138254092	138257660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_138254596_138256916_138257035_138257301
transcript_7461.known	chr10	-	3517	18	FSM	ENSMUSG00000020080.9	ENSMUST00000020277.9	3517	18	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_6	3.69231878270005	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGAGGTATTAAGCTTTC	NA	False	NA	NA	False	AATAAA	-22	NA	62258270	62218915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_62219702_62221456_62221691_62227089_62227246_62229465_62229650_62230933_62231034_62231176_62231273_62234363_62234484_62234568_62234709_62235970_62236276_62237502_62237737_62239270_62239427_62241203_62241388_62244393_62244494_62245568_62245665_62247285_62247406_62247484_62247634_62253553_62253717_62258076
transcript_74612.known	chr5	-	2586	10	FSM	ENSMUSG00000029510.16	ENSMUST00000161827.8	2586	10	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	3.67507453523138	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTCTCTGTGTGTGTA	1721	False	NA	0	True	AATAAA	-20	NA	138278267	138271916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_138272832_138273716_138273887_138273968_138274109_138274190_138274338_138274469_138274601_138274845_138275009_138275668_138275750_138276476_138276800_138277100_138277260_138277910
transcript_74613.known	chr5	+	743	3	FSM	ENSMUSG00000085227.2	ENSMUST00000124298.2	743	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	4	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGGACACAAGTTTATATT	6175	False	NA	NA	False	NA	NA	NA	138262304	138264923	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_138262364_138264018_138264268_138264488
transcript_74617.known	chr5	+	624	2	FSM	ENSMUSG00000085227.2	ENSMUST00000141454.2	624	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTGACTGAGGAGAAAATG	6186	False	NA	NA	False	AAGAAA	-15	NA	138262315	138264594	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_138262364_138264018
transcript_74618.known	chr5	+	519	2	FSM	ENSMUSG00000085227.2	ENSMUST00000144460.2	519	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCAGAGCGGGCTAGAGC	11	False	NA	NA	False	NA	NA	NA	138262369	138264491	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_138262416_138264018
transcript_7462.nic	chr10	-	1067	2	ISM	ENSMUSG00000020080.9	ENSMUST00000020277.9	3517	18	36533	0	14403	0	3prime_fragment	FALSE	canonical	3	16	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGAGGTATTAAGCTTTC	9513	False	NA	NA	False	AATAAA	-22	NA	62221737	62218915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_62219702_62221456
transcript_74620.known	chr5	+	1267	2	FSM	ENSMUSG00000085227.2	ENSMUST00000125662.2	1267	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGGACACAAGTTTATATT	6201	False	NA	NA	False	NA	NA	NA	138262330	138264923	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_138262364_138263689
transcript_74621.known	chr5	-	1901	4	FSM	ENSMUSG00000075593.11	ENSMUST00000161647.8	1901	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTATTAGACTTATTTTAT	8886	False	NA	NA	False	AATAAA	-31	NA	138271102	138263182	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_138264569_138269029_138269334_138269540_138269643_138270993
transcript_74622.known	chr5	+	4211	34	FSM	ENSMUSG00000036928.15	ENSMUST00000048028.15	4211	34	0	0	0	0	multi-exon	FALSE	canonical	2	72	junction_1	21.1857845161499	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATGACTTGAGATTGTCA	NA	False	NA	20	True	AATAAA	-20	NA	138278787	138310655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_138278917_138280126_138280301_138280880_138280978_138281294_138281415_138287457_138287555_138288452_138288530_138288970_138289176_138289591_138289744_138294095_138294170_138294963_138295088_138295588_138295688_138295884_138295965_138296227_138296336_138296540_138296656_138296778_138296885_138297069_138297174_138297392_138297486_138297600_138297691_138297914_138298116_138298215_138298287_138298385_138298474_138299043_138299122_138299203_138299297_138299418_138299588_138299695_138299833_138300785_138300888_138302303_138302453_138302635_138302765_138302846_138303005_138306730_138306918_138307088_138307191_138307460_138307534_138309995_138310068_138310297
transcript_74625.known	chr5	+	4669	33	FSM	ENSMUSG00000036928.15	ENSMUST00000161113.8	4669	33	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_6	40.72035683706	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATGACTTGAGATTGTCA	NA	False	NA	20	True	AATAAA	-20	NA	138278770	138310655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_138278917_138280126_138280301_138280880_138280978_138281294_138281415_138287457_138287555_138288452_138288530_138288627_138288733_138288970_138289744_138294095_138294170_138294963_138295088_138295588_138295688_138296227_138296336_138296540_138296656_138296778_138296885_138297069_138297174_138297392_138297486_138297600_138297691_138297914_138298116_138298215_138298287_138298385_138298474_138299043_138299122_138299203_138299297_138299418_138299588_138299695_138299833_138300785_138300888_138302303_138302453_138302635_138302765_138302846_138303005_138306730_138306918_138307088_138307191_138307460_138307534_138309995_138310068_138310297
transcript_74626.known	chr5	+	4123	34	FSM	ENSMUSG00000036928.15	ENSMUST00000162245.8	4123	34	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	28.1737362148663	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATGACTTGAGATTGTCA	NA	False	NA	20	True	AATAAA	-20	NA	138278805	138310655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_138278847_138280126_138280301_138280880_138280978_138281294_138281415_138287457_138287555_138288452_138288530_138288970_138289176_138289591_138289744_138294095_138294170_138294963_138295088_138295588_138295688_138295884_138295965_138296227_138296336_138296540_138296656_138296778_138296885_138297069_138297174_138297392_138297486_138297600_138297691_138297914_138298116_138298215_138298287_138298385_138298474_138299043_138299122_138299203_138299297_138299418_138299588_138299695_138299833_138300785_138300888_138302303_138302453_138302635_138302765_138302846_138303005_138306730_138306918_138307088_138307191_138307460_138307534_138309995_138310068_138310297
transcript_74627.known	chr5	+	869	5	FSM	ENSMUSG00000036898.17	ENSMUST00000100524.3	869	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	23.7276210354093	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGAGAAGCCTTATGTGTG	NA	False	NA	NA	False	NA	NA	NA	138439801	138454589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_138439892_138443013_138443141_138445776_138445870_138453241_138453352_138454140
transcript_74629.known	chr5	+	5312	5	FSM	ENSMUSG00000036898.17	ENSMUST00000085856.12	5312	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	9.52299847737046	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTAACTCTTCACAGTTTG	NA	False	NA	NA	False	ATTAAA	-21	NA	138439729	138458956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_138439892_138443013_138443141_138445776_138445870_138453241_138453352_138454136
transcript_74631.known	chr5	+	932	3	FSM	ENSMUSG00000036898.17	ENSMUST00000151095.2	932	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	2	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGATGGAGTTTTATTTTAA	NA	False	NA	NA	False	NA	NA	NA	138439772	138446462	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_138439892_138443013_138443141_138445776
transcript_74632.nnic	chr5	-	862	7	NNC	ENSMUSG00000058291.15	novel	4749	6	NA	NA	-14	368	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	29.6910012555245	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAGTTGTATTCAGCAG	1717	False	NA	NA	False	AATAAA	-17	NA	138618037	138602877	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_138603025_138605961_138606084_138610085_138610176_138610300_138610428_138614731_138614828_138615316_138615430_138617870
transcript_74634.known	chr5	-	2254	6	FSM	ENSMUSG00000058291.15	ENSMUST00000063262.11	2254	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	25.9584283037321	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCTTGATCTTTGTTTG	1752	False	NA	-9	True	AATAAA	-10	NA	138618002	138604381	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_138606084_138610085_138610176_138610300_138610428_138614731_138614822_138615316_138615430_138617870
transcript_74638.known	chr5	-	3318	5	FSM	ENSMUSG00000058291.15	ENSMUST00000085852.11	3318	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	27.3530162870569	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CATAAAAAAATTAATGAAAA	1734	False	NA	NA	False	NA	NA	NA	138618020	138603245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_138606084_138610085_138610176_138610300_138610428_138615316_138615430_138617870
transcript_74640.known	chr5	+	3038	4	FSM	ENSMUSG00000056014.16	ENSMUST00000069862.11	3038	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	4.92160768674447	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTATTGGACACTCTCCTT	1842	False	NA	49	True	AATAAA	-16	NA	138621155	138647098	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_138621251_138634425_138634553_138637756_138637850_138644375
transcript_74646.known	chr5	-	691	6	FSM	ENSMUSG00000025856.16	ENSMUST00000144934.8	691	6	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_5	159.651620724627	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTCATTGCCAATGTGCG	NA	False	NA	NA	False	NA	NA	NA	138980036	138962899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_138962983_138964900_138965028_138971944_138972133_138974103_138974209_138979042_138979140_138979945
transcript_74650.nnic	chr5	-	1146	6	NNC	ENSMUSG00000025856.16	novel	1363	8	NA	NA	366	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_5	158.480787479114	179	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAAAAAAAAAACAAAAAAAA	NA	False	NA	NA	False	AAAACA	-14	NA	138979670	138962725	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_138962983_138964900_138965028_138971944_138972133_138974103_138974209_138979042_138979140_138979298
transcript_74658.known	chr5	-	2060	6	FSM	ENSMUSG00000025856.16	ENSMUST00000076095.14	2060	6	0	0	0	0	multi-exon	FALSE	canonical	3	325	junction_5	43.6055042397173	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGGATGCATCCCGTGG	NA	False	NA	-19	True	ACTAAA	-32	NA	138980792	138961768	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_138962983_138964900_138965028_138971944_138972133_138974103_138974209_138979042_138979140_138980463
transcript_74659.known	chr5	-	2637	11	FSM	ENSMUSG00000025855.14	ENSMUST00000026973.14	2637	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	3.06757233003559	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGGAGCCTCTGTCTAAA	NA	False	NA	-2	True	ATTAAA	-26	NA	139115514	139003060	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_139004587_139005810_139005893_139022788_139022911_139028189_139028251_139036412_139036572_139048308_139048356_139049010_139049073_139092375_139092468_139094238_139094410_139113341_139113541_139115398
transcript_7466.known	chr10	-	2519	15	FSM	ENSMUSG00000020079.16	ENSMUST00000162023.2	2519	15	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_10	90.2367916729566	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTACTTATTATAGCCTT	NA	False	NA	49	True	AGTAAA	-16	NA	62285462	62265033	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_62265614_62266249_62266399_62268067_62268245_62268830_62268912_62270173_62270394_62271237_62271332_62271424_62271606_62273212_62273305_62274752_62274831_62276913_62277026_62279157_62279343_62280817_62280933_62282802_62282911_62283474_62283553_62285193
transcript_74661.known	chr5	+	4134	23	FSM	ENSMUSG00000036817.15	ENSMUST00000058716.14	4134	23	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_7	179.419817953258	413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTGTCTTATCTCTGCC	NA	False	NA	33	True	AATAAA	-19	NA	139186391	139235595	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139215507_139215700_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
transcript_74664.known	chr5	+	2608	22	FSM	ENSMUSG00000036817.15	ENSMUST00000078690.13	2608	22	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_6	196.102233969428	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTCTGTATATACCAAGAC	NA	False	NA	NA	False	NA	NA	NA	139186434	139234304	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
transcript_74668.known	chr5	+	3714	20	FSM	ENSMUSG00000036817.15	ENSMUST00000110883.9	3714	20	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_6	213.143404315789	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGCGATTTCAAGTGAT	NA	False	NA	-12	True	AATAAA	-21	NA	139186397	139235550	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
transcript_74672.nnic	chr5	+	930	7	NNC	ENSMUSG00000036817.15	novel	4134	23	NA	NA	0	10	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_6	366.601509362232	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTTCTAGCTGCCTTTG	NA	False	NA	NA	False	NA	NA	NA	139186391	139214105	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139213919
transcript_74674.known	chr5	+	2168	6	FSM	ENSMUSG00000036817.15	ENSMUST00000142473.8	2168	6	0	0	0	0	multi-exon	FALSE	canonical	3	597	junction_1	167.541039748475	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAAAAAATATTCTTCT	NA	False	NA	NA	False	NA	NA	NA	139186421	139214094	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460
transcript_74675.known	chr5	+	3955	22	FSM	ENSMUSG00000036817.15	ENSMUST00000110884.9	3955	22	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_8	208.642464528521	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGCGATTTCAAGTGAT	NA	False	NA	-12	True	AATAAA	-21	NA	139186414	139235550	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139215507_139215700_139216527_139216594_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
transcript_74676.known	chr5	+	2107	9	FSM	ENSMUSG00000025858.13	ENSMUST00000026976.12	2107	9	0	0	0	0	multi-exon	FALSE	canonical	3	1098	junction_8	59.685503893324	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCAGTAGTCCTTTCTG	NA	False	NA	NA	False	AATAAA	-15	NA	139238078	139255806	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_139238375_139248235_139248315_139248624_139248707_139249233_139249384_139251381_139251521_139252758_139252900_139252981_139253058_139253157_139253231_139254735
transcript_74677.known	chr5	+	1180	9	FSM	ENSMUSG00000025858.13	ENSMUST00000110878.2	1180	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	399.478546826985	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTGTCTCTGCTTCCTTG	NA	False	NA	NA	False	AATAAA	-31	NA	139239265	139255084	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_139239357_139248235_139248315_139248624_139248707_139249233_139249384_139251381_139251521_139252758_139252900_139252981_139253058_139253157_139253231_139254735
transcript_74687.known	chr5	-	2461	3	FSM	ENSMUSG00000045438.13	ENSMUST00000049630.13	2461	3	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_2	1.5	435	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGCGTTGAGTAGTGTT	NA	False	NA	NA	False	TATAAA	-19	NA	139330988	139321943	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_139324131_139328317_139328430_139330826
transcript_7469.known	chr10	+	1865	1	FSM	ENSMUSG00000097129.3	ENSMUST00000238598.2	1865	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTTGGCTCAGTGTGTTA	NA	False	NA	NA	False	NA	NA	NA	62285267	62287132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_62285300_62287100
transcript_74696.known	chr5	-	1429	5	FSM	ENSMUSG00000053553.12	ENSMUST00000066052.12	1429	5	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_4	25.951878544722	2237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGACTTTTTGCCTGTC	NA	False	NA	-6	True	NA	NA	NA	139446257	139345493	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_139346486_139347061_139347144_139349727_139349919_139441171_139441302_139446223
transcript_74697.known	chr5	-	2030	4	FSM	ENSMUSG00000053553.12	ENSMUST00000198474.2	2030	4	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_3	29.698484809835	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGACTTTTTGCCTGTC	NA	False	NA	-6	True	NA	NA	NA	139446282	139345493	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_139347144_139349727_139349919_139441171_139441302_139446223
transcript_74698.known	chr5	-	686	3	FSM	ENSMUSG00000053553.12	ENSMUST00000196267.2	686	3	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_2	36	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGGTGTTTTGTTTTTAAG	NA	False	NA	NA	False	NA	NA	NA	139446266	139349405	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_139349919_139441171_139441302_139446223
transcript_74699.known	chr5	+	4157	2	FSM	ENSMUSG00000044197.9	ENSMUST00000051293.8	4157	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTTTCCCTTTATGTTT	1355	False	NA	5	True	ATTAAA	-18	NA	139366335	139382170	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_139366499_139378176
transcript_74700.known	chr5	-	3169	7	FSM	ENSMUSG00000053581.14	ENSMUST00000079996.13	3169	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_6	14.7271480229163	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCTAGACAGTTTCTCTA	8677	False	NA	-6	True	AATAAA	-24	NA	139470304	139456965	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_139459310_139459484_139459551_139460607_139460760_139464221_139464354_139467720_139467816_139468456_139468553_139470020
transcript_74701.known	chr5	-	3121	7	FSM	ENSMUSG00000053581.14	ENSMUST00000110851.8	3121	7	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_6	12.5532200384337	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTATTCTAGACAGTTT	8709	False	NA	-11	True	AATAAA	-19	NA	139470272	139456970	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_139459310_139459484_139459551_139460607_139460760_139464221_139464354_139467720_139467816_139468456_139468553_139470031
transcript_74706.nic	chr5	-	1012	6	ISM	ENSMUSG00000029547.11	ENSMUST00000198615.2	1634	7	1125	-3	1125	0	3prime_fragment	TRUE	canonical	3	140	junction_5	55.8662688927764	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGGTGTCCTGTGTTGT	NA	False	NA	-9	True	AATGAA	-19	NA	139739488	139737036	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_139737389_139737464_139737575_139737692_139737785_139737975_139738047_139738466_139738581_139739215
transcript_74710.known	chr5	+	2849	3	FSM	ENSMUSG00000018143.11	ENSMUST00000018287.10	2849	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	1.5	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGTGTCTGGATGGTGC	NA	False	NA	16	True	AATAAA	-21	NA	139777267	139788408	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_139777468_139784893_139784974_139785839
transcript_74712.known	chr5	-	2401	1	FSM	ENSMUSG00000029551.14	ENSMUST00000182743.2	2401	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAAAAAAAAAAAAAAAGGA	7323	False	NA	NA	False	NA	NA	NA	139812630	139810229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_139810200_139812600
transcript_74713.known	chr5	-	883	3	FSM	ENSMUSG00000029551.14	ENSMUST00000031531.14	883	3	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_2	27	1483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGAGACATCATGGGCAT	7313	False	NA	-12	True	AATAAA	-31	NA	139812640	139809346	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_139809829_139811882_139812120_139812476
transcript_74714.known	chr5	-	733	3	FSM	ENSMUSG00000029551.14	ENSMUST00000182602.2	733	3	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_2	75.5	845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTGGCCTTCTCAGTG	7355	False	NA	-33	True	AATAAA	-10	NA	139812598	139809367	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_139809829_139811882_139812120_139812563
transcript_74718.nnic	chr5	-	1008	3	NNC	ENSMUSG00000029554.16	novel	1603	7	NA	NA	46862	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	95	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGATTGTGTCCAAGGCTC	NA	False	NA	-4	True	AATAAA	-22	NA	140054359	139994448	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_139995030_140051568_140051760_140054123
transcript_74720.nnic	chr5	-	893	3	NNC	ENSMUSG00000029554.16	novel	1603	7	NA	NA	46796	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	94.5	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGATTGTGTCCAAGGCTC	NA	False	NA	-4	True	AATAAA	-22	NA	140054425	139994448	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_139995030_140051568_140051760_140054304
transcript_74722.known	chr5	-	2640	18	FSM	ENSMUSG00000029554.16	ENSMUST00000031534.9	2640	18	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_17	17.902078903461	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTCCAAGGCTCCAAGC	NA	False	NA	1	True	AATAAA	-27	NA	140307307	139994443	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_139995030_140051568_140051760_140074384_140074593_140091269_140091361_140102991_140103081_140118523_140118581_140129674_140129816_140179668_140179814_140247252_140247340_140281541_140281604_140285969_140286085_140286188_140286320_140288669_140288752_140289327_140289453_140293345_140293526_140296349_140296491_140300744_140300908_140307261
transcript_74728.known	chr5	+	954	5	FSM	ENSMUSG00000036639.13	ENSMUST00000050205.12	954	5	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	49.2461927462418	1752	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTGTGTGACTACAGCG	NA	False	NA	10	True	NA	NA	NA	140317663	140323892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_140317711_140318177_140318229_140320209_140320375_140321067_140321214_140323347
transcript_74736.known	chr5	+	744	5	FSM	ENSMUSG00000036639.13	ENSMUST00000110827.8	744	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	84.8071341338687	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGTTGTGGCACCTTTAA	NA	False	NA	53	True	NA	NA	NA	140317708	140323696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_140317742_140318177_140318229_140320209_140320375_140321067_140321214_140323347
transcript_74741.known	chr5	+	479	4	FSM	ENSMUSG00000036639.13	ENSMUST00000198660.5	479	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	99.6806010326093	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCGACCTGTGGCCGGATG	NA	False	NA	NA	False	NA	NA	NA	140307410	140323387	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_140307539_140320209_140320375_140321067_140321214_140323347
transcript_74743.known	chr5	+	952	4	FSM	ENSMUSG00000036639.13	ENSMUST00000071881.10	952	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	90.7450641449256	845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTGTGTGACTACAGCG	NA	False	NA	10	True	NA	NA	NA	140317614	140323892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_140317711_140320209_140320375_140321067_140321214_140323347
transcript_74747.known	chr5	-	1443	3	FSM	ENSMUSG00000029557.8	ENSMUST00000031536.8	1443	3	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_2	12	468	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTTACTTGTCTGTTT	3901	False	NA	-5	True	AAAACA	-37	NA	140317653	140313428	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_140314536_140316734_140317025_140317607
transcript_74748.known	chr5	+	599	3	FSM	ENSMUSG00000036639.13	ENSMUST00000110825.2	599	3	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_1	33.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAAGAGGGCGTCAGATC	NA	False	NA	NA	False	NA	NA	NA	140318178	140321451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_140318229_140320209_140320375_140321067
transcript_74749.known	chr5	-	2627	11	FSM	ENSMUSG00000029560.13	ENSMUST00000031539.12	2627	11	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_10	18.7160359050735	205	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATGGTTTCCACGCTGCA	7720	False	NA	-12	True	AATAAA	-14	NA	140375017	140326057	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_140327398_140330040_140330191_140330463_140330611_140332031_140332101_140337887_140338021_140338789_140338951_140339187_140339269_140341714_140341837_140343811_140343930_140345946_140346138_140374902
transcript_74750.known	chr5	+	2945	19	FSM	ENSMUSG00000056076.14	ENSMUST00000100507.8	2945	19	0	0	0	0	multi-exon	TRUE	canonical	3	2428	junction_3	310.145868707844	331	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGCTGTCCTGATCTCTT	NA	False	NA	15	True	AATAAA	-16	NA	140405082	140429115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_140405582_140411016_140411210_140412191_140412312_140412537_140412596_140412771_140412901_140413164_140413323_140415806_140415939_140416016_140416084_140416725_140416773_140418678_140418890_140422002_140422076_140423039_140423163_140424070_140424150_140425667_140425807_140426740_140426867_140427491_140427570_140427878_140427988_140428074_140428192_140428628
transcript_74752.known	chr5	+	2331	2	FSM	ENSMUSG00000036599.11	ENSMUST00000043050.9	2331	2	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	0	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATATTTATATGTACG	NA	False	NA	NA	False	TTTAAA	-31	NA	140491304	140511479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_140491452_140509295
transcript_74753.known	chr5	+	766	2	FSM	ENSMUSG00000036599.11	ENSMUST00000124142.2	766	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGCACCAACTGGAAGCG	NA	False	NA	NA	False	NA	NA	NA	140491329	140509908	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_140491483_140509295
transcript_74754.known	chr5	-	613	5	FSM	ENSMUSG00000036586.7	ENSMUST00000042993.7	613	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.11803398874989	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGGCTGCTGTGGAGGTG	NA	False	NA	NA	False	AATAAA	-18	NA	140550826	140548873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_140549050_140549295_140549463_140550187_140550348_140550420_140550501_140550796
transcript_74758.known	chr5	-	2983	10	FSM	ENSMUSG00000036555.15	ENSMUST00000149674.8	2983	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_6	8.3813431847316	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAATGGAG	4513	False	NA	NA	False	NA	NA	NA	140688031	140669564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_140671850_140672082_140672156_140673539_140673611_140675567_140675619_140675710_140675825_140677354_140677426_140679169_140679299_140682762_140682809_140685439_140685488_140687936
transcript_74759.known	chr5	-	386	5	FSM	ENSMUSG00000036555.15	ENSMUST00000135028.5	386	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	13.7363568678162	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACCCACCCCCCCAGCTGC	4489	False	NA	NA	False	NA	NA	NA	140688055	140678635	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_140678680_140679169_140679299_140682762_140682809_140685439_140685488_140687936
transcript_74760.known	chr5	+	3333	14	FSM	ENSMUSG00000000148.18	ENSMUST00000041588.13	3333	14	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	10.6471097836719	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGTCTTCTCTTTGAGG	NA	False	NA	NA	False	NA	NA	NA	140690765	140705134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_140690831_140691707_140691852_140695892_140696048_140697260_140697409_140698259_140698633_140698807_140698928_140700047_140700140_140700321_140700441_140700514_140700702_140700893_140700968_140702446_140702550_140702683_140702783_140702898_140703075_140703656
transcript_74763.known	chr5	-	1299	6	FSM	ENSMUSG00000036526.9	ENSMUST00000196169.2	1299	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	3.77359245282264	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGGTTCTTATCCCACAG	NA	False	NA	NA	False	ATTAAA	-21	NA	140867960	140858746	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_140859285_140860095_140860212_140862151_140862277_140863717_140863898_140866052_140866189_140867756
transcript_74769.known	chr5	+	3689	17	FSM	ENSMUSG00000039623.14	ENSMUST00000038699.13	3689	17	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_8	14.9769353924626	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGAGGGCGCGGTGTCTT	8700	False	NA	4	True	AATAAA	-14	NA	142449808	142464465	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_142449891_142452012_142452148_142452244_142452432_142453396_142453542_142453775_142453886_142454618_142454788_142455761_142455903_142456044_142456083_142456148_142456312_142457957_142458140_142459662_142459806_142460128_142460270_142460629_142460742_142461457_142461556_142462448_142462582_142462651_142462867_142462970
transcript_74776.known	chr5	+	5171	12	FSM	ENSMUSG00000029578.16	ENSMUST00000036872.16	5171	12	0	0	0	0	multi-exon	FALSE	canonical	3	377	junction_9	31.2155926283724	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAAGGGGACTGTCCTGA	NA	False	NA	NA	False	ATTAAA	-15	NA	142615296	142656343	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_142615588_142623956_142624040_142641602_142641773_142643946_142644044_142644819_142644918_142645287_142645381_142646779_142646851_142648789_142648898_142650079_142650245_142651177_142651286_142651848_142652007_142652614
transcript_7478.known	chr10	-	2597	9	FSM	ENSMUSG00000020078.17	ENSMUST00000105447.11	2597	9	0	0	0	0	multi-exon	FALSE	canonical	3	953	junction_7	50.5010829091813	1196	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACTTAAGTTTGTAGTT	5198	False	NA	-11	True	AATAAA	-12	NA	62322584	62291055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62306838_62306915_62316336_62316487_62322436
transcript_74781.known	chr5	-	2831	5	FSM	ENSMUSG00000066640.12	ENSMUST00000035985.8	2831	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	6.28490254498827	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATGTCTCCAGGATGTT	NA	False	NA	-2	True	NA	NA	NA	142880993	142857543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_142858276_142864412_142864632_142871293_142872838_142874423_142874631_142880864
transcript_7480.nnic	chr10	-	1367	4	NNC	ENSMUSG00000020077.15	novel	1727	4	NA	NA	-6288	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_3	4.10960933531265	58	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGTGGCTATGTGACATGG	NA	False	NA	-2	True	AATAAA	-21	NA	62350164	62330206	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_62330886_62333557_62333703_62343420_62343616_62349816
transcript_7481.nnic	chr10	-	1194	4	NNC	ENSMUSG00000020077.15	novel	1727	4	NA	NA	-6288	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_3	7.25718035235908	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGTGGCTATGTGACATGG	NA	False	NA	-2	True	AATAAA	-21	NA	62350164	62330206	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_62330886_62333557_62333703_62343420_62343616_62349989
transcript_74813.known	chr5	-	1920	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	0	0	0	0	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	26019	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTCTGTGGCTTT	8889	False	NA	-1	True	AATAAA	-27	NA	142892509	142888869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
transcript_74814.known	chr5	-	1242	5	FSM	ENSMUSG00000029580.15	ENSMUST00000167721.8	1242	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1798.88215289385	793	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTGTCTTTTTTTAATA	8941	False	NA	6	True	NA	NA	NA	142892457	142889255	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142891318_142891448_142892406
transcript_74818.known	chr5	+	2675	5	FSM	ENSMUSG00000029581.15	ENSMUST00000031565.15	2675	5	0	0	0	0	multi-exon	FALSE	canonical	3	2634	junction_2	132.012310032057	658	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGTGTGTGTCTCAGGGG	NA	False	NA	18	True	AATAAA	-18	NA	142946097	142958940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_142947036_142955659_142955817_142955921_142956044_142956272_142956441_142957650
transcript_74819.known	chr5	-	4474	17	FSM	ENSMUSG00000045078.13	ENSMUST00000053498.13	4474	17	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_14	28.015550927119	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGCTCTGTTTGTCCC	6130	False	NA	-1	True	AATAAA	-16	NA	143098749	142976647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_142978721_142979256_142979327_143001378_143001602_143013700_143013799_143054071_143054151_143054600_143054750_143061481_143061620_143063181_143063233_143065978_143066119_143066717_143066833_143071625_143071791_143073273_143073377_143075497_143075575_143075874_143076514_143078749_143078881_143084133_143084261_143098653
transcript_7482.known	chr10	-	1727	4	FSM	ENSMUSG00000020077.15	ENSMUST00000160987.8	1727	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	6.34209919681348	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAATATGATATAAAATGT	NA	False	NA	NA	False	NA	NA	NA	62363230	62329611	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_62330886_62333557_62333703_62343420_62343616_62363117
transcript_74820.known	chr5	-	3704	17	FSM	ENSMUSG00000045078.13	ENSMUST00000200607.5	3704	17	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_14	28.9242005075335	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCAGGCTTTTGTCCTCC	6144	False	NA	NA	False	NA	NA	NA	143098735	142977574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_142978721_142979256_142979327_143001378_143001602_143013700_143013799_143054071_143054151_143054600_143054750_143061481_143061620_143063181_143063233_143065978_143066119_143066717_143066833_143071625_143071791_143073273_143073377_143075497_143075575_143075874_143076685_143078749_143078881_143084133_143084261_143098653
transcript_74827.nic	chr5	-	2099	7	ISM	ENSMUSG00000045078.13	ENSMUST00000200607.5	3704	17	-56	93503	-42	-4305	5prime_fragment	FALSE	canonical	3	116	junction_4	37.2860563750043	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACTGTGTGAGATTTGAT	6088	False	NA	NA	False	AATAAA	-23	NA	143098791	143071077	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_143071791_143073273_143073377_143075497_143075575_143075874_143076685_143078749_143078881_143084133_143084261_143098653
transcript_74830.known	chr5	-	520	3	FSM	ENSMUSG00000104529.5	ENSMUST00000198334.2	520	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	7.5	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTCGCCTCCTATTC	3477	False	NA	0	True	AATAAA	-19	NA	143151506	143150533	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_143150848_143151184_143151305_143151420
transcript_74831.nnic	chr5	-	718	3	NNC	ENSMUSG00000104529.5	novel	520	3	NA	NA	-122	-3	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	8	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTGTGTGTCGCCTCCTA	3355	False	NA	-3	True	AATAAA	-16	NA	143151628	143150536	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_143150848_143151105_143151305_143151420
transcript_74834.known	chr5	-	588	2	FSM	ENSMUSG00000104529.5	ENSMUST00000200314.5	588	2	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	0	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTCGCCTCCTATTC	3525	False	NA	0	True	AATAAA	-19	NA	143151458	143150533	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_143150848_143151184
transcript_74835.known	chr5	-	3335	5	FSM	ENSMUSG00000061898.11	ENSMUST00000049861.11	3335	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	6.20483682299543	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTGTTTATGTGTTGTGT	NA	False	NA	NA	False	GATAAA	-3	NA	143166485	143157940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_143160814_143161790_143161887_143162219_143162347_143165240_143165298_143166303
transcript_74837.nic	chr5	-	1436	3	ISM	ENSMUSG00000039296.16	ENSMUST00000085733.9	1819	7	6481	0	6481	0	3prime_fragment	FALSE	canonical	2	3	junction_1	2.5	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGATGGCTTTGTTTTCT	NA	False	NA	NA	False	AATAAA	-34	NA	143205156	143202070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_-_143202965_143204425_143204529_143204717
transcript_74839.nnic	chr5	-	1134	3	NNC	ENSMUSG00000039296.16	novel	1819	7	NA	NA	6486	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	1	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGATGGCTTTGTTTTCT	NA	False	NA	NA	False	AATAAA	-34	NA	143205151	143202070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_143202965_143204425_143204529_143205014
transcript_74840.known	chr5	-	2208	6	FSM	ENSMUSG00000039244.11	ENSMUST00000046418.3	2208	6	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_3	6.98569967862919	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCATTGTGGGGTTTTCA	NA	False	NA	-5	True	AATAAA	-19	NA	143301115	143286961	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_143287759_143292520_143292561_143293370_143293896_143297465_143297632_143299932_143300155_143300657
transcript_74849.nic	chr5	-	1586	9	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_8	94.7198995723707	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTTTTCTCATCATTG	5267	False	NA	-13	True	AATACA	-26	NA	143315013	143302243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314432_143314653_143314920
transcript_7485.known	chr10	-	938	3	FSM	ENSMUSG00000020077.15	ENSMUST00000020271.13	938	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	2	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGTGGCTATGTGACATGG	NA	False	NA	-2	True	AATAAA	-21	NA	62343534	62330206	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_62330886_62333557_62333703_62343420
transcript_74855.nic	chr5	-	1415	8	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	-11	0	combination_of_known_junctions	TRUE	canonical	3	22	junction_7	84.1580146425249	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTTTTCTCATCATTG	5285	False	NA	-13	True	AATACA	-26	NA	143314995	143302243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314853
transcript_7486.known	chr10	-	4722	15	FSM	ENSMUSG00000020075.9	ENSMUST00000045866.9	4722	15	0	0	0	0	multi-exon	FALSE	canonical	3	474	junction_14	69.0087246776279	2219	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTAGTTCTTGGTGGCTTTT	NA	False	NA	-5	True	AATAAA	-18	NA	62438060	62416029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_62418387_62418832_62418878_62420409_62420545_62421303_62421464_62423242_62423317_62423782_62423903_62424435_62424598_62425556_62425707_62426399_62426546_62427595_62427782_62428788_62428907_62429740_62429920_62430814_62430891_62434010_62434671_62437906
transcript_74864.known	chr5	+	600	3	FSM	ENSMUSG00000089889.3	ENSMUST00000162890.2	600	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTCGAAGGCCTTTAAT	NA	False	NA	NA	False	AATAAA	-18	NA	143315081	143318456	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_143315109_143316458_143316641_143318065
transcript_74867.known	chr5	+	501	2	FSM	ENSMUSG00000089889.3	ENSMUST00000160231.2	501	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCGAAGGCCTTTAATCCC	NA	False	NA	NA	False	AATAAA	-21	NA	143315001	143318459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_143315109_143318065
transcript_74868.known	chr5	-	1341	8	FSM	ENSMUSG00000001844.11	ENSMUST00000159813.8	1341	8	0	0	0	0	multi-exon	TRUE	canonical	3	40	junction_2	78.3753397284568	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGTTTTCTCATCATT	5305	False	NA	-14	True	AATACA	-25	NA	143314975	143302244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_143302588_143305985_143306231_143307509_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314920
transcript_74869.known	chr5	-	912	7	FSM	ENSMUSG00000001844.11	ENSMUST00000162287.8	912	7	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	85.5446602009084	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCTGACGCTGACGGCTT	5314	False	NA	NA	False	NA	NA	NA	143314966	143306136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_143306231_143307523_143307650_143309886_143310154_143310639_143310714_143311853_143311979_143314145_143314326_143314920
transcript_74870.known	chr5	-	801	2	FSM	ENSMUSG00000001844.11	ENSMUST00000161199.2	801	2	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAATGTCAGTGTTCCCAG	5323	False	NA	NA	False	NA	NA	NA	143314957	143314049	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_143314326_143314432
transcript_74871.known	chr5	-	848	7	FSM	ENSMUSG00000001844.11	ENSMUST00000159941.8	848	7	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_6	85.0106202515636	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTTGGGTGAACAACTGC	5302	False	NA	NA	False	NA	NA	NA	143314978	143306191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314853
transcript_74874.nnic	chr5	-	652	2	NNC	ENSMUSG00000045345.8	novel	2631	2	NA	NA	-4217	-4715	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCATTAGTATTATTACAT	NA	False	NA	NA	False	AATAAA	-30	NA	143389535	143384158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_143384639_143389363
transcript_74876.known	chr5	+	1829	5	FSM	ENSMUSG00000079111.4	ENSMUST00000110731.4	1829	5	0	0	0	0	multi-exon	FALSE	canonical	3	606	junction_2	10.3531396204243	1183	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTATGGTCTTTTCTAT	NA	False	NA	NA	False	AATAAA	-15	NA	143389592	143407656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_143389808_143398245_143398347_143403804_143403964_143405194_143405448_143406555
transcript_74881.known	chr5	+	4651	15	FSM	ENSMUSG00000039206.14	ENSMUST00000045593.12	4651	15	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	5.5272977491866	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAACAAAAAATCTC	NA	False	NA	NA	False	AGTAAA	-38	NA	143450338	143491697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_143450532_143452707_143452860_143458701_143458874_143460367_143460627_143464168_143464292_143467384_143467513_143469980_143470108_143472902_143472987_143475681_143475760_143479912_143479994_143480296_143480425_143486724_143486794_143486879_143486953_143488616_143488865_143488961
transcript_74882.known	chr5	-	4159	6	FSM	ENSMUSG00000001847.15	ENSMUST00000080537.14	4159	6	0	0	0	0	multi-exon	FALSE	canonical	3	1143	junction_4	56.2444663944819	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	3423	False	NA	NA	False	NA	NA	NA	143513791	143489388	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_143492861_143493081_143493242_143493850_143493914_143500423_143500542_143502912_143502985_143513517
transcript_74883.nic	chr5	+	1277	4	ISM	ENSMUSG00000039206.14	ENSMUST00000045593.12	4651	15	-22	30592	-22	8	5prime_fragment	FALSE	canonical	3	18	junction_3	7.34846922834953	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGCCTTGTTTTTTTT	NA	False	NA	NA	False	CATAAA	-21	NA	143450316	143461105	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_143450532_143452707_143452860_143458701_143458874_143460367
transcript_74884.known	chr5	-	2325	7	FSM	ENSMUSG00000001847.15	ENSMUST00000100489.4	2325	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	572.095174677159	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAACTGGTTATGCTTGTGT	3466	False	NA	-9	True	AATAAA	-13	NA	143513748	143491236	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_143492861_143493081_143493242_143493850_143493914_143495351_143495409_143500423_143500542_143502912_143502985_143513517
transcript_74885.known	chr5	+	919	2	FSM	ENSMUSG00000118332.2	ENSMUST00000118121.2	919	2	0	0	0	0	multi-exon	TRUE	canonical	3	93	junction_1	0	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCGGTGTTTTCCTAATG	NA	False	NA	9	True	AATAAA	-14	NA	143534500	143537693	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_143534890_143537163
transcript_74886.known	chr5	+	2202	2	FSM	ENSMUSG00000118332.2	ENSMUST00000119488.2	2202	2	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTATGTTCTCCTTATCTTT	NA	False	NA	32	True	AATAAA	-45	NA	143534462	143550286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_143534890_143548511
transcript_74887.known	chr5	+	3738	13	FSM	ENSMUSG00000018001.19	ENSMUST00000116456.10	3738	13	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_12	7.06468132488807	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCCTAAGACTCAATTCTT	NA	False	NA	5	True	AATAAA	-22	NA	143608201	143696005	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_143608429_143670150_143670234_143672227_143672293_143672732_143672800_143678302_143678422_143683470_143683552_143687073_143687187_143687351_143687501_143688568_143688681_143692838_143692916_143692993_143693066_143693149_143693305_143693587
transcript_74888.known	chr5	+	4325	15	FSM	ENSMUSG00000029613.16	ENSMUST00000100487.6	4325	15	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_1	19.8185647866863	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGACACTGTTGGTGTT	NA	False	NA	NA	False	AATAAA	-31	NA	143803542	143841069	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_143803764_143808680_143808840_143810568_143810703_143812477_143812516_143814393_143814494_143816252_143816334_143818970_143819071_143820790_143820849_143821473_143821799_143823667_143823780_143826213_143826315_143833982_143834095_143834292_143834376_143835831_143836066_143838602
transcript_7489.nic	chr10	-	2727	16	NIC	ENSMUSG00000020076.8	novel	2375	16	NA	NA	-82	0	combination_of_known_junctions	FALSE	canonical	3	67	junction_15	70.2071854505569	1632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTAAGAGTTTTCT	8024	False	NA	-11	True	ATTAAA	-28	NA	62487079	62451793	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_-_62452296_62455363_62455409_62457167_62457303_62460546_62460707_62460923_62460998_62461941_62462062_62463299_62463462_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62476642_62478554_62478734_62479075_62479152_62482692_62482981_62483312_62483423_62486803
transcript_74894.known	chr5	-	1073	4	FSM	ENSMUSG00000029610.14	ENSMUST00000100483.3	1073	4	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_3	226.993881464286	1103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTTTATTTTATTTTAA	NA	False	NA	-18	True	AATAAA	-16	NA	143846665	143839521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_143840009_143841382_143841615_143843366_143843574_143846518
transcript_74895.known	chr5	+	736	3	FSM	ENSMUSG00000029613.16	ENSMUST00000154767.2	736	3	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_1	11.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAAGAAATAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	143803701	143811083	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_143803764_143808680_143808840_143810568
transcript_74898.known	chr5	-	1185	4	FSM	ENSMUSG00000029610.14	ENSMUST00000031613.11	1185	4	0	0	0	0	multi-exon	FALSE	canonical	3	560	junction_3	88.5023540176569	1863	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTTTATTTTATTTTAA	NA	False	NA	-18	True	AATAAA	-16	NA	143846657	143839521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_143840009_143841382_143841615_143843366_143843574_143846398
transcript_74899.known	chr5	+	1654	6	FSM	ENSMUSG00000029613.16	ENSMUST00000140013.8	1654	6	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_1	17.6249822694946	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGATA	NA	False	NA	NA	False	NA	NA	NA	143803585	143817297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_143803764_143808680_143808840_143810568_143810703_143812477_143812516_143814393_143814494_143816252
transcript_74900.known	chr5	+	2116	15	FSM	ENSMUSG00000079109.12	ENSMUST00000110710.10	2116	15	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_11	35.0155213397413	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGAAGGTTTTAAGTAAT	NA	False	NA	NA	False	NA	NA	NA	143846807	143868023	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_143846898_143848743_143848879_143850219_143850307_143850436_143850540_143851437_143851622_143853173_143853342_143854397_143854496_143856326_143856427_143858833_143858919_143860294_143860451_143862038_143862320_143864916_143865085_143865759_143865861_143865998_143866169_143867833
transcript_74901.known	chr5	+	5477	15	FSM	ENSMUSG00000079109.12	ENSMUST00000170083.8	5477	15	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_1	27.3439916170083	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGCTTATTTATTTTT	NA	False	NA	NA	False	NA	NA	NA	143846781	143870786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_143846898_143848743_143848879_143850219_143850307_143850436_143850540_143851437_143851622_143853173_143853342_143854397_143854496_143856326_143856427_143858833_143858919_143860294_143860451_143862038_143862892_143864916_143865085_143865759_143865861_143865998_143866169_143867833
transcript_74912.known	chr5	+	955	4	FSM	ENSMUSG00000079109.12	ENSMUST00000154781.8	955	4	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	13.490737563232	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAACAAAGCA	NA	False	NA	NA	False	AATGAA	-5	NA	143846842	143851109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_143846898_143848738_143848879_143850219_143850307_143850436
transcript_74918.known	chr5	+	341	3	FSM	ENSMUSG00000075569.11	ENSMUST00000164604.2	341	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCCCAGCCTCTCAGCCTC	7959	False	NA	NA	False	NA	NA	NA	143917969	143922346	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_143918034_143920721_143920921_143922268
transcript_7492.known	chr10	-	2535	15	FSM	ENSMUSG00000020076.8	ENSMUST00000020270.6	2535	15	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_9	23.4748019486984	1721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTAAGAGTTTTCT	8106	False	NA	-11	True	ATTAAA	-28	NA	62486997	62451793	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_62452296_62455363_62455409_62457167_62457303_62460546_62460707_62460923_62460998_62461941_62462062_62463299_62463462_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62476642_62478554_62478734_62479075_62479152_62482692_62482981_62486803
transcript_74920.known	chr5	-	1769	15	FSM	ENSMUSG00000029617.11	ENSMUST00000031621.11	1769	15	0	0	0	0	multi-exon	FALSE	canonical	3	726	junction_9	71.895615943093	970	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTTCCTGTTGAGTCCT	NA	False	NA	1	True	AATAAA	-22	NA	143951671	143924726	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_143925068_143927455_143927584_143928289_143928449_143929326_143929445_143930043_143930078_143934980_143935093_143935361_143935424_143938194_143938277_143940860_143941037_143946020_143946105_143947848_143947897_143948269_143948348_143949620_143949715_143949811_143949910_143951516
transcript_74945.known	chr5	-	493	2	FSM	ENSMUSG00000066621.13	ENSMUST00000136018.2	493	2	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATGTGTTCAAGGCCGAT	NA	False	NA	NA	False	NA	NA	NA	144160376	144155137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_144155567_144160312
transcript_74946.known	chr5	-	5106	25	FSM	ENSMUSG00000066621.13	ENSMUST00000085701.7	5106	25	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_17	9.68236871271121	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTGACAAGATTTTTATT	NA	False	NA	-6	True	AATAAA	-17	NA	144160433	144131259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_144132836_144132949_144133070_144133169_144133277_144134709_144134803_144135372_144135509_144135946_144136128_144136547_144136605_144137632_144137713_144137829_144137927_144140225_144140329_144141442_144141571_144142982_144143141_144143234_144143385_144144211_144144368_144145412_144145559_144146677_144147184_144148222_144148369_144149390_144149493_144150873_144150975_144151062_144151238_144153070_144153197_144153720_144153844_144154043_144154227_144155331_144155567_144160312
transcript_74947.known	chr5	+	1796	1	FSM	ENSMUSG00000104662.2	ENSMUST00000199664.2	1796	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAAGTGTGTCTGTCCCTCT	NA	False	NA	NA	False	AATAAA	-10	NA	144160542	144162338	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_144160500_144162300
transcript_74948.known	chr5	+	669	3	FSM	ENSMUSG00000047843.17	ENSMUST00000110695.8	669	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	139.5	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTAGCTTGTTCTGCTC	6288	False	NA	0	True	AATAAA	-15	NA	144181246	144201205	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_144181426_144192619_144192723_144200818
transcript_74949.known	chr5	+	955	3	FSM	ENSMUSG00000047843.17	ENSMUST00000056578.7	955	3	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_1	16.5	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTCTGCAGTCAAGGTAAG	1629	False	NA	3	True	ATTAAA	-16	NA	144192043	144201384	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_144192330_144192619_144192723_144200818
transcript_74950.known	chr5	-	3247	14	FSM	ENSMUSG00000038859.8	ENSMUST00000055190.8	3247	14	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_13	4.28979799803037	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGCTGTAAGTGGTACC	NA	False	NA	-1	True	AATAAA	-17	NA	144294922	144201335	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_144202843_144203417_144203456_144212582_144212776_144214454_144214527_144215337_144215549_144217629_144217778_144218799_144218968_144221253_144221407_144222267_144222406_144222884_144222957_144223059_144223122_144255738_144255826_144261366_144261443_144294600
transcript_74951.known	chr5	+	2536	5	FSM	ENSMUSG00000059991.8	ENSMUST00000071782.8	2536	5	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_1	16.768646337734	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGCTTCTTGTTCTCTC	NA	False	NA	11	True	ATTAAA	-17	NA	144482711	144494288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_144483294_144484928_144485146_144490209_144490455_144492106_144492287_144492976
transcript_74953.known	chr5	-	2805	8	FSM	ENSMUSG00000043388.9	ENSMUST00000061446.8	2805	8	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_7	5.20204041600946	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGTGTGGCAAGAATATC	NA	False	NA	-15	True	AATAAA	-17	NA	144698459	144672724	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_144674303_144674613_144674727_144680405_144680609_144685466_144685552_144687625_144687793_144689097_144689258_144692020_144692327_144698266
transcript_74958.known	chr5	+	2621	12	FSM	ENSMUSG00000045482.17	ENSMUST00000136379.2	2621	12	0	0	0	0	multi-exon	TRUE	canonical	3	40	junction_10	7.89497172334371	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAACAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	144704901	144724717	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_144705056_144707898_144708060_144708417_144708468_144713912_144714024_144714690_144714796_144716793_144716878_144718785_144718843_144719005_144719132_144720797_144720876_144721067_144722376_144723441_144723581_144724469
transcript_74960.known	chr5	+	1632	10	FSM	ENSMUSG00000029621.15	ENSMUST00000031625.15	1632	10	0	0	0	0	multi-exon	TRUE	canonical	3	332	junction_5	31.8084545015595	2942	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTTTTCTTTATACTCT	NA	False	NA	22	True	ATTAAA	-23	NA	145020639	145045571	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_145020783_145027962_145028057_145029267_145029373_145032861_145033085_145034025_145034134_145037866_145038080_145041251_145041328_145041507_145041702_145043854_145043946_145045186
transcript_74961.known	chr5	+	1685	11	FSM	ENSMUSG00000029621.15	ENSMUST00000127694.8	1685	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	145.969209081916	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAAGTGTTTTTTCTTTAT	NA	False	NA	17	True	ATTAAA	-18	NA	145020715	145045566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_145020783_145027962_145028057_145029267_145029373_145032861_145033085_145034025_145034134_145037866_145038080_145039048_145039183_145041251_145041328_145041507_145041702_145043854_145043946_145045186
transcript_74980.known	chr5	-	2353	6	FSM	ENSMUSG00000029623.15	ENSMUST00000031627.9	2353	6	0	0	0	0	multi-exon	FALSE	canonical	3	415	junction_5	28.7708185493566	7825	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTGATGCTTCTGGTTG	NA	False	NA	NA	False	ATTAAA	-18	NA	145077048	145065578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_145067186_145068174_145068327_145069668_145069791_145071874_145071983_145073711_145073804_145076776
transcript_74981.known	chr5	+	1394	10	FSM	ENSMUSG00000029622.17	ENSMUST00000196111.5	1394	10	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_6	583.199688394301	1496	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAACAAACAACC	8129	False	NA	-84	True	NA	NA	NA	145051121	145064883	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_145051152_145058466_145058550_145059341_145059447_145060378_145060602_145061396_145061505_145062387_145062595_145062688_145062777_145063536_145063743_145064445_145064537_145064630
transcript_74982.known	chr5	-	448	2	FSM	ENSMUSG00000029623.15	ENSMUST00000148781.2	448	2	0	0	0	0	multi-exon	FALSE	canonical	3	415	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCACACACACACACACACA	NA	False	NA	NA	False	NA	NA	NA	145076808	145073387	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_145073804_145076776
transcript_74985.known	chr5	-	3087	9	FSM	ENSMUSG00000029624.11	ENSMUST00000031628.10	3087	9	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_5	16.4350045634311	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGTGCGTCTCATATATA	NA	False	NA	2	True	AATAAA	-30	NA	145103918	145084323	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_145085316_145088095_145088279_145088927_145089045_145091483_145092189_145095549_145095652_145096284_145096504_145097848_145097990_145101870_145102344_145103763
transcript_74989.known	chr5	+	928	6	FSM	ENSMUSG00000038722.18	ENSMUST00000160075.2	928	6	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	298.93035978301	865	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGCTACATTCTTTCTTTT	NA	False	NA	13	True	AATAAA	-14	NA	145077224	145084881	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_145077374_145078114_145078247_145079257_145079378_145081708_145081832_145083252_145083420_145084644
transcript_74990.known	chr5	+	867	6	FSM	ENSMUSG00000038722.18	ENSMUST00000162594.8	867	6	0	0	0	0	multi-exon	FALSE	canonical	3	705	junction_1	67.372397908936	5013	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTTTCTTTTAAGAGTG	NA	False	NA	20	True	AATAAA	-21	NA	145077171	145084888	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_145077253_145078114_145078247_145079257_145079378_145081708_145081832_145083252_145083420_145084644
transcript_74991.known	chr5	+	741	6	FSM	ENSMUSG00000038722.18	ENSMUST00000159018.8	741	6	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	311.754133894003	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACATTCTTTCTTTTAAG	NA	False	NA	16	True	AATAAA	-17	NA	145077217	145084884	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_145077253_145078114_145078171_145079257_145079378_145081708_145081832_145083252_145083420_145084644
transcript_74992.known	chr5	+	705	5	FSM	ENSMUSG00000038722.18	ENSMUST00000162308.8	705	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	349.672257263856	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACATTCTTTCTTTTAAG	NA	False	NA	16	True	AATAAA	-17	NA	145077206	145084884	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_145077253_145078114_145078247_145079257_145079378_145083252_145083420_145084644
transcript_74994.nnic	chr5	+	346	2	NNC	ENSMUSG00000029625.17	novel	1606	7	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	124	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCTGTGTTTCATTACTT	NA	False	NA	21	True	ATTAAA	-13	NA	145104020	145118849	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_145104103_145118585
transcript_74995.known	chr5	+	1713	8	FSM	ENSMUSG00000029625.17	ENSMUST00000160629.8	1713	8	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_6	186.36939400129	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGTTTCATTACTTAA	NA	False	NA	23	True	ATTAAA	-15	NA	145104022	145118851	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_145104270_145107324_145107376_145110116_145110270_145112366_145112463_145112920_145113015_145114039_145114113_145115645_145115739_145117945
transcript_74996.known	chr5	+	1756	8	FSM	ENSMUSG00000029625.17	ENSMUST00000160422.8	1756	8	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_6	266.097419631784	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGTGTTTCATTACTTA	NA	False	NA	22	True	ATTAAA	-14	NA	145104056	145118850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_145104270_145107324_145107376_145110116_145110270_145112366_145112463_145112920_145113015_145114039_145114113_145115567_145115739_145117945
transcript_74999.known	chr5	-	540	5	FSM	ENSMUSG00000038690.16	ENSMUST00000037056.9	540	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	2948.80004196622	3283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATACTGCTTGCCTGGTGT	9969	False	NA	-13	True	AATAAA	-14	NA	145128402	145120518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_145120678_145121341_145121459_145123935_145124044_145125002_145125069_145128312
transcript_75.known	ERCC-00157	+	1003	1	FSM	ERCC-00157A	DQ839618	1003	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00157_+_0_1000
transcript_750.known	SIRV7	-	2247	6	FSM	SIRV7A	SIRV702	2247	6	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_3	1351.00954844886	10523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTTAATATGAATCAAC	NA	False	NA	NA	False	TATAAA	-22	NA	114916	1000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV7_-_2676_2993_3112_4095_4180_4725_4811_43028_43078_114680
transcript_75000.known	chr5	-	607	5	FSM	ENSMUSG00000038690.16	ENSMUST00000162360.8	607	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	2943.81371480941	7525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTGCCTGGTGTAGT	9969	False	NA	-10	True	AATAAA	-17	NA	145128402	145120515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_145120678_145121341_145121459_145123935_145124044_145125002_145125133_145128312
transcript_75006.known	chr5	-	510	4	FSM	ENSMUSG00000038690.16	ENSMUST00000161845.2	510	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	2967.72853655227	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTGGTATGTGTGAAACC	8648	False	NA	NA	False	NA	NA	NA	145128321	145121195	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_145121459_145123935_145124044_145125002_145125133_145128312
transcript_75007.known	chr5	-	2101	1	FSM	ENSMUSG00000038690.16	ENSMUST00000200584.2	2101	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8631	False	NA	NA	False	NA	NA	NA	145128338	145126237	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_145126200_145128300
transcript_75009.known	chr5	-	1967	3	FSM	ENSMUSG00000029627.13	ENSMUST00000031632.9	1967	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	1	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCAGTTGTTTCTTTGTCT	1591	False	NA	NA	False	NA	NA	NA	145138678	145131755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_145133010_145135486_145135611_145138089
transcript_75010.known	chr5	-	816	3	FSM	ENSMUSG00000029627.13	ENSMUST00000162220.2	816	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	10	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCGCTGCCCTCGTTAAGC	1602	False	NA	NA	False	NA	NA	NA	145138667	145132432	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_145133010_145135486_145135611_145138552
transcript_75011.nnic	chr5	-	1558	3	NNC	ENSMUSG00000029627.13	novel	1967	3	NA	NA	-2219	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	9.5	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCAGTTGTTTCTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	145140897	145131755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_145133010_145135486_145135611_145140717
transcript_75012.known	chr5	+	3794	6	FSM	ENSMUSG00000055991.16	ENSMUST00000085671.10	3794	6	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_2	9.08625335328044	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGACTTGAGGTTTCTCTC	937	False	NA	10	True	ATTAAA	-15	NA	145141371	145158560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_145142519_145144385_145144519_145148555_145148639_145149314_145149451_145155096_145155694_145156862
transcript_75013.nic	chr5	+	2679	5	NIC	ENSMUSG00000055991.16	novel	378	4	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	28.4901298698339	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGACTTGAGGTTTCTCTC	4927	False	NA	10	True	ATTAAA	-15	NA	145145361	145158560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_145145527_145148555_145148639_145149314_145149451_145155096_145155694_145156862
transcript_75019.known	chr5	+	1765	5	FSM	ENSMUSG00000007812.17	ENSMUST00000200039.5	1765	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_3	167.334059593377	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAATGCTTGATGTCTTG	1291	False	NA	NA	False	AATAAA	-16	NA	145168524	145175132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_145168642_145170250_145170413_145172115_145172202_145172546_145172674_145173859
transcript_75020.known	chr5	+	4157	5	FSM	ENSMUSG00000007812.17	ENSMUST00000199322.5	4157	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	175.330402383614	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTAGACTCTTTGTTTTGA	1331	False	NA	15	True	NA	NA	NA	145168564	145184111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_145168642_145170250_145170413_145172115_145172202_145179729_145179835_145180384
transcript_75023.known	chr5	+	1150	4	FSM	ENSMUSG00000007812.17	ENSMUST00000196069.5	1150	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	192.902969276151	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTGTACTTTTTGTAG	1305	False	NA	NA	False	AATACA	-16	NA	145168538	145174658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_145168642_145170250_145170413_145172115_145172202_145173859
transcript_75024.known	chr5	+	597	4	FSM	ENSMUSG00000007812.17	ENSMUST00000085661.9	597	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	194.635271440941	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATGCCACCATTATGTAAA	1333	False	NA	NA	False	NA	NA	NA	145168566	145174092	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_145168642_145170250_145170413_145172546_145172674_145173859
transcript_75025.known	chr5	+	4104	4	FSM	ENSMUSG00000007812.17	ENSMUST00000167316.8	4104	4	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_2	68.241401574769	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTAGACTCTTTGTTTTGAG	1299	False	NA	16	True	NA	NA	NA	145168532	145184112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_145168642_145170250_145170413_145179729_145179835_145180384
transcript_75029.nnic	chr5	+	792	4	NNC	ENSMUSG00000007812.17	novel	4104	4	NA	NA	-17	1853	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	184.05071764779	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTAGTGTTTTTGCTTG	1274	False	NA	NA	False	NA	NA	NA	145168507	145185965	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_145168642_145170250_145170413_145179729_145179835_145185574
transcript_7503.nic	chr10	-	1241	6	ISM	ENSMUSG00000020076.8	ENSMUST00000020270.6	2535	15	-54	24286	-54	194	5prime_fragment	FALSE	canonical	3	233	junction_5	19.5714077163601	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCAAAGCGTACTCTGAAT	8052	False	NA	NA	False	ATTAAA	-28	NA	62487051	62476079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_62476412_62476523_62476642_62478554_62478734_62479075_62479152_62482692_62482981_62486803
transcript_75031.known	chr5	+	601	3	FSM	ENSMUSG00000007812.17	ENSMUST00000199003.5	601	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	213	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACTTGTGTGAAATGCCA	1332	False	NA	NA	False	CATAAA	-17	NA	145168565	145174222	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_145168642_145170250_145170413_145173859
transcript_75034.known	chr5	-	2388	5	FSM	ENSMUSG00000029634.16	ENSMUST00000067837.10	2388	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_4	36.6401419211225	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAACCTTTAAAATGTTT	2760	False	NA	NA	False	AGTAAA	-24	NA	146157786	146146766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_146148743_146152906_146153003_146154710_146154907_146157211_146157295_146157749
transcript_75035.known	chr5	-	3452	5	FSM	ENSMUSG00000029634.16	ENSMUST00000161859.8	3452	5	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_4	27.6348964173923	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTGTGCAAACTTATTTC	2181	False	NA	NA	False	ATTAAA	-28	NA	146158365	146146001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_146148743_146152906_146153003_146154710_146154907_146157211_146157295_146158029
transcript_75039.known	chr5	+	2467	13	FSM	ENSMUSG00000029635.16	ENSMUST00000161181.8	2467	13	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	40.014580675882	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACAAGGTGTTATGTAA	NA	False	NA	NA	False	AATAAA	-19	NA	146168059	146239641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_146168145_146196314_146196391_146205024_146205136_146208404_146208546_146220438_146220497_146222917_146223050_146229448_146229578_146231972_146232043_146233168_146233242_146235612_146235711_146236307_146236387_146236501_146236661_146238385
transcript_7504.known	chr10	-	1500	3	FSM	ENSMUSG00000020076.8	ENSMUST00000218158.2	1500	3	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	1.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTGCCTGGATTCTTTCC	8121	False	NA	NA	False	ATTAAA	-17	NA	62486982	62481769	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_62482981_62483312_62483423_62486803
transcript_75045.known	chr5	+	5196	10	FSM	ENSMUSG00000029636.12	ENSMUST00000016143.9	5196	10	0	0	0	0	multi-exon	TRUE	canonical	3	97	junction_1	19.5037191768236	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTTCTGCTTATTTATA	NA	False	NA	15	True	AATAAA	-19	NA	146321794	146410425	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_146322149_146358727_146358816_146372134_146372278_146388680_146388816_146390125_146390280_146392353_146392472_146397774_146397951_146403607_146403875_146405024_146405390_146407029
transcript_75049.nic	chr5	+	644	4	ISM	ENSMUSG00000029636.12	ENSMUST00000016143.9	5196	10	270	21416	270	-16057	5prime_fragment	FALSE	canonical	3	97	junction_1	24.4994331000173	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCATAGTCATGCTATTGT	NA	False	NA	NA	False	GATAAA	-24	NA	146322064	146389009	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_146322149_146358727_146358816_146372134_146372278_146388680
transcript_75052.known	chr5	+	1233	1	FSM	ENSMUSG00000094090.3	ENSMUST00000178171.3	1233	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATGTTGCCTTGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	146511697	146512930	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_146511700_146512900
transcript_75056.known	chr5	+	1856	6	FSM	ENSMUSG00000041453.13	ENSMUST00000035983.12	1856	6	0	0	0	0	multi-exon	FALSE	canonical	3	6955	junction_1	2705.44403749181	3263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTTGTTAGTGATGGTT	NA	False	NA	NA	False	ATTAAA	-19	NA	146769699	146773842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_146769982_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
transcript_75058.known	chr5	+	899	6	FSM	ENSMUSG00000041453.13	ENSMUST00000075453.9	899	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	5104.64844626934	1029	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTGAAGTGTTTTCCTTA	NA	False	NA	1	True	AATAAA	-15	NA	146770004	146772795	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_146770377_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
transcript_75059.known	chr5	+	1067	6	FSM	ENSMUSG00000041453.13	ENSMUST00000099272.3	1067	6	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	5077.72757835629	2226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTTTTCCTTAG	NA	False	NA	2	True	AATAAA	-16	NA	146770011	146772796	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_146770551_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
transcript_75072.known	chr5	+	1126	4	FSM	ENSMUSG00000029641.9	ENSMUST00000031646.8	1126	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0.816496580927726	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCTTGTTTTCTGAATGT	NA	False	NA	NA	False	ATTAAA	-18	NA	146781880	146784536	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_146782151_146782469_146782527_146782649_146782730_146783817
transcript_75074.known	chr5	+	1298	9	FSM	ENSMUSG00000016503.19	ENSMUST00000146511.8	1298	9	0	0	0	0	multi-exon	FALSE	canonical	3	398	junction_8	56.9906790624572	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGCTGTTTCCGTCGT	NA	False	NA	23	True	ATTAAA	-23	NA	146885466	146892424	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_146885786_146887342_146887444_146887996_146888094_146888683_146888773_146889536_146889611_146890036_146890118_146890657_146890888_146891933_146891994_146892177
transcript_75075.known	chr5	+	1426	8	FSM	ENSMUSG00000016503.19	ENSMUST00000132102.2	1426	8	0	0	0	0	multi-exon	FALSE	canonical	3	430	junction_2	50.1141553997328	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCCGACTCTTTGCTGTT	NA	False	NA	15	True	ATTAAA	-15	NA	146885514	146892416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_146885786_146887342_146887444_146887996_146888094_146888683_146888773_146889536_146889611_146890036_146890118_146890657_146890888_146891933
transcript_75076.known	chr5	-	1257	5	FSM	ENSMUSG00000016510.12	ENSMUST00000110564.8	1257	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	53.0023584380922	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAGGAGTGAGGAAGACAG	NA	False	NA	NA	False	GGGGCT	-7	NA	146900559	146892176	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_146892626_146893596_146893755_146895634_146896087_146900030_146900191_146900521
transcript_75077.known	chr5	-	2131	5	FSM	ENSMUSG00000016510.12	ENSMUST00000016654.9	2131	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	53.5863788662753	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCTGTGCATTTGTGCTA	NA	False	NA	2	True	NA	NA	NA	146900597	146891329	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_146892626_146893596_146893755_146895634_146896087_146900030_146900191_146900532
transcript_75078.known	chr5	-	4927	4	FSM	ENSMUSG00000016510.12	ENSMUST00000066675.10	4927	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	27.6445694888204	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTCTCGGGGAATATAAAC	NA	False	NA	NA	False	AATAAA	-17	NA	146900595	146888382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_146892626_146893596_146893755_146895634_146896087_146900521
transcript_75079.known	chr5	-	1134	4	FSM	ENSMUSG00000016510.12	ENSMUST00000110566.2	1134	4	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_3	16.996731711976	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAGGAGTGAGGAAGACAG	NA	False	NA	NA	False	GGGGCT	-7	NA	146900607	146892176	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_146892626_146893596_146893755_146895634_146896087_146900532
transcript_75080.nic	chr5	-	1548	4	NIC	ENSMUSG00000016510.12	novel	1134	4	NA	NA	-16	-409	intron_retention	FALSE	canonical	1	3	junction_3	56.7156650905785	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTGTAGTGAATCTGAC	NA	False	NA	-18	True	AATAAA	-17	NA	146900626	146891738	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_146892626_146893596_146893755_146895634_146896087_146900575
transcript_75081.known	chr5	-	4557	10	FSM	ENSMUSG00000016520.8	ENSMUST00000016664.8	4557	10	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	11.6724853214835	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGCCTCATGTTTCCTCG	4960	False	NA	NA	False	NA	NA	NA	147013396	146953464	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_146955867_146956816_146956976_146961161_146961394_146964016_146964195_146964862_146965001_146965896_146966266_146969684_146969885_146970088_146970331_146978840_146979309_147013227
transcript_75093.known	chr5	+	1081	3	FSM	ENSMUSG00000106820.2	ENSMUST00000201128.2	1081	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	30.5	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGAGTTGTCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	147355410	147359854	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_147355512_147357439_147357607_147359041
transcript_75095.known	chr5	+	712	2	FSM	ENSMUSG00000029647.16	ENSMUST00000176806.2	712	2	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAACAGAGAGACT	NA	False	NA	NA	False	NA	NA	NA	147466747	147468555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_147466931_147468026
transcript_75099.known	chr5	+	1579	6	FSM	ENSMUSG00000029649.11	ENSMUST00000031654.10	1579	6	0	0	0	0	multi-exon	FALSE	canonical	3	2983	junction_1	193.876661823954	11811	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATACTGTTTGTGGACTCTG	NA	False	NA	NA	False	AATAAA	-26	NA	147797270	147813266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_147797502_147799362_147799461_147805532_147805594_147806221_147806324_147809375_147809470_147812273
transcript_751.known	SIRV7	-	428	3	FSM	SIRV7A	SIRV704	428	3	0	0	0	0	multi-exon	FALSE	canonical	3	4944	junction_1	1233	16047	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTTTCGTATTTGCTGCT	NA	False	NA	NA	False	ATTAAA	-33	NA	114738	55849	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV7_-_56098_78841_78964_114680
transcript_75100.known	chr5	-	2434	6	FSM	ENSMUSG00000029650.11	ENSMUST00000031655.4	2434	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	0.8	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATGTGGTTTTCATTT	NA	False	NA	NA	False	AATGAA	-26	NA	147831625	147815250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_147816025_147816502_147816660_147821006_147821091_147822780_147823652_147830642_147830856_147831290
transcript_75101.known	chr5	-	2210	6	FSM	ENSMUSG00000029650.11	ENSMUST00000118527.8	2210	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	0.894427190999916	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTGGTTTTCATTTTTCC	NA	False	NA	NA	False	AATGAA	-30	NA	147831625	147815246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_147816025_147816502_147816660_147821006_147821091_147822780_147823652_147830642_147830856_147831518
transcript_7511.nnic	chr10	-	768	6	NNC	ENSMUSG00000020074.8	novel	4352	25	NA	NA	-3	-1583	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	172.50437675607	85	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGAACTTGTTGCTGTTCC	NA	False	NA	NA	False	NA	NA	NA	62628068	62617827	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_62618072_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627908
transcript_75110.known	chr5	+	1009	4	FSM	ENSMUSG00000029651.17	ENSMUST00000085554.5	1009	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	28.87136220471	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGAATTATTGGGAAATG	NA	False	NA	NA	False	NA	NA	NA	148239983	148250810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_148240080_148240292_148240413_148243439_148243538_148250115
transcript_75117.known	chr5	+	585	4	FSM	ENSMUSG00000029651.17	ENSMUST00000152105.8	585	4	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	27.4752413799932	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGCTCCTCCTCTGGA	NA	False	NA	15	True	ATTAAA	-23	NA	148239974	148250270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_148240187_148240292_148240413_148243439_148243538_148250115
transcript_75118.known	chr5	-	7179	13	FSM	ENSMUSG00000041313.15	ENSMUST00000048116.15	7179	13	0	0	0	0	multi-exon	TRUE	canonical	3	299	junction_1	51.9975293216472	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACTGTGTGGTCTCAAGC	5418	False	NA	-3	True	AATAAA	-20	NA	148336714	148264219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_148269354_148270699_148270809_148271301_148271469_148272186_148272405_148273916_148274020_148277345_148277486_148278742_148278966_148279547_148279667_148282612_148282770_148284962_148285122_148288875_148289260_148301971_148302062_148336538
transcript_75120.known	chr5	-	2064	6	FSM	ENSMUSG00000001687.16	ENSMUST00000201595.4	2064	6	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_5	118.120954957196	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATATTTTTTTTTCACT	NA	False	NA	NA	False	AAAAAG	-2	NA	148489599	148441938	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_148442998_148443255_148443334_148446078_148446166_148448703_148448813_148488762_148488861_148488966
transcript_75122.known	chr5	-	2537	5	FSM	ENSMUSG00000001687.16	ENSMUST00000079324.14	2537	5	0	0	0	0	multi-exon	FALSE	canonical	3	361	junction_2	34.1641259217911	1749	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCATTTTGTTGATGATTT	NA	False	NA	-4	True	AATAAA	-21	NA	148489472	148441444	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_148442998_148443255_148443334_148446078_148446166_148448703_148448813_148488762
transcript_75126.known	chr5	+	550	2	FSM	ENSMUSG00000086494.2	ENSMUST00000150265.2	550	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATACATCTACCCTTTGA	NA	False	NA	NA	False	TTTAAA	-5	NA	148678649	148679949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_148678795_148679544
transcript_75127.nnic	chr5	+	584	3	Intergenic	novelGene_110	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGGGCAGCTAGGAGGGGG	NA	False	NA	NA	False	NA	NA	NA	148708413	148727345	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr5_+_148708728_148708825_148708974_148727223
transcript_75129.known	chr5	-	6157	11	FSM	ENSMUSG00000041298.16	ENSMUST00000047257.15	6157	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	3.86781592116274	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTGAGATCTTTTCTGC	2443	False	NA	NA	False	AATAAA	-16	NA	148865457	148808393	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_148813147_148815667_148815795_148825688_148825824_148828438_148828566_148829319_148829479_148830492_148830599_148830958_148831087_148841376_148841540_148855405_148855567_148858046_148858223_148865335
transcript_7513.known	chr10	-	3862	25	FSM	ENSMUSG00000020074.8	ENSMUST00000219527.2	3862	25	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_11	85.6392222576133	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATGTCTTTTATTGAAGT	NA	False	NA	1	True	AATAAA	-35	NA	62628065	62580240	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_62580602_62581041_62581248_62582679_62582866_62583122_62583244_62586325_62586473_62586715_62586796_62587521_62587634_62588952_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627994
transcript_75131.known	chr5	-	546	5	FSM	ENSMUSG00000108207.3	ENSMUST00000203662.2	546	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	6.36396103067893	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTCAAATTTCCTGTATTT	NA	False	NA	-77	True	NA	NA	NA	148906692	148895479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_148895541_148895957_148896021_148900703_148900806_148901652_148901834_148906553
transcript_75136.nnic	chr5	-	527	3	NNC	ENSMUSG00000108207.3	novel	690	2	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	6.5	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCATGTGTCTGTATCAT	NA	False	NA	-5	True	ATTAAA	-13	NA	148896501	148895407	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_148895541_148895957_148896021_148896170
transcript_75137.nic	chr5	-	598	3	NIC	ENSMUSG00000108207.3	novel	690	2	NA	NA	-100	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	7.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCATGTGTCTGTATCAT	NA	False	NA	-5	True	ATTAAA	-13	NA	148897120	148895407	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_-_148895541_148895957_148896021_148896718
transcript_7514.known	chr10	-	3178	9	FSM	ENSMUSG00000020074.8	ENSMUST00000217940.2	3178	9	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_8	57.085325391032	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATGAGACAAATGTGTGG	NA	False	NA	NA	False	NA	NA	NA	62628049	62605587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627994
transcript_75142.nnic	chr5	-	747	3	NNC	ENSMUSG00000085971.5	novel	3488	4	NA	NA	12457	-803	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATAATTTTCTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	148940137	148935954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_148936439_148936680_148936782_148939975
transcript_75143.known	chr5	-	2541	2	FSM	ENSMUSG00000106951.2	ENSMUST00000152575.2	2541	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTCTCTCTGGGTTTTA	NA	False	NA	NA	False	NA	NA	NA	148932025	148927891	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_148930335_148931927
transcript_75144.known	chr5	-	690	2	FSM	ENSMUSG00000108207.3	ENSMUST00000204570.2	690	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCATGTGTCTGTATCAT	NA	False	NA	-5	True	ATTAAA	-13	NA	148896514	148895407	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_148895541_148895957
transcript_75145.known	chr5	-	792	1	FSM	ENSMUSG00000108207.3	ENSMUST00000204589.2	792	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTCCACATGTTAATTTG	NA	False	NA	NA	False	AATACA	-14	NA	148896490	148895698	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_148895700_148896500
transcript_7515.known	chr10	-	14369	13	FSM	ENSMUSG00000047146.18	ENSMUST00000174189.2	14369	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	63.2183166143765	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCACCTGGTAGTCTAT	NA	False	NA	-6	True	AATAAA	-14	NA	62734897	62640355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_62649192_62649356_62649604_62650214_62650353_62652162_62652253_62654717_62654814_62655251_62655403_62658327_62658540_62668672_62668767_62669316_62669408_62673954_62676158_62700586_62700641_62713930_62715913_62734722
transcript_75150.known	chr5	-	2838	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	0	0	0	0	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	6185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAACGTCTTTGTAACTTT	6764	False	NA	NA	False	TTTAAA	-18	NA	148989850	148983511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
transcript_75152.known	chr5	-	1092	5	FSM	ENSMUSG00000066551.13	ENSMUST00000093196.11	1092	5	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_4	3596.07178042931	1450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCTGTGTAAGATTTGTT	8188	False	NA	NA	False	AAGAAA	-14	NA	148988426	148985454	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148988088
transcript_75158.known	chr5	-	923	4	FSM	ENSMUSG00000066551.13	ENSMUST00000139443.8	923	4	0	0	0	0	multi-exon	FALSE	canonical	3	5649	junction_3	1332.80464518331	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCTTAAACTTTAAGCTTG	6793	False	NA	NA	False	AATAAA	-2	NA	148989821	148986210	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_148986712_148987104_148987251_148987397_148987562_148989709
transcript_75160.known	chr5	-	654	3	FSM	ENSMUSG00000066551.13	ENSMUST00000133667.2	654	3	0	0	0	0	multi-exon	FALSE	canonical	3	5649	junction_2	1488.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTTAGAAATTGCTCAAAA	6788	False	NA	NA	False	NA	NA	NA	148989826	148986877	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_148987251_148987397_148987562_148989709
transcript_75164.nnic	chr5	-	962	2	NNC	ENSMUSG00000097191.3	novel	1740	4	NA	NA	-227	-61129	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGAATCTCTGTGTGTC	6628	False	NA	NA	False	AATAAA	-24	NA	149121100	149117507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_149118217_149120847
transcript_75165.known	chr5	-	377	2	FSM	ENSMUSG00000097191.3	ENSMUST00000200718.2	377	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTGTCTGAGATGTGCA	8079	False	NA	NA	False	AATAAA	-12	NA	149060222	149056378	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_149056640_149060106
transcript_75170.known	chr5	+	3148	10	FSM	ENSMUSG00000041264.17	ENSMUST00000100410.10	3148	10	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_9	101.142119787266	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTTGGTTTCATTTT	NA	False	NA	13	True	ATTAAA	-13	NA	149121475	149152241	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_149121617_149124517_149124687_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161_149150333_149150832
transcript_75171.known	chr5	+	3827	10	FSM	ENSMUSG00000041264.17	ENSMUST00000122160.8	3827	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	142.108287696738	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTTGTTGGTTTCATTT	NA	False	NA	12	True	ATTAAA	-12	NA	149121472	149152240	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_149121617_149122294_149122472_149124517_149124687_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
transcript_75172.known	chr5	+	2931	9	FSM	ENSMUSG00000041264.17	ENSMUST00000117878.8	2931	9	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_8	110.241141934398	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTGGTTTCATTTTGT	NA	False	NA	15	True	ATTAAA	-15	NA	149121525	149152243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_149121617_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161_149150333_149150832
transcript_75174.known	chr5	+	3604	9	FSM	ENSMUSG00000041264.17	ENSMUST00000119685.8	3604	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	126.885713833355	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTTGTTGGTTTCATTT	NA	False	NA	12	True	ATTAAA	-12	NA	149121476	149152240	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_149121617_149124517_149124645_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
transcript_75175.known	chr5	+	3757	9	FSM	ENSMUSG00000041264.17	ENSMUST00000050472.16	3757	9	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_1	75.8798392196504	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGGTTTCATTTTGTG	NA	False	NA	16	True	ATTAAA	-16	NA	149121369	149152244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_149121617_149124517_149124687_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
transcript_75176.known	chr5	+	3577	9	FSM	ENSMUSG00000041264.17	ENSMUST00000126168.8	3577	9	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_3	123.51492824756	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTTGTTGGTTTCATTT	NA	False	NA	12	True	ATTAAA	-12	NA	149121487	149152240	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_149121617_149124517_149124687_149125154_149125284_149130707_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
transcript_75177.known	chr5	+	3792	8	FSM	ENSMUSG00000041264.17	ENSMUST00000121416.8	3792	8	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_1	82.9762690441658	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTTTTTGTTGGTTTCAT	NA	False	NA	10	True	ATTAAA	-10	NA	149121159	149152238	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_149121617_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
transcript_75184.nnic	chr5	+	1080	6	NNC	ENSMUSG00000060063.10	novel	1251	5	NA	NA	-115	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	14.8781719307178	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAGAGTCTTTTATTGAC	NA	False	NA	20	True	ATTAAA	-32	NA	149201461	149224963	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_149201583_149201868_149201993_149209190_149209291_149215985_149216057_149222153_149222236_149224381
transcript_75187.known	chr5	+	1251	5	FSM	ENSMUSG00000060063.10	ENSMUST00000071130.5	1251	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	7.22841614740048	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAGAGTCTTTTATTGAC	NA	False	NA	20	True	ATTAAA	-32	NA	149201576	149224963	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_149201993_149209190_149209291_149215985_149216057_149222153_149222236_149224381
transcript_7519.known	chr10	-	361	2	FSM	ENSMUSG00000047146.18	ENSMUST00000228901.2	361	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CGAAGCAATTAATTAAAAGA	2803	False	NA	-19	True	NA	NA	NA	62723291	62715651	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_62715913_62723191
transcript_75191.known	chr5	+	275	3	FSM	ENSMUSG00000107271.4	ENSMUST00000202485.2	275	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGCCTTTTCATTGCAG	NA	False	NA	NA	False	NA	NA	NA	149300164	149317061	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_149300257_149315572_149315668_149316973
transcript_75192.known	chr5	+	1456	7	FSM	ENSMUSG00000029660.11	ENSMUST00000201683.4	1456	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	0.957427107756338	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTTGGAAATTATTTTCA	NA	False	NA	NA	False	AATAAA	-25	NA	149363167	149394444	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_149363253_149369234_149369320_149376758_149376925_149380282_149380428_149384285_149384463_149386581_149386744_149393808
transcript_75193.known	chr5	+	1009	6	FSM	ENSMUSG00000029660.11	ENSMUST00000202920.4	1009	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.16619037896906	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGACTTTTTTTTCTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	149363170	149394085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_149363253_149376758_149376925_149380282_149380428_149384285_149384463_149386581_149386744_149393808
transcript_75196.known	chr5	+	350	2	FSM	ENSMUSG00000029660.11	ENSMUST00000201454.2	350	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTCCTTGGAACCTTCC	NA	False	NA	NA	False	NA	NA	NA	149363146	149364466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_149363253_149364222
transcript_752.known	SIRV8001	+	8001	1	FSM	SIRV8001A	SIRV8001	8001	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	8001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV8001_+_0_8000
transcript_75202.nic	chr5	+	945	4	ISM	ENSMUSG00000029658.18	ENSMUST00000202902.2	2574	23	67602	0	15557	0	3prime_fragment	FALSE	canonical	1	2	junction_1	0.816496580927726	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATCAGATTCTCGCTGTT	NA	False	NA	NA	False	NA	NA	NA	149520799	149535359	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_149521054_149522668_149522863_149529753_149529852_149534960
transcript_7521.known	chr10	-	553	2	FSM	ENSMUSG00000047146.18	ENSMUST00000227494.2	553	2	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CGAAGCAATTAATTAAAAGA	NA	False	NA	-19	True	NA	NA	NA	62728765	62715651	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_62715913_62728473
transcript_75212.known	chr5	-	3802	18	FSM	ENSMUSG00000029657.16	ENSMUST00000202361.4	3802	18	0	0	0	0	multi-exon	FALSE	canonical	3	1194	junction_12	107.653101726883	659	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGAGTTCTTTTGTTGTC	NA	False	NA	11	True	TTTAAA	-13	NA	149559803	149540008	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149546929_149547062_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434
transcript_75215.known	chr5	-	3240	17	FSM	ENSMUSG00000029657.16	ENSMUST00000074846.14	3240	17	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_6	344.38590613402	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGTTGGCTTTGTCTCC	NA	False	NA	-6	True	AATAAA	-24	NA	149559674	149540309	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434
transcript_75223.nnic	chr5	+	852	2	NNC	ENSMUSG00000106674.2	novel	299	2	NA	NA	-57	-3350	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTAGTGTGTTTTCTCCC	NA	False	NA	NA	False	AATAAA	-20	NA	149565017	149567905	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_149565217_149567252
transcript_75224.known	chr5	+	299	2	FSM	ENSMUSG00000106674.2	ENSMUST00000202583.2	299	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAGGCAAGAGTAAACTTG	NA	False	NA	NA	False	AATAAA	-18	NA	149565074	149571255	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_149565217_149571098
transcript_75232.known	chr5	+	4570	15	FSM	ENSMUSG00000051950.11	ENSMUST00000100404.6	4570	15	0	0	0	0	multi-exon	FALSE	canonical	3	479	junction_13	51.6933659344471	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTGGCTTCTGTTGTCT	NA	False	NA	14	True	AATAAA	-22	NA	149601694	149686064	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_149601845_149619889_149619940_149626743_149626784_149632784_149632895_149648875_149648953_149650218_149650331_149653388_149653526_149656137_149656202_149658834_149658955_149662996_149663067_149668890_149669005_149669969_149670070_149673895_149674016_149677529_149677675_149682903
transcript_75240.nnic	chr5	+	1105	11	NNC	ENSMUSG00000051950.11	novel	4570	15	NA	NA	-15	-9935	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_10	165.154503420282	110	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAATGAGTGTTTGTTCA	NA	False	NA	NA	False	ATTAAA	-31	NA	149601679	149664665	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_149601845_149619889_149619940_149626743_149626784_149632784_149632895_149648875_149648953_149650218_149650331_149653388_149653526_149656137_149656202_149658834_149658955_149662996_149663067_149664505
transcript_75251.nnic	chr5	+	447	3	Intergenic	novelGene_111	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCACGCCTGGCTCTATCC	NA	False	NA	NA	False	NA	NA	NA	149984720	149985620	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr5_+_149984981_149985101_149985205_149985536
transcript_75252.nic	chr5	+	1200	7	NIC	ENSMUSG00000056602.14	novel	592	4	NA	NA	-61	425	combination_of_known_junctions	FALSE	canonical	3	15	junction_5	2.26691175145591	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTTCTCTCTTCTCAAA	1214	False	NA	NA	False	AAGAAA	-26	NA	150119869	150269814	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr5_+_150120201_150233734_150233935_150249595_150249650_150263817_150263958_150269017_150269109_150269315_150269396_150269510
transcript_75253.known	chr5	+	592	4	FSM	ENSMUSG00000056602.14	ENSMUST00000202600.4	592	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0.816496580927726	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTACAAAAGGCAAAACGGCA	1275	False	NA	NA	False	NA	NA	NA	150119930	150263885	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_150120201_150233734_150233935_150249595_150249650_150263817
transcript_75254.known	chr5	-	486	2	FSM	ENSMUSG00000106738.2	ENSMUST00000202066.2	486	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCTATGCATGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	150425769	150423279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_150423316_150425319
transcript_75255.nic	chr5	+	2055	10	ISM	ENSMUSG00000041147.11	ENSMUST00000202313.2	10517	27	-49	32771	-35	0	5prime_fragment	FALSE	canonical	3	58	junction_1	8.45175122477183	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAAAAAAGAAAGT	335	False	NA	NA	False	NA	NA	NA	150446059	150460441	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_150446362_150446639_150446745_150452934_150453163_150454533_150454643_150455148_150455199_150455519_150455561_150455755_150455868_150458057_150458108_150458903_150459016_150459495
transcript_75261.nic	chr5	+	937	4	ISM	ENSMUSG00000041147.11	ENSMUST00000202975.4	2534	8	-37	5606	-35	-1032	5prime_fragment	FALSE	canonical	3	58	junction_1	8.9566858950296	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTCTTGCATGTGTTTA	335	False	NA	NA	False	AATAAA	-2	NA	150446059	150454835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_150446362_150446639_150446745_150452934_150453163_150454533
transcript_75263.nic	chr5	+	778	3	ISM	ENSMUSG00000041147.11	ENSMUST00000202975.4	2534	8	-37	7136	-35	0	5prime_fragment	FALSE	canonical	3	58	junction_1	9.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCAAAAAAGAAAAAAAAAGC	335	False	NA	NA	False	NA	NA	NA	150446059	150453305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_150446362_150446639_150446745_150452934
transcript_75264.nic	chr5	+	1251	3	ISM	ENSMUSG00000041147.11	ENSMUST00000202975.4	2534	8	-37	6663	-35	473	5prime_fragment	FALSE	canonical	3	58	junction_1	9.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTCTGTAACATTTATTAC	335	False	NA	NA	False	AGTAAA	-17	NA	150446059	150453778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr5_+_150446362_150446639_150446745_150452934
transcript_75265.known	chr5	+	937	3	FSM	ENSMUSG00000041147.11	ENSMUST00000200686.4	937	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	32.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCAAAAAAGAAAAAAAAAGC	370	False	NA	NA	False	NA	NA	NA	150446094	150453305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_150446556_150446639_150446745_150452934
transcript_75270.known	chr5	+	10517	27	FSM	ENSMUSG00000041147.11	ENSMUST00000202313.2	10517	27	0	0	0	0	multi-exon	TRUE	canonical	3	58	junction_1	34.4104188157733	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTACTGGCTAAGTATGGT	384	False	NA	13	True	AATAAA	-22	NA	150446108	150493212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_150446362_150446639_150446745_150452934_150453163_150454533_150454643_150455148_150455199_150455519_150455561_150455755_150455868_150458057_150458108_150458903_150459016_150459495_150460603_150462113_150466923_150468359_150468456_150471405_150471476_150471953_150472301_150474296_150474479_150475671_150475860_150476401_150476573_150477619_150477975_150480325_150480482_150480565_150480711_150481854_150481977_150483468_150483662_150483892_150484057_150484149_150484289_150490352_150490595_150491071_150491234_150492403
transcript_75271.known	chr5	+	2534	8	FSM	ENSMUSG00000041147.11	ENSMUST00000202975.4	2534	8	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	9.0395954397465	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAAAAAAGAAAGT	372	False	NA	NA	False	NA	NA	NA	150446096	150460441	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_150446362_150446639_150446745_150452934_150453163_150454533_150454643_150455148_150455868_150458057_150458108_150458903_150459016_150459495
transcript_75272.known	chr5	-	1905	5	FSM	ENSMUSG00000041132.12	ENSMUST00000016279.11	1905	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTGGGTTTTCCATTGAA	4563	False	NA	0	True	ATTAAA	-22	NA	150517990	150495108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_150496458_150497464_150497542_150499714_150499804_150500104_150500233_150517728
transcript_75275.known	chr5	-	1371	3	FSM	ENSMUSG00000041132.12	ENSMUST00000200840.2	1371	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	1.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATATGTCTTGTCTTTCAA	4560	False	NA	NA	False	AATAAA	-17	NA	150517993	150515216	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_150516025_150516604_150516903_150517728
transcript_75285.known	chr5	-	8982	6	FSM	ENSMUSG00000029655.18	ENSMUST00000118316.8	8982	6	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_5	18.6010752377383	570	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTTGTTTCTTAATT	5437	False	NA	NA	False	AATAAA	-15	NA	150589077	150559436	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_150566781_150570465_150570543_150570924_150571014_150574079_150574205_150584743_150585979_150588965
transcript_75286.known	chr5	-	650	3	FSM	ENSMUSG00000029655.18	ENSMUST00000156180.2	650	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	124	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGTTGTTTAGATCCTAA	9562	False	NA	11	True	AATAAA	-32	NA	150584952	150566464	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_150566781_150574079_150574205_150584743
transcript_75287.nnic	chr5	+	496	3	NNC	ENSMUSG00000034021.16	novel	6598	35	NA	NA	-37	-53734	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTCTAAGCATGCATGTG	NA	False	NA	NA	False	NA	NA	NA	150597254	150618344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_+_150597419_150617894_150617969_150618086
transcript_75292.nnic	chr5	-	1410	3	Genic_Genomic	ENSMUSG00000107047.2	novel	866	4	NA	NA	-1040	-7130	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCCCCCCTTTCTCTCCCC	NA	False	NA	NA	False	NA	NA	NA	150807147	150794557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr5_-_150794665_150798972_150799086_150805957
transcript_75293.nnic	chr5	-	1400	3	Genic_Genomic	ENSMUSG00000107047.2	novel	866	4	NA	NA	-1040	-7130	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCCCCCCTTTCTCTCCCC	NA	False	NA	NA	False	NA	NA	NA	150807147	150794557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr5_-_150794665_150798972_150799120_150806001
transcript_75296.nnic	chr5	-	1396	3	NNC	ENSMUSG00000107047.2	novel	866	4	NA	NA	-1040	-7130	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCCCCCCTTTCTCTCCCC	NA	False	NA	NA	False	NA	NA	NA	150807147	150794557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr5_-_150794665_150798972_150799182_150806067
transcript_75298.known	chr5	+	924	4	FSM	ENSMUSG00000097321.6	ENSMUST00000202024.4	924	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTGCTTCTAAAATTAAAA	NA	False	NA	NA	False	AATAAA	-12	NA	151292182	151337548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_+_151292322_151303853_151303989_151331339_151331533_151337091
transcript_753.known	SIRV8002	+	8000	1	FSM	SIRV8002A	SIRV8002	8000	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	8000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV8002_+_0_8000
transcript_75300.known	chr5	-	1317	9	FSM	ENSMUSG00000033970.16	ENSMUST00000038131.10	1317	9	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_1	24.5098832106561	1097	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGAGTATTTTGCTTACA	NA	False	NA	60	True	TTTAAA	-40	NA	151574707	151566220	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_151566569_151567175_151567246_151568077_151568177_151568254_151568392_151568982_151569165_151570903_151571002_151571709_151571778_151573336_151573475_151574530
transcript_75301.known	chr5	-	2726	6	FSM	ENSMUSG00000033970.16	ENSMUST00000145106.8	2726	6	0	0	0	0	multi-exon	FALSE	canonical	3	318	junction_1	17.4539393834171	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTATCATTTGTGTTTG	NA	False	NA	-8	True	AATAAA	-15	NA	151574667	151566288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr5_-_151568392_151568982_151569165_151570903_151571002_151571709_151571778_151573336_151573475_151574530
transcript_75302.nnic	chr6	+	1936	3	Intergenic	novelGene_112	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAGAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	3183226	3192378	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr6_+_3184648_3191785_3192075_3192152
transcript_75303.known	chr6	-	5330	2	FSM	ENSMUSG00000047735.15	ENSMUST00000120087.6	5330	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTTTCTAAATTATTTC	-13	True	NA	NA	False	AATAAA	-20	NA	3399572	3372256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_3377282_3399267
transcript_75304.known	chr6	+	3788	28	FSM	ENSMUSG00000001376.18	ENSMUST00000001412.17	3788	28	0	0	0	0	multi-exon	FALSE	canonical	2	105	junction_25	21.3495308879564	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCTGTCTTTGAATTCAA	NA	False	NA	NA	False	TATAAA	-22	NA	3498381	3603531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_3498556_3504868_3504938_3516621_3516745_3517788_3517861_3519216_3519271_3520206_3520278_3522255_3522374_3522682_3522719_3524092_3524176_3532157_3532201_3533471_3533571_3536831_3536973_3545509_3545643_3551012_3551105_3554995_3555091_3555367_3555467_3562267_3562359_3565515_3565693_3567734_3567854_3571001_3571109_3578793_3578916_3588005_3588087_3592426_3592576_3594017_3594115_3594742_3594902_3598471_3598594_3600127_3600318_3602659
transcript_75310.known	chr6	+	1587	6	FSM	ENSMUSG00000001376.18	ENSMUST00000184780.8	1587	6	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_1	10.4575331699211	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTCCAGAAGCTCCAGTTC	6	True	NA	NA	False	NA	NA	NA	3498425	3521345	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_3498556_3504868_3504938_3516621_3516745_3517788_3517861_3519216_3519271_3520206
transcript_75312.nic	chr6	+	1858	5	ISM	ENSMUSG00000001376.18	ENSMUST00000184780.8	1587	6	-39	704	5	-704	intron_retention	FALSE	canonical	3	151	junction_1	11.2333209693305	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAAGAAAGAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	3498386	3520641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_3498556_3504868_3504938_3516621_3516745_3517788_3517861_3519216
transcript_75315.known	chr6	+	919	2	FSM	ENSMUSG00000032766.10	ENSMUST00000031670.10	919	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGTGACTTAAGACGGC	9869	False	NA	12	True	AATAAA	-22	NA	4003903	4008445	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_4004412_4008034
transcript_75321.known	chr6	-	1516	4	FSM	ENSMUSG00000032757.7	ENSMUST00000049166.5	1516	4	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_1	40.3016404408335	1386	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGTGTGTTCTTGGCAT	NA	False	NA	0	True	ATTAAA	-22	NA	4086972	4076898	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_4078037_4079960_4080018_4082457_4082583_4086776
transcript_75332.known	chr6	+	3961	18	FSM	ENSMUSG00000015189.13	ENSMUST00000015333.12	3961	18	0	0	0	0	multi-exon	TRUE	canonical	3	22	junction_3	9.97574914150592	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATGTGTGGTTTTTGTTT	87	False	NA	30	True	AATAAA	-41	NA	4600838	4643355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_4601302_4607982_4608080_4608633_4608755_4613234_4613280_4614648_4614712_4619288_4619334_4619760_4619885_4621071_4621287_4624051_4624475_4625465_4625556_4629961_4630082_4631007_4631165_4631518_4631599_4634001_4634104_4635745_4635887_4636968_4637047_4640914_4641008_4641851
transcript_75334.known	chr6	-	1619	12	FSM	ENSMUSG00000004631.16	ENSMUST00000133306.8	1619	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6.59576623535166	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACATCAACGACTTTATAT	9948	False	4747138	NA	False	NA	NA	NA	4747124	4674417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_4674633_4677162_4677234_4678066_4678111_4689578_4689768_4690468_4690496_4691428_4691641_4694021_4694185_4707073_4707273_4711307_4711381_4717920_4718079_4719373_4719497_4746979
transcript_75336.known	chr6	-	1696	11	FSM	ENSMUSG00000004631.16	ENSMUST00000115579.8	1696	11	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	4.92848861214064	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGGTAAAATTTCTTTC	9868	False	NA	NA	False	AATAAA	-36	NA	4747204	4674349	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_4674633_4678066_4678111_4689578_4689768_4690468_4690496_4691428_4691641_4694021_4694185_4707073_4707273_4711307_4711381_4717920_4718079_4719373_4719497_4746979
transcript_75339.nnic	chr6	-	593	3	NNC	ENSMUSG00000004631.16	novel	1696	11	NA	NA	26898	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	13	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGGTAAAATTTCTTTC	NA	False	NA	NA	False	AATAAA	-36	NA	4685130	4674349	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_4674633_4678066_4678111_4684864
transcript_75340.known	chr6	-	1522	10	FSM	ENSMUSG00000004631.16	ENSMUST00000126151.8	1522	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	7.1336448530109	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAATGTGTGGTAAAATTTC	9915	False	NA	NA	False	AATAAA	-32	NA	4747157	4674353	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_4674633_4678066_4678111_4689578_4689768_4690468_4690496_4691428_4691641_4694021_4694185_4707073_4707273_4711307_4711381_4717920_4718079_4746979
transcript_75343.known	chr6	-	1837	9	FSM	ENSMUSG00000029759.10	ENSMUST00000031773.9	1837	9	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	13.4350288425444	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATGAAAAAAAATATATG	-2	True	NA	NA	False	AATAAA	-43	NA	5256286	5220851	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_5221723_5230400_5230530_5230748_5230831_5232323_5232525_5236871_5236999_5240812_5240979_5246277_5246334_5254515_5254587_5256152
transcript_75344.known	chr6	-	921	5	FSM	ENSMUSG00000029759.10	ENSMUST00000156848.8	921	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	12.871965661856	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAATTAATAAAAATAA	70	False	NA	NA	False	TTTAAA	-12	NA	5256214	5236432	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_5236999_5240812_5240979_5246277_5246334_5254515_5254587_5256152
transcript_75345.known	chr6	-	2409	9	FSM	ENSMUSG00000032667.18	ENSMUST00000057792.9	2409	9	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_7	2.57087047515039	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCGTCTTCTCGAAGCCT	14	False	NA	NA	False	ATTAAA	-40	NA	5298455	5264146	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_5265480_5266111_5266241_5266964_5267047_5268977_5269179_5272324_5272452_5273000_5273167_5277871_5277928_5289012_5289084_5298211
transcript_75346.nic	chr6	-	938	7	NIC	ENSMUSG00000032667.18	novel	2409	9	NA	NA	-46	1253	combination_of_known_junctions	FALSE	canonical	2	4	junction_5	3.77123616632825	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTTTGGTTTTACTATAC	93	False	5298402	NA	False	AATAAA	-19	NA	5298376	5268919	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_5269179_5272324_5272452_5273000_5273167_5277871_5277928_5278718_5278813_5289012_5289084_5298211
transcript_75348.known	chr6	+	3286	6	FSM	ENSMUSG00000042607.16	ENSMUST00000043294.12	3286	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.68781778291716	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGGCGTTTCCTTTCAT	99	False	NA	NA	False	AATAAA	-25	NA	5383385	5433022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_5383406_5390598_5390796_5398223_5398524_5423341_5423833_5429739_5429854_5430858
transcript_75350.known	chr6	-	3484	11	FSM	ENSMUSG00000019577.7	ENSMUST00000019721.7	3484	11	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_7	4.42831796509691	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTGGTCTTATAAAATTC	-3	True	NA	NA	False	AATAAA	-19	NA	5496309	5483350	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_5485593_5486677_5486792_5487063_5487175_5487378_5487478_5489134_5489212_5491069_5491148_5491590_5491678_5491829_5492015_5492705_5492778_5494889_5495032_5496032
transcript_75352.known	chr6	-	412	2	FSM	ENSMUSG00000019577.7	ENSMUST00000134068.2	412	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTTTAAAAGTTACCTGAG	31	False	NA	NA	False	NA	NA	NA	5496275	5494862	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_5495032_5496032
transcript_75353.known	chr6	+	2518	16	FSM	ENSMUSG00000029757.17	ENSMUST00000115554.4	2518	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.4360439485692	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAGGACTCTATTTTCTC	42	False	NA	12	True	AATAAA	-23	NA	5725811	6028039	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_5725937_5757377_5757495_5767029_5767145_5769700_5769792_5800774_5800891_5905104_5905195_5913315_5913479_5915829_5915930_5923164_5923291_5961840_5961988_5966702_5966817_5969373_5969508_5972064_5972210_6006269_6006411_6010454_6010581_6027371
transcript_75354.known	chr6	-	503	3	FSM	ENSMUSG00000085416.2	ENSMUST00000130004.2	503	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTGGCAACAGGTTTTG	9	False	NA	NA	False	AATAAA	-5	NA	5977393	5963908	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_5964172_5969129_5969268_5977291
transcript_75365.known	chr6	-	3121	18	FSM	ENSMUSG00000015112.16	ENSMUST00000188414.4	3121	18	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_9	125.074538329783	450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGATTGCTTGCTCTTGTG	NA	False	NA	-4	True	AATAAA	-15	NA	6217173	6041218	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110025_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
transcript_75368.nnic	chr6	-	2967	17	NIC	ENSMUSG00000015112.16	novel	3067	18	NA	NA	12	0	combination_of_known_splicesites	FALSE	canonical	3	53	junction_15	193.208396233187	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTGCTTGCTCTTGTGT	NA	False	NA	-3	True	AATAAA	-16	NA	6217161	6041217	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110025_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6191263_6191318_6216995
transcript_75376.nic	chr6	-	2313	15	NIC	ENSMUSG00000015112.16	novel	616	4	NA	NA	-92	170	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	212.439631280925	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATGTGTTATTGTTTATG	NA	False	NA	-2	True	AATAAA	-21	NA	6217265	6068096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_6068700_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110025_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
transcript_75389.nic	chr6	-	1605	11	ISM	ENSMUSG00000015112.16	ENSMUST00000188414.4	3121	18	0	67700	0	6069	5prime_fragment	FALSE	canonical	3	190	junction_2	147.487084180277	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTTTAGTGAGTTTTTG	NA	False	NA	NA	False	AATAAA	-14	NA	6217173	6108918	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_6109340_6109936_6110025_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
transcript_75397.nic	chr6	-	963	6	ISM	ENSMUSG00000015112.16	ENSMUST00000188414.4	3121	18	-92	75787	-92	-2018	5prime_fragment	FALSE	canonical	3	590	junction_1	45.2972405340546	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACGTGATCATGTATATTA	NA	False	NA	NA	False	AATAAA	-23	NA	6217265	6117005	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
transcript_75402.nic	chr6	-	873	5	ISM	ENSMUSG00000015112.16	ENSMUST00000188414.4	3121	18	0	90168	0	81	5prime_fragment	FALSE	canonical	3	691	junction_4	11.0792599030802	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGTC	NA	False	NA	NA	False	NA	NA	NA	6217173	6131386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
transcript_75403.nic	chr6	-	685	5	ISM	ENSMUSG00000015112.16	ENSMUST00000188414.4	3121	18	-92	90448	-92	-199	5prime_fragment	FALSE	canonical	3	691	junction_4	11.0792599030802	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCACCTTACATATGCGGAG	NA	False	NA	NA	False	AAGAAA	-7	NA	6217265	6131666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
transcript_75432.known	chr6	-	1472	3	FSM	ENSMUSG00000042541.11	ENSMUST00000041111.10	1472	3	0	0	0	0	multi-exon	FALSE	canonical	3	3186	junction_2	110.5	12587	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATACAAAGTTATATCAAA	-25	True	NA	NA	False	AATAAA	-17	NA	6578658	6557293	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_6558492_6560407_6560502_6578478
transcript_75439.known	chr6	+	4323	2	FSM	ENSMUSG00000042505.7	ENSMUST00000040826.6	4323	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	891	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAACGATCACAGCTGATG	-18	True	NA	NA	False	AATAAA	-20	NA	6956003	7042979	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_6956201_7038853
transcript_75440.known	chr6	+	691	6	FSM	ENSMUSG00000061762.13	ENSMUST00000184986.2	691	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.4	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAAGAAAGGACCCTTCTG	35	False	NA	NA	False	NA	NA	NA	7555095	7562700	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_7555162_7555604_7555737_7556683_7556781_7557719_7557744_7559098_7559153_7562382
transcript_75453.known	chr6	-	2016	12	FSM	ENSMUSG00000029752.13	ENSMUST00000115542.8	2016	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	2480.9262599759	3628	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCCTGGTTGTGGGTAC	14	True	NA	-9	True	AATAAA	-17	NA	7692871	7675168	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7692710
transcript_75464.known	chr6	-	2001	12	FSM	ENSMUSG00000029752.13	ENSMUST00000031766.12	2001	12	0	0	0	0	multi-exon	FALSE	canonical	3	8132	junction_7	319.487761505924	16953	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCCTGGTTGTGGGTAC	1567	False	NA	-9	True	AATAAA	-17	NA	7693254	7675168	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108
transcript_75465.known	chr6	+	6092	4	FSM	ENSMUSG00000042460.6	ENSMUST00000040159.6	6092	4	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	4.89897948556636	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTCATCTGTGTATTTT	9	True	NA	16	True	AATAAA	-17	NA	7844841	7875687	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_7845395_7863904_7864142_7866375_7867044_7871053
transcript_75467.known	chr6	+	3710	12	FSM	ENSMUSG00000042447.14	ENSMUST00000040017.8	3710	12	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_5	31.0917065288484	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGAAACTTTTTTCTTTT	-18	True	NA	NA	False	AATAAA	-24	NA	8209221	8236274	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_8209412_8211579_8211639_8214765_8216100_8216371_8216471_8222460_8222716_8224554_8224725_8226843_8226910_8227968_8228128_8231160_8231314_8233049_8233255_8234231_8234362_8235384
transcript_75478.known	chr6	-	670	4	FSM	ENSMUSG00000012483.5	ENSMUST00000012627.5	670	4	0	0	0	0	multi-exon	FALSE	canonical	3	1410	junction_2	59.4474557908074	10014	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTGGTCAATTGTTTT	NA	False	NA	-11	True	AATAAA	-14	NA	8259173	8255935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_8256248_8256694_8256804_8257686_8257762_8258999
transcript_75479.nnic	chr6	+	1295	6	NNC	ENSMUSG00000089862.9	novel	2615	5	NA	NA	-13	10295	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	11.443775600736	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTTTTGAGACTTTCT	2	True	NA	NA	False	AATATA	-15	NA	8259336	8289847	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_8259494_8270472_8270582_8283220_8283395_8284664_8284843_8286449_8286651_8289371
transcript_75486.known	chr6	+	2025	4	FSM	ENSMUSG00000089862.9	ENSMUST00000159433.8	2025	4	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_2	5.43650214343336	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAAATGGCTTTCATTGC	10	True	NA	NA	False	AATAAA	-22	NA	8259429	8428760	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_8259494_8270472_8270582_8373905_8373968_8426970
transcript_75490.known	chr6	-	2075	14	FSM	ENSMUSG00000062995.13	ENSMUST00000038403.12	2075	14	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	7.8401183423021	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATTCACTCCTGTTTGGT	-6	True	NA	-1	True	AATAAA	-35	NA	8778484	8630526	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_8630798_8643972_8644243_8653496_8653536_8653629_8653693_8656361_8656409_8658219_8658315_8670693_8670793_8672297_8672424_8737016_8737216_8742254_8742379_8749694_8749768_8754588_8754752_8758365_8758459_8778071
transcript_75491.nnic	chr6	-	1717	13	NIC	ENSMUSG00000062995.13	novel	2075	14	NA	NA	-65	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_12	19.7798649023586	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATTCACTCCTGTTTGGT	2	True	NA	-1	True	AATAAA	-35	NA	8778219	8630526	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_8630798_8643972_8644243_8653496_8653536_8653629_8653693_8656361_8656409_8658219_8658315_8670693_8670793_8672297_8672424_8737016_8737216_8742254_8742379_8749694_8749768_8754588_8754752_8778071
transcript_75498.known	chr6	-	452	5	FSM	ENSMUSG00000029632.8	ENSMUST00000204714.2	452	5	0	0	0	0	multi-exon	FALSE	canonical	3	1509	junction_4	3332.42722163591	600	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATGCGTGTCACTATTTA	NA	False	NA	-15	True	AATAAA	-11	NA	11907496	11900374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_11900591_11905200_11905262_11906018_11906108_11907322_11907384_11907471
transcript_75502.known	chr6	-	468	4	FSM	ENSMUSG00000029632.8	ENSMUST00000031637.8	468	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4249.68315158776	771	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCGTGTCACTATTTAATG	2	True	NA	-12	True	AATAAA	-14	NA	11907449	11900371	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_11900591_11905200_11905262_11906018_11906080_11907322
transcript_75508.known	chr6	-	610	4	FSM	ENSMUSG00000029632.8	ENSMUST00000204978.3	610	4	0	0	0	0	multi-exon	FALSE	canonical	3	8511	junction_2	453.262494465281	14989	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCTTGAATTTCTCTTA	-31	True	NA	69	True	ACTAAA	-17	NA	11907482	11900290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_11900591_11905200_11905262_11906018_11906108_11907322
transcript_75509.known	chr6	-	1232	3	FSM	ENSMUSG00000029632.8	ENSMUST00000203801.2	1232	3	0	0	0	0	multi-exon	FALSE	canonical	3	9446	junction_1	25.5	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCGTGTCACTATTTAATG	23	True	NA	-12	True	AATAAA	-14	NA	11907428	11900371	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_11900591_11905200_11906108_11907322
transcript_75511.known	chr6	+	3336	18	FSM	ENSMUSG00000029629.18	ENSMUST00000115511.9	3336	18	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	28.335117658721	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAAATTCATATTTTTTT	9	True	NA	12	True	AATAAA	-23	NA	11925914	12081204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_11926292_11926725_11926837_11933251_11934019_11941428_11941574_11953286_11953447_11961548_11961661_11962650_11962789_11986340_11986488_11987002_11987274_11987574_11987682_11988720_11988817_11990027_11990132_11991984_11992117_11997024_11997194_12006809_12006861_12006983_12007106_12047825_12047944_12080995
transcript_75513.known	chr6	+	478	3	FSM	ENSMUSG00000029629.18	ENSMUST00000155037.4	478	3	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	44	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAGACAAACAGTTAATTAA	35	False	NA	NA	False	AGTAAA	-41	NA	11907807	11933409	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_11908017_11926725_11926837_11933251
transcript_75514.nic	chr6	+	536	3	ISM	ENSMUSG00000029629.18	ENSMUST00000115510.8	3353	17	216	74532	181	71	5prime_fragment	FALSE	canonical	3	71	junction_1	42	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAGAAAGAAAAGGAGAAAG	132	False	NA	NA	False	NA	NA	NA	11926095	11933480	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_11926292_11926725_11926837_11933251
transcript_75518.known	chr6	+	6002	9	FSM	ENSMUSG00000029571.15	ENSMUST00000031556.14	6002	9	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	9.57127865021179	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGGTCATCCTCTTGAAA	25	True	NA	18	True	AATAAA	-19	NA	13069837	13089268	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_13069960_13070306_13070414_13071740_13071963_13075034_13075099_13078090_13078251_13081538_13081680_13082411_13082462_13083367_13083422_13084186
transcript_75521.known	chr6	+	983	5	FSM	ENSMUSG00000029571.15	ENSMUST00000142798.2	983	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	46.267564232408	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAACTATT	40	True	NA	NA	False	NA	NA	NA	13069852	13076369	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_13069960_13070306_13070414_13071740_13071963_13075034_13075099_13075886
transcript_75522.known	chr6	-	4587	5	FSM	ENSMUSG00000029569.10	ENSMUST00000031554.9	4587	5	0	0	0	0	multi-exon	TRUE	canonical	3	155	junction_4	32.9194091684526	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTGTGTCTCAGACTCAG	NA	False	NA	NA	False	AATAAA	-26	NA	13608099	13580685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_13583334_13591268_13591544_13594942_13595086_13602236_13603487_13607828
transcript_75526.known	chr6	-	3337	4	FSM	ENSMUSG00000029569.10	ENSMUST00000149123.3	3337	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	103.721850264167	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTGTGTCTCAGACTCAG	NA	False	NA	NA	False	AATAAA	-26	NA	13608099	13580685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_13583334_13591268_13591544_13594942_13595086_13607828
transcript_75527.known	chr6	-	326	2	FSM	ENSMUSG00000029569.10	ENSMUST00000138637.2	326	2	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTGAATTAAGTGAAGGTT	4	True	NA	NA	False	AAGAAA	-3	NA	13608026	13607286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_13607415_13607828
transcript_75528.known	chr6	-	767	2	FSM	ENSMUSG00000052419.8	ENSMUST00000185361.2	767	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTTTTTATCTCGCAAGT	1	True	NA	NA	False	NA	NA	NA	13871464	13869999	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_13870740_13871437
transcript_75530.known	chr6	-	1606	1	FSM	ENSMUSG00000052419.8	ENSMUST00000185219.2	1606	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTATCTTCTCCTTGTGAG	1	True	NA	NA	False	AATAGA	-32	NA	13871464	13869858	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_13869900_13871500
transcript_75531.known	chr6	-	1077	3	FSM	ENSMUSG00000052419.8	ENSMUST00000155856.2	1077	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	53.5	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTATTGTTTTGGTCTGCT	0	True	NA	NA	False	AATACA	-22	NA	13871465	13869798	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_13870740_13871054_13871163_13871437
transcript_75535.known	chr6	+	1499	3	FSM	ENSMUSG00000097616.8	ENSMUST00000181225.2	1499	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	3.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACTGTTATGGATGATAG	28	False	NA	NA	False	AATAAA	-22	NA	13871567	13896421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_13871627_13881271_13881381_13895090
transcript_75538.known	chr6	+	403	3	FSM	ENSMUSG00000097616.8	ENSMUST00000181090.8	403	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	8	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAACATTTCCTACTATAA	-15	True	NA	NA	False	NA	NA	NA	13871524	14044384	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_13871627_13881271_13881381_14044192
transcript_75540.known	chr6	+	2440	7	FSM	ENSMUSG00000029552.20	ENSMUST00000115467.11	2440	7	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	5.93717104351896	143	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAATTGTCTTTCTATGTC	-34	True	NA	NA	False	AATAAA	-15	NA	17065147	17105822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_17065313_17086135_17086222_17096126_17096380_17097259_17097590_17099702_17099919_17100280_17100440_17104591
transcript_75556.known	chr6	+	1046	10	FSM	ENSMUSG00000015733.14	ENSMUST00000130606.8	1046	10	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_6	571.076371619613	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGTTCCATTTCCTTTG	19	True	NA	NA	False	NA	NA	NA	17637108	17665587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_17637160_17648518_17648583_17650001_17650054_17654104_17654169_17656236_17656444_17657171_17657252_17660727_17660827_17662096_17662169_17665049_17665113_17665293
transcript_75564.known	chr6	+	2537	10	FSM	ENSMUSG00000015733.14	ENSMUST00000015877.14	2537	10	0	0	0	0	multi-exon	FALSE	canonical	3	1705	junction_7	87.4846018197234	2887	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGTAAGTTGTGTGAATT	1217	False	NA	NA	False	AGTAAA	-19	NA	17636981	17666971	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_17637160_17648518_17648583_17650001_17650054_17654104_17654169_17656236_17656444_17657171_17657252_17660747_17660827_17662096_17662169_17665049_17665113_17665293
transcript_75593.known	chr6	+	3678	5	FSM	ENSMUSG00000015733.14	ENSMUST00000156701.8	3678	5	0	0	0	0	multi-exon	FALSE	canonical	3	1738	junction_4	95.5628065724317	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAATAGAATAAAAACA	-4	True	NA	NA	False	AAAAAG	-19	NA	17637033	17659608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_17637160_17648518_17648583_17650001_17650054_17654104_17654169_17656236
transcript_75595.known	chr6	+	358	4	FSM	ENSMUSG00000015733.14	ENSMUST00000136771.6	358	4	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	814.256443361399	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTGCGAGCTTATGTAAAA	3	True	NA	NA	False	NA	NA	NA	17637040	17656396	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_17637160_17650038_17650054_17654104_17654169_17656236
transcript_75598.known	chr6	-	1736	13	FSM	ENSMUSG00000010796.12	ENSMUST00000010940.11	1736	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	5.42307313450798	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAACTGTGCTCATTTGTC	-6	True	NA	NA	False	AATAAA	-24	NA	18109056	18050962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_18051403_18054526_18054641_18055433_18055540_18071963_18072074_18073760_18073818_18074824_18074901_18075759_18075885_18076503_18076639_18077151_18077264_18103498_18103611_18104774_18104898_18108401_18108502_18108930
transcript_75605.known	chr6	+	807	4	FSM	ENSMUSG00000044155.12	ENSMUST00000056398.11	807	4	0	0	0	0	multi-exon	FALSE	canonical	3	968	junction_1	14.522013940528	10555	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTTTCTTTTCTTTCCT	1	True	NA	17	True	AATAAA	-17	NA	18848577	18854052	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_18848763_18849624_18849666_18851634_18851763_18853599
transcript_75607.known	chr6	+	3800	12	FSM	ENSMUSG00000029670.13	ENSMUST00000031680.10	3800	12	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	20.5043837280255	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAAGCTGAGTGTTCGAT	NA	False	NA	NA	False	NA	NA	NA	21949569	21976037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_21949793_21950036_21950109_21952127_21952229_21953761_21953828_21965732_21965830_21967625_21967698_21968883_21969004_21969276_21969435_21969912_21970107_21971105_21971308_21971809_21971849_21973581
transcript_75610.known	chr6	+	2546	12	FSM	ENSMUSG00000029670.13	ENSMUST00000115389.8	2546	12	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_6	46.7513203066312	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCGTGATGTGGCAGTTA	-3	True	NA	22	True	AATATA	-21	NA	21949655	21974902	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_21949793_21950036_21950109_21952127_21952229_21953761_21953828_21965732_21965830_21967625_21967698_21968916_21969004_21969276_21969435_21969912_21970107_21971105_21971308_21971809_21971849_21973581
transcript_75614.nic	chr6	+	2136	11	ISM	ENSMUSG00000029670.13	ENSMUST00000031680.10	3800	12	400	1508	-49	0	3prime_fragment	FALSE	canonical	3	141	junction_5	14.2562267097574	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATAACTTGTATTTAT	311	False	NA	8	True	AATAAA	-8	NA	21949969	21974529	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_21950109_21952127_21952229_21953761_21953828_21965732_21965830_21967625_21967698_21968883_21969004_21969276_21969435_21969912_21970107_21971105_21971308_21971809_21971849_21973581
transcript_75615.nic	chr6	+	2509	11	ISM	ENSMUSG00000029670.13	ENSMUST00000031680.10	3800	12	400	1135	-49	0	3prime_fragment	FALSE	canonical	3	141	junction_5	14.2562267097574	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCGTGATGTGGCAGTTA	311	False	NA	22	True	AATATA	-21	NA	21949969	21974902	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_21950109_21952127_21952229_21953761_21953828_21965732_21965830_21967625_21967698_21968883_21969004_21969276_21969435_21969912_21970107_21971105_21971308_21971809_21971849_21973581
transcript_75618.known	chr6	+	399	5	FSM	ENSMUSG00000029670.13	ENSMUST00000149728.7	399	5	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_4	5.58457697592217	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCTCATTCACATACTCCC	-7	True	NA	NA	False	NA	NA	NA	21950018	21967670	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_21950109_21952127_21952229_21953761_21953828_21965732_21965830_21967625
transcript_75620.known	chr6	+	1168	4	FSM	ENSMUSG00000029671.16	ENSMUST00000148639.2	1168	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATCAAGTACGTGATTTGT	57	False	NA	NA	False	AGTAAA	-23	NA	22288286	22294584	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_22288601_22288779_22289028_22290916_22291204_22294265
transcript_75624.known	chr6	-	2826	10	FSM	ENSMUSG00000029672.17	ENSMUST00000165576.8	2826	10	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_3	15.4416464292006	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTAGTAGTTGCAGTGAT	18	False	22356183	0	True	ATTAAA	-22	NA	22356165	22306518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_22308538_22309325_22309453_22318932_22319018_22321327_22321379_22322288_22322348_22328553_22328678_22329577_22329608_22339271_22339377_22343264_22343319_22355993
transcript_75626.known	chr6	-	1487	9	FSM	ENSMUSG00000029672.17	ENSMUST00000081288.14	1487	9	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_8	138.299493853015	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCAGATTTGTGAAAAGCA	NA	False	NA	-21	True	AATAAA	-21	NA	22356242	22307880	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_22308538_22309325_22309453_22318932_22319018_22321327_22321379_22322288_22322348_22328553_22328678_22329577_22329608_22339271_22339377_22355993
transcript_75631.nnic	chr6	-	1475	7	NNC	ENSMUSG00000029695.14	novel	3701	24	NA	NA	42310	-327	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_6	2.92498812913071	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCTTGAGTTTTTGGAA	NA	False	NA	NA	False	AGTAAA	-20	NA	23085269	23072498	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_23073090_23074526_23074704_23075160_23075250_23075739_23075856_23077077_23077174_23078826_23078995_23085031
transcript_75643.known	chr6	-	453	5	FSM	ENSMUSG00000023089.13	ENSMUST00000141274.2	453	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_4	1535.46725380257	3386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGTGTCCATGTTATT	504	False	NA	-32	True	ATTAAA	-26	NA	24527525	24518665	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_24518824_24519190_24519257_24522657_24522775_24527271_24527317_24527458
transcript_75646.known	chr6	-	315	4	FSM	ENSMUSG00000023089.13	ENSMUST00000118558.5	315	4	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_2	1436.47492920072	1092	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTGTCCATGTTATTG	-4	True	NA	-31	True	ATTAAA	-27	NA	24527569	24518664	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_24518824_24519190_24519257_24527271_24527317_24527524
transcript_75647.known	chr6	-	4352	11	FSM	ENSMUSG00000029684.15	ENSMUST00000031695.15	4352	11	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_7	20.1893536300695	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGTGTCTCATTTGTTAT	-9	True	NA	NA	False	AATAAA	-27	NA	24665008	24613803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_24616346_24618271_24618381_24619183_24619702_24624234_24624389_24625052_24625096_24626692_24626862_24629923_24629948_24633835_24633933_24634570_24634658_24637647_24637783_24664534
transcript_75650.nic	chr6	-	1020	6	ISM	ENSMUSG00000029684.15	ENSMUST00000031695.15	4352	11	-92	12947	-92	-89	5prime_fragment	FALSE	canonical	3	160	junction_2	27.1484806204694	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAGCTAAAAAGAAGAGA	NA	False	NA	NA	False	AAGAAA	-10	NA	24665100	24626750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_24626862_24629923_24629948_24633835_24633933_24634570_24634658_24637647_24637783_24664534
transcript_75651.known	chr6	-	1298	5	FSM	ENSMUSG00000029684.15	ENSMUST00000041737.8	1298	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	91.9524333555127	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTTGAATTATTAATAGC	12	True	NA	NA	False	AATAAA	-17	NA	24664987	24632683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_24633210_24633835_24633933_24634570_24634658_24637647_24637783_24664534
transcript_75653.known	chr6	-	3151	18	FSM	ENSMUSG00000029676.16	ENSMUST00000115330.8	3151	18	0	0	0	0	multi-exon	TRUE	canonical	3	94	junction_8	16.939542404853	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACATCTTCCAGATACTT	0	True	NA	NA	False	AATATA	-22	NA	25809225	25743735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_25744693_25745889_25745996_25748289_25748382_25750048_25750138_25752358_25752495_25753147_25753354_25756161_25756319_25757223_25757287_25758816_25758903_25764250_25764424_25771517_25771674_25775523_25775815_25778837_25778969_25794558_25794674_25798007_25798055_25800282_25800510_25805873_25805941_25809173
transcript_75661.known	chr6	-	2447	10	FSM	ENSMUSG00000029676.16	ENSMUST00000115327.8	2447	10	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_5	7.93025150224688	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATTACCACCAACA	4	True	NA	NA	False	AAAACA	-21	NA	25809194	25757683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_25758903_25764250_25764424_25771517_25771674_25775523_25775815_25778837_25778969_25794558_25794674_25798007_25798055_25800282_25800510_25805873_25805941_25809173
transcript_75664.known	chr6	-	703	5	FSM	ENSMUSG00000039841.15	ENSMUST00000155494.2	703	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	12.1937483982572	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTACACCTGAACAAACTGA	-6	True	NA	NA	False	AATATA	-42	NA	28261931	28244483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_28244663_28247139_28247284_28256429_28256526_28260716_28260836_28261766
transcript_75666.known	chr6	+	1116	6	FSM	ENSMUSG00000020440.14	ENSMUST00000020717.12	1116	6	0	0	0	0	multi-exon	FALSE	canonical	3	1725	junction_4	143.712769091685	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGGTGTTGTCTGTTGCCT	-31	True	NA	17	True	AATAAA	-17	NA	28423558	28426601	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_28423755_28424288_28424370_28424720_28424831_28425171_28425244_28425737_28425864_28426070
transcript_75667.nnic	chr6	+	1005	6	NNC	ENSMUSG00000020440.14	novel	1116	6	NA	NA	-1810	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	787.134956662452	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGGTGTTGTCTGTTGCCT	NA	False	NA	17	True	AATAAA	-17	NA	28421748	28426601	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_28421834_28424288_28424370_28424720_28424831_28425171_28425244_28425737_28425864_28426070
transcript_75671.known	chr6	+	3482	24	FSM	ENSMUSG00000001424.15	ENSMUST00000001460.14	3482	24	0	0	0	0	multi-exon	FALSE	canonical	3	582	junction_3	55.1049865830108	174	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTGGAGCCAGAACACTG	-7	True	NA	30	True	AATAAA	-31	NA	28480346	28888831	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_28480642_28512833_28512984_28520143_28520265_28523725_28523805_28526051_28526213_28526907_28527000_28527575_28527735_28528911_28529019_28531407_28531499_28545483_28545598_28626098_28626189_28668556_28668658_28707032_28707144_28724907_28724981_28745183_28745326_28795827_28795938_28874859_28875049_28880195_28880338_28883256_28883381_28884186_28884257_28884954_28885069_28886412_28886617_28888077_28888123_28888233
transcript_75674.known	chr6	-	4465	19	FSM	ENSMUSG00000029701.16	ENSMUST00000007993.16	4465	19	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_12	24.6131175505167	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTCTTGGTCATG	0	True	NA	-4	True	NA	NA	NA	29165005	29123574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_29125524_29127796_29127900_29128427_29128685_29131265_29131341_29131625_29131776_29135406_29135566_29137577_29137643_29138501_29138638_29139551_29139626_29143552_29143663_29152280_29152354_29154752_29154893_29155025_29155189_29157066_29157139_29158168_29158262_29158845_29158922_29159654_29159750_29160035_29160195_29164489
transcript_75680.nnic	chr6	-	1223	6	NNC	ENSMUSG00000029701.16	novel	1923	12	NA	NA	-878	124	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	97.6565409995664	202	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACCTTTTTAACATTTTT	NA	False	NA	-19	True	AATATA	-29	NA	29132179	29125016	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_29125524_29127796_29127900_29128427_29128685_29131265_29131341_29131625_29131776_29132048
transcript_75685.known	chr6	-	2600	15	FSM	ENSMUSG00000003500.14	ENSMUST00000159124.8	2600	15	0	0	0	0	multi-exon	FALSE	canonical	1	64	junction_14	59.8544152123146	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTGATCCTGTTTCTGT	NA	False	NA	-1	True	AATAAA	-19	NA	29216363	29200435	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_29201219_29202445_29202530_29202664_29202809_29203100_29203246_29203347_29203492_29204277_29204374_29204567_29204659_29205049_29205250_29206064_29206153_29206304_29206512_29206921_29206997_29207093_29207196_29209218_29209268_29212067_29212167_29216070
transcript_75686.known	chr6	-	2580	15	FSM	ENSMUSG00000003500.14	ENSMUST00000162099.8	2580	15	0	0	0	0	multi-exon	FALSE	canonical	1	42	junction_14	63.7043554080817	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTGATCCTGTTTCTG	7	False	NA	-2	True	AATAAA	-18	NA	29216341	29200436	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_29201219_29202445_29202530_29202664_29202809_29203100_29203246_29203347_29203492_29204277_29204374_29204567_29204659_29205049_29205250_29206064_29206153_29206304_29206512_29206921_29206997_29207093_29207196_29209218_29209268_29212067_29212170_29216070
transcript_75687.known	chr6	-	2437	14	FSM	ENSMUSG00000003500.14	ENSMUST00000078155.12	2437	14	0	0	0	0	multi-exon	FALSE	canonical	1	70	junction_10	46.9877234375763	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTGATCCTGTTTCTGT	8	True	NA	-1	True	AATAAA	-19	NA	29212296	29200435	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_29201219_29202445_29202530_29202664_29202809_29203100_29203246_29203347_29203492_29204277_29204374_29204567_29204659_29205049_29205250_29206064_29206153_29206304_29206512_29206921_29206997_29207093_29207196_29209218_29209268_29212067
transcript_75688.known	chr6	-	2314	13	FSM	ENSMUSG00000003500.14	ENSMUST00000160878.8	2314	13	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_10	66.32762747654	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTGATCCTGTTTCTGT	17	True	NA	-1	True	AATAAA	-19	NA	29212248	29200435	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_29201219_29202445_29202530_29202664_29202809_29203100_29203246_29203347_29203492_29204277_29204374_29204567_29204659_29205049_29205250_29206064_29206153_29206304_29206512_29207093_29207196_29209218_29209268_29212067
transcript_7569.known	chr10	+	1455	3	FSM	ENSMUSG00000020070.19	ENSMUST00000148259.2	1455	3	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	6.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	62816001	62826072	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_62816112_62818449_62818624_62824901
transcript_75691.known	chr6	+	982	2	FSM	ENSMUSG00000043421.9	ENSMUST00000054445.9	982	2	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_1	0	1157	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTGTCCTGTTGACATG	1	True	NA	14	True	AATAAA	-21	NA	29272624	29275445	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_29272810_29274648
transcript_75692.known	chr6	+	3229	7	FSM	ENSMUSG00000029767.17	ENSMUST00000031779.17	3229	7	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_2	154.523730647863	983	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATGTGTCTTTTATTCTC	NA	False	NA	118	True	AATAAA	-22	NA	29348104	29376674	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_29348208_29356469_29356697_29361292_29361487_29366038_29366206_29366915_29366977_29372469_29372670_29374397
transcript_75696.known	chr6	+	703	2	FSM	ENSMUSG00000004285.13	ENSMUST00000004396.13	703	2	0	0	0	0	multi-exon	FALSE	canonical	3	1924	junction_1	0	19069	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTACTGGTATGGATACG	NA	False	NA	37	True	ATTAAA	-19	NA	29467716	29470511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_29467974_29470065
transcript_75698.known	chr6	+	806	3	FSM	ENSMUSG00000004285.13	ENSMUST00000149646.3	806	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTACTGGTATGGATACG	275	False	NA	37	True	ATTAAA	-19	NA	29468066	29470511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_29468167_29468965_29469226_29470065
transcript_7570.known	chr10	-	2213	10	FSM	ENSMUSG00000020069.17	ENSMUST00000020263.14	2213	10	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_6	80.8621750760186	768	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTCTGTCCTAGAATAT	5781	False	NA	-15	True	AATAAA	-15	NA	62859673	62850442	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853819_62854005_62854538_62854678_62855171_62855307_62859498
transcript_75700.known	chr6	+	546	2	FSM	ENSMUSG00000004285.13	ENSMUST00000143101.4	546	2	0	0	0	0	multi-exon	FALSE	canonical	2	23	junction_1	0	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTACTGGTATGGATACG	275	False	NA	37	True	ATTAAA	-19	NA	29468066	29470511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_29468167_29470065
transcript_75701.known	chr6	-	2742	12	FSM	ENSMUSG00000059022.16	ENSMUST00000159482.9	2742	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.15708382375981	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTGGACTACAGGAAAATC	NA	False	NA	NA	False	AATAAA	-16	NA	29484093	29473160	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_29473780_29473852_29473945_29474089_29474180_29474268_29475121_29475395_29475455_29476692_29476851_29477057_29477126_29477869_29478026_29478105_29478165_29478263_29478381_29482632_29482940_29483928
transcript_75703.known	chr6	-	3590	24	FSM	ENSMUSG00000012535.15	ENSMUST00000170350.8	3590	24	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_23	180.197874854504	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTAAAAAGGAAAGCTGA	31	False	NA	NA	False	AAAAAG	-9	NA	29609810	29541569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29599538_29599698_29609364
transcript_75704.known	chr6	-	3989	23	FSM	ENSMUSG00000012535.15	ENSMUST00000115251.8	3989	23	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	140.778774050425	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTGTTTTTATTTCCC	235	False	NA	-2	True	TTTAAA	-5	NA	29609606	29540825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554980_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
transcript_75709.known	chr6	+	2189	9	FSM	ENSMUSG00000029771.13	ENSMUST00000004392.12	2189	9	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_7	3.25720355519885	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTCTGCCCATTTATTGAC	499	False	NA	NA	False	AATAAA	-12	NA	29526623	29537318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_29526774_29531124_29531331_29533950_29534141_29534533_29534593_29535039_29535074_29535251_29535510_29535723_29536117_29536202_29536322_29536538
transcript_7571.known	chr10	-	2168	10	FSM	ENSMUSG00000020069.17	ENSMUST00000118898.8	2168	10	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_6	104.074166337115	768	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTCTGTCCTAGAATAT	5781	False	NA	-15	True	AATAAA	-15	NA	62859673	62850442	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853864_62854005_62854538_62854678_62855171_62855307_62859498
transcript_75710.nnic	chr6	-	1058	2	NNC	ENSMUSG00000012535.15	novel	3989	23	NA	NA	-11	-13230	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGATGAAATAAAGT	12	True	NA	NA	False	NA	NA	NA	29609829	29602316	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_29602910_29609364
transcript_75711.known	chr6	+	2146	1	FSM	ENSMUSG00000029772.18	ENSMUST00000201282.2	2146	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAGGCCAGTACCCCAGA	-11	True	NA	NA	False	AATAGA	-42	NA	29768496	29770642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_29768500_29770600
transcript_75712.known	chr6	+	1003	2	FSM	ENSMUSG00000045709.12	ENSMUST00000141679.3	1003	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTGCTTAGCAGTCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	29985233	29993777	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_29985466_29993006
transcript_75714.known	chr6	+	1879	12	FSM	ENSMUSG00000058440.15	ENSMUST00000115206.8	1879	12	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_11	119.561388499108	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTATGGTTTGGGCTTTGG	15	True	NA	7	True	AATAAA	-23	NA	30048029	30144859	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_30048113_30088831_30088988_30089910_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30144579
transcript_75715.known	chr6	+	3584	12	FSM	ENSMUSG00000058440.15	ENSMUST00000115212.8	3584	12	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_11	130.142642658033	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGTGCCCCTCTCTCTA	-28	True	NA	NA	False	AATAAA	-18	NA	30047986	30153457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_30048113_30088831_30088988_30089913_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30151512
transcript_75716.known	chr6	+	1253	5	FSM	ENSMUSG00000058440.15	ENSMUST00000132866.2	1253	5	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_4	120.692791831161	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGTTGTCTCTGTGTAAT	NA	False	NA	NA	False	NA	NA	NA	30116113	30140903	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30140214
transcript_75717.known	chr6	+	3295	12	FSM	ENSMUSG00000058440.15	ENSMUST00000115211.8	3295	12	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_11	122.448774919714	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGTATGTTCTTTTCT	-14	True	NA	69	True	TATAAA	-12	NA	30048000	30153179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_30048113_30088831_30088988_30089910_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30151512
transcript_75719.nnic	chr6	-	1018	2	Antisense	novelGene_ENSMUSG00000103108.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTCCTTGTCTTCTTGAA	1575	False	NA	NA	False	AAGAAA	-17	NA	30174159	30169929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr6_-_30170467_30173678
transcript_7572.known	chr10	-	682	3	FSM	ENSMUSG00000020069.17	ENSMUST00000119814.3	682	3	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	86.5	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGATGAGACTTGGTTTT	5828	False	NA	NA	False	AATAAA	-34	NA	62859626	62853585	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_62854005_62855171_62855307_62859498
transcript_75721.known	chr6	-	4657	7	FSM	ENSMUSG00000039159.17	ENSMUST00000102993.10	4657	7	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_3	56.6345497220753	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTGAACTTGATCTATCA	3	True	NA	-2	True	AATAAA	-22	NA	30304538	30211287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_30215083_30221666_30221796_30241370_30241424_30242536_30242577_30260927_30261003_30262145_30262223_30304050
transcript_75725.known	chr6	-	831	1	FSM	ENSMUSG00000039130.19	ENSMUST00000202393.2	831	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	254	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTCCTGCTGCTAGAGA	NA	False	NA	-15	True	AATAAA	-10	NA	30367217	30366386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_30366400_30367200
transcript_75726.known	chr6	-	1824	10	FSM	ENSMUSG00000039130.19	ENSMUST00000080812.14	1824	10	0	0	0	0	multi-exon	FALSE	canonical	1	382	junction_8	221.210865270177	1011	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGCTAGAGAATTGTTTT	-9	True	NA	-7	True	AATAAA	-18	NA	30391022	30366378	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_30366745_30370263_30370471_30372736_30372950_30373241_30373483_30374763_30374919_30375937_30376066_30381779_30381864_30382535_30382687_30387419_30387532_30390855
transcript_75727.known	chr6	-	1865	11	FSM	ENSMUSG00000039130.19	ENSMUST00000102992.10	1865	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	406.359065359689	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTCCTGCTGCTAGAGA	-14	True	NA	-15	True	AATAAA	-10	NA	30391027	30366386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_30366745_30369931_30369976_30370263_30370471_30372736_30372950_30373241_30373483_30374763_30374919_30375937_30376066_30381779_30381864_30382535_30382687_30387419_30387532_30390855
transcript_75730.known	chr6	+	498	2	FSM	ENSMUSG00000085470.2	ENSMUST00000132023.2	498	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCACTGTGTCGATTTAAT	-1	True	NA	NA	False	NA	NA	NA	30460983	30463312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_30461129_30462959
transcript_75739.known	chr6	-	2273	15	FSM	ENSMUSG00000029782.21	ENSMUST00000115157.8	2273	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_14	253.514963532123	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGCATCTTGAAAGGTCAA	2	True	NA	-18	True	ATTAAA	-16	NA	30509717	30482413	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508842_30509683
transcript_7574.known	chr10	+	847	3	FSM	ENSMUSG00000020072.16	ENSMUST00000130531.2	847	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	1.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGACAGGATTTCTCTG	4329	False	NA	NA	False	AAGAAA	-40	NA	62889988	62893907	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_62890285_62892557_62892621_62893419
transcript_75740.known	chr6	-	3485	15	FSM	ENSMUSG00000029782.21	ENSMUST00000115160.10	3485	15	0	0	0	0	multi-exon	FALSE	canonical	3	776	junction_14	62.8738614129878	721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTGGTGAAATCATTTGAA	NA	False	NA	-9	True	AATAAA	-19	NA	30509782	30481226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508802_30509683
transcript_75741.known	chr6	+	1340	3	FSM	ENSMUSG00000029784.14	ENSMUST00000031797.11	1340	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTAAATCTACTCATATGT	10	True	NA	NA	False	AATATA	-17	NA	30509847	30520252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_30510291_30517503_30517559_30519410
transcript_75743.nic	chr6	+	1127	7	ISM	ENSMUSG00000071553.11	ENSMUST00000096066.5	1388	11	5323	0	263	0	3prime_fragment	FALSE	canonical	2	2	junction_5	2.98142396999972	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTTCTGGTCATTTCCT	1912	False	NA	NA	False	ATTAAA	-22	NA	30546903	30564475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_30547206_30549240_30549340_30550743_30550855_30551964_30552056_30554162_30554363_30557670_30557756_30564236
transcript_75745.known	chr6	-	3447	11	FSM	ENSMUSG00000029790.17	ENSMUST00000031810.15	3447	11	0	0	0	0	multi-exon	TRUE	canonical	3	75	junction_8	9.18095855561934	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTCGTTTGCTATTAATG	NA	False	NA	0	True	ATTAAA	-16	NA	30693748	30653455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_30655850_30656477_30656694_30657296_30657412_30658355_30658424_30658771_30658924_30660868_30661014_30666265_30666336_30667379_30667442_30671321_30671370_30680129_30680194_30693635
transcript_75754.nnic	chr6	-	614	6	NNC	ENSMUSG00000029790.17	novel	386	5	NA	NA	-27	1543	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	37.8280319340037	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTACAAGTTGTGTTCTTG	NA	False	NA	NA	False	ATTAAA	-19	NA	30693775	30664483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_30664714_30666265_30666336_30667379_30667442_30671321_30671370_30680129_30680194_30693635
transcript_75756.known	chr6	-	438	6	FSM	ENSMUSG00000029790.17	ENSMUST00000169422.8	438	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	37.4432904536981	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCTAATGTCTTCTGCA	32	False	NA	NA	False	AATATA	-18	NA	30693675	30666026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_30666181_30666265_30666336_30667379_30667442_30671321_30671370_30680129_30680194_30693635
transcript_7576.known	chr10	-	538	3	FSM	ENSMUSG00000087030.2	ENSMUST00000155982.2	538	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCCTGTCTTTGATGT	NA	False	NA	NA	False	AATAAA	-17	NA	62893246	62891381	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_62891640_62892426_62892599_62893138
transcript_75761.known	chr6	-	485	3	FSM	ENSMUSG00000029790.17	ENSMUST00000115130.3	485	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	51	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTTATTCCAGACATCTTA	8	True	NA	NA	False	NA	NA	NA	30693699	30679086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_30679444_30680129_30680194_30693635
transcript_75765.known	chr6	-	3155	24	FSM	ENSMUSG00000025607.16	ENSMUST00000166192.7	3155	24	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	47.3145369461355	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTCAAAGTTGCTATACT	NA	False	NA	-14	True	AATAAA	-15	NA	30873729	30748410	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_30748987_30749404_30749501_30749759_30749899_30750536_30750635_30786493_30786666_30787265_30787406_30787859_30787923_30788527_30788654_30789678_30789783_30790645_30790722_30792865_30793110_30793677_30793774_30801302_30801492_30802561_30802630_30803072_30803207_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30873595
transcript_7577.nnic	chr10	-	468	3	NNC	ENSMUSG00000087030.2	novel	538	3	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	1	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCCTGTCTTTGATGT	NA	False	NA	NA	False	AATAAA	-17	NA	62893278	62891381	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_62891640_62892528_62892599_62893138
transcript_75771.nic	chr6	-	2088	14	ISM	ENSMUSG00000025607.16	ENSMUST00000166192.7	3155	24	-26	43958	-26	8269	5prime_fragment	FALSE	canonical	3	177	junction_5	22.345326345065	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTCTTGTTTCATTTTT	NA	False	NA	NA	False	AATAAA	-18	NA	30873755	30792368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_30793110_30793677_30793774_30801302_30801492_30802561_30802630_30803072_30803207_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30873595
transcript_75775.known	chr6	-	961	10	FSM	ENSMUSG00000025607.16	ENSMUST00000131256.8	961	10	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	71.4927260393896	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGGATTCTAAGTAACACA	NA	False	NA	NA	False	AATAAA	-14	NA	30873665	30835361	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_30835553_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30873595
transcript_75779.nic	chr6	-	651	5	ISM	ENSMUSG00000025607.16	ENSMUST00000131256.8	961	10	-90	26948	-26	9522	5prime_fragment	FALSE	canonical	3	203	junction_3	12.6293309403151	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCGTAAACCATTCTTTTG	NA	False	NA	NA	False	AATAAA	-18	NA	30873755	30862309	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30873595
transcript_75780.nnic	chr6	-	618	5	NNC	ENSMUSG00000025607.16	novel	333	4	NA	NA	2	1463	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	85.2686929652378	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAGAGTTTTAATAAAATT	NA	False	NA	NA	False	AATAAA	-28	NA	30873727	30870368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_30870543_30871781_30871863_30872476_30872530_30872998_30873177_30873595
transcript_75781.nnic	chr6	-	468	4	NNC	ENSMUSG00000025607.16	novel	333	4	NA	NA	-26	1463	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	102.009803450453	66	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAGAGTTTTAATAAAATT	NA	False	NA	NA	False	AATAAA	-28	NA	30873755	30870368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_30870543_30871781_30871863_30872476_30872530_30873595
transcript_75784.known	chr6	-	215	2	FSM	ENSMUSG00000025607.16	ENSMUST00000134137.2	215	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATCTTCAGCTCTTCA	NA	False	NA	NA	False	NA	NA	NA	30873683	30873049	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_30873177_30873595
transcript_75785.known	chr6	+	2561	12	FSM	ENSMUSG00000051855.16	ENSMUST00000163949.9	2561	12	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_7	40.2939611577855	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGATTCCGGCTTCCCCTCC	-3	True	NA	13	True	AATAAA	-19	NA	30738048	30748461	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_30738335_30740668_30740824_30742139_30742220_30742526_30742605_30742714_30742852_30743012_30743072_30744352_30744394_30744860_30744932_30745080_30745183_30745828_30745906_30746260_30746325_30747050
transcript_7579.known	chr10	+	2404	9	FSM	ENSMUSG00000112129.2	ENSMUST00000178684.3	2404	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	1.76334199745824	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCGGCTACTCTCCAGCC	1594	False	NA	NA	False	NA	NA	NA	62897360	62913741	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_62897481_62901562_62901663_62902303_62902403_62903207_62903318_62903436_62903467_62907185_62907275_62907647_62907827_62910839_62910903_62912127
transcript_75791.known	chr6	+	2665	13	FSM	ENSMUSG00000051855.16	ENSMUST00000124665.3	2665	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	120.876888701779	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCCGGCTTCCCCTCCCCC	0	True	NA	16	True	AATAAA	-22	NA	30738051	30748464	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_30738335_30740238_30740343_30740668_30740824_30742139_30742220_30742526_30742605_30742714_30742852_30743012_30743072_30744352_30744394_30744860_30744932_30745080_30745183_30745828_30745906_30746260_30746325_30747050
transcript_75797.known	chr6	+	11395	18	FSM	ENSMUSG00000025609.16	ENSMUST00000026699.15	11395	18	0	0	0	0	multi-exon	FALSE	canonical	1	225	junction_9	99.990726213583	385	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGTTTGCCAAAATTACTT	NA	False	NA	NA	False	AATAAA	-17	NA	31375669	31493746	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_31375890_31395865_31395936_31403648_31403792_31405071_31405161_31408074_31408185_31409873_31410067_31426430_31426509_31428453_31428520_31435889_31436003_31445065_31445279_31451233_31451456_31454861_31454992_31466269_31466418_31467376_31467492_31469579_31469720_31473603_31473707_31476821_31476877_31484559
transcript_75808.known	chr6	-	964	3	FSM	ENSMUSG00000086212.8	ENSMUST00000144232.8	964	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTTTAATACAGTGTC	NA	False	NA	NA	False	ATTAAA	-24	NA	31375708	31343819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_31344528_31372632_31372730_31375549
transcript_75816.known	chr6	-	1550	8	FSM	ENSMUSG00000053768.14	ENSMUST00000066379.11	1550	8	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_3	29.0320020470023	1703	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTGACTAAGACTGGCC	NA	False	NA	-10	True	AATAAA	-25	NA	33037195	32769151	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_32769862_32780824_32780961_32829079_32829151_32869226_32869311_32945135_32945254_32985417_32985500_33026271_33026360_33036934
transcript_75817.known	chr6	-	1467	8	FSM	ENSMUSG00000053768.14	ENSMUST00000124436.8	1467	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	306.500990443517	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGCATTTTCTGACTAAG	NA	False	NA	-17	True	AATAAA	-18	NA	33037171	32769158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_32769862_32780824_32780961_32829079_32829151_32869226_32869311_32945135_32945202_32985417_32985500_33026271_33026360_33036934
transcript_75818.known	chr6	-	1363	6	FSM	ENSMUSG00000053768.14	ENSMUST00000115091.2	1363	6	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_1	31.2089730686545	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAGAATTATTAGTTTCTG	NA	False	NA	-12	True	AATAAA	-16	NA	33037152	32828377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_32829151_32869226_32869311_32945135_32945254_32985417_32985500_33026271_33026360_33036934
transcript_7582.known	chr10	-	1833	4	FSM	ENSMUSG00000020067.9	ENSMUST00000218978.2	1833	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	3.29983164553722	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAACAAAAAACAAAACG	NA	False	NA	NA	False	TTTAAA	-2	NA	62958463	62952055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_62952806_62954199_62954334_62955807_62955974_62957680
transcript_75820.known	chr6	+	4824	18	FSM	ENSMUSG00000029763.18	ENSMUST00000052266.15	4824	18	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_11	15.4671210608191	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCGTATGTTGTTTTTCTC	NA	False	NA	20	True	ATTAAA	-22	NA	33226019	33950914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_33226174_33242874_33243065_33254121_33254317_33273667_33273853_33282219_33282330_33309145_33309390_33324717_33324893_33415314_33415461_33418885_33418975_33556916_33557014_33734901_33735122_33792608_33792746_33815909_33816066_33838995_33839175_33887422_33887565_33895335_33895515_33898312_33898473_33948848
transcript_75826.known	chr6	+	1060	6	FSM	ENSMUSG00000029763.18	ENSMUST00000139132.2	1060	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	51.1640498787967	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTTTTTAATCTTTTGT	NA	False	NA	NA	False	ATTAAA	-23	NA	33226070	33296331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_33226174_33242874_33243065_33254121_33254317_33273667_33273853_33282219_33282330_33296054
transcript_75829.nic	chr6	+	585	2	ISM	ENSMUSG00000029763.18	ENSMUST00000139132.2	1060	6	-44	53019	7	-53019	5prime_fragment	FALSE	canonical	3	145	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33226026	33243312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_33226174_33242874
transcript_7583.known	chr10	-	5246	20	FSM	ENSMUSG00000020067.9	ENSMUST00000095580.3	5246	20	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_11	6.54919588644307	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAATCATG	NA	False	NA	NA	False	AATAAA	-12	NA	63039731	62951573	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_62952806_62954199_62954334_62955807_62955974_62957680_62957889_62959049_62959177_62961447_62961528_62963406_62963557_62966761_62966984_62970711_62970851_62971486_62972075_62981614_62981988_62983655_62983773_62985801_62985826_62988573_62988716_62998000_62998073_62999291_62999404_63003011_63003064_63005033_63005210_63028165_63029063_63039496
transcript_75831.known	chr6	+	3058	20	FSM	ENSMUSG00000056215.14	ENSMUST00000070189.10	3058	20	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_5	1.53806728381078	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCCTTTTCCAGACTAATTA	NA	False	NA	NA	False	AATAAA	-19	NA	34006382	34110969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_34006689_34013435_34013544_34016242_34016325_34020339_34020441_34025793_34025876_34033005_34033131_34039285_34039430_34047995_34048077_34049304_34049392_34050650_34050758_34055598_34055719_34063310_34063408_34067106_34067221_34069671_34069874_34072458_34072555_34093323_34093455_34104111_34104201_34106039_34106166_34108899_34109046_34110255
transcript_75836.known	chr6	-	6253	10	FSM	ENSMUSG00000018999.15	ENSMUST00000019143.9	6253	10	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_2	11.5223882983853	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTGTCCAATCACCATTG	NA	False	NA	NA	False	AATAAA	-18	NA	34154046	34130314	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_34135562_34136367_34136444_34137407_34137484_34138610_34138721_34140263_34140325_34140523_34140606_34143308_34143359_34144559_34144663_34147395_34147510_34153712
transcript_75838.nic	chr6	-	701	3	ISM	ENSMUSG00000018999.15	ENSMUST00000145857.8	4110	9	-137	9386	4	-6953	5prime_fragment	FALSE	canonical	3	218	junction_1	7	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGGGAATTTTACTTT	NA	False	NA	NA	False	ATTAAA	-3	NA	34154042	34144405	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_34144663_34147395_34147510_34153712
transcript_7584.known	chr10	+	3914	26	FSM	ENSMUSG00000020064.10	ENSMUST00000219577.2	3914	26	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_16	90.360929610092	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGTAGTTTCTATGGTTG	NA	False	NA	17	True	AATAAA	-31	NA	63079701	63153657	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_63079943_63081196_63081228_63081600_63081905_63099804_63099965_63105406_63105484_63109229_63109452_63110775_63110868_63114113_63114245_63118959_63119121_63121430_63121508_63121795_63121921_63123297_63123358_63123676_63123789_63124830_63125021_63126282_63126456_63134898_63135019_63139623_63139648_63142126_63142226_63143520_63143689_63144085_63144230_63147245_63147413_63147626_63147694_63150265_63150349_63151438_63151623_63152478_63152582_63153058
transcript_75845.known	chr6	-	1387	10	FSM	ENSMUSG00000001642.19	ENSMUST00000102980.11	1387	10	0	0	0	0	multi-exon	FALSE	canonical	3	629	junction_4	199.673498924718	6257	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGTGGTGGTCCGTTTTG	NA	False	NA	-5	True	AATAAA	-16	NA	34294413	34280868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_34281275_34283474_34283558_34285913_34285998_34286510_34286593_34286895_34287003_34287447_34287571_34287859_34287938_34288856_34288974_34289574_34289743_34294274
transcript_7585.known	chr10	+	3898	25	FSM	ENSMUSG00000020064.10	ENSMUST00000020258.10	3898	25	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_7	41.1321548993809	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATACCAGTAGTTTCTATG	NA	False	NA	13	True	AATAAA	-27	NA	63079689	63153653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_63079943_63081196_63081228_63081600_63081905_63099804_63099965_63105406_63105484_63109229_63109452_63110775_63110868_63114113_63114245_63118959_63119121_63121430_63121508_63121795_63121921_63123297_63123358_63123676_63123789_63124830_63125021_63126282_63126456_63134898_63135019_63142126_63142226_63143520_63143689_63144085_63144230_63147245_63147413_63147626_63147694_63150265_63150349_63151438_63151623_63152478_63152582_63153058
transcript_75851.known	chr6	+	1358	10	FSM	ENSMUSG00000029762.7	ENSMUST00000038406.7	1358	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	1.94999208608714	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGAAGTGATTTTTGAG	NA	False	NA	NA	False	AATAAA	-32	NA	34331053	34345398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_34331232_34333190_34333359_34334395_34334513_34335065_34335144_34340266_34340390_34340656_34340764_34341171_34341254_34342141_34342226_34342837_34342921_34345060
transcript_75852.known	chr6	+	1371	10	FSM	ENSMUSG00000061758.14	ENSMUST00000038383.14	1371	10	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_8	4.10960933531265	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTTTCAACTGTCAGAAT	3006	False	NA	4	True	AATAAA	-18	NA	34361152	34373885	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_34361343_34364606_34364775_34365710_34365828_34366989_34367068_34368951_34369075_34369323_34369431_34369849_34369932_34370992_34371077_34371661_34371745_34373546
transcript_75853.known	chr6	+	1280	10	FSM	ENSMUSG00000061758.14	ENSMUST00000139156.8	1280	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	7.01497516340649	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGACATTTTCAACTGTCAG	3069	False	NA	1	True	AATAAA	-15	NA	34361215	34373882	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_34361343_34364606_34364775_34365710_34365828_34367014_34367068_34368951_34369075_34369323_34369431_34369849_34369932_34370992_34371077_34371661_34371745_34373546
transcript_75855.known	chr6	+	1022	10	FSM	ENSMUSG00000061758.14	ENSMUST00000115051.8	1022	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	7.5096645549848	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATACCAAACCAGCCTCAAC	3069	False	NA	NA	False	NA	NA	NA	34361215	34373683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_34361343_34364690_34364775_34365710_34365828_34366989_34367068_34368951_34369075_34369323_34369431_34369849_34369932_34370992_34371077_34371661_34371745_34373546
transcript_75856.known	chr6	+	1131	3	FSM	ENSMUSG00000061758.14	ENSMUST00000144384.3	1131	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAGAAATTGAAGGGA	3037	False	NA	NA	False	NA	NA	NA	34361183	34366514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_34361343_34364606_34364775_34365710
transcript_75858.known	chr6	+	1281	10	FSM	ENSMUSG00000052131.8	ENSMUST00000007449.9	1281	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.666666666666667	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTAGTATGCTGTCCATT	4986	False	NA	NA	False	AATAAA	-19	NA	34389268	34400077	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_34389411_34392254_34392423_34393052_34393170_34394217_34394296_34395928_34396052_34396342_34396450_34396853_34396936_34397380_34397465_34397997_34398081_34399780
transcript_75861.nnic	chr6	+	1435	4	NNC	ENSMUSG00000038871.6	novel	2220	3	NA	NA	-52	-486	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_2	36.5786823163438	106	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGCGCAAGGTGCCTCGAG	NA	False	NA	15	True	AATAAA	-20	NA	34453238	34482062	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_34453358_34464224_34464268_34464469_34464886_34481205
transcript_75863.known	chr6	+	2220	3	FSM	ENSMUSG00000038871.6	ENSMUST00000045372.6	2220	3	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_2	7.5	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTTCTAAATCATTGCTG	NA	False	NA	NA	False	AATAAA	-19	NA	34453141	34482548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_34453358_34464224_34464886_34481205
transcript_75868.nnic	chr6	+	1401	3	NNC	ENSMUSG00000038871.6	novel	2220	3	NA	NA	-61	-486	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	39	108	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGCGCAAGGTGCCTCGAG	NA	False	NA	15	True	AATAAA	-20	NA	34453229	34482062	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_34453358_34464469_34464886_34481205
transcript_75869.known	chr6	+	1861	2	FSM	ENSMUSG00000038871.6	ENSMUST00000135743.2	1861	2	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATCATTGACAGACTATAAT	NA	False	NA	NA	False	ATTAAA	-14	NA	34453290	34466018	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_34453358_34464224
transcript_75871.known	chr6	+	4041	12	FSM	ENSMUSG00000029761.17	ENSMUST00000115021.8	4041	12	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_3	28.0630930241598	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTCGTGCATTCTTTG	1257	False	NA	32	True	AATAAA	-20	NA	34686376	34752408	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_34686633_34718723_34718871_34722553_34722951_34730377_34730524_34732568_34732834_34734918_34735060_34739044_34739089_34739185_34739265_34741890_34742029_34743037_34743134_34747982_34748064_34750157
transcript_75873.nnic	chr6	+	976	4	NNC	ENSMUSG00000029761.17	novel	4041	12	NA	NA	-33	4709	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	100.677703589226	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCTGAATGTGGTGGGTT	1224	False	NA	NA	False	ATTAAA	-25	NA	34686343	34723852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_34686633_34718723_34718871_34722553_34722951_34723709
transcript_75874.nic	chr6	+	773	3	ISM	ENSMUSG00000029761.17	ENSMUST00000031775.13	2142	13	-225	27739	-33	3747	5prime_fragment	FALSE	canonical	3	208	junction_2	9	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAAAAGGAAGAGGAGGA	1224	False	NA	NA	False	NA	NA	NA	34686343	34722890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_34686633_34718723_34718871_34722553
transcript_75876.known	chr6	+	1264	1	FSM	ENSMUSG00000029761.17	ENSMUST00000201024.2	1264	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAACCTTT	1305	False	NA	NA	False	NA	NA	NA	34686424	34687688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_34686400_34687700
transcript_75877.known	chr6	+	805	4	FSM	ENSMUSG00000038836.16	ENSMUST00000115014.8	805	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	0.816496580927726	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCTCAGATTATTCACACT	2116	False	NA	NA	False	NA	NA	NA	34757823	34762579	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_34757995_34759034_34759154_34760504_34760566_34762125
transcript_75880.known	chr6	+	785	1	FSM	ENSMUSG00000082920.2	ENSMUST00000119745.2	785	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACACTAAGTTTTCTGT	7906	False	NA	NA	False	AAAAAG	-36	NA	34763613	34764398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_34763600_34764400
transcript_75881.nnic	chr6	-	1558	5	NNC	ENSMUSG00000046806.14	novel	3326	4	NA	NA	-34	11	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	9.44391338376205	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGACTATTCAATCCTGTTCA	7563	False	NA	-9	True	NA	NA	NA	34855029	34850618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_34851631_34852286_34852329_34852471_34852548_34853473_34853707_34854834
transcript_75883.known	chr6	-	3681	4	FSM	ENSMUSG00000046806.14	ENSMUST00000055097.11	3681	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	9.39266853573691	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTGTTTTTCACTGACTG	7636	False	NA	NA	False	TTTAAA	-3	NA	34854956	34848705	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_34851631_34852471_34852548_34853473_34853707_34854509
transcript_75884.known	chr6	-	3326	4	FSM	ENSMUSG00000046806.14	ENSMUST00000115007.9	3326	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	4.92160768674447	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCACCATAGTAAAACCACT	7597	False	NA	NA	False	ATTAAA	-16	NA	34854995	34848774	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_34851631_34852471_34852548_34853473_34853707_34854834
transcript_75886.known	chr6	-	1501	4	FSM	ENSMUSG00000046806.14	ENSMUST00000115006.2	1501	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	8.9566858950296	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTTGTGACGACTATTC	7648	False	NA	-20	True	NA	NA	NA	34854944	34850629	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_34851631_34852390_34852548_34853473_34853707_34854834
transcript_75889.known	chr6	-	2682	15	FSM	ENSMUSG00000058486.12	ENSMUST00000081214.12	2682	15	0	0	0	0	multi-exon	FALSE	canonical	2	55	junction_12	11.4653426304081	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTGTCTCTTTCTGGAC	5776	False	NA	-1	True	NA	NA	NA	34887811	34857360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_34857904_34861118_34861317_34863000_34863114_34863742_34863852_34865888_34866058_34866171_34866267_34868321_34868473_34869275_34869470_34873115_34873275_34881451_34881618_34882419_34882554_34883575_34883659_34885048_34885257_34886295_34886476_34887631
transcript_75891.nic	chr6	+	1442	9	NIC	ENSMUSG00000029848.12	novel	1803	10	NA	NA	-48	0	combination_of_known_junctions	FALSE	canonical	1	6	junction_2	25.8202924073295	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTGGTGTCCTGGCAGT	NA	False	NA	13	True	TATAAA	-18	NA	34897846	34916279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_34897990_34904653_34904789_34907295_34907372_34907817_34907903_34909932_34910221_34911014_34911301_34912517_34912592_34914967_34915080_34916036
transcript_75892.known	chr6	+	1455	9	FSM	ENSMUSG00000029848.12	ENSMUST00000114999.8	1455	9	0	0	0	0	multi-exon	FALSE	canonical	1	14	junction_3	19.2272592950738	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTTTGGTGTCCTGGCA	NA	False	NA	11	True	TATAAA	-16	NA	34897894	34916277	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_34897990_34904653_34904852_34907295_34907372_34907817_34907903_34909932_34910221_34911014_34911301_34912517_34912592_34914967_34915080_34916036
transcript_75895.known	chr6	+	1207	8	FSM	ENSMUSG00000029848.12	ENSMUST00000114997.3	1207	8	0	0	0	0	multi-exon	FALSE	canonical	1	14	junction_2	25.1931315550691	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTTTGGTGTCCTGGCA	NA	False	NA	11	True	TATAAA	-16	NA	34897944	34916277	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_34897990_34907295_34907372_34907817_34907903_34909932_34910221_34911014_34911301_34912517_34912592_34914967_34915080_34916036
transcript_75899.nnic	chr6	+	1259	7	NIC	ENSMUSG00000029848.12	novel	1803	10	NA	NA	-76	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_1	23.8607068908977	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTGGTGTCCTGGCAGT	NA	False	NA	13	True	TATAAA	-18	NA	34897818	34916279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_34897990_34907817_34907903_34909932_34910221_34911014_34911301_34912517_34912592_34914967_34915080_34916036
transcript_75903.known	chr6	-	2003	12	FSM	ENSMUSG00000029847.14	ENSMUST00000201355.4	2003	12	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_7	2.56808125305919	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGATGAAGAGCATAATCAG	NA	False	NA	NA	False	NA	NA	NA	34965339	34922869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_34923272_34925142_34925239_34925332_34925442_34925739_34925905_34930699_34930954_34931904_34932062_34932804_34932926_34933811_34933994_34936389_34936550_34953960_34954119_34955843_34955991_34965287
transcript_75904.nic	chr6	-	1378	3	ISM	ENSMUSG00000029847.14	ENSMUST00000201355.4	2003	12	39776	-649	-51	-8	3prime_fragment	FALSE	canonical	3	8	junction_1	1.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAACAAACTAGGGATGTAG	NA	False	NA	NA	False	NA	NA	NA	34925563	34922220	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_34923272_34925142_34925239_34925332
transcript_75906.known	chr6	-	3296	11	FSM	ENSMUSG00000038784.14	ENSMUST00000202417.2	3296	11	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	41.7378724901018	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAAATCTTAACAATA	7646	False	NA	NA	False	AAAAAG	-28	NA	35110659	35021930	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_35023294_35027996_35028495_35029776_35030027_35033145_35033204_35041832_35041958_35045522_35045649_35046304_35046407_35047151_35047239_35054915_35055114_35056895_35057162_35110436
transcript_75912.nic	chr6	-	2338	10	ISM	ENSMUSG00000038784.14	ENSMUST00000202417.2	3296	11	-37	5698	-37	1775	5prime_fragment	FALSE	canonical	3	141	junction_8	25.7629267565183	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTAAAATTTTTTTAGTC	7609	False	NA	NA	False	AATAAA	-31	NA	35110696	35027628	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_35028495_35029776_35030027_35033145_35033204_35041832_35041958_35045522_35045649_35046304_35046407_35047151_35047239_35054915_35055114_35056895_35057162_35110436
transcript_75913.nic	chr6	-	612	3	ISM	ENSMUSG00000038784.14	ENSMUST00000202417.2	3296	11	-37	33097	-37	-25193	5prime_fragment	FALSE	canonical	3	141	junction_1	39.5	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGAAAGAAAACAGAAAATCT	7609	False	NA	NA	False	NA	NA	NA	35110696	35055027	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_35055114_35056895_35057162_35110436
transcript_75914.known	chr6	-	3473	12	FSM	ENSMUSG00000038784.14	ENSMUST00000114993.9	3473	12	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_2	43.8453329687493	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGACCCTCGGGTGAGTC	7681	False	NA	-8	True	AATAAA	-14	NA	35110624	34999005	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_35000368_35001062_35001276_35027996_35028495_35029776_35030027_35033145_35033204_35041832_35041958_35045522_35045649_35046304_35046407_35047151_35047239_35054915_35055114_35056895_35057162_35110436
transcript_75915.known	chr6	-	3279	11	FSM	ENSMUSG00000038784.14	ENSMUST00000114989.9	3279	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	65.3360543651053	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTCGGGTGAGTCTTGTT	7676	False	NA	-3	True	AATAAA	-19	NA	35110629	34999000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_35000368_35027996_35028495_35029776_35030027_35033145_35033204_35041823_35041958_35045522_35045649_35046304_35046407_35047151_35047239_35054915_35055114_35056895_35057162_35110436
transcript_75918.known	chr6	+	2409	15	FSM	ENSMUSG00000038759.16	ENSMUST00000202898.2	2409	15	0	0	0	0	multi-exon	FALSE	canonical	2	193	junction_5	41.0390555645796	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGTTATTCCTTCTTGG	NA	False	NA	NA	False	AATAAA	-15	NA	35154550	35182588	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_35154595_35160783_35160927_35163367_35163540_35165558_35165704_35166030_35166191_35166789_35167019_35168808_35168974_35171339_35171516_35173368_35173486_35173653_35173792_35175770_35175922_35176788_35176995_35178920_35179104_35180897_35180949_35182259
transcript_75920.nic	chr6	+	475	2	ISM	ENSMUSG00000038759.16	ENSMUST00000202898.2	2409	15	-224	21598	-29	-21598	5prime_fragment	FALSE	canonical	3	226	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTTTAGATCTATTTATT	NA	False	NA	NA	False	AATAAA	-16	NA	35154326	35160990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_35154595_35160783
transcript_75921.known	chr6	+	690	4	FSM	ENSMUSG00000073155.13	ENSMUST00000130875.8	690	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	461.033621333629	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTTCTGGTGAATTAATC	NA	False	NA	13	True	ATTAAA	-17	NA	35229650	35238572	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_35229718_35229890_35229981_35237344_35237399_35238093
transcript_75929.known	chr6	+	1232	3	FSM	ENSMUSG00000073155.13	ENSMUST00000136110.2	1232	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	489	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGTGGTAAAGTGAGT	NA	False	NA	NA	False	NA	NA	NA	35229666	35238957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_35229981_35237344_35237399_35238093
transcript_75930.known	chr6	+	2521	3	FSM	ENSMUSG00000073155.13	ENSMUST00000152147.8	2521	3	0	0	0	0	multi-exon	FALSE	canonical	3	978	junction_2	33.5	4518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGTCTGCCACACTACTT	NA	False	NA	15	True	NA	NA	NA	35229588	35240431	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_35229718_35237344_35237399_35238093
transcript_75931.nnic	chr6	+	1021	3	Antisense	novelGene_ENSMUSG00000029843.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	5	junction_1	2	16	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTTGTATTCACCATGGA	3538	False	NA	NA	False	NA	NA	NA	35256276	35263804	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr6_+_35256459_35262449_35262575_35263090
transcript_75933.known	chr6	-	2101	5	FSM	ENSMUSG00000029843.5	ENSMUST00000122829.2	2101	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	1.6393596310755	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAAAAGAATA	NA	False	NA	NA	False	TTTAAA	-2	NA	35285064	35263437	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_35264337_35264688_35264853_35266728_35266866_35278659_35278789_35284292
transcript_75934.known	chr6	-	3960	4	FSM	ENSMUSG00000029840.9	ENSMUST00000031866.9	3960	4	0	0	0	0	multi-exon	FALSE	canonical	3	759	junction_3	9.97775303139718	490	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGCTGCTCATAGAAAAG	4148	False	NA	NA	False	ATTAAA	-15	NA	35516823	35485840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_35489253_35498834_35498919_35499616_35499731_35516473
transcript_75935.known	chr6	-	7082	12	FSM	ENSMUSG00000038648.6	ENSMUST00000041093.6	7082	12	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_10	9.34552529156102	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCCTGGTCTTTAAATC	NA	False	NA	0	True	AATAAA	-18	NA	37419081	37304189	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_37309436_37311297_37311518_37312762_37312890_37313149_37313250_37330491_37330561_37331685_37331745_37332577_37332725_37335397_37335583_37339292_37339381_37340902_37341079_37356746_37356964_37418633
transcript_75937.nnic	chr6	-	2603	11	NNC	ENSMUSG00000038648.6	novel	7082	12	NA	NA	-40966	3170	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_10	25.5556256037687	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTCCTCTTTCATACAA	8006	False	NA	NA	False	ATTAAA	-25	NA	37354436	37308056	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_37309436_37311297_37311518_37312762_37312890_37313149_37313250_37330491_37330561_37331685_37331745_37332577_37332725_37335397_37335583_37339292_37339381_37340902_37341079_37354383
transcript_75938.nnic	chr6	-	1159	5	NNC	ENSMUSG00000038648.6	novel	7082	12	NA	NA	-51	-27696	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	42.1507710487009	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCAATGAAGTTGTCATGT	NA	False	NA	NA	False	AATAAA	-20	NA	37419132	37338922	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_37339102_37339292_37339381_37340902_37341079_37356746_37356964_37418633
transcript_7594.nic	chr10	+	1873	9	ISM	ENSMUSG00000020064.10	ENSMUST00000020258.10	3898	25	-106	34197	-5	-5540	5prime_fragment	FALSE	canonical	3	265	junction_7	22.4318412084251	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAGAAAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	63079583	63119456	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_63079943_63081196_63081228_63081600_63081905_63099804_63099965_63105406_63105484_63109229_63109452_63110775_63110868_63114113_63114245_63118959
transcript_75941.nnic	chr6	+	412	3	NNC	ENSMUSG00000029829.5	novel	631	3	NA	NA	-21763	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3.5	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCTGGCTCTTTTATTAT	NA	False	NA	NA	False	TTTAAA	-18	NA	38064426	38092744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_38064509_38091542_38091612_38092483
transcript_75942.known	chr6	+	631	3	FSM	ENSMUSG00000029829.5	ENSMUST00000031851.5	631	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	1.5	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCTGGCTCTTTTATTAT	NA	False	NA	NA	False	TTTAAA	-18	NA	38086189	38092744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_38086491_38091542_38091612_38092483
transcript_75943.known	chr6	-	4944	13	FSM	ENSMUSG00000029826.15	ENSMUST00000114900.8	4944	13	0	0	0	0	multi-exon	TRUE	canonical	3	16	junction_3	27.2865453210104	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTCTGTTTATGGTTCT	9994	False	NA	0	True	AATAAA	-32	NA	38331208	38282220	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_38284392_38288112_38288247_38288524_38288656_38289328_38289420_38293255_38293359_38296638_38296760_38302126_38302302_38306083_38306208_38308697_38308797_38309076_38310124_38313346_38313600_38317154_38317291_38330849
transcript_75944.known	chr6	-	3400	9	FSM	ENSMUSG00000029826.15	ENSMUST00000031850.10	3400	9	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_7	12.2212673238089	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCAGTTGGATTTTTTT	9664	False	NA	-3	True	NA	NA	NA	38331538	38292602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_38293359_38296638_38296760_38302126_38302302_38306083_38306208_38308697_38308797_38309076_38310124_38313346_38313600_38317154_38317291_38330849
transcript_75945.known	chr6	-	3052	9	FSM	ENSMUSG00000029826.15	ENSMUST00000114898.3	3052	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	27.0081006366608	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCAGTTGGATTTTTTT	9664	False	NA	-3	True	NA	NA	NA	38331538	38292602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_38293359_38296638_38296760_38302126_38302302_38306083_38306208_38308697_38308797_38309424_38310124_38313346_38313600_38317154_38317291_38330849
transcript_75947.nnic	chr6	-	2387	8	NIC	ENSMUSG00000029826.15	novel	3400	9	NA	NA	-34	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	29.5047557564013	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCAGTTGGATTTTTTT	9630	False	NA	-3	True	NA	NA	NA	38331572	38292602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_38293359_38296638_38296760_38302126_38302302_38306083_38306208_38308697_38308797_38313346_38313600_38317154_38317291_38330849
transcript_75949.known	chr6	+	348	1	FSM	ENSMUSG00000057696.5	ENSMUST00000119767.2	348	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	378	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGAAAGTTTTCCTTTAA	1214	False	NA	NA	False	NA	NA	NA	38353741	38354089	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_38353700_38354100
transcript_75953.known	chr6	+	500	2	FSM	ENSMUSG00000019689.5	ENSMUST00000147651.2	500	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTTTGGTTTTTGTGTGC	8608	False	NA	8	True	ATTAAA	-16	NA	38510436	38516383	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_38510647_38516093
transcript_75954.known	chr6	+	479	2	FSM	ENSMUSG00000019689.5	ENSMUST00000019833.5	479	2	0	0	0	0	multi-exon	FALSE	canonical	3	741	junction_1	0	2788	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTTGGTTTTTGTGTGCT	9929	False	NA	9	True	ATTAAA	-17	NA	38511757	38516384	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_38511946_38516093
transcript_75956.nic	chr6	+	1128	3	ISM	ENSMUSG00000079598.5	ENSMUST00000114874.5	1431	5	13608	0	12796	0	3prime_fragment	FALSE	canonical	2	3	junction_1	1	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGGCATTTGTTCCA	NA	False	NA	NA	False	AATAAA	-20	NA	38653609	38657800	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_38653899_38654443_38654545_38657062
transcript_75957.known	chr6	-	3231	12	FSM	ENSMUSG00000038507.7	ENSMUST00000038398.7	3231	12	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_11	5.37671748458954	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGACTGGAGTTTATTTT	NA	False	NA	NA	False	AATAAA	-19	NA	39095283	39063343	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_39064575_39065911_39066064_39067132_39067264_39068238_39068315_39070561_39070659_39073469_39073612_39077182_39077379_39079492_39079617_39082823_39082926_39088444_39088746_39091099_39091236_39094740
transcript_75958.known	chr6	+	544	1	FSM	ENSMUSG00000115026.2	ENSMUST00000227758.2	544	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCTTTTCCCTGGGAAGGG	NA	False	NA	NA	False	NA	NA	NA	39184001	39184545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_39184000_39184500
transcript_75960.nnic	chr6	-	1088	3	Intergenic	novelGene_113	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAGTGCTGAAGTCAGTG	NA	False	NA	NA	False	AATAAA	-25	NA	39246817	39242281	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr6_-_39242736_39243266_39243444_39246360
transcript_75967.known	chr6	-	4030	15	FSM	ENSMUSG00000029924.13	ENSMUST00000090243.8	4030	15	0	0	0	0	multi-exon	TRUE	canonical	3	160	junction_14	38.6108925098626	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATTTTGCCCTTAAGTG	NA	False	NA	-8	True	AATAAA	-16	NA	39354609	39311706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39354552
transcript_75970.known	chr6	-	2669	14	FSM	ENSMUSG00000029924.13	ENSMUST00000201448.4	2669	14	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_9	72.7375113825747	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCTGCTTAAGCTTGACA	NA	False	NA	-7	True	AATAAA	-26	NA	39354606	39312918	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39354552
transcript_75971.nic	chr6	-	2136	13	ISM	ENSMUSG00000029924.13	ENSMUST00000090243.8	4030	15	-50	8846	-50	291	5prime_fragment	FALSE	canonical	3	160	junction_12	41.2501683498248	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTGACTGTATAATTAAA	NA	False	NA	1	True	AATAAA	-19	NA	39354659	39320552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39354552
transcript_75979.known	chr6	-	2992	8	FSM	ENSMUSG00000029922.16	ENSMUST00000114823.8	2992	8	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_7	1191.73940789358	2277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTCTTGTGTGATGACCT	NA	False	NA	4	True	AATAAA	-24	NA	39396710	39374737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39396400
transcript_7598.known	chr10	+	1775	6	FSM	ENSMUSG00000020064.10	ENSMUST00000219177.2	1775	6	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_1	20.4685124032012	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTTGAAACAAGTCACAAT	NA	False	NA	NA	False	AATAAA	-20	NA	63079722	63110212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_63079943_63081196_63081228_63081600_63081905_63099804_63099965_63105406_63105484_63109229
transcript_75981.known	chr6	-	1485	5	FSM	ENSMUSG00000029922.16	ENSMUST00000122996.8	1485	5	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_4	1508.75983841034	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTGTGAAATGTCTTCT	NA	False	NA	1	True	AATAAA	-22	NA	39397001	39377687	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39396773
transcript_75991.known	chr6	+	474	2	FSM	ENSMUSG00000068601.3	ENSMUST00000156905.2	474	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTATGTGTGGTAGCCTGT	NA	False	NA	NA	False	NA	NA	NA	39396820	39397836	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_39397132_39397673
transcript_75992.known	chr6	+	830	2	FSM	ENSMUSG00000068601.3	ENSMUST00000090237.3	830	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGTGTGAATTGGCTCAT	NA	False	NA	NA	False	NA	NA	NA	39397311	39398228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_39397587_39397673
transcript_75993.known	chr6	-	751	3	FSM	ENSMUSG00000029922.16	ENSMUST00000114822.2	751	3	0	0	0	0	multi-exon	FALSE	canonical	3	4055	junction_2	144.5	3116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCCGAATGCTGTCCC	NA	False	NA	0	True	AATAAA	-25	NA	39397232	39382472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_39382895_39387021_39387151_39397032
transcript_75994.known	chr6	-	3046	8	FSM	ENSMUSG00000029922.16	ENSMUST00000031985.13	3046	8	0	0	0	0	multi-exon	FALSE	canonical	3	1453	junction_3	1193.53149458715	2515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTCTTGTGTGATGACCT	NA	False	NA	4	True	AATAAA	-24	NA	39397396	39374737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39397032
transcript_75995.known	chr6	-	1511	5	FSM	ENSMUSG00000029922.16	ENSMUST00000051671.11	1511	5	0	0	0	0	multi-exon	FALSE	canonical	3	1568	junction_2	1258.9473777724	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGAGTCTGTGTGAAATG	NA	False	NA	-5	True	AATAAA	-16	NA	39397292	39377693	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39397032
transcript_75996.known	chr6	-	1702	11	FSM	ENSMUSG00000038456.10	ENSMUST00000149162.2	1702	11	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_9	12.8953479984062	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATATTAAAAGAGAAGAAGAA	NA	False	NA	-23	True	TTTAAA	-7	NA	39466100	39440186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_39440386_39441145_39441233_39441984_39442225_39442517_39442636_39445706_39445749_39447132_39447311_39457134_39457284_39459946_39460088_39462492_39462571_39464753_39464824_39465700
transcript_76.known	ERCC-00160	+	727	1	FSM	ERCC-00160A	DQ883658	727	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	559	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00160_+_0_700
transcript_7600.known	chr10	-	3905	9	FSM	ENSMUSG00000020063.17	ENSMUST00000020257.13	3905	9	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_8	29.4870204496826	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTCCATTGTTCATAGCA	NA	False	NA	0	True	ATTAAA	-26	NA	63174811	63154785	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_63156744_63157527_63158080_63159745_63159933_63160904_63160985_63161817_63161966_63167523_63167677_63171414_63171657_63172758_63172876_63174343
transcript_76001.nnic	chr6	+	416	3	NNC	ENSMUSG00000085058.3	novel	370	4	NA	NA	-32	1821	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1	15	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTAGGCTTGTTTGGGAA	NA	False	NA	NA	False	AATAAA	-15	NA	39504414	39507029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_39504579_39506382_39506457_39506851
transcript_76005.known	chr6	+	3542	8	FSM	ENSMUSG00000046947.13	ENSMUST00000140364.8	3542	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	10.7437689582647	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACATCCCCTTTTGTGACT	NA	False	NA	NA	False	AATAAA	-24	NA	39550806	39565703	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_39552141_39553296_39553444_39556596_39556726_39557929_39558026_39560744_39560997_39562660_39562790_39563774_39563829_39564302
transcript_7601.known	chr10	-	3740	8	FSM	ENSMUSG00000020063.17	ENSMUST00000105442.3	3740	8	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_7	79.0360289839452	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTGTTTTAAAGTCTTAT	NA	False	NA	-2	True	AATACA	-22	NA	63174814	63154836	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_63156744_63157527_63158080_63159745_63159933_63160904_63160985_63161817_63161966_63167523_63167677_63171414_63171657_63174343
transcript_76015.known	chr6	+	455	4	FSM	ENSMUSG00000002416.14	ENSMUST00000119379.2	455	4	0	0	0	0	multi-exon	FALSE	canonical	3	713	junction_3	851.269770532363	14943	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTATGTTTCTGATGACAA	NA	False	NA	30	True	ATTAAA	-39	NA	39569516	39576405	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_39569647_39573384_39573530_39575199_39575300_39576325
transcript_76016.known	chr6	+	491	4	FSM	ENSMUSG00000002416.14	ENSMUST00000002490.7	491	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	1056.98470502967	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTCATTAAAGGTGTAAAT	NA	False	NA	-19	True	AAGAAA	-7	NA	39569518	39576356	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_39569738_39573384_39573530_39575199_39575296_39576325
transcript_7602.nic	chr10	-	370	3	ISM	ENSMUSG00000020063.17	ENSMUST00000020257.13	3905	9	382	16704	382	-4321	5prime_fragment	FALSE	canonical	3	191	junction_2	12	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATCAATACAATTGAAGA	NA	False	NA	19	True	AAAAAG	-5	NA	63174429	63171489	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_63171657_63172758_63172876_63174343
transcript_76022.known	chr6	-	1107	3	FSM	ENSMUSG00000029918.10	ENSMUST00000031978.9	1107	3	0	0	0	0	multi-exon	FALSE	canonical	3	1131	junction_2	267.5	5453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTTTTTGAGACAGTGGA	NA	False	NA	NA	False	AATAAA	-19	NA	39787922	39778737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_39779479_39782304_39782546_39787797
transcript_76024.known	chr6	-	500	3	FSM	ENSMUSG00000029918.10	ENSMUST00000114797.2	500	3	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_1	481	656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGTGTTTAAGATTGGAA	NA	False	NA	-18	True	AATAAA	-12	NA	39787819	39779125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_39779479_39782420_39782546_39787797
transcript_76026.nnic	chr6	+	2361	17	NIC	ENSMUSG00000029916.12	novel	2531	16	NA	NA	-63	0	combination_of_known_splicesites	FALSE	canonical	3	34	junction_5	181.494049058778	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAGTGTAATCTAAATGCA	NA	False	NA	8	True	NA	NA	NA	40302355	40373696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_40302465_40306426_40306534_40324345_40324386_40329286_40329367_40331947_40332028_40333978_40334055_40341208_40341302_40343674_40343708_40345514_40345610_40353155_40353226_40358137_40358218_40360693_40360752_40363747_40363896_40364377_40364476_40369586_40369658_40371547_40371633_40372658
transcript_76029.known	chr6	+	2531	16	FSM	ENSMUSG00000029916.12	ENSMUST00000031977.12	2531	16	0	0	0	0	multi-exon	FALSE	canonical	3	517	junction_15	44.4424221762146	606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAGTGTAATCTAAATGCA	NA	False	NA	8	True	NA	NA	NA	40302105	40373696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_40302465_40306426_40306534_40324345_40324386_40329286_40329367_40333978_40334055_40341208_40341302_40343674_40343708_40345514_40345610_40353155_40353226_40358137_40358218_40360693_40360752_40363747_40363896_40364377_40364476_40369586_40369658_40371547_40371633_40372658
transcript_76037.known	chr6	+	785	8	FSM	ENSMUSG00000029916.12	ENSMUST00000201342.4	785	8	0	0	0	0	multi-exon	FALSE	canonical	3	547	junction_1	45.5313303211791	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGGGTGCTTTCTGTCAT	NA	False	NA	NA	False	AATACA	-19	NA	40302418	40345824	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_40302465_40306426_40306534_40324345_40324386_40329286_40329367_40333978_40334055_40341208_40341302_40343674_40343708_40345514
transcript_76042.nic	chr6	+	1212	4	NIC	ENSMUSG00000029916.12	novel	785	8	NA	NA	-42	140	combination_of_known_junctions	FALSE	canonical	3	10	junction_3	289.012494924047	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTTTTAAGAATTTGATT	NA	False	NA	NA	False	AATAAA	-19	NA	40302063	40325179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_40302465_40306426_40306534_40324345_40324386_40324515
transcript_76043.nic	chr6	+	898	4	ISM	ENSMUSG00000029916.12	ENSMUST00000201342.4	785	8	-40	15873	-40	15	5prime_fragment	FALSE	canonical	3	547	junction_1	54.1130503873347	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTACAGTGTTAGTTAGGT	NA	False	NA	NA	False	AAAAAG	-24	NA	40302378	40329951	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_40302465_40306426_40306534_40324345_40324386_40329286
transcript_76046.known	chr6	+	2175	3	FSM	ENSMUSG00000029916.12	ENSMUST00000202949.2	2175	3	0	0	0	0	multi-exon	FALSE	canonical	3	547	junction_1	65.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAACAAAGAA	NA	False	NA	NA	False	NA	NA	NA	40302441	40326390	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_40302465_40306426_40306534_40324345
transcript_76047.known	chr6	+	1281	1	FSM	ENSMUSG00000029916.12	ENSMUST00000201329.2	1281	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAATCTCAAG	NA	False	NA	NA	False	NA	NA	NA	40302420	40303701	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_40302400_40303700
transcript_7605.known	chr10	+	3025	5	FSM	ENSMUSG00000036764.13	ENSMUST00000043317.7	3025	5	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_2	1.58113883008419	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACCAAGAAGCATCTGAC	NA	False	NA	NA	False	NA	NA	NA	63222341	63246355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_63222555_63231563_63231643_63233017_63233158_63242780_63242986_63243967
transcript_76057.known	chr6	+	933	7	FSM	ENSMUSG00000029911.15	ENSMUST00000117411.8	933	7	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_1	935.620961358462	4015	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAGTGGTTATATTTTT	NA	False	NA	NA	False	ATTAAA	-12	NA	40448408	40457926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_40448760_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
transcript_76065.known	chr6	+	1188	6	FSM	ENSMUSG00000029911.15	ENSMUST00000121360.8	1188	6	0	0	0	0	multi-exon	FALSE	canonical	3	2472	junction_3	238.868666844356	11753	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGGTTATATTTTTCTT	NA	False	NA	NA	False	ATTAAA	-15	NA	40448401	40457929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
transcript_76066.known	chr6	+	1063	6	FSM	ENSMUSG00000029911.15	ENSMUST00000031971.13	1063	6	0	0	0	0	multi-exon	FALSE	canonical	3	1713	junction_1	476.592320542411	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGACATGTTTTATTATTT	NA	False	NA	NA	False	NA	NA	NA	40448348	40455521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_40448394_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856
transcript_76067.known	chr6	+	579	4	FSM	ENSMUSG00000029911.15	ENSMUST00000117830.2	579	4	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	1382.20339394107	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTAAAAGGCCCTAGTTGT	NA	False	NA	NA	False	NA	NA	NA	40448459	40453445	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_40448770_40449004_40449068_40451598_40451660_40453300
transcript_76070.known	chr6	+	930	8	FSM	ENSMUSG00000029864.8	ENSMUST00000031897.8	930	8	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_5	4.42165358301205	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAAAGCATTTCTGGGTC	NA	False	NA	2	True	AATAAA	-13	NA	42222868	42227375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_42223028_42223483_42223566_42223744_42223874_42224417_42224519_42224667_42224704_42226312_42226430_42226772_42226867_42227163
transcript_76071.known	chr6	+	963	8	FSM	ENSMUSG00000029864.8	ENSMUST00000204088.3	963	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	7.32621794569033	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAAAGCATTTCTGGGTC	NA	False	NA	2	True	AATAAA	-13	NA	42222912	42227375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_42223028_42223483_42223566_42223744_42223874_42224417_42224519_42224667_42224781_42226312_42226430_42226772_42226867_42227163
transcript_76075.known	chr6	+	1147	3	FSM	ENSMUSG00000071506.5	ENSMUST00000095987.4	1147	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCAGTGCCTCCTGTTTTC	NA	False	NA	NA	False	AGTAAA	-31	NA	42238903	42241489	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_42238961_42240177_42240440_42240661
transcript_76076.known	chr6	+	1439	12	FSM	ENSMUSG00000029863.14	ENSMUST00000156829.8	1439	12	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_8	34.7888554397801	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGTTGGAGGCCACTGG	NA	False	NA	NA	False	NA	NA	NA	42242053	42257426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_42242132_42244432_42244584_42244827_42244996_42245140_42245223_42245819_42245915_42246213_42246391_42250850_42250980_42253628_42253720_42253803_42253865_42256710_42256861_42257017_42257128_42257279
transcript_76079.known	chr6	+	3529	11	FSM	ENSMUSG00000029863.14	ENSMUST00000031895.13	3529	11	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_8	18.1	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTGCCTGGTGTTTTTG	NA	False	NA	13	True	AATAAA	-20	NA	42241918	42259442	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_42242132_42244432_42244584_42244827_42244996_42245140_42245223_42245819_42245915_42246213_42246391_42250850_42250980_42253628_42253720_42256710_42256861_42257017_42257128_42257279
transcript_7608.known	chr10	-	388	2	FSM	ENSMUSG00000097134.3	ENSMUST00000219021.2	388	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACCAACCTCTAACTTTA	NA	False	NA	NA	False	AATAAA	-17	NA	66753518	66751414	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_66751739_66753454
transcript_76083.known	chr6	+	2605	10	FSM	ENSMUSG00000029860.17	ENSMUST00000203652.3	2605	10	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	4.64545443563708	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCACAGTCCCCTTCACTT	NA	False	NA	NA	False	ATTAAA	-17	NA	42326761	42335496	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_42327054_42327190_42327411_42327879_42328083_42328203_42328297_42328408_42328904_42332850_42332972_42333095_42333266_42333365_42333545_42334246_42334368_42334785
transcript_76084.known	chr6	-	5257	9	FSM	ENSMUSG00000036667.15	ENSMUST00000045054.11	5257	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_8	3.27633560552029	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAGAGGCTTCACATTCA	6073	False	NA	NA	False	AATAAA	-16	NA	42687022	42644935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_42647258_42650286_42650573_42651975_42652314_42653724_42653965_42654263_42654478_42655003_42655102_42655359_42656355_42663258_42663893_42686892
transcript_76087.known	chr6	-	457	3	FSM	ENSMUSG00000036667.15	ENSMUST00000141794.2	457	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTTTAGTTCTGCATTT	NA	False	NA	NA	False	TTTAAA	-5	NA	42669942	42667232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_42667458_42667970_42668127_42669866
transcript_76088.known	chr6	-	453	3	FSM	ENSMUSG00000036667.15	ENSMUST00000153952.2	453	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	1	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAGAATAAAATGAATGCT	6089	False	NA	NA	False	TTTAAA	-4	NA	42687006	42686030	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_42686261_42686462_42686572_42686892
transcript_76091.known	chr6	-	2671	9	FSM	ENSMUSG00000029735.18	ENSMUST00000067888.14	2671	9	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	3.903123748999	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAGCAATGCTGTGGTATT	NA	False	NA	-6	True	ATTAAA	-19	NA	43643212	43321934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_43323835_43400554_43400667_43445935_43446083_43465808_43465905_43500817_43500891_43536876_43536947_43588247_43588320_43642693_43642752_43643069
transcript_76098.known	chr6	-	2148	8	FSM	ENSMUSG00000029735.18	ENSMUST00000114644.8	2148	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	15.0319387862467	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAAATAGAGGAAGAAA	NA	False	NA	NA	False	NA	NA	NA	43643109	43322207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_43323835_43400554_43400667_43465808_43465905_43500817_43500891_43536876_43536947_43588247_43588320_43642693_43642752_43643069
transcript_76106.nic	chr6	-	670	4	ISM	ENSMUSG00000029735.18	ENSMUST00000114644.8	2148	8	-83	214322	20	31995	5prime_fragment	FALSE	canonical	3	40	junction_2	3.09120616516523	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCAACTGGACTCCTAGAA	NA	False	NA	NA	False	AATACA	-24	NA	43643192	43536529	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_43536947_43588247_43588320_43642693_43642752_43643069
transcript_76107.nnic	chr6	-	793	4	NNC	ENSMUSG00000029735.18	novel	2671	9	NA	NA	20	8670	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	19.09624744987	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGTCACAAGATTCTTCT	NA	False	NA	NA	False	ATTAAA	-24	NA	43643192	43559854	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_43560395_43588247_43588320_43642693_43642752_43643069
transcript_7611.known	chr10	-	5430	8	FSM	ENSMUSG00000019873.9	ENSMUST00000020023.9	5430	8	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_7	23.5068379109447	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTATTTTTTTTTCTT	NA	False	NA	1	True	AATAAA	-24	NA	66932724	66844967	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_66849566_66850680_66850827_66857527_66857673_66870377_66870492_66871663_66871785_66875279_66875357_66898777_66898851_66932568
transcript_76118.known	chr6	+	6279	4	FSM	ENSMUSG00000039419.18	ENSMUST00000199100.5	6279	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	8.01387685344754	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATTCTTTGTGTTTTATA	NA	False	NA	NA	False	AATAAA	-31	NA	47221320	47281143	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_47221484_47248073_47248314_47273652_47273734_47275348
transcript_7612.nnic	chr10	-	919	7	NNC	ENSMUSG00000019873.9	novel	5430	8	NA	NA	-11118	-2010	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_6	60.0601550299549	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATTTTCTAACCTGATG	NA	False	NA	-10	True	AATAAA	-16	NA	66884219	66849460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_66849566_66850680_66850827_66857527_66857673_66870377_66870492_66871663_66871785_66875279_66875357_66884008
transcript_76124.nic	chr6	+	3101	22	NIC	ENSMUSG00000029686.16	novel	2385	20	NA	NA	-58	1	intron_retention	FALSE	canonical	3	204	junction_1	97.2284170361992	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTACAAGTTGCATTT	NA	False	NA	9	True	AATAAA	-14	NA	47430779	47502993	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_47430964_47461677_47461979_47472000_47472176_47474154_47474323_47478101_47478153_47478632_47478724_47479360_47479525_47485159_47485323_47485906_47486038_47491728_47491837_47491912_47492020_47493408_47493458_47494035_47494168_47495098_47495217_47496069_47496147_47496581_47496714_47497726_47497820_47500011_47500060_47500137_47500221_47500632_47500739_47501450_47501565_47502487
transcript_76125.nic	chr6	+	3182	22	NIC	ENSMUSG00000029686.16	novel	2385	20	NA	NA	-59	0	intron_retention	FALSE	canonical	3	204	junction_1	97.2284170361992	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTATATTCCCATTGTCTT	NA	False	NA	19	True	AATAAA	-20	NA	47430778	47503073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_47430964_47461677_47461979_47472000_47472176_47474154_47474323_47478101_47478153_47478632_47478724_47479360_47479525_47485159_47485323_47485906_47486038_47491728_47491837_47491912_47492020_47493408_47493458_47494035_47494168_47495098_47495217_47496069_47496147_47496581_47496714_47497726_47497820_47500011_47500060_47500137_47500221_47500632_47500739_47501450_47501565_47502487
transcript_76127.known	chr6	+	3161	22	FSM	ENSMUSG00000029686.16	ENSMUST00000031697.9	3161	22	0	0	0	0	multi-exon	FALSE	canonical	3	398	junction_1	65.0983905600956	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTATATTCCCATTGTCTT	NA	False	NA	19	True	AATAAA	-20	NA	47431253	47503073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_47431418_47461677_47461979_47472000_47472176_47474154_47474323_47478101_47478153_47478632_47478724_47479360_47479525_47485159_47485323_47485906_47486038_47491728_47491837_47491912_47492020_47493408_47493458_47494035_47494168_47495098_47495217_47496069_47496147_47496581_47496714_47497726_47497820_47500011_47500060_47500137_47500221_47500632_47500739_47501450_47501565_47502487
transcript_76134.nic	chr6	+	728	2	ISM	ENSMUSG00000029686.16	ENSMUST00000152547.6	501	3	245	-213	-167	1	3prime_fragment	FALSE	canonical	3	204	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTCTTTTTCAGCAGAGG	NA	False	NA	8	True	AATAAA	-19	NA	47430670	47462112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_47430964_47461677
transcript_76135.known	chr6	+	530	2	FSM	ENSMUSG00000029686.16	ENSMUST00000143941.3	530	2	0	0	0	0	multi-exon	FALSE	canonical	3	398	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCTCTTTTTCAGCAGAG	NA	False	NA	7	True	AATAAA	-18	NA	47431321	47462111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_47431418_47461677
transcript_76137.known	chr6	-	2787	20	FSM	ENSMUSG00000029687.17	ENSMUST00000081721.13	2787	20	0	0	0	0	multi-exon	TRUE	canonical	3	406	junction_7	166.792654135859	1358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTGTTAGTATTGCATG	NA	False	NA	NA	False	AATAAA	-26	NA	47571964	47507072	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47518778_47518905_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553469_47553599_47554477_47554602_47571827
transcript_76139.known	chr6	-	2775	20	FSM	ENSMUSG00000029687.17	ENSMUST00000114618.8	2775	20	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_12	268.321921839443	1285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTGTTAGTATTGCATG	NA	False	NA	NA	False	AATAAA	-26	NA	47571964	47507072	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47518778_47518905_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528650_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553496_47553599_47554477_47554602_47571827
transcript_76154.known	chr6	-	500	3	FSM	ENSMUSG00000029687.17	ENSMUST00000203857.2	500	3	0	0	0	0	multi-exon	FALSE	canonical	3	987	junction_2	57.5	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTTTTCAAATTTGAATA	NA	False	NA	-58	True	NA	NA	NA	47509050	47507252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_47507536_47508674_47508760_47508918
transcript_76157.known	chr6	-	2399	10	FSM	ENSMUSG00000025823.10	ENSMUST00000077290.9	2399	10	0	0	0	0	multi-exon	FALSE	canonical	3	1547	junction_7	244.688060423022	548	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTTTGCCTTTTATTTT	8890	False	NA	23	True	TTTAAA	-24	NA	47790364	47773074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_47773838_47775298_47775533_47776119_47776277_47777871_47778024_47780364_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47785108_47785278_47790150
transcript_7616.nnic	chr10	-	575	3	NNC	ENSMUSG00000019873.9	novel	5430	8	NA	NA	17601	-2010	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_2	79.5	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATTTTCTAACCTGATG	NA	False	NA	-10	True	AATAAA	-16	NA	66852810	66849460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_66849566_66850680_66850827_66852486
transcript_76161.known	chr6	-	333	1	FSM	ENSMUSG00000094557.2	ENSMUST00000080603.4	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	8438	False	NA	NA	False	NA	NA	NA	47792566	47792233	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_47792200_47792600
transcript_76162.known	chr6	-	3191	4	FSM	ENSMUSG00000051499.8	ENSMUST00000058844.6	3191	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	4.64279609239471	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATATGCGTTTGGGTTTGC	5720	False	NA	-7	True	AATACA	-20	NA	47807801	47796199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_47798636_47801974_47802131_47803895_47804023_47807329
transcript_76163.known	chr6	+	2906	6	FSM	ENSMUSG00000062519.14	ENSMUST00000079881.11	2906	6	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	4.17612260356422	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAACAGGGATCATCACAT	NA	False	NA	NA	False	NA	NA	NA	47812597	47844622	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_47812855_47817185_47817582_47835862_47835990_47836352_47836467_47840037_47840152_47842724
transcript_76165.known	chr6	+	3656	2	FSM	ENSMUSG00000062519.14	ENSMUST00000146202.2	3656	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAAAAAAAAAAAAGGAGT	NA	False	NA	NA	False	NA	NA	NA	47812594	47820581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_47812855_47817185
transcript_76166.known	chr6	+	5573	8	FSM	ENSMUSG00000025821.10	ENSMUST00000061890.8	5573	8	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_5	6.34388666033558	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTCCCTTAACTTTTGG	NA	False	NA	NA	False	NA	NA	NA	47854137	47885419	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_47854771_47856933_47857354_47866999_47867127_47867537_47867658_47869788_47869909_47874748_47874863_47875827_47875942_47881494
transcript_76167.known	chr6	+	2801	5	FSM	ENSMUSG00000052763.8	ENSMUST00000009411.9	2801	5	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_4	25.1445819213603	365	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCACAGGGTGTTTTCTG	NA	False	NA	24	True	AATAAA	-31	NA	47897409	47909573	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_47897684_47903440_47903831_47903953_47904081_47905983_47906065_47907644
transcript_76169.known	chr6	+	2761	5	FSM	ENSMUSG00000045466.19	ENSMUST00000101445.11	2761	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	2.77263412660235	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCTGTCTTGCCTTGACC	9713	False	NA	18	True	AATAAA	-23	NA	47930323	47942234	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_47930517_47932750_47933105_47934409_47934537_47939458_47939567_47940255
transcript_7617.nnic	chr10	-	1847	4	NNC	ENSMUSG00000075000.12	novel	1813	4	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	81.2991731541936	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGTTGAGTATGACTTG	NA	False	NA	NA	False	AATAAA	-21	NA	67121088	67102467	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_67103946_67105884_67105926_67111348_67111434_67120845
transcript_76170.known	chr6	+	2823	5	FSM	ENSMUSG00000045466.19	ENSMUST00000140719.2	2823	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	12.1937483982572	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTCCCTGTCTTGCCTTG	9770	False	NA	15	True	AATAAA	-20	NA	47930380	47942231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_47930517_47932750_47933105_47934409_47934659_47939458_47939567_47940255
transcript_76171.known	chr6	+	577	2	FSM	ENSMUSG00000045466.19	ENSMUST00000174790.2	577	2	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGAAGTACAGTGTGACAT	9768	False	NA	NA	False	AATACA	-34	NA	47930378	47933189	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_47930517_47932750
transcript_76173.known	chr6	-	1229	2	FSM	ENSMUSG00000107875.2	ENSMUST00000181943.3	1229	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGCTTTGATTGTGGAT	NA	False	NA	NA	False	NA	NA	NA	48372342	48351069	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_48351528_48371571
transcript_76177.known	chr6	-	543	5	FSM	ENSMUSG00000068551.13	ENSMUST00000114566.8	543	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	1.78535710713571	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTAGACCGAATGTCCTTT	NA	False	NA	3	True	NA	NA	NA	48420970	48404630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_48404814_48418880_48418995_48419558_48419673_48420345_48420422_48420914
transcript_7618.known	chr10	-	1813	4	FSM	ENSMUSG00000075000.12	ENSMUST00000077839.13	1813	4	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_3	30.2691628926573	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGTTGAGTATGACTTG	NA	False	NA	NA	False	AATAAA	-21	NA	67121084	67102467	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_67103946_67105884_67105926_67111348_67111434_67120875
transcript_76181.known	chr6	-	599	5	FSM	ENSMUSG00000068551.13	ENSMUST00000101443.10	599	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2.17944947177034	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTAGACCGAATGTCCTTT	NA	False	NA	3	True	NA	NA	NA	48422398	48404630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_48404814_48418880_48418995_48419558_48419673_48420345_48420422_48422286
transcript_76189.nnic	chr6	+	2048	4	NNC	ENSMUSG00000107476.4	novel	1776	6	NA	NA	-8	-7987	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	4.96655480858378	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGGTCATGGTATCTGTT	2558	False	NA	18	True	NA	NA	NA	48481262	48493359	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_48481485_48485205_48485318_48488748_48489071_48491967
transcript_76194.known	chr6	+	333	1	FSM	ENSMUSG00000095526.3	ENSMUST00000117571.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2969	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	NA	False	NA	NA	False	NA	NA	NA	48500451	48500784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_48500500_48500800
transcript_76195.known	chr6	-	794	2	FSM	ENSMUSG00000097716.2	ENSMUST00000180937.2	794	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGGCTCTAATTTCAC	NA	False	NA	NA	False	NA	NA	NA	48514408	48513515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_48513671_48513769
transcript_76196.known	chr6	+	1789	4	FSM	ENSMUSG00000039347.8	ENSMUST00000040361.8	1789	4	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	1.24721912892465	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGCCTCTGCTCAGTT	6204	False	NA	27	True	AATAAA	-35	NA	48514548	48518735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_48514789_48516157_48516206_48516973_48517101_48517361
transcript_76197.known	chr6	+	1612	3	FSM	ENSMUSG00000039347.8	ENSMUST00000203011.2	1612	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	47	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGCCTCTGCTCAGTT	6254	False	NA	27	True	AATAAA	-35	NA	48514598	48518735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_48514789_48516157_48516206_48517361
transcript_76198.known	chr6	+	666	3	FSM	ENSMUSG00000073096.12	ENSMUST00000203627.2	666	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	6.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGAACCTGCAGAGCCT	8312	False	NA	NA	False	NA	NA	NA	48531762	48545463	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_48531896_48533888_48534029_48545070
transcript_76199.known	chr6	+	308	3	FSM	ENSMUSG00000073096.12	ENSMUST00000146245.4	308	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTCTGAACTGTCTTCAGT	8294	False	NA	NA	False	NA	NA	NA	48531744	48545155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_48531828_48533888_48534029_48545070
transcript_76200.known	chr6	+	2913	3	FSM	ENSMUSG00000073096.12	ENSMUST00000114545.8	2913	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	2.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTCTTGGTCATGGTAT	8279	False	NA	14	True	NA	NA	NA	48531729	48547656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_48531917_48533888_48534029_48545070
transcript_76202.known	chr6	-	2513	3	FSM	ENSMUSG00000009281.7	ENSMUST00000203541.3	2513	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGTGTTGTTCTCCCTCA	5144	False	NA	2	True	AATAAA	-25	NA	48549580	48546629	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_48546740_48546874_48549225_48549527
transcript_76203.known	chr6	+	2674	2	FSM	ENSMUSG00000073096.12	ENSMUST00000101436.3	2674	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGGTCTTGGTCATGGTA	8288	False	NA	13	True	NA	NA	NA	48531738	48547655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_48531828_48545070
transcript_76206.known	chr6	+	3057	3	FSM	ENSMUSG00000052751.17	ENSMUST00000135151.3	3057	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	9.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGGCTGGTGGTGTTCTTT	NA	False	NA	20	True	AATAAA	-18	NA	48570833	48576015	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_48570987_48571795_48571911_48573226
transcript_76207.known	chr6	+	3138	3	FSM	ENSMUSG00000052751.17	ENSMUST00000118229.2	3138	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTGGTGGTGTTCTTTT	NA	False	NA	21	True	AATAAA	-19	NA	48570824	48576016	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_48570987_48571724_48571911_48573226
transcript_76208.known	chr6	+	4143	3	FSM	ENSMUSG00000007216.7	ENSMUST00000204095.3	4143	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	4.5	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATGGCTTTCAGCG	NA	False	NA	NA	False	NA	NA	NA	48578996	48600161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_48579055_48590111_48590194_48596158
transcript_76209.nnic	chr6	-	754	3	NNC	ENSMUSG00000107640.2	novel	767	3	NA	NA	2142	2815	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	1	14	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTTATTCTTAATTTGG	NA	False	NA	NA	False	NA	NA	NA	48597149	48588091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_48588402_48590644_48590731_48596791
transcript_7621.known	chr10	-	4558	1	FSM	ENSMUSG00000057134.7	ENSMUST00000075686.7	4558	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTAGAAATAATGTTGCTTA	NA	False	NA	NA	False	AATAAA	-17	NA	67384898	67380340	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_67380300_67384900
transcript_76212.known	chr6	+	2959	2	FSM	ENSMUSG00000052751.17	ENSMUST00000163452.7	2959	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGGCTGGTGGTGTTCTTT	NA	False	NA	20	True	AATAAA	-18	NA	48570816	48576015	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_48570987_48573226
transcript_76213.nic	chr6	+	884	3	NIC	ENSMUSG00000051124.7	novel	663	2	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_2	22	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTGTGGCATATATGTG	1263	False	NA	NA	False	AATAAA	-20	NA	48653036	48656048	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_48653189_48654375_48654850_48655790
transcript_76214.known	chr6	+	1384	2	FSM	ENSMUSG00000051124.7	ENSMUST00000054050.5	1384	2	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	0	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTATGATTGACTTCTTG	1289	False	NA	17	True	NA	NA	NA	48653062	48655633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_48653189_48654375
transcript_76216.known	chr6	+	1804	3	FSM	ENSMUSG00000054435.17	ENSMUST00000090070.6	1804	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTAGAGCTGGAATCTGT	2054	False	NA	NA	False	AATAAA	-21	NA	48661515	48668994	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_48661558_48663771_48663844_48667304
transcript_76218.known	chr6	+	1493	3	FSM	ENSMUSG00000090019.6	ENSMUST00000054368.7	1493	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGACTGGTGGTCGTGTCG	7624	False	NA	NA	False	NA	NA	NA	48715987	48720724	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_48716091_48718253_48718352_48719432
transcript_76219.known	chr6	+	1269	2	FSM	ENSMUSG00000043931.11	ENSMUST00000052503.8	1269	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTCTGTGAGACTTTT	4186	False	NA	NA	False	NA	NA	NA	48695554	48701570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_48695636_48700382
transcript_76220.known	chr6	-	1238	8	FSM	ENSMUSG00000029810.16	ENSMUST00000101429.11	1238	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.699854212223765	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATACCCTCTCACAGAAAG	NA	False	NA	NA	False	GATAAA	-19	NA	48818051	48810763	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_48811074_48811440_48811561_48812378_48812610_48812839_48812897_48813160_48813272_48815105_48815300_48817294_48817388_48817929
transcript_76222.known	chr6	+	1540	7	FSM	ENSMUSG00000023367.15	ENSMUST00000101426.11	1540	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2.11476292340825	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATTTGTATATTTTTAAAT	NA	False	NA	NA	False	TATAAA	-27	NA	48818445	48822803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_48818524_48819137_48819336_48819522_48819634_48820718_48820776_48820894_48821114_48821601_48821713_48822037
transcript_76223.known	chr6	-	986	7	FSM	ENSMUSG00000029810.16	ENSMUST00000204073.3	986	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	0.577350269189626	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACTGTTCCCAGGGCCTCT	NA	False	NA	NA	False	NA	NA	NA	48818071	48810939	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_48811074_48811440_48811561_48812378_48812610_48812839_48812897_48813160_48813272_48815105_48815297_48817929
transcript_76224.known	chr6	-	1414	7	FSM	ENSMUSG00000029810.16	ENSMUST00000166247.8	1414	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.687184270936277	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGAAAGGTGTGGGCTCTG	NA	False	NA	NA	False	GATAAA	-31	NA	48818308	48810751	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_48811074_48811440_48811561_48812378_48812610_48812839_48812897_48813160_48813272_48815105_48815300_48817929
transcript_76227.known	chr6	+	3701	11	FSM	ENSMUSG00000029816.11	ENSMUST00000031840.10	3701	11	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_4	6.96347614342147	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCATCTCTGAGTAATTCA	NA	False	NA	NA	False	TATAAA	-13	NA	49013548	49035116	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_49013727_49019700_49019854_49020930_49021075_49022238_49022413_49024227_49024387_49024669_49025036_49027343_49027443_49027957_49028061_49028751_49028961_49032554_49032649_49033094
transcript_7623.known	chr10	+	2246	12	FSM	ENSMUSG00000037846.19	ENSMUST00000117086.2	2246	12	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_10	13.4870614459296	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAATTGTAATACTTAATAG	NA	False	NA	NA	False	AATACA	-19	NA	67815544	67878128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_67815643_67823136_67823334_67833394_67833454_67837753_67837808_67839033_67839152_67841329_67841525_67853635_67853731_67861342_67861450_67862347_67862480_67871618_67871782_67875860_67875969_67877208
transcript_76234.known	chr6	-	4345	15	FSM	ENSMUSG00000029814.11	ENSMUST00000031838.9	4345	15	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_14	48.9016610043012	558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACAGCTTCTGTAGTATGT	NA	False	NA	-24	True	AATAAA	-15	NA	49191891	49062156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_49064375_49064701_49064816_49065363_49065496_49067909_49067985_49071073_49071191_49081107_49081234_49082503_49082640_49084275_49084399_49085859_49085995_49094085_49094368_49111628_49111693_49111780_49111833_49145403_49145453_49190200_49190262_49191230
transcript_76245.nic	chr6	-	2395	10	ISM	ENSMUSG00000029814.11	ENSMUST00000031838.9	4345	15	-492	18737	-492	3440	5prime_fragment	FALSE	canonical	3	409	junction_9	39.2374852266755	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTATTTTGTTGGTTTGTCT	NA	False	NA	NA	False	AATAAA	-17	NA	49192383	49080893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_49081234_49082503_49082640_49084275_49084399_49085859_49085995_49094085_49094368_49111628_49111693_49111780_49111833_49145403_49145453_49190200_49190262_49191230
transcript_76248.nnic	chr6	-	2145	8	NIC	ENSMUSG00000029814.11	novel	4345	15	NA	NA	-473	998	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	198.819988318836	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAAGTGGGGG	NA	False	NA	NA	False	AATATA	-29	NA	49192364	49064063	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_49064375_49064701_49064816_49065363_49065496_49067909_49067985_49071073_49071191_49081107_49081234_49082503_49082640_49191230
transcript_76255.known	chr6	-	711	4	FSM	ENSMUSG00000029814.11	ENSMUST00000203680.2	711	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	219.654273803175	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTCCT	NA	False	NA	-3	True	ATTAAA	-22	NA	49191638	49144846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_49145040_49145403_49145453_49190200_49190262_49191230
transcript_76261.known	chr6	+	2587	3	FSM	ENSMUSG00000029815.13	ENSMUST00000114500.3	2587	3	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	380.5	489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAATTTTGCTTTTAACT	348	False	NA	NA	False	TATAAA	-23	NA	49050781	49063685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_49051038_49059778_49059861_49061436
transcript_76262.known	chr6	+	2819	4	FSM	ENSMUSG00000029815.13	ENSMUST00000128616.6	2819	4	0	0	0	0	multi-exon	FALSE	canonical	3	781	junction_1	29.2232783924049	2957	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAATTTTGCTTTTAACT	295	False	NA	NA	False	TATAAA	-23	NA	49050728	49063685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_49051038_49052019_49052199_49059778_49059861_49061436
transcript_76263.known	chr6	+	481	3	FSM	ENSMUSG00000029815.13	ENSMUST00000031839.12	481	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	389.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAAACAAAAAAAC	392	False	NA	NA	False	NA	NA	NA	49050825	49057063	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_49051038_49052019_49052199_49056973
transcript_76266.known	chr6	-	3788	1	FSM	ENSMUSG00000029817.12	ENSMUST00000204013.2	3788	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAAAAAAAAAAATCCAG	4593	False	NA	NA	False	AATACA	-20	NA	49240964	49237176	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_49237200_49241000
transcript_76267.known	chr6	-	1799	8	FSM	ENSMUSG00000029817.12	ENSMUST00000031841.9	1799	8	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_7	100.796420409392	690	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGGATTGTCTCTTTA	4593	False	NA	-8	True	AATAAA	-11	NA	49240964	49220861	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49240771
transcript_76268.known	chr6	-	2090	9	FSM	ENSMUSG00000029817.12	ENSMUST00000203820.3	2090	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	190.764866720788	1255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGATTGTCTCTTTATTTG	4612	False	NA	-4	True	AATAAA	-15	NA	49240945	49220857	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49229736_49230043_49240771
transcript_76272.known	chr6	+	2351	3	FSM	ENSMUSG00000050786.9	ENSMUST00000055559.8	2351	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	7.5	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGGTTATTTTTGGTTTG	NA	False	NA	15	True	AATAAA	-19	NA	49296207	49318516	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_49296415_49310844_49311232_49316759
transcript_76274.known	chr6	+	2372	4	FSM	ENSMUSG00000050786.9	ENSMUST00000114491.2	2372	4	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0.816496580927726	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACAATGGTTATTTTTGG	NA	False	NA	11	True	AATAAA	-15	NA	49296240	49318512	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_49296415_49310856_49311232_49316196_49316267_49316759
transcript_76277.nnic	chr6	+	1359	7	NNC	ENSMUSG00000047115.16	novel	2730	7	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_4	13.9483173019385	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAATACATAGGGTCAG	NA	False	NA	NA	False	ATTAAA	-7	NA	49344683	49366207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_49344908_49349501_49349676_49353037_49353229_49355329_49355443_49359896_49360014_49362306_49362390_49365750
transcript_76278.known	chr6	+	2730	7	FSM	ENSMUSG00000047115.16	ENSMUST00000060561.15	2730	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	5.75663867972351	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAATTTGGAATTGGTGT	NA	False	NA	NA	False	NA	NA	NA	49344672	49367473	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_49344908_49349501_49349676_49353037_49353229_49355329_49355537_49359896_49360014_49362306_49362390_49365750
transcript_76280.nnic	chr6	+	1283	6	NNC	ENSMUSG00000047115.16	novel	1304	6	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_4	18.0820352836731	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATAGGGTCAGATTTTTC	NA	False	NA	NA	False	ATTAAA	-14	NA	49344683	49366214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_49344908_49349501_49349676_49353037_49353229_49355329_49355443_49359896_49360014_49365750
transcript_76281.known	chr6	+	1304	6	FSM	ENSMUSG00000047115.16	ENSMUST00000121903.2	1304	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	14.4360659460949	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATAGGGTCAGATTTTTC	NA	False	NA	NA	False	ATTAAA	-14	NA	49344756	49366214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_49344908_49349501_49349676_49353037_49353229_49355329_49355537_49359896_49360014_49365750
transcript_76282.nnic	chr6	+	3286	24	NNC	ENSMUSG00000023403.15	novel	1251	10	NA	NA	-157	0	at_least_one_novel_splicesite	TRUE	canonical	2	90	junction_1	54.4319696453353	68	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAATCATTCATATTCTT	16	True	NA	NA	False	AATAAA	-21	NA	49372380	49446434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_49372512_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49394122_49394482_49396088_49396264_49398617_49398734_49400309_49400470_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
transcript_76283.known	chr6	+	3237	24	FSM	ENSMUSG00000023403.15	ENSMUST00000024171.14	3237	24	0	0	0	0	multi-exon	FALSE	canonical	2	108	junction_8	52.5929548855327	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATCATTCATATTCTTT	173	False	NA	NA	False	AATAAA	-22	NA	49372537	49446435	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49394122_49394482_49396088_49396264_49398617_49398734_49400309_49400470_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
transcript_76292.nnic	chr6	+	2660	22	NNC	ENSMUSG00000023403.15	novel	1251	10	NA	NA	-65	0	at_least_one_novel_splicesite	FALSE	canonical	2	62	junction_6	55.816430581886	78	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAATCATTCATATTCTT	108	False	NA	NA	False	AATAAA	-21	NA	49372472	49446434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_49372512_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49398617_49398734_49400309_49400470_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
transcript_76296.nnic	chr6	+	2767	22	NIC	ENSMUSG00000023403.15	novel	3237	24	NA	NA	-65	0	combination_of_known_splicesites	FALSE	canonical	2	62	junction_6	53.746739604748	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAATCATTCATATTCTT	108	False	NA	NA	False	AATAAA	-21	NA	49372472	49446434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49398617_49398734_49400309_49400470_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
transcript_76304.nnic	chr6	+	2387	20	NNC	ENSMUSG00000023403.15	novel	1251	10	NA	NA	-68	0	at_least_one_novel_splicesite	FALSE	canonical	2	62	junction_6	56.8725064900417	93	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAATCATTCATATTCTT	105	False	NA	NA	False	AATAAA	-21	NA	49372469	49446434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_49372512_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
transcript_76305.nnic	chr6	+	2491	20	NIC	ENSMUSG00000023403.15	novel	3237	24	NA	NA	-65	0	combination_of_known_splicesites	FALSE	canonical	2	62	junction_6	54.5748107857386	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAATCATTCATATTCTT	108	False	NA	NA	False	AATAAA	-21	NA	49372472	49446434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
transcript_7631.nnic	chr10	-	715	3	Antisense	novelGene_ENSMUSG00000037846.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0.5	16	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTACCAAGAGGGCCCCCA	NA	False	NA	NA	False	AATAAA	-22	NA	67880043	67877047	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr10_-_67877395_67877524_67877608_67879758
transcript_76314.nnic	chr6	+	1499	10	NNC	ENSMUSG00000023403.15	novel	3237	24	NA	NA	-83	-45618	at_least_one_novel_splicesite	FALSE	canonical	2	90	junction_1	75.6161521709205	68	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTGTTGTTTTTTACTTT	90	False	NA	NA	False	AATAAA	-18	NA	49372454	49400668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_49372512_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49394122_49394482_49396088_49396264_49398617_49398734_49400309
transcript_76315.nic	chr6	+	1588	10	ISM	ENSMUSG00000023403.15	ENSMUST00000163954.8	2988	23	-96	45618	-65	-45618	5prime_fragment	FALSE	canonical	2	108	junction_8	72.8109339231783	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTGTTGTTTTTTACTTT	108	False	NA	NA	False	AATAAA	-18	NA	49372472	49400668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49394122_49394482_49396088_49396264_49398617_49398734_49400309
transcript_76323.nnic	chr6	+	1039	8	NNC	ENSMUSG00000023403.15	novel	3237	24	NA	NA	-157	-45618	at_least_one_novel_splicesite	FALSE	canonical	2	62	junction_6	86.4121590083814	107	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTGTTGTTTTTTACTTT	16	True	NA	NA	False	AATAAA	-18	NA	49372380	49400668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_49372512_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49398617_49398734_49400309
transcript_76324.nnic	chr6	+	1054	8	NIC	ENSMUSG00000023403.15	novel	2988	23	NA	NA	-65	-45618	combination_of_known_splicesites	FALSE	canonical	2	62	junction_6	82.8418705136725	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTGTTGTTTTTTACTTT	108	False	NA	NA	False	AATAAA	-18	NA	49372472	49400668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49398617_49398734_49400309
transcript_76329.nnic	chr6	+	938	7	NIC	ENSMUSG00000023403.15	novel	2988	23	NA	NA	-65	-45618	combination_of_known_splicesites	FALSE	canonical	2	11	junction_6	102.781321260237	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTGTTGTTTTTTACTTT	108	False	NA	NA	False	AATAAA	-18	NA	49372472	49400668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49400309
transcript_76330.known	chr6	+	1251	10	FSM	ENSMUSG00000023403.15	ENSMUST00000167846.2	1251	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_8	65.6349801347113	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAATCATTCATATTCTT	NA	False	NA	NA	False	AATAAA	-21	NA	49415497	49446434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49442402_49442472_49446061
transcript_76331.known	chr6	-	746	1	FSM	ENSMUSG00000108266.2	ENSMUST00000204010.2	746	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGTCTTTAAAAGTAACAA	NA	False	NA	NA	False	NA	NA	NA	49520661	49519915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_49519900_49520700
transcript_76332.known	chr6	+	566	4	FSM	ENSMUSG00000029819.7	ENSMUST00000031843.7	566	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	0.471404520791032	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATGTTCTCAGTGAAGAAT	NA	False	NA	16	True	AATAAA	-18	NA	49799689	49806487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_49799782_49800577_49800766_49804468_49804550_49806282
transcript_76334.known	chr6	+	2161	13	FSM	ENSMUSG00000038388.15	ENSMUST00000036236.15	2161	13	0	0	0	0	multi-exon	FALSE	canonical	3	978	junction_6	79.6350617225576	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGTTCAAGCATTTTGTAA	NA	False	NA	8	True	CATAAA	-5	NA	50087228	50175567	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_50087445_50120698_50120765_50122753_50122873_50135661_50135815_50139565_50139716_50140401_50140630_50155368_50155501_50157155_50157256_50157570_50157640_50160689_50160852_50171505_50171709_50173493_50173623_50175133
transcript_7634.known	chr10	-	7581	10	FSM	ENSMUSG00000019947.11	ENSMUST00000219238.2	7581	10	0	0	0	0	multi-exon	TRUE	canonical	3	31	junction_9	46.8506953451172	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGAGTGTCTGTCTCTTAT	5326	False	NA	-4	True	AATAAA	-23	NA	68114570	67928349	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_67934500_67937724_67937924_67954080_67954179_67962528_67962582_67964618_67964824_67970823_67970937_68021855_68022087_68078833_68079060_68113759_68114015_68114519
transcript_76346.nnic	chr6	+	1749	12	NNC	ENSMUSG00000038388.15	novel	616	3	NA	NA	33729	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	331.464643540386	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATGATTCAATAAGGTTAA	NA	False	NA	NA	False	NA	NA	NA	50121568	50175307	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_50121699_50122753_50122873_50135661_50135815_50139565_50139716_50140401_50140630_50155368_50155501_50157155_50157256_50157570_50157640_50160689_50160852_50171505_50171709_50173493_50173623_50175133
transcript_76349.known	chr6	-	2133	10	FSM	ENSMUSG00000029821.16	ENSMUST00000170142.8	2133	10	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_4	6.09998988058258	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTAGTTGGCTGTTCTAT	8766	False	NA	-2	True	ATTAAA	-16	NA	50238749	50184382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_50185187_50193329_50193404_50196216_50196419_50197968_50198097_50199715_50199881_50204258_50204380_50206265_50206438_50222909_50223103_50228255_50228494_50238713
transcript_7636.known	chr10	-	3025	7	FSM	ENSMUSG00000019947.11	ENSMUST00000218532.2	3025	7	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_6	21.5303403492735	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGGGGCTGGCTTGCAA	NA	False	NA	NA	False	NA	NA	NA	67972456	67932283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_67934500_67937724_67937924_67954080_67954179_67962528_67962582_67964618_67964824_67970823_67970937_67972315
transcript_76363.known	chr6	-	1102	2	FSM	ENSMUSG00000108236.2	ENSMUST00000205236.2	1102	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTTATTTGTTTGTTTGT	NA	False	NA	NA	False	AATAAA	-16	NA	51379199	51377945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_51379014_51379165
transcript_76374.known	chr6	-	1728	12	FSM	ENSMUSG00000004980.17	ENSMUST00000114459.8	1728	12	0	0	0	0	multi-exon	FALSE	canonical	3	874	junction_11	2433.70552759395	9514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	-14	True	AATAAA	-17	NA	51446806	51439739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
transcript_76375.known	chr6	-	1647	10	FSM	ENSMUSG00000004980.17	ENSMUST00000069949.13	1647	10	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_1	2676.86493431088	4971	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGTGCACTGCTACAACT	NA	False	NA	NA	False	AATAAA	-16	NA	51446874	51437911	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_51438414_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
transcript_76376.known	chr6	-	1542	11	FSM	ENSMUSG00000004980.17	ENSMUST00000204158.3	1542	11	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_2	2968.11001312283	2153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTACTTGGTGTAATGCT	NA	False	NA	-24	True	AATAAA	-14	NA	51446825	51438103	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_51438414_51438899_51439036_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
transcript_76377.known	chr6	-	1662	12	FSM	ENSMUSG00000004980.17	ENSMUST00000090002.10	1662	12	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_2	2567.02803044511	2577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTACTTGGTGTAATGCT	NA	False	NA	-24	True	AATAAA	-14	NA	51446825	51438103	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_51438414_51438899_51439036_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
transcript_76378.known	chr6	-	1703	13	FSM	ENSMUSG00000004980.17	ENSMUST00000203954.3	1703	13	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_2	3043.32879243911	865	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	-21	True	AATAAA	-17	NA	51446827	51438100	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_51438414_51438899_51439036_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
transcript_76379.known	chr6	-	1554	2	FSM	ENSMUSG00000004980.17	ENSMUST00000204885.2	1554	2	0	0	0	0	multi-exon	FALSE	canonical	3	615	junction_1	0	544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAATACTTTTGTATC	NA	False	NA	-45	True	AATACA	-9	NA	51440164	51438124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_51438414_51438899
transcript_76380.known	chr6	-	1518	10	FSM	ENSMUSG00000004980.17	ENSMUST00000204188.3	1518	10	0	0	0	0	multi-exon	FALSE	canonical	3	933	junction_3	2022.94680547408	5169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	-14	True	AATAAA	-17	NA	51446752	51439739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
transcript_76381.known	chr6	-	766	2	FSM	ENSMUSG00000004980.17	ENSMUST00000204090.2	766	2	0	0	0	0	multi-exon	FALSE	canonical	3	7812	junction_1	0	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTACATTTATGATTTAA	NA	False	NA	-54	True	TTTAAA	-33	NA	51441140	51439779	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_51440474_51441068
transcript_76382.known	chr6	-	1638	11	FSM	ENSMUSG00000004980.17	ENSMUST00000203220.3	1638	11	0	0	0	0	multi-exon	FALSE	canonical	3	5712	junction_10	720.046137410652	8837	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	-14	True	AATAAA	-17	NA	51446752	51439739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
transcript_76383.known	chr6	-	596	4	FSM	ENSMUSG00000004980.17	ENSMUST00000203655.2	596	4	0	0	0	0	multi-exon	FALSE	canonical	3	6241	junction_2	120.439011767598	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGTGAGTTTCATCTCAT	NA	False	NA	NA	False	NA	NA	NA	51443647	51441981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_51442222_51443121_51443203_51443282_51443385_51443474
transcript_76385.known	chr6	+	1080	6	FSM	ENSMUSG00000029836.16	ENSMUST00000094623.10	1080	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	932.93077985454	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTTTTGTTTTTAACT	NA	False	NA	NA	False	CATAAA	-16	NA	51447339	51460013	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_51447412_51448795_51448849_51452210_51452354_51455417_51455581_51458703_51458799_51459459
transcript_76388.known	chr6	+	1719	6	FSM	ENSMUSG00000029836.16	ENSMUST00000114446.8	1719	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	927.333381260483	1505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGACTTTTTTTTGTC	NA	False	NA	-1	True	AATAAA	-19	NA	51447674	51460684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_51447715_51448795_51448849_51452210_51452354_51455417_51455581_51458703_51458799_51459459
transcript_76393.known	chr6	+	1585	5	FSM	ENSMUSG00000029836.16	ENSMUST00000114445.8	1585	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	1009.62873745749	358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGACTTTTTTTTGTC	NA	False	NA	-1	True	AATAAA	-19	NA	51447645	51460684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_51447715_51448795_51448849_51452210_51452354_51458703_51458799_51459459
transcript_7640.nic	chr10	-	1499	6	ISM	ENSMUSG00000019947.11	ENSMUST00000218532.2	3025	7	-723	5474	-723	-5474	5prime_fragment	FALSE	canonical	3	87	junction_5	23.2292918531754	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAACACCCCCAAACCCCA	NA	False	NA	NA	False	AAGAAA	-7	NA	67973179	67937757	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_67937924_67954080_67954179_67962528_67962582_67964618_67964824_67970823_67970937_67972315
transcript_76401.known	chr6	+	308	2	FSM	ENSMUSG00000029836.16	ENSMUST00000153699.2	308	2	0	0	0	0	multi-exon	FALSE	canonical	3	2485	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGGTGGACATGGTTGT	NA	False	NA	NA	False	NA	NA	NA	51447656	51449040	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_51447720_51448795
transcript_76405.known	chr6	+	2480	7	FSM	ENSMUSG00000038301.16	ENSMUST00000049152.15	2480	7	0	0	0	0	multi-exon	FALSE	canonical	3	298	junction_5	39.9433626804532	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTTCGATTTCTTACTT	NA	False	NA	NA	False	ATTAAA	-24	NA	51500880	51567659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_51501015_51538997_51539045_51552882_51552970_51556829_51556931_51557281_51557381_51565195_51565409_51565860
transcript_76408.known	chr6	+	968	7	FSM	ENSMUSG00000038301.16	ENSMUST00000114439.8	968	7	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	127.070081276261	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTTAAAGTGGTGGGGT	NA	False	NA	NA	False	AATAGA	-39	NA	51521503	51566052	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_51521733_51538997_51539045_51552882_51552970_51556829_51556931_51557281_51557381_51565195_51565409_51565860
transcript_76411.known	chr6	+	2464	7	FSM	ENSMUSG00000038301.16	ENSMUST00000179365.8	2464	7	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	112.931272118144	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAAAACTTTGTTCGAT	NA	False	NA	NA	False	ATTAAA	-15	NA	51521502	51567650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_51521630_51538997_51539045_51552882_51552970_51556829_51556931_51557281_51557381_51565195_51565409_51565860
transcript_76414.known	chr6	-	1583	13	FSM	ENSMUSG00000059182.9	ENSMUST00000078214.8	1583	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	147.952390052416	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATGACTTAGCCTGGTA	862	False	NA	-7	True	AATAAA	-18	NA	51989495	51836145	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_51836551_51836978_51837080_51851454_51851568_51856750_51856829_51884866_51885002_51885348_51885413_51886279_51886405_51898259_51898344_51899242_51899321_51972996_51973105_51980060_51980087_51980629_51980715_51989314
transcript_7642.nic	chr10	-	721	3	ISM	ENSMUSG00000019947.11	ENSMUST00000218532.2	3025	7	-301	32374	-301	-32374	5prime_fragment	FALSE	canonical	3	87	junction_2	21.5	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCCATCGAGCGAATTCCC	NA	False	NA	NA	False	TATAAA	-20	NA	67972757	67964657	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_67964824_67970823_67970937_67972315
transcript_76421.known	chr6	-	3382	13	FSM	ENSMUSG00000059182.9	ENSMUST00000204778.3	3382	13	0	0	0	0	multi-exon	FALSE	canonical	3	457	junction_9	27.4919180043073	966	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTTATGATGCTAATAATT	828	False	NA	-5	True	AATAAA	-18	NA	51989529	51834401	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_51836551_51836978_51837080_51851454_51851568_51856750_51856829_51884866_51885002_51885348_51885413_51886279_51886405_51898259_51898344_51899242_51899321_51972996_51973105_51980060_51980087_51980629_51980736_51989314
transcript_7644.known	chr10	+	2231	2	FSM	ENSMUSG00000112275.2	ENSMUST00000218333.2	2231	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTGTTGTGTGTTCTGT	NA	False	NA	NA	False	AATAAA	-20	NA	68148837	68162808	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_68149041_68160780
transcript_76448.nnic	chr6	+	700	5	NNC	ENSMUSG00000085412.8	novel	391	3	NA	NA	-42	52	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	55.1106840821269	105	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAGAAAGAAAGAAAGAAG	736	False	NA	NA	False	NA	NA	NA	52079886	52089560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_52080017_52082951_52083012_52083344_52083500_52083750_52083877_52089331
transcript_76449.nnic	chr6	+	1188	5	NNC	ENSMUSG00000085412.8	novel	391	3	NA	NA	-42	540	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	55.1106840821269	451	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTACACAACTAAGATCCA	736	False	NA	NA	False	AATAAA	-20	NA	52079886	52090048	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_52080017_52082951_52083012_52083344_52083500_52083750_52083877_52089331
transcript_7645.known	chr10	-	1262	8	FSM	ENSMUSG00000019945.11	ENSMUST00000020103.9	1262	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.349927106111883	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAAACCAGCCTTTTGAA	NA	False	NA	NA	False	AATAAA	-21	NA	68377726	68266782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_68267154_68272109_68272251_68272672_68272796_68345526_68345600_68352095_68352241_68361427_68361598_68369641_68369731_68377576
transcript_76467.nnic	chr6	+	1033	4	NNC	ENSMUSG00000085412.8	novel	391	3	NA	NA	-42	540	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	63.3368420080726	353	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTACACAACTAAGATCCA	736	False	NA	NA	False	AATAAA	-20	NA	52079886	52090048	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_52080017_52082951_52083012_52083750_52083877_52089331
transcript_76480.known	chr6	+	391	3	FSM	ENSMUSG00000085412.8	ENSMUST00000125374.8	391	3	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_2	38	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAGAAAGAAAGAAAGAA	778	False	NA	NA	False	NA	NA	NA	52079928	52089508	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_52080017_52083750_52083877_52089331
transcript_76481.known	chr6	+	511	3	FSM	ENSMUSG00000085412.8	ENSMUST00000189071.7	511	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	103.5	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGCCCCGATCGAATGGAA	823	False	NA	NA	False	AAAAAG	-27	NA	52079973	52090664	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_52080017_52083750_52083877_52090322
transcript_76483.nnic	chr6	+	570	3	NNC	ENSMUSG00000087658.3	novel	713	3	NA	NA	-69	46	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_2	1.5	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCGTTATTGACCTAGAAA	NA	False	NA	6	True	AATAAA	-15	NA	52135342	52139046	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_52135667_52137680_52137791_52138910
transcript_76484.nnic	chr6	+	803	3	Fusion	ENSMUSG00002075580.1_ENSMUSG00000087658.3	novel	713	3	NA	NA	-69	32	multi-exon	FALSE	canonical	3	6	junction_2	1.5	31	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGTCTTGCCAGAA	NA	False	NA	NA	False	NA	NA	NA	52135342	52139279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr6_+_52135667_52137680_52137791_52138910
transcript_76487.known	chr6	-	2043	3	FSM	ENSMUSG00000029844.10	ENSMUST00000120363.2	2043	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	5.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGTATGCCTAAGCATCTT	NA	False	NA	-11	True	AATAAA	-14	NA	52135297	52132574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_52134070_52134546_52134642_52134844
transcript_76488.known	chr6	-	2251	2	FSM	ENSMUSG00000029844.10	ENSMUST00000000964.6	2251	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCTAAGCATCTTGTGTA	NA	False	NA	-6	True	AATAAA	-19	NA	52135297	52132569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_52134070_52134546
transcript_76489.known	chr6	+	713	3	FSM	ENSMUSG00000087658.3	ENSMUST00000132559.2	713	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTCGTCCTAGAACTGGAA	NA	False	NA	59	True	NA	NA	NA	52135411	52139099	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_52135667_52138218_52138488_52138910
transcript_76490.known	chr6	+	253	2	FSM	ENSMUSG00000087658.3	ENSMUST00000159006.2	253	2	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGATGTTTGAAACAAATG	NA	False	NA	-40	True	NA	NA	NA	52135503	52139000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_52135667_52138910
transcript_76492.known	chr6	+	143	1	FSM	ENSMUSG00002075580.1	ENSMUST00020182533.1	143	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCTTAGGGGGGAAAAATC	NA	False	NA	NA	False	NA	NA	NA	52139104	52139247	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_52139100_52139200
transcript_76494.known	chr6	+	552	2	FSM	ENSMUSG00000087626.2	ENSMUST00000133723.2	552	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTAAAAGTCTCTTATTTA	NA	False	NA	NA	False	AGTAAA	-22	NA	52149860	52151039	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_52149989_52150615
transcript_76495.known	chr6	-	1877	2	FSM	ENSMUSG00000038253.7	ENSMUST00000048794.7	1877	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTTTCTGCTTTTCTGT	9821	False	NA	NA	False	NA	NA	NA	52181567	52178733	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_52179812_52180768
transcript_76496.known	chr6	-	2009	2	FSM	ENSMUSG00000038236.9	ENSMUST00000048715.9	2009	2	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAACACGGACTGCTTT	9954	False	NA	NA	False	AATAAA	-14	NA	52194485	52191477	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_52193011_52194009
transcript_76497.known	chr6	-	851	3	FSM	ENSMUSG00000038227.16	ENSMUST00000114425.3	851	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	1	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTCATCTCCCCACTGGC	9733	False	NA	NA	False	GGGGCT	-11	NA	52203169	52201100	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_52201463_52202507_52202598_52202770
transcript_76498.known	chr6	-	3226	2	FSM	ENSMUSG00000038227.16	ENSMUST00000048680.8	3226	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACGTTGTGCGGCTCTGCT	8981	False	NA	NA	False	AATAAA	-15	NA	52204350	52200079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_52201463_52202507
transcript_76499.known	chr6	-	2565	2	FSM	ENSMUSG00000000938.12	ENSMUST00000125581.2	2565	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTTAATTTCACCTCTT	9663	False	NA	-13	True	AATAAA	-15	NA	52211919	52208176	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_52209761_52210938
transcript_76500.known	chr6	-	1436	2	FSM	ENSMUSG00000000938.12	ENSMUST00000121043.2	1436	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGACCTGGCTGGTTGAAA	8346	False	NA	NA	False	NA	NA	NA	52217834	52208901	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_52209761_52217257
transcript_76501.known	chr6	-	1045	2	FSM	ENSMUSG00000000938.12	ENSMUST00000142611.2	1045	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGTCAATGGTGCAAGGA	8405	False	NA	NA	False	NA	NA	NA	52217775	52209061	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_52209761_52217429
transcript_76502.known	chr6	+	1116	3	FSM	ENSMUSG00000086427.9	ENSMUST00000147174.3	1116	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTGATTTTCCTTGCA	5309	False	NA	NA	False	AATAAA	-21	NA	52222948	52226775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_52223181_52223616_52223789_52226063
transcript_76503.known	chr6	-	213	1	FSM	ENSMUSG00000059159.7	ENSMUST00000118230.2	213	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9632	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGCCCTCTGCGTGTGAC	NA	False	NA	NA	False	NA	NA	NA	52323927	52323714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_52323700_52323900
transcript_76505.known	chr6	-	1825	8	FSM	ENSMUSG00000029776.12	ENSMUST00000031788.9	1825	8	0	0	0	0	multi-exon	FALSE	canonical	3	833	junction_5	85.7178570684555	2229	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGGAGCTTTTTGTTTT	2839	False	NA	-1	True	AATAAA	-20	NA	52617374	52523212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_52524048_52525799_52525957_52533422_52533500_52534763_52534898_52596961_52597084_52599835_52599946_52607173_52607335_52617145
transcript_76507.known	chr6	+	3285	18	FSM	ENSMUSG00000004535.13	ENSMUST00000080723.11	3285	18	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_12	67.9651854701079	1182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACCTTTGTAAATGATTCG	NA	False	NA	NA	False	AATAAA	-27	NA	52690713	52743765	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_52690841_52698282_52698452_52704183_52704287_52706265_52706454_52710175_52710335_52713834_52713984_52714066_52714158_52716528_52716715_52718935_52719161_52719676_52719824_52721206_52721340_52723654_52723756_52728069_52728196_52730289_52730362_52734538_52734714_52735197_52735341_52742005_52742089_52742857
transcript_76512.known	chr6	+	2628	4	FSM	ENSMUSG00000004535.13	ENSMUST00000128173.2	2628	4	0	0	0	0	multi-exon	FALSE	canonical	3	617	junction_3	47.3380279362046	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATCGTTACATTCAG	NA	False	NA	NA	False	CATAAA	-15	NA	52690747	52708528	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_52690841_52698282_52698452_52704183_52704287_52706265
transcript_76520.nnic	chr6	+	684	5	NNC	ENSMUSG00000108175.2	novel	2065	5	NA	NA	26161	-9170	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	6.80073525436772	41	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTCTTGTTCTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	53821888	53835998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_53822096_53828082_53828119_53834180_53834359_53835502_53835591_53835823
transcript_76523.nnic	chr6	+	663	4	NNC	ENSMUSG00000108175.2	novel	2065	5	NA	NA	26146	-9170	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	8.60232526704263	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTCTTGTTCTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	53821873	53835998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_53822096_53834180_53834359_53835502_53835591_53835823
transcript_76525.nnic	chr6	+	596	4	NNC	ENSMUSG00000108175.2	novel	2065	5	NA	NA	26161	-9170	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_3	4.02768199119819	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTCTTGTTCTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	53821888	53835998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_53822096_53828082_53828119_53834180_53834359_53835823
transcript_76528.nnic	chr6	+	575	3	NNC	ENSMUSG00000108175.2	novel	2065	5	NA	NA	26146	-9170	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_2	2	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTCTTGTTCTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	53821873	53835998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_53822096_53834180_53834359_53835823
transcript_76529.nnic	chr6	-	1564	12	NNC	ENSMUSG00000052955.6	novel	1511	13	NA	NA	10369	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	2.01235851101624	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGACCTTTTGAATGACA	NA	False	NA	NA	False	AATAAA	-15	NA	53945278	53850263	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_53850510_53873408_53873592_53902117_53902292_53903794_53903894_53908891_53909024_53909396_53909520_53924703_53924771_53929514_53929595_53930488_53930548_53931494_53931610_53944740_53944860_53945111
transcript_7654.known	chr10	-	4375	8	FSM	ENSMUSG00000019942.14	ENSMUST00000020099.13	4375	8	0	0	0	0	multi-exon	TRUE	canonical	3	2056	junction_1	102.156542539739	3795	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGACTTAAGCAGATGTTT	NA	False	NA	4	True	AATAAA	-23	NA	69188768	69170975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_69174427_69176310_69176453_69176544_69176709_69178369_69178541_69180890_69181015_69181904_69182062_69185925_69185989_69188665
transcript_76543.known	chr6	-	4810	8	FSM	ENSMUSG00000019124.11	ENSMUST00000019268.11	4810	8	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	7.92824967172092	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGGAGCCTCTTGTTTGT	NA	False	NA	0	True	AATAAA	-17	NA	54543474	54482874	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_54486348_54489033_54489215_54497684_54497851_54499744_54499940_54502493_54502697_54511397_54511580_54525208_54525369_54543224
transcript_76545.nic	chr6	+	881	5	ISM	ENSMUSG00000086040.9	ENSMUST00000172046.2	4204	8	32649	2598	-2374	-2595	3prime_fragment	FALSE	canonical	0	0	junction_1	1.08972473588517	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCATTTTAGTCAGCTTT	2242	False	NA	NA	False	NA	NA	NA	54462516	54478155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_54462918_54464892_54465016_54465992_54466095_54473464_54473542_54477977
transcript_76548.known	chr6	+	6739	14	FSM	ENSMUSG00000005225.16	ENSMUST00000119706.8	6739	14	0	0	0	0	multi-exon	FALSE	canonical	1	70	junction_3	58.2353925611012	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTGGGTTTTGCTTAAC	NA	False	NA	32	True	AATAAA	-42	NA	54572095	54622824	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_54572457_54590076_54590194_54592199_54592356_54593617_54593743_54596178_54596338_54597256_54597298_54599105_54599264_54601059_54601217_54601537_54601624_54605830_54605890_54606804_54606936_54607488_54607560_54612694_54612757_54617768
transcript_76550.known	chr6	-	2694	4	FSM	ENSMUSG00000038074.17	ENSMUST00000046520.13	2694	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	2.16024689946929	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTTTGTACATGTGCATA	NA	False	NA	0	True	AATAAA	-19	NA	54570162	54554588	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_54556672_54562787_54562916_54566257_54566410_54569831
transcript_76552.nic	chr6	-	821	4	NIC	ENSMUSG00000038074.17	novel	754	2	NA	NA	-59	-105	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	8.9566858950296	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGACCCTGCTTTGATTTC	NA	False	NA	NA	False	AATAGA	-22	NA	54570221	54559803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_54559955_54562787_54562916_54566257_54566410_54569831
transcript_76553.known	chr6	+	5303	3	FSM	ENSMUSG00000038065.14	ENSMUST00000190641.7	5303	3	0	0	0	0	multi-exon	TRUE	canonical	3	54	junction_2	0.5	184	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTATTTGTCGTCTTTACTC	NA	False	NA	7	True	ATTAAA	-19	NA	54658608	54680836	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_54658917_54665990_54666114_54675964
transcript_76556.nnic	chr6	+	1751	6	NNC	ENSMUSG00000058446.15	novel	5886	5	NA	NA	7337	-3766	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	312.74232204804	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCTAATGGTTAAGAATAC	NA	False	NA	14	True	AATAAA	-16	NA	54801769	54866719	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_54801890_54840219_54840288_54840884_54840981_54855333_54855440_54861749_54861832_54865440
transcript_76557.known	chr6	+	5886	5	FSM	ENSMUSG00000058446.15	ENSMUST00000079869.13	5886	5	0	0	0	0	multi-exon	FALSE	canonical	3	557	junction_1	47.955057084733	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTCCTGTTCTTTAGAAG	NA	False	NA	16	True	AATAAA	-26	NA	54793900	54870485	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_54794458_54840884_54840981_54855333_54855440_54861749_54861832_54865440
transcript_76565.nnic	chr6	+	1725	5	NNC	ENSMUSG00000058446.15	novel	5886	5	NA	NA	7295	-3766	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	273.671792481432	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCTAATGGTTAAGAATAC	NA	False	NA	14	True	AATAAA	-16	NA	54801727	54866719	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_54801890_54840884_54840981_54855333_54855440_54861749_54861832_54865440
transcript_76570.known	chr6	-	686	4	FSM	ENSMUSG00000002797.10	ENSMUST00000002874.8	686	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	68.8524993494547	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGGCCGTGGGTTCTCCT	2943	False	NA	-2	True	ATTAAA	-32	NA	54969692	54962632	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_54962987_54963817_54963954_54966484_54966543_54969554
transcript_76572.known	chr6	+	2380	17	FSM	ENSMUSG00000029777.11	ENSMUST00000003572.10	2380	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	747.261037786495	1151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATCTGTTGTGTTTCCAT	NA	False	NA	35	True	ATTAAA	-29	NA	55014991	55056485	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_55015219_55023398_55023501_55025051_55025155_55027304_55027447_55029160_55029250_55030113_55030191_55032734_55032881_55037893_55038044_55040075_55040239_55042432_55042598_55045045_55045154_55046325_55046472_55050323_55050410_55052366_55052477_55053939_55054034_55054567_55054759_55056204
transcript_76583.known	chr6	-	1077	3	FSM	ENSMUSG00000003477.6	ENSMUST00000003569.6	1077	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTCTTGGGATGCCTTC	NA	False	NA	NA	False	AATAAA	-15	NA	55152028	55147610	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_55148263_55150270_55150479_55151811
transcript_76584.known	chr6	+	4270	18	FSM	ENSMUSG00000038022.12	ENSMUST00000053094.8	4270	18	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_8	4.83570915636814	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACATGTGTGCTAAGGGTC	NA	False	NA	NA	False	ATTAAA	-16	NA	55180367	55297207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_55180555_55188234_55188355_55193491_55193728_55195206_55195454_55200982_55201354_55232595_55232652_55237519_55237627_55239703_55239821_55240760_55240850_55253538_55253641_55255031_55255096_55256069_55256136_55261730_55261799_55274672_55274737_55277927_55278090_55285139_55285321_55286246_55286320_55295247
transcript_76585.known	chr6	-	329	3	FSM	ENSMUSG00000004347.18	ENSMUST00000203689.2	329	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTTGCCTTCTTTATCT	NA	False	NA	NA	False	ATTAAA	-18	NA	56346589	56321988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_56322138_56338729_56338846_56346525
transcript_76596.known	chr6	-	494	5	FSM	ENSMUSG00000091625.9	ENSMUST00000170382.5	494	5	0	0	0	0	multi-exon	TRUE	canonical	3	1056	junction_2	222.021395365402	6190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGATTTGATTTATTATG	NA	False	NA	NA	False	AATAAA	-16	NA	56681677	56678047	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_56678275_56679080_56679154_56679990_56680019_56680298_56680395_56681607
transcript_76599.known	chr6	-	416	4	FSM	ENSMUSG00000091625.9	ENSMUST00000203958.2	416	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	641.947211398431	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGATTTGATTTATTATG	NA	False	NA	NA	False	AATAAA	-16	NA	56681695	56678047	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_56678275_56679080_56679154_56679990_56680019_56681607
transcript_76600.known	chr6	-	757	4	FSM	ENSMUSG00000091625.9	ENSMUST00000175865.6	757	4	0	0	0	0	multi-exon	FALSE	canonical	3	1056	junction_2	255.422525762053	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGATTTGATTTATTA	NA	False	NA	NA	False	AATAAA	-14	NA	56681662	56678049	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_56678275_56679080_56679154_56679990_56680395_56681607
transcript_76602.known	chr6	-	274	4	FSM	ENSMUSG00000091625.9	ENSMUST00000176595.3	274	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	741.839755083416	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGACGTTGTTTTCAAACCTT	NA	False	NA	NA	False	NA	NA	NA	56681668	56678230	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_56678275_56679080_56679154_56680298_56680395_56681607
transcript_76606.known	chr6	+	6670	16	FSM	ENSMUSG00000029787.11	ENSMUST00000031805.11	6670	16	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_4	11.3247025960459	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGGGCTATTGATCTCCTA	NA	False	NA	43	True	AATAAA	-21	NA	56691911	56738897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_56692200_56700460_56700582_56702060_56702147_56703235_56703308_56705172_56705263_56705581_56705649_56706704_56706746_56707626_56707666_56712347_56712418_56713422_56713962_56718353_56718489_56720316_56720537_56723265_56723384_56730349_56730404_56730822_56730912_56734256
transcript_76611.known	chr6	+	1414	1	FSM	ENSMUSG00000029787.11	ENSMUST00000205188.2	1414	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGATTGCT	NA	False	NA	NA	False	AGTAAA	-26	NA	56691883	56693297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_56691900_56693300
transcript_76612.known	chr6	-	3816	4	FSM	ENSMUSG00000059486.12	ENSMUST00000114323.8	3816	4	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_3	4.02768199119819	126	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTTGGTTTTTTGGTTTT	9703	False	NA	0	True	AATAAA	-17	NA	56774721	56754508	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_56757399_56758785_56758952_56766203_56766686_56774443
transcript_76617.known	chr6	+	3009	10	FSM	ENSMUSG00000029781.8	ENSMUST00000031795.8	3009	10	0	0	0	0	multi-exon	FALSE	canonical	3	670	junction_6	57.9369602069757	2290	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCTGGCTTTATGGTATT	NA	False	NA	36	True	CATAAA	-14	NA	56809043	56856343	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_56809413_56826622_56826769_56827547_56827738_56828346_56828493_56833217_56833408_56837640_56837787_56845704_56845892_56850351_56850498_56852653_56852818_56855018
transcript_76623.known	chr6	-	1519	10	FSM	ENSMUSG00000029780.15	ENSMUST00000101367.9	1519	10	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_9	89.8419737478734	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTTGTCCAGATCATAT	9834	False	NA	0	True	AATAAA	-26	NA	56878871	56859384	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_56860044_56860659_56860861_56861693_56861857_56863648_56863739_56865307_56865394_56866447_56866495_56868476_56868547_56869774_56869874_56874759_56874815_56878822
transcript_76624.known	chr6	-	1067	10	FSM	ENSMUSG00000029780.15	ENSMUST00000152447.9	1067	10	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_9	88.9986821930458	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCGTGAGAAGACTTCCCC	1317	False	NA	NA	False	TATAAA	-6	NA	56900804	56859935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_56860044_56860659_56860861_56861693_56861857_56863648_56863739_56865307_56865394_56866447_56866495_56868476_56868547_56869774_56869874_56874759_56874815_56900656
transcript_76629.known	chr6	-	1125	10	FSM	ENSMUSG00000029780.15	ENSMUST00000135558.8	1125	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	94.7356295496728	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTCAATTTTACAGAAGAC	1260	False	NA	NA	False	AGTAAA	-23	NA	56900861	56859968	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_56860044_56860659_56860861_56861693_56861857_56863648_56863739_56865307_56865394_56866447_56866495_56868476_56868547_56869774_56869874_56890790_56890880_56900656
transcript_76633.known	chr6	-	1676	9	FSM	ENSMUSG00000029780.15	ENSMUST00000031793.8	1676	9	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_8	16.5486970786222	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTTGTCCAGATCATAT	1204	False	NA	0	True	AATAAA	-26	NA	56900917	56859384	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_56860044_56860659_56860861_56861693_56861857_56863648_56863739_56865307_56865394_56866447_56866495_56868476_56868547_56869774_56869874_56900656
transcript_7664.known	chr10	+	3825	19	FSM	ENSMUSG00000069601.15	ENSMUST00000182029.8	3825	19	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_18	22.7009544586419	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGAATGCAGATGTATATA	NA	False	NA	15	True	AATAAA	-20	NA	69761634	69851635	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_69762022_69763524_69763649_69768223_69768327_69786781_69786889_69791755_69791981_69794747_69794903_69809551_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147_69815274_69816101_69816225_69817945_69818028_69830201_69830277_69833924_69834057_69835184_69835329_69837752_69838432_69840439_69840822_69851400
transcript_76643.nnic	chr6	+	301	3	NNC	ENSMUSG00000029798.12	novel	4767	23	NA	NA	27005	-17466	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	2.5	18	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATGGTATGTATGTTTTC	5001	False	NA	NA	False	ATTAAA	-28	NA	57614815	57624151	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_57614910_57623111_57623217_57624049
transcript_76647.known	chr6	+	2509	9	FSM	ENSMUSG00000062190.13	ENSMUST00000050077.15	2509	9	0	0	0	0	multi-exon	TRUE	canonical	3	58	junction_1	7.80924932371864	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTATCCATAGCCCTTCA	NA	False	NA	NA	False	TATAAA	-25	NA	57679620	57715467	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_57680249_57689972_57690091_57699481_57699690_57700473_57700622_57701530_57701678_57703401_57703585_57709180_57709358_57711001_57711075_57714640
transcript_76655.known	chr6	+	438	1	FSM	ENSMUSG00000071419.8	ENSMUST00000121788.2	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4041	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGAGGCCAATAAAGACTGG	NA	False	NA	-20	True	NA	NA	NA	57994490	57994928	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_57994500_57994900
transcript_76658.nnic	chr6	+	2273	17	NNC	ENSMUSG00000029802.14	novel	5717	16	NA	NA	-78	-62	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	52.4486355875918	54	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCCAGTGTTCTTTTCTTC	NA	False	NA	14	True	ATTAAA	-21	NA	58572881	58669434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_58573003_58573993_58574094_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
transcript_7666.known	chr10	+	630	4	FSM	ENSMUSG00000048701.14	ENSMUST00000156001.8	630	4	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	11.5758369027902	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAGGAAAT	4611	False	NA	NA	False	NA	NA	NA	70010840	70024003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_70010998_70017989_70018091_70023520_70023646_70023756
transcript_76666.nic	chr6	+	2247	17	NIC	ENSMUSG00000029802.14	novel	2178	16	NA	NA	-30	-62	combination_of_known_junctions	FALSE	canonical	2	10	junction_1	58.2246457696395	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCCAGTGTTCTTTTCTTC	NA	False	NA	14	True	ATTAAA	-21	NA	58617500	58669434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_58617613_58627445_58627529_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
transcript_76668.nnic	chr6	+	2146	16	NIC	ENSMUSG00000029802.14	novel	600	5	NA	NA	-51	-62	combination_of_known_splicesites	FALSE	canonical	3	18	junction_1	43.6165106353087	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCCAGTGTTCTTTTCTTC	NA	False	NA	14	True	ATTAAA	-21	NA	58572908	58669434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_58573003_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
transcript_76669.known	chr6	+	5717	16	FSM	ENSMUSG00000029802.14	ENSMUST00000031822.13	5717	16	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	36.1961323900773	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTGTCTGTTTGCAG	NA	False	NA	NA	False	NA	NA	NA	58573655	58672661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_58574094_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
transcript_7667.known	chr10	+	3756	6	FSM	ENSMUSG00000037762.7	ENSMUST00000046807.7	3756	6	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	10.3846039885977	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCTTGTTTTCGTCAATA	NA	False	NA	22	True	AATAAA	-30	NA	70080929	70121798	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_70081209_70091789_70092023_70102921_70103066_70110755_70110852_70118118_70119028_70119703
transcript_76673.known	chr6	+	2178	16	FSM	ENSMUSG00000029802.14	ENSMUST00000114294.8	2178	16	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	24.9849732617205	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACATTATCTGTCACAT	NA	False	NA	76	True	NA	NA	NA	58617548	58669496	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_58617613_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
transcript_76685.known	chr6	+	701	4	FSM	ENSMUSG00000029802.14	ENSMUST00000124542.2	701	4	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	32.7651576458218	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATATGTTTACCCATCCTT	NA	False	NA	NA	False	NA	NA	NA	58617530	58641768	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_58617613_58632622_58632842_58640598_58640659_58641428
transcript_76686.known	chr6	-	5786	18	FSM	ENSMUSG00000037709.14	ENSMUST00000089860.12	5786	18	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_14	2.83331637148054	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAACAGAA	NA	False	NA	NA	False	NA	NA	NA	59001534	58909074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_58912697_58916280_58916383_58917105_58917303_58921105_58921190_58923024_58923121_58930434_58930519_58931186_58931408_58932200_58932283_58933021_58933161_58933638_58933844_58942045_58942194_58950139_58950183_58951015_58951093_58960873_58961061_58964140_58964318_58966728_58966771_58980449_58980492_59001296
transcript_76687.known	chr6	+	3007	2	FSM	ENSMUSG00000049232.4	ENSMUST00000062626.4	3007	2	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	0	463	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGATGACTTTTTCTGAA	NA	False	NA	9	True	NA	NA	NA	59185854	59189018	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_59186167_59186323
transcript_7669.known	chr10	+	3310	14	FSM	ENSMUSG00000043259.16	ENSMUST00000173042.9	3310	14	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_7	7.58072922754149	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATGTTGAAAGCACAGTAA	9898	False	NA	NA	False	AATAAA	-21	NA	70276709	70394566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_70276906_70284587_70284645_70286856_70287059_70312983_70313103_70334715_70334780_70356607_70356756_70370513_70370725_70372195_70372335_70378473_70378556_70380157_70380361_70387524_70387621_70388861_70389056_70390317_70390420_70393069
transcript_76692.known	chr6	-	1280	6	FSM	ENSMUSG00000025889.14	ENSMUST00000114268.5	1280	6	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_1	4.2614551505325	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATCTTTCCTGGTTCCTT	7574	False	NA	-6	True	AATAAA	-20	NA	60805988	60708562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_60709146_60710087_60710172_60792600_60792744_60795307_60795350_60804464_60804612_60805707
transcript_76693.known	chr6	-	1188	6	FSM	ENSMUSG00000025889.14	ENSMUST00000163779.8	1188	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	6.34350061086148	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCCTGGTTCCTTTTAC	6723	False	NA	-2	True	AATAAA	-24	NA	60806839	60708558	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_60709146_60710087_60710172_60792600_60792744_60795307_60795350_60804464_60804612_60806654
transcript_76694.known	chr6	-	1407	4	FSM	ENSMUSG00000025889.14	ENSMUST00000203177.2	1407	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	3.68178700572909	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTTTTGAGTATGTTAT	7706	False	NA	NA	False	NA	NA	NA	60805856	60791674	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_60792744_60795307_60795350_60804464_60804612_60805707
transcript_76702.known	chr6	+	5168	24	FSM	ENSMUSG00000029920.10	ENSMUST00000031984.9	5168	24	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_1	41.9367603834104	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTTTGTAATGGTTTTT	1727	False	NA	28	True	AATAAA	-30	NA	65019592	65093045	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_65019946_65020189_65020430_65029603_65029782_65033386_65033553_65035049_65035117_65044030_65044123_65048968_65049071_65050177_65050260_65051745_65052135_65060787_65060988_65067079_65067171_65069478_65069579_65071114_65071175_65071273_65071350_65073014_65073151_65073673_65073812_65075593_65075690_65075779_65075898_65076249_65076372_65084758_65084948_65085635_65085755_65087353_65087537_65088759_65088870_65091284
transcript_76706.nnic	chr6	+	1152	7	NNC	ENSMUSG00000029920.10	novel	5168	24	NA	NA	-76	28	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_6	142.526508255677	65	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTGTGCTGAATGTTTGG	1625	False	NA	NA	False	NA	NA	NA	65019490	65044450	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_65019715_65020189_65020430_65029603_65029782_65033386_65033553_65035049_65035117_65044030_65044123_65044265
transcript_76707.nnic	chr6	+	1054	7	NNC	ENSMUSG00000029920.10	novel	2821	10	NA	NA	0	28	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_6	143.665603244324	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTGTGCTGAATGTTTGG	1954	False	NA	NA	False	NA	NA	NA	65019819	65044450	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_65019946_65020189_65020430_65029603_65029782_65033386_65033553_65035049_65035117_65044030_65044123_65044265
transcript_7671.known	chr10	+	464	4	FSM	ENSMUSG00000112883.2	ENSMUST00000217694.2	464	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.471404520791032	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGAAGAGACGCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	70682846	70689556	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_70682951_70683872_70683921_70688008_70688253_70689488
transcript_76710.known	chr6	+	600	3	FSM	ENSMUSG00000029920.10	ENSMUST00000205118.3	600	3	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_2	73	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTTTTGGAAATCTCCA	1785	False	NA	-67	True	AATAAA	-25	NA	65019650	65021115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_65019715_65020189_65020430_65020819
transcript_76714.known	chr6	+	734	3	FSM	ENSMUSG00000029920.10	ENSMUST00000204696.3	734	3	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_2	64	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTAGCAGAGCATTATGGA	1954	False	NA	5	True	AATAAA	-15	NA	65019819	65021187	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_65019946_65020189_65020430_65020819
transcript_76718.known	chr6	+	602	4	FSM	ENSMUSG00000029920.10	ENSMUST00000204801.3	602	4	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_1	65.2703778311588	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTCTGTTACACGAAGAA	1701	False	NA	NA	False	NA	NA	NA	65019566	65033422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_65019715_65020189_65020430_65029603_65029782_65033386
transcript_76719.known	chr6	+	2155	15	FSM	ENSMUSG00000029913.15	ENSMUST00000031976.14	2155	15	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_5	23.473389188611	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACGGCTCTTGACTTTCTT	NA	False	NA	NA	False	ATTAAA	-14	NA	65755971	65913360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_65756178_65771283_65771368_65808232_65808356_65832932_65833108_65834626_65834802_65836340_65836463_65839898_65839979_65846164_65846250_65847295_65847454_65858032_65858127_65860506_65860668_65863068_65863163_65878757_65878844_65904900_65905006_65912953
transcript_76724.known	chr6	+	1714	14	FSM	ENSMUSG00000029913.15	ENSMUST00000172638.2	1714	14	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_12	39.0006827432273	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGAGCGGCAAGGAACCAC	NA	False	NA	NA	False	NA	NA	NA	65756084	65913118	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_65756178_65771283_65771368_65808232_65808356_65832932_65833108_65834626_65834802_65836340_65836463_65839898_65839979_65846164_65846250_65847295_65847454_65858032_65858127_65860506_65860668_65863068_65863163_65904900_65905006_65912953
transcript_76729.nnic	chr6	+	1969	14	NNC	ENSMUSG00000029913.15	novel	2155	15	NA	NA	18413	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	43.8327914861403	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACGGCTCTTGACTTTCTT	NA	False	NA	NA	False	ATTAAA	-14	NA	65774497	65913360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_65774602_65808232_65808356_65832932_65833108_65834626_65834802_65836340_65836463_65839898_65839979_65846164_65846250_65847295_65847454_65858032_65858127_65860506_65860668_65863068_65863163_65878757_65878844_65904900_65905006_65912953
transcript_76731.known	chr6	+	1488	11	FSM	ENSMUSG00000029913.15	ENSMUST00000031973.13	1488	11	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	49.012753442344	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAAATTCAAAATAGA	NA	False	NA	NA	False	NA	NA	NA	65756008	65913282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_65756178_65771283_65771368_65808232_65808356_65846164_65846250_65847295_65847454_65858032_65858127_65860506_65860668_65863068_65863163_65878757_65878844_65904900_65905006_65912953
transcript_7674.nnic	chr10	+	948	3	NNC	ENSMUSG00000112883.2	novel	464	4	NA	NA	-549	96	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.5	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATCTGCCTTTCCTACCC	NA	False	NA	NA	False	AATAAA	-15	NA	70682297	70689652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_70682951_70688121_70688253_70689488
transcript_76744.nic	chr6	+	1176	7	NIC	ENSMUSG00000029913.15	novel	2155	15	NA	NA	-71	0	combination_of_known_junctions	FALSE	canonical	1	6	junction_3	59.1316797964979	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACGGCTCTTGACTTTCTT	NA	False	NA	NA	False	ATTAAA	-14	NA	65755900	65913360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_65756178_65771283_65771368_65808232_65808356_65863068_65863163_65878757_65878844_65904900_65905006_65912953
transcript_76754.known	chr6	+	1938	3	FSM	ENSMUSG00000029913.15	ENSMUST00000173538.2	1938	3	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_2	4.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACCAAACTAAACCAAAC	NA	False	NA	NA	False	NA	NA	NA	65756005	65809914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_65756178_65771283_65771368_65808232
transcript_76757.nnic	chr6	-	541	3	NNC	ENSMUSG00000107479.2	novel	479	2	NA	NA	-758	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	20	247	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGTGGCCATGGTGTC	NA	False	NA	NA	False	NA	NA	NA	66443480	66431171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_66431365_66442494_66442750_66443387
transcript_76758.known	chr6	-	479	2	FSM	ENSMUSG00000107479.2	ENSMUST00000203449.2	479	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGAGAGTTGCTGTGGCCAT	NA	False	NA	NA	False	NA	NA	NA	66442722	66431177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_66431429_66442494
transcript_7676.nnic	chr10	+	694	3	NIC	ENSMUSG00000112883.2	novel	464	4	NA	NA	-182	96	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATCTGCCTTTCCTACCC	NA	False	NA	NA	False	AATAAA	-15	NA	70682664	70689652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_+_70682951_70688008_70688253_70689488
transcript_76762.known	chr6	+	7557	6	FSM	ENSMUSG00000029910.15	ENSMUST00000116605.8	7557	6	0	0	0	0	multi-exon	FALSE	canonical	3	769	junction_5	83.3273064487266	2288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTATGTGTATGTGTGGT	NA	False	NA	NA	False	TATAAA	-21	NA	66512373	66524204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_66512584_66512941_66513089_66514552_66514674_66515948_66516053_66516754_66516935_66517409
transcript_76773.known	chr6	+	1725	5	FSM	ENSMUSG00000029910.15	ENSMUST00000101343.2	1725	5	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_4	68.2692280606717	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAAAATCAAGCTTTAAAA	NA	False	NA	19	True	AATAAA	-22	NA	66512451	66517975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_66512584_66512941_66513089_66514552_66514674_66515948_66516053_66516754
transcript_76778.known	chr6	+	1680	5	FSM	ENSMUSG00000029910.15	ENSMUST00000125430.2	1680	5	0	0	0	0	multi-exon	FALSE	canonical	3	769	junction_4	89.7646227642048	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAAAAATTAAGCCTTGT	NA	False	NA	48	True	TATAAA	-25	NA	66512408	66518004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_66513089_66514552_66514674_66515948_66516053_66516754_66516935_66517409
transcript_7678.known	chr10	-	5431	21	FSM	ENSMUSG00000014329.15	ENSMUST00000143791.8	5431	21	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	4.36205226928793	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATATGTGTCTCTTTTCTTT	NA	False	NA	NA	False	AATAAA	-35	NA	70995530	70758661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_70761209_70766420_70766521_70767914_70768076_70771661_70771819_70776315_70776471_70776829_70776870_70779199_70779366_70781054_70781212_70782374_70782508_70782634_70782832_70783601_70783764_70785768_70785956_70789224_70789357_70791953_70792206_70792851_70793047_70793490_70793545_70794603_70794763_70796964_70797045_70863727_70863798_70915019_70915067_70995250
transcript_76786.nnic	chr6	-	430	2	Genic_Genomic	ENSMUSG00000107176.2	novel	423	1	NA	NA	-27	59	multi-exon	FALSE	canonical	0	0	junction_1	0	3579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCTACAGAACTCCAAATAG	NA	False	NA	-1	True	ATTAAA	-26	NA	66852754	66852245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr6_-_66852412_66852490
transcript_76787.nnic	chr6	-	454	2	Genic_Genomic	ENSMUSG00000107176.2	novel	423	1	NA	NA	-27	59	multi-exon	FALSE	canonical	0	0	junction_1	0	4158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCTACAGAACTCCAAATAG	NA	False	NA	-1	True	ATTAAA	-26	NA	66852754	66852245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr6_-_66852493_66852547
transcript_76788.nnic	chr6	-	464	2	Genic_Genomic	ENSMUSG00000107176.2	novel	423	1	NA	NA	-27	59	multi-exon	FALSE	canonical	0	0	junction_1	0	4196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCTACAGAACTCCAAATAG	NA	False	NA	-1	True	ATTAAA	-26	NA	66852754	66852245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr6_-_66852503_66852547
transcript_76789.nnic	chr6	-	472	2	Genic_Genomic	ENSMUSG00000107176.2	novel	423	1	NA	NA	-28	59	multi-exon	FALSE	canonical	0	0	junction_1	0	4218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCTACAGAACTCCAAATAG	NA	False	NA	-1	True	ATTAAA	-26	NA	66852755	66852245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr6_-_66852510_66852547
transcript_76790.nnic	chr6	-	399	2	Genic_Genomic	ENSMUSG00000107176.2	novel	423	1	NA	NA	-27	59	multi-exon	FALSE	canonical	1	13	junction_1	0	4795	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCTACAGAACTCCAAATAG	NA	False	NA	-1	True	ATTAAA	-26	NA	66852754	66852245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr6_-_66852599_66852708
transcript_76791.nnic	chr6	-	432	2	Genic_Genomic	ENSMUSG00000107176.2	novel	423	1	NA	NA	-28	59	multi-exon	FALSE	canonical	0	0	junction_1	0	5236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCTACAGAACTCCAAATAG	NA	False	NA	-1	True	ATTAAA	-26	NA	66852755	66852245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr6_-_66852631_66852708
transcript_76792.known	chr6	-	423	1	FSM	ENSMUSG00000107176.2	ENSMUST00000202370.2	423	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	130853	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTCCAGTGTATTTGTAAA	NA	False	NA	-60	True	NA	NA	NA	66852727	66852304	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_66852300_66852700
transcript_76793.known	chr6	+	380	4	FSM	ENSMUSG00000036402.14	ENSMUST00000204862.2	380	4	0	0	0	0	multi-exon	FALSE	canonical	2	28	junction_1	141.313677878525	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGACCTGCATCATCTTAT	NA	False	NA	NA	False	NA	NA	NA	66873874	66994551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_66873974_66891436_66891495_66992708_66992828_66994447
transcript_76794.nnic	chr6	+	700	3	NNC	ENSMUSG00000036402.14	novel	748	4	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	2	92	junction_1	138.5	109	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCACTTCAGTCAAAAACC	NA	False	NA	3	True	ATTAAA	-9	NA	66873376	66994913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_66873500_66992716_66992828_66994447
transcript_76799.known	chr6	+	680	5	FSM	ENSMUSG00000036402.14	ENSMUST00000114224.8	680	5	0	0	0	0	multi-exon	FALSE	canonical	2	34	junction_3	133.478462682187	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCTTGTCTTTACAAAATA	NA	False	NA	-78	True	NA	NA	NA	66873439	66994832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_66873500_66891436_66891495_66920808_66920867_66992708_66992828_66994447
transcript_76800.known	chr6	+	1354	5	FSM	ENSMUSG00000036402.14	ENSMUST00000114222.4	1354	5	0	0	0	0	multi-exon	FALSE	canonical	2	28	junction_1	134.228350209633	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAAAAAAAGGTAATGAA	NA	False	NA	NA	False	NA	NA	NA	66873532	66995130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_66873974_66891436_66891495_66920808_66920862_66992708_66992828_66994447
transcript_76801.known	chr6	+	739	5	FSM	ENSMUSG00000036402.14	ENSMUST00000204511.3	739	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	129.389673080969	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAAGCACCGGCAAATTAAA	NA	False	NA	-25	True	AATATA	-32	NA	66873420	66994885	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_66873512_66891436_66891495_66992708_66992832_66994276_66994306_66994447
transcript_76802.known	chr6	+	387	1	FSM	ENSMUSG00000084154.2	ENSMUST00000121764.2	387	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATCACATAAAAGACTGAAA	NA	False	NA	NA	False	NA	NA	NA	66989468	66989855	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_66989500_66989900
transcript_76805.known	chr6	+	698	2	FSM	ENSMUSG00000087231.8	ENSMUST00000147548.3	698	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGAGAGTGTTGACAGT	NA	False	NA	NA	False	NA	NA	NA	67013588	67040745	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_67013920_67040378
transcript_76806.known	chr6	-	1223	4	FSM	ENSMUSG00000036390.9	ENSMUST00000043098.9	1223	4	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	3.77123616632825	393	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATTTCTCAACGTGTGGT	NA	False	NA	-7	True	AATAAA	-19	NA	67014390	67012079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_67012757_67013661_67013900_67013993_67014096_67014184
transcript_76807.nnic	chr6	+	850	4	NNC	ENSMUSG00000097603.4	novel	2041	6	NA	NA	-1897	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.471404520791032	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGTCTTTGTGTGAAT	NA	False	NA	NA	False	AATAAA	-24	NA	67090759	67094022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_67091215_67093055_67093129_67093608_67093752_67093843
transcript_76817.known	chr6	+	1667	8	FSM	ENSMUSG00000036371.7	ENSMUST00000203436.3	1667	8	0	0	0	0	multi-exon	FALSE	canonical	3	2187	junction_4	1760.87005396161	16858	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTAAAGCTTTCACTTCA	5844	False	NA	32	True	AATATA	-20	NA	67243966	67261290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249140_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
transcript_76864.known	chr6	+	1617	8	FSM	ENSMUSG00000036371.7	ENSMUST00000203077.3	1617	8	0	0	0	0	multi-exon	FALSE	canonical	3	3189	junction_3	1320.70455841276	23272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTTTCACTTCATTTGT	5872	False	NA	37	True	AATATA	-25	NA	67243994	67261295	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
transcript_76865.known	chr6	+	1336	8	FSM	ENSMUSG00000036371.7	ENSMUST00000204293.3	1336	8	0	0	0	0	multi-exon	FALSE	canonical	3	2743	junction_3	1435.93298973887	12498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5871	False	NA	19	True	NA	NA	NA	67243993	67261031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249140_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
transcript_76866.known	chr6	+	1166	7	FSM	ENSMUSG00000036371.7	ENSMUST00000205091.3	1166	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	2347.58275797799	3032	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5872	False	NA	19	True	NA	NA	NA	67243994	67261031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_67244394_67248181_67248305_67249140_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
transcript_76867.known	chr6	+	1288	7	FSM	ENSMUSG00000036371.7	ENSMUST00000205106.3	1288	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	2366.15668801164	7959	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACTGTCATTCATACCA	5866	False	NA	38	True	NA	NA	NA	67243988	67261050	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249847_67249923_67254744_67254923_67258631_67258806_67260886
transcript_76868.known	chr6	-	1735	1	FSM	ENSMUSG00000051397.6	ENSMUST00000058178.6	1735	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTATTGTTCTCCTTTGT	NA	False	NA	NA	False	AAAAAG	-36	NA	67512780	67511045	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_67511000_67512800
transcript_76870.known	chr6	-	1829	9	FSM	ENSMUSG00000053604.6	ENSMUST00000066134.6	1829	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.992156741649222	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGTCTTCTCTGCCGA	8005	False	NA	-5	True	AATAAA	-20	NA	70769216	70742703	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_70743633_70747977_70748078_70750413_70750556_70751234_70751304_70752092_70752158_70754335_70754396_70760544_70760601_70762528_70762590_70768869
transcript_76875.nnic	chr6	-	390	2	Antisense	novelGene_ENSMUSG00000068396.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	753	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGAGCTTTCTAAGCAGC	NA	False	NA	NA	False	NA	NA	NA	71102002	71101559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr6_-_71101643_71101695
transcript_76877.nnic	chr6	-	357	2	Antisense	novelGene_ENSMUSG00000068396.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	444	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGAGCTTTCTAAGCAGC	NA	False	NA	NA	False	NA	NA	NA	71102011	71101559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr6_-_71101718_71101812
transcript_76879.nnic	chr6	-	382	2	Antisense	novelGene_ENSMUSG00000068396.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	667	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGGAGCTTTCTAAGCAG	NA	False	NA	NA	False	NA	NA	NA	71102001	71101560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr6_-_71101692_71101750
transcript_76881.nnic	chr6	+	426	2	Genic_Genomic	ENSMUSG00000068396.10	novel	354	1	NA	NA	-33	92	multi-exon	FALSE	canonical	0	0	junction_1	0	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTCCAGAACAATGAAAGAG	NA	False	NA	NA	False	NA	NA	NA	71101560	71102039	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr6_+_71101768_71101820
transcript_76883.nnic	chr6	+	396	2	Genic_Genomic	ENSMUSG00000068396.10	novel	354	1	NA	NA	-33	54	multi-exon	FALSE	canonical	0	0	junction_1	0	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-30	NA	71101560	71102001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr6_+_71101903_71101947
transcript_76884.known	chr6	+	354	1	FSM	ENSMUSG00000068396.10	ENSMUST00000121998.2	354	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	209379	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGCACATTTTTTAAGTA	NA	False	NA	NA	False	NA	NA	NA	71101593	71101947	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_71101600_71101900
transcript_76885.known	chr6	-	2077	9	FSM	ENSMUSG00000054474.16	ENSMUST00000160918.8	2077	9	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_8	2.47171499166065	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACAGTTCTTTCCTGTT	NA	False	NA	NA	False	NA	NA	NA	71121423	71105149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_71105837_71106195_71106348_71108631_71108758_71108858_71109008_71111064_71111296_71115634_71115788_71116732_71116928_71118203_71118439_71121274
transcript_76888.known	chr6	+	456	2	FSM	ENSMUSG00000108206.2	ENSMUST00000204123.2	456	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCAATGTTCTGACCAGG	NA	False	NA	NA	False	NA	NA	NA	71141782	71143103	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_71141830_71142694
transcript_76889.known	chr6	+	1687	3	FSM	ENSMUSG00000053012.18	ENSMUST00000204436.3	1687	3	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_2	14.5	189	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTTGTGTCAGTGCT	NA	False	NA	6	True	AATAAA	-18	NA	71248660	71262303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_71248825_71259134_71259302_71260947
transcript_76890.known	chr6	+	2874	2	FSM	ENSMUSG00000073018.7	ENSMUST00000114185.4	2874	2	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTTGTGATGTGATT	NA	False	NA	11	True	NA	NA	NA	71270748	71279864	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_71270843_71277084
transcript_76891.known	chr6	-	6165	9	FSM	ENSMUSG00000002222.15	ENSMUST00000002292.15	6165	9	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_4	25.5828922328966	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGGATCCAGTTTGTGA	NA	False	NA	0	True	ATTAAA	-25	NA	71417621	71365617	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_71370173_71371608_71371764_71373835_71373939_71375344_71375511_71376110_71376278_71390233_71390335_71391768_71391904_71406001_71406145_71416981
transcript_76893.known	chr6	+	998	7	FSM	ENSMUSG00000053119.12	ENSMUST00000065364.5	998	7	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_6	144.919997086515	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTGTTTGTTTTTGCC	NA	False	NA	NA	False	NA	NA	NA	71520900	71559593	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_71521018_71529382_71529444_71537880_71538061_71551098_71551221_71554714_71554830_71556624_71556821_71559386
transcript_76900.known	chr6	+	2654	6	FSM	ENSMUSG00000053119.12	ENSMUST00000059462.12	2654	6	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_5	32.5490399243972	1432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTATATTATGCCTTTG	NA	False	NA	23	True	NA	NA	NA	71520780	71558563	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_71521018_71529382_71529444_71537880_71538061_71551098_71551221_71554714_71554830_71556624
transcript_76914.known	chr6	+	387	4	FSM	ENSMUSG00000053119.12	ENSMUST00000127774.8	387	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	8.25967446224258	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCAAAAGGAAGTCTGTGT	NA	False	NA	NA	False	AGTAAA	-29	NA	71520835	71537936	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_71520952_71529382_71529444_71535958_71536113_71537880
transcript_76920.known	chr6	-	4816	27	FSM	ENSMUSG00000053470.14	ENSMUST00000065509.11	4816	27	0	0	0	0	multi-exon	TRUE	canonical	3	176	junction_18	110.285703472991	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGATAATCATTTCTTAGT	NA	False	NA	-4	True	AATAAA	-18	NA	71609889	71565955	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71588488_71589001_71590815_71590980_71596941_71597031_71597121_71597195_71597427_71597553_71598328_71598432_71601576_71601688_71602742_71602899_71609039_71609256_71609480_71609564_71609821
transcript_76922.nic	chr6	-	3311	17	NIC	ENSMUSG00000053470.14	novel	4753	26	NA	NA	-125	0	combination_of_known_junctions	FALSE	canonical	3	172	junction_16	78.1394736592844	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGCTGTTCTTTGTCCTTT	NA	False	NA	-17	True	ATTAAA	-19	NA	71586248	71566020	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71585988
transcript_7693.nnic	chr10	+	718	3	NNC	ENSMUSG00000112028.2	novel	429	2	NA	NA	-6	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGACTCATTTTCAGGCC	NA	False	NA	NA	False	AATAAA	-24	NA	71037568	71040325	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_71037641_71038724_71039000_71039954
transcript_76934.nic	chr6	-	1741	3	ISM	ENSMUSG00000053470.14	ENSMUST00000205470.2	1718	11	5	8134	5	0	5prime_fragment	FALSE	canonical	3	172	junction_2	138	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAATCAGGTTTTCT	NA	False	NA	NA	False	TATAAA	-17	NA	71586118	71579726	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_71581133_71584385_71584591_71585988
transcript_76935.nic	chr6	-	1330	3	ISM	ENSMUSG00000053470.14	ENSMUST00000205470.2	1718	11	5	8545	5	-22	5prime_fragment	FALSE	canonical	3	172	junction_2	138	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCTGGCACAAAATACTTT	NA	False	NA	NA	False	AATAAA	-13	NA	71586118	71580137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_71581133_71584385_71584591_71585988
transcript_76937.known	chr6	-	1718	11	FSM	ENSMUSG00000053470.14	ENSMUST00000205470.2	1718	11	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_10	80.0652234119159	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACGACAAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	71586123	71571592	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71585988
transcript_76939.nnic	chr6	-	1510	2	Genic_Genomic	ENSMUSG00000108772.2	novel	485	1	NA	NA	-41880	215	multi-exon	FALSE	canonical	0	0	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATGATTCATTTACAGAG	NA	False	NA	NA	False	AATAAA	-27	NA	71660960	71618380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr6_-_71619133_71660202
transcript_7694.known	chr10	+	429	2	FSM	ENSMUSG00000112028.2	ENSMUST00000218350.2	429	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGTACTCTGACTCATT	NA	False	NA	NA	False	AATAAA	-16	NA	71037574	71040317	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_71037641_71039954
transcript_76941.known	chr6	+	3924	7	FSM	ENSMUSG00000052852.9	ENSMUST00000121469.2	3924	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	4.12310562561766	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTGTAATGTTGGGCTAAT	1275	False	NA	NA	False	AATAAA	-27	NA	71684544	71787694	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_71684986_71733347_71733421_71738348_71738426_71750171_71750293_71757705_71757820_71772130_71772309_71784774
transcript_76946.known	chr6	-	707	4	FSM	ENSMUSG00000052962.4	ENSMUST00000205435.2	707	4	0	0	0	0	multi-exon	FALSE	canonical	1	35	junction_3	666.396445235284	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCAACTGGTACGCTGGCG	NA	False	NA	NA	False	AGTAAA	-36	NA	71800747	71793146	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_71793272_71794588_71794734_71795652_71795843_71800500
transcript_76948.known	chr6	-	626	1	FSM	ENSMUSG00000108466.2	ENSMUST00000206975.2	626	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAATTAGACTCTTAGAAT	NA	False	NA	NA	False	ATTAAA	-18	NA	71808694	71808068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_71808100_71808700
transcript_76949.known	chr6	+	2728	15	FSM	ENSMUSG00000052337.16	ENSMUST00000064062.13	2728	15	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_4	225.763692603481	706	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAATGAAAACTGAGTACTC	NA	False	NA	-1	True	AATAAA	-6	NA	71808314	71852228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829713_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71843709_71843725_71845563_71845788_71848410_71848543_71849777_71849908_71851300
transcript_76950.known	chr6	+	2299	15	FSM	ENSMUSG00000052337.16	ENSMUST00000101301.10	2299	15	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_4	278.631248156016	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCTAGGAAGAGTTGTGTA	NA	False	NA	NA	False	NA	NA	NA	71808396	71851914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71843709_71843725_71845563_71845788_71848410_71848543_71849777_71849908_71851300
transcript_76951.known	chr6	+	2518	13	FSM	ENSMUSG00000052337.16	ENSMUST00000114151.10	2518	13	0	0	0	0	multi-exon	TRUE	canonical	3	21	junction_9	563.839288322085	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACTCTATCCCTTTTCAA	NA	False	NA	12	True	AATAAA	-19	NA	71808393	71852241	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746_71829852_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71845563_71845788_71848410_71848543_71849777_71849908_71851300
transcript_76952.known	chr6	+	2469	13	FSM	ENSMUSG00000052337.16	ENSMUST00000166975.8	2469	13	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_4	527.655558948154	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTGAGTACTCTATCCC	NA	False	NA	5	True	AATAAA	-12	NA	71808316	71852234	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71843709_71843725_71845563_71845788_71848410_71848543_71849777_71849879_71851300
transcript_76953.known	chr6	-	2581	24	FSM	ENSMUSG00000063884.7	ENSMUST00000082094.5	2581	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	208.34992196086	704	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTTTGTAAGCGTGTAC	3048	False	NA	-3	True	AATAAA	-26	NA	71885734	71857623	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866354_71866577_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
transcript_7696.known	chr10	-	899	7	FSM	ENSMUSG00000003923.15	ENSMUST00000121685.8	899	7	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_6	143.827056641726	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTCTCAAAGCCTTAAAGTG	NA	False	NA	NA	False	AAGAAA	-8	NA	71073508	71064341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_71064530_71064916_71064974_71069186_71069283_71070694_71070845_71071372_71071444_71072745_71072862_71073287
transcript_76972.known	chr6	-	1161	3	FSM	ENSMUSG00000063884.7	ENSMUST00000205269.2	1161	3	0	0	0	0	multi-exon	FALSE	canonical	3	959	junction_1	68	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTGTAAGCGTGTACAT	NA	False	NA	-1	True	AATAAA	-28	NA	71859579	71857621	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_71858216_71858489_71858649_71859171
transcript_76973.known	chr6	+	9216	34	FSM	ENSMUSG00000049553.12	ENSMUST00000055296.11	9216	34	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_3	38.128991835157	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGGATCATCTGGATG	NA	False	NA	NA	False	NA	NA	NA	71886044	71959459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_71886224_71889859_71890065_71892004_71892155_71894725_71894834_71897425_71897512_71897632_71897737_71901573_71901682_71903267_71903374_71903632_71903796_71906292_71906464_71906648_71906772_71908577_71908809_71913279_71913535_71918330_71918523_71925333_71925484_71926323_71926508_71927563_71927647_71927746_71927906_71929969_71930069_71931676_71931830_71938507_71938591_71940657_71940824_71941649_71941872_71942539_71942755_71943359_71943528_71944295_71944432_71944842_71945001_71949681_71949809_71951084_71951196_71951727_71952004_71953002_71953204_71954317_71954436_71954927_71955093_71955398
transcript_76976.known	chr6	+	3394	21	FSM	ENSMUSG00000049553.12	ENSMUST00000206556.2	3394	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	99.1927416699428	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	71886036	71932134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_71886224_71889859_71890065_71892004_71892155_71894725_71894834_71897425_71897512_71897632_71897737_71901573_71901682_71901951_71902024_71903267_71903374_71903632_71903796_71906292_71906464_71906648_71906772_71908577_71908809_71913279_71913535_71918330_71918523_71925333_71925484_71926323_71926508_71927563_71927647_71927746_71927906_71929969_71930069_71931676
transcript_76977.known	chr6	+	1492	6	FSM	ENSMUSG00000049553.12	ENSMUST00000205842.2	1492	6	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_3	18.8191391939164	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGTCCTGAGACGAGTAC	NA	False	NA	NA	False	ATTAAA	-13	NA	71886052	71898404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_71886224_71889859_71890065_71892004_71892155_71894725_71894834_71897425_71897512_71897632
transcript_76978.known	chr6	+	2258	7	FSM	ENSMUSG00000056091.13	ENSMUST00000069994.11	2258	7	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_5	8.15304987242334	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGAGTGTTTGTTCCTTC	NA	False	NA	20	True	NA	NA	NA	72074575	72131555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_72074767_72105247_72105372_72109035_72109148_72119123_72119468_72124052_72124240_72126002_72126162_72130414
transcript_76981.known	chr6	-	2244	13	FSM	ENSMUSG00000056305.5	ENSMUST00000070345.5	2244	13	0	0	0	0	multi-exon	FALSE	canonical	3	571	junction_6	46.7748745470139	248	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTTGTGGGTGGGCACT	NA	False	NA	67	True	NA	NA	NA	72322167	72295660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_72296223_72296722_72296810_72298238_72298375_72302628_72302772_72305500_72305690_72306432_72306501_72310092_72310171_72313242_72313469_72314684_72314838_72315375_72315513_72316949_72317045_72319881_72319952_72321867
transcript_76984.known	chr6	+	4605	4	FSM	ENSMUSG00000058706.6	ENSMUST00000077783.5	4605	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	6.54896090146283	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTGCCAAAAGTTGTG	8326	False	NA	15	True	AATAAA	-15	NA	72324316	72330131	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_72324499_72324575_72324695_72325511_72325664_72325979
transcript_76986.nic	chr6	+	1770	3	ISM	ENSMUSG00000058706.6	ENSMUST00000077783.5	4605	4	-18	3169	-1	-638	intron_retention	FALSE	canonical	3	33	junction_1	8	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGAAGAAGAAGATGA	8308	False	NA	NA	False	NA	NA	NA	72324298	72326962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_72324499_72324575_72324695_72325511
transcript_76987.known	chr6	+	2118	3	FSM	ENSMUSG00000058706.6	ENSMUST00000204152.2	2118	3	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_2	4.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAGGGCTTTGTCTTCTA	8359	False	NA	NA	False	CATAAA	-43	NA	72324349	72327600	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_72324695_72325511_72325664_72325979
transcript_76988.known	chr6	+	1033	2	FSM	ENSMUSG00000058706.6	ENSMUST00000205472.2	1033	2	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTTTGGGGGGTGTCAGG	8318	False	NA	NA	False	NA	NA	NA	72324308	72326158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_72324695_72325511
transcript_76991.known	chr6	+	1546	8	FSM	ENSMUSG00000055912.9	ENSMUST00000069695.9	1546	8	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	17.1583263538524	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTGTGTTCTGGAGAAT	NA	False	NA	10	True	ATTAAA	-21	NA	72332429	72336745	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_72332528_72333113_72333296_72333704_72333753_72334032_72334120_72334931_72335000_72335290_72335419_72335561_72335740_72335988
transcript_76997.known	chr6	-	1100	5	FSM	ENSMUSG00000055850.13	ENSMUST00000125554.8	1100	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	461.587681269767	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCACTCTTAGTTTCTGGC	8480	False	NA	NA	False	NA	NA	NA	72339343	72336854	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_72337626_72337857_72337933_72338099_72338210_72338294_72338354_72339258
transcript_77.known	ERCC-00162	+	507	1	FSM	ERCC-00162A	DQ516750	507	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	366	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00162_+_0_500
transcript_770.known	chr1	-	497	4	FSM	ENSMUSG00000033845.14	ENSMUST00000045689.14	497	4	0	0	0	0	multi-exon	FALSE	canonical	2	24	junction_3	958.675127454551	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGACATCTGACCAGCAT	1661	False	NA	-18	True	NA	NA	NA	4855921	4844658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_4844740_4847747_4847872_4852790_4852957_4855795
transcript_7700.known	chr10	-	1431	7	FSM	ENSMUSG00000019927.7	ENSMUST00000020085.7	1431	7	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_2	5.39804491356722	264	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCTTGACTACTTAATGCA	NA	False	NA	0	True	AATAAA	-18	NA	71121092	71090809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_71091705_71092444_71092539_71094030_71094137_71095571_71095650_71097913_71097946_71098028_71098093_71120930
transcript_77001.known	chr6	-	789	5	FSM	ENSMUSG00000055850.13	ENSMUST00000129233.8	789	5	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	481.225194165892	374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAACTGATAAATTAAC	8450	False	NA	-38	True	NA	NA	NA	72339373	72337259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_72337626_72337857_72337933_72338104_72338210_72338394_72338523_72339258
transcript_77004.known	chr6	-	617	4	FSM	ENSMUSG00000055850.13	ENSMUST00000151063.2	617	4	0	0	0	0	multi-exon	FALSE	canonical	2	47	junction_3	415.627236836086	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGTCTGAGTGTTCTTTT	8475	False	NA	-97	True	NA	NA	NA	72339348	72337318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_72337626_72337857_72337933_72338099_72338210_72339223
transcript_77005.known	chr6	-	638	4	FSM	ENSMUSG00000055850.13	ENSMUST00000126065.8	638	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	435.806022088829	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTTAAAACTGATAAATTAA	8477	False	NA	-39	True	NA	NA	NA	72339346	72337260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_72337626_72337857_72337933_72338099_72338210_72339258
transcript_77006.known	chr6	-	1191	4	FSM	ENSMUSG00000055850.13	ENSMUST00000069595.13	1191	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	437.683548798546	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTGTGGTTCTGCTGTGT	8447	False	NA	NA	False	TATAAA	-15	NA	72339376	72336696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_72337626_72337857_72337933_72338099_72338210_72339299
transcript_77007.known	chr6	-	728	4	FSM	ENSMUSG00000055850.13	ENSMUST00000133978.2	728	4	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_3	424.755877599776	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAACCTCCACGGAGCCAT	8412	False	NA	NA	False	NA	NA	NA	72339411	72337595	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_72337933_72338099_72338210_72338394_72338523_72339258
transcript_77012.known	chr6	-	1434	5	FSM	ENSMUSG00000055850.13	ENSMUST00000069580.12	1434	5	0	0	0	0	multi-exon	FALSE	canonical	3	875	junction_2	66.4266512779321	5818	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTGTGGTTCTGCTGTGT	8408	False	NA	NA	False	TATAAA	-15	NA	72339415	72336696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_72337626_72337857_72337933_72338099_72338210_72338394_72338523_72339223
transcript_77013.known	chr6	+	1478	7	FSM	ENSMUSG00000055912.9	ENSMUST00000132243.3	1478	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	46.0639651885168	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTGTGTTCTGGAGAAT	NA	False	NA	10	True	ATTAAA	-21	NA	72332429	72336745	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_72332528_72333113_72333296_72333704_72333753_72334032_72334120_72335290_72335419_72335561_72335740_72335988
transcript_77014.known	chr6	-	869	5	FSM	ENSMUSG00000055850.13	ENSMUST00000114095.2	869	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	424.836071326341	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGTAGCTGTTTAAAACT	8458	False	NA	-49	True	NA	NA	NA	72339365	72337270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_72337626_72337857_72337997_72338104_72338210_72338394_72338523_72339223
transcript_77015.known	chr6	-	623	3	FSM	ENSMUSG00000073002.10	ENSMUST00000101285.10	623	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	4	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTCTCTCTCTCTCTCT	9583	False	NA	NA	False	AGTAAA	-21	NA	72357405	72346010	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_72346454_72347176_72347315_72357363
transcript_77016.known	chr6	-	2619	2	FSM	ENSMUSG00000073002.10	ENSMUST00000206154.2	2619	2	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	72349118	72345776	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_72346454_72347176
transcript_77017.known	chr6	-	553	4	FSM	ENSMUSG00000073002.10	ENSMUST00000074231.6	553	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.77123616632825	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAAATGCTCTCTCTCTCT	9537	False	NA	NA	False	AGTAAA	-15	NA	72357451	72346016	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_72346163_72346272_72346454_72347176_72347315_72357363
transcript_77022.known	chr6	-	820	3	FSM	ENSMUSG00000050732.10	ENSMUST00000059983.10	820	3	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_1	0.5	3072	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGGCGCTTTACTCCTGTG	8093	False	NA	-18	True	AATAAA	-25	NA	72367686	72362205	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_72362637_72365244_72365404_72367456
transcript_77023.known	chr6	+	2929	15	FSM	ENSMUSG00000053460.9	ENSMUST00000065906.9	2929	15	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_7	7.03816128585544	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTACCTGGCTTATTAATAG	1281	False	NA	12	True	NA	NA	NA	72391290	72407695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_72391433_72391654_72391826_72394837_72394997_72395283_72395450_72399398_72399478_72400916_72401024_72402768_72402933_72403343_72403610_72404024_72404157_72404880_72405033_72405440_72405611_72405779_72405911_72406115_72406264_72406426_72406623_72406949
transcript_77028.known	chr6	-	1400	9	FSM	ENSMUSG00000053907.11	ENSMUST00000206692.2	1400	9	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	259.956697115116	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAATACTTTCGCCATGA	NA	False	NA	NA	False	AATAAA	-25	NA	72416539	72411527	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_72411723_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
transcript_77029.known	chr6	-	2804	9	FSM	ENSMUSG00000053907.11	ENSMUST00000059472.10	2804	9	0	0	0	0	multi-exon	FALSE	canonical	3	591	junction_1	84.6271233116192	964	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTGTCTATTACTTGT	NA	False	NA	-11	True	AATAAA	-17	NA	72416541	72409781	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_72411379_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
transcript_77033.known	chr6	-	3387	8	FSM	ENSMUSG00000053907.11	ENSMUST00000205335.2	3387	8	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_3	40.6724095420862	696	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTGTCTATTACTTGT	NA	False	NA	-11	True	AATAAA	-17	NA	72416539	72409781	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
transcript_77039.known	chr6	+	1247	10	FSM	ENSMUSG00000056737.15	ENSMUST00000071044.13	1247	10	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_1	22.7389913671443	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCCTGTGTGGCTTGTCC	NA	False	NA	12	True	AATAAA	-23	NA	72521373	72539966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_72521450_72532255_72532292_72532459_72532633_72532733_72532889_72533067_72533236_72534693_72534844_72535147_72535241_72535721_72535855_72538010_72538100_72539792
transcript_77042.known	chr6	+	1400	10	FSM	ENSMUSG00000056737.15	ENSMUST00000114071.8	1400	10	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	14.6439217576592	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCCTGTGTGGCTTGTCC	NA	False	NA	12	True	AATAAA	-23	NA	72526255	72539966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_72526485_72532255_72532292_72532459_72532633_72532733_72532889_72533067_72533236_72534693_72534844_72535147_72535241_72535721_72535855_72538010_72538100_72539792
transcript_77046.nnic	chr6	+	492	4	NNC	ENSMUSG00000056737.15	novel	1247	10	NA	NA	2301	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	32.0555074137902	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTCCTGTGTGGCTTGT	NA	False	NA	10	True	AATAAA	-21	NA	72535262	72539964	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_72535361_72535721_72535855_72538010_72538100_72539792
transcript_77048.known	chr6	-	2164	13	FSM	ENSMUSG00000056698.12	ENSMUST00000114069.8	2164	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_12	16.532795690183	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCTTCCAAGATGAAGTT	NA	False	NA	1	True	AATAAA	-23	NA	72575325	72542904	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_72543847_72545797_72545926_72546243_72546321_72552623_72552755_72554236_72554360_72554547_72554672_72556606_72556699_72557283_72557353_72563427_72563498_72564593_72564669_72571722_72572004_72573418_72573450_72575304
transcript_77049.known	chr6	-	2122	12	FSM	ENSMUSG00000056698.12	ENSMUST00000070990.8	2122	12	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_11	7.42677755109095	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATCTCTGGTATTTTCTTC	NA	False	NA	-11	True	AATAAA	-11	NA	72575326	72542916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_72543847_72545797_72545926_72546243_72546321_72552623_72552755_72554236_72554360_72554547_72554672_72556606_72556699_72557283_72557353_72563427_72563498_72564593_72564669_72571722_72572004_72575304
transcript_77050.known	chr6	-	2509	11	FSM	ENSMUSG00000056698.12	ENSMUST00000141833.8	2509	11	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_10	7.7	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAAATAAATAAAAATAG	NA	False	NA	NA	False	NA	NA	NA	72575378	72544532	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_72545926_72546243_72546321_72552623_72552755_72554236_72554360_72554547_72554672_72556606_72556699_72557283_72557353_72563427_72563498_72564593_72564669_72571722_72572004_72575304
transcript_77052.known	chr6	+	3027	11	FSM	ENSMUSG00000056666.14	ENSMUST00000070597.13	3027	11	0	0	0	0	multi-exon	FALSE	canonical	3	404	junction_1	54.9894535342915	520	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTTGATATCTGAAATTT	NA	False	NA	NA	False	AATATA	-25	NA	72575457	72585408	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_72575780_72577955_72578139_72578458_72578701_72579637_72579840_72580636_72580835_72581848_72581969_72582954_72583094_72583367_72583478_72583555_72583723_72583856_72584017_72584224
transcript_77057.known	chr6	-	5013	4	FSM	ENSMUSG00000056429.5	ENSMUST00000070524.5	5013	4	0	0	0	0	multi-exon	FALSE	canonical	3	270	junction_1	25.9786236911983	191	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGCATTGAAACATTACAT	4419	False	NA	-37	True	AATAAA	-12	NA	72593983	72585414	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_72589094_72591054_72591139_72592506_72593433_72593659
transcript_7706.known	chr10	-	1084	3	FSM	ENSMUSG00000037710.9	ENSMUST00000045887.9	1084	3	0	0	0	0	multi-exon	FALSE	canonical	3	1606	junction_1	82	7667	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGTGGCTCTGTAACGG	1253	False	NA	7	True	AATAAA	-27	NA	71180784	71166309	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_71166957_71172043_71172250_71180553
transcript_77061.known	chr6	-	3251	7	FSM	ENSMUSG00000055239.11	ENSMUST00000068697.11	3251	7	0	0	0	0	multi-exon	FALSE	canonical	3	1059	junction_2	56.146880788003	652	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCACTCGAATTTCTTTGG	8465	False	NA	-9	True	AATAAA	-18	NA	72876962	72818096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_72820114_72825207_72825491_72826426_72826602_72827365_72827468_72835756_72835897_72838740_72838909_72876596
transcript_77070.known	chr6	-	570	3	FSM	ENSMUSG00000079523.9	ENSMUST00000114050.8	570	3	0	0	0	0	multi-exon	FALSE	canonical	3	26814	junction_1	200.5	64394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGTGGTCTGAATTTTTTA	NA	False	NA	-11	True	AATAAA	-20	NA	72935471	72934329	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_72934636_72934895_72935008_72935319
transcript_77072.known	chr6	-	433	2	FSM	ENSMUSG00000079523.9	ENSMUST00000144337.2	433	2	0	0	0	0	multi-exon	FALSE	canonical	3	27215	junction_1	0	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCCATTGAACAGGAAAAGA	NA	False	NA	NA	False	GGGGCT	-37	NA	72935382	72934637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_72935008_72935319
transcript_77073.known	chr6	-	690	2	FSM	ENSMUSG00000079523.9	ENSMUST00000114049.2	690	2	0	0	0	0	multi-exon	FALSE	canonical	3	26814	junction_1	0	17509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTGGCGTGGTCTGAAT	NA	False	NA	-17	True	AATAAA	-14	NA	72935285	72934335	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_72934636_72934895
transcript_77076.known	chr6	+	1519	9	FSM	ENSMUSG00000052738.15	ENSMUST00000064740.9	1519	9	0	0	0	0	multi-exon	FALSE	canonical	3	1222	junction_2	134.074081667562	5622	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTGAAGACTTTTTATTG	2315	False	NA	19	True	AATAAA	-23	NA	73225364	73253894	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_73225737_73233153_73233258_73237457_73237575_73240790_73241004_73241212_73241271_73246297_73246382_73247953_73248106_73252183_73252373_73253664
transcript_7708.known	chr10	+	1323	5	FSM	ENSMUSG00000060733.14	ENSMUST00000118381.8	1323	5	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_3	39.274673773311	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTAAAGCTGCT	2289	False	NA	NA	False	AATAAA	-14	NA	71183665	71213246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_71183921_71199279_71199366_71201838_71201936_71208537_71208711_71212534
transcript_7710.known	chr10	+	1699	1	FSM	ENSMUSG00000112714.2	ENSMUST00000218024.2	1699	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	166	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATCTTGCTTTTGGAGGT	NA	False	NA	NA	False	NA	NA	NA	71540119	71541818	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_71540100_71541800
transcript_7711.known	chr10	+	1834	8	FSM	ENSMUSG00000019923.15	ENSMUST00000020081.11	1834	8	0	0	0	0	multi-exon	FALSE	canonical	3	928	junction_7	94.1772102940808	2246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTGTCCTTGTTGCATT	NA	False	NA	10	True	AATAAA	-23	NA	72490676	72510796	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72509797
transcript_77111.known	chr6	-	2353	1	FSM	ENSMUSG00000072476.7	ENSMUST00000097218.7	2353	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTCACGAGGAAGTGGAAA	NA	False	NA	NA	False	NA	NA	NA	76474767	76472414	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_76472400_76474800
transcript_77112.known	chr6	-	418	2	FSM	ENSMUSG00000063063.13	ENSMUST00000160252.2	418	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTTTCATTTGCTTTTC	NA	False	NA	NA	False	AATAAA	-27	NA	77956568	77903487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_77903740_77956402
transcript_77113.known	chr6	+	904	7	FSM	ENSMUSG00000059654.8	ENSMUST00000204687.3	904	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTTTGAATCAGTTATAT	NA	False	NA	NA	False	AATAAA	-20	NA	78399693	78405650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_78399775_78402912_78402991_78403267_78403375_78403895_78404015_78404307_78404446_78405096_78405209_78405381
transcript_7712.known	chr10	+	1138	8	FSM	ENSMUSG00000019923.15	ENSMUST00000160337.2	1138	8	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_7	327.562862014955	646	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGTTGATGTTGTTGT	NA	False	NA	13	True	ATTAAA	-14	NA	72490727	72504997	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72504643
transcript_77124.known	chr6	-	532	2	FSM	ENSMUSG00000108288.2	ENSMUST00000203549.2	532	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGGTATC	2219	False	NA	NA	False	NA	NA	NA	81963724	81962728	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_81962890_81963353
transcript_77125.known	chr6	+	1773	3	FSM	ENSMUSG00000035104.15	ENSMUST00000042974.15	1773	3	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	1.5	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGCTTCGTGTCTGTGTG	NA	False	NA	NA	False	AATAAA	-19	NA	82018603	82070080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_82018883_82048035_82048224_82068774
transcript_77126.known	chr6	+	881	3	FSM	ENSMUSG00000035104.15	ENSMUST00000150691.2	881	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	2	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGATGTGTGGATAGCT	NA	False	NA	NA	False	NA	NA	NA	82018668	82024131	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_82018883_82021295_82021490_82023658
transcript_7713.known	chr10	+	2676	8	FSM	ENSMUSG00000019923.15	ENSMUST00000105431.8	2676	8	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_7	390.63955932051	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTTACGTGTTTAGTTG	NA	False	NA	NA	False	TATAAA	-32	NA	72490726	72505621	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72503730
transcript_77148.known	chr6	-	457	4	FSM	ENSMUSG00000030042.16	ENSMUST00000161309.8	457	4	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_1	435.143909784134	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAAATCATACCCCTGCT	6109	False	NA	NA	False	NA	NA	NA	82682346	82595972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_82596120_82628417_82628460_82629063_82629149_82682163
transcript_7716.known	chr10	-	1477	4	FSM	ENSMUSG00000085456.3	ENSMUST00000219998.2	1477	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGATAAGATTCTCTTCCTC	NA	False	NA	NA	False	NA	NA	NA	73163007	73118091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_73118619_73119452_73119940_73138672_73138729_73162600
transcript_77160.known	chr6	-	455	4	FSM	ENSMUSG00000030042.16	ENSMUST00000140281.2	455	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	461.738983505713	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAATTCAAGCCTGGATGT	NA	False	NA	NA	False	NA	NA	NA	82629499	82624823	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_82625018_82628417_82628460_82629063_82629149_82629365
transcript_77161.known	chr6	-	890	4	FSM	ENSMUSG00000030042.16	ENSMUST00000141138.8	890	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	458.476462500167	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATATGTGATATAAAATTT	NA	False	NA	-36	True	NA	NA	NA	82629501	82624296	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_82625018_82628417_82628460_82629063_82629149_82629459
transcript_7717.nic	chr10	-	778	3	ISM	ENSMUSG00000009070.15	ENSMUST00000179546.8	1190	7	70713	0	70688	0	3prime_fragment	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGGTTTCCCGTGCCGCC	NA	False	NA	NA	False	AATAAA	-19	NA	74797672	74793308	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_74793616_74795399_74795537_74797338
transcript_7718.known	chr10	+	3331	2	FSM	ENSMUSG00000040009.7	ENSMUST00000159991.2	3331	2	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCCAAACTCTGTCCCTG	NA	False	NA	NA	False	AATAAA	-12	NA	74826672	74852730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_74827973_74850699
transcript_77183.known	chr6	-	1769	4	FSM	ENSMUSG00000030042.16	ENSMUST00000095786.6	1769	4	0	0	0	0	multi-exon	FALSE	canonical	3	735	junction_3	133.522365999941	3053	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTCTTGAAGTGTCTTA	NA	False	NA	1	True	ATTAAA	-27	NA	82629910	82623681	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_82625018_82628417_82628460_82629063_82629149_82629604
transcript_77184.known	chr6	-	648	4	FSM	ENSMUSG00000030042.16	ENSMUST00000160281.8	648	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	443.647257276419	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACATGTGTGGTATGTGCT	NA	False	NA	NA	False	AATAAA	-33	NA	82629851	82598832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_82599107_82628417_82628460_82629063_82629149_82629604
transcript_77185.known	chr6	-	5513	18	FSM	ENSMUSG00000000628.11	ENSMUST00000000642.11	5513	18	0	0	0	0	multi-exon	FALSE	canonical	3	435	junction_14	56.0328005768445	585	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCAGTGTGTGATTGGAT	9398	False	NA	-1	True	AATAAA	-23	NA	82751435	82702005	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_82704436_82705692_82705927_82706525_82706682_82707748_82707933_82708028_82708129_82709081_82709178_82711828_82711949_82712227_82712377_82713510_82713816_82715267_82715502_82716499_82716656_82719783_82719968_82720248_82720349_82720925_82721022_82721842_82721963_82726169_82726319_82737084_82737248_82750898
transcript_77189.known	chr6	-	1833	4	FSM	ENSMUSG00000100291.7	ENSMUST00000186147.7	1833	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.4142135623731	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGTGGTTATATCTTATT	NA	False	NA	NA	False	AATAAA	-22	NA	82858834	82854844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_82856458_82857375_82857438_82858217_82858291_82858749
transcript_7719.known	chr10	+	1460	8	FSM	ENSMUSG00000009681.11	ENSMUST00000218465.2	1460	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	15.7635591132957	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGGGGGCCACAGCCAT	NA	False	NA	9	True	AATAAA	-18	NA	75009796	75018614	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_75010000_75011108_75011169_75012174_75012285_75013715_75013856_75015955_75016091_75016966_75017073_75017400_75017564_75018071
transcript_77191.known	chr6	+	1945	10	FSM	ENSMUSG00000030041.10	ENSMUST00000113980.4	1945	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	176.542723818721	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTGTTCAGAGCATTCC	NA	False	NA	12	True	ATTAAA	-17	NA	82923882	83007164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_82923934_82933389_82933688_82944947_82945134_82958796_82958966_82980710_82980885_82982486_82982650_82983298_82983441_83003178_83003386_83005372_83005514_83006750
transcript_77194.nnic	chr6	+	2001	10	NNC	ENSMUSG00000030041.10	novel	1945	10	NA	NA	48	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	229.298931528256	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTGTTCAGAGCATTCC	NA	False	NA	12	True	ATTAAA	-17	NA	82923930	83007164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_82924038_82933389_82933688_82944947_82945134_82958796_82958966_82980710_82980885_82982486_82982650_82983298_82983441_83003178_83003386_83005372_83005514_83006750
transcript_77196.nic	chr6	+	1848	9	NIC	ENSMUSG00000030041.10	novel	1945	10	NA	NA	-45	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	187.231641289607	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATTGTTCAGAGCATTC	NA	False	NA	11	True	ATTAAA	-16	NA	82923837	83007163	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_82923934_82933389_82933688_82944947_82945134_82958796_82958966_82980710_82980885_82982486_82982650_82983298_82983441_83003178_83003386_83006750
transcript_7721.known	chr10	-	3500	6	FSM	ENSMUSG00000033416.16	ENSMUST00000039796.14	3500	6	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_3	9.3893556754444	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAGAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	75353215	75342116	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_75344804_75345425_75345668_75345865_75345958_75346954_75347121_75347905_75347991_75352987
transcript_77213.known	chr6	+	607	2	FSM	ENSMUSG00000030041.10	ENSMUST00000204891.2	607	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGCAGGGCATCAGAAC	4489	False	NA	NA	False	AATAAA	-23	NA	83003318	83007290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_83003386_83006750
transcript_77215.known	chr6	-	1807	5	FSM	ENSMUSG00000068335.7	ENSMUST00000089651.6	1807	5	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	5.31507290636732	501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTCTGCGTATGAATGAG	NA	False	NA	-4	True	ATTAAA	-19	NA	83010452	83007914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_83009042_83009211_83009397_83009515_83009610_83009747_83010048_83010351
transcript_77218.known	chr6	-	1966	4	FSM	ENSMUSG00000068335.7	ENSMUST00000149918.2	1966	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	15.121728296285	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAAGGCCTCTGCGTATG	NA	False	NA	-10	True	ATTAAA	-13	NA	83010449	83007920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_83009397_83009515_83009610_83009747_83010046_83010351
transcript_7724.known	chr10	+	3042	10	FSM	ENSMUSG00000033427.15	ENSMUST00000039925.8	3042	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.993807989999907	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATCTCTTGGTGTCTCTC	1579	False	NA	NA	False	NA	NA	NA	75242744	75277513	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_75242994_75248600_75248773_75250823_75250912_75260326_75260422_75264014_75264177_75265795_75265966_75271979_75272062_75272709_75272753_75273890_75274046_75275687
transcript_77243.known	chr6	-	1725	8	FSM	ENSMUSG00000068329.13	ENSMUST00000089645.13	1725	8	0	0	0	0	multi-exon	FALSE	canonical	3	429	junction_7	63.5991913695225	2016	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGGTTGGATCTTCTCC	1897	False	NA	2	True	AATAAA	-31	NA	83031552	83028246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_83028616_83028722_83028819_83029453_83029524_83029678_83029785_83030018_83030052_83030309_83030505_83030593_83030799_83030901
transcript_77244.known	chr6	+	1491	12	FSM	ENSMUSG00000068328.11	ENSMUST00000203915.4	1491	12	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_10	313.3608012109	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTCTCTGTTGCCTCT	5423	False	NA	5	True	ATTAAA	-15	NA	83031711	83034659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_83031814_83031891_83032030_83032109_83032261_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034194_83034376_83034478
transcript_77245.known	chr6	+	1769	12	FSM	ENSMUSG00000068328.11	ENSMUST00000092618.10	1769	12	0	0	0	0	multi-exon	TRUE	canonical	3	960	junction_10	78.8006166859286	1188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACTGGATCCCAGCTCAAT	5213	False	NA	NA	False	ACTAAA	-13	NA	83031501	83034789	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_83031814_83031891_83032030_83032109_83032261_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
transcript_77246.known	chr6	+	1265	11	FSM	ENSMUSG00000068328.11	ENSMUST00000204343.4	1265	11	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_2	333.699805214207	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCTGTTGCCTCTTTGG	5440	False	NA	9	True	ATTAAA	-19	NA	83031728	83034663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_83031814_83031891_83032030_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
transcript_77247.known	chr6	+	737	5	FSM	ENSMUSG00000068328.11	ENSMUST00000203331.3	737	5	0	0	0	0	multi-exon	FALSE	canonical	3	960	junction_3	76.3560737597213	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCCCAATCTCACATTAAA	578	False	NA	-29	True	AAAAAG	-14	NA	83033390	83034625	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
transcript_77249.nnic	chr6	+	1084	4	NNC	ENSMUSG00000009145.7	novel	1032	4	NA	NA	-51	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_2	2.16024689946929	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCTTATAATTGTAGAGCT	806	False	NA	NA	False	AATAAA	-25	NA	83035026	83036969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_83035121_83035470_83035717_83035897_83036092_83036419
transcript_77252.known	chr6	+	1032	4	FSM	ENSMUSG00000009145.7	ENSMUST00000204803.2	1032	4	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	3.68178700572909	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCTTATAATTGTAGAGCT	857	False	NA	NA	False	AATAAA	-25	NA	83035077	83036969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_83035121_83035471_83035717_83035897_83036092_83036419
transcript_77253.known	chr6	+	854	9	FSM	ENSMUSG00000069678.11	ENSMUST00000177177.8	854	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	65.3345955447801	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTTCATCTTCCTTCTTA	101	False	NA	23	True	AATAAA	-15	NA	83055610	83057835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_83055681_83055875_83055982_83056096_83056250_83056414_83056487_83056620_83056727_83056902_83056937_83057034_83057122_83057530_83057612_83057690
transcript_77254.known	chr6	+	866	9	FSM	ENSMUSG00000069678.11	ENSMUST00000092614.9	866	9	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_1	14.5408906192159	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCACTTTTCATCTTC	150	False	NA	16	True	AATAAA	-8	NA	83055370	83057828	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_83055460_83055875_83055982_83056096_83056250_83056414_83056487_83056620_83056727_83056902_83056937_83057034_83057122_83057530_83057612_83057690
transcript_77255.known	chr6	+	817	2	FSM	ENSMUSG00000034968.4	ENSMUST00000041265.4	817	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCCTCAATTCGGAAAGC	5261	False	NA	NA	False	AATAAA	-22	NA	83063347	83065224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_83063604_83064663
transcript_77258.known	chr6	-	891	3	FSM	ENSMUSG00000087578.2	ENSMUST00000125657.2	891	3	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_2	2	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATGGGGTGGGAAGAA	NA	False	NA	NA	False	NA	NA	NA	83086035	83083588	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_83084172_83084723_83084788_83085791
transcript_77260.known	chr6	-	600	3	FSM	ENSMUSG00000087578.2	ENSMUST00000138422.2	600	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAGGCACATGACAAGTCA	NA	False	NA	NA	False	NA	NA	NA	83085968	83083847	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_83084172_83084723_83084896_83085864
transcript_77261.known	chr6	-	742	2	FSM	ENSMUSG00000087578.2	ENSMUST00000141639.2	742	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCTTTTTTTAAAAAATGG	NA	False	NA	NA	False	NA	NA	NA	83086034	83083599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_83084172_83085864
transcript_77262.known	chr6	+	695	3	FSM	ENSMUSG00000030037.10	ENSMUST00000113938.5	695	3	0	0	0	0	multi-exon	FALSE	canonical	3	747	junction_2	17.5	7333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTATTTTTCTCAGGTTGT	7383	False	NA	NA	False	ATTAAA	-19	NA	83086020	83086920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_83086185_83086294_83086408_83086502
transcript_77263.known	chr6	+	710	2	FSM	ENSMUSG00000030037.10	ENSMUST00000129656.2	710	2	0	0	0	0	multi-exon	FALSE	canonical	3	782	junction_1	0	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTATTTTTCTCAGGTTGT	7463	False	NA	NA	False	ATTAAA	-19	NA	83086100	83086920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_83086185_83086294
transcript_77265.known	chr6	+	2780	4	FSM	ENSMUSG00000030036.9	ENSMUST00000032114.8	2780	4	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_2	15.1070255914995	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACCCCTTGCTTTAGACA	5173	False	NA	28	True	AATAAA	-17	NA	83092476	83095879	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_83092908_83092999_83093230_83093608_83093806_83093957
transcript_77267.known	chr6	-	981	5	FSM	ENSMUSG00000030035.15	ENSMUST00000146328.4	981	5	0	0	0	0	multi-exon	TRUE	canonical	3	42	junction_4	48.7769156466458	592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTCCTCCCATGGGGCTG	NA	False	NA	NA	False	NA	NA	NA	83098368	83096287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_83096702_83096848_83097026_83097165_83097269_83097752_83097855_83098183
transcript_77272.known	chr6	-	1314	4	FSM	ENSMUSG00000030035.15	ENSMUST00000113936.10	1314	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_3	56.6627449623354	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTGATTCTGGGTAGAG	NA	False	NA	-7	True	ATTAAA	-17	NA	83098540	83096024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_83096702_83096848_83097026_83097165_83097269_83098183
transcript_77273.known	chr6	-	1902	4	FSM	ENSMUSG00000030035.15	ENSMUST00000131939.6	1902	4	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_3	19.1369334592098	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGTGATTCTGGGTAGA	NA	False	NA	-8	True	ATTAAA	-16	NA	83098540	83096025	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_83096702_83096848_83097026_83097165_83097858_83098183
transcript_77278.known	chr6	-	462	2	FSM	ENSMUSG00000030035.15	ENSMUST00000123394.2	462	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGGCTACCCTTGGACT	NA	False	NA	NA	False	NA	NA	NA	83098240	83096620	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_83097026_83098183
transcript_77280.known	chr6	+	2597	13	FSM	ENSMUSG00000034930.17	ENSMUST00000121093.8	2597	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	26.6061814037432	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTCTTTCACTTGTCTT	4806	False	NA	18	True	ATTAAA	-18	NA	83114069	83129560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_83114438_83114941_83115228_83122911_83123112_83124469_83124532_83124632_83124687_83124808_83124927_83125086_83125297_83126444_83126540_83126652_83126760_83126952_83127082_83127888_83128058_83128217_83128323_83128866
transcript_77281.known	chr6	+	2191	12	FSM	ENSMUSG00000034930.17	ENSMUST00000065512.11	2191	12	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	17.934223251548	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTCTTTCACTTGTCTT	3529	False	NA	18	True	ATTAAA	-18	NA	83112792	83129560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_83113041_83122911_83123112_83124469_83124532_83124632_83124687_83124808_83124927_83125086_83125297_83126444_83126540_83126652_83126760_83126952_83127082_83127888_83128058_83128217_83128323_83128866
transcript_77282.known	chr6	+	3080	12	FSM	ENSMUSG00000034930.17	ENSMUST00000087938.11	3080	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	21.3022328399382	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTCTTTCACTTGTCTT	4827	False	NA	18	True	ATTAAA	-18	NA	83114090	83129560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_83115228_83122911_83123112_83124469_83124532_83124632_83124687_83124808_83124927_83125086_83125297_83126444_83126540_83126652_83126760_83126952_83127082_83127888_83128058_83128217_83128323_83128866
transcript_77283.nic	chr6	+	2288	12	NIC	ENSMUSG00000034930.17	novel	653	6	NA	NA	-175	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	15.2196045821291	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTCTTTCACTTGTCTT	1475	False	NA	18	True	ATTAAA	-18	NA	83119197	83129560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_83119543_83122911_83123112_83124469_83124532_83124632_83124687_83124808_83124927_83125086_83125297_83126444_83126540_83126652_83126760_83126952_83127082_83127888_83128058_83128217_83128323_83128866
transcript_77286.nic	chr6	+	2051	11	ISM	ENSMUSG00000034930.17	ENSMUST00000087938.11	3080	12	8713	0	-2012	0	3prime_fragment	FALSE	canonical	3	54	junction_8	8.87693640846886	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTCTTTCACTTGTCTT	1061	False	NA	18	True	ATTAAA	-18	NA	83122803	83129560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_83123112_83124469_83124532_83124632_83124687_83124808_83124927_83125086_83125297_83126444_83126540_83126652_83126760_83126952_83127082_83127888_83128058_83128217_83128323_83128866
transcript_77287.nnic	chr6	-	1172	11	NNC	ENSMUSG00000030032.15	novel	1216	11	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_1	12.5574678976297	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTGTCTGAGCACTCAG	9887	False	NA	0	True	TATAAA	-18	NA	83133374	83129690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_83129840_83129956_83130032_83130234_83130398_83130497_83130599_83131481_83131610_83131903_83131958_83132051_83132119_83132459_83132523_83132630_83132854_83133156_83133228_83133296
transcript_77288.nic	chr6	-	1135	11	NIC	ENSMUSG00000030032.15	novel	1216	11	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_9	13.4298175713596	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTGTCTGAGCACTCAG	9887	False	NA	0	True	TATAAA	-18	NA	83133374	83129690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_83129879_83129956_83130032_83130234_83130398_83130497_83130599_83131481_83131610_83131903_83131958_83132051_83132119_83132459_83132523_83132630_83132778_83133156_83133228_83133296
transcript_77290.known	chr6	-	1216	11	FSM	ENSMUSG00000030032.15	ENSMUST00000125894.9	1216	11	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_10	9.65453261426984	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTGTCTGAGCACTCAG	9882	False	NA	0	True	TATAAA	-18	NA	83133379	83129690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_83129879_83129956_83130032_83130234_83130398_83130497_83130599_83131481_83131610_83131903_83131958_83132051_83132119_83132459_83132523_83132630_83132854_83133156_83133228_83133296
transcript_77293.nic	chr6	-	1315	11	NIC	ENSMUSG00000030032.15	novel	1216	11	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_7	13.7786066058945	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTGTCTGAGCACTCAG	9887	False	NA	0	True	TATAAA	-18	NA	83133374	83129690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_83129879_83129956_83130032_83130234_83130398_83130497_83130599_83131481_83131610_83131903_83131958_83132051_83132223_83132459_83132523_83132630_83132854_83133156_83133228_83133296
transcript_773.known	chr1	-	1894	5	FSM	ENSMUSG00000033845.14	ENSMUST00000130201.8	1894	5	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	911.97762445139	585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTAAAACTCTCCCTCTTC	1649	False	NA	NA	False	AATAAA	-22	NA	4855933	4843428	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_4844740_4847747_4847872_4852790_4852957_4854173_4854329_4855795
transcript_77303.known	chr6	+	4118	28	FSM	ENSMUSG00000031865.17	ENSMUST00000077407.12	4118	28	0	0	0	0	multi-exon	TRUE	canonical	3	372	junction_1	39.6793042772762	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTGTCTGTGTGGCTCT	493	False	NA	NA	False	ATTAAA	-15	NA	83142901	83177098	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_83142977_83159505_83159752_83160040_83160120_83160280_83160316_83166058_83166251_83166529_83166728_83166882_83167088_83167184_83167264_83167402_83167563_83167674_83167780_83167950_83168143_83168226_83168344_83168547_83168701_83169441_83169603_83169715_83169885_83170688_83170758_83170940_83171004_83171101_83171252_83171411_83171574_83171655_83171788_83171969_83172096_83172529_83172673_83172922_83173090_83174472_83174607_83174737_83174931_83175563_83175644_83176169_83176260_83176655
transcript_77306.nnic	chr6	+	501	4	NNC	ENSMUSG00000031865.17	novel	4163	32	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	204.335236532735	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTCTGTGTGGCTCTG	504	False	NA	NA	False	ATTAAA	-16	NA	83142912	83177099	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_83142977_83159505_83159752_83160040_83160120_83176987
transcript_7732.known	chr10	+	3036	4	FSM	ENSMUSG00000020180.11	ENSMUST00000020397.11	3036	4	0	0	0	0	multi-exon	FALSE	canonical	3	3512	junction_3	116.998575489904	10703	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTGATTATTCCAAGACT	1402	False	NA	NA	False	AATAAA	-17	NA	75353384	75373215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_75353960_75355147_75355295_75368010_75368204_75371094
transcript_77323.known	chr6	-	2085	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	0	0	0	0	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	3486	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTTGTCTCAGTCAGAC	NA	False	NA	2	True	AATAAA	-35	NA	83294588	83282672	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
transcript_77324.known	chr6	+	4412	6	FSM	ENSMUSG00000043131.15	ENSMUST00000055261.11	4412	6	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_4	40.3554209493595	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCATTTATTATCTACGTC	NA	False	NA	98	True	ATTAAA	-21	NA	83302997	83320758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_83303250_83306848_83307016_83309435_83309530_83311057_83311192_83315262_83315427_83317157
transcript_77327.nic	chr6	+	590	3	ISM	ENSMUSG00000043131.15	ENSMUST00000146420.7	749	4	16	1801	-2	95	5prime_fragment	FALSE	canonical	3	307	junction_1	28.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATGTAGAGCTAATTCTG	NA	False	NA	NA	False	AATAAA	-20	NA	83303015	83309624	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_83303250_83306848_83307016_83309435
transcript_77328.known	chr6	+	749	4	FSM	ENSMUSG00000043131.15	ENSMUST00000146420.7	749	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	159.858965619351	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCGTGTGCCACAGCATA	NA	False	NA	NA	False	AATAAA	-20	NA	83302999	83311425	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_83303250_83306848_83307016_83309435_83309530_83311187
transcript_7733.known	chr10	+	442	4	FSM	ENSMUSG00000020180.11	ENSMUST00000220229.2	442	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	1763.59254553501	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTTGATAAACTGTTAAG	1894	False	NA	-15	True	NA	NA	NA	75353876	75371252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_75353960_75355147_75355295_75368010_75368065_75371094
transcript_77330.known	chr6	+	554	4	FSM	ENSMUSG00000045160.15	ENSMUST00000122216.8	554	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	479.669330546228	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATGTGCCATGCTTCAGG	50	False	NA	26	True	ATTAAA	-26	NA	83326128	83335378	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_83326220_83328247_83328372_83330023_83330113_83335128
transcript_77331.known	chr6	+	583	4	FSM	ENSMUSG00000045160.15	ENSMUST00000120040.8	583	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	479.669330546228	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCACAGGTGCCTCCTGCT	119	False	NA	1	True	ATTAAA	-1	NA	83326197	83335353	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_83326343_83328247_83328372_83330023_83330113_83335128
transcript_77335.known	chr6	+	2312	4	FSM	ENSMUSG00000045160.15	ENSMUST00000136501.2	2312	4	0	0	0	0	multi-exon	FALSE	canonical	3	755	junction_1	124.478467571259	1331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGACTTCCATTCATGAC	349	False	NA	NA	False	AATATA	-32	NA	83326427	83337118	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_83326537_83328247_83328372_83330023_83330113_83335128
transcript_77337.known	chr6	-	2523	4	FSM	ENSMUSG00000034832.16	ENSMUST00000056191.2	2523	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.4142135623731	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAGAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	83418660	83375420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_83375600_83379648_83381807_83418198_83418256_83418531
transcript_77350.known	chr6	-	1107	7	FSM	ENSMUSG00000014554.14	ENSMUST00000014698.10	1107	7	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_5	13.5369863706809	1045	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGTTCGTTTATTTC	NA	False	NA	-3	True	AATAAA	-23	NA	83483951	83457198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_83457419_83457824_83457925_83458328_83458445_83463965_83464114_83467402_83467591_83473667_83473781_83483729
transcript_77353.known	chr6	-	828	7	FSM	ENSMUSG00000014554.14	ENSMUST00000138941.3	828	7	0	0	0	0	multi-exon	TRUE	canonical	3	8	junction_3	102.417446430446	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGGGTGTGTGCTGTCT	NA	False	NA	-39	True	NA	NA	NA	83483803	83457290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_83457419_83458328_83458445_83458759_83458821_83463965_83464114_83467402_83467591_83473667_83473781_83483729
transcript_77356.nic	chr6	-	1001	6	NIC	ENSMUSG00000014554.14	novel	1107	7	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_5	77.3356321497406	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGTTCGTTTATTTC	NA	False	NA	-3	True	AATAAA	-23	NA	83483958	83457198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_83457419_83457824_83457925_83458328_83458445_83463965_83464114_83467402_83467591_83483729
transcript_7736.nic	chr10	+	2315	15	NIC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	-103	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	94.4297600962574	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGGACTTTAGTGTCT	NA	False	NA	27	True	NA	NA	NA	75399878	75422025	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_+_75400093_75400654_75400740_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
transcript_77363.known	chr6	-	1007	6	FSM	ENSMUSG00000014554.14	ENSMUST00000113888.3	1007	6	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	78.3019795407498	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGTTCGTTTATTTC	NA	False	NA	-3	True	AATAAA	-23	NA	83483951	83457198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_83457419_83458328_83458445_83463965_83464114_83467402_83467591_83473667_83473781_83483729
transcript_77374.known	chr6	-	561	2	FSM	ENSMUSG00000014554.14	ENSMUST00000147060.2	561	2	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAACTCATTGTCAACCAG	NA	False	NA	NA	False	NA	NA	NA	83483889	83467189	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_83467591_83483729
transcript_77376.known	chr6	-	2364	10	FSM	ENSMUSG00000006906.11	ENSMUST00000068054.9	2364	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	7.14920352984241	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGCTCCAGAGTGATT	NA	False	NA	-17	True	AATAAA	-13	NA	83549711	83520205	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_83521019_83524212_83524313_83528925_83529039_83533256_83533395_83534418_83534544_83538656_83539024_83540804_83540901_83541162_83541239_83547284_83547502_83549392
transcript_77399.nnic	chr6	+	771	3	NNC	ENSMUSG00000034777.3	novel	1242	3	NA	NA	-82	-4557	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	57	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAATGCCCCGTGTGGAA	NA	False	NA	NA	False	NA	NA	NA	83688163	83710738	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_83688526_83710080_83710269_83710517
transcript_774.known	chr1	-	910	5	FSM	ENSMUSG00000033845.14	ENSMUST00000115538.5	910	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	946.266446356416	1567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACTGCTCAGGTCTTTTG	1620	False	NA	-10	True	ATTAAA	-22	NA	4855962	4846599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_4847025_4847747_4847872_4852790_4852830_4854173_4854329_4855795
transcript_77400.known	chr6	+	1242	3	FSM	ENSMUSG00000034777.3	ENSMUST00000037807.3	1242	3	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	5	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTTCTGTCCCTGTTCT	NA	False	NA	21	True	AATAAA	-32	NA	83688245	83715295	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_83688526_83710080_83710269_83714521
transcript_77402.known	chr6	-	4063	2	FSM	ENSMUSG00000085794.6	ENSMUST00000155159.4	4063	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAACAAAAGTTTCAAA	NA	False	NA	NA	False	NA	NA	NA	83687914	83677138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_83681003_83687715
transcript_77404.known	chr6	-	546	2	FSM	ENSMUSG00000099354.7	ENSMUST00000189308.3	546	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATGGCTGGTGACCCTCA	NA	False	NA	NA	False	AATAAA	-21	NA	83739824	83738737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_83739043_83739583
transcript_77413.known	chr6	-	2984	6	FSM	ENSMUSG00000014748.14	ENSMUST00000014892.8	2984	6	0	0	0	0	multi-exon	FALSE	canonical	3	526	junction_1	47.9474712576169	1095	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCTGTAGTGTGTGACC	9712	False	NA	-4	True	NA	NA	NA	83752795	83745866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_83748286_83748428_83748532_83749223_83749292_83750691_83750846_83751999_83752080_83752635
transcript_77414.known	chr6	-	2265	4	FSM	ENSMUSG00000014748.14	ENSMUST00000125614.8	2265	4	0	0	0	0	multi-exon	FALSE	canonical	3	553	junction_1	49.358101890391	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9735	False	NA	NA	False	AAAAAG	-38	NA	83752772	83747397	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_83749292_83750691_83750846_83751999_83752080_83752635
transcript_77420.known	chr6	+	1323	10	FSM	ENSMUSG00000034744.14	ENSMUST00000113851.8	1323	10	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	71.6054001687955	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCAGGGTGTCATCTTCCA	9304	False	NA	11	True	AATAAA	-19	NA	83772009	83779536	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_83772231_83773888_83773974_83774158_83774258_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
transcript_77426.known	chr6	+	1049	10	FSM	ENSMUSG00000034744.14	ENSMUST00000146117.8	1049	10	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	70.680816193489	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAAGTTGCGGCATTCTT	9484	False	NA	NA	False	NA	NA	NA	83772189	83779316	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_83772357_83773888_83773974_83774158_83774258_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
transcript_7744.known	chr10	+	2140	14	FSM	ENSMUSG00000006345.11	ENSMUST00000134503.8	2140	14	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	59.3897965057474	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAGTGTCTTGTGTATGA	NA	False	NA	36	True	NA	NA	NA	75404489	75422034	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_75404605_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
transcript_77440.known	chr6	+	1405	10	FSM	ENSMUSG00000034744.14	ENSMUST00000037376.14	1405	10	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_1	21.8281729836116	784	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGGTGTCATCTTCCATA	9258	False	NA	13	True	AATAAA	-21	NA	83771963	83779538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_83772265_83773888_83773974_83774158_83774258_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
transcript_77441.known	chr6	-	3982	5	FSM	ENSMUSG00000045896.15	ENSMUST00000058383.9	3982	5	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_4	4.71036092035419	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCTGGCCTCTGTCTATC	NA	False	NA	NA	False	AATAAA	-13	NA	83808723	83782382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_83785875_83786880_83787058_83791703_83791852_83808252_83808311_83808616
transcript_77443.nnic	chr6	-	704	5	NNC	ENSMUSG00000045896.15	novel	649	4	NA	NA	-25	-272	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	34.6229692545281	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTGGCATTGTTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	83808748	83785909	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_83786099_83786880_83787058_83791703_83791852_83808252_83808311_83808616
transcript_77444.known	chr6	-	649	4	FSM	ENSMUSG00000045896.15	ENSMUST00000145593.8	649	4	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_3	4.98887651569859	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGGTTAGAAGCCTGAA	NA	False	NA	NA	False	NA	NA	NA	83808695	83786693	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_83787058_83791703_83791852_83808252_83808311_83808616
transcript_77446.known	chr6	+	547	1	FSM	ENSMUSG00000108107.3	ENSMUST00000203728.3	547	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	96	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGATCTTACTGTTAATAA	NA	False	NA	NA	False	NA	NA	NA	83818663	83819210	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_83818700_83819200
transcript_77457.known	chr6	+	3300	2	FSM	ENSMUSG00000030016.15	ENSMUST00000204580.3	3300	2	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGAAAAAGAAAAACAAATAT	NA	False	NA	NA	False	NA	NA	NA	83891352	83908825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_83891462_83905634
transcript_77458.known	chr6	+	4366	26	FSM	ENSMUSG00000030016.15	ENSMUST00000113836.6	4366	26	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_22	87.4304294853914	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACTGTTGTGTTTGTGTT	NA	False	NA	NA	False	AATAAA	-20	NA	83891371	83963851	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83933675_83933745_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83953337_83958663_83958768_83960957_83961057_83961758_83961878_83963539
transcript_77460.nnic	chr6	-	1771	2	Genic_Genomic	ENSMUSG00000079501.4	novel	1002	1	NA	NA	-21984	196	multi-exon	FALSE	canonical	0	0	junction_1	0	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAAGGTCTGAGATCATGA	NA	False	NA	NA	False	AATAAA	-30	NA	83874346	83851164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr6_-_83852489_83873899
transcript_77461.nnic	chr6	-	1798	2	Genic_Genomic	ENSMUSG00000079501.4	novel	1002	1	NA	NA	-21984	190	multi-exon	FALSE	canonical	0	0	junction_1	0	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAACCCAAAGGTCTGAGA	NA	False	NA	NA	False	AATAAA	-24	NA	83874346	83851170	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr6_-_83852548_83873925
transcript_77462.known	chr6	-	5439	22	FSM	ENSMUSG00000033769.17	ENSMUST00000160197.6	5439	22	0	0	0	0	multi-exon	TRUE	canonical	3	201	junction_13	26.9684454901315	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGTTGTCTTGTGAGAT	NA	False	NA	-2	True	ATTAAA	-30	NA	85046495	84595468	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_84598494_84602106_84602220_84723882_84723957_84768222_84768365_84812022_84812203_84820990_84821126_84825747_84825860_84828832_84828943_84830558_84830665_84831682_84831781_84832456_84832529_84835369_84835491_84837154_84837202_84837616_84837701_84867498_84867568_84885094_84885272_84966306_84966512_84980029_84980076_84980176_84980268_84981970_84982019_84988299_84988466_85046277
transcript_77468.nic	chr6	-	1077	8	ISM	ENSMUSG00000033769.17	ENSMUST00000046334.15	3540	17	-66	56264	-10	-496	5prime_fragment	FALSE	canonical	3	217	junction_2	23.9863906992175	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGAGTTGTTATTATTAT	NA	False	NA	NA	False	AATAAA	-19	NA	85046505	84867451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_84867568_84885094_84885272_84966306_84966512_84980029_84980076_84980176_84980268_84981970_84982019_84988299_84988466_85046277
transcript_77478.known	chr6	-	565	3	FSM	ENSMUSG00000033769.17	ENSMUST00000162786.2	565	3	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_1	24	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAATCATTGAGTAGT	NA	False	NA	NA	False	AATAAA	-31	NA	85046457	84981799	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_84982019_84988299_84988466_85046277
transcript_77479.nnic	chr6	-	1047	3	NNC	ENSMUSG00000033769.17	novel	5439	22	NA	NA	-2	-54325	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0.5	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACAAAGTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	85046459	85036124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_85036745_85038698_85038944_85046277
transcript_77489.known	chr6	-	1029	3	FSM	ENSMUSG00000033735.10	ENSMUST00000174769.2	1029	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	177.5	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATGCAATAGAGTGTGCG	7992	False	NA	NA	False	AATACA	-12	NA	85114738	85110668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_85111271_85113804_85113914_85114420
transcript_77495.known	chr6	-	1230	3	FSM	ENSMUSG00000033735.10	ENSMUST00000045986.8	1230	3	0	0	0	0	multi-exon	FALSE	canonical	3	345	junction_2	5	3837	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGAGTGTGCGTTGTCCTTC	7982	False	NA	NA	False	AATACA	-21	NA	85114748	85110659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_85111271_85113804_85114096_85114420
transcript_77496.known	chr6	-	775	4	FSM	ENSMUSG00000033735.10	ENSMUST00000174286.3	775	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	165.042082175695	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGCCAGTCCTCGGAAGG	7986	False	NA	NA	False	NA	NA	NA	85114744	85110981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_85111271_85113804_85113914_85114042_85114096_85114420
transcript_775.known	chr1	-	1569	4	FSM	ENSMUSG00000033845.14	ENSMUST00000146665.3	1569	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	1077.56031024821	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTATATAAGAGTTTTGTC	1620	False	NA	NA	False	TTTAAA	-22	NA	4855962	4851443	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_4852525_4852790_4852957_4854173_4854329_4855795
transcript_77500.known	chr6	-	514	4	FSM	ENSMUSG00000033720.13	ENSMUST00000113788.2	514	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	3.2659863237109	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTTGCATCATGGCTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	85310404	85276064	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_85276317_85276521_85276600_85296503_85296573_85310289
transcript_77502.nic	chr6	-	381	3	NIC	ENSMUSG00000033720.13	novel	638	3	NA	NA	-99	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	4	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	85310503	85295853	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_85295952_85296503_85296573_85310289
transcript_77503.known	chr6	-	1081	13	FSM	ENSMUSG00000033720.13	ENSMUST00000059034.13	1081	13	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	2.88193607763176	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAATGATCTCCCTGGCTC	NA	False	NA	NA	False	AATAAA	-14	NA	85310401	85211361	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_85211606_85211744_85211831_85213821_85213938_85233324_85233416_85244853_85244920_85246079_85246137_85246891_85246946_85264031_85264058_85266158_85266214_85266743_85266771_85276521_85276600_85296503_85296573_85310289
transcript_77505.known	chr6	+	2486	13	FSM	ENSMUSG00000033706.14	ENSMUST00000045693.8	2486	13	0	0	0	0	multi-exon	FALSE	canonical	3	411	junction_7	60.725246442938	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAACAATGCCTTGTGGGG	NA	False	NA	28	True	AATAAA	-22	NA	85408970	85423417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_85409083_85415089_85415199_85415731_85415872_85416638_85416758_85417087_85417158_85417621_85417727_85418541_85418605_85418719_85418791_85419092_85419200_85419580_85419638_85421224_85421320_85421899_85421971_85422050
transcript_77515.known	chr6	+	746	1	FSM	ENSMUSG00000033706.14	ENSMUST00000204615.2	746	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-2	NA	85409054	85409800	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_85409100_85409800
transcript_77519.known	chr6	-	1038	5	FSM	ENSMUSG00000030008.10	ENSMUST00000032080.9	1038	5	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_4	18.9786063766547	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGGTTTGTGCCTGTGTCC	NA	False	NA	NA	False	AATAAA	-16	NA	85428265	85423791	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_85424280_85424502_85424671_85424917_85425028_85425472_85425574_85428094
transcript_7752.known	chr10	+	820	3	FSM	ENSMUSG00000006345.11	ENSMUST00000156487.2	820	3	0	0	0	0	multi-exon	FALSE	canonical	3	347	junction_1	12.5	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGGACTTTAGTGTCT	NA	False	NA	27	True	NA	NA	NA	75420938	75422025	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_75421334_75421424_75421539_75421714
transcript_77524.known	chr6	-	610	4	FSM	ENSMUSG00000030008.10	ENSMUST00000113770.2	610	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	62.7180640290782	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGGCCTCAAGGACATCT	NA	False	NA	NA	False	NA	NA	NA	85428230	85424016	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_85424280_85424917_85425028_85425472_85425574_85428094
transcript_77525.known	chr6	-	955	4	FSM	ENSMUSG00000030008.10	ENSMUST00000146086.8	955	4	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_3	20.8219969156552	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGCCTCAAGGACATCTC	NA	False	NA	NA	False	NA	NA	NA	85428183	85424015	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_85424671_85424917_85425028_85425472_85425574_85428094
transcript_77530.known	chr6	-	339	3	FSM	ENSMUSG00000030008.10	ENSMUST00000122907.2	339	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	3	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCTCTCTAAGACCAGGG	NA	False	NA	NA	False	GGGGCT	-5	NA	85428195	85424661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_85424790_85424917_85425028_85428094
transcript_77532.known	chr6	+	2441	12	FSM	ENSMUSG00000030007.9	ENSMUST00000032078.9	2441	12	0	0	0	0	multi-exon	FALSE	canonical	3	5555	junction_1	301.70819463638	37924	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGCTCTGCTGTGATGG	4610	False	NA	16	True	AGTAAA	-18	NA	85428495	85445457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
transcript_77533.known	chr6	-	953	5	FSM	ENSMUSG00000030008.10	ENSMUST00000126805.8	953	5	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_4	38.4991883031318	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCAGCTCCCAGCAGCC	NA	False	NA	NA	False	NA	NA	NA	85428952	85423919	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_85424280_85424502_85424671_85424917_85425028_85425472_85425574_85428738
transcript_77535.known	chr6	-	3019	4	FSM	ENSMUSG00000068299.12	ENSMUST00000095757.4	3019	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	4.49691252107735	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCGGGTGGATCTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	85881866	85876032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_85878596_85878934_85879080_85879173_85879312_85881693
transcript_77539.known	chr6	+	2222	7	FSM	ENSMUSG00000054226.14	ENSMUST00000113753.8	2222	7	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	87.3983536585342	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTTATTATGTC	3409	False	NA	24	True	NA	NA	NA	85892719	85907266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_85892773_85896898_85897007_85898404_85898494_85901341_85901505_85904222_85904346_85904789_85904967_85905757
transcript_7754.nic	chr10	+	657	2	ISM	ENSMUSG00000006344.18	ENSMUST00000218807.2	2051	11	20739	0	6259	0	3prime_fragment	FALSE	canonical	1	1	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATTTGGTGGTTCTAAGC	NA	False	NA	NA	False	ATTAAA	-19	NA	75446173	75451021	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_75446373_75450563
transcript_7755.known	chr10	-	3151	15	FSM	ENSMUSG00000006342.16	ENSMUST00000095541.11	3151	15	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_6	11.246768243294	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGTTCCCGTCTGTTTGT	NA	False	NA	-1	True	NA	NA	NA	75479825	75472539	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_75473205_75473334_75473441_75473515_75473693_75473798_75474072_75474180_75474430_75475175_75475335_75475428_75475573_75475667_75475937_75476022_75476109_75476289_75476492_75476608_75476784_75477266_75477435_75477958_75478111_75478296_75478505_75479707
transcript_77558.known	chr6	-	274	3	FSM	ENSMUSG00000057103.12	ENSMUST00000172982.2	274	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACCAGATTCTAATGCATG	9885	False	NA	NA	False	NA	NA	NA	85892648	85887143	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_85887260_85887977_85888003_85892515
transcript_77559.known	chr6	-	1008	2	FSM	ENSMUSG00000057103.12	ENSMUST00000239124.2	1008	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTCTAATGCATGTGATG	9874	False	NA	NA	False	NA	NA	NA	85892659	85887138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_85888003_85892515
transcript_77560.known	chr6	+	2103	6	FSM	ENSMUSG00000054226.14	ENSMUST00000067137.14	2103	6	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	21.35790251874	500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGCCTTGGTTATTATG	3418	False	NA	22	True	NA	NA	NA	85892728	85907264	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_85892773_85898404_85898494_85901341_85901505_85904222_85904346_85904789_85904967_85905757
transcript_77561.known	chr6	+	1216	6	FSM	ENSMUSG00000054226.14	ENSMUST00000089570.7	1216	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	87.3026918256247	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTAGATTTGGACTCTTA	3418	False	NA	NA	False	ATTAAA	-18	NA	85892728	85905502	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_85892773_85898404_85898494_85900114_85900199_85901341_85901505_85904222_85904346_85904789
transcript_77562.known	chr6	+	749	5	FSM	ENSMUSG00000054226.14	ENSMUST00000113752.8	749	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	82.1960309260733	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CCAAAAAAAAAAAAAAATTA	3426	False	NA	NA	False	NA	NA	NA	85892736	85906007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_85892773_85901341_85901505_85904222_85904346_85904789_85904967_85905757
transcript_77563.known	chr6	+	475	5	FSM	ENSMUSG00000054226.14	ENSMUST00000201939.4	475	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	80.0218720100948	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACCACAGGAACACCTAGT	3428	False	NA	NA	False	NA	NA	NA	85892738	85904873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_85892773_85898404_85898494_85901341_85901505_85904240_85904346_85904789
transcript_77564.known	chr6	-	6435	9	FSM	ENSMUSG00000030002.16	ENSMUST00000032071.13	6435	9	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_7	14.8070928949608	534	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTGTACTATCTTGTATT	7320	False	NA	2	True	NA	NA	NA	85938649	85919249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_85924759_85926599_85926780_85926999_85927076_85927495_85927543_85929286_85929348_85930352_85930477_85935565_85935698_85936197_85936274_85938419
transcript_77565.known	chr6	+	759	3	FSM	ENSMUSG00000030001.5	ENSMUST00000032070.4	759	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTTGCTTGGAGATGA	NA	False	NA	NA	False	ATTAAA	-22	NA	85994172	85997978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_85994440_85995560_85995714_85997639
transcript_77566.known	chr6	+	210	1	FSM	ENSMUSG00000072940.6	ENSMUST00000119024.2	210	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	564	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGCAGCTGGGTTCTGGA	NA	False	NA	NA	False	NA	NA	NA	86311012	86311222	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_86311000_86311200
transcript_77569.known	chr6	+	1306	1	FSM	ENSMUSG00000057497.9	ENSMUST00000203237.2	1306	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAATTCCTTAAAATGTA	8685	False	NA	2	True	AATACA	-17	NA	86342695	86344001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_86342700_86344000
transcript_7757.known	chr10	-	2275	13	FSM	ENSMUSG00000006342.16	ENSMUST00000077610.6	2275	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_12	20.894410470001	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAATACCTGTCCTAGCCTG	NA	False	NA	NA	False	NA	NA	NA	75479814	75473044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_75473205_75473334_75473441_75473515_75473693_75473798_75474072_75474180_75474430_75475175_75475335_75475428_75475573_75475667_75475937_75476022_75476109_75476289_75476492_75476608_75476784_75477266_75477435_75479707
transcript_77570.known	chr6	+	1643	3	FSM	ENSMUSG00000057497.9	ENSMUST00000071492.9	1643	3	0	0	0	0	multi-exon	FALSE	canonical	3	1740	junction_2	62	1412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTTCTTATGGGTAGTG	8617	False	NA	32	True	AATAAA	-16	NA	86342627	86347040	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_86342802_86343591_86343733_86345712
transcript_77578.known	chr6	+	746	4	FSM	ENSMUSG00000057278.9	ENSMUST00000204380.3	746	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	1590.13130135708	2499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTTTCTGCTGTTGTGGA	NA	False	NA	29	True	AATAAA	-20	NA	86348552	86355889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_86348976_86352658_86352682_86353476_86353602_86355714
transcript_77579.known	chr6	+	375	4	FSM	ENSMUSG00000057278.9	ENSMUST00000204768.2	375	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1594.61865869764	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCATATGGAACTTTTT	NA	False	NA	-20	True	NA	NA	NA	86348585	86355840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_86348687_86352658_86352682_86353476_86353602_86355714
transcript_77584.known	chr6	-	4295	6	FSM	ENSMUSG00000029998.15	ENSMUST00000032065.15	4295	6	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_3	15.4012986465428	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	86374136	86362987	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_86366354_86368657_86368811_86369118_86369331_86371390_86371566_86372895_86373103_86373954
transcript_77589.nic	chr6	-	940	3	ISM	ENSMUSG00000029998.15	ENSMUST00000204116.2	546	4	-28	5377	-15	470	5prime_fragment	FALSE	canonical	3	179	junction_1	16.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	86374151	86371029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_86371566_86372895_86373103_86373954
transcript_7759.nic	chr10	-	1646	10	ISM	ENSMUSG00000020196.11	ENSMUST00000001712.8	7417	37	-13	99167	12	4787	5prime_fragment	FALSE	canonical	3	63	junction_8	9.01986833004551	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAGAAAGTGGATTTCCA	NA	False	NA	NA	False	NA	NA	NA	75600163	75581112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_75581232_75582321_75582609_75583659_75583810_75585877_75586008_75587269_75587451_75589210_75589346_75590084_75590199_75590645_75590739_75591202_75591335_75599858
transcript_77590.nnic	chr6	-	604	3	NNC	ENSMUSG00000029998.15	novel	485	2	NA	NA	-15	165	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	104.5	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTAGCTATTTATTTTG	NA	False	NA	NA	False	ATTAAA	-21	NA	86374151	86372599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_86372800_86372895_86373103_86373954
transcript_77591.known	chr6	-	485	2	FSM	ENSMUSG00000029998.15	ENSMUST00000203960.2	485	2	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCAGTTGGTCCCAGCTT	NA	False	NA	NA	False	NA	NA	NA	86374101	86372764	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_86373103_86373954
transcript_77594.nic	chr6	+	1846	14	NIC	ENSMUSG00000071337.12	novel	4477	13	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_7	51.8881363919042	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCAAACTTGTGCAAAGTC	9745	False	NA	NA	False	AATATA	-22	NA	86381264	86407754	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86396082_86396116_86397305_86397394_86400587_86400654_86401326_86401403_86401943_86402053_86402431_86402528_86402642_86402728_86403548_86403673_86404654_86404801_86407222
transcript_77596.known	chr6	+	4477	13	FSM	ENSMUSG00000071337.12	ENSMUST00000095753.9	4477	13	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_5	36.3397356744499	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTTAAAGTTCTTTTTT	9681	False	NA	NA	False	AATAAA	-15	NA	86381200	86410387	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86396082_86396116_86397305_86397394_86401326_86401403_86401943_86402053_86402431_86402528_86402642_86402728_86403548_86403673_86404654_86404801_86407222
transcript_7760.known	chr10	-	7417	37	FSM	ENSMUSG00000020196.11	ENSMUST00000001712.8	7417	37	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_35	14.4571258434836	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTCTTTGCTCATC	NA	False	NA	-4	True	AATAAA	-13	NA	75600150	75481945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_75482522_75482708_75482936_75483890_75484056_75488708_75488977_75491199_75491275_75492608_75493287_75493629_75493727_75494467_75494632_75520125_75520240_75530548_75530881_75535746_75535930_75549286_75549466_75551432_75551585_75553271_75553533_75557111_75557374_75561092_75561239_75561382_75561590_75562691_75562854_75568233_75568350_75569453_75569611_75570799_75571043_75573154_75573350_75574044_75574198_75575159_75575348_75575853_75575933_75578078_75578297_75579035_75579173_75581062_75581232_75582321_75582609_75583659_75583810_75585877_75586008_75587269_75587451_75589210_75589346_75590084_75590199_75590645_75590739_75591202_75591335_75599858
transcript_77602.known	chr6	+	3108	12	FSM	ENSMUSG00000071337.12	ENSMUST00000113713.9	3108	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	63.608175575157	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATTTCTTTGTAAACTT	9798	False	NA	17	True	AATAAA	-19	NA	86381317	86409162	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_86381505_86390785_86390889_86393284_86393384_86395859_86395915_86397305_86397394_86401326_86401403_86401943_86402053_86402431_86402528_86402642_86402728_86403548_86403673_86404654_86404801_86407222
transcript_77608.known	chr6	+	2630	11	FSM	ENSMUSG00000046679.17	ENSMUST00000141972.8	2630	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_7	10.36532681588	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGCCATTGATGTCATGA	1771	False	NA	NA	False	AATAAA	-26	NA	86415673	86447370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_86415830_86420708_86420958_86422415_86423251_86424292_86424404_86426742_86426848_86430590_86430696_86431241_86431296_86434797_86434906_86439562_86439664_86442782_86442946_86446727
transcript_7761.known	chr10	-	756	6	FSM	ENSMUSG00000092360.2	ENSMUST00000173512.2	756	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	188.192454684028	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGACATTTCTGTGACGG	NA	False	NA	NA	False	AAGAAA	-8	NA	75616788	75607284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_75607341_75608571_75608748_75611704_75611882_75612577_75612729_75613934_75614023_75616680
transcript_77610.known	chr6	+	2534	10	FSM	ENSMUSG00000046679.17	ENSMUST00000050497.14	2534	10	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_1	6.73483664919633	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGCCATTGATGTCATGA	1453	False	NA	NA	False	AATAAA	-26	NA	86415355	86447370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_86415470_86420708_86420958_86422415_86423251_86424292_86424404_86426742_86426848_86430590_86430696_86434797_86434906_86439562_86439664_86442782_86442946_86446727
transcript_77613.nic	chr6	+	857	7	NIC	ENSMUSG00000071337.12	novel	823	8	NA	NA	7	-56	combination_of_known_junctions	FALSE	canonical	3	50	junction_6	55.5230182496913	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTGTGTATCCTTCGA	9688	False	NA	NA	False	AGTAAA	-2	NA	86381207	86400775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86396082_86396116_86397305_86397394_86400587
transcript_77615.known	chr6	+	797	6	FSM	ENSMUSG00000071337.12	ENSMUST00000156762.8	797	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	74.1932611495141	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTGGGTGTATATTCAT	9785	False	NA	NA	False	NA	NA	NA	86381304	86400845	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86397305_86397394_86400587
transcript_77616.nnic	chr6	+	729	3	NNC	ENSMUSG00000046679.17	novel	505	2	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_2	0.5	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCATTTCTCGGGTCTCA	1441	False	NA	NA	False	ATTAAA	-1	NA	86415343	86416470	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_86415470_86415591_86415830_86416105
transcript_77617.nnic	chr6	+	1011	2	NNC	ENSMUSG00000046679.17	novel	2534	10	NA	NA	-12	6	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	0	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTCGGGTCTCAAATTAC	1441	False	NA	NA	False	ATTAAA	-7	NA	86415343	86416476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_86415470_86415591
transcript_77619.known	chr6	+	935	1	FSM	ENSMUSG00000071337.12	ENSMUST00000203206.2	935	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGCGACTAGTGGTTGAC	9697	False	NA	NA	False	ATTAAA	-15	NA	86381216	86382151	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_86381200_86382200
transcript_77620.known	chr6	+	3856	11	FSM	ENSMUSG00000071337.12	ENSMUST00000134142.8	3856	11	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_4	43.462742665414	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCAAACTTGTGCAAAGTC	9766	False	NA	NA	False	AATATA	-22	NA	86381285	86407754	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86397394_86400587_86401403_86401943_86402053_86402431_86402528_86402642_86402728_86403548_86403673_86404654_86404801_86407222
transcript_77621.known	chr6	+	505	2	FSM	ENSMUSG00000046679.17	ENSMUST00000143430.2	505	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCATTTCTCGGGTCTCA	1787	False	NA	NA	False	ATTAAA	-1	NA	86415689	86416470	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_86415830_86416105
transcript_77622.known	chr6	+	422	2	FSM	ENSMUSG00000071337.12	ENSMUST00000154983.2	422	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTTCTGAAAGTGTCCG	9744	False	NA	NA	False	AGTAAA	-17	NA	86381263	86384097	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_86381505_86383916
transcript_77623.nnic	chr6	-	915	2	NIC	ENSMUSG00000101655.2	novel	775	2	NA	NA	-158	0	combination_of_known_splicesites	FALSE	canonical	2	10	junction_1	0	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGTGAAATTTTTTTTTA	6838	False	NA	NA	False	AATAAA	-19	NA	86465367	86460357	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_86460682_86464776
transcript_77624.known	chr6	-	527	2	FSM	ENSMUSG00000101655.2	ENSMUST00000188135.2	527	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGTGAAATTTTTTTTTA	7019	False	NA	NA	False	AATAAA	-19	NA	86465186	86460357	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_86460682_86464983
transcript_77625.known	chr6	-	775	2	FSM	ENSMUSG00000101655.2	ENSMUST00000189386.2	775	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGTGAAATTTTTTTTTA	6996	False	NA	NA	False	AATAAA	-19	NA	86465209	86460357	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_86460700_86464776
transcript_77626.known	chr6	-	490	2	FSM	ENSMUSG00000107876.2	ENSMUST00000203987.2	490	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCTGGACATTTAATCCC	1314	False	NA	NA	False	ATTAAA	-18	NA	86470891	86470197	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_86470577_86470780
transcript_77628.known	chr6	-	429	2	FSM	ENSMUSG00000107689.2	ENSMUST00000204288.2	429	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGACTGGCCTTAACACC	4539	False	NA	NA	False	NA	NA	NA	86493255	86490872	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_86491051_86493004
transcript_7763.known	chr10	-	1880	5	FSM	ENSMUSG00000001665.12	ENSMUST00000001715.10	1880	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	2.34520787991171	191	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTTGCTTCTGGATCCT	NA	False	NA	5	True	AATAAA	-23	NA	75617248	75609948	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_75610845_75611704_75611882_75612577_75612729_75613934_75614023_75616680
transcript_77650.nnic	chr6	+	610	5	NNC	ENSMUSG00000097048.8	novel	713	6	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	46.0129057982649	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGTATTTTTAAATTTA	NA	False	NA	9	True	NA	NA	NA	86503212	86541431	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_86503344_86504872_86504957_86509174_86509290_86540413_86540520_86541257
transcript_77656.nnic	chr6	+	631	5	NNC	ENSMUSG00000097048.8	novel	2099	4	NA	NA	-140	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	47.2493386197098	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGTATTTTTAAATTTA	NA	False	NA	9	True	NA	NA	NA	86503651	86541431	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_86503804_86504872_86504957_86509174_86509290_86540413_86540520_86541257
transcript_77658.nnic	chr6	+	829	5	NNC	ENSMUSG00000097048.8	novel	594	5	NA	NA	-197	0	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_2	37.6231311828242	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGTATTTTTAAATTTA	NA	False	NA	9	True	NA	NA	NA	86504103	86541431	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_86504416_86504872_86504957_86509136_86509290_86540413_86540520_86541257
transcript_77659.known	chr6	+	594	5	FSM	ENSMUSG00000097048.8	ENSMUST00000204047.3	594	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	30.036436206714	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGTATTTTTAAATTTA	NA	False	NA	9	True	NA	NA	NA	86504300	86541431	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_86504416_86504872_86504957_86509174_86509290_86540413_86540520_86541257
transcript_77665.known	chr6	+	609	5	FSM	ENSMUSG00000097048.8	ENSMUST00000181928.4	609	5	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	43.1422067122209	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTGTATTTTTAAATTT	NA	False	NA	8	True	NA	NA	NA	86504382	86541430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_86504514_86504872_86504957_86509174_86509290_86540413_86540520_86541257
transcript_77672.nnic	chr6	+	835	4	NIC	ENSMUSG00000097048.8	novel	594	5	NA	NA	153	0	combination_of_known_splicesites	FALSE	canonical	3	26	junction_2	40.4337592722825	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGTATTTTTAAATTTA	NA	False	NA	9	True	NA	NA	NA	86503944	86541431	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_86504416_86504872_86504957_86540413_86540520_86541257
transcript_77677.known	chr6	-	1830	1	FSM	ENSMUSG00000051695.7	ENSMUST00000053015.7	1830	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2594	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCGTATTTGAAAGCTGGG	NA	False	NA	-32	True	ATTAAA	-22	NA	86503303	86501473	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_86501500_86503300
transcript_77678.known	chr6	+	2099	4	FSM	ENSMUSG00000097048.8	ENSMUST00000180896.8	2099	4	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	16.5126214353344	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGTATTTTTAAATTTA	NA	False	NA	9	True	NA	NA	NA	86503252	86541431	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_86504957_86509174_86509290_86540413_86540520_86541257
transcript_77679.known	chr6	+	1547	1	FSM	ENSMUSG00000033508.9	ENSMUST00000043400.9	1547	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATGTGCTCGATAGTTG	NA	False	NA	NA	False	AATAAA	-22	NA	86605145	86606692	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_86605100_86606700
transcript_7768.known	chr10	-	649	3	FSM	ENSMUSG00000001666.9	ENSMUST00000001716.8	649	3	0	0	0	0	multi-exon	FALSE	canonical	3	462	junction_2	12	4890	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATGACTTCTTTGCTTC	NA	False	NA	-7	True	AATAAA	-18	NA	75609248	75607066	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_75607341_75608571_75608748_75609049
transcript_77680.known	chr6	-	822	6	FSM	ENSMUSG00000001158.14	ENSMUST00000131674.2	822	6	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_5	727.529518301491	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTATTTATGACACCCAG	7677	False	NA	31	True	TATAAA	-9	NA	86661473	86652386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_86652563_86653203_86653269_86657888_86657969_86658572_86658686_86659837_86659959_86661206
transcript_77683.known	chr6	-	885	6	FSM	ENSMUSG00000001158.14	ENSMUST00000001186.11	885	6	0	0	0	0	multi-exon	FALSE	canonical	3	1763	junction_5	100.541732628794	4668	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATAGACTTGTTTTGTTT	7646	False	NA	1	True	ATTAAA	-29	NA	86661504	86652132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_86652563_86653203_86653269_86657888_86657969_86658572_86658686_86659837_86659959_86661428
transcript_77684.known	chr6	-	2949	14	FSM	ENSMUSG00000001157.14	ENSMUST00000001185.14	2949	14	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_7	38.1766371135774	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTCCTGTTTAAAGTGA	NA	False	NA	-18	True	AATAAA	-20	NA	86710365	86668749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_86670034_86674430_86674519_86677493_86677640_86681480_86681557_86684384_86684455_86687496_86687635_86688570_86688662_86691156_86691242_86694367_86694434_86694973_86695087_86698322_86698421_86699550_86699648_86703054_86703179_86709892
transcript_7769.known	chr10	-	574	2	FSM	ENSMUSG00000001666.9	ENSMUST00000172820.2	574	2	0	0	0	0	multi-exon	FALSE	canonical	3	486	junction_1	0	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGACTTCTTTGCTTCTGT	NA	False	NA	-4	True	AATAAA	-21	NA	75608868	75607063	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_75607341_75608571
transcript_77692.known	chr6	-	2002	13	FSM	ENSMUSG00000029994.18	ENSMUST00000001187.15	2002	13	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_5	17.8737858950537	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTATTCTTTCTCTGAT	4606	False	NA	-2	True	ATTAAA	-18	NA	86770566	86713822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_86714806_86718817_86718941_86720099_86720159_86721606_86721703_86725868_86725963_86728044_86728102_86729134_86729215_86730784_86730876_86731834_86731949_86734800_86734896_86737655_86737744_86742743_86742790_86770490
transcript_7770.known	chr10	-	1037	5	FSM	ENSMUSG00000001663.11	ENSMUST00000001713.10	1037	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	2.87228132326901	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTCCGTGTTGTTTCTTT	9576	False	NA	NA	False	AATAAA	-24	NA	75634418	75619646	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_75620068_75622628_75622806_75629910_75630062_75632876_75632965_75634218
transcript_77704.nic	chr6	-	848	7	ISM	ENSMUSG00000029994.18	ENSMUST00000001187.15	2002	13	10	15044	10	-4414	5prime_fragment	FALSE	canonical	3	152	junction_6	16.4054530229704	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGTGTTTTAGATGTT	4616	False	NA	NA	False	NA	NA	NA	86770556	86728866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_86729215_86730784_86730876_86731834_86731949_86734800_86734896_86737655_86737744_86742743_86742790_86770490
transcript_77707.known	chr6	-	1042	1	FSM	ENSMUSG00000100164.2	ENSMUST00000185414.2	1042	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGTTATTTTTCCACCAGC	NA	False	NA	NA	False	AATACA	-24	NA	86826422	86825380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_86825400_86826400
transcript_7771.nnic	chr10	-	1140	6	NNC	ENSMUSG00000033318.8	novel	1370	5	NA	NA	-830	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	18.5752523536021	156	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCTTTTTTTTCTTTTTT	NA	False	NA	-4	True	AATAAA	-21	NA	75671545	75667678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_75667929_75668228_75668403_75668494_75668646_75669485_75669574_75670008_75670237_75671296
transcript_77717.nnic	chr6	+	1211	9	NNC	ENSMUSG00000029993.17	novel	1195	9	NA	NA	-38	0	at_least_one_novel_splicesite	FALSE	canonical	3	69	junction_1	921.93755719951	828	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGCTTCCTCTCACGAA	NA	False	NA	25	True	AATAAA	-31	NA	86986179	87005443	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_86986353_86986731_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
transcript_77729.known	chr6	+	1195	9	FSM	ENSMUSG00000029993.17	ENSMUST00000120240.8	1195	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1184.03386248029	1361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGCTTCCTCTCACGAA	NA	False	NA	25	True	AATAAA	-31	NA	86986217	87005443	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_86986372_86986731_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997825_87000109_87000171_87002467_87002643_87005276
transcript_77730.known	chr6	+	950	8	FSM	ENSMUSG00000029993.17	ENSMUST00000117583.8	950	8	0	0	0	0	multi-exon	FALSE	canonical	3	2373	junction_7	253.923417669218	9251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTTGCTTCCTCTCACG	NA	False	NA	23	True	AATAAA	-29	NA	86986817	87005441	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
transcript_77731.known	chr6	+	371	3	FSM	ENSMUSG00000029993.17	ENSMUST00000203512.3	371	3	0	0	0	0	multi-exon	FALSE	canonical	3	2768	junction_1	171	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGGCTTTTACCTGGAAG	NA	False	NA	NA	False	NA	NA	NA	86986817	86992693	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_86986942_86989888_86989990_86992547
transcript_77732.known	chr6	+	777	7	FSM	ENSMUSG00000029993.17	ENSMUST00000144776.7	777	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1499.83763010089	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTAGGTATTAGCATCCTC	NA	False	NA	NA	False	ATTAAA	-22	NA	86986870	87000168	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_86986942_86989888_86989990_86992547_86992684_86993157_86993377_86996346_86996414_86997700_86997825_87000109
transcript_77733.known	chr6	+	6238	19	FSM	ENSMUSG00000029992.15	ENSMUST00000113658.8	6238	19	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_15	18.2452429112053	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTGACTTTTTCTTTT	9945	False	NA	14	True	AATAAA	-15	NA	87019827	87069179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_87019988_87027902_87028011_87030732_87030841_87031582_87031709_87033125_87033185_87034611_87034747_87036361_87036424_87037502_87037583_87040786_87040893_87043605_87043770_87044665_87044762_87050363_87050462_87053238_87053360_87054064_87054223_87059454_87059570_87062233_87062362_87063285_87063454_87064298_87064461_87065095
transcript_77735.known	chr6	+	1255	5	FSM	ENSMUSG00000029992.15	ENSMUST00000113655.8	1255	5	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_3	52.8506149443883	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTCTCAGGATTATATTT	9949	False	NA	NA	False	AATAAA	-14	NA	87019831	87032406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_87019988_87027902_87028011_87030183_87030243_87030732_87030841_87031582
transcript_77737.known	chr6	+	1200	4	FSM	ENSMUSG00000029992.15	ENSMUST00000113657.8	1200	4	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_2	14.3836326735943	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTCTCAGGATTATATTT	9945	False	NA	NA	False	AATAAA	-14	NA	87019827	87032406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_87019988_87027902_87028011_87030732_87030841_87031582
transcript_77739.nic	chr6	+	899	2	ISM	ENSMUSG00000029992.15	ENSMUST00000150410.2	473	3	-20	2316	-16	-2316	5prime_fragment	FALSE	canonical	3	121	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAACCAAAA	9929	False	NA	NA	False	NA	NA	NA	87019811	87028625	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_87019988_87027902
transcript_7774.nnic	chr10	-	715	4	NNC	ENSMUSG00000033318.8	novel	1370	5	NA	NA	-721	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	22.9927524813074	34	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCTTTTTTTTCTTTTTT	NA	False	NA	-4	True	AATAAA	-21	NA	75671436	75667678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_75667929_75668228_75668403_75668494_75668646_75671296
transcript_77740.known	chr6	+	2809	1	FSM	ENSMUSG00000029992.15	ENSMUST00000204872.2	2809	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9949	False	NA	NA	False	NA	NA	NA	87019831	87022640	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_87019800_87022600
transcript_77743.nic	chr6	-	2011	10	NIC	ENSMUSG00000030051.11	novel	1889	11	NA	NA	-23	0	intron_retention	FALSE	canonical	3	41	junction_3	13.2030673577893	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGATCTTCTGCCCTGA	NA	False	NA	-7	True	AATAAA	-20	NA	87649198	87606725	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_87607158_87613911_87613959_87618871_87618998_87622995_87623334_87630689_87630875_87635414_87635548_87635822_87635971_87640666_87640840_87645397_87645470_87648841
transcript_77744.known	chr6	-	3132	10	FSM	ENSMUSG00000030051.11	ENSMUST00000065997.5	3132	10	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_9	19.726525352153	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGTGGCTTATTTGCAA	NA	False	NA	NA	False	AATAAA	-18	NA	87649129	87605405	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_87607158_87613911_87613959_87618871_87618998_87622995_87623334_87630689_87630875_87635414_87635548_87635822_87635971_87640666_87640840_87645397_87645470_87648971
transcript_77749.nic	chr6	-	1927	8	ISM	ENSMUSG00000089997.3	ENSMUST00000238521.2	3678	16	4	30980	4	-30980	5prime_fragment	TRUE	canonical	1	2	junction_1	7.65319727770221	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTCTTCTTATTTAGA	NA	False	NA	NA	False	ATTAAA	-39	NA	87699779	87683554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_87684377_87689127_87689250_87690283_87690357_87691104_87691249_87694858_87695064_87695769_87695958_87698819_87699089_87699675
transcript_7775.nnic	chr10	-	764	4	NIC	ENSMUSG00000033318.8	novel	1370	5	NA	NA	21	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_3	22.0957512255687	42	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCTTTTTTTTCTTTTTT	NA	False	NA	-4	True	AATAAA	-21	NA	75673237	75667678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_-_75667929_75668228_75668403_75668494_75668646_75673048
transcript_77750.nnic	chr6	-	1269	7	NNC	ENSMUSG00000030051.11	novel	3588	6	NA	NA	-23	2	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	23.0072452356499	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGTGTCTCTTATTTGA	NA	False	NA	NA	False	CATAAA	-19	NA	87649198	87628070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_87628272_87630689_87630875_87635414_87635548_87635822_87635971_87640666_87640840_87645397_87645470_87648841
transcript_77756.nic	chr6	-	1226	7	ISM	ENSMUSG00000089997.3	ENSMUST00000238521.2	3678	16	4	36432	4	-36432	5prime_fragment	FALSE	canonical	3	8	junction_6	5.95585612840188	117	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTTGTCCATCGACCCA	NA	False	NA	NA	False	ATTAAA	-17	NA	87699779	87689006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_87689250_87690283_87690357_87691104_87691249_87694858_87695064_87695769_87695958_87698819_87699089_87699675
transcript_77760.known	chr6	-	3588	6	FSM	ENSMUSG00000030051.11	ENSMUST00000203776.2	3588	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	26.5028300375639	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTTTGTGTCTCTTATTT	NA	False	NA	NA	False	CATAAA	-17	NA	87649111	87628072	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_87630875_87635414_87635538_87635822_87635971_87640666_87640840_87645397_87645470_87648841
transcript_77764.known	chr6	-	1889	11	FSM	ENSMUSG00000030051.11	ENSMUST00000032130.8	1889	11	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	20.4511613362176	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACCTTTGATCTTCTGC	NA	False	NA	-12	True	AATAAA	-15	NA	87649175	87606730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_87606904_87606997_87607158_87613911_87613959_87618871_87618998_87622995_87623334_87630689_87630875_87635414_87635548_87635822_87635971_87640666_87640840_87645397_87645470_87648841
transcript_77766.known	chr6	-	713	3	FSM	ENSMUSG00000108079.2	ENSMUST00000205253.2	713	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACCAATGGCAATTTAAC	NA	False	NA	NA	False	NA	NA	NA	87708130	87706945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_87707210_87707324_87707593_87707949
transcript_77774.nnic	chr6	-	1918	3	Genic_Genomic	ENSMUSG00000068262.5_ENSMUSG00000068689.9	novel	1209	1	NA	NA	-579	114	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3375	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAAGCAAGCTGGGGTGGG	NA	False	NA	NA	False	NA	NA	NA	87926438	87741863	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr6_-_87743233_87925370_87925860_87926378
transcript_77775.nnic	chr6	-	1987	3	Genic_Genomic	ENSMUSG00000068262.5_ENSMUSG00000068689.9	novel	1209	1	NA	NA	-579	111	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3373	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGCAAGCAAGCTGGGGT	NA	False	NA	NA	False	NA	NA	NA	87926438	87741866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr6_-_87743233_87925298_87925860_87926378
transcript_77777.nnic	chr6	-	1939	3	Genic_Genomic	ENSMUSG00000068262.5_ENSMUSG00000068689.9	novel	1209	1	NA	NA	-579	82	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3316	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAGAAAAAA	NA	False	NA	NA	False	AATAAA	-37	NA	87926438	87741895	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr6_-_87743233_87925317_87925860_87926378
transcript_77779.nnic	chr6	-	1794	3	Genic_Genomic	ENSMUSG00000068262.5_ENSMUSG00000068689.9	novel	1209	1	NA	NA	-579	77	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1109	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-32	NA	87926438	87741900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr6_-_87743191_87925415_87925860_87926378
transcript_77784.known	chr6	-	1209	1	FSM	ENSMUSG00000068262.5	ENSMUST00000089501.5	1209	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	240	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTCCAGGACCACTTTGT	2100	False	NA	NA	False	AAGAAA	-28	NA	87743186	87741977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_87742000_87743200
transcript_77787.known	chr6	-	4605	3	FSM	ENSMUSG00000030055.17	ENSMUST00000078647.11	4605	3	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	1	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGGTCTATCACCTCTGG	2694	False	NA	7	True	ATTAAA	-27	NA	87788761	87765834	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_87769823_87771595_87771780_87788328
transcript_77788.known	chr6	-	5837	11	FSM	ENSMUSG00000030056.9	ENSMUST00000089497.7	5837	11	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_5	30.4276190327143	584	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCAGATTTGTCAAGGTG	NA	False	NA	NA	False	AATACA	-17	NA	87815780	87791250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_87796186_87796538_87796626_87798489_87798612_87799321_87799445_87802352_87802471_87804565_87804679_87810623_87810667_87811409_87811476_87811924_87811977_87812709_87812733_87815625
transcript_77800.known	chr6	-	2175	5	FSM	ENSMUSG00000030057.16	ENSMUST00000204653.3	2175	5	0	0	0	0	multi-exon	FALSE	canonical	3	7593	junction_2	1716.19673988736	9747	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAACAAAAA	NA	False	NA	NA	False	AGTAAA	-12	NA	87828088	87819596	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
transcript_77801.known	chr6	-	1614	5	FSM	ENSMUSG00000030057.16	ENSMUST00000204890.3	1614	5	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_3	4411.10218652889	4241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATGACAGTTTGGACTT	NA	False	NA	-9	True	ATTAAA	-21	NA	87828012	87820063	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822655_87822776_87827885
transcript_77802.known	chr6	-	952	6	FSM	ENSMUSG00000030057.16	ENSMUST00000113617.3	952	6	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_4	4719.63282470151	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAATTTCTGCATTTAACTA	NA	False	NA	-47	True	NA	NA	NA	87828042	87820868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87825996_87826092_87827885
transcript_77803.known	chr6	+	1087	1	FSM	ENSMUSG00000107798.2	ENSMUST00000204964.2	1087	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	87828190	87829277	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_87828200_87829300
transcript_77804.known	chr6	+	4140	24	FSM	ENSMUSG00000030058.18	ENSMUST00000113607.10	4140	24	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	198.307183759023	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTCAGCCTCCTTTTG	NA	False	NA	NA	False	AATAAA	-15	NA	87864795	87890577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_87865055_87866052_87866106_87866638_87866720_87866937_87867010_87867171_87867252_87868930_87869007_87869187_87869281_87869614_87869702_87870777_87870936_87871022_87871157_87872675_87872744_87872908_87873098_87874934_87875031_87879179_87879424_87880466_87880543_87881069_87881174_87881797_87881924_87882180_87882250_87884354_87884498_87884791_87884964_87885517_87885616_87886645_87886785_87887021_87887121_87889153
transcript_77809.known	chr6	+	921	5	FSM	ENSMUSG00000030058.18	ENSMUST00000049966.6	921	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	373.284408996679	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTGCCTCTTACCCAGTT	NA	False	NA	NA	False	AAAACA	-14	NA	87864909	87867741	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_87865055_87866052_87866106_87866638_87866720_87866937_87867010_87867171
transcript_77815.known	chr6	+	1464	7	FSM	ENSMUSG00000030060.15	ENSMUST00000032141.14	1464	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	428.702078630629	4307	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGGCTCTCACCCAGTA	2964	False	NA	44	True	AATAAA	-30	NA	87890916	87913611	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_87890994_87891472_87891678_87894820_87894965_87898507_87898634_87902613_87902793_87910223_87910417_87913071
transcript_77816.nic	chr6	-	2239	7	NIC	ENSMUSG00000079477.10	novel	1657	8	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	112	junction_6	799.58419749823	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTCTGTCTTTTTCT	NA	False	NA	NA	False	AATAAA	-22	NA	88022245	87976087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_87992613_87992701_88022054
transcript_77822.known	chr6	-	2159	6	FSM	ENSMUSG00000079477.10	ENSMUST00000113600.10	2159	6	0	0	0	0	multi-exon	FALSE	canonical	3	1571	junction_1	157.281403859452	2058	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTCTGTCTTTTTCT	NA	False	NA	NA	False	AATAAA	-22	NA	88022252	87976087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_88022054
transcript_77824.known	chr6	+	3633	10	FSM	ENSMUSG00000030062.8	ENSMUST00000032143.8	3633	10	0	0	0	0	multi-exon	FALSE	canonical	3	2268	junction_5	110.706262438987	973	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATGTATGCTTGTTAGA	537	False	NA	NA	False	AATAAA	-15	NA	88061463	88082286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_88061777_88065331_88065397_88066970_88067278_88070767_88070978_88072504_88072698_88076255_88076356_88077610_88077750_88077843_88077964_88078956_88079203_88080346
transcript_77825.known	chr6	+	3571	6	FSM	ENSMUSG00000015053.15	ENSMUST00000015197.9	3571	6	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_4	9.31665175908169	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCTGTCGCCTGTTGAGT	NA	False	NA	12	True	AATAAA	-13	NA	88175315	88184012	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_88175864_88176498_88176772_88177200_88177843_88179400_88179547_88181564_88181691_88182176
transcript_77828.known	chr6	-	2679	7	FSM	ENSMUSG00000033216.10	ENSMUST00000165242.4	2679	7	0	0	0	0	multi-exon	TRUE	canonical	3	371	junction_3	47.1643108952333	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTGTGATCAAATGACTT	NA	False	NA	-8	True	ATTAAA	-16	NA	88423521	88234315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_88235374_88258530_88258688_88274558_88275219_88332464_88332630_88335527_88335625_88353185_88353394_88423187
transcript_77830.nic	chr6	-	1505	6	NIC	ENSMUSG00000033216.10	novel	2679	7	NA	NA	-22	3	combination_of_known_junctions	FALSE	canonical	3	78	junction_2	158.228189650264	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAGTGTGCCCATAGTCTG	NA	False	NA	-14	True	AATAAA	-15	NA	88423543	88234851	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_88235374_88258530_88258688_88332464_88332630_88335527_88335625_88353185_88353394_88423187
transcript_77836.nnic	chr6	-	1062	5	NNC	ENSMUSG00000033216.10	novel	2679	7	NA	NA	-22	-14467	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	202.243664919324	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCCAAGCCCCAGTATGAA	NA	False	NA	NA	False	AAAAAG	-3	NA	88423543	88289554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_88289791_88332464_88332630_88335527_88335625_88353185_88353394_88423187
transcript_77842.known	chr6	+	1675	11	FSM	ENSMUSG00000030079.16	ENSMUST00000032165.16	1675	11	0	0	0	0	multi-exon	FALSE	canonical	3	1160	junction_1	83.5499850388975	5315	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGGTTTTTATATTTTAC	NA	False	NA	31	True	AATAAA	-31	NA	88442390	88474554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_88442651_88444547_88444635_88450058_88450192_88456108_88456261_88459099_88459190_88459944_88460095_88461389_88461454_88462694_88462894_88468497_88468601_88473389_88473482_88474209
transcript_77843.known	chr6	-	3172	12	FSM	ENSMUSG00000030082.15	ENSMUST00000032168.7	3172	12	0	0	0	0	multi-exon	FALSE	canonical	3	923	junction_2	46.8136802778528	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGCAGAAAGCTTGTTGT	9095	False	NA	5	True	AATAAA	-39	NA	88495887	88480560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
transcript_77845.known	chr6	-	935	5	FSM	ENSMUSG00000030082.15	ENSMUST00000130918.8	935	5	0	0	0	0	multi-exon	FALSE	canonical	3	957	junction_4	50.4548065103811	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTAACTCGGTGGGAAAG	9227	False	NA	NA	False	NA	NA	NA	88495755	88490792	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
transcript_77847.known	chr6	+	995	1	FSM	ENSMUSG00000107698.2	ENSMUST00000203376.2	995	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTATTTCTTTGAGATTTA	NA	False	NA	NA	False	AATAAA	-21	NA	88495994	88496989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_88496000_88497000
transcript_77848.known	chr6	-	1572	2	FSM	ENSMUSG00000033182.13	ENSMUST00000038804.4	1572	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGTTTTGTGTTGTTATT	NA	False	NA	NA	False	TTTAAA	-14	NA	88604427	88594417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_88595941_88604378
transcript_77849.known	chr6	+	3676	8	FSM	ENSMUSG00000033174.18	ENSMUST00000113585.9	3676	8	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_6	2.55550625999976	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTGTGTCTGCGTGTCTG	NA	False	NA	5	True	AATAAA	-20	NA	88701393	88805342	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_88701554_88702682_88702828_88741577_88741685_88784992_88785130_88786317_88786429_88795555_88795646_88800172_88800389_88802632
transcript_77851.known	chr6	+	3867	8	FSM	ENSMUSG00000033174.18	ENSMUST00000089449.5	3867	8	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	4.18939379960434	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTGTGTCTGCGTGTCTG	NA	False	NA	5	True	AATAAA	-20	NA	88701809	88805342	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_88702161_88702682_88702828_88741577_88741685_88784992_88785130_88786317_88786429_88795555_88795646_88800172_88800389_88802632
transcript_77855.known	chr6	+	1312	4	FSM	ENSMUSG00000033174.18	ENSMUST00000150180.4	1312	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	6.34209919681348	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGAGGACTCTGTGATGT	NA	False	NA	NA	False	AATAAA	-16	NA	88701577	88743690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_88702161_88702682_88702828_88741577_88741685_88743213
transcript_77860.known	chr6	-	1845	12	FSM	ENSMUSG00000030083.12	ENSMUST00000032169.8	1845	12	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_10	111.135015794021	987	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGCCTGTTGTTGGGGT	6964	False	NA	-4	True	AATAAA	-21	NA	88818882	88812895	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_88813435_88813506_88813708_88815099_88815268_88815361_88815461_88815619_88815739_88815826_88815944_88816166_88816213_88816312_88816473_88816608_88816754_88817691_88817748_88817819_88817883_88818750
transcript_77861.known	chr6	-	1774	12	FSM	ENSMUSG00000030083.12	ENSMUST00000203137.3	1774	12	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	157.288543608278	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGGGGACCTGAGCCTG	6970	False	NA	-14	True	AATAAA	-11	NA	88818876	88812905	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_88813435_88813506_88813708_88815099_88815248_88815361_88815461_88815619_88815739_88815826_88815944_88816166_88816213_88816312_88816473_88816608_88816754_88817691_88817748_88817854_88817883_88818750
transcript_77862.known	chr6	-	522	4	FSM	ENSMUSG00000030083.12	ENSMUST00000203514.3	522	4	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_1	20.2868320729373	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCATCTGAGCTGCGGG	9275	False	NA	NA	False	NA	NA	NA	88816571	88815638	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_88815739_88815826_88815944_88816166_88816213_88816312
transcript_77863.known	chr6	-	3371	16	FSM	ENSMUSG00000002870.9	ENSMUST00000058011.8	3371	16	0	0	0	0	multi-exon	FALSE	canonical	1	1040	junction_8	575.928791894739	742	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTGGTTCTGGTTTAA	NA	False	NA	-3	True	AATAAA	-16	NA	88875762	88860455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_88861093_88861357_88861514_88861663_88861847_88862825_88863078_88863942_88864056_88864482_88864610_88864701_88864953_88865153_88865248_88865995_88866188_88866769_88866905_88868654_88868863_88868957_88869178_88869926_88870188_88870319_88870496_88874268_88874499_88875626
transcript_77868.known	chr6	+	1738	12	FSM	ENSMUSG00000002871.15	ENSMUST00000204765.3	1738	12	0	0	0	0	multi-exon	TRUE	canonical	3	57	junction_1	17.59319928714	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGTGTGAGCTGATGCCT	NA	False	NA	12	True	AATAAA	-14	NA	88879314	88889213	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_88879513_88882930_88883061_88884922_88885055_88885165_88885299_88886271_88886359_88886489_88886563_88886662_88886743_88887132_88887244_88887322_88887384_88887529_88887633_88887778_88887860_88888664
transcript_77880.known	chr6	-	652	2	FSM	ENSMUSG00000090013.2	ENSMUST00000159767.2	652	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATTTTTTCAACTTTATG	NA	False	NA	NA	False	NA	NA	NA	89163007	89161653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_89162143_89162844
transcript_77883.known	chr6	-	1121	8	FSM	ENSMUSG00000030086.17	ENSMUST00000032172.14	1121	8	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_4	25.4486277245203	1300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCACCCAGTCACTTCTG	NA	False	NA	-5	True	AATAAA	-32	NA	89572634	89360132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_89360331_89361585_89361722_89396729_89396801_89444371_89444456_89544568_89544714_89546324_89546395_89551349_89551573_89572440
transcript_77884.known	chr6	-	1042	7	FSM	ENSMUSG00000030086.17	ENSMUST00000113550.6	1042	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	87.7648373021147	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAGTCACTTCTGTTGAC	NA	False	NA	0	True	AATAAA	-37	NA	89572634	89360127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_89360331_89361585_89361722_89396729_89396801_89544568_89544714_89546324_89546395_89551349_89551573_89572440
transcript_77889.nnic	chr6	-	2843	4	NNC	ENSMUSG00000092247.3	novel	399	4	NA	NA	-28	10395	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0.471404520791032	12	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTATGAACAGAGTGGAGCA	NA	False	NA	NA	False	NA	NA	NA	90209827	90198314	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_90200748_90201237_90201354_90202364_90202500_90209668
transcript_779.known	chr1	+	660	8	FSM	ENSMUSG00000025903.15	ENSMUST00000131119.2	660	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	286.862051750826	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCTATGAAGGCATGAT	NA	False	NA	NA	False	GATAAA	-20	NA	4878459	4911316	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_4878589_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178
transcript_77900.known	chr6	-	849	4	FSM	ENSMUSG00000048794.15	ENSMUST00000134224.8	849	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0.471404520791032	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGATCATATTCACGTCA	NA	False	NA	NA	False	NA	NA	NA	90405779	90397915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_90398048_90398190_90398383_90404419_90404526_90405360
transcript_77901.known	chr6	-	289	3	FSM	ENSMUSG00000048794.15	ENSMUST00000135757.3	289	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	1.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTGCCTTTCCCGTGAAC	NA	False	NA	NA	False	AATAAA	-14	NA	90405377	90403465	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_90403632_90404419_90404526_90405360
transcript_77903.known	chr6	+	3052	23	FSM	ENSMUSG00000030088.16	ENSMUST00000032175.11	3052	23	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	30.2788691558217	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGTCACTGCTCTG	NA	False	NA	13	True	AATAAA	-23	NA	90527786	90576151	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_90527880_90534183_90534334_90536223_90536459_90536807_90536974_90539600_90539703_90540346_90540437_90541327_90541466_90543620_90543747_90546454_90546547_90546774_90546923_90547765_90547886_90548848_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
transcript_77905.known	chr6	+	4175	23	FSM	ENSMUSG00000030088.16	ENSMUST00000130418.8	4175	23	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	39.2549675753126	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTTTTTGTCTCTGTGTT	NA	False	NA	NA	False	TTTAAA	-17	NA	90527770	90577185	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_90527953_90534183_90534334_90536223_90536459_90536807_90536974_90539600_90539703_90540346_90540437_90541327_90541466_90543620_90543747_90546454_90546547_90546774_90546923_90547765_90547886_90548848_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
transcript_77906.nic	chr6	+	1735	12	ISM	ENSMUSG00000030088.16	ENSMUST00000204796.3	3025	23	20876	-9	4018	0	3prime_fragment	FALSE	canonical	3	182	junction_2	18.1799999090818	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGTCACTGCTCTG	7895	False	NA	13	True	AATAAA	-23	NA	90548705	90576151	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
transcript_77907.nnic	chr6	+	1615	12	NNC	ENSMUSG00000030088.16	novel	3052	23	NA	NA	4037	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	63.5044086450332	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGTCACTGCTCTG	7914	False	NA	13	True	AATAAA	-23	NA	90548724	90576151	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_90548876_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
transcript_77911.nnic	chr6	+	676	2	NNC	ENSMUSG00000108111.2	novel	661	2	NA	NA	32340	7	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	0	215	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGTGTGTAATTATACAA	9294	False	NA	NA	False	AATACA	-18	NA	90495714	90496469	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_90495862_90495940
transcript_77912.known	chr6	+	661	2	FSM	ENSMUSG00000108111.2	ENSMUST00000203807.2	661	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTCTGTGGTGTGTAAT	749	False	NA	NA	False	AATACA	-11	NA	90463374	90496462	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_90463514_90495940
transcript_77913.known	chr6	+	2412	11	FSM	ENSMUSG00000030089.16	ENSMUST00000044019.16	2412	11	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	19.246038553427	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGGTGTCCTCCATCCTTC	9924	False	NA	NA	False	AATAAA	-17	NA	90581706	90623394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_90581991_90588860_90589164_90601793_90601902_90603361_90603434_90610592_90610738_90612231_90612379_90613838_90613984_90617865_90617946_90619192_90619328_90621066_90621216_90622550
transcript_77915.known	chr6	-	480	1	FSM	ENSMUSG00000058700.3	ENSMUST00000080061.3	480	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATGTACACAAAGAAATAA	NA	False	NA	NA	False	NA	NA	NA	90822442	90821962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_90822000_90822400
transcript_77916.known	chr6	+	2653	10	FSM	ENSMUSG00000034245.11	ENSMUST00000041736.11	2653	10	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_9	4.60541817245838	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGGCAGCTGCCCAAGAT	NA	False	NA	29	True	AATAAA	-31	NA	91133646	91151674	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_91133830_91134378_91134528_91136142_91136244_91142542_91142660_91143224_91143268_91144785_91144863_91145790_91145854_91146376_91146474_91149146_91149326_91150030
transcript_77918.nnic	chr6	+	535	3	NNC	ENSMUSG00000100680.2	novel	486	2	NA	NA	-41	1216	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCCTCAGCCCCTTCCAG	NA	False	NA	NA	False	NA	NA	NA	91417927	91419953	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_91418317_91419354_91419413_91419865
transcript_77919.known	chr6	+	486	2	FSM	ENSMUSG00000100680.2	ENSMUST00000186472.2	486	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGTCTACACTCATTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	91417968	91418737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_91418141_91418423
transcript_77926.known	chr6	-	1854	1	FSM	ENSMUSG00000034203.9	ENSMUST00000205802.2	1854	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGGAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91450431	91448577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_91448600_91450400
transcript_77927.known	chr6	-	3472	3	FSM	ENSMUSG00000034203.9	ENSMUST00000040835.9	3472	3	0	0	0	0	multi-exon	FALSE	canonical	3	1002	junction_1	28.5	3235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTATGCAGTACATGATCT	NA	False	NA	NA	False	NA	NA	NA	91450528	91439153	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_91442296_91444664_91444764_91450297
transcript_77928.known	chr6	+	2903	12	FSM	ENSMUSG00000030095.11	ENSMUST00000032183.6	2903	12	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_7	13.7209497779825	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTCGTTTGCTGTTGCA	9688	False	NA	NA	False	AATAAA	-30	NA	91450684	91465445	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_91450881_91454226_91454377_91455187_91455323_91455687_91455783_91456554_91456605_91456862_91456933_91457631_91457703_91458913_91459036_91459235_91459311_91459642_91459745_91462298_91462417_91463726
transcript_77931.known	chr6	-	3634	16	FSM	ENSMUSG00000030094.9	ENSMUST00000032182.5	3634	16	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_2	18.0017283120878	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTGGCTGCAAATTTATT	369	False	NA	0	True	AATAAA	-16	NA	91492870	91466286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_91467249_91468202_91468293_91469252_91469347_91469823_91469994_91470086_91470222_91473069_91473152_91475011_91475173_91476246_91477120_91477903_91477994_91480982_91481104_91481552_91481711_91482372_91482458_91483820_91483942_91485470_91485578_91487438_91487641_91492687
transcript_77934.nic	chr6	-	2083	9	ISM	ENSMUSG00000030094.9	ENSMUST00000150279.3	4347	13	-94	6850	-1	-6850	5prime_fragment	FALSE	canonical	3	87	junction_7	19.6273883896967	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACATACTTTTCTATTTAT	368	False	NA	NA	False	AATATA	-19	NA	91492871	91476104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_91477120_91477903_91477994_91480982_91481104_91481552_91481711_91482372_91482458_91483820_91483942_91485470_91485578_91487438_91487641_91492687
transcript_77945.known	chr6	+	618	4	FSM	ENSMUSG00000034192.6	ENSMUST00000206947.2	618	4	0	0	0	0	multi-exon	FALSE	canonical	3	1484	junction_1	387.955610290089	12065	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTACTTTTTTTTTTAATG	NA	False	NA	42	True	ATTAAA	-18	NA	91493029	91499602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_91493061_91494029_91494141_91496530_91496627_91499222
transcript_77947.known	chr6	+	6186	15	FSM	ENSMUSG00000030096.9	ENSMUST00000032185.9	6186	15	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_10	29.4144383538675	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTGGTGTGTTTCGGAGT	NA	False	NA	31	True	AATAAA	-25	NA	91661033	91736047	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_91661290_91675969_91676014_91700262_91700503_91701822_91701958_91702992_91703228_91712071_91712205_91716857_91716993_91717929_91718034_91718158_91718284_91721897_91722011_91725313_91725452_91726707_91726811_91727253_91727355_91729267_91729439_91731894
transcript_77956.known	chr6	+	1553	5	FSM	ENSMUSG00000030096.9	ENSMUST00000206835.2	1553	5	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_1	28.2167946443249	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATAATCTCCTTGTGTTAA	NA	False	NA	NA	False	AATAGA	-20	NA	91661075	91703912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_91661290_91675969_91676014_91700262_91700503_91701822_91701958_91702992
transcript_77967.known	chr6	+	1752	11	FSM	ENSMUSG00000034083.17	ENSMUST00000037783.7	1752	11	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_7	17.7876361554873	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGAGGAACTTGTTTCTT	NA	False	NA	12	True	TATAAA	-16	NA	91855033	91876824	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_91855168_91857237_91857343_91858227_91858329_91862328_91862388_91865050_91865232_91867774_91867871_91869836_91869980_91870386_91870482_91872194_91872328_91875127_91875281_91876272
transcript_77971.nic	chr6	+	956	9	ISM	ENSMUSG00000034083.17	ENSMUST00000037783.7	1752	11	-13	4601	-13	-51	5prime_fragment	FALSE	canonical	3	160	junction_7	19.3095669293747	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CATAAAGGAAAAGAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	91855020	91872223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_91855168_91857237_91857343_91858227_91858329_91862328_91862388_91865050_91865232_91867774_91867871_91869836_91869980_91870386_91870482_91872194
transcript_77975.known	chr6	+	3980	3	FSM	ENSMUSG00000034083.17	ENSMUST00000138868.8	3980	3	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_1	5	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91855033	91861968	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_91855168_91857237_91857343_91858227
transcript_77979.known	chr6	+	2294	7	FSM	ENSMUSG00000034037.15	ENSMUST00000146743.2	2294	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	1	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTTACTTGTAGTATAAA	NA	False	NA	NA	False	AATAAA	-20	NA	92044409	92052985	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_92044583_92044865_92045004_92045428_92045559_92046348_92046483_92048292_92048422_92051078_92051234_92051550
transcript_77987.known	chr6	-	5334	12	FSM	ENSMUSG00000014550.15	ENSMUST00000014694.11	5334	12	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_10	18.3307536376882	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTGTGTGCTTAAAACGT	NA	False	NA	1	True	ATTAAA	-24	NA	92191906	92163692	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_92167440_92168229_92168335_92170109_92170213_92170924_92171012_92175164_92175236_92176674_92176917_92178452_92178615_92178712_92178759_92179550_92179652_92184025_92184167_92188568_92188883_92191691
transcript_77990.known	chr6	-	1384	3	FSM	ENSMUSG00000005892.5	ENSMUST00000006046.5	1384	3	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	3.5	254	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTGCTTTGCTCTTCTG	NA	False	NA	-13	True	AATAAA	-15	NA	92221631	92219041	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_92220107_92220652_92220869_92221528
transcript_77992.nnic	chr6	+	870	5	NNC	ENSMUSG00000048636.8	novel	2239	5	NA	NA	-63	-4748	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	1.5	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGATTTTTTTTCCTTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	92793395	92815698	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_92793642_92804897_92805085_92808917_92809046_92811419_92811468_92815437
transcript_77997.known	chr6	+	995	3	FSM	ENSMUSG00000097462.8	ENSMUST00000181840.4	995	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACATGCCATATTTATCT	NA	False	NA	NA	False	NA	NA	NA	92917562	93088730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_92917791_93084047_93084141_93088056
transcript_78.known	ERCC-00163	+	527	1	FSM	ERCC-00163A	DQ668359	527	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	146	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	527	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00163_+_0_500
transcript_78009.known	chr6	+	1922	10	FSM	ENSMUSG00000045100.12	ENSMUST00000061118.11	1922	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	7.6610285226392	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGCCTCTCAGAAGCAG	NA	False	NA	NA	False	AATAAA	-36	NA	94477311	94581653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_94477439_94484494_94484652_94487732_94487843_94511124_94511230_94512701_94512750_94553314_94553360_94569392_94569463_94575360_94575426_94576159_94576234_94580532
transcript_78013.nic	chr6	+	1111	9	NIC	ENSMUSG00000045100.12	novel	1922	10	NA	NA	-44	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_5	12.2983738762488	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGCTTTTTATTAGCAT	NA	False	NA	NA	False	AATAAA	-32	NA	94477267	94580843	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_94477439_94484494_94484652_94487732_94487843_94511124_94511230_94512701_94512750_94569392_94569463_94575360_94575426_94576159_94576234_94580532
transcript_78015.nic	chr6	+	1921	9	NIC	ENSMUSG00000045100.12	novel	1922	10	NA	NA	-44	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_5	12.2983738762488	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGCCTCTCAGAAGCAG	NA	False	NA	NA	False	AATAAA	-36	NA	94477267	94581653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_94477439_94484494_94484652_94487732_94487843_94511124_94511230_94512701_94512750_94569392_94569463_94575360_94575426_94576159_94576234_94580532
transcript_78027.nic	chr6	+	859	5	ISM	ENSMUSG00000045100.12	ENSMUST00000061118.11	1922	10	-44	68636	-44	25179	5prime_fragment	FALSE	canonical	3	34	junction_4	5.93190525885234	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCCCAGAAGCTGTTGAG	NA	False	NA	NA	False	NA	NA	NA	94477267	94513017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_94477439_94484494_94484652_94487732_94487843_94511124_94511230_94512701
transcript_78028.nic	chr6	+	838	3	ISM	ENSMUSG00000045100.12	ENSMUST00000061118.11	1922	10	-44	93411	-44	404	5prime_fragment	FALSE	canonical	3	40	junction_2	2.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGGCCTTGAAATTGTG	NA	False	NA	NA	False	ATTAAA	-41	NA	94477267	94488242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_94477439_94484494_94484652_94487732
transcript_78029.known	chr6	+	4869	4	FSM	ENSMUSG00000030031.15	ENSMUST00000032107.10	4869	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	4.18993502999218	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACTAGTTAGTATTAACA	NA	False	NA	90	True	ATTAAA	-23	NA	95094720	95106771	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_95094956_95095503_95095715_95098719_95099829_95103457
transcript_78038.known	chr6	-	3367	11	FSM	ENSMUSG00000061838.8	ENSMUST00000204224.3	3367	11	0	0	0	0	multi-exon	FALSE	canonical	3	467	junction_5	91.8564096838103	1300	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTCAGTAGTGTGGGGTG	NA	False	NA	-7	True	ATTAAA	-17	NA	95695781	95449989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_95452146_95474577_95474699_95543364_95543508_95546552_95546715_95556119_95556217_95563920_95564011_95565918_95566072_95571640_95571732_95572634_95572735_95632438_95632581_95695669
transcript_78050.known	chr6	-	2190	6	FSM	ENSMUSG00000046500.9	ENSMUST00000089295.6	2190	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	2.56124969497314	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTTGTGATTATTTATTT	NA	False	NA	-28	True	AGTAAA	-26	NA	97037374	96808163	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_96809534_96820711_96820837_96840720_96840877_96991332_96991449_96996875_96997016_97037091
transcript_78052.known	chr6	-	4424	18	FSM	ENSMUSG00000035245.13	ENSMUST00000054344.11	4424	18	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_9	6.4238957016875	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTGAACATCTTCAGGAT	NA	False	NA	-6	True	AATAAA	-22	NA	97126143	97086984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_97089168_97089641_97089745_97090803_97090924_97092961_97093024_97095841_97095911_97096923_97097011_97097104_97097177_97097672_97097766_97102480_97102585_97108312_97108420_97111239_97111345_97112136_97112232_97119786_97119896_97120900_97121002_97122221_97122446_97124355_97124413_97124837_97125220_97125792
transcript_78056.known	chr6	-	2561	18	FSM	ENSMUSG00000030061.17	ENSMUST00000204056.2	2561	18	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_16	168.014169776465	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTTATAGTCAAGTCTC	NA	False	NA	-18	True	AGTAAA	-17	NA	97182520	97160778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182063_97182309_97182493
transcript_78057.known	chr6	-	2257	18	FSM	ENSMUSG00000030061.17	ENSMUST00000089287.7	2257	18	0	0	0	0	multi-exon	FALSE	canonical	3	461	junction_17	79.0590861340176	1001	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACTTAAAGTATATCAAT	NA	False	NA	-7	True	AATAAA	-24	NA	97182608	97160967	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182266_97182309_97182493
transcript_7808.known	chr10	-	544	3	FSM	ENSMUSG00000033307.8	ENSMUST00000038169.8	544	3	0	0	0	0	multi-exon	FALSE	canonical	3	12818	junction_1	2119	83240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGCCTCAGCTTCTGCT	NA	False	NA	-10	True	AATAAA	-18	NA	75696074	75695186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_75695378_75695520_75695694_75695894
transcript_78086.known	chr6	-	1293	2	FSM	ENSMUSG00000030061.17	ENSMUST00000203215.2	1293	2	0	0	0	0	multi-exon	FALSE	canonical	3	461	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAATACTGGGATCC	NA	False	NA	NA	False	TTTAAA	-3	NA	97182529	97181051	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_97182309_97182493
transcript_78088.known	chr6	-	2465	17	FSM	ENSMUSG00000030061.17	ENSMUST00000164744.8	2465	17	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_16	154.413292315623	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAATTGCAATTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	97182521	97160630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182493
transcript_78089.known	chr6	-	614	2	FSM	ENSMUSG00000030061.17	ENSMUST00000204391.2	614	2	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAATATTTGATTAGATAG	NA	False	NA	NA	False	AATAGA	-35	NA	97182526	97179974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_97180556_97182493
transcript_7809.known	chr10	-	600	2	FSM	ENSMUSG00000033307.8	ENSMUST00000218267.2	600	2	0	0	0	0	multi-exon	FALSE	canonical	3	12818	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTTGAGCCTCGCTCCA	NA	False	NA	-107	True	NA	NA	NA	75696026	75695283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_75695378_75695520
transcript_78090.known	chr6	+	1442	3	FSM	ENSMUSG00000035199.7	ENSMUST00000044681.7	1442	3	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_2	50	1101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGTCTATATGGCACAT	8448	False	NA	10	True	AATAAA	-21	NA	97187649	97210276	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_97187958_97206497_97206716_97209360
transcript_78094.known	chr6	+	1360	2	FSM	ENSMUSG00000035158.16	ENSMUST00000148233.2	1360	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAAAAAATCCTTCCAT	NA	False	NA	NA	False	NA	NA	NA	97784018	97919140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_97784249_97918010
transcript_78095.known	chr6	-	695	2	FSM	ENSMUSG00000030069.16	ENSMUST00000203738.2	695	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTTTTGTTGGTGTTTG	8817	False	NA	NA	False	AATACA	-20	NA	99703353	99699065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_99699596_99703188
transcript_78096.known	chr6	-	1450	3	FSM	ENSMUSG00000030069.16	ENSMUST00000101120.11	1450	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGCTGTCAACAGTTTTTAT	8817	False	NA	NA	False	NA	NA	NA	99703353	99688259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_99689419_99699469_99699596_99703188
transcript_7810.known	chr10	+	1316	7	FSM	ENSMUSG00000009092.6	ENSMUST00000217811.2	1316	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	5.48988969733353	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGACTCAATATGTTAGT	NA	False	NA	NA	False	NA	NA	NA	75729248	75731775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_75729352_75729455_75729519_75729603_75729678_75729800_75729895_75730265_75730462_75730872_75730964_75731080
transcript_78103.known	chr6	-	422	3	FSM	ENSMUSG00000107528.2	ENSMUST00000204298.2	422	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTGTTTTTGTTTGCT	NA	False	NA	NA	False	TTTAAA	-6	NA	99927892	99905208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_99905493_99927634_99927734_99927853
transcript_78108.nic	chr6	+	707	3	ISM	ENSMUSG00000101553.2	ENSMUST00000187986.2	507	4	-23	-3	-23	3	intron_retention	FALSE	canonical	1	1	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGACCTGCATGAATCCT	NA	False	NA	NA	False	ATTAAA	-20	NA	100504337	100510390	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_100504601_100506579_100506659_100510025
transcript_78110.known	chr6	-	1990	11	FSM	ENSMUSG00000035378.18	ENSMUST00000170667.8	1990	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	64.1530201939083	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAGGTGTAAATAATTAGA	NA	False	NA	-2	True	AATAAA	-18	NA	100648118	100550042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_100550750_100588696_100588818_100607843_100607968_100609199_100609254_100613928_100614084_100625124_100625253_100632219_100632333_100641387_100641549_100642266_100642390_100646660_100646726_100647879
transcript_78111.nnic	chr6	-	2015	11	NNC	ENSMUSG00000035378.18	novel	1990	11	NA	NA	-52	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	80.3295711428861	126	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAGGTGTAAATAATTAGA	NA	False	NA	-2	True	AATAAA	-18	NA	100648170	100550042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_100550750_100588696_100588818_100607843_100607968_100609199_100609254_100613955_100614084_100625124_100625253_100632219_100632333_100641387_100641549_100642266_100642390_100646660_100646726_100647879
transcript_78112.nnic	chr6	-	1642	11	NNC	ENSMUSG00000035378.18	novel	6816	11	NA	NA	-52	-29223	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	83.0821280420765	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGACTTGCGCAAATAGCC	NA	False	NA	NA	False	AATAAA	-20	NA	100648170	100579266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_100579574_100588696_100588818_100607843_100607968_100609199_100609254_100613928_100614084_100625124_100625253_100632219_100632333_100641387_100641549_100642266_100642390_100646660_100646726_100647879
transcript_78117.known	chr6	-	1638	8	FSM	ENSMUSG00000035378.18	ENSMUST00000089245.7	1638	8	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_2	71.8828411871905	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAGGTGTAAATAATTAG	NA	False	NA	-3	True	AATAAA	-17	NA	100648100	100550043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_100550750_100588696_100588818_100625124_100625253_100632219_100632333_100641387_100641549_100642266_100642390_100646660_100646726_100647879
transcript_78120.nnic	chr6	-	1382	6	NNC	ENSMUSG00000035378.18	novel	6816	11	NA	NA	-52	8387	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	87.0847862717708	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	100648170	100631412	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_100631547_100631724_100632333_100641387_100641549_100642266_100642390_100646660_100646726_100647879
transcript_78123.known	chr6	+	438	1	FSM	ENSMUSG00000079224.6	ENSMUST00000121217.2	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTAGTGGATCTCAAACTT	NA	False	NA	NA	False	NA	NA	NA	100581643	100582081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_100581600_100582100
transcript_78124.known	chr6	+	4874	9	FSM	ENSMUSG00000052144.9	ENSMUST00000063854.7	4874	9	0	0	0	0	multi-exon	FALSE	canonical	3	518	junction_7	39.1144155011934	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACGTGTGGAATTACTTT	9660	False	NA	12	True	AATAAA	-21	NA	100810582	100846895	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_100810879_100811677_100811760_100829445_100829617_100838370_100838465_100840083_100840122_100841639_100841715_100842034_100842179_100842748_100843045_100843217
transcript_78125.known	chr6	-	4104	10	FSM	ENSMUSG00000035357.18	ENSMUST00000075994.11	4104	10	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	4.85340659285368	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGACATGGGTGTTTATTT	NA	False	NA	-4	True	AATAAA	-24	NA	101354858	101126569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_101129030_101130179_101130297_101131154_101131257_101132830_101132894_101133874_101133974_101146094_101146183_101149160_101149409_101331354_101331463_101339099_101339187_101354126
transcript_78127.known	chr6	-	2084	11	FSM	ENSMUSG00000005362.15	ENSMUST00000113239.10	2084	11	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_5	22.0871003076456	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGCTCCTTAATGTCATT	NA	False	NA	-33	True	AATAAA	-17	NA	106777035	106757161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_106758072_106758663_106758796_106759423_106759489_106759871_106759988_106760385_106760471_106761377_106761441_106767792_106767953_106771148_106771299_106771955_106772159_106772842_106772959_106776951
transcript_78138.known	chr6	+	1398	9	FSM	ENSMUSG00000013736.17	ENSMUST00000113248.4	1398	9	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	232.818296907696	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTAAAACTAAATGAAGAGT	NA	False	NA	NA	False	NA	NA	NA	106746126	106758615	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_106746153_106746790_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
transcript_78140.known	chr6	+	1614	9	FSM	ENSMUSG00000013736.17	ENSMUST00000113249.8	1614	9	0	0	0	0	multi-exon	FALSE	canonical	1	13	junction_1	300.377991037959	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAAAATAGTAATCCC	NA	False	NA	NA	False	GATAAA	-38	NA	106746101	106758832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_106746153_106746816_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
transcript_78143.known	chr6	+	2283	9	FSM	ENSMUSG00000013736.17	ENSMUST00000057578.16	2283	9	0	0	0	0	multi-exon	FALSE	canonical	3	574	junction_1	132.149477392081	558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGTCGTTATTTCTGT	NA	False	NA	12	True	AATAAA	-21	NA	106746126	106759435	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_106746218_106746790_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
transcript_78155.known	chr6	-	2784	5	FSM	ENSMUSG00000005362.15	ENSMUST00000147087.2	2784	5	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_4	25.0099980007996	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTGTACCCAGTGACTTG	NA	False	NA	NA	False	AATAAA	-27	NA	106777022	106765708	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_106767953_106771148_106771299_106771955_106772159_106772842_106772959_106776951
transcript_78158.known	chr6	+	1748	3	FSM	ENSMUSG00000034639.8	ENSMUST00000138140.3	1748	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGACTCCCGATCTTATTA	NA	False	NA	6	True	AATAAA	-16	NA	108042022	108054083	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_108042201_108049927_108050081_108052666
transcript_78159.known	chr6	+	1612	2	FSM	ENSMUSG00000034639.8	ENSMUST00000049246.7	1612	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGACTCCCGATCTTATTA	NA	False	NA	6	True	AATAAA	-16	NA	108042005	108054083	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_108042201_108052666
transcript_78162.known	chr6	-	390	1	FSM	ENSMUSG00000091845.2	ENSMUST00000025040.6	390	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24259	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTGTATTTTTTCTTT	NA	False	NA	-7	True	AATAAA	-27	NA	108117470	108117080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_108117100_108117500
transcript_78163.nic	chr6	+	861	4	ISM	ENSMUSG00000030102.12	ENSMUST00000032192.9	9870	62	0	309427	0	-136121	5prime_fragment	FALSE	canonical	3	46	junction_3	9.67241208569794	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGGGATT	NA	False	NA	NA	False	NA	NA	NA	108190056	108218643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_108190315_108191163_108191240_108213938_108214047_108218224
transcript_78176.nnic	chr6	-	874	6	NNC	ENSMUSG00000087341.5	novel	544	4	NA	NA	-9180	112	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_4	16.2061716639063	18	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACAGAAGTCTTGTGTCA	NA	False	NA	-7	True	AATAAA	-14	NA	108600136	108587181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_108587583_108589268_108589394_108590092_108590176_108590321_108590404_108590909_108590955_108599998
transcript_7818.known	chr10	-	1622	9	FSM	ENSMUSG00000000902.14	ENSMUST00000121304.2	1622	9	0	0	0	0	multi-exon	FALSE	canonical	3	799	junction_7	118.779206934547	2051	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATTTCTGTGCAGTAGCA	6864	False	NA	-10	True	AATAAA	-12	NA	75757448	75732610	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_75732923_75733278_75733411_75740217_75740409_75741863_75742031_75745987_75746116_75747352_75747491_75750897_75751028_75752633_75752746_75757136
transcript_78180.known	chr6	+	3113	5	FSM	ENSMUSG00000030103.12	ENSMUST00000032194.11	3113	5	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_3	24.2899156029822	137	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAATGCTGGATTTGTTTT	NA	False	NA	NA	False	ATTAAA	-25	NA	108637589	108643886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_108637954_108638121_108638192_108638465_108638574_108639481_108639606_108641439
transcript_78185.nnic	chr6	-	772	5	NNC	ENSMUSG00000087341.5	novel	544	4	NA	NA	-9180	112	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	14.0779082253011	54	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACAGAAGTCTTGTGTCA	NA	False	NA	-7	True	AATAAA	-14	NA	108600136	108587181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_108587583_108589268_108589374_108590092_108590176_108590909_108590955_108599998
transcript_78186.nnic	chr6	-	763	5	NNC	ENSMUSG00000087341.5	novel	544	4	NA	NA	-9206	112	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	20.1292697334007	22	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACAGAAGTCTTGTGTCA	NA	False	NA	-7	True	AATAAA	-14	NA	108600162	108587181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_108587583_108589268_108589374_108590092_108590176_108590909_108590955_108600033
transcript_78189.nnic	chr6	-	792	5	NNC	ENSMUSG00000087341.5	novel	544	4	NA	NA	-9180	112	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_4	9.35414346693485	86	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACAGAAGTCTTGTGTCA	NA	False	NA	-7	True	AATAAA	-14	NA	108600136	108587181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_108587583_108589268_108589394_108590092_108590176_108590909_108590955_108599998
transcript_7819.known	chr10	-	1660	9	FSM	ENSMUSG00000000902.14	ENSMUST00000000925.10	1660	9	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_7	283.203990084886	1104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGCAGTAGCATAAAACTG	6861	False	NA	-2	True	AATAAA	-20	NA	75757451	75732602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_75732923_75733278_75733411_75740217_75740409_75741863_75742031_75745987_75746116_75747352_75747491_75750897_75751028_75752606_75752746_75757136
transcript_78190.nnic	chr6	-	783	5	NNC	ENSMUSG00000087341.5	novel	544	4	NA	NA	-9206	112	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	19.0656759649376	43	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACAGAAGTCTTGTGTCA	NA	False	NA	-7	True	AATAAA	-14	NA	108600162	108587181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_108587583_108589268_108589394_108590092_108590176_108590909_108590955_108600033
transcript_782.known	chr1	+	2507	9	FSM	ENSMUSG00000025903.15	ENSMUST00000027036.11	2507	9	0	0	0	0	multi-exon	FALSE	canonical	3	734	junction_8	45.3636349403352	2180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTTATATAGTACTGTT	NA	False	NA	21	True	AATAAA	-22	NA	4878045	4916962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4915185
transcript_78205.known	chr6	+	4443	7	FSM	ENSMUSG00000030105.9	ENSMUST00000032196.9	4443	7	0	0	0	0	multi-exon	TRUE	canonical	3	458	junction_6	33.5480583972042	312	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGATGCCTCCTGTGTGTCA	NA	False	NA	NA	False	AATAAA	-18	NA	108760059	108802239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_108760339_108790587_108790669_108791944_108792019_108792218_108792313_108795205_108795274_108795503_108795575_108798463
transcript_78216.nnic	chr6	-	458	3	NNC	ENSMUSG00000044574.6	novel	2894	2	NA	NA	902	-1162	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	1.5	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTTCCCATGTGCTCCT	6408	False	NA	NA	False	NA	NA	NA	112264895	112263979	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_112264170_112264552_112264672_112264746
transcript_78217.known	chr6	-	2894	2	FSM	ENSMUSG00000044574.6	ENSMUST00000053559.5	2894	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAAGAAATATGTTGACC	5505	False	NA	NA	False	AATAAA	-16	NA	112265798	112262817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_112264660_112264746
transcript_78218.known	chr6	+	1730	6	FSM	ENSMUSG00000057604.10	ENSMUST00000032376.6	1730	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.67332005306815	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACACTTTTATCTCGTTAT	NA	False	NA	NA	False	AATAAA	-25	NA	112250718	112307386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_112250934_112282009_112282099_112287446_112287703_112292536_112292873_112305623_112305840_112306768
transcript_78220.known	chr6	-	844	3	FSM	ENSMUSG00000034387.14	ENSMUST00000123254.2	844	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGGAGTGCTGATGTAAC	309	False	NA	NA	False	NA	NA	NA	112352681	112346235	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_112346804_112351739_112351848_112352513
transcript_78221.known	chr6	-	2577	14	FSM	ENSMUSG00000030254.17	ENSMUST00000068487.12	2577	14	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	88.4665550417034	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATGCAATGTGTAATGTC	NA	False	NA	-109	True	CATAAA	-16	NA	112673631	112596935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_112597866_112605422_112605486_112621548_112621709_112626555_112626799_112641056_112641135_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
transcript_78223.nic	chr6	-	2614	13	NIC	ENSMUSG00000030254.17	novel	2577	14	NA	NA	7	-19	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	58.64790182853	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTATTTCCCAGTTTT	NA	False	NA	-3	True	CATAAA	-21	NA	112673640	112596829	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_112597866_112605422_112605486_112621548_112621709_112626555_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
transcript_78228.nic	chr6	-	1784	13	NIC	ENSMUSG00000030254.17	novel	2577	14	NA	NA	7	132	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	58.64790182853	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAATAGTTAATTTATTTT	NA	False	NA	NA	False	NA	NA	NA	112673640	112597659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_112597866_112605422_112605486_112621548_112621709_112626555_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
transcript_78233.known	chr6	-	2577	12	FSM	ENSMUSG00000030254.17	ENSMUST00000077088.11	2577	12	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	49.718048005937	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGCCTTTGTTTGGCAA	NA	False	NA	16	True	CATAAA	-40	NA	112673647	112596810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_112597866_112621548_112621709_112626555_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
transcript_78238.nic	chr6	-	3625	12	NIC	ENSMUSG00000030254.17	novel	3535	12	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	172	junction_1	27.9506649191301	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTTGTTGTTGTTGTA	NA	False	NA	-4	True	AATAAA	-20	NA	112673640	112603375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_112605486_112621548_112621709_112626555_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
transcript_78239.nic	chr6	-	1865	12	NIC	ENSMUSG00000030254.17	novel	2577	14	NA	NA	7	-1760	combination_of_known_junctions	FALSE	canonical	3	172	junction_1	27.9506649191301	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCTGCTTCATTCCTCC	NA	False	NA	NA	False	AATAAA	-16	NA	112673640	112605135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_112605486_112621548_112621709_112626555_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
transcript_78244.known	chr6	+	643	2	FSM	ENSMUSG00000108103.2	ENSMUST00000204406.2	643	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAGGTCAGCAGCCTAGG	NA	False	NA	NA	False	NA	NA	NA	112923997	112926291	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_112924148_112925798
transcript_7825.known	chr10	-	714	7	FSM	ENSMUSG00000050157.7	ENSMUST00000219979.2	714	7	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	8.23441288469042	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGCCCCCCCCCCACTC	4977	False	NA	NA	False	NA	NA	NA	75776445	75774009	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_75774191_75774995_75775166_75775239_75775315_75775546_75775673_75775764_75775852_75776227_75776255_75776397
transcript_78250.known	chr6	+	2163	10	FSM	ENSMUSG00000030264.15	ENSMUST00000032398.15	2163	10	0	0	0	0	multi-exon	TRUE	canonical	3	600	junction_1	54.2445309298778	1713	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTATGGAAGCGTTATTTT	NA	False	NA	3	True	ATTAAA	-16	NA	113023185	113045234	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_113023352_113024375_113024666_113026299_113026378_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
transcript_78262.known	chr6	+	1764	5	FSM	ENSMUSG00000030264.15	ENSMUST00000137396.8	1764	5	0	0	0	0	multi-exon	FALSE	canonical	3	600	junction_1	68.2953146269933	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATGAAAAGAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	113023275	113037758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_113023352_113024375_113024666_113026299_113026378_113032599_113033077_113036915
transcript_78269.nic	chr6	+	835	4	NIC	ENSMUSG00000030264.15	novel	649	3	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_3	301.439877919296	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTTTTTGTTGTTGTTTT	NA	False	NA	28	True	ATTAAA	-22	NA	113023165	113027998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_113023352_113024375_113024666_113026299_113026378_113027717
transcript_78273.known	chr6	+	558	3	FSM	ENSMUSG00000030264.15	ENSMUST00000145054.8	558	3	0	0	0	0	multi-exon	FALSE	canonical	3	600	junction_1	91.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAGCATGTGATTACAGTA	NA	False	NA	NA	False	AATATA	-8	NA	113023287	113026503	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_113023352_113024375_113024666_113026299
transcript_78275.known	chr6	-	412	3	FSM	ENSMUSG00000086429.10	ENSMUST00000133467.3	412	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATAAGTCATTAGGCTAC	NA	False	NA	NA	False	NA	NA	NA	113054138	113044619	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_113044780_113048254_113048397_113054028
transcript_78276.known	chr6	-	551	3	FSM	ENSMUSG00000086429.10	ENSMUST00000167415.8	551	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	15	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGGAGGTGAGTGATTTAA	NA	False	NA	NA	False	NA	NA	NA	113054152	113044388	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_113044780_113048254_113048397_113054134
transcript_78277.known	chr6	-	1181	2	FSM	ENSMUSG00000086429.10	ENSMUST00000124246.4	1181	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGAATGACTTTTTAAT	NA	False	NA	0	True	NA	NA	NA	113054171	113047358	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_113048397_113054028
transcript_78278.known	chr6	-	822	2	FSM	ENSMUSG00000086429.10	ENSMUST00000159544.3	822	2	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	0	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGCAGACTTGTTCGTG	NA	False	NA	NA	False	NA	NA	NA	113054294	113047734	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_113048397_113054134
transcript_78279.known	chr6	+	649	3	FSM	ENSMUSG00000030264.15	ENSMUST00000134657.3	649	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	355.5	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTTTTTGTTGTTGTTTT	NA	False	NA	28	True	ATTAAA	-22	NA	113024375	113027998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_113024666_113026299_113026378_113027717
transcript_78286.known	chr6	+	6755	22	FSM	ENSMUSG00000034269.13	ENSMUST00000042889.12	6755	22	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	22.3513482018403	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTAACAATGTGTTTGTTC	7843	False	NA	23	True	NA	NA	NA	113054325	113130396	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_113054674_113081895_113082083_113086845_113086952_113087334_113087487_113087826_113087886_113088318_113088498_113091804_113092048_113092488_113092638_113092965_113093084_113093740_113093851_113094328_113094579_113095218_113095306_113096376_113096635_113097801_113098123_113098528_113098772_113105372_113105503_113114913_113115162_113120573_113121045_113124400_113124700_113126515_113126650_113127062_113127152_113127822
transcript_78289.known	chr6	+	2180	3	FSM	ENSMUSG00000034269.13	ENSMUST00000143998.8	2180	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	21	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTTTTTGTGTGGTTTTT	7843	False	NA	NA	False	AATAAA	-16	NA	113054325	113084522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_113054674_113081895_113082083_113082877
transcript_78292.known	chr6	+	839	4	FSM	ENSMUSG00000034269.13	ENSMUST00000136128.8	839	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	41.8170619085878	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATAATGTTGATTTTTATT	8039	False	NA	NA	False	ATTAAA	-27	NA	113054521	113083280	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_113054674_113081895_113082083_113082625_113082723_113082877
transcript_78294.known	chr6	+	2676	19	FSM	ENSMUSG00000030269.15	ENSMUST00000113146.9	2676	19	0	0	0	0	multi-exon	FALSE	canonical	3	298	junction_17	28.028204489649	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCTCAGTCCCCATCAG	1968	False	NA	NA	False	NA	NA	NA	113214803	113258353	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_113215083_113217245_113217395_113226831_113226941_113230691_113230768_113231050_113231112_113232776_113232900_113233983_113234058_113237548_113237620_113238166_113238242_113242404_113242472_113242930_113243017_113243220_113243298_113243519_113243557_113245588_113245657_113246461_113246521_113246692_113246832_113247482_113247663_113254750_113254907_113257563
transcript_78295.nic	chr6	+	2327	18	NIC	ENSMUSG00000030269.15	novel	2676	19	NA	NA	-3	0	combination_of_known_junctions	TRUE	canonical	3	55	junction_17	76.4492277859348	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGCTTTTCATTAGCATT	1965	False	NA	13	True	AATAAA	-14	NA	113214800	113258157	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_113215083_113217245_113217395_113226831_113226941_113230691_113230768_113231050_113231112_113232776_113232900_113233983_113234058_113237548_113237620_113238166_113238242_113242404_113242472_113242930_113243017_113243220_113243298_113243519_113243557_113245588_113245657_113246461_113246521_113246692_113246832_113247482_113247663_113257563
transcript_78298.known	chr6	+	1205	8	FSM	ENSMUSG00000030269.15	ENSMUST00000134945.8	1205	8	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_7	109.774908846443	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGCTTTTCATTAGCATT	5074	False	NA	13	True	AATAAA	-14	NA	113242965	113258157	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_113243017_113243220_113243298_113243519_113243557_113245588_113245657_113246461_113246521_113246692_113246832_113247482_113247663_113257563
transcript_783.known	chr1	+	877	8	FSM	ENSMUSG00000025903.15	ENSMUST00000150971.8	877	8	0	0	0	0	multi-exon	FALSE	canonical	3	756	junction_6	40.2700070696263	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTAAAAATCTGATCGCC	NA	False	NA	NA	False	AATAAA	-34	NA	4878052	4911509	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178
transcript_78301.nic	chr6	+	1855	17	ISM	ENSMUSG00000030270.12	ENSMUST00000130191.8	2115	21	1386	0	1331	0	3prime_fragment	FALSE	canonical	0	0	junction_1	6.71635131600484	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTCTCTGTCTCATGGGT	NA	False	NA	1	True	AATAAA	-12	NA	113260656	113281785	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_113260944_113261165_113261169_113261345_113261423_113266945_113267010_113267127_113267232_113267365_113267471_113268998_113269041_113269326_113269403_113269482_113269537_113269963_113270026_113270669_113270717_113271572_113271755_113271986_113272115_113277523_113277627_113278600_113278659_113279009_113279084_113281396
transcript_78304.nic	chr6	+	1688	16	ISM	ENSMUSG00000030270.12	ENSMUST00000130191.8	2115	21	1775	0	1720	0	3prime_fragment	FALSE	canonical	0	0	junction_1	6.38957484240279	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTCTCTGTCTCATGGGT	NA	False	NA	1	True	AATAAA	-12	NA	113261045	113281785	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_113261169_113261345_113261423_113266945_113267010_113267127_113267232_113267365_113267471_113268998_113269041_113269326_113269403_113269482_113269537_113269963_113270026_113270669_113270717_113271572_113271755_113271986_113272115_113277523_113277627_113278600_113278659_113279009_113279084_113281396
transcript_78306.nic	chr6	+	1714	15	ISM	ENSMUSG00000030270.12	ENSMUST00000130191.8	2115	21	1926	0	1871	0	3prime_fragment	FALSE	canonical	0	0	junction_6	5.90053612230382	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTCTCTGTCTCATGGGT	NA	False	NA	1	True	AATAAA	-12	NA	113261196	113281785	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_113261423_113266945_113267010_113267127_113267232_113267365_113267471_113268998_113269041_113269326_113269403_113269482_113269537_113269963_113270026_113270669_113270717_113271572_113271755_113271986_113272115_113277523_113277627_113278600_113278659_113279009_113279084_113281396
transcript_78308.nnic	chr6	+	1043	7	NNC	ENSMUSG00000030270.12	novel	2777	21	NA	NA	-507	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	6.49786289653931	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTCTCTGTCTCATGGGT	2899	False	NA	1	True	AATAAA	-12	NA	113270778	113281785	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_113270888_113271572_113271755_113271986_113272115_113277523_113277627_113278600_113278659_113279009_113279084_113281396
transcript_78310.nnic	chr6	+	835	5	NNC	ENSMUSG00000030270.12	novel	2777	21	NA	NA	5429	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	7.07106781186548	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTCTCTGTCTCATGGGT	8835	False	NA	1	True	AATAAA	-12	NA	113276714	113281785	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_113276926_113277523_113277627_113278600_113278659_113279009_113279084_113281396
transcript_78315.known	chr6	-	606	3	FSM	ENSMUSG00000085012.2	ENSMUST00000156734.2	606	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCTGAGTGAGTGGCCAA	4068	False	NA	NA	False	ATTAAA	-14	NA	113303708	113285626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_113285797_113297400_113297656_113303527
transcript_78316.known	chr6	-	1496	12	FSM	ENSMUSG00000030272.16	ENSMUST00000032409.15	1496	12	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	8.10570659096682	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCGTTTGCTCAAATAGC	5793	False	NA	NA	False	AATAAA	-20	NA	113320945	113311084	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_113311370_113311474_113311593_113313134_113313223_113313318_113313398_113314153_113314267_113315071_113315148_113315240_113315368_113316245_113316385_113316467_113316543_113317252_113317385_113318828_113318944_113320796
transcript_78326.nnic	chr6	+	1429	7	NIC	ENSMUSG00000030271.15	novel	1549	7	NA	NA	-13	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_2	89.2070002235749	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCAGTGAAGAGTGAGAGGG	2295	False	NA	14	True	AATAAA	-23	NA	113303919	113311149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_113304324_113305325_113305441_113306189_113306370_113308731_113308914_113310302_113310454_113310591_113310642_113310802
transcript_78327.known	chr6	+	1601	7	FSM	ENSMUSG00000030271.15	ENSMUST00000136263.4	1601	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	81.0445693567572	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACGCAGTGAAGAGTGAG	2335	False	NA	10	True	AATAAA	-19	NA	113303959	113311145	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_113304324_113305325_113305574_113306106_113306370_113308731_113308914_113310302_113310454_113310591_113310642_113310802
transcript_78329.known	chr6	+	1549	7	FSM	ENSMUSG00000030271.15	ENSMUST00000032406.15	1549	7	0	0	0	0	multi-exon	FALSE	canonical	3	196	junction_2	21.4534379529249	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCAGTGAAGAGTGAGAGGG	2308	False	NA	14	True	AATAAA	-23	NA	113303932	113311149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_113304324_113305325_113305574_113306189_113306370_113308731_113308914_113310302_113310454_113310591_113310642_113310802
transcript_78332.known	chr6	+	1198	7	FSM	ENSMUSG00000030271.15	ENSMUST00000204834.3	1198	7	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_2	91.8055009245089	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCTCCCCCCCCCCCAAC	2349	False	NA	NA	False	NA	NA	NA	113303973	113310946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_113304324_113305325_113305574_113306296_113306370_113308731_113308914_113310302_113310454_113310591_113310642_113310802
transcript_78343.nnic	chr6	+	1516	6	NIC	ENSMUSG00000030271.15	novel	1549	7	NA	NA	-118	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_4	90.4464482442511	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCAGTGAAGAGTGAGAGGG	2190	False	NA	14	True	AATAAA	-23	NA	113303814	113311149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_113304324_113305325_113305574_113306189_113306370_113308731_113308914_113310591_113310642_113310802
transcript_78348.known	chr6	-	1208	2	FSM	ENSMUSG00000030272.16	ENSMUST00000156853.2	1208	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAAAAGGACTAGCCATCA	5814	False	NA	NA	False	AAAAAG	-6	NA	113320924	113317863	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_113318944_113320796
transcript_78351.nic	chr6	-	2263	10	NIC	ENSMUSG00000048930.13	novel	1708	10	NA	NA	9	0	intron_retention	FALSE	canonical	3	134	junction_9	97.0713114476818	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTATAAAAAAACCACCCGC	NA	False	NA	18	True	AATAAA	-36	NA	113354835	113343615	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113351846_113351969_113352221_113352800_113353026_113353852_113353907_113354276
transcript_78352.nnic	chr6	-	1934	10	NIC	ENSMUSG00000048930.13	novel	1708	10	NA	NA	20	0	combination_of_known_splicesites	FALSE	canonical	3	29	junction_9	124.029068675626	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTATAAAAAAACCACCCGC	NA	False	NA	18	True	AATAAA	-36	NA	113354680	113343615	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113351846_113351969_113352221_113352800_113353026_113353852_113353907_113354450
transcript_78356.known	chr6	-	2848	9	FSM	ENSMUSG00000048930.13	ENSMUST00000032410.14	2848	9	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_8	58.2875415504892	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTAGTATCTATCTATT	NA	False	NA	NA	False	TATAAA	-13	NA	113354844	113342985	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113351846_113351969_113352221_113352800_113353026_113354276
transcript_78365.known	chr6	-	1577	4	FSM	ENSMUSG00000048930.13	ENSMUST00000113107.8	1577	4	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_3	104.209191319939	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAAATTCTGGTTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	113354700	113351346	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_113352221_113352800_113353026_113353852_113353907_113354276
transcript_78374.known	chr6	+	1323	5	FSM	ENSMUSG00000079426.14	ENSMUST00000203578.3	1323	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	519.345922772096	728	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTCTGTGCTCTGTGTGGG	NA	False	NA	38	True	ATTAAA	-30	NA	113355107	113366613	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_113355170_113358923_113359036_113361042_113361139_113362450_113362622_113365731
transcript_78375.known	chr6	+	695	4	FSM	ENSMUSG00000079426.14	ENSMUST00000171058.8	695	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	553.404212327863	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTCTGGGCGGGCCTGG	NA	False	NA	112	True	NA	NA	NA	113355153	113366143	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_113355170_113361042_113361139_113362450_113362622_113365731
transcript_78376.known	chr6	+	2270	6	FSM	ENSMUSG00000079426.14	ENSMUST00000156898.5	2270	6	0	0	0	0	multi-exon	FALSE	canonical	3	688	junction_1	248.294985853521	1286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGAAGGGTGCTTTTTGGA	NA	False	NA	NA	False	NA	NA	NA	113355075	113367409	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_113355170_113357686_113357806_113358923_113359036_113361042_113361139_113362450_113362622_113365731
transcript_78377.known	chr6	+	2517	9	FSM	ENSMUSG00000030276.20	ENSMUST00000203925.2	2517	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_8	6.78232998312527	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAAATTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	113374718	113391523	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_113375020_113375730_113375846_113376627_113376733_113378262_113378459_113382259_113382409_113384136_113384381_113385865_113386302_113389749_113390021_113390823
transcript_7838.known	chr10	-	2288	8	FSM	ENSMUSG00000000901.18	ENSMUST00000000924.13	2288	8	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_3	14.5349683908307	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCCTGTCTGTTTTTCTTT	5056	False	NA	-3	True	ATTAAA	-17	NA	75768336	75759055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_75759950_75761253_75761512_75762244_75762462_75762581_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
transcript_78388.known	chr6	-	1224	9	FSM	ENSMUSG00000051169.15	ENSMUST00000060634.14	1224	9	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	50.3374549912885	702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAAGCAGATGTTTACC	NA	False	NA	-18	True	AATAAA	-32	NA	113396280	113392289	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_113392684_113393267_113393394_113393749_113393874_113394101_113394187_113394264_113394373_113394807_113394908_113394991_113395037_113395770_113395911_113396178
transcript_7839.known	chr10	-	1793	9	FSM	ENSMUSG00000000901.18	ENSMUST00000120281.8	1793	9	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	51.1639521538358	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCCTGTCTGTTTTTCTTT	5083	False	NA	-3	True	ATTAAA	-17	NA	75768309	75759055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_75759325_75759792_75759950_75761253_75761512_75762244_75762462_75762581_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
transcript_78396.nic	chr6	-	1377	8	NIC	ENSMUSG00000051169.15	novel	1269	9	NA	NA	-40	0	intron_retention	FALSE	canonical	3	151	junction_2	16.318263212907	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAAGCAGATGTTTACC	NA	False	NA	-18	True	AATAAA	-32	NA	113396341	113392289	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_113392684_113393267_113393408_113393749_113393874_113394101_113394373_113394807_113394908_113394991_113395037_113395770_113395911_113396178
transcript_784.known	chr1	+	2547	10	FSM	ENSMUSG00000033813.16	ENSMUST00000081551.14	2547	10	0	0	0	0	multi-exon	TRUE	canonical	3	1526	junction_2	186.842443693696	2914	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACATGTTTTTTGTCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	4928036	4968128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578
transcript_7840.known	chr10	+	1488	5	FSM	ENSMUSG00000049422.8	ENSMUST00000219839.2	1488	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	7283.8894829617	16824	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTGCCCATTTA	4503	False	NA	23	True	ATTAAA	-20	NA	75768963	75773581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_75769333_75771248_75771839_75772071_75772280_75773140_75773289_75773408
transcript_7841.known	chr10	+	405	2	FSM	ENSMUSG00000049422.8	ENSMUST00000219435.2	405	2	0	0	0	0	multi-exon	FALSE	canonical	3	16591	junction_1	0	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCTGCTGTGTGCCCAT	8593	False	NA	20	True	ATTAAA	-17	NA	75773053	75773578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_75773289_75773408
transcript_78413.known	chr6	-	1045	8	FSM	ENSMUSG00000051169.15	ENSMUST00000129047.8	1045	8	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_1	16.8607744272235	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTTTCGAGCGTTTGTGC	NA	False	NA	NA	False	NA	NA	NA	113396280	113393066	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_113393408_113393749_113393874_113394101_113394187_113394264_113394373_113394807_113394908_113394991_113395037_113395770_113395911_113396178
transcript_78415.known	chr6	+	1147	2	FSM	ENSMUSG00000051256.11	ENSMUST00000204254.2	1147	2	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	0	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTAAGACTGTCCTGTG	NA	False	NA	13	True	AATAAA	-17	NA	113419570	113425170	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_113419766_113424218
transcript_78416.known	chr6	+	1201	2	FSM	ENSMUSG00000051256.11	ENSMUST00000101070.5	1201	2	0	0	0	0	multi-exon	FALSE	canonical	3	705	junction_1	0	3563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGTGTTGGAGATTTGAT	NA	False	NA	33	True	AATAAA	-37	NA	113419529	113425190	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_113419759_113424218
transcript_78417.nic	chr6	+	2347	18	NIC	ENSMUSG00000030281.17	novel	2302	17	NA	NA	27	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_5	8.17117899020487	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTAGCACTCGTGTATC	5783	False	NA	6	True	AATAAA	-21	NA	113448414	113460101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_113448749_113449031_113449054_113449191_113449345_113449587_113449651_113449738_113449849_113451121_113451234_113451513_113451559_113453359_113453500_113453695_113453756_113455824_113455880_113455949_113456132_113456211_113456263_113457090_113457137_113457266_113457389_113457718_113457779_113458144_113458197_113459243_113459340_113459457
transcript_78425.known	chr6	+	2306	10	FSM	ENSMUSG00000030284.12	ENSMUST00000032422.6	2306	10	0	0	0	0	multi-exon	TRUE	canonical	3	165	junction_1	17.0945085399441	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGCTTCAGTCTTAACA	1457	False	NA	13	True	AATAAA	-19	NA	113460257	113470299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_113461038_113461455_113461539_113465031_113465143_113465439_113465532_113466394_113466572_113466655_113466752_113468613_113468698_113468854_113468951_113469084_113469220_113469647
transcript_78432.known	chr6	+	889	2	FSM	ENSMUSG00000030284.12	ENSMUST00000129125.2	889	2	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_1	0	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGAAAAGCTTCAGTCTTA	NA	False	NA	10	True	AATAAA	-16	NA	113468979	113470296	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_113469220_113469647
transcript_78433.nic	chr6	-	1955	3	NIC	ENSMUSG00000045009.10	novel	1903	3	NA	NA	-13	-2	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	0.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTCTGTTGTGTTGTTTC	4272	False	NA	NA	False	NA	NA	NA	113478905	113473230	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_113474046_113474232_113475278_113478810
transcript_78435.known	chr6	-	1903	3	FSM	ENSMUSG00000045009.10	ENSMUST00000205170.2	1903	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	0.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTGTTGTGTTGTTTCTT	4329	False	NA	NA	False	NA	NA	NA	113478848	113473228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_113474049_113474232_113475278_113478810
transcript_78436.known	chr6	-	1956	3	FSM	ENSMUSG00000045009.10	ENSMUST00000205075.2	1956	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATCAAAAGCACTTTTG	4323	False	NA	NA	False	NA	NA	NA	113478854	113473260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_113474049_113474232_113475357_113478810
transcript_78437.known	chr6	-	3424	4	FSM	ENSMUSG00000045009.10	ENSMUST00000204134.3	3424	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	2.62466929133727	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGCCTCGCTCTGGTCAA	4285	False	NA	1	True	AATAAA	-18	NA	113478892	113470885	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_113473027_113473892_113474049_113474232_113475278_113478810
transcript_78439.known	chr6	-	1985	8	FSM	ENSMUSG00000030286.7	ENSMUST00000032425.7	1985	8	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_2	13.3386044002714	681	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTGCTTCTGTGGGTTCT	NA	False	NA	2	True	ATTAAA	-29	NA	113508613	113491834	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_113492993_113494057_113494141_113494842_113494923_113496875_113496958_113497437_113497543_113499274_113499369_113499710_113499769_113508288
transcript_78443.known	chr6	-	1216	1	FSM	ENSMUSG00000030286.7	ENSMUST00000203526.2	1216	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACCAAAAAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	113508579	113507363	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_113507400_113508600
transcript_78444.known	chr6	+	5512	44	FSM	ENSMUSG00000034023.17	ENSMUST00000036340.12	5512	44	0	0	0	0	multi-exon	TRUE	canonical	3	237	junction_19	37.6323336574577	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTGTTGTTGGTTTTTT	NA	False	NA	11	True	ATTAAA	-16	NA	113508642	113573978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_113508710_113510734_113510833_113512729_113512865_113513674_113513743_113513884_113513989_113514567_113514629_113516221_113516275_113519167_113519247_113521970_113522096_113523553_113523642_113525302_113525408_113525810_113525912_113526261_113526371_113526553_113526590_113528720_113528865_113530640_113530776_113532095_113532228_113533223_113533335_113537046_113537157_113538666_113538728_113539333_113539454_113540053_113540128_113540405_113540550_113541254_113541356_113542117_113542234_113543770_113543880_113545168_113545280_113545564_113545678_113547833_113547978_113549604_113549722_113551047_113551177_113551534_113551654_113554325_113554437_113555321_113555453_113558344_113558439_113560372_113560496_113561809_113561904_113562432_113562505_113563170_113563210_113564342_113564418_113565305_113565381_113568119_113568267_113570190_113570293_113572848
transcript_78447.nic	chr6	+	1995	16	ISM	ENSMUSG00000034023.17	ENSMUST00000204827.3	4707	43	-53	42003	-31	280	5prime_fragment	FALSE	canonical	3	240	junction_9	45.6515303382288	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTTTGTTTTTTCTTCG	NA	False	NA	13	True	NA	NA	NA	113508611	113531231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_113508710_113510734_113510833_113512729_113512865_113513674_113513743_113513884_113513989_113514567_113514629_113516221_113516275_113519167_113519247_113521970_113522096_113523553_113523642_113525302_113525408_113525810_113525912_113526261_113526371_113526553_113526590_113528720_113528865_113530640
transcript_78448.nic	chr6	+	1010	9	ISM	ENSMUSG00000034023.17	ENSMUST00000204827.3	4707	43	-53	50950	-31	6604	5prime_fragment	FALSE	canonical	3	301	junction_6	34.8045884187703	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCTGACTTCCATATTT	NA	False	NA	NA	False	NA	NA	NA	113508611	113522284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_113508710_113510734_113510833_113512729_113512865_113513674_113513743_113513884_113513989_113514567_113514629_113516221_113516275_113519167_113519247_113521970
transcript_78453.nic	chr6	+	1586	7	ISM	ENSMUSG00000034023.17	ENSMUST00000204827.3	4707	43	-53	55991	-31	1563	5prime_fragment	FALSE	canonical	3	301	junction_6	36.735163293801	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCAATGCAAGCTGGGTG	NA	False	NA	NA	False	NA	NA	NA	113508611	113517243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_113508710_113510734_113510833_113512729_113512865_113513674_113513743_113513884_113513989_113514567_113514629_113516221
transcript_78454.known	chr6	+	2142	5	FSM	ENSMUSG00000034023.17	ENSMUST00000101051.5	2142	5	0	0	0	0	multi-exon	FALSE	canonical	3	329	junction_3	30.62984655528	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATATTCTTAGAGGATGT	NA	False	NA	NA	False	ATTAAA	-19	NA	113508664	113515680	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_113508710_113510734_113510833_113512729_113512865_113513674_113513743_113513884
transcript_7846.nnic	chr10	+	855	3	NNC	ENSMUSG00000000903.4	novel	729	2	NA	NA	-2227	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0.5	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGGGATTTTGATGATTG	NA	False	NA	NA	False	AATAAA	-31	NA	75776663	75785491	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_75776873_75778993_75779125_75784976
transcript_78460.known	chr6	-	1358	4	FSM	ENSMUSG00000033963.17	ENSMUST00000035870.5	1358	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.942809041582063	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCACATGTTTGATGTTGTC	NA	False	NA	NA	False	AATAAA	-23	NA	113577676	113573722	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_113574314_113574433_113575013_113575569_113575671_113577589
transcript_78463.known	chr6	+	1095	3	FSM	ENSMUSG00000033940.9	ENSMUST00000035725.7	1095	3	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_2	10.5	1670	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGATGTTTATGATCTGTT	NA	False	NA	11	True	AATAAA	-21	NA	113581732	113593912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_113581858_113592736_113592820_113593025
transcript_78464.known	chr6	+	2792	3	FSM	ENSMUSG00000033933.14	ENSMUST00000035673.8	2792	3	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_1	12	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACTGTGTTGTGTTACCT	158	False	NA	19	True	AATAAA	-19	NA	113600919	113608594	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_113601340_113605052_113605176_113606345
transcript_78472.known	chr6	-	1353	9	FSM	ENSMUSG00000030298.11	ENSMUST00000032440.6	1353	9	0	0	0	0	multi-exon	FALSE	canonical	3	942	junction_8	78.4968152220203	6696	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTCATCCCACACAGTGAG	-11	True	NA	-10	True	AATAAA	-23	NA	113717704	113705022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_113705425_113706556_113706704_113707295_113707420_113707734_113707869_113711506_113711641_113712017_113712170_113713332_113713449_113714914_113714960_113717605
transcript_78477.nic	chr6	+	2410	20	NIC	ENSMUSG00000030314.17	novel	2543	21	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	29.4466041008941	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGGCTCAGGTCCTTCC	NA	False	NA	6	True	NA	NA	NA	114620071	114836185	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_114620112_114649751_114649805_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951
transcript_78478.known	chr6	+	2459	20	FSM	ENSMUSG00000030314.17	ENSMUST00000182793.8	2459	20	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	42.1345950463867	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATCTGGGGCTCAGGTCCT	NA	False	NA	3	True	NA	NA	NA	114620087	114836182	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_114620112_114623897_114624019_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951
transcript_78479.known	chr6	+	3761	19	FSM	ENSMUSG00000030314.17	ENSMUST00000032457.17	3761	19	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	29.6327313191359	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTCTTTTTTTCCTACAG	NA	False	NA	NA	False	TATAAA	-15	NA	114620057	114837575	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_114620112_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951
transcript_78483.known	chr6	+	2543	21	FSM	ENSMUSG00000030314.17	ENSMUST00000182902.8	2543	21	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	41.8782759912583	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGGCTCAGGTCCTTCC	NA	False	NA	6	True	NA	NA	NA	114620089	114836185	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_114620112_114648062_114648214_114649751_114649805_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951
transcript_78484.known	chr6	-	1023	6	FSM	ENSMUSG00000030315.16	ENSMUST00000147639.8	1023	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.489897948556636	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTTGCCAAAGCACTAGG	NA	False	NA	NA	False	NA	NA	NA	114946141	114839281	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_114839398_114839716_114839841_114840844_114841041_114867577_114867768_114934896_114934973_114945820
transcript_78485.nic	chr6	-	1249	6	NIC	ENSMUSG00000030315.16	novel	1023	6	NA	NA	-17	118	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	0.489897948556636	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGGGGGAGGGTGGGTG	NA	False	NA	NA	False	NA	NA	NA	114946972	114839033	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_114839398_114839716_114839841_114840844_114841041_114867577_114867768_114934896_114934973_114946673
transcript_78486.known	chr6	-	2028	5	FSM	ENSMUSG00000030315.16	ENSMUST00000032459.14	2028	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAAAAAATAGCTGGTTT	NA	False	NA	NA	False	NA	NA	NA	114898782	114838384	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_114839398_114839716_114839841_114840844_114841041_114867577_114867768_114898277
transcript_78487.known	chr6	-	2198	4	FSM	ENSMUSG00000030315.16	ENSMUST00000152710.8	2198	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.471404520791032	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGAATTGTTCAGAA	7865	False	NA	NA	False	NA	NA	NA	114852068	114837588	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_114839398_114839716_114839841_114840844_114841041_114851999
transcript_78488.nnic	chr6	-	942	8	NNC	ENSMUSG00000030316.14	novel	1168	8	NA	NA	-2316	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_7	202.303873276952	182	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTCACTCTGACTGGCT	NA	False	NA	-34	True	AATAAA	-25	NA	115011542	114981341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_114981481_114987767_114987831_114989118_114989285_114993043_114993190_115002234_115002386_115009180_115009274_115011116_115011212_115011453
transcript_78489.nnic	chr6	-	847	7	NNC	ENSMUSG00000030316.14	novel	1168	8	NA	NA	-2316	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_6	166.976462080405	282	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTCACTCTGACTGGCT	NA	False	NA	-34	True	AATAAA	-25	NA	115011542	114981341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_114981481_114987767_114987831_114989118_114989285_114993043_114993190_115002234_115002386_115009180_115009274_115011453
transcript_78495.known	chr6	-	1168	8	FSM	ENSMUSG00000030316.14	ENSMUST00000032461.12	1168	8	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_6	13.6695699587494	1526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTCACTCTGACTGGCT	NA	False	NA	-34	True	AATAAA	-25	NA	115014837	114981341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_114981481_114987767_114987831_114989118_114989285_114993043_114993190_115002234_115002386_115009180_115009274_115011911_115012095_115014610
transcript_78496.known	chr6	-	724	6	FSM	ENSMUSG00000030316.14	ENSMUST00000154621.3	724	6	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_4	214.016261064434	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAATCAAAAGTGTTGAA	NA	False	NA	NA	False	NA	NA	NA	115014786	114993163	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_114993190_115002234_115002386_115009180_115009274_115011116_115011212_115011911_115012095_115014610
transcript_78497.known	chr6	-	1048	2	FSM	ENSMUSG00000097486.3	ENSMUST00000181883.3	1048	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGGTTTCTACCTTCTG	NA	False	NA	NA	False	AATAAA	-18	NA	115111796	115104560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_115105388_115111575
transcript_78499.nnic	chr6	-	676	4	NNC	ENSMUSG00000107704.2	novel	639	3	NA	NA	-7729	-7485	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1.63299316185545	26	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAGAGCACATTCCATTC	NA	False	NA	-1	True	AATAAA	-20	NA	115521590	115513576	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_115513925_115515501_115515577_115515894_115516008_115521450
transcript_78501.known	chr6	+	2106	12	FSM	ENSMUSG00000042389.14	ENSMUST00000040234.9	2106	12	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_1	38.6343314973604	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTCTCCGACCGGCCTCCA	NA	False	NA	NA	False	AATGAA	-30	NA	115521624	115555589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_115521690_115524782_115524992_115526873_115526956_115530951_115530989_115536553_115537062_115538340_115538419_115542837_115542889_115545656_115545796_115551523_115551561_115552822_115552935_115553856_115553947_115554891
transcript_78503.nic	chr6	+	1748	11	NIC	ENSMUSG00000042389.14	novel	2106	12	NA	NA	-16	-292	combination_of_known_junctions	FALSE	canonical	3	50	junction_2	74.5318723768563	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTTTTGAGAGAATAAATG	NA	False	NA	14	True	AATAAA	-14	NA	115521608	115555297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_115521690_115524782_115524992_115530951_115530989_115536553_115537062_115538340_115538419_115542837_115542889_115545656_115545796_115551523_115551561_115552822_115552935_115553856_115553947_115554891
transcript_7851.nnic	chr10	-	1071	2	Antisense	novelGene_ENSMUSG00000000903.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTGTCCTGTCTCCAAGA	3158	False	NA	NA	False	GGGGCT	-28	NA	75786785	75784768	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr10_-_75785445_75786390
transcript_78511.known	chr6	+	638	4	FSM	ENSMUSG00000042389.14	ENSMUST00000130425.8	638	4	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_1	54.9201440477192	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGGTCTCCCAGCCTTGCT	NA	False	NA	NA	False	TATAAA	-23	NA	115521624	115531233	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_115521690_115524782_115524992_115526873_115526956_115530951
transcript_78514.known	chr6	-	2465	3	FSM	ENSMUSG00000068011.5	ENSMUST00000088962.5	2465	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCTGTTTGGTTCTC	NA	False	NA	NA	False	AGTAAA	-24	NA	115569510	115560504	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_115562531_115563602_115563766_115569234
transcript_78515.known	chr6	-	964	4	FSM	ENSMUSG00000068011.5	ENSMUST00000112957.2	964	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTTATGTTTTTTAAAAAAA	NA	False	NA	NA	False	ACTAAA	-11	NA	115569537	115562082	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_115562531_115563602_115563766_115566305_115566356_115569234
transcript_78517.known	chr6	+	6230	8	FSM	ENSMUSG00000000439.10	ENSMUST00000000449.9	6230	8	0	0	0	0	multi-exon	FALSE	canonical	2	438	junction_3	36.5396066911353	413	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATACCTACACAAAGATCCA	NA	False	NA	NA	False	NA	NA	NA	115578862	115599585	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_115578975_115586541_115586671_115587479_115587662_115588595_115588901_115590287_115590503_115591535_115591647_115594258_115594404_115594554
transcript_78524.known	chr6	+	1142	1	FSM	ENSMUSG00000107994.2	ENSMUST00000203121.2	1142	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATGGCCCACCGTAAACT	NA	False	NA	NA	False	ATTAAA	-12	NA	115652955	115654097	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_115653000_115654100
transcript_78525.known	chr6	-	3070	17	FSM	ENSMUSG00000000441.18	ENSMUST00000000451.14	3070	17	0	0	0	0	multi-exon	FALSE	canonical	3	610	junction_8	72.4119076878934	175	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCAGTGCAGTTTCTTGT	8144	False	NA	0	True	AATAAA	-43	NA	115653596	115595529	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_115596371_115596519_115596655_115596745_115596878_115597169_115597289_115598776_115598824_115599837_115600015_115600424_115600510_115603251_115603370_115603672_115603801_115603899_115603928_115608175_115608330_115609857_115609957_115611513_115611672_115611938_115612042_115614559_115614673_115621370_115621604_115653196
transcript_78526.nnic	chr6	-	1506	13	NNC	ENSMUSG00000059900.15	novel	1554	12	NA	NA	-990	0	at_least_one_novel_splicesite	TRUE	canonical	3	12	junction_9	21.6260837878706	176	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCGACTAAATATTCCTTTA	NA	False	NA	NA	False	AATAAA	-30	NA	115737222	115706091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115715908_115715984_115718501_115718634_115719270_115719349_115736555_115736685_115737065
transcript_7853.nnic	chr10	-	871	2	Antisense	novelGene_ENSMUSG00000000903.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	0	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTGTCCTGTCTCCAAGA	3196	False	NA	NA	False	GGGGCT	-28	NA	75786747	75784768	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr10_-_75785445_75786552
transcript_78530.known	chr6	-	811	12	FSM	ENSMUSG00000059900.15	ENSMUST00000166254.7	811	12	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_9	20.7428171377448	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGTGACCACTGTAACCA	NA	False	NA	NA	False	NA	NA	NA	115739326	115706593	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115715908_115715984_115718501_115718634_115719270_115719349_115739233
transcript_78540.known	chr6	-	843	11	FSM	ENSMUSG00000059900.15	ENSMUST00000170625.8	843	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_8	22.4686448189471	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACCAGAAGGCCACACAAT	NA	False	NA	NA	False	NA	NA	NA	115739371	115706531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115718501_115718634_115719270_115719349_115739233
transcript_78541.nnic	chr6	-	1299	11	NNC	ENSMUSG00000059900.15	novel	1554	12	NA	NA	-990	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_10	21.9501708421597	184	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCGACTAAATATTCCTTTA	NA	False	NA	NA	False	AATAAA	-30	NA	115737222	115706091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115719270_115719349_115736555_115736685_115737065
transcript_78543.nnic	chr6	-	1195	10	NNC	ENSMUSG00000059900.15	novel	1554	12	NA	NA	-1015	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_8	21.1029223884592	196	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCGACTAAATATTCCTTTA	NA	False	NA	NA	False	AATAAA	-30	NA	115737247	115706091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115719270_115719349_115737065
transcript_78544.nnic	chr6	-	1240	10	NIC	ENSMUSG00000059900.15	novel	843	11	NA	NA	-89	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_8	20.2319878739914	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCGACTAAATATTCCTTTA	NA	False	NA	NA	False	AATAAA	-30	NA	115739460	115706091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115719270_115719349_115739233
transcript_78550.known	chr6	-	894	8	FSM	ENSMUSG00000059900.15	ENSMUST00000127728.4	894	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_7	23.8772370466013	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAAAAAGTCGACTA	NA	False	NA	NA	False	AATAAA	-18	NA	115711912	115706103	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115711887
transcript_78552.known	chr6	-	927	7	FSM	ENSMUSG00000059900.15	ENSMUST00000151849.2	927	7	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_5	15.4344492037203	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTGATCTGAGTGTCGGCA	NA	False	NA	NA	False	AATAAA	-16	NA	115712254	115706493	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770
transcript_78560.known	chr6	+	5474	15	FSM	ENSMUSG00000030319.9	ENSMUST00000075995.7	5474	15	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_11	12.5155005933459	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTACTCATTTTCTTCGCTG	NA	False	NA	NA	False	CATAAA	-17	NA	115751498	115782518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_115751640_115757807_115757952_115758568_115758724_115759697_115759822_115762066_115762333_115763836_115763943_115764090_115764231_115766399_115766693_115768152_115768295_115768629_115770133_115772736_115772833_115774830_115775001_115776820_115776986_115778809_115778918_115780597
transcript_7857.nic	chr10	+	1859	6	ISM	ENSMUSG00000033255.9	ENSMUST00000099577.4	2838	14	39289	0	19717	0	3prime_fragment	FALSE	canonical	2	3	junction_3	1.89736659610103	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCAGGTGTCTTGAAGTG	NA	False	NA	9	True	AATAAA	-22	NA	75829636	75845425	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_75829767_75831613_75831765_75836222_75836392_75840528_75840745_75841823_75841927_75844335
transcript_78586.known	chr6	-	517	4	FSM	ENSMUSG00000057841.6	ENSMUST00000081840.6	517	4	0	0	0	0	multi-exon	FALSE	canonical	3	14202	junction_3	1766.83093575915	188894	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTATGTTTTTGGTAAC	NA	False	NA	-24	True	AATAAA	-22	NA	115785708	115782465	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_115782650_115783946_115784129_115784762_115784864_115785658
transcript_78587.known	chr6	-	906	3	FSM	ENSMUSG00000057841.6	ENSMUST00000203816.2	906	3	0	0	0	0	multi-exon	FALSE	canonical	3	17944	junction_1	6	15694	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCGTATTTTCTATGTTTT	NA	False	NA	25	True	AATAAA	-15	NA	115785309	115782472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_115782650_115783946_115784129_115784762
transcript_78589.known	chr6	-	2384	9	FSM	ENSMUSG00000030321.16	ENSMUST00000184428.6	2384	9	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	2.36841191518705	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAAAAACAAAACAT	NA	False	NA	NA	False	NA	NA	NA	115815373	115787856	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_115788195_115789154_115789212_115791461_115791613_115792898_115793113_115794193_115794391_115797005_115797163_115799077_115799264_115800217_115800673_115814744
transcript_78591.known	chr6	-	3614	8	FSM	ENSMUSG00000030322.13	ENSMUST00000032469.13	3614	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	37.2010533096435	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCCCTTTGGCATTGTGTT	7881	False	NA	NA	False	AATAAA	-21	NA	115830332	115817657	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_115819524_115821023_115821128_115821530_115821681_115822274_115822410_115822503_115822579_115825866_115826694_115827578_115827801_115830097
transcript_78592.nnic	chr6	-	1839	8	NNC	ENSMUSG00000030322.13	novel	3614	8	NA	NA	-34	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	47.4604023994568	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAATTGTT	7847	False	NA	NA	False	NA	NA	NA	115830366	115819304	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_115819524_115821023_115821128_115821530_115821681_115822274_115822410_115822503_115822579_115826028_115826694_115827578_115827801_115830097
transcript_78597.known	chr6	-	2551	9	FSM	ENSMUSG00000030321.16	ENSMUST00000032468.12	2551	9	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	3.53553390593274	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTCGTGTGATTTCCTG	NA	False	NA	NA	False	AATAAA	-37	NA	115815373	115787689	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_115788195_115789154_115789211_115791460_115791613_115792898_115793113_115794193_115794391_115797005_115797163_115799077_115799264_115800217_115800673_115814744
transcript_78598.known	chr6	-	2415	3	FSM	ENSMUSG00000030322.13	ENSMUST00000122816.3	2415	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	53	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCAGCTTGTCCTATTCTG	7964	False	NA	NA	False	ATTAAA	-28	NA	115830249	115824652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_115826694_115827578_115827801_115830097
transcript_78599.known	chr6	+	4056	29	FSM	ENSMUSG00000030323.14	ENSMUST00000038234.13	4056	29	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_21	12.6374080266743	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATCAGTGTCTGCGTTT	NA	False	NA	1	True	AATAAA	-13	NA	115830490	115903651	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_115830671_115839675_115839743_115841325_115841411_115852204_115852284_115854435_115854513_115857604_115857672_115858437_115858585_115861296_115861373_115863869_115864062_115864187_115864327_115865681_115865885_115867424_115867563_115868825_115868991_115871182_115871381_115876439_115876581_115879818_115879873_115882755_115882918_115887185_115887353_115889391_115889564_115890832_115890936_115892867_115893009_115893930_115894029_115897311_115897413_115900226_115900393_115900836_115900949_115901307_115901434_115902376_115902457_115902713_115902879_115903196
transcript_78600.known	chr6	+	4122	29	FSM	ENSMUSG00000030323.14	ENSMUST00000112925.8	4122	29	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	9.69483346522091	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGCGTTTTAGCAAATC	NA	False	NA	10	True	AATAAA	-22	NA	115830430	115903660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_115830671_115839675_115839743_115841325_115841411_115852204_115852284_115854435_115854513_115857604_115857672_115858437_115858585_115861296_115861373_115863869_115864062_115864187_115864327_115865681_115865885_115867424_115867563_115868825_115868991_115871182_115871381_115876439_115876581_115879818_115879873_115882755_115882918_115887185_115887353_115889391_115889564_115890832_115890936_115892867_115893009_115893933_115894029_115897311_115897413_115900226_115900393_115900836_115900949_115901307_115901434_115902376_115902457_115902713_115902879_115903196
transcript_78601.known	chr6	+	1122	5	FSM	ENSMUSG00000042279.14	ENSMUST00000161969.4	1122	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGTACATTGGACACTGGA	6083	False	NA	NA	False	AATAAA	-18	NA	115921898	115927197	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_115922044_115924595_115924856_115925564_115925875_115926646_115926707_115926850
transcript_78603.known	chr6	-	5838	6	FSM	ENSMUSG00000030126.18	ENSMUST00000088896.10	5838	6	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_4	4.84148737476408	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGCTTTGTTTTGGTTTT	NA	False	NA	1	True	AATAAA	-28	NA	116170447	115995571	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_115999363_116001762_116001899_116019831_116020767_116110727_116111419_116115155_116115212_116170218
transcript_78607.nnic	chr6	+	623	2	Genic_Genomic	ENSMUSG00000101878.2	novel	387	1	NA	NA	-107	383	multi-exon	FALSE	canonical	3	43	junction_1	0	179	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAATAACCAAAACAC	NA	False	NA	NA	False	AATAAA	-24	NA	116150590	116151467	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr6_+_116150708_116150961
transcript_7861.nnic	chr10	-	889	2	NNC	ENSMUSG00000085662.2	novel	405	2	NA	NA	-53	520	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	0	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGGGGCTCTCTGCTA	7540	False	NA	NA	False	AATAAA	-21	NA	75829879	75828004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_75828750_75829735
transcript_78611.known	chr6	-	441	1	FSM	ENSMUSG00000082474.4	ENSMUST00000118191.2	441	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCACACCGGAGGTTAAT	8700	False	NA	NA	False	NA	NA	NA	116172819	116172378	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_116172400_116172800
transcript_78614.known	chr6	-	787	4	FSM	ENSMUSG00000108030.2	ENSMUST00000203332.2	787	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTAGTGTCTTGTTTTGT	8509	False	NA	NA	False	NA	NA	NA	116184954	116176368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_116176871_116179130_116179220_116184114_116184219_116184862
transcript_78615.known	chr6	+	4307	31	FSM	ENSMUSG00000024104.12	ENSMUST00000036759.11	4307	31	0	0	0	0	multi-exon	TRUE	canonical	3	196	junction_27	51.0355975983648	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGAGTGCATGGAAGCT	NA	False	NA	31	True	AATAAA	-34	NA	116184998	116239647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_116185089_116185167_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116231455_116232009_116232130_116233187_116233251_116233576_116233790_116235602_116236218_116237451_116237630_116239295
transcript_7862.known	chr10	-	405	2	FSM	ENSMUSG00000085662.2	ENSMUST00000131874.2	405	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTTAACACCTTGGAATG	7593	False	NA	NA	False	NA	NA	NA	75829826	75828524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_75828750_75829646
transcript_78626.nnic	chr6	+	1443	2	NNC	ENSMUSG00000042213.18	novel	708	3	NA	NA	85	-31251	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGGGTGGAATTATTTGT	NA	False	NA	NA	False	AATACA	-18	NA	116241310	116251580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_116241707_116250533
transcript_78628.known	chr6	-	3187	2	FSM	ENSMUSG00000059878.13	ENSMUST00000079749.6	3187	2	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	0	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATTGAATGCCAATGTG	NA	False	NA	NA	False	AATAAA	-10	NA	116605960	116600976	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_116604095_116605891
transcript_78629.known	chr6	-	2375	2	FSM	ENSMUSG00000059878.13	ENSMUST00000057540.6	2375	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGGGAAATTGTTTGCA	NA	False	NA	13	True	AATAAA	-36	NA	116605883	116601864	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_116604095_116605738
transcript_7863.nnic	chr10	-	2002	15	NNC	ENSMUSG00000020226.10	novel	3202	15	NA	NA	-4526	-1124	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	4.04817923294422	21	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCGGGAAATGTTTGTGC	NA	False	NA	NA	False	TATAAA	-24	NA	75951321	75894451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_75894734_75896182_75896289_75898047_75898264_75899787_75899957_75906337_75906489_75908261_75908370_75910813_75910950_75917149_75917371_75925739_75925821_75926512_75926619_75939657_75939763_75942540_75942601_75944331_75944437_75945851_75945924_75951237
transcript_78630.known	chr6	-	6460	11	FSM	ENSMUSG00000042129.9	ENSMUST00000035842.7	6460	11	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	5.29528091794949	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCGTGTGTTACTGTTT	8606	False	NA	0	True	AATAAA	-18	NA	116650913	116609968	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_116615260_116616401_116616500_116617193_116617316_116618388_116618441_116618645_116618748_116622056_116622218_116622846_116622939_116624527_116624671_116636485_116636562_116638803_116638898_116650684
transcript_78631.known	chr6	-	1243	10	FSM	ENSMUSG00000042129.9	ENSMUST00000203029.3	1243	10	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	4.44722135470878	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCCGGGCCTCTTCTCTGA	8749	False	NA	NA	False	ATTAAA	-15	NA	116650770	116616184	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_116616500_116617193_116617316_116618388_116618441_116618645_116618748_116622056_116622218_116622846_116622939_116624527_116624671_116636485_116636562_116638803_116638898_116650684
transcript_78641.known	chr6	+	1128	3	FSM	ENSMUSG00000059689.16	ENSMUST00000223041.2	1128	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	10.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGGTATTTTTCATAATT	NA	False	NA	10	True	AATAAA	-17	NA	117818214	117822916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_117818230_117820213_117820354_117821943
transcript_78642.known	chr6	+	1098	3	FSM	ENSMUSG00000059689.16	ENSMUST00000164472.8	1098	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	15	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGGTATTTTTCATAATT	NA	False	NA	10	True	AATAAA	-17	NA	117818202	117822916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_117818230_117820213_117820354_117821985
transcript_78644.known	chr6	+	1231	3	FSM	ENSMUSG00000059689.16	ENSMUST00000112860.2	1231	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	10	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGTATTTTTCATAATTT	NA	False	NA	11	True	AATAAA	-18	NA	117818241	117822917	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_117818359_117820213_117820354_117821943
transcript_78645.known	chr6	+	650	3	FSM	ENSMUSG00000059689.16	ENSMUST00000112858.8	650	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	6	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACACTGGACAGAAACCCTA	NA	False	NA	NA	False	NA	NA	NA	117818241	117822374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_117818359_117820213_117820358_117821985
transcript_78646.known	chr6	+	1355	2	FSM	ENSMUSG00000059689.16	ENSMUST00000127593.8	1355	2	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	117818140	117821479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_117818230_117820213
transcript_78656.known	chr6	+	2812	4	FSM	ENSMUSG00000042097.18	ENSMUST00000172088.8	2812	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	8.52447456836295	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGTCCAATGTGTTCATTT	NA	False	NA	12	True	TTTAAA	-6	NA	117840037	117849726	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_117840104_117843355_117843536_117846178_117846235_117847216
transcript_78658.nnic	chr6	+	974	4	NNC	ENSMUSG00000042097.18	novel	1128	5	NA	NA	-29	-331	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	13.9124245031395	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGGAGGGAAGAAGAAGAG	NA	False	NA	NA	False	NA	NA	NA	117840008	117847097	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_117840104_117843355_117843536_117846178_117846706_117846925
transcript_7866.known	chr10	-	2016	11	FSM	ENSMUSG00000020230.16	ENSMUST00000020452.12	2016	11	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_3	2.63818119165458	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCATTTTGTTCTGTTTCT	NA	False	NA	NA	False	AATAAA	-18	NA	76073671	76043060	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_76043628_76044245_76044418_76045171_76045309_76046231_76046362_76053147_76053324_76056831_76056997_76058282_76058445_76061121_76061305_76062023_76062150_76072545_76072656_76073583
transcript_78661.nic	chr6	+	529	3	ISM	ENSMUSG00000042097.18	ENSMUST00000134619.8	786	4	-29	1268	-29	-227	5prime_fragment	FALSE	canonical	3	15	junction_2	9.5	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGAGGTCCAAGACCCATGG	NA	False	NA	NA	False	AATAAA	-16	NA	117840008	117846432	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_117840104_117843355_117843536_117846178
transcript_78662.known	chr6	+	3158	3	FSM	ENSMUSG00000042097.18	ENSMUST00000079405.15	3158	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	2	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCCCACACGACTACAGG	NA	False	NA	NA	False	AATAAA	-16	NA	117840037	117850252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_117840104_117846178_117846235_117847216
transcript_78665.known	chr6	+	538	2	FSM	ENSMUSG00000042097.18	ENSMUST00000112857.3	538	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATTTTTTATCTTT	NA	False	NA	NA	False	TTTAAA	-26	NA	117840044	117847695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_117840104_117847216
transcript_78667.known	chr6	+	391	5	FSM	ENSMUSG00000042079.14	ENSMUST00000179224.8	391	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	2359.29156474989	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGTGGCCTACCCTGGTC	3729	False	NA	NA	False	NA	NA	NA	117883750	117900759	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_117883801_117884109_117884170_117894430_117894560_117896059_117896121_117900668
transcript_7867.nic	chr10	-	1169	7	ISM	ENSMUSG00000001151.11	ENSMUST00000217838.2	9341	42	-46	81749	-46	-29254	5prime_fragment	FALSE	canonical	3	104	junction_1	4.81028989655394	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGGAGGTAGGCCCAAAC	NA	False	NA	NA	False	AAAAAG	-7	NA	76278666	76268845	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_76268975_76269440_76269616_76269818_76269875_76272259_76272516_76272978_76273051_76275976_76276190_76278398
transcript_78674.known	chr6	+	2271	4	FSM	ENSMUSG00000042079.14	ENSMUST00000167182.8	2271	4	0	0	0	0	multi-exon	TRUE	canonical	3	103	junction_1	2299.04709728956	7030	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGCACAGCTTATGTACT	NA	False	NA	NA	False	AATAAA	-16	NA	117877300	117902582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_117877468_117894430_117894560_117896059_117896121_117900668
transcript_78679.known	chr6	+	956	4	FSM	ENSMUSG00000042079.14	ENSMUST00000179478.8	956	4	0	0	0	0	multi-exon	FALSE	canonical	3	625	junction_1	2053.14430948133	587	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGACAGGCCTGGCACAG	NA	False	NA	NA	False	NA	NA	NA	117893941	117901343	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_117894033_117894430_117894560_117896059_117896121_117900668
transcript_7868.known	chr10	+	6427	29	FSM	ENSMUSG00000001150.8	ENSMUST00000170795.3	6427	29	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_5	51.5606810130608	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCGCCTTAGTTTTATGA	NA	False	NA	12	True	AATAAA	-18	NA	76304760	76351691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_76305049_76305782_76307087_76307256_76307484_76312347_76312427_76312616_76312759_76313553_76313745_76316834_76316975_76318457_76318656_76318948_76319218_76320487_76320651_76324175_76324337_76325168_76325411_76325701_76325902_76326561_76326663_76328694_76328827_76329263_76329378_76332241_76332395_76335289_76335488_76336895_76336965_76337043_76337179_76338485_76338640_76339996_76340256_76340463_76340562_76342131_76342523_76343123_76343382_76344131_76344262_76346853_76347058_76348251_76348403_76351415
transcript_78683.known	chr6	+	2147	4	FSM	ENSMUSG00000042079.14	ENSMUST00000035493.14	2147	4	0	0	0	0	multi-exon	FALSE	canonical	3	2150	junction_1	1335.10981654028	11345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGGCACAGCTTATGTA	3734	False	NA	NA	False	AATAAA	-14	NA	117883755	117902580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_117883801_117894430_117894560_117896059_117896121_117900668
transcript_78684.known	chr6	+	1104	3	FSM	ENSMUSG00000042079.14	ENSMUST00000177570.2	1104	3	0	0	0	0	multi-exon	FALSE	canonical	3	4878	junction_1	99	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGCCTATAGTGCAGGCT	NA	False	NA	NA	False	NA	NA	NA	117894263	117901415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_117894560_117896059_117896121_117900668
transcript_78686.known	chr6	-	550	9	FSM	ENSMUSG00000004988.10	ENSMUST00000204214.3	550	9	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	4.92442890089805	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTGTGGTCTTGTGACC	2519	False	NA	NA	False	ATTAAA	-16	NA	117914296	117910520	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_117910710_117910804_117910843_117911275_117911313_117911386_117911462_117911969_117911994_117912115_117912149_117912814_117912881_117913698_117913742_117914251
transcript_78687.nic	chr6	-	633	9	ISM	ENSMUSG00000004988.10	ENSMUST00000203082.3	815	10	278	0	-79	0	3prime_fragment	FALSE	canonical	1	3	junction_3	4.29389100932942	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGTGGTCTTGTGACCC	2440	False	NA	NA	False	ATTAAA	-17	NA	117914375	117910519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_117910710_117910804_117910843_117911275_117911313_117911386_117911462_117911969_117911994_117912115_117912149_117912814_117912884_117913698_117913742_117914251
transcript_78689.nic	chr6	-	1038	9	NIC	ENSMUSG00000004988.10	novel	815	10	NA	NA	-43	0	intron_retention	TRUE	canonical	1	2	junction_7	5.09748712602592	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGTGGTCTTGTGACCC	2119	False	NA	NA	False	ATTAAA	-17	NA	117914696	117910519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_117910710_117910804_117910843_117911275_117911313_117911386_117911462_117911969_117911994_117912115_117912149_117912814_117912968_117913698_117913742_117914251
transcript_78691.known	chr6	-	586	9	FSM	ENSMUSG00000004988.10	ENSMUST00000204950.3	586	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4.98591766879478	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTGTGGTCTTGTGACC	2519	False	NA	NA	False	ATTAAA	-16	NA	117914296	117910520	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_117910710_117910804_117910843_117911275_117911346_117911386_117911462_117911969_117911994_117912115_117912149_117912814_117912884_117913698_117913742_117914251
transcript_78694.known	chr6	-	522	9	FSM	ENSMUSG00000004988.10	ENSMUST00000203066.3	522	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.1720402163943	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTGTGGTCTTGTGACC	2519	False	NA	NA	False	ATTAAA	-16	NA	117914296	117910520	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_117910679_117910804_117910843_117911275_117911313_117911386_117911462_117911969_117911994_117912115_117912149_117912814_117912884_117913698_117913742_117914251
transcript_78695.nnic	chr6	-	573	8	NIC	ENSMUSG00000004988.10	novel	550	9	NA	NA	-65	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_7	5.31459292506808	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGTGGTCTTGTGACCC	2454	False	NA	NA	False	ATTAAA	-17	NA	117914361	117910519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_117910710_117910804_117910843_117911275_117911313_117911386_117911462_117911969_117911994_117912115_117912149_117912814_117912881_117914251
transcript_78696.nnic	chr6	-	624	8	NIC	ENSMUSG00000004988.10	novel	815	10	NA	NA	-29	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_7	5.11899224776255	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGTGGTCTTGTGACCC	2490	False	NA	NA	False	ATTAAA	-17	NA	117914325	117910519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_117910710_117910804_117910843_117911275_117911313_117911386_117911462_117911969_117911994_117912115_117912149_117912814_117912968_117914251
transcript_7871.known	chr10	-	4522	5	FSM	ENSMUSG00000033126.6	ENSMUST00000049185.6	4522	5	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	3.63145976158349	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGTCTCTCGTGATTCCT	NA	False	NA	NA	False	NA	NA	NA	76304948	76295400	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_76299154_76300090_76300160_76302070_76302200_76303990_76304221_76304607
transcript_78717.known	chr6	+	2227	13	FSM	ENSMUSG00000030134.12	ENSMUST00000203482.2	2227	13	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_10	5.92780641459291	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGGAAAAAAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	118043379	118067532	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_118043424_118057318_118057523_118059974_118060098_118061381_118061520_118062224_118062447_118062733_118062809_118063177_118063271_118063987_118064091_118064167_118064248_118065069_118065262_118066063_118066188_118066395_118066469_118066776
transcript_78723.known	chr6	-	4345	23	FSM	ENSMUSG00000030138.9	ENSMUST00000032237.8	4345	23	0	0	0	0	multi-exon	FALSE	canonical	2	285	junction_22	59.9717047606688	358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGGCCTAGTGATTTATT	8285	False	NA	-1	True	ATTAAA	-16	NA	118396435	118360341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_118360837_118361199_118361362_118365716_118365893_118366199_118366348_118368118_118368242_118369278_118369338_118369504_118369686_118369763_118369953_118373087_118373268_118373723_118373798_118375034_118375117_118380049_118380208_118381216_118381319_118381540_118382302_118384971_118385112_118388442_118388637_118388915_118389038_118390039_118390183_118390691_118390881_118393423_118393504_118394348_118394540_118395369_118395579_118396248
transcript_78727.nic	chr6	-	1439	8	ISM	ENSMUSG00000030138.9	ENSMUST00000032237.8	4345	23	-1	27978	-1	2475	5prime_fragment	FALSE	canonical	2	285	junction_7	46.290564119814	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTTCTTTCCATTGAAC	8284	False	NA	NA	False	AATAAA	-17	NA	118396436	118388319	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_118388637_118388915_118389038_118390039_118390183_118390691_118390881_118393423_118393504_118394348_118394540_118395369_118395579_118396248
transcript_78728.known	chr6	-	3683	6	FSM	ENSMUSG00000030145.15	ENSMUST00000069292.14	3683	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	4.48998886412873	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATTGTGTTTCTATTTA	NA	False	NA	NA	False	AATAAA	-24	NA	118432489	118404279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_118407356_118409817_118409908_118410265_118410393_118430806_118430849_118431637_118431873_118432376
transcript_78730.known	chr6	-	3968	6	FSM	ENSMUSG00000072623.7	ENSMUST00000161170.2	3968	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.01980390271856	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCATGATGTTCATTTATT	NA	False	NA	NA	False	AATAAA	-43	NA	118456281	118438910	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_118442362_118442795_118442860_118443788_118443882_118444199_118444327_118454267_118454386_118456166
transcript_78738.nic	chr6	-	1669	11	ISM	ENSMUSG00000007827.11	ENSMUST00000112830.3	6930	34	-66	46787	-66	-5171	5prime_fragment	FALSE	canonical	3	39	junction_7	9.60468635614927	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGAAAGATTCTGTGATAG	NA	False	NA	NA	False	ATTAAA	-36	NA	118539253	118525055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_118525337_118525790_118525921_118526346_118526499_118526598_118526660_118528929_118529003_118529706_118529741_118531164_118531227_118533156_118533264_118535898_118536073_118536231_118536347_118538773
transcript_78739.known	chr6	-	6930	34	FSM	ENSMUSG00000007827.11	ENSMUST00000112830.3	6930	34	0	0	0	0	multi-exon	TRUE	canonical	3	23	junction_21	12.4668891127898	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATGAATCCTATATTTAT	NA	False	NA	NA	False	AATAAA	-21	NA	118539187	118478268	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_118480118_118482686_118482733_118483336_118483566_118484598_118484814_118485450_118485742_118488526_118488657_118492741_118492855_118494856_118494951_118495301_118495373_118498801_118498955_118499899_118500857_118501905_118502044_118502693_118502878_118504616_118504831_118506394_118506537_118506803_118506838_118509162_118509331_118510275_118510428_118512039_118512105_118516646_118516726_118516807_118516837_118517411_118517511_118519850_118519945_118525274_118525337_118525790_118525921_118526346_118526499_118526598_118526660_118528929_118529003_118529706_118529741_118531164_118531227_118533156_118533264_118535898_118536073_118536231_118536347_118538773
transcript_7874.nic	chr10	-	370	2	ISM	ENSMUSG00000033126.6	ENSMUST00000049185.6	4522	5	246	8545	-5	-747	5prime_fragment	FALSE	canonical	3	38	junction_1	0	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGTTCTTCTCGTACAG	NA	False	NA	NA	False	NA	NA	NA	76304702	76303945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_76304221_76304607
transcript_78742.known	chr6	+	1748	9	FSM	ENSMUSG00000041477.15	ENSMUST00000073909.6	1748	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	19.2447233027654	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAAAATGTTTTATACTGT	NA	False	NA	-12	True	NA	NA	NA	119152248	119197146	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_119152404_119157025_119157067_119160610_119160739_119175888_119175956_119177782_119177913_119183430_119183560_119191730_119192568_119194862_119194941_119196963
transcript_78743.known	chr6	-	4184	8	FSM	ENSMUSG00000030168.14	ENSMUST00000032272.13	4184	8	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_7	32.1685611510775	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTGTGTTTTTTTTT	7325	False	NA	0	True	AATAAA	-21	NA	119394665	119330110	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_119332890_119334176_119334371_119335882_119336071_119336311_119336499_119338788_119338961_119342221_119342342_119347110_119347370_119394380
transcript_78746.known	chr6	-	2174	5	FSM	ENSMUSG00000030170.15	ENSMUST00000117171.8	2174	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	2.73861278752583	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCTCCCTCTCCTTATT	NA	False	NA	NA	False	ATTAAA	-17	NA	119426347	119409491	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_119410818_119417242_119417536_119423295_119423544_119425096_119425234_119426177
transcript_78751.known	chr6	+	1617	12	FSM	ENSMUSG00000030166.15	ENSMUST00000032269.12	1617	12	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_11	16.8914864369477	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCCTTTGGCTTCAGGT	NA	False	NA	3	True	ATTAAA	-16	NA	119879736	119899784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_119879797_119888008_119888103_119889962_119890065_119890859_119890954_119891130_119891199_119892194_119892314_119892927_119893004_119895547_119895748_119895886_119896039_119897070_119897152_119897767_119897990_119899435
transcript_78752.known	chr6	+	1603	11	FSM	ENSMUSG00000030166.15	ENSMUST00000161816.8	1603	11	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_8	12.9769025580067	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAAAAGAAAGGGTGGGGG	NA	False	NA	NA	False	NA	NA	NA	119879688	119898276	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_119879797_119888008_119888103_119889962_119890065_119890859_119890954_119891130_119891199_119892194_119892314_119892927_119893004_119895547_119895748_119895886_119896039_119897070_119897152_119897767
transcript_78753.nic	chr6	+	1837	11	NIC	ENSMUSG00000030166.15	novel	1693	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	31	junction_10	11.5104300527826	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCCTTTGGCTTCAGGT	NA	False	NA	3	True	ATTAAA	-16	NA	119879658	119899784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_119879797_119888008_119888103_119889962_119890065_119890859_119890954_119891130_119891199_119892194_119892314_119892927_119893004_119895547_119896039_119897070_119897152_119897767_119897990_119899432
transcript_78754.known	chr6	+	1604	11	FSM	ENSMUSG00000030166.15	ENSMUST00000161045.8	1604	11	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	16.2419210686421	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGGCTTCAGGTTTTTA	NA	False	NA	8	True	ATTAAA	-21	NA	119879663	119899789	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_119879797_119888008_119888103_119889962_119890065_119891130_119891199_119892194_119892314_119892927_119893004_119895547_119895748_119895886_119896039_119897070_119897152_119897767_119897990_119899432
transcript_78760.known	chr6	+	676	4	FSM	ENSMUSG00000030166.15	ENSMUST00000162590.2	676	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	27.3780122645081	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGAGAACCTTGAAATGT	NA	False	NA	NA	False	NA	NA	NA	119879699	119897774	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_119879797_119895547_119896039_119897070_119897152_119897767
transcript_78762.known	chr6	+	853	4	FSM	ENSMUSG00000041377.13	ENSMUST00000112711.9	853	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.24721912892465	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGAGTTAGTCTTGCTGTCT	NA	False	NA	NA	False	TATAAA	-17	NA	120070310	120177300	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_120070420_120174863_120175096_120175603_120175789_120176973
transcript_78763.known	chr6	+	823	4	FSM	ENSMUSG00000041377.13	ENSMUST00000035244.6	823	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.24721912892465	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCACCGAGTTAGTCTTGC	NA	False	NA	NA	False	TATAAA	-12	NA	120170783	120177295	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_120170868_120174863_120175096_120175603_120175789_120176973
transcript_78768.known	chr6	-	1887	12	FSM	ENSMUSG00000030177.15	ENSMUST00000112703.8	1887	12	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_10	38.004349468349	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACATCAAAACCAGAGAGGAA	NA	False	NA	NA	False	NA	NA	NA	120334433	120301995	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327352_120330961_120331016_120334287
transcript_78772.known	chr6	-	2610	12	FSM	ENSMUSG00000030177.15	ENSMUST00000032283.12	2610	12	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_10	52.5397920824409	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAGGGCTCTACAAAGTC	NA	False	NA	-14	True	AATAAA	-18	NA	120334390	120301283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327406_120330961_120331016_120334287
transcript_7878.known	chr10	+	4667	22	FSM	ENSMUSG00000033105.13	ENSMUST00000048678.7	4667	22	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_9	27.7651309078683	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATCAGATTGATTTATTT	NA	False	NA	NA	False	AATACA	-20	NA	76367440	76391313	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_76367509_76367683_76367853_76369346_76369486_76371392_76371502_76372077_76372200_76374185_76374283_76375618_76375755_76376145_76376255_76376679_76376799_76377652_76377751_76378301_76378330_76379684_76379742_76380298_76380371_76381284_76381336_76381895_76382046_76382596_76382694_76383268_76383375_76385053_76385120_76385636_76385718_76386418_76386590_76388153_76388233_76388770
transcript_78797.known	chr6	-	981	7	FSM	ENSMUSG00000030177.15	ENSMUST00000123114.8	981	7	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_5	42.7762265230999	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGCTTTGTTTTGTTT	NA	False	NA	NA	False	AATATA	-20	NA	120334338	120314733	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327352_120330961_120331016_120334287
transcript_78800.nic	chr6	+	1486	5	ISM	ENSMUSG00000030180.16	ENSMUST00000135802.8	3665	21	-19	37499	-19	-6126	5prime_fragment	FALSE	canonical	3	49	junction_1	4.9180788932265	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGCTCCCATGGACTATT	NA	False	NA	NA	False	NA	NA	NA	120341065	120358935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_120341740_120343530_120343609_120345892_120346016_120351777_120351949_120358495
transcript_78801.known	chr6	+	10944	28	FSM	ENSMUSG00000030180.16	ENSMUST00000005108.10	10944	28	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_13	7.14421307921747	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAAGCTGTTTTTTTACT	NA	False	NA	NA	False	AATAAA	-22	NA	120341084	120421535	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_120341740_120343530_120343609_120345892_120346016_120351777_120351949_120358495_120358631_120359877_120359984_120362582_120362675_120364970_120365130_120365890_120366011_120366513_120366673_120367614_120367797_120371047_120371211_120375898_120376019_120379466_120379662_120381925_120382108_120382820_120382946_120383535_120383687_120385205_120385321_120389115_120389472_120392176_120392316_120395519_120395700_120396360_120396523_120403774_120404327_120404689_120404834_120405178_120405339_120407020_120407242_120408773_120409185_120415947
transcript_78802.nnic	chr6	-	1894	8	NNC	ENSMUSG00000058979.8	novel	1928	8	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	77.5305074911595	88	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTCTTGTGAGGATT	NA	False	NA	35	True	ATTAAA	-21	NA	120508292	120486454	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_120487378_120487591_120487781_120491358_120491534_120494010_120494042_120495404_120495499_120498154_120498268_120500366_120500571_120508127
transcript_78804.known	chr6	-	1928	8	FSM	ENSMUSG00000058979.8	ENSMUST00000075303.7	1928	8	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_3	16.3245151817249	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTCTTGTGAGGATT	NA	False	NA	35	True	ATTAAA	-21	NA	120508280	120486454	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_120487424_120487591_120487781_120491358_120491534_120494010_120494042_120495404_120495499_120498154_120498268_120500366_120500571_120508127
transcript_78805.nnic	chr6	-	1072	8	NNC	ENSMUSG00000058979.8	novel	1882	3	NA	NA	-28	-3364	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	106.890369165833	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAATGAAATTCTTTTGTT	NA	False	NA	NA	False	AAGAAA	-7	NA	120508308	120489818	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_120490030_120490774_120490838_120491358_120491534_120494010_120494042_120495404_120495499_120498154_120498268_120500366_120500571_120508127
transcript_78811.nnic	chr6	-	1015	7	NNC	ENSMUSG00000058979.8	novel	1882	3	NA	NA	-34	-3364	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	80.8386596183341	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAATGAAATTCTTTTGTT	NA	False	NA	NA	False	AAGAAA	-7	NA	120508314	120489818	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_120490030_120491358_120491534_120494010_120494042_120495404_120495499_120498154_120498268_120500366_120500571_120508127
transcript_78814.nic	chr6	-	1154	6	ISM	ENSMUSG00000058979.8	ENSMUST00000075303.7	1928	8	-254	4774	-254	-4774	5prime_fragment	FALSE	canonical	3	207	junction_1	18.740330840196	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGAGATGTGTTGAGTGG	NA	False	NA	NA	False	ATTAAA	-22	NA	120508534	120491228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_120491534_120494010_120494042_120495404_120495499_120498154_120498268_120500366_120500571_120508127
transcript_78818.known	chr6	-	1312	9	FSM	ENSMUSG00000019210.11	ENSMUST00000019354.11	1312	9	0	0	0	0	multi-exon	FALSE	canonical	3	841	junction_3	98.1488028454754	5517	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTTGTTGTTCCTTATG	NA	False	NA	-3	True	ATTAAA	-19	NA	120799754	120772204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_120772726_120774837_120774926_120778003_120778099_120780268_120780338_120781003_120781094_120784546_120784614_120785322_120785433_120795294_120795361_120799548
transcript_78821.known	chr6	+	6925	7	FSM	ENSMUSG00000009112.5	ENSMUST00000009256.4	6925	7	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_2	15.192286054296	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGACTCATCTTTTTGT	NA	False	NA	17	True	AATAAA	-18	NA	120813198	120869803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_120813319_120825416_120825578_120839815_120839924_120842528_120842686_120847726_120847797_120853163_120853308_120863638
transcript_7883.nic	chr10	+	679	6	NIC	ENSMUSG00000033105.13	novel	3969	16	NA	NA	-14	1884	combination_of_known_junctions	FALSE	canonical	3	27	junction_5	92.058676940308	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGCATTATGAAAGTCTGC	NA	False	NA	NA	False	NA	NA	NA	76367407	76373441	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_+_76367509_76367683_76367853_76369346_76369486_76371392_76371502_76372077_76372200_76373402
transcript_78833.nnic	chr6	-	1875	6	NNC	ENSMUSG00000004446.13	novel	2189	6	NA	NA	-44	-265	at_least_one_novel_splicesite	FALSE	canonical	3	75	junction_5	358.381137896514	142	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGGGAGAGCTGTATCT	NA	False	NA	-26	True	AATAAA	-16	NA	120893858	120870079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_120871254_120872579_120872793_120874180_120874321_120877116_120877328_120878683_120878750_120893787
transcript_78836.known	chr6	-	2189	6	FSM	ENSMUSG00000004446.13	ENSMUST00000004560.12	2189	6	0	0	0	0	multi-exon	FALSE	canonical	3	795	junction_5	85.8011654932496	814	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGTCACCAGTTATCATAA	NA	False	NA	NA	False	AGTAAA	-16	NA	120893814	120869814	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_120871254_120872579_120872793_120874180_120874321_120877116_120877328_120878683_120878750_120893694
transcript_7884.nnic	chr10	+	652	6	NNC	ENSMUSG00000033105.13	novel	3969	16	NA	NA	-14	1878	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	102.249498776278	96	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCTGTATGCATTATGAAA	NA	False	NA	NA	False	NA	NA	NA	76367407	76373435	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_76367509_76367683_76367853_76369346_76369486_76371392_76371502_76372077_76372200_76373423
transcript_78842.known	chr6	+	3861	5	FSM	ENSMUSG00000067825.12	ENSMUST00000120066.8	3861	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	16.7406690427832	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAATTTCATCTGTTTC	NA	False	NA	NA	False	NA	NA	NA	121160847	121173144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_121161442_121162668_121162810_121164217_121164526_121167059_121167207_121170473
transcript_78844.nnic	chr6	+	1667	5	NNC	ENSMUSG00000030137.9	novel	2263	5	NA	NA	-8515	-756	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_1	2.06155281280883	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGCCTCTTTCTTTGTGT	NA	False	NA	4	True	AATATA	-15	NA	121179139	121203057	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_121179441_121197342_121197566_121198259_121198409_121199692_121200374_121202744
transcript_78845.nic	chr6	+	703	2	ISM	ENSMUSG00000030108.15	ENSMUST00000064580.14	2234	15	36496	0	35941	0	3prime_fragment	FALSE	canonical	1	1	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGGTTTCTGTCCTCTG	NA	False	NA	NA	False	ATTAAA	-31	NA	121313681	121314692	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_121313945_121314252
transcript_78846.known	chr6	+	638	2	FSM	ENSMUSG00000030108.15	ENSMUST00000142144.8	638	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCTTCTGGGATCTTGG	6703	False	NA	NA	False	NA	NA	NA	121277247	121280252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_121277289_121279655
transcript_78847.known	chr6	+	4605	36	FSM	ENSMUSG00000030111.10	ENSMUST00000032203.9	4605	36	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_3	9.3958740402153	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTCCTTCATTAACTGAG	NA	False	NA	27	True	AATAAA	-25	NA	121613186	121656186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_121613355_121615234_121615419_121616164_121616322_121616473_121616527_121617943_121617965_121618230_121618400_121618947_121619033_121621073_121621195_121621852_121621968_121622110_121622221_121623757_121623920_121624907_121625136_121625563_121625628_121626725_121626869_121631423_121631574_121634338_121634507_121634891_121634968_121636245_121636373_121636878_121637108_121637801_121637929_121638385_121638508_121639351_121639404_121644073_121644158_121645004_121645182_121645487_121645576_121646470_121646628_121646894_121646970_121647860_121648042_121650425_121650650_121651689_121651909_121652077_121652206_121653009_121653101_121653862_121653932_121654940_121655044_121655477_121655520_121656050
transcript_78851.known	chr6	+	2539	8	FSM	ENSMUSG00000007458.15	ENSMUST00000112610.2	2539	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	593.666263697931	2852	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTTTGTCGTTTGTGCT	2664	False	NA	6	True	ATTAAA	-15	NA	122285678	122294639	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_122286126_122288562_122288587_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286
transcript_78853.known	chr6	+	2515	7	FSM	ENSMUSG00000007458.15	ENSMUST00000007602.15	2515	7	0	0	0	0	multi-exon	FALSE	canonical	3	1209	junction_5	55.6586820620906	5133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTTTGTCGTTTGTGCT	2664	False	NA	6	True	ATTAAA	-15	NA	122285678	122294639	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_122286126_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286
transcript_78854.known	chr6	+	2976	6	FSM	ENSMUSG00000007458.15	ENSMUST00000123093.2	2976	6	0	0	0	0	multi-exon	FALSE	canonical	3	1209	junction_4	60.7466871524695	560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTTGGTTGCCTCAAGTT	2943	False	NA	11	True	ATTAAA	-18	NA	122285957	122293748	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_122286126_122289192_122289373_122290217_122292126_122292262_122292394_122293008_122293136_122293286
transcript_78856.known	chr6	-	3289	15	FSM	ENSMUSG00000040669.15	ENSMUST00000160163.8	3289	15	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_12	285.154952506134	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACACCTACCCTAATCCA	9122	False	NA	-11	True	AATAAA	-14	NA	122316571	122295261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122309480_122309637_122310249_122310400_122311028_122311110_122311924_122312043_122313816_122313975_122316556
transcript_78859.known	chr6	-	3612	14	FSM	ENSMUSG00000040669.15	ENSMUST00000161054.8	3612	14	0	0	0	0	multi-exon	FALSE	canonical	3	372	junction_9	201.373802377627	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGCTTCACAAAACAGGAG	9089	False	NA	-131	True	NA	NA	NA	122316604	122294808	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122310249_122310400_122311028_122311110_122311931_122312043_122313816_122313975_122316556
transcript_78862.nnic	chr6	+	797	2	NNC	ENSMUSG00000040657.4	novel	817	2	NA	NA	-3986	2	intron_retention	FALSE	canonical	0	0	junction_1	0	11	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCGTTAGTCACTGGGTC	NA	False	NA	NA	False	AATAAA	-18	NA	122364351	122369648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_122364483_122368982
transcript_78866.known	chr6	-	4725	6	FSM	ENSMUSG00000040649.16	ENSMUST00000068242.9	4725	6	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_5	43.1907397482377	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCACTGCTTTCTTTTGTTT	9240	False	NA	NA	False	AATATA	-21	NA	122463464	122430059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_122433623_122436050_122436255_122437919_122438007_122440936_122441168_122449497_122449723_122463049
transcript_7887.known	chr10	-	4100	35	FSM	ENSMUSG00000001119.8	ENSMUST00000001147.5	4100	35	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	13.9481553641435	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTGCCTCTTTATCTACA	8442	False	NA	0	True	AATAAA	-15	NA	76562002	76544625	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_76546016_76546179_76546210_76546795_76546974_76547116_76547301_76547408_76547519_76548101_76548236_76548698_76548708_76549018_76549056_76549459_76549496_76549706_76549773_76549947_76550011_76550247_76550284_76550491_76550543_76550828_76550892_76551104_76551168_76552094_76552158_76552552_76552616_76552962_76552999_76553095_76553150_76553233_76553297_76553628_76553692_76553892_76553947_76554206_76554252_76554350_76554378_76554812_76554840_76554958_76555004_76555456_76555511_76556794_76556840_76556921_76556943_76557096_76557118_76557236_76557366_76557649_76557810_76559209_76559411_76560772_76560903_76561653
transcript_78876.nnic	chr6	+	506	2	Genic_Genomic	ENSMUSG00000055093.11	novel	471	1	NA	NA	-43	47	multi-exon	FALSE	canonical	2	52	junction_1	0	2607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTGCTTCACAATGCAG	NA	False	NA	3	True	AATAAA	-29	NA	122433819	122434380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr6_+_122433911_122433965
transcript_78877.nnic	chr6	+	500	2	Genic_Genomic	ENSMUSG00000055093.11	novel	471	1	NA	NA	-42	45	multi-exon	FALSE	canonical	0	0	junction_1	0	2705	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGCTGCTTCACAATGC	NA	False	NA	1	True	AATAAA	-27	NA	122433820	122434378	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr6_+_122433875_122433932
transcript_78878.nnic	chr6	-	450	2	Antisense	novelGene_ENSMUSG00000055093.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2317	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGCAGCATCTTAACAACT	NA	False	NA	NA	False	NA	NA	NA	122434380	122433820	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr6_-_122433927_122434036
transcript_78881.nnic	chr6	+	510	2	Genic_Genomic	ENSMUSG00000055093.11	novel	471	1	NA	NA	-42	47	multi-exon	FALSE	canonical	3	216	junction_1	0	2786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTGCTTCACAATGCAG	NA	False	NA	3	True	AATAAA	-29	NA	122433820	122434380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr6_+_122434002_122434051
transcript_78885.known	chr6	+	471	1	FSM	ENSMUSG00000055093.11	ENSMUST00000119780.2	471	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	265076	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTGTATGCGTTAATAAAA	NA	False	NA	-44	True	NA	NA	NA	122433862	122434333	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_122433900_122434300
transcript_78886.known	chr6	-	3039	5	FSM	ENSMUSG00000040649.16	ENSMUST00000204731.2	3039	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	73.4621501182752	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCATATTTTGCAGGGTGC	NA	False	NA	NA	False	AATAAA	-23	NA	122443494	122431218	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_122433623_122436050_122436255_122437919_122438007_122440936_122441168_122443381
transcript_78887.known	chr6	+	1506	10	FSM	ENSMUSG00000030116.15	ENSMUST00000148517.8	1506	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	61.5529481998934	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGCTCACGGGCATGTTT	NA	False	NA	NA	False	TTTAAA	-10	NA	122490541	122506249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_122490692_122491299_122491360_122492306_122492343_122497537_122497571_122497854_122497888_122498851_122498888_122501445_122501470_122502909_122502998_122503745_122503820_122505277
transcript_78889.known	chr6	+	748	9	FSM	ENSMUSG00000030116.15	ENSMUST00000118626.8	748	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	61.1513235752097	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGGGTTTGCTGATTTCT	NA	False	NA	4	True	AATACA	-15	NA	122490617	122505591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_122490692_122491299_122491360_122492306_122492343_122497537_122497571_122497854_122497888_122498851_122498888_122502909_122502998_122503745_122503820_122505277
transcript_7889.nic	chr10	-	2203	16	NIC	ENSMUSG00000001120.16	novel	2544	19	NA	NA	-95	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_5	23.7172229965202	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTCTGACTTCTCTCT	1042	False	NA	-4	True	AATAAA	-17	NA	76797816	76597691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_-_76598361_76599055_76599226_76603697_76603751_76606093_76606154_76606794_76606871_76617665_76617708_76620973_76621049_76624224_76624354_76625571_76625704_76633628_76633746_76634460_76634494_76635362_76635387_76636593_76636749_76661693_76661827_76728390_76728491_76797581
transcript_78890.known	chr6	+	946	9	FSM	ENSMUSG00000030116.15	ENSMUST00000032210.14	946	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	64.2523102697483	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTAACCTTTAGGTTAATA	NA	False	NA	NA	False	GGGGCT	-31	NA	122490541	122505725	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_122490692_122491299_122491360_122492306_122492343_122497537_122497571_122497854_122497888_122501445_122501470_122502909_122502998_122503745_122503820_122505277
transcript_78895.nic	chr6	+	613	5	ISM	ENSMUSG00000030116.15	ENSMUST00000142896.8	425	9	8140	-294	-683	0	3prime_fragment	FALSE	canonical	3	18	junction_1	53.3479146733966	524	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGGGTTTGCTGATTTCT	7048	False	NA	4	True	AATACA	-15	NA	122498774	122505591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_122498888_122501445_122501470_122502909_122502998_122503745_122503820_122505277
transcript_7890.known	chr10	-	2013	16	FSM	ENSMUSG00000001120.16	ENSMUST00000001148.11	2013	16	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_5	18.4407760742931	445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTCTGACTTCTCTCTG	1236	False	NA	-3	True	AATAAA	-18	NA	76797622	76597690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_76598361_76599055_76599226_76603697_76603751_76606093_76606154_76606794_76606874_76617665_76617708_76620973_76621049_76624224_76624354_76625571_76625704_76633628_76633746_76634460_76634494_76635362_76635387_76636593_76636749_76661693_76661827_76728390_76728491_76797581
transcript_78903.nic	chr6	+	580	4	ISM	ENSMUSG00000030116.15	ENSMUST00000118626.8	748	9	8166	0	-674	0	3prime_fragment	FALSE	canonical	1	2	junction_1	68.5921926234239	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGGGTTTGCTGATTTCT	7057	False	NA	4	True	AATACA	-15	NA	122498783	122505591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_122498888_122502909_122502998_122503745_122503820_122505277
transcript_78908.known	chr6	+	1292	4	FSM	ENSMUSG00000040627.15	ENSMUST00000160685.2	1292	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.816496580927726	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGATGAGGACTACGAAGA	NA	False	NA	NA	False	AATAAA	-13	NA	122537443	122540035	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_122537692_122537999_122538271_122538799_122538916_122539378
transcript_78910.known	chr6	-	2127	8	FSM	ENSMUSG00000040613.15	ENSMUST00000112585.8	2127	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	6.10453160549186	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAATTGTTTTTGTGTTTGT	8724	False	NA	NA	False	AGTAAA	-12	NA	122579330	122554759	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_122555895_122557646_122557766_122558311_122558710_122565103_122565132_122568045_122568164_122573590_122573737_122577016_122577085_122579215
transcript_78913.known	chr6	-	2265	8	FSM	ENSMUSG00000040613.15	ENSMUST00000112586.8	2265	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_5	14.3099793921613	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTTTGTGGTGTTTTT	8651	False	NA	NA	False	AGTAAA	-21	NA	122579403	122554750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_122555895_122557646_122557766_122558311_122558710_122565103_122565132_122568045_122568220_122573590_122573737_122577016_122577085_122579215
transcript_78917.known	chr6	-	666	5	FSM	ENSMUSG00000040613.15	ENSMUST00000203309.3	666	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	17.8955301681733	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACGGATCAGCGAAACCGCC	8708	False	NA	NA	False	NA	NA	NA	122579346	122558388	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_122558710_122565103_122565132_122568045_122568164_122577016_122577085_122579215
transcript_78918.known	chr6	-	775	6	FSM	ENSMUSG00000040613.15	ENSMUST00000203204.3	775	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	18.0488226762856	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTACATAGCACGGCTTTA	9953	False	NA	NA	False	NA	NA	NA	122577317	122558414	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_122558710_122565103_122565132_122568045_122568164_122573590_122573737_122577016_122577085_122577197
transcript_7892.nic	chr10	-	1281	11	ISM	ENSMUSG00000001120.16	ENSMUST00000001148.11	2013	16	-194	19869	-95	8077	5prime_fragment	FALSE	canonical	3	104	junction_6	11.0742945599257	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGTTTTCTCCATGTCTCC	1042	False	NA	NA	False	NA	NA	NA	76797816	76617559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_76617708_76620973_76621049_76624224_76624354_76625571_76625704_76633628_76633746_76634460_76634494_76635362_76635387_76636593_76636749_76661693_76661827_76728390_76728491_76797581
transcript_78929.known	chr6	-	427	2	FSM	ENSMUSG00000030117.6	ENSMUST00000204882.2	427	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGGAAAAGTCCAAGATTG	9944	False	NA	NA	False	NA	NA	NA	122586783	122584985	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_122585284_122586654
transcript_78931.known	chr6	-	2125	2	FSM	ENSMUSG00000030117.6	ENSMUST00000032211.5	2125	2	0	0	0	0	multi-exon	FALSE	canonical	3	704	junction_1	0	2115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAAGATTTTGTTAAGGTG	9980	False	NA	NA	False	NA	NA	NA	122587046	122582361	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_122584095_122586654
transcript_78939.known	chr6	+	691	4	FSM	ENSMUSG00000046323.9	ENSMUST00000123429.2	691	4	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	513.829413975754	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCGACTCTTTGTAATTTA	1023	False	NA	24	True	AATAAA	-14	NA	122603711	122607231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_122603771_122605535_122605769_122606259_122606296_122606868
transcript_7894.nnic	chr10	-	1051	3	NNC	ENSMUSG00000112143.2	novel	2014	5	NA	NA	40272	-440	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.5	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGGCTTCTTGTCTTTT	NA	False	NA	NA	False	AATACA	-1	NA	76804131	76800926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_76801816_76802193_76802285_76804060
transcript_78941.known	chr6	+	833	4	FSM	ENSMUSG00000046323.9	ENSMUST00000049644.9	833	4	0	0	0	0	multi-exon	FALSE	canonical	3	943	junction_3	656.420766141826	11554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCGACTCTTTGTAATTTA	680	False	NA	24	True	AATAAA	-14	NA	122603368	122607231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_122603570_122605535_122605769_122606259_122606296_122606868
transcript_78942.known	chr6	+	882	1	FSM	ENSMUSG00000072789.5	ENSMUST00000121713.2	882	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	133	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTTTTTATATGAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	122672959	122673841	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_122673000_122673800
transcript_78945.nnic	chr6	-	1040	2	Genic_Genomic	ENSMUSG00000080932.4	novel	615	1	NA	NA	-8298	66	multi-exon	FALSE	canonical	3	7	junction_1	0	1663	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAGACAGGGTTTCTC	NA	False	NA	NA	False	AATAAA	-32	NA	122684285	122675306	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr6_-_122676037_122683975
transcript_78946.nnic	chr6	-	1617	2	Genic_Genomic	ENSMUSG00000080932.4	novel	615	1	NA	NA	-8378	60	multi-exon	FALSE	canonical	3	11	junction_1	0	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGACAGGG	NA	False	NA	NA	False	AATAAA	-26	NA	122684365	122675312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr6_-_122676037_122683472
transcript_78947.known	chr6	-	615	1	FSM	ENSMUSG00000080932.4	ENSMUST00000119496.2	615	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	212	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACACATGATATTTGTAAAA	NA	False	NA	NA	False	NA	NA	NA	122675987	122675372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_122675400_122676000
transcript_78949.known	chr6	+	1995	5	FSM	ENSMUSG00000012396.13	ENSMUST00000112581.8	1995	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	1913.25775837967	1930	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	18	True	AATAAA	-19	NA	122684447	122691592	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_122684476_122684770_122684893_122688496_122688763_122689587_122689675_122690100
transcript_78952.known	chr6	+	2011	5	FSM	ENSMUSG00000012396.13	ENSMUST00000112580.8	2011	5	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_1	1758.10842953442	1939	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	18	True	AATAAA	-19	NA	122684523	122691592	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_122684568_122684770_122684893_122688496_122688763_122689587_122689675_122690100
transcript_7896.known	chr10	-	5063	42	FSM	ENSMUSG00000001435.16	ENSMUST00000081654.13	5063	42	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_22	34.7938605290869	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGTTTATAAGCTGCCT	5935	False	NA	0	True	AATAAA	-20	NA	77002382	76888011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_76889242_76889988_76890105_76890617_76890816_76891412_76891662_76893202_76893236_76894532_76894665_76894938_76895013_76895091_76895237_76895728_76895858_76896202_76896247_76899812_76899876_76900370_76900414_76901068_76901138_76902783_76902859_76903212_76903267_76903465_76903493_76904223_76904299_76905269_76905333_76905653_76905681_76905783_76905814_76906794_76906885_76907144_76907181_76907437_76907510_76907860_76907897_76908775_76908803_76909573_76909637_76910183_76910316_76911981_76912009_76912992_76913056_76913517_76913677_76913832_76913887_76914109_76914188_76914290_76914354_76915094_76915122_76916512_76916699_76916982_76917060_76921100_76921231_76923209_76923264_76924703_76924791_76931824_76932370_77002123_77002195_77002272
transcript_78960.known	chr6	+	2211	4	FSM	ENSMUSG00000012396.13	ENSMUST00000012540.5	2211	4	0	0	0	0	multi-exon	FALSE	canonical	3	4116	junction_3	205.443152450718	4593	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	18	True	AATAAA	-19	NA	122684526	122691592	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100
transcript_78964.known	chr6	-	3959	10	FSM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	0	0	0	0	multi-exon	FALSE	canonical	3	8407	junction_1	739.604699221896	3453	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTATTTTTCCCCCTCTTG	9816	False	NA	-4	True	AATAAA	-29	NA	122719704	122704767	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
transcript_78966.known	chr6	-	1395	2	FSM	ENSMUSG00000097635.3	ENSMUST00000181317.3	1395	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAGAAGAGGAAGAAG	4627	False	NA	NA	False	NA	NA	NA	122797573	122790577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_122791815_122797415
transcript_78969.known	chr6	+	2476	8	FSM	ENSMUSG00000030327.9	ENSMUST00000032477.6	2476	8	0	0	0	0	multi-exon	FALSE	canonical	3	520	junction_7	29.158959137102	726	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGGTTTTTCATCTTTTA	788	False	NA	9	True	ATTAAA	-15	NA	122851432	122865900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_122851623_122857371_122857473_122857616_122857722_122858459_122858542_122859226_122859336_122859772_122859957_122863710_122863814_122864298
transcript_78974.nnic	chr6	+	1618	7	NNC	ENSMUSG00000049037.9	novel	1558	6	NA	NA	-705	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	7.84573486395988	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGTGTGTAAACTAGGAAA	NA	False	NA	NA	False	NA	NA	NA	122898101	122911578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_122898238_122898882_122899039_122901675_122901790_122904922_122905025_122907635_122907788_122909107_122909224_122910736
transcript_78977.known	chr6	+	1558	6	FSM	ENSMUSG00000049037.9	ENSMUST00000060484.9	1558	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	6.56048778674269	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGTGTGTAAACTAGGAAA	NA	False	NA	NA	False	NA	NA	NA	122898806	122911578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_122899039_122901675_122901790_122904922_122905025_122907635_122907788_122909107_122909224_122910736
transcript_78978.known	chr6	-	3139	16	FSM	ENSMUSG00000005069.13	ENSMUST00000035861.6	3139	16	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_9	30.6939009504422	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGACTGACGTGGGTAGGT	NA	False	NA	-16	True	AATAAA	-29	NA	124391996	124373790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_124375130_124375302_124375461_124375739_124375906_124376206_124376414_124376817_124376889_124377046_124377191_124380074_124380195_124380770_124380867_124381091_124381203_124381588_124381680_124382125_124382232_124390227_124390360_124390527_124390661_124390965_124391002_124391245_124391410_124391931
transcript_78979.known	chr6	-	3075	15	FSM	ENSMUSG00000005069.13	ENSMUST00000112531.8	3075	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_14	32.7566787083184	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTTCCGCTGCTGACGTT	NA	False	NA	-1	True	AATAAA	-44	NA	124391822	124373775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_124375130_124375302_124375461_124375739_124375906_124376206_124376414_124376817_124376889_124377046_124377191_124380074_124380195_124380770_124380867_124381588_124381680_124382125_124382232_124390227_124390360_124390527_124390661_124390965_124391002_124391245_124391410_124391725
transcript_78980.known	chr6	-	3073	15	FSM	ENSMUSG00000005069.13	ENSMUST00000080557.12	3073	15	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_8	13.6099078555564	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTTCCGCTGCTGACGTT	NA	False	NA	-1	True	AATAAA	-44	NA	124392026	124373775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_124375130_124375302_124375461_124375739_124375906_124376206_124376414_124376817_124376889_124377046_124377191_124380074_124380195_124380770_124380867_124381588_124381680_124382125_124382232_124390227_124390360_124390527_124390661_124390965_124391002_124391245_124391410_124391931
transcript_78984.known	chr6	+	3010	6	FSM	ENSMUSG00000038527.10	ENSMUST00000049124.10	3010	6	0	0	0	0	multi-exon	TRUE	canonical	2	10	junction_3	3.13687742827162	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAAATATGGTTGATTCT	NA	False	NA	NA	False	NA	NA	NA	124470071	124487602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_124470190_124470773_124471003_124482189_124482380_124483850_124483953_124484048_124484124_124485306
transcript_78988.known	chr6	-	2906	12	FSM	ENSMUSG00000038521.18	ENSMUST00000162443.8	2906	12	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	4.09797369803078	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGCTGGTCTGCTTTTTTT	NA	False	NA	NA	False	AGTAAA	-14	NA	124519318	124507306	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_124508700_124509499_124509575_124510232_124510362_124510854_124510934_124511316_124511433_124512191_124512346_124513290_124513491_124514319_124514446_124517279_124517458_124517747_124517956_124518291_124518448_124519226
transcript_78990.known	chr6	+	2281	13	FSM	ENSMUSG00000004270.14	ENSMUST00000004381.14	2281	13	0	0	0	0	multi-exon	TRUE	canonical	3	738	junction_2	58.4776785524946	848	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTATACAGTGTTGTCTC	NA	False	NA	NA	False	AATAAA	-25	NA	124639989	124681381	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_124640323_124675032_124675141_124676201_124676309_124676969_124677064_124677203_124677242_124677635_124677815_124678431_124678541_124679198_124679286_124679374_124679542_124679968_124680117_124680189_124680349_124680457_124680591_124680762
transcript_79.known	ERCC-00165	+	856	1	FSM	ERCC-00165A	DQ668363	856	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	379	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	856	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00165_+_0_900
transcript_79016.known	chr6	-	1034	6	FSM	ENSMUSG00000004268.12	ENSMUST00000004379.8	1034	6	0	0	0	0	multi-exon	FALSE	canonical	3	1245	junction_5	105.298433036774	8864	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTTTCAGACCTGATT	NA	False	NA	-14	True	TATAAA	-19	NA	124689141	124681343	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_124681622_124681901_124682052_124682120_124682180_124682477_124682620_124682703_124682806_124688838
transcript_79017.known	chr6	-	917	5	FSM	ENSMUSG00000004268.12	ENSMUST00000142187.8	917	5	0	0	0	0	multi-exon	FALSE	canonical	3	1245	junction_4	110.261904119238	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAGACTGCAGAGTGGGG	NA	False	NA	-91	True	NA	NA	NA	124689032	124681420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_124681622_124681901_124682180_124682477_124682620_124682703_124682806_124688838
transcript_79024.known	chr6	+	1318	10	FSM	ENSMUSG00000004264.18	ENSMUST00000004375.16	1318	10	0	0	0	0	multi-exon	FALSE	canonical	1	924	junction_9	595.782978965236	9826	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	24	True	AATAAA	-25	NA	124689298	124693913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_124689527_124689666_124689752_124690024_124690105_124690946_124691132_124691792_124691923_124692022_124692127_124692544_124692623_124692916_124692994_124693387_124693394_124693568
transcript_79025.known	chr6	+	593	2	FSM	ENSMUSG00000004264.18	ENSMUST00000150847.8	593	2	0	0	0	0	multi-exon	FALSE	canonical	3	2682	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTCCAGTACCCCATCAT	NA	False	NA	NA	False	NA	NA	NA	124689298	124690031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_124689527_124689666
transcript_79026.known	chr6	-	2219	16	FSM	ENSMUSG00000004266.16	ENSMUST00000112484.10	2219	16	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_10	22.1017847444248	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTGTGCCCCTTGTATC	8730	False	NA	0	True	AATAAA	-28	NA	124710117	124697669	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_124697872_124698042_124698186_124698538_124698631_124698725_124698878_124698973_124699042_124701919_124702075_124702189_124702322_124704347_124704498_124704678_124704759_124705074_124705172_124705299_124705414_124705510_124705628_124705743_124705934_124709262_124709458_124709700_124709824_124709908
transcript_79027.known	chr6	-	2226	16	FSM	ENSMUSG00000004266.16	ENSMUST00000171549.9	2226	16	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_15	37.1732281203676	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTGTGCCCCTTGTATC	8920	False	NA	0	True	AATAAA	-28	NA	124715677	124697669	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_124697872_124698042_124698186_124698538_124698631_124698725_124698878_124698973_124699042_124701919_124702075_124702189_124702322_124704347_124704498_124704678_124704759_124705074_124705172_124705299_124705414_124705510_124705628_124705743_124705934_124709262_124709458_124709700_124709824_124715461
transcript_79033.nic	chr6	-	2390	15	NIC	ENSMUSG00000004266.16	novel	2219	16	NA	NA	0	0	intron_retention	FALSE	canonical	3	99	junction_9	22.8728740508695	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTGTGCCCCTTGTATC	8730	False	NA	0	True	AATAAA	-28	NA	124710117	124697669	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_124698186_124698538_124698631_124698725_124698878_124698973_124699042_124701919_124702075_124702189_124702322_124704347_124704498_124704678_124704759_124705074_124705172_124705299_124705414_124705510_124705628_124705743_124705934_124709262_124709458_124709700_124709824_124709908
transcript_79047.known	chr6	-	863	3	FSM	ENSMUSG00000072772.4	ENSMUST00000004389.6	863	3	0	0	0	0	multi-exon	FALSE	canonical	3	807	junction_1	71.5	9873	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTCAGTCATTTGT	8943	False	NA	NA	False	AATAAA	-17	NA	124718337	124716145	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_124716377_124717481_124717659_124717882
transcript_79048.known	chr6	-	1656	2	FSM	ENSMUSG00000072772.4	ENSMUST00000140423.2	1656	2	0	0	0	0	multi-exon	FALSE	canonical	3	950	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTTTGTGTCAGTCATT	9252	False	NA	NA	False	AATAAA	-14	NA	124718028	124716148	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_124717659_124717882
transcript_79049.known	chr6	-	424	2	FSM	ENSMUSG00000072772.4	ENSMUST00000137318.2	424	2	0	0	0	0	multi-exon	FALSE	canonical	3	807	junction_1	0	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACCTTTGTGTCAGTCAT	9602	False	NA	NA	False	AATAAA	-13	NA	124717678	124716149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_124716377_124717481
transcript_7905.known	chr10	+	2347	6	FSM	ENSMUSG00000001436.16	ENSMUST00000105410.10	2347	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	40.1875602643405	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTCTGTTGTGAGACAC	NA	False	NA	16	True	ATTAAA	-18	NA	76869045	76886265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_76869182_76874183_76874414_76877649_76878404_76878615_76878809_76880594_76880737_76885373
transcript_79050.known	chr6	-	341	2	FSM	ENSMUSG00000004263.16	ENSMUST00000133577.2	341	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCTGTACAGCAGCGACC	9821	False	NA	NA	False	GGGGCT	-19	NA	124722588	124722134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_124722380_124722492
transcript_79051.known	chr6	-	2795	12	FSM	ENSMUSG00000004267.17	ENSMUST00000004378.15	2795	12	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_11	8.77449346328266	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTGGCTGAACTAAGGAT	9866	False	NA	-3	True	NA	NA	NA	124746636	124737017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_124738326_124738610_124738670_124739615_124739725_124739967_124740170_124740689_124740888_124743067_124743291_124743493_124743628_124743995_124744066_124744502_124744562_124744663_124744760_124745200_124745301_124746399
transcript_79057.known	chr6	-	2491	10	FSM	ENSMUSG00000004267.17	ENSMUST00000125436.8	2491	10	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_4	8.26565107262102	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACCCCTTGTCTGAGGAC	8715	False	NA	-6	True	ATTAAA	-17	NA	124745300	124737327	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_124738326_124738610_124738670_124739615_124740170_124740689_124740888_124743067_124743291_124743493_124743628_124743995_124744066_124744502_124744562_124744663_124744760_124745200
transcript_79065.known	chr6	+	1213	3	FSM	ENSMUSG00000038451.14	ENSMUST00000047760.10	1213	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	16	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTTTCATTATTGTTTTT	NA	False	NA	19	True	AGTAAA	-22	NA	124785623	124787582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_124785743_124786189_124786933_124787231
transcript_79068.known	chr6	+	882	3	FSM	ENSMUSG00000038451.14	ENSMUST00000143040.8	882	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	13	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGGTCAAATATCCACTCT	NA	False	NA	NA	False	NA	NA	NA	124785847	124787299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_124785919_124786189_124786933_124787231
transcript_79070.known	chr6	+	1219	3	FSM	ENSMUSG00000038451.14	ENSMUST00000052727.5	1219	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	6.5	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTTTCATTATTGTTTTT	NA	False	NA	19	True	AGTAAA	-22	NA	124785868	124787582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_124785994_124786189_124786933_124787231
transcript_79072.known	chr6	-	691	1	FSM	ENSMUSG00000023456.17	ENSMUST00000204602.2	691	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTAAAAAAAAAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	124791117	124790426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_124790400_124791100
transcript_79073.known	chr6	-	3076	20	FSM	ENSMUSG00000038429.11	ENSMUST00000122110.8	3076	20	0	0	0	0	multi-exon	FALSE	canonical	3	759	junction_16	54.5472424788812	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAGTACGGGGGCTGAC	7905	False	NA	-27	True	AATACA	-9	NA	124806398	124792000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
transcript_79074.known	chr6	-	3213	20	FSM	ENSMUSG00000038429.11	ENSMUST00000047510.10	3213	20	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_5	195.368477767687	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTTCAGTTCTTTGGGG	7856	False	NA	-8	True	AATAAA	-15	NA	124806447	124791981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795437_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
transcript_79082.known	chr6	+	1917	5	FSM	ENSMUSG00000023505.14	ENSMUST00000134637.8	1917	5	0	0	0	0	multi-exon	FALSE	canonical	3	695	junction_1	91.4969261778777	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGATTCATGATCTTTCCC	1362	False	NA	NA	False	CATAAA	-25	NA	124807197	124810495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_124807237_124807465_124807614_124808324_124809403_124809528_124809633_124809947
transcript_79083.known	chr6	+	785	5	FSM	ENSMUSG00000023505.14	ENSMUST00000131847.8	785	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	450.628103318024	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCAAACAGCAAGGTTCT	1344	False	NA	NA	False	NA	NA	NA	124807179	124809548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_124807237_124807326_124807614_124808324_124808452_124809108_124809403_124809528
transcript_79084.known	chr6	-	2850	15	FSM	ENSMUSG00000023191.10	ENSMUST00000023958.10	2850	15	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_14	4.42396073348629	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGGTCTGCTCTATCCC	5483	False	NA	NA	False	AATAAA	-27	NA	124834715	124818051	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_124818803_124819034_124819176_124821978_124822055_124822164_124822283_124822470_124822622_124822904_124823007_124827588_124827714_124827880_124827949_124828041_124828095_124830013_124830104_124831273_124831411_124831810_124831943_124832043_124832240_124832906_124833060_124834158
transcript_79086.nic	chr6	-	1435	6	ISM	ENSMUSG00000023191.10	ENSMUST00000023958.10	2850	15	11613	0	-3528	0	3prime_fragment	FALSE	canonical	3	8	junction_4	4.22374241638857	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGGTCTGCTCTATCCC	6370	False	NA	NA	False	AATAAA	-27	NA	124823102	124818051	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_124818803_124819034_124819176_124821978_124822055_124822164_124822283_124822470_124822622_124822904
transcript_79088.known	chr6	-	2676	5	FSM	ENSMUSG00000038390.12	ENSMUST00000046893.10	2676	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	3.56195171219375	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGATGTTCAGCGTTTGC	NA	False	NA	0	True	ATTAAA	-21	NA	124840880	124835406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_124836184_124836454_124836613_124836985_124837176_124837781_124839086_124840633
transcript_79091.known	chr6	-	2001	8	FSM	ENSMUSG00000030124.3	ENSMUST00000032217.2	2001	8	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_5	4.83186700722507	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAAGCTGGAGTCTGTCT	NA	False	NA	NA	False	AATAAA	-18	NA	124888668	124881323	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_124881564_124881800_124881932_124882218_124882456_124885339_124885616_124886188_124886453_124887066_124887360_124887726_124887875_124888256
transcript_79092.nic	chr6	-	1310	6	NIC	ENSMUSG00000030124.3	novel	2001	8	NA	NA	-54	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	4.4988887516808	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAAGCTGGAGTCTGTCT	1136	False	NA	NA	False	AATAAA	-18	NA	124887068	124881323	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_124881564_124881800_124881932_124882218_124882456_124885339_124885616_124886188_124886453_124886906
transcript_79093.nic	chr6	-	572	2	ISM	ENSMUSG00000030124.3	ENSMUST00000032217.2	2001	8	6536	0	4882	0	3prime_fragment	FALSE	canonical	3	14	junction_1	0	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAAGCTGGAGTCTGTCT	6072	False	NA	NA	False	AATAAA	-18	NA	124882132	124881323	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_124881564_124881800
transcript_79094.nic	chr6	-	1048	5	NIC	ENSMUSG00000030122.13	novel	1149	5	NA	NA	-116	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	272.08764672436	718	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGTCTCCTGCTTTCCCGC	NA	False	NA	-6	True	AATAAA	-26	NA	124892608	124890643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_124891196_124891370_124891430_124891597_124891677_124891880_124891953_124892322
transcript_79095.nnic	chr6	-	904	5	NNC	ENSMUSG00000030122.13	novel	1149	5	NA	NA	-84	0	at_least_one_novel_splicesite	FALSE	canonical	2	16	junction_4	274.15232991897	701	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGTCTCCTGCTTTCCCGC	NA	False	NA	-6	True	AATAAA	-26	NA	124892576	124890643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_124891196_124891370_124891430_124891597_124891677_124891880_124891953_124892434
transcript_79096.nnic	chr6	-	834	5	NNC	ENSMUSG00000030122.13	novel	1149	5	NA	NA	-86	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_4	271.262211706681	693	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGTCTCCTGCTTTCCCGC	NA	False	NA	-6	True	AATAAA	-26	NA	124892578	124890643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_124891196_124891370_124891430_124891597_124891677_124891880_124891953_124892506
transcript_79098.known	chr6	-	1149	5	FSM	ENSMUSG00000030122.13	ENSMUST00000032216.7	1149	5	0	0	0	0	multi-exon	FALSE	canonical	3	521	junction_3	90.7837402842601	750	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGTCTCCTGCTTTCCCGC	NA	False	NA	-6	True	AATAAA	-26	NA	124894909	124890643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_124891196_124891370_124891430_124891597_124891677_124891880_124891953_124894522
transcript_79099.known	chr6	-	744	5	FSM	ENSMUSG00000030122.13	ENSMUST00000204671.3	744	5	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_4	276.631975736718	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGGTTGGGGCCAAGCCC	8034	False	NA	-44	True	NA	NA	NA	124897066	124890726	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_124891196_124891370_124891430_124891597_124891677_124891880_124891953_124897001
transcript_791.known	chr1	+	2049	14	FSM	ENSMUSG00000033793.13	ENSMUST00000044369.13	2049	14	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_7	59.3277926628703	707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGGTGATGATGAGAAGT	NA	False	NA	98	True	AATAAA	-37	NA	5153302	5232752	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_5153502_5154639_5154787_5159231_5159335_5163585_5163676_5165837_5165952_5168251_5168357_5171292_5171347_5187612_5187711_5194499_5194693_5203306_5203486_5206034_5206161_5213972_5214075_5220170_5220285_5232327
transcript_7910.nnic	chr10	+	499	3	NNC	ENSMUSG00000001436.16	novel	356	3	NA	NA	-26	-2621	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	55	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGCAGCCGGTAATGTCAT	NA	False	NA	NA	False	AATAAA	-17	NA	76869019	76875060	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_76869182_76874183_76874414_76874953
transcript_79102.known	chr6	+	991	2	FSM	ENSMUSG00000055818.3	ENSMUST00000069553.3	991	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCACGAGTTTGGGGTTTC	NA	False	NA	NA	False	NA	NA	NA	124893825	124902807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_124894146_124902136
transcript_7911.nnic	chr10	+	600	3	NNC	ENSMUSG00000001436.16	novel	356	3	NA	NA	-26	-289	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	55	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGTGTAAGTCAGAAAGCC	NA	False	NA	NA	False	NA	NA	NA	76869019	76877392	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_76869182_76874183_76874414_76877184
transcript_79128.known	chr6	+	1475	9	FSM	ENSMUSG00000030120.15	ENSMUST00000180095.4	1475	9	0	0	0	0	multi-exon	FALSE	canonical	3	3449	junction_8	252.103029533562	9981	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGATTCTGGCTGTACTT	NA	False	NA	27	True	AATAAA	-17	NA	124908394	124913108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_124908550_124909061_124909140_124909373_124909501_124909739_124909776_124910916_124910971_124911253_124911383_124911548_124911709_124912195_124912409_124912585
transcript_79129.known	chr6	+	1451	9	FSM	ENSMUSG00000030120.15	ENSMUST00000032214.14	1451	9	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_8	1260.71298651795	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGATTCTGGCTGTACT	NA	False	NA	26	True	AATAAA	-16	NA	124908438	124913107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_124908550_124909061_124909140_124909373_124909501_124909739_124909776_124910916_124910971_124911253_124911383_124911548_124911709_124912195_124912409_124912564
transcript_79146.known	chr6	-	1328	8	FSM	ENSMUSG00000030127.16	ENSMUST00000112439.9	1328	8	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_1	503.213915644191	1177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTATGTATGCCAGGAGAT	NA	False	NA	-16	True	ATTAAA	-13	NA	124942501	124935375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_124935736_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
transcript_7915.known	chr10	+	2309	6	FSM	ENSMUSG00000001436.16	ENSMUST00000144234.8	2309	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	43.968170305347	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTGTTGTGAGACACT	NA	False	NA	17	True	ATTAAA	-19	NA	76868517	76886266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_76868615_76874183_76874414_76877649_76878404_76878615_76878809_76880594_76880737_76885373
transcript_7916.known	chr10	+	2290	9	FSM	ENSMUSG00000020260.10	ENSMUST00000020493.9	2290	9	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_5	28.5938695352693	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCAGTCCTAGAAATGGT	NA	False	NA	16	True	AATAAA	-17	NA	77095051	77105409	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_77095288_77096407_77096659_77098270_77098416_77099098_77099210_77100789_77100857_77101669_77101796_77102746_77102928_77103017_77103142_77104360
transcript_79160.nic	chr6	-	1821	8	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	22	0	combination_of_known_junctions	FALSE	canonical	3	167	junction_7	583.751379843669	657	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	-9	True	AATAAA	-26	NA	124942349	124935778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942181
transcript_79161.known	chr6	-	1817	8	FSM	ENSMUSG00000030127.16	ENSMUST00000032220.15	1817	8	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_7	625.057254520393	479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	-9	True	AATAAA	-26	NA	124942411	124935778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942247
transcript_79163.nic	chr6	-	1839	8	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	-49	0	combination_of_known_junctions	FALSE	canonical	3	1123	junction_1	272.823034517369	2035	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	-9	True	AATAAA	-26	NA	124942550	124935778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
transcript_79173.nic	chr6	-	1777	8	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	-49	-62	combination_of_known_junctions	FALSE	canonical	3	1123	junction_1	272.823034517369	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGGTCTATATATATTGACA	NA	False	NA	-17	True	NA	NA	NA	124942550	124935840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
transcript_79191.known	chr6	-	795	7	FSM	ENSMUSG00000030127.16	ENSMUST00000129976.8	795	7	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_6	612.067443633098	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGCAGCCACCTCCCAGG	NA	False	NA	NA	False	ATTAAA	-18	NA	124942253	124936869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942181
transcript_79194.nic	chr6	-	2000	7	ISM	ENSMUSG00000030127.16	ENSMUST00000112439.9	1328	8	-49	403	-49	0	5prime_fragment	FALSE	canonical	3	1332	junction_6	190.502333027417	451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	-9	True	AATAAA	-26	NA	124942550	124935778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
transcript_792.known	chr1	+	1811	13	FSM	ENSMUSG00000033793.13	ENSMUST00000192698.3	1811	13	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_6	140.296783640966	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATATAATTAAAGGATTCT	NA	False	NA	-12	True	NA	NA	NA	5153376	5232642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_5153502_5154639_5154787_5159231_5159335_5163585_5163676_5165837_5165952_5168251_5168357_5187612_5187711_5194499_5194693_5203306_5203486_5206034_5206161_5213972_5214075_5220170_5220285_5232327
transcript_7922.nic	chr10	+	507	2	ISM	ENSMUSG00000020260.10	ENSMUST00000020493.9	2290	9	-42	8773	-42	-6164	5prime_fragment	FALSE	canonical	3	179	junction_1	0	1255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTATGAGCAGTTCATTGC	NA	False	NA	7	True	AATAAA	-16	NA	77095009	77096636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_77095288_77096407
transcript_79222.known	chr6	-	486	2	FSM	ENSMUSG00000030127.16	ENSMUST00000149346.2	486	2	0	0	0	0	multi-exon	FALSE	canonical	3	1332	junction_1	0	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGGGTCTGTAAACTTA	NA	False	NA	NA	False	AATAAA	-33	NA	124942475	124941516	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_124941892_124942364
transcript_79224.known	chr6	+	2250	6	FSM	ENSMUSG00000030329.12	ENSMUST00000032479.11	2250	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	10.6094297678999	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTAGTTGCCTGTTTTGCCT	8030	False	NA	16	True	AATAAA	-16	NA	124973656	124980059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_124973903_124975880_124975941_124976197_124976704_124977616_124977699_124978389_124978612_124978925
transcript_79225.known	chr6	+	2053	6	FSM	ENSMUSG00000030329.12	ENSMUST00000162170.8	2053	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	17.7245592328836	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTAGTTGCCTGTTTTGCCT	9773	False	NA	16	True	AATAAA	-16	NA	124975399	124980059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_124975449_124975880_124975941_124976197_124976704_124977616_124977699_124978389_124978612_124978925
transcript_79226.known	chr6	+	1116	6	FSM	ENSMUSG00000030329.12	ENSMUST00000160704.8	1116	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	17.3505043154371	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCCAAGCGTTTGTCCTC	9946	False	NA	NA	False	NA	NA	NA	124975572	124979106	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_124975638_124975880_124975941_124976197_124976704_124977616_124977699_124978389_124978612_124978925
transcript_79227.nnic	chr6	+	2049	6	NNC	ENSMUSG00000030329.12	novel	207	3	NA	NA	126	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	15.499677415998	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTAGTTGCCTGTTTTGCCT	NA	False	NA	16	True	AATAAA	-16	NA	124975727	124980059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_124975773_124975880_124975941_124976197_124976704_124977616_124977699_124978389_124978612_124978925
transcript_7923.known	chr10	-	708	2	FSM	ENSMUSG00000078444.4	ENSMUST00000105408.4	708	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAAAGTTCAGGAG	NA	False	NA	NA	False	NA	NA	NA	77095057	77093609	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_77093821_77094560
transcript_79234.known	chr6	+	1629	8	FSM	ENSMUSG00000030330.16	ENSMUST00000032480.14	1629	8	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_4	19.3527933964298	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTGTGTGCGGTGATAG	7107	False	NA	6	True	AATAAA	-16	NA	125016798	125026227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024289_125024444_125024551_125024755_125024904_125025138_125025201_125025330
transcript_79235.known	chr6	+	1487	8	FSM	ENSMUSG00000030330.16	ENSMUST00000112417.9	1487	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	61.5119036099053	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTGCGGTGATAGT	7132	False	NA	7	True	AATAAA	-17	NA	125016823	125026228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024280_125024444_125024551_125024864_125024904_125025138_125025201_125025330
transcript_79236.known	chr6	+	1883	10	FSM	ENSMUSG00000072770.10	ENSMUST00000088294.12	1883	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	45.7669890199324	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCACGTGCTCTGCTTAGT	NA	False	NA	NA	False	AATAAA	-14	NA	125026921	125040230	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_125027016_125027396_125027613_125027809_125027905_125028205_125028324_125030452_125030916_125031635_125031769_125037772_125037953_125038048_125038217_125039398_125039483_125039898
transcript_79237.known	chr6	+	584	4	FSM	ENSMUSG00000072770.10	ENSMUST00000032481.8	584	4	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_3	54.0514158515349	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCATTTTGGAGAGTATT	NA	False	NA	NA	False	NA	NA	NA	125026929	125028510	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_125027016_125027396_125027613_125027809_125027905_125028323
transcript_79238.known	chr6	+	1393	2	FSM	ENSMUSG00000067714.14	ENSMUST00000088292.7	1393	2	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGACGCAGTCTAAGTGAA	5038	False	NA	NA	False	NA	NA	NA	125044882	125059435	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_125044940_125058099
transcript_79240.nic	chr6	+	1420	8	ISM	ENSMUSG00000063870.13	ENSMUST00000112390.8	6537	39	-179	28293	2	1778	5prime_fragment	FALSE	canonical	3	54	junction_3	59.4004054133076	78	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTTTCTTTTCTGTACT	1610	False	NA	NA	False	AAAAAG	-11	NA	125072945	125079261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_125073224_125074049_125074229_125077430_125077553_125077740_125077957_125078180_125078300_125078415_125078658_125078844_125078973_125079125
transcript_79241.nic	chr6	+	1399	8	ISM	ENSMUSG00000063870.13	ENSMUST00000112392.8	6652	39	2	28287	2	1778	5prime_fragment	FALSE	canonical	3	200	junction_3	15.8384703446117	102	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTTTCTTTTCTGTACT	1610	False	NA	NA	False	AAAAAG	-11	NA	125072945	125079261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_125073224_125074049_125074229_125077430_125077553_125077761_125077957_125078180_125078300_125078415_125078658_125078844_125078973_125079125
transcript_79243.nic	chr6	+	715	4	ISM	ENSMUSG00000063870.13	ENSMUST00000112390.8	6537	39	-179	29678	2	393	5prime_fragment	FALSE	canonical	3	54	junction_3	70.258253765819	105	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCGGACCTAAGAAAGAGAAG	1610	False	NA	NA	False	NA	NA	NA	125072945	125077876	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_125073224_125074049_125074229_125077430_125077553_125077740
transcript_79244.nic	chr6	+	690	4	ISM	ENSMUSG00000063870.13	ENSMUST00000112392.8	6652	39	2	29676	2	389	5prime_fragment	FALSE	canonical	3	200	junction_3	2.16024689946929	149	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCTCGGACCTAAGAAAGA	1610	False	NA	NA	False	NA	NA	NA	125072945	125077872	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_125073224_125074049_125074229_125077430_125077553_125077761
transcript_79245.nic	chr6	+	510	3	ISM	ENSMUSG00000063870.13	ENSMUST00000112392.8	6652	39	2	30065	2	0	5prime_fragment	FALSE	canonical	3	201	junction_1	2	56	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAGAAGAAAAAGCCTAA	1610	False	NA	NA	False	NA	NA	NA	125072945	125077483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_125073224_125074049_125074229_125077430
transcript_79253.known	chr6	+	2597	16	FSM	ENSMUSG00000038279.11	ENSMUST00000044200.11	2597	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	206.283558885983	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGTTGTGTTTTTTGA	5437	False	NA	25	True	AATATA	-17	NA	125108871	125121716	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
transcript_79256.nnic	chr6	+	2645	16	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	267.552229584348	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGTTGTGTTTTTTGA	5415	False	NA	25	True	AATATA	-17	NA	125108849	125121716	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_125108993_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
transcript_79258.nnic	chr6	+	2396	15	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	-79	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	284.942538066888	98	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGTTGTGTTTTTTGA	5358	False	NA	25	True	AATATA	-17	NA	125108792	125121716	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116801_125117783_125117843_125117998_125118122_125118236_125118466_125120963
transcript_79285.known	chr6	+	3056	8	FSM	ENSMUSG00000038271.18	ENSMUST00000141230.8	3056	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	12.7711409363583	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTTGATTGAGCCTGCT	8252	False	NA	5	True	AATAAA	-12	NA	125122228	125138739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_125122993_125126551_125126613_125126703_125126800_125128347_125128489_125129576_125129735_125130004_125130466_125136024_125136156_125137495
transcript_79288.known	chr6	-	1420	7	FSM	ENSMUSG00000057666.19	ENSMUST00000118875.8	1420	7	0	0	0	0	multi-exon	FALSE	canonical	3	6089	junction_1	1931.60920967179	773	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	False	NA	-16	True	AATAAA	-14	NA	125142736	125138816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142233_125142275_125142514
transcript_79293.known	chr6	+	2840	9	FSM	ENSMUSG00000038271.18	ENSMUST00000119527.8	2840	9	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	15.028618532653	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTGAGCCTGCTTCACCT	8227	False	NA	11	True	AATAAA	-18	NA	125122203	125138745	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_125122993_125126551_125126613_125126703_125126800_125128347_125128489_125129576_125129735_125130004_125130126_125130372_125130466_125136024_125136156_125137495
transcript_79294.known	chr6	-	4629	32	FSM	ENSMUSG00000038252.14	ENSMUST00000043848.11	4629	32	0	0	0	0	multi-exon	TRUE	canonical	3	436	junction_21	78.9640126675822	197	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTGTCCTGGCTGGTC	3395	False	NA	-9	True	AATAAA	-20	NA	125168664	125144969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
transcript_79295.known	chr6	+	3427	3	FSM	ENSMUSG00000030335.7	ENSMUST00000032485.7	3427	3	0	0	0	0	multi-exon	FALSE	canonical	3	716	junction_1	10	2930	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTCTGGGTTTTCTTCT	NA	False	NA	NA	False	ACTAAA	-15	NA	125169127	125173232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_125169397_125169478_125169590_125170185
transcript_79299.known	chr6	+	855	3	FSM	ENSMUSG00000030335.7	ENSMUST00000136804.2	855	3	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	333	719	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTCTGCCTCGTTCCTAAG	NA	False	NA	49	True	NA	NA	NA	125168763	125170521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_125169172_125169478_125169590_125170185
transcript_793.known	chr1	+	2510	2	FSM	ENSMUSG00000033793.13	ENSMUST00000194978.6	2510	2	0	0	0	0	multi-exon	FALSE	canonical	3	533	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAAGAATGTTCAT	NA	False	NA	NA	False	NA	NA	NA	5153354	5157002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_5153502_5154639
transcript_7930.known	chr10	-	788	6	FSM	ENSMUSG00000032977.10	ENSMUST00000218414.2	788	6	0	0	0	0	multi-exon	FALSE	canonical	1	11	junction_5	97.4117036089607	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATCTGTGGCTTTACTTC	NA	False	NA	-3	True	AATAAA	-35	NA	77351406	77323998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_77324308_77325831_77325901_77333196_77333348_77339679_77339749_77350139_77350249_77351325
transcript_79300.known	chr6	-	2352	7	FSM	ENSMUSG00000038213.8	ENSMUST00000043422.8	2352	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	4.61880215351701	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGCACTTTCTTCTCTCTC	8513	False	NA	NA	False	AATAAA	-17	NA	125208823	125200895	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_125201673_125201826_125201914_125203453_125203760_125205025_125205365_125207107_125207381_125207517_125207761_125208496
transcript_79303.known	chr6	+	1400	5	FSM	ENSMUSG00000030337.17	ENSMUST00000063588.11	1400	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.6393596310755	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACATATATATATATGTCC	350	False	NA	NA	False	NA	NA	NA	125192543	125218212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_125192691_125195536_125195664_125195873_125196033_125196548_125196601_125217297
transcript_79304.known	chr6	+	3011	4	FSM	ENSMUSG00000030337.17	ENSMUST00000100942.9	3011	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0.471404520791032	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACATTGACTTGATTGTT	350	False	NA	NA	False	AATACA	-11	NA	125192543	125199126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_125192691_125195536_125195664_125195873_125196033_125196548
transcript_79308.known	chr6	-	1509	5	FSM	ENSMUSG00000067702.6	ENSMUST00000088246.6	1509	5	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_2	43.4453679924569	4736	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCATTTCCTCTCTAGTGT	3461	False	NA	-8	True	AATAAA	-28	NA	125263005	125255236	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_125255618_125257932_125258614_125259315_125259465_125259718_125259942_125262930
transcript_79310.known	chr6	-	2107	10	FSM	ENSMUSG00000030339.8	ENSMUST00000032489.8	2107	10	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	2.62936879248872	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTGGGTTTTATGTGG	NA	False	NA	0	True	AATAAA	-21	NA	125290848	125283533	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_125284435_125284892_125285110_125286156_125286183_125286421_125286530_125289005_125289086_125289232_125289330_125289714_125289874_125289956_125290083_125290352_125290450_125290552
transcript_79311.known	chr6	+	2156	10	FSM	ENSMUSG00000030341.18	ENSMUST00000032491.15	2156	10	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_1	4.54062594260057	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCTGACCCTGGAAAGAGTG	3776	False	NA	15	True	AATACA	-20	NA	125326685	125339447	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_125327026_125333787_125333942_125334275_125334405_125334683_125334834_125335016_125335096_125337459_125337537_125337672_125337787_125338054_125338084_125338261_125338548_125338649
transcript_79312.nnic	chr6	-	1097	2	Antisense	novelGene_ENSMUSG00000030341.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	0	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTATAGTCAAGAGTAAAAA	5464	False	NA	NA	False	AATAAA	-13	NA	125338936	125336641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr6_-_125337460_125338657
transcript_79314.nnic	chr6	-	987	2	Antisense	novelGene_ENSMUSG00000030341.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	0	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGTCGAAGGGCTGAGGGTA	5464	False	NA	NA	False	AATAAA	-7	NA	125338936	125336751	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr6_-_125337460_125338657
transcript_79317.known	chr6	-	3299	17	FSM	ENSMUSG00000038167.7	ENSMUST00000042647.7	3299	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	3.59198326137525	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAACATGGTTGTTTGGTG	NA	False	NA	NA	False	TATAAA	-8	NA	125357756	125339622	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_125339831_125340004_125340683_125341546_125341699_125347343_125347460_125347544_125347678_125349020_125349141_125349440_125349579_125349775_125349926_125350069_125350181_125351491_125351642_125351936_125351988_125352205_125352302_125352686_125352852_125354344_125354501_125355664_125355874_125356717_125356940_125357312
transcript_79318.nic	chr6	-	1354	5	ISM	ENSMUSG00000038167.7	ENSMUST00000042647.7	3299	17	10012	0	10012	0	3prime_fragment	FALSE	canonical	2	4	junction_4	2.48746859276655	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAACATGGTTGTTTGGTG	3667	False	NA	NA	False	TATAAA	-8	NA	125347744	125339622	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_125339831_125340004_125340683_125341546_125341699_125347343_125347460_125347544
transcript_7933.known	chr10	-	2394	6	FSM	ENSMUSG00000032977.10	ENSMUST00000045454.9	2394	6	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_3	11.7881296226331	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGCAGTCCCCTGGCTTTC	NA	False	NA	-7	True	AATAAA	-26	NA	77351619	77322494	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_77324308_77325831_77325901_77333196_77333348_77339679_77339749_77350139_77350249_77351436
transcript_79334.known	chr6	+	782	4	FSM	ENSMUSG00000101191.7	ENSMUST00000187542.7	782	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1.4142135623731	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCTCAAAAAAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	125458325	125461641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_125458438_125459526_125459666_125460403_125460533_125461239
transcript_79336.known	chr6	-	1228	8	FSM	ENSMUSG00000030342.9	ENSMUST00000032492.9	1228	8	0	0	0	0	multi-exon	FALSE	canonical	3	5197	junction_4	437.363109779412	19989	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGCTGATTGCTGGTA	9966	False	NA	-10	True	AATAAA	-15	NA	125471754	125437228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
transcript_79337.nnic	chr6	+	1133	5	NNC	ENSMUSG00000001930.18	novel	1807	11	NA	NA	-15406	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	10.6154368727811	53	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCGGGAAGCCCTTATTG	NA	False	NA	NA	False	NA	NA	NA	125565106	125569137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_125565247_125565379_125565597_125567141_125567265_125568112_125568225_125568596
transcript_79339.nnic	chr6	+	1183	5	NNC	ENSMUSG00000001930.18	novel	1807	11	NA	NA	-15391	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	10.9772492000501	55	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCGGGAAGCCCTTATTG	NA	False	NA	NA	False	NA	NA	NA	125565121	125569137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_125565312_125565379_125565597_125567141_125567265_125568112_125568225_125568596
transcript_7934.known	chr10	+	2294	6	FSM	ENSMUSG00000009291.14	ENSMUST00000009435.12	2294	6	0	0	0	0	multi-exon	FALSE	canonical	3	637	junction_4	46.3188946327522	592	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGATTTCTTTGTTTTGT	1291	False	NA	32	True	AATAAA	-15	NA	77417553	77434566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_77417762_77423084_77423138_77425467_77425577_77428679_77428852_77429697_77429745_77432861
transcript_79344.known	chr6	-	1445	11	FSM	ENSMUSG00000000399.11	ENSMUST00000205002.3	1445	11	0	0	0	0	multi-exon	FALSE	canonical	3	1115	junction_7	83.3223259396904	6272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTGATCTGAATTCACTC	NA	False	NA	NA	False	TATAAA	-19	NA	126826088	126798683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_126799153_126801898_126801966_126804502_126804599_126809434_126809512_126811391_126811460_126813181_126813285_126817460_126817603_126819083_126819176_126821270_126821369_126821753_126821925_126826026
transcript_79345.known	chr6	-	919	3	FSM	ENSMUSG00000000399.11	ENSMUST00000200890.2	919	3	0	0	0	0	multi-exon	FALSE	canonical	3	1175	junction_2	32	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGAGTTCCAGGACAGCC	NA	False	NA	NA	False	NA	NA	NA	126826099	126820693	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_126821369_126821753_126821925_126826026
transcript_79346.nic	chr6	-	1134	5	ISM	ENSMUSG00000030345.17	ENSMUST00000078521.7	2252	15	36378	0	-77	0	3prime_fragment	FALSE	canonical	2	4	junction_4	3.57071421427143	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGTGGCTGTCAATCTATG	NA	False	NA	-12	True	AATAAA	-17	NA	126862424	126852982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_126853514_126854122_126854302_126857187_126857318_126860989_126861051_126862191
transcript_79347.known	chr6	-	823	4	FSM	ENSMUSG00000030345.17	ENSMUST00000171945.8	823	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	5.8878405775519	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCATGGTGAGTTAGCA	NA	False	NA	NA	False	CATAAA	-25	NA	126862347	126853155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_126853514_126854122_126854302_126857187_126857318_126862191
transcript_79351.known	chr6	-	2233	9	FSM	ENSMUSG00000030346.17	ENSMUST00000112220.8	2233	9	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_4	57.8721651573535	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGGAGGGACTTGGGTT	5265	False	NA	NA	False	TATAAA	-11	NA	126916550	126900012	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_126901304_126901880_126902031_126903321_126903481_126904500_126904651_126905103_126905191_126906955_126907066_126911676_126911813_126912915_126912972_126916456
transcript_79352.known	chr6	-	1871	9	FSM	ENSMUSG00000030346.17	ENSMUST00000112221.8	1871	9	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_4	48.7748334184751	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCATGCCTCGCCTAGTT	5265	False	NA	-5	True	AATAAA	-21	NA	126916550	126900377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_126901304_126901880_126902031_126903321_126903481_126904500_126904654_126905103_126905191_126906955_126907066_126911676_126911813_126912915_126912972_126916456
transcript_79357.nnic	chr6	-	1967	9	NNC	ENSMUSG00000030346.17	novel	1871	9	NA	NA	-44	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	85.1909619619358	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCATGCCTCGCCTAGTT	5221	False	NA	-5	True	AATAAA	-21	NA	126916594	126900377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_126901304_126901880_126902083_126903321_126903481_126904500_126904654_126905103_126905191_126906955_126907066_126911676_126911813_126912915_126912972_126916456
transcript_7936.known	chr10	+	2031	6	FSM	ENSMUSG00000009293.18	ENSMUST00000174510.8	2031	6	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_5	14.0427917452336	904	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTGTTGTGTGGTGCTCA	90	False	NA	5	True	AATAAA	-18	NA	77458108	77481827	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_77458251_77466559_77466596_77466682_77466729_77477293_77477413_77479302_77479444_77480280
transcript_79370.known	chr6	+	2501	14	FSM	ENSMUSG00000030347.7	ENSMUST00000032497.7	2501	14	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_10	14.682034265643	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACCGCCATCTCACCTTC	NA	False	NA	NA	False	NA	NA	NA	126916928	126952930	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_126916990_126919274_126919470_126921754_126921901_126923439_126923622_126927020_126927121_126927237_126927360_126931697_126931805_126932097_126932296_126932811_126932941_126938928_126939004_126943842_126944046_126950518_126950577_126951449_126951518_126952073
transcript_79380.known	chr6	+	420	2	FSM	ENSMUSG00000030347.7	ENSMUST00000201603.2	420	2	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTTAATTCAAAGCCAGCA	NA	False	NA	NA	False	NA	NA	NA	126916933	126919638	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_126916990_126919274
transcript_79381.known	chr6	-	855	5	FSM	ENSMUSG00000038028.10	ENSMUST00000200988.2	855	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	476.733350522071	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGAGTGTGGAGCCCGT	NA	False	NA	NA	False	NA	NA	NA	127086520	127064843	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_127065266_127066155_127066267_127068146_127068225_127069583_127069706_127086398
transcript_79382.known	chr6	-	3651	6	FSM	ENSMUSG00000038028.10	ENSMUST00000039913.9	3651	6	0	0	0	0	multi-exon	FALSE	canonical	3	974	junction_4	62.3903838744401	2189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTAGGTCTGTTCAGTGT	NA	False	NA	NA	False	AATAAA	-22	NA	127086513	127062078	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_127065266_127066155_127066267_127068146_127068225_127069583_127069706_127078811_127078850_127086398
transcript_79383.known	chr6	+	1466	3	FSM	ENSMUSG00000097525.3	ENSMUST00000180653.3	1466	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAATAAAAAGAAATATC	4353	False	NA	NA	False	NA	NA	NA	127077259	127087430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_127077376_127085351_127085535_127086263
transcript_79384.known	chr6	-	6330	5	FSM	ENSMUSG00000000184.13	ENSMUST00000000188.12	6330	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.6393596310755	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTGTCACTAACTT	2272	False	NA	2	True	AATAAA	-18	NA	127128023	127102124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_127107451_127116065_127116215_127122985_127123146_127125626_127125843_127127544
transcript_79387.known	chr6	+	3746	9	FSM	ENSMUSG00000037997.13	ENSMUST00000039680.7	3746	9	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_4	10.4403065089106	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTGTGCTTCTGGTTTCT	NA	False	NA	33	True	ATTAAA	-38	NA	127430685	127471224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_127430786_127444994_127445116_127447664_127447794_127448510_127448632_127451198_127451275_127454806_127454880_127454961_127455093_127466888_127467041_127468381
transcript_7939.known	chr10	+	430	5	FSM	ENSMUSG00000009293.18	ENSMUST00000174546.8	430	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	130.407773924717	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTACCCCTGTGCACACTG	138	False	NA	NA	False	GGGGCT	-5	NA	77458156	77480393	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_77458251_77466559_77466596_77466682_77466729_77479302_77479444_77480280
transcript_79396.known	chr6	+	1725	7	FSM	ENSMUSG00000037997.13	ENSMUST00000112193.8	1725	7	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_4	10.0443461155462	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTGATTTCTGGTATTT	NA	False	NA	NA	False	AATAAA	-13	NA	127430637	127456018	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_127430786_127444994_127445116_127447664_127447794_127448510_127448632_127451198_127451275_127454806_127454880_127454961
transcript_79401.known	chr6	+	660	6	FSM	ENSMUSG00000037997.13	ENSMUST00000144115.8	660	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	17.8101094887145	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATTCAAAGGATCCAAAACT	NA	False	NA	NA	False	ATTAAA	-3	NA	127430610	127455047	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_127430786_127444994_127445116_127447664_127447794_127451198_127451275_127454806_127454880_127454961
transcript_79405.known	chr6	-	2724	10	FSM	ENSMUSG00000030350.9	ENSMUST00000032500.9	2724	10	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_7	3.18948890986829	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATGAGTACCTCTTTCTT	NA	False	NA	2	True	AATAAA	-17	NA	127746435	127665973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_127666872_127667572_127667695_127674647_127674799_127680839_127680956_127688104_127688193_127688744_127688888_127703487_127703552_127706372_127706529_127709597_127709784_127745635
transcript_79406.known	chr6	-	1405	9	FSM	ENSMUSG00000030352.16	ENSMUST00000032503.12	1405	9	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_5	10.9971587239614	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTAGCTCTCTGATTTAT	6166	False	NA	NA	False	NA	NA	NA	128120523	127940869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_127941463_127942200_127942285_127942661_127942794_127943344_127943447_127943691_127943767_127944043_127944236_128011128_128011209_128060344_128060445_128120476
transcript_79410.nnic	chr6	-	1526	4	NNC	ENSMUSG00000056771.8	novel	2346	2	NA	NA	-23	-1204	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.69967317119759	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACGATGATATTCCTTCC	NA	False	NA	NA	False	AATAAA	-21	NA	128177609	128165984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_128166683_128167505_128167762_128176569_128176675_128177142
transcript_79413.nnic	chr6	-	1058	4	NNC	ENSMUSG00000056771.8	novel	2346	2	NA	NA	-23	-1672	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.69967317119759	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTGGTGTCAGTGGCTC	NA	False	NA	NA	False	AAAAAG	-11	NA	128177609	128166452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_128166683_128167505_128167762_128176569_128176675_128177142
transcript_7942.known	chr10	+	1874	4	FSM	ENSMUSG00000020265.17	ENSMUST00000099538.6	1874	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	598.245397437837	1197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTTGGCCTATGTTAAAC	NA	False	NA	25	True	AGTAAA	-18	NA	77442404	77453256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_77442803_77445645_77445775_77449813_77449886_77451981
transcript_79425.nnic	chr6	-	2021	4	Fusion	ENSMUSG00000030353.16_ENSMUSG00000097979.3	novel	885	3	NA	NA	-13173	196	intron_retention	FALSE	non_canonical	0	0	junction_1	0	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAGGCGAAAGTGAAAT	9875	False	NA	NA	False	AATAAA	-28	NA	128290959	128178916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr6_-_128179362_128179445_128180304_128223283_128223340_128290297
transcript_79434.nnic	chr6	-	1737	3	NNC	ENSMUSG00000097979.3	novel	885	3	NA	NA	-110705	196	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAGGCGAAAGTGAAAT	9890	False	NA	NA	False	AATAAA	-28	NA	128290944	128178916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_128179362_128179445_128180092_128290298
transcript_79437.nnic	chr6	-	1896	3	NNC	ENSMUSG00000097979.3	novel	885	3	NA	NA	-110705	196	intron_retention	FALSE	non_canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAGGCGAAAGTGAAAT	9890	False	NA	NA	False	AATAAA	-28	NA	128290944	128178916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_128179362_128179445_128180251_128290298
transcript_79438.nnic	chr6	-	1919	3	NNC	ENSMUSG00000097979.3	novel	885	3	NA	NA	-110720	196	intron_retention	FALSE	non_canonical	0	0	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAGGCGAAAGTGAAAT	9875	False	NA	NA	False	AATAAA	-28	NA	128290959	128178916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_128179362_128179445_128180259_128290298
transcript_7944.known	chr10	+	404	4	FSM	ENSMUSG00000009293.18	ENSMUST00000172813.2	404	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	134.650164005346	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTGGCGGGATGACCGGG	128	False	NA	NA	False	NA	NA	NA	77458146	77480320	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_77458251_77477293_77477413_77479302_77479444_77480280
transcript_79445.nnic	chr6	-	2018	3	NNC	ENSMUSG00000097979.3	novel	885	3	NA	NA	-110715	196	intron_retention	FALSE	non_canonical	0	0	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAGGCGAAAGTGAAAT	9880	False	NA	NA	False	AATAAA	-28	NA	128290954	128178916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_128179362_128179445_128180353_128290288
transcript_79446.nnic	chr6	-	2006	3	NNC	ENSMUSG00000097979.3	novel	885	3	NA	NA	-110710	196	intron_retention	FALSE	non_canonical	0	0	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAGGCGAAAGTGAAAT	9885	False	NA	NA	False	AATAAA	-28	NA	128290949	128178916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_128179362_128179445_128180353_128290295
transcript_7945.known	chr10	+	1005	5	FSM	ENSMUSG00000020265.17	ENSMUST00000137841.9	1005	5	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_3	668.550858200033	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAGCTTTGTCAAACATA	NA	False	NA	5	True	ATTAAA	-20	NA	77442042	77452544	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_77442176_77445645_77445775_77449813_77449886_77451760_77451869_77451981
transcript_79450.known	chr6	-	1000	2	FSM	ENSMUSG00000097979.3	ENSMUST00000182339.2	1000	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGAAACCCTGGACCACCC	NA	False	NA	NA	False	NA	NA	NA	128180196	128179112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_128179362_128179445
transcript_79456.known	chr6	-	3076	12	FSM	ENSMUSG00000030353.16	ENSMUST00000006311.13	3076	12	0	0	0	0	multi-exon	TRUE	canonical	3	52	junction_4	17.0405447474327	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCGTGAGAACTTCAACTC	1357	False	NA	-7	True	NA	NA	NA	128277776	128204105	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_128205443_128205530_128205684_128207554_128207696_128219363_128219538_128220332_128220473_128223283_128223340_128223780_128223825_128224922_128225052_128228502_128228566_128228884_128228950_128247830_128248086_128277257
transcript_79459.known	chr6	-	1909	11	FSM	ENSMUSG00000030353.16	ENSMUST00000112157.4	1909	11	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_7	24.4991836598692	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGAGGAGCTAGTTTGGC	1357	False	NA	-5	True	AATAAA	-19	NA	128277776	128205143	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_128205443_128205530_128205684_128207554_128207696_128219363_128219538_128220332_128220473_128223283_128223340_128223780_128223825_128228502_128228566_128228884_128228950_128247830_128248086_128277257
transcript_79464.known	chr6	+	567	1	FSM	ENSMUSG00000053173.13	ENSMUST00000118863.2	567	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7486	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGGATCTTAACTGTTAA	NA	False	NA	NA	False	NA	NA	NA	128290319	128290886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_128290300_128290900
transcript_79466.known	chr6	-	3374	11	FSM	ENSMUSG00000001521.13	ENSMUST00000001562.9	3374	11	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_5	4.7169905660283	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCGCTTTCCCAGAATACC	7491	False	NA	-20	True	AATAAA	-18	NA	128332814	128298123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_128300176_128300960_128301133_128301942_128302042_128302839_128302955_128303734_128303848_128304502_128304701_128304918_128305041_128310795_128310973_128311400_128311561_128314696_128314749_128332700
transcript_79468.known	chr6	-	1053	2	FSM	ENSMUSG00000001521.13	ENSMUST00000157005.3	1053	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTGTTGTTTAATAAG	7517	False	NA	NA	False	CATAAA	-19	NA	128332788	128319203	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_128320169_128332700
transcript_79473.known	chr6	-	2015	4	FSM	ENSMUSG00000048668.17	ENSMUST00000112152.8	2015	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	145.265274584121	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGCCTGTCTCAGTGGTC	530	False	NA	NA	False	CATAAA	-34	NA	128339775	128333962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_128335157_128336068_128336318_128339020_128339148_128339330
transcript_79474.nic	chr6	-	1290	4	NIC	ENSMUSG00000048668.17	novel	2015	4	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_2	133.417473451652	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCCTCGTGCCCATCTA	424	False	NA	-7	True	AATAAA	-41	NA	128339881	128334322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_128335157_128336068_128336318_128339020_128339148_128339801
transcript_79478.known	chr6	-	1584	3	FSM	ENSMUSG00000048668.17	ENSMUST00000057421.15	1584	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	149.5	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCCTCGTGCCCATCTA	474	False	NA	-7	True	AATAAA	-41	NA	128339831	128334322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_128335157_128336068_128336318_128339330
transcript_79480.known	chr6	-	1108	3	FSM	ENSMUSG00000048668.17	ENSMUST00000112151.2	1108	3	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_2	100.5	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAATGCAGCCTCGTGCCC	474	False	NA	-12	True	AATAAA	-36	NA	128339831	128334327	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_128335157_128336068_128336318_128339801
transcript_79482.known	chr6	-	2320	12	FSM	ENSMUSG00000001518.13	ENSMUST00000001559.11	2320	12	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_3	19.6628609101919	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGCTCTCCAATCTGGAC	NA	False	NA	0	True	AATAAA	-24	NA	128401894	128386406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_128387381_128387455_128387630_128388527_128388646_128389661_128389754_128389919_128389974_128390065_128390164_128390487_128390637_128391107_128391248_128392858_128393028_128393219_128393262_128394579_128394676_128401680
transcript_79483.known	chr6	-	1394	11	FSM	ENSMUSG00000001518.13	ENSMUST00000203374.3	1394	11	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_10	80.3029264722027	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGCAGAACTGGGTTCTC	NA	False	NA	NA	False	NA	NA	NA	128401832	128387174	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_128387381_128387455_128387630_128388527_128388646_128389661_128389754_128389919_128389974_128390065_128390164_128390487_128390637_128391107_128391248_128392858_128393028_128393219_128393262_128401680
transcript_7949.known	chr10	+	2169	10	FSM	ENSMUSG00000069581.13	ENSMUST00000092368.10	2169	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.43938871112224	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAAAAAATACATGGATGG	NA	False	NA	NA	False	NA	NA	NA	77700456	77722855	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_77700717_77702113_77702205_77703505_77703663_77705396_77705529_77706156_77706384_77708927_77709115_77710718_77710949_77716895_77717084_77719274_77719377_77722260
transcript_79492.known	chr6	-	3191	10	FSM	ENSMUSG00000001518.13	ENSMUST00000142615.4	3191	10	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_1	20.4601389035025	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCAAGGCTCCATAGCAAG	NA	False	NA	-89	True	NA	NA	NA	128401881	128386495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_128388646_128389661_128389754_128389919_128389974_128390065_128390164_128390487_128390637_128391107_128391248_128392858_128393028_128393219_128393262_128394579_128394676_128401680
transcript_79498.nic	chr6	-	801	4	ISM	ENSMUSG00000001518.13	ENSMUST00000203026.2	655	6	-17	1975	0	15	5prime_fragment	FALSE	canonical	3	279	junction_3	2.49443825784929	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCATGACCTCTAAGAATA	NA	False	NA	NA	False	NA	NA	NA	128401893	128392577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_128393028_128393219_128393262_128394579_128394676_128401680
transcript_79499.nic	chr6	-	994	3	ISM	ENSMUSG00000001518.13	ENSMUST00000203853.3	724	7	-18	2607	0	16	5prime_fragment	FALSE	canonical	3	279	junction_2	3	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCATGACCTCTAAGAATAG	NA	False	NA	NA	False	NA	NA	NA	128401893	128392576	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_128393262_128394579_128394676_128401680
transcript_795.known	chr1	+	626	2	FSM	ENSMUSG00000102135.2	ENSMUST00000194605.2	626	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCATGCGTAGTGTAATA	NA	False	NA	NA	False	NA	NA	NA	6986782	6993812	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_6987220_6993623
transcript_79501.known	chr6	-	2296	2	FSM	ENSMUSG00000001518.13	ENSMUST00000133994.2	2296	2	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAATCA	NA	False	NA	NA	False	NA	NA	NA	128401893	128392592	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_128394676_128401680
transcript_79503.known	chr6	-	2217	10	FSM	ENSMUSG00000030357.11	ENSMUST00000032508.11	2217	10	0	0	0	0	multi-exon	FALSE	canonical	3	5250	junction_7	195.172162050601	4189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGTGTCAGGCAACCCT	9269	False	NA	-21	True	AATAAA	-16	NA	128415640	128407065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_128407844_128409384_128409625_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
transcript_79504.known	chr6	-	2678	9	FSM	ENSMUSG00000030357.11	ENSMUST00000139448.7	2678	9	0	0	0	0	multi-exon	FALSE	canonical	3	5250	junction_6	206.026697299161	608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTTGTGAGTCACAAGTT	9269	False	NA	NA	False	NA	NA	NA	128415640	128406697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_128407844_128409384_128409625_128410068_128410255_128410488_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
transcript_79506.nnic	chr6	-	842	7	NNC	ENSMUSG00000030359.15	novel	4681	36	NA	NA	-61	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_6	23.8799078725191	79	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGTTTTTTTTTCCTTTTT	NA	False	NA	5	True	AATAAA	-20	NA	128464879	128460529	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_128460690_128461826_128461869_128462520_128462624_128463080_128463150_128463855_128463947_128464365_128464497_128464633
transcript_79507.nic	chr6	-	695	7	NIC	ENSMUSG00000030359.15	novel	4681	36	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_6	23.8799078725191	103	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGTTTTTTTTTCCTTTTT	NA	False	NA	5	True	AATAAA	-20	NA	128464855	128460529	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_128460690_128461826_128461869_128462520_128462624_128463080_128463150_128463855_128463947_128464365_128464497_128464756
transcript_79508.nic	chr6	-	864	7	ISM	ENSMUSG00000030359.15	ENSMUST00000112132.8	4681	36	38572	0	-293	0	3prime_fragment	FALSE	canonical	3	30	junction_1	17.1464281994822	136	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGTTTTTTTTTCCTTTTT	NA	False	NA	5	True	AATAAA	-20	NA	128465111	128460529	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_128460690_128461826_128461869_128462520_128462624_128463080_128463150_128463855_128463947_128464365_128464497_128464843
transcript_7951.known	chr10	+	1818	7	FSM	ENSMUSG00000020284.17	ENSMUST00000105397.10	1818	7	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_4	1.5723301886761	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTCTGTGTCCCAGGCCC	NA	False	NA	12	True	AATAAA	-12	NA	77814357	77821268	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_77814616_77815586_77815606_77816334_77816382_77817417_77817648_77818703_77818876_77819349_77819426_77820252
transcript_79512.nnic	chr6	+	1456	5	NNC	ENSMUSG00000059659.8	novel	907	5	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	2.91547594742265	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAAATTGTTATTCACTT	NA	False	NA	NA	False	AATGAA	-14	NA	128415732	128480244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_128416351_128416477_128416660_128465853_128465987_128479128_128479327_128479919
transcript_79515.known	chr6	+	907	5	FSM	ENSMUSG00000059659.8	ENSMUST00000204081.2	907	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	4.26468052730799	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAAATTGTTATTCACTT	NA	False	NA	NA	False	AATGAA	-14	NA	128416301	128480244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_128416351_128416477_128416660_128465853_128466007_128479128_128479327_128479919
transcript_79530.known	chr6	-	483	1	FSM	ENSMUSG00000057370.6	ENSMUST00000081668.6	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTACACAAAGAAATAAAAT	5476	False	NA	NA	False	NA	NA	NA	128508363	128507880	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_128507900_128508400
transcript_79532.nnic	chr6	+	570	3	Antisense	novelGene_ENSMUSG00000079298.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTACTTTCTCTCTGTAT	NA	False	NA	NA	False	NA	NA	NA	128791417	128799518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr6_+_128791506_128797843_128798066_128799258
transcript_79534.known	chr6	+	2299	3	FSM	ENSMUSG00000087150.8	ENSMUST00000131176.8	2299	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1.5	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTATTTGTGTTGGCTTTTTG	9316	False	NA	NA	False	AATAAA	-15	NA	128969914	128985003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_128970070_128979208_128979314_128982964
transcript_79536.known	chr6	+	1820	4	FSM	ENSMUSG00000030161.9	ENSMUST00000032264.9	1820	4	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_2	5.71547606649408	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGGCCTCTTTCTTTTTC	NA	False	NA	34	True	AATAAA	-38	NA	129510122	129519309	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_129510500_129514453_129514533_129515532_129515652_129518064
transcript_79538.known	chr6	+	902	4	FSM	ENSMUSG00000030161.9	ENSMUST00000204487.3	902	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	57.521010654079	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGCCGGCTCTTTGGGCA	NA	False	NA	NA	False	AATACA	-11	NA	129510162	129518469	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_129510462_129514453_129514533_129515532_129515652_129518064
transcript_7954.known	chr10	-	2141	1	FSM	ENSMUSG00000020277.11	ENSMUST00000220304.2	2141	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GCAAAACAAAAAAACCAATT	NA	False	NA	NA	False	AAAAAG	-27	NA	77845570	77843429	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_77843400_77845600
transcript_79541.known	chr6	-	561	6	FSM	ENSMUSG00000030188.13	ENSMUST00000173198.8	561	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	222.978563992147	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTGGTACAAGACTTGAA	NA	False	NA	NA	False	TTTAAA	-35	NA	131270114	131261663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_131261692_131262605_131262689_131264998_131265110_131266351_131266411_131268703_131268904_131270034
transcript_79543.known	chr6	-	460	4	FSM	ENSMUSG00000030188.13	ENSMUST00000172883.8	460	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	232.368003152088	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAAAAAAACCCAGGTTAC	NA	False	NA	NA	False	TATAAA	-9	NA	131270094	131261485	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_131261692_131262605_131262689_131264998_131265110_131270034
transcript_79545.known	chr6	-	767	5	FSM	ENSMUSG00000030188.13	ENSMUST00000032307.12	767	5	0	0	0	0	multi-exon	FALSE	canonical	2	356	junction_3	64.3059095262636	2191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTAGAATAGGTATTTGC	NA	False	NA	NA	False	AATAAA	-16	NA	131270207	131261350	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_131261692_131262605_131262689_131264998_131265110_131266351_131266411_131270034
transcript_79549.known	chr6	+	574	3	FSM	ENSMUSG00000072704.7	ENSMUST00000191462.2	574	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	1.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTATTCTATCGGAATAT	NA	False	NA	NA	False	NA	NA	NA	133082218	133087860	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_133082569_133084826_133084946_133087755
transcript_7955.known	chr10	-	3730	22	FSM	ENSMUSG00000020277.11	ENSMUST00000020522.9	3730	22	0	0	0	0	multi-exon	FALSE	canonical	3	1016	junction_15	83.2280695716646	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTTCGCCAGACTGGCT	NA	False	NA	NA	False	NA	NA	NA	77845641	77822780	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_77824192_77824508_77824615_77824698_77824799_77825399_77825512_77825723_77825786_77825975_77826141_77826505_77826659_77827187_77827276_77827849_77827921_77828225_77828373_77829215_77829280_77829969_77830035_77831077_77831204_77832153_77832247_77833357_77833454_77835659_77835769_77835968_77836014_77836509_77836676_77837144_77837335_77837843_77837922_77841274_77841349_77845432
transcript_79550.known	chr6	+	1181	2	FSM	ENSMUSG00000072704.7	ENSMUST00000186945.3	1181	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAATTGTCTCTGTTATTT	NA	False	NA	NA	False	AATATA	-20	NA	133082454	133084392	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_133082569_133083325
transcript_79557.known	chr6	+	1578	6	FSM	ENSMUSG00000030200.14	ENSMUST00000111960.2	1578	6	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_3	10	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAGTCTCTAACACTAT	NA	False	NA	5	True	GATAAA	-16	NA	134391390	134415078	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_134391599_134400573_134401026_134404258_134404424_134407028_134407100_134409108_134409376_134414663
transcript_7956.known	chr10	+	1676	13	FSM	ENSMUSG00000000730.14	ENSMUST00000000746.12	1676	13	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_8	3.51484945149386	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTCTGGTGTGGTGTGTG	5591	False	NA	29	True	AATATA	-21	NA	77885675	77899456	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_77885746_77885849_77886038_77886431_77886519_77886749_77886795_77887664_77887745_77887825_77887939_77888545_77888718_77889762_77889851_77890805_77890901_77892678_77892755_77893101_77893242_77895480_77895567_77899020
transcript_79568.nnic	chr6	-	1396	5	NNC	ENSMUSG00000107666.2	novel	1505	9	NA	NA	316	-1029	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	16.4696690920006	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATGTGTAAAAATCAATTC	NA	False	NA	NA	False	AAAAAG	-6	NA	134380062	134286942	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_134287767_134291473_134291617_134293190_134293294_134375723_134375815_134379827
transcript_79574.nnic	chr6	-	1236	4	NNC	ENSMUSG00000107666.2	novel	1505	9	NA	NA	53507	-1029	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	4.54606056566195	73	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATGTGTAAAAATCAATTC	NA	False	NA	NA	False	AAAAAG	-6	NA	134326871	134286942	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_134287767_134291473_134291617_134293190_134293294_134326705
transcript_7958.nnic	chr10	-	1057	8	NNC	ENSMUSG00000000731.16	novel	1926	14	NA	NA	-53	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	6.82133507789333	17	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGGTACACCTGGTGGA	NA	False	NA	-9	True	ATTAAA	-16	NA	77874147	77865864	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_77866159_77867654_77867724_77870214_77870324_77870419_77870542_77871490_77871668_77872518_77872619_77873706_77873820_77874074
transcript_79583.known	chr6	+	1833	3	FSM	ENSMUSG00000030200.14	ENSMUST00000142612.2	1833	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	11	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAATGCCAAAGAGG	NA	False	NA	NA	False	NA	NA	NA	134391427	134405468	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_134391599_134400573_134401026_134404258
transcript_79584.known	chr6	-	941	1	FSM	ENSMUSG00000030201.16	ENSMUST00000203235.2	941	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGTAAATAGTTTTGTTT	NA	False	NA	NA	False	AATAAA	-27	NA	134518677	134517736	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_134517700_134518700
transcript_79585.known	chr6	+	1764	4	FSM	ENSMUSG00000042992.16	ENSMUST00000062755.10	1764	4	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	6.37704215656966	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTGATCTGATTCTAAT	NA	False	NA	31	True	ATTAAA	-32	NA	134617902	134688150	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_134618221_134621291_134621436_134662926_134663085_134687006
transcript_79588.known	chr6	+	485	3	FSM	ENSMUSG00000042992.16	ENSMUST00000203234.2	485	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	7	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTGGTCCAGCATTGAGT	NA	False	NA	NA	False	NA	NA	NA	134618217	134663264	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_134618221_134621291_134621436_134662926
transcript_79589.known	chr6	+	3629	5	FSM	ENSMUSG00000032652.14	ENSMUST00000046303.12	3629	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	2.06155281280883	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTCAGTTGCCTGTTTGAC	NA	False	NA	8	True	AATAAA	-19	NA	134807116	134835894	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_134807408_134826065_134826264_134828042_134828188_134829240_134829278_134832936
transcript_79592.known	chr6	+	612	4	FSM	ENSMUSG00000032652.14	ENSMUST00000111937.2	612	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	9.41629792788369	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGCCGGCGACCTTCAG	NA	False	NA	NA	False	NA	NA	NA	134807217	134833123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_134807408_134826065_134826264_134829240_134829278_134832936
transcript_79607.nic	chr6	-	2074	5	NIC	ENSMUSG00000032641.19	novel	1711	5	NA	NA	274	-4	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	26.3664085533089	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTATGGTTCCTGTGGATT	NA	False	NA	-7	True	ACTAAA	-30	NA	134875267	134846059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_134847407_134863853_134863900_134864592_134864749_134874124_134874177_134874794
transcript_79614.nnic	chr6	-	2053	5	NIC	ENSMUSG00000032641.19	novel	1610	4	NA	NA	274	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	26.7348087705897	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAATTGATTTACTTAG	NA	False	NA	-18	True	ATTAAA	-17	NA	134875267	134846119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_134847446_134863853_134863900_134864592_134864749_134874124_134874177_134874794
transcript_79616.nic	chr6	-	2080	5	NIC	ENSMUSG00000032641.19	novel	1711	5	NA	NA	203	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	26.3664085533089	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGTGAGAATTGATTTA	NA	False	NA	-23	True	ATTAAA	-12	NA	134875338	134846124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_134847407_134863853_134863900_134864592_134864749_134874124_134874177_134874794
transcript_79618.known	chr6	-	498	4	FSM	ENSMUSG00000032641.19	ENSMUST00000203762.4	498	4	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	13.9124245031395	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGCGCTTTGTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	134864731	134847211	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_134847407_134854179_134854298_134863853_134863900_134864592
transcript_79622.nic	chr6	-	2032	4	NIC	ENSMUSG00000032641.19	novel	2075	5	NA	NA	274	0	combination_of_known_junctions	FALSE	canonical	3	74	junction_3	8.64098759787715	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTCCTGTGGATTTTGT	NA	False	NA	-3	True	ACTAAA	-34	NA	134875267	134846055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_134847407_134864592_134864749_134874124_134874177_134874794
transcript_79626.known	chr6	-	1610	4	FSM	ENSMUSG00000032641.19	ENSMUST00000046255.14	1610	4	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	18.9267594221045	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCACTATTGATTATGGT	NA	False	NA	-18	True	ACTAAA	-19	NA	134874821	134846070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_134847446_134864592_134864749_134874124_134874177_134874794
transcript_79634.known	chr6	-	679	4	FSM	ENSMUSG00000032641.19	ENSMUST00000203409.3	679	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	40.5983031938802	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTTCCAGTACCTCACC	NA	False	NA	NA	False	NA	NA	NA	134874788	134846999	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_134847407_134864592_134864749_134874124_134874177_134874724
transcript_79636.nic	chr6	-	1963	4	NIC	ENSMUSG00000032641.19	novel	1711	5	NA	NA	274	0	combination_of_known_junctions	FALSE	canonical	3	74	junction_3	8.64098759787715	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGTGAGAATTGATTTA	NA	False	NA	-23	True	ATTAAA	-12	NA	134875267	134846124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_134847407_134864592_134864749_134874124_134874177_134874794
transcript_79639.known	chr6	-	1484	3	FSM	ENSMUSG00000032641.19	ENSMUST00000215088.2	1484	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	14.5	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGTGAGAATTGATTTA	NA	False	NA	-23	True	ATTAAA	-12	NA	134864748	134846124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_134847407_134863853_134863900_134864592
transcript_79640.known	chr6	-	1647	3	FSM	ENSMUSG00000032641.19	ENSMUST00000066107.10	1647	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	2.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAATTGATTTACTTAG	NA	False	NA	-18	True	ATTAAA	-17	NA	134864795	134846119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_134847446_134854179_134854298_134864592
transcript_7965.known	chr10	+	1452	6	FSM	ENSMUSG00000000730.14	ENSMUST00000123940.2	1452	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	8.22192191643779	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGTAGTGTTCTGGTGTG	NA	False	NA	22	True	AATATA	-14	NA	77891168	77899449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_77891551_77892245_77892585_77892678_77892755_77893101_77893242_77895480_77895567_77899020
transcript_79650.nic	chr6	-	1720	2	ISM	ENSMUSG00000032641.19	ENSMUST00000165392.8	1643	4	9817	0	-166	0	3prime_fragment	FALSE	canonical	3	94	junction_1	0	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTCCTGTGGATTTTGT	NA	False	NA	-3	True	ACTAAA	-34	NA	134864961	134846055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_134847407_134864592
transcript_79651.nic	chr6	-	1710	2	ISM	ENSMUSG00000032641.19	ENSMUST00000046255.14	1610	4	9894	0	-132	0	3prime_fragment	FALSE	canonical	3	36	junction_1	0	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCACTATTGATTATGGT	NA	False	NA	-18	True	ACTAAA	-19	NA	134864927	134846070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_134847446_134864592
transcript_79653.nic	chr6	-	1651	2	ISM	ENSMUSG00000032641.19	ENSMUST00000111932.8	1711	5	9865	0	-166	0	3prime_fragment	FALSE	canonical	3	94	junction_1	0	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGTGAGAATTGATTTA	NA	False	NA	-23	True	ATTAAA	-12	NA	134864961	134846124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_134847407_134864592
transcript_79654.known	chr6	-	610	2	FSM	ENSMUSG00000032641.19	ENSMUST00000152140.3	610	2	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	0	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATCTTCTCTATTTTTAT	NA	False	NA	NA	False	NA	NA	NA	134874888	134873660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_134874177_134874794
transcript_79656.known	chr6	+	2393	3	FSM	ENSMUSG00000003031.15	ENSMUST00000003115.9	2393	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	1.5	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTGAGTGCAACTGTCC	NA	False	NA	13	True	AATAAA	-18	NA	134897363	134902476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_134898358_134898918_134899047_134901205
transcript_79658.known	chr6	+	474	3	FSM	ENSMUSG00000098318.8	ENSMUST00000183905.8	474	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTGTTTCTGGGCTCTGTT	7971	False	NA	26	True	NA	NA	NA	134906060	134928540	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_134906165_134920602_134920701_134928268
transcript_7966.nic	chr10	-	1031	5	ISM	ENSMUSG00000000731.16	ENSMUST00000140636.8	1615	12	5249	0	-71	0	3prime_fragment	FALSE	canonical	0	0	junction_3	7.79021822544144	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGGTACACCTGGTGGA	NA	False	NA	-9	True	ATTAAA	-16	NA	77874165	77865864	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_77866159_77867654_77867724_77870214_77870324_77872518_77872619_77873706
transcript_79660.known	chr6	+	5662	2	FSM	ENSMUSG00000098318.8	ENSMUST00000183867.7	5662	2	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_1	0	885	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGGCTCACCCCTTGTTT	7965	False	NA	NA	False	NA	NA	NA	134906054	134933761	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_134906224_134928268
transcript_79662.known	chr6	+	544	2	FSM	ENSMUSG00000098318.8	ENSMUST00000184504.2	544	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGGTACCAGGAGATAAAG	8028	False	NA	NA	False	NA	NA	NA	134906117	134928681	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_134906249_134928268
transcript_79670.known	chr6	+	1764	12	FSM	ENSMUSG00000030204.11	ENSMUST00000032326.11	1764	12	0	0	0	0	multi-exon	TRUE	canonical	3	485	junction_5	30.2182146373304	1245	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTCTGTGTGTGCACT	6574	False	NA	20	True	ATTAAA	-20	NA	134988574	135000739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_134988692_134989264_134989359_134992157_134992347_134992538_134992611_134992784_134992904_134993544_134993617_134994083_134994201_134995013_134995161_134995936_134996075_134997578_134997650_134998411_134998542_135000241
transcript_79687.nnic	chr6	+	2286	5	NNC	ENSMUSG00000046733.8	novel	2083	4	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	64.8127109446905	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATTTATTTATTTATTT	NA	False	NA	32	True	AATAAA	-32	NA	135042613	135061707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_135042774_135043619_135043788_135055543_135056483_135060440_135060497_135060744
transcript_79688.known	chr6	+	2083	4	FSM	ENSMUSG00000046733.8	ENSMUST00000050104.8	2083	4	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_1	5.71547606649408	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATTTATTTATTTATTT	NA	False	NA	32	True	AATAAA	-32	NA	135042648	135061707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_135042774_135055543_135056483_135060440_135060497_135060744
transcript_79689.known	chr6	+	4221	13	FSM	ENSMUSG00000030207.16	ENSMUST00000111915.8	4221	13	0	0	0	0	multi-exon	TRUE	canonical	3	64	junction_6	10.7558123821495	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGTGTCCTTTTCTCAT	NA	False	NA	NA	False	AATAAA	-20	NA	135174974	135213240	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_135175100_135186030_135186430_135188832_135188932_135193883_135194076_135195676_135195808_135202137_135202286_135202653_135202796_135203847_135203992_135204150_135204233_135205410_135205567_135208618_135208737_135210253_135210475_135210976
transcript_7969.known	chr10	+	1657	12	FSM	ENSMUSG00000000730.14	ENSMUST00000151242.8	1657	12	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_7	3.67029622512479	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTAGTGTTCTGGTGTGG	5708	False	NA	23	True	AATATA	-15	NA	77885792	77899450	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_77886038_77886431_77886519_77886749_77886795_77887664_77887745_77887825_77887939_77888545_77888718_77889762_77889851_77890805_77890901_77892678_77892755_77893101_77893242_77895480_77895567_77899020
transcript_79701.known	chr6	-	1058	4	FSM	ENSMUSG00000042770.9	ENSMUST00000045855.9	1058	4	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_1	18.8738502225228	7761	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGACAGTTTTAAATTATT	NA	False	NA	-29	True	AATACA	-20	NA	135145213	135114519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_135115062_135129818_135130000_135132148_135132288_135145017
transcript_79702.known	chr6	-	1426	7	FSM	ENSMUSG00000030206.14	ENSMUST00000111911.9	1426	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.372677996249965	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGTCTCCTGAGCCTTATT	6321	False	NA	NA	False	NA	NA	NA	135231324	135214326	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_135214744_135217070_135217183_135218242_135218396_135219048_135219220_135221078_135221398_135230270_135230331_135231130
transcript_79703.known	chr6	-	1279	1	FSM	ENSMUSG00000047104.6	ENSMUST00000050471.4	1279	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTGTTGTTGATCTTA	NA	False	NA	NA	False	ATTAAA	-34	NA	135287403	135286124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_135286100_135287400
transcript_79705.known	chr6	+	2721	5	FSM	ENSMUSG00000030208.16	ENSMUST00000032330.16	2721	5	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_2	1.6393596310755	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGTGACTGTTTTCTT	NA	False	NA	7	True	TATAAA	-20	NA	135339928	135360171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_135340101_135354175_135354287_135356898_135356996_135357098_135357240_135357971
transcript_79706.known	chr6	+	1573	2	FSM	ENSMUSG00000094973.3	ENSMUST00000204530.2	1573	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAAAAAGTAAATAGCA	NA	False	NA	NA	False	ATTAAA	-41	NA	136304536	136306981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_136304647_136305518
transcript_79707.known	chr6	+	8059	15	FSM	ENSMUSG00000030213.13	ENSMUST00000032335.13	8059	15	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_2	25.3043716477963	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATTCCAAGAGTTCTCAG	7048	False	NA	33	True	AATAAA	-33	NA	136495799	136587860	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_136495962_136536761_136538438_136540757_136540836_136542014_136542161_136543645_136543784_136548470_136548537_136552242_136552317_136559375_136559465_136564042_136564682_136570073_136570145_136573432_136573512_136576647_136576804_136580282_136580466_136582379_136582493_136583471
transcript_7971.known	chr10	-	1378	7	FSM	ENSMUSG00000053329.8	ENSMUST00000001242.9	1378	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	5.05799696849784	1353	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTATGTCTCAGGCCTTGTG	4131	False	NA	-2	True	AATAAA	-29	NA	78005616	77997899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_77998553_77999230_77999388_78000671_78000765_78003228_78003349_78004642_78004757_78005206_78005260_78005428
transcript_79712.known	chr6	-	2010	11	FSM	ENSMUSG00000030214.8	ENSMUST00000032336.7	2010	11	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	4.98497743224581	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGGTCCTGCGTTTAGC	NA	False	NA	0	True	AATAAA	-17	NA	136638926	136589067	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_136589347_136589734_136589842_136590789_136590976_136593924_136594066_136594199_136594401_136611428_136611574_136612489_136612631_136617114_136617254_136618128_136618213_136628728_136628949_136638559
transcript_79716.known	chr6	+	577	2	FSM	ENSMUSG00000060032.7	ENSMUST00000203982.2	577	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGCCACAAAACATCCCAT	NA	False	NA	NA	False	NA	NA	NA	136785330	136786791	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_136785713_136786596
transcript_79717.known	chr6	+	1831	1	FSM	ENSMUSG00000060032.7	ENSMUST00000074556.7	1831	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2876	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTGACAGTGTTTGATT	NA	False	NA	NA	False	AATAAA	-19	NA	136785241	136787072	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_136785200_136787100
transcript_7972.known	chr10	-	3872	21	FSM	ENSMUSG00000032834.12	ENSMUST00000042556.11	3872	21	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_16	14.9260678009984	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTTTTGTCTGTGTGTGG	NA	False	NA	-5	True	AATACA	-17	NA	78020983	78006742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_78007969_78009214_78009290_78009406_78009558_78009666_78009886_78010764_78010831_78011319_78011429_78012086_78012235_78012789_78012971_78013583_78013735_78013999_78014148_78014261_78014411_78014794_78014932_78015548_78015620_78015959_78016104_78016882_78017113_78017344_78017481_78018219_78018364_78018456_78018557_78018779_78018875_78019891_78020005_78020904
transcript_79721.known	chr6	-	2739	12	FSM	ENSMUSG00000030216.13	ENSMUST00000116514.4	2739	12	0	0	0	0	multi-exon	FALSE	canonical	3	1089	junction_11	207.479880534104	704	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTGTGTTTGTGTAATG	2832	False	NA	-1	True	AATAAA	-19	NA	136805231	136790651	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_136791640_136793048_136793232_136793941_136794236_136794927_136795030_136797504_136797697_136798174_136798375_136798526_136798661_136799791_136799989_136801327_136801422_136802513_136802546_136802998_136803108_136805017
transcript_79730.nic	chr6	-	382	3	ISM	ENSMUSG00000030216.13	ENSMUST00000151333.2	2339	7	-117	5788	-27	0	5prime_fragment	FALSE	canonical	3	1089	junction_2	347	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTACGAATTTAGAAACATTC	2805	False	NA	6	True	AAAAAG	-14	NA	136805258	136802513	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_136802546_136802998_136803108_136805017
transcript_79731.nic	chr6	-	355	2	ISM	ENSMUSG00000030216.13	ENSMUST00000141598.3	779	3	-125	1641	-27	-480	5prime_fragment	FALSE	canonical	3	1089	junction_1	0	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACGGAAGGAAGAAGTAGAA	2805	False	NA	NA	False	NA	NA	NA	136805258	136802993	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_136803108_136805017
transcript_79733.known	chr6	-	1153	6	FSM	ENSMUSG00000030220.14	ENSMUST00000111892.8	1153	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	4.60434577328853	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGAGTTGTCTTATGC	5824	False	NA	NA	False	AATAAA	-20	NA	136918501	136900652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_136901325_136903669_136903734_136906609_136906687_136909257_136909342_136910581_136910772_136918435
transcript_79735.known	chr6	-	1193	6	FSM	ENSMUSG00000030220.14	ENSMUST00000032344.12	1193	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	3.18747549010185	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGAGTTGTCTTATGC	5571	False	NA	NA	False	AATAAA	-20	NA	136918754	136900652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_136901325_136903669_136903734_136906609_136906687_136909257_136909342_136910581_136910772_136918648
transcript_79736.known	chr6	-	2262	5	FSM	ENSMUSG00000030222.14	ENSMUST00000117919.8	2262	5	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	7.44983221287567	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTCTGTTGGAATTCTTT	NA	False	NA	-12	True	AATAAA	-14	NA	137146730	137031828	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_137033539_137034810_137034885_137043996_137044054_137141932_137142101_137146477
transcript_79739.known	chr6	+	2650	10	FSM	ENSMUSG00000030224.11	ENSMUST00000064910.7	2650	10	0	0	0	0	multi-exon	FALSE	canonical	3	757	junction_9	58.2073772423402	1079	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGCTTGGATTCCTGAAGT	NA	False	NA	23	True	AATAAA	-26	NA	137712075	137728930	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_137712465_137713327_137713464_137716355_137716438_137716752_137716826_137718300_137718398_137718949_137719088_137722504_137722642_137725684_137725835_137726361_137726428_137727548
transcript_79744.known	chr6	+	1729	9	FSM	ENSMUSG00000030225.12	ENSMUST00000087675.9	1729	9	0	0	0	0	multi-exon	FALSE	canonical	3	541	junction_6	37.3511629671688	1185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATTTTGTTTATTTTC	NA	False	NA	20	True	AATACA	-20	NA	137731555	137814892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_137731637_137755121_137755220_137756507_137756656_137757727_137757824_137759926_137760062_137773751_137773881_137807190_137807304_137813731_137813882_137814113
transcript_79754.known	chr6	+	317	2	FSM	ENSMUSG00000030225.12	ENSMUST00000204100.3	317	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTTGAAAAATTCCAGTCG	NA	False	NA	NA	False	ATTAAA	-14	NA	137731543	137737961	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_137731637_137737737
transcript_79755.known	chr6	+	1167	4	FSM	ENSMUSG00000008540.12	ENSMUST00000008684.11	1167	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.24721912892465	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTGTTTTTTCTCTTT	2214	False	NA	NA	False	ATTAAA	-17	NA	138117313	138133753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_138117605_138124656_138124814_138127765_138127861_138133129
transcript_79756.known	chr6	+	3657	19	FSM	ENSMUSG00000030231.12	ENSMUST00000205255.3	3657	19	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	27.8989025847272	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTGGTGTTAGAATCTTT	1070	False	NA	17	True	AATAAA	-17	NA	140480900	140542836	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_140481087_140482373_140482490_140489445_140489914_140496486_140496950_140498440_140498525_140515078_140515142_140515831_140515913_140516046_140516197_140518590_140518693_140522952_140523065_140525152_140525203_140527693_140527815_140529558_140529675_140532034_140532227_140534900_140535042_140535371_140535482_140537353_140537491_140539280_140539384_140541974
transcript_79757.known	chr6	+	2816	16	FSM	ENSMUSG00000030231.12	ENSMUST00000205026.3	2816	16	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_15	16.4681510801911	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTGGTGTTAGAATCTTT	NA	False	NA	17	True	AATAAA	-17	NA	140489878	140542836	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_140489914_140496486_140496950_140498440_140498525_140515078_140515142_140515831_140515913_140516046_140516197_140518590_140518693_140522952_140523065_140525155_140525203_140527693_140527815_140529558_140529675_140532034_140532227_140534900_140535042_140535371_140535482_140537353_140537491_140541974
transcript_79759.nnic	chr6	+	444	4	NNC	ENSMUSG00000030231.12	novel	2902	21	NA	NA	14	-78051	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	45.3063645271464	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATTATTTCTAATTAGTAT	NA	False	NA	NA	False	NA	NA	NA	140369793	140420704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_140369983_140370102_140370183_140372223_140372282_140420587
transcript_79760.nnic	chr6	+	535	4	NNC	ENSMUSG00000030231.12	novel	2902	21	NA	NA	14	-18695	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	48.5065860362167	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAGTCCAGGAGGACAGG	NA	False	NA	NA	False	NA	NA	NA	140369793	140480060	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_+_140369983_140370102_140370183_140372223_140372282_140479852
transcript_79761.known	chr6	+	5932	8	FSM	ENSMUSG00000030232.19	ENSMUST00000032359.15	5932	8	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	98.0522559554811	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTGATGACTGTGGTTC	NA	False	NA	8	True	NA	NA	NA	140568388	140601207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_140568785_140579414_140579623_140583385_140583494_140587897_140588085_140589673_140589799_140592535_140592604_140593697_140593812_140596481
transcript_79763.known	chr6	-	213	1	FSM	ENSMUSG00000080921.5	ENSMUST00000117356.2	213	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	60668	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGCCCTCTGCGTGTGAC	NA	False	NA	NA	False	NA	NA	NA	140692898	140692685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_140692700_140692900
transcript_79764.known	chr6	-	2112	16	FSM	ENSMUSG00000030243.17	ENSMUST00000032370.13	2112	16	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_1	39.7130820875047	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGTCTAAAGTTACATTT	6231	False	NA	NA	False	TTTAAA	-16	NA	142332762	142296067	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_142296272_142308531_142308596_142309272_142309403_142310161_142310382_142311241_142311334_142312392_142312532_142312999_142313118_142313206_142313356_142314198_142314281_142315016_142315184_142318541_142318741_142320545_142320653_142322506_142322687_142323878_142324077_142330254_142330303_142332747
transcript_79765.known	chr6	-	3389	15	FSM	ENSMUSG00000030243.17	ENSMUST00000111803.9	3389	15	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_14	18.9118524546197	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGAGGAGACCTATCTTA	6180	False	NA	NA	False	AATAAA	-26	NA	142332813	142307101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_142308596_142309272_142309403_142310161_142310382_142311241_142311334_142312392_142312532_142312999_142313118_142313206_142313356_142314198_142314281_142315016_142315184_142318541_142318741_142320545_142320653_142322506_142322687_142323878_142324077_142330254_142330303_142332747
transcript_79769.known	chr6	+	2831	12	FSM	ENSMUSG00000041671.14	ENSMUST00000041852.8	2831	12	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_5	7.76088944378656	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCGTAGTAATAGACTCC	NA	False	NA	NA	False	NA	NA	NA	142291379	142308983	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_142291534_142293283_142293365_142294248_142294369_142296787_142296917_142299250_142299325_142300350_142300512_142302208_142302310_142303105_142303239_142304124_142304238_142304761_142304885_142306584_142306723_142307479
transcript_7977.known	chr10	-	1556	3	FSM	ENSMUSG00000112433.2	ENSMUST00000218662.2	1556	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCTGGCTTGTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	78099973	78084713	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_78085088_78095637_78095751_78098904
transcript_79773.known	chr6	-	349	4	FSM	ENSMUSG00000030243.17	ENSMUST00000128082.2	349	4	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_3	19.3448241713959	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTAAACTGCAAAAATTC	6185	False	NA	NA	False	NA	NA	NA	142332808	142322644	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_142322687_142323878_142324077_142330254_142330303_142332747
transcript_79774.known	chr6	+	367	3	FSM	ENSMUSG00000030245.11	ENSMUST00000146508.2	367	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	306	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCCCAACAGCTGTGGCA	NA	False	NA	NA	False	TTTAAA	-15	NA	142332978	142347436	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_142333096_142341913_142341996_142347268
transcript_79775.known	chr6	+	2818	5	FSM	ENSMUSG00000030245.11	ENSMUST00000032372.7	2818	5	0	0	0	0	multi-exon	FALSE	canonical	3	520	junction_3	45.9911676303179	647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGTCAAGTTTATCTT	NA	False	NA	25	True	AATAAA	-19	NA	142332946	142349584	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_142333096_142338055_142338148_142339653_142339833_142341913_142341996_142347268
transcript_79776.nic	chr6	-	1522	8	NIC	ENSMUSG00000030246.13	novel	1304	8	NA	NA	-57	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_7	281.760717703544	1227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGCCTGCCTTTTTCTC	NA	False	NA	-4	True	AATAAA	-19	NA	142453588	142435974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_142436331_142438218_142438343_142439825_142439944_142441293_142441468_142444230_142444405_142447065_142447184_142451137_142451273_142453265
transcript_79778.known	chr6	-	1287	8	FSM	ENSMUSG00000030246.13	ENSMUST00000239397.2	1287	8	0	0	0	0	multi-exon	FALSE	canonical	3	685	junction_1	65.6636450839754	3679	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTTCTGCCTGCCTTTTT	NA	False	NA	-7	True	AATAAA	-16	NA	142453669	142435977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_142436331_142438218_142438343_142439825_142439944_142441293_142441468_142444230_142444405_142447065_142447184_142451137_142451273_142453578
transcript_79779.known	chr6	+	1760	8	FSM	ENSMUSG00000030282.15	ENSMUST00000032419.9	1760	8	0	0	0	0	multi-exon	FALSE	canonical	3	681	junction_7	54.6573743554204	288	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCTGTACTGTAAGACCT	NA	False	NA	33	True	AATAAA	-22	NA	142702411	142721440	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_142702753_142710012_142710156_142710279_142710436_142713529_142713664_142716248_142716344_142716891_142717064_142717840_142717995_142720875
transcript_79784.nnic	chr6	-	1640	6	NNC	ENSMUSG00000030283.8	novel	2159	5	NA	NA	-17610	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	5.8309518948453	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGTCCCCTCCACTAGTAC	NA	False	NA	NA	False	AAAACA	-15	NA	142927788	142773957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_142774997_142813579_142813673_142822373_142822484_142859749_142859895_142927386_142927518_142927666
transcript_79787.known	chr6	-	8991	5	FSM	ENSMUSG00000030283.8	ENSMUST00000032421.4	8991	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	3.11247489949718	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAAGCTTCTGACGTCCTTT	NA	False	NA	NA	False	AATAAA	-19	NA	142910178	142767270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_142774997_142813579_142813673_142822373_142822484_142859749_142859895_142909261
transcript_79788.nnic	chr6	-	1686	5	NNC	ENSMUSG00000030283.8	novel	2159	5	NA	NA	-25319	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	5.88960949469487	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGTCCCCTCCACTAGTAC	NA	False	NA	NA	False	AAAACA	-15	NA	142935497	142773957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_142774997_142813579_142813673_142822373_142822484_142859749_142859895_142935198
transcript_79793.known	chr6	-	3494	26	FSM	ENSMUSG00000030279.16	ENSMUST00000203187.3	3494	26	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	32.7664218369965	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGGAAAGCTTATCAAGA	NA	False	NA	NA	False	AATAAA	-17	NA	143045797	142957458	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_142957863_142958927_142959075_142963608_142963800_142966049_142966101_142974885_142974973_142975298_142975387_142975847_142975938_142976503_142976603_142976970_142977033_142977287_142977352_142980747_142980889_142981960_142982126_142984548_142984736_142987077_142987270_142992768_142992865_142995850_142995966_143007478_143007588_143012781_143012868_143018268_143018421_143023988_143024188_143025594_143025751_143027058_143027155_143028888_143029061_143036324_143036412_143045403_143045523_143045658
transcript_79797.nic	chr6	-	554	4	ISM	ENSMUSG00000108094.2	ENSMUST00000204101.2	1633	9	6147	24192	6147	-24192	internal_fragment	FALSE	canonical	0	0	junction_1	0.816496580927726	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAGGCACAAAGCATGGT	6631	False	NA	NA	False	NA	NA	NA	143093510	143079131	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_143079283_143079386_143079500_143092984_143093105_143093340
transcript_79799.nnic	chr6	-	1898	3	Intergenic	novelGene_114	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTTTATGTAGTTTCCA	7639	False	NA	NA	False	NA	NA	NA	143062391	143054144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr6_-_143054237_143056864_143056934_143060654
transcript_7980.nic	chr10	-	1488	11	NIC	ENSMUSG00000001211.16	novel	3513	11	NA	NA	-86	0	combination_of_known_junctions	FALSE	canonical	3	187	junction_10	110.528910245239	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGGAAAGAGACACTTAGAG	NA	False	NA	-18	True	ATTAAA	-20	NA	78188132	78109444	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_-_78109610_78109905_78110105_78113843_78113920_78118207_78118311_78118928_78119083_78120022_78120185_78120828_78120999_78123680_78123908_78165109_78165171_78187460_78187546_78188046
transcript_79803.known	chr6	-	725	5	FSM	ENSMUSG00000107802.2	ENSMUST00000204351.2	725	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.433012701892219	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGTGTGTGGTGTTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	143167174	143147122	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_143147328_143148985_143149233_143150765_143150844_143166603_143166649_143167024
transcript_7981.known	chr10	-	5980	10	FSM	ENSMUSG00000001211.16	ENSMUST00000001240.12	5980	10	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_9	65.0870262621847	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGACTCTCTGCCTCTTTTT	NA	False	NA	-3	True	CATAAA	-22	NA	78188276	78105011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_78109610_78109905_78110105_78113843_78113920_78118207_78118311_78118928_78119083_78120022_78120185_78120828_78120999_78123680_78123908_78165109_78165171_78188046
transcript_79811.known	chr6	-	7833	11	FSM	ENSMUSG00000030268.18	ENSMUST00000032402.12	7833	11	0	0	0	0	multi-exon	FALSE	canonical	3	243	junction_10	1157.84085262181	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTTTGCCCAGTGTCGTGA	NA	False	NA	-5	True	AATAAA	-16	NA	144994538	144939560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_144994288
transcript_79813.known	chr6	-	2556	11	FSM	ENSMUSG00000030268.18	ENSMUST00000111742.8	2556	11	0	0	0	0	multi-exon	FALSE	canonical	3	3523	junction_3	257.484057758922	1449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACTCTGGATTTGAATC	8485	False	NA	-24	True	AATAAA	-16	NA	145021910	144944883	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
transcript_7982.nnic	chr10	-	1342	9	NNC	ENSMUSG00000001211.16	novel	1316	9	NA	NA	-4496	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	155.257044928725	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGGAAAGAGACACTTAGAG	NA	False	NA	-18	True	ATTAAA	-20	NA	78147880	78109444	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_78109610_78109905_78110105_78113843_78113920_78118207_78118311_78118928_78119083_78120022_78120185_78120828_78120999_78123680_78123908_78147794
transcript_79831.known	chr6	+	2319	19	FSM	ENSMUSG00000030263.14	ENSMUST00000032396.13	2319	19	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	13.9594872380979	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGCTGGAACGCCTGGT	NA	False	NA	17	True	AATAAA	-22	NA	145067464	145120660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_145067833_145083185_145083334_145083907_145083990_145093361_145093409_145093505_145093571_145093704_145093804_145095012_145095084_145104369_145104428_145106099_145106164_145106258_145106287_145106602_145106744_145110922_145111058_145113694_145113843_145115472_145115517_145117229_145117293_145117380_145117431_145117709_145117812_145119429_145119538_145120162
transcript_79834.known	chr6	+	1761	17	FSM	ENSMUSG00000030263.14	ENSMUST00000132948.2	1761	17	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	14.1684894660652	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCAGTGTGGCTGGAACG	NA	False	NA	11	True	AATAAA	-16	NA	145091202	145120654	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_145091249_145093361_145093409_145093505_145093571_145093704_145093804_145095012_145095084_145104369_145104428_145106099_145106164_145106258_145106287_145106602_145106744_145110922_145111058_145113694_145113843_145115472_145115517_145117229_145117293_145117380_145117431_145117709_145117812_145119429_145119538_145120162
transcript_79837.nic	chr6	+	1597	9	ISM	ENSMUSG00000030263.14	ENSMUST00000132948.2	1761	17	15086	0	2816	0	3prime_fragment	FALSE	canonical	3	39	junction_1	6.7256505261573	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCAGTGTGGCTGGAACG	NA	False	NA	11	True	AATAAA	-16	NA	145106288	145120654	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_145106744_145110922_145111058_145113694_145113843_145115472_145115517_145117229_145117293_145117380_145117431_145117709_145117812_145119429_145119538_145120162
transcript_79839.nnic	chr6	-	937	3	NNC	ENSMUSG00000043541.17	novel	2682	15	NA	NA	26518	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGTAGTCCCCTGTGCT	NA	False	NA	NA	False	ATTAAA	-24	NA	145124555	145120559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_145121051_145123058_145123227_145124277
transcript_7984.known	chr10	-	1852	12	FSM	ENSMUSG00000061032.10	ENSMUST00000219374.2	1852	12	0	0	0	0	multi-exon	FALSE	canonical	2	25	junction_11	269.317686996093	4057	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGCTTCTCCCATTTTT	NA	False	NA	-17	True	AATAAA	-21	NA	78248826	78236217	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_78236819_78237683_78237801_78238258_78238279_78238443_78238542_78239338_78239419_78240758_78241121_78241248_78241314_78241399_78241530_78244246_78244309_78244967_78245054_78246799_78246858_78248653
transcript_79841.known	chr6	+	361	2	FSM	ENSMUSG00000086863.2	ENSMUST00000141307.2	361	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATTGAGGCGCAGCGATG	1363	False	NA	NA	False	NA	NA	NA	145128000	145133356	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_145128096_145133090
transcript_79843.known	chr6	-	4678	5	FSM	ENSMUSG00000030265.15	ENSMUST00000032399.12	4678	5	0	0	0	0	multi-exon	FALSE	canonical	3	862	junction_1	85.6661397519463	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTAATTATGTAGTTTT	NA	False	NA	-8	True	AATAAA	-22	NA	145195965	145162424	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_145166451_145177820_145177981_145179973_145180153_145192420_145192543_145195774
transcript_79848.known	chr6	+	1618	4	FSM	ENSMUSG00000040370.14	ENSMUST00000111724.8	1618	4	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_1	142.199390528464	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTAAAGGAGTCTTTATC	NA	False	NA	14	True	NA	NA	NA	145156900	145162265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_145156979_145160247_145160511_145160909_145160998_145161076
transcript_7985.known	chr10	-	1984	13	FSM	ENSMUSG00000061032.10	ENSMUST00000062678.11	1984	13	0	0	0	0	multi-exon	FALSE	canonical	3	782	junction_1	71.0948115000119	5361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTGCTTCTCCCATTT	NA	False	NA	-19	True	AATAAA	-19	NA	78248877	78236219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_78236819_78237683_78237801_78238258_78238279_78238443_78238542_78239338_78239419_78240758_78241121_78241248_78241314_78241399_78241530_78244246_78244309_78244967_78245054_78246799_78246858_78247237_78247321_78248653
transcript_79851.known	chr6	+	1336	3	FSM	ENSMUSG00000040370.14	ENSMUST00000111721.2	1336	3	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	139.5	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTAAAGGAGTCTTTATC	NA	False	NA	14	True	NA	NA	NA	145156911	145162265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_145156971_145160909_145160998_145161076
transcript_79854.known	chr6	+	2436	3	FSM	ENSMUSG00000040370.14	ENSMUST00000039729.5	2436	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	153.5	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAACAAACAAACAAACAAA	NA	False	NA	NA	False	AAAACA	-33	NA	145156881	145162665	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_145156979_145160247_145160998_145161076
transcript_79858.known	chr6	+	872	3	FSM	ENSMUSG00000040370.14	ENSMUST00000111725.8	872	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	160.5	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAAATACACTTAATTT	NA	False	NA	NA	False	AATATA	-7	NA	145156859	145161517	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_145157203_145160909_145160998_145161076
transcript_79860.known	chr6	+	522	2	FSM	ENSMUSG00000040370.14	ENSMUST00000126007.2	522	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTAAATGAAGGAAGGGCCA	NA	False	NA	NA	False	NA	NA	NA	145156895	145160694	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_145156971_145160247
transcript_79861.known	chr6	+	899	2	FSM	ENSMUSG00000086013.2	ENSMUST00000139612.2	899	2	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGAGTGAGGATTCTGACT	NA	False	NA	6	True	NA	NA	NA	145196254	145197575	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_145196516_145196937
transcript_79862.known	chr6	+	378	1	FSM	ENSMUSG00000067344.8	ENSMUST00000119876.2	378	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	628	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGGTTCAATCAGCTGTAC	891	False	NA	NA	False	NA	NA	NA	145212125	145212503	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_145212100_145212500
transcript_79863.known	chr6	+	747	2	FSM	ENSMUSG00000087277.2	ENSMUST00000126922.2	747	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATGGGATGTAATTCTG	8409	False	NA	NA	False	AATAAA	-17	NA	145248877	145254677	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_145249197_145254249
transcript_79865.nnic	chr6	-	842	3	NNC	ENSMUSG00000054966.14	novel	643	2	NA	NA	-1481	-41488	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAAGCAATTTTTTTACAT	NA	False	NA	NA	False	NA	NA	NA	145561526	145417210	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr6_-_145417708_145489170_145489231_145561241
transcript_79867.known	chr6	+	1775	5	FSM	ENSMUSG00000067338.7	ENSMUST00000087445.7	1775	5	0	0	0	0	multi-exon	FALSE	canonical	3	1181	junction_3	43.6312674580971	4501	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGCTTCCCTGTGTGCT	NA	False	NA	16	True	AATAAA	-36	NA	145561482	145567205	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_145561816_145563958_145564182_145564457_145564607_145564908_145565590_145566816
transcript_79869.known	chr6	+	1131	1	FSM	ENSMUSG00000030259.13	ENSMUST00000058538.7	1131	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAATACAATTGTTGCTTG	NA	False	NA	NA	False	AATAAA	-18	NA	145765669	145766800	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_145765700_145766800
transcript_79870.nic	chr6	-	588	3	ISM	ENSMUSG00000030256.12	ENSMUST00000111703.2	744	5	-226	978	30	180	5prime_fragment	FALSE	canonical	3	9	junction_2	2.5	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGCCTTCTAACTTGTG	NA	False	NA	NA	False	AATAAA	-15	NA	145811254	145810208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_145810410_145810722_145810787_145810931
transcript_79871.known	chr6	+	4431	3	FSM	ENSMUSG00000030255.14	ENSMUST00000032383.14	4431	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATGGTGTTGAGTATGTT	NA	False	NA	NA	False	AATAAA	-19	NA	145879847	145910949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_145880098_145901320_145901408_145906855
transcript_79873.known	chr6	-	3059	18	FSM	ENSMUSG00000040250.15	ENSMUST00000032427.15	3059	18	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_2	56.6296167637544	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCGGAGTGTTACTTTAG	NA	False	NA	-2	True	AATAAA	-26	NA	146479333	146451129	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_146451484_146451584_146451663_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456597_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722_146477959_146478798
transcript_79878.nic	chr6	-	3003	17	NIC	ENSMUSG00000040250.15	novel	3059	18	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	201	junction_1	24.9699819783675	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCGGAGTGTTACTTTAG	NA	False	NA	-2	True	AATAAA	-26	NA	146479355	146451129	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_146451484_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456597_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722_146477959_146478798
transcript_79884.known	chr6	+	2880	7	FSM	ENSMUSG00000040242.15	ENSMUST00000111663.9	2880	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	146.964470385041	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTCTCAGGGTTAATTT	NA	False	NA	29	True	AATAAA	-20	NA	146479356	146500696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_146479707_146487179_146487317_146490237_146490356_146491391_146491535_146494131_146494246_146496673_146496788_146498792
transcript_79889.known	chr6	+	2766	6	FSM	ENSMUSG00000040242.15	ENSMUST00000067404.13	2766	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	164.658434342125	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTCTCAGGGTTAATTT	NA	False	NA	29	True	AATAAA	-20	NA	146479356	146500696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_146479707_146487179_146487317_146490237_146490356_146491391_146491535_146496673_146496788_146498792
transcript_79894.known	chr6	+	918	5	FSM	ENSMUSG00000040242.15	ENSMUST00000058245.5	918	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	170.445005793658	1033	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGGTGTGCTTTTCATGGC	NA	False	NA	NA	False	AATAAA	-16	NA	146479418	146494363	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_146479707_146487179_146487317_146490237_146490356_146491391_146491535_146494131
transcript_79895.known	chr6	-	3241	12	FSM	ENSMUSG00000040234.17	ENSMUST00000037709.16	3241	12	0	0	0	0	multi-exon	FALSE	canonical	3	689	junction_8	114.912830779186	1018	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTAATGTCCTCCTTATTA	NA	False	NA	NA	False	AATAAA	-20	NA	146536095	146503849	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_146505520_146507625_146507789_146509076_146509175_146511313_146511467_146512371_146512453_146514875_146514963_146520031_146520210_146521337_146521510_146523372_146523494_146525061_146525213_146527593_146527749_146535883
transcript_799.known	chr1	+	770	5	FSM	ENSMUSG00000051285.18	ENSMUST00000182114.8	770	5	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	40.8495716011808	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCCAAGGGGATTCCACAA	NA	False	NA	NA	False	CATAAA	-12	NA	7159153	7239822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_7159441_7217860_7217964_7231115_7231288_7233471_7233596_7239738
transcript_79901.known	chr6	+	814	4	FSM	ENSMUSG00000030291.13	ENSMUST00000032429.9	814	4	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_3	35.4902177445498	2773	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTTTTTGTTTGTCCTT	NA	False	NA	36	True	AATAAA	-21	NA	146544044	146552100	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_146544151_146549662_146549778_146550647_146550749_146551608
transcript_79905.known	chr6	+	699	3	FSM	ENSMUSG00000030291.13	ENSMUST00000125539.8	699	3	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	124.5	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTTTTTGTTTGTCCTT	NA	False	NA	36	True	AATAAA	-21	NA	146544044	146552100	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_146544151_146550647_146550749_146551608
transcript_79908.known	chr6	+	1713	3	FSM	ENSMUSG00000030291.13	ENSMUST00000075077.3	1713	3	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_2	43	21961	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTTTTTGTTTGTCCTT	NA	False	NA	36	True	AATAAA	-21	NA	146548657	146552100	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_146549778_146550647_146550749_146551608
transcript_79911.known	chr6	+	4550	14	FSM	ENSMUSG00000001630.14	ENSMUST00000001675.14	4550	14	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_10	10.7620855417108	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGGTGGGGTGTTTGTTTT	NA	False	NA	15	True	AATAAA	-20	NA	146626492	146680310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_146626546_146659958_146660104_146661618_146661671_146667692_146667816_146668235_146668320_146668916_146669041_146669830_146669986_146670331_146670435_146670592_146670655_146673079_146673198_146673595_146673720_146674815_146674912_146676897_146676990_146677091
transcript_79918.known	chr6	+	2923	17	FSM	ENSMUSG00000040187.16	ENSMUST00000111639.8	2923	17	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	1.62018517460197	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTATTTGCCTTTCTGAA	NA	False	NA	NA	False	TTTAAA	-5	NA	146697562	146735027	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_146697648_146704432_146704554_146706933_146707075_146707926_146708029_146711146_146711305_146712283_146712364_146714715_146714809_146720317_146720433_146722025_146722167_146723407_146723649_146724086_146724194_146724591_146724743_146726664_146726727_146728713_146728823_146729596_146729685_146731190_146731300_146734007
transcript_79919.nic	chr6	+	834	5	NIC	ENSMUSG00000030292.11	novel	478	4	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	0.433012701892219	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCGTTATTATATACAATTTA	6261	False	NA	NA	False	AATAAA	-18	NA	146763299	146772904	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_+_146763584_146765555_146765613_146768234_146768292_146769586_146769763_146772644
transcript_79921.known	chr6	+	4851	27	FSM	ENSMUSG00000016487.16	ENSMUST00000016631.14	4851	27	0	0	0	0	multi-exon	TRUE	canonical	1	79	junction_5	45.7139938177494	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTATTTGTCATTGTT	7539	False	NA	13	True	AATAAA	-17	NA	146789984	146933523	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_146790182_146840403_146840488_146878101_146878201_146879541_146879748_146892011_146892099_146893899_146894014_146894803_146894936_146897887_146897981_146899664_146899780_146902438_146902501_146903691_146903768_146907345_146907501_146911469_146911586_146912360_146912418_146913952_146914017_146917719_146917892_146920531_146920680_146920957_146921087_146922798_146922950_146923643_146923756_146923859_146923949_146927012_146927136_146927652_146927779_146928805_146928995_146931058_146931236_146931580_146931647_146931811
transcript_79927.known	chr6	-	1125	3	FSM	ENSMUSG00000072662.3	ENSMUST00000100780.3	1125	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	3	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGAAAAAAAAACAAAAC	NA	False	NA	NA	False	NA	NA	NA	146988530	146976557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_146977263_146983083_146983219_146988245
transcript_79933.known	chr6	+	2459	13	FSM	ENSMUSG00000030301.18	ENSMUST00000032441.14	2459	13	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	9.07683253612673	159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGATTGTCATGTTTTTG	NA	False	NA	17	True	AATAAA	-18	NA	147377368	147534110	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_147377558_147409281_147409326_147412321_147412401_147435526_147435688_147437085_147437290_147438873_147438979_147464132_147464211_147476970_147477079_147491884_147491978_147492066_147492136_147493536_147493714_147508379_147508494_147533072
transcript_7994.known	chr10	+	603	3	FSM	ENSMUSG00000005054.8	ENSMUST00000005185.8	603	3	0	0	0	0	multi-exon	TRUE	canonical	3	3631	junction_2	117.5	34457	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATTGTGTCCTTAGTTTT	NA	False	NA	23	True	AATATA	-18	NA	78261502	78263456	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_78261692_78262760_78262863_78263144
transcript_79946.known	chr6	-	4174	14	FSM	ENSMUSG00000030304.12	ENSMUST00000136008.8	4174	14	0	0	0	0	multi-exon	FALSE	canonical	3	798	junction_5	68.0164442351299	469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	148113872	148080576	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_148083238_148083385_148083469_148084543_148084707_148089530_148089629_148090983_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853_148100895_148102913_148102985_148103993_148104041_148106273_148106383_148108030_148108174_148113467
transcript_7996.known	chr10	-	5124	11	FSM	ENSMUSG00000032788.16	ENSMUST00000041616.15	5124	11	0	0	0	0	multi-exon	TRUE	canonical	3	285	junction_4	40.3910881259715	208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTAGTGTGGTCATTTCT	6802	False	NA	-2	True	AATAAA	-17	NA	78300809	78272577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_78276748_78276970_78277038_78279614_78279752_78280816_78280929_78282783_78282830_78283728_78283815_78285063_78285111_78286116_78286201_78287312_78287418_78289307_78289363_78300594
transcript_79978.known	chr6	-	1744	12	FSM	ENSMUSG00000030304.12	ENSMUST00000203993.3	1744	12	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	280.286364778938	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCATGTTAATAATAAAGGGG	NA	False	NA	NA	False	NA	NA	NA	148113872	148085195	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_148085673_148089530_148089629_148090983_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853_148100895_148102913_148102985_148103993_148104041_148106273_148106383_148108030_148108174_148113467
transcript_79982.known	chr6	-	817	6	FSM	ENSMUSG00000030304.12	ENSMUST00000148437.8	817	6	0	0	0	0	multi-exon	FALSE	canonical	3	910	junction_4	66.0593672388708	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGACAGCATAAAGGAAAAGC	NA	False	NA	NA	False	NA	NA	NA	148113475	148100455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_148100895_148102913_148102985_148103993_148104041_148106273_148106383_148108030_148108174_148113467
transcript_79984.known	chr6	-	713	4	FSM	ENSMUSG00000030304.12	ENSMUST00000132413.2	713	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	425.360500699766	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTTAAATGTTCTTATT	NA	False	NA	NA	False	AAGAAA	-1	NA	148113503	148104198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_148104624_148106273_148106383_148108030_148108174_148113467
transcript_79989.nnic	chr6	+	843	2	Genic_Genomic	ENSMUSG00000063171.5	novel	943	1	NA	NA	-8	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3687	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTTGCATATGTTTC	NA	False	NA	13	True	ATTAAA	-17	NA	148256145	148257096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr6_+_148256583_148256690
transcript_79992.known	chr6	+	943	1	FSM	ENSMUSG00000063171.5	ENSMUST00000071745.4	943	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37093	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTTGCATATGTTTC	NA	False	NA	13	True	ATTAAA	-17	NA	148256153	148257096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_148256200_148257100
transcript_79995.nnic	chr6	+	853	2	Genic_Genomic	ENSMUSG00000063171.5	novel	943	1	NA	NA	0	0	multi-exon	FALSE	canonical	2	209	junction_1	0	3702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTTGCATATGTTTC	NA	False	NA	13	True	ATTAAA	-17	NA	148256153	148257096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr6_+_148256583_148256672
transcript_79997.known	chr6	+	789	1	FSM	ENSMUSG00000063171.5	ENSMUST00000204242.2	789	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGACTCTGAGGGACATT	NA	False	NA	-25	True	NA	NA	NA	148256207	148256996	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_148256200_148257000
transcript_79998.known	chr6	-	5360	25	FSM	ENSMUSG00000040029.16	ENSMUST00000048418.14	5360	25	0	0	0	0	multi-exon	TRUE	canonical	3	188	junction_1	23.3505516827524	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTCTGCTCTATGGGAT	NA	False	NA	-1	True	AATAAA	-27	NA	148732965	148672180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_148674308_148676474_148676592_148678700_148678902_148684095_148684302_148685999_148686221_148688192_148688289_148690568_148690667_148691294_148691421_148692938_148693006_148698138_148698265_148700120_148700282_148701224_148701391_148701678_148701769_148702984_148703102_148703410_148703488_148706119_148706220_148707882_148708018_148711377_148711463_148712165_148712261_148713564_148713655_148717982_148718140_148719461_148719621_148723092_148723250_148725901_148725984_148732661
transcript_79999.nic	chr6	-	1459	11	ISM	ENSMUSG00000040029.16	ENSMUST00000048418.14	5360	25	-21	31233	-21	0	5prime_fragment	FALSE	canonical	3	206	junction_10	20.3668848869924	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTATACAGTTGTTCTTT	NA	False	NA	NA	False	AAGAAA	-7	NA	148732986	148703413	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_-_148703488_148706119_148706220_148707882_148708018_148711377_148711463_148712165_148712261_148713564_148713655_148717982_148718140_148719461_148719621_148723092_148723250_148725901_148725984_148732661
transcript_8.known	ERCC-00019	+	627	1	FSM	ERCC-00019A	DQ883651	627	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	199	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00019_+_0_600
transcript_80.known	ERCC-00170	+	1007	1	FSM	ERCC-00170A	DQ516773	1007	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00170_+_0_1000
transcript_8000.nic	chr10	+	2346	16	NIC	ENSMUSG00000032763.12	novel	2329	16	NA	NA	40	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	41.9345521815444	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTATACTGGTTTATT	5285	False	NA	30	True	AATAAA	-39	NA	78410219	78420336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_+_78410403_78410920_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
transcript_80001.known	chr6	+	1661	1	FSM	ENSMUSG00000107909.2	ENSMUST00000204670.2	1661	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTACAAGCCTTTTTCACT	NA	False	NA	NA	False	NA	NA	NA	148732949	148734610	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_148732900_148734600
transcript_80002.known	chr6	-	1408	11	FSM	ENSMUSG00000040029.16	ENSMUST00000204936.2	1408	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_10	65.1536645170477	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATACAGTTGTTCTTTGT	NA	False	NA	NA	False	AAGAAA	-9	NA	148732962	148703411	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_148703488_148706119_148706220_148707882_148708018_148711377_148711463_148712165_148712261_148713564_148713655_148717982_148718140_148719461_148719621_148723092_148723250_148725901_148725955_148732661
transcript_80003.known	chr6	-	3697	19	FSM	ENSMUSG00000030309.17	ENSMUST00000111569.9	3697	19	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_10	9.04805415272352	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCAGTTGTTTCTGTTTG	NA	False	NA	-1	True	AATAAA	-14	NA	148797735	148743989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_148744897_148746669_148746734_148747650_148747752_148749603_148749790_148752772_148752942_148760098_148760240_148761984_148762087_148763901_148763967_148765000_148765071_148767327_148767451_148770486_148771144_148772110_148772155_148774505_148774662_148777950_148778034_148779239_148779479_148784945_148785033_148792106_148792170_148796434_148796655_148797515
transcript_80005.known	chr6	-	2952	18	FSM	ENSMUSG00000030309.17	ENSMUST00000072324.12	2952	18	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_10	17.2566621205624	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCCAGTTGTTTCTGTTT	NA	False	NA	-2	True	AATAAA	-13	NA	148797648	148743990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_148744897_148746669_148746734_148747650_148747752_148749603_148749790_148752772_148752942_148760098_148760240_148761984_148762087_148763901_148763967_148765000_148765071_148767327_148767451_148772110_148772155_148774505_148774662_148777950_148778034_148779239_148779479_148784945_148785033_148792106_148792170_148796434_148796655_148797515
transcript_80008.nic	chr6	-	718	4	NIC	ENSMUSG00000030309.17	novel	598	4	NA	NA	4	99	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	34.4705993887867	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGGTTTTTCTTCATTCTA	NA	False	NA	NA	False	AATAAA	-16	NA	148797731	148789069	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_148789289_148792106_148792170_148796434_148796655_148797515
transcript_80009.known	chr6	-	1163	1	FSM	ENSMUSG00000030309.17	ENSMUST00000203014.2	1163	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCAGTTGTTTCTGTTTG	NA	False	NA	-1	True	AATAAA	-14	NA	148745152	148743989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_148744000_148745200
transcript_8001.nic	chr10	+	2583	16	NIC	ENSMUSG00000032763.12	novel	2329	16	NA	NA	-61	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	39.9503024602651	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTATACTGGTTTATT	5314	False	NA	30	True	AATAAA	-39	NA	78410248	78420336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_+_78410669_78410920_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
transcript_80014.known	chr6	-	2737	6	FSM	ENSMUSG00000039985.15	ENSMUST00000081956.12	2737	6	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_5	848.577303490967	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTCATGACTTTGTTT	NA	False	NA	NA	False	AATAAA	-25	NA	148846324	148822554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148846086
transcript_80016.known	chr6	+	1747	2	FSM	ENSMUSG00000085355.3	ENSMUST00000154673.2	1747	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCAGTAATTCCGTCTTG	NA	False	NA	NA	False	AATAAA	-20	NA	148846364	148848627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_148847919_148848434
transcript_80017.known	chr6	-	2697	6	FSM	ENSMUSG00000039985.15	ENSMUST00000054080.15	2697	6	0	0	0	0	multi-exon	FALSE	canonical	3	1893	junction_3	186.383046439315	1057	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTCTCTGGTAAGAATTT	NA	False	NA	NA	False	AATAAA	-24	NA	148847965	148822532	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
transcript_80020.known	chr6	+	1558	5	FSM	ENSMUSG00000039958.18	ENSMUST00000111551.2	1558	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	10.2316909648406	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGAACTCAAGTGTTATC	NA	False	NA	NA	False	NA	NA	NA	149043143	149052669	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_149043203_149044103_149044214_149045512_149045941_149048655_149048787_149051839
transcript_80022.known	chr6	+	698	4	FSM	ENSMUSG00000039958.18	ENSMUST00000166416.8	698	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	12.0830459735946	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTGAATACCCAACAAGGT	NA	False	NA	NA	False	ATTAAA	-36	NA	149043135	149051911	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_149043203_149045512_149045941_149048655_149048787_149051839
transcript_80023.known	chr6	+	1398	3	FSM	ENSMUSG00000039958.18	ENSMUST00000111548.8	1398	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	1	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTTGGGAAAGAAAATGTT	NA	False	NA	NA	False	NA	NA	NA	149043013	149046630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_149043203_149044103_149044214_149045531
transcript_80024.known	chr6	+	1250	2	FSM	ENSMUSG00000039958.18	ENSMUST00000111547.2	1250	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTTGGGAAAGAAAATGTT	NA	False	NA	NA	False	NA	NA	NA	149043051	149046630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_149043203_149045531
transcript_80027.known	chr6	-	1369	7	FSM	ENSMUSG00000068250.14	ENSMUST00000095319.10	1369	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	36.5087508535815	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTGTCCCATATTTATTT	NA	False	NA	-1	True	TATAAA	-29	NA	149090183	149059075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149084891_149085037_149086489_149086623_149089733
transcript_80028.nic	chr6	-	1164	7	NIC	ENSMUSG00000068250.14	novel	1369	7	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_6	33.0840680019183	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTGTCCCATATTTATTT	NA	False	NA	-1	True	TATAAA	-29	NA	149090214	149059075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149084891_149085037_149086489_149086623_149089969
transcript_80030.nic	chr6	-	914	6	NIC	ENSMUSG00000068250.14	novel	1457	7	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_5	34.1607962436475	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTGTCCCATATTTATTT	NA	False	NA	-1	True	TATAAA	-29	NA	149090231	149059075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149084891_149085037_149090103
transcript_80032.nic	chr6	-	767	5	NIC	ENSMUSG00000068250.14	novel	1457	7	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_4	42.3932482831877	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTGTCCCATATTTATTT	NA	False	NA	-1	True	TATAAA	-29	NA	149090229	149059075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149090103
transcript_80037.known	chr6	+	1957	5	FSM	ENSMUSG00000032712.17	ENSMUST00000130664.8	1957	5	0	0	0	0	multi-exon	TRUE	canonical	3	64	junction_3	55.879334283794	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAATTAAAATTAATA	NA	False	NA	NA	False	ATTAAA	-39	NA	149210911	149228169	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_149211403_149211819_149211876_149219132_149219207_149226229_149226299_149226902
transcript_80039.known	chr6	+	4152	4	FSM	ENSMUSG00000032712.17	ENSMUST00000190785.7	4152	4	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	71.6286720990042	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAAAGAAGAAATAT	NA	False	NA	15	True	AAAAAG	-33	NA	149210953	149230475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_149211403_149211819_149211876_149219132_149219207_149226902
transcript_80041.nic	chr6	+	1787	3	ISM	ENSMUSG00000032712.17	ENSMUST00000046689.13	6066	5	-100	9105	-86	-113	5prime_fragment	FALSE	canonical	3	27	junction_2	92	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATACCTACAATCCTAATAC	NA	False	NA	NA	False	AAAAAG	-5	NA	149210825	149228056	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr6_+_149211403_149211819_149211876_149226902
transcript_80042.known	chr6	+	5469	3	FSM	ENSMUSG00000032712.17	ENSMUST00000189837.2	5469	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	117	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACAGTTTAAGTCTTCATG	NA	False	NA	7	True	AATAAA	-19	NA	149226955	149237156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_149231283_149232929_149233005_149236089
transcript_80043.known	chr6	+	466	2	FSM	ENSMUSG00000032712.17	ENSMUST00000137983.2	466	2	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAAGAGTATCATTGAA	NA	False	NA	NA	False	NA	NA	NA	149211070	149211953	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_149211403_149211819
transcript_80044.known	chr6	+	9667	9	FSM	ENSMUSG00000003452.16	ENSMUST00000086829.11	9667	9	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_7	6.68487097856047	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACTGTTTTTGTTGTTTTT	150	False	NA	NA	False	AATAAA	-32	NA	149310481	149464827	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_149311140_149385481_149385695_149396057_149396211_149413189_149413616_149414293_149415389_149418430_149418583_149420403_149420612_149451847_149451924_149458141
transcript_80045.known	chr6	+	4049	8	FSM	ENSMUSG00000003452.16	ENSMUST00000111513.9	4049	8	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_7	6.57763681898362	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAATAGATA	182	False	NA	NA	False	AATGAA	-12	NA	149310513	149459317	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_149311140_149385481_149385695_149396057_149396211_149413189_149413616_149414293_149415389_149418430_149418583_149420403_149420612_149458141
transcript_80048.known	chr6	+	1352	3	FSM	ENSMUSG00000096299.4	ENSMUST00000203729.3	1352	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	5.5	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGATCCTTTGTTGTA	NA	False	NA	NA	False	TATAAA	-16	NA	149467629	149484989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_149467693_149483509_149483637_149483827
transcript_80050.known	chr6	+	873	1	FSM	ENSMUSG00000096299.4	ENSMUST00000203277.2	873	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAATTCTCTCCTATTT	NA	False	NA	NA	False	AAAAAG	-23	NA	149467587	149468460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_149467600_149468500
transcript_80051.known	chr6	+	291	3	FSM	ENSMUSG00000096299.4	ENSMUST00000144085.3	291	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	2	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGAGAAACTCTATGAAGG	NA	False	NA	NA	False	NA	NA	NA	149483509	149485154	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr6_+_149483637_149483827_149483889_149485051
transcript_80052.known	chr7	-	3449	12	FSM	ENSMUSG00000054753.10	ENSMUST00000171749.3	3449	12	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_11	40.7771610034849	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTTTATTTTTCTGTG	9506	False	NA	87	True	NA	NA	NA	3219029	3204497	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3212041_3212201_3213722_3214128_3218840
transcript_80057.known	chr7	+	795	1	FSM	ENSMUSG00000107470.3	ENSMUST00000203929.3	795	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	580	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAAGGTGGATGCGGTTGT	NA	False	NA	NA	False	NA	NA	NA	3230841	3231636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_3230800_3231600
transcript_80059.known	chr7	+	3127	18	FSM	ENSMUSG00000078816.11	ENSMUST00000100301.11	3127	18	0	0	0	0	multi-exon	TRUE	canonical	3	18	junction_10	8.64845927034781	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGGATGTTTTCTTGTA	NA	False	NA	11	True	AATAAA	-22	NA	3352037	3379615	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_3352476_3352821_3352854_3353859_3353943_3359079_3359192_3359351_3359484_3360904_3361062_3362213_3362349_3362648_3362737_3363027_3363058_3367375_3367529_3368046_3368236_3370855_3370948_3371032_3371096_3371971_3372111_3375931_3376013_3377550_3377659_3378343_3378485_3378661
transcript_8006.known	chr10	+	2329	16	FSM	ENSMUSG00000032763.12	ENSMUST00000105384.5	2329	16	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	41.9345521815444	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTATACTGGTTTATT	5399	False	NA	30	True	AATAAA	-39	NA	78410333	78420336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_78410500_78410920_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
transcript_80061.known	chr7	+	2813	3	FSM	ENSMUSG00000068566.14	ENSMUST00000096744.8	2813	3	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_1	308.5	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAGACTCATGCTTTCT	230	False	NA	14	True	AATATA	-8	NA	3339058	3347865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_3339156_3341727_3341816_3345237
transcript_80065.nnic	chr7	+	2811	3	NNC	ENSMUSG00000068566.14	novel	2798	2	NA	NA	-100	0	at_least_one_novel_splicesite	FALSE	canonical	3	97	junction_1	427.5	76	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAGACTCATGCTTTCT	2690	False	NA	14	True	AATATA	-8	NA	3341518	3347865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_3341614_3341727_3341816_3345237
transcript_80066.known	chr7	+	4027	3	FSM	ENSMUSG00000068566.14	ENSMUST00000203566.3	4027	3	0	0	0	0	multi-exon	FALSE	canonical	3	270	junction_1	341	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCGTCCAGTTCATAGCG	271	False	NA	NA	False	ATTAAA	-14	NA	3339099	3348958	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_3339318_3341727_3341816_3345237
transcript_80067.known	chr7	+	2798	2	FSM	ENSMUSG00000068566.14	ENSMUST00000164553.8	2798	2	0	0	0	0	multi-exon	FALSE	canonical	3	952	junction_1	0	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAAAAAACCCTCAATATA	2790	False	NA	-13	True	TTTAAA	-10	NA	3341618	3347838	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_3341816_3345237
transcript_80070.known	chr7	-	1092	2	FSM	ENSMUSG00000107585.2	ENSMUST00000204020.2	1092	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCTCTTCCCAGCTCTCA	NA	False	NA	NA	False	AATAAA	-15	NA	3471961	3470180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_3471101_3471789
transcript_80072.known	chr7	+	1977	4	FSM	ENSMUSG00000078815.9	ENSMUST00000183200.8	1977	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	6.16441400296898	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTCTGTGTTGGAGCTC	NA	False	NA	NA	False	ATTAAA	-21	NA	3472710	3484183	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_3473509_3478953_3479029_3480334_3480473_3483217
transcript_80073.known	chr7	+	868	3	FSM	ENSMUSG00000078815.9	ENSMUST00000108647.3	868	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	11.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGAATCCCCAGAACCCA	NA	False	NA	NA	False	NA	NA	NA	3473177	3483679	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_3473509_3478953_3479029_3483217
transcript_80074.nnic	chr7	+	2194	4	NNC	ENSMUSG00000107985.2	novel	506	4	NA	NA	480	813	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0.942809041582063	30	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTTGTTTGTGTCTCTAG	NA	False	NA	NA	False	AATAAA	-18	NA	3500352	3524349	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_3501205_3522491_3522628_3522801_3522957_3523298
transcript_80076.nic	chr7	+	2045	3	ISM	ENSMUSG00000107985.2	ENSMUST00000203144.2	506	4	493	-813	493	813	3prime_fragment	FALSE	canonical	1	1	junction_1	1.5	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTTGTTTGTGTCTCTAG	NA	False	NA	NA	False	AATAAA	-18	NA	3500365	3524349	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_3501205_3522801_3522957_3523298
transcript_80079.nnic	chr7	-	904	5	NNC	ENSMUSG00000118635.2	novel	531	2	NA	NA	-18280	4731	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	8.2915619758885	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTGTTTGTTTATTTATT	NA	False	NA	NA	False	NA	NA	NA	3582161	3557720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_3558141_3562682_3562745_3563643_3563930_3564045_3564082_3582061
transcript_80081.nnic	chr7	-	835	4	NNC	ENSMUSG00000118635.2	novel	531	2	NA	NA	-18266	4731	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	8.16496580927726	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTGTTTGTTTATTTATT	NA	False	NA	NA	False	NA	NA	NA	3582147	3557720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_3558141_3562682_3562745_3563643_3563911_3582061
transcript_80082.nnic	chr7	-	857	4	NNC	ENSMUSG00000118635.2	novel	531	2	NA	NA	-18269	4731	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	8.16496580927726	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTGTTTGTTTATTTATT	NA	False	NA	NA	False	NA	NA	NA	3582150	3557720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_3558141_3562682_3562745_3563643_3563930_3582061
transcript_80098.known	chr7	+	343	4	FSM	ENSMUSG00000035674.14	ENSMUST00000148403.2	343	4	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	1620.57650921585	10606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTTTTCTTTCGTGGGTT	273	False	NA	22	True	AATAAA	-24	NA	3620389	3623162	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_3620417_3620615_3620691_3622428_3622507_3622999
transcript_80099.known	chr7	+	351	4	FSM	ENSMUSG00000035674.14	ENSMUST00000108644.8	351	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	1435.61655357163	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCTCCAATAAAAATGTGAA	268	False	NA	-13	True	NA	NA	NA	3620384	3623127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_3620407_3620615_3620691_3622428_3622507_3622951
transcript_801.known	chr1	-	388	1	FSM	ENSMUSG00000098201.2	ENSMUST00000182051.2	388	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAATGTAAATCATAAATA	NA	False	NA	NA	False	AAAACA	-31	NA	7206810	7206422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_7206400_7206800
transcript_80100.known	chr7	+	782	4	FSM	ENSMUSG00000035674.14	ENSMUST00000150497.8	782	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	1418.73472581107	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAACCCCACAATCTTTTC	262	False	NA	11	True	AATAAA	-13	NA	3620378	3623151	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_3620407_3620615_3621140_3622428_3622507_3622999
transcript_80101.known	chr7	-	1166	6	FSM	ENSMUSG00000006335.17	ENSMUST00000108641.10	1166	6	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_1	47.3142684610044	1152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTCTAGGTCACCGTT	NA	False	NA	-1	True	AATAAA	-16	NA	3632928	3623322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_3623474_3623745_3623983_3624061_3624132_3627597_3627669_3631826_3632086_3632550
transcript_80102.known	chr7	-	1091	6	FSM	ENSMUSG00000006335.17	ENSMUST00000155592.8	1091	6	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	68.2800117164606	621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTCTAGGTCACCGTT	NA	False	NA	-1	True	AATAAA	-16	NA	3632883	3623322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_3623474_3623775_3623983_3624061_3624132_3627597_3627669_3631826_3632086_3632550
transcript_80107.known	chr7	+	827	3	FSM	ENSMUSG00000008373.17	ENSMUST00000143231.2	827	3	0	0	0	0	multi-exon	FALSE	canonical	3	674	junction_1	159.5	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAGAAAAATAAACATG	2940	False	NA	NA	False	AAAAAG	-2	NA	3632990	3634420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_3633056_3633556_3633742_3633843
transcript_80108.known	chr7	+	1798	13	FSM	ENSMUSG00000008373.17	ENSMUST00000108636.2	1798	13	0	0	0	0	multi-exon	FALSE	canonical	2	54	junction_8	240.724759262985	528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGGGTGTGAGTGATTAT	3505	False	NA	14	True	ATTAAA	-22	NA	3633555	3644228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_3633742_3633843_3633905_3635666_3635751_3636302_3636401_3637122_3637230_3637691_3637862_3639199_3639358_3639660_3639751_3641647_3641758_3641856_3641930_3642574_3642704_3642787_3642887_3643795
transcript_80110.known	chr7	+	2822	18	FSM	ENSMUSG00000035632.17	ENSMUST00000038913.16	2822	18	0	0	0	0	multi-exon	FALSE	canonical	3	860	junction_1	78.9623448430591	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCCTCTCCTATCCC	2812	False	NA	NA	False	AATAAA	-23	NA	3648350	3664108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_3648584_3653799_3653875_3653979_3654048_3654266_3654342_3654492_3654583_3654806_3654936_3655031_3655128_3656198_3656419_3656509_3656644_3657141_3657199_3658569_3658952_3659031_3659156_3659785_3659985_3660999_3661100_3661191_3661391_3661607_3661741_3662379_3662506_3663726
transcript_80115.known	chr7	-	2310	15	FSM	ENSMUSG00000019734.17	ENSMUST00000038743.15	2310	15	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_12	9.74077271376478	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCGTTTTGAAACCCCG	5398	False	NA	-12	True	AATAAA	-16	NA	3680552	3668788	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_3669008_3669100_3669180_3669817_3669974_3670046_3670178_3670439_3670624_3672572_3672671_3672913_3673041_3673936_3674101_3674272_3674441_3674961_3675110_3677585_3677708_3677848_3678082_3678424_3678571_3679562_3679768_3680422
transcript_8012.known	chr10	+	2233	15	FSM	ENSMUSG00000032763.12	ENSMUST00000218885.2	2233	15	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_8	19.815990244945	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCCAAGGACTCAGTCACA	5893	False	NA	7	True	AATAAA	-16	NA	78410827	78420313	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
transcript_80121.known	chr7	+	2963	17	FSM	ENSMUSG00000035632.17	ENSMUST00000143085.8	2963	17	0	0	0	0	multi-exon	FALSE	canonical	3	860	junction_1	81.2505528827343	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGAGGCCTCTCCTATCC	2750	False	NA	NA	False	AATAAA	-22	NA	3648288	3664107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_3648584_3653799_3653875_3653979_3654048_3654266_3654342_3654492_3654583_3654806_3654936_3655031_3655128_3656198_3656419_3656509_3656644_3657141_3657199_3658569_3659156_3659785_3659985_3660999_3661100_3661191_3661391_3661607_3661741_3662379_3662506_3663726
transcript_80122.known	chr7	+	852	4	FSM	ENSMUSG00000035632.17	ENSMUST00000129973.2	852	4	0	0	0	0	multi-exon	FALSE	canonical	3	1010	junction_1	32.8734948958377	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCTGGCAGCTGAGGCCTC	3433	False	NA	NA	False	AATAAA	-14	NA	3661170	3664099	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_3661391_3661607_3661741_3662379_3662506_3663726
transcript_80123.known	chr7	-	455	2	FSM	ENSMUSG00000019734.17	ENSMUST00000145034.3	455	2	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGCGTTTTGAAACCCC	7660	False	NA	-13	True	AATAAA	-15	NA	3669882	3668789	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_3669180_3669817
transcript_80129.known	chr7	+	1375	6	FSM	ENSMUSG00000035585.17	ENSMUST00000205287.2	1375	6	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_5	529.055913869224	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTTGTTCTTTATTTT	2173	False	NA	NA	False	NA	NA	NA	3696761	3703886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_3696889_3697596_3697844_3697976_3698227_3698350_3698621_3698711_3698833_3703526
transcript_80146.known	chr7	+	1365	5	FSM	ENSMUSG00000035585.17	ENSMUST00000038521.14	1365	5	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	497.531908524468	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTATTTTGAGTCCTTAC	2175	False	NA	6	True	AATAAA	-16	NA	3696763	3704011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_3696889_3697596_3697844_3697976_3698227_3698362_3698621_3703526
transcript_80147.known	chr7	+	1238	5	FSM	ENSMUSG00000035585.17	ENSMUST00000108629.8	1238	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	534.869610278991	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATGTTTGTATTTTGA	2219	False	NA	-2	True	AATAAA	-8	NA	3696807	3704003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_3696889_3697596_3697844_3697976_3698227_3698350_3698621_3703613
transcript_80150.nic	chr7	+	1562	5	NIC	ENSMUSG00000035585.17	novel	1779	5	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	82	junction_1	468.595241119668	557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTATTTTGAGTCCTTAC	2159	False	NA	6	True	AATAAA	-16	NA	3696747	3704011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_3697058_3697596_3697844_3697976_3698227_3698350_3698621_3703526
transcript_80162.known	chr7	+	1319	4	FSM	ENSMUSG00000035585.17	ENSMUST00000108627.4	1319	4	0	0	0	0	multi-exon	FALSE	canonical	3	1035	junction_3	83.107694522763	1012	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATGTTTGTATTTTGA	2933	False	NA	-2	True	AATAAA	-8	NA	3697521	3704003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_3697844_3697976_3698227_3698350_3698621_3703526
transcript_80166.known	chr7	-	2878	8	FSM	ENSMUSG00000035596.15	ENSMUST00000038608.14	2878	8	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_4	25.6960252623964	332	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTGTGAGTATAACTG	7393	False	NA	-2	True	AATAAA	-15	NA	3696522	3680787	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_3681849_3686807_3686985_3688672_3689034_3691521_3691682_3694260_3694388_3694804_3694935_3695038_3695118_3695739
transcript_8017.known	chr10	+	2331	14	FSM	ENSMUSG00000032763.12	ENSMUST00000218215.2	2331	14	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_8	17.1491887433841	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCACAGAATCTGTGTATA	5894	False	NA	20	True	AATAAA	-29	NA	78410828	78420326	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711
transcript_80186.known	chr7	+	914	4	FSM	ENSMUSG00000006333.15	ENSMUST00000108625.8	914	4	0	0	0	0	multi-exon	FALSE	canonical	3	14286	junction_1	337.374503416538	1554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTTTTCCAGCTGAAAAAT	1323	False	NA	-37	True	NA	NA	NA	3707050	3709856	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_3707448_3707644_3707768_3708731_3708919_3709649
transcript_80187.known	chr7	+	751	5	FSM	ENSMUSG00000006333.15	ENSMUST00000006496.15	751	5	0	0	0	0	multi-exon	FALSE	canonical	3	8457	junction_1	2746.02161089457	116690	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGGTGTGCCTCTGTA	1264	False	NA	3	True	AATAAA	-18	NA	3706991	3709896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709649
transcript_80188.known	chr7	+	813	5	FSM	ENSMUSG00000006333.15	ENSMUST00000146927.2	813	5	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_3	7209.4740229437	22358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTATTGGTGTGCCTCT	1635	False	NA	0	True	AATAAA	-15	NA	3707362	3709893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_3707448_3707644_3707768_3708731_3708919_3709006_3709181_3709649
transcript_80189.known	chr7	+	1347	5	FSM	ENSMUSG00000006333.15	ENSMUST00000108623.8	1347	5	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_4	5925.24712564801	928	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTATTGGTGTGCCTCTG	1309	False	NA	1	True	AATAAA	-16	NA	3707036	3709894	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709006
transcript_80190.known	chr7	+	478	3	FSM	ENSMUSG00000006333.15	ENSMUST00000108624.8	478	3	0	0	0	0	multi-exon	FALSE	canonical	1	174	junction_2	7056	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAAGAATTGATACTTG	1591	False	NA	-18	True	NA	NA	NA	3707318	3709875	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_3707448_3707644_3707768_3709649
transcript_80191.known	chr7	+	2512	14	FSM	ENSMUSG00000030428.17	ENSMUST00000119661.8	2512	14	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_13	14.8917196323819	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGTGAGAGGATAAAAACT	290	False	NA	NA	False	NA	NA	NA	4122528	4138346	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_4122780_4125475_4125655_4127618_4127731_4128521_4128743_4131168_4131265_4132299_4132373_4132656_4132733_4133579_4133636_4133795_4133889_4134289_4134383_4136073_4136217_4136355_4136402_4136661_4136738_4137349
transcript_80198.nnic	chr7	+	660	5	NNC	ENSMUSG00000035545.14	novel	5105	15	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	154.395595792108	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGAGTCACGGTTCTCT	92	False	NA	NA	False	ATTAAA	-20	NA	4140047	4143452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_4140151_4141694_4141788_4142417_4142590_4142934_4143043_4143268
transcript_80200.known	chr7	+	874	4	FSM	ENSMUSG00000035545.14	ENSMUST00000117274.8	874	4	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_1	63.2947250742289	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGAGTCACGGTTCTC	103	False	NA	NA	False	ATTAAA	-19	NA	4140058	4143451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_4140151_4141694_4141788_4142417_4142590_4142934
transcript_80202.known	chr7	+	339	3	FSM	ENSMUSG00000035545.14	ENSMUST00000132086.8	339	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	197	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGTACAACTATGCCTAT	92	False	NA	NA	False	NA	NA	NA	4140047	4142998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_4140151_4142417_4142590_4142934
transcript_80203.known	chr7	+	3620	16	FSM	ENSMUSG00000035545.14	ENSMUST00000121270.8	3620	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	106.117209830556	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTGTTTCTGCTTGGCCTG	109	False	NA	15	True	ATTAAA	-15	NA	4140064	4151171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_4140155_4141694_4141788_4142417_4142590_4142934_4143043_4144021_4144133_4145030_4145284_4145495_4145638_4145832_4146037_4146417_4146697_4146786_4146928_4147051_4147338_4147710_4147813_4147893_4147963_4148053_4148184_4148264_4148473_4149939
transcript_80204.known	chr7	+	531	5	FSM	ENSMUSG00000035545.14	ENSMUST00000144248.3	531	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	153.181877191788	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCCTCAAACTCACAACATG	114	False	NA	NA	False	NA	NA	NA	4140069	4145107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_4140151_4141694_4141788_4142417_4142590_4142934_4143043_4145030
transcript_80207.known	chr7	-	421	3	FSM	ENSMUSG00000063838.7	ENSMUST00000143825.2	421	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	67.5	1393	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGCTGTGCCTTCACC	NA	False	NA	NA	False	NA	NA	NA	4167538	4154549	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_4154787_4167083_4167187_4167457
transcript_80209.known	chr7	-	3034	7	FSM	ENSMUSG00000008435.16	ENSMUST00000008579.14	3034	7	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	6.10100173924104	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAATTTGTCATTGTCCTTT	NA	False	NA	-2	True	AATAAA	-22	NA	4448648	4428665	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_4430802_4433392_4433495_4434420_4434634_4437992_4438098_4445592_4445749_4447201_4447321_4448445
transcript_8021.known	chr10	+	3020	12	FSM	ENSMUSG00000032763.12	ENSMUST00000218875.2	3020	12	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_8	17.4725286148956	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTATACTGGTTTATT	5486	False	NA	30	True	AATAAA	-39	NA	78410420	78420336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297
transcript_80212.known	chr7	+	3154	18	FSM	ENSMUSG00000006154.14	ENSMUST00000163137.8	3154	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.235294117647059	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCACCTGCTGTCCCCCTC	2507	False	NA	NA	False	TATAAA	-20	NA	4467859	4482239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_4467968_4468357_4468412_4471852_4471894_4472194_4472254_4472879_4473042_4473181_4473432_4473806_4473890_4474225_4474488_4474794_4474922_4475111_4475201_4475297_4475373_4475473_4475623_4476929_4477072_4477183_4477213_4480328_4480459_4480562_4480695_4480888_4481751_4481839
transcript_80213.nic	chr7	+	752	2	ISM	ENSMUSG00000006154.14	ENSMUST00000164987.2	676	4	898	-160	898	0	3prime_fragment	FALSE	canonical	0	0	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGGCTCCTCGCTCTTC	779	False	NA	NA	False	NA	NA	NA	4481562	4482403	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_4481751_4481839
transcript_80214.known	chr7	-	2667	22	FSM	ENSMUSG00000019254.17	ENSMUST00000124248.8	2667	22	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_7	53.3921869151542	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTTTGTCTCCTGATTG	8480	False	NA	-3	True	AATAAA	-17	NA	4504360	4484518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_4485158_4485235_4485287_4485377_4485429_4485582_4485688_4485789_4485893_4485971_4486013_4486101_4486188_4486339_4486401_4486472_4486557_4486641_4486733_4486939_4487072_4487448_4487517_4487617_4487771_4488009_4488084_4488187_4488316_4488387_4488462_4489356_4489432_4489509_4489655_4492731_4492892_4500215_4500335_4500414_4500546_4504264
transcript_80215.known	chr7	-	1027	14	FSM	ENSMUSG00000064179.14	ENSMUST00000071798.13	1027	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	20.2312079507856	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACTGGGAGTACAACTTG	9181	False	NA	82	True	ATTAAA	-15	NA	4518974	4507568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_4507800_4510381_4510423_4510520_4510612_4511472_4511583_4512009_4512124_4512556_4512635_4512950_4513068_4513315_4513380_4515263_4515283_4516579_4516613_4516809_4516837_4517211_4517226_4517335_4517379_4518929
transcript_80216.known	chr7	-	1059	14	FSM	ENSMUSG00000064179.14	ENSMUST00000108587.9	1059	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	20.2312079507856	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACTGGGAGTACAACTTG	9152	False	NA	82	True	ATTAAA	-15	NA	4519003	4507568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_4507800_4510381_4510423_4510520_4510612_4511472_4511583_4512009_4512124_4512556_4512635_4512950_4513068_4513315_4513380_4515263_4515286_4516579_4516613_4516809_4516837_4517211_4517226_4517335_4517379_4518929
transcript_80219.known	chr7	-	885	13	FSM	ENSMUSG00000064179.14	ENSMUST00000163710.8	885	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	20.3570558338435	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTTCTTCAGGGTTGTT	9197	False	NA	-11	True	AATAAA	-19	NA	4518958	4507661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_4507800_4510381_4510423_4510520_4510612_4511472_4511583_4512009_4512124_4512556_4512635_4512950_4513068_4513315_4513380_4515263_4515283_4516809_4516837_4517211_4517226_4517335_4517379_4518929
transcript_80222.nic	chr7	-	944	13	NIC	ENSMUSG00000064179.14	novel	885	13	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	20.3570558338435	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTTCTTCAGGGTTGTT	9141	False	NA	-11	True	AATAAA	-19	NA	4519014	4507661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_4507800_4510381_4510423_4510520_4510612_4511472_4511583_4512009_4512124_4512556_4512635_4512950_4513068_4513315_4513380_4515263_4515286_4516809_4516837_4517211_4517226_4517335_4517379_4518929
transcript_80224.nic	chr7	-	981	6	ISM	ENSMUSG00000064179.14	ENSMUST00000166161.8	750	12	4417	-185	-13	0	3prime_fragment	TRUE	canonical	3	28	junction_3	11.499565209172	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACTGGGAGTACAACTTG	9872	False	NA	82	True	ATTAAA	-15	NA	4512950	4507568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_4507800_4510381_4510423_4510520_4510612_4511472_4511583_4512009_4512124_4512556
transcript_80225.nic	chr7	-	888	6	ISM	ENSMUSG00000064179.14	ENSMUST00000166161.8	750	12	4417	-92	-13	0	3prime_fragment	FALSE	canonical	3	28	junction_3	11.499565209172	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTTCTTCAGGGTTGTT	9872	False	NA	-11	True	AATAAA	-19	NA	4512950	4507661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_4507800_4510381_4510423_4510520_4510612_4511472_4511583_4512009_4512124_4512556
transcript_80227.known	chr7	-	485	4	FSM	ENSMUSG00000064179.14	ENSMUST00000086502.5	485	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	18.0800688297608	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGGTCGAGTTGGAGGCC	7330	False	NA	NA	False	GGGGCT	-3	NA	4511024	4507784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_4507800_4510381_4510423_4510520_4510612_4510686
transcript_80229.known	chr7	-	2224	12	FSM	ENSMUSG00000055809.8	ENSMUST00000094897.5	2224	12	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_9	6.85022772137618	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCGGTCTCCAGTGCCAAGA	NA	False	NA	1	True	AATAAA	-35	NA	4535452	4525931	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_4526859_4526936_4527012_4527142_4527255_4529412_4529531_4529865_4529989_4530092_4530219_4530440_4530624_4530951_4531110_4533772_4533867_4534736_4534880_4535185_4535275_4535376
transcript_80233.nic	chr7	-	1271	9	Fusion	ENSMUSG00000055809.8_ENSMUSG00000035458.16	novel	912	8	NA	NA	-349	0	multi-exon	FALSE	canonical	2	6	junction_8	7.33037345569787	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGAACTGTGTGTCTGCT	6302	False	NA	-5	True	AATAAA	-14	NA	4526142	4521306	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr7_-_4521451_4522396_4522574_4523436_4523527_4523961_4524094_4524343_4524386_4524814_4524902_4525068_4525082_4525303_4525441_4525693
transcript_80239.nic	chr7	-	802	3	ISM	ENSMUSG00000055809.8	ENSMUST00000094897.5	2224	12	-13	8324	-13	-8324	5prime_fragment	FALSE	canonical	3	9	junction_1	1.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAACAAAAAATCAGGTCT	NA	False	NA	NA	False	NA	NA	NA	4535465	4534255	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_4534880_4535185_4535275_4535376
transcript_8024.known	chr10	+	1606	10	FSM	ENSMUSG00000032763.12	ENSMUST00000218271.2	1606	10	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_9	51.1079709180283	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACACATGGTAGTGTATATT	5922	False	NA	NA	False	AATAAA	-15	NA	78410856	78417593	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78417247
transcript_80240.known	chr7	-	912	8	FSM	ENSMUSG00000035458.16	ENSMUST00000098859.10	912	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	4.77664385637157	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACTGTGTGTCTGCTAAC	6917	False	NA	-2	True	AATAAA	-17	NA	4525527	4521303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_4521451_4522396_4522574_4523436_4523527_4523961_4524094_4524343_4524386_4524814_4524902_4525068_4525082_4525303
transcript_80241.known	chr7	+	651	2	FSM	ENSMUSG00000085725.3	ENSMUST00000205662.2	651	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAAGCTTGTCTTGGTTCC	3033	False	NA	NA	False	NA	NA	NA	4529632	4533574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_4530006_4533296
transcript_80242.nic	chr7	-	984	3	ISM	ENSMUSG00000004961.8	ENSMUST00000065957.7	1750	8	4425	0	4425	0	3prime_fragment	FALSE	canonical	2	3	junction_1	1	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGGCTCCAGTGCTCCT	2388	False	NA	NA	False	AATAAA	-18	NA	4545141	4542763	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_4543298_4544078_4544213_4544825
transcript_80243.known	chr7	+	1295	1	FSM	ENSMUSG00000108477.2	ENSMUST00000205812.2	1295	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGCTCTGCTCCCTGTCTCC	2997	False	NA	NA	False	NA	NA	NA	4661658	4662953	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_4661700_4663000
transcript_80244.known	chr7	-	3862	24	FSM	ENSMUSG00000052296.8	ENSMUST00000064099.8	3862	24	0	0	0	0	multi-exon	TRUE	canonical	3	244	junction_23	30.5598053220771	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGCTGTGGGACTGTGA	NA	False	NA	-3	True	AATAAA	-17	NA	4662018	4634493	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_4635244_4635339_4635397_4635487_4635599_4636057_4636140_4636271_4636343_4636467_4636601_4636692_4636824_4638963_4639137_4639214_4639273_4642512_4642611_4642689_4642780_4642891_4642978_4643071_4643188_4643307_4643373_4644044_4644180_4644263_4644417_4644503_4644667_4644926_4645041_4645134_4645248_4645999_4646066_4646147_4646286_4646367_4646555_4649706_4649940_4661479
transcript_80249.nic	chr7	-	1754	8	NIC	ENSMUSG00000063802.6	novel	1593	8	NA	NA	-164	0	combination_of_known_junctions	FALSE	canonical	3	210	junction_7	116.504882966775	1396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTATGCTGTCTTGCATT	NA	False	NA	-7	True	AATAAA	-16	NA	4688231	4663519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_4663845_4666379_4666492_4667518_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270_4687566_4687892
transcript_80250.known	chr7	-	1593	8	FSM	ENSMUSG00000063802.6	ENSMUST00000079970.6	1593	8	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_7	148.934720667842	993	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTATGCTGTCTTGCATT	NA	False	NA	-7	True	AATAAA	-16	NA	4688067	4663519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_4663845_4666379_4666492_4667518_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270_4687569_4687892
transcript_8026.known	chr10	+	2350	9	FSM	ENSMUSG00000032763.12	ENSMUST00000220430.2	2350	9	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_8	18.9402844487616	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAACAAAATAAACAAGGAA	5890	False	NA	NA	False	NA	NA	NA	78410824	78418082	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889
transcript_80260.known	chr7	-	262	3	FSM	ENSMUSG00000063802.6	ENSMUST00000206708.2	262	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	273.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTCATTGGTGTTTTAC	6776	False	NA	NA	False	TATAAA	-13	NA	4667768	4667173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_4667272_4667518_4667616_4667701
transcript_80261.known	chr7	-	933	6	FSM	ENSMUSG00000063802.6	ENSMUST00000205952.2	933	6	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_5	178.180358064518	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCCCTTGTGAGGACAGA	NA	False	NA	NA	False	NA	NA	NA	4687993	4667580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270_4687482_4687892
transcript_80262.known	chr7	-	813	4	FSM	ENSMUSG00000063802.6	ENSMUST00000206306.2	813	4	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_3	141.035062622345	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGTTCCCGGATTTCA	NA	False	NA	NA	False	NA	NA	NA	4687980	4680705	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_4680931_4684842_4685048_4687270_4687566_4687892
transcript_80268.known	chr7	+	1216	10	FSM	ENSMUSG00000035390.17	ENSMUST00000206024.2	1216	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	4.39696865275764	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTCTTCATTACGTAGA	3309	False	NA	NA	False	ATTAAA	-18	NA	4694078	4708425	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_4694215_4695652_4695748_4695878_4695965_4697672_4697814_4701698_4701816_4701917_4701952_4702036_4702106_4707126_4707274_4707682_4707715_4708066
transcript_80269.known	chr7	+	2189	9	FSM	ENSMUSG00000059851.16	ENSMUST00000098853.9	2189	9	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	214.33585648463	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGTTTTTTTTTTTTTTT	583	False	NA	16	True	ATTAAA	-17	NA	4743113	4750513	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_4743181_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
transcript_8027.known	chr10	+	472	3	FSM	ENSMUSG00000032763.12	ENSMUST00000218061.2	472	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	90.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCTGGTGGCCTGTGAGA	5245	False	NA	NA	False	NA	NA	NA	78410179	78412519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_78410403_78410920_78411066_78412415
transcript_80270.nnic	chr7	+	2344	9	NNC	ENSMUSG00000059851.16	novel	2177	9	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_6	226.026789064925	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGTTTTTTTTTTTTTTT	579	False	NA	16	True	ATTAAA	-17	NA	4743109	4750513	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_4743239_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748707_4748938_4749075_4749261_4749375
transcript_80271.known	chr7	+	2177	9	FSM	ENSMUSG00000059851.16	ENSMUST00000108583.9	2177	9	0	0	0	0	multi-exon	FALSE	canonical	3	456	junction_1	88.3026578025826	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGTTTTTTTTTTTTTTT	653	False	NA	16	True	ATTAAA	-17	NA	4743183	4750513	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_4743239_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
transcript_80275.known	chr7	+	2774	9	FSM	ENSMUSG00000059851.16	ENSMUST00000108582.10	2774	9	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	203.174647778703	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGTTTTTTTTTTTTTTT	635	False	NA	16	True	ATTAAA	-17	NA	4743165	4750513	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_4743818_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
transcript_8028.known	chr10	+	228	3	FSM	ENSMUSG00000032763.12	ENSMUST00000218763.2	228	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	96.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGGTGTACGCTTTGTCT	5868	False	NA	NA	False	NA	NA	NA	78410802	78412471	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_78410830_78410920_78411066_78412415
transcript_8029.known	chr10	-	3288	8	FSM	ENSMUSG00000032714.7	ENSMUST00000040580.7	3288	8	0	0	0	0	multi-exon	TRUE	canonical	3	17	junction_5	4.14039335605413	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTGACTGAGTCCTTGG	NA	False	NA	1	True	AATAAA	-15	NA	78427798	78420336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_78421746_78421923_78422150_78422792_78422954_78423164_78423292_78424540_78424756_78424934_78425580_78425735_78426078_78427635
transcript_80290.known	chr7	-	465	4	FSM	ENSMUSG00000051811.15	ENSMUST00000182048.2	465	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_3	332.524017511852	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGGTCACCCCCTCCCT	NA	False	NA	-72	True	NA	NA	NA	4756037	4754853	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_4754975_4755059_4755161_4755722_4755880_4755951
transcript_803.nnic	chr1	-	570	3	NNC	ENSMUSG00000097797.7	novel	1193	3	NA	NA	-67	34768	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGGTTTTGTTGGTTGG	NA	False	NA	NA	False	AGTAAA	-16	NA	7468160	7384861	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_-_7385157_7452250_7452307_7467941
transcript_80303.known	chr7	-	585	3	FSM	ENSMUSG00000051811.15	ENSMUST00000182111.8	585	3	0	0	0	0	multi-exon	FALSE	canonical	3	648	junction_1	77.5	841	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	-9	True	AATAAA	-17	NA	4756022	4754790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_4754975_4755059_4755161_4755722
transcript_80304.known	chr7	-	435	4	FSM	ENSMUSG00000051811.15	ENSMUST00000184143.8	435	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	378.537830195198	1478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	-9	True	AATAAA	-17	NA	4756022	4754790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_4754975_4755106_4755161_4755722_4755849_4755951
transcript_80305.known	chr7	-	423	4	FSM	ENSMUSG00000051811.15	ENSMUST00000182738.8	423	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	362.510076488303	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATATTTGTTTCTTTTCTCG	NA	False	NA	-11	True	AATAAA	-15	NA	4756008	4754792	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_4754975_4755102_4755161_4755722_4755849_4755951
transcript_80306.known	chr7	-	490	4	FSM	ENSMUSG00000051811.15	ENSMUST00000183334.8	490	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	338.542299999408	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATATTTGTTTCTTTTCTC	NA	False	NA	-12	True	AATAAA	-14	NA	4756022	4754793	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_4754975_4755059_4755172_4755722_4755849_4755951
transcript_80307.known	chr7	-	519	2	FSM	ENSMUSG00000051811.15	ENSMUST00000182272.2	519	2	0	0	0	0	multi-exon	FALSE	canonical	3	648	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTTGCACTTGAGCGCT	NA	False	NA	NA	False	NA	NA	NA	4755527	4754923	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_4754975_4755059
transcript_80308.known	chr7	-	1375	2	FSM	ENSMUSG00000030431.9	ENSMUST00000168578.3	1375	2	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCACCTCCAGTTCCTTC	162	False	NA	NA	False	NA	NA	NA	4792655	4787555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_4788279_4792003
transcript_80316.known	chr7	-	1238	4	FSM	ENSMUSG00000060860.9	ENSMUST00000079496.9	1238	4	0	0	0	0	multi-exon	FALSE	canonical	3	9878	junction_1	292.246851518066	571	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTATGCCTGAAGTGTC	NA	False	NA	-25	True	AATAAA	-15	NA	4815589	4811012	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_4811484_4813420_4813612_4814407_4814556_4815161
transcript_80319.known	chr7	+	772	4	FSM	ENSMUSG00000030432.13	ENSMUST00000078432.5	772	4	0	0	0	0	multi-exon	FALSE	canonical	3	6459	junction_1	109.515092820832	12687	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGAGTCCACTGACTTC	2809	False	NA	-19	True	NA	NA	NA	4795988	4797525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_4796409_4796501_4796626_4797062_4797182_4797416
transcript_8032.known	chr10	-	4229	6	FSM	ENSMUSG00000060301.7	ENSMUST00000039271.7	4229	6	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	2.33238075793812	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTCAGGATATTTTATAA	NA	False	NA	0	True	NA	NA	NA	78933434	78900207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_78903886_78904467_78904563_78924120_78924214_78928245_78928339_78930264_78930392_78933291
transcript_80320.known	chr7	+	1106	5	FSM	ENSMUSG00000030432.13	ENSMUST00000032597.12	1106	5	0	0	0	0	multi-exon	FALSE	canonical	3	3938	junction_1	1160.31525888441	57682	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCATGTCCTTTATATT	2693	False	NA	NA	False	NA	NA	NA	4795872	4798065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_4795998_4796319_4796409_4796501_4796626_4797062_4797182_4797416
transcript_80321.known	chr7	+	312	3	FSM	ENSMUSG00000030432.13	ENSMUST00000126794.2	312	3	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_1	3317	5881	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTGCTCATTGAGCT	3412	False	NA	17	True	AATAAA	-32	NA	4796591	4797561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_4796626_4797048_4797182_4797416
transcript_80323.nnic	chr7	+	371	3	Antisense	novelGene_ENSMUSG00000052605.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	1	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGGTCCCAGTTGTGAC	NA	False	NA	NA	False	CATAAA	-15	NA	4828582	4847984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr7_+_4828645_4844889_4844996_4847781
transcript_80326.known	chr7	-	1080	6	FSM	ENSMUSG00000052605.13	ENSMUST00000064547.13	1080	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	2.13541565040626	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACCGAACCATTATTGGGT	NA	False	NA	NA	False	AATAAA	-16	NA	4869192	4847957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_4848365_4852448_4852567_4853753_4853825_4854022_4854233_4854391_4854533_4869059
transcript_80327.nnic	chr7	+	977	7	NNC	ENSMUSG00000086784.3	novel	2244	6	NA	NA	-133	-1256	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	0.763762615825973	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTATTGCGTTTGTGGGGT	2899	False	NA	21	True	AGTAAA	-25	NA	4880018	4898716	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_4880193_4894182_4894330_4894456_4894667_4894829_4894901_4894992_4895111_4898315_4898473_4898616
transcript_80329.nnic	chr7	+	237	2	NNC	ENSMUSG00000086784.3	novel	2244	6	NA	NA	-126	-1256	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTATTGCGTTTGTGGGGT	2906	False	NA	21	True	AGTAAA	-25	NA	4880025	4898716	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_4880155_4898608
transcript_8033.known	chr10	-	643	6	FSM	ENSMUSG00000060301.7	ENSMUST00000218854.2	643	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.66606055596467	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCCCTGGAAGTCCCAA	NA	False	NA	NA	False	NA	NA	NA	78933372	78903647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_78903886_78904551_78904563_78924120_78924214_78928245_78928339_78930264_78930392_78933291
transcript_80330.known	chr7	+	2244	6	FSM	ENSMUSG00000086784.3	ENSMUST00000125249.3	2244	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	0.8	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTCTGTGTGGTATTTG	3032	False	NA	9	True	NA	NA	NA	4880151	4899972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_4880193_4894182_4894330_4894456_4894667_4894829_4894901_4894992_4895111_4898315
transcript_80333.known	chr7	-	1279	2	FSM	ENSMUSG00000110221.2	ENSMUST00000210663.2	1279	2	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAGAGAGCTTCAGACAGC	2896	False	NA	NA	False	NA	NA	NA	4909515	4901448	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_4902496_4909283
transcript_80337.known	chr7	+	1612	3	FSM	ENSMUSG00000035285.7	ENSMUST00000047309.6	1612	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTCTCCTGTCTGATG	2379	False	NA	17	True	AATAAA	-17	NA	4925249	4928005	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_4925639_4926209_4926329_4926901
transcript_80339.known	chr7	+	1415	3	FSM	ENSMUSG00000035285.7	ENSMUST00000207687.2	1415	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTGTGCCTGTCTCCTGT	31	True	NA	11	True	AATAAA	-11	NA	4925866	4927999	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_4926062_4926206_4926329_4926901
transcript_8034.nic	chr10	-	1494	5	NIC	ENSMUSG00000052151.13	novel	1566	6	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_4	25.791229129299	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCCATGCATGTTGATTT	NA	False	NA	-5	True	TATAAA	-17	NA	79369627	79362268	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_-_79363083_79363283_79363461_79363648_79363707_79366331_79366607_79369457
transcript_80340.known	chr7	-	856	2	FSM	ENSMUSG00000051550.11	ENSMUST00000160225.2	856	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCGAGTGAGGCTGTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	4999157	4995850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_4996552_4999002
transcript_8035.known	chr10	-	825	5	FSM	ENSMUSG00000052151.13	ENSMUST00000218241.2	825	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	27.078589328102	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATCCCAGAGTCCTGGCT	NA	False	NA	NA	False	NA	NA	NA	79369591	79362860	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_79363083_79363283_79363461_79363648_79363707_79366331_79366607_79369498
transcript_80350.nnic	chr7	+	1356	6	NNC	ENSMUSG00000035228.16	novel	1534	5	NA	NA	-51	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	6.06630035524124	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGCCCCAGGTCTTACTA	9	True	NA	NA	False	AATAAA	-1	NA	5059672	5063784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_5059797_5060497_5060659_5060797_5060903_5060990_5061168_5062494_5062705_5063205
transcript_80354.nnic	chr7	-	2548	4	NNC	ENSMUSG00000061374.15	novel	2637	3	NA	NA	-69	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	181.586220720504	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTCTTGTTTTTTGAT	4203	False	NA	-4	True	AATAAA	-14	NA	5016306	5010057	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_5010959_5011001_5012205_5015676_5016022_5016207
transcript_80356.known	chr7	-	2653	3	FSM	ENSMUSG00000061374.15	ENSMUST00000165320.3	2653	3	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	217.5	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTCTTGTTTTTTGAT	2813	False	NA	-4	True	AATAAA	-14	NA	5017696	5010057	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_5012205_5015676_5016022_5017535
transcript_80357.nnic	chr7	-	2581	4	NNC	ENSMUSG00000061374.15	novel	2546	3	NA	NA	-59	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	182.145241191992	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTCTTGTTTTTTGAT	2754	False	NA	-4	True	AATAAA	-14	NA	5017755	5010057	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_5010959_5011001_5012205_5015676_5016022_5017623
transcript_80362.known	chr7	-	2306	3	FSM	ENSMUSG00000061374.15	ENSMUST00000208944.2	2306	3	0	0	0	0	multi-exon	FALSE	canonical	3	199	junction_2	122.5	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCTGTGACCTGGTGGAG	4272	False	NA	NA	False	NA	NA	NA	5016237	5010273	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_5012205_5015676_5016022_5016207
transcript_80363.known	chr7	-	2178	3	FSM	ENSMUSG00000061374.15	ENSMUST00000207030.2	2178	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	219.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTACTGAAAGAAGATCAG	3241	False	NA	NA	False	NA	NA	NA	5017268	5010557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_5012205_5015676_5016022_5017082
transcript_80364.known	chr7	-	2637	3	FSM	ENSMUSG00000061374.15	ENSMUST00000167804.9	2637	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	221	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTCTTGTTTTTTGAT	3257	False	NA	-4	True	AATAAA	-14	NA	5017252	5010057	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_5012205_5015676_5016022_5017107
transcript_80366.known	chr7	-	2546	3	FSM	ENSMUSG00000061374.15	ENSMUST00000077385.15	2546	3	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_2	130	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTCTTGTTTTTTGAT	2832	False	NA	-4	True	AATAAA	-14	NA	5017677	5010057	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_5012205_5015676_5016022_5017623
transcript_80368.known	chr7	+	1142	2	FSM	ENSMUSG00000051184.8	ENSMUST00000086349.5	1142	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCACTGTGTGTTCAGTC	2940	False	NA	5	True	AATAAA	-15	NA	5018468	5021486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_5018560_5020435
transcript_80369.known	chr7	+	93	2	FSM	ENSMUSG00000074405.9	ENSMUST00000207362.2	93	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGCATTAGCCTGAGTGAA	2965	False	NA	NA	False	NA	NA	NA	5023585	5035785	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_5023655_5035761
transcript_8037.known	chr10	-	1654	6	FSM	ENSMUSG00000052151.13	ENSMUST00000063879.13	1654	6	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_5	6.89927532426414	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCATGTTGATTTTTCAA	NA	False	NA	0	True	TATAAA	-22	NA	79369630	79362263	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_79363083_79363283_79363461_79363648_79363707_79366331_79366607_79366710_79366863_79369457
transcript_80370.known	chr7	+	7503	3	FSM	ENSMUSG00000074405.9	ENSMUST00000076251.7	7503	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTCCTCTGAAGTCCACT	2754	False	NA	NA	False	NA	NA	NA	5023374	5039767	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_5023655_5031989_5035207_5035761
transcript_80371.nic	chr7	+	972	2	ISM	ENSMUSG00000074405.9	ENSMUST00000085427.6	2751	3	10200	-86	1446	86	3prime_fragment	FALSE	canonical	3	4	junction_1	0	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTGGCTAATCTTGAACT	NA	False	NA	2	True	NA	NA	NA	5033768	5036223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_5034279_5035761
transcript_80372.known	chr7	-	2153	2	FSM	ENSMUSG00000043290.7	ENSMUST00000062428.5	2153	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGAGTGTCTTGGTTTTTTC	NA	False	NA	NA	False	AATAAA	-41	NA	5041445	5037437	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_5039479_5041333
transcript_80373.known	chr7	+	1096	2	FSM	ENSMUSG00000055633.7	ENSMUST00000069324.7	1096	2	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	0	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGGGTTCTTACTTGCA	2919	False	NA	4	True	AATAAA	-15	NA	5054536	5056722	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_5054714_5055803
transcript_80374.known	chr7	-	741	2	FSM	ENSMUSG00000061374.15	ENSMUST00000209060.2	741	2	0	0	0	0	multi-exon	FALSE	canonical	3	199	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGGATTCCGAGACTCCA	3866	False	NA	NA	False	NA	NA	NA	5016643	5015716	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_5016022_5016207
transcript_80377.nic	chr7	-	894	2	ISM	ENSMUSG00000061374.15	ENSMUST00000077385.15	2546	3	-78	5202	-59	-10	5prime_fragment	FALSE	canonical	3	184	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAAGAAAGAAAGAA	2754	False	NA	NA	False	NA	NA	NA	5017755	5015259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_5016022_5017623
transcript_80378.known	chr7	-	889	2	FSM	ENSMUSG00000061374.15	ENSMUST00000207691.2	889	2	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAAAGAG	2857	False	NA	NA	False	NA	NA	NA	5017652	5015249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_5016022_5017535
transcript_80379.known	chr7	+	1534	5	FSM	ENSMUSG00000035228.16	ENSMUST00000045543.8	1534	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	4.54835134966506	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGCCCCAGGTCTTACTA	532	False	NA	NA	False	AATAAA	-1	NA	5060195	5063784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_5060659_5060797_5060903_5060990_5061168_5062494_5062705_5063205
transcript_8038.known	chr10	-	1609	6	FSM	ENSMUSG00000052151.13	ENSMUST00000163602.9	1609	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_5	21.5462293684997	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCATGTTGATTTTTCAA	NA	False	NA	0	True	TATAAA	-22	NA	79369626	79362263	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_79363083_79363283_79363461_79363648_79363707_79366331_79366607_79366710_79366863_79369498
transcript_80387.known	chr7	+	2088	12	FSM	ENSMUSG00000030435.17	ENSMUST00000209099.2	2088	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	525.567461915969	2177	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATGGATCCTCATCTGT	35	False	NA	28	True	ATTAAA	-18	NA	5065243	5082932	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_5065336_5069401_5069538_5070208_5070254_5070542_5070647_5071030_5071183_5072442_5072560_5073360_5073500_5077579_5077660_5077733_5077857_5078139_5078239_5078466_5078716_5082180
transcript_80388.known	chr7	+	2565	12	FSM	ENSMUSG00000035203.17	ENSMUST00000098845.10	2565	12	0	0	0	0	multi-exon	TRUE	canonical	3	82	junction_1	31.9772646507711	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGGCTCCCTTAAATTC	1308	False	NA	21	True	AATAAA	-15	NA	5083233	5101177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_5083477_5085016_5085121_5086661_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098889_5098974_5100152_5100411_5100570
transcript_80393.known	chr7	+	2334	11	FSM	ENSMUSG00000035203.17	ENSMUST00000045277.7	2334	11	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	46.9447547655753	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGTGGCTCCCTTAAAT	1366	False	NA	19	True	AATAAA	-13	NA	5083291	5101175	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_5083477_5086728_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098889_5098974_5100152_5100411_5100570
transcript_80395.known	chr7	+	2127	10	FSM	ENSMUSG00000035203.17	ENSMUST00000208634.2	2127	10	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_7	25.486864203224	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGTGGCTCCCTTAAAT	2819	False	NA	19	True	AATAAA	-13	NA	5086753	5101175	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098886_5098974_5100152_5100411_5100570
transcript_80396.known	chr7	-	1013	1	FSM	ENSMUSG00000083649.6	ENSMUST00000147835.4	1013	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATCTTCTAAATATCTT	469	False	NA	NA	False	AATAAA	-18	NA	5128949	5127936	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_5127900_5128900
transcript_8040.known	chr10	-	2676	14	FSM	ENSMUSG00000042570.15	ENSMUST00000165028.8	2676	14	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_13	38.1023225308973	334	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTGTCTCATGGATTCCA	NA	False	NA	-3	True	ATTAAA	-16	NA	79391033	79376078	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_79377034_79377347_79377769_79378238_79378316_79378430_79378556_79380353_79380449_79380522_79380605_79380878_79381031_79383488_79383559_79384187_79384277_79384619_79384744_79385017_79385144_79385370_79385514_79386149_79386241_79390907
transcript_80408.known	chr7	-	535	3	FSM	ENSMUSG00000046792.9	ENSMUST00000208746.2	535	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	44	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTGCTTCAGTGTTCCTT	NA	False	NA	NA	False	AATAAA	-15	NA	6158433	6145401	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_6145619_6146060_6146150_6158204
transcript_80414.known	chr7	-	1897	3	FSM	ENSMUSG00000046792.9	ENSMUST00000094870.3	1897	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	59	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCACTGCCTGTTTCTTGA	9626	False	NA	-1	True	AATAAA	-20	NA	6158970	6134489	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_6136171_6146060_6146150_6158843
transcript_80415.known	chr7	-	576	3	FSM	ENSMUSG00000046792.9	ENSMUST00000207628.2	576	3	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	37	499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAACTCGAAGTTCATGC	9600	False	NA	-10	True	AATAAA	-16	NA	6158996	6145284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_6145619_6146060_6146150_6158843
transcript_80416.known	chr7	-	880	2	FSM	ENSMUSG00000046792.9	ENSMUST00000207957.2	880	2	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_1	0	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCTCCACCTGTACACTG	9671	False	NA	-77	True	NA	NA	NA	6158925	6145351	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_6146150_6158843
transcript_80417.known	chr7	+	1648	5	FSM	ENSMUSG00000044876.16	ENSMUST00000108566.8	1648	5	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_2	66.2740522376593	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGACTCTCCGGTGTTG	2967	False	NA	15	True	AATAAA	-24	NA	6175511	6193420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_6175574_6176980_6177101_6186860_6187202_6191132_6191242_6192404
transcript_80418.known	chr7	+	5104	5	FSM	ENSMUSG00000044876.16	ENSMUST00000108567.9	5104	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	139.327626478025	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTTGCCTTAGTCATGG	2936	False	NA	NA	False	NA	NA	NA	6175480	6196810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_6175537_6176980_6177101_6186788_6187202_6191132_6191242_6192404
transcript_80423.known	chr7	+	2467	4	FSM	ENSMUSG00000044876.16	ENSMUST00000054680.12	2467	4	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	90.9004339312464	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCCGGTTCTCGTTCTTA	2956	False	NA	NA	False	NA	NA	NA	6175500	6194348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_6175574_6186860_6187202_6191132_6191242_6192404
transcript_80424.known	chr7	+	701	3	FSM	ENSMUSG00000044876.16	ENSMUST00000149540.3	701	3	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_2	5.5	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTCTAGGTGAAGTCTGC	3018	False	NA	NA	False	AATAAA	-12	NA	6175562	6187430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_6175574_6176980_6177101_6186860
transcript_80427.nic	chr7	+	648	2	ISM	ENSMUSG00000044876.16	ENSMUST00000054680.12	2467	4	1	6912	1	6	5prime_fragment	FALSE	canonical	3	89	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGAAGTCTGCTTTGCC	2957	False	NA	NA	False	AATAAA	-18	NA	6175501	6187436	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_6175574_6186860
transcript_80428.known	chr7	+	650	6	FSM	ENSMUSG00000034660.9	ENSMUST00000037553.6	650	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.8	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCCCCCACCCACACCCA	2787	False	NA	NA	False	NA	NA	NA	6200088	6219136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_6200352_6205798_6205884_6211464_6211514_6214302_6214384_6216835_6216914_6219042
transcript_80430.known	chr7	+	1980	6	FSM	ENSMUSG00000058028.15	ENSMUST00000072662.12	1980	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	2.49799919935936	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCATTGATTGACTTATT	3080	False	NA	NA	False	ATTAAA	-22	NA	6225276	6242422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_6225336_6227584_6227759_6233070_6233538_6234335_6234537_6236813_6236968_6241497
transcript_80431.nic	chr7	+	1903	5	NIC	ENSMUSG00000058028.15	novel	1980	6	NA	NA	-97	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	3.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCATTGATTGACTTATT	2983	False	NA	NA	False	ATTAAA	-22	NA	6225179	6242422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_6225336_6233070_6233538_6234335_6234537_6236813_6236968_6241497
transcript_80433.nic	chr7	+	979	13	ISM	ENSMUSG00000053367.16	ENSMUST00000121024.8	957	16	6399	0	496	0	3prime_fragment	FALSE	canonical	0	0	junction_1	29.1131652159103	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTTGATTCAGTGCGTA	1785	False	NA	6	True	AATAAA	-21	NA	6262107	6284858	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_6262346_6263534_6263544_6266905_6266933_6269287_6269345_6269828_6269847_6271800_6271807_6272881_6272891_6274395_6274405_6275974_6276002_6277345_6277373_6280418_6280541_6282412_6282451_6284466
transcript_80442.nic	chr7	+	1100	12	ISM	ENSMUSG00000053367.16	ENSMUST00000121024.8	957	16	7467	0	-359	0	3prime_fragment	FALSE	canonical	0	0	junction_4	28.8595916994307	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTTGATTCAGTGCGTA	2853	False	NA	6	True	AATAAA	-21	NA	6263175	6284858	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_6263544_6266905_6266933_6269287_6269345_6269828_6269847_6271800_6271807_6272881_6272891_6274395_6274405_6275974_6276002_6277345_6277373_6280418_6280541_6282412_6282451_6284466
transcript_80452.known	chr7	+	684	11	FSM	ENSMUSG00000053367.16	ENSMUST00000155248.2	684	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	31.3304963254654	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTTGATTCAGTGCGTA	3212	False	NA	6	True	AATAAA	-21	NA	6263534	6284858	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_6263544_6266905_6266933_6269828_6269847_6271800_6271807_6272881_6272891_6274395_6274405_6275974_6276002_6277345_6277373_6280418_6280541_6282412_6282451_6284466
transcript_80469.nnic	chr7	+	906	7	NIC	ENSMUSG00000053367.16	novel	684	11	NA	NA	-282	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	31.6438514301488	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTTGATTCAGTGCGTA	2930	False	NA	6	True	AATAAA	-21	NA	6263252	6284858	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_6263544_6274395_6274405_6275974_6276002_6277345_6277373_6280418_6280541_6282412_6282451_6284466
transcript_8047.known	chr10	+	1436	5	FSM	ENSMUSG00000020310.10	ENSMUST00000020554.8	1436	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	3.08220700148449	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGGCATATTCTTTCG	3155	False	NA	NA	False	AATAAA	-14	NA	79500392	79504371	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79500502_79500745_79501013_79501264_79501592_79502172_79502605_79504070
transcript_80472.nic	chr7	-	338	2	ISM	ENSMUSG00000108949.2	ENSMUST00000208604.2	317	3	-69	377	-69	-377	5prime_fragment	FALSE	canonical	2	3	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATATGGAGTACTCAGGTT	NA	False	NA	NA	False	NA	NA	NA	6286678	6286214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_6286420_6286545
transcript_8048.known	chr10	+	944	4	FSM	ENSMUSG00000020310.10	ENSMUST00000217748.2	944	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	3.29983164553722	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGCCCAGAGCTAAATAAAA	3183	False	NA	NA	False	NA	NA	NA	79500420	79504339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79500502_79500745_79501013_79501264_79501592_79504070
transcript_80480.known	chr7	+	596	5	FSM	ENSMUSG00000054893.16	ENSMUST00000153840.2	596	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	21.4752764825042	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGCGTGTCTCTCAGGTAT	2986	False	NA	NA	False	NA	NA	NA	6289591	6303958	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_6289654_6292356_6292437_6293534_6293662_6296847_6296941_6303724
transcript_80481.known	chr7	+	3672	5	FSM	ENSMUSG00000054893.16	ENSMUST00000086327.12	3672	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	11.1214882097676	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCCAACTGGAGGTGTCCC	2972	False	NA	NA	False	NA	NA	NA	6289577	6310882	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_6289654_6292356_6292437_6293534_6293662_6296847_6296941_6307586
transcript_80484.known	chr7	+	3498	5	FSM	ENSMUSG00000054893.16	ENSMUST00000108562.2	3498	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	14.0245320777557	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTTCTTTTACATGTTCT	4261	False	NA	NA	False	AATAAA	-37	NA	6290866	6310681	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_6290970_6292356_6292437_6293534_6293662_6296847_6296941_6307586
transcript_80485.known	chr7	-	2550	5	FSM	ENSMUSG00000030443.17	ENSMUST00000062765.14	2550	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	5.61248608016091	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTGATTATTTTAATCAT	NA	False	NA	NA	False	AATAAA	-22	NA	6334284	6318658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_6320779_6326645_6326742_6328451_6328579_6332253_6332316_6334139
transcript_80486.known	chr7	-	577	5	FSM	ENSMUSG00000030443.17	ENSMUST00000135435.2	577	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	9.23309265630969	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCTCCTGCATTGACCTT	NA	False	NA	NA	False	NA	NA	NA	6334203	6326194	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_6326423_6326645_6326742_6328451_6328579_6332253_6332316_6334139
transcript_80487.nic	chr7	-	466	3	ISM	ENSMUSG00000030443.17	ENSMUST00000135435.2	577	5	-121	2165	-40	-1711	5prime_fragment	FALSE	canonical	3	27	junction_2	0.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATATTCAACTCTATCCC	NA	False	NA	NA	False	ATTAAA	-11	NA	6334324	6328359	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_6328579_6332253_6332316_6334139
transcript_80490.known	chr7	+	2950	5	FSM	ENSMUSG00000109398.3	ENSMUST00000207173.3	2950	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	2.6809513236909	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGCATGGTGGTGCATG	3012	False	NA	NA	False	AATGAA	-40	NA	6346757	6358955	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_6346862_6349343_6349432_6351435_6351563_6352716_6352813_6356420
transcript_80491.known	chr7	-	512	2	FSM	ENSMUSG00000109080.2	ENSMUST00000208218.2	512	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGCAAATGTTCCTAGAAT	NA	False	NA	NA	False	AATAAA	-20	NA	6347004	6345993	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_6346257_6346755
transcript_80492.known	chr7	+	1140	2	FSM	ENSMUSG00000109398.3	ENSMUST00000208865.2	1140	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	3022	False	NA	NA	False	AAAACA	-32	NA	6346767	6350389	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_6346862_6349343
transcript_80493.known	chr7	+	609	6	FSM	ENSMUSG00000055150.16	ENSMUST00000208763.2	609	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	9.32952303175248	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGGATAGACAGATGAGT	3006	False	NA	NA	False	NA	NA	NA	6366330	6381339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_6366347_6373957_6374105_6374304_6374396_6376125_6376253_6378517_6378614_6381207
transcript_80495.known	chr7	+	3883	5	FSM	ENSMUSG00000055150.16	ENSMUST00000207347.2	3883	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	5.71729831301464	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGTGGTGACAATGCTG	2954	False	NA	NA	False	NA	NA	NA	6366278	6384708	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_6366347_6374304_6374396_6376125_6376253_6378517_6378614_6381207
transcript_805.known	chr1	-	256	3	FSM	ENSMUSG00000097797.7	ENSMUST00000193106.6	256	3	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	3	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGGGTCATGTATTG	NA	False	NA	NA	False	NA	NA	NA	7468019	7446109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_7446232_7452250_7452307_7467941
transcript_8050.known	chr10	+	1101	2	FSM	ENSMUSG00000020308.8	ENSMUST00000239401.2	1101	2	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_1	0	772	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCCTTGCTGGTCACCT	8006	False	NA	10	True	AATAAA	-12	NA	79505243	79511960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79505618_79511233
transcript_80502.nic	chr7	+	1368	4	ISM	ENSMUSG00000055150.16	ENSMUST00000207347.2	3883	5	-170	5279	-170	-1910	5prime_fragment	FALSE	canonical	2	8	junction_1	6.34209919681348	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCGTTCTCCTCATTGTCC	2784	False	NA	NA	False	NA	NA	NA	6366108	6379429	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_6366347_6374304_6374396_6376125_6376253_6378517
transcript_80503.known	chr7	+	2965	4	FSM	ENSMUSG00000055150.16	ENSMUST00000208390.2	2965	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	2.49443825784929	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAATAAATAAATAAAAGT	2984	False	NA	NA	False	NA	NA	NA	6366308	6383916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_6366347_6374304_6374396_6376125_6376253_6381207
transcript_80506.known	chr7	+	4675	4	FSM	ENSMUSG00000055150.16	ENSMUST00000207314.2	4675	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	3.39934634239519	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCCGCTTCCCCGTTTCTC	3054	False	NA	NA	False	NA	NA	NA	6366378	6385604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_6366439_6374304_6374396_6376125_6376253_6381207
transcript_80508.nnic	chr7	+	855	3	NNC	ENSMUSG00000055150.16	novel	4675	4	NA	NA	8469	615	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGTTCCGGAGGAACTGCCT	NA	False	NA	NA	False	NA	NA	NA	6382831	6386219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_6383347_6385601_6385711_6385988
transcript_80509.known	chr7	+	4447	7	FSM	ENSMUSG00000062861.9	ENSMUST00000081022.9	4447	7	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	4.21966296705739	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTTTTGTGTGTGTGTG	2959	False	NA	NA	False	NA	NA	NA	6386293	6399914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_6386601_6387173_6387266_6392431_6392559_6392752_6392849_6393398_6393560_6395180_6395296_6396365
transcript_8051.nnic	chr10	+	851	2	NNC	ENSMUSG00000020308.8	novel	368	2	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_1	0	174	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCTTGCTGGTCACCTG	8471	False	NA	11	True	AATAAA	-13	NA	79505708	79511961	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_79505832_79511233
transcript_80511.known	chr7	+	664	5	FSM	ENSMUSG00000093536.8	ENSMUST00000161855.8	664	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.11803398874989	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTAGAAACCAGGAATGGAT	3000	False	NA	NA	False	NA	NA	NA	6401713	6432449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_6401762_6402782_6402915_6427621_6427858_6430077_6430155_6432278
transcript_80512.nnic	chr7	+	676	3	NNC	ENSMUSG00000093536.8	novel	453	3	NA	NA	-15	-8248	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTCATGGTGTCTGT	2985	False	NA	NA	False	NA	NA	NA	6401698	6403294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_6401762_6402548_6402650_6402782
transcript_80515.known	chr7	-	1158	5	FSM	ENSMUSG00000108113.3	ENSMUST00000203572.3	1158	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.433012701892219	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTATGTTTTAGGGGACTA	NA	False	NA	NA	False	NA	NA	NA	6665367	6654746	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_6655572_6657890_6657979_6661145_6661246_6661857_6661947_6665311
transcript_80517.known	chr7	-	8694	9	FSM	ENSMUSG00000002265.18	ENSMUST00000051209.11	8694	9	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_3	8.98262211161084	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCAGTCTCTTCCTTTGT	NA	False	NA	NA	False	AATAAA	-23	NA	6733420	6706890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_6714731_6714849_6714943_6715671_6715775_6719052_6719157_6720111_6720196_6720797_6720888_6721424_6721556_6729488_6729574_6733256
transcript_80519.known	chr7	-	4816	2	FSM	ENSMUSG00000002265.18	ENSMUST00000155910.3	4816	2	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAAGTAAAACAAAG	NA	False	NA	NA	False	TATAAA	-11	NA	6733430	6724931	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_6729574_6733256
transcript_8052.known	chr10	+	278	2	FSM	ENSMUSG00000020308.8	ENSMUST00000220175.2	278	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCGGCCGCAAGAAGAAACC	8509	False	NA	NA	False	NA	NA	NA	79505746	79511282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79505976_79511233
transcript_80526.known	chr7	+	2801	5	FSM	ENSMUSG00000109176.2	ENSMUST00000208781.2	2801	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	13.3111795119741	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATAGTGGAGCTG	3154	False	NA	30	True	AATAAA	-41	NA	6980244	6994086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_6980472_6984231_6984357_6987998_6988143_6989101_6989202_6991881
transcript_80530.nnic	chr7	+	1362	4	NNC	ENSMUSG00000109176.2	novel	2801	5	NA	NA	-191	-4508	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_3	6.84754619472471	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTACATCCTTAAAGTTC	2963	False	NA	NA	False	NA	NA	NA	6980053	6988759	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_6980472_6984231_6984357_6985317_6985372_6987994
transcript_80532.nnic	chr7	+	1309	3	NNC	ENSMUSG00000109176.2	novel	2801	5	NA	NA	-191	-4507	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTACATCCTTAAAGTTCT	2963	False	NA	NA	False	NA	NA	NA	6980053	6988760	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_6980472_6984231_6984357_6987994
transcript_80533.known	chr7	-	556	3	FSM	ENSMUSG00000108043.3	ENSMUST00000203351.2	556	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCTTTAGTTCTGCATA	NA	False	NA	NA	False	AATAAA	-17	NA	6980419	6979300	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_6979470_6979559_6979747_6980219
transcript_80534.nnic	chr7	+	1198	8	NNC	ENSMUSG00000070837.7	novel	1401	7	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	158.962195480047	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGCTTGAGTGAGTT	2779	False	NA	20	True	ATTAAA	-21	NA	6998366	7006090	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_6998525_6998659_6998712_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
transcript_8054.nnic	chr10	+	1118	6	NNC	ENSMUSG00000020307.16	novel	1266	5	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	763.990157004657	3883	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGAGAGAATCACCTAGGA	NA	False	NA	21	True	AATAAA	-21	NA	79518010	79524232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_79518068_79518233_79518425_79520651_79520739_79520838_79520937_79521066_79521202_79523682
transcript_80548.known	chr7	+	1401	7	FSM	ENSMUSG00000070837.7	ENSMUST00000208049.2	1401	7	0	0	0	0	multi-exon	FALSE	canonical	2	56	junction_6	128.262751152988	480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGCTTGAGTGAGTT	2711	False	NA	20	True	ATTAAA	-21	NA	6998298	7006090	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_6998712_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
transcript_80551.known	chr7	+	1154	7	FSM	ENSMUSG00000070837.7	ENSMUST00000086248.8	1154	7	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_1	169.856802434678	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGCTTGAGTGAGTT	2794	False	NA	20	True	ATTAAA	-21	NA	6998381	7006090	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_6998548_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
transcript_80554.known	chr7	+	1320	7	FSM	ENSMUSG00000070837.7	ENSMUST00000207711.2	1320	7	0	0	0	0	multi-exon	FALSE	canonical	2	56	junction_6	160.229696234985	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGCTTGAGTGAGTT	2914	False	NA	20	True	ATTAAA	-21	NA	6998501	7006090	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_6998834_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
transcript_80556.nnic	chr7	+	1276	7	NNC	ENSMUSG00000070837.7	novel	1401	7	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	canonical	2	27	junction_1	167.377484215238	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGCTTGAGTGAGTT	2890	False	NA	20	True	ATTAAA	-21	NA	6998477	7006090	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_6998712_6999212_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
transcript_80562.known	chr7	-	2042	5	FSM	ENSMUSG00000062116.11	ENSMUST00000056246.8	2042	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	2.54950975679639	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTAATGACTCTTGAGGT	6236	False	NA	-5	True	AATAAA	-21	NA	7124487	7117688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_7119200_7119611_7119711_7120784_7120912_7122370_7122410_7124221
transcript_80564.known	chr7	-	3028	4	FSM	ENSMUSG00000063535.8	ENSMUST00000032622.9	3028	4	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_1	4.32049379893857	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGGTGGTTGCGTCTTTC	NA	False	NA	NA	False	NA	NA	NA	7139754	7133673	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_7136168_7137165_7137250_7138290_7138418_7139431
transcript_80566.known	chr7	+	2725	4	FSM	ENSMUSG00000034538.9	ENSMUST00000051435.8	2725	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	9.89949493661167	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAATCAAGAGTTTCTA	2969	False	NA	NA	False	AATAAA	-29	NA	7174328	7186561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_7174558_7175135_7175175_7177553_7177681_7184231
transcript_80569.known	chr7	-	2777	5	FSM	ENSMUSG00000066838.8	ENSMUST00000074455.9	2777	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	7.29725975966321	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTCATGACTATTGTGTC	NA	False	NA	NA	False	AATAAA	-18	NA	7212997	7205115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_7207359_7208511_7208599_7209244_7209372_7210523_7210563_7212716
transcript_80575.known	chr7	-	412	5	FSM	ENSMUSG00000110105.2	ENSMUST00000209788.2	412	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.78535710713571	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGGAAGGAGGGAATGGC	NA	False	NA	NA	False	NA	NA	NA	7281209	7237453	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_7237502_7270217_7270305_7271038_7271163_7272293_7272333_7281095
transcript_80576.known	chr7	-	2445	13	FSM	ENSMUSG00000000605.10	ENSMUST00000210061.2	2445	13	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_5	11.9335544672249	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAAAAAGAAAGCCTTA	NA	False	NA	NA	False	AATGAA	-44	NA	7301805	7287053	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_7287274_7290644_7290862_7291873_7292273_7293397_7293585_7294409_7294726_7294818_7294956_7296036_7296118_7296913_7297121_7297731_7297855_7297994_7298183_7298968_7299069_7299722_7299878_7301690
transcript_8058.known	chr10	+	979	5	FSM	ENSMUSG00000020307.16	ENSMUST00000218964.2	979	5	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_4	778.055749930556	2593	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGCTGAGAGAATCACCT	NA	False	NA	17	True	AATAAA	-17	NA	79518307	79524228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79518425_79520651_79520739_79520838_79520937_79521066_79521202_79523686
transcript_80580.known	chr7	-	4607	13	FSM	ENSMUSG00000000605.10	ENSMUST00000000619.8	4607	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_12	13.5592834127275	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGTCTTTGGTGTCTTTT	NA	False	NA	-1	True	ATTAAA	-21	NA	7302532	7285307	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_7287274_7290644_7290862_7291873_7292273_7293397_7293585_7294409_7294956_7296036_7296118_7296913_7297121_7297731_7297855_7297994_7298183_7298968_7299069_7299722_7299878_7301690_7301836_7302239
transcript_80583.known	chr7	-	658	3	FSM	ENSMUSG00000000605.10	ENSMUST00000210989.2	658	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCACGGACCGCTGTGAAA	NA	False	NA	NA	False	AATAAA	-20	NA	7302556	7300999	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_7301196_7301690_7301836_7302239
transcript_80586.nnic	chr7	-	784	5	NNC	ENSMUSG00000109654.2	novel	643	5	NA	NA	-22	3118	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2.29128784747792	12	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTTTTATTAGGTATTTA	NA	False	NA	NA	False	AATAAA	-22	NA	7377645	7362778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_7363020_7372685_7372773_7373537_7373664_7374809_7374849_7377354
transcript_80587.nnic	chr7	-	1097	5	Genic_Genomic	ENSMUSG00000109885.2	novel	390	1	NA	NA	-6670	-89	multi-exon	FALSE	canonical	1	1	junction_1	1.73205080756888	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGCCTTTTATATCATTA	NA	False	NA	NA	False	NA	NA	NA	7544633	7537662	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr7_-_7538198_7539361_7539449_7540595_7540722_7541866_7541905_7544322
transcript_8059.known	chr10	+	1078	6	FSM	ENSMUSG00000020307.16	ENSMUST00000166603.2	1078	6	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	763.990157004657	3346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGCTGAGAGAATCACCT	NA	False	NA	17	True	AATAAA	-17	NA	79518137	79524228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79518159_79518233_79518425_79520651_79520739_79520838_79520937_79521066_79521202_79523682
transcript_80591.known	chr7	-	915	5	FSM	ENSMUSG00000092574.5	ENSMUST00000172930.4	915	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	6.74536878161602	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTATACTATAGTAGTTTG	NA	False	NA	NA	False	NA	NA	NA	8095837	8089385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_8089971_8091140_8091228_8091987_8092114_8093259_8093299_8095759
transcript_80597.known	chr7	-	825	5	FSM	ENSMUSG00000092490.8	ENSMUST00000174729.2	825	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	6.67083203206317	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGTTACATGGGCTAAATG	NA	False	NA	NA	False	NA	NA	NA	8865651	8859275	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_8859771_8860940_8861028_8861801_8861928_8863073_8863113_8865573
transcript_80599.known	chr7	-	2545	5	FSM	ENSMUSG00000092178.3	ENSMUST00000210683.2	2545	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	6.67083203206317	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTGGTTTGTCTCACTTG	NA	False	NA	NA	False	NA	NA	NA	9610893	9602806	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_9604820_9605989_9606077_9606845_9606972_9608117_9608157_9610613
transcript_80600.known	chr7	-	4199	4	FSM	ENSMUSG00000030393.9	ENSMUST00000032551.8	4199	4	0	0	0	0	multi-exon	TRUE	canonical	3	55	junction_1	5.43650214343336	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAATATGTATTAAGACTT	NA	False	NA	-6	True	NA	NA	NA	10229321	10221155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_10224936_10226205_10226333_10228416_10228456_10229068
transcript_80601.known	chr7	+	2276	4	FSM	ENSMUSG00000054272.7	ENSMUST00000131379.4	2276	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	11.2644968324772	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAGAGTAGTTTGGAGGA	NA	False	NA	NA	False	NA	NA	NA	10739671	10744474	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_10739779_10740385_10740858_10742693_10742854_10742937
transcript_80605.known	chr7	-	1745	4	FSM	ENSMUSG00000095936.4	ENSMUST00000210521.2	1745	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	9.89949493661167	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATCTTCTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	11044609	11040304	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_11041336_11041419_11041580_11043399_11043872_11044527
transcript_80609.known	chr7	+	4748	7	FSM	ENSMUSG00000030386.20	ENSMUST00000098822.10	4748	7	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_4	11.513277359447	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGATGACCTTTTTATTG	NA	False	NA	NA	False	AATAAA	-17	NA	12212219	12230162	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_12212634_12213590_12213674_12214361_12214419_12214861_12214954_12223496_12223624_12223875_12223972_12226283
transcript_8061.known	chr10	+	1526	8	FSM	ENSMUSG00000023175.16	ENSMUST00000067036.12	1526	8	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	2963.990697884	1182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCATGCTCTGACTTACT	NA	False	NA	-53	True	NA	NA	NA	79540333	79547729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79540419_79544530_79544879_79545504_79545662_79545891_79545975_79546093_79546237_79546471_79546755_79547089_79547115_79547327
transcript_80612.nnic	chr7	+	935	6	NNC	ENSMUSG00000030386.20	novel	4069	8	NA	NA	3	363	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	56.8858506133116	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCCATCTCAGCTGTATC	NA	False	NA	NA	False	AATAAA	-27	NA	12212222	12218191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_12212634_12213590_12213674_12214361_12214419_12214861_12214954_12215044_12215109_12217963
transcript_80615.nnic	chr7	+	871	5	NNC	ENSMUSG00000030386.20	novel	4748	7	NA	NA	3	363	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_4	49.6959505392542	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCCATCTCAGCTGTATC	NA	False	NA	NA	False	AATAAA	-27	NA	12212222	12218191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_12212634_12213590_12213674_12214361_12214419_12214861_12214954_12217963
transcript_80616.known	chr7	+	3509	4	FSM	ENSMUSG00000030386.20	ENSMUST00000123589.8	3509	4	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_3	4.98887651569859	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTTTGTAATGTCTGAAG	NA	False	NA	NA	False	NA	NA	NA	12212231	12217828	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_12212634_12213590_12213674_12214361_12214419_12214861
transcript_80618.known	chr7	-	3709	7	FSM	ENSMUSG00000070822.6	ENSMUST00000211392.2	3709	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	11.5854314646552	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTATGCCTCATTGTTTTG	NA	False	NA	-1	True	AATAAA	-20	NA	12514581	12502018	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_12503673_12504730_12504821_12505590_12505670_12505935_12506043_12507367_12507518_12508039_12509586_12514498
transcript_80619.known	chr7	-	2577	4	FSM	ENSMUSG00000057894.11	ENSMUST00000108546.2	2577	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	5.8878405775519	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTTTAAAAATTGTATTT	NA	False	NA	-7	True	NA	NA	NA	12552781	12538903	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_12540520_12541838_12541901_12544732_12545594_12552743
transcript_80621.nnic	chr7	-	700	4	NNC	ENSMUSG00000057894.11	novel	2577	4	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	5.24933858267454	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACCAAGTAAATAAGTT	NA	False	NA	NA	False	AATGAA	-34	NA	12552796	12539999	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_12540520_12541838_12541901_12545528_12545594_12552743
transcript_80625.known	chr7	-	6727	2	FSM	ENSMUSG00000057894.11	ENSMUST00000072222.8	6727	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGATTTTTTAAAAATTG	NA	False	NA	-12	True	NA	NA	NA	12552785	12538908	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_12545594_12552743
transcript_80627.known	chr7	+	3591	8	FSM	ENSMUSG00000058638.15	ENSMUST00000004614.15	3591	8	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_1	17.0617127163813	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGCTGGACTATAGCGTGT	NA	False	NA	27	True	NA	NA	NA	12568687	12584504	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_12569092_12569373_12569455_12570219_12570347_12571015_12571112_12578358_12578833_12580722_12580824_12581898_12582026_12582323
transcript_80629.known	chr7	+	603	3	FSM	ENSMUSG00000058638.15	ENSMUST00000148041.2	603	3	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_1	26.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAATACTTCAGAGTCCCT	NA	False	NA	NA	False	AAAAAG	-36	NA	12568963	12570613	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_12569092_12569373_12569455_12570219
transcript_80630.known	chr7	+	3834	4	FSM	ENSMUSG00000060397.7	ENSMUST00000144578.2	3834	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	3.55902608401044	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTACACGGTGTGTTTGGTT	NA	False	NA	NA	False	CATAAA	-41	NA	12615103	12627349	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_12615288_12618569_12618697_12618949_12619046_12623922
transcript_80632.known	chr7	+	2620	3	FSM	ENSMUSG00000054715.12	ENSMUST00000055528.11	2620	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	9	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACTCCTTGTCTGTTGTCT	NA	False	NA	NA	False	NA	NA	NA	12631741	12642166	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_12631871_12637527_12638013_12640160
transcript_80633.known	chr7	+	2087	2	FSM	ENSMUSG00000054715.12	ENSMUST00000119989.3	2087	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTGTCTGTTGTCTTATG	NA	False	NA	NA	False	NA	NA	NA	12631793	12642170	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_12631871_12640160
transcript_80636.known	chr7	+	2995	2	FSM	ENSMUSG00000054715.12	ENSMUST00000117189.2	2995	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGGGCTTCTCCAACATC	NA	False	NA	30	True	AATAAA	-41	NA	12631762	12643010	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_12631908_12640160
transcript_80639.nnic	chr7	+	389	2	NNC	ENSMUSG00000054715.12	novel	2087	2	NA	NA	0	-9216	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGAGTTTGTAACGAGTTC	NA	False	NA	NA	False	NA	NA	NA	12631767	12632248	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_12631871_12631962
transcript_80652.known	chr7	+	652	6	FSM	ENSMUSG00000012848.16	ENSMUST00000137329.4	652	6	0	0	0	0	multi-exon	FALSE	canonical	3	632	junction_1	6589.62965271949	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATCAAGAAGAAAGATGAACT	NA	False	NA	-56	True	NA	NA	NA	12656363	12660519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_12656448_12656899_12657009_12659318_12659529_12659663_12659793_12660322_12660422_12660498
transcript_80673.known	chr7	+	761	6	FSM	ENSMUSG00000012848.16	ENSMUST00000004554.14	761	6	0	0	0	0	multi-exon	FALSE	canonical	3	14799	junction_5	1601.25238485381	175379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCTGTGTGCTTGTCTA	NA	False	NA	38	True	AATAAA	-24	NA	12656216	12660613	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_12656316_12656899_12657009_12659318_12659529_12659663_12659793_12660322_12660422_12660498
transcript_80674.known	chr7	+	794	6	FSM	ENSMUSG00000012848.16	ENSMUST00000108539.8	794	6	0	0	0	0	multi-exon	FALSE	canonical	3	946	junction_1	6466.78878578851	11936	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTCCTGTGTGCTTGTCT	NA	False	NA	37	True	AATAAA	-23	NA	12656216	12660612	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_12656350_12656899_12657009_12659318_12659529_12659663_12659793_12660322_12660422_12660498
transcript_80675.known	chr7	+	1248	5	FSM	ENSMUSG00000012848.16	ENSMUST00000139349.3	1248	5	0	0	0	0	multi-exon	FALSE	canonical	3	14799	junction_4	1606.02496478106	1558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCTTCCTGTGTGCTTGTC	NA	False	NA	36	True	AATAAA	-22	NA	12656257	12660611	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_12656316_12656899_12657009_12659318_12659529_12659663_12660422_12660498
transcript_80676.known	chr7	+	778	5	FSM	ENSMUSG00000012848.16	ENSMUST00000147435.8	778	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	7593.8368883918	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGTCAGGGCATACCACT	NA	False	NA	NA	False	NA	NA	NA	12656244	12660421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_12656476_12656899_12657009_12659318_12659529_12659663_12659793_12660322
transcript_80679.known	chr7	+	4615	6	FSM	ENSMUSG00000033961.17	ENSMUST00000045810.15	4615	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	10.7962956610126	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATATCTTTTGGTGGTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	12711774	12719641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_12712040_12712924_12713306_12713377_12713574_12713811_12713907_12715772_12715855_12716045
transcript_80681.known	chr7	-	2288	10	FSM	ENSMUSG00000030382.16	ENSMUST00000032539.14	2288	10	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_2	0.816496580927726	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTGTGTGGATTTGAAC	NA	False	NA	NA	False	AATAAA	-20	NA	12732077	12722272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_12722580_12722659_12722791_12722936_12723035_12723280_12723480_12724893_12724985_12725071_12725267_12727241_12727367_12728806_12728966_12730157_12730368_12731304
transcript_80683.known	chr7	+	3245	17	FSM	ENSMUSG00000005566.15	ENSMUST00000005705.8	3245	17	0	0	0	0	multi-exon	FALSE	canonical	3	3307	junction_7	380.550172242439	542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATGCCTCAGCTGTCTG	NA	False	NA	58	True	AATAAA	-19	NA	12758078	12764962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_12758989_12759230_12759344_12759570_12759704_12761543_12761680_12761759_12761877_12761947_12762063_12762334_12762482_12762590_12762706_12762807_12762915_12763014_12763052_12763133_12763180_12763269_12763523_12763602_12763923_12764009_12764134_12764215_12764303_12764381_12764520_12764615
transcript_80686.known	chr7	-	350	2	FSM	ENSMUSG00000049600.9	ENSMUST00000210108.2	350	2	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGGCGGTCACTTCTGTGA	NA	False	NA	NA	False	NA	NA	NA	12743961	12742175	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_12742257_12743692
transcript_80687.known	chr7	+	565	2	FSM	ENSMUSG00000005566.15	ENSMUST00000123778.2	565	2	0	0	0	0	multi-exon	FALSE	canonical	3	4601	junction_1	0	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTCATGCCTCAGCTGT	NA	False	NA	55	True	AATAAA	-16	NA	12764298	12764959	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_12764520_12764615
transcript_80689.known	chr7	-	930	6	FSM	ENSMUSG00000033916.6	ENSMUST00000210587.2	930	6	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_5	1091.38616447159	1485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGGCTGTGAGCTTATGA	7091	False	NA	-7	True	AATAAA	-21	NA	12768578	12765936	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12766568_12766749_12767755_12767970_12768428
transcript_80698.known	chr7	-	949	6	FSM	ENSMUSG00000033916.6	ENSMUST00000005711.6	949	6	0	0	0	0	multi-exon	FALSE	canonical	3	2610	junction_5	213.695671458268	13993	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCAAGGCTGTGAGCTT	6935	False	NA	-11	True	AATAAA	-17	NA	12768734	12765940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12766568_12766749_12767755_12767970_12768561
transcript_80699.known	chr7	-	726	6	FSM	ENSMUSG00000033916.6	ENSMUST00000211626.2	726	6	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_3	1108.87882115225	1772	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAATTTACCAAGGCTGTG	7003	False	NA	-16	True	AATAAA	-12	NA	12768666	12765945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12766718_12766749_12767755_12767970_12768561
transcript_80700.known	chr7	-	606	5	FSM	ENSMUSG00000033916.6	ENSMUST00000211344.2	606	5	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_3	1201.14705594278	572	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCAAGGCTGTGAGCTT	7098	False	NA	-11	True	AATAAA	-17	NA	12768571	12765940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12767755_12767970_12768561
transcript_80701.known	chr7	-	521	4	FSM	ENSMUSG00000033916.6	ENSMUST00000211369.2	521	4	0	0	0	0	multi-exon	FALSE	canonical	2	24	junction_2	1316.37304742995	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTCCCCCTGTAATAAAG	7017	False	NA	-46	True	AAAACA	-22	NA	12768652	12765975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_12766130_12766215_12766278_12767755_12767970_12768561
transcript_80702.known	chr7	-	888	5	FSM	ENSMUSG00000033916.6	ENSMUST00000209487.2	888	5	0	0	0	0	multi-exon	FALSE	canonical	3	2610	junction_4	222.956273739942	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCAAGGCTGTGAGCTT	7072	False	NA	-11	True	AATAAA	-17	NA	12768597	12765940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_12766130_12766215_12766278_12766361_12766749_12767755_12767970_12768561
transcript_80703.known	chr7	-	1228	7	FSM	ENSMUSG00000005575.17	ENSMUST00000165394.9	1228	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	840.033679880357	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATGGAAGAATCGGCTAAT	8441	False	NA	NA	False	NA	NA	NA	12772202	12769046	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_12769682_12769768_12769833_12770138_12770243_12770360_12770400_12770492_12770588_12771547_12771633_12771996
transcript_80704.nnic	chr7	-	1076	7	NNC	ENSMUSG00000005575.17	novel	1228	7	NA	NA	-72	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	839.669313215361	98	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCCTCTGCCTCTTCCTTC	8369	False	NA	-3	True	ATTAAA	-17	NA	12772274	12769164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_12769682_12769768_12769833_12770138_12770243_12770360_12770400_12770492_12770588_12771547_12771633_12772102
transcript_80707.known	chr7	-	801	6	FSM	ENSMUSG00000005575.17	ENSMUST00000125964.8	801	6	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_5	904.553503116317	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGCAATGGGCCTGGGTC	9089	False	NA	-94	True	NA	NA	NA	12771554	12769255	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_12769682_12769768_12769833_12770138_12770243_12770360_12770400_12770492_12770588_12771481
transcript_80708.known	chr7	-	1472	6	FSM	ENSMUSG00000005575.17	ENSMUST00000005714.14	1472	6	0	0	0	0	multi-exon	FALSE	canonical	3	1870	junction_5	193.215320303541	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCCTCTGCCTCTTCCTTC	8443	False	NA	-3	True	ATTAAA	-17	NA	12772200	12769164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_12769682_12769768_12769833_12770138_12770243_12770360_12770400_12770492_12770588_12771547
transcript_80709.known	chr7	+	1272	1	FSM	ENSMUSG00000048261.7	ENSMUST00000122190.2	1272	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGAATGGCTGAGAAGAG	NA	False	NA	NA	False	GGGGCT	-4	NA	12912829	12914101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_12912800_12914100
transcript_80713.known	chr7	+	3174	28	FSM	ENSMUSG00000056394.21	ENSMUST00000177588.10	3174	28	0	0	0	0	multi-exon	TRUE	canonical	3	470	junction_1	193.081793225492	731	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGGTGAGGAGGTCTACA	1107	False	NA	30	True	AATAAA	-18	NA	13011238	13045350	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_13011456_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
transcript_80715.known	chr7	+	3091	28	FSM	ENSMUSG00000056394.21	ENSMUST00000098814.13	3091	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	267.791767474326	1042	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGGTGAGGAGGTCTACA	2620	False	NA	30	True	AATAAA	-18	NA	13012751	13045350	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
transcript_80717.known	chr7	+	3166	28	FSM	ENSMUSG00000056394.21	ENSMUST00000165964.10	3166	28	0	0	0	0	multi-exon	FALSE	canonical	3	577	junction_1	177.886980349259	738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGGTGAGGAGGTCTACA	3059	False	NA	30	True	AATAAA	-18	NA	13013190	13045350	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_13013400_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
transcript_80725.nic	chr7	+	953	6	ISM	ENSMUSG00000056394.21	ENSMUST00000146998.9	944	9	-320	2773	-311	-2773	5prime_fragment	FALSE	canonical	0	0	junction_1	535.999104476864	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAGAAAGAAGAAGGTGAG	2309	False	NA	NA	False	AAGAAA	-2	NA	13012440	13022670	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589
transcript_80729.known	chr7	-	4282	3	FSM	ENSMUSG00000070814.18	ENSMUST00000135898.2	4282	3	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTCTTAGCAAGTATTT	1644	False	NA	NA	False	NA	NA	NA	13012647	12999652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_13003574_13011071_13011355_13012569
transcript_8073.known	chr10	+	1261	7	FSM	ENSMUSG00000023175.16	ENSMUST00000179781.8	1261	7	0	0	0	0	multi-exon	FALSE	canonical	3	6175	junction_5	429.072416835304	37534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGTCACTACTTGAA	NA	False	NA	21	True	AATAAA	-15	NA	79540324	79547803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79540419_79545504_79545662_79545891_79545975_79546093_79546237_79546471_79546755_79547089_79547115_79547327
transcript_80730.known	chr7	-	4151	2	FSM	ENSMUSG00000070814.18	ENSMUST00000137574.2	4151	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTCAGTATAGATGGCTT	1943	False	NA	NA	False	NA	NA	NA	13012348	13007282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_13011355_13012269
transcript_80731.known	chr7	+	944	9	FSM	ENSMUSG00000056394.21	ENSMUST00000146998.9	944	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	552.157232475497	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAGACCAAGGGGTGAGT	2629	False	NA	NA	False	NA	NA	NA	13012760	13025443	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023313_13023422_13025112_13025239_13025381
transcript_80732.known	chr7	-	612	1	FSM	ENSMUSG00000074547.5	ENSMUST00000092523.3	612	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	591	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCATGCGTAGTGTAATA	NA	False	NA	NA	False	NA	NA	NA	13067182	13066570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_13066600_13067200
transcript_80735.nnic	chr7	-	505	4	NNC	ENSMUSG00000084102.3	novel	428	3	NA	NA	4042	20645	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGTGGAGGCCCATTCCCG	NA	False	NA	NA	False	NA	NA	NA	13870887	13848701	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_13848899_13866192_13866236_13869337_13869405_13870689
transcript_80736.nnic	chr7	-	632	3	NNC	ENSMUSG00000084102.3	novel	428	3	NA	NA	4042	20766	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGTGGCTGGACAATAGA	NA	False	NA	NA	False	NA	NA	NA	13870887	13848580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_13848948_13869337_13869405_13870689
transcript_80737.nnic	chr7	-	576	3	NNC	ENSMUSG00000084102.3	novel	428	3	NA	NA	4042	20759	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACAGTGGCAGTGGCTGGA	NA	False	NA	NA	False	NA	NA	NA	13870887	13848587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_13848899_13869337_13869405_13870689
transcript_8074.known	chr10	-	3755	21	FSM	ENSMUSG00000020329.13	ENSMUST00000020580.13	3755	21	0	0	0	0	multi-exon	TRUE	canonical	3	126	junction_16	17.3118456555042	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGAGACGCTGCGCTCGG	4709	False	NA	-7	True	NA	NA	NA	79582413	79571963	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_79572118_79572200_79572278_79572356_79572449_79572567_79572641_79573097_79573197_79573290_79573344_79573433_79573548_79573633_79573721_79573864_79574045_79574161_79574285_79574515_79574639_79574976_79575766_79575977_79576200_79576412_79576584_79576666_79576832_79576960_79577111_79577541_79577729_79577821_79577953_79579011_79579563_79581507_79581607_79582298
transcript_80743.known	chr7	-	1344	3	FSM	ENSMUSG00000041583.9	ENSMUST00000108513.5	1344	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	9.5	332	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGCCAGTTTTTACCCCC	NA	False	NA	20	True	AATAAA	-36	NA	15573603	15567165	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_15567876_15568304_15568891_15573555
transcript_80749.known	chr7	+	934	5	FSM	ENSMUSG00000074365.14	ENSMUST00000098801.9	934	5	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_3	373.339992500134	1345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGACTGCTTTAAAAGAAAAT	NA	False	NA	-11	True	AATAAA	-24	NA	15630048	15637945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_15630183_15631328_15631478_15632369_15632542_15636774_15636933_15637624
transcript_80755.known	chr7	+	2090	3	FSM	ENSMUSG00000074365.14	ENSMUST00000150050.3	2090	3	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_2	3	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGATCTGTGCCTGCTTGT	NA	False	NA	NA	False	AATAAA	-19	NA	15630095	15634223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_15630183_15631328_15631478_15632369
transcript_80759.known	chr7	+	571	3	FSM	ENSMUSG00000074365.14	ENSMUST00000171280.3	571	3	0	0	0	0	multi-exon	FALSE	canonical	3	864	junction_1	106.5	5526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGACTGCTTTAAAAGAAAAT	NA	False	NA	-11	True	AATAAA	-24	NA	15635570	15637945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_15635663_15636774_15636933_15637624
transcript_8076.nnic	chr10	-	781	3	NNC	ENSMUSG00000020329.13	novel	4288	17	NA	NA	0	-1279	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	63.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAACCAAACA	4707	False	NA	NA	False	NA	NA	NA	79582415	79580779	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_79580866_79581028_79581607_79582298
transcript_8077.nic	chr10	-	661	2	ISM	ENSMUSG00000020329.13	ENSMUST00000161375.2	411	4	-8	1562	0	-1562	5prime_fragment	FALSE	canonical	3	127	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTTCGAGACAGGGTTTC	4707	False	NA	NA	False	NA	NA	NA	79582415	79581062	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_79581607_79582298
transcript_80770.known	chr7	-	736	6	FSM	ENSMUSG00000041571.11	ENSMUST00000044355.11	736	6	0	0	0	0	multi-exon	FALSE	canonical	3	1985	junction_1	35.4028247460566	8377	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGATGTTTATTTTGGCT	NA	False	NA	-11	True	AATAAA	-21	NA	15656327	15651132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_15651465_15653772_15653872_15653967_15654043_15654229_15654284_15654373_15654399_15656176
transcript_80773.known	chr7	-	1455	13	FSM	ENSMUSG00000041560.13	ENSMUST00000198688.5	1455	13	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_12	551.142065522936	638	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACGCTGGGGTCTTGTTAT	NA	False	NA	-9	True	AATAAA	-12	NA	15679726	15671762	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_15671815_15672098_15672156_15672276_15672354_15672835_15672903_15673013_15673190_15673378_15673580_15673653_15673759_15674062_15674159_15675664_15675736_15676099_15676300_15676713_15676823_15679214_15679280_15679547
transcript_8078.known	chr10	-	1639	9	FSM	ENSMUSG00000035890.10	ENSMUST00000047203.9	1639	9	0	0	0	0	multi-exon	FALSE	canonical	3	909	junction_4	92.4302946819927	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGGGTGTCCATGACTG	NA	False	NA	20	True	AATACA	-43	NA	79602786	79594348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_79595071_79596624_79596741_79596822_79596917_79597263_79597334_79597398_79597468_79597918_79598164_79598315_79598380_79598480_79598540_79602586
transcript_80784.known	chr7	-	3176	13	FSM	ENSMUSG00000041560.13	ENSMUST00000044158.13	3176	13	0	0	0	0	multi-exon	FALSE	canonical	3	1334	junction_1	195.89089579548	5831	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAAAAAATTTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	15679999	15670107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_15671815_15672098_15672156_15672276_15672354_15672835_15672903_15673013_15673190_15673378_15673580_15673653_15673759_15674062_15674159_15675664_15675736_15676099_15676300_15676713_15676823_15679214_15679280_15679754
transcript_80785.known	chr7	-	1793	12	FSM	ENSMUSG00000041560.13	ENSMUST00000197477.5	1793	12	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_11	561.705652160828	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACGCTGGGGTCTTGTTAT	NA	False	NA	-9	True	AATAAA	-12	NA	15679675	15671762	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_15672156_15672276_15672354_15672835_15672903_15673013_15673190_15673378_15673580_15673653_15673759_15674062_15674159_15675664_15675736_15676099_15676300_15676713_15676823_15679214_15679280_15679442
transcript_80788.known	chr7	+	2517	11	FSM	ENSMUSG00000006024.14	ENSMUST00000006181.7	2517	11	0	0	0	0	multi-exon	TRUE	canonical	3	1130	junction_8	65.9754499795189	1296	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTGCACATCTCATTCAT	NA	False	NA	2	True	AATAAA	-17	NA	15832382	15851900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_15832700_15841477_15841558_15842975_15843093_15846508_15846556_15847036_15847115_15847274_15847331_15847400_15847486_15848045_15848151_15849127_15849197_15849524_15849576_15850388
transcript_8079.nic	chr10	-	1502	9	NIC	ENSMUSG00000035890.10	novel	1639	9	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	338.39360864975	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCCCATGGCTTGGCGTC	NA	False	NA	-7	True	AATACA	-16	NA	79602799	79594375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_-_79595071_79596624_79596741_79596822_79596917_79597263_79597334_79597398_79597468_79597918_79598164_79598315_79598380_79598480_79598540_79602709
transcript_80790.known	chr7	+	1630	12	FSM	ENSMUSG00000006021.6	ENSMUST00000006178.5	1630	12	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_5	5.62609034427847	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTTTGTCTGGCAAGCA	NA	False	NA	32	True	NA	NA	NA	15853819	15861441	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_15854107_15854414_15854498_15854636_15854722_15854794_15854850_15856959_15857036_15857124_15857199_15857696_15857807_15857879_15857958_15858641_15858718_15859637_15859774_15859861_15860033_15861042
transcript_80797.nic	chr7	+	1425	4	ISM	ENSMUSG00000006021.6	ENSMUST00000006178.5	1630	12	-29	5706	-29	286	5prime_fragment	FALSE	canonical	3	83	junction_1	1.88561808316413	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAAGTGGGTTCATTTGC	NA	False	NA	NA	False	AAAAAG	-1	NA	15853790	15855735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_15854107_15854414_15854498_15854636_15854722_15854794
transcript_80798.known	chr7	+	597	3	FSM	ENSMUSG00000006021.6	ENSMUST00000152044.2	597	3	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_1	2	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCTTTTGCCCTATCTGG	NA	False	NA	NA	False	NA	NA	NA	15853853	15854897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_15854107_15854414_15854498_15854636
transcript_80800.known	chr7	+	1322	2	FSM	ENSMUSG00000006021.6	ENSMUST00000130170.2	1322	2	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGTTGG	NA	False	NA	NA	False	NA	NA	NA	15853819	15855449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_15854107_15854414
transcript_80801.known	chr7	+	5261	10	FSM	ENSMUSG00000030376.9	ENSMUST00000211649.2	5261	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.314269680527354	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATGCATGGAACAGGAGGT	NA	False	NA	NA	False	AATAAA	-20	NA	15863750	15894988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_15864347_15867753_15868445_15874428_15875094_15878855_15879279_15884265_15884370_15884498_15884517_15886743_15886869_15887119_15887220_15891071_15891351_15892728
transcript_80803.known	chr7	+	1731	13	FSM	ENSMUSG00000041420.19	ENSMUST00000002495.18	1731	13	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	4.17997873466148	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAATTCTCATTTGTCTT	7694	False	NA	NA	False	AATAAA	-17	NA	15909354	15920429	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_15909493_15911316_15911499_15911633_15911794_15911885_15911937_15912669_15912721_15912875_15913026_15915965_15916078_15916244_15916394_15917715_15917793_15917962_15918022_15918559_15918644_15919372_15919443_15919981
transcript_80804.known	chr7	+	1839	13	FSM	ENSMUSG00000041420.19	ENSMUST00000176506.8	1839	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	5.65439848456246	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAATTCTCATTTGTCTT	7539	False	NA	NA	False	AATAAA	-17	NA	15909199	15920429	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_15909493_15911316_15911499_15911633_15911794_15911885_15911937_15912669_15912721_15912926_15913026_15915965_15916078_15916244_15916394_15917715_15917793_15917962_15918022_15918559_15918644_15919372_15919447_15919981
transcript_80805.known	chr7	+	1925	12	FSM	ENSMUSG00000041420.19	ENSMUST00000175946.8	1925	12	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	3.73723723474445	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCAAAATTCTCATTTGT	7652	False	NA	NA	False	AATAAA	-14	NA	15909312	15920426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_15909493_15911316_15911499_15911633_15911794_15911885_15911937_15912669_15913026_15915965_15916078_15916244_15916394_15917715_15917793_15917962_15918022_15918559_15918644_15919372_15919443_15919981
transcript_80810.nic	chr7	-	1987	12	NIC	ENSMUSG00000041375.20	novel	2379	11	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_11	66.4748756366576	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCACTGTGTCCTTGAACC	NA	False	NA	-1	True	AATAAA	-27	NA	16019972	16009388	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_16010033_16010126_16010221_16010418_16010555_16010651_16010699_16012281_16012464_16014522_16014697_16014782_16014867_16016281_16016531_16016676_16016776_16018195_16018301_16018419_16018472_16019851
transcript_80814.known	chr7	-	2175	14	FSM	ENSMUSG00000041375.20	ENSMUST00000118976.10	2175	14	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	66.2157134678708	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCTTTGAACTGTGCTGC	NA	False	NA	-8	True	ATTAAA	-14	NA	16020715	16007969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_16008342_16009180_16009301_16009662_16010033_16010126_16010221_16010418_16010555_16010651_16010699_16012281_16012464_16014522_16014697_16014782_16014867_16016281_16016531_16016676_16016776_16018195_16018301_16018419_16018472_16020624
transcript_80815.known	chr7	-	867	2	FSM	ENSMUSG00000041375.20	ENSMUST00000172670.2	867	2	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGAACTGTGCTGCTAG	8548	False	NA	-5	True	ATTAAA	-17	NA	16009696	16007966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_16008342_16009204
transcript_80824.known	chr7	-	1875	9	FSM	ENSMUSG00000052833.10	ENSMUST00000094815.5	1875	9	0	0	0	0	multi-exon	FALSE	canonical	3	2941	junction_6	113.453115316416	7599	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTTGTCTCCTCTGTTT	NA	False	NA	-4	True	AATAAA	-17	NA	16121710	16060974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_16061855_16064537_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102433_16102577_16104211_16104386_16112289_16112402_16121565
transcript_80825.known	chr7	+	815	3	FSM	ENSMUSG00000019158.10	ENSMUST00000019302.10	815	3	0	0	0	0	multi-exon	FALSE	canonical	3	728	junction_1	16.5	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAAGACTCTGAGTGATA	NA	False	NA	16	True	ATTAAA	-17	NA	16186703	16189415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_16187096_16188045_16188139_16189085
transcript_80826.known	chr7	+	699	3	FSM	ENSMUSG00000019158.10	ENSMUST00000209536.2	699	3	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	359.5	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACTCTGAGTGATAGCTC	NA	False	NA	20	True	ATTAAA	-21	NA	16186887	16189419	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_16187096_16187981_16188139_16189085
transcript_80830.known	chr7	-	795	1	FSM	ENSMUSG00000108366.2	ENSMUST00000206264.2	795	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2903	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCAGATTTTTAATAGTG	NA	False	NA	NA	False	NA	NA	NA	16453835	16453040	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_16453000_16453800
transcript_80838.known	chr7	+	836	5	FSM	ENSMUSG00000008036.12	ENSMUST00000086112.8	836	5	0	0	0	0	multi-exon	FALSE	canonical	3	580	junction_2	14.0423466699836	7393	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTGTCTGAGCCCTCAT	NA	False	NA	19	True	AATAAA	-19	NA	16472334	16483219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_16472464_16477143_16477294_16481185_16481300_16482613_16482674_16482836
transcript_8084.known	chr10	+	2167	3	FSM	ENSMUSG00000020327.5	ENSMUST00000219228.2	2167	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAATTGTCTGC	NA	False	NA	NA	False	TTTAAA	-30	NA	79590909	79594430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79591140_79592413_79592518_79592597
transcript_80841.known	chr7	+	2764	9	FSM	ENSMUSG00000001918.18	ENSMUST00000108496.9	2764	9	0	0	0	0	multi-exon	FALSE	canonical	3	1461	junction_5	112.684293492927	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGTGTTGTCACATGTCT	NA	False	NA	73	True	NA	NA	NA	16515264	16532199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_16516401_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16529878_16529948_16530084_16531426
transcript_80844.nnic	chr7	+	1784	9	NNC	ENSMUSG00000001918.18	novel	853	3	NA	NA	134	0	at_least_one_novel_splicesite	FALSE	canonical	2	41	junction_1	534.082800228579	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGTGTTGTCACATGTCT	NA	False	NA	73	True	NA	NA	NA	16518796	16532199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_16518953_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16529878_16529948_16530084_16531426
transcript_80846.nnic	chr7	+	1713	9	NNC	ENSMUSG00000001918.18	novel	853	3	NA	NA	139	0	at_least_one_novel_splicesite	FALSE	canonical	1	19	junction_1	541.199593495782	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGTGTTGTCACATGTCT	NA	False	NA	73	True	NA	NA	NA	16518801	16532199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_16518887_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16529878_16529948_16530084_16531426
transcript_80847.nnic	chr7	+	1816	9	NNC	ENSMUSG00000001918.18	novel	853	3	NA	NA	145	0	at_least_one_novel_splicesite	FALSE	canonical	1	18	junction_1	541.52318452214	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGTGTTGTCACATGTCT	NA	False	NA	73	True	NA	NA	NA	16518807	16532199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_16518996_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16529878_16529948_16530084_16531426
transcript_80850.known	chr7	+	475	4	FSM	ENSMUSG00000001918.18	ENSMUST00000206444.2	475	4	0	0	0	0	multi-exon	FALSE	canonical	3	1525	junction_3	60.7124369466422	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	16516322	16521104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_16516401_16519600_16519644_16520273_16520319_16520795
transcript_80854.known	chr7	+	3535	18	FSM	ENSMUSG00000030374.16	ENSMUST00000019220.16	3535	18	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_8	104.795467294144	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTTTTCCAGGCCATCTG	NA	False	NA	16	True	AATAAA	-16	NA	16549813	16574856	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_16550560_16556420_16556525_16556930_16557005_16558063_16558143_16560388_16560587_16562599_16562742_16564250_16564411_16564949_16565064_16565389_16565506_16566850_16567027_16567102_16567151_16567799_16567922_16571486_16571658_16571773_16571915_16572194_16572294_16572487_16572575_16573665_16573898_16574130
transcript_80855.known	chr7	+	3082	18	FSM	ENSMUSG00000030374.16	ENSMUST00000108495.9	3082	18	0	0	0	0	multi-exon	FALSE	canonical	3	350	junction_8	55.9168933502007	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATAGGTTTTCCAGGCCA	NA	False	NA	12	True	AATAAA	-12	NA	16550241	16574852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_16550560_16556420_16556525_16556930_16557005_16558063_16558143_16560388_16560587_16562599_16562742_16564250_16564411_16564949_16565064_16565410_16565506_16566850_16567027_16567102_16567151_16567799_16567922_16571486_16571658_16571773_16571915_16572194_16572294_16572487_16572575_16573665_16573898_16574130
transcript_80856.known	chr7	-	2827	3	FSM	ENSMUSG00000048920.9	ENSMUST00000061390.9	2827	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	10.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTACAGCTTGTTCCACAC	NA	False	NA	NA	False	AATAGA	-22	NA	16550657	16543170	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_16545902_16548988_16549052_16550624
transcript_80857.known	chr7	-	2573	1	FSM	ENSMUSG00000048920.9	ENSMUST00000205677.2	2573	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAAAAAAAAAATAGC	NA	False	NA	NA	False	TTTAAA	-8	NA	16549618	16547045	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_16547000_16549600
transcript_80858.known	chr7	+	522	5	FSM	ENSMUSG00000063594.6	ENSMUST00000205459.2	522	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.82915619758885	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTGCCTGCACTTTAGG	NA	False	NA	NA	False	AATAAA	-12	NA	16626195	16629348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_16626282_16626374_16626437_16627045_16627145_16628866_16628953_16629159
transcript_80859.known	chr7	+	910	4	FSM	ENSMUSG00000063594.6	ENSMUST00000078182.6	910	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.816496580927726	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGCCTGCACTTTAGGGG	NA	False	NA	NA	False	AATAAA	-14	NA	16625710	16629350	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_16626282_16626374_16626437_16628866_16628953_16629159
transcript_8086.known	chr10	+	1070	3	FSM	ENSMUSG00000020327.5	ENSMUST00000219981.2	1070	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	79590909	79593356	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79591140_79592413_79592518_79592620
transcript_80860.known	chr7	+	432	3	FSM	ENSMUSG00000063594.6	ENSMUST00000205716.2	432	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTTAGGGGAAAAAACGAG	NA	False	NA	NA	False	AATAAA	-24	NA	16626136	16629360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_16626282_16628866_16628953_16629159
transcript_80863.known	chr7	+	4809	1	FSM	ENSMUSG00000041117.9	ENSMUST00000094805.5	4809	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTGTTTCCGAGGTGGC	4676	False	NA	20	True	AATAAA	-17	NA	16726632	16731441	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_16726600_16731400
transcript_80865.known	chr7	-	2072	13	FSM	ENSMUSG00000003099.12	ENSMUST00000003183.12	2072	13	0	0	0	0	multi-exon	FALSE	canonical	3	1050	junction_5	57.0079794609686	1512	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACCTCGACGTGTGTCCA	NA	False	NA	-3	True	AATAAA	-37	NA	16761841	16738564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16741757_16742538_16742638_16742917_16742984_16743799_16743922_16749322_16749471_16756339_16756582_16761617
transcript_80867.known	chr7	-	6402	15	FSM	ENSMUSG00000004328.16	ENSMUST00000108492.9	6402	15	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_10	3.50218590632322	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACCGGTGTTGACTCATC	NA	False	NA	-1	True	CATAAA	-25	NA	16796352	16765431	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_16769891_16771058_16771141_16773482_16773595_16774893_16775166_16776513_16776616_16778301_16778493_16778779_16778893_16782538_16782687_16782924_16783032_16784473_16784683_16785057_16785171_16785846_16785932_16788606_16788753_16790184_16790376_16796280
transcript_8087.known	chr10	+	1955	5	FSM	ENSMUSG00000020325.11	ENSMUST00000020575.5	1955	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	2.6809513236909	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTATTTTCTGCCTCCTT	NA	False	NA	NA	False	AATAAA	-17	NA	79613105	79618464	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79613232_79614396_79614583_79615798_79616015_79616957_79617186_79617265
transcript_80872.nnic	chr7	+	661	3	NNC	ENSMUSG00000030413.8	novel	520	4	NA	NA	-2469	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	118	120	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTCCCTCCGGTGAATC	NA	False	NA	6	True	AATAAA	-15	NA	18616135	18624366	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_18616397_18623202_18623325_18624088
transcript_80874.known	chr7	+	694	3	FSM	ENSMUSG00000030413.8	ENSMUST00000032573.8	694	3	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_2	21	1940	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTCCCTCCGGTGAATC	NA	False	NA	6	True	AATAAA	-15	NA	18618604	18624366	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_18618899_18623202_18623325_18624088
transcript_8088.known	chr10	+	1549	3	FSM	ENSMUSG00000020325.11	ENSMUST00000168798.2	1549	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAGACAATAGAAAC	NA	False	NA	NA	False	NA	NA	NA	79616414	79618441	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79616560_79616957_79617186_79617265
transcript_80880.nnic	chr7	-	1936	15	NNC	ENSMUSG00000074358.10	novel	2022	14	NA	NA	1	0	at_least_one_novel_splicesite	TRUE	canonical	3	10	junction_14	58.7855407044825	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCTAGTGTGTGATTCAA	2761	False	NA	-1	True	AATAAA	-18	NA	18644339	18624807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_18625099_18625239_18625313_18625963_18626025_18626198_18626278_18626362_18626509_18626922_18626999_18627109_18627274_18627691_18627775_18627859_18628071_18633482_18633639_18634843_18635002_18637394_18637478_18637706_18637865_18644057_18644183_18644267
transcript_809.known	chr1	+	2048	1	FSM	ENSMUSG00000061024.9	ENSMUST00000072079.9	2048	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	589	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTTGCATTATTTTTGTA	NA	False	NA	19	True	AATAAA	-19	NA	9615632	9617680	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_9615600_9617700
transcript_8090.known	chr10	+	2414	5	FSM	ENSMUSG00000035852.12	ENSMUST00000046833.5	2414	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	3.57071421427143	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGGAGCAGAGGATGTG	NA	False	NA	3	True	AATAAA	-17	NA	79658460	79666286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79658521_79661529_79663269_79663711_79663846_79665226_79665266_79665844
transcript_80900.known	chr7	-	2022	14	FSM	ENSMUSG00000074358.10	ENSMUST00000098780.10	2022	14	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_7	27.4902887640592	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCTAGTGTGTGATTCAA	2760	False	NA	-1	True	AATAAA	-18	NA	18644340	18624807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_18625099_18625239_18625313_18625963_18626025_18626198_18626278_18626362_18626509_18626922_18626999_18627109_18627274_18627691_18627775_18627859_18628071_18633482_18633639_18634843_18635002_18637394_18637478_18637706_18637865_18644057
transcript_80901.known	chr7	-	1961	14	FSM	ENSMUSG00000074358.10	ENSMUST00000135467.8	1961	14	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_10	61.8715026505473	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCCTAGTGTGTGATTCA	2777	False	NA	-2	True	AATAAA	-17	NA	18644323	18624808	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_18625099_18625239_18625313_18625963_18626025_18626198_18626278_18626362_18626509_18626922_18626999_18627109_18627274_18627703_18627775_18627859_18628071_18633482_18633608_18634843_18635002_18637394_18637478_18637706_18637865_18644057
transcript_80903.known	chr7	+	2734	1	FSM	ENSMUSG00000044030.5	ENSMUST00000053713.5	2734	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGATGGTACTGAGATTCTGA	NA	False	NA	21	True	ATTAAA	-27	NA	18737968	18740702	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_18738000_18740700
transcript_80904.known	chr7	-	2037	2	FSM	ENSMUSG00000040891.7	ENSMUST00000036018.6	2037	2	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTTAGTGTCTTTTTCTT	NA	False	NA	-3	True	ATTAAA	-16	NA	18757463	18747208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_18749056_18757273
transcript_80905.known	chr7	+	4116	27	FSM	ENSMUSG00000023118.16	ENSMUST00000023882.14	4116	27	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_24	19.2187654844311	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGAGGATGTGCCTGTGT	NA	False	NA	15	True	AATAAA	-29	NA	18758301	18788542	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_18758432_18762788_18762913_18763039_18763106_18764467_18764522_18764603_18764678_18768331_18768459_18769750_18770001_18770586_18770758_18771784_18772025_18774014_18774170_18774466_18774618_18776502_18776708_18777349_18777501_18778859_18779096_18779556_18779639_18779772_18779887_18780679_18780828_18781374_18781536_18782373_18782483_18782764_18782866_18783304_18783396_18783862_18783965_18786291_18786480_18787194_18787372_18787471_18787568_18787839_18788224_18788313
transcript_80909.nic	chr7	+	1176	6	ISM	ENSMUSG00000023118.16	ENSMUST00000146903.8	4781	23	-56	16626	-7	17	5prime_fragment	FALSE	canonical	3	129	junction_5	18.8403821617291	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCATGAATCTTTAGAGAT	NA	False	NA	NA	False	NA	NA	NA	18758294	18769052	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_18758432_18762788_18762913_18763039_18763106_18764467_18764522_18764603_18764678_18768331
transcript_80910.known	chr7	+	4760	5	FSM	ENSMUSG00000023118.16	ENSMUST00000137287.3	4760	5	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_1	17.1810215063017	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATTTAAAAAAAAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	18758347	18769035	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_18758432_18762788_18762913_18763039_18763106_18764467_18764522_18764603
transcript_80912.known	chr7	+	2494	5	FSM	ENSMUSG00000030410.17	ENSMUST00000032570.14	2494	5	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_3	47.1858029496161	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGTTTCTGTTCCCTGGG	NA	False	NA	14	True	ACTAAA	-14	NA	18810151	18816701	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_18810627_18811979_18812163_18813966_18815227_18815843_18815919_18816200
transcript_80913.known	chr7	+	2388	4	FSM	ENSMUSG00000030410.17	ENSMUST00000108479.2	2388	4	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_3	77.0757203447796	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGTTTCTGTTCCCTGGG	NA	False	NA	14	True	ACTAAA	-14	NA	18810182	18816701	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_18810627_18811979_18812163_18813966_18815227_18816200
transcript_80914.known	chr7	-	2710	7	FSM	ENSMUSG00000030407.3	ENSMUST00000032566.3	2710	7	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_4	5.82380173655205	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATTAAAAACCAAAAA	7204	False	NA	NA	False	NA	NA	NA	18883216	18873626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_18875225_18877110_18877228_18878584_18878685_18878808_18878962_18880794_18881077_18882300_18882445_18882900
transcript_80926.known	chr7	+	1420	3	FSM	ENSMUSG00000040824.4	ENSMUST00000049294.4	1420	3	0	0	0	0	multi-exon	FALSE	canonical	3	3249	junction_1	86	24826	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCTCTCTCTTTTGTTCT	NA	False	NA	NA	False	NA	NA	NA	18883646	18887467	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_18883820_18885142_18885323_18886400
transcript_80929.known	chr7	+	2255	19	FSM	ENSMUSG00000040811.16	ENSMUST00000120595.8	2255	19	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	24.7224719088515	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGAGTCTGGTCTATT	NA	False	NA	25	True	AATACA	-17	NA	18915094	18940407	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_18915149_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
transcript_8093.known	chr10	+	3110	14	FSM	ENSMUSG00000006498.17	ENSMUST00000172282.8	3110	14	0	0	0	0	multi-exon	FALSE	canonical	3	966	junction_8	238.590734232364	735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTCCTGCCTGTCATTGG	1383	False	NA	23	True	AATAAA	-13	NA	79690260	79700266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
transcript_80931.nic	chr7	+	2382	19	NIC	ENSMUSG00000040811.16	novel	2255	19	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	28.4707452191426	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGTCTGGAGTCTGGTCT	NA	False	NA	22	True	AATACA	-14	NA	18915096	18940404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_18915281_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
transcript_80932.nic	chr7	+	2291	19	NIC	ENSMUSG00000040811.16	novel	2255	19	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	33.4490583749803	335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGTCTGGAGTCTGGTCT	NA	False	NA	22	True	AATACA	-14	NA	18915117	18940404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_18915211_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
transcript_80939.known	chr7	+	2882	2	FSM	ENSMUSG00000044317.8	ENSMUST00000060225.6	2882	2	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATCCCTTTTAAATTTAGT	NA	False	NA	NA	False	AATAAA	-26	NA	18946462	18958099	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_18946560_18955314
transcript_80941.known	chr7	+	3366	2	FSM	ENSMUSG00000052214.10	ENSMUST00000063976.9	3366	2	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_1	0	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCTTCAATTTTAT	3233	False	NA	9	True	AATAAA	-14	NA	18962258	18981793	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_18962510_18978678
transcript_80944.known	chr7	+	1390	2	FSM	ENSMUSG00000052214.10	ENSMUST00000161711.2	1390	2	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAGTGTCTCAAACCATT	3282	False	NA	NA	False	ATTAAA	-14	NA	18962307	18990468	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_18962510_18989280
transcript_80961.known	chr7	-	2215	13	FSM	ENSMUSG00000030403.10	ENSMUST00000032561.9	2215	13	0	0	0	0	multi-exon	TRUE	canonical	3	1236	junction_9	117.461666323765	1710	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCTGGAGTACTTTAAA	NA	False	NA	NA	False	AATAAA	-24	NA	19005742	18990853	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994607_18994748_18994991_18995100_18995139_18995899_18995985_18998329_18998496_18998578_18998751_19005438
transcript_80965.nnic	chr7	-	895	5	NNC	ENSMUSG00000030402.6	novel	1648	5	NA	NA	434	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	10.779030568655	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTTTCTTCGTTGTTGT	NA	False	NA	1	True	AATAAA	-17	NA	19013092	19010729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_19011135_19011874_19011936_19012009_19012116_19012194_19012313_19012887
transcript_80966.known	chr7	-	1648	5	FSM	ENSMUSG00000030402.6	ENSMUST00000032560.6	1648	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	5.35607132140714	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTTTCTTCGTTGTTGT	9555	False	NA	1	True	AATAAA	-17	NA	19013989	19010729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19011135_19011874_19011936_19012009_19012116_19012194_19012313_19013031
transcript_80970.known	chr7	+	1076	7	FSM	ENSMUSG00000030401.17	ENSMUST00000108468.5	1076	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	28.3279406632784	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCATTCTGTGTTTTAAAG	580	False	NA	12	True	AATAAA	-20	NA	19024993	19030085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_19025102_19027000_19027209_19027527_19027667_19027772_19027843_19028343_19028391_19029375_19029435_19029640
transcript_80972.known	chr7	+	1375	10	FSM	ENSMUSG00000003549.10	ENSMUST00000003645.9	1375	10	0	0	0	0	multi-exon	TRUE	canonical	3	315	junction_9	39.5851948880006	822	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGTGGCTCTGCGTGTTT	711	False	NA	15	True	AATAAA	-20	NA	19078702	19090449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_19079122_19079530_19079643_19082325_19082542_19084085_19084190_19084617_19084718_19086553_19086631_19088250_19088351_19089025_19089098_19089217_19089287_19090343
transcript_80984.nnic	chr7	-	672	3	NNC	ENSMUSG00000047649.10	novel	489	2	NA	NA	-217	2695	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_1	107	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAACGATTTCACAGGCCTT	1939	False	NA	NA	False	NA	NA	NA	19093625	19087243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_19087461_19093014_19093157_19093312
transcript_80985.known	chr7	-	2239	3	FSM	ENSMUSG00000047649.10	ENSMUST00000047036.10	2239	3	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	10	956	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAATGTCTTACTTTTG	2158	False	NA	-19	True	NA	NA	NA	19093406	19089938	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19091942_19093014_19093157_19093312
transcript_80986.known	chr7	-	489	2	FSM	ENSMUSG00000047649.10	ENSMUST00000176333.2	489	2	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTCTGAGCAACCCGGAA	2156	False	NA	NA	False	NA	NA	NA	19093408	19092763	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19093157_19093312
transcript_80988.known	chr7	+	1175	7	FSM	ENSMUSG00000003549.10	ENSMUST00000160369.8	1175	7	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_1	45.5485089401033	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTATCTTTCTGGGTGT	1082	False	NA	NA	False	AGTAAA	-13	NA	19079073	19088768	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_19079122_19079530_19079643_19082325_19082542_19084085_19084190_19084617_19084718_19086553_19086631_19088250
transcript_80989.known	chr7	+	3130	13	FSM	ENSMUSG00000040734.15	ENSMUST00000047621.14	3130	13	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_4	11.000946928939	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAACATCATTTTGATT	414	False	NA	NA	False	AATAAA	-15	NA	19095140	19112458	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_19095242_19102466_19102548_19102641_19102785_19103718_19104230_19104313_19104413_19104490_19104583_19105129_19105572_19106848_19107310_19109174_19109307_19109409_19109544_19109649_19109817_19111412_19111613_19111891
transcript_80990.known	chr7	+	3578	23	FSM	ENSMUSG00000030400.18	ENSMUST00000062831.16	3578	23	0	0	0	0	multi-exon	TRUE	canonical	3	88	junction_1	20.1272809394744	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGGTTTGCTTCTGATAT	NA	False	NA	13	True	AATAAA	-21	NA	19115934	19129619	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_19115985_19116203_19116304_19117868_19117947_19118023_19118087_19118226_19118341_19119547_19119665_19119754_19119872_19120631_19120756_19120856_19120954_19121037_19121172_19121253_19121423_19122064_19122184_19124031_19124102_19124173_19124244_19124323_19124426_19125451_19125516_19125889_19126012_19127173_19127267_19127357_19127431_19127554_19127626_19127700_19127845_19127963_19128108_19128276
transcript_80991.known	chr7	-	1849	13	FSM	ENSMUSG00000040714.15	ENSMUST00000108459.9	1849	13	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_12	5.52959210872636	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGTGCGATCTGCTCA	6332	False	NA	NA	False	NA	NA	NA	19133846	19128364	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19128647_19128809_19128874_19128985_19129093_19129163_19129205_19129289_19129381_19129724_19129899_19130206_19130309_19130431_19130520_19130796_19131017_19131325_19131396_19131886_19132118_19133208_19133475_19133733
transcript_80992.known	chr7	-	1823	13	FSM	ENSMUSG00000040714.15	ENSMUST00000108458.10	1823	13	0	0	0	0	multi-exon	TRUE	canonical	2	9	junction_12	5.99247212944893	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGCGATCTGCTCAATT	2149	False	NA	NA	False	NA	NA	NA	19138029	19128361	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19128647_19128809_19128874_19128985_19129093_19129163_19129205_19129289_19129381_19129724_19129899_19130206_19130309_19130431_19130520_19130796_19131017_19131325_19131396_19131886_19132118_19133208_19133475_19137945
transcript_81.known	ERCC-00171	+	489	1	FSM	ERCC-00171A	DQ854994	489	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38410	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	489	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00171_+_0_500
transcript_810.known	chr1	+	3239	14	FSM	ENSMUSG00000025911.15	ENSMUST00000144177.8	3239	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	25.1132346823944	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTTGATGCTTTTCCTAA	NA	False	NA	NA	False	TATAAA	-22	NA	9618172	9648195	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_9618377_9620131_9620170_9621941_9621983_9623147_9623202_9623542_9623698_9623847_9624045_9625762_9625841_9627224_9627331_9628357_9628511_9630333_9630433_9633733_9633813_9634021_9634119_9637005_9637164_9646415
transcript_8100.known	chr10	+	3169	13	FSM	ENSMUSG00000006498.17	ENSMUST00000165704.8	3169	13	0	0	0	0	multi-exon	FALSE	canonical	3	638	junction_7	276.779833782898	527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACCACGTAATAGCATAA	1585	False	NA	NA	False	ATTAAA	-16	NA	79690462	79700605	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
transcript_81000.nnic	chr7	+	2019	2	NNC	ENSMUSG00000002043.18	novel	955	4	NA	NA	-1084	544	intron_retention	FALSE	canonical	0	0	junction_1	0	78	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCTGTGAGCCTGCACA	NA	False	NA	NA	False	AATAAA	-13	NA	19241235	19243385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_19242310_19242440
transcript_81002.known	chr7	-	3188	2	FSM	ENSMUSG00000057667.8	ENSMUST00000077408.8	3188	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	211	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGCATTCCTAGTGCTG	NA	False	NA	NA	False	NA	NA	NA	19242292	19238410	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19241536_19242229
transcript_81006.known	chr7	+	719	5	FSM	ENSMUSG00000002043.18	ENSMUST00000147114.2	719	5	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	197.958802532244	1843	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGCAGTGCTTATCACA	505	False	NA	21	True	AGTAAA	-22	NA	19242634	19250070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_19242758_19248346_19248465_19248931_19249016_19249128_19249223_19249770
transcript_81015.known	chr7	+	785	6	FSM	ENSMUSG00000002043.18	ENSMUST00000002112.15	785	6	0	0	0	0	multi-exon	FALSE	canonical	3	436	junction_1	62.2009646227452	4489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGCAGTGCTTATCACA	507	False	NA	21	True	AGTAAA	-22	NA	19242636	19250070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_19242758_19248125_19248194_19248346_19248465_19248931_19249016_19249128_19249223_19249770
transcript_81016.known	chr7	+	651	6	FSM	ENSMUSG00000002043.18	ENSMUST00000108455.8	651	6	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_5	201.035917188944	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACCTGTGCAGTGCTTAT	521	False	NA	17	True	AGTAAA	-18	NA	19242650	19250066	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_19242758_19248125_19248194_19248346_19248465_19248931_19249016_19249128_19249223_19249886
transcript_81017.known	chr7	+	505	3	FSM	ENSMUSG00000002043.18	ENSMUST00000135972.2	505	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	285.5	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAACAGACCTGTGCAGTG	6215	False	NA	12	True	AGTAAA	-13	NA	19248344	19250061	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_19248465_19249128_19249223_19249770
transcript_81022.known	chr7	+	1530	3	FSM	ENSMUSG00000011267.9	ENSMUST00000108453.2	1530	3	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_1	5.5	477	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGGACTTTCTTGGGGT	727	False	NA	26	True	AATAAA	-21	NA	19311211	19314581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_19311554_19311741_19311886_19313537
transcript_81025.nnic	chr7	-	1014	3	NNC	ENSMUSG00000044709.7	novel	1023	3	NA	NA	-72	182	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	112.5	366	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTCTGGCTTTCCTTT	2830	False	NA	NA	False	AAGAAA	-17	NA	19307382	19298688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_19298802_19298849_19299602_19307233
transcript_8103.known	chr10	+	2369	13	FSM	ENSMUSG00000006498.17	ENSMUST00000165153.8	2369	13	0	0	0	0	multi-exon	FALSE	canonical	3	966	junction_7	243.575949255167	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACCCGAATCTTTTCCA	1589	False	NA	NA	False	NA	NA	NA	79690466	79699652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
transcript_81030.known	chr7	-	609	2	FSM	ENSMUSG00000044709.7	ENSMUST00000122055.2	609	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATGCAGATAACCCTGGC	3198	False	NA	NA	False	NA	NA	NA	19307014	19299043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19299602_19306963
transcript_81031.known	chr7	-	652	2	FSM	ENSMUSG00000044709.7	ENSMUST00000122127.2	652	2	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	0	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGATCATAAACTCAAGG	3319	False	NA	NA	False	NA	NA	NA	19306893	19299011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19299602_19306831
transcript_81032.known	chr7	-	763	2	FSM	ENSMUSG00000044709.7	ENSMUST00000051364.4	763	2	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_1	0	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGGCTGCTGTGTGTGTGT	2944	False	NA	-9	True	AATAAA	-19	NA	19307268	19298873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19299602_19307233
transcript_81033.known	chr7	-	613	2	FSM	ENSMUSG00000044709.7	ENSMUST00000208826.2	613	2	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTGCTTCGATGTAGTGA	8525	False	NA	NA	False	NA	NA	NA	19311520	19299251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19299602_19311257
transcript_81036.known	chr7	-	2151	21	FSM	ENSMUSG00000061028.8	ENSMUST00000208068.2	2151	21	0	0	0	0	multi-exon	TRUE	canonical	3	34	junction_6	53.6276747584678	520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACCACATGCTGTCCCC	NA	False	NA	-9	True	AATAAA	-21	NA	19338386	19314967	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19315084_19315305_19315331_19316156_19316240_19318079_19318127_19318208_19318268_19318394_19318456_19318704_19318749_19319014_19319273_19320265_19320536_19320636_19320853_19321749_19321792_19322515_19322590_19322670_19322750_19324163_19324261_19325014_19325164_19325917_19326003_19328397_19328478_19328831_19328934_19329383_19329482_19337114_19337231_19338336
transcript_8104.known	chr10	+	2598	13	FSM	ENSMUSG00000006498.17	ENSMUST00000095457.11	2598	13	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_3	485.428926883798	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTTCCCTGAGCCCTT	1624	False	NA	31	True	ATTAAA	-15	NA	79690501	79700193	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694905_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
transcript_81052.known	chr7	-	901	3	FSM	ENSMUSG00000061028.8	ENSMUST00000208427.2	901	3	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_1	14.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACATGCTGTCCCCTTATT	3134	False	NA	-4	True	AATAAA	-26	NA	19316911	19314962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19315084_19315305_19315331_19316156
transcript_81053.nic	chr7	-	2449	12	NIC	ENSMUSG00000002983.18	novel	2209	12	NA	NA	-96	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	91.1853982801201	258	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTTTGGGGGTCTTCTTT	NA	False	NA	-7	True	AATAAA	-14	NA	19362494	19340147	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_19340867_19345547_19345626_19345741_19345811_19346429_19346646_19347705_19347811_19349483_19349616_19350270_19350363_19351686_19351845_19353438_19353768_19356850_19356860_19361847_19361896_19362000
transcript_81058.nic	chr7	-	2440	11	NIC	ENSMUSG00000002983.18	novel	2200	11	NA	NA	-96	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_10	54.7927002437368	225	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTTTGGGGGTCTTCTTT	NA	False	NA	-7	True	AATAAA	-14	NA	19362494	19340147	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_19340867_19345547_19345626_19345741_19345811_19346429_19346646_19347705_19347811_19349483_19349616_19350270_19350363_19351686_19351845_19353438_19353768_19361847_19361896_19362000
transcript_81061.nnic	chr7	-	540	3	Genic_Genomic	ENSMUSG00000002983.18	novel	931	5	NA	NA	-27	1560	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCTGGAATTCTGGGTT	NA	False	NA	NA	False	AATAAA	-22	NA	19362425	19338581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr7_-_19338707_19338919_19339081_19362171
transcript_81066.known	chr7	-	4143	14	FSM	ENSMUSG00000002981.11	ENSMUST00000055242.11	4143	14	0	0	0	0	multi-exon	FALSE	canonical	3	1363	junction_5	136.704319631521	240	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTCCCCAACTTTGAGA	5148	False	NA	NA	False	AAAACA	-17	NA	19398958	19365495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19367888_19367980_19368149_19368802_19368939_19369232_19369329_19369585_19369777_19371002_19371097_19371393_19371639_19372041_19372163_19372856_19372943_19376976_19377095_19379766_19379926_19380640_19380765_19389642_19389756_19398858
transcript_81071.known	chr7	-	631	4	FSM	ENSMUSG00000002992.18	ENSMUST00000003074.16	631	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1.88561808316413	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTGTGGCTTCTTTTCAG	4247	False	NA	NA	False	AATAAA	-20	NA	19410789	19405503	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19405774_19407153_19407305_19407471_19407539_19410646
transcript_81072.nnic	chr7	-	627	4	NNC	ENSMUSG00000002992.18	novel	569	4	NA	NA	108	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2.49443825784929	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCGTCGTGTGGCTTCTT	7299	False	NA	NA	False	AATAAA	-15	NA	19407737	19405508	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_19405774_19407153_19407305_19407471_19407587_19407641
transcript_81073.known	chr7	-	538	3	FSM	ENSMUSG00000074336.6	ENSMUST00000003071.10	538	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	3.5	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGCATAGCTTCTCTTGA	5934	False	NA	3	True	AATAAA	-27	NA	19415404	19412007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19412238_19412534_19412668_19415229
transcript_81079.known	chr7	-	339	2	FSM	ENSMUSG00000040564.15	ENSMUST00000207978.2	339	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAAGGCAAACGCTCCCTG	NA	False	NA	-15	True	AATAAA	-8	NA	19426529	19423416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19423562_19426335
transcript_81080.known	chr7	-	432	4	FSM	ENSMUSG00000040564.15	ENSMUST00000045035.12	432	4	0	0	0	0	multi-exon	FALSE	canonical	3	965	junction_3	145.90027035235	6608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCCCTGAAGTGCTTTGG	NA	False	NA	-4	True	AATAAA	-19	NA	19426585	19423405	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19423562_19425812_19425961_19426335_19426412_19426533
transcript_81081.known	chr7	-	532	3	FSM	ENSMUSG00000040564.15	ENSMUST00000108451.4	532	3	0	0	0	0	multi-exon	FALSE	canonical	3	1274	junction_1	0.5	1935	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCCCTGAAGTGCTTTGG	NA	False	NA	-4	True	AATAAA	-19	NA	19426563	19423405	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19423562_19425812_19425961_19426335
transcript_81084.known	chr7	-	817	5	FSM	ENSMUSG00000002985.17	ENSMUST00000172983.8	817	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_4	5193.26072906031	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCAGGCCCGTGACCGCCT	NA	False	NA	NA	False	NA	NA	NA	19432963	19430544	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19431029_19431403_19431573_19432112_19432179_19432328_19432399_19432935
transcript_81091.known	chr7	-	1128	4	FSM	ENSMUSG00000002985.17	ENSMUST00000003066.16	1128	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4936.24555935199	23683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTGAGTCTCTGTGAGT	NA	False	NA	-30	True	AATAAA	-14	NA	19432977	19430196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19431029_19431403_19431573_19432112_19432198_19432935
transcript_81092.known	chr7	-	1221	3	FSM	ENSMUSG00000002985.17	ENSMUST00000173739.8	1221	3	0	0	0	0	multi-exon	FALSE	canonical	3	10421	junction_2	50	22902	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTGAGTCTCTGTGAGT	NA	False	NA	-30	True	AATAAA	-14	NA	19432332	19430196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19431029_19431403_19431573_19432112
transcript_81093.known	chr7	-	1577	10	FSM	ENSMUSG00000002984.18	ENSMUST00000093552.12	1577	10	0	0	0	0	multi-exon	TRUE	canonical	3	2342	junction_9	200.868177398407	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGAGGCCTCGGTTTTC	9881	False	NA	-13	True	NA	NA	NA	19449363	19435237	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19435783_19436772_19436876_19436990_19437068_19437193_19437317_19444657_19444764_19444842_19444945_19447593_19447687_19448217_19448286_19448905_19449185_19449282
transcript_81097.known	chr7	-	1955	6	FSM	ENSMUSG00000062300.15	ENSMUST00000108450.5	1955	6	0	0	0	0	multi-exon	FALSE	canonical	3	559	junction_1	167.41517255016	6095	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGGGGTGTTTTGTAATC	NA	False	NA	-4	True	AATAAA	-16	NA	19483458	19458085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19458795_19463962_19464112_19464536_19464655_19466839_19467137_19471936_19472300_19483139
transcript_81099.known	chr7	-	1646	9	FSM	ENSMUSG00000002984.18	ENSMUST00000032555.10	1646	9	0	0	0	0	multi-exon	FALSE	canonical	3	2643	junction_3	135.037899772619	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAAAAAAAATAGGATCTG	9894	False	NA	-29	True	NA	NA	NA	19449350	19435253	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19435783_19436772_19436876_19436990_19437068_19437193_19437317_19444657_19444764_19444842_19444945_19447593_19447687_19448217_19448286_19448905
transcript_81100.known	chr7	-	2735	9	FSM	ENSMUSG00000062300.15	ENSMUST00000075447.14	2735	9	0	0	0	0	multi-exon	FALSE	canonical	3	309	junction_4	306.654528745297	5410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGTGAAGTGAGTGGGGT	NA	False	NA	-2	True	GATAAA	-18	NA	19483498	19450568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19451713_19453120_19453208_19453357_19453422_19455277_19455432_19463962_19464112_19464536_19464655_19466839_19467137_19471936_19472300_19483139
transcript_81101.known	chr7	+	618	2	FSM	ENSMUSG00000092381.2	ENSMUST00000172483.2	618	2	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCAGCAGTGCTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	19448940	19455656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_19449199_19455296
transcript_81106.known	chr7	-	2429	15	FSM	ENSMUSG00000002980.15	ENSMUST00000003061.14	2429	15	0	0	0	0	multi-exon	TRUE	canonical	3	510	junction_11	49.5145824737624	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCGCCAGGTTCTCTTCT	3912	False	NA	-5	True	AATAAA	-26	NA	19504472	19490055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19490545_19490632_19490751_19492348_19492494_19492583_19492729_19492884_19493022_19493971_19494114_19494218_19494338_19497964_19498122_19498577_19498715_19499258_19499442_19499537_19499635_19500613_19500685_19500760_19500987_19502376_19502499_19504331
transcript_81110.known	chr7	-	1449	8	FSM	ENSMUSG00000002980.15	ENSMUST00000133271.2	1449	8	0	0	0	0	multi-exon	FALSE	canonical	3	510	junction_4	38.4102452319106	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTCGCTAGAAAGAAAGCT	3964	False	NA	NA	False	AAAAAG	-13	NA	19504420	19497597	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19498122_19498577_19498715_19499258_19499442_19499537_19499635_19500613_19500685_19500760_19500987_19502376_19502499_19504331
transcript_81115.known	chr7	-	1662	12	FSM	ENSMUSG00000040525.14	ENSMUST00000043822.8	1662	12	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	3.71283233757493	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCCCGTGTGTGACAGAG	NA	False	NA	1	True	AATAAA	-20	NA	19530734	19513642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19513722_19514697_19514773_19514894_19515002_19518727_19518806_19519162_19519325_19520107_19520240_19522893_19522982_19524324_19524463_19526032_19526155_19526433_19526591_19526733_19526881_19530357
transcript_81118.nnic	chr7	-	352	4	NNC	ENSMUSG00000040525.14	novel	1514	11	NA	NA	3523	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	4.64279609239471	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCCCGTGTGTGACAGAG	NA	False	NA	1	True	AATAAA	-20	NA	19515842	19513642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_19513722_19514697_19514773_19514894_19515002_19515751
transcript_81120.known	chr7	-	1850	9	FSM	ENSMUSG00000053175.18	ENSMUST00000120537.8	1850	9	0	0	0	0	multi-exon	TRUE	canonical	3	615	junction_1	42.6314144733669	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTTGCTTTCCATCTGTT	5729	False	NA	-8	True	AATAAA	-17	NA	19556695	19542386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19542982_19543066_19543185_19543420_19543589_19544981_19545060_19545244_19545334_19545419_19545625_19546329_19546439_19553971_19554126_19556361
transcript_81124.known	chr7	+	402	2	FSM	ENSMUSG00000087593.2	ENSMUST00000137373.2	402	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGAAGGAATGACGTGGAC	NA	False	NA	NA	False	AATAAA	-28	NA	19550477	19552550	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_19550699_19552369
transcript_81129.nnic	chr7	+	753	3	Genic_Genomic	ENSMUSG00000109424.2	novel	637	1	NA	NA	-3793	-4	multi-exon	FALSE	canonical	0	0	junction_1	0.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGCCTAGGTCTGTTGCA	NA	False	NA	NA	False	AATAAA	-17	NA	19577104	19581530	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr7_+_19577251_19579929_19580173_19581166
transcript_8113.known	chr10	+	1765	12	FSM	ENSMUSG00000006498.17	ENSMUST00000057343.16	1765	12	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_8	513.000459136617	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGCAGGAAATGGCTTGG	1608	False	NA	NA	False	ATTAAA	-16	NA	79690485	79699258	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79698282_79698376_79698486_79698704_79698811_79698890_79698978
transcript_81130.known	chr7	-	1635	6	FSM	ENSMUSG00000014686.9	ENSMUST00000014830.8	1635	6	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	1.46969384566991	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGTGTCAGCCTCTCCT	9244	False	NA	NA	False	CATAAA	-17	NA	19595224	19586021	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19586239_19587496_19587824_19589998_19590278_19591743_19592020_19592518_19592864_19595033
transcript_81133.known	chr7	-	2905	8	FSM	ENSMUSG00000040511.15	ENSMUST00000043517.8	2905	8	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_4	10.2359909243845	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCATTGTCCGAGCCTTTG	9931	False	NA	-1	True	NA	NA	NA	19655085	19637502	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19639118_19639703_19639739_19643105_19643229_19644529_19644682_19648662_19648790_19650798_19651096_19652486_19652835_19654877
transcript_81139.nnic	chr7	+	608	3	NNC	ENSMUSG00000090075.2	novel	338	2	NA	NA	-32	156	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTTTGCCTTAATTTTTC	NA	False	NA	NA	False	AATAAA	-37	NA	19654621	19661688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_19654818_19657086_19657134_19661323
transcript_81141.known	chr7	+	338	2	FSM	ENSMUSG00000090075.2	ENSMUST00000162649.2	338	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGAATTCAAAGTCAACCT	NA	False	NA	NA	False	NA	NA	NA	19654653	19661532	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_19654818_19661358
transcript_81142.known	chr7	-	1794	2	FSM	ENSMUSG00000040511.15	ENSMUST00000159261.2	1794	2	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	9978	False	NA	NA	False	NA	NA	NA	19655038	19651201	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19652835_19654877
transcript_81145.known	chr7	-	1908	5	FSM	ENSMUSG00000040498.8	ENSMUST00000043440.8	1908	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4.60977222864644	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGGCAGCGTAGTTAGTA	8228	False	NA	NA	False	NA	NA	NA	19684681	19671229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19672176_19673097_19673268_19675674_19675945_19678628_19678839_19684369
transcript_81146.known	chr7	-	883	3	FSM	ENSMUSG00000040498.8	ENSMUST00000207513.2	883	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGGTAGGCTGTGGCTTA	8239	False	NA	NA	False	NA	NA	NA	19684670	19675572	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_19675945_19678628_19678839_19684369
transcript_81148.nic	chr7	-	613	3	ISM	ENSMUSG00000040498.8	ENSMUST00000208210.2	832	4	2869	-94	2869	94	3prime_fragment	FALSE	canonical	3	9	junction_2	1	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCGGCTGCCAACACCCCA	-2	True	NA	NA	False	AATAAA	-17	NA	19675954	19672012	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_19672176_19673097_19673268_19675674
transcript_81150.known	chr7	+	801	1	FSM	ENSMUSG00000070778.6	ENSMUST00000094754.6	801	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACACTAAGTTTTCTGT	9513	False	NA	NA	False	AAAAAG	-36	NA	19687707	19688508	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_19687700_19688500
transcript_81156.known	chr7	-	645	1	FSM	ENSMUSG00000066724.4	ENSMUST00000086013.4	645	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	64871	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAAAAAATAAGGCTG	NA	False	NA	NA	False	AATAAA	-13	NA	23646715	23646070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_23646100_23646700
transcript_81157.known	chr7	-	441	1	FSM	ENSMUSG00000066724.4	ENSMUST00000208752.2	441	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCTGTCTCCACTTCCA	NA	False	NA	NA	False	GGGGCT	-44	NA	23646657	23646216	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_23646200_23646700
transcript_81159.known	chr7	+	827	6	FSM	ENSMUSG00000057101.9	ENSMUST00000206184.2	827	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	37.880865882395	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAACAACCGAACAAGCAAG	NA	False	NA	NA	False	NA	NA	NA	23781371	23803983	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_23781664_23784850_23784932_23785912_23786017_23797245_23797321_23800872_23800994_23803829
transcript_81160.known	chr7	+	3901	5	FSM	ENSMUSG00000057101.9	ENSMUST00000068975.6	3901	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_2	15.0499169432924	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCCACTTGTTTGATCTT	NA	False	NA	NA	False	AATAAA	-30	NA	23781348	23807138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_23781664_23784850_23784932_23797245_23797321_23800872_23800994_23803829
transcript_81162.known	chr7	+	1297	3	FSM	ENSMUSG00000047603.10	ENSMUST00000205736.2	1297	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	23	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGCCTTTTTGTTCATG	NA	False	NA	NA	False	NA	NA	NA	23833598	23836335	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_23833913_23834682_23834741_23835410
transcript_81163.nic	chr7	+	904	3	ISM	ENSMUSG00000047603.10	ENSMUST00000205680.2	1332	5	-49	3394	-22	636	5prime_fragment	TRUE	canonical	3	44	junction_2	1	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGAGTGTGTGTGCATT	NA	False	NA	NA	False	AATAAA	-24	NA	23833571	23836975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_23833913_23834682_23834741_23836470
transcript_81164.known	chr7	+	1024	3	FSM	ENSMUSG00000047603.10	ENSMUST00000206809.2	1024	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	23	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTTGTTCATGGTGA	NA	False	NA	NA	False	NA	NA	NA	23833652	23836339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_23833913_23834682_23834741_23835633
transcript_81167.known	chr7	+	1037	4	FSM	ENSMUSG00000068962.8	ENSMUST00000205309.2	1037	4	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_1	13.589211407093	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGAAGCCCTCCCACTGC	NA	False	NA	NA	False	NA	NA	NA	23874484	23880559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_23874575_23875533_23875592_23877174_23877302_23879797
transcript_81169.known	chr7	-	6402	4	FSM	ENSMUSG00000087598.10	ENSMUST00000086006.12	6402	4	0	0	0	0	multi-exon	TRUE	canonical	3	37	junction_1	10.4986771653491	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCACTTTGCTTCGGTAGCT	NA	False	NA	NA	False	NA	NA	NA	23907574	23893371	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_23899468_23902794_23902922_23906482_23906541_23907453
transcript_81170.nic	chr7	-	873	3	NIC	ENSMUSG00000087598.10	novel	1657	3	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	18.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTAATGAGATTGTTTTG	NA	False	NA	NA	False	ATTAAA	-21	NA	23907602	23905165	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_23905832_23906482_23906541_23907453
transcript_81171.known	chr7	-	2895	2	FSM	ENSMUSG00000087598.10	ENSMUST00000148050.2	2895	2	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACATAAAAAAAATTTTTAA	NA	False	NA	NA	False	AATAAA	-33	NA	23907552	23903744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_23906541_23907453
transcript_81173.known	chr7	+	3508	4	FSM	ENSMUSG00000055305.16	ENSMUST00000108438.10	3508	4	0	0	0	0	multi-exon	TRUE	canonical	3	7	junction_2	2.44948974278318	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCGTTTTCTCATAATAAG	NA	False	NA	NA	False	NA	NA	NA	23969844	23977219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_23970107_23971037_23971096_23972672_23972800_23974158
transcript_81175.known	chr7	-	2480	7	FSM	ENSMUSG00000050605.18	ENSMUST00000077780.14	2480	7	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	4.81028989655394	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTGGATTCTTTGTGTG	NA	False	NA	7	True	TATAAA	-23	NA	23999100	23990463	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_23991930_23992769_23992860_23994379_23994507_23995403_23995450_23996997_23997164_23997698_23997801_23998617
transcript_81176.nnic	chr7	-	2264	6	NIC	ENSMUSG00000050605.18	novel	2480	7	NA	NA	12	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_4	15.3310143173894	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTGGATTCTTTGTGTG	NA	False	NA	7	True	TATAAA	-23	NA	23999050	23990463	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_23991930_23992769_23992860_23994379_23994507_23995403_23995450_23997698_23997801_23998617
transcript_81183.known	chr7	-	2599	6	FSM	ENSMUSG00000074282.11	ENSMUST00000108436.8	2599	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	3.8262252939418	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGAAAGACAGTCACTTGA	NA	False	NA	NA	False	AGTAAA	-16	NA	24016030	24001128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_24003299_24008495_24008623_24010889_24010929_24011806_24011921_24013774_24013837_24015943
transcript_81190.known	chr7	-	2529	5	FSM	ENSMUSG00000074282.11	ENSMUST00000032673.15	2529	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	0.866025403784439	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGTTTGAATTGTATATC	NA	False	NA	NA	False	NA	NA	NA	24016091	24001220	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_24003299_24008495_24008623_24011806_24011921_24013774_24013837_24015943
transcript_81191.nnic	chr7	-	561	5	NNC	ENSMUSG00000074282.11	novel	902	4	NA	NA	-23	10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4.26468052730799	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTTTGCGTGTGTATGTT	NA	False	NA	NA	False	ATTAAA	-8	NA	24016114	24007992	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_24008080_24008495_24008623_24011806_24011921_24013774_24013837_24015943
transcript_81192.nic	chr7	-	1016	5	ISM	ENSMUSG00000074282.11	ENSMUST00000108436.8	2599	6	-84	6864	-23	10	5prime_fragment	FALSE	canonical	1	2	junction_1	4.06201920231798	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTTTGCGTGTGTATGTT	NA	False	NA	NA	False	ATTAAA	-8	NA	24016114	24007992	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_24008623_24010889_24010929_24011806_24011921_24013774_24013837_24015943
transcript_81196.known	chr7	-	610	4	FSM	ENSMUSG00000074282.11	ENSMUST00000154309.2	610	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4.78423336480244	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAATCATTGTCAGGCAC	NA	False	NA	NA	False	NA	NA	NA	24016007	24008410	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_24008623_24011806_24011921_24013774_24013837_24015785
transcript_81197.known	chr7	-	902	4	FSM	ENSMUSG00000074282.11	ENSMUST00000137781.8	902	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	0.942809041582063	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGAAATCACTTTGCG	NA	False	NA	NA	False	NA	NA	NA	24016049	24008002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_24008623_24011806_24011921_24013774_24013837_24015943
transcript_81199.known	chr7	+	1945	9	FSM	ENSMUSG00000054342.9	ENSMUST00000205428.2	1945	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.08972473588517	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGACAGCAGCTGCCATTT	NA	False	NA	NA	False	AATAAA	-9	NA	24069687	24084630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_24070021_24074096_24074193_24076707_24077130_24078558_24078695_24081076_24081188_24081586_24081706_24081896_24081967_24083433_24083608_24084146
transcript_81201.known	chr7	+	2242	14	FSM	ENSMUSG00000002210.12	ENSMUST00000002280.11	2242	14	0	0	0	0	multi-exon	TRUE	canonical	3	128	junction_3	14.7828462881374	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGGGTTTGTTCTTTCTC	NA	False	NA	19	True	AATAAA	-19	NA	24099043	24122203	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_24099317_24102816_24102973_24104951_24105027_24105112_24105378_24105459_24105558_24106945_24107059_24114363_24114476_24115923_24116020_24116345_24116432_24119438_24119546_24120000_24120109_24120237_24120367_24120544_24120690_24121724
transcript_81202.nic	chr7	+	2073	14	NIC	ENSMUSG00000002210.12	novel	784	6	NA	NA	43	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	39.9862402369118	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGGGTTTGTTCTTTCTC	NA	False	NA	19	True	AATAAA	-19	NA	24099388	24122203	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_24099493_24102816_24102973_24104951_24105027_24105112_24105378_24105459_24105558_24106945_24107059_24114363_24114476_24115923_24116020_24116345_24116432_24119438_24119546_24120000_24120109_24120237_24120367_24120544_24120690_24121724
transcript_81210.known	chr7	+	1506	7	FSM	ENSMUSG00000046223.11	ENSMUST00000002284.11	1506	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	5.84284938098603	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTGGCTAGGTCTCTTA	NA	False	NA	NA	False	NA	NA	NA	24161908	24175392	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_24161993_24164555_24164667_24166099_24166244_24171323_24171480_24171997_24172133_24173634_24173782_24174663
transcript_81213.nnic	chr7	+	1368	4	NNC	ENSMUSG00000064264.15	novel	1159	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_1	89.1777251709566	609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTCGAGCTGCGTGAGT	NA	False	NA	34	True	AATAAA	-28	NA	24206554	24215105	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_24206862_24208193_24208403_24209970_24210179_24214461
transcript_81214.nnic	chr7	+	1142	4	NNC	ENSMUSG00000064264.15	novel	1182	3	NA	NA	189	0	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_1	150.608395811418	628	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCGAGCTGCGTGAGTGT	NA	False	NA	36	True	AATAAA	-30	NA	24206743	24215107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_24206862_24208193_24208403_24209970_24210179_24214500
transcript_81220.known	chr7	+	1045	3	FSM	ENSMUSG00000064264.15	ENSMUST00000176880.2	1045	3	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	119	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGACGAGGAGGAGGGGGG	NA	False	NA	NA	False	NA	NA	NA	24206430	24214844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_24206862_24209947_24210179_24214461
transcript_81221.nic	chr7	+	1145	3	NIC	ENSMUSG00000064264.15	novel	1182	3	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	184.5	619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCGAGCTGCGTGAGTGT	NA	False	NA	36	True	AATAAA	-30	NA	24206554	24215107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_24206862_24209947_24210179_24214500
transcript_81222.known	chr7	+	1159	3	FSM	ENSMUSG00000064264.15	ENSMUST00000177205.2	1159	3	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_2	107	734	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTCGAGCTGCGTGAGT	NA	False	NA	34	True	AATAAA	-28	NA	24206554	24215105	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_24206862_24209970_24210179_24214461
transcript_81223.known	chr7	+	1182	3	FSM	ENSMUSG00000064264.15	ENSMUST00000071361.13	1182	3	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_2	41.5	868	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCGAGCTGCGTGAGTGT	NA	False	NA	36	True	AATAAA	-30	NA	24206494	24215107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_24206862_24209970_24210179_24214500
transcript_81225.known	chr7	+	435	3	FSM	ENSMUSG00000064264.15	ENSMUST00000177228.2	435	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	202.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGGAAGAGGAGACCACTG	NA	False	NA	NA	False	AATACA	-38	NA	24206523	24214528	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_24206862_24210109_24210179_24214500
transcript_81226.nnic	chr7	+	1232	3	NNC	ENSMUSG00000064264.15	novel	1045	3	NA	NA	367	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	126	605	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTCGAGCTGCGTGAGT	NA	False	NA	34	True	AATAAA	-28	NA	24206921	24215105	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_24207302_24209970_24210179_24214461
transcript_81227.nnic	chr7	+	1195	3	NNC	ENSMUSG00000064264.15	novel	1045	3	NA	NA	367	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	191.5	629	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCGAGCTGCGTGAGTGT	NA	False	NA	36	True	AATAAA	-30	NA	24206921	24215107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_24207302_24209970_24210179_24214500
transcript_81229.known	chr7	-	843	5	FSM	ENSMUSG00000011632.8	ENSMUST00000011776.8	843	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.433012701892219	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATTCCTTGTGACAGATG	NA	False	NA	NA	False	ATTAAA	-20	NA	24245543	24241082	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_24241317_24241540_24241685_24241865_24242019_24244355_24244473_24245348
transcript_8123.known	chr10	+	251	1	FSM	ENSMUSG00000111897.2	ENSMUST00000218521.2	251	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1382	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGCAGAAGAAATCGGGAA	7918	False	NA	-50	True	NA	NA	NA	79724545	79724796	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79724500_79724800
transcript_81235.known	chr7	+	2155	17	FSM	ENSMUSG00000051768.10	ENSMUST00000063249.9	2155	17	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_4	31.1527862919194	759	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGGTTTCTCTCTTAGGAG	NA	False	NA	7	True	AATAAA	-19	NA	24246574	24272863	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_24246785_24247214_24247308_24259160_24259278_24264960_24265120_24265643_24265719_24265813_24265926_24266282_24266393_24266463_24266570_24266738_24266998_24267234_24267352_24269640_24269735_24269873_24270004_24270296_24270352_24270439_24270577_24271633_24271725_24272478_24272555_24272649
transcript_8124.known	chr10	-	2950	15	FSM	ENSMUSG00000013833.16	ENSMUST00000165684.8	2950	15	0	0	0	0	multi-exon	TRUE	canonical	3	153	junction_9	18.1911617921159	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACAAAAAAAAAAAAAGA	1837	False	NA	NA	False	NA	NA	NA	79744732	79730768	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_79731245_79731460_79731545_79732181_79732399_79732592_79732786_79733398_79733533_79734069_79734281_79734730_79734938_79735034_79735244_79735930_79736087_79738256_79738363_79738830_79739263_79742598_79742769_79742872_79742981_79743324_79743491_79744651
transcript_81251.known	chr7	+	1649	5	FSM	ENSMUSG00000057454.6	ENSMUST00000080718.6	1649	5	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGTTCTCCATTTTCAT	NA	False	NA	NA	False	NA	NA	NA	24335974	24340543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_24336100_24336549_24336682_24337852_24338024_24338338_24338501_24339484
transcript_81253.known	chr7	-	1059	6	FSM	ENSMUSG00000062773.7	ENSMUST00000078001.7	1059	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	1.72046505340853	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGCGCGTGCATGCATG	1002	False	NA	NA	False	AATAAA	-21	NA	24371475	24367431	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_24367828_24367933_24368066_24369138_24369325_24369757_24369899_24370003_24370109_24371376
transcript_81259.nnic	chr7	+	1076	6	NNC	ENSMUSG00000054169.8	novel	1048	4	NA	NA	-5615	0	at_least_one_novel_splicesite	TRUE	canonical	2	5	junction_4	10.0598210719674	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGCTCCTTCGACTCTA	711	False	NA	NA	False	AATAAA	-25	NA	24471015	24484081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_24471221_24473674_24473740_24474864_24474981_24477550_24477687_24480294_24480655_24483887
transcript_81260.nnic	chr7	+	1300	6	NNC	ENSMUSG00000054169.8	novel	1048	4	NA	NA	-5615	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	8.73155198117723	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGCTCCTTCGACTCTA	711	False	NA	NA	False	AATAAA	-25	NA	24471015	24484081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_24471221_24473674_24473740_24474864_24474981_24477550_24477911_24480294_24480655_24483887
transcript_81268.known	chr7	+	750	4	FSM	ENSMUSG00000054169.8	ENSMUST00000206850.2	750	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	11.8415464455544	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGCTCCTTCGACTCTAT	1182	False	NA	NA	False	AATAAA	-26	NA	24476705	24484082	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_24476765_24477550_24477687_24480294_24480655_24483887
transcript_81270.known	chr7	+	1048	4	FSM	ENSMUSG00000054169.8	ENSMUST00000038069.9	1048	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	7.31816613336672	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGCTCCTTCGACTCTA	1107	False	NA	NA	False	AATAAA	-25	NA	24476630	24484081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_24476765_24477550_24477911_24480294_24480655_24483887
transcript_81271.known	chr7	+	662	3	FSM	ENSMUSG00000054169.8	ENSMUST00000206847.2	662	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	14	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAGGTTGGCTCCTTCGAC	1129	False	NA	NA	False	AATAAA	-21	NA	24476652	24484077	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_24476765_24480294_24480655_24483887
transcript_81272.nnic	chr7	+	771	3	Genic_Genomic	ENSMUSG00000091955.3	novel	485	1	NA	NA	-8340	-7	multi-exon	FALSE	canonical	2	5	junction_2	2.5	18109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGGGCATGATTAAA	5798	False	NA	NA	False	AATAAA	-27	NA	24553297	24562115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr7_+_24553498_24553668_24553741_24561616
transcript_81274.known	chr7	+	485	1	FSM	ENSMUSG00000091955.3	ENSMUST00000170837.3	485	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28897	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCATGATTAAACTCCTGG	NA	False	NA	NA	False	AATAAA	-34	NA	24561637	24562122	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_24561600_24562100
transcript_81275.known	chr7	+	1619	9	FSM	ENSMUSG00000011349.6	ENSMUST00000011493.6	1619	9	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	6.69771416230941	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCGAGAGTTGATTATC	NA	False	NA	4	True	NA	NA	NA	24569481	24577076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_24569598_24571902_24572131_24572204_24572360_24573346_24573424_24573622_24573804_24574331_24574459_24575172_24575234_24575373_24575549_24576577
transcript_81278.nic	chr7	+	1100	5	ISM	ENSMUSG00000011349.6	ENSMUST00000011493.6	1619	9	4084	0	4084	0	3prime_fragment	FALSE	canonical	3	13	junction_4	5.31507290636732	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCGAGAGTTGATTATC	NA	False	NA	4	True	NA	NA	NA	24573565	24577076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_24573804_24574331_24574459_24575172_24575234_24575373_24575549_24576577
transcript_81289.known	chr7	+	633	6	FSM	ENSMUSG00000040952.17	ENSMUST00000108429.8	633	6	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_1	10447.7852504729	14948	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTCTGGATCTGGTTT	NA	False	NA	26	True	AATAAA	-16	NA	24584138	24589231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_24584295_24584560_24584632_24584876_24584978_24587706_24587891_24588331_24588387_24589165
transcript_8129.known	chr10	+	5361	9	FSM	ENSMUSG00000019564.13	ENSMUST00000019708.12	5361	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	9.40661336507459	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGGCTTTTTTGATTTTG	1847	False	NA	9	True	ATTAAA	-26	NA	79762876	79790852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79763091_79766468_79767123_79767599_79767913_79782318_79782392_79784693_79784878_79785198_79785447_79786461_79786759_79787081_79787181_79787573
transcript_81291.known	chr7	+	774	6	FSM	ENSMUSG00000040952.17	ENSMUST00000108430.10	774	6	0	0	0	0	multi-exon	FALSE	canonical	3	8873	junction_5	7497.54368843557	215124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTCTGGATCTGGTTT	NA	False	NA	26	True	AATAAA	-16	NA	24583795	24589231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_24584093_24584560_24584632_24584876_24584978_24587706_24587891_24588331_24588387_24589165
transcript_81292.known	chr7	+	593	7	FSM	ENSMUSG00000040952.17	ENSMUST00000129847.8	593	7	0	0	0	0	multi-exon	FALSE	canonical	3	397	junction_3	8759.20174096298	7769	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTCTGGATCTGGTTT	NA	False	NA	26	True	AATAAA	-16	NA	24584057	24589231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_24584093_24584560_24584632_24584876_24584978_24585531_24585613_24587706_24587891_24588331_24588387_24589165
transcript_81293.known	chr7	+	1284	5	FSM	ENSMUSG00000040952.17	ENSMUST00000108428.8	1284	5	0	0	0	0	multi-exon	FALSE	canonical	3	12982	junction_1	6509.68167424491	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATCCTGGTCTGGATCTG	NA	False	NA	22	True	AATAAA	-12	NA	24584060	24589227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_24584093_24584560_24584632_24584876_24584978_24587706_24587891_24588331
transcript_81294.known	chr7	+	641	4	FSM	ENSMUSG00000040952.17	ENSMUST00000124035.2	641	4	0	0	0	0	multi-exon	FALSE	canonical	3	15652	junction_3	5490.91639791473	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTTATGCGTCTGTTGAAA	NA	False	NA	NA	False	NA	NA	NA	24584341	24588397	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_24584632_24584876_24584978_24587706_24587891_24588331
transcript_81295.known	chr7	+	395	3	FSM	ENSMUSG00000040952.17	ENSMUST00000130335.8	395	3	0	0	0	0	multi-exon	FALSE	canonical	3	8873	junction_2	3389.5	1091	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCTGGTCTGGATCTGGT	91	False	NA	24	True	AATAAA	-14	NA	24587614	24589229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_24587891_24588331_24588387_24589165
transcript_81296.known	chr7	+	286	2	FSM	ENSMUSG00000040952.17	ENSMUST00000146004.2	286	2	0	0	0	0	multi-exon	FALSE	canonical	3	8873	junction_1	0	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCTGGTCTGGATCTGGT	641	False	NA	24	True	AATAAA	-14	NA	24588164	24589229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_24588387_24589165
transcript_81298.known	chr7	+	1457	5	FSM	ENSMUSG00000003379.8	ENSMUST00000003469.8	1457	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.4790199457749	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATATTATTTTCTGGAGT	2898	False	NA	NA	False	TTTAAA	-13	NA	24596805	24601622	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_24597014_24598519_24598814_24599011_24599131_24600657_24600727_24600855
transcript_81299.nic	chr7	+	766	3	ISM	ENSMUSG00000003379.8	ENSMUST00000003469.8	1457	5	2056	339	2056	-339	3prime_fragment	FALSE	canonical	1	1	junction_1	1.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTGGCAGGAGTCATGG	4954	False	NA	NA	False	AATAAA	-15	NA	24598861	24601283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_24599131_24600657_24600727_24600855
transcript_813.known	chr1	+	2022	13	FSM	ENSMUSG00000025911.15	ENSMUST00000027044.15	2022	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	21.4416197045735	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATTAAAGAAAAAAATGTG	NA	False	NA	NA	False	ATTAAA	-41	NA	9618279	9647126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_9618377_9620131_9620170_9623147_9623202_9623542_9623698_9623847_9624045_9625762_9625841_9627224_9627331_9628357_9628511_9630333_9630433_9633733_9633813_9634021_9634119_9637005_9637164_9646415
transcript_81300.known	chr7	+	3195	29	FSM	ENSMUSG00000040940.19	ENSMUST00000206508.2	3195	29	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_11	75.6323006258515	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTGTGTGAGGGCGTT	8573	False	NA	36	True	AATATA	-18	NA	24602480	24626019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_24602554_24607140_24607183_24607278_24607360_24607735_24607850_24611481_24611581_24611734_24611778_24611979_24612227_24612564_24612595_24612823_24612924_24613044_24613142_24615442_24615479_24616228_24616367_24617319_24617426_24619055_24619202_24621295_24621443_24621749_24621833_24621965_24622092_24622231_24622347_24622434_24622536_24622788_24622867_24623083_24623160_24623227_24623396_24624220_24624309_24624400_24624488_24624676_24624745_24624825_24624913_24625208_24625373_24625448_24625549_24625664
transcript_81301.known	chr7	+	3214	29	FSM	ENSMUSG00000040940.19	ENSMUST00000117419.8	3214	29	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_1	33.6220742600902	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGTGTGTGTGAGGGCG	9924	False	NA	34	True	AATATA	-16	NA	24603831	24626017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_24603923_24607140_24607183_24607278_24607360_24607735_24607850_24611481_24611581_24611734_24611778_24611979_24612227_24612564_24612595_24612823_24612924_24613044_24613142_24615442_24615479_24616225_24616367_24617319_24617426_24619055_24619202_24621295_24621443_24621749_24621833_24621965_24622092_24622231_24622347_24622434_24622536_24622788_24622867_24623083_24623160_24623227_24623396_24624220_24624309_24624400_24624488_24624676_24624745_24624825_24624913_24625208_24625373_24625448_24625549_24625664
transcript_81306.known	chr7	+	1827	4	FSM	ENSMUSG00000040940.19	ENSMUST00000127761.8	1827	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	123.159336723702	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAGACAAAAAAAAAAAAAA	8592	False	NA	NA	False	NA	NA	NA	24602499	24609385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_24602554_24607140_24607183_24607278_24607360_24607735
transcript_81311.known	chr7	-	899	5	FSM	ENSMUSG00000003380.12	ENSMUST00000076961.9	899	5	0	0	0	0	multi-exon	FALSE	canonical	3	706	junction_2	24.5051015096857	4317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACTTTCCTGGTATTTTC	4495	False	NA	-5	True	AATAAA	-24	NA	24672179	24669176	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_24669435_24669511_24669614_24671185_24671284_24671526_24671740_24671951
transcript_81312.known	chr7	-	583	3	FSM	ENSMUSG00000003380.12	ENSMUST00000206222.2	583	3	0	0	0	0	multi-exon	FALSE	canonical	3	706	junction_2	32	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATACTTTCCTGGTATTTT	5265	False	NA	-6	True	AATAAA	-23	NA	24671409	24669177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_24669435_24669511_24669614_24671185
transcript_81313.known	chr7	-	986	4	FSM	ENSMUSG00000003380.12	ENSMUST00000205871.2	986	4	0	0	0	0	multi-exon	FALSE	canonical	3	706	junction_2	27.3292679903595	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGGCCAATACTTTCCT	-3	True	NA	-14	True	AATAAA	-15	NA	24672063	24669185	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_24669435_24669511_24669614_24671185_24671284_24671526
transcript_81314.known	chr7	-	530	4	FSM	ENSMUSG00000003380.12	ENSMUST00000206941.2	530	4	0	0	0	0	multi-exon	FALSE	canonical	2	23	junction_1	325.562419343647	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTTGGCCAATACTTTCC	5022	False	NA	-15	True	AATAAA	-14	NA	24671652	24669186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_24669391_24669511_24669614_24671185_24671284_24671526
transcript_81315.known	chr7	-	3621	23	FSM	ENSMUSG00000040907.16	ENSMUST00000080882.11	3621	23	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_18	15.2038490124504	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTGTGTGTGTTATGCTT	NA	False	NA	-1	True	AATATA	-18	NA	24705383	24677591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_24678002_24678338_24678431_24678719_24678822_24679434_24679566_24679975_24680122_24680943_24681068_24681166_24681322_24686859_24687029_24687402_24687554_24688992_24689130_24689213_24689390_24689787_24689981_24693556_24693692_24693774_24693885_24693960_24694160_24696556_24696826_24696937_24697056_24698098_24698234_24698324_24698439_24700001_24700206_24700344_24700405_24700496_24700584_24705179
transcript_81317.nnic	chr7	-	1326	8	NNC	ENSMUSG00000040907.16	novel	3621	23	NA	NA	18621	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_7	17.1499985125245	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTGTGTGTGTTATGCTT	NA	False	NA	-1	True	AATATA	-18	NA	24686699	24677591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_24678002_24678338_24678431_24678719_24678822_24679434_24679566_24679975_24680122_24680943_24681068_24681166_24681322_24686533
transcript_81318.known	chr7	+	4140	2	FSM	ENSMUSG00000045252.12	ENSMUST00000179556.2	4140	2	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAATGAGGGTGTGTATT	4955	False	NA	NA	False	AAGAAA	-10	NA	24776629	24782917	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_24776812_24778959
transcript_81319.known	chr7	+	3145	2	FSM	ENSMUSG00000045252.12	ENSMUST00000053410.11	3145	2	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTTTTGTCAGGCCTAG	5034	False	NA	22	True	AATAAA	-18	NA	24776708	24781905	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_24776908_24778959
transcript_81320.known	chr7	+	1003	3	FSM	ENSMUSG00000074274.8	ENSMUST00000098678.8	1003	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTTGTGTGTGTTTGCTT	NA	False	NA	NA	False	AATAAA	-16	NA	24851881	24856052	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_24852052_24854746_24855046_24855518
transcript_81322.known	chr7	-	4594	5	FSM	ENSMUSG00000054499.10	ENSMUST00000206750.2	4594	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_4	29.7237278954037	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATATCTTGTGTCATGTCT	NA	False	NA	-4	True	NA	NA	NA	24919284	24899339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_24903357_24910573_24910724_24916969_24917093_24918225_24918457_24919211
transcript_81323.nnic	chr7	-	1857	5	NIC	ENSMUSG00000054499.10	novel	1942	6	NA	NA	-41	0	combination_of_known_splicesites	FALSE	canonical	3	36	junction_4	23.466731770743	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTCCAGGCTCTCCGGTAC	NA	False	NA	-9	True	AATAAA	-26	NA	24919337	24902265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_24903357_24910573_24910724_24916969_24917093_24918225_24918593_24919211
transcript_81324.known	chr7	-	2260	11	FSM	ENSMUSG00000057177.13	ENSMUST00000071739.12	2260	11	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_10	34.6278789416851	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTGTCTGGCTGCCTGTG	NA	False	NA	0	True	AATAAA	-21	NA	24937276	24927682	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_24928356_24928889_24928998_24929275_24929466_24930029_24930126_24930209_24930308_24931059_24931167_24931258_24931390_24932998_24933110_24933252_24933337_24934977_24935166_24936802
transcript_81325.nic	chr7	+	1054	5	ISM	ENSMUSG00000005442.14	ENSMUST00000165239.3	3500	14	2038	5090	178	568	internal_fragment	TRUE	canonical	3	46	junction_2	2.54950975679639	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTACTGAGCACTTACTACA	2528	False	NA	NA	False	AATACA	-19	NA	24984272	24985677	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_24984424_24984503_24984739_24984834_24984965_24985058_24985242_24985322
transcript_8133.known	chr10	+	3911	10	FSM	ENSMUSG00000035754.9	ENSMUST00000045247.9	3911	10	0	0	0	0	multi-exon	FALSE	canonical	3	1673	junction_5	33.7828943493195	2307	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAATGCTGCTGCTACTT	2286	False	NA	NA	False	NA	NA	NA	79795985	79806037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79796207_79796835_79796947_79800759_79800894_79801043_79801186_79801813_79801958_79802039_79802105_79802178_79802304_79802393_79802561_79803153_79803223_79803304
transcript_81330.known	chr7	-	901	6	FSM	ENSMUSG00000005447.13	ENSMUST00000005583.12	901	6	0	0	0	0	multi-exon	TRUE	canonical	3	245	junction_5	66.0714764478591	3184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTTTTCTGCTTTATG	8499	False	NA	-2	True	ATTAAA	-15	NA	24997411	24994473	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_24994802_24995545_24995669_24995745_24995863_24996510_24996601_24996796_24996896_24997267
transcript_81338.known	chr7	-	679	5	FSM	ENSMUSG00000005447.13	ENSMUST00000155118.2	679	5	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_4	70.1141925718324	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGTGGCAAA	8548	False	NA	NA	False	NA	NA	NA	24997362	24995390	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_24995669_24995745_24995863_24996510_24996601_24996796_24996896_24997267
transcript_8134.known	chr10	-	2225	11	FSM	ENSMUSG00000013858.15	ENSMUST00000052885.14	2225	11	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_4	19.7891384350103	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGTGTAGTTCCTCAGCTC	NA	False	NA	-17	True	AATAAA	-18	NA	79820164	79812951	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_79813688_79813796_79813897_79814021_79814155_79814225_79814310_79814381_79814440_79814526_79814628_79814701_79814825_79814931_79815043_79815124_79815225_79815329_79815588_79819743
transcript_81341.known	chr7	+	1240	3	FSM	ENSMUSG00000058741.5	ENSMUST00000080288.5	1240	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	1	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTTGATTTTCAGTGAGT	2125	False	NA	NA	False	AATAAA	-14	NA	25000835	25003557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_25000900_25002297_25002923_25003006
transcript_81342.known	chr7	-	698	5	FSM	ENSMUSG00000063651.12	ENSMUST00000167591.8	698	5	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCACCTATAAGTTTTTAT	7768	False	NA	NA	False	AATAAA	-15	NA	25069128	25067044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_25067263_25067390_25067528_25067790_25067902_25068339_25068533_25069089
transcript_81349.nnic	chr7	+	959	4	NNC	ENSMUSG00000053714.9	novel	2430	6	NA	NA	1011	-21332	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	4.32049379893857	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAATGTAGTAATAATACAA	7378	False	NA	NA	False	AATAAA	-23	NA	25095849	25117631	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_25095989_25096114_25096332_25116825_25116935_25117137
transcript_8135.known	chr10	+	2460	7	FSM	ENSMUSG00000004665.11	ENSMUST00000004784.11	2460	7	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_2	7.8616509433805	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGGTGGCACACGCCTT	1769	False	NA	NA	False	NA	NA	NA	79824417	79831896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79824575_79827193_79827316_79828106_79828174_79828276_79828415_79829047_79829165_79829261_79829409_79830184
transcript_81352.known	chr7	-	3613	10	FSM	ENSMUSG00000003123.16	ENSMUST00000003207.11	3613	10	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_6	4.8099690715363	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTCTGCCTGCCTGTGAT	NA	False	NA	NA	False	NA	NA	NA	25095804	25078951	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_25079599_25079950_25080382_25082575_25082753_25082877_25083106_25083797_25084090_25084204_25084391_25084604_25084751_25084861_25084953_25087542_25088079_25094925
transcript_81353.known	chr7	-	760	4	FSM	ENSMUSG00000060188.7	ENSMUST00000200880.4	760	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTATATGTGTGTATGTA	9214	False	NA	NA	False	ATTAAA	-18	NA	25112311	25099477	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_25099870_25101573_25101676_25102281_25102363_25112126
transcript_81354.known	chr7	-	674	1	FSM	ENSMUSG00000108518.2	ENSMUST00000206270.2	674	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTCACTGGAACCAAACCT	2274	False	NA	NA	False	NA	NA	NA	25119251	25118577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_25118600_25119300
transcript_81355.known	chr7	-	3656	8	FSM	ENSMUSG00000074272.11	ENSMUST00000098666.9	3656	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	11.2122382116278	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCACTTTGTGGGGTTTTC	2848	False	NA	-1	True	AATAAA	-21	NA	25177028	25161131	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_25163326_25164273_25164306_25165741_25165863_25171222_25171499_25173222_25173478_25173944_25174230_25175768_25176129_25176895
transcript_81356.known	chr7	-	1478	7	FSM	ENSMUSG00000074272.11	ENSMUST00000098668.3	1478	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	8	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAACAAAACAAACCAGA	2917	False	NA	NA	False	NA	NA	NA	25176959	25162753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_25163326_25164273_25164306_25164892_25164946_25165741_25165863_25171222_25171499_25175768_25176129_25176895
transcript_81357.known	chr7	-	1061	6	FSM	ENSMUSG00000074272.11	ENSMUST00000206687.2	1061	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	9.62081077664455	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTACACATGCGCGCGCGC	2917	False	NA	NA	False	NA	NA	NA	25176959	25163117	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_25163326_25164273_25164306_25165741_25165863_25171222_25171499_25175768_25176129_25176895
transcript_81369.known	chr7	+	1465	6	FSM	ENSMUSG00000057229.12	ENSMUST00000077338.12	1465	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	20.2938414303453	695	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGGCCTTTCCTCCCA	1739	False	NA	39	True	NA	NA	NA	25318838	25324976	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_25318886_25320320_25320518_25321768_25321850_25323223_25323364_25323451_25323615_25324139
transcript_81371.known	chr7	+	2387	6	FSM	ENSMUSG00000057229.12	ENSMUST00000085953.5	2387	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	50.2330568450697	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACCCTGTGGCCTTTCCTC	1818	False	NA	36	True	NA	NA	NA	25318917	25324973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_25319890_25320320_25320518_25321768_25321850_25323223_25323364_25323451_25323615_25324139
transcript_81376.known	chr7	+	1463	2	FSM	ENSMUSG00000059479.8	ENSMUST00000076034.8	1463	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCAGGAGCGATTTCTTCC	9963	False	NA	12	True	NA	NA	NA	25327062	25328917	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_25327148_25327539
transcript_81377.known	chr7	+	1844	1	FSM	ENSMUSG00000059479.8	ENSMUST00000206824.2	1844	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCCAAGGCCAGGAGCGAT	9967	False	NA	5	True	NA	NA	NA	25327066	25328910	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_25327100_25328900
transcript_81378.known	chr7	-	1899	9	FSM	ENSMUSG00000060376.8	ENSMUST00000071329.8	1899	9	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_4	24.6373699895098	484	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCTTCCTTCGTCTCTG	9682	False	NA	-9	True	AGTAAA	-19	NA	25358406	25329370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_25329859_25330424_25330597_25330766_25330909_25331062_25331270_25332664_25332827_25337586_25337696_25340881_25340969_25341068_25341252_25358057
transcript_8138.nnic	chr10	+	913	5	NNC	ENSMUSG00000035722.16	novel	6696	47	NA	NA	16222	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	25.8891869319992	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGCCACGGCTGAGTTTG	8775	False	NA	10	True	AATAAA	-19	NA	79849670	79851406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_79849815_79849998_79850167_79850301_79850395_79850780_79851022_79851139
transcript_81384.known	chr7	-	485	4	FSM	ENSMUSG00000061702.11	ENSMUST00000108404.8	485	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.62466929133727	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACATCGCCCAGAAACGAG	NA	False	NA	NA	False	NA	NA	NA	25374472	25368666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_25368754_25369910_25370061_25372849_25373086_25374460
transcript_81386.known	chr7	-	550	4	FSM	ENSMUSG00000061702.11	ENSMUST00000108405.2	550	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.62466929133727	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACATCGCCCAGAAACGAG	NA	False	NA	NA	False	NA	NA	NA	25374515	25368666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_25368776_25369910_25370061_25372849_25373086_25374460
transcript_81387.known	chr7	-	912	3	FSM	ENSMUSG00000061702.11	ENSMUST00000150306.2	912	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACACAAAAATAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	25374544	25369468	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_25370061_25372849_25373086_25374460
transcript_81388.known	chr7	+	1020	6	FSM	ENSMUSG00000061286.8	ENSMUST00000079634.8	1020	6	0	0	0	0	multi-exon	FALSE	canonical	3	1190	junction_2	58.9528625259198	8737	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGGTGTCTGGAGAGTAC	NA	False	NA	31	True	ATTAAA	-43	NA	25358588	25367457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_25358809_25362561_25362676_25363751_25363874_25364845_25364987_25365677_25365768_25367124
transcript_81389.known	chr7	+	5068	2	FSM	ENSMUSG00000061286.8	ENSMUST00000205275.2	5068	2	0	0	0	0	multi-exon	FALSE	canonical	3	1361	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGGTGTCTGGAGAGTAC	NA	False	NA	31	True	ATTAAA	-43	NA	25358636	25367457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_25358809_25362561
transcript_81390.known	chr7	+	682	5	FSM	ENSMUSG00000061286.8	ENSMUST00000205966.2	682	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	557.079606070802	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCCACCACCAAGGGGCT	NA	False	NA	NA	False	NA	NA	NA	25358636	25365731	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_25358809_25362561_25362676_25363672_25363874_25364845_25364987_25365677
transcript_81391.known	chr7	-	877	4	FSM	ENSMUSG00000061702.11	ENSMUST00000079439.10	877	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2.16024689946929	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGAGTCTGTCTGTGTTTG	NA	False	NA	NA	False	ATTAAA	-18	NA	25374591	25368563	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_25368924_25369910_25370061_25372849_25373086_25374460
transcript_81392.known	chr7	+	1680	7	FSM	ENSMUSG00000061286.8	ENSMUST00000206561.2	1680	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	473.16643184214	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCCCGGCTGTTCTTTA	NA	False	NA	NA	False	NA	NA	NA	25358615	25370793	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_25358809_25362561_25362676_25363751_25363874_25364845_25364987_25365677_25365768_25367124_25367229_25369877
transcript_81393.known	chr7	+	995	4	FSM	ENSMUSG00000063439.8	ENSMUST00000205658.2	995	4	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_2	1.69967317119759	678	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGTGCCTCCTTGTATC	NA	False	NA	8	True	AATAAA	-19	NA	25380204	25385983	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_25380404_25380807_25380900_25382715_25382842_25385405
transcript_81400.known	chr7	-	3032	5	FSM	ENSMUSG00000002608.9	ENSMUST00000002683.3	3032	5	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	5.52268050859363	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATTCATCTGTTATGTAA	NA	False	NA	-3	True	ATTAAA	-24	NA	25418513	25410530	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_25412539_25413777_25413908_25414175_25414446_25415159_25415613_25418342
transcript_81401.known	chr7	-	1158	4	FSM	ENSMUSG00000002608.9	ENSMUST00000154143.8	1158	4	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_2	5.43650214343336	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAACGCAGTGTTGACGAA	NA	False	NA	NA	False	NA	NA	NA	25418428	25413558	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_25413908_25414175_25414446_25415159_25415613_25418342
transcript_81403.known	chr7	-	1240	8	FSM	ENSMUSG00000040725.14	ENSMUST00000108401.3	1240	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	386.110907192559	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCCACATCCGATTTCTT	9598	False	NA	NA	False	AATAAA	-22	NA	25454126	25436014	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_25436187_25440252_25440366_25442351_25442452_25444517_25444658_25445772_25445847_25447747_25447902_25450289_25450416_25453765
transcript_81407.known	chr7	-	3784	15	FSM	ENSMUSG00000040725.14	ENSMUST00000206832.2	3784	15	0	0	0	0	multi-exon	FALSE	canonical	3	866	junction_14	88.3957070247654	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGCAGGGTTGAAACCCT	9542	False	NA	-28	True	AATAAA	-25	NA	25454182	25420589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_25421789_25422230_25422423_25423979_25424270_25425348_25425640_25426159_25426329_25432440_25432570_25432668_25432792_25433983_25434251_25440252_25440366_25442351_25442452_25444517_25444658_25445772_25445847_25447747_25447902_25450289_25450416_25453765
transcript_81408.known	chr7	-	3354	15	FSM	ENSMUSG00000040725.14	ENSMUST00000043765.14	3354	15	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_14	237.54999473795	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAGGAGTCGTGGTAGTT	9549	False	NA	NA	False	NA	NA	NA	25454175	25420906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_25421789_25422230_25422423_25423979_25424270_25425348_25425640_25426159_25426329_25432440_25432570_25432668_25432792_25433983_25434251_25440252_25440366_25442351_25442452_25444517_25444658_25445772_25445847_25447747_25447902_25450289_25450416_25453871
transcript_8141.nic	chr10	+	429	3	ISM	ENSMUSG00000035722.16	ENSMUST00000132517.8	6696	47	-37	17580	-37	-17561	5prime_fragment	FALSE	canonical	3	16	junction_1	2	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGATGTCTCCCCGCTCCA	5973	False	NA	NA	False	AATAGA	-18	NA	79832290	79833826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_79832423_79833441_79833515_79833602
transcript_81410.known	chr7	-	2745	9	FSM	ENSMUSG00000040703.12	ENSMUST00000043314.10	2745	9	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_7	4.7368238303741	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGGACCCCCTCTGCCTGT	1604	False	NA	-6	True	AATAAA	-18	NA	25516078	25501899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_25503185_25503340_25503483_25505295_25505484_25507468_25507611_25508603_25508784_25508862_25509024_25511026_25511177_25514309_25514476_25515747
transcript_81411.nnic	chr7	+	976	3	NNC	ENSMUSG00000108415.2	novel	605	3	NA	NA	-21	391	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	2	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATGAGCATTGCGTCTAC	NA	False	NA	NA	False	ATTAAA	-19	NA	25559543	25569699	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_25559652_25563155_25563191_25568866
transcript_81412.known	chr7	+	605	3	FSM	ENSMUSG00000108415.2	ENSMUST00000206564.2	605	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	25559564	25569308	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_25559652_25568227_25568304_25568866
transcript_8142.nnic	chr10	+	594	3	NNC	ENSMUSG00000035722.16	novel	6696	47	NA	NA	17029	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	34	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGCCACGGCTGAGTTTG	9582	False	NA	10	True	AATAAA	-19	NA	79850477	79851406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_79850564_79850780_79851022_79851139
transcript_81435.known	chr7	+	1631	9	FSM	ENSMUSG00000078787.10	ENSMUST00000108385.3	1631	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	2.78107443266087	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAAACTTTTATTTCTTGG	NA	False	NA	NA	False	AATACA	-18	NA	26854506	26858093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_26854729_26855057_26855221_26855581_26855732_26855940_26856102_26856642_26856820_26856895_26857038_26857138_26857327_26857576_26857719_26857807
transcript_8144.known	chr10	+	3499	22	FSM	ENSMUSG00000035697.15	ENSMUST00000043311.7	3499	22	0	0	0	0	multi-exon	TRUE	canonical	3	46	junction_7	15.7468637773006	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGCCCGATCTTGTTCTT	820	False	NA	12	True	AATAAA	-17	NA	79855486	79867302	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79855633_79856523_79856668_79856784_79856870_79856955_79857029_79857222_79857290_79857379_79857518_79857628_79857694_79857910_79858022_79858108_79858190_79860496_79860686_79861242_79861381_79861989_79862181_79862266_79862392_79862490_79862569_79862656_79862762_79862866_79863040_79863372_79863562_79863654_79863793_79864490_79864718_79864806_79865018_79866122_79866211_79866565
transcript_81444.known	chr7	-	1756	6	FSM	ENSMUSG00000058709.12	ENSMUST00000108382.2	1756	6	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_5	218.816452763498	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGGGTTTTGACCTGGG	NA	False	NA	NA	False	NA	NA	NA	26865838	26858412	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864044_26865154_26865740
transcript_81445.known	chr7	-	2107	6	FSM	ENSMUSG00000058709.12	ENSMUST00000080058.11	2107	6	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_5	57.8840219749803	553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACTTGTATTCCTCTCTG	NA	False	NA	-3	True	AATAAA	-20	NA	26866227	26858082	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864044_26865154_26866108
transcript_81448.nnic	chr7	-	1726	6	NNC	ENSMUSG00000058709.12	novel	2107	6	NA	NA	22	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	232.127206505399	387	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACTTGTATTCCTCTCTG	NA	False	NA	-3	True	AATAAA	-20	NA	26866205	26858082	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864403_26865154_26866108
transcript_81450.nnic	chr7	-	1262	6	NNC	ENSMUSG00000058709.12	novel	2107	6	NA	NA	22	0	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_4	214.357085257287	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACTTGTATTCCTCTCTG	NA	False	NA	-3	True	AATAAA	-20	NA	26866205	26858082	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864867_26865154_26866108
transcript_81463.known	chr7	-	1690	9	FSM	ENSMUSG00000095538.2	ENSMUST00000154724.2	1690	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	300.324381918951	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTTTCGGCCTCTGTC	NA	False	NA	-7	True	CATAAA	-13	NA	26880511	26867854	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_26868230_26872061_26872193_26872288_26872385_26873846_26874002_26874140_26874204_26875203_26875664_26879593_26879705_26880124_26880259_26880346
transcript_81473.known	chr7	-	572	4	FSM	ENSMUSG00000089661.10	ENSMUST00000121848.2	572	4	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_1	9.2736184954957	1277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTTGTCTCTTTGGTTTT	NA	False	NA	-2	True	AATACA	-16	NA	26880582	26879168	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_26879260_26879593_26879705_26880124_26880259_26880346
transcript_81475.known	chr7	-	962	3	FSM	ENSMUSG00000089661.10	ENSMUST00000127491.2	962	3	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_1	10.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTTGTCTCTTTGGTTTT	NA	False	NA	-2	True	AATACA	-16	NA	26880552	26879168	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_26879260_26879593_26880259_26880346
transcript_81476.known	chr7	-	1192	8	FSM	ENSMUSG00000053291.16	ENSMUST00000093040.13	1192	8	0	0	0	0	multi-exon	FALSE	canonical	3	670	junction_1	28.7402157263998	2434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGGCCTCTGTCATTCTG	NA	False	NA	-1	True	CATAAA	-19	NA	26878321	26867848	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_26868230_26872061_26872193_26872288_26872385_26873846_26874002_26874140_26874204_26875203_26875319_26875582_26875664_26878151
transcript_81477.known	chr7	-	1372	7	FSM	ENSMUSG00000053291.16	ENSMUST00000134462.8	1372	7	0	0	0	0	multi-exon	FALSE	canonical	3	670	junction_1	25.5451669705946	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTCGGCCTCTGTCATT	NA	False	NA	-4	True	CATAAA	-16	NA	26878240	26867851	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_26868230_26872061_26872193_26872288_26872385_26873846_26874002_26874140_26874204_26875203_26875664_26878151
transcript_81479.known	chr7	+	1748	7	FSM	ENSMUSG00000078786.10	ENSMUST00000179391.8	1748	7	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	4.48763733927875	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGAGACTTGGTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	26895205	26903745	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_26895533_26896330_26896792_26899978_26900048_26900444_26900570_26901832_26901963_26902051_26902123_26903180
transcript_8148.nnic	chr10	+	1434	5	NNC	ENSMUSG00000035697.15	novel	3948	23	NA	NA	6642	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	39.7617907041421	107	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCCGATCTTGTTCTTT	2532	False	NA	13	True	AATAAA	-18	NA	79864218	79867303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_79864389_79864490_79864718_79864806_79865018_79866122_79866211_79866565
transcript_81483.known	chr7	-	3247	7	FSM	ENSMUSG00000003752.10	ENSMUST00000003850.8	3247	7	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	5.28099317258495	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGGGTATTTTCTTGG	NA	False	NA	-2	True	AATAAA	-15	NA	26928053	26906596	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_26907870_26911736_26911809_26912384_26912487_26913800_26914006_26916376_26916591_26919024_26919128_26926775
transcript_81488.known	chr7	-	1690	1	FSM	ENSMUSG00000061479.16	ENSMUST00000206439.2	1690	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	202	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	26895578	26893888	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_26893900_26895600
transcript_81489.known	chr7	-	1336	7	FSM	ENSMUSG00000061479.16	ENSMUST00000122202.8	1336	7	0	0	0	0	multi-exon	FALSE	canonical	3	597	junction_6	627.600567417065	10420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTGTTGTCTGCTTTAT	NA	False	NA	-8	True	ATTAAA	-26	NA	26895670	26886431	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868_26894982_26895418
transcript_81490.known	chr7	+	2181	15	FSM	ENSMUSG00000003762.14	ENSMUST00000003860.13	2181	15	0	0	0	0	multi-exon	TRUE	canonical	3	74	junction_1	14.7544528041883	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTTTCTCTCTGTGCTA	NA	False	NA	22	True	AATAAA	-22	NA	26932447	26957375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_26932599_26932889_26932998_26933126_26933247_26933365_26933433_26936802_26936881_26939221_26939345_26939464_26939551_26941403_26941545_26941636_26941719_26942727_26942822_26949711_26949854_26949960_26950069_26951685_26951752_26956036_26956124_26956647
transcript_81492.nnic	chr7	+	2132	15	NNC	ENSMUSG00000003762.14	novel	2276	14	NA	NA	-37	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	26.4262547247148	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCAGTTCTTTTCTCTCTG	NA	False	NA	17	True	AATAAA	-17	NA	26932600	26957370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_26932708_26932889_26932998_26933126_26933247_26933365_26933433_26936802_26936881_26939221_26939345_26939464_26939551_26941403_26941545_26941636_26941719_26942727_26942822_26949711_26949854_26949960_26950069_26951685_26951752_26956036_26956124_26956647
transcript_81496.known	chr7	+	1228	5	FSM	ENSMUSG00000003762.14	ENSMUST00000142910.8	1228	5	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_1	8.55862138431185	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCCAGTTCTTTTCTCTC	NA	False	NA	15	True	AATAAA	-15	NA	26949607	26957368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_26949854_26949960_26950069_26951685_26951752_26956036_26956124_26956647
transcript_81502.nnic	chr7	-	2104	9	NNC	ENSMUSG00000040488.19	novel	5118	30	NA	NA	-601	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_8	184.947289788199	278	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCGGCCTCTGCCTGCCTT	NA	False	NA	-6	True	ATTAAA	-16	NA	27010704	27004564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_27004976_27005491_27005645_27005986_27006368_27007192_27007346_27008345_27008493_27008710_27008840_27009605_27009678_27009945_27010213_27010313
transcript_81509.known	chr7	-	5386	33	FSM	ENSMUSG00000040488.19	ENSMUST00000038618.13	5386	33	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_32	158.898146917294	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTCTGCCTGCCTTTTTC	NA	False	NA	-2	True	ATTAAA	-20	NA	27037117	27004560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_27004976_27005491_27005645_27005986_27006368_27007192_27007346_27008345_27008493_27008710_27008840_27009605_27009678_27009945_27010213_27013661_27013809_27018835_27018962_27019049_27019182_27021446_27021579_27021713_27021837_27022235_27022362_27022566_27022696_27023511_27023632_27023718_27023845_27024443_27024687_27025102_27025229_27025911_27026038_27026116_27026249_27026685_27026938_27027062_27027213_27027610_27027776_27028164_27028288_27028392_27028468_27028803_27028907_27028995_27029244_27029551_27029744_27034261_27034372_27034821_27034961_27035077_27035137_27036852
transcript_81510.known	chr7	-	867	5	FSM	ENSMUSG00000040488.19	ENSMUST00000148594.8	867	5	0	0	0	0	multi-exon	FALSE	canonical	3	513	junction_1	17.7200451466693	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACACAACCTGTGAGACAC	NA	False	NA	NA	False	ATTAAA	-22	NA	27010103	27006984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_27007346_27008345_27008493_27008710_27008840_27009605_27009678_27009945
transcript_81511.known	chr7	-	518	3	FSM	ENSMUSG00000040488.19	ENSMUST00000129471.2	518	3	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_1	13	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCGGCGACGCTGCGTCTC	NA	False	NA	NA	False	NA	NA	NA	27009887	27008385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_27008493_27008710_27008840_27009605
transcript_81512.known	chr7	-	2358	18	FSM	ENSMUSG00000089832.9	ENSMUST00000003857.7	2358	18	0	0	0	0	multi-exon	FALSE	canonical	3	272	junction_5	29.8825845289775	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTATAGTCTTGGTTTG	NA	False	NA	-28	True	AATAAA	-17	NA	27055444	27041557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_27041970_27042070_27042186_27042667_27042847_27044064_27044162_27044597_27044754_27046426_27046598_27047756_27047874_27047958_27048047_27049916_27050033_27051120_27051312_27051404_27051496_27052019_27052182_27053796_27053878_27054150_27054210_27054638_27054713_27054825_27054872_27054997_27055052_27055295
transcript_81513.known	chr7	-	2412	17	FSM	ENSMUSG00000089832.9	ENSMUST00000123190.8	2412	17	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	84.1649932795696	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTGTTTATAGTCTTGG	NA	False	NA	-32	True	AATAAA	-13	NA	27055379	27041561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_27041970_27042070_27042183_27042667_27042847_27044064_27044162_27044597_27044754_27046426_27046598_27047756_27047874_27047958_27048047_27049916_27050033_27051120_27051312_27051404_27051496_27052019_27052182_27053796_27053878_27054150_27054210_27054638_27054713_27054825_27055052_27055295
transcript_8152.nic	chr10	+	1517	4	ISM	ENSMUSG00000035697.15	ENSMUST00000150022.2	2980	15	6661	-7	6661	0	3prime_fragment	FALSE	canonical	3	84	junction_1	10.6249183003395	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCCGATCTTGTTCTTT	2551	False	NA	13	True	AATAAA	-18	NA	79864237	79867303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_79864718_79864806_79865018_79866122_79866211_79866565
transcript_81525.known	chr7	-	1140	6	FSM	ENSMUSG00000089832.9	ENSMUST00000148933.8	1140	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_5	134.483604948707	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACACTGTTTATAGTCTTG	NA	False	NA	-33	True	AATAAA	-12	NA	27045027	27041562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_27041970_27042070_27042186_27042667_27042847_27044064_27044162_27044597_27044754_27044841
transcript_81526.nnic	chr7	-	1064	6	NNC	ENSMUSG00000089832.9	novel	2358	18	NA	NA	-63	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_5	134.878612092503	273	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTATAGTCTTGGTTTG	NA	False	NA	-28	True	AATAAA	-17	NA	27045090	27041557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_27041970_27042070_27042186_27042667_27042847_27044064_27044162_27044597_27044754_27044985
transcript_81530.nnic	chr7	-	1397	4	NNC	ENSMUSG00000092367.2	novel	556	7	NA	NA	-4000	-3734	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	12.4988888395018	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGCTGGTTTGTTCGTGTA	NA	False	NA	0	True	AATAAA	-20	NA	27060844	27055807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_27056876_27059167_27059211_27059359_27059534_27060732
transcript_81535.known	chr7	+	421	2	FSM	ENSMUSG00000108416.2	ENSMUST00000138087.3	421	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACTGAGCCCAGTCTTCC	-4	True	NA	NA	False	AAGAAA	-3	NA	27132560	27133794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_27132800_27133612
transcript_81536.nic	chr7	-	1207	2	ISM	ENSMUSG00000011751.17	ENSMUST00000108362.8	4861	18	34625	0	34625	0	3prime_fragment	FALSE	canonical	3	38	junction_1	0	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGCTGGTTTGTTCGTGTA	NA	False	NA	0	True	AATAAA	-20	NA	27059306	27055807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_27056876_27059167
transcript_81542.known	chr7	+	1028	5	FSM	ENSMUSG00000040466.17	ENSMUST00000037399.16	1028	5	0	0	0	0	multi-exon	FALSE	canonical	2	274	junction_1	67.0834368529222	2763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGATTGATTGATTGATTG	NA	False	NA	NA	False	TTTAAA	-18	NA	27147402	27165569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_27147622_27158680_27158846_27158987_27159078_27161991_27162121_27165144
transcript_81546.known	chr7	+	951	4	FSM	ENSMUSG00000040466.17	ENSMUST00000108358.8	951	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	187.642094306037	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTGTGATTATTTTGGT	NA	False	NA	60	True	NA	NA	NA	27147456	27165423	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_27147622_27158680_27159059_27161991_27162121_27165144
transcript_81549.known	chr7	+	509	3	FSM	ENSMUSG00000040466.17	ENSMUST00000133750.8	509	3	0	0	0	0	multi-exon	FALSE	canonical	2	274	junction_1	60	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACTGAGCACCAACTGTG	NA	False	NA	9	True	ATTAAA	-22	NA	27147478	27159188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_27147622_27158680_27158846_27158987
transcript_81551.known	chr7	+	1504	1	FSM	ENSMUSG00000040466.17	ENSMUST00000207799.2	1504	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	27147485	27148989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_27147500_27149000
transcript_81553.known	chr7	+	1329	2	FSM	ENSMUSG00000055200.8	ENSMUST00000068641.8	1329	2	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	0	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGAATTGTAATTAAATCT	NA	False	NA	84	True	AATAAA	-16	NA	27173192	27176789	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_27173297_27175564
transcript_81554.known	chr7	+	1233	2	FSM	ENSMUSG00000008384.9	ENSMUST00000008528.8	1233	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGCTTCTTTGCAT	6589	False	NA	12	True	ATTAAA	-22	NA	27186334	27189741	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_27186504_27188677
transcript_81555.known	chr7	+	366	2	FSM	ENSMUSG00000008384.9	ENSMUST00000135881.2	366	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCCTGCCGCCTGAGCC	7054	False	NA	NA	False	NA	NA	NA	27186799	27188932	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_27186911_27188677
transcript_81556.known	chr7	+	4497	3	FSM	ENSMUSG00000053198.15	ENSMUST00000065487.7	4497	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	5	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATGTGTCTTGGTTCTCG	NA	False	NA	NA	False	AATAAA	-15	NA	27207230	27219466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_27207529_27214675_27214873_27215464
transcript_81557.nnic	chr7	+	1999	4	Fusion	ENSMUSG00000053198.15_ENSMUSG00000040424.16	novel	2926	3	NA	NA	-2	0	multi-exon	FALSE	canonical	1	1	junction_1	2.62466929133727	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCTCCTGCCTGTTACC	NA	False	NA	NA	False	AATAAA	-14	NA	27207223	27230600	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr7_+_27207529_27227720_27228078_27228373_27229223_27230112
transcript_8156.known	chr10	-	1148	7	FSM	ENSMUSG00000004667.19	ENSMUST00000004786.10	1148	7	0	0	0	0	multi-exon	FALSE	canonical	3	2552	junction_2	153.800375667797	10658	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGTGCAATCCTAGAGA	5515	False	NA	-19	True	ATTAAA	-19	NA	79875629	79871782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_79872136_79872360_79872433_79872597_79872677_79872748_79872808_79873021_79873219_79874272_79874448_79875416
transcript_81564.known	chr7	-	2282	14	FSM	ENSMUSG00000003363.16	ENSMUST00000117095.8	2282	14	0	0	0	0	multi-exon	FALSE	canonical	3	277	junction_13	66.1410542194063	832	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTATGAGATGGTATGTT	NA	False	NA	1	True	AGTAAA	-31	NA	27252637	27231424	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_27231911_27231999_27232100_27233070_27233237_27235213_27235354_27237004_27237206_27238774_27238903_27238979_27239095_27240509_27240694_27241110_27241254_27241338_27241414_27241513_27241607_27242168_27242330_27244612_27244688_27252422
transcript_8157.known	chr10	-	2403	4	FSM	ENSMUSG00000004667.19	ENSMUST00000143438.8	2403	4	0	0	0	0	multi-exon	FALSE	canonical	3	2552	junction_2	187.276978474843	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGTGCAATCCTAGAGA	5600	False	NA	-19	True	ATTAAA	-19	NA	79875544	79871782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_79872136_79872360_79872433_79872597_79874448_79875416
transcript_81579.known	chr7	+	1989	11	FSM	ENSMUSG00000049643.16	ENSMUST00000187960.7	1989	11	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_10	97.3365296278843	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGTCTGTGTATGT	449	False	NA	NA	False	AATAAA	-20	NA	27252710	27281524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_27252779_27255838_27255960_27259976_27260029_27263910_27263999_27264084_27264200_27265071_27265154_27270988_27271127_27274015_27274166_27278137_27278209_27279761_27280117_27280775
transcript_8158.known	chr10	-	1238	5	FSM	ENSMUSG00000004667.19	ENSMUST00000131743.8	1238	5	0	0	0	0	multi-exon	FALSE	canonical	3	2815	junction_1	73.6562964043129	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTGGTGCAATCCTAGA	5660	False	NA	-21	True	ATTAAA	-17	NA	79875484	79871784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_79872136_79872360_79872808_79873021_79873219_79874272_79874448_79875416
transcript_81581.known	chr7	+	2701	10	FSM	ENSMUSG00000049643.16	ENSMUST00000067386.14	2701	10	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_8	25.2899238218224	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGTCTGTGTATGT	396	False	NA	NA	False	AATAAA	-20	NA	27252657	27281524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_27252779_27255838_27255960_27259976_27260029_27263910_27263999_27264084_27264200_27265071_27265154_27270988_27271127_27274015_27274166_27278137_27278209_27279761
transcript_81588.known	chr7	+	340	4	FSM	ENSMUSG00000049643.16	ENSMUST00000186501.2	340	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	145.525102836437	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCTGTCCTGCAGTATGC	7134	False	NA	NA	False	NA	NA	NA	27273891	27279845	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_27273927_27274015_27274166_27278137_27278209_27279761
transcript_81590.known	chr7	+	426	2	FSM	ENSMUSG00000049643.16	ENSMUST00000190903.2	426	2	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGTGTGTTTGTT	433	False	NA	NA	False	AGTAAA	-21	NA	27252694	27253496	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_27252779_27253154
transcript_81599.known	chr7	+	4544	14	FSM	ENSMUSG00000004056.16	ENSMUST00000108344.9	4544	14	0	0	0	0	multi-exon	FALSE	canonical	3	377	junction_6	55.340153093199	226	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCTTGTACTTTGGTG	NA	False	NA	6	True	AATAAA	-17	NA	27290976	27340251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_27291305_27308047_27308179_27315665_27315795_27317632_27317745_27328261_27328416_27328720_27328853_27331842_27331909_27332623_27332693_27333986_27334110_27335463_27335593_27335688_27335904_27336347_27336436_27336516_27336620_27337486
transcript_81609.nnic	chr7	+	617	3	NNC	ENSMUSG00000007944.9	novel	2052	3	NA	NA	-6398	-1138	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	1.5	43	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCCTTTGTGTGGTCTTA	NA	False	NA	11	True	NA	NA	NA	27346941	27355633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_27347078_27354336_27354520_27355335
transcript_81610.known	chr7	+	2052	3	FSM	ENSMUSG00000007944.9	ENSMUST00000008088.9	2052	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	3	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGAGCTGTACCCCAGTT	NA	False	NA	NA	False	NA	NA	NA	27353339	27356771	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_27353773_27354336_27354520_27355335
transcript_81611.known	chr7	-	1621	2	FSM	ENSMUSG00000040390.14	ENSMUST00000138243.2	1621	2	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	0	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCACTGCGTAGTCATTGA	NA	False	NA	0	True	ACTAAA	-17	NA	27374006	27367572	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_27367955_27372767
transcript_81612.known	chr7	-	2926	2	FSM	ENSMUSG00000108520.2	ENSMUST00000205388.2	2926	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGACTACAACTCCCAGGCG	NA	False	NA	NA	False	NA	NA	NA	27377269	27374083	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_27375856_27376115
transcript_81617.known	chr7	+	4612	6	FSM	ENSMUSG00000057093.15	ENSMUST00000120004.8	4612	6	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	18.2362276800878	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTCTGAGTGATCTTCT	NA	False	NA	7	True	NA	NA	NA	27388764	27405909	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_27388912_27390639_27390721_27391906_27391960_27392906_27393034_27398077_27398177_27401804
transcript_81618.nnic	chr7	+	511	6	NNC	ENSMUSG00000057093.15	novel	1947	4	NA	NA	178	-1578	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	21.0180874486714	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCTACTTTTAGTGATGG	NA	False	NA	12	True	AGTAAA	-16	NA	27388942	27401914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_27388984_27390639_27390721_27391906_27391960_27392906_27393034_27398077_27398177_27401804
transcript_81621.nnic	chr7	+	623	6	NNC	ENSMUSG00000057093.15	novel	1947	4	NA	NA	221	-1578	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	20.5290038725701	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCTACTTTTAGTGATGG	NA	False	NA	12	True	AGTAAA	-16	NA	27388985	27401914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_27389139_27390639_27390721_27391906_27391960_27392906_27393034_27398077_27398177_27401804
transcript_81627.nnic	chr7	+	492	5	NNC	ENSMUSG00000057093.15	novel	1947	4	NA	NA	224	-1578	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	22.5554871372799	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCTACTTTTAGTGATGG	NA	False	NA	12	True	AGTAAA	-16	NA	27391561	27401914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_27391665_27391906_27391960_27392906_27393034_27398077_27398177_27401804
transcript_81636.known	chr7	+	5896	5	FSM	ENSMUSG00000037640.16	ENSMUST00000108336.8	5896	5	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	38.9422649572415	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTGCTGAGTATTTTGT	NA	False	NA	NA	False	AATAAA	-13	NA	27430813	27453127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_27430896_27436360_27436414_27437727_27437855_27440381_27440481_27447592
transcript_81638.known	chr7	+	2727	5	FSM	ENSMUSG00000037640.16	ENSMUST00000042641.14	2727	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	62.997519792449	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAGCATGAGAAAAGGAAGA	NA	False	NA	NA	False	NA	NA	NA	27430935	27449886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_27431090_27436360_27436414_27437727_27437855_27440381_27440481_27447592
transcript_81644.known	chr7	+	632	3	FSM	ENSMUSG00000109143.2	ENSMUST00000208208.2	632	3	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	10	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAAATTATATTCACACAA	2435	False	NA	NA	False	NA	NA	NA	27465097	27470397	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_27465209_27468664_27468718_27469929
transcript_81645.nnic	chr7	+	383	3	NNC	ENSMUSG00000109143.2	novel	632	3	NA	NA	-1618	94	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	15	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAAGTTGGGTTTGGTGTC	2588	False	NA	NA	False	ATTAAA	-27	NA	27468311	27470149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_27468422_27468664_27468718_27469929
transcript_81646.nnic	chr7	+	489	5	NNC	ENSMUSG00000030604.10	novel	5329	4	NA	NA	-2386	-707	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	14.543039572249	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGCTCCAGGTTTAGTGAT	4911	False	NA	NA	False	AGTAAA	-14	NA	27504234	27517387	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_27504337_27506608_27506662_27507625_27507753_27510175_27510275_27517279
transcript_81648.known	chr7	+	5329	4	FSM	ENSMUSG00000030604.10	ENSMUST00000205671.2	5329	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	14.7648230602334	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTGTTTAAGTGGTCTT	7297	False	NA	9	True	NA	NA	NA	27506620	27522341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_27506662_27507625_27507753_27510175_27510275_27517279
transcript_81651.known	chr7	+	3511	5	FSM	ENSMUSG00000020420.9	ENSMUST00000205534.2	3511	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	11.4127122105133	582	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAGTAAGAAAAATAT	3327	False	NA	NA	False	NA	NA	NA	27560009	27580250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_27560182_27561961_27562015_27562813_27562941_27564994_27565094_27577190
transcript_81662.known	chr7	-	881	4	FSM	ENSMUSG00000070709.13	ENSMUST00000138583.8	881	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	23.6971634495683	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAGTTCTCTCTTATGAA	NA	False	NA	NA	False	NA	NA	NA	27628855	27623457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_27624023_27625708_27625836_27626825_27626879_27628719
transcript_81671.known	chr7	-	3940	6	FSM	ENSMUSG00000063047.10	ENSMUST00000206685.2	3940	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	22.29798197147	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGAGTAAAAACTATAA	NA	False	NA	NA	False	TTTAAA	-28	NA	27678572	27660785	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_27664295_27671047_27671147_27673143_27673271_27674177_27674231_27676164_27676259_27678514
transcript_81673.nic	chr7	-	557	6	NIC	ENSMUSG00000063047.10	novel	3940	6	NA	NA	-39	-2087	combination_of_known_junctions	FALSE	canonical	3	31	junction_4	18.9166593245213	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCATAAAGCAATTAATAACT	NA	False	NA	NA	False	AATAAA	-17	NA	27678635	27664219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_27664295_27671047_27671147_27673143_27673271_27674177_27674231_27676176_27676259_27678514
transcript_81677.nnic	chr7	-	458	5	NIC	ENSMUSG00000063047.10	novel	3940	6	NA	NA	-22	-2087	combination_of_known_splicesites	FALSE	canonical	2	7	junction_4	28.5864915650732	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCATAAAGCAATTAATAACT	NA	False	NA	NA	False	AATAAA	-17	NA	27678618	27664219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_27664295_27671047_27671147_27673143_27673271_27674177_27674231_27678514
transcript_81678.known	chr7	-	1907	6	FSM	ENSMUSG00000063047.10	ENSMUST00000205874.2	1907	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	28.3083026690051	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTTCATCATGTGACC	NA	False	NA	NA	False	NA	NA	NA	27678564	27658559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_27660056_27671047_27671147_27673143_27673271_27674177_27674231_27676176_27676259_27678514
transcript_81682.known	chr7	-	6163	6	FSM	ENSMUSG00000096916.8	ENSMUST00000180502.8	6163	6	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_5	35.6482818660311	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAATTGCAAACTCTTAATG	NA	False	NA	NA	False	AATAAA	-43	NA	27713540	27684278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_27689948_27704643_27704743_27706738_27706866_27707808_27707862_27711760_27711876_27713440
transcript_81696.known	chr7	-	1244	11	FSM	ENSMUSG00000030603.17	ENSMUST00000140053.3	1244	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	702.157133411034	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCCAGGATTGGTTTAGT	NA	False	NA	-54	True	NA	NA	NA	27749473	27741181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_27741346_27741525_27741582_27741763_27741933_27742074_27742152_27742233_27742402_27746410_27746505_27746597_27746708_27746790_27746938_27748217_27748312_27748528_27748628_27749407
transcript_81699.known	chr7	-	1440	11	FSM	ENSMUSG00000030603.17	ENSMUST00000032824.10	1440	11	0	0	0	0	multi-exon	FALSE	canonical	3	2113	junction_5	109.082033351052	19041	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTCTTAGGTGTTTAAC	NA	False	NA	-4	True	AATAAA	-24	NA	27749526	27741131	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_27741346_27741525_27741582_27741763_27741933_27742074_27742152_27742233_27742402_27746410_27746505_27746597_27746708_27746790_27746938_27748217_27748405_27748528_27748628_27749407
transcript_8171.known	chr10	+	959	7	FSM	ENSMUSG00000075706.12	ENSMUST00000105372.9	959	7	0	0	0	0	multi-exon	FALSE	canonical	3	7423	junction_5	743.006878987148	18921	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGTCTTTGGGTC	655	False	NA	4	True	AATAAA	-14	NA	79889321	79892273	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79889550_79890347_79890443_79890533_79890679_79890801_79890954_79891756_79891782_79891873_79891934_79892019
transcript_8172.known	chr10	+	735	6	FSM	ENSMUSG00000075706.12	ENSMUST00000183037.3	735	6	0	0	0	0	multi-exon	FALSE	canonical	3	7423	junction_4	813.086120899871	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTTCACCCTGGCTGCCT	1632	False	NA	-41	True	NA	NA	NA	79890298	79892228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79890443_79890533_79890679_79890801_79890954_79891756_79891782_79891873_79891934_79892019
transcript_81721.nic	chr7	+	1050	3	ISM	ENSMUSG00000078776.10	ENSMUST00000150948.2	7895	19	32548	-16	32548	0	3prime_fragment	FALSE	canonical	3	5	junction_2	2.5	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTCTCCTGCTGTCT	1185	False	NA	NA	False	AATAAA	-15	NA	27861788	27864236	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_27862400_27863693_27863966_27864069
transcript_81723.known	chr7	+	1197	9	FSM	ENSMUSG00000046865.8	ENSMUST00000042405.8	1197	9	0	0	0	0	multi-exon	FALSE	canonical	3	2081	junction_3	279.620725269069	12956	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGTCTGGTGCCTATT	8531	False	NA	0	True	ATTAAA	-14	NA	27869134	27878694	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_27869244_27873928_27874112_27874209_27874318_27874408_27874504_27875279_27875451_27876567_27876701_27877629_27877743_27878322_27878469_27878555
transcript_81724.known	chr7	+	1751	1	FSM	ENSMUSG00000070705.4	ENSMUST00000094651.4	1751	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATCTGGGTTGTTTGAAA	NA	False	NA	NA	False	AATGAA	-15	NA	27977163	27978914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_27977200_27978900
transcript_81725.nnic	chr7	-	843	6	NNC	ENSMUSG00000046750.19	novel	1267	6	NA	NA	312	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTGTGTCAGCGTCTGAC	NA	False	NA	NA	False	AGTAAA	-18	NA	27990299	27984076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_27984189_27987330_27987468_27987546_27987622_27987725_27987780_27987895_27987921_27989859
transcript_81726.known	chr7	-	2618	9	FSM	ENSMUSG00000003436.12	ENSMUST00000108315.4	2618	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	6.12372435695795	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTGAACTTTGTTTTTGA	NA	False	NA	NA	False	NA	NA	NA	28001663	27992977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_27993352_27993465_27993551_27993768_27994349_27995712_27995936_27997943_27998162_27998317_27998561_27999591_27999650_28000708_28000991_28001108
transcript_8173.known	chr10	-	4227	32	FSM	ENSMUSG00000035673.11	ENSMUST00000042771.8	4227	32	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_31	40.678557708356	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTACTTCAGCCTCTGG	NA	False	NA	NA	False	NA	NA	NA	79938532	79893249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_79893699_79893789_79893981_79894086_79894164_79894249_79894382_79894470_79894567_79894638_79894734_79895769_79895914_79895998_79896074_79896227_79896337_79896423_79896496_79896622_79896736_79896817_79896954_79897149_79897282_79897995_79898166_79898401_79898594_79899482_79899563_79899978_79900077_79900153_79900331_79902383_79902538_79902664_79902771_79903110_79903229_79904161_79904306_79904518_79904610_79904692_79904827_79905115_79905271_79905444_79905542_79905801_79905886_79908190_79908353_79918448_79918561_79920074_79920149_79922090_79922267_79938450
transcript_81735.known	chr7	-	1515	11	FSM	ENSMUSG00000003438.18	ENSMUST00000081946.5	1515	11	0	0	0	0	multi-exon	FALSE	canonical	3	2125	junction_9	150.487341660354	2943	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCCGTGTGTGGCTCTGT	2656	False	NA	-1	True	NA	NA	NA	28011497	28004940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_28005456_28005847_28005955_28006246_28006404_28006977_28007077_28007169_28007275_28007572_28007693_28007778_28007838_28009503_28009526_28009720_28009753_28010293_28010445_28011349
transcript_81736.known	chr7	-	3513	30	FSM	ENSMUSG00000003435.10	ENSMUST00000003527.10	3513	30	0	0	0	0	multi-exon	FALSE	canonical	3	628	junction_29	71.450522531579	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTGTACGAAGAGTTTT	NA	False	NA	-11	True	AATAAA	-18	NA	28038144	28014318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029078_28029442_28029455_28030004_28030071_28030794_28030955_28037776_28037861_28038119
transcript_8175.nic	chr10	-	2423	18	ISM	ENSMUSG00000035673.11	ENSMUST00000219260.2	4850	33	1644	5424	-28	0	internal_fragment	FALSE	canonical	3	133	junction_10	12.4322384803871	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATGGGTCTCCATTCCTC	NA	False	NA	0	True	AATAAA	-21	NA	79938560	79898249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_79898594_79899482_79899563_79899978_79900077_79900153_79900331_79902383_79902538_79902664_79902771_79903110_79903229_79904161_79904306_79904518_79904610_79904692_79904827_79905115_79905271_79905444_79905542_79905801_79905886_79908190_79908353_79918448_79918561_79920074_79920149_79922090_79922267_79938443
transcript_8176.known	chr10	-	2156	15	FSM	ENSMUSG00000035673.11	ENSMUST00000217876.2	2156	15	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_14	37.9085903785645	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATGGGTCTCCATTCCTC	5655	False	NA	0	True	AATAAA	-21	NA	79911273	79898249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_79898594_79899482_79899563_79899978_79900077_79900153_79900331_79902383_79902538_79902664_79902771_79903110_79903229_79904161_79904306_79904518_79904610_79904692_79904827_79905115_79905271_79905444_79905542_79905801_79905886_79908190_79908353_79911061
transcript_81770.nic	chr7	-	239	3	ISM	ENSMUSG00000003435.10	ENSMUST00000003527.10	3513	30	-71	16577	-44	-5428	5prime_fragment	FALSE	canonical	3	628	junction_2	50	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGGAGGAAGAGGAAGAAT	NA	False	NA	NA	False	NA	NA	NA	28038215	28030895	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_28030955_28037776_28037861_28038119
transcript_81772.nic	chr7	-	348	3	ISM	ENSMUSG00000003435.10	ENSMUST00000207563.2	3640	31	-44	22965	-44	-11813	5prime_fragment	FALSE	canonical	2	27	junction_1	300.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAGGTTCAGCATCCTAG	NA	False	NA	NA	False	AATAAA	-24	NA	28038215	28037280	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_28037449_28037776_28037861_28038119
transcript_81773.known	chr7	-	3640	31	FSM	ENSMUSG00000003435.10	ENSMUST00000207563.2	3640	31	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_28	195.98717645125	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTACGAAGAGTTTTCTT	NA	False	NA	-8	True	AATAAA	-21	NA	28038171	28014315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029078_28029442_28029455_28030004_28030071_28030794_28030955_28037351_28037449_28037776_28037861_28038119
transcript_81774.known	chr7	-	3755	29	FSM	ENSMUSG00000003435.10	ENSMUST00000209141.2	3755	29	0	0	0	0	multi-exon	FALSE	canonical	3	668	junction_13	69.0304945924152	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTGTGTGTACGAAGAG	NA	False	NA	-15	True	AATAAA	-14	NA	28038131	28014322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029078_28029442_28029455_28030004_28030071_28030794_28030955_28037776
transcript_8179.nnic	chr10	-	1178	5	NNC	ENSMUSG00000035673.11	novel	3772	6	NA	NA	-28	1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	67.1453646948172	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTCTGCCATTCAGTCT	NA	False	NA	NA	False	AATAGA	-11	NA	79938560	79916242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_79916942_79918448_79918561_79920074_79920149_79922090_79922267_79938443
transcript_81793.known	chr7	+	1109	5	FSM	ENSMUSG00000037563.16	ENSMUST00000082134.6	1109	5	0	0	0	0	multi-exon	FALSE	canonical	3	19383	junction_3	806.134294023024	124051	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTCTGGCCTTTATGGT	NA	False	NA	NA	False	NA	NA	NA	28050076	28052580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28050277_28050416_28050519_28051601_28051699_28051787_28051836_28051918
transcript_81794.known	chr7	+	518	4	FSM	ENSMUSG00000037563.16	ENSMUST00000155805.2	518	4	0	0	0	0	multi-exon	FALSE	canonical	3	19383	junction_2	895.518844022838	6679	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	0	True	AATAAA	-21	NA	28050348	28052121	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28050519_28051601_28051699_28051787_28051836_28051918
transcript_81795.known	chr7	+	628	4	FSM	ENSMUSG00000037563.16	ENSMUST00000152918.8	628	4	0	0	0	0	multi-exon	FALSE	canonical	3	20184	junction_3	558.517283130572	2839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	0	True	AATAAA	-21	NA	28050187	28052121	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28050277_28050416_28050519_28051601_28051836_28051918
transcript_81796.known	chr7	-	2790	2	FSM	ENSMUSG00000044786.7	ENSMUST00000051241.7	2790	2	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGAAATTTGTCTTTTTC	5673	False	NA	-2	True	AATAAA	-18	NA	28079678	28076208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_28077919_28078598
transcript_81798.known	chr7	-	1281	4	FSM	ENSMUSG00000003444.9	ENSMUST00000003536.9	1281	4	0	0	0	0	multi-exon	FALSE	canonical	3	529	junction_2	10.3387082795139	1795	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTTAGCTCCAAAGCAG	NA	False	NA	NA	False	NA	NA	NA	28092133	28085570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_28086450_28090236_28090322_28090514_28090574_28091875
transcript_81799.known	chr7	+	2003	14	FSM	ENSMUSG00000003437.15	ENSMUST00000003529.9	2003	14	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_5	16.9726546514433	1047	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTAAAGTCTCTGTTCC	569	False	NA	20	True	AATAAA	-21	NA	28092375	28098813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28092680_28093093_28093124_28094467_28094561_28094842_28094965_28095053_28095121_28095195_28095298_28095376_28095483_28095558_28095628_28095708_28095813_28096034_28096152_28096245_28096375_28097872_28097979_28098083_28098175_28098250
transcript_81800.known	chr7	+	467	2	FSM	ENSMUSG00000003437.15	ENSMUST00000145339.2	467	2	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2482	False	NA	NA	False	NA	NA	NA	28096075	28096636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28096152_28096245
transcript_81804.known	chr7	+	637	7	FSM	ENSMUSG00000060791.16	ENSMUST00000078845.13	637	7	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	149.1011029097	782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATAACGACATGGTATCT	146	False	NA	NA	False	AATAAA	-19	NA	28140351	28145964	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28140467_28140858_28140956_28141093_28141144_28142644_28142695_28144277_28144361_28145341_28145416_28145796
transcript_81812.known	chr7	+	657	7	FSM	ENSMUSG00000060791.16	ENSMUST00000108292.9	657	7	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_1	45.6070170039655	3134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGACATGGTATCTGCAAAAT	1815	False	NA	NA	False	AATAAA	-26	NA	28136871	28145971	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28137000_28140858_28140956_28141093_28141144_28142644_28142695_28144277_28144361_28145341_28145416_28145796
transcript_81813.known	chr7	+	477	6	FSM	ENSMUSG00000060791.16	ENSMUST00000108289.8	477	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	171.128723480309	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCCAAGAGCGAAATAAAGG	1855	False	NA	NA	False	NA	NA	NA	28136911	28145928	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28137000_28141093_28141144_28142644_28142695_28144277_28144361_28145341_28145416_28145796
transcript_81814.nnic	chr7	-	806	4	NNC	ENSMUSG00000109201.2	novel	342	3	NA	NA	-1156	180	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.471404520791032	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTGTGGTCTTGAGTG	NA	False	NA	NA	False	AATAAA	-23	NA	28178433	28176571	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_28176848_28176930_28177018_28177118_28177263_28178134
transcript_81815.nnic	chr7	-	662	3	NNC	ENSMUSG00000109201.2	novel	342	3	NA	NA	-1156	180	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTGTGGTCTTGAGTG	NA	False	NA	NA	False	AATAAA	-23	NA	28178433	28176571	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_28176848_28176930_28177018_28178134
transcript_81817.known	chr7	+	971	2	FSM	ENSMUSG00000099417.2	ENSMUST00000190841.2	971	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGAAAAAAAAAAAAAAAGGC	4392	False	NA	NA	False	AATAAA	-8	NA	28191974	28197138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28192135_28196327
transcript_81819.known	chr7	+	556	2	FSM	ENSMUSG00000084174.4	ENSMUST00000119180.4	556	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTGTGACATCTGTGTG	NA	False	NA	NA	False	AATACA	-19	NA	28240309	28241634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28240730_28241498
transcript_8182.known	chr10	-	1409	2	FSM	ENSMUSG00000035673.11	ENSMUST00000218310.2	1409	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGAAAGAAAAAAAAAAAAA	5694	False	NA	NA	False	NA	NA	NA	79911234	79907116	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_79908353_79911061
transcript_81821.known	chr7	-	1531	6	FSM	ENSMUSG00000047586.5	ENSMUST00000239002.2	1531	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	2.92574776766556	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGCTCAGAGGCTGGTT	NA	False	NA	NA	False	AATAAA	-25	NA	28246679	28243020	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_28243698_28243846_28243986_28244663_28244760_28245580_28245633_28245714_28245778_28246175
transcript_81825.known	chr7	-	2899	10	FSM	ENSMUSG00000030602.14	ENSMUST00000108283.8	2899	10	0	0	0	0	multi-exon	TRUE	canonical	3	622	junction_9	35.4843036069349	262	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTATGTGTGTGGT	4596	False	NA	-3	True	ATTAAA	-21	NA	28297610	28258243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_28259231_28259569_28259705_28260223_28260350_28261962_28262090_28262372_28262507_28263630_28264072_28264237_28264697_28267458_28267724_28269217_28269292_28297459
transcript_81829.nic	chr7	+	1264	6	NIC	ENSMUSG00000037463.15	novel	1946	6	NA	NA	-82	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_5	19.975985582694	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGTTTTTTTTGTTTGTTT	8763	False	NA	NA	False	GATAAA	-17	NA	28392191	28397386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_28392398_28392694_28393076_28394155_28394268_28394430_28394527_28396064_28396201_28397053
transcript_8183.known	chr10	+	2566	10	FSM	ENSMUSG00000003068.18	ENSMUST00000003152.14	2566	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	19.2898617266195	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACCTGGGCTGTTCTGTC	2647	False	NA	20	True	AATAAA	-24	NA	79951636	79966516	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79952742_79960635_79960720_79961312_79961403_79961866_79962000_79962066_79962204_79962487_79962616_79962878_79962937_79963737_79963935_79965738_79965946_79966089
transcript_81830.known	chr7	+	1946	6	FSM	ENSMUSG00000037463.15	ENSMUST00000039998.11	1946	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	20.7460839678239	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTCATATCTTTTTCTT	8845	False	NA	NA	False	AATAAA	-19	NA	28392273	28398763	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28392398_28392694_28393076_28394158_28394268_28394430_28394527_28396064_28396201_28397663
transcript_81835.nnic	chr7	+	1989	6	NNC	ENSMUSG00000037463.15	novel	1946	6	NA	NA	-81	0	at_least_one_novel_splicesite	TRUE	canonical	1	7	junction_1	20.3803827245712	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTCATATCTTTTTCTT	8764	False	NA	NA	False	AATAAA	-19	NA	28392192	28398763	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_28392357_28392694_28393076_28394155_28394268_28394430_28394527_28396064_28396201_28397663
transcript_81840.known	chr7	+	1948	5	FSM	ENSMUSG00000037463.15	ENSMUST00000108281.8	1948	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	9.31396800509858	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGGTTCATATCTTTTT	9140	False	NA	NA	False	AATAAA	-16	NA	28392568	28398760	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28393076_28394155_28394268_28394430_28394527_28396064_28396201_28397663
transcript_81841.known	chr7	+	458	2	FSM	ENSMUSG00000037463.15	ENSMUST00000127368.2	458	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGTTTTTTTTGTTTGTTT	3036	False	NA	NA	False	GATAAA	-17	NA	28396075	28397386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28396201_28397053
transcript_81843.known	chr7	+	1806	8	FSM	ENSMUSG00000030598.16	ENSMUST00000108278.9	1806	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_7	33.4310133418242	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTTTTTTTCAATT	NA	False	NA	NA	False	NA	NA	NA	28416256	28437563	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28416464_28424039_28424153_28431837_28432298_28432853_28432966_28434701_28434798_28435492_28435629_28436763_28436972_28437089
transcript_81846.nnic	chr7	+	1830	8	NNC	ENSMUSG00000030598.16	novel	1806	8	NA	NA	-61	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	45.8933991074169	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTTTTTTTCAATT	NA	False	NA	NA	False	NA	NA	NA	28416167	28437563	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_28416464_28424039_28424153_28431902_28432298_28432853_28432966_28434701_28434798_28435492_28435629_28436763_28436972_28437089
transcript_81847.known	chr7	+	1958	7	FSM	ENSMUSG00000030598.16	ENSMUST00000032818.13	1958	7	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_6	22.6838170411321	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCAATTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	28416228	28437569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28416464_28424039_28424153_28431837_28432298_28432853_28432966_28434701_28434798_28435492_28435629_28436763
transcript_81848.known	chr7	+	1563	7	FSM	ENSMUSG00000030598.16	ENSMUST00000108279.9	1563	7	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_6	37.5340586075574	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCAATTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	28416297	28437569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28416464_28424039_28424153_28431837_28432298_28432853_28432966_28434701_28434798_28435492_28435629_28437089
transcript_81854.nnic	chr7	+	1305	6	NNC	ENSMUSG00000030598.16	novel	1958	7	NA	NA	522	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	54.9508871629931	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTTTTTTTCAATT	NA	False	NA	NA	False	NA	NA	NA	28432446	28437563	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_28432726_28432853_28432966_28434701_28434798_28435492_28435629_28436763_28436972_28437089
transcript_81866.known	chr7	-	722	3	FSM	ENSMUSG00000045948.9	ENSMUST00000056078.9	722	3	0	0	0	0	multi-exon	FALSE	canonical	3	503	junction_2	218	6933	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCAGTGTGCGGTGTCTGT	1644	False	NA	-6	True	AATAAA	-23	NA	28441245	28439066	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_28439665_28440911_28440980_28441189
transcript_8187.known	chr10	+	3663	11	FSM	ENSMUSG00000003068.18	ENSMUST00000144883.8	3663	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_9	30.2019866896203	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTATGGCTATGAGGGTGT	2647	False	NA	19	True	AATAAA	-14	NA	79951636	79966303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79952742_79960635_79960720_79961312_79961403_79961866_79962000_79962066_79962204_79962487_79962616_79962878_79962937_79963737_79963935_79964224_79965535_79965738_79965946_79966089
transcript_81873.known	chr7	-	883	2	FSM	ENSMUSG00000045948.9	ENSMUST00000171183.2	883	2	0	0	0	0	multi-exon	FALSE	canonical	3	939	junction_1	0	4711	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGTGCGGTGTCTGTC	1694	False	NA	-5	True	AATAAA	-24	NA	28441195	28439065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_28439665_28440911
transcript_81874.known	chr7	-	380	2	FSM	ENSMUSG00000045948.9	ENSMUST00000165246.2	380	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGTGCGGTGTCTGTC	3397	False	NA	-5	True	AATAAA	-24	NA	28439492	28439065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_28439405_28439451
transcript_81876.known	chr7	+	1868	16	FSM	ENSMUSG00000070699.6	ENSMUST00000094632.6	1868	16	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_5	21.0516824347446	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACAGGAAGTGCTGGCTG	278	False	NA	25	True	AATAAA	-33	NA	28441426	28453296	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28441708_28443666_28443763_28445876_28445907_28446165_28446307_28446383_28446439_28446911_28446976_28447256_28447363_28448379_28448428_28449001_28449111_28449305_28449352_28449435_28449524_28449606_28449717_28451666_28451761_28451850_28451944_28452027_28452094_28452855
transcript_81880.nic	chr7	+	2197	15	NIC	ENSMUSG00000070699.6	novel	1868	16	NA	NA	-38	0	intron_retention	TRUE	canonical	3	180	junction_5	20.6265382852444	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACAGGAAGTGCTGGCTG	230	False	NA	25	True	AATAAA	-33	NA	28441378	28453296	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_28441708_28443666_28443763_28445876_28445907_28446165_28446307_28446383_28446439_28446911_28447363_28448379_28448428_28449001_28449111_28449305_28449352_28449435_28449524_28449606_28449717_28451666_28451761_28451850_28451944_28452027_28452094_28452855
transcript_81885.known	chr7	+	1790	2	FSM	ENSMUSG00000070699.6	ENSMUST00000207897.2	1790	2	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAACAAG	284	False	NA	NA	False	NA	NA	NA	28441432	28445181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28441708_28443666
transcript_81887.known	chr7	+	1843	16	FSM	ENSMUSG00000015149.15	ENSMUST00000072965.5	1843	16	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	28.236776649532	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGACTTGTGTGGCCTCT	NA	False	NA	12	True	ATTAAA	-21	NA	28466191	28488085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28466293_28467056_28467104_28471235_28471285_28471519_28471634_28476282_28476325_28476420_28476528_28476615_28476673_28478346_28478416_28482193_28482324_28484804_28484865_28485088_28485145_28485230_28485308_28485389_28485442_28487007_28487079_28487186_28487254_28487341
transcript_81889.known	chr7	+	1828	15	FSM	ENSMUSG00000015149.15	ENSMUST00000122915.8	1828	15	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	14.0365775815931	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGACTTGTGTGGCCTCT	NA	False	NA	12	True	ATTAAA	-21	NA	28466159	28488085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28466293_28471235_28471285_28471519_28471634_28476282_28476325_28476420_28476528_28476615_28476673_28478346_28478416_28482193_28482324_28484804_28484865_28485088_28485145_28485230_28485308_28485389_28485442_28487007_28487079_28487186_28487254_28487341
transcript_81891.known	chr7	+	1585	13	FSM	ENSMUSG00000015149.15	ENSMUST00000170068.9	1585	13	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	28.6162347084463	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGACTTGTGTGGCCTCTG	NA	False	NA	13	True	ATTAAA	-22	NA	28466240	28488086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28466293_28476282_28476325_28476420_28476528_28476615_28476673_28478346_28478416_28482193_28482324_28484804_28484865_28485088_28485145_28485230_28485308_28485389_28485442_28487007_28487079_28487186_28487254_28487341
transcript_81895.known	chr7	-	1243	6	FSM	ENSMUSG00000030595.16	ENSMUST00000085851.12	1243	6	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_1	23.6761483354029	3390	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCCTTCCTGCTTATTT	NA	False	NA	1	True	AATAAA	-33	NA	28465939	28458456	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_28458630_28459251_28459522_28459601_28459691_28461026_28461361_28461450_28461557_28465668
transcript_81897.nic	chr7	+	2116	5	ISM	ENSMUSG00000051735.8	ENSMUST00000059857.8	2871	12	7006	0	-963	0	3prime_fragment	FALSE	canonical	3	40	junction_1	3.11247489949718	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGAGGTGCAGACCTGTA	NA	False	NA	12	True	AATAAA	-22	NA	28495399	28498388	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_28495772_28496077_28496372_28496534_28496667_28496984_28497149_28497234
transcript_81900.known	chr7	+	1898	13	FSM	ENSMUSG00000015165.17	ENSMUST00000172529.8	1898	13	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	1654.75498983653	6504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGCTGGGGCTCCAAG	NA	False	NA	16	True	AATAAA	-19	NA	28508232	28521674	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28508285_28512703_28512823_28513278_28513517_28513626_28513713_28514523_28514621_28514704_28514778_28517885_28517958_28518068_28518350_28519577_28519700_28519969_28520172_28520640_28520699_28520816_28520913_28521272
transcript_81901.known	chr7	+	2142	13	FSM	ENSMUSG00000015165.17	ENSMUST00000038572.15	2142	13	0	0	0	0	multi-exon	FALSE	canonical	3	4757	junction_8	508.744178235868	7679	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGGTGGGTTGTCTGCTTT	NA	False	NA	33	True	AATAAA	-36	NA	28510314	28521691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28510594_28512703_28512823_28513278_28513517_28513626_28513713_28514523_28514621_28514704_28514778_28517885_28517958_28518068_28518350_28519577_28519700_28519969_28520172_28520640_28520699_28520816_28520913_28521272
transcript_81904.known	chr7	+	2180	12	FSM	ENSMUSG00000015165.17	ENSMUST00000174477.8	2180	12	0	0	0	0	multi-exon	FALSE	canonical	3	4757	junction_7	501.59715158615	6141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAAACTATTTGCTGG	NA	False	NA	7	True	AATAAA	-10	NA	28510361	28521665	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28510594_28512703_28512823_28513278_28513517_28513626_28513713_28514523_28514621_28514704_28514778_28517885_28518350_28519577_28519700_28519969_28520172_28520640_28520699_28520816_28520913_28521272
transcript_81908.known	chr7	-	592	2	FSM	ENSMUSG00000109420.2	ENSMUST00000209194.2	592	2	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAGGCTGGTGAGGATAT	NA	False	NA	NA	False	NA	NA	NA	28509922	28508728	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_28509258_28509859
transcript_8191.known	chr10	+	1410	5	FSM	ENSMUSG00000003072.16	ENSMUST00000105367.8	1410	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	1062.04060656832	2478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTGTTCTGTTTCTAAC	3587	False	NA	15	True	ATTAAA	-14	NA	79977290	79981647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79977501_79977874_79978441_79979665_79979820_79981052_79981142_79981256
transcript_81913.known	chr7	+	1267	10	FSM	ENSMUSG00000053898.13	ENSMUST00000066264.13	1267	10	0	0	0	0	multi-exon	TRUE	canonical	3	645	junction_5	36.3137901908447	2873	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGTGTCTTTACTGCAG	NA	False	NA	14	True	AATAAA	-12	NA	28524641	28531672	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28524838_28525298_28525504_28525609_28525699_28529224_28529350_28529426_28529476_28529638_28529704_28530641_28530713_28530813_28530886_28531141_28531293_28531428
transcript_81924.nnic	chr7	+	558	4	NNC	ENSMUSG00000053964.18	novel	1298	8	NA	NA	2505	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCTTGTGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-11	NA	28537865	28541126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_28538089_28539928_28539960_28540288_28540378_28540911
transcript_81925.nnic	chr7	+	708	4	NNC	ENSMUSG00000053964.18	novel	519	2	NA	NA	2505	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4.49691252107735	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCTTGTGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-11	NA	28537865	28541126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_28538107_28540288_28540378_28540569_28540733_28540911
transcript_81927.nnic	chr7	+	545	3	NNC	ENSMUSG00000053964.18	novel	1298	8	NA	NA	2505	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCTTGTGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-11	NA	28537865	28541126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_28538107_28540288_28540378_28540911
transcript_81930.nic	chr7	-	3883	21	NIC	ENSMUSG00000054808.16	novel	3877	21	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	395	junction_14	307.041247229098	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGTGTCATCTTCTCCC	NA	False	NA	-1	True	AATAAA	-24	NA	28661771	28592672	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_28593813_28593925_28594085_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604649_28604881_28606396_28606490_28609327_28609414_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28661443
transcript_81932.known	chr7	-	3877	21	FSM	ENSMUSG00000054808.16	ENSMUST00000068045.14	3877	21	0	0	0	0	multi-exon	FALSE	canonical	3	997	junction_13	138.805763569097	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGTGTCATCTTCTCCC	NA	False	NA	-1	True	AATAAA	-24	NA	28661765	28592672	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_28593813_28593925_28594085_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604649_28604881_28606396_28606490_28610914_28611001_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28661443
transcript_81934.nic	chr7	-	3478	21	NIC	ENSMUSG00000054808.16	novel	3877	21	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	395	junction_14	307.041247229098	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGGAAAAA	NA	False	NA	NA	False	AAAACA	-37	NA	28661771	28593077	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_28593813_28593925_28594085_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604649_28604881_28606396_28606490_28609327_28609414_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28661443
transcript_81942.known	chr7	-	647	7	FSM	ENSMUSG00000053565.11	ENSMUST00000207683.2	647	7	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_6	1263.25735259641	780	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTATTGTCTCTTGCCTGT	NA	False	NA	-5	True	AATAAA	-16	NA	28681212	28670797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_28670864_28671956_28672083_28673573_28673652_28674027_28674095_28676625_28676701_28677294_28677416_28681098
transcript_81946.known	chr7	-	774	8	FSM	ENSMUSG00000053565.11	ENSMUST00000066070.7	774	8	0	0	0	0	multi-exon	FALSE	canonical	3	2641	junction_1	370.651715060852	15958	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATTGTCTCTTGCCTGTA	NA	False	NA	-4	True	AATAAA	-17	NA	28681239	28670796	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_28670864_28671956_28672083_28673573_28673652_28674027_28674095_28676625_28676701_28677294_28677416_28679868_28679968_28681098
transcript_81947.known	chr7	-	1782	6	FSM	ENSMUSG00000053565.11	ENSMUST00000207762.2	1782	6	0	0	0	0	multi-exon	FALSE	canonical	3	3290	junction_2	212.6599162983	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACCTACAGAAAAACCC	NA	False	NA	NA	False	NA	NA	NA	28681208	28672341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_28673652_28674027_28674095_28676625_28676701_28677294_28677416_28679868_28679968_28681098
transcript_81948.known	chr7	-	909	7	FSM	ENSMUSG00000053565.11	ENSMUST00000208616.2	909	7	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	1639.14073017948	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGTAGGTGTGGTGTCT	NA	False	NA	NA	False	AATAAA	-21	NA	28681289	28671459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_28671711_28671956_28672083_28673573_28673652_28674027_28674095_28676625_28676701_28677294_28677416_28681098
transcript_81949.known	chr7	-	578	5	FSM	ENSMUSG00000053565.11	ENSMUST00000208707.2	578	5	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_3	1529.28437103764	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGAAGGCATAACTGGCT	NA	False	NA	NA	False	NA	NA	NA	28681230	28674068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_28674095_28676625_28676701_28677294_28677416_28679743_28679968_28681098
transcript_81952.known	chr7	+	2724	32	FSM	ENSMUSG00000037337.12	ENSMUST00000085835.8	2724	32	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_17	22.4346431975332	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTCGGAGGAGAGATTTT	NA	False	NA	22	True	AATAAA	-27	NA	28682252	28702703	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28682480_28682639_28682698_28682814_28682906_28683507_28683573_28686072_28686129_28686216_28686265_28686412_28686456_28686539_28686613_28687498_28687631_28688018_28688082_28688179_28688262_28688760_28688875_28689098_28689178_28690412_28690472_28690572_28690617_28690705_28690751_28692614_28692658_28693392_28693556_28693629_28693713_28694889_28694914_28695513_28695599_28697876_28697954_28698037_28698099_28699197_28699307_28699388_28699448_28699615_28699720_28700359_28700535_28701031_28701095_28701173_28701264_28701344_28701416_28701772_28701829_28702521
transcript_8196.known	chr10	+	931	4	FSM	ENSMUSG00000003072.16	ENSMUST00000003156.15	931	4	0	0	0	0	multi-exon	FALSE	canonical	3	2420	junction_3	40.5983031938802	29093	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGTTTCTAACTGCAC	4445	False	NA	20	True	ATTAAA	-19	NA	79978148	79981652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79978441_79979665_79979820_79981052_79981142_79981256
transcript_81961.nnic	chr7	+	546	6	NNC	ENSMUSG00000037337.12	novel	523	5	NA	NA	-240	0	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_1	64.9966152964906	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCGGAGGAGAGATTTTT	6722	False	NA	23	True	AATAAA	-28	NA	28700726	28702704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_28700810_28701031_28701095_28701173_28701264_28701344_28701416_28701772_28701829_28702521
transcript_8197.known	chr10	+	781	3	FSM	ENSMUSG00000003072.16	ENSMUST00000105366.2	781	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	1205	1383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGAGTGTTCTGTTTCTAA	4500	False	NA	14	True	ATTAAA	-13	NA	79978203	79981646	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_79978441_79979665_79979820_79981256
transcript_81975.known	chr7	+	523	5	FSM	ENSMUSG00000037337.12	ENSMUST00000208784.2	523	5	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_2	9.82344135219425	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATTCTCGGAGGAGAGA	6962	False	NA	18	True	AATAAA	-23	NA	28700966	28702699	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28701095_28701173_28701264_28701344_28701416_28701772_28701829_28702521
transcript_81976.nnic	chr7	-	763	7	NNC	ENSMUSG00000030592.19	novel	15358	106	NA	NA	37808	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_6	5.14511634681104	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATTATTGTGTTGGTCAT	NA	False	NA	NA	False	AATAAA	-18	NA	28708300	28702768	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_28702979_28703158_28703211_28703849_28703951_28704207_28704273_28704919_28705077_28707808_28707944_28708257
transcript_81977.nnic	chr7	-	641	6	NNC	ENSMUSG00000030592.19	novel	15358	106	NA	NA	40513	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	6.43117407632541	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATTATTGTGTTGGTCAT	NA	False	NA	NA	False	AATAAA	-18	NA	28705595	28702768	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_28702979_28703158_28703211_28703849_28703951_28704207_28704273_28704919_28705077_28705539
transcript_81978.nic	chr7	-	1013	6	ISM	ENSMUSG00000030592.19	ENSMUST00000214374.2	15300	109	116204	0	37872	0	3prime_fragment	FALSE	canonical	2	13	junction_5	1.35646599662505	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATTATTGTGTTGGTCAT	NA	False	NA	NA	False	AATAAA	-18	NA	28708236	28702768	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_28702979_28703158_28703211_28703849_28703951_28704207_28704273_28704919_28705077_28707808
transcript_81989.known	chr7	+	698	3	FSM	ENSMUSG00000109017.2	ENSMUST00000207099.2	698	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATCTCCCCCAAACCACC	NA	False	NA	NA	False	NA	NA	NA	28728447	28729675	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28728527_28728944_28729078_28729189
transcript_81991.nnic	chr7	+	1884	14	NIC	ENSMUSG00000030589.16	novel	2296	17	NA	NA	2533	0	combination_of_known_splicesites	TRUE	canonical	3	10	junction_1	14.4868844989255	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACTGCCAGTCACACTCC	386	False	NA	20	True	AAAAAG	-19	NA	28837030	28851046	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_28837151_28839666_28839799_28839912_28840067_28842390_28842565_28844556_28844674_28845232_28845509_28847791_28847873_28847968_28848074_28848198_28848318_28848411_28848557_28849223_28849261_28849346_28849482_28849603_28849717_28850870
transcript_81999.known	chr7	-	1293	8	FSM	ENSMUSG00000030590.16	ENSMUST00000164589.9	1293	8	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_3	23.9565934002925	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGATCTTGTTTCTGTTAG	NA	False	NA	-1	True	AATAAA	-21	NA	28855659	28851934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_28852273_28852746_28852915_28853843_28853961_28854040_28854119_28854576_28854783_28855099_28855235_28855309_28855456_28855554
transcript_82004.known	chr7	-	1189	7	FSM	ENSMUSG00000030590.16	ENSMUST00000134176.8	1189	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	138.986410206978	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGATCTTGTTTCTGTT	NA	False	NA	-3	True	AATAAA	-19	NA	28855608	28851936	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_28852273_28852746_28852915_28853843_28853957_28854040_28854119_28854576_28854783_28855099_28855235_28855455
transcript_82006.nic	chr7	-	1366	7	NIC	ENSMUSG00000030590.16	novel	1293	8	NA	NA	2	0	intron_retention	FALSE	canonical	3	257	junction_3	24.5877114745467	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGATCTTGTTTCTGTTAG	NA	False	NA	-1	True	AATAAA	-21	NA	28855657	28851934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_28852273_28852746_28852915_28853843_28853961_28854040_28854119_28854576_28854783_28855099_28855456_28855554
transcript_8201.known	chr10	+	1321	7	FSM	ENSMUSG00000045193.14	ENSMUST00000105365.9	1321	7	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_6	33.736314097555	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGCTCTGACCATTTCCC	6129	False	NA	NA	False	ATTAAA	-18	NA	80003611	80007489	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80006527_80006599_80006815
transcript_82017.known	chr7	-	2169	7	FSM	ENSMUSG00000030590.16	ENSMUST00000147561.8	2169	7	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_2	24.4386988196999	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGATCTTGTTTCTGTT	NA	False	NA	-3	True	AATAAA	-19	NA	28855608	28851936	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_28852273_28852746_28853961_28854040_28854119_28854576_28854783_28855099_28855235_28855309_28855456_28855554
transcript_8202.known	chr10	+	834	8	FSM	ENSMUSG00000045193.14	ENSMUST00000054666.7	834	8	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_6	141.847863313236	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCGACTCTGTGGCTTGG	6191	False	NA	NA	False	AATAAA	-17	NA	80003673	80008620	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80006527_80006599_80008247_80008347_80008470
transcript_82038.known	chr7	+	1153	8	FSM	ENSMUSG00000030588.13	ENSMUST00000142519.3	1153	8	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	530.605237787328	529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGGGCCTTCTTCTCCTT	6235	False	NA	28	True	NA	NA	NA	28937951	28947022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28938019_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
transcript_8204.known	chr10	+	678	3	FSM	ENSMUSG00000035595.7	ENSMUST00000041882.7	678	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	13	474	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGTGTCCTGGTGAAGT	NA	False	NA	43	True	AATGAA	-45	NA	80008777	80010980	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80009009_80010042_80010160_80010650
transcript_82042.known	chr7	+	1086	7	FSM	ENSMUSG00000030588.13	ENSMUST00000108237.2	1086	7	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_5	686.982471877316	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAATGGGGGGCCTTCTTCT	6160	False	NA	24	True	NA	NA	NA	28937876	28947018	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28938037_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945325_28945420_28946661
transcript_82047.known	chr7	-	1466	4	FSM	ENSMUSG00000030587.6	ENSMUST00000032808.6	1466	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_3	7.36357401145817	900	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTGGGCTCTTTTTTTTT	1783	False	NA	NA	False	AATAGA	-4	NA	28947891	28945985	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_28947160_28947321_28947391_28947552_28947666_28947781
transcript_82053.known	chr7	+	1126	8	FSM	ENSMUSG00000030588.13	ENSMUST00000108238.8	1126	8	0	0	0	0	multi-exon	FALSE	canonical	3	755	junction_1	273.775194535329	4182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGCCTCCACTTCTGACC	6037	False	NA	12	True	AATAAA	-15	NA	28937753	28946954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28937862_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
transcript_82054.known	chr7	+	1111	8	FSM	ENSMUSG00000030588.13	ENSMUST00000032809.10	1111	8	0	0	0	0	multi-exon	FALSE	canonical	3	488	junction_1	365.371993833067	2131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGCCTCCACTTCTGACC	6061	False	NA	12	True	AATAAA	-15	NA	28937777	28946954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28937871_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
transcript_82057.known	chr7	-	1384	7	FSM	ENSMUSG00000074227.13	ENSMUST00000098604.12	1384	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	452.801066204084	273	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACTATGTAGTTTGGTTT	467	False	NA	-16	True	AATAAA	-21	NA	28981337	28955765	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_28956263_28957592_28957632_28957851_28958014_28958823_28958878_28959795_28959856_28963019_28963191_28980936
transcript_82066.known	chr7	+	950	4	FSM	ENSMUSG00000037166.6	ENSMUST00000048187.6	950	4	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_2	2.05480466765633	544	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTGCACAATGGGTTTAG	4007	False	NA	NA	False	ATTAAA	-19	NA	28988736	28993226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_28988961_28990934_28991016_28991475_28991509_28992614
transcript_82068.known	chr7	+	1574	12	FSM	ENSMUSG00000030584.15	ENSMUST00000065181.12	1574	12	0	0	0	0	multi-exon	TRUE	canonical	3	23	junction_1	16.304438375602	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATTAATATATACAAAGAG	5825	False	NA	NA	False	AAAAAG	-27	NA	29007436	29016328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29007524_29008835_29008997_29009069_29009178_29010689_29010818_29011031_29011122_29012272_29012352_29012506_29012639_29013563_29013615_29013707_29013828_29015048_29015162_29015668_29015751_29015905
transcript_8207.known	chr10	+	2640	14	FSM	ENSMUSG00000020156.17	ENSMUST00000020365.15	2640	14	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_1	105.419758317817	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCATAGTCATTGCACA	8218	False	NA	19	True	TATAAA	-17	NA	80062267	80079737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80062539_80064155_80064273_80064828_80064915_80065890_80065962_80068071_80068882_80070056_80070162_80071944_80072016_80074148_80074226_80074693_80074755_80075753_80075830_80076225_80076277_80076597_80077035_80077630_80077720_80079419
transcript_82071.known	chr7	-	1095	4	FSM	ENSMUSG00000049123.11	ENSMUST00000207130.2	1095	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.942809041582063	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTGTTCGTTTGTTTT	NA	False	NA	NA	False	AATGAA	-11	NA	29426457	29422992	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_29423672_29424459_29424514_29424621_29424879_29426352
transcript_82072.known	chr7	+	4113	5	FSM	ENSMUSG00000046185.11	ENSMUST00000032802.5	4113	5	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_4	7.79021822544144	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATTAGGGAAAAAAGA	NA	False	NA	NA	False	AAGAAA	-21	NA	29467976	29479246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29468121_29470763_29470829_29474762_29474890_29475329_29475417_29475556
transcript_82076.known	chr7	+	3558	5	FSM	ENSMUSG00000047473.15	ENSMUST00000032803.12	3558	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	9.39414711402797	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGATGTTAAACATGAATT	NA	False	NA	NA	False	AATAAA	-16	NA	29483422	29494127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29484327_29485643_29485729_29487473_29487601_29488762_29488862_29491784
transcript_82077.nic	chr7	+	1572	4	NIC	ENSMUSG00000047473.15	novel	3707	4	NA	NA	-6	-2122	combination_of_known_junctions	FALSE	canonical	2	12	junction_3	6.97614984548545	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTATTTGTATGGTTGCT	NA	False	NA	NA	False	AAGAAA	-12	NA	29483416	29489215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_29484327_29485643_29485729_29487473_29487601_29488765
transcript_82078.known	chr7	+	3707	4	FSM	ENSMUSG00000047473.15	ENSMUST00000126504.2	3707	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	10.7806410858642	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	29483447	29491337	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29484327_29485599_29485729_29487473_29487601_29488765
transcript_82079.known	chr7	+	3376	5	FSM	ENSMUSG00000011427.17	ENSMUST00000032796.14	3376	5	0	0	0	0	multi-exon	TRUE	canonical	3	32	junction_1	5.78791845139511	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTACACTTTTCACTGCTG	NA	False	NA	NA	False	GATAAA	-24	NA	29515543	29530365	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29515715_29522404_29522570_29524254_29524379_29525116_29525213_29527545
transcript_82083.nnic	chr7	-	2863	5	NNC	ENSMUSG00000050855.17	novel	2764	5	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_4	9.83298021964857	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGGTGTGACTTTGTGGTG	3416	False	NA	-4	True	AATAAA	-21	NA	29553101	29543360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_29545674_29545893_29545990_29546258_29546386_29550366_29550443_29552850
transcript_82084.known	chr7	-	2764	5	FSM	ENSMUSG00000050855.17	ENSMUST00000085792.5	2764	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	10.6624340560681	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGGTGTGACTTTGTGGTG	3444	False	NA	-4	True	AATAAA	-21	NA	29553073	29543360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_29545674_29545893_29545990_29546258_29546386_29550366_29550443_29552921
transcript_82086.known	chr7	-	3712	4	FSM	ENSMUSG00000050855.17	ENSMUST00000145098.2	3712	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	12.2836838484589	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAATTGGTGTGTGTGTGT	3451	False	NA	NA	False	ATTAAA	-40	NA	29553066	29542674	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_29545674_29545893_29546386_29550366_29550443_29552921
transcript_82087.known	chr7	+	2537	4	FSM	ENSMUSG00000058402.15	ENSMUST00000074876.13	2537	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	4.02768199119819	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTAGCTGCTATTTTCATT	NA	False	NA	NA	False	CATAAA	-1	NA	29559403	29575930	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29559519_29560440_29560494_29572316_29572359_29573603
transcript_82091.known	chr7	+	2744	3	FSM	ENSMUSG00000058402.15	ENSMUST00000057652.7	2744	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	17.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAATGTGTAGTTTTGTG	NA	False	NA	NA	False	GATAAA	-19	NA	29559465	29576252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29559519_29572316_29572359_29573603
transcript_82094.known	chr7	+	2982	2	FSM	ENSMUSG00000058402.15	ENSMUST00000145952.2	2982	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGAAAGAGTGTTTTATC	NA	False	NA	NA	False	AATAAA	-14	NA	29559435	29576717	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29559519_29573818
transcript_82095.known	chr7	+	2202	2	FSM	ENSMUSG00000058402.15	ENSMUST00000148489.3	2202	2	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGATTGTGTTTTCTCAA	NA	False	NA	NA	False	TATAAA	-25	NA	29559428	29562552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29559519_29560440
transcript_82099.known	chr7	-	3845	5	FSM	ENSMUSG00000062040.15	ENSMUST00000162592.8	3845	5	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_4	18.5522909636519	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTATCATGTCTTTTGAAT	NA	False	NA	NA	False	AAAAAG	-21	NA	29605997	29592757	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_29595852_29598176_29598304_29599662_29599764_29603324_29603485_29605634
transcript_82100.known	chr7	-	3150	5	FSM	ENSMUSG00000062040.15	ENSMUST00000053521.15	3150	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_4	19.4084388862165	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATCTTCTCTTCTGTCAC	NA	False	NA	0	True	AATATA	-16	NA	29605529	29593140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_29595852_29598176_29598304_29599662_29599764_29603324_29603485_29605478
transcript_82101.known	chr7	+	2614	5	FSM	ENSMUSG00000099689.7	ENSMUST00000186475.2	2614	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	3.53553390593274	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTAAGTTTCATAATTTTC	NA	False	NA	27	True	AATAAA	-24	NA	29607941	29616232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29608077_29609607_29609673_29611593_29611721_29612014_29612111_29614041
transcript_82104.known	chr7	+	3428	1	FSM	ENSMUSG00000109105.2	ENSMUST00000208490.2	3428	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGGTGGTCGCGTCGTTCT	NA	False	NA	NA	False	NA	NA	NA	29626402	29629830	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29626400_29629800
transcript_8211.known	chr10	+	983	9	FSM	ENSMUSG00000020153.15	ENSMUST00000105364.8	983	9	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	752.129476885463	16789	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGTGTTCTGTGTGGAC	9361	False	NA	24	True	AATAAA	-15	NA	80084954	80092627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80085039_80085145_80085326_80088230_80088268_80088907_80088992_80089493_80089618_80090673_80090854_80090923_80090971_80091757_80091847_80092469
transcript_82120.known	chr7	+	809	5	FSM	ENSMUSG00000063623.5	ENSMUST00000239012.2	809	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	40.4722126896961	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGGCACCACCGATCTTG	NA	False	NA	NA	False	NA	NA	NA	29653087	29664773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29653382_29656384_29656460_29660317_29660445_29662570_29662667_29664556
transcript_82121.known	chr7	+	643	5	FSM	ENSMUSG00000063623.5	ENSMUST00000208342.2	643	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	40.6348065087063	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACCGTTCCAGCCCATGT	NA	False	NA	NA	False	NA	NA	NA	29655764	29664654	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29656012_29656384_29656460_29660317_29660445_29662570_29662667_29664556
transcript_82130.known	chr7	-	3711	5	FSM	ENSMUSG00000059975.16	ENSMUST00000108205.9	3711	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	11.8848643240047	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTGGATATTGCTCGTGG	NA	False	NA	NA	False	AATAAA	-16	NA	29651318	29632215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_29635469_29637024_29637121_29637366_29637494_29642915_29642971_29651138
transcript_82132.known	chr7	+	4005	10	FSM	ENSMUSG00000074221.13	ENSMUST00000148442.8	4005	10	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	68.6080296204101	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGAAATTTGTACACT	NA	False	NA	NA	False	NA	NA	NA	29683379	29724536	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29683654_29684684_29684752_29687013_29687232_29688473_29688533_29697174_29697302_29697539_29697636_29713264_29713315_29714490_29714615_29716591_29716688_29721642
transcript_82134.nnic	chr7	+	1191	7	NNC	ENSMUSG00000074221.13	novel	4005	10	NA	NA	-47	-6283	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_6	92.0048307910454	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTGAAAGTGTGTGGCAG	NA	False	NA	NA	False	AATAAA	-29	NA	29683332	29708234	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_29683654_29684684_29684752_29687006_29687232_29688473_29688533_29697174_29697302_29697539_29697636_29707938
transcript_82136.nic	chr7	+	1064	4	NIC	ENSMUSG00000074221.13	novel	4005	10	NA	NA	-47	247	combination_of_known_junctions	FALSE	canonical	3	234	junction_3	16.0485374896143	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAATATTCATGTTTCTT	NA	False	NA	NA	False	AAGAAA	-19	NA	29683332	29688924	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_29683654_29684684_29684752_29687006_29687232_29688473
transcript_82138.nnic	chr7	-	2143	6	NIC	ENSMUSG00000053985.11	novel	3411	5	NA	NA	-14	348	combination_of_known_splicesites	FALSE	canonical	3	10	junction_3	3.65513337649941	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATACACTTGTATTATCTA	NA	False	NA	NA	False	NA	NA	NA	29750819	29737129	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_29738842_29742954_29743082_29744144_29744234_29745163_29745265_29749864_29749929_29750769
transcript_82139.nnic	chr7	-	540	6	NIC	ENSMUSG00000053985.11	novel	3411	5	NA	NA	-14	-1255	combination_of_known_splicesites	FALSE	canonical	3	10	junction_3	3.65513337649941	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTTCTGGTCTTAGTGATG	NA	False	NA	NA	False	ATTAAA	-15	NA	29750819	29738732	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_29738842_29742954_29743082_29744144_29744234_29745163_29745265_29749864_29749929_29750769
transcript_82140.known	chr7	-	3411	5	FSM	ENSMUSG00000053985.11	ENSMUST00000207873.2	3411	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	7.25861557047899	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATATGCCCAGATTGGTA	NA	False	NA	NA	False	AATAAA	-40	NA	29750805	29735783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_29738842_29742954_29743082_29744144_29744234_29745163_29745265_29750769
transcript_82141.known	chr7	-	2835	5	FSM	ENSMUSG00000053985.11	ENSMUST00000207072.2	2835	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	6.81909084849293	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCGAGGAAATGACTTCTTC	NA	False	NA	NA	False	ATTAAA	-18	NA	29750798	29736315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_29738842_29742954_29743082_29744144_29744234_29749864_29749929_29750769
transcript_82144.nnic	chr7	-	2093	6	NIC	ENSMUSG00000098022.8	novel	2181	7	NA	NA	-20	2	combination_of_known_splicesites	FALSE	canonical	3	9	junction_5	15.0332963783729	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTCCACTGTGTCCCAG	NA	False	NA	NA	False	ATTAAA	-18	NA	29772345	29755458	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_29756945_29761653_29761744_29765665_29765793_29767489_29767576_29769409_29769574_29772205
transcript_82145.nnic	chr7	-	1912	5	NIC	ENSMUSG00000098022.8	novel	2181	7	NA	NA	-3	2	combination_of_known_splicesites	FALSE	canonical	1	3	junction_4	15.8804124631572	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTCCACTGTGTCCCAG	NA	False	NA	NA	False	ATTAAA	-18	NA	29772328	29755458	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_29756945_29761653_29761744_29765665_29765793_29767489_29767576_29772205
transcript_82147.nnic	chr7	-	1679	4	NNC	ENSMUSG00000078768.3	novel	1709	4	NA	NA	34	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	52.6518966631044	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATCTGTGTGGCAGTGTAA	9871	False	NA	2	True	AAAACA	-22	NA	29789854	29776761	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_29778044_29780515_29780643_29786524_29786585_29789644
transcript_82148.known	chr7	-	2181	7	FSM	ENSMUSG00000098022.8	ENSMUST00000080834.15	2181	7	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_6	14.682756326158	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGTTCCACTGTGTCC	NA	False	NA	NA	False	ATTAAA	-15	NA	29772325	29755461	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_29756945_29761653_29761744_29765665_29765793_29767489_29767576_29769409_29769574_29771453_29771565_29772205
transcript_82149.known	chr7	-	2374	9	FSM	ENSMUSG00000058447.9	ENSMUST00000182746.2	2374	9	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_6	43.1955943934101	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTCCACTGTGTCCCAG	9890	False	NA	NA	False	ATTAAA	-18	NA	29789835	29755458	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_29756945_29761653_29761744_29765665_29765793_29767489_29767576_29769409_29769574_29771453_29771565_29780515_29780643_29786524_29786585_29789712
transcript_82150.known	chr7	-	1709	4	FSM	ENSMUSG00000078768.3	ENSMUST00000088785.6	1709	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	16.2685791225499	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATCTGTGTGGCAGTGTAA	9923	False	NA	2	True	AAAACA	-22	NA	29789952	29776761	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_29778044_29780515_29780643_29786524_29786585_29789712
transcript_82151.known	chr7	+	3604	3	FSM	ENSMUSG00000049421.14	ENSMUST00000108200.2	3604	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	44	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTGATCCTTTGTTGTT	NA	False	NA	5	True	NA	NA	NA	29794609	29807039	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29794637_29798952_29799148_29803657
transcript_82154.known	chr7	+	641	2	FSM	ENSMUSG00000049421.14	ENSMUST00000149302.2	641	2	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTTTACATCTGTACTGAA	NA	False	NA	NA	False	NA	NA	NA	29794586	29799543	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29794637_29798952
transcript_82155.known	chr7	+	2117	5	FSM	ENSMUSG00000074220.11	ENSMUST00000098596.11	2117	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	7.82224392358101	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTTGAAAATGAAGGCTT	5259	False	NA	NA	False	NA	NA	NA	29821366	29834375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29821502_29825192_29825267_29830125_29830253_29830956_29831050_29832687
transcript_82161.known	chr7	-	2029	2	FSM	ENSMUSG00000037029.9	ENSMUST00000062181.9	2029	2	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGCAGAAATAAAGAAATGC	NA	False	NA	NA	False	AGTAAA	-25	NA	29869152	29860693	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_29862654_29869083
transcript_82162.nic	chr7	-	2978	2	NIC	ENSMUSG00000037029.9	novel	585	3	NA	NA	-4	777	intron_retention	FALSE	canonical	3	14	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATATTCTTAAATCCTTCT	NA	False	NA	-4	True	ATTAAA	-14	NA	29869179	29859916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_29862799_29869083
transcript_82163.known	chr7	-	1263	1	FSM	ENSMUSG00000037029.9	ENSMUST00000208923.2	1263	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACAAAAAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29869175	29867912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_29867900_29869200
transcript_82165.nnic	chr7	+	2020	4	NNC	ENSMUSG00000066647.9	novel	5117	3	NA	NA	-12	33375	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	13.29995822884	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTCAACACTACAGGCCA	9177	False	NA	NA	False	NA	NA	NA	29869287	29915124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_29869640_29875275_29875372_29877068_29878449_29914932
transcript_82166.known	chr7	+	5117	3	FSM	ENSMUSG00000066647.9	ENSMUST00000209028.2	5117	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	2	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGTTTCTCACGCGTGTG	9189	False	NA	NA	False	NA	NA	NA	29869299	29881749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29869640_29875275_29875372_29877068
transcript_82168.known	chr7	+	485	4	FSM	ENSMUSG00000074218.4	ENSMUST00000208441.2	485	4	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	502.814964861716	856	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGTGTCTACGCAGTGGA	5724	False	NA	72	True	NA	NA	NA	29883618	29885503	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29883765_29884509_29884597_29884699_29884785_29885336
transcript_82171.known	chr7	+	393	4	FSM	ENSMUSG00000074218.4	ENSMUST00000098594.4	393	4	0	0	0	0	multi-exon	FALSE	canonical	3	920	junction_1	139.802241279125	8895	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTCCAGCCTGTGTGT	5674	False	NA	24	True	AATAAA	-25	NA	29883568	29885455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29883671_29884509_29884597_29884699_29884785_29885336
transcript_82172.known	chr7	-	1600	12	FSM	ENSMUSG00000001794.14	ENSMUST00000001845.13	1600	12	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_11	486.143841584714	2992	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGTAACTTGGTTATTTT	8309	False	NA	-8	True	NA	NA	NA	29898236	29886366	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29893302_29893527_29894430_29894590_29898182
transcript_82175.known	chr7	-	1192	10	FSM	ENSMUSG00000001794.14	ENSMUST00000108196.8	1192	10	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_9	490.288577155219	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCGGACTCTGAGTGCTGA	NA	False	NA	-28	True	AATAAA	-21	NA	29892531	29886414	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29892454
transcript_82184.known	chr7	-	1241	9	FSM	ENSMUSG00000001794.14	ENSMUST00000207082.2	1241	9	0	0	0	0	multi-exon	FALSE	canonical	3	1474	junction_7	82.1492544092763	843	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGGTTATTTTTTTAAT	NA	False	NA	-2	True	NA	NA	NA	29892397	29886360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291
transcript_82185.known	chr7	-	1429	11	FSM	ENSMUSG00000001794.14	ENSMUST00000126116.3	1429	11	0	0	0	0	multi-exon	FALSE	canonical	3	766	junction_10	279.009032111866	1872	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAGTAACTTGGTTATTT	NA	False	NA	-9	True	NA	NA	NA	29894473	29886367	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29893302_29893527_29894430
transcript_82186.known	chr7	+	1106	2	FSM	ENSMUSG00000097817.3	ENSMUST00000181153.2	1106	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGCTGAGTGTGCACCT	NA	False	NA	NA	False	NA	NA	NA	29898054	29900314	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29898448_29899601
transcript_82201.known	chr7	+	508	5	FSM	ENSMUSG00000019738.16	ENSMUST00000108192.2	508	5	0	0	0	0	multi-exon	FALSE	canonical	3	1146	junction_4	46.0672063403024	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAGTGTTTCCCGTGTTTA	NA	False	NA	14	True	AATAAA	-14	NA	29931756	29932811	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29931962_29932174_29932249_29932331_29932407_29932491_29932544_29932709
transcript_82202.known	chr7	-	1416	6	FSM	ENSMUSG00000006095.13	ENSMUST00000006254.6	1416	6	0	0	0	0	multi-exon	FALSE	canonical	3	839	junction_4	26.4529771481397	7562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCAAGTCTCTTGATTCC	NA	False	NA	-5	True	NA	NA	NA	29931697	29923555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_29923773_29923897_29923971_29926268_29926461_29927028_29927126_29930550_29930695_29931004
transcript_82203.known	chr7	+	819	6	FSM	ENSMUSG00000019738.16	ENSMUST00000019882.16	819	6	0	0	0	0	multi-exon	FALSE	canonical	3	1146	junction_5	44.9239357136037	11667	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTCCCGTGTTTATTTC	NA	False	NA	18	True	AATAAA	-18	NA	29931372	29932815	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29931830_29931906_29931962_29932174_29932249_29932331_29932407_29932491_29932544_29932709
transcript_82204.known	chr7	+	488	6	FSM	ENSMUSG00000019738.16	ENSMUST00000108193.2	488	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	479.289724488226	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTAGTGTTTCCCGTGTTT	NA	False	NA	13	True	AATAAA	-13	NA	29931756	29932810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29931830_29931906_29931962_29932116_29932249_29932331_29932407_29932491_29932544_29932709
transcript_82205.known	chr7	-	502	3	FSM	ENSMUSG00000006095.13	ENSMUST00000141608.2	502	3	0	0	0	0	multi-exon	FALSE	canonical	3	871	junction_1	18	544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGTTGTGCAAGTCTCTT	NA	False	NA	-11	True	NA	NA	NA	29926486	29923561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_29923773_29923897_29923971_29926268
transcript_82206.known	chr7	+	435	5	FSM	ENSMUSG00000019738.16	ENSMUST00000138118.8	435	5	0	0	0	0	multi-exon	FALSE	canonical	3	1146	junction_4	46.6717259162333	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCCACCGCTGGACTGAGT	NA	False	NA	-47	True	NA	NA	NA	29931774	29932750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29931830_29931906_29931962_29932174_29932407_29932491_29932544_29932709
transcript_82207.known	chr7	+	578	4	FSM	ENSMUSG00000019738.16	ENSMUST00000145559.8	578	4	0	0	0	0	multi-exon	FALSE	canonical	3	1146	junction_3	50.6776303927307	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTAGTGTTTCCCGTGT	NA	False	NA	11	True	AATAAA	-11	NA	29931766	29932808	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29931962_29932174_29932407_29932491_29932544_29932709
transcript_82208.known	chr7	+	451	4	FSM	ENSMUSG00000019738.16	ENSMUST00000150841.2	451	4	0	0	0	0	multi-exon	FALSE	canonical	3	1146	junction_3	51.8609251320834	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGTTTCCCGTGTTTAT	NA	False	NA	15	True	AATAAA	-15	NA	29932027	29932812	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29932249_29932331_29932407_29932491_29932544_29932709
transcript_82209.known	chr7	+	285	2	FSM	ENSMUSG00000019738.16	ENSMUST00000138886.2	285	2	0	0	0	0	multi-exon	FALSE	canonical	3	1146	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACACTAGTGTTTCCCGTG	NA	False	NA	10	True	AATAAA	-10	NA	29932356	29932807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29932544_29932709
transcript_8221.known	chr10	+	722	8	FSM	ENSMUSG00000020153.15	ENSMUST00000157063.2	722	8	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_2	732.821330230511	769	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTTCTGTGTGGACT	9725	False	NA	25	True	AATAAA	-16	NA	80085318	80092628	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80085326_80088230_80088268_80088912_80088992_80089493_80089618_80090673_80090854_80090923_80090971_80091757_80091847_80092469
transcript_82213.nic	chr7	-	2609	13	ISM	ENSMUSG00000037020.17	ENSMUST00000108190.8	4742	33	-2	14915	-2	-5231	5prime_fragment	FALSE	canonical	1	41	junction_2	40.4621736934634	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAACTAAGGTGGA	NA	False	NA	NA	False	AATGAA	-33	NA	29979846	29954477	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_29955356_29957480_29957573_29960712_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573_29969757_29970103_29970242_29971031_29971203_29971751_29971810_29973372_29973436_29974526_29974619_29979580
transcript_82215.known	chr7	+	389	1	FSM	ENSMUSG00000081565.2	ENSMUST00000118272.2	389	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATTTTTGCTCAAAAAA	NA	False	NA	NA	False	AAGAAA	-4	NA	29962687	29963076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29962700_29963100
transcript_82216.known	chr7	+	1340	1	FSM	ENSMUSG00000013928.14	ENSMUST00000208866.2	1340	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	29979980	29981320	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_29980000_29981300
transcript_82217.known	chr7	-	648	2	FSM	ENSMUSG00000037020.17	ENSMUST00000152543.2	648	2	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAACCTTCCCTGTCTATA	3444	False	NA	-9	True	AATAAA	-16	NA	29940308	29939567	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_29939910_29940002
transcript_82218.known	chr7	-	4742	33	FSM	ENSMUSG00000037020.17	ENSMUST00000108190.8	4742	33	0	0	0	0	multi-exon	TRUE	canonical	1	9	junction_7	40.394139716517	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCCCTGTCTATAAAGCC	NA	False	NA	-4	True	AATAAA	-21	NA	29979844	29939562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_29939910_29940002_29940140_29940655_29941253_29941438_29941491_29941569_29941700_29941822_29941938_29942170_29942303_29942458_29942567_29942855_29942960_29943257_29943386_29943897_29943964_29944711_29944931_29947040_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957_29951070_29951740_29951817_29953407_29953530_29953610_29953679_29955229_29955356_29957480_29957573_29960712_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573_29969757_29970103_29970242_29971031_29971203_29971751_29971810_29973372_29973436_29974526_29974619_29979580
transcript_8222.known	chr10	+	420	3	FSM	ENSMUSG00000020153.15	ENSMUST00000152939.8	420	3	0	0	0	0	multi-exon	FALSE	canonical	3	1255	junction_1	451	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTTTGATTCTTGATTGT	9689	False	NA	NA	False	NA	NA	NA	80085282	80089247	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80085326_80088230_80088268_80088907
transcript_82230.known	chr7	+	750	5	FSM	ENSMUSG00000042831.14	ENSMUST00000143369.8	750	5	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_1	194.640052404432	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGGAGCAGGTGGGTCCT	NA	False	NA	NA	False	NA	NA	NA	30008278	30012121	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30008360_30008905_30008985_30009410_30009480_30011264_30011326_30011661
transcript_82233.known	chr7	+	1112	6	FSM	ENSMUSG00000042831.14	ENSMUST00000132193.8	1112	6	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_1	28.3125413906982	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCGTTTTGGATTTTTTTT	NA	False	NA	8	True	AATAAA	-15	NA	30008212	30013728	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661_30012133_30013343
transcript_82234.known	chr7	+	982	7	FSM	ENSMUSG00000042831.14	ENSMUST00000060834.12	982	7	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_5	88.8144132446981	1444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTTTTGGATTTTTTTTT	NA	False	NA	9	True	AATAAA	-16	NA	30008141	30013729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661_30011814_30012015_30012133_30013343
transcript_82235.known	chr7	+	427	4	FSM	ENSMUSG00000042831.14	ENSMUST00000139121.8	427	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	198.031983948721	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGCTTGTG	NA	False	NA	NA	False	AATAAA	-39	NA	30008237	30010475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30008260_30008905_30008985_30009410_30009480_30010218
transcript_82236.known	chr7	+	1355	8	FSM	ENSMUSG00000019737.15	ENSMUST00000054594.15	1355	8	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_4	40.5593543401494	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTGAGAATATCAGTACT	NA	False	NA	11	True	ATTAAA	-18	NA	30014240	30018471	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30014512_30014686_30014826_30015654_30015799_30015997_30016193_30016267_30016517_30017392_30017468_30018097_30018157_30018248
transcript_82237.known	chr7	+	1006	7	FSM	ENSMUSG00000019737.15	ENSMUST00000176304.8	1006	7	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	73.2385751423994	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTGAGAATATCAGTACT	NA	False	NA	11	True	ATTAAA	-18	NA	30014340	30018471	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30014512_30014686_30014826_30015654_30015799_30015997_30016193_30017392_30017468_30018097_30018157_30018248
transcript_82238.known	chr7	+	672	4	FSM	ENSMUSG00000019737.15	ENSMUST00000175902.2	672	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	89.1827088372828	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTGAGAATATCAGTACT	NA	False	NA	11	True	ATTAAA	-18	NA	30016196	30018471	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30016517_30017392_30017468_30018102_30018157_30018248
transcript_82239.known	chr7	+	477	4	FSM	ENSMUSG00000019737.15	ENSMUST00000176789.8	477	4	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_1	107.724958420352	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTCTGAGAATATCAGTA	NA	False	NA	9	True	ATTAAA	-16	NA	30016444	30018469	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30016567_30017392_30017468_30018097_30018157_30018248
transcript_8224.known	chr10	-	988	6	FSM	ENSMUSG00000020150.14	ENSMUST00000105363.8	988	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	3.91918358845308	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTTGGTTGGCAGTGAG	9249	False	NA	NA	False	AATAAA	-18	NA	80096846	80093984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80094292_80094773_80094885_80095010_80095079_80095434_80095499_80095601_80095748_80096554
transcript_82240.known	chr7	+	278	4	FSM	ENSMUSG00000019737.15	ENSMUST00000176571.2	278	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	102.112138793039	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGATGTCTGAGAATATC	NA	False	NA	5	True	ATTAAA	-12	NA	30016412	30018465	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30016517_30017392_30017468_30018097_30018109_30018377
transcript_82241.known	chr7	+	564	5	FSM	ENSMUSG00000030579.11	ENSMUST00000032800.10	564	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.22474487139159	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACAACGACTGAGTTAT	NA	False	NA	NA	False	AATAAA	-10	NA	30113212	30117002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30113325_30113766_30113794_30113928_30114076_30115056_30115101_30116768
transcript_82242.known	chr7	-	442	4	FSM	ENSMUSG00000064109.9	ENSMUST00000075062.5	442	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTAGTTTTATTCTTTCC	NA	False	NA	NA	False	AATAAA	-13	NA	30119279	30117136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30117272_30117512_30117645_30118043_30118068_30119128
transcript_82243.nnic	chr7	-	395	4	NNC	ENSMUSG00000064109.9	novel	442	4	NA	NA	-1813	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.471404520791032	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTAGTTTTATTCTTTCC	NA	False	NA	NA	False	AATAAA	-13	NA	30121092	30117136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_30117272_30117512_30117645_30118043_30118068_30120988
transcript_82244.known	chr7	+	2014	12	FSM	ENSMUSG00000036931.16	ENSMUST00000108176.9	2014	12	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	5.20965410250706	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGTGTGGTGTCATTAAA	NA	False	NA	16	True	ATTAAA	-16	NA	30121156	30128171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30121260_30122827_30122929_30123059_30123121_30123664_30123877_30124646_30124835_30124926_30125033_30125133_30125281_30125394_30125447_30125540_30125690_30126492_30126610_30126850_30127016_30127558
transcript_82245.known	chr7	+	2000	12	FSM	ENSMUSG00000036931.16	ENSMUST00000108175.8	2000	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.69616370829838	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGTGTGGTGTCATTAA	NA	False	NA	15	True	ATTAAA	-15	NA	30121830	30128170	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30121921_30122827_30122929_30123059_30123121_30123664_30123877_30124646_30124835_30124926_30125033_30125133_30125281_30125394_30125447_30125540_30125690_30126492_30126610_30126850_30127016_30127558
transcript_82248.nic	chr7	-	1681	9	ISM	ENSMUSG00000006651.9	ENSMUST00000208792.2	2472	16	4714	-6	-343	0	3prime_fragment	FALSE	canonical	3	360	junction_6	42.8711732986164	79	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCCGTGTTTCTGTTGGA	NA	False	NA	-2	True	AATAAA	-20	NA	30140200	30134406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_30134817_30134900_30135045_30135170_30135234_30135397_30135469_30135603_30135628_30136211_30136320_30137602_30137703_30139359_30139489_30139568
transcript_8225.nnic	chr10	-	808	6	NNC	ENSMUSG00000020150.14	novel	988	6	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	11.4821600755259	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTTGGTTGGCAGTGAG	9231	False	NA	NA	False	AATAAA	-18	NA	80096864	80093984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_80094292_80094773_80094885_80095010_80095079_80095434_80095499_80095601_80095748_80096752
transcript_82256.nic	chr7	-	1022	6	ISM	ENSMUSG00000006651.9	ENSMUST00000208792.2	2472	16	8393	-6	-93	0	3prime_fragment	FALSE	canonical	3	430	junction_4	31.3496411462715	642	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCCGTGTTTCTGTTGGA	NA	False	NA	-2	True	AATAAA	-20	NA	30136521	30134406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_30134817_30134900_30135045_30135170_30135234_30135397_30135469_30135603_30135628_30136211
transcript_82258.nic	chr7	-	1157	5	NIC	ENSMUSG00000006651.9	novel	2343	17	NA	NA	-93	0	intron_retention	FALSE	canonical	3	435	junction_4	29.8024747294583	82	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCCGTGTTTCTGTTGGA	NA	False	NA	-2	True	AATAAA	-20	NA	30136521	30134406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_30134817_30134900_30135045_30135170_30135234_30135397_30135628_30136211
transcript_8226.known	chr10	-	979	6	FSM	ENSMUSG00000020150.14	ENSMUST00000020359.7	979	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	12.2376468326227	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAGAAGACTAGTGGGTT	9293	False	NA	NA	False	AATAAA	-5	NA	80096802	80093997	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80094292_80094773_80094933_80095010_80095079_80095434_80095499_80095601_80095748_80096554
transcript_82264.known	chr7	-	3352	15	FSM	ENSMUSG00000036915.18	ENSMUST00000045817.14	3352	15	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_12	10.266102334521	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCAAATGTGCTTGTGAAAG	NA	False	NA	NA	False	AATAAA	-16	NA	30156940	30146960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30147880_30149261_30149328_30149802_30149904_30150226_30150326_30152105_30152326_30152478_30152580_30152836_30152970_30153060_30153189_30153438_30153588_30153662_30153769_30153933_30154085_30154596_30154758_30154889_30155040_30155844_30155995_30156222
transcript_82269.known	chr7	+	4608	30	FSM	ENSMUSG00000006649.18	ENSMUST00000006825.9	4608	30	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	25.8897782592191	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTTTAAAAAATTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	30159149	30186648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30159669_30159748_30159965_30160038_30160162_30160328_30160458_30160940_30161023_30161398_30161503_30162026_30162155_30162239_30162412_30162576_30162735_30162936_30163082_30163202_30163328_30164890_30165078_30165176_30165307_30165433_30165607_30166644_30166786_30166865_30167007_30167327_30167450_30170014_30170187_30170272_30170430_30170516_30170669_30173701_30173814_30173895_30174078_30177283_30177341_30180805_30180926_30181066_30181092_30181165_30181242_30181401_30181496_30181889_30182006_30186009_30186175_30186263
transcript_82273.known	chr7	-	1339	3	FSM	ENSMUSG00000087009.2	ENSMUST00000152625.2	1339	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	6	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGAATTTTCTACCATT	4717	False	NA	NA	False	NA	NA	NA	30165016	30161588	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30162370_30162652_30163068_30164873
transcript_82274.known	chr7	-	397	1	FSM	ENSMUSG00000109509.2	ENSMUST00000208689.2	397	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4044	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATTTTGGCTGATTTTT	9635	False	NA	-41	True	AAGAAA	-4	NA	30184522	30184125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30184100_30184500
transcript_82275.known	chr7	-	2465	12	FSM	ENSMUSG00000036864.17	ENSMUST00000215288.2	2465	12	0	0	0	0	multi-exon	TRUE	canonical	3	27	junction_11	10.5595517059866	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTTCCAGTTTACTGTT	NA	False	NA	-6	True	AATAAA	-16	NA	30251692	30238558	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30239008_30239173_30239256_30239343_30240263_30240345_30240522_30242911_30243040_30243115_30243199_30245549_30245651_30245727_30245853_30248465_30248634_30249031_30249129_30250182_30250260_30251632
transcript_8228.nnic	chr10	-	926	6	NNC	ENSMUSG00000020150.14	novel	988	6	NA	NA	-52	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	11.6206712370672	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGGGTTGGTTGGCAGT	9197	False	NA	NA	False	AATAAA	-15	NA	80096898	80093987	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_80094181_80094773_80094885_80095010_80095079_80095434_80095499_80095601_80095748_80096554
transcript_82283.known	chr7	-	1312	9	FSM	ENSMUSG00000036845.13	ENSMUST00000108164.8	1312	9	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_8	74.6976196073208	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGACAAATCTCAAGTGCA	4693	False	NA	-10	True	NA	NA	NA	30259263	30254869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30255034_30255112_30255187_30255273_30255415_30256282_30256450_30256524_30256611_30256689_30256720_30257050_30257102_30257307_30257510_30258866
transcript_82288.known	chr7	+	1363	3	FSM	ENSMUSG00000036854.15	ENSMUST00000044048.8	1363	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	10.5	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCTTATGTCTGGGCCAG	NA	False	NA	12	True	AATAAA	-20	NA	30252692	30254868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30252958_30253686_30253810_30253893
transcript_82290.known	chr7	+	1298	3	FSM	ENSMUSG00000036854.15	ENSMUST00000123355.8	1298	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	8.5	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAACTGCCTTATGTCTGGG	NA	False	NA	8	True	AATAAA	-16	NA	30251948	30254864	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30252153_30253686_30253810_30253893
transcript_82291.known	chr7	-	998	9	FSM	ENSMUSG00000036845.13	ENSMUST00000043975.11	998	9	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_2	22.8363744933385	674	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATCTCAAGTGCATTTA	4885	False	NA	-6	True	NA	NA	NA	30259071	30254865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30255034_30255112_30255187_30255273_30255415_30256282_30256450_30256524_30256611_30256689_30256720_30257050_30257102_30257307_30257384_30258866
transcript_82292.known	chr7	-	412	3	FSM	ENSMUSG00000036845.13	ENSMUST00000146548.2	412	3	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_2	35	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGACAAATCTCAAGTGCAT	8510	False	NA	-9	True	NA	NA	NA	30255446	30254868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30255034_30255112_30255187_30255273
transcript_82297.known	chr7	+	583	8	FSM	ENSMUSG00000078765.12	ENSMUST00000163330.3	583	8	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	197.894529732277	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCCGAGAAAGGAACCGACG	NA	False	NA	NA	False	NA	NA	NA	30262731	30264550	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30262775_30262981_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
transcript_82300.nic	chr7	+	896	8	NIC	ENSMUSG00000078765.12	novel	884	8	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	74	junction_1	181.681713163321	496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTCTGTGGTTTCCTTC	NA	False	NA	32	True	AATAAA	-20	NA	30262704	30264786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_30262825_30262981_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
transcript_82302.known	chr7	+	747	7	FSM	ENSMUSG00000078765.12	ENSMUST00000166960.8	747	7	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	260.100888545622	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAATCAAGGTCTGTGGT	NA	False	NA	25	True	AATAAA	-13	NA	30262725	30264779	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30262775_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264519
transcript_82311.known	chr7	+	500	7	FSM	ENSMUSG00000078765.12	ENSMUST00000164365.8	500	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	262.734128392606	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACGGGTGCCCTTGCTCTCC	NA	False	NA	NA	False	NA	NA	NA	30262819	30264604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30262825_30262981_30263045_30263354_30263422_30263506_30263557_30263898_30264033_30264127_30264224_30264519
transcript_82319.known	chr7	+	399	6	FSM	ENSMUSG00000078765.12	ENSMUST00000167202.8	399	6	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_5	293.022592985592	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGAGACGGGTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	30262791	30264597	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30262834_30262981_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30264519
transcript_82320.known	chr7	+	502	6	FSM	ENSMUSG00000078765.12	ENSMUST00000163276.8	502	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	288.317463917814	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGCATGGTCGCTTCTGAG	NA	False	NA	NA	False	NA	NA	NA	30262760	30264585	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30262825_30262981_30263045_30263354_30263422_30263506_30263557_30263627_30263820_30264519
transcript_82322.known	chr7	+	883	6	FSM	ENSMUSG00000078765.12	ENSMUST00000168555.8	883	6	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	210.947955666795	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTCGCTTCTGAGACGG	NA	False	NA	NA	False	NA	NA	NA	30262763	30264589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30262825_30262981_30263045_30263354_30263422_30263506_30264033_30264127_30264224_30264519
transcript_82327.known	chr7	+	656	5	FSM	ENSMUSG00000078765.12	ENSMUST00000169911.8	656	5	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	238.867117871004	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGTAGTGTAAAAGTAGG	NA	False	NA	NA	False	NA	NA	NA	30262754	30264033	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30262825_30262981_30263045_30263354_30263422_30263506_30263557_30263627
transcript_8233.known	chr10	+	1994	12	FSM	ENSMUSG00000069565.13	ENSMUST00000092305.6	1994	12	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_4	263.9061002555	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGTGCTGTCTGCTTGT	NA	False	NA	12	True	AATAAA	-21	NA	80100907	80124242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80101013_80109840_80109882_80110281_80110449_80110637_80110704_80113405_80113517_80114066_80114116_80116762_80116846_80118857_80119012_80120063_80120094_80120242_80120384_80121083_80121261_80123372
transcript_82332.known	chr7	-	488	4	FSM	ENSMUSG00000036835.8	ENSMUST00000208628.2	488	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	378.867611002401	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCTGGGCACTCCCTAAC	904	False	NA	NA	False	NA	NA	NA	30263052	30261438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30261560_30261748_30261854_30262220_30262364_30262933
transcript_82333.known	chr7	-	414	3	FSM	ENSMUSG00000036835.8	ENSMUST00000207972.2	414	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	389.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTAGGCTTTCCCTCAG	1772	False	NA	-85	True	NA	NA	NA	30262184	30261369	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30261560_30261748_30261854_30262065
transcript_82335.known	chr7	-	708	4	FSM	ENSMUSG00000036835.8	ENSMUST00000043898.8	708	4	0	0	0	0	multi-exon	FALSE	canonical	3	560	junction_3	125.517595048131	9039	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGAGTTCTTGGGATCTT	1290	False	NA	-5	True	AATAAA	-17	NA	30262666	30261289	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30261560_30261748_30261854_30262220_30262364_30262476
transcript_82336.known	chr7	-	669	3	FSM	ENSMUSG00000036835.8	ENSMUST00000207747.2	669	3	0	0	0	0	multi-exon	FALSE	canonical	3	780	junction_1	38	1248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTTCTTGGGATCTTTC	1444	False	NA	-3	True	AATAAA	-19	NA	30262512	30261287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30261560_30261748_30261854_30262220
transcript_82337.known	chr7	+	781	7	FSM	ENSMUSG00000078765.12	ENSMUST00000163654.8	781	7	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_6	203.636454387606	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGTCTGTGGTTTCCTTCC	NA	False	NA	33	True	AATAAA	-21	NA	30262749	30264787	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264519
transcript_82338.known	chr7	+	835	8	FSM	ENSMUSG00000078765.12	ENSMUST00000166510.8	835	8	0	0	0	0	multi-exon	FALSE	canonical	1	16	junction_4	198.242173070398	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTCAATCAAGGTCTGT	NA	False	NA	22	True	AATAAA	-10	NA	30262750	30264776	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263527_30263627_30263727_30263898_30264033_30264127_30264224_30264519
transcript_82339.known	chr7	+	2890	11	FSM	ENSMUSG00000109378.2	ENSMUST00000108161.9	2890	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	272.411453503703	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGCCTGTCCTCATTAA	NA	False	NA	NA	False	AATAAA	-18	NA	30262774	30267385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263820_30263898_30264033_30264127_30264224_30264519_30265807_30266173_30266362_30266567_30266926_30267005
transcript_82340.known	chr7	+	728	5	FSM	ENSMUSG00000078765.12	ENSMUST00000169283.8	728	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_4	261.678595800268	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTGGTTTCCTTCCAC	NA	False	NA	35	True	AATAAA	-23	NA	30262802	30264789	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30264519
transcript_82342.known	chr7	-	1775	6	FSM	ENSMUSG00000006310.11	ENSMUST00000108151.3	1775	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_5	31.6771210813104	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGAGTCCAGACTTTTCC	NA	False	NA	0	True	AATAAA	-20	NA	30292367	30289105	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30290295_30290481_30291391_30292336
transcript_82343.nnic	chr7	-	1896	6	NIC	ENSMUSG00000006310.11	novel	1775	6	NA	NA	-22	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_4	21.6277599394852	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGAGTCCAGACTTTTCC	NA	False	NA	0	True	AATAAA	-20	NA	30298356	30289105	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30290295_30290481_30291391_30298204
transcript_82344.nnic	chr7	-	1813	6	NNC	ENSMUSG00000006310.11	novel	1775	6	NA	NA	-3915	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_5	30.7076537690524	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGAGTCCAGACTTTTCC	NA	False	NA	0	True	AATAAA	-20	NA	30302249	30289105	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30290295_30290481_30291391_30302180
transcript_82346.nnic	chr7	-	1658	6	NNC	ENSMUSG00000006310.11	novel	1775	6	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_4	30.1038203555628	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGAGTCCAGACTTTTCC	NA	False	NA	0	True	AATAAA	-20	NA	30298356	30289105	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30290295_30290719_30291391_30298204
transcript_82350.nnic	chr7	-	917	5	NNC	ENSMUSG00000006310.11	novel	1775	6	NA	NA	-3928	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	33.9512518178638	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGAGTCCAGACTTTTCC	NA	False	NA	0	True	AATAAA	-20	NA	30302262	30289105	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30290295_30302180
transcript_82357.nnic	chr7	-	840	3	NIC	ENSMUSG00000006310.11	novel	854	4	NA	NA	-18	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	41	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGAGTCCAGACTTTTCC	NA	False	NA	0	True	AATAAA	-20	NA	30298352	30289105	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_30289633_30289780_30289946_30298204
transcript_82359.known	chr7	-	854	4	FSM	ENSMUSG00000006310.11	ENSMUST00000108150.2	854	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	35.0269737329517	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGACGAGTCCAGACTTTT	NA	False	NA	-2	True	AATAAA	-18	NA	30298294	30289107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30289633_30289780_30289946_30290220_30290295_30298204
transcript_82360.nnic	chr7	-	1495	7	NNC	ENSMUSG00000006313.6	novel	1421	8	NA	NA	2615	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_6	11.4661337085446	157	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGCAGAGGAGCTTGTT	4522	False	NA	-8	True	AATAAA	-10	NA	30309657	30302516	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_30303068_30303196_30303281_30304485_30304666_30306299_30306408_30306555_30306631_30309038_30309240_30309361
transcript_82362.nnic	chr7	-	1230	6	NNC	ENSMUSG00000006313.6	novel	1421	8	NA	NA	4995	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_5	12.5698050899765	140	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGCAGAGGAGCTTGTT	6902	False	NA	-8	True	AATAAA	-10	NA	30307277	30302516	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_30303068_30303196_30303281_30304485_30304666_30306299_30306408_30306555_30306631_30307045
transcript_82364.nic	chr7	-	1448	6	ISM	ENSMUSG00000006313.6	ENSMUST00000006476.6	1421	8	2784	0	2784	0	3prime_fragment	FALSE	canonical	2	18	junction_3	10.1271911209377	145	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGCAGAGGAGCTTGTT	4691	False	NA	-8	True	AATAAA	-10	NA	30309488	30302516	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_30303068_30303196_30303281_30304485_30304666_30306299_30306408_30306555_30306631_30309038
transcript_82366.nic	chr7	-	1015	4	ISM	ENSMUSG00000006313.6	ENSMUST00000006476.6	1421	8	5773	0	5773	0	3prime_fragment	FALSE	canonical	3	18	junction_3	10.6144555520604	179	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGCAGAGGAGCTTGTT	7680	False	NA	-8	True	AATAAA	-10	NA	30306499	30302516	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_30303068_30303196_30303281_30304485_30304666_30306299
transcript_82372.known	chr7	-	354	3	FSM	ENSMUSG00000036751.8	ENSMUST00000208838.2	354	3	0	0	0	0	multi-exon	FALSE	canonical	1	31	junction_2	2796.5	825	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACATTGTGTGTATTACAC	NA	False	NA	-4	True	AATAAA	-18	NA	30325539	30316398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30316588_30322839_30322941_30325475
transcript_82373.known	chr7	-	618	4	FSM	ENSMUSG00000036751.8	ENSMUST00000075738.6	618	4	0	0	0	0	multi-exon	FALSE	canonical	3	5624	junction_1	329.368419183679	16947	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTATTATTGTGTGTGTG	NA	False	NA	NA	False	AATGAA	-20	NA	30325576	30316285	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30316588_30322839_30322941_30323924_30324039_30325475
transcript_82376.known	chr7	-	1784	10	FSM	ENSMUSG00000036733.17	ENSMUST00000042726.14	1784	10	0	0	0	0	multi-exon	FALSE	canonical	3	640	junction_5	133.345925331332	1187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCTGACTGGACTTAGAAA	3611	False	NA	-14	True	AATAAA	-16	NA	30349742	30340425	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30340646_30340732_30340928_30343923_30344042_30344250_30344584_30345091_30345268_30345343_30345410_30346984_30347060_30347155_30347241_30349008_30349145_30349362
transcript_82377.known	chr7	-	1526	9	FSM	ENSMUSG00000036733.17	ENSMUST00000108141.2	1526	9	0	0	0	0	multi-exon	TRUE	canonical	3	345	junction_5	209.790818435889	907	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGACTGGACTTAGAAACT	3784	False	NA	-12	True	AATAAA	-18	NA	30349569	30340423	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30340646_30340732_30340928_30343923_30344042_30344250_30344584_30345091_30345247_30346984_30347060_30347155_30347241_30349008_30349145_30349362
transcript_82378.known	chr7	-	2187	19	FSM	ENSMUSG00000078762.11	ENSMUST00000019697.9	2187	19	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_13	34.9573373142001	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGCACTGCCCAGTTTT	NA	False	NA	-9	True	AATAAA	-10	NA	30364419	30353140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30353481_30353594_30353728_30356373_30356504_30356586_30356699_30357023_30357170_30357262_30357344_30357927_30358091_30358277_30358409_30358487_30358552_30358713_30358839_30358964_30359023_30359518_30359602_30359683_30359754_30361053_30361214_30361293_30361400_30362360_30362386_30362519_30362553_30362647_30362711_30364255
transcript_82379.known	chr7	-	2070	19	FSM	ENSMUSG00000078762.11	ENSMUST00000132862.8	2070	19	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	57.7150567683839	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACTGCCCAGTTTTATCAA	NA	False	NA	-4	True	AATAAA	-15	NA	30364358	30353135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30353481_30353594_30353728_30356373_30356443_30356586_30356699_30357023_30357170_30357262_30357344_30357927_30358091_30358277_30358409_30358487_30358552_30358713_30358839_30358964_30359023_30359518_30359602_30359683_30359754_30361053_30361214_30361293_30361400_30362360_30362386_30362519_30362553_30362647_30362711_30364255
transcript_82380.known	chr7	-	699	2	FSM	ENSMUSG00000049761.7	ENSMUST00000051495.7	699	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCCTGTGTCTGGGTGTA	NA	False	NA	NA	False	AATAAA	-21	NA	30371030	30370146	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30370606_30370790
transcript_82381.known	chr7	-	525	2	FSM	ENSMUSG00000049761.7	ENSMUST00000186845.2	525	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGAGCCCAATAAAATTGA	NA	False	NA	NA	False	NA	NA	NA	30371025	30370181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30370606_30370924
transcript_82382.known	chr7	+	612	4	FSM	ENSMUSG00000013083.9	ENSMUST00000207565.2	612	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCTATTCACCTGCTGC	3523	False	NA	NA	False	AATAAA	-17	NA	30398350	30399961	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30398412_30398981_30399034_30399197_30399406_30399670
transcript_82387.known	chr7	-	870	7	FSM	ENSMUSG00000006315.10	ENSMUST00000006478.10	870	7	0	0	0	0	multi-exon	FALSE	canonical	3	739	junction_6	21.1850314032233	5407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTTTGTTATGTCCATCT	9257	False	NA	-16	True	AGTAAA	-14	NA	30428965	30427129	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30427329_30427411_30427534_30427629_30427715_30427856_30427994_30428081_30428142_30428626_30428697_30428768
transcript_82388.known	chr7	-	774	7	FSM	ENSMUSG00000006315.10	ENSMUST00000207779.2	774	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	293.234831946457	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTATGTCCATCTCTCT	9290	False	NA	-12	True	AGTAAA	-18	NA	30428932	30427125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30427329_30427411_30427534_30427629_30427715_30427923_30427994_30428081_30428142_30428626_30428697_30428768
transcript_82389.known	chr7	-	727	6	FSM	ENSMUSG00000006315.10	ENSMUST00000209065.2	727	6	0	0	0	0	multi-exon	FALSE	canonical	3	791	junction_1	3.48711915483254	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTATGTCCATCTCTCT	-11	True	NA	-12	True	AGTAAA	-18	NA	30428746	30427125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30427329_30427411_30427534_30427629_30427715_30427856_30427994_30428081_30428142_30428626
transcript_82390.known	chr7	-	835	7	FSM	ENSMUSG00000006315.10	ENSMUST00000207263.2	835	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	291.92945304569	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTCAGTGAAGTAAACAGT	9288	False	NA	-45	True	NA	NA	NA	30428934	30427158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30427329_30427411_30427534_30427629_30427715_30427856_30427994_30428081_30428167_30428626_30428697_30428768
transcript_82391.known	chr7	-	875	7	FSM	ENSMUSG00000006315.10	ENSMUST00000207296.2	875	7	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	290.731118618791	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTTATGTCCATCTCT	9275	False	NA	-14	True	AGTAAA	-16	NA	30428947	30427127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30427329_30427411_30427555_30427629_30427715_30427856_30427994_30428081_30428142_30428626_30428697_30428768
transcript_82392.known	chr7	-	605	3	FSM	ENSMUSG00000006315.10	ENSMUST00000207955.2	605	3	0	0	0	0	multi-exon	FALSE	canonical	3	791	junction_1	4	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTATGTCCATCTCTCT	9165	False	NA	-12	True	AGTAAA	-18	NA	30427909	30427125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30427329_30427411_30427534_30427629
transcript_82395.nnic	chr7	+	1190	8	Fusion	ENSMUSG00000097320.9_ENSMUSG00000046056.16	novel	1276	6	NA	NA	-8	0	multi-exon	FALSE	canonical	2	3	junction_4	5.86584719075652	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTGGCTCACTGTGCTTCT	518	False	NA	22	True	AATAAA	-24	NA	30428995	30455559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr7_+_30429280_30431838_30432187_30434128_30434194_30435240_30435388_30436725_30436785_30454233_30454306_30454426_30454472_30455389
transcript_82399.nic	chr7	+	1131	7	Fusion	ENSMUSG00000097320.9_ENSMUSG00000046056.16	novel	1276	6	NA	NA	-8	0	multi-exon	FALSE	canonical	1	1	junction_4	6.02771377334171	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTGGCTCACTGTGCTTCT	518	False	NA	22	True	AATAAA	-24	NA	30428995	30455559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr7_+_30429280_30431838_30432187_30434128_30434194_30435240_30435388_30454233_30454306_30454426_30454472_30455389
transcript_82401.nic	chr7	+	1003	4	ISM	ENSMUSG00000097320.9	ENSMUST00000180820.8	1276	6	-8	9808	-8	-1378	5prime_fragment	FALSE	canonical	2	5	junction_1	4.18993502999218	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGGGGCTTACCATCAAC	518	False	NA	NA	False	AATACA	-20	NA	30428995	30435546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_30429280_30431838_30432187_30434128_30434194_30435240
transcript_82402.known	chr7	+	732	4	FSM	ENSMUSG00000046056.16	ENSMUST00000182229.8	732	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	6.94422221866655	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTGGCTCACTGTGCTTCT	8674	False	NA	22	True	AATAAA	-24	NA	30450895	30455559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30451341_30454233_30454306_30454426_30454472_30455389
transcript_82403.known	chr7	+	467	4	FSM	ENSMUSG00000097320.9	ENSMUST00000183194.2	467	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	5.09901951359278	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGAGTCATTACTTGTCC	3653	False	NA	NA	False	NA	NA	NA	30432130	30436924	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30432187_30434128_30434194_30435240_30435388_30436725
transcript_82404.known	chr7	+	662	7	FSM	ENSMUSG00000060962.13	ENSMUST00000041703.10	662	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.34370962471642	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTCTCTTGACTCCTTAT	NA	False	NA	NA	False	AATAAA	-22	NA	30475825	30480488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30475924_30477032_30477081_30477186_30477235_30477625_30477695_30479102_30479130_30479257_30479306_30480164
transcript_82422.known	chr7	+	403	6	FSM	ENSMUSG00000074199.8	ENSMUST00000190990.7	403	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	24.1694021440333	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGCTCCTGAATCTGTG	NA	False	NA	9	True	AATAAA	-14	NA	30487329	30490508	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30487448_30488929_30488969_30489137_30489180_30489336_30489382_30489992_30490041_30490397
transcript_82423.known	chr7	+	470	6	FSM	ENSMUSG00000074199.8	ENSMUST00000098559.3	470	6	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_5	10.9105453575887	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTTTCTGTCCTTATC	NA	False	NA	23	True	AATAAA	-28	NA	30487329	30490522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30487448_30488929_30488969_30489137_30489180_30489336_30489382_30489992_30490041_30490344
transcript_82424.known	chr7	+	420	5	FSM	ENSMUSG00000074199.8	ENSMUST00000187493.7	420	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	32.322592717788	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGAATCTGTGTTTCTG	NA	False	NA	15	True	AATAAA	-20	NA	30487329	30490514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30487448_30488929_30488969_30489336_30489382_30489992_30490041_30490344
transcript_82425.known	chr7	+	323	3	FSM	ENSMUSG00000074199.8	ENSMUST00000189962.7	323	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	42	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTCCTGAATCTGTGTT	NA	False	NA	11	True	AATAAA	-16	NA	30487329	30490510	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30487448_30488929_30488969_30490344
transcript_82426.known	chr7	+	345	5	FSM	ENSMUSG00000074199.8	ENSMUST00000189673.7	345	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	35.6370593624109	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGTTTTCCACTCAAGT	NA	False	NA	-7	True	NA	NA	NA	30487329	30490492	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30487448_30488929_30488969_30489336_30489382_30489992_30490041_30490397
transcript_82427.known	chr7	+	217	3	FSM	ENSMUSG00000074199.8	ENSMUST00000190480.2	217	3	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGAGGAACCCCATGCCTT	NA	False	NA	NA	False	NA	NA	NA	30487320	30489188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_30487448_30488929_30488969_30489137
transcript_82429.known	chr7	-	1625	2	FSM	ENSMUSG00000019429.8	ENSMUST00000094583.2	1625	2	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	0	211	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAGAAAATAATGTTTC	7666	False	NA	NA	False	AATAAA	-13	NA	30555603	30553754	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30555330_30555553
transcript_82430.nic	chr7	-	1619	4	ISM	ENSMUSG00000030577.15	ENSMUST00000189718.7	3672	13	10514	-427	5484	0	3prime_fragment	FALSE	canonical	2	5	junction_1	0.471404520791032	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTGGTCATAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	30567360	30564826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_30566088_30566442_30566528_30566886_30567006_30567206
transcript_82431.nic	chr7	-	1194	4	ISM	ENSMUSG00000030577.15	ENSMUST00000189718.7	3672	13	10514	-2	5484	0	3prime_fragment	FALSE	canonical	2	5	junction_1	0.471404520791032	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTTGTATTGGTGATTG	NA	False	NA	NA	False	ATTAAA	-23	NA	30567360	30565251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_30566088_30566442_30566528_30566886_30567006_30567206
transcript_82433.known	chr7	-	2419	10	FSM	ENSMUSG00000058239.14	ENSMUST00000058860.14	2419	10	0	0	0	0	multi-exon	TRUE	canonical	3	69	junction_9	26.650458036969	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTCTTTGGCCTTACCA	8764	False	NA	NA	False	NA	NA	NA	30656228	30644672	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30646095_30646175_30646305_30646389_30646485_30654168_30654228_30654530_30654619_30654714_30654866_30655224_30655426_30655573_30655693_30655806_30655854_30656120
transcript_82434.known	chr7	-	960	10	FSM	ENSMUSG00000058239.14	ENSMUST00000162228.9	960	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	43.1176970914396	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCGCCGGCTCACCCTTC	8810	False	NA	NA	False	NA	NA	NA	30656182	30646004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30646095_30646175_30646305_30646389_30646485_30654168_30654228_30654530_30654619_30654714_30654866_30655305_30655426_30655573_30655693_30655806_30655854_30656120
transcript_82435.known	chr7	-	2021	10	FSM	ENSMUSG00000001247.17	ENSMUST00000205961.2	2021	10	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_7	47.1029867208513	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATCTAAGCCTCTTGTTT	NA	False	NA	-7	True	AATAAA	-13	NA	30672747	30657203	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30657327_30657413_30658046_30658174_30658307_30658399_30658460_30658577_30658740_30661522_30661670_30662235_30662293_30665393_30665514_30671292_30671638_30672504
transcript_82439.known	chr7	-	849	9	FSM	ENSMUSG00000058239.14	ENSMUST00000108119.10	849	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	40.847085269331	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCGCCGGCTCACCCTTC	8801	False	NA	NA	False	NA	NA	NA	30656191	30646004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30646095_30646175_30646305_30646389_30646485_30654168_30654228_30654530_30654619_30654714_30654866_30655573_30655693_30655806_30655854_30656120
transcript_82442.known	chr7	-	2071	9	FSM	ENSMUSG00000001247.17	ENSMUST00000108116.10	2071	9	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_6	34.291945118351	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTAAGCCTCTTGTTTTG	NA	False	NA	-5	True	AATAAA	-15	NA	30672852	30657201	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30657327_30657413_30658046_30658174_30658307_30658399_30658460_30658577_30658740_30661522_30661670_30665393_30665514_30671292_30671638_30672504
transcript_82445.known	chr7	-	1930	8	FSM	ENSMUSG00000001247.17	ENSMUST00000098553.11	1930	8	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_5	67.6955971799571	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTTGTTTTGCTGCACG	NA	False	NA	2	True	AATAAA	-22	NA	30672851	30657194	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30657327_30657413_30658046_30658174_30658307_30658399_30658460_30658577_30658740_30665393_30665514_30671292_30671638_30672504
transcript_82455.known	chr7	-	410	3	FSM	ENSMUSG00000050440.9	ENSMUST00000062620.9	410	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGGTGTCTAGGTTTTTT	6695	False	NA	NA	False	AATAAA	-19	NA	30643457	30641792	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30642007_30642089_30642150_30643321
transcript_82458.known	chr7	-	762	9	FSM	ENSMUSG00000009687.15	ENSMUST00000162087.8	762	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	43.1753329460237	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCCCACCCTGGGGAG	2658	False	NA	-84	True	NA	NA	NA	30741565	30732231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30732444_30734633_30734709_30734810_30734841_30735860_30735942_30737245_30737354_30738462_30738520_30739607_30739683_30740821_30740895_30741514
transcript_82461.nnic	chr7	-	654	5	NNC	ENSMUSG00000009687.15	novel	593	5	NA	NA	849	0	intron_retention	FALSE	canonical	3	10	junction_4	35.9513560244951	312	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGCCTCTGTCTTCTGTG	7709	False	NA	-7	True	GATAAA	-19	NA	30736514	30732154	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_30732444_30734633_30734709_30734810_30734841_30735860_30735942_30736335
transcript_82462.nnic	chr7	-	606	5	NNC	ENSMUSG00000009687.15	novel	593	5	NA	NA	873	0	intron_retention	FALSE	canonical	3	7	junction_4	37.2449661028172	190	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGCCTCTGTCTTCTGTG	7733	False	NA	-7	True	GATAAA	-19	NA	30736490	30732154	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_30732444_30734633_30734709_30734810_30734841_30735860_30735942_30736359
transcript_82464.known	chr7	-	593	5	FSM	ENSMUSG00000009687.15	ENSMUST00000205301.2	593	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	35.9513560244951	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGCCTCTGTCTTCTGTG	6860	False	NA	-7	True	GATAAA	-19	NA	30737363	30732154	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30732444_30734633_30734709_30734810_30734841_30735860_30735942_30737245
transcript_82465.known	chr7	-	338	4	FSM	ENSMUSG00000036570.15	ENSMUST00000206030.2	338	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.471404520791032	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCGCTTGGTTGATATCA	NA	False	NA	-1	True	AATAAA	-19	NA	30752547	30751105	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30751241_30751357_30751413_30751552_30751603_30752449
transcript_82466.known	chr7	-	568	8	FSM	ENSMUSG00000036570.15	ENSMUST00000206305.2	568	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.451753951452626	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCGCTTGGTTGATATCAG	NA	False	NA	0	True	AATAAA	-20	NA	30755092	30751104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30751241_30751357_30751413_30751552_30751603_30752449_30752487_30752824_30752900_30753317_30753351_30753730_30753796_30754975
transcript_82467.nnic	chr7	-	477	7	NNC	ENSMUSG00000057092.13	novel	439	7	NA	NA	-124	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	0.5	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCAGGTGCCAGAGACTC	NA	False	NA	NA	False	TATAAA	-15	NA	30771838	30769961	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_30770146_30770276_30770315_30770586_30770624_30770716_30770792_30771499_30771524_30771605_30771639_30771752
transcript_82468.known	chr7	-	469	6	FSM	ENSMUSG00000057092.13	ENSMUST00000169313.8	469	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	0.489897948556636	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGGTGCCAGAGACTCTG	NA	False	NA	NA	False	TATAAA	-17	NA	30771714	30769959	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30770146_30770276_30770315_30770586_30770624_30770716_30770792_30771499_30771524_30771605
transcript_82469.known	chr7	-	1830	14	FSM	ENSMUSG00000001249.15	ENSMUST00000108102.9	1830	14	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_11	2.8658363092611	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCTGCGTCTACAAACGGA	9112	False	NA	NA	False	AATAAA	-20	NA	30814715	30798149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30798499_30798639_30798805_30798930_30799074_30799230_30799327_30801902_30802094_30802185_30802352_30802578_30802620_30802725_30802849_30802924_30803055_30808389_30808432_30808515_30808618_30810138_30810199_30814102_30814170_30814560
transcript_82470.known	chr7	-	1762	13	FSM	ENSMUSG00000001249.15	ENSMUST00000168884.8	1762	13	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_11	3.2945662334618	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCTGCGTCTACAAACGGA	9120	False	NA	NA	False	AATAAA	-20	NA	30814707	30798149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30798499_30798639_30798805_30798930_30799074_30799230_30799327_30801902_30802094_30802185_30802352_30802578_30802620_30802725_30802849_30802924_30803055_30808389_30808432_30808515_30808618_30814102_30814170_30814560
transcript_82477.known	chr7	-	2713	19	FSM	ENSMUSG00000001248.16	ENSMUST00000001280.14	2713	19	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_6	41.078853711152	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTACCTGTGGGG	5686	False	NA	-1	True	AATAAA	-15	NA	30850507	30829551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30833943_30835021_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30842971_30842993_30843081_30843299_30850320
transcript_82482.known	chr7	-	3722	18	FSM	ENSMUSG00000001248.16	ENSMUST00000185985.7	3722	18	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_17	34.4459860006517	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTACCTGTGGGG	5756	False	NA	-1	True	AATAAA	-15	NA	30850437	30829551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30842971_30842993_30843081_30843299_30850320
transcript_82484.known	chr7	-	482	2	FSM	ENSMUSG00000083434.2	ENSMUST00000117861.2	482	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTACACAAAGAAATAAAAT	2455	False	NA	NA	False	NA	NA	NA	33736857	33735871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_33736088_33736591
transcript_82485.known	chr7	-	968	7	FSM	ENSMUSG00000036459.16	ENSMUST00000140911.4	968	7	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_4	28.1286725997197	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGAGTGGGGAGGAGGGAC	NA	False	NA	NA	False	NA	NA	NA	33832243	33809650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_33809665_33816018_33816088_33816736_33816789_33818099_33818231_33818361_33818632_33824909_33825012_33831913
transcript_82487.known	chr7	-	2579	17	FSM	ENSMUSG00000052997.16	ENSMUST00000102746.11	2579	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	386.788858543974	3057	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTGCCCTAGTGGGTTT	NA	False	NA	0	True	AATAAA	-27	NA	33868000	33840112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_33840892_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33867797
transcript_82488.known	chr7	+	333	1	FSM	ENSMUSG00000081491.2	ENSMUST00000122341.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	NA	False	NA	NA	False	NA	NA	NA	33875136	33875469	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_33875100_33875500
transcript_82496.known	chr7	-	1295	7	FSM	ENSMUSG00000002635.12	ENSMUST00000002710.10	1295	7	0	0	0	0	multi-exon	FALSE	canonical	3	638	junction_2	61.3994209165599	2069	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTTTGGTTTATTGTTCA	5732	False	NA	-6	True	TATAAA	-15	NA	33896086	33883923	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_33884237_33885718_33885868_33888773_33888882_33892160_33892532_33895490_33895552_33895696_33895864_33895960
transcript_82497.known	chr7	-	959	6	FSM	ENSMUSG00000002635.12	ENSMUST00000148381.3	959	6	0	0	0	0	multi-exon	TRUE	canonical	3	50	junction_1	296.710903068964	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATATGTGTTTACCTTAT	5785	False	NA	NA	False	ATTAAA	-20	NA	33896033	33884057	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_33884237_33888773_33888882_33892160_33892532_33895490_33895552_33895696_33895864_33895960
transcript_82501.known	chr7	-	2884	18	FSM	ENSMUSG00000036427.6	ENSMUST00000038027.6	2884	18	0	0	0	0	multi-exon	FALSE	canonical	3	1600	junction_15	166.521152162862	1879	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTAGGGTTTTATTGCT	NA	False	NA	NA	False	AATAAA	-14	NA	33929761	33900754	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
transcript_82502.known	chr7	-	1601	9	FSM	ENSMUSG00000036427.6	ENSMUST00000206603.2	1601	9	0	0	0	0	multi-exon	FALSE	canonical	3	1600	junction_6	111.622060431619	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAGAAAAACCC	NA	False	NA	NA	False	NA	NA	NA	33929688	33914633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
transcript_82503.known	chr7	-	483	2	FSM	ENSMUSG00000086526.3	ENSMUST00000140881.3	483	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCCCCCAGATCTACAGC	NA	False	NA	NA	False	NA	NA	NA	33933527	33929844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_33930112_33933311
transcript_82506.known	chr7	-	624	3	FSM	ENSMUSG00000066571.14	ENSMUST00000132975.2	624	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	2	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCATTGAGGGTAGGATG	9814	False	NA	NA	False	NA	NA	NA	34012970	33984901	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_33985379_34011513_34011602_34012911
transcript_82507.known	chr7	-	6224	14	FSM	ENSMUSG00000066571.14	ENSMUST00000108074.8	6224	14	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_13	29.0706138861218	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTATCTTTTTTAAATT	9808	False	NA	NA	False	ATTAAA	-18	NA	34012976	33936131	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_33938663_33939168_33939248_33939933_33940072_33941664_33941831_33944390_33945404_33947531_33947658_33953411_33953510_33955836_33955996_33956771_33956934_33957056_33957153_33957437_33957579_33962977_33963176_33984126_33985379_34012911
transcript_82508.known	chr7	-	2055	2	FSM	ENSMUSG00000066571.14	ENSMUST00000206018.2	2055	2	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAAAAAAAAAGATTTATT	9809	False	NA	NA	False	NA	NA	NA	34012975	33983382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_33985379_34012916
transcript_82509.known	chr7	+	1112	1	FSM	ENSMUSG00000085105.3	ENSMUST00000205940.2	1112	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGGCAGTGGTGGCGCAC	NA	False	NA	NA	False	NA	NA	NA	33933865	33934977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_33933900_33935000
transcript_82510.known	chr7	+	4175	2	FSM	ENSMUSG00000085105.3	ENSMUST00000127010.2	4175	2	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	0	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAGAAAAAAAAGCA	NA	False	NA	NA	False	NA	NA	NA	33933801	33939632	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_33933921_33935576
transcript_82511.known	chr7	-	2944	11	FSM	ENSMUSG00000066568.13	ENSMUST00000085585.12	2944	11	0	0	0	0	multi-exon	FALSE	canonical	3	572	junction_4	54.3963234051714	380	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTAACTATTTTGGTT	NA	False	NA	-11	True	AATAAA	-33	NA	34089112	34044070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_34045384_34047350_34047408_34050710_34050943_34052814_34052987_34053089_34053273_34056858_34056922_34057190_34057368_34065039_34065163_34070479_34070610_34074653_34074818_34088782
transcript_82519.known	chr7	-	2372	4	FSM	ENSMUSG00000060402.9	ENSMUST00000078686.8	2372	4	0	0	0	0	multi-exon	TRUE	canonical	1	5	junction_3	4.02768199119819	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTTCCAGCTTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	34512111	34373892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_34375670_34376059_34376098_34447486_34447703_34511770
transcript_82520.known	chr7	+	1881	15	FSM	ENSMUSG00000063931.15	ENSMUST00000075068.14	1881	15	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_1	31.3925930429327	599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCTGCCCATCTTCCTC	NA	False	NA	14	True	AATAAA	-19	NA	34611803	34744133	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_34611880_34620753_34620938_34623805_34623934_34634106_34634171_34642063_34642112_34645011_34645074_34653982_34654028_34668929_34669006_34671081_34671129_34720389_34720459_34721117_34721196_34730767_34730917_34740095_34740281_34743114_34743307_34743655
transcript_82531.nnic	chr7	+	1374	9	NNC	ENSMUSG00000063931.15	novel	705	6	NA	NA	-134	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	118.290954852854	152	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTTCTGCCCATCTTCCT	8586	False	NA	13	True	AATAAA	-18	NA	34668573	34744132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_34668675_34668929_34669006_34671081_34671129_34720389_34720459_34721117_34721196_34730767_34730917_34740095_34740281_34743114_34743307_34743655
transcript_82532.known	chr7	+	408	3	FSM	ENSMUSG00000063931.15	ENSMUST00000162509.2	408	3	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	181.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTTTTTGTTTGTTTGTT	8947	False	NA	NA	False	TTTAAA	-30	NA	34668934	34680219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_34669006_34671081_34671129_34679929
transcript_82533.known	chr7	-	4709	2	FSM	ENSMUSG00000056216.10	ENSMUST00000130491.3	4709	2	0	0	0	0	multi-exon	FALSE	canonical	3	425	junction_1	0	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTTCTTATCACGTGTCT	NA	False	NA	NA	False	AATAAA	-18	NA	34755998	34745846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_34750358_34755800
transcript_82534.known	chr7	-	399	2	FSM	ENSMUSG00000056216.10	ENSMUST00000206505.2	399	2	0	0	0	0	multi-exon	FALSE	canonical	2	26	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGTGTTGGCAAAGGAAC	NA	False	NA	NA	False	NA	NA	NA	34755408	34750289	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_34750358_34755077
transcript_82537.known	chr7	-	3065	20	FSM	ENSMUSG00000063808.15	ENSMUST00000079693.12	3065	20	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_17	13.3084023611853	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCTTCTTGATTTCTTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	35017865	34975960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_34976237_34980756_34980906_34982995_34983094_34984140_34984249_34986547_34986762_34987941_34988106_34988464_34988602_34991150_34991279_34993079_34993259_34994679_34994977_34996908_34997114_34998645_34998726_35001002_35001151_35002653_35002897_35005354_35005414_35006613_35006712_35007603_35007765_35008725_35008812_35009864_35010000_35017765
transcript_82539.known	chr7	-	2584	18	FSM	ENSMUSG00000063808.15	ENSMUST00000131143.2	2584	18	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_15	38.6016834529004	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAGACACAAGAGCAA	NA	False	NA	9	True	AAAAAG	-18	NA	35017865	34983043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_34983094_34984140_34984249_34986547_34986762_34987941_34988106_34988464_34988602_34991150_34991279_34993079_34993259_34994679_34994977_34996908_34997114_34998645_34998726_35001002_35001151_35002653_35002897_35005354_35005414_35006613_35006712_35007603_35007757_35008725_35008812_35009864_35010000_35017765
transcript_8254.known	chr10	+	598	7	FSM	ENSMUSG00000069565.13	ENSMUST00000156935.8	598	7	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	392.073972612312	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGTGTGTAGTTGTAG	NA	False	NA	NA	False	NA	NA	NA	80097319	80116839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80097410_80109840_80109882_80110281_80110449_80110637_80110704_80113408_80113517_80114066_80114116_80116762
transcript_82540.known	chr7	+	3046	16	FSM	ENSMUSG00000030494.14	ENSMUST00000085556.4	3046	16	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_15	29.2524642836577	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTTTCTTTTTTCTTTTG	NA	False	NA	22	True	AATAAA	-22	NA	35033754	35091710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_35033837_35053156_35053273_35060404_35060534_35063041_35063118_35070133_35070212_35070539_35070665_35071729_35071897_35075584_35075773_35076398_35076556_35078989_35079110_35080761_35080957_35083393_35083471_35084062_35084210_35084751_35084908_35090179_35090736_35091033
transcript_82541.known	chr7	+	3508	15	FSM	ENSMUSG00000030494.14	ENSMUST00000032705.13	3508	15	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_1	11.3992928531124	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTCTTTTGCTTT	NA	False	NA	26	True	AATAAA	-26	NA	35033594	35091714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_35033837_35053156_35053273_35060404_35060534_35063041_35063118_35070133_35070212_35070539_35070665_35071729_35071897_35075584_35075773_35076398_35076556_35078989_35079110_35080761_35080957_35083393_35083471_35084062_35084210_35084751_35084908_35090179
transcript_82550.nnic	chr7	-	1429	5	NNC	ENSMUSG00000030493.14	novel	831	5	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_4	61.4913611818766	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAAAGAAAAATTA	NA	False	NA	NA	False	AATAAA	-4	NA	35096256	35091729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_35092517_35094399_35094553_35094661_35094802_35095637_35095841_35096110
transcript_82552.known	chr7	-	1857	4	FSM	ENSMUSG00000030493.14	ENSMUST00000032704.12	1857	4	0	0	0	0	multi-exon	TRUE	canonical	3	143	junction_2	4.92160768674447	518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGATCCACAGGCTATAT	NA	False	NA	NA	False	AATAGA	-24	NA	35096261	35091576	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_35092517_35094399_35094553_35094661_35094802_35095637
transcript_82557.known	chr7	-	1690	3	FSM	ENSMUSG00000030493.14	ENSMUST00000141001.2	1690	3	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_1	3.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAAAGAAAAATTA	NA	False	NA	NA	False	AATAAA	-4	NA	35096138	35091729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_35092517_35094399_35094802_35095637
transcript_82559.known	chr7	+	2610	19	FSM	ENSMUSG00000023072.15	ENSMUST00000079414.12	2610	19	0	0	0	0	multi-exon	FALSE	canonical	2	65	junction_12	24.7032386540712	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGCATGTTTATTTCAG	NA	False	NA	10	True	AATAAA	-20	NA	35096479	35138114	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005_35109118_35113568_35113598_35115841_35115885_35117066_35117286_35117643_35117787_35119671_35119723_35120299_35120384_35122724_35122829_35124081_35124198_35127024_35127206_35127624_35127793_35128581_35128724_35131942_35132033_35134898_35135069_35137752
transcript_82560.nic	chr7	+	2540	17	ISM	ENSMUSG00000023072.15	ENSMUST00000141704.8	2825	20	2	8239	2	-2126	5prime_fragment	FALSE	canonical	2	50	junction_16	33.5018073206506	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCGTGATATTGTCTGT	NA	False	NA	6	True	AATAAA	-12	NA	35096461	35129873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005_35109118_35113568_35113598_35115841_35115885_35117066_35117286_35117643_35117787_35119671_35119723_35120299_35120384_35122724_35122829_35124081_35124198_35127024_35127206_35127624_35127793_35128581_35128724_35129339
transcript_82561.known	chr7	+	2825	20	FSM	ENSMUSG00000023072.15	ENSMUST00000141704.8	2825	20	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_17	42.1773724634719	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTTGCATGTTTATTTC	NA	False	NA	8	True	AATAAA	-18	NA	35096459	35138112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005_35109118_35113568_35113598_35115841_35115885_35117066_35117286_35117643_35117787_35119671_35119723_35120299_35120384_35122724_35122829_35124081_35124198_35127024_35127206_35127624_35127793_35128581_35128724_35129339_35129537_35131942_35132033_35134898_35135069_35137752
transcript_82562.nnic	chr7	+	1421	12	NNC	ENSMUSG00000023072.15	novel	2610	19	NA	NA	2	959	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_11	38.1133585396715	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGGTCATCCCACGTTTT	NA	False	NA	NA	False	NA	NA	NA	35096461	35121618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005_35109118_35113568_35113598_35115841_35115885_35117066_35117286_35117643_35117787_35119671_35119723_35120299_35120384_35121492
transcript_82563.nnic	chr7	+	1492	12	NNC	ENSMUSG00000023072.15	novel	2610	19	NA	NA	2	959	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_11	40.0712175924172	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGGTCATCCCACGTTTT	NA	False	NA	NA	False	NA	NA	NA	35096461	35121618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005_35109118_35113568_35113598_35115841_35115885_35117066_35117286_35117643_35117787_35119671_35119723_35120299_35120455_35121492
transcript_82570.nnic	chr7	+	853	4	NNC	ENSMUSG00000023072.15	novel	2825	20	NA	NA	3720	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	58.6590904198905	134	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTTGCATGTTTATTTC	NA	False	NA	8	True	AATAAA	-18	NA	35131466	35138112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_35131700_35131942_35132033_35134898_35135069_35137752
transcript_82580.known	chr7	-	1412	11	FSM	ENSMUSG00000030491.17	ENSMUST00000205407.2	1412	11	0	0	0	0	multi-exon	FALSE	canonical	2	20	junction_10	140.166365437647	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTCTCTTAAAATATTT	NA	False	NA	-10	True	AATAAA	-36	NA	35237118	35193033	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_35193363_35193695_35193757_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35236938
transcript_82582.known	chr7	-	1620	12	FSM	ENSMUSG00000030491.17	ENSMUST00000032701.14	1620	12	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_6	48.0311538018523	1122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAAAATTCTCTTAAAATA	NA	False	NA	-13	True	AATAAA	-33	NA	35237170	35193036	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_35193363_35193695_35193757_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35228537_35228697_35236938
transcript_82583.known	chr7	-	733	3	FSM	ENSMUSG00000034875.6	ENSMUST00000142930.2	733	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	165.5	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCACTTGCTCCCTGGTTGG	NA	False	NA	NA	False	NA	NA	NA	35254619	35246945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_35247549_35250878_35250968_35254578
transcript_82584.known	chr7	-	2298	3	FSM	ENSMUSG00000034875.6	ENSMUST00000040962.6	2298	3	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_1	2	1549	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTATTTTTTATTCTACT	NA	False	NA	2	True	ATTAAA	-29	NA	35255729	35246609	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_35247549_35250878_35251087_35254578
transcript_82594.known	chr7	+	4284	29	FSM	ENSMUSG00000034867.17	ENSMUST00000040844.16	4284	29	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_17	26.9819242214835	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGTGCCATTTTTGTG	NA	False	NA	23	True	AGTAAA	-15	NA	35285668	35338651	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_35285795_35291176_35291308_35299739_35299851_35300914_35301072_35301852_35302008_35302979_35303040_35303123_35303178_35303260_35303327_35303637_35303715_35305207_35305330_35306525_35306605_35307745_35307879_35311887_35311981_35313879_35314008_35314452_35314536_35315272_35315389_35316271_35316365_35318739_35318938_35319782_35319843_35319967_35320088_35321729_35321775_35325071_35325192_35326828_35327027_35327851_35327972_35330567_35330730_35332361_35332474_35335655_35335735_35335954_35336028_35337438
transcript_82596.known	chr7	+	1926	12	FSM	ENSMUSG00000034867.17	ENSMUST00000186245.7	1926	12	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_4	23.6388110621019	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAGTTCAGCCTGGGCTA	NA	False	NA	NA	False	NA	NA	NA	35285674	35308539	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_35285795_35291176_35291308_35299739_35299851_35300914_35301072_35301852_35302008_35302979_35303040_35303123_35303178_35303260_35303327_35303637_35303715_35305207_35305330_35306525_35306605_35307745
transcript_82598.known	chr7	+	405	3	FSM	ENSMUSG00000034867.17	ENSMUST00000188906.7	405	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	153	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTACCGAGGGAGGGCTG	NA	False	NA	NA	False	NA	NA	NA	35285674	35301068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_35285795_35291176_35291308_35300914
transcript_82601.known	chr7	-	767	6	FSM	ENSMUSG00000030417.16	ENSMUST00000120714.2	767	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	742.103227320836	604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGGGTGTTTCAGAATCA	NA	False	NA	NA	False	AATAAA	-22	NA	35346634	35341436	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_35341611_35342039_35342112_35343048_35343141_35343775_35343838_35345568_35345607_35346305
transcript_82604.known	chr7	-	684	6	FSM	ENSMUSG00000030417.16	ENSMUST00000118501.8	684	6	0	0	0	0	multi-exon	FALSE	canonical	3	1740	junction_2	86.0883267348135	10599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAGATCTGCATTTTG	NA	False	NA	NA	False	NA	NA	NA	35346946	35341406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_35341611_35342039_35342112_35343048_35343141_35343775_35343838_35345568_35345607_35346730
transcript_82605.known	chr7	-	8006	19	FSM	ENSMUSG00000043671.15	ENSMUST00000051377.15	8006	19	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_12	3.52591814502721	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGGTTGTGCCTACATGT	NA	False	NA	NA	False	TATAAA	-30	NA	35453879	35384589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_35390368_35392201_35392361_35394706_35394840_35402913_35402997_35406805_35406863_35407484_35407597_35407959_35408083_35411285_35411445_35411569_35411644_35413550_35413653_35416011_35416144_35420969_35421105_35422131_35422256_35424715_35424862_35426714_35426837_35429110_35429202_35449164_35449299_35452039_35452182_35453679
transcript_82607.known	chr7	-	944	6	FSM	ENSMUSG00000044452.11	ENSMUST00000187282.3	944	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	23.3957261054236	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGCCAACTAGCTGGGAG	NA	False	NA	NA	False	NA	NA	NA	35502392	35475398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_35475753_35475862_35475998_35487142_35487258_35491072_35491188_35500862_35500954_35502258
transcript_82622.nnic	chr7	-	563	2	Antisense	novelGene_ENSMUSG00000066543.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	412	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGGAATTCTTGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	35818299	35817661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr7_-_35817972_35818046
transcript_82625.nnic	chr7	-	579	2	Antisense	novelGene_ENSMUSG00000066543.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	436	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGGAATTCTTGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	35818296	35817661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr7_-_35817991_35818046
transcript_82627.nnic	chr7	-	569	2	Antisense	novelGene_ENSMUSG00000066543.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	427	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGGAATTCTTGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	35818298	35817661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr7_-_35817991_35818058
transcript_82629.nnic	chr7	-	400	2	Antisense	novelGene_ENSMUSG00000066543.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	214	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGGAATTCTTGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	35818301	35817661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr7_-_35817991_35818230
transcript_8263.known	chr10	+	500	4	FSM	ENSMUSG00000063457.15	ENSMUST00000068408.14	500	4	0	0	0	0	multi-exon	FALSE	canonical	3	5732	junction_1	1157.99510649513	33222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGGGTTTTTGTTTTTTT	6342	False	NA	30	True	AATAAA	-21	NA	80128286	80129948	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80128318_80128608_80128695_80129475_80129711_80129800
transcript_82631.nnic	chr7	+	494	2	Genic_Genomic	ENSMUSG00000066543.9	novel	555	1	NA	NA	-37	46	multi-exon	FALSE	canonical	0	0	junction_1	0	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGAATTCCTTTCAA	NA	False	NA	NA	False	AATAAA	-30	NA	35817661	35818299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr7_+_35818053_35818196
transcript_82632.nnic	chr7	-	589	2	Antisense	novelGene_ENSMUSG00000066543.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	372	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGGAATTCTTGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	35818300	35817661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr7_-_35818066_35818115
transcript_82637.known	chr7	+	555	1	FSM	ENSMUSG00000066543.9	ENSMUST00000119541.2	555	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	161142	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTCAGCATAAAATAAAGGC	NA	False	NA	NA	False	AAGAAA	-34	NA	35817698	35818253	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_35817700_35818300
transcript_8264.known	chr10	+	572	3	FSM	ENSMUSG00000063457.15	ENSMUST00000062674.7	572	3	0	0	0	0	multi-exon	FALSE	canonical	3	7729	junction_2	373	756	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATAAAGACTGGTTTTGGT	6534	False	NA	3	True	NA	NA	NA	80128478	80129921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80128695_80129475_80129711_80129800
transcript_82641.nnic	chr7	+	1654	3	Antisense	novelGene_ENSMUSG00000043456.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	4	15	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTCAACTTCTATTGTTCT	NA	False	NA	NA	False	ATTAAA	-18	NA	37179202	37181236	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr7_+_37179284_37179528_37179678_37179812
transcript_82646.nnic	chr7	-	1862	12	NNC	ENSMUSG00000002068.17	novel	2000	12	NA	NA	285	0	at_least_one_novel_splicesite	FALSE	canonical	2	29	junction_11	244.136054738215	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTCTTAACTCTGT	NA	False	NA	-12	True	AATAAA	-19	NA	37806642	37797408	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_37798063_37798416_37798575_37798671_37798784_37798892_37799028_37799213_37799310_37799979_37800127_37802210_37802347_37802470_37802620_37805703_37805773_37806020_37806109_37806211_37806255_37806567
transcript_82647.known	chr7	-	2000	12	FSM	ENSMUSG00000002068.17	ENSMUST00000108023.10	2000	12	0	0	0	0	multi-exon	FALSE	canonical	2	563	junction_4	98.4049652714874	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTCTTAACTCTGT	NA	False	NA	-12	True	AATAAA	-19	NA	37806959	37797408	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_37798063_37798416_37798575_37798671_37798784_37798892_37799028_37799213_37799310_37799979_37800127_37802210_37802347_37802470_37802620_37805703_37805773_37806020_37806109_37806211_37806255_37806746
transcript_82648.nnic	chr7	-	1885	12	NNC	ENSMUSG00000002068.17	novel	2000	12	NA	NA	-972	0	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_11	248.089093567427	73	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTCTTAACTCTGT	NA	False	NA	-12	True	AATAAA	-19	NA	37807931	37797408	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_37798063_37798416_37798575_37798671_37798784_37798892_37799028_37799213_37799310_37799979_37800127_37802210_37802347_37802470_37802620_37805703_37805773_37806020_37806109_37806211_37806255_37807833
transcript_82649.known	chr7	+	3282	3	FSM	ENSMUSG00000054676.18	ENSMUST00000178876.10	3282	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	1.5	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCACTCTCTGTGTATTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	37883077	37896992	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_37883325_37888030_37888202_37894128
transcript_8265.known	chr10	-	1649	2	FSM	ENSMUSG00000020133.9	ENSMUST00000020341.9	1649	2	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_1	0	681	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGTGGCTCGCTTTATTA	8717	False	NA	NA	False	GATAAA	-19	NA	80156371	80154087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80155382_80156016
transcript_82651.nnic	chr7	+	731	6	NNC	ENSMUSG00000030424.16	novel	2480	6	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3.8262252939418	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTTGAGTATGTTTA	NA	False	NA	NA	False	NA	NA	NA	39098911	39126837	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_39099078_39109239_39109367_39116765_39116859_39120820_39120931_39122285_39122418_39126734
transcript_82656.nnic	chr7	+	490	4	NIC	ENSMUSG00000030424.16	novel	2480	6	NA	NA	-30	1	combination_of_known_splicesites	TRUE	canonical	0	0	junction_3	3.85861230093008	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTGAGTATGTTTAG	NA	False	NA	NA	False	NA	NA	NA	39098911	39126838	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_39099078_39109239_39109367_39116765_39116859_39126734
transcript_82658.nnic	chr7	+	800	6	NNC	ENSMUSG00000100490.2	novel	1290	3	NA	NA	-2077	-2152	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	6.91664658631623	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGTTTGCTTGGTGAAAT	NA	False	NA	NA	False	AATAAA	-23	NA	39136784	39146073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_39136985_39138848_39138976_39139461_39139545_39143154_39143248_39145691_39145802_39145886
transcript_8266.known	chr10	-	1168	3	FSM	ENSMUSG00000020131.15	ENSMUST00000130521.2	1168	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGATGTCGAGTTTATGG	6127	False	NA	NA	False	AATAAA	-9	NA	80158961	80157120	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80157756_80157914_80158044_80158557
transcript_82662.nnic	chr7	+	717	5	NNC	ENSMUSG00000100490.2	novel	1290	3	NA	NA	-2077	-2152	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_4	5.8309518948453	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGTTTGCTTGGTGAAAT	NA	False	NA	NA	False	AATAAA	-23	NA	39136784	39146073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_39136985_39138848_39138976_39143154_39143248_39145691_39145802_39145886
transcript_82664.nnic	chr7	+	802	4	NNC	ENSMUSG00000100490.2	novel	1290	3	NA	NA	-2077	-2152	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	0.942809041582063	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGTTTGCTTGGTGAAAT	NA	False	NA	NA	False	AATAAA	-23	NA	39136784	39146073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_39136985_39138848_39138976_39143154_39143248_39145691
transcript_82665.known	chr7	+	5969	4	FSM	ENSMUSG00000068959.7	ENSMUST00000108015.4	5969	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	2.94392028877595	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTTTAAGTAGATTTCT	NA	False	NA	NA	False	NA	NA	NA	39167189	39189844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_39167289_39183216_39183344_39183538_39183600_39184162
transcript_82667.known	chr7	+	395	1	FSM	ENSMUSG00000056836.9	ENSMUST00000154478.3	395	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12243	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATCACATGAAAGACTAAAAA	NA	False	NA	NA	False	AATAAA	-1	NA	39840360	39840755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_39840400_39840800
transcript_82669.known	chr7	-	2071	5	FSM	ENSMUSG00000056383.11	ENSMUST00000205338.2	2071	5	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_4	16.2845785944863	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	41042803	41023213	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_41024799_41025914_41025973_41026169_41026297_41037531_41037680_41042650
transcript_8267.known	chr10	+	2015	6	FSM	ENSMUSG00000035504.17	ENSMUST00000186864.7	2015	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	273.806939283868	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGAGTGTGTCCGCTAAGCT	7219	False	NA	17	True	AATAAA	-18	NA	80165978	80172274	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80166180_80169336_80169431_80169522_80169662_80169799_80169969_80170546_80170628_80170943
transcript_82673.known	chr7	-	2671	4	FSM	ENSMUSG00000056383.11	ENSMUST00000071804.10	2671	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	27.3901847788988	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTTTTTCTGACTTTT	NA	False	NA	-14	True	AATAAA	-25	NA	41042684	41022346	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_41024799_41025914_41025973_41026169_41026297_41042650
transcript_82675.known	chr7	-	1701	5	FSM	ENSMUSG00000056383.11	ENSMUST00000206801.2	1701	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	36.698092593485	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTTTTTCTGACTTTT	NA	False	NA	-14	True	AATAAA	-25	NA	41042736	41022346	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_41023469_41024490_41024799_41025914_41025973_41026169_41026297_41042650
transcript_82677.known	chr7	+	906	2	FSM	ENSMUSG00000091864.2	ENSMUST00000170929.2	906	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAGTGGAACTGTGCTG	NA	False	NA	NA	False	AATAAA	-9	NA	41043121	41046871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_41043445_41046288
transcript_8268.known	chr10	+	2127	5	FSM	ENSMUSG00000035504.17	ENSMUST00000105357.2	2127	5	0	0	0	0	multi-exon	FALSE	canonical	3	489	junction_4	47.9921868641136	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGTGTGTCCGCTAAGCTG	7027	False	NA	18	True	AATAAA	-19	NA	80165786	80172275	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80166180_80169336_80169431_80169522_80169662_80169799_80169969_80170943
transcript_82681.known	chr7	-	3411	4	FSM	ENSMUSG00000074166.8	ENSMUST00000098509.5	3411	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	6.97614984548545	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTGCTTTTTTTCTGTC	NA	False	NA	0	True	AATAAA	-21	NA	41149314	41128297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_41130924_41131989_41132051_41132256_41132384_41148717
transcript_82682.known	chr7	-	1337	2	FSM	ENSMUSG00000074166.8	ENSMUST00000205995.2	1337	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTGATGGTGCTGTTCT	NA	False	NA	NA	False	NA	NA	NA	41148832	41139270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_41140493_41148717
transcript_82687.known	chr7	-	1430	4	FSM	ENSMUSG00000090744.8	ENSMUST00000073410.12	1430	4	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_3	48.9285192909003	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAATCACTGTGGTGAAG	NA	False	NA	NA	False	NA	NA	NA	41210253	41195097	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_41196224_41197139_41197201_41197407_41197535_41210137
transcript_82692.known	chr7	+	4004	6	FSM	ENSMUSG00000091474.3	ENSMUST00000163475.3	4004	6	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	46.5403051128804	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGGGGTAATGAATTTCT	NA	False	NA	45	True	AATAAA	-27	NA	41248684	41277957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_41248825_41261099_41261350_41261794_41261922_41262579_41262676_41274146_41274257_41274676
transcript_82696.known	chr7	+	594	5	FSM	ENSMUSG00000091474.3	ENSMUST00000205433.2	594	5	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	59.0735770035978	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAATGAAGAACCCTCCAT	NA	False	NA	NA	False	NA	NA	NA	41248747	41262620	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_41248825_41252859_41252959_41261099_41261350_41261794_41261922_41262579
transcript_82698.known	chr7	+	813	6	FSM	ENSMUSG00000074165.11	ENSMUST00000131180.8	813	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	17.04582060213	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTGTTACAAGTATTCC	NA	False	NA	NA	False	TATAAA	-28	NA	41282979	41297782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_41283119_41284103_41284324_41292756_41292857_41296914_41297042_41297242_41297304_41297616
transcript_82699.known	chr7	+	1169	5	FSM	ENSMUSG00000074165.11	ENSMUST00000140964.8	1169	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	14.5150783669948	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAATGTGGTAAGTCCTT	NA	False	NA	NA	False	NA	NA	NA	41282981	41298421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_41283119_41284103_41284135_41296906_41297042_41297242_41297304_41297616
transcript_82703.known	chr7	+	3058	4	FSM	ENSMUSG00000074165.11	ENSMUST00000045720.14	3058	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	14.6363322667334	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAAGAATATGTTTTCATT	NA	False	NA	53	True	NA	NA	NA	41282987	41300355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_41283119_41296914_41297042_41297242_41297304_41297616
transcript_82704.known	chr7	+	3177	6	FSM	ENSMUSG00000074165.11	ENSMUST00000100275.10	3177	6	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	15.7733953225043	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATATGTGGTGAAAATTTT	NA	False	NA	0	True	TATAAA	-13	NA	41282954	41300302	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_41283119_41284103_41284135_41292756_41292857_41296906_41297042_41297242_41297304_41297616
transcript_82705.known	chr7	+	3775	6	FSM	ENSMUSG00000074165.11	ENSMUST00000098508.9	3775	6	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	16.2677595261302	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTGTTCACTTTGCTCT	NA	False	NA	NA	False	NA	NA	NA	41283000	41300954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_41283119_41284103_41284135_41292756_41292857_41296914_41297042_41297242_41297304_41297616
transcript_82709.nnic	chr7	-	3564	9	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	-20	74727	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	126.241831418908	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTACGGTCTCAGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	42155184	42048082	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_42048406_42048513_42048567_42123694_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139462_42139701_42150781_42150850_42155033
transcript_82713.known	chr7	-	4069	7	FSM	ENSMUSG00000092416.3	ENSMUST00000174407.3	4069	7	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_4	65.4285021140549	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTACTTACTGCTGTCTT	NA	False	NA	-15	True	AATAAA	-15	NA	42155150	42122809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139432_42139701_42150781_42150850_42155033
transcript_82719.nnic	chr7	-	919	7	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	-20	-130	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_4	78.7541886011292	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTTTGCACTGCATAATAA	NA	False	NA	NA	False	AATAAA	-13	NA	42155184	42125963	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139462_42139701_42150781_42150850_42155033
transcript_8272.known	chr10	-	989	8	FSM	ENSMUSG00000043822.19	ENSMUST00000105352.2	989	8	0	0	0	0	multi-exon	TRUE	canonical	2	6	junction_5	4.16986271980755	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGCCTCCCCTCAGTA	NA	False	NA	NA	False	AATAGA	-16	NA	80184246	80178572	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80178855_80179432_80179561_80180666_80180776_80180876_80180938_80181155_80181248_80181346_80181538_80183390_80183460_80184189
transcript_82727.nic	chr7	-	581	3	ISM	ENSMUSG00000092416.3	ENSMUST00000174407.3	4069	7	-34	16529	-20	-1428	5prime_fragment	FALSE	canonical	3	217	junction_2	18.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACTTGTTTCTCCGTCTC	NA	False	NA	NA	False	TTTAAA	-19	NA	42155184	42139338	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_42139701_42150781_42150850_42155033
transcript_82731.nnic	chr7	+	613	4	Antisense	novelGene_ENSMUSG00000108491.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	9.7410927974683	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCGGCTGCAGACTGTTA	NA	False	NA	NA	False	NA	NA	NA	42155247	42158298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr7_+_42155413_42155960_42156218_42157017_42157122_42158211
transcript_82733.nnic	chr7	+	413	3	Antisense	novelGene_ENSMUSG00000108491.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_1	5.5	76	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCGGCTGCAGACTGTTA	NA	False	NA	NA	False	NA	NA	NA	42155190	42158298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr7_+_42155413_42157017_42157122_42158211
transcript_82736.nnic	chr7	-	583	3	NNC	ENSMUSG00000108491.2	novel	417	3	NA	NA	460	1759	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGGTAGCGCGCATGCG	NA	False	NA	NA	False	NA	NA	NA	42158298	42155264	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_42155657_42157017_42157122_42158211
transcript_8274.known	chr10	+	2100	15	FSM	ENSMUSG00000035486.15	ENSMUST00000105351.2	2100	15	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_11	2.25876975726313	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGCTTCCTTTTTGTTT	NA	False	NA	14	True	AATAAA	-20	NA	80192292	80201323	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80192502_80193817_80193926_80194075_80194193_80194620_80194751_80195075_80195164_80195243_80195340_80195988_80196188_80196273_80196401_80196519_80196597_80196955_80197029_80197237_80197316_80198842_80199000_80199849_80199980_80200056_80200168_80200923
transcript_82740.known	chr7	-	1425	4	FSM	ENSMUSG00000092335.2	ENSMUST00000173283.2	1425	4	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_3	19.6129209111409	294	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATATAATCAGTTTGATGA	NA	False	NA	NA	False	NA	NA	NA	42241971	42229206	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_42230333_42232070_42232132_42232329_42232457_42241860
transcript_82742.known	chr7	-	3148	4	FSM	ENSMUSG00000069727.6	ENSMUST00000107992.2	3148	4	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_3	55.1784982277215	1911	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCGTGTCCTGTGTTTA	NA	False	NA	NA	False	NA	NA	NA	42342142	42309528	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_42312421_42314181_42314243_42314441_42314569_42342074
transcript_82744.nnic	chr7	-	3070	3	NIC	ENSMUSG00000069727.6	novel	3148	4	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	3	30	junction_2	158	1823	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCGTGTCCTGTGTTTA	NA	False	NA	NA	False	NA	NA	NA	42342191	42309528	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_42312421_42314181_42314243_42342074
transcript_82747.known	chr7	-	4073	4	FSM	ENSMUSG00000092225.2	ENSMUST00000174558.2	4073	4	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_3	34.9888871246603	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATTTTCATTAGTAATTT	NA	False	NA	-14	True	AATAAA	-14	NA	42516658	42466252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_42470028_42471782_42471844_42472041_42472168_42516547
transcript_82749.known	chr7	+	378	4	FSM	ENSMUSG00000107181.2	ENSMUST00000201257.2	378	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	50.8002624665136	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTCCTAGAACTATTTAT	NA	False	NA	NA	False	NA	NA	NA	42727474	42745843	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_42727598_42741712_42741840_42742038_42742100_42745776
transcript_82759.known	chr7	+	3112	4	FSM	ENSMUSG00000064194.11	ENSMUST00000202535.4	3112	4	0	0	0	0	multi-exon	FALSE	canonical	3	311	junction_1	65.2226954364813	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATATTTTTAATTATG	NA	False	NA	NA	False	AATGAA	-10	NA	42827011	42841533	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_42827128_42836593_42836721_42836916_42836978_42838725
transcript_8276.known	chr10	-	1662	7	FSM	ENSMUSG00000035478.15	ENSMUST00000092295.10	1662	7	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_6	355.847657791302	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80235384	80228372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80228853_80228928_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80234955
transcript_82760.known	chr7	+	578	5	FSM	ENSMUSG00000064194.11	ENSMUST00000200973.4	578	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	196.935268552893	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACCCAGCTATCTTCGAA	NA	False	NA	NA	False	NA	NA	NA	42827046	42838926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_42827128_42836593_42836721_42836916_42836978_42838466_42838575_42838725
transcript_8277.known	chr10	-	1566	7	FSM	ENSMUSG00000035478.15	ENSMUST00000105349.8	1566	7	0	0	0	0	multi-exon	FALSE	canonical	3	918	junction_6	141.458376288653	496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80235384	80228372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80228853_80228928_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80235051
transcript_82774.nnic	chr7	+	1880	3	NNC	ENSMUSG00000074887.5	novel	1386	3	NA	NA	-40	15204	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	1	82	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTTCACTTCTGATTT	9958	False	NA	NA	False	NA	NA	NA	42863422	42891470	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_42863572_42884606_42884794_42889926
transcript_82776.known	chr7	+	1492	5	FSM	ENSMUSG00000074887.5	ENSMUST00000205748.2	1492	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	99.780697031039	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTCAGCTCAAAGTCTTC	9998	False	NA	NA	False	NA	NA	NA	42863462	42876266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_42863572_42870265_42870330_42872998_42873126_42873324_42873386_42875135
transcript_82777.known	chr7	+	1428	4	FSM	ENSMUSG00000074887.5	ENSMUST00000206405.2	1428	4	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_3	24.5356882927706	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTCAGCTCAAAGTCTTC	9998	False	NA	NA	False	NA	NA	NA	42863462	42876266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_42863572_42872998_42873126_42873324_42873386_42875135
transcript_82779.known	chr7	-	4184	5	FSM	ENSMUSG00000012640.17	ENSMUST00000107986.9	4184	5	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_4	14.2894191624432	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACTGTTCATATTGCTTT	NA	False	NA	0	True	AATAAA	-16	NA	42962679	42945946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_42949601_42950593_42950690_42951034_42951162_42960454_42960610_42962527
transcript_82781.known	chr7	+	558	2	FSM	ENSMUSG00000118553.2	ENSMUST00000239023.2	558	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCCTGAAGAGCATCCAGT	NA	False	NA	NA	False	NA	NA	NA	43077109	43078256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43077145_43077733
transcript_82782.known	chr7	+	881	4	FSM	ENSMUSG00000004612.10	ENSMUST00000070518.4	881	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTATTGTTCCAAGATCAG	8437	False	NA	NA	False	AATAAA	-16	NA	43086496	43087673	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43086885_43086960_43087108_43087198_43087334_43087462
transcript_82792.known	chr7	+	893	6	FSM	ENSMUSG00000004610.5	ENSMUST00000004729.5	893	6	0	0	0	0	multi-exon	FALSE	canonical	3	1745	junction_1	117.194539121923	20722	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGGATGTCCTTGTTT	1908	False	NA	52	True	AATAAA	-35	NA	43093506	43107224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43093629_43101764_43101924_43102222_43102382_43103941_43104005_43105902_43106062_43106993
transcript_82793.known	chr7	+	701	6	FSM	ENSMUSG00000004610.5	ENSMUST00000206411.2	701	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	783.507855735984	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACTGCCTCTTTCCTCAT	1975	False	NA	33	True	AATAAA	-16	NA	43093573	43107205	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43093629_43101764_43101924_43102222_43102382_43103941_43104005_43105902_43106062_43107099
transcript_82794.known	chr7	+	551	5	FSM	ENSMUSG00000004610.5	ENSMUST00000206196.2	551	5	0	0	0	0	multi-exon	FALSE	canonical	3	1745	junction_1	127.987059892788	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTGTGGTGACTGCTGACC	1955	False	NA	NA	False	NA	NA	NA	43093553	43105997	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43093629_43101764_43101924_43102222_43102382_43103941_43104005_43105902
transcript_82795.known	chr7	+	409	2	FSM	ENSMUSG00000004610.5	ENSMUST00000143096.2	409	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCACTGCCTCTTTCCTCA	NA	False	NA	32	True	AATAAA	-15	NA	43105924	43107204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43106062_43106932
transcript_8280.known	chr10	-	1222	7	FSM	ENSMUSG00000035478.15	ENSMUST00000105348.8	1222	7	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_5	422.225617676406	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACACTGAAAGCAGATGAGC	NA	False	NA	NA	False	NA	NA	NA	80235256	80228672	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80228853_80228928_80229115_80229726_80229905_80230399_80230491_80230897_80231120_80231269_80231430_80235051
transcript_82803.known	chr7	-	457	5	FSM	ENSMUSG00000108695.2	ENSMUST00000205521.2	457	5	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_2	1.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCTCACTAAGCCCTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	43168394	43160591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_43160731_43164995_43165102_43165734_43165829_43166203_43166292_43168364
transcript_82804.known	chr7	+	4494	4	FSM	ENSMUSG00000030469.11	ENSMUST00000058104.8	4494	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	1.24721912892465	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCATTGTTTTCTCATCC	7267	False	NA	NA	False	NA	NA	NA	43229033	43242659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43229191_43233491_43233721_43235777_43235905_43238678
transcript_82808.nic	chr7	+	2428	5	NIC	ENSMUSG00000055102.16	novel	2362	5	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	25.6843824142221	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGCTTATTTTAAATACAC	2800	False	NA	7	True	AATAAA	-15	NA	43256556	43267640	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_43256742_43259209_43259403_43261406_43261534_43261970_43262064_43265810
transcript_82809.nic	chr7	+	2497	5	NIC	ENSMUSG00000055102.16	novel	2362	5	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	25.6843824142221	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCACATTCATCCATTGC	2800	False	NA	7	True	AATAAA	-21	NA	43256556	43267709	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_43256742_43259209_43259403_43261406_43261534_43261970_43262064_43265810
transcript_82810.known	chr7	+	2362	5	FSM	ENSMUSG00000055102.16	ENSMUST00000032661.14	2362	5	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	20.1416856295594	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCACATTCATCCATTGC	2892	False	NA	7	True	AATAAA	-21	NA	43256648	43267709	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43256699_43259209_43259403_43261406_43261534_43261970_43262064_43265810
transcript_82814.known	chr7	+	2156	4	FSM	ENSMUSG00000055102.16	ENSMUST00000120935.2	2156	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	36.4630711207319	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGCTTATTTTAAATACAC	2836	False	NA	7	True	AATAAA	-15	NA	43256592	43267640	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43256699_43261406_43261534_43261970_43262064_43265810
transcript_82823.nnic	chr7	-	777	5	Antisense	novelGene_ENSMUSG00000030472.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	1.73205080756888	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGATTACTTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	43296524	43276804	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr7_-_43276999_43278789_43279004_43280228_43280288_43280801_43280999_43296411
transcript_82827.known	chr7	+	2475	3	FSM	ENSMUSG00000038888.9	ENSMUST00000038332.9	2475	3	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	1	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTTTTTGGTCTGGTGTT	NA	False	NA	8	True	NA	NA	NA	43321439	43327722	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43321500_43324527_43325071_43325850
transcript_82829.known	chr7	+	1809	6	FSM	ENSMUSG00000054046.8	ENSMUST00000066834.8	1809	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	24.8161237907938	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTTGTTTTGTTTTGT	NA	False	NA	17	True	CATAAA	-21	NA	43361990	43376958	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43362129_43363215_43363307_43370390_43370581_43370691_43370961_43373178_43373316_43375974
transcript_8283.nic	chr10	-	1587	6	NIC	ENSMUSG00000035478.15	novel	1662	7	NA	NA	23	0	intron_retention	FALSE	canonical	3	303	junction_5	389.715485963799	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80235233	80228372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_-_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80234955
transcript_82832.nnic	chr7	+	1089	6	NNC	ENSMUSG00000054046.8	novel	718	3	NA	NA	-335	-780	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	15.8694675399019	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCCCTACTGTGCCTC	NA	False	NA	8	True	AATAAA	-21	NA	43362487	43376178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_43362686_43363215_43363307_43370390_43370581_43370691_43370961_43373178_43373316_43375974
transcript_82833.nnic	chr7	+	989	6	NNC	ENSMUSG00000054046.8	novel	718	3	NA	NA	-335	-780	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_3	23.4810561943027	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCCCTACTGTGCCTC	NA	False	NA	8	True	AATAAA	-21	NA	43362487	43376178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_43362686_43363215_43363307_43370390_43370581_43370791_43370961_43373178_43373316_43375974
transcript_82836.nnic	chr7	+	1013	5	NIC	ENSMUSG00000054046.8	novel	1809	6	NA	NA	-75	-780	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	27.4988636128841	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCCCTACTGTGCCTC	NA	False	NA	8	True	AATAAA	-21	NA	43361915	43376178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_43362129_43370390_43370581_43370691_43370961_43373178_43373316_43375974
transcript_82837.nnic	chr7	+	940	5	NNC	ENSMUSG00000054046.8	novel	1809	6	NA	NA	-67	-780	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	30.3891427980455	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCCCTACTGTGCCTC	NA	False	NA	8	True	AATAAA	-21	NA	43361923	43376178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_43362129_43370390_43370581_43370791_43370961_43373143_43373316_43375974
transcript_82838.nnic	chr7	+	922	5	NNC	ENSMUSG00000054046.8	novel	1809	6	NA	NA	-84	-780	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	31.5386667441729	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCCCTACTGTGCCTC	NA	False	NA	8	True	AATAAA	-21	NA	43361906	43376178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_43362129_43370390_43370581_43370791_43370961_43373178_43373316_43375974
transcript_8284.nic	chr10	-	1479	6	NIC	ENSMUSG00000035478.15	novel	1566	7	NA	NA	35	0	intron_retention	FALSE	canonical	3	918	junction_5	149.282818837266	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80235221	80228372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_-_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80235051
transcript_82840.nnic	chr7	+	871	5	NNC	ENSMUSG00000054046.8	novel	1809	6	NA	NA	-208	-780	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	28.314086600136	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCCCTACTGTGCCTC	NA	False	NA	8	True	AATAAA	-21	NA	43362614	43376178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_43362686_43370390_43370581_43370691_43370961_43373178_43373316_43375974
transcript_82841.nnic	chr7	+	849	5	NNC	ENSMUSG00000054046.8	novel	1809	6	NA	NA	-286	-780	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	32.1121083082379	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCCCTACTGTGCCTC	NA	False	NA	8	True	AATAAA	-21	NA	43362536	43376178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_43362686_43370390_43370581_43370791_43370961_43373178_43373316_43375974
transcript_82845.known	chr7	+	1312	6	FSM	ENSMUSG00000067616.12	ENSMUST00000080211.12	1312	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	3.00665927567458	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTCTGTTGAGTGTCAAC	NA	False	NA	NA	False	NA	NA	NA	43424027	43428687	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43424226_43425903_43425979_43426304_43426462_43426911_43427178_43427753_43427891_43428208
transcript_82846.nic	chr7	+	1359	6	NIC	ENSMUSG00000067616.12	novel	1312	6	NA	NA	-43	0	combination_of_known_junctions	TRUE	canonical	1	1	junction_4	3.31058907144937	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTCTGTTGAGTGTCAAC	NA	False	NA	NA	False	NA	NA	NA	43423984	43428687	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_43424226_43425903_43425979_43426304_43426466_43426911_43427178_43427753_43427891_43428208
transcript_82856.known	chr7	+	1373	6	FSM	ENSMUSG00000030693.11	ENSMUST00000014058.11	1373	6	0	0	0	0	multi-exon	FALSE	canonical	2	31	junction_4	14.5134420452214	171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCAATGTGTGTGCCTCT	355	False	NA	9	True	ATTAAA	-16	NA	43430458	43434834	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43430571_43430922_43431050_43432159_43432344_43432880_43433156_43433739_43433874_43434293
transcript_82860.known	chr7	+	745	6	FSM	ENSMUSG00000064023.5	ENSMUST00000205537.2	745	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	11.9230868486311	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAGACCCCTGTGGGAAA	2896	False	NA	NA	False	NA	NA	NA	43447019	43453095	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43447072_43447478_43447557_43448047_43448208_43448488_43448752_43451503_43451638_43453037
transcript_82862.known	chr7	+	1322	5	FSM	ENSMUSG00000064023.5	ENSMUST00000085461.4	1322	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_4	3.90512483795333	594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCGACTGTGCTTTGACC	2877	False	NA	28	True	AATAAA	-18	NA	43447000	43453246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43447557_43448047_43448208_43448488_43448752_43451503_43451638_43453037
transcript_82864.known	chr7	+	1895	6	FSM	ENSMUSG00000030713.7	ENSMUST00000032955.7	1895	6	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.489897948556636	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTAGTCTTCATGTTTTT	NA	False	NA	NA	False	ATTAAA	-9	NA	43460717	43465783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43460918_43461346_43461452_43461783_43461926_43462218_43462467_43462653_43462791_43464720
transcript_82867.known	chr7	+	1239	5	FSM	ENSMUSG00000074155.3	ENSMUST00000048444.7	1239	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.433012701892219	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATATTTCTCCTCCTGTA	NA	False	NA	NA	False	AATAAA	-18	NA	43491692	43500605	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43491813_43494591_43494857_43496407_43496665_43496864_43496999_43500142
transcript_82869.nnic	chr7	+	1526	6	NNC	ENSMUSG00000055193.5	novel	845	5	NA	NA	-2255	447	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2.5298221281347	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAAGCAGCTGGGCAG	827	False	NA	NA	False	NA	NA	NA	43580908	43589510	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_43581146_43583166_43583235_43586828_43586980_43587764_43588049_43588168_43588306_43588861
transcript_8287.nic	chr10	-	1293	5	ISM	ENSMUSG00000035478.15	ENSMUST00000105347.2	914	6	298	-443	-95	0	3prime_fragment	FALSE	canonical	3	1097	junction_1	94.3328548279972	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80231255	80228372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_80228853_80228928_80229115_80229726_80229905_80230399_80230491_80230897
transcript_82873.known	chr7	+	870	5	FSM	ENSMUSG00000059042.4	ENSMUST00000081399.4	870	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.433012701892219	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTCAAGGTCTGACATTCT	NA	False	NA	NA	False	AATAAA	-20	NA	43625484	43629800	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43625567_43627749_43627910_43628703_43628991_43629086_43629224_43629596
transcript_82875.known	chr7	+	855	5	FSM	ENSMUSG00000060177.7	ENSMUST00000077528.7	855	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGTTCAAGGTCTGACATT	NA	False	NA	NA	False	AATAAA	-18	NA	43762096	43766346	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43762172_43764119_43764280_43765255_43765537_43765632_43765770_43766144
transcript_82881.known	chr7	+	954	5	FSM	ENSMUSG00000063903.6	ENSMUST00000075162.5	954	5	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	17.0934929139717	424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCAAGTTCTGACATTCTC	NA	False	NA	7	True	AATAAA	-21	NA	43874783	43879042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43874949_43876944_43877105_43877951_43878239_43878334_43878472_43878837
transcript_82882.known	chr7	+	755	5	FSM	ENSMUSG00000063903.6	ENSMUST00000206144.2	755	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	31.0241841149771	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAACTATGGCTGAAAAT	NA	False	NA	-68	True	TTTAAA	-18	NA	43874866	43878967	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43874908_43876944_43877105_43877951_43878239_43878334_43878472_43878837
transcript_82893.known	chr7	-	1306	5	FSM	ENSMUSG00000038782.8	ENSMUST00000237383.2	1306	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.34477204006491	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTATCTGACTGTTTATC	NA	False	NA	NA	False	AATAAA	-23	NA	43896119	43879349	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_43880066_43880205_43880335_43880749_43880897_43881779_43881981_43896006
transcript_82895.nnic	chr7	-	1301	5	NNC	ENSMUSG00000038782.8	novel	1306	5	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2.77263412660235	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCAGTATCTGACTGTTT	NA	False	NA	NA	False	AATAAA	-20	NA	43896118	43879352	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_43880066_43880749_43880897_43881779_43881981_43890596_43890725_43896006
transcript_82897.nic	chr7	-	1250	5	NIC	ENSMUSG00000038782.8	novel	1166	5	NA	NA	-4	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_1	2.95803989154981	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTCAGTATCTGACTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	43896123	43879353	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_43880066_43880266_43880340_43880749_43880897_43881779_43881981_43896006
transcript_82898.nnic	chr7	-	1088	4	NNC	ENSMUSG00000038782.8	novel	1306	5	NA	NA	-4	1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	2.86744175568088	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCAGTATCTGACTGTTT	NA	False	NA	NA	False	AATAAA	-20	NA	43896123	43879352	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_43880066_43880749_43880807_43881779_43881981_43896006
transcript_8290.known	chr10	-	1118	4	FSM	ENSMUSG00000035478.15	ENSMUST00000142997.8	1118	4	0	0	0	0	multi-exon	FALSE	canonical	3	1197	junction_3	65.3214274866134	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80231004	80228372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80229115_80229726_80229905_80230399_80230491_80230897
transcript_82900.nnic	chr7	-	1178	4	NIC	ENSMUSG00000038782.8	novel	1306	5	NA	NA	-4	1	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	1.24721912892465	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCAGTATCTGACTGTTT	NA	False	NA	NA	False	AATAAA	-20	NA	43896123	43879352	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_43880066_43880749_43880897_43881779_43881981_43896006
transcript_82905.nic	chr7	+	2294	8	NIC	ENSMUSG00000045411.17	novel	2092	7	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	337.565594532744	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896143	43901739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_43896233_43896661_43896841_43897333_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
transcript_82907.known	chr7	+	988	8	FSM	ENSMUSG00000045411.17	ENSMUST00000146155.8	988	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	335.825391948779	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTTGACCCAGAAGGGCC	NA	False	NA	NA	False	NA	NA	NA	43896210	43900498	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43896248_43896674_43896841_43897333_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
transcript_82912.known	chr7	+	759	7	FSM	ENSMUSG00000045411.17	ENSMUST00000185481.7	759	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	300.418411922808	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCATTTTGAGGCCACCG	NA	False	NA	NA	False	NA	NA	NA	43896177	43900401	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43896233_43896674_43896841_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
transcript_82917.known	chr7	+	2092	7	FSM	ENSMUSG00000045411.17	ENSMUST00000084937.11	2092	7	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_1	279.849612391291	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896210	43901739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43896248_43896661_43896841_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
transcript_82919.known	chr7	+	676	7	FSM	ENSMUSG00000045411.17	ENSMUST00000187524.7	676	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	348.685826433418	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGTCAGCGTTGGGAATCC	NA	False	NA	NA	False	GGGGCT	-38	NA	43896222	43900379	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43896233_43897333_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
transcript_82925.known	chr7	+	784	6	FSM	ENSMUSG00000045411.17	ENSMUST00000137702.8	784	6	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_1	258.311904487579	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCCTGCTCACAGCAGCCC	NA	False	NA	NA	False	NA	NA	NA	43896151	43900566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43896233_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
transcript_82926.known	chr7	+	2908	6	FSM	ENSMUSG00000045411.17	ENSMUST00000107948.8	2908	6	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	279.671664635515	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTAGGGTGTGCTGTTTG	NA	False	NA	18	True	ATTAAA	-18	NA	43896214	43901737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43896248_43896674_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
transcript_82927.known	chr7	+	367	5	FSM	ENSMUSG00000045411.17	ENSMUST00000187581.7	367	5	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_1	236.591816215185	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTGAGGGGTTTCCATTC	NA	False	NA	NA	False	NA	NA	NA	43896241	43899952	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43896248_43897675_43897720_43898965_43899024_43899444_43899484_43899732
transcript_82930.known	chr7	+	956	2	FSM	ENSMUSG00000045411.17	ENSMUST00000136210.3	956	2	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATCTGAGGACCTCTAAAT	NA	False	NA	NA	False	NA	NA	NA	43896220	43897590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43896248_43896661
transcript_82931.known	chr7	+	3336	5	FSM	ENSMUSG00000045411.17	ENSMUST00000107950.9	3336	5	0	0	0	0	multi-exon	FALSE	canonical	3	709	junction_3	44.6933999601731	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTAGGGTGTGCTGTTT	NA	False	NA	17	True	ATTAAA	-17	NA	43896212	43901736	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
transcript_82932.known	chr7	+	3610	4	FSM	ENSMUSG00000045411.17	ENSMUST00000107949.8	3610	4	0	0	0	0	multi-exon	FALSE	canonical	3	709	junction_3	48.6095555306659	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTAGGGTGTGCTGTTT	NA	False	NA	17	True	ATTAAA	-17	NA	43896210	43901736	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43897720_43898965_43899024_43899444_43899484_43899732
transcript_82933.known	chr7	+	2096	10	FSM	ENSMUSG00000030731.14	ENSMUST00000120262.2	2096	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	5.90668171555645	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCCCTAGAGGCAAGGGG	NA	False	NA	NA	False	NA	NA	NA	44034291	44049187	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44034374_44035374_44035546_44039919_44040449_44041822_44042196_44042772_44042992_44044833_44044955_44045062_44045235_44045326_44045460_44048509_44048578_44048959
transcript_82934.known	chr7	+	6649	23	FSM	ENSMUSG00000038738.16	ENSMUST00000107935.8	6649	23	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	1.26294945358635	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGAGGTCCCCAGGTGG	3328	False	NA	NA	False	NA	NA	NA	43962111	44006911	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_43962386_43962542_43962747_43963175_43963248_43965456_43965566_43965767_43965920_43968500_43968669_43969066_43969184_43974748_43974827_43975061_43975129_43975379_43975711_43976456_43976651_43982715_43982830_43982966_43983043_43983456_43983484_43991521_43991605_43991843_43991969_43992468_43992605_43993081_43993163_43993929_43993999_43994322_43994442_44000371_44000469_44000980_44004069_44006043
transcript_82940.known	chr7	-	913	6	FSM	ENSMUSG00000008028.16	ENSMUST00000107933.8	913	6	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_3	8.25590697622012	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTTCTCTCGGCAAAGT	NA	False	NA	NA	False	TATAAA	-19	NA	44024454	44009466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44009806_44010473_44010608_44012075_44012197_44012366_44012440_44023746_44023949_44024410
transcript_82945.known	chr7	-	820	5	FSM	ENSMUSG00000008028.16	ENSMUST00000150886.2	820	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	12.5896783120142	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAAGGCGCATGCTCGAAGC	NA	False	NA	NA	False	NA	NA	NA	44023024	44009660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44009806_44010473_44010608_44012075_44012197_44012366_44012440_44022677
transcript_82946.nic	chr7	-	1096	5	NIC	ENSMUSG00000008028.16	novel	913	6	NA	NA	-13	0	intron_retention	FALSE	canonical	2	14	junction_4	7.66485485837795	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTTCTCTCGGCAAAGT	NA	False	NA	NA	False	TATAAA	-19	NA	44024467	44009466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_44009806_44010473_44010608_44012075_44012440_44023746_44023949_44024410
transcript_82950.known	chr7	-	973	4	FSM	ENSMUSG00000008028.16	ENSMUST00000137946.2	973	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	6.79869268479038	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCTCGAGGGGGTGGATAC	NA	False	NA	NA	False	NA	NA	NA	44023938	44009522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44009806_44010473_44010608_44012075_44012440_44023746
transcript_82954.known	chr7	+	1128	6	FSM	ENSMUSG00000038695.14	ENSMUST00000133656.8	1128	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	26.7611658938844	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGCCTGGGCTCAGCTC	4913	False	NA	24	True	AATAAA	-16	NA	44117574	44121076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44117615_44117729_44117842_44118230_44118394_44119835_44119962_44120282_44120732_44120838
transcript_82955.known	chr7	+	922	6	FSM	ENSMUSG00000038695.14	ENSMUST00000118493.8	922	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	23.6016948543955	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCTGCCTCAATAAATCTG	4834	False	NA	-7	True	NA	NA	NA	44117495	44121045	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44117615_44117729_44117842_44118230_44118394_44119835_44119962_44120536_44120732_44120838
transcript_82959.known	chr7	+	864	5	FSM	ENSMUSG00000038695.14	ENSMUST00000118628.8	864	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	14.4460202131937	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATTTGTGCCTGGGCTCA	4807	False	NA	20	True	AATAAA	-12	NA	44117468	44121072	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44117615_44118230_44118394_44119835_44119962_44120536_44120732_44120838
transcript_82963.known	chr7	+	693	4	FSM	ENSMUSG00000038695.14	ENSMUST00000206887.2	693	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	18.5472369909914	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTGTGCCTGGGCTCAG	4784	False	NA	21	True	AATAAA	-13	NA	44117445	44121073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44117615_44118230_44118394_44119835_44119962_44120838
transcript_82967.known	chr7	-	1662	8	FSM	ENSMUSG00000008140.19	ENSMUST00000118515.9	1662	8	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_1	346.110162950988	777	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTGCCTTCTGTGCTTG	NA	False	NA	-1	True	ATTAAA	-31	NA	44145830	44139534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44140395_44140586_44140674_44141378_44141473_44141567_44141750_44141977_44142083_44142613_44142724_44144231_44144305_44145679
transcript_82968.known	chr7	-	1855	7	FSM	ENSMUSG00000008140.19	ENSMUST00000239015.2	1855	7	0	0	0	0	multi-exon	FALSE	canonical	3	638	junction_1	150.719386056782	1554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATTTCTTGGTTCATTC	NA	False	NA	27	True	NA	NA	NA	44145937	44139361	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44140395_44141378_44141473_44141567_44141750_44141977_44142083_44142613_44142724_44144231_44144305_44145679
transcript_82969.known	chr7	+	862	5	FSM	ENSMUSG00000051113.10	ENSMUST00000107927.5	862	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.78535710713571	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCTGGTTCTTTATGTGA	5405	False	NA	NA	False	AATAAA	-27	NA	44146004	44150564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44146155_44146338_44146458_44146926_44147058_44149573_44149863_44150391
transcript_8297.known	chr10	-	605	3	FSM	ENSMUSG00000020163.13	ENSMUST00000141683.2	605	3	0	0	0	0	multi-exon	FALSE	canonical	2	31	junction_2	2065	1487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCCTGGCTCCTTCCTCAT	NA	False	NA	-2	True	ATTAAA	-20	NA	80242629	80238831	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80238990_80239969_80240121_80242333
transcript_82970.known	chr7	+	799	5	FSM	ENSMUSG00000051113.10	ENSMUST00000206398.2	799	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.58113883008419	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGAAGCCCTGGTTCTT	5492	False	NA	NA	False	AATAAA	-20	NA	44146091	44150557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44146155_44146338_44146489_44146926_44147058_44149573_44149863_44150391
transcript_82974.known	chr7	+	366	2	FSM	ENSMUSG00000051113.10	ENSMUST00000205422.2	366	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTGTCTCAGTTTCCTT	5423	False	NA	NA	False	NA	NA	NA	44146022	44146572	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44146155_44146338
transcript_82975.known	chr7	-	3454	27	FSM	ENSMUSG00000038644.15	ENSMUST00000049343.15	3454	27	0	0	0	0	multi-exon	FALSE	canonical	3	875	junction_26	151.95728923444	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTGTTGTGGTCTTTG	NA	False	NA	-2	True	AATAAA	-21	NA	44198271	44182169	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198178
transcript_8298.known	chr10	-	520	3	FSM	ENSMUSG00000020163.13	ENSMUST00000138428.8	520	3	0	0	0	0	multi-exon	FALSE	canonical	1	12	junction_2	2074.5	2257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTGGCTCCTTCCTCATC	NA	False	NA	-1	True	ATTAAA	-21	NA	80242600	80238830	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80238990_80239969_80240121_80242390
transcript_82984.known	chr7	-	532	4	FSM	ENSMUSG00000038644.15	ENSMUST00000154783.8	532	4	0	0	0	0	multi-exon	FALSE	canonical	3	1444	junction_2	30.7281991373107	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTGTGTGTTGTGGTCT	NA	False	NA	-5	True	AATAAA	-18	NA	44183342	44182172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107
transcript_82987.nic	chr7	-	2046	10	NIC	ENSMUSG00000060601.14	novel	1988	10	NA	NA	-66	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_9	218.641823340321	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGAGTACAAGCCATTCC	NA	False	NA	-16	True	AATAAA	-15	NA	44203441	44199055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201661_44201930_44202045_44202120_44202179_44203002_44203133_44203228
transcript_82988.nic	chr7	-	2049	10	NIC	ENSMUSG00000060601.14	novel	1948	10	NA	NA	-66	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_9	233.415699748087	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGAGTACAAGCCATTCC	NA	False	NA	-16	True	AATAAA	-15	NA	44203441	44199055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201661_44201930_44202045_44202120_44202182_44203002_44203133_44203228
transcript_82989.nic	chr7	-	2055	10	NIC	ENSMUSG00000060601.14	novel	1999	10	NA	NA	-66	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_9	206.953087067851	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGAGTACAAGCCATTCC	NA	False	NA	-16	True	AATAAA	-15	NA	44203441	44199055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201670_44201930_44202045_44202120_44202179_44203002_44203133_44203228
transcript_82990.known	chr7	-	1944	10	FSM	ENSMUSG00000060601.14	ENSMUST00000167197.8	1944	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_9	223.571073020098	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAAACAAAAATAAA	NA	False	NA	-36	True	NA	NA	NA	44203347	44199075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201670_44201930_44202045_44202120_44202182_44203002_44203133_44203228
transcript_82993.nic	chr7	-	2253	9	NIC	ENSMUSG00000060601.14	novel	1853	9	NA	NA	-3	0	intron_retention	FALSE	canonical	1	2	junction_8	200.783737825054	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGAGTACAAGCCATTCC	NA	False	NA	-16	True	AATAAA	-15	NA	44203378	44199055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44202045_44202120_44202179_44203002_44203133_44203228
transcript_82996.known	chr7	-	1988	10	FSM	ENSMUSG00000060601.14	ENSMUST00000107911.8	1988	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	219.110209599227	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCTGAGCCCAGTGTGGA	NA	False	NA	-1	True	AATAAA	-30	NA	44203372	44199040	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201661_44201930_44202045_44202120_44202179_44203002_44203133_44203232
transcript_82997.known	chr7	-	1999	10	FSM	ENSMUSG00000060601.14	ENSMUST00000073488.12	1999	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_9	207.457626195488	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGAGCCCAGTGTGGAG	NA	False	NA	0	True	AATAAA	-31	NA	44203373	44199039	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201670_44201930_44202045_44202120_44202179_44203002_44203133_44203232
transcript_82998.known	chr7	+	1560	9	FSM	ENSMUSG00000002204.10	ENSMUST00000002274.10	1560	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	2.82842712474619	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAACTTTCCATGGAAGGAT	2542	False	NA	NA	False	ATTAAA	-18	NA	44221803	44236286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44222114_44230627_44230764_44230844_44230969_44231106_44231226_44231765_44231966_44234422_44234546_44234642_44234788_44235137_44235237_44235982
transcript_8300.known	chr10	-	445	3	FSM	ENSMUSG00000020163.13	ENSMUST00000020372.6	445	3	0	0	0	0	multi-exon	FALSE	canonical	3	4161	junction_1	104.5	38864	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTGGCTCCTTCCTCATC	NA	False	NA	-1	True	ATTAAA	-21	NA	80242664	80238830	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80238990_80239969_80240121_80242529
transcript_83000.nnic	chr7	-	1595	7	NNC	ENSMUSG00000030739.19	novel	6390	40	NA	NA	-47	0	at_least_one_novel_splicesite	TRUE	canonical	3	11	junction_6	26.7669987526099	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGCTGCGTTTCTAATT	NA	False	NA	-1	True	AATAAA	-17	NA	44263596	44255226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_44255788_44256054_44256228_44257858_44257968_44260946_44261156_44262858_44262983_44263065_44263155_44263266
transcript_83001.known	chr7	-	1438	7	FSM	ENSMUSG00000030739.19	ENSMUST00000208044.2	1438	7	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_6	22.8837642591132	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCATGGCTGCGTTTCTAA	NA	False	NA	-3	True	AATAAA	-15	NA	44263549	44255228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44255788_44256054_44256228_44257858_44257968_44260946_44261156_44262858_44262983_44263065_44263155_44263374
transcript_83006.nic	chr7	-	792	4	ISM	ENSMUSG00000030739.19	ENSMUST00000208044.2	1438	7	-54	5577	-54	-5563	5prime_fragment	FALSE	canonical	3	22	junction_3	29.7694847490215	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGCCCTAACTAGTAGAT	NA	False	NA	NA	False	NA	NA	NA	44263603	44260805	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_44261156_44262858_44262983_44263065_44263155_44263374
transcript_83008.nnic	chr7	-	793	3	NNC	ENSMUSG00000030739.19	novel	6390	40	NA	NA	6787	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	41	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGCTGCGTTTCTAATT	403	False	NA	-1	True	AATAAA	-17	NA	44256762	44255226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_44255788_44256054_44256228_44256703
transcript_83009.nic	chr7	-	1088	2	ISM	ENSMUSG00000030739.19	ENSMUST00000208044.2	1438	7	6968	-2	6968	0	3prime_fragment	FALSE	canonical	3	83	junction_1	0	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGCTGCGTTTCTAATT	584	False	NA	-1	True	AATAAA	-17	NA	44256581	44255226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_44255788_44256054
transcript_83010.nic	chr7	+	909	7	NIC	ENSMUSG00000066500.6	novel	704	7	NA	NA	-73	113	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	1.70782512765993	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGAGTGTATACTCGGT	115	False	NA	NA	False	ATTAAA	-32	NA	44358092	44369381	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_44358399_44358479_44358555_44359678_44359766_44359934_44359956_44362421_44362503_44364751_44364876_44369166
transcript_83011.nic	chr7	+	795	7	NIC	ENSMUSG00000066500.6	novel	490	6	NA	NA	-73	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	1.70782512765993	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATGTCTGTACATTCCC	115	False	NA	NA	False	AATAAA	-24	NA	44358092	44369267	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_44358399_44358479_44358555_44359678_44359766_44359934_44359956_44362421_44362503_44364751_44364876_44369166
transcript_83012.known	chr7	+	632	6	FSM	ENSMUSG00000066500.6	ENSMUST00000085422.4	632	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2.1540659228538	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAATTCTTTAATGTCTG	188	False	NA	NA	False	AATAAA	-15	NA	44358165	44369258	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44358399_44358479_44358555_44359678_44359766_44359934_44359956_44364751_44364876_44369166
transcript_83015.known	chr7	+	490	6	FSM	ENSMUSG00000066500.6	ENSMUST00000207182.2	490	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	1.4142135623731	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATGTCTGTACATTCCC	501	False	NA	NA	False	AATAAA	-24	NA	44358478	44369267	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44358555_44359678_44359766_44359934_44359956_44362421_44362503_44364751_44364876_44369166
transcript_83019.known	chr7	+	704	7	FSM	ENSMUSG00000066500.6	ENSMUST00000209004.2	704	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	2.40947204913349	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTCTGTACATTCCCT	188	False	NA	NA	False	AATAAA	-25	NA	44358165	44369268	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44358395_44358479_44358555_44359678_44359766_44359934_44359956_44362421_44362503_44364751_44364876_44369181
transcript_83022.known	chr7	+	1969	15	FSM	ENSMUSG00000002205.17	ENSMUST00000002275.15	1969	15	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	19.1081775420785	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGAGAGTTCAGTGTTC	NA	False	NA	16	True	AATAAA	-16	NA	44397836	44426939	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44398076_44401538_44401601_44403239_44403380_44407169_44407320_44409123_44409319_44410301_44410367_44412414_44412482_44413548_44413634_44414206_44414313_44416545_44416639_44417866_44418000_44418956_44419078_44420287_44420347_44424799_44424960_44426645
transcript_83033.known	chr7	-	3091	5	FSM	ENSMUSG00000048012.20	ENSMUST00000118162.8	3091	5	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_4	23.9217474278114	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTTCATCTAGACCCGCG	NA	False	NA	NA	False	AATAAA	-26	NA	44397730	44381432	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44384070_44387389_44387456_44388926_44389060_44391112_44391290_44397652
transcript_83034.known	chr7	-	1006	5	FSM	ENSMUSG00000048012.20	ENSMUST00000140599.9	1006	5	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	7.63216876123687	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCGGATCATCAGAGTCCTG	NA	False	NA	NA	False	NA	NA	NA	44397773	44383882	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44384070_44387389_44387459_44388926_44389060_44391112_44391290_44397333
transcript_83036.known	chr7	-	3624	5	FSM	ENSMUSG00000048012.20	ENSMUST00000120074.8	3624	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	25.0499500997507	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAGAAATAAAGTGTTCGC	NA	False	NA	-40	True	GATAAA	-2	NA	44397473	44380938	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44384070_44387389_44387459_44388926_44389060_44391112_44391290_44397359
transcript_83037.known	chr7	+	718	4	FSM	ENSMUSG00000002205.17	ENSMUST00000135783.2	718	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	72.692655902933	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCCTCCAGTAAGCCTCCT	NA	False	NA	NA	False	AATAAA	-18	NA	44401538	44408831	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44401601_44403239_44403380_44407169_44407320_44408465
transcript_83038.known	chr7	+	735	4	FSM	ENSMUSG00000002205.17	ENSMUST00000136069.9	735	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	72.692655902933	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCCTCCAGTAAGCCTCCT	NA	False	NA	NA	False	AATAAA	-18	NA	44401538	44408831	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44401601_44403239_44403380_44407169_44407320_44408448
transcript_83039.known	chr7	+	595	8	FSM	ENSMUSG00000002205.17	ENSMUST00000144515.9	595	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	53.1681967237666	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGAGGAGCCTTCAGTCAG	NA	False	NA	NA	False	NA	NA	NA	44398070	44414227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44398076_44401538_44401601_44403239_44403380_44407169_44407320_44410301_44410367_44412414_44412482_44413548_44413634_44414206
transcript_83042.known	chr7	+	1592	5	FSM	ENSMUSG00000011096.18	ENSMUST00000054343.15	1592	5	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	63.711753232822	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTGTGTGTGAGTGTGA	1400	False	NA	19	True	ATTAAA	-24	NA	44498647	44504845	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44498773_44501994_44502384_44503203_44503282_44503362_44503533_44504015
transcript_83044.known	chr7	+	1160	5	FSM	ENSMUSG00000011096.18	ENSMUST00000107882.8	1160	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	107.27622057101	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAACAGAAAGCCTTGGCCT	1805	False	NA	NA	False	NA	NA	NA	44499052	44504160	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44499431_44501994_44502384_44503203_44503282_44503362_44503533_44504015
transcript_83049.known	chr7	-	1816	3	FSM	ENSMUSG00000038539.16	ENSMUST00000047356.11	1816	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	35.5	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTGTCTTATCTTTGA	9686	False	NA	0	True	AATAAA	-19	NA	44466082	44461679	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44462945_44464412_44464707_44465825
transcript_83050.known	chr7	+	2722	2	FSM	ENSMUSG00000109511.2	ENSMUST00000057195.17	2722	2	0	0	0	0	multi-exon	FALSE	canonical	3	986	junction_1	0	799	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGTGAGTATGGGTAG	75	False	NA	21	True	AATAAA	-21	NA	44465511	44480236	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44465908_44477910
transcript_83052.known	chr7	+	715	2	FSM	ENSMUSG00000109511.2	ENSMUST00000208172.2	715	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCAGTGGCAGTGCATCCC	287	False	NA	NA	False	NA	NA	NA	44465723	44478465	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44465884_44477910
transcript_83053.known	chr7	+	2708	2	FSM	ENSMUSG00000109511.2	ENSMUST00000208626.2	2708	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTGCTGTGAGTATGGG	75	False	NA	18	True	AATAAA	-18	NA	44465511	44480233	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44465897_44477910
transcript_83054.known	chr7	-	2362	17	FSM	ENSMUSG00000038520.16	ENSMUST00000145959.8	2362	17	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	59.8690954813082	257	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCGCTGGCTGGCATCAGG	7699	False	NA	-10	True	AATAAA	-15	NA	44498503	44490455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44490845_44490966_44491054_44491406_44491524_44491609_44491725_44492044_44492145_44492239_44492341_44492418_44492536_44492855_44492951_44493507_44493612_44493694_44493824_44494435_44494598_44494680_44494793_44495298_44495507_44496184_44496309_44497693_44497766_44497859_44497959_44498272
transcript_83055.known	chr7	+	1757	5	FSM	ENSMUSG00000011096.18	ENSMUST00000107880.9	1757	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	128.154203988788	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTGTGTGTGAGTGTGA	2183	False	NA	19	True	ATTAAA	-24	NA	44499430	44504845	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44499721_44501994_44502384_44503203_44503282_44503362_44503533_44504015
transcript_83056.known	chr7	+	332	2	FSM	ENSMUSG00000011096.18	ENSMUST00000136232.2	332	2	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCAGCCCTGGCCAGGGAG	2572	False	NA	NA	False	NA	NA	NA	44499819	44502287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44499859_44501994
transcript_83057.known	chr7	-	1735	3	FSM	ENSMUSG00000038539.16	ENSMUST00000107893.9	1735	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	23.5	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTGTCTTATCTTTG	8931	False	NA	-1	True	AATAAA	-18	NA	44465082	44461680	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44462945_44464412_44464707_44464905
transcript_83058.known	chr7	+	1770	17	FSM	ENSMUSG00000002963.18	ENSMUST00000107876.8	1770	17	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	53.8118466859297	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACAGCCATCTTGCTGGG	9315	False	NA	15	True	AATAAA	-17	NA	44506562	44512074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44506727_44506818_44506979_44507586_44507634_44507876_44508174_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
transcript_8306.known	chr10	-	5250	15	FSM	ENSMUSG00000047417.19	ENSMUST00000057910.16	5250	15	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_13	35.2049393566022	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACAAAGCCCAGGTCTGT	9421	False	NA	NA	False	AATAAA	-14	NA	80397394	80376758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80378316_80378398_80378659_80378741_80378858_80379134_80379246_80379480_80379555_80379836_80379951_80380116_80380255_80380593_80380708_80381296_80381421_80381709_80381842_80382135_80382300_80383606_80383821_80384265_80384368_80385166_80386900_80397097
transcript_83064.known	chr7	+	2184	16	FSM	ENSMUSG00000002963.18	ENSMUST00000003044.14	2184	16	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_9	24.7059147214229	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGACTTAGCAGCTGTGT	9335	False	NA	90	True	NA	NA	NA	44506582	44512416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44506979_44507586_44507634_44507876_44508174_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
transcript_83067.known	chr7	+	1550	15	FSM	ENSMUSG00000002963.18	ENSMUST00000098478.7	1550	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	63.3371686987626	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCACAGCCATCTTGCTGG	9518	False	NA	14	True	AATAAA	-16	NA	44506765	44512073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44506979_44507586_44507634_44507876_44508174_44509146_44509227_44509311_44509370_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
transcript_83068.known	chr7	+	1573	15	FSM	ENSMUSG00000002963.18	ENSMUST00000123015.8	1573	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	63.8254955135565	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACAGCCATCTTGCTGGG	9524	False	NA	15	True	AATAAA	-17	NA	44506771	44512074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44506979_44507586_44507634_44507876_44508174_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
transcript_83076.known	chr7	+	455	3	FSM	ENSMUSG00000002963.18	ENSMUST00000144669.3	455	3	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_2	39.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTGGGAGGCAAAACAGG	NA	False	NA	35	True	AATAAA	-37	NA	44511120	44512094	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44511183_44511617_44511706_44511789
transcript_83078.known	chr7	-	657	7	FSM	ENSMUSG00000038502.18	ENSMUST00000207416.2	657	7	0	0	0	0	multi-exon	FALSE	canonical	3	386	junction_1	156.981598355419	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGTCCCTCCCTGCTTG	NA	False	NA	-8	True	AATAAA	-15	NA	44514364	44512490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44512619_44512802_44512869_44512958_44513157_44513806_44513912_44514035_44514094_44514185_44514260_44514336
transcript_8308.known	chr10	-	1468	5	FSM	ENSMUSG00000003346.15	ENSMUST00000003436.12	1468	5	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_4	42.7631558704453	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTGCTTGGCTCCTTTGT	7798	False	NA	-5	True	ATTAAA	-15	NA	80426175	80419487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80419898_80419976_80420157_80421441_80421637_80422348_80422865_80426008
transcript_83082.known	chr7	-	2619	18	FSM	ENSMUSG00000002968.10	ENSMUST00000003049.8	2619	18	0	0	0	0	multi-exon	FALSE	canonical	3	744	junction_9	66.5493546850497	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGGCTCCCGTGACTGACG	9929	False	NA	-6	True	AATAAA	-17	NA	44542136	44528807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44528939_44529350_44529529_44529675_44529895_44529990_44530063_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533672_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541522_44541569_44541654
transcript_83084.nic	chr7	-	2259	17	NIC	ENSMUSG00000002968.10	novel	2619	18	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	109	junction_3	203.468018064265	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGGCTCCCGTGACTGACG	6943	False	NA	-6	True	AATAAA	-17	NA	44541848	44528807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_44528939_44529350_44529529_44529675_44529895_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533672_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541522_44541569_44541654
transcript_83089.known	chr7	-	3693	18	FSM	ENSMUSG00000002968.10	ENSMUST00000208253.2	3693	18	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	207.582576223432	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGGCCGTGGGCTTTCC	6976	False	NA	-4	True	NA	NA	NA	44541815	44526188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44527715_44529350_44529529_44529675_44529895_44529990_44530063_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533672_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541522_44541569_44541654
transcript_8309.nnic	chr10	-	690	3	NNC	ENSMUSG00000003346.15	novel	1468	5	NA	NA	1803	0	at_least_one_novel_splicesite	TRUE	canonical	1	4	junction_2	200.5	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTGCTTGGCTCCTTTGT	1206	False	NA	-5	True	ATTAAA	-15	NA	80420655	80419487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_80419898_80419976_80420157_80420555
transcript_83090.known	chr7	-	2678	17	FSM	ENSMUSG00000002968.10	ENSMUST00000208551.2	2678	17	0	0	0	0	multi-exon	FALSE	canonical	3	744	junction_8	64.3087948398195	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAATGCCCGGCTCCCGTG	7001	False	NA	-13	True	AATAAA	-10	NA	44541790	44528814	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44529529_44529675_44529895_44529990_44530063_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533672_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541522_44541569_44541654
transcript_83091.known	chr7	-	3301	23	FSM	ENSMUSG00000060279.15	ENSMUST00000107857.11	3301	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	144.442358888666	536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATTACCCCAGCTATTGA	NA	False	NA	-14	True	AATAAA	-13	NA	44578850	44549808	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44550240_44550410_44550546_44550660_44550731_44550807_44550925_44551014_44551139_44552172_44552263_44552397_44552481_44552567_44552625_44553164_44553326_44553412_44553581_44553660_44553893_44554076_44554175_44555108_44555292_44555494_44555633_44555734_44555904_44556257_44556409_44557147_44557257_44558643_44558746_44559122_44559253_44565264_44565459_44565586_44565730_44565825_44565895_44578703
transcript_83092.known	chr7	+	1698	11	FSM	ENSMUSG00000011658.17	ENSMUST00000071207.14	1698	11	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_5	12.7373466624725	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCGGGCTCTTTGCTGTCG	NA	False	NA	26	True	AATAAA	-37	NA	44545502	44550048	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44545787_44545970_44546093_44546338_44546424_44546684_44546754_44546943_44547049_44547926_44548125_44548199_44548296_44548408_44548516_44548597_44548663_44548735_44548811_44549556
transcript_83095.known	chr7	+	1453	10	FSM	ENSMUSG00000011658.17	ENSMUST00000209039.2	1453	10	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_5	26.1448954015034	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCTCCCAGGCGCCCCCA	NA	False	NA	6	True	AATAAA	-17	NA	44545529	44550028	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44545787_44545970_44546093_44546338_44546424_44546684_44546754_44546943_44547049_44548199_44548296_44548408_44548516_44548597_44548663_44548735_44548811_44549556
transcript_831.known	chr1	-	4980	16	FSM	ENSMUSG00000025912.17	ENSMUST00000088658.11	4980	16	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_10	11.7158961339806	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGCTGGCTTGGCATTGC	NA	False	NA	-8	True	AATAAA	-12	NA	9770434	9737639	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_9740238_9741803_9741984_9742436_9742542_9742764_9742882_9743325_9743441_9743969_9744113_9746191_9746561_9748496_9748731_9752009_9752115_9753321_9753394_9755860_9756036_9757785_9758007_9760305_9760399_9762942_9763015_9763511_9763618_9770159
transcript_83102.known	chr7	+	2717	8	FSM	ENSMUSG00000011658.17	ENSMUST00000207480.2	2717	8	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	10.3903408834104	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCGGGCTCTTTGCTGTCG	NA	False	NA	26	True	AATAAA	-37	NA	44545516	44550048	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44545787_44545970_44546093_44546338_44546424_44546684_44546754_44546943_44548125_44548199_44548296_44548408_44548811_44549556
transcript_83104.known	chr7	+	853	5	FSM	ENSMUSG00000011658.17	ENSMUST00000209132.2	853	5	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	10.3531396204243	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGAACCCTGTCTAGGCAA	NA	False	NA	NA	False	NA	NA	NA	44545516	44547250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44545787_44545970_44546093_44546338_44546424_44546684_44546754_44546943
transcript_83109.known	chr7	-	3376	23	FSM	ENSMUSG00000060279.15	ENSMUST00000167930.8	3376	23	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_5	144.442358888666	729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTATTGACTGCCCACCCT	NA	False	NA	-3	True	AATAAA	-24	NA	44578914	44549797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44550240_44550410_44550546_44550660_44550731_44550807_44550925_44551014_44551140_44552173_44552263_44552397_44552481_44552567_44552625_44553164_44553326_44553412_44553581_44553660_44553893_44554076_44554175_44555108_44555292_44555494_44555633_44555734_44555904_44556257_44556409_44557147_44557257_44558643_44558746_44559122_44559253_44565264_44565459_44565586_44565730_44565825_44565895_44578703
transcript_83112.known	chr7	+	1806	11	FSM	ENSMUSG00000059891.15	ENSMUST00000080233.9	1806	11	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_2	3.57910603363466	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTCTGACAACTATACTT	1456	False	NA	NA	False	AATAAA	-20	NA	44592684	44607456	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44592878_44593205_44593429_44600202_44600299_44600462_44600547_44601286_44601371_44601969_44602257_44603170_44603366_44603737_44603912_44605875_44606012_44607020_44607178_44607279
transcript_83126.known	chr7	-	2793	19	FSM	ENSMUSG00000007783.11	ENSMUST00000063761.8	2793	19	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_13	17.8819862459058	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCACTGTGCTTTTCTGCG	2664	False	NA	-2	True	AATAAA	-20	NA	44624275	44608796	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44609100_44609267_44609361_44609473_44609588_44610181_44610335_44610942_44611075_44611569_44611735_44612166_44612284_44613327_44613434_44614507_44614691_44614794_44614991_44616049_44616135_44616220_44616329_44616481_44616557_44619828_44619967_44620041_44620144_44620659_44620832_44622433_44622574_44623150_44623305_44624018
transcript_83132.known	chr7	+	420	2	FSM	ENSMUSG00000109111.2	ENSMUST00000209089.2	420	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTTTTGGTATTTTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	44623003	44623726	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44623196_44623498
transcript_83148.known	chr7	-	2147	10	FSM	ENSMUSG00000109324.3	ENSMUST00000207370.2	2147	10	0	0	0	0	multi-exon	FALSE	canonical	3	3261	junction_9	152.269092540837	7701	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTGGCTGTTTGCGTGGTT	NA	False	NA	NA	False	NA	NA	NA	44635916	44625412	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44626408_44626927_44627050_44627550_44627702_44628098_44628215_44628306_44628395_44628806_44628950_44631010_44631075_44631161_44631318_44632909_44633012_44635706
transcript_83149.known	chr7	-	1508	11	FSM	ENSMUSG00000109324.3	ENSMUST00000107843.11	1508	11	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_9	1333.46760365597	2740	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTTCTCGCCCTGGGGCT	NA	False	NA	-30	True	AATAAA	-17	NA	44635992	44626181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44626408_44626927_44627050_44627550_44627702_44628098_44628215_44628306_44628395_44628806_44628950_44631010_44631075_44631161_44631318_44632909_44633012_44633503_44633558_44635706
transcript_83150.known	chr7	-	945	8	FSM	ENSMUSG00000109324.3	ENSMUST00000207659.2	945	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1257.72160379516	1953	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTTCTCGCCCTGGGGCT	NA	False	NA	-30	True	AATAAA	-17	NA	44635780	44626181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44626408_44626927_44627050_44627550_44627699_44628896_44628950_44631010_44631075_44631161_44631318_44632909_44633012_44635706
transcript_83151.nic	chr7	+	1403	8	NIC	ENSMUSG00000003184.16	novel	2031	8	NA	NA	-36	0	combination_of_known_junctions	TRUE	canonical	3	10	junction_6	54.0181375435461	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGCTGTCGACTGCGTC	NA	False	NA	5	True	AATAAA	-20	NA	44647035	44651814	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_44647333_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44649971_44650068_44650241_44651096_44651213_44651587
transcript_83152.known	chr7	+	2031	8	FSM	ENSMUSG00000003184.16	ENSMUST00000003284.16	2031	8	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_5	29.0601066054199	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTTGG	NA	False	NA	NA	False	AAAAAG	-11	NA	44647071	44652272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44647333_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44649971_44650068_44650447_44651096_44651213_44651587
transcript_83155.known	chr7	+	1429	8	FSM	ENSMUSG00000003184.16	ENSMUST00000107834.2	1429	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	52.6571506084794	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCTGCTGTCGACTGCGT	NA	False	NA	4	True	AATAAA	-19	NA	44647372	44651813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44647491_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44649971_44650068_44650447_44651096_44651213_44651587
transcript_83159.known	chr7	+	1641	7	FSM	ENSMUSG00000003184.16	ENSMUST00000207555.2	1641	7	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_1	17.7458915433028	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGCGTCTAGGCTGGTGG	NA	False	NA	16	True	AATAAA	-31	NA	44647112	44651825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44647333_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44650447_44651096_44651213_44651587
transcript_83164.known	chr7	+	1797	7	FSM	ENSMUSG00000003184.16	ENSMUST00000207476.2	1797	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	53.8196577056707	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGCTGTCGACTGCGTC	NA	False	NA	5	True	AATAAA	-20	NA	44647103	44651814	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44647491_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44650447_44651096_44651213_44651587
transcript_83169.known	chr7	-	1596	8	FSM	ENSMUSG00000003190.13	ENSMUST00000208128.2	1596	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	69.0081332089167	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGAAAGTGTGTGTGTGT	NA	False	NA	NA	False	ATTAAA	-21	NA	44648136	44640645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44640879_44642167_44642456_44643234_44643696_44643786_44643874_44645967_44646111_44646301_44646417_44646886_44647068_44648048
transcript_83170.known	chr7	-	1075	7	FSM	ENSMUSG00000003190.13	ENSMUST00000003290.12	1075	7	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_2	18.8473399243029	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGAAAGTGTGTGTGTGT	NA	False	NA	NA	False	ATTAAA	-21	NA	44647003	44640645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44640879_44642167_44642456_44643603_44643696_44643786_44643874_44645967_44646111_44646301_44646417_44646886
transcript_83179.nic	chr7	-	1027	6	NIC	ENSMUSG00000003190.13	novel	1596	8	NA	NA	-44	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_2	59.7943141109587	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGAAAGTGTGTGTGTGT	NA	False	NA	NA	False	ATTAAA	-21	NA	44647047	44640645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_44640879_44642167_44642456_44643786_44643874_44645967_44646111_44646301_44646417_44646886
transcript_83180.nnic	chr7	-	826	6	NIC	ENSMUSG00000003190.13	novel	1075	7	NA	NA	-44	-5	combination_of_known_splicesites	FALSE	canonical	3	11	junction_1	60.7730203297483	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAGCCCGAAAGTGTGTG	NA	False	NA	NA	False	ATTAAA	-16	NA	44647047	44640650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_44640879_44643603_44643696_44643786_44643874_44645967_44646111_44646301_44646417_44646886
transcript_83182.nnic	chr7	-	734	5	NIC	ENSMUSG00000003190.13	novel	1596	8	NA	NA	-44	-5	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	66.4115953730973	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAGCCCGAAAGTGTGTG	NA	False	NA	NA	False	ATTAAA	-16	NA	44647047	44640650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_44640879_44643786_44643874_44645967_44646111_44646301_44646417_44646886
transcript_83185.nnic	chr7	+	884	3	NIC	ENSMUSG00000087138.2	novel	899	3	NA	NA	-4	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCCGGCTACAGACTGAT	NA	False	NA	9	True	NA	NA	NA	44636319	44641750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_44636795_44640800_44640906_44641446
transcript_83187.known	chr7	+	704	2	FSM	ENSMUSG00000087138.2	ENSMUST00000152595.2	704	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCGGCTACAGACTGATTT	NA	False	NA	11	True	NA	NA	NA	44636396	44641752	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44636795_44641446
transcript_83188.known	chr7	+	635	1	FSM	ENSMUSG00000003184.16	ENSMUST00000209006.2	635	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAAACAAAAAAACAGA	NA	False	NA	NA	False	AATATA	-4	NA	44647110	44647745	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44647100_44647700
transcript_83189.known	chr7	+	629	2	FSM	ENSMUSG00000003184.16	ENSMUST00000208906.2	629	2	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGCTGTCGACTGCGTC	NA	False	NA	5	True	AATAAA	-20	NA	44650810	44651814	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44651213_44651587
transcript_83190.known	chr7	+	1059	2	FSM	ENSMUSG00000087138.2	ENSMUST00000150613.2	1059	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACATCCTCAGCCTTTCT	NA	False	NA	NA	False	AATAAA	-11	NA	44636350	44644021	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44636795_44643406
transcript_83193.known	chr7	-	4293	11	FSM	ENSMUSG00000038406.18	ENSMUST00000085383.11	4293	11	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_10	46.9408137978029	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGCGTAGTGGTGTACC	5054	False	NA	-6	True	ATTAAA	-17	NA	44665787	44652371	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44652796_44652920_44653050_44654828_44655048_44655264_44655348_44655729_44658397_44661546_44661663_44661748_44661850_44662121_44662220_44662640_44662699_44662903_44663018_44665503
transcript_83196.known	chr7	-	1409	8	FSM	ENSMUSG00000038406.18	ENSMUST00000210056.2	1409	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	90.4045330270376	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACTCGGCTTGCTTGTTTG	5286	False	NA	NA	False	NA	NA	NA	44665555	44659683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44660423_44661546_44661663_44661748_44661850_44662121_44662220_44662640_44662699_44662903_44663018_44663628_44663760_44665503
transcript_83199.known	chr7	+	995	6	FSM	ENSMUSG00000038387.10	ENSMUST00000044111.10	995	6	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_4	17.1860408471527	179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGATGCTTTTTATTTGA	NA	False	NA	9	True	AATAAA	-17	NA	44667384	44671071	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44667593_44669523_44669612_44669726_44669830_44669913_44670023_44670510_44670630_44670703
transcript_83202.nic	chr7	-	1047	4	ISM	ENSMUSG00000046574.9	ENSMUST00000057293.8	7023	14	-459	22339	-459	-21647	5prime_fragment	FALSE	canonical	3	13	junction_3	4.10960933531265	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTACAGTGCCCTCGTCATT	NA	False	NA	NA	False	NA	NA	NA	44702764	44699325	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_44699553_44699628_44699791_44700641_44700755_44702219
transcript_83205.known	chr7	+	1814	9	FSM	ENSMUSG00000003421.14	ENSMUST00000003513.11	1814	9	0	0	0	0	multi-exon	FALSE	canonical	3	417	junction_1	63.7582102556212	665	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTCTTTGTTGTTTTATT	3085	False	NA	25	True	NA	NA	NA	44711879	44727634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44711956_44722913_44722989_44723405_44723512_44724029_44724112_44725492_44725653_44725733_44725853_44725975_44726164_44726244_44726354_44726735
transcript_83208.known	chr7	+	972	9	FSM	ENSMUSG00000003421.14	ENSMUST00000107829.9	972	9	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_6	164.802912595621	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATGCCTGGCGCCTCATTG	3058	False	NA	27	True	AATAAA	-18	NA	44711852	44726840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44711956_44722913_44722989_44723405_44723512_44724029_44724112_44725492_44725653_44725733_44725853_44726050_44726164_44726244_44726354_44726735
transcript_8321.known	chr10	+	1804	7	FSM	ENSMUSG00000113949.2	ENSMUST00000079883.12	1804	7	0	0	0	0	multi-exon	FALSE	canonical	3	584	junction_5	41.6239781322684	906	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGGCCTTTATCTGTGG	NA	False	NA	13	True	AATAAA	-13	NA	80438713	80451617	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80438784_80444636_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437
transcript_83216.known	chr7	-	1623	8	FSM	ENSMUSG00000007837.12	ENSMUST00000210690.2	1623	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_7	11.5121940673747	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCCTTTCTGGGCGCATT	NA	False	NA	-24	True	AATAAA	-44	NA	44712101	44703007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44703622_44703942_44704072_44706166_44706309_44709395_44709436_44709628_44709811_44710164_44710317_44711011_44711076_44711801
transcript_83220.known	chr7	-	922	7	FSM	ENSMUSG00000007837.12	ENSMUST00000210500.2	922	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	14.1539158303748	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGACCCCCCCCCACACT	NA	False	NA	NA	False	NA	NA	NA	44711082	44703388	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44703622_44703942_44704072_44706166_44706309_44709395_44709436_44709628_44709784_44710164_44710317_44711011
transcript_83221.known	chr7	-	1295	7	FSM	ENSMUSG00000007837.12	ENSMUST00000007981.9	1295	7	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_5	9.01233722306385	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAAATAAAAATGCAA	NA	False	NA	-53	True	AATAAA	-15	NA	44711076	44703036	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44703622_44703942_44704072_44706166_44706309_44709395_44709436_44709628_44709811_44710164_44710317_44711011
transcript_83226.known	chr7	-	876	6	FSM	ENSMUSG00000007837.12	ENSMUST00000209920.2	876	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	10.7962956610126	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAAACTCGGATCAGACGT	NA	False	NA	NA	False	NA	NA	NA	44711129	44703326	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44703622_44703942_44704072_44706166_44706309_44709395_44709436_44710164_44710317_44711011
transcript_83229.known	chr7	-	676	5	FSM	ENSMUSG00000007837.12	ENSMUST00000211337.2	676	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	16.2941707368003	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCCCCCCCCACACTTCG	NA	False	NA	NA	False	NA	NA	NA	44711130	44703385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44703622_44703942_44704072_44709395_44709436_44710164_44710317_44711011
transcript_8323.known	chr10	+	1271	7	FSM	ENSMUSG00000113949.2	ENSMUST00000180350.3	1271	7	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	236.742945453972	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCCTGCTCCCACCTGTT	NA	False	NA	NA	False	NA	NA	NA	80438790	80450797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80439148_80444636_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437
transcript_83231.nnic	chr7	-	1915	8	NNC	ENSMUSG00000003420.9	novel	1770	7	NA	NA	-2737	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_7	25.6515106767613	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGACACCTCTTGATTGCTA	NA	False	NA	67	True	AATAAA	-26	NA	44756012	44742413	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_44742780_44743205_44743323_44744583_44744854_44751333_44751610_44751837_44752096_44752426_44752698_44753063_44753189_44755780
transcript_83234.nnic	chr7	-	1841	8	NNC	ENSMUSG00000003420.9	novel	1770	7	NA	NA	-2737	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_7	25.6515106767613	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGTGTGTGCATCGTT	NA	False	NA	-7	True	CATAAA	-10	NA	44756012	44742487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_44742780_44743205_44743323_44744583_44744854_44751333_44751610_44751837_44752096_44752426_44752698_44753063_44753189_44755780
transcript_83236.known	chr7	-	1453	7	FSM	ENSMUSG00000019539.12	ENSMUST00000211352.2	1453	7	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_6	48.2482008875864	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTCTGTCTGTCTGTC	6660	False	NA	-4	True	AATAAA	-25	NA	44741645	44732336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44732788_44732989_44733190_44734327_44734389_44736088_44736262_44737921_44738125_44740864_44741113_44741528
transcript_83237.nic	chr7	-	1474	7	NIC	ENSMUSG00000019539.12	novel	1453	7	NA	NA	-76	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_6	63.9463751035889	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTCTGTCTGTCTGTC	6584	False	NA	-4	True	AATAAA	-25	NA	44741721	44732336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_44732788_44732989_44733190_44734327_44734389_44736088_44736262_44737921_44738125_44740864_44741113_44741583
transcript_83239.known	chr7	-	1602	7	FSM	ENSMUSG00000003420.9	ENSMUST00000210642.2	1602	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	28.0475786239502	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGTGTGTGCATCGTT	871	False	NA	-7	True	CATAAA	-10	NA	44753169	44742487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44742780_44743205_44743323_44744583_44744854_44751333_44751610_44751825_44752096_44752426_44752698_44753063
transcript_8325.known	chr10	+	639	6	FSM	ENSMUSG00000113949.2	ENSMUST00000220669.2	639	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	267.140113049314	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCACTGGCCTTAGGCGG	NA	False	NA	NA	False	NA	NA	NA	80438705	80450601	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80438784_80444636_80444685_80445163_80445293_80446861_80446964_80448175_80448294_80450437
transcript_83254.nnic	chr7	-	796	3	NNC	ENSMUSG00000003420.9	novel	595	2	NA	NA	-2737	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_2	41.5	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCTCGTCTCTGTGTCCGT	NA	False	NA	NA	False	AATACA	-13	NA	44756012	44752258	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_44752698_44753063_44753189_44755780
transcript_83256.known	chr7	-	595	2	FSM	ENSMUSG00000003420.9	ENSMUST00000211535.2	595	2	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	0	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCTCGTCTCTGTGTCCGT	821	False	NA	NA	False	AATACA	-13	NA	44753219	44752258	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44752698_44753063
transcript_83257.known	chr7	-	1462	7	FSM	ENSMUSG00000019539.12	ENSMUST00000019683.11	1462	7	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_6	35.1362427637839	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTCTGTCTGTCTGTC	6660	False	NA	-4	True	AATAAA	-25	NA	44741645	44732336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44732788_44732989_44733190_44734327_44734389_44736088_44736262_44737921_44738125_44740864_44741113_44741519
transcript_83291.known	chr7	-	449	4	FSM	ENSMUSG00000003429.12	ENSMUST00000209838.2	449	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	12140.870543563	3415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACGTACAGAACAGGCTTG	NA	False	NA	-15	True	AATAAA	-10	NA	44772952	44771816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44771983_44772252_44772383_44772619_44772663_44772842
transcript_83292.known	chr7	-	493	5	FSM	ENSMUSG00000003429.12	ENSMUST00000211725.2	493	5	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_1	12273.9079045755	1515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTCTGGCCAATGCCCTA	NA	False	NA	-55	True	NA	NA	NA	44773759	44771856	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44771973_44772252_44772383_44772586_44772663_44772842_44772975_44773720
transcript_83318.known	chr7	-	1075	9	FSM	ENSMUSG00000110206.2	ENSMUST00000146760.7	1075	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	4.52078533000628	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTGCTGCGTGCCTGGAA	NA	False	NA	NA	False	AATAAA	-15	NA	44785856	44780612	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44780856_44781492_44781562_44781651_44781837_44783305_44783451_44783796_44783941_44784545_44784600_44785087_44785202_44785441_44785509_44785802
transcript_8334.known	chr10	+	1411	2	FSM	ENSMUSG00000113640.2	ENSMUST00000038411.5	1411	2	0	0	0	0	multi-exon	TRUE	canonical	3	56	junction_1	0	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCGTTTGCACTCAGGT	NA	False	NA	3	True	AATAAA	-15	NA	80438713	80443488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80438784_80442147
transcript_8335.known	chr10	+	795	2	FSM	ENSMUSG00000113640.2	ENSMUST00000221960.2	795	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGAGGGCAGCGGCTCAG	NA	False	NA	NA	False	NA	NA	NA	80438729	80442713	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80438784_80441972
transcript_83350.known	chr7	-	83	1	FSM	ENSMUSG00000065219.3	ENSMUST00000083285.3	83	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGCCCCTGCTTTCTTGGG	NA	False	NA	NA	False	NA	NA	NA	44776888	44776805	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44776800_44776900
transcript_83351.known	chr7	-	658	8	FSM	ENSMUSG00000074129.15	ENSMUST00000210967.2	658	8	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_2	5939.18297480076	7100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	44778144	44775345	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44775457_44775538_44775678_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
transcript_83352.known	chr7	-	562	7	FSM	ENSMUSG00000074129.15	ENSMUST00000210191.2	562	7	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_2	7369.60067703053	6361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACCCAATAAAGACTGTTT	NA	False	NA	3	True	NA	NA	NA	44778160	44775371	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44775457_44775538_44775678_44775901_44775962_44776414_44776517_44776632_44776699_44776919_44776993_44778123
transcript_83353.known	chr7	-	734	8	FSM	ENSMUSG00000074129.15	ENSMUST00000209626.2	734	8	0	0	0	0	multi-exon	FALSE	canonical	3	1166	junction_7	5527.98350879137	928	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAGAAAATCTGCAAGTT	NA	False	NA	-52	True	NA	NA	NA	44778159	44775426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44777965
transcript_83354.known	chr7	-	449	6	FSM	ENSMUSG00000074129.15	ENSMUST00000211037.2	449	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6647.57700218659	433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGCCGCCAACTAGGGAAGT	NA	False	NA	18	True	AATAAA	-38	NA	44778126	44775322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44775442_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
transcript_83355.known	chr7	-	552	7	FSM	ENSMUSG00000074129.15	ENSMUST00000209927.2	552	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	6353.08417883262	2824	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCATGCCTGCCTGGCCT	NA	False	NA	-11	True	AATAAA	-9	NA	44778126	44775351	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776919_44776993_44778123
transcript_83356.known	chr7	-	495	6	FSM	ENSMUSG00000074129.15	ENSMUST00000209711.2	495	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	7852.53911547087	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATAAAGACTGTTTGCC	NA	False	NA	6	True	NA	NA	NA	44778050	44775368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776632_44776699_44776919_44776993_44777965
transcript_83357.known	chr7	-	503	7	FSM	ENSMUSG00000074129.15	ENSMUST00000209815.2	503	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	5948.87052771831	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAGGCCAAGATGCACT	NA	False	NA	8	True	NA	NA	NA	44778126	44775581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44775662_44775901_44775962_44776132_44776252_44776414_44776517_44776632_44776699_44776919_44776993_44778123
transcript_83358.known	chr7	-	514	3	FSM	ENSMUSG00000074129.15	ENSMUST00000210134.2	514	3	0	0	0	0	multi-exon	FALSE	canonical	3	11064	junction_2	2604.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTCTCAGCACCTCTGATG	NA	False	NA	NA	False	NA	NA	NA	44778126	44776260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44776699_44776919_44776993_44778123
transcript_83359.known	chr7	-	470	4	FSM	ENSMUSG00000074129.15	ENSMUST00000209967.2	470	4	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_2	7940.61084971847	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACGGACTCCTGGTGTGAA	NA	False	NA	-14	True	AAGAAA	-30	NA	44776335	44775388	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44775457_44775538_44775678_44775901_44775962_44776132
transcript_83366.known	chr7	-	3537	17	FSM	ENSMUSG00000007833.16	ENSMUST00000209963.2	3537	17	0	0	0	0	multi-exon	TRUE	canonical	3	349	junction_15	41.3256881370413	318	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGTTTTTGTTTTGG	9333	False	NA	NA	False	NA	NA	NA	44803997	44790328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44791527_44792203_44792327_44792536_44792723_44793936_44794139_44794290_44794459_44794899_44795031_44795108_44795215_44795326_44795464_44795617_44795714_44796046_44796233_44796585_44796739_44796822_44797005_44797148_44797227_44797307_44797487_44798037_44798165_44799087_44799191_44803815
transcript_8337.known	chr10	+	444	5	FSM	ENSMUSG00000113949.2	ENSMUST00000223256.2	444	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	278.938501286574	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGCTGGGGCGCATGGTAA	NA	False	NA	NA	False	NA	NA	NA	80438725	80446947	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80438784_80444636_80444685_80445163_80445259_80445474_80445632_80446861
transcript_8339.known	chr10	-	3439	14	FSM	ENSMUSG00000020190.14	ENSMUST00000200082.5	3439	14	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_13	111.384031022692	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGCAGTGACAGCAG	9981	False	NA	-46	True	AATAAA	-14	NA	80512127	80501160	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80503167_80503446_80503491_80503799_80503965_80504355_80504551_80504778_80504875_80504988_80505045_80505131_80505237_80505463_80505538_80505729_80505810_80507392_80507491_80507569_80507672_80507761_80507850_80511657_80511775_80511914
transcript_83392.known	chr7	+	1077	10	FSM	ENSMUSG00000003423.16	ENSMUST00000210139.2	1077	10	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_1	50.5151242478703	1783	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCCAGACAATGATGCATG	NA	False	NA	21	True	AATAAA	-21	NA	44803726	44809489	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44803845_44805729_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
transcript_83393.known	chr7	+	1185	10	FSM	ENSMUSG00000003423.16	ENSMUST00000085375.13	1185	10	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	85.8518678298646	637	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTCCAGACAATGATGCAT	NA	False	NA	20	True	AATAAA	-20	NA	44803737	44809488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44803965_44805729_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
transcript_83394.known	chr7	+	1072	10	FSM	ENSMUSG00000003423.16	ENSMUST00000107811.4	1072	10	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	115.619106456406	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCCAGACAATGATGCATG	NA	False	NA	21	True	AATAAA	-21	NA	44805366	44809489	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44805480_44805729_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
transcript_834.known	chr1	+	1146	5	FSM	ENSMUSG00000097893.9	ENSMUST00000207445.2	1146	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.80277563773199	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCTCGGTCTGTCGTAAG	NA	False	NA	NA	False	NA	NA	NA	9818813	9862149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_9818871_9820582_9820631_9822673_9822790_9859880_9860006_9861349
transcript_8340.known	chr10	-	2682	4	FSM	ENSMUSG00000003348.11	ENSMUST00000003438.11	2682	4	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	9.97775303139718	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCGGGCTGCTCCTTGTTG	9117	False	NA	-1	True	AATAAA	-16	NA	80537689	80521086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80523008_80525685_80525889_80526902_80527402_80537630
transcript_83404.nic	chr7	-	1182	11	ISM	ENSMUSG00000038292.15	ENSMUST00000121017.5	2262	20	14748	0	-78	0	3prime_fragment	FALSE	canonical	3	35	junction_4	6.66033032213868	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCACAGGATGATTTCCTC	9327	False	NA	-4	True	NA	NA	NA	44839568	44833047	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_44833316_44833415_44833533_44833612_44833678_44834701_44834754_44836075_44836135_44837565_44837722_44838035_44838124_44838276_44838342_44838764_44838825_44839060_44839118_44839373
transcript_8341.known	chr10	-	314	2	FSM	ENSMUSG00000003348.11	ENSMUST00000218439.2	314	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTTGTACATTTCATCT	9144	False	NA	NA	False	CATAAA	-17	NA	80537662	80535661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80535944_80537630
transcript_83415.nnic	chr7	-	1029	9	NIC	ENSMUSG00000038292.15	novel	2262	20	NA	NA	-78	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_6	12.0078099585228	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCACAGGATGATTTCCTC	9327	False	NA	-4	True	NA	NA	NA	44839568	44833047	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_44833316_44833415_44833533_44833612_44833678_44834701_44834754_44836075_44836135_44837565_44837722_44838764_44838825_44839060_44839118_44839373
transcript_83421.nnic	chr7	-	970	8	NIC	ENSMUSG00000038292.15	novel	2262	20	NA	NA	-78	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_4	17.2129519341022	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCACAGGATGATTTCCTC	9327	False	NA	-4	True	NA	NA	NA	44839568	44833047	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_44833316_44833415_44833533_44833612_44833678_44834701_44834754_44837565_44837722_44838764_44838825_44839060_44839118_44839373
transcript_8344.nic	chr10	+	732	10	NIC	ENSMUSG00000055862.8	novel	695	9	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	8.66381719538575	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATGAGGAACAATTCTTT	NA	False	NA	2	True	ATTAAA	-15	NA	80538118	80541207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_+_80538189_80538882_80538964_80539042_80539115_80539563_80539591_80539686_80539763_80539872_80539921_80540013_80540029_80540251_80540270_80540532_80540548_80540897
transcript_83444.known	chr7	-	662	4	FSM	ENSMUSG00000030792.9	ENSMUST00000210741.2	662	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	19.9387952383176	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCAATCTCCTTTTGGTAT	8612	False	NA	-4	True	AATAAA	-17	NA	44861236	44856948	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44857323_44859536_44859627_44859754_44859896_44861179
transcript_83452.known	chr7	-	1268	9	FSM	ENSMUSG00000030798.16	ENSMUST00000033063.15	1268	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_8	25.228641957109	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTTTTTTTTTTTTTTTT	4144	False	NA	-22	True	AATAAA	-16	NA	44888539	44883064	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44883403_44884107_44884192_44884830_44885068_44885538_44885644_44886425_44886501_44886583_44886709_44887923_44887997_44888083_44888159_44888383
transcript_83459.known	chr7	+	2140	12	FSM	ENSMUSG00000030796.18	ENSMUST00000033060.14	2140	12	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	60.1724793633042	880	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAAGGGGATTTATTTGA	5430	False	NA	NA	False	AATAAA	-38	NA	44865176	44883068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44865257_44866636_44866875_44867504_44867570_44868567_44868631_44869861_44869970_44870066_44870126_44873104_44873170_44875076_44875220_44878062_44878237_44880732_44880895_44881606_44881760_44882238
transcript_83460.known	chr7	+	3396	11	FSM	ENSMUSG00000030796.18	ENSMUST00000107801.10	3396	11	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_7	23.9883304963059	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGCC	5529	False	NA	NA	False	AATAAA	-13	NA	44865275	44883043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44866875_44867504_44867570_44868567_44868631_44869861_44869970_44870066_44870126_44873104_44873170_44875076_44875220_44878062_44878237_44880732_44880895_44881606_44881760_44882238
transcript_83461.known	chr7	+	1948	11	FSM	ENSMUSG00000030796.18	ENSMUST00000097216.5	1948	11	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	103.303436535287	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCCAAAAACCCAAAGGGGA	6888	False	NA	NA	False	AATAAA	-29	NA	44866634	44883059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44866770_44867504_44867570_44868567_44868631_44869861_44869970_44870066_44870126_44873104_44873170_44875076_44875220_44878062_44878237_44880732_44880895_44881606_44881760_44882238
transcript_83462.known	chr7	-	1227	8	FSM	ENSMUSG00000030798.16	ENSMUST00000098461.10	1227	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	15.6426940630769	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTTTTTTGGTAAAAA	4419	False	NA	-13	True	AATAAA	-25	NA	44888264	44883055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44883403_44884107_44884192_44884830_44885068_44885538_44885644_44886425_44886501_44886583_44886709_44887923_44887997_44888083
transcript_83463.known	chr7	-	2541	6	FSM	ENSMUSG00000030798.16	ENSMUST00000209779.2	2541	6	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_5	4.63033476111609	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTGGT	4444	False	NA	-18	True	AATAAA	-20	NA	44888239	44883060	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44885068_44885538_44885644_44886425_44886501_44886583_44886709_44887923_44887997_44888083
transcript_83464.known	chr7	-	960	2	FSM	ENSMUSG00000030798.16	ENSMUST00000210372.2	960	2	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAAAAGAAAAAAGGAA	4463	False	NA	NA	False	NA	NA	NA	44888220	44887173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44887997_44888083
transcript_83465.known	chr7	-	1428	7	FSM	ENSMUSG00000030798.16	ENSMUST00000211373.2	1428	7	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	11.4661337085446	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTGTTGCGGAGCCTCCA	4385	False	NA	NA	False	NA	NA	NA	44888298	44883593	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44884192_44884830_44885068_44885538_44885644_44886425_44886501_44886583_44886709_44887923_44887997_44888083
transcript_83466.known	chr7	+	1241	4	FSM	ENSMUSG00000094152.6	ENSMUST00000210163.2	1241	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	2.05480466765633	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGCGTGAGGCTCGATTT	NA	False	NA	NA	False	AATAAA	-19	NA	44917573	44922789	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44917623_44917871_44918357_44921914_44922078_44922245
transcript_83469.known	chr7	-	4234	25	FSM	ENSMUSG00000038260.11	ENSMUST00000042194.10	4234	25	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_19	18.3832181168949	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGAGGGTGGGCGCTGCTG	3201	False	NA	NA	False	NA	NA	NA	44983193	44952578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44953117_44954032_44954139_44954218_44954292_44954371_44954505_44954712_44954919_44957667_44957846_44957967_44958143_44958521_44958655_44959700_44960124_44964018_44964097_44964404_44964518_44966198_44966345_44966429_44966560_44967459_44967595_44967762_44968105_44968665_44968779_44971211_44971312_44971422_44971615_44971744_44971807_44975986_44976171_44976400_44976565_44976695_44976877_44977144_44977320_44982805_44982877_44983110
transcript_8347.known	chr10	+	1196	10	FSM	ENSMUSG00000055862.8	ENSMUST00000218184.2	1196	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_9	7.62711213410245	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATGAGGAACAATTCTTT	NA	False	NA	2	True	ATTAAA	-15	NA	80538259	80541207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80538794_80538882_80538964_80539042_80539115_80539563_80539591_80539686_80539763_80539872_80539921_80540013_80540029_80540251_80540270_80540532_80540548_80540897
transcript_83471.known	chr7	-	498	5	FSM	ENSMUSG00000038260.11	ENSMUST00000210311.2	498	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	72.5857251806442	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCTTATGGGTTGCTGTC	NA	False	NA	NA	False	NA	NA	NA	44954766	44953000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44953117_44954032_44954139_44954218_44954292_44954371_44954505_44954696
transcript_83473.known	chr7	-	609	4	FSM	ENSMUSG00000038260.11	ENSMUST00000209506.2	609	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	79.7342809308239	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGCTTGGCTCCTGTGGA	NA	False	NA	-2	True	AATAAA	-23	NA	44954799	44952773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44953117_44954032_44954139_44954218_44954292_44954712
transcript_83478.known	chr7	+	653	1	FSM	ENSMUSG00000046721.12	ENSMUST00000026901.12	653	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30002	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTACACAGAATAATAAAAGT	NA	False	NA	NA	False	AAGAAA	-9	NA	44974388	44975041	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44974400_44975000
transcript_83479.known	chr7	-	625	4	FSM	ENSMUSG00000038260.11	ENSMUST00000210639.2	625	4	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_2	7.25718035235908	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTGAATCAAGCTCTGAGC	NA	False	NA	NA	False	NA	NA	NA	44954628	44952927	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44953117_44954032_44954139_44954218_44954292_44954371
transcript_83480.known	chr7	+	2411	6	FSM	ENSMUSG00000038239.12	ENSMUST00000085351.7	2411	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2.87054001888146	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGTGTCCCGAGTGGGGT	NA	False	NA	NA	False	AATAAA	-16	NA	44984713	44988398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_44986799_44986884_44986956_44987310_44987380_44987577_44987633_44988112_44988150_44988304
transcript_83482.nic	chr7	+	476	2	ISM	ENSMUSG00000038239.12	ENSMUST00000085351.7	2411	6	3054	0	2997	0	3prime_fragment	FALSE	canonical	2	4	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGTGTCCCGAGTGGGGT	854	False	NA	NA	False	AATAAA	-16	NA	44987767	44988398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_44988150_44988304
transcript_83484.known	chr7	-	4565	30	FSM	ENSMUSG00000003863.19	ENSMUST00000211067.2	4565	30	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	19.5049309293537	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTAGCTTTTGTTCTTAA	3181	False	NA	-2	True	NA	NA	NA	45016138	44988549	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991749_44991926_44992976_44993004_44993164_44993228_44996155_44996357_44996847_44996930_44997151_44997246_44997665_44997794_44997885_44998050_44999492_44999716_45001510_45001699_45002942_45003088_45004120_45004201_45004290_45004354_45004582_45004715_45005561_45005646_45005733_45005869_45005964_45006112_45007182_45007405_45008211_45008287_45008690_45008766_45009483_45009649_45009959_45010062_45010988_45011244_45016078
transcript_83487.nic	chr7	-	1802	8	ISM	ENSMUSG00000003863.19	ENSMUST00000211067.2	4565	30	23015	0	-2539	0	3prime_fragment	FALSE	canonical	3	8	junction_7	19.3422451897289	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTAGCTTTTGTTCTTAA	4447	False	NA	-2	True	NA	NA	NA	44993123	44988549	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991749_44991926_44992976
transcript_83489.nic	chr7	-	1653	8	ISM	ENSMUSG00000003863.19	ENSMUST00000211067.2	4565	30	23015	149	-2539	0	3prime_fragment	FALSE	canonical	3	8	junction_7	19.3422451897289	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGTGGTGACCAGCCT	4447	False	NA	-2	True	NA	NA	NA	44993123	44988698	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991749_44991926_44992976
transcript_83491.nnic	chr7	-	1596	7	NNC	ENSMUSG00000003863.19	novel	4565	30	NA	NA	-1084	0	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_6	15.0711276581711	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTAGCTTTTGTTCTTAA	5902	False	NA	-2	True	NA	NA	NA	44991668	44988549	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991551
transcript_83492.nnic	chr7	-	1447	7	NNC	ENSMUSG00000003863.19	novel	3899	26	NA	NA	-1084	0	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_6	15.0711276581711	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGTGGTGACCAGCCT	5902	False	NA	-2	True	NA	NA	NA	44991668	44988698	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991551
transcript_83495.known	chr7	-	735	6	FSM	ENSMUSG00000003872.10	ENSMUST00000003971.10	735	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	1.93907194296653	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGAGTGTCTTGTGTGTCTG	7942	False	NA	1	True	TTTAAA	-16	NA	45020007	45017314	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45017423_45017727_45017892_45018564_45018775_45019338_45019411_45019550_45019670_45019945
transcript_83498.nic	chr7	-	1435	5	NIC	ENSMUSG00000003872.10	novel	735	6	NA	NA	-27	0	intron_retention	FALSE	canonical	2	8	junction_1	1.22474487139159	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGAGTGTCTTGTGTGTCTG	7915	False	NA	1	True	TTTAAA	-16	NA	45020034	45017314	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_45017423_45017727_45018775_45019338_45019411_45019550_45019670_45019945
transcript_83502.nnic	chr7	+	594	3	Antisense	novelGene_ENSMUSG00000003863.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0.5	11	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGGTGATGTAGCCTTG	4909	False	NA	NA	False	AATAAA	-18	NA	45002663	45003574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr7_+_45002810_45002921_45003035_45003239
transcript_83506.known	chr7	-	1467	4	FSM	ENSMUSG00000003863.19	ENSMUST00000211098.2	1467	4	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	3.55902608401044	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTAGCTTTTGTTCTTA	6986	False	NA	-3	True	NA	NA	NA	44990584	44988550	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44989442_44989612_44989685_44989998_44990411_44990492
transcript_83511.known	chr7	+	714	3	FSM	ENSMUSG00000091510.5	ENSMUST00000058665.10	714	3	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGAAGGAGGGTCCTGGT	59	False	NA	NA	False	AATAAA	-17	NA	45016656	45017372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_45016785_45016785_45016957_45016957
transcript_83512.known	chr7	-	1060	3	FSM	ENSMUSG00000003863.19	ENSMUST00000210844.2	1060	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	26.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAAGCTCTGGTGGTGAC	7384	False	NA	-8	True	NA	NA	NA	44990186	44988704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_44989505_44989612_44989685_44989998
transcript_83523.known	chr7	-	1735	10	FSM	ENSMUSG00000063511.12	ENSMUST00000074575.11	1735	10	0	0	0	0	multi-exon	FALSE	canonical	3	1192	junction_9	143.840189098875	7466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGATGTCTTACTGCACT	9041	False	NA	0	True	AATAAA	-25	NA	45045166	45025876	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45026703_45026779_45026868_45030140_45030243_45033227_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044932
transcript_83524.known	chr7	-	3035	11	FSM	ENSMUSG00000063511.12	ENSMUST00000211290.2	3035	11	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	571.982875617793	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGTGGGCATGTGATGTC	9091	False	NA	-10	True	AATAAA	-15	NA	45045116	45025886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45026703_45026779_45026868_45030140_45030243_45031248_45032609_45033227_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044932
transcript_83525.known	chr7	+	1963	3	FSM	ENSMUSG00000074121.4	ENSMUST00000058879.8	1963	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	4	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGGCTCCGCCTTGAA	637	False	NA	NA	False	NA	NA	NA	45063118	45066603	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_45063213_45064154_45064279_45064858
transcript_83526.nnic	chr7	+	1786	3	NNC	ENSMUSG00000074121.4	novel	989	3	NA	NA	-28	-523	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	11	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGTGTTGTGGTATGTAC	818	False	NA	NA	False	NA	NA	NA	45063299	45066080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_45063740_45064154_45064279_45064858
transcript_83527.known	chr7	+	3678	16	FSM	ENSMUSG00000003865.17	ENSMUST00000003964.17	3678	16	0	0	0	0	multi-exon	TRUE	canonical	3	89	junction_1	61.1041369757855	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGGCTGGACATAAGCTC	1027	False	NA	25	True	AATACA	-21	NA	45084267	45106043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_45084595_45085955_45086138_45087525_45087718_45088902_45089089_45089328_45089474_45091846_45091965_45092339_45092461_45092951_45093059_45094055_45094116_45094202_45094282_45097321_45097436_45097676_45097804_45100986_45101083_45101174_45101339_45104245_45104327_45104464
transcript_83548.known	chr7	+	480	5	FSM	ENSMUSG00000003865.17	ENSMUST00000210715.2	480	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	111.656560487953	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAGCAGAGCCGGCGACA	NA	False	NA	NA	False	NA	NA	NA	45097028	45101251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_45097078_45097321_45097453_45097676_45097804_45100986_45101083_45101174
transcript_8355.known	chr10	+	763	9	FSM	ENSMUSG00000055862.8	ENSMUST00000095426.5	763	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	8.48528137423857	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGGGAGATGGGTTTGTG	NA	False	NA	-85	True	NA	NA	NA	80538557	80541120	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80538794_80538882_80538964_80539042_80539115_80539563_80539591_80539686_80539763_80540013_80540029_80540251_80540270_80540532_80540548_80540897
transcript_83555.known	chr7	-	1834	15	FSM	ENSMUSG00000003868.15	ENSMUST00000107771.12	1834	15	0	0	0	0	multi-exon	FALSE	canonical	3	1951	junction_14	206.139144605714	7145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTCTGCTGTGTCCTCAG	9182	False	NA	-4	True	TATAAA	-15	NA	45084047	45071321	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45071430_45071515_45071631_45071808_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080799_45083675
transcript_83556.known	chr7	-	846	9	FSM	ENSMUSG00000003868.15	ENSMUST00000211666.2	846	9	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_8	800.022880532176	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTCCGCTCTTCCCTCAC	9096	False	NA	NA	False	NA	NA	NA	45084133	45074374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080799_45083675_45083781_45084043
transcript_83559.known	chr7	-	968	4	FSM	ENSMUSG00000050708.17	ENSMUST00000094434.13	968	4	0	0	0	0	multi-exon	TRUE	canonical	3	56898	junction_1	7359.57672393974	67020	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	-19	True	AATAAA	-17	NA	45109308	45107367	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45107708_45107958_45108085_45108507_45108655_45108953
transcript_83562.known	chr7	-	710	4	FSM	ENSMUSG00000050708.17	ENSMUST00000210375.2	710	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	30194.0672355054	2724	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGTGTTTTTTCTATAT	NA	False	NA	-20	True	AATAAA	-16	NA	45108845	45107368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45107708_45107958_45108085_45108507_45108655_45108747
transcript_83568.known	chr7	-	825	3	FSM	ENSMUSG00000050708.17	ENSMUST00000211500.2	825	3	0	0	0	0	multi-exon	FALSE	canonical	3	56898	junction_1	6244.5	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGCTTTTTGAGACAGC	NA	False	NA	-40	True	AGTAAA	-2	NA	45108887	45107388	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45107708_45107958_45108085_45108507
transcript_83569.known	chr7	-	943	4	FSM	ENSMUSG00000050708.17	ENSMUST00000210106.2	943	4	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	31741.9424561398	3749	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGTGTTTTTTCTATAT	NA	False	NA	-20	True	AATAAA	-16	NA	45109263	45107368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45107708_45107958_45108106_45108507_45108655_45108953
transcript_83570.known	chr7	-	2111	13	FSM	ENSMUSG00000030824.18	ENSMUST00000033096.16	2111	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	147.246014848922	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATCCTGCCCTCTTCCAA	NA	False	NA	-4	True	AATAAA	-19	NA	45159750	45142531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45143374_45143540_45143626_45144041_45144213_45144476_45144570_45144645_45144739_45144978_45145038_45147823_45147915_45148148_45148335_45149225_45149330_45151006_45151140_45152601_45152710_45159129_45159272_45159746
transcript_8359.known	chr10	-	4805	31	FSM	ENSMUSG00000020198.9	ENSMUST00000020420.9	4805	31	0	0	0	0	multi-exon	FALSE	canonical	1	82	junction_14	55.4957555934586	475	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTTGTGTCCCCAT	9208	False	NA	-2	True	ATTAAA	-14	NA	80578098	80542789	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80543818_80544291_80544372_80544580_80544703_80545034_80545121_80545233_80545323_80545600_80545791_80546253_80546302_80546522_80546667_80547945_80548042_80548429_80548502_80548598_80548765_80549390_80549465_80549806_80549995_80550080_80550157_80550941_80551014_80551704_80551847_80552307_80552454_80553532_80553765_80554842_80555223_80555500_80555647_80556953_80557003_80557424_80557475_80558746_80558797_80559366_80559441_80559524_80559665_80562887_80563018_80563715_80563824_80565811_80565893_80566707_80566789_80568684_80568781_80577729
transcript_836.known	chr1	+	264	4	FSM	ENSMUSG00000097893.9	ENSMUST00000209020.2	264	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0.942809041582063	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGGGACTCCTGAGGAG	NA	False	NA	NA	False	NA	NA	NA	9818850	9840976	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_9818871_9820582_9820631_9822673_9822790_9840896
transcript_83604.known	chr7	-	5323	7	FSM	ENSMUSG00000011382.9	ENSMUST00000011526.7	5323	7	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_4	6.73300329224139	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCTTCCAATTCAGTGTT	NA	False	NA	-9	True	ACTAAA	-4	NA	45138229	45120410	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45124800_45125028_45125177_45128432_45128558_45131212_45131466_45136164_45136329_45137483_45137596_45138097
transcript_83639.known	chr7	-	2333	3	FSM	ENSMUSG00000040435.13	ENSMUST00000042105.11	2333	3	0	0	0	0	multi-exon	FALSE	canonical	3	356	junction_2	34	622	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTACGTGTGTTCTTTAT	3861	False	NA	44	True	AATAAA	-24	NA	45175692	45172340	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45172747_45173162_45174816_45175418
transcript_83640.known	chr7	-	801	6	FSM	ENSMUSG00000003873.12	ENSMUST00000211365.2	801	6	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	1143.13684220219	877	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTCCCTTGTCCGCCCA	9977	False	NA	-2	True	AATAAA	-22	NA	45116260	45111120	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45111387_45112822_45112928_45114612_45114749_45115400_45115548_45115643_45115696_45116165
transcript_83641.known	chr7	-	1100	5	FSM	ENSMUSG00000003873.12	ENSMUST00000210392.2	1100	5	0	0	0	0	multi-exon	FALSE	canonical	3	3046	junction_1	70.515955641259	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCCTCCCACTGCCT	9982	False	NA	NA	False	NA	NA	NA	45116255	45111290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45111391_45112822_45112928_45114612_45114749_45115400_45115548_45115643
transcript_83647.nnic	chr7	-	658	3	Antisense	novelGene_ENSMUSG00000040428.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGAGTGCTTGCTGCCCTT	1873	False	NA	NA	False	NA	NA	NA	45187928	45185035	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr7_-_45185366_45187039_45187270_45187830
transcript_83649.nnic	chr7	-	614	3	Antisense	novelGene_ENSMUSG00000040428.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.5	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGAGTGCTTGCTGCCCTT	1672	False	NA	NA	False	NA	NA	NA	45188129	45185035	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr7_-_45185366_45187039_45187270_45188075
transcript_83652.nnic	chr7	-	600	3	Antisense	novelGene_ENSMUSG00000040428.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	0.5	21	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGAGTGCTTGCTGCCCTT	1873	False	NA	NA	False	NA	NA	NA	45187928	45185035	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr7_-_45185366_45187097_45187270_45187830
transcript_83654.nnic	chr7	-	556	3	Antisense	novelGene_ENSMUSG00000040428.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	17	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGAGTGCTTGCTGCCCTT	1672	False	NA	NA	False	NA	NA	NA	45188129	45185035	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr7_-_45185366_45187097_45187270_45188075
transcript_83656.nnic	chr7	-	828	3	NNC	ENSMUSG00000110144.2	novel	530	2	NA	NA	-9788	52	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGTGCAATCATTACTG	1302	False	NA	NA	False	NA	NA	NA	45210827	45199905	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_45200412_45208810_45208870_45210564
transcript_83657.known	chr7	-	530	2	FSM	ENSMUSG00000110144.2	ENSMUST00000210460.2	530	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGAGCCCTGTTAGTGAC	9401	False	NA	NA	False	NA	NA	NA	45201039	45199957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45200412_45200963
transcript_83658.known	chr7	+	646	3	FSM	ENSMUSG00000040428.20	ENSMUST00000210797.2	646	3	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	3	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTTGTGACATTGTGTT	NA	False	NA	8	True	AATAAA	-17	NA	45199258	45203653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_45199390_45202668_45202719_45203188
transcript_83659.known	chr7	+	476	2	FSM	ENSMUSG00000040428.20	ENSMUST00000211348.2	476	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAACACTGTCCAAAATTG	NA	False	NA	-58	True	NA	NA	NA	45199312	45203587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_45199390_45203188
transcript_83662.known	chr7	+	1400	9	FSM	ENSMUSG00000030825.20	ENSMUST00000107752.12	1400	9	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_3	205.455591308682	1426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGAGTGGTCGTGTCCT	NA	False	NA	10	True	NA	NA	NA	45204316	45216745	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_45204491_45205478_45205518_45205736_45205820_45207031_45207099_45208804_45208897_45212338_45212444_45215378_45215447_45215543_45215641_45216070
transcript_83669.known	chr7	+	1315	9	FSM	ENSMUSG00000030825.20	ENSMUST00000210997.2	1315	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	257.274385384554	821	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCTTGGAGTGGTCGTGT	NA	False	NA	7	True	NA	NA	NA	45205467	45216742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_45205518_45205736_45205820_45207031_45207099_45208449_45208531_45208804_45208897_45212338_45212444_45215378_45215447_45215543_45215641_45216070
transcript_83672.known	chr7	+	410	5	FSM	ENSMUSG00000030825.20	ENSMUST00000209745.2	410	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	255.351106322256	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCGTTTTCCTGGCCTCTG	NA	False	NA	NA	False	NA	NA	NA	45211530	45216111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_45211630_45212338_45212444_45215378_45215447_45215543_45215641_45216070
transcript_83677.known	chr7	+	427	3	FSM	ENSMUSG00000030825.20	ENSMUST00000211029.2	427	3	0	0	0	0	multi-exon	FALSE	canonical	3	572	junction_1	8.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCGAGTCAACTGGTAAACT	NA	False	NA	NA	False	NA	NA	NA	45208629	45215433	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_45208897_45212338_45212444_45215378
transcript_83686.known	chr7	-	951	3	FSM	ENSMUSG00000030827.6	ENSMUST00000033099.6	951	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	4.5	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAACTGAGATATGTTTC	NA	False	NA	NA	False	AATAAA	-29	NA	45264914	45263309	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45263735_45264289_45264394_45264492
transcript_8369.known	chr10	-	533	5	FSM	ENSMUSG00000035278.10	ENSMUST00000219378.2	533	5	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_4	475.904664822693	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTTGGACTGACCCTCT	NA	False	NA	NA	False	NA	NA	NA	80634128	80632259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80632357_80632424_80632489_80632565_80632657_80633606_80633674_80633914
transcript_83694.known	chr7	-	1542	2	FSM	ENSMUSG00000110357.2	ENSMUST00000211533.2	1542	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGAAAAGGACCAAG	NA	False	NA	NA	False	NA	NA	NA	45288189	45285103	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45286563_45288106
transcript_83696.nnic	chr7	-	492	2	NNC	ENSMUSG00000110357.2	novel	1542	2	NA	NA	-5680	-2965	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGAGGTGGTCTATCTCC	4342	False	NA	NA	False	ATTAAA	-13	NA	45293869	45288068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_45288304_45293612
transcript_83698.known	chr7	+	1758	7	FSM	ENSMUSG00000070564.16	ENSMUST00000182750.10	1758	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.46249406456535	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTGTGTCTACAGATCAC	8198	False	NA	NA	False	AATAAA	-16	NA	45333445	45343977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_45333923_45336000_45336250_45340470_45340660_45340835_45340986_45341307_45341362_45341764_45341846_45343419
transcript_83703.known	chr7	+	1585	9	FSM	ENSMUSG00000003273.15	ENSMUST00000003360.10	1585	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	9.28708781050335	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCACTTCTTTCTGCCTTA	9284	False	NA	76	True	ATTAAA	-21	NA	45349266	45354106	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_45349764_45349849_45349925_45350647_45350791_45351857_45352044_45352256_45352353_45352485_45352559_45352882_45353038_45353136_45353303_45353912
transcript_83704.nic	chr7	+	1190	7	ISM	ENSMUSG00000003273.15	ENSMUST00000003360.10	1585	9	1131	73	-42	0	3prime_fragment	FALSE	canonical	3	16	junction_2	3.86221007541882	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGTTTCTCGGTGGTTTA	NA	False	NA	3	True	ATTAAA	-14	NA	45350397	45354033	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_45350791_45351857_45352044_45352256_45352353_45352485_45352559_45352882_45353038_45353136_45353303_45353912
transcript_83707.nic	chr7	+	1323	6	NIC	ENSMUSG00000003273.15	novel	1585	9	NA	NA	-42	0	intron_retention	FALSE	canonical	3	16	junction_2	4.16653333119993	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGTTTCTCGGTGGTTTA	NA	False	NA	3	True	ATTAAA	-14	NA	45350397	45354033	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_45350791_45351857_45352044_45352256_45352559_45352882_45353038_45353136_45353303_45353912
transcript_83713.known	chr7	-	3548	7	FSM	ENSMUSG00000057342.16	ENSMUST00000107737.11	3548	7	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_6	23.5141801189552	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAAAAGCTGGTCTTCAA	3162	False	NA	NA	False	AATAAA	-20	NA	45367426	45358890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45361236_45361481_45361598_45361680_45361776_45361879_45362030_45362683_45363153_45366416_45366488_45367124
transcript_83717.known	chr7	+	1027	6	FSM	ENSMUSG00000059070.17	ENSMUST00000209287.2	1027	6	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_1	3241.25016621673	12763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGTCCTCTGTGTTCAT	6008	False	NA	9	True	AATAAA	-16	NA	45367580	45370252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_45368005_45368676_45368764_45368952_45369061_45369343_45369443_45369717_45369912_45370137
transcript_83724.known	chr7	-	2968	6	FSM	ENSMUSG00000057342.16	ENSMUST00000072836.7	2968	6	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_5	32.4678302324008	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCCTTCACCCCTTCCAC	5957	False	NA	-24	True	AATAAA	-17	NA	45364631	45359708	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45361236_45361481_45361598_45361680_45361776_45361879_45362030_45362683_45363153_45364020
transcript_83725.known	chr7	-	2577	6	FSM	ENSMUSG00000057342.16	ENSMUST00000210060.2	2577	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	47.003829631212	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCGACATCCCTTTCAGTT	3262	False	NA	-6	True	AATAAA	-35	NA	45367326	45359690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45361236_45361481_45361598_45361680_45361776_45361879_45362030_45362683_45363153_45367124
transcript_83727.known	chr7	+	552	5	FSM	ENSMUSG00000059070.17	ENSMUST00000211061.2	552	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3596.15853203109	1396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGATGATGGTCCTCTGTG	5950	False	NA	4	True	AATAAA	-11	NA	45367522	45370247	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_45367564_45368952_45369061_45369343_45369443_45369717_45369912_45370137
transcript_83730.known	chr7	+	1156	3	FSM	ENSMUSG00000059824.13	ENSMUST00000211513.2	1156	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	20	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCATCAACACAATCCTGA	NA	False	NA	NA	False	NA	NA	NA	45354692	45359538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_45355187_45357683_45357896_45359088
transcript_83737.known	chr7	+	679	6	FSM	ENSMUSG00000059070.17	ENSMUST00000072503.13	679	6	0	0	0	0	multi-exon	FALSE	canonical	3	6098	junction_1	973.20817916826	177274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTGTGTTCATTCATGAA	5922	False	NA	16	True	AATAAA	-23	NA	45367494	45370259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_45367564_45368676_45368764_45368952_45369061_45369343_45369443_45369717_45369912_45370137
transcript_83738.known	chr7	+	1837	4	FSM	ENSMUSG00000059824.13	ENSMUST00000080885.12	1837	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	14.613540144522	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCCAAGCTGGGTGCTGC	NA	False	NA	NA	False	NA	NA	NA	45354511	45359627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_45355187_45356029_45356441_45357683_45357896_45359088
transcript_83739.known	chr7	+	834	4	FSM	ENSMUSG00000059070.17	ENSMUST00000211425.2	834	4	0	0	0	0	multi-exon	FALSE	canonical	3	7563	junction_3	587.15263962808	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAACCCTGGATCTTAACTG	7113	False	NA	-34	True	NA	NA	NA	45368685	45370209	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_45368764_45368952_45369443_45369717_45369912_45370137
transcript_83740.known	chr7	+	535	5	FSM	ENSMUSG00000059070.17	ENSMUST00000209693.2	535	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	3268.24428210316	6201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCCTCTGTGTTCATTCA	5963	False	NA	12	True	AATAAA	-19	NA	45367535	45370255	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_45367564_45368676_45368764_45368952_45369061_45369717_45369912_45370137
transcript_83741.known	chr7	+	402	4	FSM	ENSMUSG00000059070.17	ENSMUST00000211435.2	402	4	0	0	0	0	multi-exon	FALSE	canonical	3	8095	junction_2	387.345094485812	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCTTTGACCAGCTGGCC	7060	False	NA	NA	False	NA	NA	NA	45368632	45369781	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_45368764_45368952_45369061_45369343_45369443_45369717
transcript_83742.nic	chr7	+	1216	9	NIC	ENSMUSG00000062044.17	novel	4997	15	NA	NA	-408	800	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	1.21834929310112	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTGGCCTCAACCTTGAG	1809	False	NA	NA	False	GGGGCT	-35	NA	45436763	45442810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_45436895_45437069_45437179_45437327_45437447_45440298_45440387_45440718_45440868_45441734_45441820_45441900_45442023_45442114_45442265_45442547
transcript_83746.nic	chr7	-	1118	7	NIC	ENSMUSG00000003271.18	novel	1193	7	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	5.39804491356722	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCTCCTCTGTGCTGACT	3495	False	NA	NA	False	AATAAA	-17	NA	45392200	45379406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_45379624_45380661_45380843_45383042_45383138_45383410_45383538_45384558_45384768_45391477_45391621_45392054
transcript_83747.nnic	chr7	-	1236	7	NNC	ENSMUSG00000003271.18	novel	1193	7	NA	NA	-7213	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	2.80871659105879	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCTCCTCTGTGCTGACT	7623	False	NA	NA	False	AATAAA	-17	NA	45399383	45379406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_45379624_45380661_45380843_45383042_45383138_45383410_45383538_45384558_45384768_45391477_45391621_45399119
transcript_83749.known	chr7	-	1193	7	FSM	ENSMUSG00000003271.18	ENSMUST00000075571.16	1193	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	5.39804491356722	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCTCCTCTGTGCTGACT	NA	False	NA	NA	False	AATAAA	-17	NA	45409036	45379406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45379624_45380661_45380843_45383042_45383138_45383410_45383538_45384558_45384768_45391477_45391621_45408815
transcript_83750.nic	chr7	-	883	5	ISM	ENSMUSG00000003271.18	ENSMUST00000210754.2	1242	6	7086	-17	7086	0	3prime_fragment	FALSE	canonical	2	9	junction_2	2.91547594742265	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCTCCTCTGTGCTGACT	9943	False	NA	NA	False	AATAAA	-17	NA	45384821	45379406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_45379624_45380661_45380843_45383042_45383138_45383410_45383538_45384558
transcript_83755.nnic	chr7	+	760	3	NNC	ENSMUSG00000062044.17	novel	5051	16	NA	NA	12913	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	1	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGCCTGTGTGTATTTGG	1094	False	NA	19	True	AAAAAG	-25	NA	45450084	45453568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_45450194_45450335_45450474_45453055
transcript_83757.known	chr7	-	1512	12	FSM	ENSMUSG00000003269.18	ENSMUST00000209245.2	1512	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	132.007888569692	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTATTTGTAATTAACATG	3171	False	NA	NA	False	NA	NA	NA	45463726	45457062	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45457273_45457356_45457512_45457599_45457672_45457796_45457874_45459546_45459663_45459994_45460144_45460277_45460391_45460952_45461034_45461603_45461723_45462270_45462338_45462432_45462581_45463521
transcript_83761.known	chr7	-	1898	7	FSM	ENSMUSG00000053801.19	ENSMUST00000107723.9	1898	7	0	0	0	0	multi-exon	FALSE	canonical	3	447	junction_1	34.207292919623	758	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGTCCTCTGAGCTTCTT	8634	False	NA	-4	True	AATAAA	-31	NA	45480213	45474650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45475518_45476564_45476763_45476949_45477093_45477203_45477418_45479405_45479569_45479715_45479834_45480018
transcript_83767.known	chr7	+	1599	5	FSM	ENSMUSG00000002778.15	ENSMUST00000002855.14	1599	5	0	0	0	0	multi-exon	TRUE	canonical	3	208	junction_1	16.5378354085412	2562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCTGTTCCCTGCCCGCT	3944	False	NA	17	True	AATAAA	-21	NA	45522195	45533156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_45522526_45523182_45523284_45523466_45523626_45530923_45531177_45532400
transcript_83771.known	chr7	-	1783	6	FSM	ENSMUSG00000053801.19	ENSMUST00000209484.2	1783	6	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_5	183.663387750526	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACAAGTCCTCTGAGCTT	8628	False	NA	-7	True	AATAAA	-28	NA	45480219	45474653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45475518_45476564_45476763_45476949_45477093_45477203_45477418_45479405_45479569_45480018
transcript_83773.known	chr7	+	1350	5	FSM	ENSMUSG00000002778.15	ENSMUST00000211716.2	1350	5	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_4	97.5256376549264	850	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGCTGTTCCCTGCCC	3997	False	NA	14	True	AATAAA	-18	NA	45522248	45533153	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_45522526_45523182_45523284_45523466_45523626_45530923_45530984_45532400
transcript_83779.known	chr7	+	832	5	FSM	ENSMUSG00000002778.15	ENSMUST00000211234.2	832	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	102.020524895729	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGTTTTTGATTCTGATG	4299	False	NA	15	True	AAGAAA	-25	NA	45522550	45532671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_45522599_45523182_45523284_45523466_45523626_45530923_45531177_45532400
transcript_83789.known	chr7	-	967	5	FSM	ENSMUSG00000040231.17	ENSMUST00000039049.16	967	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	22.466641938661	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGTCCTGTCTGTTCCTC	NA	False	NA	-3	True	AGTAAA	-29	NA	45546138	45536268	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45536550_45536790_45536931_45538035_45538274_45545114_45545316_45546031
transcript_83793.known	chr7	-	722	4	FSM	ENSMUSG00000040231.17	ENSMUST00000120299.4	722	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	18.0616229121921	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACAGCTAAACAGCCTGT	NA	False	NA	-64	True	NA	NA	NA	45546094	45536329	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45536550_45538035_45538274_45545114_45545316_45546031
transcript_83798.known	chr7	+	2297	8	FSM	ENSMUSG00000002781.20	ENSMUST00000069772.16	2297	8	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	17.4414472344658	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGAGTAGTGTGGCTGC	5492	False	NA	7	True	AATAAA	-14	NA	45546364	45566837	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_45546526_45546858_45547091_45549055_45549161_45556341_45556537_45557530_45557662_45558745_45559026_45565506_45565697_45565834
transcript_83799.known	chr7	+	2026	7	FSM	ENSMUSG00000002781.20	ENSMUST00000209292.2	2026	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	23.5401548187111	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGAGTAGTGTGGCTGC	5632	False	NA	7	True	AATAAA	-14	NA	45546504	45566837	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_45546526_45546858_45547091_45549055_45549161_45556341_45556537_45558745_45559026_45565506_45565697_45565834
transcript_8380.known	chr10	-	1260	6	FSM	ENSMUSG00000035278.10	ENSMUST00000036805.7	1260	6	0	0	0	0	multi-exon	FALSE	canonical	3	943	junction_2	140.821021158064	3645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80634460	80631932	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80632357_80632424_80632489_80632565_80632657_80633606_80633674_80633743_80633812_80633914
transcript_83805.known	chr7	+	2466	7	FSM	ENSMUSG00000002781.20	ENSMUST00000209350.2	2466	7	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	6.94422221866655	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACTCTGGAGTAGTGTGG	5652	False	NA	3	True	AATAAA	-10	NA	45546524	45566833	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_45547091_45549055_45549161_45556341_45556537_45557530_45557662_45558745_45559026_45565506_45565697_45565834
transcript_83806.known	chr7	-	784	5	FSM	ENSMUSG00000040212.13	ENSMUST00000164119.3	784	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	25.7730479377197	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGACTCGGCTCCTCTT	4911	False	NA	NA	False	AATAAA	-15	NA	45570275	45567451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45567660_45568741_45568883_45569358_45569462_45569712_45569829_45570059
transcript_83807.known	chr7	-	736	5	FSM	ENSMUSG00000040212.13	ENSMUST00000038876.13	736	5	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_4	7.77817459305202	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCGGCTCCTCTTCCTTC	4358	False	NA	NA	False	AATAAA	-20	NA	45570828	45567446	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45567660_45568741_45568883_45569358_45569462_45569712_45569829_45570665
transcript_83808.known	chr7	-	380	4	FSM	ENSMUSG00000040212.13	ENSMUST00000210939.2	380	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	25.6168347424545	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCTTCGGTTACTGCTTC	4460	False	NA	NA	False	NA	NA	NA	45570726	45567584	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45567660_45568741_45568883_45569358_45569462_45570665
transcript_83809.known	chr7	+	2598	15	FSM	ENSMUSG00000040189.19	ENSMUST00000210039.3	2598	15	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_9	4.94923205752	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTTCCTACAAGTGTG	3132	False	NA	12	True	AATAAA	-23	NA	45573638	45598387	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_45573811_45573921_45574014_45577947_45578048_45578490_45578681_45585694_45585818_45585979_45586094_45589078_45589147_45591083_45591272_45591482_45591618_45592001_45592085_45592184_45592354_45596806_45596971_45597046_45597145_45597405_45597485_45597564
transcript_8381.known	chr10	-	1261	5	FSM	ENSMUSG00000035278.10	ENSMUST00000219767.2	1261	5	0	0	0	0	multi-exon	FALSE	canonical	3	943	junction_2	144.890260197157	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCCATGTCGGAATGAGT	NA	False	NA	-6	True	AATAAA	-14	NA	80634394	80631935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80632357_80632424_80632489_80632565_80632657_80633606_80633812_80633914
transcript_83811.known	chr7	+	1078	5	FSM	ENSMUSG00000040189.19	ENSMUST00000211367.2	1078	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	8.39642781187333	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTTTGGTCATGGTG	3160	False	NA	NA	False	NA	NA	NA	45573666	45581037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_45573811_45573921_45574014_45577947_45578048_45578490_45578681_45580485
transcript_83816.known	chr7	-	257	2	FSM	ENSMUSG00000030834.8	ENSMUST00000210962.2	257	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGATTCCTCATCCTAAAAC	NA	False	NA	NA	False	ATTAAA	-19	NA	45622743	45616982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_45617145_45622648
transcript_83817.known	chr7	+	4257	31	FSM	ENSMUSG00000030835.7	ENSMUST00000033121.7	4257	31	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_14	37.3234510730184	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATAGTGTGGGGTGCATAC	8093	False	NA	29	True	AATAAA	-29	NA	45683121	45733636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_45683397_45686982_45687073_45687966_45688013_45690892_45690994_45691955_45692063_45693654_45693728_45694684_45694838_45695272_45695411_45696332_45696423_45699693_45699800_45699969_45700121_45703925_45704101_45706018_45706161_45706500_45706633_45707839_45707977_45710302_45710391_45711192_45711257_45712390_45712487_45715585_45715805_45715883_45715967_45717802_45717963_45718095_45718223_45719346_45719461_45720198_45720327_45721921_45722064_45725498_45725583_45727449_45727561_45728914_45729017_45730818_45730939_45732658_45732752_45733026
transcript_83819.nic	chr7	-	912	6	ISM	ENSMUSG00000030838.21	ENSMUST00000176371.2	1865	20	28475	-301	-69	0	3prime_fragment	FALSE	canonical	0	0	junction_2	4.56070170039655	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTGGGGGTGAATTGTG	NA	False	NA	NA	False	AATAAA	-21	NA	45851263	45844773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_45845159_45846619_45846676_45847776_45847887_45850397_45850498_45850792_45850847_45851056
transcript_8382.known	chr10	-	772	3	FSM	ENSMUSG00000035278.10	ENSMUST00000218036.2	772	3	0	0	0	0	multi-exon	FALSE	canonical	3	1230	junction_2	7.5	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80633722	80631932	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80632357_80632424_80632657_80633606
transcript_83824.known	chr7	-	1465	11	FSM	ENSMUSG00000030839.13	ENSMUST00000033127.12	1465	11	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_10	7.18609768928867	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTCTGGCAGATTATGGG	NA	False	NA	-10	True	AATAAA	-35	NA	46289231	46092577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_46092960_46165091_46165129_46240030_46240198_46264041_46264201_46268119_46268183_46270984_46271099_46275632_46275694_46282083_46282179_46283178_46283335_46284844_46284981_46289136
transcript_8383.known	chr10	-	537	3	FSM	ENSMUSG00000035278.10	ENSMUST00000219959.2	537	3	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_2	517	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCATGTCGGAATGAGTGG	NA	False	NA	-4	True	AATAAA	-16	NA	80632651	80631933	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80632357_80632424_80632453_80632565
transcript_83838.known	chr7	-	662	4	FSM	ENSMUSG00000030839.13	ENSMUST00000156147.8	662	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	45.5802101306648	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGGGGTGTGAGAGCGAG	NA	False	NA	-77	True	NA	NA	NA	46252666	46092644	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_46092960_46165091_46165129_46240030_46240198_46252523
transcript_8384.known	chr10	-	734	4	FSM	ENSMUSG00000035278.10	ENSMUST00000220093.2	734	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	518.336441576961	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTTAATAAAGGTACCTC	NA	False	NA	-31	True	NA	NA	NA	80633539	80631960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80632357_80632424_80632489_80632565_80632657_80633356
transcript_83847.known	chr7	-	1849	13	FSM	ENSMUSG00000006763.15	ENSMUST00000209797.2	1849	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	196.030609854686	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGCATCGGGATGATGGT	NA	False	NA	-12	True	AATAAA	-24	NA	46360065	46338727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_46338880_46339226_46339320_46342202_46342400_46348787_46348977_46349059_46349143_46349763_46349818_46351204_46351713_46351825_46351917_46352044_46352105_46353437_46353518_46356416_46356501_46358287_46358402_46359921
transcript_83848.known	chr7	-	555	4	FSM	ENSMUSG00000040026.9	ENSMUST00000006956.9	555	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	7.31816613336672	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCGCTGTCACTGTTG	NA	False	NA	NA	False	AATAAA	-16	NA	46365124	46361421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_46361689_46362012_46362152_46364433_46364529_46365070
transcript_83849.known	chr7	-	494	3	FSM	ENSMUSG00000040026.9	ENSMUST00000211660.2	494	3	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_2	3.5	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGTCGCTGTCACTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	46363173	46361422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_46361689_46362012_46362152_46363084
transcript_83850.nnic	chr7	-	488	3	NNC	ENSMUSG00000040026.9	novel	555	4	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	9.5	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCGCTGTCACTGTTG	NA	False	NA	NA	False	AATAAA	-16	NA	46363212	46361421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_46361689_46362012_46362152_46363130
transcript_83853.known	chr7	+	652	4	FSM	ENSMUSG00000057465.6	ENSMUST00000210769.2	652	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.471404520791032	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGCCTGCGTATCTGTC	3403	False	NA	NA	False	AATAAA	-19	NA	46401213	46403737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_46401289_46401710_46401806_46402841_46402981_46403394
transcript_83854.known	chr7	+	606	4	FSM	ENSMUSG00000057465.6	ENSMUST00000075982.4	606	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.816496580927726	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGCCTGCGTATCTGTC	3446	False	NA	NA	False	AATAAA	-19	NA	46401256	46403737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_46401289_46401713_46401806_46402841_46402981_46403394
transcript_83856.known	chr7	+	511	3	FSM	ENSMUSG00000057465.6	ENSMUST00000210272.2	511	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCTGAGCCTGCGTATCT	3446	False	NA	NA	False	AATAAA	-16	NA	46401256	46403734	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_46401289_46402841_46402981_46403394
transcript_83857.known	chr7	-	4953	23	FSM	ENSMUSG00000014418.17	ENSMUST00000014562.14	4953	23	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_22	12.9471270625399	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGATATGAGATTTACTT	NA	False	NA	2	True	AATAAA	-26	NA	46445451	46409889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_46410875_46412366_46412638_46414242_46414350_46416517_46416632_46417456_46417577_46418360_46418517_46418716_46418838_46421030_46421606_46421895_46421968_46422543_46422694_46424237_46424362_46425188_46425376_46426299_46426459_46427444_46427624_46428495_46428585_46432566_46432639_46432894_46433108_46435933_46436068_46437596_46437790_46438351_46438417_46438512_46438624_46440340_46440497_46444851
transcript_83860.nic	chr7	+	3092	16	NIC	ENSMUSG00000006599.14	novel	2736	15	NA	NA	-287	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	187.878920821067	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCTCTCTTGGAGTCTT	4419	False	NA	4	True	AATAAA	-15	NA	46445239	46473224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_46445713_46446820_46446890_46451095_46451265_46453240_46453434_46454384_46454548_46456159_46456254_46457960_46458111_46458223_46458304_46461855_46461984_46462085_46462174_46463539_46463629_46464723_46464842_46465807_46465899_46466320_46466437_46468545_46468639_46472246
transcript_83861.known	chr7	+	2736	15	FSM	ENSMUSG00000006599.14	ENSMUST00000006774.11	2736	15	0	0	0	0	multi-exon	FALSE	canonical	3	472	junction_5	47.1406925910002	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCTCTCTTGGAGTCTT	4706	False	NA	4	True	AATAAA	-15	NA	46445526	46473224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_46445713_46451095_46451265_46453240_46453434_46454384_46454548_46456159_46456254_46457960_46458111_46458223_46458304_46461855_46461984_46462085_46462174_46463539_46463629_46464723_46464842_46465807_46465899_46466320_46466437_46468545_46468639_46472246
transcript_83867.nic	chr7	+	1822	14	ISM	ENSMUSG00000006599.14	ENSMUST00000006774.11	2736	15	-9	4531	-9	-3640	5prime_fragment	FALSE	canonical	3	472	junction_5	48.9200531237767	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCGAGTACATTGTTCTT	4697	False	NA	NA	False	NA	NA	NA	46445517	46468693	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_46445713_46451095_46451265_46453240_46453434_46454384_46454548_46456159_46456254_46457960_46458111_46458223_46458304_46461855_46461984_46462085_46462174_46463539_46463629_46464723_46464842_46465807_46465899_46466320_46466437_46468545
transcript_83868.nic	chr7	+	1924	14	ISM	ENSMUSG00000006599.14	ENSMUST00000006774.11	2736	15	-9	4429	-9	-3538	5prime_fragment	FALSE	canonical	3	472	junction_5	48.9200531237767	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTAGCTGGCCTTTGCTG	4697	False	NA	NA	False	TATAAA	-20	NA	46445517	46468795	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_46445713_46451095_46451265_46453240_46453434_46454384_46454548_46456159_46456254_46457960_46458111_46458223_46458304_46461855_46461984_46462085_46462174_46463539_46463629_46464723_46464842_46465807_46465899_46466320_46466437_46468545
transcript_83875.known	chr7	+	673	5	FSM	ENSMUSG00000006599.14	ENSMUST00000165031.8	673	5	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	303.089920650621	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGAGGAATTCTGGGCCAA	4717	False	NA	NA	False	TATAAA	-28	NA	46445537	46454451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_46445713_46446820_46446890_46451095_46451265_46453240_46453434_46454384
transcript_83887.known	chr7	+	1766	8	FSM	ENSMUSG00000063229.16	ENSMUST00000005051.6	1766	8	0	0	0	0	multi-exon	FALSE	canonical	2	26	junction_1	2898.88755580904	1686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTCTGCTCTTTTATTA	NA	False	NA	18	True	AATAAA	-14	NA	46496554	46505050	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_46496813_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
transcript_83888.known	chr7	+	1588	8	FSM	ENSMUSG00000063229.16	ENSMUST00000048209.16	1588	8	0	0	0	0	multi-exon	FALSE	canonical	3	6684	junction_1	674.726490316405	20537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	19	True	AATAAA	-15	NA	46495262	46505051	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
transcript_83889.known	chr7	+	1535	8	FSM	ENSMUSG00000063229.16	ENSMUST00000210815.2	1535	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2882.58672099932	2134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	19	True	AATAAA	-15	NA	46495264	46505051	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_46495342_46497019_46497170_46498447_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
transcript_83891.known	chr7	+	1370	8	FSM	ENSMUSG00000030851.16	ENSMUST00000014545.11	1370	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	3.73619909446343	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTCTGCCTTTTATAA	NA	False	NA	NA	False	NA	NA	NA	46510626	46527566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_46510726_46511186_46511320_46515832_46515951_46519022_46519197_46522335_46522510_46525099_46525218_46525897_46526022_46527136
transcript_83897.known	chr7	-	1949	10	FSM	ENSMUSG00000014402.16	ENSMUST00000014546.15	1949	10	0	0	0	0	multi-exon	FALSE	canonical	3	992	junction_2	86.0289931030289	1280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGTACTCTTTGCAAACG	NA	False	NA	NA	False	AATAAA	-30	NA	46569717	46538696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_46539453_46540669_46540910_46542105_46542309_46550774_46550867_46553269_46553337_46556798_46556926_46558652_46558817_46560492_46560559_46563125_46563211_46569568
transcript_83898.known	chr7	-	712	8	FSM	ENSMUSG00000014402.16	ENSMUST00000211076.2	712	8	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_5	369.619661107944	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACAAACTGAGATGGCGGA	NA	False	NA	NA	False	NA	NA	NA	46569692	46542244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_46542309_46550774_46550867_46553269_46553337_46556798_46556926_46558652_46558740_46560492_46560559_46563125_46563211_46569568
transcript_83901.known	chr7	-	4616	12	FSM	ENSMUSG00000043262.17	ENSMUST00000094398.13	4616	12	0	0	0	0	multi-exon	FALSE	canonical	2	49	junction_10	11.9551503476414	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATCTGCTGTCTGATTAAG	NA	False	NA	NA	False	AATAAA	-18	NA	46608275	46572963	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_46576237_46577168_46577293_46580736_46580801_46587638_46587813_46589880_46590052_46593535_46593639_46594978_46595098_46597660_46597797_46600575_46600740_46604771_46604838_46605365_46605451_46608138
transcript_83907.known	chr7	-	801	5	FSM	ENSMUSG00000043262.17	ENSMUST00000208388.2	801	5	0	0	0	0	multi-exon	FALSE	canonical	2	49	junction_3	8.74642784226795	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTTTATCATTACATGT	NA	False	NA	NA	False	TATAAA	-12	NA	46608220	46597392	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_46597797_46600575_46600740_46604771_46604838_46605365_46605451_46608138
transcript_8391.known	chr10	+	744	6	FSM	ENSMUSG00000035242.16	ENSMUST00000179172.8	744	6	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_2	3507.00679212345	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCAGCCCTGCCCAGTGTC	NA	False	NA	NA	False	NA	NA	NA	80662526	80664839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80662740_80664070_80664129_80664129_80664217_80664294_80664468_80664552_80664631_80664704
transcript_83910.known	chr7	+	334	2	FSM	ENSMUSG00000109118.2	ENSMUST00000208046.2	334	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGGTATACCTGAGTCTGG	NA	False	NA	NA	False	AATAAA	-15	NA	46658292	46658756	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_46658342_46658471
transcript_83911.known	chr7	-	5223	6	FSM	ENSMUSG00000049516.10	ENSMUST00000061639.10	5223	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	5.03587132480567	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTACTGGTTTTCATTTA	9272	False	NA	-5	True	ATTAAA	-15	NA	46658159	46640143	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_46643135_46644312_46644391_46645764_46645934_46647219_46648753_46649518_46649634_46657822
transcript_83912.known	chr7	+	649	2	FSM	ENSMUSG00000109118.2	ENSMUST00000208993.2	649	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGGTATACCTGAGTCTGG	NA	False	NA	NA	False	AATAAA	-15	NA	46657830	46658756	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_46658195_46658471
transcript_83913.known	chr7	+	1831	3	FSM	ENSMUSG00000010307.8	ENSMUST00000010451.8	1831	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	1	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCTTCCTGACTTGTCTG	NA	False	NA	NA	False	AATAAA	-24	NA	46700348	46704525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_46700550_46702597_46702863_46703160
transcript_83917.known	chr7	+	2410	17	FSM	ENSMUSG00000030471.18	ENSMUST00000118927.8	2410	17	0	0	0	0	multi-exon	TRUE	canonical	3	240	junction_5	25.4348893009189	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTAGTTTCTAATGCTTC	NA	False	NA	9	True	AATAAA	-20	NA	48438750	48477188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_48438886_48445648_48445795_48449576_48449700_48451054_48451133_48452663_48452809_48454097_48454163_48454937_48455101_48455316_48455443_48458540_48458675_48461072_48461174_48465199_48465325_48466167_48466231_48466893_48466988_48468384_48468469_48472317_48472476_48474381_48474480_48476616
transcript_8392.known	chr10	+	520	3	FSM	ENSMUSG00000035242.16	ENSMUST00000179341.2	520	3	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_2	3355	490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTGTGTCTTGTGTCCT	NA	False	NA	14	True	AATAAA	-14	NA	80664426	80665119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80664468_80664544_80664631_80664726
transcript_83924.known	chr7	-	877	6	FSM	ENSMUSG00000030470.16	ENSMUST00000032658.14	877	6	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	0.4	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATATTCGTCTTCTTTGC	1418	False	NA	NA	False	AATAAA	-19	NA	48497781	48480147	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_48480455_48482309_48482404_48483486_48483620_48485214_48485384_48489168_48489307_48497745
transcript_83927.known	chr7	-	3691	13	FSM	ENSMUSG00000046179.18	ENSMUST00000058745.15	3691	13	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_12	14.9024606469312	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAACATTTTCATTTGGCC	NA	False	NA	-1	True	ATTAAA	-17	NA	48530789	48516176	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_48516978_48517401_48517788_48517906_48518040_48520438_48520965_48521560_48521649_48521833_48522035_48523007_48523146_48524719_48524882_48525204_48525520_48527689_48527847_48528172_48528452_48530025_48530150_48530408
transcript_83928.known	chr7	+	1390	2	FSM	ENSMUSG00000085995.3	ENSMUST00000147173.2	1390	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTCCTTGTAAGCGGATT	NA	False	NA	NA	False	TTTAAA	-28	NA	48531047	48536356	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_48531266_48535184
transcript_8393.known	chr10	+	2526	2	FSM	ENSMUSG00000035242.16	ENSMUST00000179894.2	2526	2	0	0	0	0	multi-exon	FALSE	canonical	3	7170	junction_1	0	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGGCTGTGTCTTGTGTCC	NA	False	NA	13	True	AATAAA	-13	NA	80662515	80665118	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80664468_80664544
transcript_83934.nnic	chr7	+	953	6	NIC	ENSMUSG00000039745.9	novel	1418	6	NA	NA	-107	-364	combination_of_known_splicesites	FALSE	canonical	3	34	junction_1	90.6598036618214	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTGGTGTGCTTCTCCT	9773	False	NA	3	True	TATAAA	-17	NA	49408755	49423359	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_49408894_49409345_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
transcript_83935.nnic	chr7	+	1317	6	NIC	ENSMUSG00000039745.9	novel	1418	6	NA	NA	-107	0	combination_of_known_splicesites	FALSE	canonical	3	34	junction_1	90.6598036618214	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAATAAATGGAGAAA	9773	False	NA	-5	True	NA	NA	NA	49408755	49423723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_49408894_49409345_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
transcript_83936.nic	chr7	+	965	6	NIC	ENSMUSG00000039745.9	novel	1418	6	NA	NA	-63	-364	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	93.7861397009174	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTGGTGTGCTTCTCCT	9817	False	NA	3	True	TATAAA	-17	NA	49408799	49423359	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_49408894_49409289_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
transcript_83937.nic	chr7	+	1329	6	NIC	ENSMUSG00000039745.9	novel	1418	6	NA	NA	-63	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	93.7861397009174	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAATAAATGGAGAAA	9817	False	NA	-5	True	NA	NA	NA	49408799	49423723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_49408894_49409289_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
transcript_83939.known	chr7	+	1338	6	FSM	ENSMUSG00000039745.9	ENSMUST00000207895.2	1338	6	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	54.5688555863141	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAATAAATGGAGAAA	9918	False	NA	-5	True	NA	NA	NA	49408900	49423723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_49409060_49409345_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
transcript_83942.known	chr7	+	1418	6	FSM	ENSMUSG00000039745.9	ENSMUST00000085272.7	1418	6	0	0	0	0	multi-exon	TRUE	canonical	3	12	junction_1	99.2685247195706	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAATAAATGGAGAAA	9894	False	NA	-5	True	NA	NA	NA	49408876	49423723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_49409060_49409289_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
transcript_83954.known	chr7	+	983	3	FSM	ENSMUSG00000039745.9	ENSMUST00000208048.2	983	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	102	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCATTGTCTCGCTCTTAC	9880	False	NA	NA	False	AATAAA	-14	NA	49408862	49412507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_49408894_49409289_49409542_49411807
transcript_83959.known	chr7	+	2507	16	FSM	ENSMUSG00000030505.18	ENSMUST00000032715.13	2507	16	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_1	68.5528506579656	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTGAATGTTTTCATGAA	NA	False	NA	44	True	AATAAA	-28	NA	49428093	49508013	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_49428250_49428328_49428462_49430056_49430140_49430868_49430919_49431689_49431793_49435814_49435975_49436980_49437123_49441720_49441787_49448053_49448176_49456274_49456375_49467779_49467859_49476455_49476644_49478691_49478779_49498242_49498294_49498484_49498573_49507114
transcript_83967.known	chr7	+	504	5	FSM	ENSMUSG00000030505.18	ENSMUST00000152127.8	504	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	242.224456857684	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGATAAAAGAGTAGATGAT	NA	False	NA	NA	False	NA	NA	NA	49428184	49431910	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_49428250_49428328_49428462_49430056_49430092_49430868_49430919_49431689
transcript_83968.known	chr7	+	986	5	FSM	ENSMUSG00000030505.18	ENSMUST00000140656.8	986	5	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_1	95.643543953578	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATGGTTCATAGTGGG	NA	False	NA	NA	False	ATTAAA	-12	NA	49428093	49432253	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_49428250_49428328_49428462_49430056_49430140_49430868_49430919_49431689
transcript_83969.nnic	chr7	+	1006	3	NNC	ENSMUSG00000030505.18	novel	2507	16	NA	NA	47949	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	277	43	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTGAATGTTTTCATGAA	NA	False	NA	44	True	AATAAA	-28	NA	49496086	49508013	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_49496106_49498484_49498573_49507114
transcript_8397.known	chr10	-	609	4	FSM	ENSMUSG00000035215.10	ENSMUST00000218119.2	609	4	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_3	2094.66343093321	4843	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTCCCTCCCTTCCTGCT	NA	False	NA	-23	True	AATAAA	-15	NA	80691027	80688668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80688935_80689591_80689664_80690451_80690543_80690847
transcript_83970.known	chr7	+	6617	20	FSM	ENSMUSG00000055409.15	ENSMUST00000081872.13	6617	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.306892204991858	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATATGCATGTATATTCTT	NA	False	NA	NA	False	NA	NA	NA	49624611	50516356	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_49625192_49632423_49632553_49712365_49712517_49770277_49770449_49825972_49826070_49869329_49869403_49870001_49870085_49878539_49878675_49879903_49880007_49899388_49899463_49907913_49908014_49929265_49929395_50098587_50098714_50210514_50210638_50350903_50351000_50476007_50476149_50498230_50498425_50503576_50503754_50505951_50506177_50512646
transcript_83971.known	chr7	+	468	1	FSM	ENSMUSG00000109059.2	ENSMUST00000209075.2	468	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	316	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTTGTGTATACGTTAATA	NA	False	NA	NA	False	NA	NA	NA	51107807	51108275	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_51107800_51108300
transcript_83973.nnic	chr7	+	1140	2	Genic_Genomic	ENSMUSG00000078636.5	novel	1232	1	NA	NA	-20	17	multi-exon	FALSE	canonical	2	157	junction_1	0	3660	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGAGGCTCAGT	NA	False	NA	NA	False	AATAAA	-31	NA	51396374	51397643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr7_+_51396454_51396582
transcript_83974.known	chr7	+	1232	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	66729	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	51396394	51397626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_51396400_51397600
transcript_8398.known	chr10	-	435	4	FSM	ENSMUSG00000035215.10	ENSMUST00000219421.2	435	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	2101.72981665632	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTAGCAGCAAAGGAGAGC	NA	False	NA	NA	False	NA	NA	NA	80690990	80688797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80688935_80689591_80689664_80690451_80690546_80690858
transcript_83987.known	chr7	+	2232	8	FSM	ENSMUSG00000030498.16	ENSMUST00000107591.9	2232	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	21.3474655571636	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTATTTGTCTCTGTATC	NA	False	NA	6	True	ATTAAA	-23	NA	51528797	51644206	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_51529119_51537659_51537825_51546998_51547121_51576150_51576293_51586301_51586366_51593397_51593540_51602941_51603050_51643038
transcript_83990.nic	chr7	+	504	3	ISM	ENSMUSG00000030498.16	ENSMUST00000107589.8	1857	10	-73	101590	-73	0	5prime_fragment	FALSE	canonical	3	23	junction_1	4.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTGGTCATGATGTTTT	944	False	NA	NA	False	NA	NA	NA	51512101	51514145	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_51512394_51513745_51513842_51514029
transcript_83991.known	chr7	+	2181	8	FSM	ENSMUSG00000030498.16	ENSMUST00000051912.13	2181	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	21.6888949295557	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACACATTATTTGTCTCT	NA	False	NA	1	True	ATTAAA	-18	NA	51528714	51644201	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_51528990_51537659_51537825_51546998_51547121_51576150_51576293_51586301_51586366_51593397_51593540_51602941_51603050_51643038
transcript_83994.known	chr7	-	3053	4	FSM	ENSMUSG00000074093.5	ENSMUST00000098414.5	3053	4	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_2	8.05536398239638	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGGCAAGAGTTAGATGCA	NA	False	NA	-19	True	AATAAA	-17	NA	51655766	51646918	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_51649526_51653093_51653208_51653682_51653734_51655485
transcript_83999.known	chr7	-	487	4	FSM	ENSMUSG00000074093.5	ENSMUST00000209193.2	487	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	43.8583578757294	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAAATATTGGTAATATT	NA	False	NA	NA	False	AATATA	-9	NA	51655446	51649359	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_51649526_51653093_51653208_51653682_51653734_51655290
transcript_840.known	chr1	+	3680	17	FSM	ENSMUSG00000025915.15	ENSMUST00000171265.8	3680	17	0	0	0	0	multi-exon	TRUE	canonical	3	97	junction_4	18.6899036915657	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTTGGACTATTTCATG	9814	False	NA	NA	False	ATTAAA	-14	NA	9918496	9971068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_9918611_9935355_9935574_9938607_9938692_9941854_9941928_9942482_9942559_9947390_9947479_9949250_9949301_9950556_9950615_9951802_9951887_9951984_9952117_9954631_9954745_9954849_9954887_9955891_9955979_9956271_9956368_9959094_9959251_9961585_9961676_9968944
transcript_84000.nnic	chr7	-	569	2	Genic_Genomic	ENSMUSG00000099647.2	novel	321	1	NA	NA	-51	260	multi-exon	FALSE	canonical	3	74	junction_1	0	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAACTTCA	NA	False	NA	NA	False	AATAAA	-25	NA	54062277	54061645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr7_-_54062012_54062074
transcript_84002.known	chr7	+	3905	23	FSM	ENSMUSG00000033790.12	ENSMUST00000032627.5	3905	23	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_19	13.708973353728	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTCGGTTCAGTTTGGG	NA	False	NA	NA	False	AATATA	-19	NA	55443901	55481425	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_55444089_55445645_55445700_55445786_55445896_55448579_55448677_55449210_55449291_55450376_55450513_55454328_55454444_55455042_55455133_55455800_55455895_55456330_55456578_55458258_55458462_55463180_55463297_55464607_55464877_55466205_55466405_55466986_55467176_55468461_55468645_55471526_55471612_55471725_55471847_55473267_55473447_55475327_55475454_55475980_55476070_55479078_55479180_55480589
transcript_84004.nic	chr7	+	2625	18	ISM	ENSMUSG00000033790.12	ENSMUST00000206789.2	3735	21	-28	4967	-17	3092	5prime_fragment	FALSE	canonical	3	67	junction_15	9.6774986044305	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGGTCCTGGAAAGTTTT	NA	False	NA	3	True	AATAAA	-14	NA	55443884	55471880	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_55444089_55445645_55445700_55445786_55445896_55448579_55448677_55449210_55449291_55450376_55450513_55454328_55454444_55455042_55455133_55455800_55455895_55456330_55456578_55458258_55458462_55463180_55463297_55464607_55464877_55466205_55466405_55466986_55467176_55468461_55468645_55471526_55471612_55471725
transcript_84005.nic	chr7	+	2388	14	ISM	ENSMUSG00000033790.12	ENSMUST00000206789.2	3735	21	-28	10068	-17	-745	5prime_fragment	FALSE	canonical	3	83	junction_7	5.82384407099929	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCGTGTATAGCACTAATG	NA	False	NA	NA	False	AATAAA	-19	NA	55443884	55466779	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_55444089_55445645_55445700_55445786_55445896_55448579_55448677_55449210_55449291_55450376_55450513_55454328_55454444_55455042_55455133_55455800_55455895_55456330_55456578_55458258_55458462_55463180_55463297_55464607_55464877_55466205
transcript_84013.known	chr7	+	6440	31	FSM	ENSMUSG00000030447.16	ENSMUST00000032629.16	6440	31	0	0	0	0	multi-exon	FALSE	canonical	3	493	junction_19	46.6292707308284	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATGGAAAAAATAAAACATT	NA	False	NA	NA	False	NA	NA	NA	55491818	55582350	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_55492056_55521606_55521725_55521814_55521905_55523193_55523272_55523404_55523507_55524654_55524837_55527438_55527536_55527626_55527756_55528824_55528930_55536473_55536566_55537569_55537688_55541736_55541860_55542867_55542994_55544728_55544896_55546415_55546564_55547985_55548140_55549662_55549820_55550251_55550349_55553936_55554014_55554121_55554231_55557066_55557187_55558112_55558313_55563187_55563276_55569167_55569312_55572494_55572586_55573622_55573754_55574121_55574195_55574859_55574955_55576035_55576275_55577934_55578083_55579745
transcript_84018.known	chr7	-	3039	6	FSM	ENSMUSG00000030452.17	ENSMUST00000117812.8	3039	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	82.412620392753	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGGGGTTTCCCAGCCC	NA	False	NA	-20	True	AATAAA	-16	NA	55612187	55581034	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611947
transcript_84019.nnic	chr7	-	2880	6	NIC	ENSMUSG00000030452.17	novel	3197	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_5	84.7924524943111	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGGGGTTTCCCAGCCC	NA	False	NA	-20	True	AATAAA	-16	NA	55612224	55581034	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55612143
transcript_8403.known	chr10	-	468	4	FSM	ENSMUSG00000035215.10	ENSMUST00000035775.9	468	4	0	0	0	0	multi-exon	FALSE	canonical	3	2872	junction_3	751.769616009822	29680	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCCTGCTCTGTAACTTT	NA	False	NA	-13	True	AATAAA	-25	NA	80691043	80688658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80688935_80689591_80689664_80690451_80690543_80691014
transcript_84032.known	chr7	-	743	4	FSM	ENSMUSG00000030452.17	ENSMUST00000147950.8	743	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	101.365126591392	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAATATATTATGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	55612140	55582997	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_55583296_55585545_55585707_55587319_55587411_55611947
transcript_84034.known	chr7	-	3197	7	FSM	ENSMUSG00000030452.17	ENSMUST00000032635.14	3197	7	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_5	25.3837218179946	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGGGGTTTCCCAGCCC	NA	False	NA	-20	True	AATAAA	-16	NA	55612224	55581034	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611199_55611321_55611947
transcript_84035.known	chr7	+	399	1	FSM	ENSMUSG00000078087.6	ENSMUST00000183090.2	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	265	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATTTTGGCTGAAAAAA	NA	False	NA	NA	False	AAGAAA	-4	NA	55663763	55664162	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_55663800_55664200
transcript_84037.nic	chr7	+	417	4	ISM	ENSMUSG00000030451.17	ENSMUST00000076226.13	15250	93	-106	159455	-49	-635	5prime_fragment	FALSE	canonical	3	14	junction_1	1.24721912892465	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGAAGAAGGAAGAAGAAGA	NA	False	NA	27	True	AAGAAA	-19	NA	55699894	55722093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_55700051_55700603_55700697_55717731_55717847_55722040
transcript_84038.known	chr7	+	15250	93	FSM	ENSMUSG00000030451.17	ENSMUST00000076226.13	15250	93	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_17	17.9453164058863	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTAGGCTGAATTTCTTAA	NA	False	NA	7	True	AATAAA	-16	NA	55700000	55881548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_55700051_55700603_55700697_55717731_55717847_55722040_55722179_55734736_55734957_55737087_55737189_55738004_55738162_55740662_55740774_55742286_55742459_55744012_55744187_55747124_55747314_55748082_55748235_55749826_55749985_55750075_55750190_55753475_55753728_55756086_55756281_55758433_55758635_55762792_55763022_55763145_55763271_55764449_55764629_55771292_55771478_55772060_55772217_55773944_55774131_55780916_55781088_55781546_55781651_55782169_55782321_55784343_55784559_55784778_55784912_55785017_55785146_55785233_55785430_55786334_55786469_55786968_55787143_55787216_55787354_55787467_55787620_55788526_55788719_55795511_55795700_55796284_55796478_55798386_55798570_55802190_55802373_55802791_55802940_55803013_55803211_55803524_55803756_55804762_55804902_55806134_55806279_55806607_55806751_55807038_55807307_55807395_55807533_55809121_55809221_55813489_55813659_55813756_55813883_55814662_55814772_55814885_55815026_55818573_55818765_55820133_55820240_55820322_55820415_55827572_55827749_55830816_55830929_55832152_55832235_55832327_55832472_55833689_55833781_55834053_55834232_55834373_55834456_55834540_55834713_55835582_55835728_55838308_55838535_55839551_55839724_55840914_55841102_55841541_55841683_55843957_55844150_55846803_55846958_55851848_55851957_55853523_55853656_55854133_55854293_55854381_55854501_55855059_55855186_55855615_55855772_55856269_55856386_55856475_55856675_55857439_55857655_55862568_55862747_55863189_55863352_55865100_55865193_55865594_55865735_55869452_55869641_55870224_55870423_55872657_55872742_55876266_55876409_55876585_55876781_55877549_55877663_55878176_55878368_55879031_55879138_55879408_55879622_55880607
transcript_84039.known	chr7	+	4348	9	FSM	ENSMUSG00000033676.14	ENSMUST00000196198.5	4348	9	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	10.0739453542294	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATAGTACTGTCTTTCCA	NA	False	NA	NA	False	AATAAA	-13	NA	57240265	57477382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_57240397_57241228_57241321_57241518_57241587_57415171_57415393_57438613_57438697_57442239_57442378_57461801_57461955_57466022_57466268_57474165
transcript_8404.known	chr10	-	1129	3	FSM	ENSMUSG00000035215.10	ENSMUST00000220225.2	1129	3	0	0	0	0	multi-exon	FALSE	canonical	3	2872	junction_2	840	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCTCTGTAACTTTGATC	NA	False	NA	-9	True	AATAAA	-29	NA	80691043	80688654	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80689664_80690451_80690543_80691014
transcript_84040.nnic	chr7	+	602	4	NNC	ENSMUSG00000033676.14	novel	4348	9	NA	NA	-36	-150008	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	16.5193489244852	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGAACAGTCAATTTCT	NA	False	NA	NA	False	NA	NA	NA	57240229	57265521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_57240397_57241228_57241321_57241518_57241587_57265246
transcript_84042.known	chr7	-	2193	3	FSM	ENSMUSG00000100826.7	ENSMUST00000188976.2	2193	3	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_2	5.5	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATAGTTTGTGTTTTTC	NA	False	NA	-6	True	ATTAAA	-20	NA	59624179	59619324	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_59620292_59621627_59621693_59623018
transcript_84043.known	chr7	+	9856	13	FSM	ENSMUSG00000025326.13	ENSMUST00000200758.4	9856	13	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	78.4443805083151	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTTTGCTAGTATTTTG	NA	False	NA	9	True	NA	NA	NA	58878549	58961284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_58879020_58890714_58890782_58893097_58893218_58896920_58896966_58921694_58921985_58925515_58926763_58934427_58934573_58935801_58936008_58936615_58936781_58938153_58938310_58938454_58938529_58953415_58953560_58954557
transcript_84047.known	chr7	+	4911	11	FSM	ENSMUSG00000025326.13	ENSMUST00000107537.5	4911	11	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	51.6876194073591	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGATTTGTGTTCTTCAG	NA	False	NA	7	True	AATAAA	-7	NA	58878498	58956475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_58879020_58896920_58896966_58921694_58921985_58925515_58926763_58934427_58934573_58935801_58936008_58936615_58936781_58938153_58938310_58938454_58938529_58953415_58953560_58954557
transcript_8405.known	chr10	+	2869	15	FSM	ENSMUSG00000035206.11	ENSMUST00000035597.10	2869	15	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_5	7.35298079221021	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCCTCCTGTCCTGTGAG	NA	False	NA	11	True	ATTAAA	-19	NA	80691108	80704542	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80691223_80697179_80697300_80698013_80698197_80698532_80698623_80698788_80698929_80699013_80699154_80699288_80699386_80699871_80699989_80700954_80701037_80701143_80701219_80701288_80701352_80701441_80701542_80701885_80701964_80702333_80702495_80703233
transcript_84052.known	chr7	+	616	3	FSM	ENSMUSG00000025326.13	ENSMUST00000201794.4	616	3	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	28.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTGAAGCTAGCCGAATG	NA	False	NA	NA	False	NA	NA	NA	58878549	58896946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_58879020_58893097_58893218_58896920
transcript_84080.known	chr7	-	1932	10	FSM	ENSMUSG00000102252.6	ENSMUST00000059305.17	1932	10	0	0	0	0	multi-exon	FALSE	canonical	3	1774	junction_5	121.666210044805	3257	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATTCTCAGAAGTCAATG	NA	False	NA	NA	False	NA	NA	NA	59654859	59632242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_59633026_59633116_59633243_59634772_59634912_59635578_59635732_59636519_59636632_59637159_59637312_59638349_59638496_59645153_59645303_59649065_59649162_59654783
transcript_84081.known	chr7	-	1199	7	FSM	ENSMUSG00000000948.17	ENSMUST00000179360.3	1199	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	973.244573578502	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGATTAATGAGTAACATTT	NA	False	NA	NA	False	ATTAAA	-30	NA	59654812	59623896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_59623924_59630239_59630905_59632011_59632134_59632181_59632293_59645153_59645303_59649065_59649162_59654783
transcript_84082.known	chr7	-	2547	1	FSM	ENSMUSG00000070527.4	ENSMUST00000094340.4	2547	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGACTCTTTTTTTAAT	NA	False	NA	0	True	AATAAA	-18	NA	62069887	62067340	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_62067300_62069900
transcript_84083.known	chr7	-	2640	1	FSM	ENSMUSG00000070526.3	ENSMUST00000094339.3	2640	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAAGCCTAACATTTTTT	NA	False	NA	NA	False	AATAAA	-31	NA	62114258	62111618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_62111600_62114300
transcript_84084.known	chr7	-	2814	5	FSM	ENSMUSG00000030525.9	ENSMUST00000208304.2	2814	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	6.86931583201704	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGAGGCTGTCTTGGAT	NA	False	NA	NA	False	NA	NA	NA	62862317	62789172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_62791544_62798330_62798441_62809284_62809330_62861855_62861996_62862169
transcript_84089.known	chr7	+	396	3	FSM	ENSMUSG00000033510.15	ENSMUST00000176734.2	396	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGGAACACCTTCCCAGAT	NA	False	NA	NA	False	NA	NA	NA	63094524	63267648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_63094676_63265036_63265167_63267533
transcript_84090.nnic	chr7	-	650	2	NNC	ENSMUSG00000052040.11	novel	6396	2	NA	NA	1089	71	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGATTCAGCGGTGTTG	NA	False	NA	NA	False	AATACA	-13	NA	63587574	63541059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_63541546_63587410
transcript_84091.nnic	chr7	-	581	2	NNC	ENSMUSG00000052040.11	novel	6396	2	NA	NA	1089	2	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCTCAAAAAAAAAATTAAAA	NA	False	NA	NA	False	NA	NA	NA	63587574	63541128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_63541546_63587410
transcript_84092.known	chr7	-	6396	2	FSM	ENSMUSG00000052040.11	ENSMUST00000063694.10	6396	2	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTTGCCTCGGTTGAG	NA	False	NA	-13	True	AATAAA	-16	NA	63588663	63536098	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_63541546_63587714
transcript_84093.known	chr7	-	487	2	FSM	ENSMUSG00000052040.11	ENSMUST00000185175.2	487	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATCTCAAAAAAAAAATTAA	NA	False	NA	NA	False	NA	NA	NA	63586049	63541130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_63541546_63585977
transcript_84095.known	chr7	+	405	3	FSM	ENSMUSG00000108313.2	ENSMUST00000206457.2	405	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGATATAAGATTCAAATACA	5898	False	NA	NA	False	NA	NA	NA	63611987	63617492	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_63612072_63616036_63616121_63617255
transcript_84097.known	chr7	+	2765	14	FSM	ENSMUSG00000030523.19	ENSMUST00000205434.2	2765	14	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_13	349.928648686554	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAAATCTTAGATGAATTG	NA	False	NA	13	True	AATAAA	-18	NA	63835297	63874512	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585_63860687_63867237_63867409_63868855_63868991_63869989_63870041_63873438
transcript_8410.known	chr10	-	1225	3	FSM	ENSMUSG00000020219.8	ENSMUST00000020440.7	1225	3	0	0	0	0	multi-exon	FALSE	canonical	3	3643	junction_2	39.5	11020	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTCCCATCGGACTCCCA	5448	False	NA	NA	False	AATATA	-13	NA	80736803	80735283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80736094_80736315_80736385_80736457
transcript_84106.known	chr7	+	2575	11	FSM	ENSMUSG00000030523.19	ENSMUST00000205731.2	2575	11	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_10	225.867682504603	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCTGGCTCTTTGACTCAT	NA	False	NA	NA	False	NA	NA	NA	63835302	63868483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585_63860687_63867237
transcript_8411.known	chr10	-	542	3	FSM	ENSMUSG00000020219.8	ENSMUST00000219896.2	542	3	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_2	1726.5	1754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTCACCTCACTGCTTCA	5632	False	NA	-7	True	AATAAA	-25	NA	80736619	80735737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80736094_80736315_80736385_80736502
transcript_84110.nic	chr7	+	2076	11	NIC	ENSMUSG00000030523.19	novel	1992	10	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	52	junction_1	301.433309373732	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGACTGAGTTTTCAGAC	NA	False	NA	26	True	ATTAAA	-23	NA	63835130	63861175	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_63835372_63836134_63836221_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
transcript_84115.known	chr7	+	1992	10	FSM	ENSMUSG00000030523.19	ENSMUST00000205960.2	1992	10	0	0	0	0	multi-exon	FALSE	canonical	3	724	junction_5	65.6911967719673	1244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGACTGAGTTTTCAGAC	NA	False	NA	26	True	ATTAAA	-23	NA	63835128	63861175	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
transcript_8412.known	chr10	-	435	2	FSM	ENSMUSG00000020219.8	ENSMUST00000218149.2	435	2	0	0	0	0	multi-exon	FALSE	canonical	3	3722	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAACTGTTTTCCCTGCCA	5635	False	NA	NA	False	NA	NA	NA	80736616	80735959	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80736094_80736315
transcript_8413.known	chr10	-	3370	12	FSM	ENSMUSG00000062075.14	ENSMUST00000179022.8	3370	12	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_8	24.5238962565761	193	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTCAGAGTAGATCTTCA	3111	False	NA	-1	True	AATAAA	-17	NA	80754079	80737197	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80738735_80739045_80739157_80739283_80739404_80739764_80739873_80739948_80740223_80740386_80740608_80740719_80740846_80740914_80741086_80742984_80743111_80743218_80743376_80745742_80745880_80753797
transcript_84136.known	chr7	+	441	5	FSM	ENSMUSG00000030523.19	ENSMUST00000205690.2	441	5	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	385.564764339274	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTGGCAGCTGGAGCTCC	NA	False	NA	NA	False	NA	NA	NA	63835348	63851690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_63835372_63836134_63836221_63847024_63847105_63848910_63849107_63851634
transcript_84143.nic	chr7	+	560	3	ISM	ENSMUSG00000030523.19	ENSMUST00000205960.2	1992	10	-33	12061	-33	83	5prime_fragment	FALSE	canonical	3	864	junction_1	19.5	456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGATGGGGTGCTGTACAA	NA	False	NA	12	True	AATAAA	-15	NA	63835095	63849114	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_63835372_63847024_63847105_63848910
transcript_84144.known	chr7	+	5205	16	FSM	ENSMUSG00000030522.15	ENSMUST00000032736.11	5205	16	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_5	5.98739416515139	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGGTCTTGCCTTTGTTA	727	False	NA	5	True	AATAAA	-17	NA	63937417	63990554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_63937590_63938086_63938148_63947207_63947345_63949286_63949360_63950287_63950431_63957875_63957967_63963831_63964013_63967838_63967927_63968006_63968096_63969162_63969294_63970312_63970383_63970910_63970982_63976399_63976570_63983059_63983231_63986459_63986643_63987180
transcript_84145.known	chr7	-	2248	11	FSM	ENSMUSG00000030521.12	ENSMUST00000032735.8	2248	11	0	0	0	0	multi-exon	FALSE	canonical	3	635	junction_4	61.7421250039226	962	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACGGGCTTATTTCATC	NA	False	NA	-3	True	NA	NA	NA	64042016	64026274	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_64026553_64026915_64027144_64028485_64028594_64030677_64030789_64032638_64032777_64034049_64034118_64035426_64035569_64037196_64037366_64038613_64038772_64039194_64039880_64041853
transcript_84146.known	chr7	-	2276	2	FSM	ENSMUSG00000030521.12	ENSMUST00000205516.2	2276	2	0	0	0	0	multi-exon	FALSE	canonical	3	724	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAGAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	64041984	64037734	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_64039880_64041853
transcript_8415.known	chr10	+	1284	4	FSM	ENSMUSG00000015312.10	ENSMUST00000015456.10	1284	4	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_3	10.2089285540757	1205	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTCTCGTTGTATTTTA	248	False	NA	5	True	AATAAA	-14	NA	80765906	80768038	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80766194_80766281_80766384_80766862_80767086_80767366
transcript_84162.known	chr7	+	391	2	FSM	ENSMUSG00000033429.11	ENSMUST00000206882.2	391	2	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	0	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTATTTGTTATTTGA	NA	False	NA	21	True	ATTAAA	-22	NA	64042487	64061869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_64042592_64061582
transcript_84163.known	chr7	+	828	3	FSM	ENSMUSG00000033429.11	ENSMUST00000037205.11	828	3	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_2	55.5	2762	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTTGTTATTTGAATTT	NA	False	NA	25	True	ATTAAA	-26	NA	64042392	64061873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_64042592_64049916_64050255_64061582
transcript_84164.known	chr7	+	532	3	FSM	ENSMUSG00000033429.11	ENSMUST00000206194.2	532	3	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_2	103	1457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTATTTGTTATTTGA	NA	False	NA	21	True	ATTAAA	-22	NA	64042522	64061869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_64042592_64049916_64050093_64061582
transcript_84169.known	chr7	-	3842	4	FSM	ENSMUSG00000030518.18	ENSMUST00000133883.2	3842	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	2.62466929133727	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGTATTTCTGGTCTCT	NA	False	NA	NA	False	NA	NA	NA	64423400	64405860	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_64409162_64411500_64411729_64417399_64417476_64423163
transcript_84171.known	chr7	+	1003	6	FSM	ENSMUSG00000078681.11	ENSMUST00000107495.5	1003	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	226.65709783724	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAACTTTTTATTTGCCTG	NA	False	NA	28	True	AATAAA	-28	NA	65343164	65351661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_65343318_65343598_65343692_65344890_65345076_65347443_65347619_65348839_65348916_65351340
transcript_84172.known	chr7	+	905	6	FSM	ENSMUSG00000078681.11	ENSMUST00000206517.2	905	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	235.550079600921	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACGACAACCCAGAACTTT	NA	False	NA	17	True	AATAAA	-17	NA	65343224	65351650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_65343318_65343598_65343692_65344917_65345076_65347443_65347619_65348839_65348916_65351340
transcript_84173.known	chr7	+	908	5	FSM	ENSMUSG00000078681.11	ENSMUST00000032726.14	908	5	0	0	0	0	multi-exon	FALSE	canonical	3	473	junction_3	21.6333076527839	818	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACGACAACCCAGAACTTT	NA	False	NA	17	True	AATAAA	-17	NA	65343155	65351650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_65343318_65344890_65345076_65347443_65347619_65348839_65348916_65351340
transcript_84175.nic	chr7	+	836	5	NIC	ENSMUSG00000078681.11	novel	905	6	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	208.078711068672	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACGACAACCCAGAACTTT	NA	False	NA	17	True	AATAAA	-17	NA	65343200	65351650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_65343318_65344917_65345076_65347443_65347619_65348839_65348916_65351340
transcript_84177.known	chr7	+	653	4	FSM	ENSMUSG00000078681.11	ENSMUST00000206934.2	653	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	228.370070037404	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCACGACAACCCAGAACT	NA	False	NA	15	True	AATAAA	-15	NA	65343223	65351648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_65343318_65347443_65347619_65348839_65348916_65351340
transcript_8418.known	chr10	-	3382	4	FSM	ENSMUSG00000048240.15	ENSMUST00000117805.8	3382	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	3.68178700572909	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTCGACTCTAAATTATTT	4424	False	NA	0	True	AATAAA	-19	NA	80850779	80784457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80787581_80788664_80788781_80833825_80833879_80850689
transcript_84182.known	chr7	+	1248	9	FSM	ENSMUSG00000030512.14	ENSMUST00000153609.8	1248	9	0	0	0	0	multi-exon	FALSE	canonical	3	2395	junction_6	274.913622798144	18684	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGCTGTGTATCTGCA	NA	False	NA	23	True	AATAAA	-23	NA	65710085	65724335	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_65710441_65711871_65712020_65713514_65713594_65718914_65718962_65719171_65719275_65719866_65719947_65720337_65720414_65720979_65721074_65724069
transcript_84183.known	chr7	+	955	8	FSM	ENSMUSG00000030512.14	ENSMUST00000032723.9	955	8	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_5	1022.69418095299	1862	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGGACTGTGTGCTGTGT	NA	False	NA	16	True	AATAAA	-16	NA	65710291	65724328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_65710441_65711871_65712020_65713514_65713594_65718914_65718962_65719171_65719275_65720337_65720414_65720979_65721074_65724069
transcript_84185.known	chr7	+	1157	6	FSM	ENSMUSG00000075701.11	ENSMUST00000206575.2	1157	6	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_5	154.225808475754	2170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACAGTCTCTGGTTTTTC	NA	False	NA	5	True	AGTAAA	-14	NA	65729425	65739151	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_65729538_65730079_65730215_65733147_65733255_65736694_65736785_65736940_65737017_65738514
transcript_84187.known	chr7	+	897	6	FSM	ENSMUSG00000075701.11	ENSMUST00000205279.2	897	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	173.168819364226	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGATGATACTTTGGG	NA	False	NA	NA	False	CATAAA	-6	NA	65729434	65738868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_65729567_65730079_65730215_65733147_65733255_65736694_65736785_65736940_65737020_65738514
transcript_84189.nic	chr7	-	878	4	NIC	ENSMUSG00000015133.18	novel	1559	3	NA	NA	-20	11	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	0.471404520791032	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAACAAAAGCTAAGC	NA	False	NA	NA	False	NA	NA	NA	66038118	65991406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_65991755_65992509_65992674_66031199_66031415_66037967
transcript_84190.known	chr7	-	3443	13	FSM	ENSMUSG00000015134.16	ENSMUST00000015278.15	3443	13	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	4.11214326382511	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATTGTTTTTCATTGGAG	NA	False	NA	0	True	AATAAA	-19	NA	66077265	66040637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_66042510_66048435_66048511_66049825_66049984_66051718_66051884_66055721_66055907_66057548_66057652_66058913_66059028_66061249_66061379_66062105_66062168_66062648_66062779_66068850_66068992_66071958_66072064_66077061
transcript_84191.nic	chr7	-	1538	7	ISM	ENSMUSG00000015134.16	ENSMUST00000015278.15	3443	13	2	17621	2	0	5prime_fragment	FALSE	canonical	3	14	junction_3	2.80871659105879	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGACTCTGGCCTACAACC	NA	False	NA	NA	False	NA	NA	NA	66077263	66058258	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_66059028_66061249_66061379_66062105_66062168_66062648_66062779_66068850_66068992_66071958_66072064_66077061
transcript_84199.known	chr7	-	4928	6	FSM	ENSMUSG00000030509.18	ENSMUST00000124899.8	4928	6	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	20.3273215156351	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGAATTTGTGTTTTCTT	NA	False	NA	-2	True	ATTAAA	-32	NA	66339344	66294312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_66297674_66309397_66310004_66328827_66329090_66331452_66331557_66338570_66338669_66338847
transcript_8420.nnic	chr10	-	537	3	NNC	ENSMUSG00000048240.15	novel	875	3	NA	NA	31689	238	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCTGACCTAGCTGGAG	5311	False	NA	NA	False	NA	NA	NA	80802335	80787307	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_80787581_80788664_80788781_80802187
transcript_84201.nic	chr7	-	2196	5	NIC	ENSMUSG00000030509.18	novel	2137	6	NA	NA	-12	0	intron_retention	FALSE	canonical	3	50	junction_1	11.9687092035858	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTTGTTCATCTTAGTGT	NA	False	NA	NA	False	AATAAA	-26	NA	66339356	66326770	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_66327994_66328827_66329090_66331452_66331557_66338570_66338669_66338847
transcript_84202.known	chr7	-	540	2	FSM	ENSMUSG00000030509.18	ENSMUST00000208059.2	540	2	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTTTACTCCTGGCCCCT	NA	False	NA	NA	False	NA	NA	NA	66339263	66338544	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_66338669_66338847
transcript_84207.known	chr7	+	2647	8	FSM	ENSMUSG00000053091.17	ENSMUST00000077967.13	2647	8	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_5	18.4113984215413	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATGCGTGTCTGGGTCT	NA	False	NA	11	True	AATAAA	-17	NA	66339705	66364492	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_66339772_66345923_66346055_66357787_66358302_66358386_66358477_66359041_66359184_66359906_66360495_66361620_66361793_66363548
transcript_84208.known	chr7	+	5088	8	FSM	ENSMUSG00000053091.17	ENSMUST00000130161.9	5088	8	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	19.3454102556442	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCAAGTGTCCTTGTGAT	NA	False	NA	NA	False	NA	NA	NA	66339705	66367004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_66339772_66345923_66346055_66357787_66358302_66358386_66358477_66359041_66359184_66359977_66360495_66361620_66361793_66363548
transcript_84215.known	chr7	+	537	4	FSM	ENSMUSG00000053091.17	ENSMUST00000150071.8	537	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	37.7918274528002	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTACATCTTCTATCTCAAC	NA	False	NA	NA	False	NA	NA	NA	66339647	66357969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_66339772_66345923_66346055_66356772_66356873_66357787
transcript_84220.nic	chr7	+	801	3	ISM	ENSMUSG00000053091.17	ENSMUST00000128486.8	1419	5	-29	1297	20	248	5prime_fragment	FALSE	canonical	3	70	junction_2	8	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGTGGCGAACGGTGTT	NA	False	NA	NA	False	AGTAAA	-16	NA	66339667	66358353	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_66339772_66345923_66346055_66357787
transcript_84221.nic	chr7	+	1261	3	ISM	ENSMUSG00000053091.17	ENSMUST00000128486.8	1419	5	-29	837	20	708	intron_retention	FALSE	canonical	3	70	junction_2	8	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTGTATCATTACTAAATG	NA	False	NA	NA	False	NA	NA	NA	66339667	66358813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_66339772_66345923_66346055_66357787
transcript_84222.nic	chr7	+	1605	3	ISM	ENSMUSG00000053091.17	ENSMUST00000128486.8	1419	5	-203	667	-143	-667	intron_retention	FALSE	canonical	3	70	junction_2	8	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGATAGTTTTTTATTACA	NA	False	NA	NA	False	AGTAAA	-18	NA	66339493	66358983	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_66339772_66345923_66346055_66357787
transcript_84224.known	chr7	+	551	3	FSM	ENSMUSG00000043831.13	ENSMUST00000208698.2	551	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	14	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTGTGGTTTATCTAAA	NA	False	NA	NA	False	ATTAAA	-31	NA	66872361	66874375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_66872378_66873356_66873640_66874123
transcript_84225.known	chr7	+	2898	3	FSM	ENSMUSG00000043831.13	ENSMUST00000058771.13	2898	3	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	19.5	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAAACATGATTCTCCCT	NA	False	NA	NA	False	AATAAA	-16	NA	66872355	66878204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_66872378_66873356_66873640_66875611
transcript_84226.nic	chr7	+	955	3	ISM	ENSMUSG00000043831.13	ENSMUST00000179106.3	3319	4	-10	3836	3	0	5prime_fragment	FALSE	canonical	3	17	junction_2	6	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTGTGGTTTATCTAAA	NA	False	NA	NA	False	ATTAAA	-31	NA	66872366	66874375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_66872787_66873356_66873640_66874123
transcript_84227.known	chr7	+	2110	3	FSM	ENSMUSG00000043831.13	ENSMUST00000208998.2	2110	3	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	27.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAACCAGACACAATGTC	NA	False	NA	NA	False	AGTAAA	-24	NA	66872363	66877015	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_66872787_66873356_66873640_66875611
transcript_84228.known	chr7	+	631	4	FSM	ENSMUSG00000043831.13	ENSMUST00000207757.2	631	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.8977121983832	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTCTGTGGTTTATCTAA	NA	False	NA	NA	False	ATTAAA	-30	NA	66872343	66874374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_66872378_66872723_66872787_66873356_66873640_66874123
transcript_84229.known	chr7	+	3319	4	FSM	ENSMUSG00000043831.13	ENSMUST00000179106.3	3319	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	11.8977121983832	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGATTCTCCCTCTTTTCA	NA	False	NA	NA	False	AATAAA	-23	NA	66872376	66878211	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_66872787_66873356_66873640_66874123_66874150_66875611
transcript_84232.nic	chr7	-	1463	10	NIC	ENSMUSG00000030556.14	novel	2923	10	NA	NA	-62	-468	combination_of_known_junctions	FALSE	canonical	3	41	junction_5	13.5026289164118	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACGTGTTGTCTTCTGTGT	473	False	NA	NA	False	AATACA	-17	NA	67295078	67164621	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67209605_67209718_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
transcript_84233.known	chr7	-	2923	10	FSM	ENSMUSG00000030556.14	ENSMUST00000053950.10	2923	10	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_5	16.1894646431591	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTCTTCTCTCCTCCTGT	572	False	NA	-2	True	AATAAA	-16	NA	67294979	67163157	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67209605_67209813_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
transcript_84235.known	chr7	-	2761	9	FSM	ENSMUSG00000030556.14	ENSMUST00000187953.8	2761	9	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_7	25.6709953059869	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGTGTCTTCTCTCCTCCT	596	False	NA	-4	True	AATAAA	-14	NA	67294955	67163159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67209605_67209718_67267740_67267879_67268821_67268860_67290851_67291089_67294925
transcript_84237.nic	chr7	-	1351	9	NIC	ENSMUSG00000030556.14	novel	2923	10	NA	NA	-62	-468	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	20.648471493067	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACGTGTTGTCTTCTGTGT	473	False	NA	NA	False	AATACA	-17	NA	67295078	67164621	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
transcript_84239.nnic	chr7	-	1287	9	NIC	ENSMUSG00000030556.14	novel	2923	10	NA	NA	-62	-468	combination_of_known_splicesites	FALSE	canonical	2	10	junction_2	25.6124969497314	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACGTGTTGTCTTCTGTGT	473	False	NA	NA	False	AATACA	-17	NA	67295078	67164621	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_67164927_67179333_67179494_67195113_67195217_67209605_67209718_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
transcript_8425.known	chr10	-	3680	4	FSM	ENSMUSG00000046822.15	ENSMUST00000059551.7	3680	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	25.0377492776186	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTATTTGTTTTTTTT	NA	False	NA	NA	False	TTTAAA	-4	NA	80873142	80864373	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80867535_80869445_80869768_80870751_80870844_80873037
transcript_84250.known	chr7	-	1817	6	FSM	ENSMUSG00000030556.14	ENSMUST00000032775.12	1817	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	30.7662152368471	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATTTTGTTCTGGGCACA	596	False	NA	NA	False	AATAAA	-16	NA	67294955	67244146	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_67245480_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
transcript_84251.known	chr7	+	1915	11	FSM	ENSMUSG00000030555.17	ENSMUST00000107470.2	1915	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	23.6822718504792	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGCAGTTTGTGTGTTTG	NA	False	NA	10	True	AATAAA	-15	NA	67305194	67376321	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_67305318_67312074_67312275_67316910_67317035_67319445_67319597_67319799_67319926_67328641_67328820_67347971_67348078_67359071_67359200_67361101_67361252_67374981_67375065_67375775
transcript_84252.known	chr7	+	1991	10	FSM	ENSMUSG00000030555.17	ENSMUST00000126093.8	1991	10	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_1	24.6671671620895	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGTTTGTGTGTTTGAAA	NA	False	NA	13	True	AATAAA	-18	NA	67297197	67376324	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_67297594_67316910_67317035_67319445_67319597_67319799_67319926_67328641_67328820_67347971_67348078_67359071_67359200_67361101_67361252_67374981_67375065_67375775
transcript_84259.known	chr7	+	2216	11	FSM	ENSMUSG00000030555.17	ENSMUST00000107471.8	2216	11	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	12.2429571591181	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGTTTGTGTGTTTGAAA	NA	False	NA	13	True	AATAAA	-18	NA	67297172	67376324	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_67297594_67312074_67312275_67316910_67317035_67319445_67319597_67319799_67319926_67328641_67328820_67347971_67348078_67359071_67359200_67361101_67361252_67374981_67375065_67375775
transcript_84268.known	chr7	-	677	5	FSM	ENSMUSG00000030553.4	ENSMUST00000207874.2	677	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	2.12132034355964	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAGCAGCAGGGGGATGC	NA	False	NA	NA	False	AAGAAA	-36	NA	67913981	67886686	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_67886871_67887389_67887617_67888819_67888943_67908984_67909038_67913891
transcript_84274.known	chr7	-	953	4	FSM	ENSMUSG00000030553.4	ENSMUST00000032770.4	953	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	2.49443825784929	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTGTTTGTTTGTTTA	NA	False	NA	NA	False	AAAAAG	-15	NA	67913981	67886357	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_67886871_67887389_67887617_67888819_67888943_67913891
transcript_84278.known	chr7	+	2815	9	FSM	ENSMUSG00000074071.12	ENSMUST00000210558.2	2815	9	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_5	20.4328167417025	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGACTTTCAAGGTGCCCA	NA	False	NA	58	True	AATAAA	-29	NA	67925742	68012840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_67925790_67950580_67950712_67954299_67954400_67971567_67971654_67978969_67979148_67999981_68000165_68003356_68003492_68007932_68008037_68010989
transcript_8428.nic	chr10	-	2193	12	NIC	ENSMUSG00000004937.7	novel	1964	12	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	99	junction_11	260.894741448927	656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCCTCTCTGCTTCCTGT	4753	False	NA	-13	True	AATAAA	-15	NA	80896031	80879910	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_-_80880838_80882023_80882147_80882308_80882399_80883472_80883511_80884213_80884277_80884671_80884811_80885086_80885192_80885615_80885716_80886832_80886918_80887056_80887164_80887949_80888086_80895751
transcript_84282.nnic	chr7	+	2769	8	NIC	ENSMUSG00000074071.12	novel	2815	9	NA	NA	-45	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_3	51.6048565978997	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTAGGACTTTCAAGGT	NA	False	NA	53	True	AATAAA	-24	NA	67925697	68012835	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_67925790_67950580_67950712_67954299_67954400_67978969_67979148_67999981_68000165_68003356_68003492_68007932_68008037_68010989
transcript_8429.known	chr10	-	1964	12	FSM	ENSMUSG00000004937.7	ENSMUST00000218208.2	1964	12	0	0	0	0	multi-exon	TRUE	canonical	3	688	junction_11	105.465203223192	1185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCCTCTCTGCTTCCTGT	4772	False	NA	-13	True	AATAAA	-15	NA	80896012	80879910	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80880838_80882023_80882147_80882308_80882399_80883472_80883511_80884213_80884277_80884671_80884811_80885086_80885192_80885615_80885716_80886832_80886918_80887056_80887164_80887949_80888086_80895961
transcript_84291.nnic	chr7	+	573	5	NNC	ENSMUSG00000074071.12	novel	2815	9	NA	NA	-45	-28169	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_4	58.8451357377991	41	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGCCTTGGTCATGGTG	NA	False	NA	NA	False	NA	NA	NA	67925697	67975225	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_67925790_67950580_67950712_67954299_67954400_67971567_67971654_67975061
transcript_84299.known	chr7	-	1129	5	FSM	ENSMUSG00000042659.16	ENSMUST00000118110.3	1129	5	0	0	0	0	multi-exon	FALSE	canonical	3	754	junction_4	68.2289344779764	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGGCCTTCACTGTTAAA	NA	False	NA	69	True	NA	NA	NA	68398936	68391258	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_68391650_68392319_68392423_68394529_68394678_68394892_68394960_68398516
transcript_84300.known	chr7	-	3905	8	FSM	ENSMUSG00000042659.16	ENSMUST00000048068.15	3905	8	0	0	0	0	multi-exon	FALSE	canonical	3	375	junction_1	213.33809518495	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGGGTGGCTCATTTTTT	NA	False	NA	-3	True	AATAAA	-16	NA	68398989	68386742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_68389282_68389632_68389788_68390702_68390866_68391392_68391650_68392319_68392423_68394529_68394678_68394892_68394960_68398516
transcript_84301.known	chr7	-	5802	23	FSM	ENSMUSG00000032776.10	ENSMUST00000079323.8	5802	23	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_22	2.92220057462644	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTTTATCAGTACATAAC	NA	False	NA	NA	False	AATAAA	-24	NA	71956356	71727577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_71730606_71732834_71732933_71739918_71740029_71752891_71753002_71771445_71771488_71776885_71777009_71810887_71811008_71812945_71813021_71814357_71814460_71833552_71833656_71835510_71835614_71850093_71850188_71852036_71852224_71861342_71861474_71863691_71863857_71873768_71873805_71877727_71877840_71878219_71878297_71879075_71879219_71895208_71895318_71896855_71896919_71908846_71909380_71956218
transcript_84302.known	chr7	-	555	1	FSM	ENSMUSG00000081895.4	ENSMUST00000119383.2	555	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5208	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTCAGCATAAAATAAAGGC	7688	False	NA	NA	False	AAGAAA	-34	NA	72299059	72298504	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_72298500_72299100
transcript_84304.known	chr7	+	484	2	FSM	ENSMUSG00000108530.2	ENSMUST00000205600.2	484	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTGGGTCTCAGACTGAA	NA	False	NA	NA	False	CATAAA	-26	NA	72960277	72961702	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_72960460_72961400
transcript_84310.nic	chr7	-	1130	6	ISM	ENSMUSG00000078671.12	ENSMUST00000169922.9	9085	39	-61	81222	23	0	5prime_fragment	FALSE	canonical	3	19	junction_4	10.0677703589226	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGAGTGAGGCAGAACAAA	NA	False	NA	NA	False	NA	NA	NA	73191555	73157607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_73157662_73163837_73163900_73165473_73165561_73169224_73169457_73190519_73190653_73190993
transcript_84311.known	chr7	-	748	5	FSM	ENSMUSG00000078671.12	ENSMUST00000172704.6	748	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	17.5926120857592	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGAGTGAGGCAGAACAAA	NA	False	NA	NA	False	NA	NA	NA	73187369	73157607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_73157662_73163837_73163900_73165473_73165561_73169224_73169457_73187056
transcript_84312.known	chr7	-	896	5	FSM	ENSMUSG00000078671.12	ENSMUST00000197642.2	896	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	17.5926120857592	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAGACGAACAGGAACAGG	NA	False	NA	NA	False	NA	NA	NA	73191484	73157637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_73157662_73163837_73163900_73165473_73165561_73169224_73169457_73190993
transcript_84314.known	chr7	-	9085	39	FSM	ENSMUSG00000078671.12	ENSMUST00000169922.9	9085	39	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_11	12.1879612278661	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGGCTAACCAGTTACATT	NA	False	NA	2	True	ATTAAA	-25	NA	73191494	73076385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_73079749_73085482_73085727_73091333_73091548_73093982_73094083_73096882_73097062_73098904_73099040_73101446_73101588_73102846_73102976_73104076_73104200_73105238_73105390_73105521_73105661_73113383_73113524_73114095_73114138_73118203_73118380_73119305_73119477_73121544_73121638_73122759_73122857_73124253_73124403_73125091_73125242_73128406_73128479_73130148_73130302_73130708_73130872_73134156_73134346_73140226_73140418_73141082_73141173_73143172_73143390_73147454_73147580_73149341_73149521_73149686_73149732_73150682_73150784_73151656_73151883_73153128_73153263_73154735_73154877_73157553_73157662_73163837_73163900_73165473_73165561_73169224_73169457_73190519_73190653_73190993
transcript_84315.known	chr7	-	1571	9	FSM	ENSMUSG00000078671.12	ENSMUST00000026895.14	1571	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	14.3330910832242	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCAGAGTTGAATAAGCAG	NA	False	NA	NA	False	NA	NA	NA	73191493	73150727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_73150784_73151656_73151883_73153128_73153263_73154735_73154877_73163837_73163900_73165473_73165561_73169224_73169457_73190519_73190653_73190993
transcript_84316.known	chr7	-	519	5	FSM	ENSMUSG00000101970.9	ENSMUST00000187421.7	519	5	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_4	79.8780320238299	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGATTCTTTTAATGTGGA	NA	False	NA	NA	False	NA	NA	NA	73207721	73194011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_73194131_73199344_73199401_73205002_73205082_73205602_73205669_73207522
transcript_84317.known	chr7	-	5140	5	FSM	ENSMUSG00000101970.9	ENSMUST00000184587.5	5140	5	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_4	46.3384289763906	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTTTTGTTGTATGACT	NA	False	NA	NA	False	AATAAA	-10	NA	73208143	73189548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_73194131_73199344_73199401_73205002_73205082_73205602_73205669_73207786
transcript_84323.known	chr7	-	5368	6	FSM	ENSMUSG00000025789.10	ENSMUST00000026896.10	5368	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	2.31516738055805	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGGTGTCTATAGAGGC	NA	False	NA	NA	False	NA	NA	NA	73663422	73588866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_73593213_73610439_73610734_73616488_73616747_73621665_73621795_73626405_73626469_73663144
transcript_84327.nic	chr7	+	1279	4	ISM	ENSMUSG00000066406.17	ENSMUST00000208187.2	1381	6	-20	22925	3	0	5prime_fragment	FALSE	canonical	3	13	junction_3	3.29983164553722	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATAACATCCTGTTTCT	NA	False	NA	NA	False	AATAAA	-14	NA	75105284	75230124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_75105497_75184555_75184600_75219631_75219780_75229249
transcript_8433.known	chr10	-	642	4	FSM	ENSMUSG00000004937.7	ENSMUST00000220202.2	642	4	0	0	0	0	multi-exon	FALSE	canonical	3	688	junction_3	126.67631542198	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTATGCTTTAAAGTGGCA	4769	False	NA	NA	False	AATATA	-2	NA	80896015	80886572	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80886918_80887056_80887164_80887949_80888086_80895961
transcript_84330.known	chr7	-	656	3	FSM	ENSMUSG00000097415.3	ENSMUST00000181224.2	656	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	6.5	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGGAGGTGTTGTGTGAC	NA	False	NA	NA	False	NA	NA	NA	75431847	75419509	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_75419986_75430372_75430505_75431799
transcript_84331.known	chr7	+	3385	3	FSM	ENSMUSG00000055652.15	ENSMUST00000092073.11	3385	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	16	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCCTTTGGGTTCTGATT	NA	False	NA	16	True	AATAAA	-17	NA	75498085	75523878	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_75498233_75515084_75516890_75522445
transcript_84332.known	chr7	+	3403	3	FSM	ENSMUSG00000055652.15	ENSMUST00000171155.4	3403	3	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTTTGGGTTCTGATTC	NA	False	NA	17	True	AATAAA	-18	NA	75498057	75523879	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_75498222_75515084_75516890_75522445
transcript_84333.known	chr7	+	2299	2	FSM	ENSMUSG00000055652.15	ENSMUST00000206019.2	2299	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGGCTGAAGGAGAAGCA	NA	False	NA	NA	False	AATAAA	-18	NA	75498088	75517239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_75498233_75515084
transcript_84335.known	chr7	+	905	2	FSM	ENSMUSG00000055652.15	ENSMUST00000206418.2	905	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCCCATCATGCCTGCTA	NA	False	NA	NA	False	NA	NA	NA	75498144	75523273	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_75498222_75522445
transcript_84339.nnic	chr7	+	819	2	Genic_Genomic	ENSMUSG00000052629.6	novel	2205	1	NA	NA	-249	-1510	multi-exon	FALSE	canonical	3	4	junction_1	0	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGAGCTATTTCCTGAGAA	NA	False	NA	16	True	AATAAA	-23	NA	78228328	78229272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr7_+_78228734_78228858
transcript_8434.known	chr10	+	2832	13	FSM	ENSMUSG00000004929.13	ENSMUST00000005057.7	2832	13	0	0	0	0	multi-exon	TRUE	canonical	3	459	junction_3	51.2387521532504	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAATATCAGACAGTGAGCA	5450	False	NA	NA	False	NA	NA	NA	80905868	80918393	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80906113_80908986_80909200_80911344_80911494_80912776_80912885_80913746_80913850_80914303_80914465_80915291_80915428_80915704_80916072_80916246_80916449_80916860_80917048_80917140_80917270_80917433_80917571_80917697
transcript_84345.known	chr7	+	825	6	FSM	ENSMUSG00000030611.11	ENSMUST00000133553.8	825	6	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	143.488814895099	2655	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCTGTGAGTTTTTGTTC	NA	False	NA	3	True	AATAAA	-16	NA	78433103	78442737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_78433172_78433320_78433435_78438422_78438522_78440384_78440515_78441621_78441688_78442389
transcript_84350.known	chr7	-	1134	4	FSM	ENSMUSG00000030612.7	ENSMUST00000032841.7	1134	4	0	0	0	0	multi-exon	FALSE	canonical	3	446	junction_2	24.7296493213219	2020	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAACAGACCTACTGGGC	NA	False	NA	NA	False	AGTAAA	-18	NA	78432837	78424983	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_78425474_78430185_78430360_78431147_78431335_78432554
transcript_84359.known	chr7	-	2269	5	FSM	ENSMUSG00000030610.14	ENSMUST00000032839.13	2269	5	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_2	8.89873586527884	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACACTGTCTCTTCCTTGA	NA	False	NA	-3	True	AATAAA	-18	NA	78497011	78477221	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_78477861_78483858_78484051_78489752_78489941_78492919_78494013_78496854
transcript_84361.known	chr7	+	277	1	FSM	ENSMUSG00000108791.2	ENSMUST00000205762.2	277	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAATACCATTGACTGGCC	NA	False	NA	NA	False	AATAAA	-20	NA	78497001	78497278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_78497000_78497300
transcript_84366.known	chr7	+	2007	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107421.8	2007	4	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_1	165.023903992388	1142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGAACTGGTCCTTTCTGG	NA	False	NA	NA	False	AATAAA	-18	NA	78545681	78558129	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_78545763_78552091_78552579_78555590_78555792_78556891
transcript_84368.known	chr7	+	4956	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107425.8	4956	4	0	0	0	0	multi-exon	FALSE	canonical	3	272	junction_1	184.819431397844	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTGTAATCTGATGGAAT	NA	False	NA	2	True	NA	NA	NA	78545674	78560957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_78545763_78551977_78552579_78555590_78555792_78556891
transcript_84370.known	chr7	+	2230	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107423.2	2230	4	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	306.901721511409	770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGAACTGGTCCTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	78545756	78558126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_78545950_78551977_78552579_78555590_78555792_78556891
transcript_84374.known	chr7	+	4428	3	FSM	ENSMUSG00000030609.19	ENSMUST00000123824.2	4428	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	333	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTGTAATCTGATGGAAT	NA	False	NA	2	True	NA	NA	NA	78545601	78560957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_78545763_78555590_78555792_78556891
transcript_84375.known	chr7	-	3358	5	FSM	ENSMUSG00000030606.9	ENSMUST00000206092.2	3358	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	1.87082869338697	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAGATCTCTTCCAATGTC	2275	False	NA	NA	False	AATAGA	-44	NA	78780766	78764849	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_78767242_78767596_78767900_78771394_78771764_78773117_78773300_78780654
transcript_84377.known	chr7	-	2125	10	FSM	ENSMUSG00000030605.16	ENSMUST00000032825.14	2125	10	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_6	379.595691346581	619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTCTGTGCCTCCTCATT	NA	False	NA	-6	True	AATACA	-18	NA	78798808	78783516	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792799_78793025_78793137_78794994_78795127_78795369_78795493_78798642
transcript_84378.known	chr7	-	2008	9	FSM	ENSMUSG00000030605.16	ENSMUST00000107409.5	2008	9	0	0	0	0	multi-exon	TRUE	canonical	3	790	junction_6	144.155948541848	1798	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTGTGCCTCCTCATTG	NA	False	NA	-5	True	AATACA	-19	NA	78798801	78783515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792799_78794994_78795127_78795369_78795493_78798642
transcript_84379.nnic	chr7	-	1017	3	NNC	ENSMUSG00000108387.2	novel	235	2	NA	NA	85	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTATTCCTCTGTAAT	NA	False	NA	NA	False	AATAAA	-15	NA	78922698	78921439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_78922092_78922195_78922308_78922445
transcript_84381.known	chr7	+	6877	11	FSM	ENSMUSG00000039202.13	ENSMUST00000037315.13	6877	11	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_5	6.39140047250992	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTTGTATGTGCTCTGTG	2722	False	NA	22	True	ATTAAA	-17	NA	78922946	79015256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_78923088_78944255_78944356_78946755_78946956_78973216_78973393_78975181_78975350_78998007_78998192_79000498_79000592_79003737_79003849_79005549_79005620_79007812_79007898_79009707
transcript_84389.known	chr7	-	2142	9	FSM	ENSMUSG00000039194.17	ENSMUST00000179243.3	2142	9	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_8	4.45638586749397	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCTTTCATGATGAACTT	NA	False	NA	-15	True	AATAAA	-22	NA	79036796	79024617	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_79025467_79025644_79025756_79026974_79027134_79029706_79029886_79031380_79031586_79033359_79033489_79033681_79033711_79034406_79034528_79036436
transcript_84390.known	chr7	+	4645	38	FSM	ENSMUSG00000039187.17	ENSMUST00000036865.13	4645	38	0	0	0	0	multi-exon	TRUE	canonical	3	260	junction_14	37.7798783892034	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGTGTAGTTTTGAAAAT	NA	False	NA	12	True	AATAAA	-13	NA	79042059	79100012	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_79042140_79045640_79045744_79048883_79048957_79051572_79051704_79052016_79052174_79052258_79052317_79054890_79054933_79055914_79056039_79057071_79057158_79058887_79059015_79060908_79061002_79062366_79062504_79067583_79067765_79070010_79070099_79073953_79074082_79074641_79074713_79075854_79075970_79076874_79076998_79080177_79080247_79081861_79081964_79082930_79083108_79083180_79083303_79083883_79084049_79084944_79085125_79087981_79088149_79089365_79089443_79090378_79090496_79093488_79093541_79093695_79093824_79093905_79093975_79094148_79094258_79094422_79094611_79095284_79095339_79095417_79095478_79097997_79098061_79098567_79098664_79098820_79098929_79099387
transcript_84396.nnic	chr7	+	647	4	NNC	ENSMUSG00000039187.17	novel	1301	10	NA	NA	-40	-2235	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_3	166.391105531516	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTATTTATTTATTTAT	NA	False	NA	NA	False	ATTAAA	-6	NA	79042015	79049399	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_79042140_79045640_79045744_79048883_79048957_79049052
transcript_84398.nnic	chr7	-	878	4	Antisense	novelGene_ENSMUSG00000039187.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	5.71547606649408	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGTTGTCCTGTTTAAT	NA	False	NA	NA	False	TATAAA	-45	NA	79048201	79046094	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr7_-_79046493_79047177_79047262_79047383_79047471_79047892
transcript_844.known	chr1	+	2728	17	FSM	ENSMUSG00000025915.15	ENSMUST00000097826.6	2728	17	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	27.8654692226777	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTGGTGTGAATGTGTG	9939	False	NA	NA	False	AATAAA	-11	NA	9918621	9970078	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_9918774_9935355_9935574_9938607_9938692_9941854_9941928_9942482_9942559_9947390_9947479_9949250_9949301_9950556_9950615_9951802_9951887_9951984_9952117_9954631_9954745_9954849_9954887_9955891_9955979_9956271_9956368_9959094_9959251_9961585_9961676_9968944
transcript_8440.known	chr10	+	1877	2	FSM	ENSMUSG00000004929.13	ENSMUST00000167658.2	1877	2	0	0	0	0	multi-exon	FALSE	canonical	3	528	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGTGTGGGCTGCCCCCTT	5542	False	NA	NA	False	AAGAAA	-1	NA	80905960	80910711	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80906113_80908986
transcript_84401.nnic	chr7	-	873	4	Antisense	novelGene_ENSMUSG00000039187.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	5.71547606649408	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACTGATTTGTATATACT	NA	False	NA	NA	False	NA	NA	NA	79048269	79046167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr7_-_79046493_79047177_79047262_79047383_79047471_79047892
transcript_84404.nnic	chr7	-	846	4	Antisense	novelGene_ENSMUSG00000039187.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	2.49443825784929	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACTGATTTGTATATACT	NA	False	NA	NA	False	NA	NA	NA	79048212	79046167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr7_-_79046493_79047177_79047262_79047383_79047501_79047892
transcript_84407.nic	chr7	+	743	3	ISM	ENSMUSG00000039187.17	ENSMUST00000118959.8	1301	10	-40	9931	-40	-2235	5prime_fragment	FALSE	canonical	3	350	junction_1	10.5	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTATTTATTTATTTAT	NA	False	NA	NA	False	ATTAAA	-6	NA	79042015	79049399	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_79042140_79045640_79045744_79048883
transcript_84408.nic	chr7	+	896	3	ISM	ENSMUSG00000039187.17	ENSMUST00000118959.8	1301	10	-40	9778	-40	-2082	5prime_fragment	FALSE	canonical	3	350	junction_1	10.5	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTAAATATTTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	79042015	79049552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_79042140_79045640_79045744_79048883
transcript_84409.nnic	chr7	-	862	3	Antisense	novelGene_ENSMUSG00000039187.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	15	junction_2	2	67	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGTTGTCCTGTTTAAT	NA	False	NA	NA	False	TATAAA	-45	NA	79048269	79046094	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr7_-_79046493_79047383_79047471_79047892
transcript_84412.nnic	chr7	-	837	3	Antisense	novelGene_ENSMUSG00000039187.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	8	junction_2	5.5	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGTTGTCCTGTTTAAT	NA	False	NA	NA	False	TATAAA	-45	NA	79048214	79046094	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr7_-_79046493_79047383_79047501_79047892
transcript_84416.nnic	chr7	-	789	3	Antisense	novelGene_ENSMUSG00000039187.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	15	junction_2	2	130	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACTGATTTGTATATACT	NA	False	NA	NA	False	NA	NA	NA	79048269	79046167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr7_-_79046493_79047383_79047471_79047892
transcript_84420.nnic	chr7	-	828	3	Antisense	novelGene_ENSMUSG00000039187.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	8	junction_2	5.5	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACTGATTTGTATATACT	NA	False	NA	NA	False	NA	NA	NA	79048278	79046167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr7_-_79046493_79047383_79047501_79047892
transcript_84424.known	chr7	+	479	4	FSM	ENSMUSG00000097023.9	ENSMUST00000182317.2	479	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	2.16024689946929	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCCAAAGCCACAGGATGA	NA	False	NA	NA	False	NA	NA	NA	79165182	79181007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_79165421_79173664_79173725_79177510_79177618_79180933
transcript_84426.known	chr7	+	1847	2	FSM	ENSMUSG00000097023.9	ENSMUST00000180881.3	1847	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTTCTTGTTTGTATAT	NA	False	NA	NA	False	AATAAA	-16	NA	79164979	79182339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_79165421_79180933
transcript_84427.known	chr7	-	2090	11	FSM	ENSMUSG00000030549.7	ENSMUST00000032766.5	2090	11	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_10	3.38969025133566	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGGGGAGTGGATGTTCT	NA	False	NA	NA	False	AATAAA	-21	NA	79267405	79243110	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_79243549_79244529_79244737_79248288_79248363_79248717_79248843_79249104_79249242_79249426_79249565_79250241_79250409_79251334_79251483_79253487_79253639_79257292_79257480_79267087
transcript_84429.known	chr7	+	7199	22	FSM	ENSMUSG00000046591.11	ENSMUST00000035977.9	7199	22	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_6	27.6640028223357	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTATTACTTTCCCAGTT	1924	False	NA	16	True	ATTAAA	-26	NA	79309943	79347896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_79310751_79315410_79315688_79317407_79317647_79319195_79319431_79320613_79320744_79325019_79325157_79326974_79327194_79328762_79328915_79330655_79330757_79331557_79331652_79331737_79331818_79331996_79332225_79332703_79332801_79333951_79334010_79335524_79335687_79337973_79338065_79339655_79339715_79340619_79340752_79341569_79341728_79343448_79345571_79345682_79345809_79346401
transcript_8443.known	chr10	+	1556	11	FSM	ENSMUSG00000035027.19	ENSMUST00000105331.8	1556	11	0	0	0	0	multi-exon	FALSE	canonical	3	562	junction_7	62.3128397683816	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCGGCTGTGCTCCTGCC	1132	False	NA	13	True	NA	NA	NA	80941780	80959717	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_80942073_80944581_80944793_80950859_80951007_80953985_80954064_80954942_80954995_80955090_80955216_80955323_80955538_80956879_80956945_80957736_80957799_80958400_80958447_80959453
transcript_84431.nic	chr7	+	2125	7	NIC	ENSMUSG00000046591.11	novel	3655	20	NA	NA	-96	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_6	91.3699744020005	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATGGAAACTAAAGGCAAA	1828	False	NA	NA	False	AATAAA	-17	NA	79309847	79325461	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_79310751_79315410_79315688_79317407_79317647_79319195_79319431_79320613_79320744_79325019_79325157_79325257
transcript_84433.known	chr7	+	1452	1	FSM	ENSMUSG00000046591.11	ENSMUST00000205750.2	1452	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	133	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	1950	False	NA	NA	False	NA	NA	NA	79309969	79311421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_79310000_79311400
transcript_84434.known	chr7	-	2241	3	FSM	ENSMUSG00000030545.10	ENSMUST00000032761.8	2241	3	0	0	0	0	multi-exon	TRUE	canonical	3	20	junction_1	0	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCGTCTGTGAGTGTG	NA	False	NA	NA	False	AATAAA	-18	NA	79392828	79385704	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_79387659_79389912_79390029_79392657
transcript_84436.known	chr7	-	1044	2	FSM	ENSMUSG00000030545.10	ENSMUST00000150606.2	1044	2	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CATGAAAGACCCAAAGAAAC	NA	False	NA	NA	False	AATAAA	-19	NA	79392879	79386836	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_79387659_79392657
transcript_84441.nic	chr7	+	1096	6	ISM	ENSMUSG00000039099.8	ENSMUST00000035622.8	2285	18	29125	0	29125	0	3prime_fragment	FALSE	canonical	3	7	junction_2	3.6	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGGTGCGGTTCATCCTT	NA	False	NA	1	True	AATAAA	-16	NA	79422035	79435698	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_79422269_79423100_79423315_79425259_79425324_79426377_79426535_79426860_79427054_79435463
transcript_84442.nnic	chr7	+	1091	5	NIC	ENSMUSG00000039099.8	novel	2285	18	NA	NA	28916	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_1	5.09901951359278	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGGTGCGGTTCATCCTT	NA	False	NA	1	True	AATAAA	-16	NA	79421826	79435698	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_79422269_79425259_79425324_79426377_79426535_79426860_79427054_79435463
transcript_84445.known	chr7	+	1944	2	FSM	ENSMUSG00000030543.11	ENSMUST00000107394.3	1944	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTGCTTCTGATTTTT	NA	False	NA	NA	False	ATTAAA	-21	NA	79460474	79463187	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_79461508_79462276
transcript_84446.known	chr7	-	3797	21	FSM	ENSMUSG00000039062.16	ENSMUST00000107392.8	3797	21	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_7	3.71853465763061	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCCAGACTTGTCACTCA	6800	False	NA	-1	True	AATAAA	-16	NA	79497958	79471550	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_79472125_79475050_79475133_79475453_79475595_79476339_79476508_79476618_79476730_79477319_79477412_79483334_79483483_79484877_79484934_79485034_79485169_79485716_79485791_79485978_79486155_79487989_79488056_79488160_79488227_79488394_79488539_79488635_79488750_79488910_79489066_79489149_79489277_79490620_79490758_79490833_79490977_79491385_79492409_79497892
transcript_84447.known	chr7	-	5813	6	FSM	ENSMUSG00000063801.8	ENSMUST00000075657.8	5813	6	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_1	30.5653398476117	558	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTGGCCATGCATTTC	NA	False	NA	-2	True	AATAAA	-14	NA	79570397	79525072	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_79530361_79532213_79532322_79559582_79559655_79564894_79565007_79565763_79565856_79570256
transcript_84451.known	chr7	-	2277	6	FSM	ENSMUSG00000039043.6	ENSMUST00000048731.6	2277	6	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	5.76194411635517	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGACTGAGGCTTTGAGG	9893	False	NA	NA	False	NA	NA	NA	79585107	79575108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_79576599_79577373_79577538_79577919_79578127_79579320_79579454_79581550_79581627_79584900
transcript_84453.nic	chr7	+	2314	4	ISM	ENSMUSG00000048897.16	ENSMUST00000166250.8	3606	6	-64	4984	-44	0	5prime_fragment	TRUE	canonical	3	198	junction_1	67.6214955961983	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTACACGTTGAGTGCTGT	NA	False	NA	1	True	AATAAA	-9	NA	79674517	79736594	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_79674735_79730796_79732289_79735698_79735891_79736181
transcript_84464.known	chr7	-	1745	11	FSM	ENSMUSG00000030541.17	ENSMUST00000107384.10	1745	11	0	0	0	0	multi-exon	FALSE	canonical	3	1495	junction_5	201.26112391617	3773	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGATGTGTTTGTCC	NA	False	NA	-5	True	AAAAAG	-13	NA	79765140	79744593	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_79744952_79745368_79745462_79745546_79745645_79745770_79745884_79747551_79747704_79747883_79748021_79748518_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
transcript_84466.nic	chr7	-	954	6	NIC	ENSMUSG00000030538.16	novel	1047	7	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_5	305.980130073833	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTCCTTGTATGATGGT	2097	False	NA	-12	True	AATAAA	-15	NA	79882515	79876906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878297_79880063_79880173_79882257
transcript_84467.known	chr7	-	702	5	FSM	ENSMUSG00000030538.16	ENSMUST00000071457.12	702	5	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_4	297.709904941035	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTCCTTGTATGATGGT	2240	False	NA	-12	True	AATAAA	-15	NA	79882372	79876906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878297_79882257
transcript_84469.known	chr7	-	487	5	FSM	ENSMUSG00000030538.16	ENSMUST00000205996.2	487	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_4	331.461441950644	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGGGATGGGACCATCA	2267	False	NA	NA	False	CATAAA	-37	NA	79882345	79877810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_79877831_79877909_79878029_79878145_79878297_79880063_79880173_79882257
transcript_84472.known	chr7	-	1016	1	FSM	ENSMUSG00000030538.16	ENSMUST00000206618.2	1016	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGCTAAGAAT	2283	False	NA	NA	False	NA	NA	NA	79882329	79881313	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_79881300_79882300
transcript_84473.known	chr7	-	566	4	FSM	ENSMUSG00000030538.16	ENSMUST00000206211.2	566	4	0	0	0	0	multi-exon	FALSE	canonical	3	721	junction_1	61.0810026840497	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGACTTTTGAACTTCT	4504	False	NA	NA	False	NA	NA	NA	79880108	79877579	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_79877831_79877909_79878029_79878145_79878297_79880063
transcript_84474.known	chr7	-	772	7	FSM	ENSMUSG00000030538.16	ENSMUST00000206084.2	772	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	282.60317683203	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTCCTTGTATGATGGT	2299	False	NA	-12	True	AATAAA	-15	NA	79882313	79876906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878282_79880063_79880173_79882091_79882127_79882257
transcript_84475.known	chr7	+	4189	2	FSM	ENSMUSG00000050973.12	ENSMUST00000062915.9	4189	2	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	0	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAAAACAAAAACA	NA	False	NA	NA	False	NA	NA	NA	79882612	79891809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_79882954_79887961
transcript_8448.nnic	chr10	+	1328	11	NNC	ENSMUSG00000035027.19	novel	662	7	NA	NA	345	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	211.816524379001	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCGGCTGTGCTCCTGCC	1875	False	NA	13	True	NA	NA	NA	80942523	80959717	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_80942588_80944581_80944793_80950859_80951007_80953985_80954064_80954942_80954995_80955090_80955216_80955323_80955538_80956879_80956945_80957736_80957799_80958400_80958447_80959453
transcript_84482.nnic	chr7	+	972	4	NNC	ENSMUSG00000045467.14	novel	3010	15	NA	NA	9301	0	at_least_one_novel_splicesite	TRUE	canonical	2	7	junction_1	4.64279609239471	20	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGCCGTTTTCACTATT	NA	False	NA	NA	False	AGTAAA	-20	NA	79906436	79908943	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_79906489_79906592_79906779_79907924_79908106_79908390
transcript_84483.nnic	chr7	+	1076	4	NNC	ENSMUSG00000045467.14	novel	3010	15	NA	NA	9301	104	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	4.64279609239471	20	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGAGATTGTTTTATTTCC	NA	False	NA	NA	False	NA	NA	NA	79906436	79909047	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_79906489_79906592_79906779_79907924_79908106_79908390
transcript_84484.nic	chr7	+	1088	3	ISM	ENSMUSG00000045467.14	ENSMUST00000107381.8	2392	13	10122	0	9289	0	3prime_fragment	FALSE	canonical	2	15	junction_2	1.5	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGCCGTTTTCACTATT	NA	False	NA	NA	False	AGTAAA	-20	NA	79906424	79908943	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_79906779_79907924_79908106_79908390
transcript_84485.nic	chr7	+	1192	3	ISM	ENSMUSG00000045467.14	ENSMUST00000107381.8	2392	13	10122	-104	9289	104	3prime_fragment	FALSE	canonical	2	15	junction_2	1.5	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGAGATTGTTTTATTTCC	NA	False	NA	NA	False	NA	NA	NA	79906424	79909047	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_79906779_79907924_79908106_79908390
transcript_84488.known	chr7	+	1317	3	FSM	ENSMUSG00000047084.9	ENSMUST00000117989.2	1317	3	0	0	0	0	multi-exon	FALSE	canonical	3	448	junction_2	14	2206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGTTGCTTGGTTCTCT	NA	False	NA	13	True	AATAAA	-13	NA	79910962	79915122	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_79911172_79911568_79911680_79914125
transcript_84489.known	chr7	+	1709	2	FSM	ENSMUSG00000047084.9	ENSMUST00000138005.2	1709	2	0	0	0	0	multi-exon	FALSE	canonical	3	448	junction_1	0	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGTTGCTTGGTTCTCT	NA	False	NA	13	True	AATAAA	-13	NA	79910967	79915122	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_79911680_79914125
transcript_84490.known	chr7	+	2554	23	FSM	ENSMUSG00000030534.14	ENSMUST00000150585.8	2554	23	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_6	27.6695375058045	179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTCTTTGTTTTTT	NA	False	NA	11	True	AATAAA	-15	NA	79919426	79941321	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_79919828_79923976_79924058_79924371_79924434_79925793_79925844_79926145_79926214_79929719_79929782_79932232_79932328_79933175_79933281_79933727_79933825_79934031_79934110_79934289_79934364_79934765_79934853_79934997_79935089_79935303_79935379_79935581_79935647_79935758_79935814_79936855_79936903_79937525_79937659_79938147_79938222_79939729_79939832_79940015_79940092_79940195_79940313_79940862
transcript_84495.nic	chr7	+	2997	15	NIC	ENSMUSG00000038943.17	novel	3008	15	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	61	junction_13	288.475240333922	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACACTGTTTTGTCTTC	NA	False	NA	13	True	AATAAA	-23	NA	79944186	79966002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962880_79963274_79963317_79964861
transcript_84496.known	chr7	+	3008	15	FSM	ENSMUSG00000038943.17	ENSMUST00000174172.8	3008	15	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_13	238.868890688544	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACACTGTTTTGTCTTC	NA	False	NA	13	True	AATAAA	-23	NA	79944252	79966002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962957_79963274_79963317_79964861
transcript_84497.known	chr7	+	2912	14	FSM	ENSMUSG00000038943.17	ENSMUST00000173824.8	2912	14	0	0	0	0	multi-exon	FALSE	canonical	3	387	junction_13	177.415201846273	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACTACACTGTTTTGTC	NA	False	NA	10	True	AATAAA	-20	NA	79944226	79965999	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962880_79964861
transcript_84498.known	chr7	+	3016	14	FSM	ENSMUSG00000038943.17	ENSMUST00000047558.14	3016	14	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_11	336.527023981466	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTTTTGTCTTCAATGG	NA	False	NA	18	True	AATAAA	-28	NA	79944198	79966007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960920_79961964_79962076_79962779_79962957_79964861
transcript_8450.known	chr10	-	2571	11	FSM	ENSMUSG00000004934.15	ENSMUST00000005064.14	2571	11	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_2	40.6104666311531	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGTGGTTTCTCTGTAG	NA	False	NA	2	True	AATAAA	-37	NA	81003757	80989099	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_80990207_80990281_80990413_80991424_80991586_80991666_80991741_80992845_80992952_80993060_80993190_80993270_80993362_80993484_80993527_80993766_80993852_80999618_81000025_81003518
transcript_84511.known	chr7	-	3336	9	FSM	ENSMUSG00000038930.12	ENSMUST00000047362.11	3336	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	12.4197423483742	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTTCTGCACACCAGAAG	NA	False	NA	NA	False	ATTAAA	-8	NA	79974172	79965337	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_79966799_79967200_79967231_79968606_79968775_79968993_79969090_79969839_79969962_79970049_79970447_79970609_79970930_79971024_79971092_79973497
transcript_84521.known	chr7	+	595	4	FSM	ENSMUSG00000038943.17	ENSMUST00000206178.2	595	4	0	0	0	0	multi-exon	FALSE	canonical	3	974	junction_3	48.0578355271599	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTGAAACCTCATAGACCT	NA	False	NA	NA	False	NA	NA	NA	79944260	79954368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108
transcript_84522.known	chr7	+	3645	3	FSM	ENSMUSG00000038943.17	ENSMUST00000173914.3	3645	3	0	0	0	0	multi-exon	FALSE	canonical	3	1067	junction_1	8	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAAGGAGAGAAAGCAG	NA	False	NA	NA	False	AAAAAG	-34	NA	79944221	79954178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_79944340_79950048_79950182_79950784
transcript_84525.known	chr7	-	3260	20	FSM	ENSMUSG00000030533.17	ENSMUST00000032748.15	3260	20	0	0	0	0	multi-exon	TRUE	canonical	3	61	junction_19	11.9833679753749	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCATCTGTTTGTTGTTG	NA	False	NA	NA	False	AATAAA	-13	NA	79989967	79975042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_79975626_79975760_79975917_79976056_79976175_79977330_79977447_79977665_79977780_79978200_79978268_79978440_79978569_79978769_79978911_79979253_79979396_79980085_79980181_79981300_79981602_79982724_79982897_79983767_79983939_79984442_79984612_79986053_79986222_79986672_79986766_79988588_79988765_79989061_79989099_79989298_79989461_79989816
transcript_84532.nic	chr7	-	1000	3	ISM	ENSMUSG00000030533.17	ENSMUST00000238999.2	3180	20	13605	-4	13000	0	3prime_fragment	FALSE	canonical	3	89	junction_1	7	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATCTGTTTGTTGTTGTAG	NA	False	NA	NA	False	AATAAA	-16	NA	79976314	79975039	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_79975626_79975760_79975917_79976056
transcript_84533.known	chr7	+	1510	4	FSM	ENSMUSG00000030532.7	ENSMUST00000032747.7	1510	4	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	13.490737563232	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGAAGGCTTCTTAAATC	NA	False	NA	NA	False	AATAAA	-21	NA	79992851	79996462	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_79992998_79993286_79993343_79993463_79993705_79995395
transcript_84534.known	chr7	+	1471	3	FSM	ENSMUSG00000030532.7	ENSMUST00000205744.2	1471	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	57	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGTTCTTCCTTCTCTG	NA	False	NA	17	True	AATAAA	-22	NA	79992871	79995850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_79993343_79993463_79993843_79995229
transcript_84537.known	chr7	-	2890	18	FSM	ENSMUSG00000053158.11	ENSMUST00000206744.2	2890	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	5.25870509144165	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGGGTGATATTGACATGTG	NA	False	NA	-9	True	AATAAA	-15	NA	80037619	80027510	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_80027823_80028289_80028413_80028525_80028684_80029358_80029483_80029565_80029661_80029956_80030076_80030586_80030641_80030912_80031036_80031348_80031559_80032060_80032180_80032268_80032456_80032558_80032682_80032817_80032938_80033016_80033155_80033581_80034036_80036558_80036733_80036869_80037092_80037584
transcript_84541.nic	chr7	-	969	5	ISM	ENSMUSG00000053158.11	ENSMUST00000206728.2	2707	18	7350	-10	367	0	3prime_fragment	FALSE	canonical	2	10	junction_1	2.77263412660235	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGGGTGATATTGACATGTG	NA	False	NA	-9	True	AATAAA	-15	NA	80029817	80027510	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_80027823_80028289_80028413_80028525_80028684_80029358_80029483_80029565
transcript_84542.known	chr7	-	4598	22	FSM	ENSMUSG00000030528.13	ENSMUST00000081314.11	4598	22	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_6	41.4509518092853	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGGGAAGGCAGCATGGG	NA	False	NA	66	True	NA	NA	NA	80184867	80104740	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_80105185_80108560_80108745_80110477_80110601_80113520_80113714_80114485_80114686_80116522_80116662_80119337_80119529_80123776_80123973_80130082_80130244_80131151_80131259_80143849_80143999_80144180_80144280_80145737_80145852_80147152_80147272_80149500_80149693_80152030_80152702_80152987_80153121_80155566_80155695_80159151_80159312_80162526_80163243_80164336_80164439_80184790
transcript_84545.known	chr7	-	3581	15	FSM	ENSMUSG00000030528.13	ENSMUST00000205263.2	3581	15	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_12	39.8425472507541	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGGGCAAGCATGGTAT	NA	False	NA	NA	False	AATAAA	-14	NA	80164440	80118996	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_80119529_80123776_80123973_80130082_80130244_80131151_80131259_80143849_80143999_80144180_80144280_80145737_80145852_80147152_80147272_80149500_80149693_80152030_80152702_80152987_80153121_80155566_80155695_80159151_80159312_80162526_80163243_80164336
transcript_84546.known	chr7	-	7444	38	FSM	ENSMUSG00000030536.11	ENSMUST00000167377.3	7444	38	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_37	55.7931586507513	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTATTTTTCTTGGTT	NA	False	NA	-9	True	AATAAA	-19	NA	80453164	80361330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_80363694_80366758_80366868_80370616_80370740_80372709_80372877_80373526_80373740_80375334_80375423_80375713_80375850_80376486_80376590_80377700_80377834_80378596_80378830_80379816_80379902_80379989_80380131_80383733_80383959_80385221_80385386_80386009_80386166_80387861_80388071_80388420_80388491_80388580_80388653_80388742_80388827_80389537_80389709_80392783_80392927_80393540_80393709_80393865_80393957_80398571_80398736_80401073_80401199_80401616_80401778_80401937_80402102_80405927_80406013_80407151_80407316_80407921_80408007_80409505_80409685_80410562_80410677_80412245_80412314_80415042_80415120_80416632_80416711_80418056_80418214_80449597_80449698_80452888
transcript_84548.known	chr7	+	1582	3	FSM	ENSMUSG00000038797.14	ENSMUST00000147125.2	1582	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	2.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGCTTCAGCCAGAGCTC	2921	False	NA	NA	False	NA	NA	NA	80510700	80525636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_80510826_80512915_80513420_80524683
transcript_84549.known	chr7	+	699	3	FSM	ENSMUSG00000038797.14	ENSMUST00000132163.8	699	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	2	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAAGACATGTTTGAGG	2888	False	NA	NA	False	NA	NA	NA	80510667	80524717	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_80510826_80512912_80513420_80524683
transcript_84554.known	chr7	-	2114	8	FSM	ENSMUSG00000025722.17	ENSMUST00000026816.15	2114	8	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_7	16.071269840486	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTTTGTGTGTATGAGT	NA	False	NA	-3	True	AATAAA	-16	NA	80551017	80540470	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095_80550185_80550391_80550460_80550932
transcript_84563.nic	chr7	-	1507	7	NIC	ENSMUSG00000025722.17	novel	2114	8	NA	NA	-18	2	combination_of_known_junctions	FALSE	canonical	3	13	junction_4	46.1173021278951	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGCAATTAGCAATTTACT	NA	False	NA	-5	True	AATAAA	-22	NA	80551035	80541006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80550095_80550185_80550391_80550460_80550932
transcript_84564.known	chr7	-	3142	7	FSM	ENSMUSG00000025722.17	ENSMUST00000152518.8	3142	7	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_6	17.3365381652611	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTTTGTGTGTATGAG	NA	False	NA	-4	True	AATAAA	-15	NA	80550980	80540471	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095_80550185_80550391_80550460_80550932
transcript_84565.known	chr7	-	785	6	FSM	ENSMUSG00000025722.17	ENSMUST00000133979.8	785	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	59.805016511995	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTGCTTGGCTATTTCAG	NA	False	NA	NA	False	NA	NA	NA	80550967	80542743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_80543090_80543396_80543562_80547670_80547736_80550095_80550202_80550391_80550460_80550932
transcript_84567.known	chr7	-	2549	7	FSM	ENSMUSG00000025722.17	ENSMUST00000139990.8	2549	7	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_4	7.94599829404014	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTTTGTGTGTATGAG	NA	False	NA	-4	True	AATAAA	-15	NA	80550980	80540471	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095_80550185_80550391
transcript_84577.known	chr7	-	678	3	FSM	ENSMUSG00000025723.13	ENSMUST00000119428.2	678	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	6	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGAATGTCTGGGCCTCT	NA	False	NA	NA	False	AATAAA	-15	NA	80554808	80551981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_80552247_80553881_80554055_80554568
transcript_84579.known	chr7	-	1345	6	FSM	ENSMUSG00000025724.13	ENSMUST00000026818.12	1345	6	0	0	0	0	multi-exon	FALSE	canonical	3	936	junction_3	43.4391528462515	3910	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTTTCCCTGAATTCTGT	1385	False	NA	-5	True	AATAAA	-18	NA	80597528	80565124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_80565653_80565922_80565981_80572848_80572969_80577484_80577635_80584774_80584885_80597149
transcript_8458.known	chr10	-	1178	2	FSM	ENSMUSG00000004934.15	ENSMUST00000129549.2	1178	2	0	0	0	0	multi-exon	FALSE	canonical	3	682	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	81003548	80998876	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81000025_81003518
transcript_84580.known	chr7	+	7297	10	FSM	ENSMUSG00000005621.12	ENSMUST00000107353.3	7297	10	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	16.7715220125451	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTCATGTTCTGAAGCCT	NA	False	NA	NA	False	NA	NA	NA	80643428	80694912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_80643511_80659181_80659288_80673018_80675258_80679196_80679376_80687097_80687275_80687552_80687713_80687811_80688100_80688300_80688414_80688877_80689014_80691095
transcript_84582.known	chr7	+	6369	14	FSM	ENSMUSG00000038763.13	ENSMUST00000107348.2	6369	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	8.19438399112971	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCACGGTGTGATGATTAT	NA	False	NA	22	True	AATAAA	-34	NA	80707347	80755360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_80707521_80713696_80713736_80717626_80717749_80726620_80726739_80727293_80728582_80741894_80743933_80744654_80744803_80745149_80745278_80745405_80745442_80748494_80748770_80749918_80750008_80750655_80750880_80753092_80753142_80753718
transcript_84583.known	chr7	+	2846	18	FSM	ENSMUSG00000025726.12	ENSMUST00000026820.11	2846	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	56.988677318925	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGTGTGTACAGTGTG	NA	False	NA	11	True	AATAAA	-20	NA	80764546	80820164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_80764626_80765270_80765383_80766232_80766322_80767348_80767441_80771794_80771979_80774615_80774758_80775908_80776023_80777459_80777538_80787909_80787991_80791711_80791793_80803147_80803274_80810712_80810844_80814018_80814188_80814273_80814472_80817713_80817796_80818711_80818811_80818914_80819027_80819287
transcript_84589.nic	chr7	+	2072	9	ISM	ENSMUSG00000025726.12	ENSMUST00000119083.2	2899	18	26917	0	26917	0	3prime_fragment	FALSE	canonical	3	108	junction_1	7.38135319572231	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGTGTGTACAGTGTG	9926	False	NA	11	True	AATAAA	-20	NA	80791514	80820164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_80791793_80803147_80803274_80810712_80810844_80814018_80814188_80814273_80814472_80817713_80817796_80818711_80818811_80818914_80819027_80819287
transcript_84598.nnic	chr7	+	1891	8	NIC	ENSMUSG00000025726.12	novel	2846	18	NA	NA	26972	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	42.0490481340493	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGTGTGTACAGTGTG	9981	False	NA	11	True	AATAAA	-20	NA	80791569	80820164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_80791793_80810712_80810844_80814018_80814188_80814273_80814472_80817713_80817796_80818711_80818811_80818914_80819027_80819287
transcript_84602.nic	chr7	+	1028	5	ISM	ENSMUSG00000025726.12	ENSMUST00000119083.2	2899	18	26917	5567	26917	-5567	internal_fragment	FALSE	canonical	3	108	junction_1	5.1478150704935	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAGAGTCATAACCTAATG	9926	False	NA	NA	False	TATAAA	-20	NA	80791514	80814597	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_80791793_80803147_80803274_80810712_80810844_80814018_80814188_80814273
transcript_84612.known	chr7	+	3802	22	FSM	ENSMUSG00000025584.18	ENSMUST00000026672.8	3802	22	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_8	20.0953509362663	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATTTGTTGCCATTTCTT	1107	False	NA	7	True	ATTAAA	-18	NA	80863343	80984281	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_80863837_80930925_80930983_80932570_80932762_80941984_80942042_80942879_80942935_80945425_80945515_80950387_80950467_80951902_80952041_80956442_80956532_80958552_80958605_80958686_80958730_80964857_80964936_80966709_80966781_80967033_80967196_80968815_80968865_80969070_80969207_80970399_80970599_80973763_80973982_80975998_80976129_80977775_80977944_80982617_80982748_80983163
transcript_84614.known	chr7	-	494	5	FSM	ENSMUSG00000061787.16	ENSMUST00000080813.5	494	5	0	0	0	0	multi-exon	FALSE	canonical	3	8882	junction_4	1855.19963548401	107032	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGTATTGTTCTTG	NA	False	NA	-10	True	AATAAA	-12	NA	80995002	80992480	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_80992598_80993482_80993549_80994058_80994165_80994604_80994757_80994949
transcript_84615.known	chr7	-	405	3	FSM	ENSMUSG00000061787.16	ENSMUST00000130487.8	405	3	0	0	0	0	multi-exon	FALSE	canonical	3	12924	junction_1	227	961	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTGTATTGTTCTTGC	NA	False	NA	-9	True	AATAAA	-13	NA	80994279	80992479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_80992598_80993482_80993549_80994058
transcript_84616.known	chr7	-	383	5	FSM	ENSMUSG00000061787.16	ENSMUST00000208054.2	383	5	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_3	5279.89450652189	1380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTGTCTGTATTGTTCT	NA	False	NA	-12	True	AATAAA	-10	NA	80994975	80992482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_80992598_80993482_80993549_80994058_80994165_80994686_80994757_80994949
transcript_84617.known	chr7	-	660	4	FSM	ENSMUSG00000061787.16	ENSMUST00000134425.8	660	4	0	0	0	0	multi-exon	FALSE	canonical	3	12924	junction_1	185.347121789241	2992	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAAGTTTGTCTGTATT	NA	False	NA	-17	True	AATAAA	-5	NA	80994982	80992487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_80992598_80993482_80993549_80994058_80994165_80994604
transcript_84623.known	chr7	-	3806	26	FSM	ENSMUSG00000062444.16	ENSMUST00000082090.15	3806	26	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_25	15.5434873821804	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGCTCACCTTTCCTTC	7640	False	NA	1	True	AATAAA	-17	NA	81143673	81110146	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_81110550_81110675_81110815_81112651_81112750_81112988_81113074_81113431_81113661_81113838_81113946_81114189_81114251_81114378_81114560_81114887_81115006_81115404_81115514_81115918_81116038_81117182_81117370_81121569_81121747_81122747_81122858_81123134_81123268_81123604_81123668_81126027_81126100_81126488_81126544_81126693_81126978_81127063_81127247_81127335_81127403_81127653_81127815_81134173_81134270_81134583_81134659_81134781_81134858_81143255
transcript_84631.known	chr7	-	522	6	FSM	ENSMUSG00000061877.14	ENSMUST00000073406.12	522	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.09544511501033	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTAGGATGTTGGAGGTT	3284	False	NA	NA	False	ATTAAA	-16	NA	81148029	81144022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_81144127_81144873_81145004_81145326_81145529_81145890_81145909_81146597_81146616_81147979
transcript_84635.known	chr7	-	640	6	FSM	ENSMUSG00000061877.14	ENSMUST00000144156.2	640	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	2.49799919935936	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTAGGATGTTGGAGGTT	3284	False	NA	NA	False	ATTAAA	-16	NA	81148029	81144022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_81144127_81144873_81145122_81145326_81145529_81145890_81145909_81146597_81146616_81147979
transcript_84636.known	chr7	-	567	5	FSM	ENSMUSG00000061877.14	ENSMUST00000207871.2	567	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	2.6809513236909	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAAAGAGGTTTCAGAAGG	3294	False	NA	NA	False	NA	NA	NA	81148019	81144067	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_81144127_81144873_81145122_81145326_81145529_81146597_81146616_81147979
transcript_84639.nic	chr7	+	888	5	NIC	ENSMUSG00000097277.8	novel	720	4	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_3	35.5457451743524	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTTTTTGGGTATTATG	NA	False	NA	8	True	AATAAA	-13	NA	81173261	81181246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_81173425_81178534_81178689_81178904_81179007_81179094_81179276_81180958
transcript_8464.known	chr10	+	3089	14	FSM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	0	0	0	0	multi-exon	TRUE	canonical	3	5618	junction_10	706.418033369635	53534	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	2181	False	NA	32	True	AATAAA	-20	NA	81012464	81018332	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
transcript_84644.known	chr7	+	725	4	FSM	ENSMUSG00000097277.8	ENSMUST00000180879.8	725	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	29.9777695412228	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCAAAATTTTTTGGGTAT	NA	False	NA	4	True	AATAAA	-9	NA	81173318	81181242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_81173425_81178534_81178689_81179094_81179276_81180958
transcript_84646.nic	chr7	+	808	4	NIC	ENSMUSG00000097277.8	novel	725	4	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	2	11	junction_1	41.2148840428633	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTTTTTGGGTATTATG	NA	False	NA	8	True	AATAAA	-13	NA	81173286	81181246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_81173472_81178534_81178689_81179094_81179276_81180958
transcript_8465.known	chr10	+	64	1	FSM	ENSMUSG00000064441.3	ENSMUST00000082507.3	64	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGGGCTTGTGGCTGGGC	4500	False	NA	NA	False	AAGAAA	-15	NA	81014783	81014847	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_81014800_81014800
transcript_84652.known	chr7	+	1391	3	FSM	ENSMUSG00000038646.14	ENSMUST00000118190.2	1391	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	414	994	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAACTTTACCTTTTAGT	NA	False	NA	NA	False	AATAAA	-19	NA	81413030	81419228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_81413113_81417274_81417472_81418116
transcript_84655.known	chr7	+	1452	3	FSM	ENSMUSG00000038646.14	ENSMUST00000042166.11	1452	3	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_1	195	5002	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTAGTTTTGACAGCCC	NA	False	NA	NA	False	AATAAA	-30	NA	81412672	81419239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_81412805_81417274_81417472_81418116
transcript_84656.known	chr7	-	3001	8	FSM	ENSMUSG00000025103.9	ENSMUST00000026093.9	3001	8	0	0	0	0	multi-exon	FALSE	canonical	3	689	junction_4	90.4076933695809	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATTTGTCACCTCTCTTT	NA	False	NA	-4	True	AATAAA	-18	NA	81479179	81441821	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_81443475_81443905_81444053_81446743_81446832_81450705_81450899_81455489_81455688_81465662_81465769_81467942_81468100_81478720
transcript_8466.known	chr10	+	436	3	FSM	ENSMUSG00000034949.19	ENSMUST00000144087.2	436	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGGTCCTGTGCCTACC	NA	False	NA	NA	False	NA	NA	NA	81068988	81073387	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_81069077_81069444_81069596_81073190
transcript_84663.nnic	chr7	-	809	5	NNC	ENSMUSG00000025102.15	novel	405	4	NA	NA	-34	1899	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	126.089254102005	567	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAAGCCTACAACAAAATG	NA	False	NA	NA	False	NA	NA	NA	81439260	81430030	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_81430319_81432778_81432887_81435824_81435953_81438197_81438325_81439102
transcript_8467.nic	chr10	+	838	2	ISM	ENSMUSG00000034949.19	ENSMUST00000144087.2	436	3	-2	3195	-2	-3195	5prime_fragment	TRUE	canonical	3	5	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAGAAAACGCTCCAGTC	NA	False	NA	NA	False	AATATA	-26	NA	81068986	81070192	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_81069077_81069444
transcript_84670.known	chr7	-	887	5	FSM	ENSMUSG00000025102.15	ENSMUST00000026092.9	887	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	120.296508677517	687	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTAGCAGTTTCGAGTGC	NA	False	NA	NA	False	AATAAA	-17	NA	81439226	81431929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_81432330_81432778_81432887_81435824_81435953_81438197_81438325_81439102
transcript_8468.known	chr10	+	1841	13	FSM	ENSMUSG00000004933.18	ENSMUST00000121205.8	1841	13	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	3.15788255358274	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAACTGTCTGATGCCTGTG	NA	False	NA	NA	False	CATAAA	-22	NA	81093138	81098815	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_81093409_81094313_81094374_81095007_81095122_81095216_81095333_81095420_81095641_81095922_81096017_81096741_81096808_81097276_81097377_81097464_81097550_81097628_81097703_81097794_81097991_81098281_81098369_81098456
transcript_84681.known	chr7	-	504	4	FSM	ENSMUSG00000025102.15	ENSMUST00000152620.2	504	4	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_3	92.1604880388312	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCTCTACAACTCCAGAGG	NA	False	NA	NA	False	NA	NA	NA	81439213	81432851	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_81432887_81435824_81435953_81438197_81438325_81438999
transcript_84682.known	chr7	-	556	4	FSM	ENSMUSG00000025103.9	ENSMUST00000208114.2	556	4	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_3	292.588827917647	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTGAGTGTCTTGAGTA	5254	False	NA	-3	True	CATAAA	-15	NA	81450241	81443262	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_81443475_81443905_81444053_81446743_81446832_81450132
transcript_84683.known	chr7	+	2226	10	FSM	ENSMUSG00000038623.10	ENSMUST00000041890.8	2226	10	0	0	0	0	multi-exon	TRUE	canonical	3	11	junction_7	3.33703498170693	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTTTATTAATTTTGAAG	NA	False	NA	NA	False	AATAAA	-25	NA	81508748	81533819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_81509289_81512897_81513002_81514994_81515093_81518388_81518493_81520444_81520528_81521116_81521239_81523479_81523585_81525471_81525565_81525722_81525843_81532962
transcript_84687.known	chr7	+	1066	10	FSM	ENSMUSG00000038623.10	ENSMUST00000119543.2	1066	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	6.07565471755214	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTTCTCTCTGACCTGTT	NA	False	NA	NA	False	AATAAA	-13	NA	81512434	81533167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_81512467_81512897_81513002_81514994_81515093_81518388_81518493_81520444_81520528_81521116_81521239_81523479_81523585_81525471_81525565_81525722_81525843_81532962
transcript_84694.known	chr7	-	5887	6	FSM	ENSMUSG00000025104.14	ENSMUST00000107305.8	5887	6	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	4.22374241638857	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTTGTGACTGTCAGAA	NA	False	NA	-2	True	AATAAA	-14	NA	81584221	81530998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_81535832_81543546_81543694_81549421_81549578_81550032_81550172_81555307_81555385_81583686
transcript_84695.nnic	chr7	-	1325	2	Intergenic	novelGene_115	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	29	junction_1	0	58	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTATCTGCATTAATCATA	NA	False	NA	NA	False	AATAAA	-27	NA	81814602	81761686	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr7_-_81762785_81814375
transcript_84696.nnic	chr7	-	418	2	Intergenic	novelGene_116	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	29	junction_1	0	50	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTGAAGGAGAGACAAAGCC	NA	False	NA	NA	False	NA	NA	NA	81814550	81762541	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr7_-_81762785_81814375
transcript_84703.known	chr7	+	1647	9	FSM	ENSMUSG00000030638.14	ENSMUST00000032874.14	1647	9	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_3	40.04040927613	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGTTATTTTCAATGTC	NA	False	NA	17	True	AATAAA	-24	NA	81824543	81956627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_81824768_81909339_81909409_81917487_81917561_81919980_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
transcript_84704.known	chr7	+	1486	9	FSM	ENSMUSG00000030638.14	ENSMUST00000177895.8	1486	9	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_3	89.2394951801051	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGTTATTTTCAATGTC	NA	False	NA	17	True	AATAAA	-24	NA	81824697	81956627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_81824768_81909339_81909409_81917487_81917561_81919987_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
transcript_84709.nnic	chr7	+	1797	9	NNC	ENSMUSG00000030638.14	novel	763	4	NA	NA	37414	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	107.755437797821	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGTTATTTTCAATGTC	2975	False	NA	17	True	AATAAA	-24	NA	81862395	81956627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_81862770_81909339_81909409_81917487_81917561_81919980_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
transcript_84710.nnic	chr7	+	1976	9	NNC	ENSMUSG00000030638.14	novel	763	4	NA	NA	37228	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	128.793196637089	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGTTATTTTCAATGTC	2789	False	NA	17	True	AATAAA	-24	NA	81862209	81956627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_81862770_81909339_81909409_81917487_81917561_81919987_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
transcript_84711.nnic	chr7	+	1751	9	NNC	ENSMUSG00000030638.14	novel	763	4	NA	NA	37417	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	110.561917041991	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGTTATTTTCAATGTC	2978	False	NA	17	True	AATAAA	-24	NA	81862398	81956627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_81862727_81909339_81909409_81917487_81917561_81919980_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
transcript_84719.nnic	chr7	+	1546	9	NNC	ENSMUSG00000030638.14	novel	763	4	NA	NA	-32574	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	114.317266849763	140	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGTTATTTTCAATGTC	NA	False	NA	17	True	AATAAA	-24	NA	81887519	81956627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_81887643_81909339_81909409_81917487_81917561_81919980_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
transcript_84722.nnic	chr7	+	1723	9	NNC	ENSMUSG00000030638.14	novel	763	4	NA	NA	-30955	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_1	100.011249367259	175	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGTTATTTTCAATGTC	NA	False	NA	17	True	AATAAA	-24	NA	81889138	81956627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_81889439_81909339_81909409_81917487_81917561_81919980_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
transcript_84723.nnic	chr7	+	1716	9	NNC	ENSMUSG00000030638.14	novel	763	4	NA	NA	-30955	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_1	122.938437337555	142	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGTTATTTTCAATGTC	NA	False	NA	17	True	AATAAA	-24	NA	81889138	81956627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_81889439_81909339_81909409_81917487_81917561_81919987_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
transcript_84733.known	chr7	-	430	2	FSM	ENSMUSG00000038570.16	ENSMUST00000126478.2	430	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	126	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCCTTTTGTACCTATCC	NA	False	NA	0	True	AATAAA	-27	NA	82297736	82295375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_82295669_82297599
transcript_84734.known	chr7	+	3608	20	FSM	ENSMUSG00000038563.15	ENSMUST00000179489.8	3608	20	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	25.8006420500325	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCGTTTGTTTAATTAAT	NA	False	NA	38	True	AATAAA	-43	NA	82297821	82427060	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_82297858_82298733_82298840_82301088_82301157_82307264_82307350_82320812_82320947_82322017_82322156_82323575_82323791_82330559_82330684_82332212_82332290_82332911_82333049_82333526_82333650_82335872_82335973_82341670_82341823_82342037_82342205_82347086_82347226_82399999_82400132_82402781_82402930_82411642_82412623_82421664_82421850_82426698
transcript_84735.known	chr7	+	3610	20	FSM	ENSMUSG00000038563.15	ENSMUST00000039881.4	3610	20	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	22.1664566531058	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCGTTTGTTTAATTAAT	NA	False	NA	38	True	AATAAA	-43	NA	82297848	82427060	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_82297887_82298733_82298840_82301088_82301157_82307264_82307350_82320812_82320947_82322017_82322156_82323575_82323791_82330559_82330684_82332212_82332290_82332911_82333049_82333526_82333650_82335872_82335973_82341670_82341823_82342037_82342205_82347086_82347226_82399999_82400132_82402781_82402930_82411642_82412623_82421664_82421850_82426698
transcript_84737.known	chr7	+	2453	15	FSM	ENSMUSG00000038563.15	ENSMUST00000125245.8	2453	15	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	27.9482028190781	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGCTACTGGTTTGCCTG	NA	False	NA	NA	False	AATAAA	-15	NA	82297836	82347892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_82297858_82298733_82298840_82301088_82301157_82307264_82307350_82320812_82320947_82322017_82322156_82323575_82323791_82330559_82330684_82332212_82332290_82332911_82333049_82333526_82333650_82335872_82335973_82341670_82341823_82342037_82342205_82347086
transcript_84745.nnic	chr7	+	1083	5	NNC	ENSMUSG00000038563.15	novel	755	7	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	64.6935081750866	71	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGTGGCCTGTGGCTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	82297793	82308234	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_82297858_82298733_82298840_82301088_82301157_82307264_82307350_82307474
transcript_84746.nnic	chr7	+	1108	5	NNC	ENSMUSG00000038563.15	novel	3610	20	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	60.1139542868376	103	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGTGGCCTGTGGCTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	82297797	82308234	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_82297887_82298733_82298840_82301088_82301157_82307264_82307350_82307474
transcript_84758.known	chr7	+	3621	19	FSM	ENSMUSG00000038540.15	ENSMUST00000163297.8	3621	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	2.78886675511359	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTCATTCTTATTTTCTA	NA	False	NA	NA	False	AATAAA	-37	NA	83234134	83267315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_83234389_83235493_83235641_83239847_83239924_83245268_83245351_83246654_83246762_83247407_83247507_83247607_83247751_83249155_83249304_83250093_83250138_83252535_83252684_83253938_83254049_83256941_83257021_83258283_83258533_83259051_83259181_83259919_83259988_83261641_83261771_83264120_83264232_83265065_83265189_83265940
transcript_84762.known	chr7	-	8508	2	FSM	ENSMUSG00000087088.3	ENSMUST00000208892.2	8508	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCACATGGGAAGAGATGG	NA	False	NA	NA	False	NA	NA	NA	83281088	83267689	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_83275083_83279973
transcript_84767.known	chr7	+	2483	6	FSM	ENSMUSG00000046027.18	ENSMUST00000075418.15	2483	6	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_5	19.4566184112245	590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTGAGTTCCTCATTTA	NA	False	NA	NA	False	ATTAAA	-23	NA	83281166	83291536	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_83281348_83281943_83281994_83282337_83282471_83285958_83286077_83286811_83286906_83289629
transcript_84769.nnic	chr7	+	1246	6	NNC	ENSMUSG00000046027.18	novel	2483	6	NA	NA	-12	-1212	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_5	71.3649774048868	57	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTTTGTGATCTCTTCCAT	NA	False	NA	37	True	TTTAAA	-39	NA	83281154	83290324	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_83281348_83281943_83281994_83282337_83282471_83285958_83286077_83286811_83286906_83289666
transcript_8477.known	chr10	-	604	3	FSM	ENSMUSG00000034932.5	ENSMUST00000046114.5	604	3	0	0	0	0	multi-exon	FALSE	canonical	3	958	junction_1	11.5	6850	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGTGTCATGCCCTGTG	3094	False	NA	0	True	AATAAA	-29	NA	81102768	81100546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81100832_81101484_81101642_81102606
transcript_84777.nnic	chr7	+	1925	2	Genic_Genomic	ENSMUSG00000063902.14	novel	1378	1	NA	NA	-84	522	multi-exon	FALSE	canonical	0	0	junction_1	0	562	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTTGGATTCACTAAAGA	NA	False	NA	24	True	AATAAA	-24	NA	83405027	83407011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr7_+_83406475_83406533
transcript_84779.known	chr7	-	1335	7	FSM	ENSMUSG00000011154.18	ENSMUST00000011298.14	1335	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.687184270936277	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGATGTTTCGACACTGTTG	NA	False	NA	NA	False	AATAAA	-16	NA	83444088	83424824	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_83425371_83426277_83426352_83429371_83429531_83440839_83440931_83442416_83442653_83443203_83443294_83443949
transcript_84784.known	chr7	+	489	4	FSM	ENSMUSG00000038503.16	ENSMUST00000130103.2	489	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	621.098131448557	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCGCCATCTTCATGCTCC	NA	False	NA	NA	False	NA	NA	NA	83541209	83546975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_83541276_83541511_83541684_83544737_83544971_83546957
transcript_84786.known	chr7	+	614	3	FSM	ENSMUSG00000038503.16	ENSMUST00000138803.8	614	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	656	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATCCCAAACCACGTGCT	NA	False	NA	NA	False	AATAAA	-32	NA	83533673	83547148	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_83533864_83544737_83544971_83546957
transcript_84787.known	chr7	+	4492	3	FSM	ENSMUSG00000038503.16	ENSMUST00000094215.10	4492	3	0	0	0	0	multi-exon	FALSE	canonical	3	1312	junction_2	6.5	3386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTTATTCTGTGCGTGT	NA	False	NA	NA	False	TTTAAA	-41	NA	83541207	83550740	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_83541684_83544737_83544971_83546957
transcript_84789.known	chr7	+	1109	3	FSM	ENSMUSG00000038503.16	ENSMUST00000153377.2	1109	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	654.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGCATAGCAGATGACATT	NA	False	NA	NA	False	NA	NA	NA	83541537	83547288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_83542083_83544737_83544971_83546957
transcript_8479.known	chr10	-	2901	21	FSM	ENSMUSG00000034917.9	ENSMUST00000219479.2	2901	21	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_20	30.1312130522487	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATTTTTTATATTA	6983	False	NA	-13	True	AATAAA	-6	NA	81127415	81109061	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81109224_81109482_81109530_81109636_81109904_81110216_81110318_81110413_81110625_81111007_81111079_81112101_81112198_81113029_81113245_81113652_81113900_81114457_81114567_81115028_81115186_81115338_81115406_81115727_81115790_81115916_81116026_81116239_81116400_81116599_81116704_81116938_81117267_81118771_81118875_81119329_81119440_81119516_81119574_81127297
transcript_84793.known	chr7	-	2238	3	FSM	ENSMUSG00000038459.11	ENSMUST00000117085.2	2238	3	0	0	0	0	multi-exon	FALSE	canonical	3	1379	junction_1	80.5	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCGTGGGCTTATGTGCTCC	NA	False	NA	-7	True	AATAAA	-18	NA	83801101	83758563	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_83760010_83763458_83763639_83800489
transcript_84799.known	chr7	-	1585	14	FSM	ENSMUSG00000030630.17	ENSMUST00000032865.17	1585	14	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_9	7.3524942432914	375	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGTTCTTGGTTTTAGC	NA	False	NA	-4	True	AATAAA	-32	NA	84255150	84234366	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_84234553_84238038_84238157_84238781_84238884_84241589_84241637_84242393_84242470_84243920_84244052_84244665_84244766_84246241_84246295_84246385_84246484_84248261_84248353_84249984_84250035_84250240_84250363_84251288_84251400_84254850
transcript_8481.nnic	chr10	+	1549	11	NNC	ENSMUSG00000004931.12	novel	2268	12	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	66.2483207334344	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTGGTCAGAAGCTTGA	1331	False	NA	18	True	TATAAA	-21	NA	81104016	81109070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_81104154_81105148_81105296_81105378_81105419_81106801_81106948_81107029_81107117_81107198_81107361_81107495_81107667_81108018_81108232_81108417_81108538_81108655_81108794_81108882
transcript_84811.known	chr7	-	1658	8	FSM	ENSMUSG00000030629.16	ENSMUST00000069537.3	1658	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_7	283.434475744953	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAGCTACGTTTCC	NA	False	NA	NA	False	AATAAA	-13	NA	84328559	84264261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84302089_84302251_84328517
transcript_84813.known	chr7	-	967	8	FSM	ENSMUSG00000030629.16	ENSMUST00000209165.2	967	8	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_6	270.713795702534	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAGATCCAGAAGATTTG	NA	False	NA	NA	False	AAGAAA	-18	NA	84339091	84265048	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84302089_84302251_84338953
transcript_84816.known	chr7	-	1538	7	FSM	ENSMUSG00000030629.16	ENSMUST00000178385.9	1538	7	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_6	230.002475832085	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAGCTACGTTTCC	NA	False	NA	NA	False	AATAAA	-13	NA	84328600	84264261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84328517
transcript_84817.known	chr7	-	2955	7	FSM	ENSMUSG00000030629.16	ENSMUST00000209117.2	2955	7	0	0	0	0	multi-exon	FALSE	canonical	3	577	junction_5	69.5045961709648	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAACAAAACAAAA	NA	False	NA	NA	False	AAGAAA	-41	NA	84339165	84262973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84338953
transcript_8482.nic	chr10	+	2000	11	NIC	ENSMUSG00000004931.12	novel	2268	12	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	59.7863696840676	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTGGTCAGAAGCTTGA	1337	False	NA	18	True	TATAAA	-21	NA	81104022	81109070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_+_81104154_81104691_81105296_81105378_81105419_81106801_81106948_81107029_81107117_81107198_81107361_81107495_81107667_81108018_81108232_81108417_81108538_81108655_81108794_81108882
transcript_84827.known	chr7	+	3753	18	FSM	ENSMUSG00000030562.18	ENSMUST00000032781.14	3753	18	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	3.12706679058871	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTCTGTGGAATTTCTA	NA	False	NA	NA	False	AATAAA	-15	NA	86895856	87047918	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_86896111_86896695_86896792_86944991_86945103_86946662_86946748_86954045_86954144_86955936_86955965_86963271_86963345_86966438_86966520_86970753_86970971_86972840_86973006_86973140_86973204_86988164_86988226_87009935_87010018_87019225_87019346_87021126_87021236_87023561_87023631_87025389_87025491_87045978
transcript_84829.known	chr7	+	1159	3	FSM	ENSMUSG00000030562.18	ENSMUST00000124269.8	1159	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	6	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAGAAAAGAAGTAAAGAGCC	NA	False	NA	NA	False	NA	NA	NA	86895856	86937189	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_86896111_86896695_86896792_86936380
transcript_84830.known	chr7	+	2493	7	FSM	ENSMUSG00000030560.18	ENSMUST00000032779.12	2493	7	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_5	18.6100331362771	674	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCTTGTTGTGTGTCTTT	NA	False	NA	NA	False	AATAAA	-34	NA	87927292	87960096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_87927583_87930594_87930741_87946290_87946458_87948652_87948806_87951392_87951509_87957220_87957353_87958607
transcript_84831.known	chr7	+	3220	4	FSM	ENSMUSG00000030560.18	ENSMUST00000131108.9	3220	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	178.66417908716	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCACTGTGGCATTGTTTT	NA	False	NA	NA	False	AATAAA	-31	NA	87927341	87940605	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_87927583_87930594_87930741_87936101_87936187_87937857
transcript_84832.known	chr7	+	1577	3	FSM	ENSMUSG00000030559.9	ENSMUST00000107256.4	1577	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	4.5	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTAAGGTATTGGGATGT	NA	False	NA	NA	False	NA	NA	NA	88079480	88140780	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_88079812_88099688_88099970_88139815
transcript_84834.known	chr7	-	453	1	FSM	ENSMUSG00000069972.7	ENSMUST00000182017.2	453	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25866	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGCTGTTGTGTGCACA	NA	False	NA	NA	False	NA	NA	NA	88180106	88179653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_88179700_88180100
transcript_84835.known	chr7	-	473	1	FSM	ENSMUSG00000109135.2	ENSMUST00000208014.2	473	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAGGGGACTCTGGCCAAC	NA	False	NA	NA	False	NA	NA	NA	88431606	88431133	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_88431100_88431600
transcript_84836.known	chr7	-	3700	15	FSM	ENSMUSG00000039428.12	ENSMUST00000041968.11	3700	15	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_2	15.7941154115276	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGGGTTTTATTTCCAT	NA	False	NA	NA	False	AATAAA	-24	NA	88987995	88788921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_88791179_88792988_88793057_88793864_88793964_88797177_88797255_88800620_88800685_88803235_88803404_88805634_88805705_88808076_88808224_88814332_88814375_88845320_88845368_88893128_88893195_88929174_88929209_88953888_88953982_88956344_88956473_88987655
transcript_8484.known	chr10	+	2106	11	FSM	ENSMUSG00000004931.12	ENSMUST00000057798.9	2106	11	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_1	25.7441255435099	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGCTTGAGGGCTTGTGG	1320	False	NA	28	True	TATAAA	-31	NA	81104005	81109080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_81104154_81104612_81105296_81105378_81105419_81106801_81106948_81107029_81107117_81107198_81107361_81107495_81107667_81108018_81108232_81108417_81108538_81108655_81108794_81108882
transcript_84841.nic	chr7	+	629	4	ISM	ENSMUSG00000030621.18	ENSMUST00000032853.9	1130	9	19340	0	19340	0	3prime_fragment	FALSE	canonical	0	0	junction_3	0.816496580927726	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTTGTCTCTGTGGTTAT	NA	False	NA	NA	False	TATAAA	-18	NA	89497829	89501170	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_89497959_89498801_89498976_89499540_89499640_89500943
transcript_8485.nic	chr10	+	2044	11	NIC	ENSMUSG00000004931.12	novel	2268	12	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_5	64.5607465880004	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTGGTCAGAAGCTTGA	1345	False	NA	18	True	TATAAA	-21	NA	81104030	81109070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_+_81104154_81104612_81105296_81105378_81105419_81106801_81106948_81107029_81107117_81107225_81107361_81107495_81107667_81108018_81108232_81108417_81108538_81108655_81108794_81108882
transcript_84871.known	chr7	-	2539	1	FSM	ENSMUSG00000062797.15	ENSMUST00000207695.2	2539	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTTTGCCTTATGGTTA	NA	False	NA	NA	False	AATAAA	-15	NA	89590371	89587832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_89587800_89590400
transcript_84872.known	chr7	-	806	4	FSM	ENSMUSG00000062797.15	ENSMUST00000208357.2	806	4	0	0	0	0	multi-exon	FALSE	canonical	3	430	junction_3	356.664485974642	4288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTATTTGAAATACCATTAC	NA	False	NA	-2	True	AATAAA	-17	NA	89590407	89567911	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89590176
transcript_84873.known	chr7	-	2224	5	FSM	ENSMUSG00000062797.15	ENSMUST00000153470.9	2224	5	0	0	0	0	multi-exon	FALSE	canonical	3	695	junction_3	227.142026054185	3032	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGTACCTTGACAGTGG	NA	False	NA	-14	True	AATAAA	-17	NA	89590412	89566736	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89584934_89585173_89590176
transcript_84874.known	chr7	-	835	4	FSM	ENSMUSG00000062797.15	ENSMUST00000207309.2	835	4	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	457.818741425032	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATGTGTAACCTTTTCG	NA	False	NA	14	True	AATAAA	-33	NA	89590334	89567895	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_89568216_89569280_89569400_89584934_89585173_89590176
transcript_84875.known	chr7	-	1053	6	FSM	ENSMUSG00000062797.15	ENSMUST00000078918.10	1053	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	509.123403508422	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATTTGAAATACCATTACA	NA	False	NA	-1	True	AATAAA	-18	NA	89590274	89567910	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89579527_89579669_89584934_89585173_89590176
transcript_84891.known	chr7	+	1100	1	FSM	ENSMUSG00000097585.3	ENSMUST00000181784.2	1100	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAAATAAAAAT	NA	False	NA	NA	False	NA	NA	NA	89629956	89631056	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_89630000_89631100
transcript_84892.known	chr7	-	767	5	FSM	ENSMUSG00000030619.11	ENSMUST00000207980.2	767	5	0	0	0	0	multi-exon	FALSE	canonical	3	461	junction_2	814.365090116221	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTTAACTCTAGAAAGCT	NA	False	NA	-8	True	AATAAA	-27	NA	89614049	89603867	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_89604272_89604738_89604813_89605551_89605622_89611463_89611570_89613936
transcript_84893.known	chr7	-	432	3	FSM	ENSMUSG00000097162.3	ENSMUST00000209164.2	432	3	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	1.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTCAAACCGCTATCTAA	NA	False	NA	-13	True	AATAAA	-17	NA	89779192	89774038	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_89774241_89776135_89776253_89779079
transcript_84894.known	chr7	-	271	2	FSM	ENSMUSG00000097162.3	ENSMUST00000209166.2	271	2	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	0	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTCAAACCGCTATCTAA	NA	False	NA	-13	True	AATAAA	-17	NA	89779148	89774038	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_89774241_89779079
transcript_84897.known	chr7	+	3361	20	FSM	ENSMUSG00000039361.12	ENSMUST00000208742.2	3361	20	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_12	48.3518384036048	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTTACGGTGTTCTGGTT	NA	False	NA	17	True	AATAAA	-18	NA	89779711	89858138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_89779911_89809655_89809799_89810467_89810544_89814721_89814825_89818389_89818484_89819786_89819899_89821441_89821549_89822241_89822284_89823655_89823742_89825486_89825611_89825866_89826004_89826707_89826812_89831426_89831577_89838357_89838466_89840348_89840481_89840566_89840598_89840861_89840962_89844862_89844923_89846123_89846229_89856790
transcript_84898.known	chr7	+	873	4	FSM	ENSMUSG00000051451.7	ENSMUST00000207252.2	873	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	30.3424894606007	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTAGTGTCTTAAAATAGA	NA	False	NA	NA	False	AATAAA	-15	NA	90093094	90096929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_90093296_90093507_90093586_90094632_90094702_90096404
transcript_84899.known	chr7	+	891	3	FSM	ENSMUSG00000051451.7	ENSMUST00000107206.3	891	3	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	21.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGTAGGATACAAGCCCCA	NA	False	NA	NA	False	NA	NA	NA	90092876	90095026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_90093296_90093507_90093586_90094632
transcript_84900.known	chr7	+	789	3	FSM	ENSMUSG00000051451.7	ENSMUST00000209102.2	789	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	37	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTAGTGTCTTAAAATAGA	NA	False	NA	NA	False	AATAAA	-15	NA	90093390	90096929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_90093586_90094632_90094702_90096404
transcript_84901.known	chr7	+	1380	2	FSM	ENSMUSG00000051451.7	ENSMUST00000143408.3	1380	2	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTATGGGCTCAAAGAATTT	NA	False	NA	NA	False	AATAAA	-22	NA	90092885	90095312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_90093586_90094632
transcript_84908.known	chr7	-	799	5	FSM	ENSMUSG00000030615.13	ENSMUST00000032844.7	799	5	0	0	0	0	multi-exon	FALSE	canonical	3	739	junction_4	32.5297940356222	5246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGCAACATTAAAATACTT	1645	False	NA	NA	False	AATAAA	-19	NA	90106437	90099907	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_90100144_90100750_90100866_90101914_90102109_90104631_90104728_90106279
transcript_84909.known	chr7	-	466	4	FSM	ENSMUSG00000030615.13	ENSMUST00000207159.2	466	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	346.691345275432	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAATCTTGTCTGCAAC	1772	False	NA	NA	False	AATAAA	-7	NA	90106310	90099919	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_90100144_90100750_90100866_90104631_90104728_90106279
transcript_84910.known	chr7	-	756	5	FSM	ENSMUSG00000030615.13	ENSMUST00000136652.8	756	5	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_2	308.308591349641	651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGCAACATTAAAATACTT	1666	False	NA	NA	False	AATAAA	-19	NA	90106416	90099907	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_90100144_90100750_90100866_90101936_90102109_90104631_90104728_90106279
transcript_84912.known	chr7	-	2259	5	FSM	ENSMUSG00000030614.9	ENSMUST00000032843.9	2259	5	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_1	24.1389208540896	537	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATGCATGGAGGTCCCTG	6020	False	NA	NA	False	NA	NA	NA	90125209	90116645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_90118370_90118777_90118890_90119972_90120167_90121805_90121928_90125102
transcript_84916.known	chr7	+	692	2	FSM	ENSMUSG00000030613.14	ENSMUST00000153776.2	692	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGTATCTTTAGACCAGCT	NA	False	NA	NA	False	AAAACA	-42	NA	92210356	92213928	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_92210844_92213723
transcript_84917.known	chr7	+	1596	9	FSM	ENSMUSG00000030613.14	ENSMUST00000032842.13	1596	9	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_4	17.8658193207029	1311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCATTGTAAATGTGTTAT	NA	False	NA	10	True	AATAAA	-18	NA	92210356	92231502	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_92210844_92216829_92216950_92217679_92217784_92221746_92221849_92223829_92223872_92223951_92224024_92224536_92224591_92227631_92227747_92231002
transcript_84919.known	chr7	-	5995	16	FSM	ENSMUSG00000041328.17	ENSMUST00000119954.9	5995	16	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_15	55.0229850961295	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGAAGGCTTTTTTCATG	NA	False	NA	NA	False	ATTAAA	-25	NA	92319142	92292750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_92293986_92295197_92295234_92295637_92295731_92296135_92296292_92297149_92297334_92298133_92298240_92298663_92298784_92302357_92302458_92306515_92308075_92309005_92309097_92309207_92309389_92310166_92311285_92312669_92312865_92313174_92313364_92314947_92315074_92318636
transcript_84920.nic	chr7	-	2442	9	ISM	ENSMUSG00000041328.17	ENSMUST00000151177.2	4731	13	5101	0	5101	0	3prime_fragment	FALSE	canonical	3	164	junction_7	31.850971335267	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATCCATGGAGTGTAATAT	NA	False	NA	-6	True	NA	NA	NA	92307644	92293467	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_92293986_92295197_92295234_92295637_92295731_92296135_92296292_92297149_92297334_92298133_92298240_92298663_92298784_92302357_92302458_92306515
transcript_84921.known	chr7	-	669	2	FSM	ENSMUSG00000074024.6	ENSMUST00000182408.2	669	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATAACTGTGGAAAACTTC	NA	False	NA	NA	False	AATGAA	-31	NA	92390667	92389913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_92390185_92390269
transcript_84922.known	chr7	-	3832	1	FSM	ENSMUSG00000074024.6	ENSMUST00000182578.2	3832	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	73	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGACATAAGCAGGGTATTTA	NA	False	NA	NA	False	AAAAAG	-15	NA	92390676	92386844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_92386800_92390700
transcript_84924.known	chr7	+	9456	5	FSM	ENSMUSG00000030643.15	ENSMUST00000032879.15	9456	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	4.32290411644765	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGGAGGATTATATACCAT	NA	False	NA	NA	False	AATAAA	-19	NA	92390810	92493743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_92391051_92469190_92469292_92473005_92473090_92478733_92478918_92484896
transcript_84928.known	chr7	-	840	7	FSM	ENSMUSG00000030641.11	ENSMUST00000208356.2	840	7	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_4	58.4648517392193	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGAAACCTCACTGTGGCT	NA	False	NA	NA	False	NA	NA	NA	92523445	92509356	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_92509521_92510607_92510726_92511532_92511695_92515778_92515908_92517319_92517407_92521969_92522053_92523348
transcript_84930.known	chr7	-	3387	6	FSM	ENSMUSG00000030641.11	ENSMUST00000032877.11	3387	6	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_4	35.6168499449348	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTTTTTGTTATAATTT	NA	False	NA	-1	True	AGTAAA	-18	NA	92523455	92506732	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_92509521_92510607_92510726_92511532_92511695_92515778_92515908_92521969_92522053_92523348
transcript_84932.known	chr7	+	2245	9	FSM	ENSMUSG00000061119.8	ENSMUST00000207594.2	2245	9	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_5	35.423994339995	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTATTGAAAAAGTAGAATG	NA	False	NA	102	True	AATAAA	-24	NA	92524507	92583222	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_92524709_92550366_92550508_92554318_92554421_92559342_92559525_92566876_92566930_92568209_92568380_92576887_92577053_92577812_92578001_92582179
transcript_84933.known	chr7	+	2967	9	FSM	ENSMUSG00000061119.8	ENSMUST00000076052.8	2967	9	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_2	10.1665812837945	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCATTTATATTAATTTATA	NA	False	NA	NA	False	NA	NA	NA	92524459	92583791	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_92524709_92550366_92550508_92554318_92554421_92559342_92559525_92566876_92567035_92568209_92568380_92576887_92577053_92577812_92578001_92582179
transcript_84937.known	chr7	+	687	4	FSM	ENSMUSG00000061119.8	ENSMUST00000207992.2	687	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	46.0506967012082	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACCTAATGTCTTCTATCT	NA	False	NA	NA	False	AATAAA	-24	NA	92524502	92555794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_92524709_92550366_92550508_92554318_92554421_92555556
transcript_84939.known	chr7	+	790	2	FSM	ENSMUSG00000061119.8	ENSMUST00000208103.2	790	2	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATGAAAAATAAAATAAAAG	NA	False	NA	NA	False	CATAAA	-4	NA	92524507	92550955	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_92524709_92550366
transcript_84940.known	chr7	+	2093	1	FSM	ENSMUSG00000061119.8	ENSMUST00000208686.2	2093	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAAAGAAAGGAAGAA	NA	False	NA	NA	False	NA	NA	NA	92523677	92525770	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_92523700_92525800
transcript_84941.known	chr7	+	694	1	FSM	ENSMUSG00000109268.2	ENSMUST00000208883.2	694	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAATAAAAATAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	92551386	92552080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_92551400_92552100
transcript_84944.nnic	chr7	-	644	2	NNC	ENSMUSG00000087412.5	novel	849	2	NA	NA	-25	21	at_least_one_novel_splicesite	FALSE	canonical	3	464	junction_1	0	2554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTTTACTGGCCTTTTAA	NA	False	NA	-1	True	AATAAA	-36	NA	92828877	92828168	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_92828742_92828806
transcript_84945.nnic	chr7	-	655	2	NNC	ENSMUSG00000087412.5	novel	849	2	NA	NA	-24	20	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	0	2236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTTTACTGGCCTTTTA	NA	False	NA	-2	True	AATAAA	-35	NA	92828876	92828169	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_92828469_92828520
transcript_84946.known	chr7	-	625	1	FSM	ENSMUSG00000087412.5	ENSMUST00000140687.2	625	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	330	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCCTCATGTGTAGTGTAA	NA	False	NA	-60	True	NA	NA	NA	92828852	92828227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_92828200_92828900
transcript_84947.nic	chr7	+	692	5	NIC	ENSMUSG00000048078.17	novel	704	5	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	8.16624148553054	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGACCCATTAGCCTACA	NA	False	NA	NA	False	NA	NA	NA	95859363	96148124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_95859617_96004562_96004619_96085966_96086066_96145450_96145548_96147937
transcript_84952.nnic	chr7	+	384	3	NNC	ENSMUSG00000048078.17	novel	11021	33	NA	NA	-28049	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGACCCATTAGCCTACA	NA	False	NA	NA	False	NA	NA	NA	96143555	96148124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_96143656_96145450_96145548_96147937
transcript_84958.known	chr7	+	3778	14	FSM	ENSMUSG00000018995.13	ENSMUST00000044466.12	3778	14	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_6	11.3976017408833	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATACTGTTTGCGCTTCTT	7342	False	NA	NA	False	ATTAAA	-23	NA	96600711	96713965	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_96601152_96605150_96605261_96607281_96607403_96608877_96609019_96622688_96622770_96652004_96652100_96672824_96672958_96680544_96680644_96680752_96680791_96684437_96684505_96689105_96689244_96706654_96706753_96708992_96709020_96711775
transcript_84960.nic	chr7	+	2191	14	NIC	ENSMUSG00000018995.13	novel	3778	14	NA	NA	16	520	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	27.7429024987159	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTATGAAAGAAGTTATTTT	7374	False	NA	6	True	ATTAAA	-18	NA	96600743	96712699	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_96600863_96605150_96605261_96607281_96607403_96608877_96609019_96622688_96622770_96652004_96652100_96672824_96672958_96680544_96680644_96680752_96680791_96684437_96684505_96689105_96689244_96706654_96706753_96708992_96709020_96711775
transcript_84961.nic	chr7	+	1760	13	ISM	ENSMUSG00000018995.13	ENSMUST00000044466.12	3778	14	-34	4808	-34	-2992	5prime_fragment	FALSE	canonical	3	94	junction_6	11.8611761642765	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACTGCTTCTGATGTATC	7308	False	NA	NA	False	AGTAAA	-19	NA	96600677	96709157	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_96601152_96605150_96605261_96607281_96607403_96608877_96609019_96622688_96622770_96652004_96652100_96672824_96672958_96680544_96680644_96680752_96680791_96684437_96684505_96689105_96689244_96706654_96706753_96708992
transcript_84968.nnic	chr7	+	1811	6	NNC	ENSMUSG00000018995.13	novel	1777	12	NA	NA	-34	-15924	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	47.6294026836365	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGCGTGTGTCTGTGTGTC	7308	False	NA	NA	False	AATAAA	-33	NA	96600677	96636098	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_96601152_96605150_96605261_96607281_96607403_96608877_96609019_96622688_96622770_96635214
transcript_84970.known	chr7	+	2966	2	FSM	ENSMUSG00000044952.6	ENSMUST00000054107.6	2966	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTTTGTGTCTGCTTCCA	NA	False	NA	NA	False	GATAAA	-7	NA	96981533	96999420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_96981579_96996499
transcript_84976.known	chr7	+	2039	13	FSM	ENSMUSG00000035704.18	ENSMUST00000098300.6	2039	13	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_8	19.8289560996034	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCACATTCACTTTCCT	NA	False	NA	63	True	NA	NA	NA	97020812	97041392	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_97020940_97022875_97022955_97027307_97027502_97029014_97029125_97029447_97029516_97031780_97031908_97032125_97032230_97032892_97033014_97036008_97036149_97037655_97037796_97039448_97039547_97040095_97040169_97040734
transcript_84991.nnic	chr7	+	1689	10	NIC	ENSMUSG00000035704.18	novel	2039	13	NA	NA	-22	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	41.2017019904953	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCACATTCACTTTCCT	NA	False	NA	63	True	NA	NA	NA	97020790	97041392	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_97020940_97022875_97022955_97031780_97031908_97032125_97032230_97032892_97033014_97036008_97036149_97037655_97037796_97039448_97039547_97040095_97040169_97040734
transcript_84993.nic	chr7	+	1020	8	ISM	ENSMUSG00000035704.18	ENSMUST00000098300.6	2039	13	-22	8311	-22	-7775	5prime_fragment	TRUE	canonical	3	115	junction_7	14.6175739911846	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGCCCGTGTTTTGTGC	NA	False	NA	NA	False	NA	NA	NA	97020790	97033081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_97020940_97022875_97022955_97027307_97027502_97029014_97029125_97029447_97029516_97031780_97031908_97032125_97032230_97032892
transcript_84995.nic	chr7	+	1834	8	ISM	ENSMUSG00000035704.18	ENSMUST00000098300.6	2039	13	-22	7497	-22	-6961	5prime_fragment	FALSE	canonical	3	115	junction_7	14.6175739911846	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGAGTTTGGTTCCAGAAT	NA	False	NA	NA	False	NA	NA	NA	97020790	97033895	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_97020940_97022875_97022955_97027307_97027502_97029014_97029125_97029447_97029516_97031780_97031908_97032125_97032230_97032892
transcript_84998.nic	chr7	+	874	2	ISM	ENSMUSG00000035704.18	ENSMUST00000098300.6	2039	13	-22	17792	-22	-17256	5prime_fragment	FALSE	canonical	3	132	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAACTTCTCTTACCTCC	NA	False	NA	NA	False	NA	NA	NA	97020790	97023600	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_97020940_97022875
transcript_8500.nic	chr10	-	677	4	ISM	ENSMUSG00000034917.9	ENSMUST00000218484.2	685	5	-77	1590	-65	0	5prime_fragment	FALSE	canonical	0	0	junction_3	61.0810026840497	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTCAGTGCTTGTTTTTT	7775	False	NA	NA	False	NA	NA	NA	81121680	81118610	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_81118875_81119329_81119440_81119516_81119574_81121434
transcript_85004.known	chr7	+	683	3	FSM	ENSMUSG00000030647.9	ENSMUST00000032882.9	683	3	0	0	0	0	multi-exon	FALSE	canonical	3	2164	junction_2	233	24638	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCCTTTCCTGGTTCTGC	NA	False	NA	21	True	ATTAAA	-20	NA	97049209	97057009	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_97049565_97056072_97056217_97056825
transcript_85005.known	chr7	+	470	2	FSM	ENSMUSG00000030647.9	ENSMUST00000149122.2	470	2	0	0	0	0	multi-exon	FALSE	canonical	3	2630	junction_1	0	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTACTGGCTGCTTGCGTGGC	NA	False	NA	NA	False	NA	NA	NA	97049309	97056287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_97049565_97056072
transcript_85006.known	chr7	-	1277	2	FSM	ENSMUSG00000035686.9	ENSMUST00000043077.8	1277	2	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	0	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGCATGTTGGTCTTTTA	NA	False	NA	-6	True	ATTAAA	-15	NA	97066937	97062144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_97062723_97066238
transcript_85007.known	chr7	+	2203	2	FSM	ENSMUSG00000051727.15	ENSMUST00000206279.2	2203	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTGTTCGTGGTGGTCTG	803	False	NA	NA	False	AATAAA	-16	NA	97102428	97108762	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_97102670_97106800
transcript_85010.known	chr7	+	3240	23	FSM	ENSMUSG00000025133.10	ENSMUST00000026126.10	3240	23	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_9	43.027187253819	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGCTGTTCTAGTTTCTG	933	False	NA	25	True	AATAAA	-13	NA	97130162	97190601	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179638_97179958_97180019_97183577_97183738_97184347_97184492_97187106_97187228_97190218
transcript_85017.known	chr7	+	2179	12	FSM	ENSMUSG00000025133.10	ENSMUST00000206644.2	2179	12	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_9	35.9850749594149	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACTTTTTGGGTTTTTTG	980	False	NA	NA	False	AGTAAA	-10	NA	97130209	97163444	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733
transcript_85019.known	chr7	+	885	5	FSM	ENSMUSG00000025133.10	ENSMUST00000205481.2	885	5	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_4	26.0708170182678	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACTCAGTATTGACATTT	990	False	NA	NA	False	NA	NA	NA	97130219	97145190	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863
transcript_8502.known	chr10	-	3024	21	FSM	ENSMUSG00000034917.9	ENSMUST00000045744.7	3024	21	0	0	0	0	multi-exon	TRUE	canonical	3	41	junction_20	26.4920271025077	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAATACAAGACTGAGG	7297	False	NA	8	True	AATAAA	-27	NA	81127101	81109040	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81109224_81109482_81109530_81109636_81109904_81110216_81110318_81110413_81110625_81111007_81111079_81112101_81112198_81113029_81113245_81113652_81113900_81114457_81114567_81115028_81115186_81115338_81115406_81115727_81115790_81115916_81116026_81116239_81116400_81116599_81116704_81116938_81117267_81118771_81118875_81119329_81119440_81119516_81119574_81126881
transcript_85020.nnic	chr7	+	586	3	NNC	ENSMUSG00000025133.10	novel	3095	2	NA	NA	516	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	265.5	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCTGTTCTAGTTTCTGG	7774	False	NA	26	True	AATAAA	-14	NA	97185032	97190602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_97185114_97187106_97187228_97190218
transcript_85022.known	chr7	-	709	6	FSM	ENSMUSG00000035642.17	ENSMUST00000154779.8	709	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	45.2566017283667	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCCACATCAGCCTCCAC	NA	False	NA	-7	True	AATAAA	-31	NA	97228649	97199754	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_97199949_97207337_97207434_97214357_97214508_97218893_97218982_97224794_97224899_97228572
transcript_85028.known	chr7	-	883	5	FSM	ENSMUSG00000035642.17	ENSMUST00000154853.8	883	5	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_3	23.5902522241709	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAAGTTGAGAGCATTAG	NA	False	NA	NA	False	AATAAA	-22	NA	97228703	97199546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_97199949_97207337_97207434_97214357_97214508_97224794_97224899_97228572
transcript_8503.known	chr10	-	599	4	FSM	ENSMUSG00000034917.9	ENSMUST00000219958.2	599	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_3	41.7692071587032	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTCAGTGCTTGTTTTTT	7349	False	NA	NA	False	NA	NA	NA	81127049	81118610	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81118875_81119329_81119440_81119516_81119574_81126881
transcript_85035.known	chr7	-	776	4	FSM	ENSMUSG00000035642.17	ENSMUST00000072725.12	776	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	25.8069758011279	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGAGAGCATTAGCGATCT	NA	False	NA	NA	False	AATAAA	-28	NA	97228686	97199540	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_97199949_97214357_97214508_97224794_97224899_97228572
transcript_85036.known	chr7	-	642	4	FSM	ENSMUSG00000035642.17	ENSMUST00000146605.8	642	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	47.8910801251711	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGGCTGTCTTACCAGTC	NA	False	NA	-24	True	AATAAA	-14	NA	97228681	97199771	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_97199949_97207337_97207434_97214357_97214508_97228462
transcript_85037.known	chr7	-	789	4	FSM	ENSMUSG00000035642.17	ENSMUST00000136757.8	789	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	30.4740326617051	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGCATTAGCGATCTCAC	NA	False	NA	NA	False	AATAAA	-31	NA	97228704	97199537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_97199949_97207337_97207434_97214357_97214508_97228572
transcript_8504.known	chr10	+	2715	9	FSM	ENSMUSG00000034889.9	ENSMUST00000050867.8	2715	9	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_2	15.2786615905975	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTTCTGATCTGAGTCA	5469	False	NA	16	True	AATAGA	-15	NA	81156936	81162076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_81157281_81158271_81158840_81158954_81159101_81159452_81159616_81159743_81159859_81160136_81160330_81160702_81160823_81160923_81161211_81161297
transcript_85048.known	chr7	-	467	3	FSM	ENSMUSG00000035642.17	ENSMUST00000138060.3	467	3	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	14	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCAGCCTCCACTGTGTA	NA	False	NA	-1	True	AATAAA	-37	NA	97228689	97199748	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_97199949_97214357_97214508_97228572
transcript_85049.known	chr7	-	618	3	FSM	ENSMUSG00000035642.17	ENSMUST00000124552.3	618	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	49.5	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGAAGGCCAAAGAGAAAGT	NA	False	NA	NA	False	AATAAA	-10	NA	97228704	97199558	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_97199949_97207337_97207434_97228572
transcript_8505.known	chr10	+	1765	3	FSM	ENSMUSG00000034881.9	ENSMUST00000105325.4	1765	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.5	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCTGGAGCACTCCCCTA	3846	False	NA	NA	False	AATAAA	-15	NA	81164564	81171006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_81164752_81168225_81169090_81170292
transcript_85051.known	chr7	-	380	3	FSM	ENSMUSG00000035642.17	ENSMUST00000144858.8	380	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	34	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCAGCCTCCACTGTGTA	NA	False	NA	-1	True	AATAAA	-37	NA	97228648	97199748	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_97199949_97224794_97224899_97228572
transcript_85053.known	chr7	-	516	2	FSM	ENSMUSG00000035642.17	ENSMUST00000140805.2	516	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGCCAAAGAGAAAGTTGAGA	NA	False	NA	NA	False	AATAAA	-15	NA	97228693	97199553	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_97199949_97228572
transcript_85055.known	chr7	+	11124	16	FSM	ENSMUSG00000035623.15	ENSMUST00000107153.3	11124	16	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_2	14.120749114532	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACTTAGCATTGTGTTTG	NA	False	NA	NA	False	AATAAA	-18	NA	97229103	97341985	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_97229313_97266049_97266142_97285583_97285677_97288511_97288718_97302259_97302415_97310019_97311789_97313766_97313974_97318975_97319081_97320009_97320090_97323787_97323843_97325362_97325473_97326551_97326620_97328141_97328350_97329825_97330050_97330905_97331095_97334631
transcript_85057.nic	chr7	+	927	5	ISM	ENSMUSG00000035623.15	ENSMUST00000156060.8	5695	15	-31	33072	-23	-7566	5prime_fragment	FALSE	canonical	3	100	junction_2	11.247221879202	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGCAAAAAAATGCTTGTT	NA	False	NA	NA	False	TATAAA	-22	NA	97229072	97302555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_97229313_97266049_97266142_97285583_97285677_97288511_97288718_97302259
transcript_85065.known	chr7	-	3091	2	FSM	ENSMUSG00000086993.2	ENSMUST00000147690.2	3091	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAAAAACAAGAA	NA	False	NA	NA	False	NA	NA	NA	97345828	97342629	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_97345675_97345782
transcript_85066.known	chr7	+	1504	7	FSM	ENSMUSG00000025439.6	ENSMUST00000026506.5	1504	7	0	0	0	0	multi-exon	FALSE	canonical	3	1088	junction_4	64.1950153828161	4548	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCGCTGTGATTTTGCTCT	NA	False	NA	11	True	AATAAA	-17	NA	97345840	97368086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_97346077_97354795_97354933_97360906_97361006_97361833_97361942_97363113_97363288_97365657_97365747_97367425
transcript_85067.known	chr7	-	3737	3	FSM	ENSMUSG00000042797.10	ENSMUST00000206389.2	3737	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	4.5	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAATGTGTATATGTGAAT	NA	False	NA	NA	False	AAGAAA	-5	NA	97387496	97373212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_97375912_97378177_97378295_97386575
transcript_85068.known	chr7	+	2794	15	FSM	ENSMUSG00000030774.14	ENSMUST00000206984.2	2794	15	0	0	0	0	multi-exon	TRUE	canonical	3	118	junction_1	35.6279671159656	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATAGCATTGAGAGATT	NA	False	NA	NA	False	NA	NA	NA	97437747	97561090	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_97438182_97503642_97503857_97514678_97514780_97515268_97515417_97520781_97520820_97532678_97532796_97535504_97535680_97538163_97538228_97543171_97543221_97547731_97547845_97549546_97549665_97552843_97552944_97553844_97554042_97557014_97557153_97560302
transcript_85070.known	chr7	+	3065	15	FSM	ENSMUSG00000030774.14	ENSMUST00000033040.12	3065	15	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	56.3067853960129	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGAAGTGTGTCTTTTTTC	NA	False	NA	19	True	AATAAA	-20	NA	97492141	97561588	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_97492349_97503642_97503857_97514678_97514780_97515268_97515417_97520781_97520820_97532678_97532796_97535504_97535680_97538163_97538228_97543171_97543221_97547731_97547845_97549546_97549665_97552843_97552944_97553844_97554042_97557014_97557153_97560302
transcript_85075.known	chr7	-	4498	13	FSM	ENSMUSG00000035547.15	ENSMUST00000040971.14	4498	13	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_9	14.761765552339	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTGTTTCATTTTTCC	NA	False	NA	1	True	AATAAA	-23	NA	97827481	97770765	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_97773263_97774448_97774586_97775035_97775152_97775452_97775650_97777679_97777803_97778450_97778647_97780397_97780476_97780882_97781077_97782039_97782233_97784966_97785176_97801018_97801151_97811122_97811318_97827250
transcript_85078.nnic	chr7	+	650	3	NNC	ENSMUSG00000097749.3	novel	464	3	NA	NA	1098	3106	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAGACTATCCATAAGTTC	NA	False	NA	NA	False	NA	NA	NA	97827545	97831714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_97827741_97828531_97828618_97831345
transcript_8508.known	chr10	-	1540	10	FSM	ENSMUSG00000020232.18	ENSMUST00000105324.9	1540	10	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_9	161.527966465926	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGTTAATATTTGTGGC	NA	False	NA	-11	True	AATAAA	-17	NA	81186260	81181884	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185323_81185967_81186024_81186106
transcript_85080.known	chr7	-	2144	1	FSM	ENSMUSG00000074006.4	ENSMUST00000098281.4	2144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTCTGTGGTGTGGTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	97794709	97792565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_97792600_97794700
transcript_85083.known	chr7	-	11340	11	FSM	ENSMUSG00000030760.15	ENSMUST00000033020.14	11340	11	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_1	20.7511445467473	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCGGTCTGTGAAACTGT	NA	False	NA	NA	False	AATAAA	-14	NA	97958745	97855595	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_97866098_97867262_97867309_97873118_97873224_97875605_97875708_97893155_97893215_97901096_97901133_97906902_97906985_97908611_97908665_97910793_97910847_97915343_97915455_97958554
transcript_85092.nic	chr7	-	999	6	ISM	ENSMUSG00000030760.15	ENSMUST00000151258.8	1440	12	-46	35010	-36	437	5prime_fragment	FALSE	canonical	3	223	junction_1	6.40624695121879	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGGAATTATTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	97958781	97900659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_97901133_97906902_97906985_97908611_97908665_97910793_97910847_97915343_97915455_97958554
transcript_85095.nic	chr7	-	1601	2	ISM	ENSMUSG00000030760.15	ENSMUST00000137899.2	441	5	-68	12984	-36	-12984	5prime_fragment	FALSE	canonical	3	227	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAGAGAGAGAGAGAGAAA	NA	False	NA	NA	False	NA	NA	NA	97958781	97914080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_97915455_97958554
transcript_85096.known	chr7	-	1440	12	FSM	ENSMUSG00000030760.15	ENSMUST00000151258.8	1440	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	85.8415800151892	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAGTACTGGCAAAATACC	NA	False	NA	-48	True	ATTAAA	-16	NA	97958735	97865649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_97866098_97867262_97867309_97873118_97873224_97875605_97875708_97879656_97879821_97893155_97893215_97901096_97901133_97906902_97906985_97908611_97908665_97910793_97910847_97915343_97915455_97958554
transcript_85097.known	chr7	-	2310	2	FSM	ENSMUSG00000049580.13	ENSMUST00000206414.2	2310	2	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAAGACTCTGTTCTGGGT	NA	False	NA	NA	False	GATAAA	-18	NA	98010495	98000074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_98002338_98010448
transcript_8510.known	chr10	-	1621	9	FSM	ENSMUSG00000020232.18	ENSMUST00000020454.11	1621	9	0	0	0	0	multi-exon	FALSE	canonical	3	490	junction_7	50.249222630803	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGTTAATATTTGTGGC	NA	False	NA	-11	True	AATAAA	-17	NA	81186258	81181884	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185323_81185967
transcript_85101.known	chr7	-	7693	20	FSM	ENSMUSG00000035401.10	ENSMUST00000205276.2	7693	20	0	0	0	0	multi-exon	TRUE	canonical	3	39	junction_14	16.3198636678896	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTGAATTTTAAAGACTCC	3506	False	NA	NA	False	AATAAA	-26	NA	98305986	98236343	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_98240092_98242537_98243018_98243958_98244520_98246239_98246392_98249878_98250035_98251789_98251955_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98270597_98270748_98275672_98275928_98279337_98279615_98286467_98286728_98290699_98290876_98294373_98294416_98295655_98295731_98297011_98297112_98303950_98304060_98305680
transcript_85111.known	chr7	-	1133	4	FSM	ENSMUSG00000086477.4	ENSMUST00000148776.2	1133	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	8.17856276425687	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACACCCTCTAATTGGA	9364	False	NA	NA	False	AATAAA	-21	NA	98352135	98331542	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_98332125_98342226_98342478_98342554_98342809_98352089
transcript_85113.nnic	chr7	-	731	3	NNC	ENSMUSG00000086477.4	novel	1133	4	NA	NA	-29	6235	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	10	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCAGTCTGTGATTTACCC	9335	False	NA	NA	False	NA	NA	NA	98352164	98342196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_98342478_98342554_98342809_98351968
transcript_85114.nic	chr7	-	644	3	ISM	ENSMUSG00000086477.4	ENSMUST00000148776.2	1133	4	-63	10654	-63	6235	5prime_fragment	FALSE	canonical	3	5	junction_2	7.5	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCAGTCTGTGATTTACCC	9301	False	NA	NA	False	NA	NA	NA	98352198	98342196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_98342478_98342554_98342809_98352089
transcript_85117.known	chr7	+	404	1	FSM	ENSMUSG00000109468.2	ENSMUST00000207556.2	404	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGACCTGCTTATTCTATT	NA	False	NA	NA	False	NA	NA	NA	98790799	98791203	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_98790800_98791200
transcript_85118.known	chr7	-	2262	8	FSM	ENSMUSG00000030747.6	ENSMUST00000033001.6	2262	8	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_4	10.965623464226	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTTGTTGCTTAATGC	NA	False	NA	NA	False	AATAAA	-18	NA	98831926	98802864	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_98803908_98806183_98806387_98807359_98807535_98808039_98808245_98813841_98813913_98814288_98814397_98818904_98819034_98831598
transcript_8512.known	chr10	-	1502	9	FSM	ENSMUSG00000020232.18	ENSMUST00000122993.8	1502	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_8	193.736572115334	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGTTAATATTTGTGGC	NA	False	NA	-11	True	AATAAA	-17	NA	81186025	81181884	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185437_81185967
transcript_85120.known	chr7	-	1780	6	FSM	ENSMUSG00000052396.8	ENSMUST00000064231.8	1780	6	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_3	4.4	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTTCTTTTCTCTCTCC	NA	False	NA	-1	True	AATAAA	-20	NA	98887826	98868290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_98869167_98871459_98871660_98872199_98872375_98872707_98872913_98881664_98881844_98887681
transcript_85121.known	chr7	+	4920	3	FSM	ENSMUSG00000055407.15	ENSMUST00000127492.2	4920	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	24	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTTTCTTGATCGTATTT	NA	False	NA	6	True	AATAAA	-16	NA	98916695	98969559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_98918521_98964895_98965110_98966678
transcript_85122.known	chr7	+	2275	3	FSM	ENSMUSG00000055407.15	ENSMUST00000208605.2	2275	3	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_2	18	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGTGTCTCTGGCTCTGTG	NA	False	NA	13	True	AATAAA	-19	NA	98917612	98986344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_98918521_98964895_98965110_98985191
transcript_85129.known	chr7	-	2128	6	FSM	ENSMUSG00000070436.13	ENSMUST00000207849.2	2128	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	741.154936568596	1549	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATATCATTCTTTCTAAG	NA	False	NA	84	True	ATTAAA	-11	NA	99002321	98994601	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99001030_99001075_99002259
transcript_85130.known	chr7	-	2173	6	FSM	ENSMUSG00000070436.13	ENSMUST00000208119.2	2173	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_5	754.843400977978	1528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCATTCTTTCTAAGACAAA	NA	False	NA	89	True	ATTAAA	-16	NA	99002321	98994596	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002088_99002173_99002259
transcript_85131.known	chr7	-	2274	5	FSM	ENSMUSG00000070436.13	ENSMUST00000169437.9	2274	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_4	667.492462504259	1590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAAAGCCTGTGATTTATG	NA	False	NA	NA	False	ATTAAA	-30	NA	99002321	98994582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002088
transcript_85134.known	chr7	-	2215	5	FSM	ENSMUSG00000070436.13	ENSMUST00000094154.6	2215	5	0	0	0	0	multi-exon	FALSE	canonical	3	1409	junction_4	114.233313879971	1841	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTCTTTCTAAGACAAAG	NA	False	NA	90	True	ATTAAA	-17	NA	99002446	98994595	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002259
transcript_85196.known	chr7	-	1908	7	FSM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	0	0	0	0	multi-exon	FALSE	canonical	3	4974	junction_1	3419.39811549083	164082	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATGAGTATGCAATTATT	8335	False	NA	-12	True	AATAAA	-29	NA	99132945	99127102	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
transcript_85197.known	chr7	-	952	6	FSM	ENSMUSG00000030744.14	ENSMUST00000107096.2	952	6	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	5578.96687210096	2777	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATTAAACTCATGAGTATG	8422	False	NA	-20	True	AATAAA	-21	NA	99132858	99127110	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_99127523_99129110_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
transcript_85198.known	chr7	-	489	6	FSM	ENSMUSG00000030744.14	ENSMUST00000208532.2	489	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	5856.28204238833	967	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGACTGGATTGTGTCC	8437	False	NA	-34	True	AATAAA	-36	NA	99132843	99128088	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_99128159_99128480_99128535_99130903_99130999_99131467_99131562_99131776_99131908_99132798
transcript_85199.known	chr7	-	3183	4	FSM	ENSMUSG00000030744.14	ENSMUST00000128725.2	3183	4	0	0	0	0	multi-exon	FALSE	canonical	3	13120	junction_3	644.451877351771	1306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAGACAAGGCCTGACT	8423	False	NA	-45	True	AATAAA	-25	NA	99132857	99128099	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_99130999_99131467_99131562_99131776_99131908_99132798
transcript_852.nic	chr1	+	493	3	ISM	ENSMUSG00000025915.15	ENSMUST00000189050.2	737	5	-80	4042	-31	2881	5prime_fragment	FALSE	canonical	3	110	junction_1	19	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCTGGGCTGAGAAATTG	9783	False	NA	NA	False	AGTAAA	-14	NA	9918465	9938737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr1_+_9918611_9935355_9935574_9938607
transcript_85201.known	chr7	-	4369	14	FSM	ENSMUSG00000030737.18	ENSMUST00000107088.8	4369	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	2.1483446221183	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATCCTTCTAAACTGCAT	NA	False	NA	NA	False	ATTAAA	-36	NA	99356368	99307595	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_99309384_99310310_99310432_99310724_99310790_99311653_99311818_99313985_99314152_99316098_99316457_99320156_99320251_99331901_99332093_99334682_99334782_99335090_99335325_99338069_99338233_99339638_99339777_99340963_99341101_99355717
transcript_85202.known	chr7	-	3341	3	FSM	ENSMUSG00000035239.7	ENSMUST00000036331.7	3341	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTTGGAGTGAGTTAGAT	6025	False	NA	NA	False	AATAAA	-15	NA	99477624	99460645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_99463515_99472528_99472741_99477364
transcript_85203.known	chr7	+	2731	19	FSM	ENSMUSG00000035211.10	ENSMUST00000036155.10	2731	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.08297714942322	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAATGTGTGCCAAGTATC	NA	False	NA	NA	False	AATAAA	-17	NA	99508322	99567029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_99508438_99511496_99511565_99516553_99516652_99520488_99520665_99524361_99524434_99525424_99525498_99528576_99528675_99535209_99535344_99546697_99546827_99547588_99547795_99551912_99551954_99555657_99555784_99560174_99560269_99561003_99561120_99563373_99563698_99565116_99565313_99565904_99566021_99566188_99566295_99566586
transcript_85207.known	chr7	-	1553	6	FSM	ENSMUSG00000035227.8	ENSMUST00000208477.2	1553	6	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_5	975.780180163545	422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGAGTCTTGAAAGAAGG	NA	False	NA	-2	True	AATAAA	-19	NA	99508066	99488109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_99489091_99493906_99494042_99497505_99497667_99498182_99498267_99498363_99498460_99507970
transcript_85208.known	chr7	-	1610	6	FSM	ENSMUSG00000035227.8	ENSMUST00000209032.2	1610	6	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_4	1023.35436677624	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTGGAGTCTTGAAAGAAG	NA	False	NA	-3	True	AATAAA	-18	NA	99508118	99488110	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_99489091_99493906_99494042_99497505_99497667_99498182_99498267_99505619_99505722_99507970
transcript_85219.known	chr7	-	736	4	FSM	ENSMUSG00000035227.8	ENSMUST00000208465.2	736	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1156.90429835642	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTCTAGCTTTGTGCCAT	NA	False	NA	NA	False	NA	NA	NA	99508106	99488634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_99489091_99493906_99493967_99498182_99498267_99507970
transcript_85220.known	chr7	-	3069	12	FSM	ENSMUSG00000030726.17	ENSMUST00000032969.14	3069	12	0	0	0	0	multi-exon	FALSE	canonical	3	502	junction_4	47.2898570362863	410	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGTGCGAGTTGGAGT	NA	False	NA	-4	True	AATAAA	-18	NA	99770772	99731317	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_99733062_99737270_99737350_99738858_99738963_99742578_99742689_99745579_99745743_99748670_99748744_99749626_99749889_99755769_99755903_99757718_99757759_99761476_99761580_99768880_99768937_99770570
transcript_85227.nnic	chr7	+	795	3	NNC	ENSMUSG00000030725.5	novel	1663	2	NA	NA	285	274	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	41	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTTGAATGTCTCAAGTT	NA	False	NA	NA	False	AATAAA	-21	NA	99808850	99810135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_99808955_99809380_99809666_99809729
transcript_85228.known	chr7	+	1012	4	FSM	ENSMUSG00000035165.15	ENSMUST00000049333.13	1012	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTATTTGCATTGATTCAT	9316	False	NA	NA	False	GATAAA	-13	NA	99827903	99834071	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_99827974_99830357_99830482_99831939_99832031_99833344
transcript_85229.known	chr7	+	8834	14	FSM	ENSMUSG00000030729.18	ENSMUST00000084935.11	8834	14	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_8	2.32557176274323	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCATGAGTGTCTATGCAC	NA	False	NA	14	True	AATAAA	-14	NA	99876600	99928074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_99877242_99899498_99899667_99901391_99901499_99902439_99902525_99904740_99904825_99909090_99909285_99910806_99910997_99911272_99911371_99912117_99912296_99915871_99915966_99916692_99916823_99917323_99917514_99919534_99919669_99921533
transcript_85230.known	chr7	+	4060	15	FSM	ENSMUSG00000030729.18	ENSMUST00000054436.9	4060	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	2.91372543633873	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGAGTGTCTATGCACT	NA	False	NA	15	True	AATAAA	-15	NA	99876916	99928075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_99877242_99899498_99899667_99901391_99901499_99902439_99902525_99904740_99904825_99909090_99909285_99910806_99910997_99911272_99911371_99912117_99912296_99915871_99915966_99916692_99916823_99917323_99917514_99919534_99919669_99921533_99921906_99926364
transcript_85231.nic	chr7	+	1585	8	ISM	ENSMUSG00000051048.18	ENSMUST00000208565.2	1215	9	3919	-462	3919	0	3prime_fragment	FALSE	canonical	1	3	junction_5	4.23300925429402	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTTCTAACAGCGACTAT	NA	False	NA	8	True	ATTAAA	-15	NA	99954706	99968906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_99954871_99955073_99955251_99959993_99960059_99962412_99962573_99963814_99963878_99966248_99966318_99967188_99967286_99968116
transcript_85232.known	chr7	+	1884	10	FSM	ENSMUSG00000051048.18	ENSMUST00000138465.3	1884	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.88364546438832	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCTTCTAACAGCGACTA	NA	False	NA	7	True	ATTAAA	-14	NA	99943016	99968905	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_99943178_99947104_99947255_99949843_99949896_99954706_99954871_99955073_99955251_99959993_99960059_99962412_99962573_99966248_99966318_99967188_99967286_99968116
transcript_85241.nic	chr7	+	378	2	ISM	ENSMUSG00000047248.21	ENSMUST00000156559.8	1909	10	-61	32828	-13	-32828	5prime_fragment	FALSE	canonical	3	38	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAAGCCTCCTACTTCTGT	NA	False	NA	NA	False	NA	NA	NA	100021426	100023571	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_100021704_100023470
transcript_85246.known	chr7	-	2592	8	FSM	ENSMUSG00000030708.15	ENSMUST00000207405.2	2592	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	23.8353193597147	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTTACTGTGCCATACACA	NA	False	NA	NA	False	NA	NA	NA	100164167	100150922	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_100152518_100153122_100153200_100153713_100153828_100155288_100155403_100156582_100156741_100159901_100160064_100160956_100161061_100163899
transcript_85258.known	chr7	+	1391	2	FSM	ENSMUSG00000044881.8	ENSMUST00000054310.4	1391	2	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_1	0	852	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCTAGTCTGCTTCTCAT	7571	False	NA	NA	False	NA	NA	NA	100186306	100189576	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_100186400_100188278
transcript_85259.known	chr7	+	742	2	FSM	ENSMUSG00000044881.8	ENSMUST00000120454.3	742	2	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_1	0	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTCAAAGGAGTGAACTCG	7703	False	NA	-4	True	AATAAA	-5	NA	100186438	100188986	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_100186473_100188278
transcript_8526.known	chr10	-	1463	10	FSM	ENSMUSG00000020232.18	ENSMUST00000105323.8	1463	10	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_9	133.860992944542	487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTAATATTTGTGGCTTT	NA	False	NA	-8	True	AATAAA	-20	NA	81186314	81181881	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185323_81185967_81186024_81186240
transcript_8527.known	chr10	-	597	2	FSM	ENSMUSG00000020232.18	ENSMUST00000134857.2	597	2	0	0	0	0	multi-exon	FALSE	canonical	3	577	junction_1	0	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAAGTTAATATTTGTGG	NA	False	NA	-12	True	AATAAA	-16	NA	81182564	81181885	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81182312_81182393
transcript_85271.known	chr7	-	2144	1	FSM	ENSMUSG00000030706.18	ENSMUST00000208916.2	2144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAGAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	100232282	100230138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_100230100_100232300
transcript_85272.known	chr7	-	1911	8	FSM	ENSMUSG00000030701.18	ENSMUST00000116287.9	1911	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	7.51868420968044	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTGGCTTTGCTTGTTT	NA	False	NA	-2	True	AATAAA	-16	NA	100307663	100293106	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_100294277_100294776_100294877_100299134_100299240_100302860_100302901_100303808_100303912_100304455_100304609_100305941_100306018_100307499
transcript_85273.known	chr7	-	1926	8	FSM	ENSMUSG00000030701.18	ENSMUST00000107047.10	1926	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	8.07869458034211	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGGCTTTGCTTGTTTTG	NA	False	NA	0	True	AATAAA	-18	NA	100311572	100293104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_100294277_100294776_100294877_100302860_100302901_100303808_100303912_100304455_100304609_100305941_100306018_100311125_100311200_100311364
transcript_85274.known	chr7	-	1806	7	FSM	ENSMUSG00000030701.18	ENSMUST00000107044.10	1806	7	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	4.3365372770859	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTGGCTTTGCTTGTTT	NA	False	NA	-2	True	AATAAA	-16	NA	100307663	100293106	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_100294277_100294776_100294877_100302860_100302901_100303808_100303912_100304455_100304609_100305941_100306018_100307499
transcript_85277.known	chr7	+	338	3	FSM	ENSMUSG00000108866.2	ENSMUST00000207308.2	338	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTCATCAGCTTGTCCTC	4876	False	NA	NA	False	NA	NA	NA	100324294	100326587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_100324371_100325324_100325518_100326518
transcript_85279.known	chr7	+	525	2	FSM	ENSMUSG00000108866.2	ENSMUST00000208164.2	525	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTAGCCACCCTTATGGT	4876	False	NA	NA	False	NA	NA	NA	100324294	100326967	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_100324371_100326518
transcript_8528.known	chr10	-	2501	7	FSM	ENSMUSG00000020232.18	ENSMUST00000132313.2	2501	7	0	0	0	0	multi-exon	FALSE	canonical	3	543	junction_2	31.1202863454407	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGTTAATATTTGTGGC	NA	False	NA	-11	True	AATAAA	-17	NA	81186203	81181884	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719
transcript_85282.known	chr7	+	6388	9	FSM	ENSMUSG00000029461.18	ENSMUST00000107042.9	6388	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	17.2699160391705	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGTTTGATCAAATAATTT	NA	False	NA	NA	False	NA	NA	NA	100355841	100490588	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_100356101_100436010_100436099_100462126_100462208_100467942_100467970_100473338_100473465_100480534_100480678_100483215_100483391_100484533_100484665_100485230
transcript_85284.known	chr7	+	4077	8	FSM	ENSMUSG00000029461.18	ENSMUST00000207875.2	4077	8	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	3.48173074484398	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAAACAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	100355926	100488389	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_100356101_100436010_100436099_100462126_100462208_100473338_100473465_100480534_100480678_100483215_100483391_100484533_100484665_100485230
transcript_85286.nnic	chr7	+	1036	7	NIC	ENSMUSG00000029461.18	novel	4077	8	NA	NA	15	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_3	14.1705876926667	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGAGCCTCCCCTCGTGCC	NA	False	NA	9	True	NA	NA	NA	100355856	100485404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_100356101_100436010_100436099_100462126_100462208_100480534_100480678_100483215_100483391_100484533_100484665_100485230
transcript_85288.known	chr7	-	2851	11	FSM	ENSMUSG00000008318.11	ENSMUST00000008462.11	2851	11	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_8	6.09590026165127	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACGAGCTTTTTTTCTGT	2158	False	NA	NA	False	NA	NA	NA	100512653	100495053	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_100496485_100496602_100496802_100497225_100497481_100497628_100497711_100498005_100498087_100499271_100499530_100500299_100500380_100500560_100500728_100500846_100500922_100502252_100502323_100512500
transcript_8529.known	chr10	-	627	2	FSM	ENSMUSG00000020232.18	ENSMUST00000129482.2	627	2	0	0	0	0	multi-exon	FALSE	canonical	3	498	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCTCCCAAATGGGCCCA	NA	False	NA	NA	False	AAAAAG	-7	NA	81186151	81184879	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81185323_81185967
transcript_85290.known	chr7	-	3011	3	FSM	ENSMUSG00000032860.6	ENSMUST00000037540.5	3011	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTCTGTGCATTTTGTTG	3103	False	NA	NA	False	ATTAAA	-19	NA	100661205	100645774	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_100648308_100652770_100652962_100660918
transcript_85291.known	chr7	-	2137	2	FSM	ENSMUSG00000032860.6	ENSMUST00000178340.3	2137	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTTCTGGTTCTTGGGGTT	3127	False	NA	NA	False	NA	NA	NA	100661181	100646433	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_100648308_100660918
transcript_85295.known	chr7	+	1155	9	FSM	ENSMUSG00000030691.16	ENSMUST00000137196.8	1155	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	8.89434511361011	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTATTTATTTTATTTAT	NA	False	NA	NA	False	AATAAA	-24	NA	100757982	100853134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_100758247_100759945_100760044_100788357_100788404_100826350_100826428_100835594_100835740_100840873_100841008_100846086_100846142_100847687_100847817_100852927
transcript_85296.known	chr7	+	4316	20	FSM	ENSMUSG00000030691.16	ENSMUST00000098250.10	4316	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_17	7.64481610612047	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAAAATGAAATTAAGT	NA	False	NA	-7	True	TATAAA	-10	NA	100757981	100933589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_100758247_100759945_100760044_100788357_100788404_100826350_100826428_100835594_100835740_100840873_100841008_100846086_100846142_100847687_100847817_100883078_100883202_100893327_100893424_100899651_100899769_100902736_100902842_100908818_100908981_100920776_100920912_100925824_100925909_100926032_100926211_100926616_100926838_100927557_100927688_100927778_100927862_100931656
transcript_85297.known	chr7	-	411	1	FSM	ENSMUSG00000083121.4	ENSMUST00000119683.2	411	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	234	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATATTTTTGTTTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	100804262	100803851	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_100803900_100804300
transcript_85298.known	chr7	-	6459	18	FSM	ENSMUSG00000047767.18	ENSMUST00000120267.9	6459	18	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_10	9.70606060442378	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGCTAGATACTATTTAAAT	8377	False	NA	NA	False	NA	NA	NA	100951295	100934527	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_100939142_100939376_100939479_100939569_100939618_100939788_100939939_100940693_100940800_100941085_100941207_100941314_100941387_100941560_100941632_100942579_100942686_100943082_100943192_100944065_100944129_100945327_100945442_100945714_100945781_100945963_100946216_100946366_100946441_100948212_100948316_100949318_100949419_100951107
transcript_8530.known	chr10	-	3057	14	FSM	ENSMUSG00000020235.17	ENSMUST00000140901.8	3057	14	0	0	0	0	multi-exon	FALSE	canonical	3	644	junction_9	52.0083061185946	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTGGTTGTTGCTGTTTA	NA	False	NA	NA	False	NA	NA	NA	81214350	81202055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81203385_81203474_81203568_81203964_81204070_81204356_81204591_81204907_81205093_81205171_81205275_81205804_81205871_81206031_81206216_81206298_81206382_81206530_81206659_81206788_81206853_81206928_81207055_81207178_81207289_81214103
transcript_85300.known	chr7	-	2083	17	FSM	ENSMUSG00000047767.18	ENSMUST00000122116.8	2083	17	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_10	7.54750579661917	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTGCCTCTTTGAAGCA	8394	False	NA	-2	True	NA	NA	NA	100951278	100938823	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_100939142_100939376_100939479_100939569_100939618_100939788_100939939_100940693_100940800_100941085_100941207_100941314_100941387_100941560_100941632_100942579_100942686_100943082_100943192_100945327_100945442_100945714_100945781_100945963_100946216_100946366_100946441_100948212_100948316_100949318_100949419_100951107
transcript_85306.known	chr7	+	1400	7	FSM	ENSMUSG00000030688.16	ENSMUST00000032927.14	1400	7	0	0	0	0	multi-exon	TRUE	canonical	3	28	junction_2	26.7581763205193	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCAGCTCTTTGTGCCTGCT	NA	False	NA	7	True	AATAAA	-18	NA	100970319	100995515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_100970560_100970920_100971241_100991704_100991853_100992390_100992495_100993123_100993242_100994841_100994895_100995098
transcript_85307.known	chr7	-	468	2	FSM	ENSMUSG00000110239.2	ENSMUST00000209980.2	468	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCACACTTGCATAAGGGTA	6938	False	NA	NA	False	ATTAAA	-13	NA	100997191	100996615	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_100996946_100997053
transcript_85309.known	chr7	+	3693	21	FSM	ENSMUSG00000032812.19	ENSMUST00000098243.4	3693	21	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	25.1838738084513	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCCTTCCTGTCAGTT	NA	False	NA	NA	False	TATAAA	-14	NA	101043574	101061793	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_101043675_101043940_101044116_101045267_101045403_101047502_101047639_101047902_101048006_101048685_101048882_101049189_101049242_101049334_101049499_101049598_101049812_101050089_101050196_101050596_101050745_101050829_101050917_101050998_101051068_101051265_101051384_101053171_101053286_101053486_101053633_101057253_101057337_101058320_101058372_101058497_101058562_101060126_101060277_101060510
transcript_85311.known	chr7	+	5147	34	FSM	ENSMUSG00000032812.19	ENSMUST00000107010.9	5147	34	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	24.8085044217444	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGCTGAGGCCTGTGATG	NA	False	NA	18	True	TATAAA	-23	NA	100997273	101061101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_100997407_101016227_101016306_101022162_101022709_101034068_101034248_101034758_101034824_101035355_101035481_101035598_101035749_101035996_101036067_101036312_101036434_101037193_101037397_101037820_101037928_101039270_101039471_101041042_101041129_101042653_101042837_101043940_101044116_101045267_101045403_101047502_101047639_101047902_101048006_101048685_101048882_101049189_101049242_101049334_101049499_101049598_101049812_101050089_101050196_101050596_101050745_101050829_101050917_101050998_101051068_101051265_101051384_101053171_101053286_101053486_101053633_101057253_101057337_101058320_101058372_101058497_101058562_101060126_101060277_101060510
transcript_85312.known	chr7	-	862	1	FSM	ENSMUSG00000067121.3	ENSMUST00000086958.3	862	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTCTAAATTGTTAACCT	NA	False	NA	NA	False	NA	NA	NA	101223528	101222666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_101222700_101223500
transcript_85313.known	chr7	+	2287	17	FSM	ENSMUSG00000001829.18	ENSMUST00000106998.8	2287	17	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	246.748226943984	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAATCCACCTTGCCCTCAT	NA	False	NA	18	True	AATAAA	-24	NA	101312911	101437017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_101313421_101316454_101316507_101336494_101336582_101355689_101355794_101360617_101360708_101371911_101372041_101400440_101400539_101412787_101412903_101422286_101422365_101423398_101423455_101427778_101427824_101428408_101428571_101434534_101434692_101435306_101435381_101435493_101435614_101435852_101435958_101436711
transcript_85314.known	chr7	+	4627	16	FSM	ENSMUSG00000001829.18	ENSMUST00000001884.14	4627	16	0	0	0	0	multi-exon	FALSE	canonical	3	662	junction_8	67.7342519622745	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTGTGTGAGTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	101312839	101439375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_101313421_101316454_101316507_101336494_101336582_101355689_101355794_101371911_101372041_101400440_101400539_101412787_101412903_101422286_101422365_101423398_101423455_101427778_101427824_101428408_101428571_101434534_101434692_101435306_101435381_101435493_101435614_101435852_101435958_101436711
transcript_85318.nnic	chr7	+	1284	7	NNC	ENSMUSG00000001829.18	novel	2199	14	NA	NA	-26	789	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_6	280.167806858675	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTAGCTGTCATGTTCATT	NA	False	NA	NA	False	NA	NA	NA	101312937	101401318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_101313421_101316454_101316507_101336494_101336582_101355689_101355794_101371911_101372041_101400440_101400539_101400987
transcript_85319.known	chr7	+	2171	3	FSM	ENSMUSG00000001829.18	ENSMUST00000142803.8	2171	3	0	0	0	0	multi-exon	FALSE	canonical	3	717	junction_2	28.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAAGGAAAAAGAAGGA	NA	False	NA	NA	False	NA	NA	NA	101312963	101338156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_101313421_101316454_101316507_101336494
transcript_85322.nnic	chr7	+	759	3	NNC	ENSMUSG00000073985.3	novel	3672	2	NA	NA	318	4701	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGACCCTCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	101486275	101496679	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_101486625_101488008_101488227_101496487
transcript_85323.nnic	chr7	+	752	3	NNC	ENSMUSG00000073985.3	novel	1310	3	NA	NA	-52	4701	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGACCCTCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	101487036	101496679	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_101487379_101488008_101488227_101496487
transcript_85324.known	chr7	-	715	3	FSM	ENSMUSG00000032725.11	ENSMUST00000211604.2	715	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGTGCCCCATGCAGCAG	NA	False	NA	NA	False	NA	NA	NA	101490383	101489454	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_101489669_101489797_101489934_101490018
transcript_85325.known	chr7	+	1609	3	FSM	ENSMUSG00000007946.12	ENSMUST00000008090.11	1609	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCCGACCACCTTTCTGA	6584	False	NA	NA	False	AATAAA	-21	NA	101467519	101471933	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_101467922_101469987_101470176_101470914
transcript_85335.known	chr7	-	1307	7	FSM	ENSMUSG00000001827.13	ENSMUST00000106983.8	1307	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	137.705502996632	595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	1455	False	NA	0	True	AATAAA	-31	NA	101519995	101507537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604_101517675_101518363_101518512_101519815
transcript_8534.known	chr10	+	3971	10	FSM	ENSMUSG00000034854.9	ENSMUST00000044844.9	3971	10	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_9	22.6077666104176	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAGTCAACCCTTTACAG	822	False	NA	30	True	AATAAA	-21	NA	81193324	81202059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_81193721_81195915_81196127_81196932_81197072_81197147_81197334_81197858_81197952_81198038_81198132_81198521_81198693_81198766_81198862_81199386_81199518_81199603
transcript_85340.known	chr7	-	1286	7	FSM	ENSMUSG00000001827.13	ENSMUST00000106986.9	1286	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	140.150415229099	908	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	1560	False	NA	0	True	AATAAA	-31	NA	101519890	101507537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604_101517759_101518363_101518512_101519815
transcript_85352.nic	chr7	-	1196	6	NIC	ENSMUSG00000001827.13	novel	1286	7	NA	NA	-107	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_5	123.544971569061	901	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	3118	False	NA	0	True	AATAAA	-31	NA	101518332	101507537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604_101517759_101518199
transcript_85354.known	chr7	-	873	6	FSM	ENSMUSG00000064307.14	ENSMUST00000078448.11	873	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	5.00399840127872	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAAGTCCCCTGTACCTT	2536	False	NA	NA	False	AATAAA	-22	NA	101583064	101562196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_101562420_101562641_101562791_101564768_101564975_101569843_101569982_101570710_101570774_101582970
transcript_85359.known	chr7	+	818	5	FSM	ENSMUSG00000030649.19	ENSMUST00000143835.8	818	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	227.058775430504	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGGTGTAGGGGAGTGCCT	8370	False	NA	NA	False	NA	NA	NA	101546167	101548249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_101546568_101546939_101547025_101547148_101547279_101547760_101547821_101548106
transcript_8536.known	chr10	-	691	4	FSM	ENSMUSG00000020234.11	ENSMUST00000020456.5	691	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGGTGATCTCTCCCACG	401	False	NA	NA	False	GATAAA	-37	NA	81201650	81199857	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81200071_81200375_81200502_81200575_81200815_81201537
transcript_85364.known	chr7	-	1039	5	FSM	ENSMUSG00000001827.13	ENSMUST00000106982.8	1039	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	136.80711787038	400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	4836	False	NA	0	True	AATAAA	-31	NA	101516614	101507537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101516484
transcript_85365.nic	chr7	-	1987	5	ISM	ENSMUSG00000001827.13	ENSMUST00000106986.9	1286	7	1208	0	76	0	intron_retention	FALSE	canonical	3	257	junction_4	35.4788669492136	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	2768	False	NA	0	True	AATAAA	-31	NA	101518682	101507537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604
transcript_85367.known	chr7	-	821	5	FSM	ENSMUSG00000064307.14	ENSMUST00000106966.8	821	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	3.93700393700591	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAAGTCCCCTGTACCTT	2525	False	NA	NA	False	AATAAA	-22	NA	101583075	101562196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_101562420_101562641_101562791_101564768_101564975_101569843_101569982_101582970
transcript_85368.known	chr7	-	872	5	FSM	ENSMUSG00000064307.14	ENSMUST00000106964.8	872	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	5.43139024560011	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGGGCCGATCGCAGCAC	2591	False	NA	NA	False	NA	NA	NA	101583009	101562364	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_101562791_101564768_101564975_101569843_101569982_101570710_101570774_101582970
transcript_8537.known	chr10	-	2780	11	FSM	ENSMUSG00000020235.17	ENSMUST00000138343.2	2780	11	0	0	0	0	multi-exon	FALSE	canonical	3	644	junction_6	55.7831515782319	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCTGTGGAGCCAGTGTC	NA	False	NA	-10	True	ATTAAA	-11	NA	81214297	81203205	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81203385_81203474_81203568_81203964_81204070_81204356_81205871_81206031_81206216_81206298_81206382_81206530_81206659_81206788_81206853_81206928_81207055_81207178_81207289_81214103
transcript_85374.known	chr7	-	835	4	FSM	ENSMUSG00000064307.14	ENSMUST00000106963.2	835	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	6.16441400296898	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTCAGTGGAGTCACCA	2563	False	NA	NA	False	NA	NA	NA	101583037	101562380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_101562791_101564768_101564975_101569843_101569982_101582956
transcript_85377.known	chr7	-	960	4	FSM	ENSMUSG00000001827.13	ENSMUST00000106981.8	960	4	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_2	18.9267594221045	490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	8098	False	NA	0	True	AATAAA	-31	NA	101513352	101507537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131
transcript_85378.known	chr7	+	836	6	FSM	ENSMUSG00000030649.19	ENSMUST00000035395.14	836	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	222.801615793064	618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAATGTCTATTCCCTGTT	7749	False	NA	21	True	AATAAA	-21	NA	101545546	101548747	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_101545658_101546939_101546995_101547153_101547279_101547760_101547821_101548106_101548245_101548400
transcript_85379.known	chr7	+	937	5	FSM	ENSMUSG00000030649.19	ENSMUST00000032884.16	937	5	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	120.728000066265	584	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAATGTCTATTCCCTG	7837	False	NA	19	True	AATAAA	-19	NA	101545634	101548745	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_101545658_101546939_101547025_101547148_101547279_101547760_101547821_101548106
transcript_85380.known	chr7	+	650	5	FSM	ENSMUSG00000030649.19	ENSMUST00000106973.8	650	5	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	224.489420686143	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCCAGGTGTGGTCCCT	7825	False	NA	-39	True	NA	NA	NA	101545622	101548687	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_101545658_101547148_101547279_101547760_101547821_101548106_101548245_101548400
transcript_85381.known	chr7	+	3103	6	FSM	ENSMUSG00000030649.19	ENSMUST00000144207.9	3103	6	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	109.312396369305	1409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTGGTCCAGACTCCTC	7826	False	NA	10	True	NA	NA	NA	101545623	101551056	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_101545658_101546939_101547025_101547148_101547279_101547760_101547821_101548106_101548245_101548400
transcript_85382.known	chr7	+	1328	5	FSM	ENSMUSG00000030649.19	ENSMUST00000098237.9	1328	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	243.886628374743	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATAACTTGGTCCAGACT	9141	False	NA	6	True	NA	NA	NA	101546938	101551052	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_101547025_101547148_101547279_101547760_101547821_101548106_101548245_101550138
transcript_85383.known	chr7	+	1119	5	FSM	ENSMUSG00000030842.13	ENSMUST00000033131.12	1119	5	0	0	0	0	multi-exon	FALSE	canonical	3	733	junction_4	69.0230939613692	2676	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTCTGTCCTGCCCACT	7027	False	NA	28	True	GATAAA	-32	NA	101555110	101561110	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_101555248_101558870_101559017_101559235_101559314_101559626_101559754_101560479
transcript_85384.known	chr7	-	299	3	FSM	ENSMUSG00000001827.13	ENSMUST00000125298.2	299	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	19	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAAGACTCCTTGGCGCTT	2142	False	NA	NA	False	NA	NA	NA	101519308	101517671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_101517759_101518363_101518512_101519244
transcript_85385.known	chr7	+	2862	14	FSM	ENSMUSG00000066306.14	ENSMUST00000209639.2	2862	14	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	49.6768254042921	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAGAAGGAAGTGAGAGCA	2093	False	NA	NA	False	NA	NA	NA	101583317	101648896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_101583525_101626586_101626658_101636932_101637019_101639779_101639860_101640852_101640936_101641844_101641926_101642431_101642520_101643869_101643988_101644603_101644762_101645024_101645143_101645229_101645348_101645641_101645783_101647281_101647405_101647506
transcript_85386.known	chr7	+	7180	25	FSM	ENSMUSG00000066306.14	ENSMUST00000084852.13	7180	25	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	86.0695777973973	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCTTTGGGTCAGTATG	NA	False	NA	37	True	AATAAA	-25	NA	101619027	101664171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_101619177_101626586_101626658_101636932_101637019_101639779_101639860_101640852_101640936_101641844_101641926_101642431_101642520_101643869_101643988_101644603_101644762_101645024_101645143_101645229_101645348_101645641_101645783_101647281_101647405_101647506_101650867_101656692_101656762_101658297_101658418_101658500_101658720_101658823_101658982_101660039_101660287_101661087_101661317_101661948_101662086_101662375_101662553_101662736_101662854_101662944_101663149_101663442
transcript_85392.known	chr7	-	2249	9	FSM	ENSMUSG00000070426.13	ENSMUST00000096639.12	2249	9	0	0	0	0	multi-exon	FALSE	canonical	3	288	junction_4	49.7203114933927	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCCTTTTTTTTTTTGCC	NA	False	NA	0	True	AATAAA	-34	NA	101714365	101668343	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_101669700_101672518_101672621_101673219_101673354_101678218_101678340_101680700_101680809_101684513_101684669_101688756_101688899_101691833_101691872_101714272
transcript_85393.known	chr7	-	2344	9	FSM	ENSMUSG00000070426.13	ENSMUST00000089052.11	2344	9	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_8	114.601483410993	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTGGACACGCATTTGC	NA	False	NA	-15	True	AATAAA	-19	NA	101714676	101668358	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_101669700_101672518_101672621_101673219_101673354_101678218_101678340_101680700_101680809_101684513_101684669_101688756_101688899_101691833_101691872_101714473
transcript_854.known	chr1	+	2553	15	FSM	ENSMUSG00000046101.17	ENSMUST00000171802.8	2553	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_12	9.43857694220254	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTGGTAAATGTATGATT	NA	False	NA	NA	False	NA	NA	NA	9978862	10011179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_9978916_9981899_9982038_9982134_9982266_9982338_9982399_9985698_9985895_9986540_9986664_9986774_9986880_9989244_9989371_9990659_9990898_9994281_9994488_10001005_10001173_10002226_10002407_10004147_10004291_10007220_10007331_10010602
transcript_8540.nic	chr10	+	1513	5	NIC	ENSMUSG00000078440.11	novel	1444	5	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	318.019653480724	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGGCTCCTGCTGTGTG	NA	False	NA	15	True	AATAAA	-19	NA	81220240	81224186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_+_81220461_81221552_81221882_81222246_81222324_81223073_81223315_81223540
transcript_8541.known	chr10	+	786	4	FSM	ENSMUSG00000078440.11	ENSMUST00000142346.8	786	4	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_1	334.282315815041	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGAGGCTGCCTTGGCCC	NA	False	NA	NA	False	NA	NA	NA	81220292	81223285	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_81220461_81221552_81221882_81222246_81222324_81223073
transcript_85411.known	chr7	-	364	4	FSM	ENSMUSG00000070426.13	ENSMUST00000156119.2	364	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	161.332644626629	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTACAGACAACCCCAAGGT	NA	False	NA	NA	False	NA	NA	NA	101714365	101684531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_101684623_101688756_101688899_101691833_101691872_101714272
transcript_85414.known	chr7	+	2298	11	FSM	ENSMUSG00000099481.7	ENSMUST00000094130.4	2298	11	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	17.4482090771517	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAATAAAAGAGAATGCTA	NA	False	NA	NA	False	GGGGCT	-7	NA	101714964	101732288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_101715012_101719103_101719199_101720393_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101728211_101728385_101729735_101729812_101730689_101730818_101731247
transcript_85419.nic	chr7	+	2043	11	NIC	ENSMUSG00000099481.7	novel	2298	11	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	2	17	junction_2	28.6462912084619	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGGAATTATAAAGTTATG	NA	False	NA	-27	True	AATGAA	-32	NA	101714697	101731798	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_101715012_101719103_101719199_101720425_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101728211_101728385_101729735_101729812_101730689_101730818_101731247
transcript_8542.known	chr10	+	1444	5	FSM	ENSMUSG00000078440.11	ENSMUST00000072751.13	1444	5	0	0	0	0	multi-exon	FALSE	canonical	3	742	junction_3	32.2286751201473	3095	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGGCTCCTGCTGTGTG	NA	False	NA	15	True	AATAAA	-19	NA	81220261	81224186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_81220413_81221552_81221882_81222246_81222324_81223073_81223315_81223540
transcript_85425.nic	chr7	+	3109	11	Fusion	ENSMUSG00000100254.2_ENSMUSG00000099481.7	novel	2298	11	NA	NA	8	0	intron_retention	FALSE	canonical	3	7	junction_1	28.9048438847194	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGTGTTGCCGATCTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	101714972	101732969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr7_+_101715150_101719103_101719199_101720393_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101728211_101728385_101729735_101729812_101730689_101730818_101731247
transcript_8543.known	chr10	+	1758	6	FSM	ENSMUSG00000113262.2	ENSMUST00000144647.8	1758	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_5	364.148541120241	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCATGACCTTTTTGTCT	NA	False	NA	NA	False	ATTAAA	-20	NA	81220299	81227394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_81220413_81221552_81221882_81222246_81222324_81223073_81223315_81226192_81226419_81226622
transcript_85431.known	chr7	+	3131	10	FSM	ENSMUSG00000099481.7	ENSMUST00000106950.8	3131	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	31.0606734006004	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGTGTTGCCGATCTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	101714717	101732969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_101715012_101720393_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101728211_101728385_101729735_101729812_101730689_101730818_101731247
transcript_8544.known	chr10	+	495	2	FSM	ENSMUSG00000078440.11	ENSMUST00000145416.2	495	2	0	0	0	0	multi-exon	FALSE	canonical	3	792	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCCGCACAGGGCTATGGA	NA	False	NA	NA	False	NA	NA	NA	81220300	81221935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_81220413_81221552
transcript_8545.known	chr10	+	901	4	FSM	ENSMUSG00000078439.10	ENSMUST00000105322.9	901	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.69967317119759	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCCTTTGTGTAGGCTTAG	NA	False	NA	NA	False	AATAAA	-17	NA	81228884	81231226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_81228994_81229617_81229730_81229921_81229985_81230609
transcript_85450.known	chr7	+	2456	8	FSM	ENSMUSG00000099481.7	ENSMUST00000153176.8	2456	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_7	42.5992239078486	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAAAG	-21	NA	101714726	101729502	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_101715012_101719103_101719199_101720425_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728105_101728211
transcript_85454.known	chr7	-	1713	5	FSM	ENSMUSG00000070424.13	ENSMUST00000106937.8	1713	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	2.12132034355964	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACATGGCTTTTATGACTG	NA	False	NA	NA	False	ATTAAA	-17	NA	101749436	101746086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_101746428_101746514_101746548_101746987_101747718_101748640_101748851_101749037
transcript_85458.known	chr7	-	495	4	FSM	ENSMUSG00000070424.13	ENSMUST00000106935.8	495	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.94392028877595	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTCTTAGGACTCTTGG	NA	False	NA	NA	False	NA	NA	NA	101748700	101746320	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_101746428_101746514_101746548_101747422_101747718_101748640
transcript_8546.known	chr10	+	949	3	FSM	ENSMUSG00000078439.10	ENSMUST00000118206.2	949	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCCTTTGTGTAGGCTTAG	NA	False	NA	NA	False	AATAAA	-17	NA	81229460	81231226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_81229730_81229921_81229985_81230609
transcript_85460.known	chr7	-	1518	6	FSM	ENSMUSG00000070424.13	ENSMUST00000094128.9	1518	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	2.75680975041804	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATGGCTTTTATGACTGG	NA	False	NA	NA	False	ATTAAA	-18	NA	101752052	101746085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_101746428_101746514_101746548_101746987_101747718_101748640_101748851_101749037_101749149_101751960
transcript_85461.known	chr7	-	3748	23	FSM	ENSMUSG00000063550.9	ENSMUST00000211235.2	3748	23	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_13	14.0777064247632	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTTTTGATCTCTCTATA	9976	False	NA	NA	False	AAGAAA	-17	NA	101859349	101783684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829634_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859224
transcript_85462.known	chr7	-	6694	33	FSM	ENSMUSG00000063550.9	ENSMUST00000210682.2	6694	33	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_23	43.7886324967736	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTGGTATTGACTTTCT	9970	False	NA	-6	True	AATAAA	-20	NA	101859383	101768604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_101769879_101769965_101770078_101772744_101772900_101773359_101773602_101774309_101774532_101775656_101775800_101776970_101777115_101778150_101778309_101779022_101779290_101781838_101782069_101783770_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829583_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859224
transcript_85463.known	chr7	-	3132	20	FSM	ENSMUSG00000063550.9	ENSMUST00000211022.2	3132	20	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_10	14.8011753669689	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTATGATGTGCAGTCT	9996	False	NA	NA	False	AGTAAA	-14	NA	101859357	101794534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829634_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859224
transcript_8547.known	chr10	-	3348	10	FSM	ENSMUSG00000055053.19	ENSMUST00000020461.15	3348	10	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_9	5.66557723732532	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAATCCATTA	3912	False	NA	NA	False	AAAAAG	-44	NA	81263007	81234971	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81236906_81239185_81239263_81240657_81240843_81241922_81242049_81243388_81243514_81243939_81244064_81244168_81244244_81245444_81245517_81256100_81256633_81262909
transcript_8548.known	chr10	-	6237	9	FSM	ENSMUSG00000055053.19	ENSMUST00000105321.10	6237	9	0	0	0	0	multi-exon	TRUE	canonical	2	12	junction_1	7.0611171212493	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGTTCTTCCTTTCTG	3898	False	NA	NA	False	NA	NA	NA	81263021	81232019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81236906_81240657_81240843_81241922_81242049_81243388_81243514_81243939_81244064_81244168_81244244_81245444_81245517_81256100_81256633_81262909
transcript_85480.known	chr7	+	1253	8	FSM	ENSMUSG00000030990.19	ENSMUST00000119816.9	1253	8	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_4	67.5063111184156	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCACCACTTGGTGCTAAAA	651	False	NA	NA	False	NA	NA	NA	101872291	101886940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_101872358_101872585_101872698_101875477_101875653_101884868_101884967_101885300_101885554_101885654_101885762_101886328_101886438_101886607
transcript_85481.known	chr7	+	1254	8	FSM	ENSMUSG00000030990.19	ENSMUST00000145352.8	1254	8	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	67.0829519995922	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGACAGGGCTGACCCC	650	False	NA	NA	False	NA	NA	NA	101872290	101886827	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_101872358_101872585_101872698_101875477_101875653_101884868_101885080_101885300_101885554_101885654_101885762_101886328_101886438_101886607
transcript_85485.known	chr7	+	2141	7	FSM	ENSMUSG00000030990.19	ENSMUST00000120879.8	2141	7	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	65.7809918509054	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTAGGTATGTTGCTCC	NA	False	NA	16	True	AATAAA	-23	NA	101859568	101887774	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_101859799_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885750_101886328_101886438_101886607
transcript_85491.known	chr7	+	2034	7	FSM	ENSMUSG00000030990.19	ENSMUST00000156529.8	2034	7	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_5	43.1689188601655	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTAGGTATGTTGCTCC	594	False	NA	16	True	AATAAA	-23	NA	101872234	101887774	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_101872358_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885750_101886328_101886438_101886607
transcript_85493.known	chr7	+	1201	7	FSM	ENSMUSG00000030990.19	ENSMUST00000033292.14	1201	7	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_5	27.0657635317306	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCCTGAGGTTCACTAAGG	635	False	NA	NA	False	NA	NA	NA	101872275	101886970	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_101872358_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885762_101886328_101886438_101886607
transcript_85511.nic	chr7	+	1946	6	NIC	ENSMUSG00000030990.19	novel	2034	7	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	55.9692772867401	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTAGGTATGTTGCTCC	582	False	NA	16	True	AATAAA	-23	NA	101872222	101887774	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_101872358_101875477_101875653_101885300_101885554_101885654_101885762_101886328_101886438_101886607
transcript_85516.known	chr7	+	869	5	FSM	ENSMUSG00000030990.19	ENSMUST00000129340.8	869	5	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_2	71.9357352085874	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAGGTTAGGGTTCAGAGC	616	False	NA	NA	False	AAAAAG	-14	NA	101872256	101886984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_101872358_101875477_101875653_101885654_101885762_101886328_101886438_101886607
transcript_8552.known	chr10	+	401	2	FSM	ENSMUSG00000085327.2	ENSMUST00000156260.2	401	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGGACACAGCAGACATG	NA	False	NA	NA	False	AATAAA	-14	NA	81245408	81247413	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_81245600_81247203
transcript_85521.known	chr7	+	1033	3	FSM	ENSMUSG00000030990.19	ENSMUST00000124619.8	1033	3	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	18	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTCGATGTCTGTTGTG	637	False	NA	NA	False	AGTAAA	-12	NA	101872277	101876318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_101872358_101872585_101872698_101875477
transcript_85523.known	chr7	-	1269	2	FSM	ENSMUSG00000073982.12	ENSMUST00000098230.11	1269	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGGCTCCTCCCTATGTG	6360	False	NA	-2	True	AATAAA	-18	NA	101899330	101888329	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_101889520_101899251
transcript_85524.known	chr7	-	1321	3	FSM	ENSMUSG00000073982.12	ENSMUST00000106923.2	1321	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGGCTCCTCCCTATGTG	6395	False	NA	-2	True	AATAAA	-18	NA	101899295	101888329	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_101889520_101898508_101898596_101899251
transcript_85526.known	chr7	+	3997	19	FSM	ENSMUSG00000030978.11	ENSMUST00000033283.10	3997	19	0	0	0	0	multi-exon	FALSE	canonical	3	773	junction_6	74.8152456899951	495	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGGTGGCTATGAACGGC	NA	False	NA	NA	False	AATAAA	-12	NA	102090901	102118978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_102091251_102092193_102092283_102095756_102095935_102097007_102097109_102098401_102098462_102099242_102099283_102100107_102100271_102103702_102103845_102105677_102105762_102106358_102106521_102106766_102106847_102108595_102108798_102109497_102109648_102109836_102110059_102110813_102110891_102112852_102112989_102114924_102115021_102116084_102116274_102117501
transcript_8553.known	chr10	-	2042	12	FSM	ENSMUSG00000034818.18	ENSMUST00000120508.8	2042	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	2.44273251682626	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCCCCTTCAATAGTCTC	NA	False	NA	NA	False	NA	NA	NA	81318518	81297381	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81298176_81298502_81298606_81300173_81300255_81301800_81301864_81302758_81302906_81302989_81303132_81303818_81303966_81305277_81305358_81306462_81306592_81307142_81307192_81312702_81312786_81318294
transcript_85538.known	chr7	-	2793	8	FSM	ENSMUSG00000030966.14	ENSMUST00000033264.12	2793	8	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	2.61861468283191	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCTTCTTTCATTCTACC	NA	False	NA	NA	False	AATAAA	-16	NA	102214693	102207127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_102208871_102209174_102209276_102209799_102209823_102210994_102211226_102212472_102212569_102212900_102213333_102213478_102213548_102214595
transcript_8554.known	chr10	-	2841	14	FSM	ENSMUSG00000020238.15	ENSMUST00000118498.8	2841	14	0	0	0	0	multi-exon	TRUE	canonical	3	153	junction_4	76.7224306246012	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTCCAGGTGTCCTGAG	NA	False	NA	-30	True	AATAAA	-18	NA	81332160	81322290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81323440_81323513_81323593_81323680_81323735_81324028_81324190_81324261_81324301_81324382_81324471_81325635_81325955_81326060_81326150_81327003_81327108_81327810_81327892_81328661_81328757_81328896_81329042_81329182_81329374_81331913
transcript_85541.known	chr7	-	2301	6	FSM	ENSMUSG00000073968.5	ENSMUST00000210855.2	2301	6	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_2	1.95959179422654	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAATCCACAGATCACGAGT	NA	False	NA	NA	False	ATTAAA	-21	NA	102336477	102326795	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_102328045_102328242_102328344_102329343_102329605_102330869_102330966_102333254_102333719_102336347
transcript_85542.known	chr7	-	703	3	FSM	ENSMUSG00000073940.4	ENSMUST00000098192.4	703	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTGTTTTGATTACTTT	NA	False	NA	2	True	AATAAA	-22	NA	103463203	103461730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_103461992_103462645_103462869_103462984
transcript_85543.known	chr7	-	628	3	FSM	ENSMUSG00000052305.7	ENSMUST00000023934.8	628	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGATGTTTTAAATTATTT	NA	False	NA	-2	True	AATAAA	-19	NA	103477135	103475740	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_103476001_103476654_103476878_103476990
transcript_85544.known	chr7	-	633	3	FSM	ENSMUSG00000052187.5	ENSMUST00000033229.5	633	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGTTTTGTCTTGTCTGC	NA	False	NA	NA	False	AATAAA	-26	NA	103502423	103500955	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_103501210_103501954_103502178_103502267
transcript_85545.known	chr7	-	351	1	FSM	ENSMUSG00000083854.4	ENSMUST00000120890.2	351	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	138	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTAATCTGATGAATTTTAA	NA	False	NA	NA	False	AATGAA	-37	NA	103532211	103531860	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_103531900_103532200
transcript_8555.known	chr10	-	2386	1	FSM	ENSMUSG00000044199.7	ENSMUST00000053646.7	2386	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCCGTTTCTCAGTGTAT	7363	False	NA	NA	False	ATTAAA	-17	NA	81335966	81333580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81333600_81336000
transcript_85550.known	chr7	+	3827	8	FSM	ENSMUSG00000072244.12	ENSMUST00000098180.10	3827	8	0	0	0	0	multi-exon	FALSE	canonical	2	421	junction_3	109.572825470701	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGGAGACTTGAAGGTGCA	NA	False	NA	NA	False	AATAAA	-18	NA	103868001	103884359	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_103868091_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573
transcript_85554.nnic	chr7	+	3606	9	NNC	ENSMUSG00000072244.12	novel	1506	8	NA	NA	-53	-248	intron_retention	TRUE	canonical	0	0	junction_8	276.31221018985	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGAGTCTTCTTACTCT	NA	False	NA	13	True	AATAAA	-14	NA	103868582	103884111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_103868745_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573_103882780_103882825
transcript_85559.nnic	chr7	+	1312	4	NNC	ENSMUSG00000072244.12	novel	1490	3	NA	NA	-4	14	intron_retention	FALSE	canonical	0	0	junction_3	346.935472706701	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGGAGAAGGAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	103867995	103876954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_103868091_103874713_103875188_103876015_103876366_103876561
transcript_8556.known	chr10	-	1962	7	FSM	ENSMUSG00000034792.9	ENSMUST00000043709.8	1962	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	27.6083723211315	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATCAGGGAACTGAGGAAG	5779	False	NA	NA	False	AATAAA	-18	NA	81360059	81338146	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81338940_81343761_81343916_81345119_81345250_81347830_81347960_81348244_81348400_81350070_81350256_81359643
transcript_85560.nnic	chr7	+	1393	4	NNC	ENSMUSG00000072244.12	novel	1506	8	NA	NA	-67	14	intron_retention	FALSE	canonical	0	0	junction_3	336.806901486429	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGGAGAAGGAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	103868568	103876954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_103868745_103874713_103875188_103876015_103876366_103876561
transcript_85561.known	chr7	+	1490	3	FSM	ENSMUSG00000072244.12	ENSMUST00000144538.2	1490	3	0	0	0	0	multi-exon	FALSE	canonical	3	703	junction_1	31	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	103867999	103876940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_103868091_103874713_103875188_103876015
transcript_85565.known	chr7	+	536	2	FSM	ENSMUSG00000072244.12	ENSMUST00000128493.2	536	2	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTCATCACACATTCCTC	NA	False	NA	NA	False	NA	NA	NA	103868635	103875140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_103868745_103874713
transcript_85566.known	chr7	+	2590	8	FSM	ENSMUSG00000056144.15	ENSMUST00000060315.12	2590	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	5.3642809587196	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTGAATCTGTTCATT	NA	False	NA	7	True	ATTAAA	-15	NA	103893665	103911441	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_103893814_103896737_103897358_103897893_103897990_103898601_103898833_103908619_103908643_103909324_103909426_103909684_103909712_103910097
transcript_85567.known	chr7	+	2578	8	FSM	ENSMUSG00000056144.15	ENSMUST00000106849.9	2578	8	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_3	5.31843156256751	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTGAATCTGTTCATT	NA	False	NA	7	True	ATTAAA	-15	NA	103893663	103911441	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_103893800_103896737_103897358_103897893_103897990_103898601_103898833_103908619_103908643_103909324_103909426_103909684_103909712_103910097
transcript_85570.known	chr7	-	1407	2	FSM	ENSMUSG00000062369.3	ENSMUST00000076501.2	1407	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGGGATGCTTCAGACAA	NA	False	NA	NA	False	NA	NA	NA	104491711	104489518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_104490898_104491683
transcript_85572.known	chr7	-	3521	13	FSM	ENSMUSG00000044465.20	ENSMUST00000122327.7	3521	13	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_12	109.388038905337	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTGTGCTCATTCTTCT	NA	False	NA	-12	True	TATAAA	-12	NA	105049239	105027818	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_105028337_105030286_105030450_105030605_105030785_105032987_105033780_105034194_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105038145_105038460_105039100_105039227_105039560_105040783_105040875_105049090
transcript_85575.known	chr7	-	10853	12	FSM	ENSMUSG00000044465.20	ENSMUST00000179474.9	10853	12	0	0	0	0	multi-exon	TRUE	canonical	3	88	junction_4	97.1164419950871	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTTGTTCACATCTCAG	NA	False	NA	0	True	AATAAA	-16	NA	105049261	105020417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_105028337_105030286_105030450_105030605_105030785_105032987_105033780_105034194_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105038145_105038460_105039100_105039227_105039560_105049090
transcript_85580.known	chr7	+	2484	6	FSM	ENSMUSG00000030897.6	ENSMUST00000033187.6	2484	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2.13541565040626	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGGCACTGGGTTTATCT	NA	False	NA	NA	False	NA	NA	NA	105053774	105057949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_105053961_105054095_105054198_105054376_105054484_105054688_105055335_105056007_105056358_105056856
transcript_85581.known	chr7	+	2573	5	FSM	ENSMUSG00000030898.16	ENSMUST00000033189.6	2573	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	1.6583123951777	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAGGCTCAGATTATTCG	NA	False	NA	NA	False	GATAAA	-15	NA	105074937	105085546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_105075383_105082789_105083042_105083201_105083452_105083726_105083903_105084096
transcript_85582.known	chr7	-	1662	2	FSM	ENSMUSG00000037060.4	ENSMUST00000047040.4	1662	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTTTTAGATCTTGTTA	NA	False	NA	NA	False	AATAAA	-18	NA	105131507	105129289	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_105130427_105130982
transcript_85583.known	chr7	+	2412	6	FSM	ENSMUSG00000037049.10	ENSMUST00000046983.10	2412	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	5.53534100123922	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTTCCTATTTCTTCTTCC	NA	False	NA	11	True	AATAAA	-21	NA	105203566	105207596	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_105204045_105204428_105205202_105205713_105205886_105206124_105206202_105206556_105206703_105206830
transcript_85587.known	chr7	-	2878	14	FSM	ENSMUSG00000037032.17	ENSMUST00000189378.7	2878	14	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_6	14.1718113410527	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAAGTCTGTCTGCGCTGCT	NA	False	NA	-42	True	NA	NA	NA	105230698	105207709	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_105208258_105208338_105208516_105208649_105208766_105214178_105214263_105214507_105214593_105214739_105214855_105215257_105215386_105215754_105215905_105216289_105216354_105216460_105216547_105216634_105216692_105216784_105216961_105222888_105223624_105230341
transcript_85592.known	chr7	-	2712	14	FSM	ENSMUSG00000037032.17	ENSMUST00000191011.7	2712	14	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_13	40.0285401141316	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTCTTCCTGTGCTCAT	NA	False	NA	-22	True	AATAAA	-17	NA	105230860	105207689	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_105208258_105208338_105208516_105208649_105208766_105214178_105214263_105214507_105214593_105214739_105214855_105215257_105215386_105215754_105215905_105216289_105216354_105216460_105216547_105216634_105216692_105216784_105216961_105222888_105223624_105230689
transcript_85605.known	chr7	-	2254	8	FSM	ENSMUSG00000030881.16	ENSMUST00000084782.10	2254	8	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_7	43.718953999101	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGTAAGTAGCGAACAGC	NA	False	NA	NA	False	NA	NA	NA	105289558	105284325	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_105285601_105286017_105286193_105286327_105286486_105287025_105287248_105287415_105287535_105288215_105288313_105288531_105288633_105289451
transcript_85606.known	chr7	-	3275	8	FSM	ENSMUSG00000030881.16	ENSMUST00000131446.8	3275	8	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_3	9.16515138991168	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTTTTATTGTATTGTAC	NA	False	NA	NA	False	NA	NA	NA	105289623	105283409	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_105285601_105286017_105286193_105286327_105286486_105287025_105287248_105287415_105287535_105288215_105288313_105288531_105288673_105289451
transcript_85610.known	chr7	-	938	7	FSM	ENSMUSG00000030881.16	ENSMUST00000210911.2	938	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	48.6312656631513	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCAACTTGGCTATCAAGA	NA	False	NA	NA	False	NA	NA	NA	105289533	105285434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_105285601_105286017_105286193_105286327_105286486_105287415_105287535_105288215_105288313_105288531_105288673_105289451
transcript_85614.known	chr7	+	529	4	FSM	ENSMUSG00000089847.9	ENSMUST00000210350.2	529	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_3	163.903087897154	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTTTCTTGTCTTCAGAG	NA	False	NA	NA	False	AATAAA	-17	NA	105289757	105291056	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_105289830_105289968_105290065_105290234_105290368_105290828
transcript_85616.known	chr7	+	694	4	FSM	ENSMUSG00000089847.9	ENSMUST00000058333.10	694	4	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_3	126.499011853848	846	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAAGTGCTTTCTTGTCT	NA	False	NA	NA	False	AATAAA	-11	NA	105289654	105291050	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_105289830_105289968_105290065_105290234_105290436_105290828
transcript_85618.known	chr7	+	494	4	FSM	ENSMUSG00000089847.9	ENSMUST00000106784.2	494	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	50.2062413118794	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAATAAAGACTTTAAACAA	NA	False	NA	NA	False	NA	NA	NA	105289796	105291032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_105289830_105290019_105290076_105290234_105290436_105290828
transcript_85619.known	chr7	+	3273	3	FSM	ENSMUSG00000089847.9	ENSMUST00000106783.8	3273	3	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_1	22.5	2120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTGTTTCCTTTCTTCCT	NA	False	NA	NA	False	AATAAA	-17	NA	105289262	105292844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_105289830_105289968_105290065_105290234
transcript_85623.known	chr7	+	1083	2	FSM	ENSMUSG00000089847.9	ENSMUST00000151193.2	1083	2	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_1	0	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTTACTCTCTTAGTAC	NA	False	NA	NA	False	NA	NA	NA	105289770	105290992	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_105289830_105289968
transcript_85625.known	chr7	+	373	2	FSM	ENSMUSG00000089847.9	ENSMUST00000209588.2	373	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTATTTGTCTATGGGTA	NA	False	NA	7	True	AATAAA	-16	NA	105289777	105290555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_105289830_105290234
transcript_85626.known	chr7	-	1772	8	FSM	ENSMUSG00000030881.16	ENSMUST00000033171.15	1772	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	44.3170396123207	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCCAGTGAGGTCAATTTG	NA	False	NA	NA	False	AATAAA	-16	NA	105289521	105284827	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_105285601_105286017_105286193_105286327_105286486_105287025_105287248_105287415_105287552_105288215_105288313_105288531_105288673_105289451
transcript_85627.known	chr7	-	1354	4	FSM	ENSMUSG00000030881.16	ENSMUST00000127853.8	1354	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	45.6386775541195	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGGCCCAGTGAGGTCAAT	NA	False	NA	NA	False	AATAAA	-13	NA	105287109	105284830	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_105285601_105286017_105286193_105286327_105286486_105286858
transcript_85629.known	chr7	+	1749	13	FSM	ENSMUSG00000030890.17	ENSMUST00000163389.9	1749	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	93.7171794401764	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCTCGTGTGGGGACAGA	NA	False	NA	25	True	AATAAA	-15	NA	105385931	105392129	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_105386014_105386307_105386445_105389383_105389550_105389719_105389816_105389977_105390075_105390166_105390251_105390354_105390441_105390580_105390691_105390786_105390915_105390993_105391116_105391203_105391304_105391413_105391545_105391719
transcript_8563.known	chr10	-	1046	2	FSM	ENSMUSG00000034792.9	ENSMUST00000147908.2	1046	2	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	0	884	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAACTGAGGAAGAGAGAAA	6420	False	NA	NA	False	AATAAA	-25	NA	81344007	81338139	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81338940_81343761
transcript_85631.known	chr7	-	3053	7	FSM	ENSMUSG00000030888.15	ENSMUST00000033179.14	3053	7	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_4	21.202725191719	171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGGCATGTTTGGAGTCT	9803	False	NA	NA	False	AATAAA	-17	NA	105385988	105380936	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_105382351_105382558_105382656_105382738_105382846_105382974_105383105_105383206_105383661_105383896_105384264_105385504
transcript_85634.known	chr7	-	4281	5	FSM	ENSMUSG00000043866.12	ENSMUST00000141116.2	4281	5	0	0	0	0	multi-exon	FALSE	canonical	3	1140	junction_4	81.1861287413065	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCATCCCCTAAGGACAT	6439	False	NA	-12	True	AATAAA	-20	NA	105393568	105388599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_105392271_105392432_105392548_105392634_105392700_105393036_105393192_105393293
transcript_85637.known	chr7	+	1795	13	FSM	ENSMUSG00000030890.17	ENSMUST00000033182.10	1795	13	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_1	33.4937805171846	909	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCGTGTGGGGACAGAGGG	NA	False	NA	28	True	AATAAA	-18	NA	105385798	105392132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_105385924_105386307_105386445_105389383_105389550_105389719_105389816_105389977_105390075_105390166_105390251_105390354_105390441_105390580_105390691_105390786_105390915_105390993_105391116_105391203_105391304_105391413_105391545_105391719
transcript_85638.known	chr7	-	601	4	FSM	ENSMUSG00000043866.12	ENSMUST00000131683.8	601	4	0	0	0	0	multi-exon	FALSE	canonical	3	1257	junction_1	50.2084543567006	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGCTGATCCCTCCCAT	6718	False	NA	-30	True	AATAAA	-15	NA	105393289	105392102	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_105392271_105392432_105392548_105392634_105392700_105393036
transcript_8564.known	chr10	+	294	1	FSM	ENSMUSG00000082828.2	ENSMUST00000119187.2	294	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTCGCCTAGCCCACAATA	NA	False	NA	NA	False	NA	NA	NA	81340306	81340600	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_81340300_81340600
transcript_85640.known	chr7	-	3558	13	FSM	ENSMUSG00000030894.6	ENSMUST00000033184.6	3558	13	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_12	25.3212690571912	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTTGTATTGTAAATGT	NA	False	NA	NA	False	NA	NA	NA	105401442	105394017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_105395980_105396149_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089_105398279_105398431_105398631_105398743_105398920_105399066_105399195_105399386_105399538_105400796_105400937_105401188_105401261_105401377
transcript_85646.nic	chr7	-	2290	12	NIC	ENSMUSG00000030894.6	novel	3687	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_10	89.1434909764649	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTGAGTGATTTTTTTT	NA	False	NA	4	True	AATAAA	-30	NA	105401422	105395125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_105395980_105396149_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089_105398279_105398431_105398631_105398743_105398920_105399066_105399195_105399386_105399538_105401188_105401261_105401377
transcript_8565.known	chr10	-	3414	7	FSM	ENSMUSG00000034781.6	ENSMUST00000043604.6	3414	7	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_6	26.2339898266013	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCTTTGTGATTATTAGT	4223	False	NA	0	True	AATAAA	-19	NA	81381024	81364557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81366820_81366925_81367080_81367155_81367286_81368229_81368359_81369085_81369241_81370913_81371099_81380625
transcript_85654.known	chr7	-	3687	12	FSM	ENSMUSG00000030894.6	ENSMUST00000210840.2	3687	12	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_11	25.7614613824989	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTGAGTGATTTTTTTT	NA	False	NA	4	True	AATAAA	-30	NA	105401420	105395125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_105395980_105396149_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089_105398279_105398431_105398631_105398743_105398920_105399066_105399195_105399386_105400937_105401188_105401261_105401377
transcript_85655.known	chr7	-	459	3	FSM	ENSMUSG00000030879.11	ENSMUST00000176498.2	459	3	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_2	1150.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCCCTCATAATGAGACCC	NA	False	NA	-113	True	NA	NA	NA	105460206	105458971	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_105459352_105459656_105459726_105460196
transcript_85662.known	chr7	-	869	3	FSM	ENSMUSG00000030879.11	ENSMUST00000176158.2	869	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1127	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAGGATTTATGGAAAGTAA	NA	False	NA	-5	True	GATAAA	-43	NA	105460165	105458863	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_105459352_105459495_105459726_105460014
transcript_85663.known	chr7	-	1028	2	FSM	ENSMUSG00000030879.11	ENSMUST00000033170.7	1028	2	0	0	0	0	multi-exon	FALSE	canonical	3	2255	junction_1	0	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATATTGACTTTCTTGTCCT	NA	False	NA	-28	True	GATAAA	-20	NA	105460203	105458886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_105459726_105460014
transcript_85665.known	chr7	+	3272	11	FSM	ENSMUSG00000016626.11	ENSMUST00000084763.5	3272	11	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_7	2.19089023002066	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATGCCACAAGTGTCAT	NA	False	NA	NA	False	AGTAAA	-11	NA	106766196	106797300	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_106766289_106780365_106780453_106780877_106782460_106783934_106784109_106785754_106785920_106789229_106789401_106790265_106790437_106791652_106791824_106795248_106795420_106796353_106796525_106796983
transcript_8567.known	chr10	+	1411	7	FSM	ENSMUSG00000054452.11	ENSMUST00000002518.9	1411	7	0	0	0	0	multi-exon	FALSE	canonical	3	2772	junction_6	274.064925397858	163	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACTGTGTCCCTGCTTCT	57	False	NA	14	True	AATAAA	-16	NA	81395327	81402196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_81395503_81397052_81397151_81399928_81399993_81400506_81400552_81400681_81400745_81401125_81401201_81401305
transcript_85680.nnic	chr7	+	1503	3	NNC	ENSMUSG00000051041.9	novel	1685	3	NA	NA	-13841	0	intron_retention	FALSE	canonical	0	0	junction_1	6	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACTGCCTTAAGTATCTT	NA	False	NA	NA	False	AATACA	-24	NA	107152811	107190301	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_107153079_107170243_107170533_107189354
transcript_85681.known	chr7	+	1685	3	FSM	ENSMUSG00000051041.9	ENSMUST00000120990.2	1685	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	2.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACTGCCTTAAGTATCTT	NA	False	NA	NA	False	AATACA	-24	NA	107166652	107190301	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_107167102_107170243_107170533_107189354
transcript_85684.nic	chr7	+	969	6	ISM	ENSMUSG00000036528.17	ENSMUST00000040056.15	3310	25	-212	47195	-153	0	5prime_fragment	FALSE	canonical	3	32	junction_3	5.49181208709839	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAGAGGTGAGTGTAATT	7092	False	NA	NA	False	AAAAAG	-31	NA	107194260	107296897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_107194587_107236420_107236518_107252224_107252440_107280968_107281062_107285066_107285181_107296773
transcript_85685.known	chr7	+	3310	25	FSM	ENSMUSG00000036528.17	ENSMUST00000040056.15	3310	25	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_15	13.6274207839276	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGTGTGAAACATTTTTA	7304	False	NA	NA	False	AATAAA	-16	NA	107194472	107344092	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_107194587_107236420_107236518_107252224_107252440_107280968_107281062_107285066_107285181_107296773_107296906_107307986_107308080_107313792_107313905_107315842_107315905_107316911_107316988_107318414_107318519_107320537_107320606_107321310_107321369_107322143_107322186_107326850_107326993_107327922_107327956_107328345_107328473_107329027_107329157_107337047_107337199_107337481_107337594_107337807_107337897_107338393_107338517_107339714_107339841_107342112_107342302_107343383
transcript_85688.nnic	chr7	-	1232	10	NNC	ENSMUSG00000048065.9	novel	2772	9	NA	NA	-47	9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	16.4113781667882	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGGTGGACTCACAAAGGTT	NA	False	NA	NA	False	AATAAA	-21	NA	107357286	107347652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_107347963_107350373_107350474_107351537_107351624_107352422_107352507_107353052_107353183_107353910_107354018_107356117_107356191_107356391_107356519_107356818_107356912_107357164
transcript_85689.nnic	chr7	-	1359	10	NNC	ENSMUSG00000048065.9	novel	1178	9	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	9.77651506998175	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCACAATGTGTGGATAT	NA	False	NA	-5	True	AATAAA	-19	NA	107357259	107349171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_107349604_107350373_107350474_107351537_107351624_107352422_107352507_107353052_107353183_107353910_107354018_107356117_107356191_107356391_107356519_107356786_107356912_107357164
transcript_8569.known	chr10	+	950	5	FSM	ENSMUSG00000034771.16	ENSMUST00000139135.2	950	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0.82915619758885	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGTGGGGCTGGGGCAC	3257	False	NA	NA	False	NA	NA	NA	81423259	81426257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_81423635_81423707_81423856_81424642_81424794_81425253_81425331_81426058
transcript_85691.nnic	chr7	-	1413	10	NNC	ENSMUSG00000048065.9	novel	1178	9	NA	NA	-106	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_8	11.9484489411289	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCACAATGTGTGGATAT	NA	False	NA	-5	True	AATAAA	-19	NA	107357345	107349171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_107349604_107350373_107350474_107351537_107351624_107352422_107352507_107353052_107353183_107353910_107354018_107356117_107356191_107356391_107356519_107356818_107356912_107357164
transcript_85694.nnic	chr7	-	1214	9	NNC	ENSMUSG00000048065.9	novel	2772	9	NA	NA	-122	9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	17.7411949992102	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGGTGGACTCACAAAGGTT	NA	False	NA	NA	False	AATAAA	-21	NA	107357361	107347652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_107347963_107350373_107350474_107351537_107351624_107352422_107352507_107353052_107353183_107353910_107354018_107356117_107356191_107356391_107356519_107357164
transcript_85697.known	chr7	-	1178	9	FSM	ENSMUSG00000048065.9	ENSMUST00000208217.2	1178	9	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_8	13.026415470113	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCACAATGTGTGGATAT	NA	False	NA	-5	True	AATAAA	-19	NA	107357203	107349171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_107349604_107350373_107350474_107351537_107351624_107352422_107352507_107353052_107353183_107353910_107354018_107356117_107356191_107356391_107356519_107357164
transcript_85701.known	chr7	-	2772	9	FSM	ENSMUSG00000048065.9	ENSMUST00000052438.8	2772	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	17.7301825991725	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACAAATCGGTGGACTC	NA	False	NA	NA	False	AATAAA	-12	NA	107357239	107347661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_107349604_107350373_107350474_107351537_107351624_107352422_107352555_107353052_107353183_107353910_107354018_107356117_107356191_107356391_107356519_107357164
transcript_85714.nnic	chr7	-	1176	8	NNC	ENSMUSG00000048065.9	novel	1178	9	NA	NA	-46	-2011	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_6	11.8528391501095	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATGCTTTCATTTGTCTT	NA	False	NA	NA	False	ATTAAA	-42	NA	107357285	107351182	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_107351624_107352422_107352507_107353052_107353183_107353910_107354018_107356117_107356191_107356391_107356519_107356818_107356912_107357164
transcript_85726.known	chr7	+	602	3	FSM	ENSMUSG00000109402.2	ENSMUST00000208448.2	602	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGTTTAGTGACCAAAA	9349	False	NA	NA	False	NA	NA	NA	107380145	107385653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_107380223_107381501_107381570_107385196
transcript_8573.known	chr10	-	1961	14	FSM	ENSMUSG00000034758.13	ENSMUST00000142948.8	1961	14	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_8	19.8357158000858	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTTGTCCTTTACCCAG	NA	False	NA	-14	True	NA	NA	NA	81436709	81426737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431210_81431313_81431390_81431678_81432090_81434444_81434491_81434910_81434973_81435868_81435950_81436631
transcript_85731.known	chr7	+	2514	8	FSM	ENSMUSG00000031029.7	ENSMUST00000033342.7	2514	8	0	0	0	0	multi-exon	FALSE	canonical	3	2245	junction_2	107.423632105296	205	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTCTGCAGAGAGTACTA	NA	False	NA	NA	False	TATAAA	-14	NA	108533623	108542158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_108534015_108536952_108537024_108537242_108537323_108537615_108537754_108539396_108539489_108539850_108539988_108540100_108540215_108540667
transcript_85732.known	chr7	-	1633	6	FSM	ENSMUSG00000048330.15	ENSMUST00000120876.2	1633	6	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	14.7837748900611	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGCCTTATTCTTTGGGC	NA	False	NA	NA	False	NA	NA	NA	108682529	108637154	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_108638091_108647157_108647301_108653571_108653666_108655950_108656024_108656989_108657217_108682369
transcript_85734.known	chr7	-	3258	5	FSM	ENSMUSG00000048330.15	ENSMUST00000133876.2	3258	5	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	4.55521678957215	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	108682518	108644588	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_108647304_108653571_108653666_108655950_108656024_108656989_108657217_108682369
transcript_85736.known	chr7	-	469	2	FSM	ENSMUSG00000048330.15	ENSMUST00000129629.2	469	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACTGAAGGAAAGGCCATC	NA	False	NA	NA	False	NA	NA	NA	108682512	108679950	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_108680277_108682369
transcript_85737.known	chr7	-	683	2	FSM	ENSMUSG00000048330.15	ENSMUST00000137385.2	683	2	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAACAAAAGA	NA	False	NA	NA	False	NA	NA	NA	108682529	108656693	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_108657217_108682369
transcript_85741.known	chr7	-	912	4	FSM	ENSMUSG00000036111.9	ENSMUST00000207178.2	912	4	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	6.37704215656966	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTACAGTCTGTCTTCT	NA	False	NA	-107	True	NA	NA	NA	108774414	108737881	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_108738184_108739788_108739915_108742662_108742877_108774144
transcript_85747.nnic	chr7	-	2223	13	NNC	ENSMUSG00000031027.16	novel	2295	13	NA	NA	51198	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_11	19.7188573029304	38	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCAGTCCCTCACGTGT	NA	False	NA	-14	True	AATAAA	-26	NA	108986826	108878429	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_108879064_108911477_108911628_108920003_108920090_108920667_108920781_108924887_108924964_108926798_108926887_108928739_108928829_108930675_108930815_108935247_108935353_108937526_108937641_108939575_108939687_108940495_108940847_108986659
transcript_8575.known	chr10	-	2015	14	FSM	ENSMUSG00000034758.13	ENSMUST00000072020.9	2015	14	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_10	15.2183321404185	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGATTTGTCCTTTACCCA	NA	False	NA	-15	True	NA	NA	NA	81436734	81426738	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431240_81431313_81431390_81431678_81432090_81434444_81434491_81434910_81434973_81435868_81435950_81436631
transcript_85754.nnic	chr7	-	1780	11	NNC	ENSMUSG00000031027.16	novel	2295	13	NA	NA	51152	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_6	17.1642069435206	31	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCAGTCCCTCACGTGT	NA	False	NA	-14	True	AATAAA	-26	NA	108986872	108878429	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_108879064_108911477_108911628_108920003_108920090_108920667_108920781_108924887_108924964_108926798_108926860_108928739_108928829_108930675_108930815_108935247_108935353_108937526_108937641_108986659
transcript_85756.nnic	chr7	-	1807	11	NNC	ENSMUSG00000031027.16	novel	2295	13	NA	NA	51152	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_10	9.45568612000208	102	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCAGTCCCTCACGTGT	NA	False	NA	-14	True	AATAAA	-26	NA	108986872	108878429	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_108879064_108911477_108911628_108920003_108920090_108920667_108920781_108924887_108924964_108926798_108926887_108928739_108928829_108930675_108930815_108935247_108935353_108937526_108937641_108986659
transcript_85759.nnic	chr7	-	1522	9	NNC	ENSMUSG00000031027.16	novel	2295	13	NA	NA	51209	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_6	19.1861766644634	26	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCAGTCCCTCACGTGT	NA	False	NA	-14	True	AATAAA	-26	NA	108986815	108878429	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_108879064_108911477_108911628_108920003_108920090_108920667_108920781_108924887_108924964_108926798_108926887_108935247_108935353_108937526_108937641_108986659
transcript_85765.known	chr7	+	1808	2	FSM	ENSMUSG00000085407.2	ENSMUST00000143715.2	1808	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAAGAGTCCTGCCTCCT	NA	False	NA	NA	False	NA	NA	NA	109037824	109044100	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_109039390_109043857
transcript_85766.nnic	chr7	+	1449	2	Antisense	novelGene_ENSMUSG00000031026.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCAAATGGTTTATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	109046523	109049625	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr7_+_109046656_109048308
transcript_85768.known	chr7	-	9250	20	FSM	ENSMUSG00000031026.16	ENSMUST00000106739.8	9250	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	2.34668387469557	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAACCGTGTCCTAGAGTG	NA	False	NA	-3	True	AATAAA	-21	NA	109092945	109048212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_109053242_109054208_109054453_109054838_109054992_109055268_109055344_109056252_109056380_109056754_109057042_109057317_109057493_109057947_109058009_109059364_109059558_109059699_109060222_109071440_109071603_109074258_109075167_109076844_109076963_109080132_109080280_109081089_109081205_109082238_109082356_109082844_109082978_109083784_109083933_109085253_109085358_109092513
transcript_85775.known	chr7	+	1158	5	FSM	ENSMUSG00000046364.15	ENSMUST00000143107.2	1158	5	0	0	0	0	multi-exon	FALSE	canonical	3	7451	junction_1	3855.66202972978	15151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATCTTTAAATCTGGAAG	NA	False	NA	20	True	AATAAA	-24	NA	109118353	109121574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_109118430_109118791_109118856_109119124_109119201_109119674_109119850_109120807
transcript_8578.nic	chr10	-	1763	11	NIC	ENSMUSG00000034758.13	novel	1961	14	NA	NA	3	0	combination_of_known_junctions	TRUE	canonical	2	14	junction_8	22.2405035914208	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTTGTCCTTTACCCAG	NA	False	NA	-14	True	NA	NA	NA	81433198	81426737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431210_81431313_81431390_81431678_81432090_81433129
transcript_85786.known	chr7	+	760	4	FSM	ENSMUSG00000046364.15	ENSMUST00000053298.8	760	4	0	0	0	0	multi-exon	FALSE	canonical	3	7451	junction_1	4009.72894622844	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGTCTTTGCATCCTT	NA	False	NA	2	True	ATTAAA	-14	NA	109118419	109120973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_109118430_109118791_109119201_109119674_109119850_109120807
transcript_85787.known	chr7	+	350	3	FSM	ENSMUSG00000046364.15	ENSMUST00000149143.8	350	3	0	0	0	0	multi-exon	FALSE	canonical	3	7451	junction_1	4486.5	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAACTGCTGACCTTATT	NA	False	NA	NA	False	NA	NA	NA	109118405	109119386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_109118430_109118791_109118856_109119124
transcript_85788.known	chr7	+	120	1	FSM	ENSMUSG00002074947.1	ENSMUST00020183780.1	120	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTTCAGTGTCCCTTCTA	NA	False	NA	NA	False	NA	NA	NA	109120455	109120575	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_109120500_109120600
transcript_85789.known	chr7	+	526	4	FSM	ENSMUSG00000046364.15	ENSMUST00000156921.2	526	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	7943.43973911107	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAAGACTGGAGTTGC	NA	False	NA	NA	False	GATAAA	-43	NA	109118426	109119804	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_109118683_109118791_109118856_109119124_109119201_109119674
transcript_8579.nic	chr10	-	1861	11	NIC	ENSMUSG00000034758.13	novel	1855	11	NA	NA	-65	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_10	15.7445228571716	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTTGTCCTTTACCCAG	NA	False	NA	-14	True	NA	NA	NA	81433266	81426737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431240_81431313_81431390_81431678_81432090_81433129
transcript_85799.known	chr7	+	1028	6	FSM	ENSMUSG00000031023.6	ENSMUST00000033335.6	1028	6	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_1	91.1249691357972	1338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTTTATTGCTATTAAA	NA	False	NA	NA	False	AATAAA	-25	NA	109302896	109311396	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_109302984_109303152_109303378_109304157_109304239_109306604_109306719_109308147_109308229_109310956
transcript_85819.known	chr7	+	645	4	FSM	ENSMUSG00000031023.6	ENSMUST00000143581.2	645	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	189.467675343315	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGCATCTACCAAACATC	NA	False	NA	NA	False	NA	NA	NA	109302958	109308180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_109303378_109304159_109304239_109306604_109306719_109308147
transcript_85821.known	chr7	-	1771	5	FSM	ENSMUSG00000031021.14	ENSMUST00000118571.2	1771	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	51.1150662720885	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCAATGTTTCTGTTCTCC	NA	False	NA	0	True	AATAAA	-17	NA	109352082	109335042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_109336199_109342753_109342889_109344516_109344626_109349219_109349312_109351803
transcript_85823.known	chr7	+	2959	1	FSM	ENSMUSG00000109147.2	ENSMUST00000207761.2	2959	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	109351526	109354485	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_109351500_109354500
transcript_85824.known	chr7	-	1703	5	FSM	ENSMUSG00000031021.14	ENSMUST00000033333.13	1703	5	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_4	15.7698287879102	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATGTTTCTGTTCTCCAG	NA	False	NA	2	True	AATAAA	-19	NA	109351486	109335040	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_109336199_109342753_109342889_109344516_109344626_109349219_109349312_109351277
transcript_85827.known	chr7	-	3840	7	FSM	ENSMUSG00000047554.15	ENSMUST00000094097.12	3840	7	0	0	0	0	multi-exon	TRUE	canonical	3	346	junction_6	24.644133852366	422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGATAATTTTCCCACCAA	NA	False	NA	NA	False	AATAAA	-25	NA	109585658	109571393	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_109574159_109575801_109575941_109577916_109578022_109578595_109578690_109580195_109580325_109581862_109581981_109585168
transcript_85848.known	chr7	-	884	1	FSM	ENSMUSG00000047554.15	ENSMUST00000207300.2	884	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAATTGTTTGA	NA	False	NA	NA	False	NA	NA	NA	109585494	109584610	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_109584600_109585500
transcript_85849.known	chr7	-	815	6	FSM	ENSMUSG00000047554.15	ENSMUST00000135565.2	815	6	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_3	150.388829372397	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAATATTACATCTCCTG	NA	False	NA	NA	False	NA	NA	NA	109585456	109575866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_109575941_109577916_109578022_109578595_109578697_109580195_109580325_109581862_109581981_109585168
transcript_85850.known	chr7	-	1544	3	FSM	ENSMUSG00000047554.15	ENSMUST00000151587.2	1544	3	0	0	0	0	multi-exon	FALSE	canonical	3	346	junction_2	30	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CCAAAAAAAAAAAAAAACCA	NA	False	NA	NA	False	NA	NA	NA	109585466	109579196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_109580325_109581862_109581981_109585168
transcript_85851.known	chr7	-	617	3	FSM	ENSMUSG00000101585.7	ENSMUST00000191157.7	617	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTTCCTTCCATACAGCT	3374	False	NA	NA	False	NA	NA	NA	109605853	109597582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_109597981_109602792_109602923_109605764
transcript_85854.known	chr7	+	4763	25	FSM	ENSMUSG00000066232.5	ENSMUST00000084731.5	4763	25	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	191.489515052391	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTTTGTGTTGTGTTTTTC	7198	False	NA	NA	False	AAGAAA	-2	NA	109617480	109655816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_109617716_109626277_109626360_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802_109648901_109649986_109650083_109650219_109650441_109650528_109650735_109651917_109652125_109653206_109653324_109654223
transcript_85859.known	chr7	+	184	1	FSM	ENSMUSG00000064451.3	ENSMUST00000082517.3	184	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTTTGAAAGAGCTTAGT	NA	False	NA	NA	False	NA	NA	NA	109645570	109645754	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_109645600_109645800
transcript_85860.known	chr7	+	1883	8	FSM	ENSMUSG00000066232.5	ENSMUST00000208951.2	1883	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	376.224422820383	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTATGTCTTGATCTGATT	7239	False	NA	21	True	ATTAAA	-16	NA	109617521	109655322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_109617716_109626277_109626356_109642035_109642093_109643615_109643693_109650680_109650735_109651917_109652125_109653206_109653324_109654223
transcript_85862.known	chr7	+	3003	16	FSM	ENSMUSG00000061079.15	ENSMUST00000084727.11	3003	16	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_4	55.3423285861133	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAATACTTTTTGTTTG	NA	False	NA	12	True	AATACA	-10	NA	109660916	109694594	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_109660983_109668690_109668810_109669684_109669778_109670578_109670663_109671325_109671410_109673274_109673472_109674847_109674923_109676263_109676384_109679474_109679551_109680998_109681125_109682397_109682578_109685319_109685548_109687934_109688084_109690971_109691134_109692276_109692424_109693497
transcript_85864.known	chr7	+	2631	16	FSM	ENSMUSG00000061079.15	ENSMUST00000211798.2	2631	16	0	0	0	0	multi-exon	TRUE	canonical	3	74	junction_4	56.3191698171137	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGGCAGCTTGTGCCTGT	NA	False	NA	NA	False	ATTAAA	-27	NA	109660916	109694225	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_109660983_109668690_109668810_109669684_109669778_109670578_109670663_109671328_109671410_109673274_109673472_109674847_109674923_109676263_109676384_109679474_109679551_109680998_109681125_109682397_109682578_109685319_109685548_109687934_109688084_109690971_109691134_109692276_109692424_109693497
transcript_85871.known	chr7	+	4027	12	FSM	ENSMUSG00000031015.9	ENSMUST00000033325.9	4027	12	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_6	36.1790771003727	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAAACTGGTTACATTAA	NA	False	NA	77	True	ATTAAA	-20	NA	109820917	109882713	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_109821117_109842590_109842732_109854941_109855116_109863086_109863315_109865042_109865190_109866988_109867098_109869106_109869289_109872466_109872575_109873841_109874009_109878386_109878586_109879773_109879871_109880437
transcript_85877.known	chr7	+	1163	5	FSM	ENSMUSG00000031015.9	ENSMUST00000210743.2	1163	5	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_3	17.753520777581	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATGCAGTAAGA	NA	False	NA	NA	False	ATTAAA	-6	NA	109820938	109865484	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_109821117_109842590_109842732_109854941_109855116_109863086_109863315_109865042
transcript_85880.known	chr7	+	1670	4	FSM	ENSMUSG00000031015.9	ENSMUST00000210513.2	1670	4	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_3	8.83176086632785	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTAAAAAAAAAATATACAC	NA	False	NA	NA	False	TTTAAA	-11	NA	109820961	109864286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_109821117_109842590_109842732_109854941_109855116_109863086
transcript_85881.known	chr7	+	1390	4	FSM	ENSMUSG00000030790.16	ENSMUST00000033054.10	1390	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.24721912892465	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTCTCGGTTCATGCAT	5113	False	NA	NA	False	AATAAA	-16	NA	110226867	110229027	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_110227029_110227463_110227584_110227731_110227882_110228068
transcript_85883.known	chr7	+	3489	15	FSM	ENSMUSG00000005686.18	ENSMUST00000170374.8	3489	15	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	9.21539306745812	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGTGAACTTTAGCTTTAT	NA	False	NA	NA	False	NA	NA	NA	110367412	110411126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_110367587_110377005_110377232_110387816_110388022_110390394_110390555_110392846_110393067_110394885_110395016_110399849_110400045_110401638_110401771_110402287_110402452_110402933_110403061_110404031_110404196_110405170_110405292_110406986_110407161_110409002_110409114_110409940
transcript_85884.known	chr7	-	859	7	FSM	ENSMUSG00000030788.17	ENSMUST00000177462.8	859	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	52.3113010947178	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAATTGAAGTTACTGCT	NA	False	NA	NA	False	NA	NA	NA	110443557	110414789	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_110414998_110415145_110415192_110420460_110420569_110424423_110424606_110432943_110433053_110436283_110436478_110443545
transcript_85886.known	chr7	-	4032	6	FSM	ENSMUSG00000030788.17	ENSMUST00000177236.8	4032	6	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_3	5.45527267879434	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGTAGGTGTTGGGAGTTT	NA	False	NA	0	True	ATTAAA	-22	NA	110443664	110412737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_110416058_110420460_110420569_110424423_110424606_110432943_110433053_110436283_110436478_110443545
transcript_85892.known	chr7	-	1080	4	FSM	ENSMUSG00000030788.17	ENSMUST00000176716.3	1080	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	52.332271751441	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTTTATGTACTGAAGTG	NA	False	NA	NA	False	TTTAAA	-6	NA	110443609	110429455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_110430169_110432943_110433053_110436283_110436478_110443545
transcript_85894.known	chr7	+	4300	25	FSM	ENSMUSG00000005609.17	ENSMUST00000005749.6	4300	25	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_8	10.558616149856	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGAGTGCCTGTGTGTCCTCT	499	False	NA	31	True	AATAAA	-17	NA	110628157	110655584	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_110628389_110629420_110629520_110632897_110633138_110633554_110633673_110634494_110634585_110637592_110637742_110639761_110639870_110642022_110642131_110642232_110642470_110642623_110642714_110642820_110642950_110643042_110643227_110644583_110644673_110645460_110645647_110645722_110645811_110645969_110646119_110648470_110648588_110648716_110648863_110649640_110649713_110650151_110650288_110650656_110650804_110651508_110651667_110652588_110652686_110653020_110653134_110654565
transcript_85895.nic	chr7	+	695	3	ISM	ENSMUSG00000005609.17	ENSMUST00000152019.2	2987	16	-43	13591	1	0	5prime_fragment	FALSE	canonical	3	170	junction_2	2	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATCGCATTCGTCCTCAA	500	False	NA	NA	False	AAAAAG	-14	NA	110628158	110633263	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_110628389_110629420_110629520_110632897
transcript_85896.known	chr7	+	765	2	FSM	ENSMUSG00000005609.17	ENSMUST00000146709.2	765	2	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATATTTGTTCCTGCCTT	561	False	NA	NA	False	NA	NA	NA	110628219	110630016	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_110628389_110629420
transcript_8590.known	chr10	-	1667	9	FSM	ENSMUSG00000034748.17	ENSMUST00000119324.8	1667	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	91.439102002371	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTTACATTTATGTATT	9709	False	NA	-9	True	AATAAA	-27	NA	81463154	81457618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81457913_81458241_81458514_81458582_81458707_81459825_81459907_81459980_81460077_81460890_81460951_81461549_81461733_81462323_81462452_81462725
transcript_85902.known	chr7	-	7995	22	FSM	ENSMUSG00000005610.18	ENSMUST00000162415.9	7995	22	0	0	0	0	multi-exon	FALSE	canonical	3	4823	junction_9	518.544999107863	1602	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAAAGAGAAGAAACACA	NA	False	NA	NA	False	NA	NA	NA	110682237	110666956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
transcript_8591.nic	chr10	-	1419	9	NIC	ENSMUSG00000034748.17	novel	1667	9	NA	NA	-86	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	72.0017360901805	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTTACATTTATGTATT	9803	False	NA	-9	True	AATAAA	-27	NA	81463486	81457618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_-_81457913_81458241_81458514_81458582_81458707_81459825_81459907_81459980_81460077_81460890_81460951_81461549_81461733_81462323_81462452_81463305
transcript_85910.nic	chr7	-	3744	21	ISM	ENSMUSG00000005610.18_ENSMUSG00000110424.2	ENSMUST00000161051.8	3548	22	-58	0	-45	0	intron_retention	FALSE	canonical	3	1102	junction_8	1132.63140517999	1985	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	-19	True	AATAAA	-16	NA	110682282	110671138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
transcript_85927.nnic	chr7	-	1315	3	NNC	ENSMUSG00000110424.2	novel	547	3	NA	NA	-15	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAGTCAAAAATTCAAACAT	NA	False	NA	NA	False	AAGAAA	-2	NA	110721906	110716859	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_110717867_110720114_110720231_110721714
transcript_85929.nic	chr7	-	1492	2	ISM	ENSMUSG00000110424.2	ENSMUST00000210788.2	547	3	-20	2093	-20	-481	5prime_fragment	FALSE	canonical	1	2	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAAAGATG	NA	False	NA	NA	False	NA	NA	NA	110721911	110718935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_110720231_110721714
transcript_85930.known	chr7	-	547	3	FSM	ENSMUSG00000110424.2	ENSMUST00000210788.2	547	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTTATTGCTATTATTTC	NA	False	NA	NA	False	AAGAAA	-19	NA	110721891	110716842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_110717097_110720114_110720231_110721714
transcript_85931.known	chr7	+	5540	28	FSM	ENSMUSG00000059263.10	ENSMUST00000106653.4	5540	28	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_11	29.763171284045	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTTATCTTAGTCATT	NA	False	NA	4	True	AATAAA	-16	NA	111622710	111710591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_111622954_111652423_111652628_111654048_111654163_111655681_111655821_111658178_111658276_111662452_111662599_111663571_111663652_111666291_111666442_111673678_111673775_111673863_111674017_111676998_111677167_111681636_111681769_111682294_111682372_111683063_111683120_111685201_111685315_111686207_111686313_111686972_111687181_111688731_111688848_111690611_111690732_111691912_111692694_111700944_111701121_111701645_111701727_111703156_111703273_111703556_111703676_111705985_111706117_111707642_111707691_111707780_111707912_111709151
transcript_85932.known	chr7	-	3359	8	FSM	ENSMUSG00000030772.7	ENSMUST00000033036.7	3359	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	18.9198092927352	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCATGGTATGGGTCCATT	NA	False	NA	-1	True	AATAAA	-23	NA	111758264	111715223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_111717638_111718554_111718712_111719594_111719740_111720796_111720890_111748167_111748252_111749817_111749956_111757389_111757626_111758172
transcript_85937.known	chr7	+	4454	13	FSM	ENSMUSG00000030770.16	ENSMUST00000033030.14	4454	13	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_2	5.24603024517905	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCGCTGTTTCTTCCAA	3329	False	NA	NA	False	AATGAA	-13	NA	112026912	112190899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_112027308_112143383_112143474_112143939_112144011_112146717_112146821_112159135_112159277_112166969_112167086_112172077_112172137_112174561_112174582_112175606_112175669_112176142_112176212_112178862_112178965_112180156_112180230_112187746
transcript_85941.known	chr7	-	1563	4	FSM	ENSMUSG00000085945.4	ENSMUST00000211302.2	1563	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTTATTGTATATATATAT	NA	False	NA	NA	False	AATAAA	-13	NA	112279288	112264766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_112265938_112267058_112267108_112277055_112277234_112279123
transcript_85943.known	chr7	+	2908	20	FSM	ENSMUSG00000055116.9	ENSMUST00000047321.9	2908	20	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_10	14.0300429530047	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTGTTCCCAATTGATAA	3747	False	NA	NA	False	AATAAA	-20	NA	112806671	112913333	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_112806852_112833830_112833904_112873832_112873961_112878663_112878790_112879856_112880010_112882463_112882503_112882727_112882770_112884205_112884364_112886323_112886404_112890667_112890761_112892384_112892503_112894650_112894801_112898393_112898641_112900757_112900865_112902547_112902699_112903530_112903620_112905224_112905334_112907822_112907917_112912000_112912104_112912665
transcript_85957.known	chr7	-	2581	11	FSM	ENSMUSG00000038187.15	ENSMUST00000047091.14	2581	11	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_8	39.4138300600183	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACACCTTGGCTAGATTC	NA	False	NA	1	True	AATAAA	-34	NA	112968546	112914832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112950987_112951146_112964111_112964177_112968078_112968166_112968405
transcript_85962.nnic	chr7	-	2464	10	NIC	ENSMUSG00000038187.15	novel	2581	11	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	3	63	junction_7	47.410734836931	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCTGACCAACTTTATGA	NA	False	NA	-16	True	AATAAA	-17	NA	112968604	112914849	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112964111_112964177_112968078_112968166_112968405
transcript_85964.known	chr7	-	2394	9	FSM	ENSMUSG00000038187.15	ENSMUST00000119278.8	2394	9	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_7	50.6814500088543	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCTGACCAACTTTATGA	NA	False	NA	-16	True	AATAAA	-17	NA	112968599	112914849	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112968078_112968166_112968405
transcript_85969.known	chr7	+	4962	13	FSM	ENSMUSG00000030759.17	ENSMUST00000033018.15	4962	13	0	0	0	0	multi-exon	FALSE	canonical	2	280	junction_11	48.5005727343044	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGATGTACTCCTTTGCAA	NA	False	NA	14	True	AATAAA	-22	NA	113113040	113170718	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_113113145_113125194_113125246_113138479_113138674_113139742_113139919_113146608_113146789_113149172_113149351_113150279_113150325_113150441_113150561_113151141_113151210_113152848_113153021_113160582_113160713_113165591_113165720_113167301
transcript_8597.known	chr10	-	1891	8	FSM	ENSMUSG00000034748.17	ENSMUST00000042923.9	1891	8	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_1	20.6723713873254	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTGTTACATTTATGTA	9658	False	NA	-11	True	AATAAA	-25	NA	81463631	81457620	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81458514_81458582_81458707_81459825_81459907_81459980_81460077_81460890_81460951_81461549_81461733_81462323_81462452_81463305
transcript_85977.known	chr7	+	733	6	FSM	ENSMUSG00000030759.17	ENSMUST00000136158.8	733	6	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	148.237107365194	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGCATTGGCAGAGTATG	NA	False	NA	NA	False	NA	NA	NA	113113083	113149247	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_113113145_113125194_113125246_113138483_113138674_113139742_113139919_113146608_113146789_113149172
transcript_85978.known	chr7	-	2275	6	FSM	ENSMUSG00000055723.7	ENSMUST00000069449.7	2275	6	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_1	27.4779911929529	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACGCTTGACGGCTCCTTT	NA	False	NA	-1	True	ATTAAA	-21	NA	113717016	113646016	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_113647487_113649535_113649655_113657774_113657884_113658161_113658265_113659566_113659655_113716630
transcript_85981.known	chr7	-	3346	22	FSM	ENSMUSG00000030754.10	ENSMUST00000033012.9	3346	22	0	0	0	0	multi-exon	FALSE	canonical	3	435	junction_12	34.3731688854697	512	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTATCTGTGGGATTTTT	NA	False	NA	-7	True	AATAAA	-16	NA	113853946	113814793	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_113815173_113815697_113815854_113816856_113816947_113818760_113818907_113820877_113820998_113822437_113822583_113825837_113826018_113826181_113826410_113831409_113831531_113832431_113832593_113834173_113834271_113836021_113836168_113836528_113836676_113836761_113836870_113837584_113837705_113839859_113839998_113844658_113844752_113845962_113846078_113848042_113848213_113849280_113849511_113853104_113853255_113853840
transcript_85998.known	chr7	-	960	10	FSM	ENSMUSG00000030751.19	ENSMUST00000135570.8	960	10	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_9	875.758056108824	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTCCAGATGTAAGTTTT	NA	False	NA	NA	False	TTTAAA	-39	NA	113875261	113864029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875195
transcript_86008.known	chr7	-	956	1	FSM	ENSMUSG00000030751.19	ENSMUST00000210966.2	956	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	219	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	113875302	113874346	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_113874300_113875300
transcript_86009.known	chr7	-	1201	10	FSM	ENSMUSG00000030751.19	ENSMUST00000033008.10	1201	10	0	0	0	0	multi-exon	TRUE	canonical	3	2548	junction_6	196.061655709387	33079	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTCAAGTTTTTGTTTT	NA	False	NA	0	True	AATAAA	-17	NA	113875353	113863840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
transcript_86010.known	chr7	-	959	5	FSM	ENSMUSG00000030751.19	ENSMUST00000154909.2	959	5	0	0	0	0	multi-exon	FALSE	canonical	3	2548	junction_1	245.338923736125	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	113875289	113869723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
transcript_86011.known	chr7	-	1627	5	FSM	ENSMUSG00000030670.17	ENSMUST00000032908.15	1627	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2.58602010819715	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGTACTAGAGCAATAACAA	NA	False	NA	NA	False	AGTAAA	-21	NA	114162207	114149400	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_114149683_114150987_114151318_114151955_114152589_114153825_114153968_114161967
transcript_86012.known	chr7	-	1887	4	FSM	ENSMUSG00000030670.17	ENSMUST00000211506.2	1887	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	2.94392028877595	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTATTTACATCCTGATCA	NA	False	NA	NA	False	NA	NA	NA	114162125	114148916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_114149683_114150987_114151318_114151955_114152589_114161967
transcript_86014.nic	chr7	-	1035	5	NIC	ENSMUSG00000030669.14	novel	994	5	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_4	37.532485928859	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGAGTCTTTGCTGTTACT	2017	False	NA	0	True	ATTAAA	-27	NA	114235609	114230712	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_114231141_114231650_114231835_114233702_114233844_114234361_114234457_114235422
transcript_86016.known	chr7	-	404	4	FSM	ENSMUSG00000030669.14	ENSMUST00000206156.2	404	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	39.3474550920669	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGCTGGCAGGTCTGCTGA	2084	False	NA	NA	False	NA	NA	NA	114235542	114231786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_114231835_114233702_114233844_114234361_114234457_114235422
transcript_86017.known	chr7	-	720	4	FSM	ENSMUSG00000030669.14	ENSMUST00000206853.2	720	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	42.4342628858646	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGCACACTCAGGAAGATG	2096	False	NA	NA	False	NA	NA	NA	114235530	114232644	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_114233021_114233702_114233844_114234361_114234457_114235422
transcript_86018.known	chr7	-	994	5	FSM	ENSMUSG00000030669.14	ENSMUST00000032906.11	994	5	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_2	7.39932429347437	1193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGAGTCTTTGCTGTTACT	2034	False	NA	0	True	ATTAAA	-27	NA	114235592	114230712	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_114231141_114231650_114231835_114233702_114233844_114234361_114234457_114235446
transcript_86019.known	chr7	-	830	4	FSM	ENSMUSG00000030669.14	ENSMUST00000032907.9	830	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	40.2022663816634	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTGAACCATGGTGGTCA	2079	False	NA	NA	False	AATAAA	-16	NA	114235547	114232527	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_114233021_114233702_114233844_114234361_114234457_114235446
transcript_86020.nnic	chr7	-	890	2	Genic_Genomic	ENSMUSG00000086583.4	novel	1019	1	NA	NA	-1	15	multi-exon	FALSE	canonical	3	397	junction_1	0	1204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAAGTTCTCAGACATG	NA	False	NA	NA	False	AATAAA	-30	NA	114305471	114304436	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr7_-_114304872_114305016
transcript_86021.known	chr7	-	1019	1	FSM	ENSMUSG00000086583.4	ENSMUST00000071641.5	1019	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	44067	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	AATAAA	-15	NA	114305470	114304451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_114304500_114305500
transcript_86027.known	chr7	+	927	5	FSM	ENSMUSG00000030663.13	ENSMUST00000106608.8	927	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	736.785755834082	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGTTATACTTTGTTAAA	NA	False	NA	NA	False	NA	NA	NA	115692570	115704066	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_115692623_115698674_115698759_115701178_115701240_115702445_115702556_115703446
transcript_86033.known	chr7	-	633	4	FSM	ENSMUSG00000087621.8	ENSMUST00000140689.8	633	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTATACAATTAAGCTTAT	5801	False	NA	NA	False	AATAAA	-37	NA	115692394	115680993	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_115681322_115685861_115685991_115688347_115688426_115692296
transcript_86035.known	chr7	+	1153	3	FSM	ENSMUSG00000030663.13	ENSMUST00000106607.2	1153	3	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	845.5	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGATTGTGATGCCTT	NA	False	NA	26	True	AATAAA	-17	NA	115692575	115704442	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_115692623_115702445_115702556_115703446
transcript_86037.known	chr7	-	978	2	FSM	ENSMUSG00000091900.4	ENSMUST00000111755.5	978	2	0	0	0	0	multi-exon	TRUE	non_canonical	3	125	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGCAGGAGCTGGACTGA	NA	False	NA	NA	False	NA	NA	NA	115683793	115682601	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_115683208_115683421
transcript_86038.known	chr7	+	1430	5	FSM	ENSMUSG00000030663.13	ENSMUST00000151254.2	1430	5	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_3	766.33690371794	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATTGTGATGCCTTTAT	NA	False	NA	29	True	AATAAA	-20	NA	115692600	115704445	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_115692761_115698674_115698759_115701178_115701240_115702429_115702556_115703446
transcript_8604.known	chr10	+	829	5	FSM	ENSMUSG00000054708.18	ENSMUST00000132458.2	829	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	34.9070193514141	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGGGCAGGAATACCCAGT	NA	False	NA	NA	False	NA	NA	NA	81479636	81483308	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_81479728_81480809_81480978_81482138_81482268_81482626_81482693_81482933
transcript_86041.nnic	chr7	-	484	4	NNC	ENSMUSG00000045659.19	novel	5149	27	NA	NA	9	-89991	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	124.389174234202	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTGTGAGATGAGGTCTA	NA	False	NA	NA	False	AATAAA	-19	NA	115907602	115870469	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_115870702_115907159_115907218_115907306_115907384_115907485
transcript_86045.known	chr7	-	589	6	FSM	ENSMUSG00000090862.4	ENSMUST00000170953.3	589	6	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	4075.24362952695	28380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGTGGTTCTTTCTGC	NA	False	NA	0	True	AATAAA	-20	NA	115933430	115930739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_115930819_115931613_115931715_115932163_115932334_115932930_115933010_115933134_115933184_115933319
transcript_86046.known	chr7	-	2363	3	FSM	ENSMUSG00000090862.4	ENSMUST00000205548.2	2363	3	0	0	0	0	multi-exon	FALSE	canonical	3	9102	junction_2	1081.5	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933370	115930746	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_115933010_115933134_115933184_115933319
transcript_86047.known	chr7	-	1150	5	FSM	ENSMUSG00000090862.4	ENSMUST00000205906.2	1150	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	4265.5784118335	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933401	115930746	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_115930819_115931613_115931715_115932163_115933010_115933134_115933184_115933319
transcript_86048.known	chr7	-	653	5	FSM	ENSMUSG00000090862.4	ENSMUST00000206963.2	653	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	4507.63410782197	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933365	115930746	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_115930819_115931613_115931715_115932163_115932334_115932930_115933010_115933134
transcript_86049.known	chr7	-	1317	5	FSM	ENSMUSG00000090862.4	ENSMUST00000205490.2	1317	5	0	0	0	0	multi-exon	FALSE	canonical	3	8384	junction_1	1180.01069910404	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGTGTTTTGTGGTTCTT	NA	False	NA	-5	True	AATAAA	-15	NA	115933368	115930744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_115931715_115932163_115932334_115932930_115933010_115933134_115933184_115933319
transcript_86050.known	chr7	-	1927	2	FSM	ENSMUSG00000090862.4	ENSMUST00000205265.2	1927	2	0	0	0	0	multi-exon	FALSE	canonical	3	9102	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGGAAGAAATGTTACCT	NA	False	NA	NA	False	AAAAAG	-4	NA	115933352	115931289	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_115933184_115933319
transcript_86052.known	chr7	-	5670	34	FSM	ENSMUSG00000030660.10	ENSMUST00000206219.2	5670	34	0	0	0	0	multi-exon	TRUE	canonical	3	22	junction_32	16.3820323083798	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCACAGCCTTTACCACTG	NA	False	NA	NA	False	NA	NA	NA	116042684	115938961	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_115939459_115941386_115941513_115941596_115941707_115942045_115942119_115942209_115942328_115945353_115945479_115947354_115947563_115949267_115949378_115950007_115950165_115951032_115951203_115953212_115953350_115955469_115955600_115957870_115957964_115959230_115959336_115961281_115961463_115961792_115961888_115962583_115962678_115963662_115963852_115967278_115967425_115967981_115968094_115972029_115972198_115972962_115973086_115975457_115975669_115975748_115975795_115977854_115977999_115987078_115987143_115987276_115987357_115989678_115989791_115990507_115990629_115993435_115993594_116005094_116005199_116016687_116017817_116041825_116041914_116042538
transcript_86053.known	chr7	-	3354	1	FSM	ENSMUSG00000030660.10	ENSMUST00000206805.2	3354	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAAGGAACTTGGCTGT	NA	False	NA	NA	False	ATTAAA	-39	NA	115939864	115936510	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_115936500_115939900
transcript_86054.known	chr7	+	750	1	FSM	ENSMUSG00000108461.2	ENSMUST00000206201.2	750	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCTGGATGAAGTTCTGC	NA	False	NA	NA	False	AATAAA	-17	NA	116042809	116043559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_116042800_116043600
transcript_86055.nnic	chr7	+	1531	13	NIC	ENSMUSG00000030659.15	novel	1685	14	NA	NA	-17	0	combination_of_known_splicesites	FALSE	canonical	3	23	junction_1	13.8283123417944	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACACACGTTTTTATCTT	NA	False	NA	NA	False	AATAAA	-44	NA	116103586	116139819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_116103720_116121071_116121216_116123533_116123642_116125195_116125323_116125534_116125639_116126871_116127058_116127234_116127326_116128052_116128112_116128209_116128303_116132306_116132397_116135096_116135268_116139179_116139262_116139676
transcript_86058.known	chr7	+	1685	14	FSM	ENSMUSG00000030659.15	ENSMUST00000032895.15	1685	14	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	11.132340009308	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACACACGTTTTTATCTT	NA	False	NA	NA	False	AATAAA	-44	NA	116103603	116139819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_116103720_116108689_116108861_116121071_116121216_116123533_116123642_116125195_116125323_116125534_116125639_116126871_116127058_116127234_116127326_116128052_116128112_116128209_116128303_116132306_116132397_116135096_116135268_116139179_116139262_116139676
transcript_86059.known	chr7	+	1913	13	FSM	ENSMUSG00000030659.15	ENSMUST00000183175.8	1913	13	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	11.5854314646552	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATAAAGTCCTGATGTCTG	NA	False	NA	NA	False	AATAAA	-44	NA	116103649	116139678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_116103720_116108689_116108861_116121071_116121216_116123533_116123642_116125195_116125323_116125534_116125639_116126871_116127058_116127234_116127326_116128052_116128112_116128209_116128303_116132306_116132397_116135096_116135268_116139179
transcript_86063.known	chr7	-	1342	1	FSM	ENSMUSG00000107383.2	ENSMUST00000201488.2	1342	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1360	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGTCTTGCCAGTCGCCT	NA	False	NA	NA	False	NA	NA	NA	116425086	116423744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_116423700_116425100
transcript_86074.known	chr7	-	640	5	FSM	ENSMUSG00000008683.17	ENSMUST00000106588.8	640	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	4296.69669630054	5178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGGTCAGTCCTTTTGA	NA	False	NA	-33	True	AATAAA	-19	NA	117714900	117708286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_117708417_117709155_117709242_117714007_117714088_117714331_117714470_117714694
transcript_86077.known	chr7	-	5179	5	FSM	ENSMUSG00000008683.17	ENSMUST00000131374.8	5179	5	0	0	0	0	multi-exon	FALSE	canonical	3	7367	junction_4	1521.10568337641	57912	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTCTGAATGGCTTCTG	NA	False	NA	NA	False	AATAAA	-23	NA	117715411	117703594	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_117708417_117709155_117709242_117714007_117714088_117714331_117714470_117715358
transcript_86088.known	chr7	-	250	3	FSM	ENSMUSG00000008683.17	ENSMUST00000128482.8	250	3	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	5684.5	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGACATCTTGCTTCTCA	NA	False	NA	NA	False	NA	NA	NA	117715351	117714007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_117714088_117714331_117714470_117715319
transcript_86089.known	chr7	-	629	4	FSM	ENSMUSG00000008683.17	ENSMUST00000131840.3	629	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	4781.54105795285	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGATGTTCAACTCAAAGA	NA	False	NA	NA	False	NA	NA	NA	117715352	117709220	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_117709242_117714007_117714088_117714331_117714470_117714962
transcript_8609.known	chr10	+	4735	4	FSM	ENSMUSG00000096856.8	ENSMUST00000189672.7	4735	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	17.4610678049451	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGGTTATAATTCCTGT	NA	False	NA	NA	False	ATTAAA	-15	NA	81484892	81503195	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_81485001_81497831_81497959_81498158_81498220_81498756
transcript_86093.known	chr7	-	542	5	FSM	ENSMUSG00000030654.10	ENSMUST00000203154.3	542	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	977.48375945588	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGTAGTGTGGCTGCCGC	NA	False	NA	NA	False	GATAAA	-30	NA	117728799	117719522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117728691
transcript_86096.known	chr7	-	2171	6	FSM	ENSMUSG00000030654.10	ENSMUST00000032888.10	2171	6	0	0	0	0	multi-exon	FALSE	canonical	3	2173	junction_1	168.469106960297	6479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCTTTGTTAACTCTGA	NA	False	NA	-11	True	ATTAAA	-25	NA	117728885	117718113	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726356_117726491_117728691
transcript_86097.nnic	chr7	-	802	4	NNC	ENSMUSG00000108980.2	novel	596	3	NA	NA	-67	12382	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	0.816496580927726	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCAGCATCTCTTGGTCC	NA	False	NA	NA	False	NA	NA	NA	117874653	117860132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_117860543_117867547_117867680_117872785_117872868_117874475
transcript_8610.known	chr10	+	2384	4	FSM	ENSMUSG00000096795.5	ENSMUST00000200889.4	2384	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	8.5764535535124	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTATACTGCCATCCATT	NA	False	NA	NA	False	AATAAA	-23	NA	81540658	81557810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_81540735_81554752_81554880_81555078_81555140_81555690
transcript_86101.known	chr7	-	914	6	FSM	ENSMUSG00000030652.12	ENSMUST00000032887.4	914	6	0	0	0	0	multi-exon	FALSE	canonical	3	921	junction_3	42.5234053198941	6514	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTGGTTTTCTTGTGCT	6625	False	NA	-2	True	AATAAA	-16	NA	118132579	118124284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_118124518_118125046_118125116_118126559_118126700_118127526_118127642_118128781_118128961_118132401
transcript_86102.known	chr7	-	4546	16	FSM	ENSMUSG00000042246.6	ENSMUST00000044195.6	4546	16	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_8	12.8571640211466	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTGTTGGGTGCGTGTTG	4144	False	NA	-2	True	AATAAA	-18	NA	118183959	118135063	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_118137441_118138637_118138717_118141108_118141265_118142521_118142653_118144824_118145012_118146539_118146638_118146826_118146945_118149157_118149316_118150358_118150533_118151920_118152069_118155045_118155192_118158078_118158162_118160213_118160382_118163439_118163589_118165407_118165649_118183826
transcript_86103.known	chr7	+	517	3	FSM	ENSMUSG00000109284.2	ENSMUST00000209113.2	517	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGACGGAAAACAAGAATGG	NA	False	NA	NA	False	NA	NA	NA	118191565	118195964	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_118191684_118194175_118194258_118195647
transcript_86104.known	chr7	+	510	2	FSM	ENSMUSG00000109284.2	ENSMUST00000208859.2	510	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGGACCCCCAATAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	118191550	118196024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_118191684_118195647
transcript_86105.nnic	chr7	+	648	2	NNC	ENSMUSG00000109284.2	novel	510	2	NA	NA	2732	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTCTGTTTTGTTATGAA	NA	False	NA	NA	False	AATAAA	-23	NA	118194470	118196061	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_118194705_118195647
transcript_8611.known	chr10	-	625	4	FSM	ENSMUSG00000094622.3	ENSMUST00000219864.2	625	4	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	2.62466929133727	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACCCTACGGGTGCAGTG	NA	False	NA	NA	False	NA	NA	NA	81606995	81582040	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81582410_81582949_81583011_81583210_81583338_81606927
transcript_86115.known	chr7	-	737	6	FSM	ENSMUSG00000033917.16	ENSMUST00000132509.4	737	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	195.270683923624	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTTGGACTGTCAATAC	NA	False	NA	NA	False	NA	NA	NA	118304603	118288333	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_118288374_118290805_118291018_118293715_118293809_118294258_118294365_118297777_118297954_118304493
transcript_86117.known	chr7	-	1582	6	FSM	ENSMUSG00000033917.16	ENSMUST00000038791.15	1582	6	0	0	0	0	multi-exon	TRUE	canonical	3	428	junction_5	40.804901666344	828	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTACTGATCTTCTGGT	NA	False	NA	3	True	AATAAA	-28	NA	118305001	118287767	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_118288374_118290805_118291018_118293715_118293809_118294258_118294365_118297777_118297954_118304612
transcript_86119.known	chr7	-	923	5	FSM	ENSMUSG00000033917.16	ENSMUST00000208040.2	923	5	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_4	182.273146678275	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGGATTTTGTCTCCCCG	NA	False	NA	NA	False	NA	NA	NA	118304971	118290824	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_118291018_118293715_118293809_118294258_118294365_118297777_118297950_118304612
transcript_8612.known	chr10	-	465	1	FSM	ENSMUSG00000112740.2	ENSMUST00000217801.2	465	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTGAGTCCAGATGGCT	NA	False	NA	NA	False	NA	NA	NA	81654774	81654309	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81654300_81654800
transcript_86122.known	chr7	+	5097	31	FSM	ENSMUSG00000030982.20	ENSMUST00000059390.13	5097	31	0	0	0	0	multi-exon	TRUE	canonical	3	302	junction_1	75.0223744403406	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCACTGTGATGCTAATT	9989	False	NA	NA	False	ACTAAA	-15	NA	118339448	118442189	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_118339999_118342817_118342918_118345597_118345766_118347348_118347472_118348889_118348915_118352039_118352117_118353028_118353158_118359383_118359469_118365587_118365648_118372243_118372341_118373222_118373271_118374514_118374609_118378910_118378989_118379399_118379523_118389232_118389280_118390590_118390703_118391784_118391902_118393764_118393819_118396188_118396270_118399660_118399724_118400483_118400570_118403326_118403408_118406213_118406278_118409100_118409200_118411027_118411106_118412752_118412868_118425406_118425547_118432924_118433091_118437335_118437455_118439777_118439925_118440418
transcript_8613.known	chr10	-	463	1	FSM	ENSMUSG00000112697.2	ENSMUST00000218997.2	463	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAACTGAGTCCAGATGGC	5076	False	NA	NA	False	NA	NA	NA	81689112	81688649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_81688600_81689100
transcript_86130.nnic	chr7	+	1355	15	NNC	ENSMUSG00000030982.20	novel	1552	15	NA	NA	-23	-3054	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_14	144.575663404944	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGGGAGCGAAGCAGTTC	NA	False	NA	NA	False	AGTAAA	-19	NA	118339931	118380224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_118339999_118342817_118342918_118345597_118345766_118347348_118347472_118348889_118348915_118352039_118352117_118353028_118353158_118359383_118359469_118365587_118365648_118372243_118372341_118373222_118373271_118374514_118374609_118378910_118378989_118379399_118379523_118380143
transcript_86132.nnic	chr7	+	1039	10	NNC	ENSMUSG00000030982.20	novel	1552	15	NA	NA	-23	2365	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_9	186.698079367481	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCGACCCTCAGAGTCAT	NA	False	NA	NA	False	NA	NA	NA	118339931	118368132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_118339999_118342817_118342918_118345597_118345766_118347348_118347472_118348889_118348915_118352039_118352117_118353028_118353158_118359383_118359469_118365587_118365648_118367927
transcript_86134.nic	chr7	+	1084	9	NIC	ENSMUSG00000030982.20	novel	1102	9	NA	NA	-23	-71	combination_of_known_junctions	FALSE	canonical	3	28	junction_8	189.52226122543	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGTTAATTTTCTTTCAAT	NA	False	NA	NA	False	GATAAA	-16	NA	118339931	118361298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_118339999_118342817_118342918_118345597_118345766_118347348_118347472_118348889_118348915_118352039_118352117_118353028_118353158_118359383_118359469_118360988
transcript_86137.nic	chr7	+	954	9	ISM	ENSMUSG00000030982.20	ENSMUST00000129334.8	1552	15	-23	17511	-23	0	5prime_fragment	FALSE	canonical	3	302	junction_1	101.623616226741	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGTGTTTGAAGTCTGGTT	NA	False	NA	NA	False	NA	NA	NA	118339931	118365767	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_118339999_118342817_118342918_118345597_118345766_118347348_118347472_118348889_118348915_118352039_118352117_118353028_118353158_118359383_118359469_118365587
transcript_8614.known	chr10	+	2379	4	FSM	ENSMUSG00000112640.2	ENSMUST00000220314.2	2379	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	3.55902608401044	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGATATTTATACTGCCAT	NA	False	NA	NA	False	AATAAA	-18	NA	81699767	81716915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_81699844_81713862_81713990_81714188_81714250_81714800
transcript_86140.nnic	chr7	+	1093	6	NNC	ENSMUSG00000030982.20	novel	5097	31	NA	NA	-3381	0	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_1	229.732888372562	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAGCAGTGTCTCGGTGTG	NA	False	NA	8	True	ATTAAA	-19	NA	118417464	118440710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_118417694_118425406_118425547_118432924_118433091_118437335_118437455_118439777_118439925_118440418
transcript_86142.nnic	chr7	+	1014	6	NNC	ENSMUSG00000030982.20	novel	345	2	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_1	229.732888372562	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAGCAGTGTCTCGGTGTG	NA	False	NA	8	True	ATTAAA	-19	NA	118420850	118440710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_118421001_118425406_118425547_118432924_118433091_118437335_118437455_118439777_118439925_118440418
transcript_86143.nnic	chr7	+	982	6	NNC	ENSMUSG00000030982.20	novel	5097	31	NA	NA	-681	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	232.854117421187	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAGCAGTGTCTCGGTGTG	NA	False	NA	8	True	ATTAAA	-19	NA	118423116	118440710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_118423235_118425406_118425547_118432924_118433091_118437335_118437455_118439777_118439925_118440418
transcript_86145.known	chr7	+	1102	9	FSM	ENSMUSG00000030982.20	ENSMUST00000175922.8	1102	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	239.086804320105	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTGCAAAATTTAATTGAA	NA	False	NA	NA	False	NA	NA	NA	118339969	118361369	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_118339999_118342832_118342918_118345597_118345766_118347348_118347472_118348889_118348915_118352039_118352117_118353028_118353158_118359383_118359469_118360988
transcript_86146.known	chr7	+	2891	1	FSM	ENSMUSG00000073856.12	ENSMUST00000208658.2	2891	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTAGTGGTTTGTGATGTT	NA	False	NA	NA	False	NA	NA	NA	118454974	118457865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_118455000_118457900
transcript_86153.nnic	chr7	-	1779	5	NNC	ENSMUSG00000030980.18	novel	5382	5	NA	NA	-37	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	298.679175705304	120	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGGGTCACCTTCCGTTAA	NA	False	NA	-34	True	AATAAA	-14	NA	118454944	118444722	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_118445318_118447719_118447798_118449843_118449913_118451625_118452564_118454845
transcript_86155.known	chr7	-	5382	5	FSM	ENSMUSG00000030980.18	ENSMUST00000116280.9	5382	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	263.543639650059	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATATAGTCTTTTGAAT	NA	False	NA	-17	True	AATAAA	-16	NA	118455221	118441444	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_118445318_118447671_118447798_118449843_118449913_118451625_118452564_118454845
transcript_86156.known	chr7	-	4884	5	FSM	ENSMUSG00000030980.18	ENSMUST00000063607.12	4884	5	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_3	184.092877374438	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCCATGCCTAAAGCACAAA	NA	False	NA	-32	True	AATAAA	-1	NA	118455224	118441459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_118445318_118447671_118447798_118449843_118449913_118452111_118452564_118454845
transcript_86161.nnic	chr7	-	1519	5	NNC	ENSMUSG00000030980.18	novel	5382	5	NA	NA	-37	-259	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	298.679175705304	135	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCATTTCTTGATCAGTTG	NA	False	NA	-4	True	ATTAAA	-23	NA	118454944	118444982	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_118445318_118447719_118447798_118449843_118449913_118451625_118452564_118454845
transcript_86164.known	chr7	-	3253	4	FSM	ENSMUSG00000030980.18	ENSMUST00000126792.9	3253	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	268.622411574314	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTATTATTATTGTTGTTG	NA	False	NA	-10	True	ATTAAA	-17	NA	118455215	118443012	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_118445318_118447671_118447798_118452111_118452564_118454845
transcript_86169.nic	chr7	-	983	2	ISM	ENSMUSG00000030980.18	ENSMUST00000126792.9	3253	4	271	8667	-37	306	5prime_fragment	FALSE	canonical	3	591	junction_1	0	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAGAGGAAAGAGAACGG	NA	False	NA	7	True	NA	NA	NA	118454944	118451679	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_118452564_118454845
transcript_86170.nic	chr7	-	757	2	ISM	ENSMUSG00000030980.18	ENSMUST00000126792.9	3253	4	271	8893	-37	80	5prime_fragment	FALSE	canonical	3	591	junction_1	0	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAAGAAGACCCACCAGG	NA	False	NA	NA	False	NA	NA	NA	118454944	118451905	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_118452564_118454845
transcript_86171.nic	chr7	-	599	2	ISM	ENSMUSG00000030980.18	ENSMUST00000126792.9	3253	4	271	9051	-37	-78	5prime_fragment	FALSE	canonical	3	591	junction_1	0	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCTGACACGGAAGCCCT	NA	False	NA	NA	False	AAAAAG	-1	NA	118454944	118452063	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_118452564_118454845
transcript_86172.nic	chr7	-	341	2	ISM	ENSMUSG00000030980.18	ENSMUST00000126792.9	3253	4	271	9309	-37	-336	5prime_fragment	FALSE	canonical	3	591	junction_1	0	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGTAGCACTCACTTGGA	NA	False	NA	NA	False	AAAAAG	-1	NA	118454944	118452321	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_118452564_118454845
transcript_86173.known	chr7	-	1467	5	FSM	ENSMUSG00000030980.18	ENSMUST00000106549.9	1467	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	264.154665868313	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAGGGTCACCTTCCGTTA	NA	False	NA	-35	True	AATAAA	-13	NA	118454836	118444723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_118445318_118447671_118447798_118449843_118449913_118452111_118452564_118454610
transcript_86175.known	chr7	-	4518	4	FSM	ENSMUSG00000008734.10	ENSMUST00000008878.10	4518	4	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	4.64279609239471	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAAGATGCGTGGTAGCTT	NA	False	NA	-3	True	AATAAA	-15	NA	118594434	118571269	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_118574427_118575735_118575894_118582837_118583869_118594262
transcript_86177.known	chr7	-	686	2	FSM	ENSMUSG00000008734.10	ENSMUST00000207614.2	686	2	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTGGAGCCAGCCTGTCA	8700	False	NA	NA	False	NA	NA	NA	118576005	118574010	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_118574427_118575735
transcript_86180.known	chr7	-	2689	4	FSM	ENSMUSG00000030942.9	ENSMUST00000033236.9	2689	4	0	0	0	0	multi-exon	FALSE	canonical	3	902	junction_1	48.9239773072014	624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGCATTCTTTTTTATT	NA	False	NA	-1	True	AATAAA	-20	NA	119320021	119314315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_119316293_119317244_119317494_119318349_119318525_119319733
transcript_86182.nic	chr7	-	529	3	ISM	ENSMUSG00000030942.9	ENSMUST00000033236.9	2689	4	-11	3123	-11	596	5prime_fragment	FALSE	canonical	3	927	junction_2	44.5	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGACAAGGGTTATTCTAC	NA	False	NA	NA	False	AAGAAA	-3	NA	119320032	119317438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_119317494_119318349_119318525_119319733
transcript_86185.known	chr7	+	1437	2	FSM	ENSMUSG00000100153.3	ENSMUST00000207161.2	1437	2	0	0	0	0	multi-exon	FALSE	canonical	3	469	junction_1	0	201	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAACG	NA	False	NA	NA	False	NA	NA	NA	119339148	119341449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_119340294_119341157
transcript_86227.known	chr7	-	973	9	FSM	ENSMUSG00000030929.18	ENSMUST00000106523.8	973	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	25.2128439490669	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAACTCACAAGTCAGGA	NA	False	NA	NA	False	AATAAA	-13	NA	119393190	119367901	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_119368116_119385961_119386051_119386626_119386709_119386956_119387058_119389456_119389614_119390323_119390452_119391487_119391572_119391653_119391722_119393140
transcript_86228.known	chr7	-	1241	10	FSM	ENSMUSG00000030929.18	ENSMUST00000063902.14	1241	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	31.084115271666	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATAAAAATAATTCATT	NA	False	NA	NA	False	NA	NA	NA	119393190	119371160	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_119371568_119371767_119371843_119385961_119386051_119386626_119386709_119386956_119387058_119389456_119389614_119390323_119390452_119391487_119391572_119391653_119391722_119393140
transcript_8623.known	chr10	+	2360	4	FSM	ENSMUSG00000061371.8	ENSMUST00000210325.2	2360	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	1.24721912892465	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACAGTTTTATCTATATTA	NA	False	NA	NA	False	AATAAA	-11	NA	81883956	81897415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_81884064_81894203_81894331_81894516_81894578_81895350
transcript_86230.known	chr7	+	752	5	FSM	ENSMUSG00000030922.13	ENSMUST00000054440.11	752	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	26.343879744639	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGAACTATGACATTGTCC	NA	False	NA	NA	False	NA	NA	NA	119495104	119515656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_119495114_119499333_119499532_119509026_119509186_119513395_119513489_119515363
transcript_86235.known	chr7	+	875	4	FSM	ENSMUSG00000030922.13	ENSMUST00000106518.9	875	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	16.3095064303001	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGACAGCTTTAGATTGATC	NA	False	NA	-11	True	NA	NA	NA	119495083	119515956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_119495114_119509026_119509186_119513395_119513489_119515363
transcript_86236.known	chr7	+	936	4	FSM	ENSMUSG00000030922.13	ENSMUST00000208202.2	936	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	24.5356882927706	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTATAGGCTTTTTTG	NA	False	NA	-74	True	NA	NA	NA	119495092	119515893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_119495114_119508893_119509186_119513395_119513489_119515363
transcript_86239.known	chr7	+	1279	4	FSM	ENSMUSG00000030922.13	ENSMUST00000106517.9	1279	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	29.6348143611905	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTGTTGTTTTGTTGAT	NA	False	NA	9	True	TATAAA	-20	NA	119495514	119515976	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_119495796_119508893_119509186_119513395_119513489_119515363
transcript_86242.nnic	chr7	+	891	3	NIC	ENSMUSG00000030922.13	novel	875	4	NA	NA	-155	0	combination_of_known_splicesites	FALSE	canonical	3	5	junction_1	31.5	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTGTTGTTTTGTTGAT	NA	False	NA	9	True	TATAAA	-20	NA	119494928	119515976	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_119495114_119513395_119513489_119515363
transcript_86244.known	chr7	-	630	3	FSM	ENSMUSG00000048787.14	ENSMUST00000142120.2	630	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	52.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCCTAGCCTCTTAACAGA	NA	False	NA	NA	False	NA	NA	NA	119461055	119457215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_119457280_119458602_119459139_119461025
transcript_86245.known	chr7	-	5985	3	FSM	ENSMUSG00000048787.14	ENSMUST00000059851.14	5985	3	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_2	16	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATGATATCTCATAGTTAG	NA	False	NA	NA	False	AATAAA	-42	NA	119494968	119452018	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_119457280_119458602_119459139_119494780
transcript_86249.known	chr7	+	1069	4	FSM	ENSMUSG00000030922.13	ENSMUST00000106516.2	1069	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	24.9977776790036	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGTTTTGTTGATTTT	NA	False	NA	12	True	TATAAA	-23	NA	119499330	119515979	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_119499532_119509026_119509186_119513395_119513489_119515363
transcript_8625.known	chr10	+	2284	3	FSM	ENSMUSG00000061371.8	ENSMUST00000209622.2	2284	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	19	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTATCTATATTATCAAA	NA	False	NA	NA	False	AATAAA	-16	NA	81883976	81897420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_81884064_81894203_81894331_81895350
transcript_86252.known	chr7	+	1484	5	FSM	ENSMUSG00000030917.14	ENSMUST00000033210.13	1484	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	8.8423695919137	515	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGTTTTCTTTTTCTT	NA	False	NA	5	True	ATTAAA	-14	NA	119701575	119720209	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_119701739_119703852_119704053_119714608_119714778_119715442_119715582_119719396
transcript_86259.known	chr7	-	1383	8	FSM	ENSMUSG00000030905.6	ENSMUST00000033198.6	1383	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	2.55550625999976	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCTTTGACAACTTTCTA	NA	False	NA	1	True	AATAAA	-21	NA	119801334	119785602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_119785922_119788948_119789034_119789674_119789797_119794547_119794732_119796872_119796975_119798470_119798534_119800299_119800451_119800977
transcript_8626.nnic	chr10	+	903	5	NNC	ENSMUSG00000112160.2	novel	2726	4	NA	NA	-66	11827	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_4	9.08295106229247	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCTGCTTTTCCATAAAAC	NA	False	NA	NA	False	NA	NA	NA	81919120	81958877	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_81919247_81943643_81943771_81943972_81944034_81944572_81944605_81958320
transcript_86267.nnic	chr7	+	899	5	NIC	ENSMUSG00000051900.13	novel	3551	11	NA	NA	-34	-43649	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	0.82915619758885	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CATAAGGAGAAAGAGACAAA	NA	False	NA	NA	False	NA	NA	NA	120008835	120035273	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_120008990_120026352_120026481_120030330_120030473_120032565_120032826_120035058
transcript_8627.known	chr10	+	2726	4	FSM	ENSMUSG00000112160.2	ENSMUST00000220287.2	2726	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	4.78423336480244	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTATATACTGCCATCCAT	NA	False	NA	NA	False	AATAAA	-19	NA	81919186	81947050	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_81919247_81943643_81943771_81943972_81944034_81944572
transcript_86275.known	chr7	+	1896	14	FSM	ENSMUSG00000030884.13	ENSMUST00000033176.7	1896	14	0	0	0	0	multi-exon	FALSE	canonical	3	1087	junction_9	72.1248916810278	2166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACATCCTCTCAGCTGGT	NA	False	NA	22	True	AGTAAA	-14	NA	120234398	120258747	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_120234546_120236884_120236969_120237070_120237221_120239456_120239522_120240901_120240959_120242248_120242374_120244373_120244472_120248568_120248627_120250056_120250153_120250407_120250608_120253203_120253285_120255323_120255401_120256739_120256894_120258243
transcript_86298.known	chr7	-	1812	2	FSM	ENSMUSG00000097343.3	ENSMUST00000180977.3	1812	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGAACCACGTTGGTCC	NA	False	NA	NA	False	AATAAA	-13	NA	120276793	120272957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_120274500_120276523
transcript_86299.known	chr7	+	4831	3	FSM	ENSMUSG00000046096.8	ENSMUST00000060175.8	4831	3	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_2	55.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTGCCTTCGTCGTTGTG	NA	False	NA	NA	False	NA	NA	NA	120276853	120334077	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_120277094_120325342_120325556_120329699
transcript_863.known	chr1	+	2826	10	FSM	ENSMUSG00000046101.17	ENSMUST00000052843.12	2826	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	10.3255645826568	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACATTATTTTTTGTTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	9978862	9992750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_9978916_9981899_9982038_9982134_9982266_9982380_9982399_9985698_9985895_9986540_9986664_9986774_9986880_9989244_9989371_9990659_9990898_9991052
transcript_86302.known	chr7	+	813	2	FSM	ENSMUSG00000046096.8	ENSMUST00000208454.2	813	2	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_1	0	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGAAGGCAGTCATTTGC	NA	False	NA	21	True	AATAAA	-27	NA	120276842	120325904	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_120277094_120325342
transcript_86303.known	chr7	+	6580	18	FSM	ENSMUSG00000035064.18	ENSMUST00000047875.16	6580	18	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_5	8.32971086202773	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCTTTTGATTTGTCCCG	NA	False	NA	NA	False	NA	NA	NA	120442053	120506673	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_120442324_120457566_120457886_120472531_120472633_120475654_120475716_120479036_120479075_120479527_120479700_120483880_120484031_120484644_120484778_120485032_120485161_120485808_120486011_120487081_120487150_120488412_120488491_120488911_120488975_120490818_120490954_120491087_120491277_120494406_120494532_120498590_120498770_120502504
transcript_86307.known	chr7	+	3047	18	FSM	ENSMUSG00000035064.18	ENSMUST00000106489.9	3047	18	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	20.5168510369059	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTGGCCTTTATACATGC	NA	False	NA	9	True	AATATA	-16	NA	120442822	120503224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_120443009_120457566_120457886_120472531_120472633_120475654_120475716_120479036_120479075_120479527_120479700_120483880_120484031_120484644_120484778_120485032_120485161_120485808_120486011_120487081_120487150_120488412_120488491_120488911_120488975_120490818_120490954_120491087_120491277_120494406_120494532_120498590_120498770_120502504
transcript_86308.known	chr7	+	4194	21	FSM	ENSMUSG00000030880.15	ENSMUST00000033173.15	4194	21	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_16	33.3787357459805	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTCTTCAGAATGTGGTA	NA	False	NA	NA	False	NA	NA	NA	120517006	120546655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_120517134_120522121_120522192_120523444_120523496_120526166_120526245_120527110_120527227_120527650_120527734_120530101_120530210_120530483_120530534_120531356_120531477_120532529_120532616_120532908_120532954_120533055_120533148_120533995_120534117_120536825_120536908_120538218_120538279_120538361_120538520_120538971_120539034_120539524_120540049_120541712_120541791_120543769_120543896_120544698
transcript_86309.known	chr7	+	1823	5	FSM	ENSMUSG00000030876.8	ENSMUST00000033163.8	1823	5	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_4	46.4435140789325	368	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCACCATGTTCTTCT	9427	False	NA	7	True	AATAAA	-16	NA	120633667	120676058	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_120634199_120647060_120647252_120651309_120651520_120656437_120656623_120675352
transcript_86314.known	chr7	-	2902	17	FSM	ENSMUSG00000034951.11	ENSMUST00000057576.8	2902	17	0	0	0	0	multi-exon	TRUE	canonical	3	174	junction_8	14.1585607937389	187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGGGTGTTTCCTTCTTCT	8924	False	NA	0	True	AATAAA	-17	NA	121580934	121522061	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_121522692_121524646_121524791_121528409_121528525_121529752_121529837_121534880_121535022_121536176_121536364_121540392_121540459_121543000_121543118_121548967_121549123_121550385_121550514_121555152_121555352_121562360_121562484_121563423_121563507_121570502_121570672_121576489_121576607_121576838_121576988_121580639
transcript_86317.known	chr7	-	4915	17	FSM	ENSMUSG00000030872.15	ENSMUST00000033160.15	4915	17	0	0	0	0	multi-exon	FALSE	canonical	3	748	junction_16	35.03391214238	337	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTAGTGTCACTGTTTTG	NA	False	NA	-5	True	AATAAA	-14	NA	121620445	121585944	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_121589025_121589646_121589758_121590716_121590887_121594066_121594225_121596513_121596645_121596983_121597013_121597285_121597376_121598080_121598207_121599341_121599424_121601297_121601436_121601889_121601971_121603109_121603211_121606479_121606604_121607553_121607653_121609905_121609982_121611371_121611457_121620211
transcript_86322.known	chr7	-	2046	9	FSM	ENSMUSG00000030871.12	ENSMUST00000033159.4	2046	9	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_5	13.5317912709294	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGGTGTTTTGCCTCCAT	NA	False	NA	-1	True	TTTAAA	-18	NA	121666486	121638043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_121638382_121638934_121639071_121643524_121643656_121643735_121643890_121645846_121645956_121647324_121647798_121654781_121654972_121662151_121662308_121666127
transcript_86326.known	chr7	+	4849	7	FSM	ENSMUSG00000030870.13	ENSMUST00000033158.6	4849	7	0	0	0	0	multi-exon	FALSE	canonical	3	624	junction_1	33.5642005052341	345	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTCTCTTTCCTTCC	NA	False	NA	9	True	ATTAAA	-14	NA	121666397	121681417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_121666708_121666886_121667217_121668003_121668213_121670924_121670991_121671132_121671239_121675330_121675414_121677672
transcript_86329.nnic	chr7	-	985	5	NNC	ENSMUSG00000030871.12	novel	4900	7	NA	NA	-8	-12717	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	77.1832235657465	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCAGAAAGGAAGGGTTTC	NA	False	NA	NA	False	NA	NA	NA	121666301	121650760	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_121651108_121651707_121651826_121654781_121654972_121662151_121662308_121666127
transcript_86330.nnic	chr7	-	696	4	NNC	ENSMUSG00000030871.12	novel	4900	7	NA	NA	-24	-10634	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	73.0889868584864	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACAGCTCTTGATATTTTC	NA	False	NA	NA	False	AAAACA	-2	NA	121666317	121648677	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_121648838_121654781_121654972_121662151_121662308_121666127
transcript_86331.nnic	chr7	-	663	3	Intergenic	novelGene_117	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCAGAAAGGAAGGGTTTC	NA	False	NA	NA	False	NA	NA	NA	121652310	121650760	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr7_-_121651123_121651720_121651952_121652240
transcript_86334.nic	chr7	-	811	3	ISM	ENSMUSG00000030871.12	ENSMUST00000147397.2	3222	8	-24	16463	-24	-16463	5prime_fragment	FALSE	canonical	3	147	junction_2	7.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGTCTTCGCTTCGCTTC	NA	False	NA	NA	False	AATACA	-3	NA	121666317	121654506	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_121654972_121662151_121662308_121666127
transcript_86335.known	chr7	-	3222	8	FSM	ENSMUSG00000030871.12	ENSMUST00000147397.2	3222	8	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_2	8.41281820819169	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGGTGTTTTGCCTCCAT	NA	False	NA	-1	True	TTTAAA	-18	NA	121666293	121638043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_121638382_121638934_121639071_121643524_121643656_121643735_121643890_121645846_121647798_121654781_121654972_121662151_121662308_121666127
transcript_86344.known	chr7	-	1416	5	FSM	ENSMUSG00000030869.12	ENSMUST00000123296.8	1416	5	0	0	0	0	multi-exon	FALSE	canonical	3	4604	junction_1	400.950978923858	5048	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTGTTTGAGAGCATCTT	6393	False	NA	NA	False	AATAAA	-13	NA	121701074	121689278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_121690187_121690808_121690909_121692839_121692928_121695831_121695955_121700877
transcript_86345.known	chr7	-	552	5	FSM	ENSMUSG00000030869.12	ENSMUST00000106471.9	552	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	2300.90270328843	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTTTTCTCAATTAGTTT	6508	False	NA	-11	True	AATAAA	-16	NA	121700959	121690053	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_121690213_121690808_121690909_121692839_121692928_121695831_121695955_121700877
transcript_86346.known	chr7	-	3750	13	FSM	ENSMUSG00000044702.14	ENSMUST00000098068.10	3750	13	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_9	28.0835806121655	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGGCTTGTTCTATTTT	NA	False	NA	0	True	AATAAA	-20	NA	121732169	121706484	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121723479_121724151_121726271_121727667_121728145_121728240_121728896_121728957_121731942
transcript_86349.nnic	chr7	-	1703	11	NIC	ENSMUSG00000044702.14	novel	3750	13	NA	NA	17	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_8	41.0980534818865	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTTGGCTTGTTCTAT	NA	False	NA	-3	True	AATAAA	-17	NA	121732191	121706487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121728145_121728240_121728896_121728957_121731942
transcript_8635.known	chr10	-	2035	4	FSM	ENSMUSG00000062931.16	ENSMUST00000041264.15	2035	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	52.6898683071254	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATTTATGTTGTCATTA	NA	False	NA	NA	False	NA	NA	NA	82077107	82060683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_82062428_82063364_82063426_82063632_82063760_82077004
transcript_86352.known	chr7	-	1553	10	FSM	ENSMUSG00000044702.14	ENSMUST00000063587.13	1553	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	51.0709987525234	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGGCTTGTTCTATTTT	NA	False	NA	0	True	AATAAA	-20	NA	121732132	121706484	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121728896_121728957_121731942
transcript_86353.nnic	chr7	-	1289	10	NIC	ENSMUSG00000044702.14	novel	3304	12	NA	NA	17	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	56.0801894996886	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATTGCTTGTCGAATTTTA	NA	False	NA	NA	False	AATAAA	-16	NA	121732191	121710794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_121710994_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121728145_121728240_121728896_121728957_121731942
transcript_86355.known	chr7	-	2145	1	FSM	ENSMUSG00000044702.14	ENSMUST00000205352.2	2145	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	121732208	121730063	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_121730100_121732200
transcript_86358.known	chr7	+	1532	6	FSM	ENSMUSG00000030868.7	ENSMUST00000033156.5	1532	6	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_5	42.3008274150755	943	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTTAGGCTCATTCATT	NA	False	NA	14	True	AATAAA	-15	NA	121732263	121748267	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_121732405_121733391_121733461_121734274_121734394_121737470_121737583_121743007_121743111_121747279
transcript_86359.known	chr7	+	2506	5	FSM	ENSMUSG00000030868.7	ENSMUST00000123602.2	2506	5	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_4	38.4740172064213	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTTAGGCTCATTCATT	NA	False	NA	14	True	AATAAA	-15	NA	121732276	121748267	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_121733461_121734274_121734394_121737470_121737583_121743007_121743111_121747279
transcript_8636.known	chr10	-	2124	4	FSM	ENSMUSG00000062931.16	ENSMUST00000156218.2	2124	4	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_1	59.275252471462	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTTATTTATGTTGTC	NA	False	NA	NA	False	NA	NA	NA	82077114	82060687	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_82062428_82063278_82063426_82063632_82063760_82077004
transcript_86364.known	chr7	+	2199	10	FSM	ENSMUSG00000030867.8	ENSMUST00000033154.8	2199	10	0	0	0	0	multi-exon	FALSE	canonical	3	1108	junction_2	92.3724345606776	1989	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTTTCTCTTTTTG	NA	False	NA	56	True	ATTAAA	-14	NA	121758661	121769096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_121759174_121759758_121759928_121760729_121760875_121761615_121761710_121763242_121763463_121766819_121766976_121767788_121767867_121768051_121768207_121768303_121768487_121768609
transcript_86370.known	chr7	+	6345	3	FSM	ENSMUSG00000030779.17	ENSMUST00000098062.9	6345	3	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	1.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTGTTTTGTGGATGA	7702	False	NA	NA	False	AATAAA	-13	NA	122569922	122583615	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_122570351_122575158_122575259_122577798
transcript_86371.known	chr7	-	993	1	FSM	ENSMUSG00000108452.2	ENSMUST00000205998.2	993	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTACAGTGTCCAATGTCC	NA	False	NA	NA	False	AATAAA	-25	NA	122569273	122568280	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_122568300_122569300
transcript_86372.nnic	chr7	+	362	3	Fusion	ENSMUSG00000109814.2_ENSMUSG00000052707.9	novel	662	3	NA	NA	-55	-18869	multi-exon	FALSE	canonical	0	0	junction_2	3	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAAGACGACAAGAAAA	1681	False	NA	NA	False	NA	NA	NA	122630582	122743017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr7_+_122630774_122660895_122661022_122742972
transcript_86373.known	chr7	+	1880	4	FSM	ENSMUSG00000109814.2	ENSMUST00000209402.2	1880	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	1.69967317119759	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTTGGTTATGGTTT	1815	False	NA	NA	False	NA	NA	NA	122630716	122667528	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_122630774_122660895_122661022_122665262_122665560_122666128
transcript_86374.known	chr7	+	662	3	FSM	ENSMUSG00000109814.2	ENSMUST00000211504.2	662	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	0.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAACAAAACAAAAA	1736	False	NA	NA	False	NA	NA	NA	122630637	122665662	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_122630774_122660895_122661022_122665262
transcript_86377.nic	chr7	+	541	3	ISM	ENSMUSG00000052707.9	ENSMUST00000206888.2	3625	9	-371	33898	0	-18869	5prime_fragment	FALSE	canonical	3	106	junction_2	15.5	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAAGACGACAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	122723107	122743017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_122723556_122723890_122723939_122742972
transcript_86378.known	chr7	+	8183	24	FSM	ENSMUSG00000052707.9	ENSMUST00000094053.7	8183	24	0	0	0	0	multi-exon	TRUE	canonical	3	73	junction_8	29.037424518788	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAAGTGGTTTTGCTTTT	NA	False	NA	21	True	AATAAA	-20	NA	122723403	122794519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_122723556_122723890_122723939_122742972_122743061_122751386_122751409_122761716_122762101_122768758_122771342_122772455_122772633_122773366_122773543_122774648_122774682_122776046_122776128_122776904_122776957_122778939_122779083_122779762_122779901_122780541_122780671_122781178_122781257_122781468_122781677_122783378_122783511_122785785_122785945_122786575_122786717_122788010_122788119_122789067_122789290_122790722_122790794_122791281_122791422_122791801
transcript_8638.nic	chr10	-	3024	3	NIC	ENSMUSG00000062931.16	novel	2035	4	NA	NA	-45	0	intron_retention	FALSE	canonical	3	139	junction_1	4.5	593	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATTTATGTTGTCATTA	NA	False	NA	NA	False	NA	NA	NA	82077159	82060683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_-_82063426_82063632_82063760_82077004
transcript_86386.known	chr7	-	3336	20	FSM	ENSMUSG00000030766.16	ENSMUST00000106442.9	3336	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	53.0955862029814	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCTAATTCTTAGAGGCA	NA	False	NA	-1	True	ATTAAA	-25	NA	122969109	122878493	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_122879340_122885720_122886237_122891258_122891429_122893694_122893929_122895632_122895790_122896717_122896810_122899711_122899826_122902918_122903000_122905597_122905680_122906190_122906303_122907508_122907637_122913636_122913719_122913866_122913936_122917609_122917722_122920810_122920888_122921101_122921214_122922835_122922910_122926461_122926567_122930448_122930489_122968976
transcript_8639.known	chr10	+	490	5	FSM	ENSMUSG00000073427.5	ENSMUST00000211099.2	490	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	62.9816441512922	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAGAAAAAAGAAAAAAAAG	NA	False	NA	NA	False	AAAACA	-44	NA	82190088	82236680	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_82190216_82204404_82204532_82204731_82204793_82219596_82219679_82236587
transcript_86392.known	chr7	+	1286	11	FSM	ENSMUSG00000030763.8	ENSMUST00000206574.2	1286	11	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_5	37.2322440903043	1644	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCTGCTACATCTGTACA	6898	False	NA	22	True	AATAAA	-22	NA	122977278	123029572	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_122977479_122999660_122999753_123000666_123000789_123002057_123002135_123003645_123003712_123009950_123010050_123017440_123017562_123020760_123020863_123021929_123022022_123027316_123027415_123029355
transcript_86417.known	chr7	+	1159	5	FSM	ENSMUSG00000030762.12	ENSMUST00000206106.2	1159	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	12.3895116933639	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCCAGGTGTCTGTTGACT	5836	False	NA	1	True	AATAAA	-15	NA	123062973	123067221	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_123063065_123063411_123063539_123064331_123064547_123065808_123065944_123066630
transcript_86418.known	chr7	+	1487	6	FSM	ENSMUSG00000030762.12	ENSMUST00000033023.10	1487	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	2.57681974534503	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTCTGTTGACTTGTCTT	4376	False	NA	7	True	AATAAA	-21	NA	123061513	123067227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_123061682_123061796_123062042_123063411_123063539_123064331_123064547_123065808_123065944_123066630
transcript_8642.known	chr10	+	3330	4	FSM	ENSMUSG00000073427.5	ENSMUST00000210381.2	3330	4	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_3	14.0554457615387	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGATGTTTATGTTGTC	NA	False	NA	3	True	AATAAA	-15	NA	82190149	82215470	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_82190216_82204404_82204532_82204731_82204793_82212394
transcript_86420.nnic	chr7	-	505	5	NNC	ENSMUSG00000108814.2	novel	494	4	NA	NA	-477	5204	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	3.34477204006491	29	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGCTTTTGTTGGGCAAAA	NA	False	NA	NA	False	NA	NA	NA	125017763	125010961	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_125011050_125016649_125016844_125017022_125017107_125017219_125017292_125017696
transcript_86428.known	chr7	+	2389	8	FSM	ENSMUSG00000030752.9	ENSMUST00000033010.9	2389	8	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_7	4.74664220738176	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAAAGAAACATTTCTTTA	NA	False	NA	NA	False	AATAAA	-27	NA	125043847	125061441	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_125043965_125051399_125051901_125054262_125054430_125055604_125055738_125056135_125056181_125059046_125059197_125060086_125060180_125060258
transcript_86438.known	chr7	-	1120	8	FSM	ENSMUSG00000030750.14	ENSMUST00000033006.14	1120	8	0	0	0	0	multi-exon	FALSE	canonical	3	553	junction_7	177.832872698624	5727	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTTGTGTGAGGTTGGGT	NA	False	NA	-11	True	AGTAAA	-33	NA	125090768	125066811	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_125067016_125067450_125067572_125068200_125068318_125070284_125070432_125071046_125071125_125071279_125071402_125085509_125085657_125090584
transcript_86439.known	chr7	-	6961	37	FSM	ENSMUSG00000032777.10	ENSMUST00000055506.9	6961	37	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_34	23.9112782676933	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTGTGTATTGGCCTAATG	NA	False	NA	1	True	ATTAAA	-16	NA	125306952	125240125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_125240906_125241618_125241812_125242497_125242538_125243045_125243545_125244686_125244977_125245645_125245906_125246511_125246800_125247568_125247742_125250234_125250329_125251034_125251098_125253638_125253752_125255015_125255098_125256657_125256801_125258228_125258387_125261430_125261620_125261748_125261828_125262130_125262267_125262579_125262719_125266195_125266374_125266483_125266581_125267165_125267264_125268025_125268172_125268320_125268591_125268754_125268940_125269646_125269751_125271856_125272011_125273228_125273366_125275654_125275858_125276472_125276789_125277997_125278114_125280273_125280436_125292310_125292435_125295632_125295730_125298120_125298265_125298515_125298693_125303002_125303213_125306628
transcript_8644.known	chr10	+	947	8	FSM	ENSMUSG00000073427.5	ENSMUST00000210025.2	947	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	59.6404191118468	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAATTTCAACA	NA	False	NA	NA	False	NA	NA	NA	82190092	82258042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_82190216_82204404_82204532_82204731_82204793_82219596_82219679_82236587_82236821_82239804_82239864_82245267_82245321_82257833
transcript_86442.nic	chr7	+	1621	3	ISM	ENSMUSG00000032743.16	ENSMUST00000205462.2	4185	15	42996	0	7392	0	3prime_fragment	FALSE	canonical	3	19	junction_1	5.5	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGTGTGGTACACTGGAT	NA	False	NA	NA	False	AATAAA	-16	NA	125471834	125473965	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_125472020_125472103_125472193_125472618
transcript_86443.known	chr7	-	4552	24	FSM	ENSMUSG00000000131.16	ENSMUST00000168189.8	4552	24	0	0	0	0	multi-exon	TRUE	canonical	3	436	junction_21	38.8223134638356	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGATGGGGCATCTTTGT	NA	False	NA	NA	False	AATAAA	-28	NA	125799673	125700886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_125701563_125703875_125704107_125704272_125704372_125706242_125706405_125707623_125707796_125707957_125708073_125709085_125709242_125711923_125712114_125712828_125712976_125714979_125715125_125719528_125719622_125723543_125723704_125727398_125727469_125728719_125728813_125730197_125730307_125739736_125739847_125748405_125748533_125751997_125752452_125755895_125755974_125760032_125760193_125768300_125768499_125770201_125770315_125773329_125773421_125799070
transcript_86444.nnic	chr7	-	654	3	Intergenic	novelGene_118	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTTTGTTTTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	125800756	125793212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr7_-_125793414_125796806_125796864_125800360
transcript_86445.known	chr7	-	483	1	FSM	ENSMUSG00000066180.6	ENSMUST00000084598.6	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGGACACAAAGAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	125899088	125898605	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_125898600_125899100
transcript_86447.nnic	chr7	-	1223	13	NNC	ENSMUSG00000030742.8	novel	1235	12	NA	NA	-56	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_12	10.2510162097879	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTCGTTGTCTTCTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	125968798	125962998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_125963214_125963367_125963473_125963569_125963633_125963730_125963794_125967047_125967143_125967217_125967279_125967357_125967388_125967470_125967536_125967666_125967755_125967973_125968009_125968113_125968142_125968319_125968577_125968680
transcript_86448.nic	chr7	-	1331	12	NIC	ENSMUSG00000030742.8	novel	1235	12	NA	NA	-102	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_9	13.1689592452595	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTCGTTGTCTTCTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	125968844	125962998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_125963214_125963367_125963473_125963569_125963633_125963730_125963794_125967047_125967143_125967217_125967279_125967357_125967388_125967470_125967536_125967666_125967713_125967973_125968009_125968113_125968142_125968319
transcript_86450.known	chr7	-	1235	12	FSM	ENSMUSG00000030742.8	ENSMUST00000032997.8	1235	12	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_9	5.32264769756525	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTCGTTGTCTTCTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	125968706	125962998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_125963214_125963367_125963473_125963569_125963633_125963730_125963794_125967047_125967143_125967217_125967279_125967357_125967388_125967470_125967536_125967666_125967755_125967973_125968009_125968113_125968142_125968319
transcript_86456.known	chr7	-	1215	11	FSM	ENSMUSG00000030742.8	ENSMUST00000206793.2	1215	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	13.9071923837991	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTTGTCTTCTTTTTGTT	NA	False	NA	NA	False	AATAAA	-20	NA	125968713	125962995	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_125963214_125963367_125963473_125963569_125963633_125963730_125963794_125967047_125967143_125967217_125967279_125967470_125967536_125967666_125967755_125967973_125968009_125968113_125968142_125968319
transcript_86463.nic	chr7	-	2121	13	NIC	ENSMUSG00000030741.16	novel	2152	13	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_12	122.006830409886	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGACTGACTGCTTGTC	NA	False	NA	-6	True	AATAAA	-14	NA	125976603	125969238	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125971740_125971916_125972063_125972941_125973009_125973093_125973246_125974238_125974376_125975845_125975912_125976008_125976218_125976289
transcript_86466.known	chr7	-	2219	12	FSM	ENSMUSG00000030741.16	ENSMUST00000032994.15	2219	12	0	0	0	0	multi-exon	TRUE	canonical	3	348	junction_9	48.6508899292612	453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGACTGCTTGTCTCTCTGT	NA	False	NA	1	True	AATAAA	-21	NA	125976622	125969231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125971740_125971916_125972063_125972941_125973009_125973093_125973246_125974238_125974376_125975845_125975912_125976008
transcript_86467.known	chr7	-	3388	8	FSM	ENSMUSG00000030722.8	ENSMUST00000075671.5	3388	8	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_7	21.1920277655614	1150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGCTGGTTTCTGTCTTT	NA	False	NA	-6	True	AATAAA	-20	NA	125995909	125982025	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_125984312_125986573_125986684_125986783_125986929_125989557_125989745_125989834_125989916_125990442_125990567_125995113_125995187_125995527
transcript_8647.known	chr10	-	469	3	FSM	ENSMUSG00000063320.12	ENSMUST00000185168.8	469	3	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_2	174.5	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTTCATAACCATCTATG	NA	False	NA	84	True	NA	NA	NA	82459062	82455775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_82456052_82458541_82458659_82458986
transcript_86477.nic	chr7	-	583	3	ISM	ENSMUSG00000030722.8	ENSMUST00000075671.5	3388	8	-22	8435	-22	-6412	5prime_fragment	FALSE	canonical	3	215	junction_2	26	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATGGAAGAGTTTCCGT	NA	False	NA	14	True	NA	NA	NA	125995931	125990460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_125990567_125995113_125995187_125995527
transcript_86479.known	chr7	-	681	5	FSM	ENSMUSG00000030730.13	ENSMUST00000146973.2	681	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCTTGCTTCCTTATATC	NA	False	NA	NA	False	AATAAA	-14	NA	126046817	126045031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126045299_126046042_126046161_126046308_126046427_126046554_126046689_126046773
transcript_86480.known	chr7	+	2234	13	FSM	ENSMUSG00000030727.13	ENSMUST00000106407.9	2234	13	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_4	15.3541525327841	292	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTTGCCTTGTGCCTGC	NA	False	NA	12	True	AATAAA	-15	NA	126028237	126045073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_126028329_126028747_126028958_126034831_126034990_126037541_126037653_126037733_126038079_126039337_126039434_126039519_126039619_126041008_126041165_126043301_126043480_126043589_126043602_126043694_126043751_126043991_126044109_126044468
transcript_86485.known	chr7	+	1679	10	FSM	ENSMUSG00000073838.11	ENSMUST00000098048.6	1679	10	0	0	0	0	multi-exon	FALSE	canonical	3	611	junction_6	33.4490583749803	2594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGCTTGTCTTGTGTCTT	NA	False	NA	0	True	AATAAA	-17	NA	126086532	126089899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_126086663_126086759_126086955_126087431_126087599_126087821_126087927_126088008_126088174_126088291_126088425_126088507_126088613_126088723_126088876_126088963_126089084_126089492
transcript_86489.known	chr7	+	1754	9	FSM	ENSMUSG00000073838.11	ENSMUST00000106392.10	1754	9	0	0	0	0	multi-exon	FALSE	canonical	3	611	junction_6	24.9646625252576	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTCTTGTGTCTTCTGT	NA	False	NA	4	True	AATAAA	-21	NA	126086549	126089903	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_126086663_126086759_126086955_126087431_126087599_126087821_126087927_126088008_126088174_126088291_126088425_126088507_126088613_126088723_126089084_126089492
transcript_86497.nic	chr7	-	4018	22	NIC	ENSMUSG00000032637.16	novel	4023	22	NA	NA	16	0	intron_retention	FALSE	canonical	3	143	junction_21	199.099617268271	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTAACCTGCCTATGGGT	7258	False	NA	-7	True	NA	NA	NA	126101256	126090886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101124
transcript_86498.known	chr7	-	2745	22	FSM	ENSMUSG00000032637.16	ENSMUST00000166682.9	2745	22	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_21	274.001324127426	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCCTGGGGCTCCCCACCC	7024	False	NA	NA	False	NA	NA	NA	126101490	126092134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095819_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101401
transcript_86499.known	chr7	-	4023	22	FSM	ENSMUSG00000032637.16	ENSMUST00000167759.8	4023	22	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_12	243.863600773697	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTAACCTGCCTATGGGT	6928	False	NA	-7	True	NA	NA	NA	126101586	126090886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095819_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101467
transcript_86502.known	chr7	-	3853	23	FSM	ENSMUSG00000032637.16	ENSMUST00000040202.15	3853	23	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	278.170751413855	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTATGGGTTTGATTC	9414	False	NA	0	True	NA	NA	NA	126102609	126090879	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126091388_126091983_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095819_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126102071
transcript_86504.known	chr7	-	3383	21	FSM	ENSMUSG00000030738.12	ENSMUST00000032992.7	3383	21	0	0	0	0	multi-exon	FALSE	canonical	3	1924	junction_14	277.99846672239	1329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTGGAGTTTCTAAAGGT	NA	False	NA	NA	False	NA	NA	NA	126165583	126145626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
transcript_86505.known	chr7	-	926	7	FSM	ENSMUSG00000030738.12	ENSMUST00000180459.3	926	7	0	0	0	0	multi-exon	FALSE	canonical	3	1924	junction_1	232.710418522439	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGCCTCAAAGTTCCTTAA	NA	False	NA	22	True	AAAACA	-8	NA	126165530	126161760	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250
transcript_86507.nnic	chr7	-	1909	18	NNC	ENSMUSG00000030720.17	novel	3203	18	NA	NA	-141	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_17	50.8134521599864	66	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTTTGTGCAGTCTCTG	NA	False	NA	-2	True	AATAAA	-18	NA	126184099	126171257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126179964_126180037_126180817_126180915_126181935_126182015_126182171_126182269_126182474_126182620_126183345_126183453_126183991
transcript_8651.known	chr10	-	716	3	FSM	ENSMUSG00000063320.12	ENSMUST00000079648.12	716	3	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_2	73.5	2137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTACTATACATTCTTGG	NA	False	NA	0	True	NA	NA	NA	82459030	82455684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_82456052_82458541_82458659_82458798
transcript_86515.known	chr7	+	3685	4	FSM	ENSMUSG00000042759.13	ENSMUST00000039522.8	3685	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	1.69967317119759	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGGTAAGGACTGGAGG	NA	False	NA	NA	False	NA	NA	NA	126184113	126188284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_126184241_126184547_126186984_126187068_126187335_126187428
transcript_86516.known	chr7	-	1571	14	FSM	ENSMUSG00000030720.17	ENSMUST00000098036.9	1571	14	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_11	40.0146422904558	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTTTGTGCAGTCTCTG	NA	False	NA	-2	True	AATAAA	-18	NA	126182362	126171257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126180817_126180915_126181935_126182015_126182171
transcript_86517.known	chr7	-	2487	17	FSM	ENSMUSG00000030720.17	ENSMUST00000116269.9	2487	17	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_16	42.5708508694623	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACTGATTTCTTTCTTCA	NA	False	NA	NA	False	NA	NA	NA	126183452	126170571	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126179964_126180037_126180817_126180915_126181935_126182015_126182171_126182269_126182474_126182620_126183345
transcript_8652.known	chr10	-	406	3	FSM	ENSMUSG00000063320.12	ENSMUST00000183363.2	406	3	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_2	131	1880	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTAGGGGGCTCAATGGC	NA	False	NA	0	True	AGTAAA	-20	NA	82459024	82455859	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_82456052_82458541_82458659_82458927
transcript_86529.known	chr7	-	570	3	FSM	ENSMUSG00000030717.10	ENSMUST00000191192.2	570	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	1863	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAGCAACAATAAATCGTAC	NA	False	NA	-37	True	AATAAA	-18	NA	126224516	126222449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126222752_126224061_126224308_126224494
transcript_8653.known	chr10	-	586	2	FSM	ENSMUSG00000063320.12	ENSMUST00000176200.8	586	2	0	0	0	0	multi-exon	FALSE	canonical	3	449	junction_1	0	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTACTATACATTCTTGG	NA	False	NA	0	True	NA	NA	NA	82458760	82455684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_82456052_82458541
transcript_86530.known	chr7	-	587	3	FSM	ENSMUSG00000030717.10	ENSMUST00000187609.2	587	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	1865.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTCTTTCCCACCTAAGT	NA	False	NA	NA	False	NA	NA	NA	126224647	126222613	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126222752_126224061_126224358_126224494
transcript_86531.known	chr7	-	829	3	FSM	ENSMUSG00000030717.10	ENSMUST00000032961.4	829	3	0	0	0	0	multi-exon	FALSE	canonical	3	3716	junction_2	16	13210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTTGGCGTGTGTTGTGT	NA	False	NA	-8	True	AATAAA	-16	NA	126224848	126222420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126222752_126224061_126224206_126224494
transcript_86536.known	chr7	-	1052	1	FSM	ENSMUSG00000066175.3	ENSMUST00000187458.2	1052	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATAATTACATATTGTTA	NA	False	NA	NA	False	TTTAAA	-2	NA	126248766	126247714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126247700_126248800
transcript_86537.known	chr7	+	1312	10	FSM	ENSMUSG00000030714.15	ENSMUST00000032956.10	1312	10	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_3	31.8433666561813	732	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGTTTGTACTTTAGGT	111	False	NA	NA	False	AATACA	-18	NA	126248480	126272097	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_126248650_126260223_126260321_126263100_126263177_126264087_126264161_126269801_126269867_126270709_126270840_126270905_126271053_126271209_126271246_126271327_126271491_126271741
transcript_86538.known	chr7	+	416	3	FSM	ENSMUSG00000030714.15	ENSMUST00000123382.2	416	3	0	0	0	0	multi-exon	FALSE	canonical	3	424	junction_2	10	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTCTCCTGGGCCTCAC	NA	False	NA	33	True	AATAAA	-16	NA	126271202	126271951	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_126271246_126271327_126271491_126271741
transcript_86539.known	chr7	-	1660	11	FSM	ENSMUSG00000030707.16	ENSMUST00000032949.14	1660	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	5.95315042645489	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCAGACTCCGGTGAACT	NA	False	NA	NA	False	AATAAA	-21	NA	126303988	126298944	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126299158_126299428_126299645_126299755_126299814_126299911_126300058_126300163_126300269_126300461_126300582_126300689_126300875_126300961_126301092_126301177_126301301_126302147_126302347_126303823
transcript_86541.known	chr7	-	1390	5	FSM	ENSMUSG00000059772.13	ENSMUST00000142337.7	1390	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_4	31.8276609256791	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCTGGCTGAGACAGTTT	5047	False	NA	NA	False	NA	NA	NA	126294896	126290289	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126290828_126290910_126290996_126291099_126291228_126291492_126291832_126294596
transcript_86546.known	chr7	-	602	4	FSM	ENSMUSG00000030707.16	ENSMUST00000133718.8	602	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0.942809041582063	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGACAGCGCTCGCAGAAG	NA	False	NA	NA	False	NA	NA	NA	126300399	126299482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126299645_126299755_126299814_126299911_126300058_126300163
transcript_8655.known	chr10	+	2959	10	FSM	ENSMUSG00000034674.19	ENSMUST00000092266.11	2959	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	369.308195427446	1336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTTAGTATACAGGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	82465661	82486158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_82465774_82474534_82474711_82477149_82477392_82477854_82477925_82480003_82480140_82480284_82480368_82480448_82480544_82483055_82483228_82483786_82483913_82484411
transcript_86550.known	chr7	+	333	3	FSM	ENSMUSG00000047721.9	ENSMUST00000052145.6	333	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1142	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCTGGTCTCAGTGTGC	1141	False	NA	18	True	ATTAAA	-13	NA	126295137	126295865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_126295272_126295392_126295453_126295726
transcript_86553.known	chr7	+	1013	2	FSM	ENSMUSG00000047721.9	ENSMUST00000144571.2	1013	2	0	0	0	0	multi-exon	FALSE	canonical	3	2284	junction_1	0	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGGCCCAGCTGGTCTCA	576	False	NA	12	True	ATTAAA	-7	NA	126294572	126295859	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_126295453_126295726
transcript_86554.known	chr7	+	642	2	FSM	ENSMUSG00000047721.9	ENSMUST00000106369.2	642	2	0	0	0	0	multi-exon	FALSE	canonical	3	2580	junction_1	0	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTCTCAGTGTGCTGTT	1148	False	NA	22	True	ATTAAA	-17	NA	126295144	126295869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_126295272_126295354
transcript_86557.known	chr7	+	1800	9	FSM	ENSMUSG00000063065.14	ENSMUST00000057669.16	1800	9	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_5	18.155147341732	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTCTGTCTGTGTAT	5216	False	NA	31	True	TATAAA	-24	NA	126358772	126364991	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_126358991_126359902_126360086_126362206_126362397_126362569_126362687_126362912_126363028_126363405_126363538_126363705_126363816_126363894_126364050_126364411
transcript_86558.known	chr7	+	436	2	FSM	ENSMUSG00000063065.14	ENSMUST00000206875.2	436	2	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_1	0	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCCCAGCAAAGTAACTTT	5275	False	NA	NA	False	NA	NA	NA	126358831	126360179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_126358991_126359902
transcript_86559.known	chr7	+	1148	10	FSM	ENSMUSG00000030703.9	ENSMUST00000032944.9	1148	10	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_3	2.43938871112224	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTTCATGGAACAAGGG	NA	False	NA	12	True	AATAAA	-18	NA	126365505	126374817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_126365782_126366073_126366117_126366346_126366483_126366562_126366609_126366738_126366858_126366934_126367025_126367741_126367876_126370159_126370220_126370333_126370386_126374625
transcript_8656.known	chr10	+	3502	10	FSM	ENSMUSG00000034674.19	ENSMUST00000151390.8	3502	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	366.010456573289	819	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCGGCTAACTTGTTTCTA	NA	False	NA	NA	False	NA	NA	NA	82465692	82486633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_82465873_82474534_82474711_82477149_82477392_82477854_82477925_82480003_82480140_82480284_82480368_82480448_82480544_82483055_82483228_82483786_82483913_82484411
transcript_86564.known	chr7	+	606	3	FSM	ENSMUSG00000030703.9	ENSMUST00000205910.2	606	3	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	1.5	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCATGGAACAAGGGGTTG	NA	False	NA	16	True	AATAAA	-22	NA	126367691	126374821	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_126367876_126370159_126370386_126374625
transcript_86566.known	chr7	+	973	5	FSM	ENSMUSG00000042675.16	ENSMUST00000038614.12	973	5	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_2	12.73528562695	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCTGGCTCACATGGAAT	8221	False	NA	17	True	AATAAA	-18	NA	126376126	126379686	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_126376276_126376942_126377126_126377225_126377270_126377477_126377587_126379198
transcript_86569.known	chr7	+	829	5	FSM	ENSMUSG00000042675.16	ENSMUST00000206143.2	829	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	88.2623928975416	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCCTGGCTCACATGGAA	8265	False	NA	16	True	AATAAA	-17	NA	126376170	126379685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_126376276_126377041_126377126_126377225_126377270_126377477_126377587_126379198
transcript_86578.known	chr7	-	1359	9	FSM	ENSMUSG00000030697.8	ENSMUST00000032936.8	1359	9	0	0	0	0	multi-exon	FALSE	canonical	3	1828	junction_8	282.244574792856	7428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTAGGTTCTGTCAGGTTTG	5070	False	NA	NA	False	AATAAA	-15	NA	126391668	126385037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126385464_126385543_126385734_126386391_126386519_126386608_126386783_126387288_126387391_126387555_126387607_126388195_126388248_126391232_126391396_126391594
transcript_86579.known	chr7	-	1400	8	FSM	ENSMUSG00000030697.8	ENSMUST00000206570.2	1400	8	0	0	0	0	multi-exon	FALSE	canonical	3	2424	junction_1	142.291307979548	1736	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTAGGTTCTGTCAGGTT	5226	False	NA	NA	False	AATAAA	-13	NA	126391512	126385039	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126385464_126385543_126385734_126386391_126386519_126386608_126386783_126387288_126387391_126387555_126387607_126388195_126388248_126391232
transcript_86580.known	chr7	-	1747	2	FSM	ENSMUSG00000030697.8	ENSMUST00000205879.2	1747	2	0	0	0	0	multi-exon	FALSE	canonical	3	1828	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAAAAGAAAAAG	5084	False	NA	NA	False	NA	NA	NA	126391654	126389708	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126391396_126391594
transcript_8659.nic	chr10	+	497	3	ISM	ENSMUSG00000034674.19	ENSMUST00000151390.8	3502	10	-23	9366	8	111	5prime_fragment	FALSE	canonical	3	526	junction_2	75	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGAAAATCACAGACGCGT	NA	False	NA	NA	False	AAGAAA	-33	NA	82465669	82477267	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_82465873_82474534_82474711_82477149
transcript_86594.known	chr7	-	1460	9	FSM	ENSMUSG00000030695.17	ENSMUST00000106348.8	1460	9	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_8	6626.46755325754	3960	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTGTTCATGTCTTG	NA	False	NA	-4	True	AATAAA	-17	NA	126399619	126394406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126399459
transcript_8660.known	chr10	-	1240	10	FSM	ENSMUSG00000020251.15	ENSMUST00000065815.14	1240	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.314269680527354	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAATAAAATTTAAAA	NA	False	NA	NA	False	AATACA	-6	NA	82526451	82488376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_82488583_82488701_82488815_82490515_82490683_82495346_82495460_82496563_82496649_82497999_82498118_82500458_82500631_82506111_82506205_82507890_82507935_82526322
transcript_86605.known	chr7	+	2328	5	FSM	ENSMUSG00000058966.14	ENSMUST00000079423.7	2328	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.4142135623731	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAAGACCCTTTGGTCCAG	NA	False	NA	NA	False	AATAAA	-20	NA	126422474	126429386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_126423385_126424182_126424267_126426637_126426873_126427972_126428069_126428383
transcript_86606.known	chr7	-	741	4	FSM	ENSMUSG00000114515.3	ENSMUST00000207534.3	741	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	6.97614984548545	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGAGCTATGGATGGCAG	8434	False	NA	NA	False	NA	NA	NA	126408280	126399961	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126400167_126406855_126407012_126407267_126407409_126408041
transcript_8661.known	chr10	+	3422	15	FSM	ENSMUSG00000020246.14	ENSMUST00000020478.14	3422	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_14	23.6837152353033	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGGTGGTATTATTTCTT	NA	False	NA	NA	False	AATAAA	-23	NA	82534840	82578262	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_82535141_82536752_82536902_82538276_82538438_82544842_82545052_82545797_82545883_82547668_82547776_82547883_82548073_82559452_82559621_82560177_82560231_82564086_82564262_82568436_82568511_82570183_82570316_82574112_82574299_82574813_82575100_82577114
transcript_86610.known	chr7	-	1511	9	FSM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	0	0	0	0	multi-exon	FALSE	canonical	3	19253	junction_4	564.678448322583	31005	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	NA	False	NA	-3	True	AATAAA	-18	NA	126398426	126394405	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
transcript_86611.known	chr7	-	1549	10	FSM	ENSMUSG00000030695.17	ENSMUST00000087566.11	1549	10	0	0	0	0	multi-exon	FALSE	canonical	3	862	junction_9	8041.23258932084	4415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGTTGTTCATGTCTT	NA	False	NA	-5	True	AATAAA	-16	NA	126398313	126394407	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126397145_126397299_126398216
transcript_8663.nic	chr10	+	2454	14	ISM	ENSMUSG00000020246.14	ENSMUST00000020478.14	3422	15	33	2950	33	-1917	5prime_fragment	FALSE	canonical	3	69	junction_7	9.81666256450355	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTATATGGATTCTTCCT	NA	False	NA	17	True	AATAAA	-26	NA	82534873	82575312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_82535141_82536752_82536902_82538276_82538438_82544842_82545052_82545797_82545883_82547668_82547776_82547883_82548073_82559452_82559621_82560177_82560231_82564086_82564262_82568436_82568511_82570183_82570316_82574112_82574299_82574813
transcript_86632.known	chr7	+	2766	7	FSM	ENSMUSG00000042606.10	ENSMUST00000037248.10	2766	7	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_2	39.0498257216199	246	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACACTCTCAGGCTCAGT	1476	False	NA	8	True	NA	NA	NA	126461143	126464549	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_126461689_126461771_126461893_126461989_126462099_126462340_126463423_126463491_126463658_126463734_126463834_126463905
transcript_86638.known	chr7	-	1840	7	FSM	ENSMUSG00000030689.16	ENSMUST00000106342.8	1840	7	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	388.334763945863	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGCTTGGATTTCT	9346	False	NA	1	True	ATTAAA	-31	NA	126460858	126450751	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126452164_126456397_126456515_126456847_126456895_126457045_126457125_126460411_126460465_126460647_126460719_126460797
transcript_86654.known	chr7	-	1973	7	FSM	ENSMUSG00000030689.16	ENSMUST00000106343.3	1973	7	0	0	0	0	multi-exon	FALSE	canonical	3	695	junction_1	102.030496530313	619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATGTTTTGTGCTTGGA	9194	False	NA	-4	True	ATTAAA	-26	NA	126461010	126450756	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126452164_126456397_126456515_126456847_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460876
transcript_86655.known	chr7	-	1944	5	FSM	ENSMUSG00000030689.16	ENSMUST00000050833.14	1944	5	0	0	0	0	multi-exon	FALSE	canonical	3	695	junction_1	87.2969071617088	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGCTTGGATTTCT	9569	False	NA	1	True	ATTAAA	-31	NA	126460635	126450751	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126452164_126456397_126456515_126456847_126456960_126457045_126457125_126460411
transcript_86656.known	chr7	-	1741	7	FSM	ENSMUSG00000030689.16	ENSMUST00000125624.8	1741	7	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_6	315.786012286098	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTGTCCTTTCCTCTA	9917	False	NA	-4	True	ATTAAA	-15	NA	126461549	126451604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126452164_126456397_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460876_126461190_126461445
transcript_86657.known	chr7	-	379	4	FSM	ENSMUSG00000030689.16	ENSMUST00000129812.2	379	4	0	0	0	0	multi-exon	FALSE	canonical	3	847	junction_2	65.4896090146283	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGACTTCTGGGGCCCCC	9384	False	NA	NA	False	NA	NA	NA	126460820	126456885	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126456960_126457045_126457125_126460411_126460465_126460647
transcript_86660.known	chr7	-	941	6	FSM	ENSMUSG00000060538.15	ENSMUST00000032926.12	941	6	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_5	14.8781719307178	612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTGTGTAAGGTACTTAC	6219	False	NA	-2	True	AATAAA	-14	NA	126497448	126485391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126485488_126488062_126488233_126490774_126491005_126495920_126496111_126496197_126496400_126497395
transcript_86670.known	chr7	-	915	6	FSM	ENSMUSG00000060538.15	ENSMUST00000121532.8	915	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	16.451139778143	486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTGTGTAAGGTACTTAC	6242	False	NA	-2	True	AATAAA	-14	NA	126497425	126485391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126485488_126488062_126488233_126490774_126491005_126495920_126496111_126496197_126496397_126497395
transcript_86671.known	chr7	-	1100	3	FSM	ENSMUSG00000060538.15	ENSMUST00000145307.2	1100	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	34	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAACAAAAAACA	6214	False	NA	NA	False	NA	NA	NA	126497453	126490152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126491005_126495920_126496111_126497395
transcript_86673.known	chr7	-	1647	3	FSM	ENSMUSG00000046378.12	ENSMUST00000106340.8	1647	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATCACGATAGCAGAGCTG	NA	False	NA	NA	False	AATAAA	-12	NA	126548331	126544738	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126545383_126545888_126546003_126547442
transcript_86674.known	chr7	+	1676	6	FSM	ENSMUSG00000030685.6	ENSMUST00000032924.6	1676	6	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_2	8.49470423263812	211	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGACTCTCGGGTGAG	NA	False	NA	25	True	AATAAA	-17	NA	126528050	126544803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_126528471_126529804_126529975_126540504_126540595_126540682_126540736_126541318_126541515_126544056
transcript_86678.known	chr7	+	1838	6	FSM	ENSMUSG00000030682.5	ENSMUST00000206794.2	1838	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	162.28739938763	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTTTCTCAGAGCATG	NA	False	NA	22	True	NA	NA	NA	126575607	126579671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_126575979_126576089_126576225_126577433_126577588_126578037_126578169_126578493_126578576_126578706
transcript_86683.known	chr7	-	2837	15	FSM	ENSMUSG00000030681.19	ENSMUST00000165096.9	2837	15	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_9	19.4401226165613	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTTTTCCCTCTTAT	NA	False	NA	0	True	AATAAA	-21	NA	126613793	126586031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126586287_126586648_126586838_126587489_126587617_126587997_126588115_126588717_126589105_126591446_126591645_126591725_126591971_126592691_126592974_126594907_126595145_126595409_126595505_126597397_126597530_126597644_126597769_126600651_126600848_126600980_126601131_126613690
transcript_86688.nic	chr7	-	788	4	ISM	ENSMUSG00000030681.19	ENSMUST00000165096.9	2837	15	25579	0	22823	0	3prime_fragment	FALSE	canonical	3	125	junction_3	4.92160768674447	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTTTTCCCTCTTAT	6810	False	NA	0	True	AATAAA	-21	NA	126588214	126586031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_126586287_126586648_126586838_126587489_126587617_126587997
transcript_86692.known	chr7	-	422	3	FSM	ENSMUSG00000030680.7	ENSMUST00000162069.3	422	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	148	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGGCTCCCAGCGCAGT	9462	False	NA	-144	True	NA	NA	NA	126616492	126614346	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126614642_126615371_126615455_126616448
transcript_86694.known	chr7	-	2650	6	FSM	ENSMUSG00000030678.8	ENSMUST00000205568.2	2650	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	289.408085581588	574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGAGTTCCTAAGTTAT	256	False	NA	-27	True	AATAAA	-18	NA	126625698	126621301	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126622341_126622653_126622879_126623615_126623788_126624047_126624112_126624475_126625327_126625399
transcript_86696.nnic	chr7	-	2171	4	NNC	ENSMUSG00000030678.8	novel	2347	5	NA	NA	-477	0	intron_retention	FALSE	canonical	3	387	junction_1	176.98775852207	574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTCTGAGTTCCTAAG	1173	False	NA	-31	True	AATAAA	-14	NA	126624781	126621305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_126622341_126622648_126622879_126623615_126623788_126624047
transcript_86697.known	chr7	-	2347	5	FSM	ENSMUSG00000030678.8	ENSMUST00000032916.6	2347	5	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_1	136.928813622261	577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTCTGAGTTCCTAAG	330	False	NA	-31	True	AATAAA	-14	NA	126625624	126621305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126622341_126623615_126623788_126624047_126624112_126624475_126625327_126625399
transcript_86698.known	chr7	-	548	3	FSM	ENSMUSG00000030678.8	ENSMUST00000206953.2	548	3	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_1	166.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCTCTCAGCCACTTCC	1650	False	NA	NA	False	NA	NA	NA	126624304	126622221	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126622341_126623615_126623788_126624047
transcript_86701.known	chr7	-	2115	14	FSM	ENSMUSG00000030677.9	ENSMUST00000032915.8	2115	14	0	0	0	0	multi-exon	FALSE	canonical	3	689	junction_8	49.8885147636753	863	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGAGCCTGGTTTTTGA	7925	False	NA	-6	True	AATACA	-13	NA	126641643	126626902	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126627013_126627102_126627163_126627241_126627455_126628086_126628149_126628506_126628673_126630100_126630270_126631800_126631937_126632053_126632208_126632333_126632565_126632640_126632851_126633049_126633205_126633295_126633424_126634919_126635113_126641515
transcript_86702.known	chr7	-	295	2	FSM	ENSMUSG00000030677.9	ENSMUST00000206655.2	295	2	0	0	0	0	multi-exon	FALSE	canonical	3	759	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTGAGCCTGGTTTTTG	NA	False	NA	-7	True	AATACA	-12	NA	126627288	126626903	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126627013_126627102
transcript_86704.known	chr7	+	1932	2	FSM	ENSMUSG00000045165.7	ENSMUST00000056288.7	1932	2	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	0	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTTTGTATGACCTCTG	NA	False	NA	6	True	NA	NA	NA	126690530	126693158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_126690645_126691340
transcript_86705.known	chr7	-	2050	4	FSM	ENSMUSG00000030674.6	ENSMUST00000032912.6	2050	4	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_2	9.46337971105226	214	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCCCTGCATGGCACCTC	NA	False	NA	NA	False	NA	NA	NA	126721398	126706285	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126707414_126707505_126707638_126707880_126708417_126721144
transcript_8671.known	chr10	+	2887	5	FSM	ENSMUSG00000020246.14	ENSMUST00000160681.2	2887	5	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	8.1967981553775	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCCAAATTGTATTTTTT	NA	False	NA	10	True	AATAAA	-18	NA	82564182	82577229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_82564262_82568436_82568511_82570183_82570316_82574112_82574299_82574813
transcript_86716.known	chr7	-	1309	7	FSM	ENSMUSG00000042502.11	ENSMUST00000035771.5	1309	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_6	224.819680830858	541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCCTTTTGGCTTCAC	5583	False	NA	-4	True	AATAAA	-40	NA	126795047	126792829	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532_126794640_126794958
transcript_86717.known	chr7	-	2912	7	FSM	ENSMUSG00000042502.11	ENSMUST00000205316.2	2912	7	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_6	218.502034061216	727	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTGTGGTAATTTAATAAA	5471	False	NA	-1	True	NA	NA	NA	126795159	126791196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532_126794640_126795100
transcript_86732.known	chr7	-	3614	9	FSM	ENSMUSG00000042492.13	ENSMUST00000120705.3	3614	9	0	0	0	0	multi-exon	FALSE	canonical	3	338	junction_3	35.2311563108564	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGTGGTCCAGCTCCTTC	1542	False	NA	NA	False	AGTAAA	-27	NA	126807640	126796630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126798385_126798469_126798625_126798904_126799095_126799266_126799333_126799456_126799572_126802343_126802451_126802545_126802654_126802912_126803013_126806621
transcript_86740.known	chr7	+	653	7	FSM	ENSMUSG00000030672.13	ENSMUST00000206772.2	653	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	719.114598346853	5416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCAATTTCAGTGTG	251	False	NA	32	True	AATAAA	-24	NA	126808070	126813460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_126808124_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
transcript_86750.known	chr7	+	766	7	FSM	ENSMUSG00000030672.13	ENSMUST00000032910.13	766	7	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	683.213892000318	6311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGTGTGTTCATGCGCA	2960	False	NA	42	True	AATAAA	-34	NA	126810779	126813470	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_126810936_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
transcript_86751.known	chr7	+	268	4	FSM	ENSMUSG00000030672.13	ENSMUST00000127710.3	268	4	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_1	689.231617253752	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCCTGACCATGTTTG	4031	False	NA	NA	False	NA	NA	NA	126811850	126812659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_126811880_126812032_126812126_126812336_126812413_126812589
transcript_86752.known	chr7	+	165	2	FSM	ENSMUSG00000030672.13	ENSMUST00000143222.2	165	2	0	0	0	0	multi-exon	FALSE	canonical	3	1809	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAGGAAGCCAGTGGGCC	4466	False	NA	NA	False	NA	NA	NA	126812285	126812627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_126812413_126812589
transcript_86753.known	chr7	+	285	2	FSM	ENSMUSG00000030672.13	ENSMUST00000139613.2	285	2	0	0	0	0	multi-exon	FALSE	canonical	3	1768	junction_1	0	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGTGGCAATTTCAGTGT	391	False	NA	31	True	AATAAA	-23	NA	126813067	126813459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_126813156_126813262
transcript_86766.known	chr7	+	3342	2	FSM	ENSMUSG00000045598.11	ENSMUST00000106312.4	3342	2	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_1	0	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACATTGTCATAGACAACT	8108	False	NA	0	True	AATAAA	-1	NA	126832232	126837351	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_126832659_126834435
transcript_86767.known	chr7	+	3043	2	FSM	ENSMUSG00000045598.11	ENSMUST00000056232.7	3043	2	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	0	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTGTGGTTATGTGTA	8302	False	NA	28	True	AATAAA	-18	NA	126832426	126837215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_126832690_126834435
transcript_86768.known	chr7	-	713	1	FSM	ENSMUSG00000000486.14	ENSMUST00000205570.2	713	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCGTCTGTCCCTTGAGTG	NA	False	NA	NA	False	AATAAA	-30	NA	126832302	126831589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126831600_126832300
transcript_86769.known	chr7	+	827	1	FSM	ENSMUSG00000045598.11	ENSMUST00000205367.2	827	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	100	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAGAAAAAAAAAAA	8341	False	NA	NA	False	NA	NA	NA	126832465	126833292	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_126832500_126833300
transcript_8677.known	chr10	-	2554	8	FSM	ENSMUSG00000020248.19	ENSMUST00000130911.8	2554	8	0	0	0	0	multi-exon	FALSE	canonical	3	756	junction_4	63.4932103071032	1545	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCGCCTTGCGTGTGGGT	NA	False	NA	-4	True	AATAAA	-43	NA	82599978	82584534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_82586282_82586571_82586652_82587217_82587300_82588240_82588439_82590798_82590930_82592535_82592630_82597666_82597748_82599837
transcript_86770.known	chr7	-	1486	11	FSM	ENSMUSG00000000486.14	ENSMUST00000106314.8	1486	11	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_10	48.9043965303734	1183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTCCCGCCTTCCCCCA	NA	False	NA	-22	True	AATAAA	-3	NA	126817670	126813633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126814017_126814120_126814212_126814452_126814619_126814830_126814928_126815039_126815142_126815861_126815980_126816072_126816208_126816790_126816915_126817142_126817230_126817312_126817404_126817578
transcript_86771.known	chr7	-	575	2	FSM	ENSMUSG00000000486.14	ENSMUST00000131208.2	575	2	0	0	0	0	multi-exon	FALSE	canonical	3	372	junction_1	0	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAGCTGCCGGAGTCTTC	NA	False	NA	-7	True	AATAAA	-18	NA	126814297	126813618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126814017_126814120
transcript_86781.known	chr7	-	676	3	FSM	ENSMUSG00000042462.5	ENSMUST00000035276.5	676	3	0	0	0	0	multi-exon	FALSE	canonical	3	3852	junction_1	65	24193	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTCGATTTTTCTTGAGT	2490	False	NA	-1	True	AATAAA	-18	NA	126859881	126856130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126856509_126858529_126858641_126859694
transcript_86782.known	chr7	-	2177	1	FSM	ENSMUSG00000049091.8	ENSMUST00000082428.6	2177	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	656	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGGCTAATGTTTGGTT	2841	False	NA	-8	True	AATAAA	-19	NA	126873227	126871050	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126871000_126873200
transcript_86783.known	chr7	-	342	1	FSM	ENSMUSG00000090460.4	ENSMUST00000172206.4	342	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	224	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTGCTTTTGTTAAGTT	NA	False	NA	NA	False	GGGGCT	-15	NA	126885557	126885215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126885200_126885600
transcript_86784.known	chr7	-	2356	2	FSM	ENSMUSG00000047371.8	ENSMUST00000060783.7	2356	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATTCGTCCTTAAGATGT	5321	False	NA	-1	True	AATAAA	-16	NA	126944595	126941966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126944048_126944320
transcript_86785.known	chr7	-	2513	2	FSM	ENSMUSG00000047371.8	ENSMUST00000205266.2	2513	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATTCGTCCTTAAGATGT	5155	False	NA	-1	True	AATAAA	-16	NA	126944761	126941966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126944039_126944320
transcript_86786.known	chr7	-	2684	3	FSM	ENSMUSG00000054381.6	ENSMUST00000067425.6	2684	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	4	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATGATTTCTGCTCCTC	915	False	NA	NA	False	NA	NA	NA	126975222	126971708	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_126973871_126974560_126974675_126974814
transcript_86789.known	chr7	-	2508	3	FSM	ENSMUSG00000045757.7	ENSMUST00000059199.7	2508	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	2.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATGATTTCTGCTCCTC	8601	False	NA	NA	False	AATAAA	-19	NA	127005994	127002839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_127004832_127005337_127005452_127005592
transcript_86794.known	chr7	-	1302	4	FSM	ENSMUSG00000045251.14	ENSMUST00000148483.8	1302	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	18.7794213613377	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	-1	True	NA	-4	True	ATTAAA	-17	NA	127021211	127018138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_127018814_127019181_127019278_127020576_127020691_127020794
transcript_86795.nnic	chr7	-	1486	4	NNC	ENSMUSG00000045251.14	novel	1302	4	NA	NA	-183	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	22.553639765383	332	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAGTGTTTTGTGTTAA	6701	False	NA	-6	True	ATTAAA	-15	NA	127021423	127018140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_127018814_127019181_127019278_127020576_127020691_127020820
transcript_86796.nic	chr7	-	1151	4	NIC	ENSMUSG00000045251.14	novel	1302	4	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_2	9.62635271879577	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAGTGTTTTGTGTTAA	6876	False	NA	-6	True	ATTAAA	-15	NA	127021248	127018140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_127018814_127019181_127019278_127020576_127020691_127020980
transcript_86800.nic	chr7	-	1214	3	NIC	ENSMUSG00000045251.14	novel	1302	4	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_2	12.5	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	6905	False	NA	-4	True	ATTAAA	-17	NA	127021219	127018138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_127018814_127020576_127020691_127020794
transcript_86801.nnic	chr7	-	1201	3	NNC	ENSMUSG00000045251.14	novel	1302	4	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	17	334	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	6892	False	NA	-4	True	ATTAAA	-17	NA	127021232	127018138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_127018814_127020576_127020691_127020820
transcript_86802.known	chr7	-	1015	3	FSM	ENSMUSG00000045251.14	ENSMUST00000106300.2	1015	3	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	2.5	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	4	True	NA	-4	True	ATTAAA	-17	NA	127021206	127018138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_127018814_127020576_127020691_127020980
transcript_86803.nnic	chr7	-	1169	3	NNC	ENSMUSG00000045251.14	novel	492	3	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	27.5	322	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAGTGTTTTGTGTTAA	6904	False	NA	-6	True	ATTAAA	-15	NA	127021220	127018140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_127018814_127019181_127019278_127020820
transcript_86804.nnic	chr7	-	1020	3	NIC	ENSMUSG00000045251.14	novel	492	3	NA	NA	9	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	25.5	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAGTGTTTTGTGTTAA	6893	False	NA	-6	True	ATTAAA	-15	NA	127021231	127018140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_127018814_127019181_127019278_127020980
transcript_86806.known	chr7	-	338	2	FSM	ENSMUSG00000045251.14	ENSMUST00000126756.2	338	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCTGGTGAGCGACCCTT	7102	False	NA	NA	False	NA	NA	NA	127021022	127018517	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_127018814_127020980
transcript_86807.known	chr7	-	1298	2	FSM	ENSMUSG00000045251.14	ENSMUST00000136123.8	1298	2	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	0	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	6925	False	NA	-4	True	ATTAAA	-17	NA	127021199	127018138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_127018814_127020576
transcript_86808.known	chr7	-	2732	2	FSM	ENSMUSG00000045251.14	ENSMUST00000135886.2	2732	2	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAGTGTTTTGTGTTAA	6884	False	NA	-6	True	ATTAAA	-15	NA	127021240	127018140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_127018814_127019181
transcript_86809.known	chr7	+	2175	13	FSM	ENSMUSG00000030822.16	ENSMUST00000106292.8	2175	13	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_1	75.4609446446748	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGACTCCTTTGTGCC	NA	False	NA	9	True	TATAAA	-14	NA	127069542	127075931	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127069596_127070156_127070292_127071077_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127074999_127075078_127075171_127075393_127075466_127075555
transcript_86820.nnic	chr7	-	1909	4	NNC	ENSMUSG00000048921.12	novel	1417	4	NA	NA	-34	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	24.5537958142705	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGTCTTAAAATAATATGG	4323	False	NA	0	True	ATTAAA	-15	NA	127048364	127042923	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_127043898_127044027_127044310_127047534_127047649_127047825
transcript_86821.known	chr7	-	3621	3	FSM	ENSMUSG00000048921.12	ENSMUST00000053392.11	3621	3	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	4.5	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCTGCTCCTTCTGGAA	4357	False	NA	NA	False	ATTAAA	-14	NA	127048330	127041307	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_127044310_127047534_127047649_127047825
transcript_86822.known	chr7	+	1142	2	FSM	ENSMUSG00000086502.2	ENSMUST00000147487.2	1142	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTCTTTTTCTAAAGTGA	899	False	NA	NA	False	TATAAA	-29	NA	127047807	127056357	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127048744_127056151
transcript_86823.known	chr7	+	1778	2	FSM	ENSMUSG00000086502.2	ENSMUST00000144796.2	1778	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAAAGGGTGCCAAGTA	903	False	NA	NA	False	NA	NA	NA	127047811	127059532	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127048744_127058686
transcript_86824.nic	chr7	-	1547	2	ISM	ENSMUSG00000048921.12	ENSMUST00000106299.2	1417	4	-199	3714	-34	-3714	5prime_fragment	FALSE	canonical	3	56	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGGATGTACCACAGGCC	4323	False	NA	NA	False	NA	NA	NA	127048364	127046640	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_127047649_127047825
transcript_86826.known	chr7	+	1656	1	FSM	ENSMUSG00000030822.16	ENSMUST00000206118.2	1656	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAGAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	127070620	127072276	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127070600_127072300
transcript_86827.known	chr7	+	2402	11	FSM	ENSMUSG00000030822.16	ENSMUST00000033095.10	2402	11	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_10	17.7132718603876	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTGACTCCTTTGTGC	NA	False	NA	8	True	TATAAA	-13	NA	127070661	127075930	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127074999_127075078_127075171_127075393_127075466_127075555
transcript_86829.nic	chr7	+	2077	10	NIC	ENSMUSG00000053877.13	novel	2048	10	NA	NA	-25	1	intron_retention	FALSE	canonical	3	20	junction_9	13.2282899242868	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCAGTTATTGAGTATTA	NA	False	NA	NA	False	AATAAA	-20	NA	127111129	127128495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_127111511_127113336_127113413_127115113_127115374_127118752_127119005_127120647_127120834_127121160_127121302_127124464_127124688_127124802_127125078_127127567_127127662_127128306
transcript_86830.known	chr7	+	2048	10	FSM	ENSMUSG00000053877.13	ENSMUST00000188124.7	2048	10	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_9	13.723009424114	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTCAGTTATTGAGTATT	NA	False	NA	NA	False	AATAAA	-19	NA	127111154	127128494	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127111511_127113336_127113413_127115113_127115374_127118752_127119005_127120647_127120834_127121160_127121302_127124464_127124688_127124802_127125078_127127567_127127662_127128309
transcript_86834.known	chr7	+	2904	8	FSM	ENSMUSG00000053877.13	ENSMUST00000185401.7	2904	8	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_5	6.55588223176215	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAATTTATGCTCT	NA	False	NA	NA	False	TTTAAA	-18	NA	127111154	127126212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127111511_127113336_127113413_127115113_127115374_127118752_127119005_127120647_127120834_127121160_127121302_127124464_127124688_127124802
transcript_86836.nic	chr7	+	1873	4	ISM	ENSMUSG00000053877.13	ENSMUST00000189136.7	1960	6	-44	2101	-25	767	5prime_fragment	FALSE	canonical	3	58	junction_2	2.05480466765633	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTCTTCTTTTTTAATT	NA	False	NA	NA	False	AATAAA	-17	NA	127111129	127119908	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_127111511_127113336_127113413_127115113_127115374_127118752
transcript_86839.known	chr7	+	1054	3	FSM	ENSMUSG00000106715.4	ENSMUST00000084563.11	1054	3	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	1.5	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTGTCTAATTGCTCTTT	NA	False	NA	17	True	AATAAA	-20	NA	127160561	127164442	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127160958_127162293_127162465_127163955
transcript_86840.known	chr7	-	2432	1	FSM	ENSMUSG00000101225.2	ENSMUST00000185351.2	2432	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAATTCCTA	10001	False	NA	NA	False	AATAAA	-35	NA	127112041	127109609	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_127109600_127112000
transcript_86841.nic	chr7	+	1585	10	NIC	ENSMUSG00000030815.12	novel	1570	10	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	38.5313724991294	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCAGTGCCATGTCTGCT	NA	False	NA	19	True	AATAAA	-20	NA	127172489	127182472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_127172629_127173025_127173139_127176706_127176819_127177146_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
transcript_86843.known	chr7	+	1570	10	FSM	ENSMUSG00000030815.12	ENSMUST00000033086.8	1570	10	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_3	31.2018517968975	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCATGTCTGCTGTCTAGT	NA	False	NA	26	True	AATAAA	-27	NA	127172575	127182479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127172629_127173025_127173139_127176706_127176883_127177146_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
transcript_86848.nic	chr7	+	1530	9	NIC	ENSMUSG00000030815.12	novel	1570	10	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_3	33.5016324229134	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCAGTGCCATGTCTGCT	NA	False	NA	19	True	AATAAA	-20	NA	127172489	127182472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_127172629_127173025_127173139_127176706_127176819_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
transcript_86849.nic	chr7	+	1572	9	NIC	ENSMUSG00000030815.12	novel	1570	10	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_3	38.180492401225	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCAGTGCCATGTCTGCT	NA	False	NA	19	True	AATAAA	-20	NA	127172489	127182472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_127172629_127173025_127173139_127176706_127176861_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
transcript_86852.known	chr7	-	2536	9	FSM	ENSMUSG00000057176.5	ENSMUST00000072155.5	2536	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	3.80788655293195	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCATGCGTAGCATCAGG	8286	False	NA	NA	False	AGTAAA	-18	NA	127187767	127181554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_127182762_127183992_127184086_127184164_127184226_127184316_127184434_127184625_127184697_127185446_127185617_127185994_127186061_127186735_127186768_127187048
transcript_86866.known	chr7	+	1918	3	FSM	ENSMUSG00000030815.12	ENSMUST00000151908.8	1918	3	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	14	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127172575	127178458	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127172629_127173025_127173139_127176706
transcript_86867.known	chr7	+	1426	3	FSM	ENSMUSG00000030815.12	ENSMUST00000129457.2	1426	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	70	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAAAAATTCATGAAGC	NA	False	NA	NA	False	NA	NA	NA	127172511	127177793	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127172629_127172916_127173139_127176706
transcript_86868.known	chr7	-	1036	2	FSM	ENSMUSG00000057176.5	ENSMUST00000206220.2	1036	2	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGACTGGATTCTAGACCA	8501	False	NA	NA	False	AATAAA	-20	NA	127187552	127186235	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_127186768_127187048
transcript_86869.known	chr7	+	1840	9	FSM	ENSMUSG00000030815.12	ENSMUST00000121004.3	1840	9	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	32.8954309137303	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCATGTCTGCTGTCTA	NA	False	NA	24	True	AATAAA	-25	NA	127172700	127182477	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127173139_127176706_127176883_127177146_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
transcript_86870.known	chr7	+	1722	9	FSM	ENSMUSG00000030815.12	ENSMUST00000154891.8	1722	9	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	40.5768945953236	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCATGTCTGCTGTCTA	NA	False	NA	24	True	AATAAA	-25	NA	127172754	127182477	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127173139_127176706_127176819_127177146_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
transcript_86871.known	chr7	+	5279	20	FSM	ENSMUSG00000030816.9	ENSMUST00000205694.2	5279	20	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_5	49.1177002358039	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGCTTTCTTCTCTC	NA	False	NA	NA	False	AAAACA	-27	NA	127187938	127203971	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127187984_127188096_127188301_127188683_127188852_127188928_127189071_127189678_127189886_127190486_127190609_127190704_127190852_127190934_127191010_127191760_127191881_127191968_127192149_127193778_127193915_127195017_127195140_127195226_127195655_127195736_127195855_127195975_127196126_127196300_127196514_127196588_127196715_127199477_127199619_127199696_127199799_127201638
transcript_86873.known	chr7	-	1132	6	FSM	ENSMUSG00000030814.18	ENSMUST00000061468.9	1132	6	0	0	0	0	multi-exon	FALSE	canonical	3	471	junction_4	29.8971570554794	259	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCATGTCATTTCC	NA	False	NA	NA	False	AATAAA	-14	NA	127308105	127304149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_127304348_127304898_127304985_127306347_127306510_127306604_127306714_127307051_127307131_127307607
transcript_86874.known	chr7	+	508	5	FSM	ENSMUSG00000108801.2	ENSMUST00000205992.2	508	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAACAGTGAACAGTGTCTA	2893	False	NA	NA	False	NA	NA	NA	127291106	127299355	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127291202_127292872_127292975_127296253_127296369_127298101_127298271_127299328
transcript_8688.nnic	chr10	+	913	3	NNC	ENSMUSG00000056821.14	novel	1056	3	NA	NA	-133	-52	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	23	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCCACCGCCTCTGCCTCT	NA	False	NA	NA	False	NA	NA	NA	82647823	82660024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_82647970_82654864_82654958_82659350
transcript_86880.known	chr7	+	2601	9	FSM	ENSMUSG00000030811.15	ENSMUST00000188580.3	2601	9	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_3	39.2681088798531	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGAAGTGTTACTTGAAC	2905	False	NA	11	True	NA	NA	NA	127347318	127367899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127347623_127348881_127349026_127349152_127349240_127350036_127350070_127351181_127351694_127360423_127360588_127361611_127361774_127366616_127366836_127366923
transcript_86886.nic	chr7	+	2067	2	ISM	ENSMUSG00000030811.15	ENSMUST00000206893.2	3449	10	19048	7	19048	0	3prime_fragment	FALSE	canonical	3	128	junction_1	0	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCGGGGCCGCTGACTTTT	NA	False	NA	8	True	TATAAA	-12	NA	127366493	127368648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_127366836_127366923
transcript_86888.known	chr7	+	2141	3	FSM	ENSMUSG00000043964.15	ENSMUST00000121504.2	2141	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGTTATTCCCAGACTA	NA	False	NA	NA	False	GATAAA	-15	NA	127368986	127374322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127369389_127369905_127370051_127372728
transcript_86889.known	chr7	+	1996	2	FSM	ENSMUSG00000043964.15	ENSMUST00000061587.13	1996	2	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	0	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGTTATTCCCAGACTA	NA	False	NA	NA	False	GATAAA	-15	NA	127368986	127374322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127369389_127372728
transcript_8689.nnic	chr10	+	965	3	NNC	ENSMUSG00000056821.14	novel	1056	3	NA	NA	-133	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	23	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCTGATTTTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	82647823	82660076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_82647970_82654864_82654958_82659350
transcript_86890.known	chr7	+	1828	7	FSM	ENSMUSG00000042289.12	ENSMUST00000046863.12	1828	7	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_6	10.2794292967395	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTCTACCTTTTACCCA	1884	False	NA	14	True	AATAAA	-15	NA	127399775	127402974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127399887_127400246_127400419_127400632_127400789_127401005_127401115_127401185_127401286_127401407_127401571_127401957
transcript_86892.known	chr7	+	1725	7	FSM	ENSMUSG00000042289.12	ENSMUST00000106272.8	1725	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	32.540999779765	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTCTACCTTTTACCCA	1894	False	NA	14	True	AATAAA	-15	NA	127399785	127402974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127399887_127400246_127400419_127400632_127400789_127401005_127401115_127401185_127401286_127401500_127401571_127401957
transcript_86894.nic	chr7	+	1777	7	NIC	ENSMUSG00000042289.12	novel	1828	7	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	28.5389597256491	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTCTACCTTTTACCCA	1883	False	NA	14	True	AATAAA	-15	NA	127399774	127402974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_127399887_127400298_127400419_127400632_127400789_127401005_127401115_127401185_127401286_127401407_127401571_127401957
transcript_86896.nic	chr7	+	2266	6	ISM	ENSMUSG00000042289.12	ENSMUST00000046863.12	1828	7	-51	0	-51	0	intron_retention	TRUE	canonical	3	82	junction_2	5.54977477020464	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTCTACCTTTTACCCA	1833	False	NA	14	True	AATAAA	-15	NA	127399724	127402974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_127399887_127400246_127400419_127400632_127400789_127401005_127401115_127401185_127401286_127401407
transcript_86897.known	chr7	+	1899	6	FSM	ENSMUSG00000042289.12	ENSMUST00000132702.8	1899	6	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_5	11.2178429299041	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTCTACCTTTTACCCA	1884	False	NA	14	True	AATAAA	-15	NA	127399775	127402974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127399887_127400246_127400419_127400632_127400789_127401005_127401286_127401407_127401571_127401957
transcript_86901.known	chr7	+	2286	5	FSM	ENSMUSG00000042289.12	ENSMUST00000144748.8	2286	5	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_2	5.22015325445528	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTCTACCTTTTACCCA	1884	False	NA	14	True	AATAAA	-15	NA	127399775	127402974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127399887_127400246_127400419_127400632_127400789_127401005_127401286_127401407
transcript_86905.known	chr7	+	6487	19	FSM	ENSMUSG00000042308.15	ENSMUST00000047075.14	6487	19	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	14.5429334585649	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGTCAGTATCTTTGG	NA	False	NA	17	True	ATTAAA	-17	NA	127375841	127399294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127376520_127377284_127377450_127377677_127377774_127379556_127379828_127382800_127382923_127383144_127383375_127384019_127384909_127385052_127385845_127386297_127386475_127386670_127386759_127387368_127387527_127387653_127387742_127390386_127390705_127394814_127395871_127396245_127396419_127396498_127396610_127396775_127396896_127398262_127398401_127398477
transcript_8691.nnic	chr10	+	1126	3	NNC	ENSMUSG00000056821.14	novel	1056	3	NA	NA	-133	161	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	23	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTCTTATAGCTCACAGTT	NA	False	NA	NA	False	NA	NA	NA	82647823	82660237	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_82647970_82654864_82654958_82659350
transcript_86912.known	chr7	+	1456	11	FSM	ENSMUSG00000030805.15	ENSMUST00000033075.14	1456	11	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_3	24.7872951327893	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCTGTGCAGTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	127440935	127448191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127441241_127441435_127441538_127441616_127441717_127441855_127441931_127442743_127442815_127445191_127445301_127445371_127445449_127445659_127445798_127447559_127447671_127447740_127447840_127447922
transcript_86913.known	chr7	+	1316	10	FSM	ENSMUSG00000030805.15	ENSMUST00000121705.8	1316	10	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_3	22.9965107390847	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATAAGAAGAAGCTTGGAG	NA	False	NA	NA	False	NA	NA	NA	127441139	127448172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127441241_127441435_127441538_127441616_127441717_127441855_127441931_127442743_127442815_127445191_127445301_127445371_127445449_127445659_127445798_127447559_127447671_127447740
transcript_86914.known	chr7	+	546	2	FSM	ENSMUSG00000030805.15	ENSMUST00000125861.2	546	2	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCTGTGCAGTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	127447562	127448191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127447840_127447922
transcript_86916.known	chr7	-	5768	3	FSM	ENSMUSG00000049728.15	ENSMUST00000054415.12	5768	3	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	4	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAGAAAAAAACAC	NA	False	NA	NA	False	AATAAA	-41	NA	127476000	127462218	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_127466536_127466927_127467597_127475218
transcript_8692.known	chr10	+	1056	3	FSM	ENSMUSG00000056821.14	ENSMUST00000178540.8	1056	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	1	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCTGATTTTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	82647956	82660076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_82648194_82654864_82654958_82659350
transcript_86921.known	chr7	-	387	3	FSM	ENSMUSG00000096145.3	ENSMUST00000119922.2	387	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	149.5	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGCCCAAGTGTGTGGGT	NA	False	NA	NA	False	NA	NA	NA	127494481	127492409	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_127492664_127493676_127493787_127494458
transcript_86923.known	chr7	+	6310	3	FSM	ENSMUSG00000049739.11	ENSMUST00000050383.8	6310	3	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	27	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACTGGTGTGGTTATATC	1663	False	NA	20	True	AAAACA	-19	NA	127476872	127485168	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127477280_127477741_127483091_127484614
transcript_86924.known	chr7	-	748	3	FSM	ENSMUSG00000096145.3	ENSMUST00000033074.8	748	3	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_2	18.5	4453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTAGCATATGTCTGCC	NA	False	NA	-11	True	AATAAA	-19	NA	127494789	127492234	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_127492664_127493676_127493787_127494580
transcript_86925.known	chr7	+	3405	12	FSM	ENSMUSG00000030802.15	ENSMUST00000071056.14	3405	12	0	0	0	0	multi-exon	FALSE	canonical	3	550	junction_9	38.261820946588	726	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCCTAGTGCCTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	127503253	127509393	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127503342_127503934_127504298_127504393_127504463_127504541_127504653_127504920_127504969_127505044_127505165_127505243_127505343_127505520_127505595_127506390_127506520_127506613_127506704_127507092_127507252_127507338
transcript_86933.nnic	chr7	+	1456	12	NNC	ENSMUSG00000030801.11	novel	1579	11	NA	NA	-7	-74	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	91.4521958852351	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGGAGGTACGCAGAGAT	NA	False	NA	18	True	AGTAAA	-19	NA	127511680	127524935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_127511755_127511810_127511915_127514399_127514475_127514550_127514727_127519407_127519462_127519593_127519759_127521330_127521421_127523549_127523691_127523775_127523870_127523967_127524119_127524280_127524436_127524758
transcript_86935.known	chr7	+	1579	11	FSM	ENSMUSG00000030801.11	ENSMUST00000033070.9	1579	11	0	0	0	0	multi-exon	FALSE	canonical	3	295	junction_2	15.0053323855222	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGATTCCTCGCTCCTTT	NA	False	NA	92	True	NA	NA	NA	127511687	127525009	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127511915_127514399_127514475_127514550_127514727_127519407_127519462_127519593_127519759_127521330_127521421_127523549_127523691_127523775_127523870_127523967_127524119_127524280_127524436_127524758
transcript_86936.nnic	chr7	+	1355	11	NNC	ENSMUSG00000030801.11	novel	660	2	NA	NA	256	-74	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	93.4796234481077	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGGAGGTACGCAGAGAT	NA	False	NA	18	True	AGTAAA	-19	NA	127511943	127524935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_127512021_127514399_127514475_127514550_127514727_127519407_127519462_127519593_127519759_127521330_127521421_127523549_127523691_127523775_127523870_127523967_127524119_127524280_127524436_127524758
transcript_86943.known	chr7	-	1709	7	FSM	ENSMUSG00000030800.11	ENSMUST00000206124.2	1709	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	11.3932241071417	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGTACACATATTTACAG	NA	False	NA	NA	False	AATAAA	-14	NA	127529276	127524887	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_127525813_127525916_127526084_127526170_127526443_127526980_127527144_127528728_127528747_127528969_127529086_127529228
transcript_86947.known	chr7	-	1852	6	FSM	ENSMUSG00000030800.11	ENSMUST00000032988.10	1852	6	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	2.78567765543682	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGTACACATATTTACAG	NA	False	NA	NA	False	AATAAA	-14	NA	127529276	127524887	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_127525813_127525916_127526084_127526170_127526443_127526980_127527144_127528728_127528747_127528969
transcript_86951.known	chr7	+	1014	3	FSM	ENSMUSG00000030801.11	ENSMUST00000206071.2	1014	3	0	0	0	0	multi-exon	FALSE	canonical	3	295	junction_2	0.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACAAAGTATGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	127511687	127515262	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127511915_127514399_127514475_127514550
transcript_86957.known	chr7	-	3028	15	FSM	ENSMUSG00000070371.12	ENSMUST00000118755.8	3028	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	29.9914953931672	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGCTTTGTGGCATCT	NA	False	NA	NA	False	AATAAA	-15	NA	127545897	127531809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_127532287_127532542_127532665_127532738_127533005_127533310_127533453_127533561_127533800_127534673_127534838_127534936_127535176_127535496_127535627_127535760_127536011_127540208_127540376_127543813_127544095_127544408_127544572_127545009_127545046_127545222_127545262_127545583
transcript_8696.known	chr10	+	2297	15	FSM	ENSMUSG00000020250.12	ENSMUST00000219962.3	2297	15	0	0	0	0	multi-exon	FALSE	canonical	1	267	junction_3	142.059218034492	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGGTGTAGCATTGTCTC	NA	False	NA	NA	False	AATACA	-16	NA	82695040	82732439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_82695135_82696357_82696465_82710446_82710570_82711457_82711531_82713099_82713220_82715039_82715183_82715583_82715700_82717556_82717783_82719747_82719841_82720318_82720396_82720775_82720933_82721019_82721128_82723006_82723103_82726217_82726353_82731810
transcript_86961.known	chr7	-	1132	6	FSM	ENSMUSG00000070371.12	ENSMUST00000156152.3	1132	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	34.92506263416	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGGAATGTGGCTCAACC	NA	False	NA	NA	False	NA	NA	NA	127534622	127531970	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_127532287_127532542_127532665_127532738_127533005_127533310_127533453_127533561_127533800_127534574
transcript_86962.nic	chr7	-	1335	6	NIC	ENSMUSG00000070371.12	novel	3028	15	NA	NA	-17	0	combination_of_known_junctions	TRUE	canonical	3	18	junction_4	32.2093154227158	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGCTTTGTGGCATCT	NA	False	NA	NA	False	AATAAA	-15	NA	127534708	127531809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_127532287_127532542_127532665_127532738_127533005_127533310_127533453_127533561_127533800_127534618
transcript_86973.nnic	chr7	-	1182	5	NIC	ENSMUSG00000070371.12	novel	3028	15	NA	NA	-6	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_3	30.0863341070327	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGCTTTGTGGCATCT	NA	False	NA	NA	False	AATAAA	-15	NA	127534697	127531809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_127532287_127532542_127532665_127532738_127533005_127533561_127533800_127534618
transcript_86975.nic	chr7	-	1104	5	NIC	ENSMUSG00000070371.12	novel	1016	5	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_3	37.3965239026303	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGCTTTGTGGCATCT	NA	False	NA	NA	False	AATAAA	-15	NA	127534695	127531809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_127532287_127532542_127532665_127532738_127533005_127533681_127533800_127534574
transcript_86976.known	chr7	-	1016	5	FSM	ENSMUSG00000070371.12	ENSMUST00000153110.8	1016	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	32.1820990614348	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGCTTTGTGGCATCT	NA	False	NA	NA	False	AATAAA	-15	NA	127534651	127531809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_127532287_127532542_127532665_127532738_127533005_127533681_127533800_127534618
transcript_8698.known	chr10	+	3325	14	FSM	ENSMUSG00000020250.12	ENSMUST00000020484.9	3325	14	0	0	0	0	multi-exon	FALSE	canonical	1	113	junction_1	208.745903123884	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGTGCCTTCTGACTGAGT	NA	False	NA	15	True	AATAAA	-16	NA	82695012	82733546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_82695135_82710446_82710570_82711457_82711531_82713099_82713220_82715039_82715183_82715583_82715700_82717556_82717783_82719747_82719841_82720318_82720396_82720775_82720933_82721019_82721128_82723006_82723103_82726217_82726353_82731810
transcript_86981.known	chr7	-	1052	5	FSM	ENSMUSG00000070371.12	ENSMUST00000152697.3	1052	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	39.2778563569857	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGCTTTGTGGCATCT	NA	False	NA	NA	False	AATAAA	-15	NA	127534691	127531809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_127532287_127532542_127532665_127533310_127533453_127533561_127533800_127534618
transcript_86986.known	chr7	-	1012	5	FSM	ENSMUSG00000070371.12	ENSMUST00000150591.8	1012	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	43.3265219005634	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTGGCTCCTCCTACTGGT	NA	False	NA	NA	False	NA	NA	NA	127535269	127532131	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_127532287_127532542_127532665_127533561_127533800_127534673_127534838_127534936
transcript_86995.nic	chr7	-	1032	4	NIC	ENSMUSG00000070371.12	novel	1052	5	NA	NA	-122	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_2	36.3409777890836	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGCTTTGTGGCATCT	NA	False	NA	NA	False	AATAAA	-15	NA	127534813	127531809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_127532287_127532542_127532665_127533561_127533800_127534618
transcript_86996.known	chr7	-	480	4	FSM	ENSMUSG00000070371.12	ENSMUST00000141385.7	480	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	44.7735040695573	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTCTGCTAGCTCCCCTAA	NA	False	NA	NA	False	NA	NA	NA	127534601	127532073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_127532287_127532542_127532665_127533681_127533800_127534574
transcript_86997.nic	chr7	-	791	4	NIC	ENSMUSG00000070371.12	novel	1016	5	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_2	40.8683523306509	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGCTTTGTGGCATCT	NA	False	NA	NA	False	AATAAA	-15	NA	127534692	127531809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_127532287_127532542_127532665_127533681_127533800_127534618
transcript_87006.known	chr7	-	176	2	FSM	ENSMUSG00000070371.12	ENSMUST00000144192.2	176	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTACATGGATATCGCAAAC	NA	False	NA	NA	False	NA	NA	NA	127534686	127532178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_127532287_127534618
transcript_87008.known	chr7	+	1831	15	FSM	ENSMUSG00000030795.19	ENSMUST00000077609.12	1831	15	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_3	273.376618440941	4170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTTTCCCCCAGTTTAC	1183	False	NA	37	True	ATTAAA	-20	NA	127566661	127581204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127566750_127568733_127568759_127568888_127569044_127571012_127571155_127571288_127571477_127571725_127571943_127573571_127573607_127575059_127575093_127576389_127576494_127577312_127577443_127579063_127579166_127579294_127579419_127580362_127580464_127580582_127580728_127580962
transcript_87009.known	chr7	+	1102	9	FSM	ENSMUSG00000030795.19	ENSMUST00000121616.9	1102	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_5	421.89955484096	3011	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTTTCCCCCAGTTTAC	1201	False	NA	37	True	ATTAAA	-20	NA	127566679	127581204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127566750_127568733_127568759_127568888_127569044_127571009_127571155_127571288_127571456_127579366_127579419_127580362_127580464_127580582_127580728_127580962
transcript_87010.known	chr7	+	2374	6	FSM	ENSMUSG00000030795.19	ENSMUST00000174196.8	2374	6	0	0	0	0	multi-exon	FALSE	canonical	3	619	junction_3	88.8603398598047	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAACAAAAAACCAACCC	1184	False	NA	NA	False	NA	NA	NA	127566662	127573499	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127566750_127568733_127568759_127568888_127569044_127571009_127571155_127571288_127571477_127571725
transcript_87011.known	chr7	+	4909	13	FSM	ENSMUSG00000030795.19	ENSMUST00000128851.8	4909	13	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_3	294.416324653071	717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTCTGTTTCCCCCAGTT	1184	False	NA	34	True	ATTAAA	-17	NA	127566662	127581201	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127566750_127568733_127568759_127568888_127569044_127571012_127571155_127571288_127571477_127571725_127575093_127576389_127576494_127577312_127577443_127579063_127579166_127579294_127579419_127580362_127580464_127580582_127580728_127580962
transcript_87012.known	chr7	+	761	3	FSM	ENSMUSG00000030795.19	ENSMUST00000141997.2	761	3	0	0	0	0	multi-exon	FALSE	canonical	3	1177	junction_2	88.5	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAAAAACATCATTTTAG	5487	False	NA	12	True	NA	NA	NA	127579355	127581179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127579419_127580362_127580464_127580582
transcript_87023.known	chr7	-	3800	3	FSM	ENSMUSG00000030793.5	ENSMUST00000033056.5	3800	3	0	0	0	0	multi-exon	FALSE	canonical	3	1219	junction_2	45	6267	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACATTTTTGCCTTTTTT	NA	False	NA	NA	False	ATTAAA	-19	NA	127593039	127588879	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_127592138_127592286_127592344_127592554
transcript_87024.nnic	chr7	+	874	2	NNC	ENSMUSG00000108596.2	novel	4803	30	NA	NA	-49816	13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTTTCTTGTCTCTTGGA	8839	False	NA	NA	False	AATAAA	-31	NA	127612038	127726401	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_127612491_127725979
transcript_87026.known	chr7	-	680	3	FSM	ENSMUSG00000030785.9	ENSMUST00000033049.9	680	3	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	3.5	281	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTCTTGTGTTAGTTCT	5383	False	NA	NA	False	AATACA	-20	NA	127805559	127804606	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_127804985_127805071_127805209_127805394
transcript_87027.known	chr7	+	3834	6	FSM	ENSMUSG00000042178.7	ENSMUST00000044660.6	3834	6	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	5.30659966456864	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGGGGTCGTCTG	NA	False	NA	10	True	ATTAAA	-21	NA	127836528	127844272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127837762_127839053_127839162_127839254_127840042_127841351_127841849_127842511_127842645_127843196
transcript_8703.nic	chr10	+	709	6	ISM	ENSMUSG00000020250.12	ENSMUST00000219962.3	2297	15	-48	17256	-20	-2533	5prime_fragment	TRUE	canonical	1	267	junction_3	167.888534450688	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTATAAAGCTGTACTCT	NA	False	NA	NA	False	NA	NA	NA	82694992	82715183	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_82695135_82696357_82696465_82710446_82710570_82711457_82711531_82713099_82713220_82715039
transcript_87031.known	chr7	+	1746	11	FSM	ENSMUSG00000030782.18	ENSMUST00000167965.8	1746	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.04403065089106	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTACAGTGCCAGAGAACC	4195	False	NA	NA	False	CATAAA	-14	NA	127846149	127852879	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_127846181_127847348_127847465_127847591_127847645_127847749_127847893_127848058_127848147_127848261_127848368_127848471_127848667_127851248_127851423_127851649_127851732_127851955_127852105_127852270
transcript_87032.known	chr7	-	2627	13	FSM	ENSMUSG00000030780.16	ENSMUST00000033044.16	2627	13	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_4	13.6897670623799	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCGCTTCATACTGCAGGC	1106	False	NA	-16	True	AGTAAA	-16	NA	127897342	127870550	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_127871788_127872643_127872722_127872822_127872967_127873804_127873876_127875257_127875316_127875399_127875585_127875666_127875738_127884284_127884387_127887435_127887542_127887630_127887664_127889761_127889808_127896633_127896749_127896961
transcript_87036.nnic	chr7	-	970	7	NNC	ENSMUSG00000030780.16	novel	464	3	NA	NA	27	3518	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_1	59.0124751406194	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCATCTAGATACCCTTGG	1133	False	NA	NA	False	AATAAA	-18	NA	127897315	127883618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_127883833_127884284_127884387_127887435_127887542_127887630_127887664_127889761_127889808_127896633_127896749_127896961
transcript_87038.nic	chr7	-	953	5	ISM	ENSMUSG00000030780.16	ENSMUST00000126263.8	1625	13	-48	15639	27	0	5prime_fragment	FALSE	canonical	3	151	junction_1	12.9107513336754	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTACTGCATGGATGACCCA	1133	False	NA	NA	False	AGTAAA	-15	NA	127897315	127887136	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_127887542_127887630_127887664_127889761_127889808_127896633_127896749_127896961
transcript_87039.nic	chr7	+	1027	4	ISM	ENSMUSG00000030781.14	ENSMUST00000118169.8	2277	14	5063	0	165	0	3prime_fragment	FALSE	canonical	1	3	junction_1	2.82842712474619	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGTTGTGGCTGAAACAT	NA	False	NA	NA	False	AATAAA	-16	NA	127869910	127871602	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_127870125_127870206_127870423_127870920_127871051_127871135
transcript_87042.known	chr7	-	1625	13	FSM	ENSMUSG00000030780.16	ENSMUST00000126263.8	1625	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	46.7953582693364	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAAGGGAACCGGTTCCT	1181	False	NA	-35	True	NA	NA	NA	127897267	127871497	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_127871788_127872643_127872722_127872822_127872967_127873804_127873896_127875257_127875316_127875399_127875585_127875666_127875738_127884284_127884387_127887435_127887542_127887630_127887664_127889761_127889808_127896633_127896749_127896961
transcript_87043.nnic	chr7	+	379	2	NNC	ENSMUSG00000108608.2	novel	828	2	NA	NA	-29	88	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAATAAAGTAAATAATGCA	NA	False	NA	NA	False	AATAAA	-22	NA	127942161	127942617	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_127942499_127942575
transcript_87044.known	chr7	-	880	5	FSM	ENSMUSG00000030844.12	ENSMUST00000033133.12	880	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	4.32290411644765	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTTAGTCATTTCTACTT	NA	False	NA	NA	False	ATTAAA	-24	NA	128019897	127975344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_127975767_127990687_127990832_128004893_128004981_128006082_128006202_128019789
transcript_87046.nnic	chr7	-	772	3	NNC	ENSMUSG00000030844.12	novel	880	5	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	8.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTTAGTCATTTCTACTT	9754	False	NA	NA	False	ATTAAA	-24	NA	127995406	127975344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_127975767_127990687_127990832_127995200
transcript_87047.known	chr7	-	458	3	FSM	ENSMUSG00000030844.12	ENSMUST00000134144.2	458	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	8	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCCCAGCGAAGGAGAGGG	9751	False	NA	NA	False	NA	NA	NA	127995409	127975608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_127975767_127990687_127990832_127995253
transcript_87052.known	chr7	-	564	3	FSM	ENSMUSG00000030844.12	ENSMUST00000145739.3	564	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTCATTGTGTGGGCTA	NA	False	NA	NA	False	CATAAA	-16	NA	128019887	128004633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_128004981_128006082_128006202_128019789
transcript_87060.known	chr7	-	2835	13	FSM	ENSMUSG00000030846.16	ENSMUST00000106228.8	2835	13	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_12	81.5772895275803	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCAGGGTTGCTATAAGT	NA	False	NA	NA	False	ATTAAA	-14	NA	128063397	128043126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128060320_128060381_128062848
transcript_87064.known	chr7	-	1580	12	FSM	ENSMUSG00000030846.16	ENSMUST00000033135.9	1580	12	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_7	29.2730095977351	616	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGACTATAAATTTTGAT	NA	False	NA	NA	False	AATAAA	-15	NA	128063079	128044003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848
transcript_87065.known	chr7	-	4451	12	FSM	ENSMUSG00000030846.16	ENSMUST00000106226.9	4451	12	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_10	64.264304450031	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCTTTCTCTTAGTGTTG	NA	False	NA	-6	True	AATAAA	-16	NA	128063396	128041500	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050495_128056659_128056757_128062848
transcript_87068.known	chr7	-	4266	11	FSM	ENSMUSG00000030846.16	ENSMUST00000141079.8	4266	11	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_6	28.929051142407	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAAAAAAATTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	128063376	128041948	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_128044384_128045530_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848
transcript_87070.known	chr7	-	2003	13	FSM	ENSMUSG00000030846.16	ENSMUST00000165023.8	2003	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_12	66.4515278647192	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGTGCTTTTACATGG	NA	False	NA	NA	False	ATTAAA	-12	NA	128063047	128043518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848_128062903_128062932
transcript_87074.known	chr7	-	1174	5	FSM	ENSMUSG00000108626.2	ENSMUST00000205319.2	1174	5	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	0.82915619758885	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGACATCACTTTGCCAATT	NA	False	NA	NA	False	NA	NA	NA	128101911	128089668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_128090063_128090663_128090776_128095740_128095870_128098931_128099057_128101497
transcript_87076.known	chr7	+	2562	4	FSM	ENSMUSG00000030847.9	ENSMUST00000033136.9	2562	4	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_2	8.2192186706253	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTTGTGGTTTCTAA	7142	False	NA	17	True	AATAAA	-22	NA	128125339	128148705	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_128125769_128141696_128142036_128143530_128143933_128147313
transcript_87077.known	chr7	+	4734	20	FSM	ENSMUSG00000042105.19	ENSMUST00000043138.13	4734	20	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_6	8.64088073894081	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAATGCTGTAGCCTTTTT	7176	False	NA	NA	False	ATTAAA	-3	NA	128213083	128298149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_128213416_128237881_128237963_128260739_128260877_128265361_128265491_128265700_128265869_128265972_128266030_128269320_128269520_128270137_128270318_128271654_128271723_128277021_128277147_128278452_128278531_128279720_128279842_128281440_128281570_128283971_128284090_128286809_128287009_128292350_128292423_128293475_128293550_128293977_128294107_128295368_128295457_128295899
transcript_87078.known	chr7	+	1906	10	FSM	ENSMUSG00000042105.19	ENSMUST00000098007.11	1906	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	20.8918437626378	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTATGAAGAGAATGAAAGG	7144	False	NA	NA	False	AATAAA	-17	NA	128213051	128273346	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_128213416_128237881_128237963_128260739_128260877_128265361_128265491_128265700_128265869_128265972_128266030_128269320_128269520_128270137_128270318_128271654_128271723_128272823
transcript_87081.nic	chr7	+	748	4	ISM	ENSMUSG00000042105.19	ENSMUST00000098007.11	1906	10	-37	7856	-37	-4805	5prime_fragment	TRUE	canonical	3	55	junction_3	6.16441400296898	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGACTTTGATTGACGTG	7107	False	NA	NA	False	AAAAAG	-4	NA	128213014	128265490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_128213416_128237881_128237963_128260739_128260877_128265361
transcript_87083.known	chr7	+	4505	19	FSM	ENSMUSG00000055319.9	ENSMUST00000042942.10	4505	19	0	0	0	0	multi-exon	TRUE	canonical	3	121	junction_10	14.275615919341	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGTCTCTCCCTGTTTC	1931	False	NA	23	True	AATAAA	-35	NA	128346666	128386560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_128346903_128351782_128352310_128354429_128354641_128355773_128355968_128357039_128357130_128359486_128359608_128363139_128363230_128364113_128364256_128365664_128365874_128367107_128367227_128367849_128368003_128369290_128369387_128373888_128374087_128378494_128378651_128379007_128379111_128380152_128380339_128380786_128380950_128381359_128381462_128385151
transcript_87085.known	chr7	+	4550	29	FSM	ENSMUSG00000042055.14	ENSMUST00000084519.7	4550	29	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_20	18.5519128228804	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTGTTTGAGTCTCTT	NA	False	NA	6	True	AATAAA	-19	NA	129193586	129237462	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_129193788_129194699_129194812_129200748_129200903_129202160_129202335_129204722_129204910_129206801_129206968_129207418_129207534_129208240_129208437_129208720_129208822_129209484_129209662_129210565_129210651_129215590_129215698_129218317_129218394_129220349_129220459_129221617_129221743_129222069_129222218_129225974_129226082_129226428_129226544_129226879_129227052_129229728_129229838_129230717_129230781_129231641_129231708_129232343_129232522_129232897_129232994_129233431_129233598_129234047_129234146_129234433_129234580_129235373_129235454_129236541
transcript_87090.nic	chr7	+	724	4	ISM	ENSMUSG00000042055.14	ENSMUST00000136734.8	4989	11	-67	11621	-12	-7127	5prime_fragment	FALSE	canonical	3	164	junction_2	6.34209919681348	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAACGTTCTCTGCCTTCA	NA	False	NA	NA	False	AATAAA	-21	NA	129193574	129202405	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_129193788_129194699_129194812_129200748_129200903_129202160
transcript_87091.known	chr7	-	4685	12	FSM	ENSMUSG00000030850.18	ENSMUST00000035458.15	4685	12	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_5	43.8843333177548	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTCGGCCGTGGTTCT	NA	False	NA	-15	True	AATAAA	-16	NA	130121260	129993222	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_129996467_130020177_130020299_130065860_130065961_130068985_130069168_130083412_130083446_130105451_130105581_130109211_130109430_130110736_130110989_130112540_130112645_130115491_130115555_130117834_130117899_130121085
transcript_87092.known	chr7	-	4735	12	FSM	ENSMUSG00000030850.18	ENSMUST00000033139.15	4735	12	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_5	49.9651117950737	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTCGGCCGTGGTTCT	NA	False	NA	-15	True	AATAAA	-16	NA	130121310	129993222	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_129996467_130020177_130020299_130065860_130065961_130068985_130069168_130083412_130083446_130106423_130106553_130109211_130109430_130110736_130110989_130112540_130112645_130115491_130115555_130117834_130117899_130121085
transcript_87093.known	chr7	-	1938	12	FSM	ENSMUSG00000030850.18	ENSMUST00000094017.5	1938	12	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_11	68.2405807383271	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCTGCACCTCAGCCCAG	NA	False	NA	NA	False	NA	NA	NA	130122099	129996287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_129996467_130020177_130020299_130065860_130065961_130068985_130069168_130083412_130083446_130106423_130106553_130109211_130109430_130110736_130110989_130112540_130112645_130115491_130115555_130117834_130117899_130121606
transcript_87099.nic	chr7	-	546	5	ISM	ENSMUSG00000030850.18	ENSMUST00000216011.2	1680	13	-88	114580	-19	0	5prime_fragment	FALSE	canonical	3	222	junction_1	23.2432785983389	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAGAAGGAGAAAGAAAAGA	NA	False	NA	NA	False	AAAACA	-33	NA	130121279	130110867	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_130110989_130112540_130112645_130115491_130115555_130117834_130117899_130121085
transcript_87108.nnic	chr7	-	1176	11	NNC	ENSMUSG00000040331.17	novel	1435	11	NA	NA	416	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_10	440.942445223864	138	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACGTGATCGTTTTTATTG	NA	False	NA	-7	True	ATTAAA	-22	NA	130148695	130134255	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_130134423_130135306_130135397_130135499_130135592_130137253_130137303_130138712_130138808_130139891_130139983_130140740_130140841_130141543_130141696_130144409_130144541_130147624_130147703_130148564
transcript_87109.nnic	chr7	-	1208	11	NIC	ENSMUSG00000040331.17	novel	1435	11	NA	NA	-70	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	442.132106954471	136	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACGTGATCGTTTTTATTG	NA	False	NA	-7	True	ATTAAA	-22	NA	130174918	130134255	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_130134423_130135306_130135397_130135499_130135592_130137253_130137303_130138712_130138808_130139891_130139983_130140740_130140841_130141543_130141696_130144409_130144541_130147624_130147703_130174755
transcript_8711.known	chr10	+	603	4	FSM	ENSMUSG00000112134.2	ENSMUST00000219407.2	603	4	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_2	3.55902608401044	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCTTATCACCCAAACCAC	NA	False	NA	NA	False	NA	NA	NA	83180376	83186943	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_83180563_83185918_83186165_83186398_83186496_83186869
transcript_8712.nnic	chr10	+	1635	3	NIC	ENSMUSG00000112134.2	novel	603	4	NA	NA	-149	1129	combination_of_known_splicesites	FALSE	canonical	3	11	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCCAAAAAAATTTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	83180227	83188072	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_+_83180563_83186398_83186496_83186869
transcript_87122.known	chr7	+	2248	1	FSM	ENSMUSG00000030852.19	ENSMUST00000208661.2	2248	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	130294332	130296580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_130294300_130296600
transcript_87123.known	chr7	+	766	3	FSM	ENSMUSG00000030852.19	ENSMUST00000208106.2	766	3	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_1	3	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAATCTATAAGCATTTCTC	NA	False	NA	NA	False	NA	NA	NA	130247658	130276469	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_130248161_130264745_130264872_130276331
transcript_87124.known	chr7	+	3492	16	FSM	ENSMUSG00000030852.19	ENSMUST00000207549.2	3492	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	100.624626983436	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAAAAAAAAAAGAAT	NA	False	NA	-47	True	NA	NA	NA	130247959	130366438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_130248161_130276331_130276470_130318432_130318570_130330252_130331559_130335247_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
transcript_87125.known	chr7	+	3464	15	FSM	ENSMUSG00000030852.19	ENSMUST00000207282.2	3464	15	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	76.8787808096324	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGAGTGTGGCTGTGAGTT	NA	False	NA	29	True	AATAAA	-41	NA	130294494	130366514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_130294718_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
transcript_87131.known	chr7	+	2301	13	FSM	ENSMUSG00000040268.18	ENSMUST00000075181.11	2301	13	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	52.7225441975884	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCGGTGGAAGACCTCAGTT	NA	False	NA	NA	False	AATAGA	-19	NA	130467627	130513798	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_130467731_130479463_130479625_130484059_130484117_130487132_130487179_130493910_130494009_130499054_130499181_130502246_130502391_130503906_130503976_130506599_130506665_130507120_130507185_130510065_130510156_130511317_130511359_130512561
transcript_87137.known	chr7	+	2041	9	FSM	ENSMUSG00000006205.14	ENSMUST00000006367.8	2041	9	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_3	16.015617378047	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGCGTGCTTCTTTTAT	6622	False	NA	19	True	ATTAAA	-20	NA	130537932	130587390	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_130538474_130563242_130563343_130563702_130563908_130581030_130581226_130581681_130581715_130583386_130583502_130583966_130584025_130585389_130585486_130586692
transcript_8714.known	chr10	+	123179	4	FSM	ENSMUSG00000020255.9	ENSMUST00000020488.9	123179	4	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	5.24933858267454	190	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTGTGTCAGTAAAGTTC	NA	False	NA	5	True	AATAAA	-14	NA	83196084	83324369	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_83196238_83197910_83197998_83200242_83200380_83201567
transcript_87140.known	chr7	-	6773	6	FSM	ENSMUSG00000040177.11	ENSMUST00000059438.11	6773	6	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_5	3.61109401705356	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCTGTTTTCAGTAATAAA	NA	False	NA	NA	False	AATAAA	-15	NA	130964488	130939948	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_130945534_130952379_130952832_130959188_130959396_130962617_130962691_130963461_130963666_130964236
transcript_87145.known	chr7	-	353	2	FSM	ENSMUSG00000040177.11	ENSMUST00000208509.2	353	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTGGAACCAGTCGAGG	NA	False	NA	NA	False	AAGAAA	-26	NA	130964439	130963511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_130963662_130964236
transcript_87146.known	chr7	-	3703	6	FSM	ENSMUSG00000040177.11	ENSMUST00000208526.2	3703	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	35.0793386482699	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGATATTTGGTTTTTTTT	NA	False	NA	NA	False	AATATA	-25	NA	130964425	130944914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_130945534_130950420_130952832_130959188_130959396_130962617_130962691_130963461_130963666_130964236
transcript_87147.known	chr7	-	418	3	FSM	ENSMUSG00000040177.11	ENSMUST00000207305.2	418	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	47.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATTGGATTCTCCCACG	NA	False	NA	NA	False	NA	NA	NA	130964116	130962655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_130962691_130963461_130963666_130963937
transcript_87151.known	chr7	+	1116	6	FSM	ENSMUSG00000063179.14	ENSMUST00000145114.8	1116	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	77.0516709747427	1235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTCTGATTTGGATAAA	NA	False	NA	19	True	ATTAAA	-19	NA	130972874	130989565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_130973119_130975264_130975560_130975793_130975993_130985653_130985730_130986239_130986323_130989346
transcript_87153.nic	chr7	+	1224	6	NIC	ENSMUSG00000063179.14	novel	1135	6	NA	NA	-42	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_5	73.3746550247427	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACTTGTTTATACTTACAA	NA	False	NA	NA	False	AATAAA	-21	NA	130972827	130994497	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_130973119_130975264_130975560_130975793_130975993_130985653_130985730_130986228_130986323_130994228
transcript_87165.nic	chr7	+	865	5	NIC	ENSMUSG00000063179.14	novel	1135	6	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_1	59.6547357717726	600	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGATTTGGATAAATTT	NA	False	NA	22	True	ATTAAA	-22	NA	130972844	130989568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_130973119_130975793_130975993_130985653_130985730_130986228_130986323_130989346
transcript_87174.known	chr7	-	4430	4	FSM	ENSMUSG00000040167.17	ENSMUST00000046306.15	4430	4	0	0	0	0	multi-exon	TRUE	canonical	3	63	junction_1	6.97614984548545	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTTTGTTTTTTTTTTA	NA	False	NA	-2	True	AATAAA	-17	NA	131012250	130990380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_130994310_130995483_130995667_130998397_130998581_131012115
transcript_87178.known	chr7	+	675	1	FSM	ENSMUSG00000063179.14	ENSMUST00000207419.2	675	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	258	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGGTTA	NA	False	NA	NA	False	AAGAAA	-10	NA	130972884	130973559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_130972900_130973600
transcript_87179.known	chr7	+	459	3	FSM	ENSMUSG00000063179.14	ENSMUST00000141914.3	459	3	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	78.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCATTGGAAAATCCCATAA	NA	False	NA	NA	False	NA	NA	NA	130972885	130985680	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_130973119_130975793_130975993_130985653
transcript_87181.known	chr7	+	6081	11	FSM	ENSMUSG00000030861.16	ENSMUST00000015829.15	6081	11	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_4	19.6022957839127	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	131012329	131050673	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_131012517_131026200_131026361_131027503_131027605_131030157_131030365_131031675_131031847_131033665_131033792_131035998_131036092_131039130_131039221_131042930_131043069_131045197_131045298_131045965
transcript_87182.nic	chr7	+	1161	8	ISM	ENSMUSG00000030861.16	ENSMUST00000117518.2	2466	10	-100	7244	2	0	5prime_fragment	FALSE	canonical	3	100	junction_4	21.0402917648739	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTTTACCCTTCCTGTGT	NA	False	NA	NA	False	ATTAAA	-14	NA	131012331	131039248	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_131012517_131026200_131026361_131027503_131027605_131030157_131030365_131031675_131031847_131033665_131033792_131035998_131036092_131039130
transcript_87184.known	chr7	+	3102	2	FSM	ENSMUSG00000050100.15	ENSMUST00000051997.9	3102	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGGATATGTGTATTTT	9350	False	NA	NA	False	ATTAAA	-18	NA	131155789	131159743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_131156304_131157155
transcript_87185.known	chr7	+	2128	9	FSM	ENSMUSG00000066979.7	ENSMUST00000207736.2	2128	9	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_4	579.695609781547	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAGGTGTGTTACCTTGG	NA	False	NA	11	True	ATTAAA	-20	NA	131162108	131173624	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_131162184_131162438_131162634_131163265_131163336_131164026_131164092_131165062_131165215_131167921_131168081_131169912_131170091_131170233_131170451_131172607
transcript_87188.known	chr7	+	2218	8	FSM	ENSMUSG00000066979.7	ENSMUST00000084502.7	2218	8	0	0	0	0	multi-exon	FALSE	canonical	3	1325	junction_6	52.1422700554033	1238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCCAGGTGTGTTACCT	NA	False	NA	8	True	ATTAAA	-17	NA	131161950	131173621	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_131162184_131162438_131162634_131163265_131163336_131165062_131165215_131167921_131168081_131169912_131170091_131170233_131170451_131172607
transcript_87189.known	chr7	+	832	2	FSM	ENSMUSG00000066979.7	ENSMUST00000208848.2	832	2	0	0	0	0	multi-exon	FALSE	canonical	3	1386	junction_1	0	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	131162119	131163206	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_131162184_131162438
transcript_8719.known	chr10	-	6027	23	FSM	ENSMUSG00000020256.15	ENSMUST00000020497.14	6027	23	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_9	8.2773463628096	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTTTTCTCCTTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	83370004	83323313	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_83326499_83328338_83328539_83329292_83329399_83331732_83331899_83333335_83333435_83335702_83335803_83337757_83337852_83338305_83338394_83339805_83339912_83339989_83340061_83342461_83342613_83343878_83344007_83344476_83344597_83348153_83348302_83349446_83349539_83350318_83350445_83351911_83352047_83354207_83354298_83354496_83354599_83356133_83356300_83358565_83358801_83363168_83363314_83369830
transcript_87190.known	chr7	+	678	7	FSM	ENSMUSG00000066979.7	ENSMUST00000207231.2	678	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	641.309012879127	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCCATCGAAGGCCGAGTG	NA	False	NA	NA	False	NA	NA	NA	131162167	131169925	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_131162184_131162438_131162634_131163265_131163336_131165062_131165215_131165361_131165435_131167921_131168081_131169912
transcript_87191.known	chr7	-	801	1	FSM	ENSMUSG00000062758.7	ENSMUST00000085365.6	801	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	479	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACACTGAATTTTCTGT	NA	False	NA	NA	False	AAAAAG	-36	NA	131216717	131215916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_131215900_131216700
transcript_87193.known	chr7	-	3498	14	FSM	ENSMUSG00000030862.14	ENSMUST00000033149.5	3498	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	1.10940039245046	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCATGTAGTTTTCTAAG	NA	False	NA	NA	False	NA	NA	NA	131756468	131644544	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_131645876_131649443_131649544_131650717_131650858_131656459_131656758_131659362_131659543_131661462_131661660_131663795_131663920_131672545_131672635_131680501_131680653_131681765_131681851_131708011_131708152_131730080_131730191_131745396_131745496_131756014
transcript_87197.known	chr7	-	2152	10	FSM	ENSMUSG00000030934.10	ENSMUST00000084500.8	2152	10	0	0	0	0	multi-exon	FALSE	canonical	3	402	junction_6	42.9636653837854	931	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGATGTGAATCTATTTA	NA	False	NA	-5	True	AATAAA	-24	NA	132178127	132159206	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_132160060_132161374_132161520_132162480_132162595_132163512_132163642_132164315_132164439_132165935_132166064_132168497_132168594_132168794_132169020_132171634_132171870_132178023
transcript_87206.known	chr7	+	999	7	FSM	ENSMUSG00000030946.14	ENSMUST00000106170.8	999	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	120.604611115091	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGTCTGGACAGCTCAAT	NA	False	NA	NA	False	AATAAA	-16	NA	132212395	132272338	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_132212560_132232210_132232399_132235729_132235884_132243252_132243317_132244215_132244309_132251986_132252079_132272094
transcript_87207.known	chr7	+	1612	7	FSM	ENSMUSG00000030946.14	ENSMUST00000033241.6	1612	7	0	0	0	0	multi-exon	FALSE	canonical	3	290	junction_6	19.9979165581484	817	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGACTCAGCCTTTCTTA	NA	False	NA	12	True	AATAAA	-20	NA	132212367	132308149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_132212560_132232210_132232399_132235729_132235884_132243252_132243317_132244215_132244309_132251986_132252079_132307320
transcript_87210.nic	chr7	+	1566	6	NIC	ENSMUSG00000030946.14	novel	1612	7	NA	NA	-48	0	combination_of_known_junctions	TRUE	canonical	2	20	junction_5	121.921942241747	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTTTGACTCAGCCTTTC	NA	False	NA	9	True	AATAAA	-17	NA	132212318	132308146	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_132212560_132232210_132232399_132235729_132235884_132243252_132243317_132244215_132244309_132307320
transcript_87212.nnic	chr7	+	1286	5	NIC	ENSMUSG00000030946.14	novel	1612	7	NA	NA	-18	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_1	131.685942681822	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTTTGACTCAGCCTTTC	NA	False	NA	9	True	AATAAA	-17	NA	132212348	132308146	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_132212560_132243252_132243317_132244215_132244309_132251986_132252079_132307320
transcript_87215.known	chr7	-	1581	2	FSM	ENSMUSG00000087348.2	ENSMUST00000132849.2	1581	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGCAAAAAACAACAACA	8795	False	NA	NA	False	NA	NA	NA	132261613	132259106	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_132260173_132261098
transcript_87220.known	chr7	-	1232	4	FSM	ENSMUSG00000030956.16	ENSMUST00000106165.8	1232	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	47.005909793935	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132414824	132360996	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_132361897_132373306_132373359_132380864_132381115_132414794
transcript_87221.known	chr7	-	516	4	FSM	ENSMUSG00000030956.16	ENSMUST00000134946.3	516	4	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_3	31.3155978174881	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGGGAATGTCTGCCTGA	NA	False	NA	NA	False	NA	NA	NA	132415458	132361831	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_132361897_132373306_132373359_132380864_132381115_132415309
transcript_8723.nic	chr10	+	314	2	ISM	ENSMUSG00000034560.7	ENSMUST00000217842.2	5014	33	200	48487	11	-41253	5prime_fragment	FALSE	canonical	3	360	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTATATGAATATATGTTTA	NA	False	NA	NA	False	ATTAAA	-25	NA	83379815	83382811	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_83379967_83382648
transcript_87235.known	chr7	-	1107	6	FSM	ENSMUSG00000030960.17	ENSMUST00000033257.15	1107	6	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_3	60.7651215747982	1185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTTTTTGGTTTTTGTGC	NA	False	NA	NA	False	AGTAAA	-18	NA	132454402	132429185	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_132429612_132433088_132433306_132438828_132438937_132452323_132452439_132453154_132453221_132454227
transcript_87236.known	chr7	-	627	5	FSM	ENSMUSG00000030960.17	ENSMUST00000152410.8	627	5	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_2	126.610623566903	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACCGTTTTGAATGTGTG	NA	False	NA	NA	False	NA	NA	NA	132454344	132433088	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_132433306_132438828_132438937_132452319_132452439_132453154_132453221_132454227
transcript_87237.known	chr7	+	2205	10	FSM	ENSMUSG00000030967.16	ENSMUST00000215716.2	2205	10	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	32.7870043511295	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAACAAACCTAAGGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	132549896	132585680	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_132549938_132551313_132552165_132568235_132568424_132572914_132573069_132574418_132574491_132575153_132575353_132583009_132583131_132584099_132584230_132584411_132584642_132585461
transcript_87238.known	chr7	+	2892	9	FSM	ENSMUSG00000030965.20	ENSMUST00000084497.12	2892	9	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_8	19.6273883896967	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGATATTTTAGTGTCTGT	NA	False	NA	16	True	AATAAA	-18	NA	132460953	132486840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_132461063_132466691_132466783_132470761_132470799_132473300_132473368_132476555_132476747_132478326_132478447_132480257_132480343_132482495_132482611_132484763
transcript_87240.known	chr7	+	2827	9	FSM	ENSMUSG00000030965.20	ENSMUST00000129552.2	2827	9	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	67.4532245337464	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATACGATATTTTAGTGTC	NA	False	NA	13	True	AATAAA	-15	NA	132460977	132486837	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_132461063_132466691_132466783_132470761_132470799_132473300_132473368_132476555_132476747_132478364_132478447_132480257_132480343_132482495_132482611_132484763
transcript_87247.known	chr7	+	1778	1	FSM	ENSMUSG00000030965.20	ENSMUST00000210077.2	1778	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132460963	132462741	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_132461000_132462700
transcript_87248.known	chr7	+	5008	10	FSM	ENSMUSG00000030967.16	ENSMUST00000106157.8	5008	10	0	0	0	0	multi-exon	TRUE	canonical	3	56	junction_1	22.7129157795708	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGATTCAGATCTGACT	NA	False	NA	4	True	ATTAAA	-16	NA	132532870	132588120	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_132533275_132551313_132552165_132568235_132568424_132572914_132573069_132574418_132574491_132575153_132575353_132583009_132583131_132584099_132584230_132584411_132584642_132585461
transcript_8725.known	chr10	+	5858	33	FSM	ENSMUSG00000034560.7	ENSMUST00000038388.7	5858	33	0	0	0	0	multi-exon	TRUE	canonical	3	259	junction_12	27.5850956133924	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAAAACTGTCCTTCCAT	NA	False	NA	14	True	AATAAA	-17	NA	83379804	83432337	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_83379967_83382648_83382789_83385325_83385380_83385462_83385529_83386127_83386174_83386744_83386813_83390597_83390681_83391436_83391480_83391876_83391981_83392666_83392788_83394461_83394586_83394681_83394810_83396229_83396391_83400274_83400402_83405831_83405958_83407216_83407325_83407956_83408104_83408221_83408302_83409639_83409746_83410306_83410424_83411880_83412050_83412538_83412694_83415345_83415421_83416120_83416226_83417120_83417256_83419118_83419228_83421681_83421749_83422497_83422585_83424020_83424169_83426154_83426252_83426850_83427048_83427552_83427653_83430034
transcript_87250.nic	chr7	-	2191	11	NIC	ENSMUSG00000030970.17	novel	2321	11	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_10	270.834709740092	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAACAAA	6265	False	NA	6	True	AGTAAA	-13	NA	132714446	132589349	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_132590081_132591718_132591837_132592159_132592288_132592767_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132627441_132627602_132683485_132683590_132714349
transcript_87255.known	chr7	-	2321	11	FSM	ENSMUSG00000030970.17	ENSMUST00000033269.15	2321	11	0	0	0	0	multi-exon	FALSE	canonical	3	550	junction_8	136.177861636905	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAACAAA	NA	False	NA	6	True	AGTAAA	-13	NA	132725096	132589349	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_132590081_132591718_132591837_132592159_132592288_132592767_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132627441_132627602_132683485_132683590_132724869
transcript_87263.nnic	chr7	-	2014	10	NNC	ENSMUSG00000030970.17	novel	2321	11	NA	NA	-151	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_9	329.604514232541	93	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAACAAA	NA	False	NA	6	True	AGTAAA	-13	NA	132724495	132589349	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_132590081_132591718_132591837_132592159_132592288_132592767_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132683485_132683590_132724415
transcript_87266.known	chr7	-	1997	10	FSM	ENSMUSG00000030970.17	ENSMUST00000166439.8	1997	10	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_8	235.790763073148	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGAAAAGAACAAAAGAAAAA	NA	False	NA	43	True	NA	NA	NA	132724895	132589312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_132590081_132591718_132591837_132592159_132592288_132592767_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132683485_132683590_132724869
transcript_87268.known	chr7	+	5424	25	FSM	ENSMUSG00000039990.17	ENSMUST00000051169.13	5424	25	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_10	22.9037463577953	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTGTAATTACTTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	133239271	133274700	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_133239653_133240635_133240845_133242408_133242476_133243022_133243149_133245376_133245502_133245721_133245879_133248718_133248821_133249073_133249196_133249914_133250027_133252006_133252155_133252229_133252339_133252752_133252865_133253661_133253923_133255615_133255688_133255985_133256137_133258223_133258413_133258696_133258898_133260154_133260374_133261799_133262024_133263511_133263671_133263809_133263960_133265089_133265244_133267596_133267713_133269268_133269421_133273094
transcript_87269.known	chr7	+	2004	11	FSM	ENSMUSG00000053111.14	ENSMUST00000065359.12	2004	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	2.56904651573303	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCACAGGAGTGGACTCTTA	NA	False	NA	NA	False	AATAAA	-16	NA	133378589	133483261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_133378700_133454894_133455073_133463831_133463957_133469846_133469929_133471006_133471082_133471750_133471817_133478476_133478643_133481607_133481752_133482000_133482079_133482172_133482218_133482326
transcript_87272.nic	chr7	+	1336	11	NIC	ENSMUSG00000053111.14	novel	515	5	NA	NA	-62	0	combination_of_known_junctions	FALSE	canonical	1	4	junction_8	2.00249843945008	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTTCATATGTGGTCTC	NA	False	NA	NA	False	AATACA	-14	NA	133391151	133482568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_133391287_133454894_133455073_133463831_133463957_133469846_133469929_133471006_133471082_133471750_133471817_133478476_133478643_133481607_133481752_133482000_133482079_133482172_133482218_133482326
transcript_87273.nic	chr7	+	2029	11	NIC	ENSMUSG00000053111.14	novel	515	5	NA	NA	-62	0	combination_of_known_junctions	FALSE	canonical	1	4	junction_8	2.00249843945008	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCACAGGAGTGGACTCTTA	NA	False	NA	NA	False	AATAAA	-16	NA	133391151	133483261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_133391287_133454894_133455073_133463831_133463957_133469846_133469929_133471006_133471082_133471750_133471817_133478476_133478643_133481607_133481752_133482000_133482079_133482172_133482218_133482326
transcript_87276.known	chr7	-	2955	12	FSM	ENSMUSG00000030986.14	ENSMUST00000033290.12	2955	12	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_11	48.5725154403017	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTCAATGGGTTTCTTG	NA	False	NA	-9	True	AATAAA	-19	NA	133378532	133322670	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_133323126_133323877_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335856_133335937_133336038_133338917_133339164_133344157_133344531_133350571_133350766_133361128_133361643_133378330
transcript_8728.known	chr10	-	3020	21	FSM	ENSMUSG00000020263.15	ENSMUST00000020500.14	3020	21	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	12.9324205004322	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTATTGTGGTTAGTTT	NA	False	NA	0	True	AATAAA	-18	NA	83484602	83435896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_83436906_83437746_83437795_83438621_83438763_83438989_83439027_83441623_83441799_83444563_83444617_83444800_83444960_83446841_83446931_83447006_83447064_83447313_83447357_83448575_83448765_83450007_83450167_83453210_83453294_83456561_83456709_83457392_83457452_83457575_83457618_83460482_83460571_83464092_83464165_83464637_83464698_83476869_83476969_83484391
transcript_87280.known	chr7	-	2233	11	FSM	ENSMUSG00000030986.14	ENSMUST00000106139.8	2233	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	118.743589300644	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAGAAAAAAATCAT	NA	False	NA	55	True	NA	NA	NA	133378430	133322776	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_133323126_133323877_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335856_133335937_133336038_133338917_133339164_133344157_133344531_133350571_133350766_133378330
transcript_87282.known	chr7	-	1644	10	FSM	ENSMUSG00000030979.14	ENSMUST00000106145.10	1644	10	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_9	18.4477908610847	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGATCTGAGTATGGTAGC	NA	False	NA	NA	False	NA	NA	NA	133310798	133288084	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_133288846_133291310_133291410_133292236_133292323_133292814_133292896_133299397_133299473_133300872_133300948_133302542_133302640_133303567_133303652_133304058_133304199_133310652
transcript_87283.known	chr7	-	1762	10	FSM	ENSMUSG00000030979.14	ENSMUST00000033276.11	1762	10	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_9	13.5163367087644	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATAGGACTGATCTGAG	NA	False	NA	NA	False	NA	NA	NA	133311010	133288093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_133288846_133291310_133291410_133292236_133292323_133292814_133292896_133299397_133299473_133300872_133300948_133302542_133302640_133303567_133303652_133304058_133304199_133310737
transcript_87291.known	chr7	-	2189	9	FSM	ENSMUSG00000030979.14	ENSMUST00000135760.8	2189	9	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_8	13.9821314541096	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	133310823	133287971	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_133288846_133291310_133291410_133292236_133292896_133299397_133299473_133300872_133300948_133302542_133302640_133303567_133303652_133304058_133304199_133310737
transcript_87294.known	chr7	-	1045	7	FSM	ENSMUSG00000030979.14	ENSMUST00000106144.8	1045	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	27.2299875545734	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCACTGTTGCTTGTACTT	NA	False	NA	NA	False	AATAAA	-14	NA	133310788	133293862	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_133294386_133299397_133299473_133300872_133300948_133302542_133302640_133303567_133303652_133304058_133304199_133310737
transcript_87300.known	chr7	-	456	1	FSM	ENSMUSG00000081431.2	ENSMUST00000120338.2	456	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCTGTTGTGTGCACAAGC	NA	False	NA	NA	False	NA	NA	NA	133340663	133340207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_133340200_133340700
transcript_87301.known	chr7	+	1244	7	FSM	ENSMUSG00000030983.5	ENSMUST00000033282.5	1244	7	0	0	0	0	multi-exon	FALSE	canonical	3	1578	junction_1	47.9215214931895	9051	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGAAGTGTTCATGTCC	1307	False	NA	23	True	AATAAA	-24	NA	133311061	133322874	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_133311258_133315916_133315992_133316627_133316709_133318589_133318680_133319327_133319516_133320832_133321008_133322435
transcript_87303.known	chr7	+	2589	21	FSM	ENSMUSG00000058325.7	ENSMUST00000211593.2	2589	21	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_11	23.1652217774836	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTTTCTGTTTTGA	NA	False	NA	7	True	NA	NA	NA	134272415	134384915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_134272574_134326058_134326143_134331746_134331788_134335778_134335835_134339358_134339456_134342714_134342864_134345932_134346069_134346678_134346837_134348157_134348240_134348636_134348773_134355090_134355164_134358605_134358686_134362540_134362667_134365577_134365703_134366948_134367048_134367919_134367993_134373195_134373300_134374020_134374205_134379123_134379222_134384077_134384168_134384475
transcript_87305.known	chr7	+	411	4	FSM	ENSMUSG00000058325.7	ENSMUST00000210121.2	411	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	62.0984880832233	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGATGTGTTTCTGTTT	NA	False	NA	4	True	NA	NA	NA	134379183	134384912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_134379222_134384077_134384168_134384475_134384577_134384730
transcript_87306.known	chr7	-	10061	14	FSM	ENSMUSG00000031004.9	ENSMUST00000033310.9	10061	14	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_9	63.2390037685062	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTGGCCTCTCTGACAA	NA	False	NA	-18	True	AATAAA	-19	NA	135318090	135291512	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_135291863_135294808_135295226_135295960_135302797_135303630_135303787_135305796_135305969_135306067_135306187_135306271_135306525_135307338_135307515_135309089_135310050_135310494_135310541_135312573_135312641_135315485_135315602_135315689_135315769_135317776
transcript_8731.nic	chr10	-	1638	10	ISM	ENSMUSG00000020263.15	ENSMUST00000147582.8	3377	14	-102	7915	-34	699	5prime_fragment	FALSE	canonical	3	97	junction_4	6.21825270205921	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACATAGTGCCTTGCATAT	NA	False	NA	NA	False	ATTAAA	-18	NA	83484636	83449423	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_83450167_83453210_83453294_83456561_83456709_83457392_83457452_83457575_83457618_83460482_83460571_83464092_83464165_83464637_83464698_83476869_83476969_83484391
transcript_87310.nnic	chr7	+	1033	6	NNC	ENSMUSG00000054612.5	novel	2894	5	NA	NA	-63	-2081	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	98.1150345258055	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACGTGATGTGGCTGCCCT	NA	False	NA	30	True	ATTAAA	-21	NA	136496279	136729914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_136496417_136521584_136521742_136552996_136553134_136687677_136687839_136723217_136723358_136729613
transcript_87316.known	chr7	+	2894	5	FSM	ENSMUSG00000054612.5	ENSMUST00000081510.4	2894	5	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_1	21.7887585695009	1132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAGAAAGCTGTGTTCT	NA	False	NA	NA	False	AATAAA	-12	NA	136496342	136731995	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_136496417_136552996_136553134_136687677_136687839_136723217_136723358_136729613
transcript_8732.nic	chr10	-	636	4	ISM	ENSMUSG00000020263.15	ENSMUST00000150685.8	774	9	-169	7356	-34	-3423	5prime_fragment	FALSE	canonical	3	105	junction_2	4.78423336480244	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGTTTCCTGGTTTCTCA	NA	False	NA	NA	False	AATAAA	-20	NA	83484636	83463932	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_83464165_83464637_83464698_83476869_83476969_83484391
transcript_87324.nnic	chr7	+	696	4	NIC	ENSMUSG00000054612.5	novel	2894	5	NA	NA	-44	-2081	combination_of_known_splicesites	FALSE	canonical	2	7	junction_2	91.8634251968045	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACGTGATGTGGCTGCCCT	NA	False	NA	30	True	ATTAAA	-21	NA	136496298	136729914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_136496417_136552996_136553134_136723217_136723358_136729613
transcript_87327.nnic	chr7	+	722	4	NIC	ENSMUSG00000054612.5	novel	2894	5	NA	NA	-46	-2081	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	106.094297678999	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACGTGATGTGGCTGCCCT	NA	False	NA	30	True	ATTAAA	-21	NA	136496296	136729914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_136496417_136687677_136687839_136723217_136723358_136729613
transcript_8733.known	chr10	+	1194	6	FSM	ENSMUSG00000087651.4	ENSMUST00000150459.3	1194	6	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_4	8.16333265278342	987	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGATTTCTTAATTATTT	NA	False	NA	6	True	ATTAAA	-19	NA	83558728	83598626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_83558899_83573772_83573798_83593308_83593345_83593997_83594078_83595456_83595495_83597781
transcript_87336.nnic	chr7	-	1593	5	NNC	ENSMUSG00000040139.15	novel	699	5	NA	NA	-281	1	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	92.2506775042872	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTGTCTGGCTTGGTGTG	NA	False	NA	-6	True	ATTAAA	-15	NA	137012772	136977301	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_136978081_136978661_136978847_136989099_136989163_136989268_136989431_137012368
transcript_87337.known	chr7	-	699	5	FSM	ENSMUSG00000040139.15	ENSMUST00000117404.8	699	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	88.1373218336024	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTAAAAATAAAATAAAATA	NA	False	NA	NA	False	NA	NA	NA	137012464	136977865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_136978081_136978683_136978847_136989099_136989163_136989268_136989431_137012368
transcript_87344.known	chr7	-	1126	4	FSM	ENSMUSG00000040139.15	ENSMUST00000068996.13	1126	4	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_1	38.0292285252044	1022	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCTGTCTGGCTTGGTGT	NA	False	NA	-7	True	ATTAAA	-14	NA	137012491	136977302	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_136978081_136989099_136989163_136989268_136989431_137012368
transcript_87348.known	chr7	-	895	2	FSM	ENSMUSG00000040139.15	ENSMUST00000145881.8	895	2	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	0	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCTGTCTGGCTTGGTGT	NA	False	NA	-7	True	ATTAAA	-14	NA	137012485	136977302	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_136978081_137012368
transcript_87360.known	chr7	+	867	2	FSM	ENSMUSG00000031068.9	ENSMUST00000211598.2	867	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAAGCTGGTTTTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	137039417	137043898	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_137039501_137043114
transcript_87361.known	chr7	+	1685	11	FSM	ENSMUSG00000031068.9	ENSMUST00000064404.8	1685	11	0	0	0	0	multi-exon	FALSE	canonical	3	3305	junction_4	243.181434324251	17296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTTGTTCCAGTAAGCTT	NA	False	NA	NA	False	TTTAAA	-17	NA	137039342	137070323	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_137039501_137046707_137046817_137054425_137054501_137055141_137055344_137060851_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137069661
transcript_87362.known	chr7	+	2081	9	FSM	ENSMUSG00000041769.14	ENSMUST00000041097.13	2081	9	0	0	0	0	multi-exon	FALSE	canonical	3	482	junction_4	89.4111814875522	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCACTGCAGTCTTTATTT	NA	False	NA	20	True	AATAAA	-34	NA	138448087	138484786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_138448245_138448340_138448434_138470138_138470237_138471418_138471585_138472118_138472232_138474602_138474781_138475848_138476014_138478184_138478447_138483937
transcript_87367.nnic	chr7	+	1569	5	NIC	ENSMUSG00000041769.14	novel	2081	9	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	3	26	junction_1	301.471806310308	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCACTGCAGTCTTTATTT	NA	False	NA	20	True	AATAAA	-34	NA	138448318	138484786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_138448434_138474602_138474781_138475848_138476014_138478184_138478447_138483937
transcript_87370.nnic	chr7	+	1420	4	NNC	ENSMUSG00000041769.14	novel	2081	9	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_1	319.381694319926	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCACTGCAGTCTTTATTT	NA	False	NA	20	True	AATAAA	-34	NA	138448320	138484786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_138448434_138475817_138476014_138478184_138478447_138483937
transcript_87371.known	chr7	-	1350	2	FSM	ENSMUSG00000041775.8	ENSMUST00000118810.2	1350	2	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAACAGTTTAATTTAAG	NA	False	NA	-17	True	NA	NA	NA	138447986	138437606	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_138438656_138447685
transcript_87372.known	chr7	-	1502	2	FSM	ENSMUSG00000041775.8	ENSMUST00000075667.5	1502	2	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	0	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCACAACCAGTCAACTTGT	NA	False	NA	28	True	NA	NA	NA	138447989	138437561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_138438760_138447685
transcript_87374.known	chr7	+	1938	8	FSM	ENSMUSG00000041769.14	ENSMUST00000155672.8	1938	8	0	0	0	0	multi-exon	FALSE	canonical	3	482	junction_3	92.005767343628	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCCACTGCAGTCTTTA	NA	False	NA	17	True	AATAAA	-31	NA	138448323	138484783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_138448434_138470138_138470237_138471418_138471585_138472118_138472232_138474602_138474781_138475848_138476014_138478184_138478447_138483937
transcript_87376.known	chr7	-	1756	6	FSM	ENSMUSG00000078566.9	ENSMUST00000106112.2	1756	6	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_2	24.8628236529965	511	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCGCTGTACTGGCTAGT	NA	False	NA	NA	False	AGTAAA	-19	NA	138511235	138492564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_138493690_138496108_138496259_138496338_138496446_138499724_138499807_138500409_138500558_138511091
transcript_87380.known	chr7	+	3552	14	FSM	ENSMUSG00000025478.16	ENSMUST00000026551.15	3552	14	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	3.36181128975572	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTGGCTGGCTGCTGTGC	NA	False	NA	NA	False	NA	NA	NA	138665916	138682620	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_138666078_138669425_138669515_138670074_138670260_138671777_138671943_138673521_138673584_138673676_138673758_138674309_138674379_138674772_138674894_138676083_138676241_138676582_138676725_138677737_138677909_138678385_138678566_138679655_138679822_138680817
transcript_87384.known	chr7	+	744	4	FSM	ENSMUSG00000015980.15	ENSMUST00000126213.8	744	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	3.55902608401044	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCAAACTGTTCTCTTCT	NA	False	NA	NA	False	ATTAAA	-19	NA	138813858	138822887	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_138814008_138816785_138816905_138818491_138818616_138822535
transcript_87385.nnic	chr7	+	742	4	NNC	ENSMUSG00000015980.15	novel	527	3	NA	NA	-345	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	4.02768199119819	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAAACTGTTCTCTTCTG	NA	False	NA	NA	False	ATTAAA	-20	NA	138815463	138822888	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_138815610_138816785_138816905_138818491_138818616_138822535
transcript_87387.nnic	chr7	-	1121	3	Antisense	novelGene_ENSMUSG00000015980.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTACTGAGTTCTTTG	NA	False	NA	NA	False	AAAAAG	-22	NA	138814546	138813123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr7_-_138814030_138814135_138814217_138814412
transcript_87390.known	chr7	+	3057	3	FSM	ENSMUSG00000060260.14	ENSMUST00000093993.5	3057	3	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_2	5.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTGCTTCTCTCAACTT	NA	False	NA	NA	False	NA	NA	NA	138828397	138847891	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_138828560_138834685_138836077_138846387
transcript_87391.known	chr7	+	2543	3	FSM	ENSMUSG00000060260.14	ENSMUST00000172136.9	2543	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	19.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAACAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	138828402	138847077	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_138828560_138834685_138836382_138846387
transcript_87394.known	chr7	+	2826	16	FSM	ENSMUSG00000025477.15	ENSMUST00000106098.8	2826	16	0	0	0	0	multi-exon	TRUE	canonical	3	132	junction_13	16.0850517216728	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGCTGCTTATTCTCC	NA	False	NA	19	True	AATAAA	-20	NA	138969024	139159568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_138969381_139033969_139034012_139057910_139058012_139061547_139061636_139091323_139091388_139096546_139096651_139103752_139103806_139105577_139105698_139118094_139118180_139138789_139138886_139138979_139139055_139147279_139147354_139154859_139154972_139157265_139157335_139158097_139158186_139158269
transcript_87395.known	chr7	-	1299	3	FSM	ENSMUSG00000041309.18	ENSMUST00000106095.3	1299	3	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_2	2	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTGCACATCGTGTTTC	NA	False	NA	-8	True	AATAAA	-36	NA	139162706	139161135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_139161605_139161796_139161970_139162049
transcript_87396.nic	chr7	-	1220	2	ISM	ENSMUSG00000041309.18	ENSMUST00000097974.9	1907	4	959	0	952	0	3prime_fragment	FALSE	canonical	3	11	junction_1	0	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGGCTCCGCAGGCGCCTT	NA	False	NA	-9	True	AATAAA	-20	NA	139161754	139159291	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_139159538_139160780
transcript_87398.known	chr7	+	483	1	FSM	ENSMUSG00000056777.6	ENSMUST00000072532.6	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTACACAAAGAAGTAAAAT	NA	False	NA	NA	False	AAAAAG	-45	NA	139299314	139299797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_139299300_139299800
transcript_87399.known	chr7	+	1227	2	FSM	ENSMUSG00000047751.10	ENSMUST00000168457.3	1227	2	0	0	0	0	multi-exon	FALSE	canonical	3	805	junction_1	0	4684	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGTGAATGAATTCGGAC	NA	False	NA	NA	False	AATAAA	-20	NA	139523701	139525025	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_139524343_139524439
transcript_87400.known	chr7	-	1161	7	FSM	ENSMUSG00000073795.12	ENSMUST00000097970.9	1161	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.06718737290547	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGCCCTGGTATGTGCA	NA	False	NA	NA	False	NA	NA	NA	139558668	139552215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_139552521_139555774_139555872_139555953_139556042_139556387_139556587_139556984_139557136_139557946_139558059_139558459
transcript_87403.known	chr7	-	952	6	FSM	ENSMUSG00000073795.12	ENSMUST00000210254.2	952	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.16619037896906	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAGCCTCCATGTGAGAC	NA	False	NA	NA	False	NA	NA	NA	139558632	139552354	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_139552521_139555890_139556042_139556387_139556587_139556984_139557136_139557946_139558059_139558459
transcript_87405.known	chr7	-	898	6	FSM	ENSMUSG00000073795.12	ENSMUST00000209335.2	898	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.16619037896906	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAGCCTCCATGTGAGAC	NA	False	NA	NA	False	NA	NA	NA	139558632	139552354	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_139552521_139555774_139555872_139556387_139556587_139556984_139557136_139557946_139558059_139558459
transcript_87410.known	chr7	-	2960	18	FSM	ENSMUSG00000025474.10	ENSMUST00000026547.9	2960	18	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_17	73.93539684464	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGCATTATTACTG	NA	False	NA	NA	False	NA	NA	NA	139616179	139575908	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525_139613712_139616008
transcript_87412.known	chr7	-	3060	18	FSM	ENSMUSG00000025474.10	ENSMUST00000211638.2	3060	18	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_17	64.0289186395126	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTCCTGCGCAATGAGCT	NA	False	NA	NA	False	NA	NA	NA	139616582	139575960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525_139613712_139616259
transcript_87416.known	chr7	-	3341	17	FSM	ENSMUSG00000025474.10	ENSMUST00000209930.2	3341	17	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_16	76.1033169037329	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTGAGTTTCTGTCTTG	NA	False	NA	NA	False	NA	NA	NA	139616242	139575880	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525_139613712_139616008
transcript_87432.nnic	chr7	+	1023	5	NIC	ENSMUSG00000025470.12	novel	1076	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	11	junction_1	147.438758472798	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCATCTGTTCTTCTTCATG	NA	False	NA	19	True	AATAAA	-16	NA	139616303	139620515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_139616520_139617132_139617335_139617428_139617554_139619238_139619359_139620155
transcript_87442.known	chr7	+	1076	6	FSM	ENSMUSG00000025470.12	ENSMUST00000168194.3	1076	6	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	28.032837887021	999	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCATCTGTTCTTCTTCATG	NA	False	NA	19	True	AATAAA	-16	NA	139616324	139620515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_139616520_139616732_139616807_139617132_139617335_139617428_139617554_139619238_139619359_139620155
transcript_87443.known	chr7	-	975	6	FSM	ENSMUSG00000025468.16	ENSMUST00000211283.2	975	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	13.4074606096755	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCTGGGTCGTGGTTTCTC	NA	False	NA	-7	True	AGTAAA	-11	NA	139662461	139649799	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_139649947_139650224_139650578_139651496_139651611_139652497_139652612_139653853_139654014_139662374
transcript_87445.nnic	chr7	-	437	3	Intergenic	novelGene_119	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAAACCTCCAAGTCCAC	581	False	NA	NA	False	NA	NA	NA	139659598	139657875	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr7_-_139657984_139658797_139658927_139659398
transcript_87446.nic	chr7	-	852	2	ISM	ENSMUSG00000025468.16	ENSMUST00000211044.2	1029	6	11211	6	11211	0	3prime_fragment	FALSE	canonical	3	34	junction_1	0	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCTGGGTCGTGGTTTCTC	9250	False	NA	-7	True	AGTAAA	-11	NA	139650929	139649799	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_-_139649947_139650224
transcript_87452.nic	chr7	-	883	6	NIC	ENSMUSG00000025466.20	novel	685	6	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_5	162.288138814887	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1499	False	NA	0	True	NA	NA	NA	139682326	139679382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139681993
transcript_87459.known	chr7	+	620	5	FSM	ENSMUSG00000025467.9	ENSMUST00000026540.9	620	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_4	1.08972473588517	221	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAATGCGTGTCTTTAAG	NA	False	NA	NA	False	AATAAA	-18	NA	139673307	139677113	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_139673382_139674944_139675012_139676062_139676116_139676586_139676694_139676794
transcript_87467.known	chr7	-	685	6	FSM	ENSMUSG00000025466.20	ENSMUST00000026539.14	685	6	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_5	86.8506764510214	1769	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1471	False	NA	0	True	NA	NA	NA	139682354	139679382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139682219
transcript_87468.known	chr7	-	536	6	FSM	ENSMUSG00000025466.20	ENSMUST00000142105.8	536	6	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	173.251262621662	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1536	False	NA	0	True	NA	NA	NA	139682289	139679382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_139679536_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139682219
transcript_87469.known	chr7	-	452	4	FSM	ENSMUSG00000025466.20	ENSMUST00000147713.8	452	4	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	198.521759232808	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTGACTGTAAAGTGAGTG	1606	False	NA	NA	False	NA	NA	NA	139682219	139681015	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_139681102_139681244_139681316_139681513_139681583_139681993
transcript_87480.known	chr7	+	4655	7	FSM	ENSMUSG00000025464.16	ENSMUST00000026537.13	4655	7	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_2	25.7552583627758	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAAATATAAATAAATG	NA	False	NA	NA	False	NA	NA	NA	139705569	139717137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_139705796_139706238_139706729_139707420_139707621_139708930_139709184_139711559_139711673_139712293_139712452_139713922
transcript_87490.known	chr7	+	1024	5	FSM	ENSMUSG00000025464.16	ENSMUST00000097967.4	1024	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	115.705174905879	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGTGTAGAGTACTTCT	NA	False	NA	22	True	CATAAA	-14	NA	139705620	139714247	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_139705796_139708930_139709184_139711559_139711673_139712293_139712452_139713922
transcript_87491.known	chr7	-	1557	8	FSM	ENSMUSG00000025465.14	ENSMUST00000026538.13	1557	8	0	0	0	0	multi-exon	FALSE	canonical	3	1613	junction_2	95.2071854602651	6600	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGTGTGTTTTTAACT	NA	False	NA	-1	True	NA	NA	NA	139696389	139685622	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_139686291_139687996_139688065_139689899_139690020_139690451_139690557_139691608_139691709_139692331_139692460_139692848_139693047_139696219
transcript_87492.known	chr7	-	2474	6	FSM	ENSMUSG00000025465.14	ENSMUST00000155647.2	2474	6	0	0	0	0	multi-exon	FALSE	canonical	3	1613	junction_2	107.86027999222	533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCGTAACTATTTGTGTGT	NA	False	NA	-9	True	NA	NA	NA	139696302	139685630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_139686291_139687996_139688065_139689899_139690020_139690451_139690557_139691608_139693047_139696219
transcript_87505.known	chr7	+	1595	11	FSM	ENSMUSG00000039018.16	ENSMUST00000036977.9	1595	11	0	0	0	0	multi-exon	FALSE	canonical	3	445	junction_3	26.942345851837	1132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCGTTTTCATTGTGCAC	NA	False	NA	NA	False	NA	NA	NA	139717476	139730699	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_139717687_139718231_139718297_139720108_139720214_139723650_139723732_139724253_139724311_139724542_139724634_139725910_139725973_139726723_139726821_139727165_139727248_139729660_139729774_139730067
transcript_87506.known	chr7	+	2133	3	FSM	ENSMUSG00000039018.16	ENSMUST00000150667.8	2133	3	0	0	0	0	multi-exon	FALSE	canonical	3	458	junction_2	19	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTTCTCTTGTCACTAC	NA	False	NA	NA	False	ATTAAA	-23	NA	139717561	139722051	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_139717687_139718231_139718297_139720108
transcript_87507.nnic	chr7	+	649	3	NIC	ENSMUSG00000025461.12	novel	3454	14	NA	NA	3580	0	combination_of_known_splicesites	TRUE	canonical	1	2	junction_1	0.5	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCAGTCTGTTACCAGAT	8421	False	NA	NA	False	ATTAAA	-20	NA	139808435	139811058	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_139808732_139810212_139810389_139810881
transcript_87510.nnic	chr7	-	1450	13	NNC	ENSMUSG00000025480.6	novel	1460	13	NA	NA	-44	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_12	46.3269629913294	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCTATATTGTGTGTG	NA	False	NA	0	True	AATAAA	-18	NA	140367809	140357141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_-_140357646_140357829_140357912_140358047_140358159_140358221_140358346_140358422_140358490_140358977_140359042_140359249_140359340_140359506_140359562_140359795_140359844_140360369_140360445_140360787_140360848_140361939_140362003_140367702
transcript_87511.nic	chr7	-	1431	12	NIC	ENSMUSG00000025480.6	novel	1460	13	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_11	47.3902385596844	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCTATATTGTGTGTG	NA	False	NA	0	True	AATAAA	-18	NA	140367799	140357141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_140357646_140357829_140357912_140358047_140358159_140358221_140358346_140358422_140358490_140358977_140359042_140359249_140359340_140359506_140359562_140359795_140359844_140360369_140360445_140360787_140360848_140367648
transcript_87515.nnic	chr7	-	1258	9	NIC	ENSMUSG00000025480.6	novel	1460	13	NA	NA	-44	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_8	52.9526616422631	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCTATATTGTGTGTG	NA	False	NA	0	True	AATAAA	-18	NA	140367809	140357141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_140357646_140357829_140357912_140358047_140358159_140358221_140358346_140358422_140358490_140358977_140359042_140359249_140359340_140359506_140359562_140367648
transcript_87518.known	chr7	-	1460	13	FSM	ENSMUSG00000025480.6	ENSMUST00000026553.6	1460	13	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_11	16.7779617355625	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCTATATTGTGTGTG	NA	False	NA	0	True	AATAAA	-18	NA	140367765	140357141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140357646_140357829_140357912_140358047_140358159_140358221_140358346_140358422_140358490_140358977_140359042_140359249_140359340_140359506_140359562_140359795_140359844_140360369_140360445_140360787_140360848_140361939_140362003_140367648
transcript_87519.known	chr7	+	2577	11	FSM	ENSMUSG00000025485.14	ENSMUST00000210708.2	2577	11	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	77.5539167289441	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGCAGATGGGGATTCTG	NA	False	NA	NA	False	AAGAAA	-36	NA	140437363	140443402	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140437468_140437757_140437806_140437894_140438186_140438279_140438486_140438775_140438868_140439351_140439503_140440789_140440886_140440985_140441131_140441208_140441354_140441752_140441873_140442223
transcript_87521.known	chr7	+	3406	10	FSM	ENSMUSG00000025485.14	ENSMUST00000026558.7	3406	10	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_2	23.6648408268052	517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCAACATGCTAGATTGCC	NA	False	NA	NA	False	AAGAAA	-31	NA	140436869	140443643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140437468_140437757_140437806_140437894_140438486_140438775_140438868_140439351_140439503_140440789_140440886_140440985_140441131_140441208_140441354_140441752_140441873_140442223
transcript_87529.known	chr7	-	1461	7	FSM	ENSMUSG00000025486.18	ENSMUST00000026559.14	1461	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_6	79.4187215543875	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCATCCTGTCTCTTTG	NA	False	NA	-14	True	AATAAA	-14	NA	140462222	140443582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140443997_140444887_140445098_140449401_140449564_140456266_140456368_140457562_140457796_140457869_140458059_140462070
transcript_87534.known	chr7	+	1128	7	FSM	ENSMUSG00000025482.12	ENSMUST00000026555.12	1128	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTTTATCTTGGGAAAAGG	NA	False	NA	NA	False	AATAAA	-20	NA	140427717	140430931	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140427851_140428259_140428377_140428523_140428725_140429104_140429207_140429362_140429485_140430148_140430290_140430619
transcript_87541.known	chr7	+	719	4	FSM	ENSMUSG00000025481.13	ENSMUST00000106050.8	719	4	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_1	5.43650214343336	1731	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAAGATATTCTAGCTGCC	NA	False	NA	-52	True	NA	NA	NA	140414930	140417800	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140415172_140415524_140415665_140416659_140416796_140417598
transcript_87545.known	chr7	+	688	4	FSM	ENSMUSG00000025481.13	ENSMUST00000211372.2	688	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	116.448367194316	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAATCTGAACCTATCATT	NA	False	NA	27	True	AATAAA	-17	NA	140415184	140417879	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140415316_140415524_140415665_140416659_140416796_140417598
transcript_87546.known	chr7	+	716	4	FSM	ENSMUSG00000025481.13	ENSMUST00000185612.3	716	4	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	119.276522790065	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAATCTGAACCTATCATT	NA	False	NA	27	True	AATAAA	-17	NA	140415209	140417879	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140415369_140415524_140415665_140416659_140416796_140417598
transcript_87553.known	chr7	+	455	3	FSM	ENSMUSG00000038801.7	ENSMUST00000035300.7	455	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTGGCTTCTCTCTCTC	NA	False	NA	NA	False	AATAAA	-44	NA	140425459	140426682	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140425545_140425960_140426161_140426512
transcript_87554.known	chr7	-	3851	3	FSM	ENSMUSG00000060314.14	ENSMUST00000106052.2	3851	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	4	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCACATTGGAGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	140402045	140389601	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140393228_140398500_140398628_140401947
transcript_87557.known	chr7	-	1882	1	FSM	ENSMUSG00000025484.10	ENSMUST00000210157.2	1882	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	140436183	140434301	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140434300_140436200
transcript_87558.known	chr7	-	1223	1	FSM	ENSMUSG00000025486.18	ENSMUST00000210398.2	1223	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	244	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGTCA	NA	False	NA	NA	False	NA	NA	NA	140462209	140460986	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140461000_140462200
transcript_87559.known	chr7	+	1989	13	FSM	ENSMUSG00000025487.16	ENSMUST00000026560.14	1989	13	0	0	0	0	multi-exon	FALSE	canonical	3	1065	junction_10	109.792987025584	8213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGTGCTTCTGTTCTT	NA	False	NA	28	True	AATAAA	-16	NA	140461880	140478555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140462480_140463412_140463492_140466300_140466336_140466423_140466480_140466714_140466759_140466931_140467019_140469217_140469390_140470244_140470325_140470407_140470534_140474393_140474457_140477329_140477411_140477520_140477638_140478105
transcript_87560.known	chr7	-	2791	4	FSM	ENSMUSG00000060314.14	ENSMUST00000080651.13	2791	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	25.6645020732269	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAGATTTCCTTATTTAC	NA	False	NA	NA	False	AATAAA	-20	NA	140402091	140387361	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140388056_140391401_140393228_140398500_140398628_140401947
transcript_87561.known	chr7	+	890	3	FSM	ENSMUSG00000025481.13	ENSMUST00000026554.11	890	3	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_1	2	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAATCTGAACCTATCATT	NA	False	NA	27	True	AATAAA	-17	NA	140415191	140417879	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140415665_140416659_140416796_140417598
transcript_87562.known	chr7	-	354	4	FSM	ENSMUSG00000025484.10	ENSMUST00000211590.2	354	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	52.0917993119412	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACACCTGGCATCCTGGTT	NA	False	NA	NA	False	NA	NA	NA	140436159	140434337	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140434537_140434677_140434715_140434986_140435079_140436133
transcript_87563.known	chr7	-	719	3	FSM	ENSMUSG00000025484.10	ENSMUST00000210195.2	719	3	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	0.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCTTTGAAATTATCATCA	NA	False	NA	NA	False	NA	NA	NA	140436197	140434282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140434537_140434677_140435079_140436133
transcript_87564.known	chr7	-	1416	7	FSM	ENSMUSG00000025486.18	ENSMUST00000106048.10	1416	7	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_6	42.0135560133737	865	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCATCCTGTCTCTTTG	NA	False	NA	-14	True	AATAAA	-14	NA	140461782	140443582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140443997_140444887_140445098_140449401_140449564_140456266_140456368_140457562_140457796_140457869_140458059_140461675
transcript_87565.known	chr7	+	485	3	FSM	ENSMUSG00000025481.13	ENSMUST00000210916.2	485	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	125.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGAGAGTTTCAACACC	NA	False	NA	6	True	NA	NA	NA	140415554	140417858	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140415665_140416659_140416796_140417619
transcript_87566.known	chr7	-	360	2	FSM	ENSMUSG00000025488.10	ENSMUST00000026561.10	360	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTGCTCGTGCAGATTCT	NA	False	NA	NA	False	ATTAAA	-14	NA	140480359	140478857	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140479003_140480144
transcript_87567.known	chr7	+	2981	14	FSM	ENSMUSG00000062031.14	ENSMUST00000079403.11	2981	14	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	11.3032434995212	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTGTGATGGATTCATG	NA	False	NA	15	True	ATTAAA	-27	NA	140521493	140527577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140521557_140522197_140522479_140522898_140523110_140523189_140523626_140524557_140524678_140524863_140524996_140525150_140525263_140525367_140525441_140525538_140525676_140525792_140525927_140526019_140526116_140526243_140526342_140526414_140526627_140526701
transcript_87569.nic	chr7	+	618	2	ISM	ENSMUSG00000062031.14	ENSMUST00000164580.3	3001	14	-5	4855	-5	-311	5prime_fragment	FALSE	canonical	3	42	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGAAAAAGCCGCCTCCCA	NA	False	NA	NA	False	NA	NA	NA	140521455	140522714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr7_+_140521557_140522197
transcript_8757.nnic	chr10	-	895	4	NNC	ENSMUSG00000097076.2	novel	1334	4	NA	NA	-1062	1073	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_1	10.8012344973464	33	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATAGGCGTTTTTGACTG	8397	False	NA	-3	True	AATAAA	-18	NA	84390264	84382207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_84382384_84383922_84384062_84385083_84385495_84390095
transcript_87570.known	chr7	+	3145	13	FSM	ENSMUSG00000062031.14	ENSMUST00000169736.8	3145	13	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	11.7505910016854	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCAGAGTGTGTGATGGA	NA	False	NA	9	True	ATTAAA	-21	NA	140521478	140527571	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140521557_140522197_140522479_140522898_140523110_140523189_140523626_140524557_140524678_140524863_140525263_140525367_140525441_140525538_140525676_140525792_140525927_140526019_140526116_140526243_140526342_140526414_140526627_140526701
transcript_87581.known	chr7	-	655	2	FSM	ENSMUSG00000060591.10	ENSMUST00000081649.10	655	2	0	0	0	0	multi-exon	FALSE	canonical	3	9574	junction_1	0	47565	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGACTCACTGTTCTCT	NA	False	NA	-12	True	AATAAA	-22	NA	140535900	140534749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140535087_140535582
transcript_87584.known	chr7	-	495	2	FSM	ENSMUSG00000110104.2	ENSMUST00000211129.2	495	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCTGAACCGAGGACAACC	NA	False	NA	NA	False	NA	NA	NA	140535850	140529134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140529362_140535582
transcript_87589.known	chr7	+	882	3	FSM	ENSMUSG00000025491.15	ENSMUST00000106042.9	882	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	569	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTAGTCCTGTGTTGAGT	NA	False	NA	24	True	AATAAA	-28	NA	140547133	140549738	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140547480_140548152_140548352_140549401
transcript_8759.nnic	chr10	-	759	3	NNC	ENSMUSG00000097076.2	novel	1334	4	NA	NA	-1062	1076	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	15.5	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGGCGTTTTTGACTGTGT	8397	False	NA	0	True	AATAAA	-21	NA	84390264	84382204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_84382384_84385083_84385495_84390095
transcript_87590.known	chr7	+	560	3	FSM	ENSMUSG00000025491.15	ENSMUST00000106040.8	560	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	567.5	2046	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTAGTCCTGTGTTGAGT	NA	False	NA	24	True	AATAAA	-28	NA	140547940	140549738	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140547965_140548152_140548352_140549401
transcript_87592.known	chr7	+	736	2	FSM	ENSMUSG00000025491.15	ENSMUST00000026564.9	736	2	0	0	0	0	multi-exon	FALSE	canonical	3	1139	junction_1	0	10318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTAGTCCTGTGTTGAGT	NA	False	NA	24	True	AATAAA	-28	NA	140547952	140549738	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140548352_140549401
transcript_87595.known	chr7	-	678	2	FSM	ENSMUSG00000025492.7	ENSMUST00000026565.7	678	2	0	0	0	0	multi-exon	FALSE	canonical	3	1854	junction_1	0	18939	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTGCTTTTATTCCTC	NA	False	NA	2	True	AATAAA	-23	NA	140590683	140589498	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140589803_140590309
transcript_87596.known	chr7	-	813	3	FSM	ENSMUSG00000059108.5	ENSMUST00000211330.2	813	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGGTGAGACTTCCTATC	NA	False	NA	NA	False	AATAAA	-17	NA	140597471	140595613	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140596073_140596612_140596781_140597285
transcript_87598.known	chr7	-	663	2	FSM	ENSMUSG00000059108.5	ENSMUST00000081924.5	663	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGATTGTGGTGAGACTTC	NA	False	NA	NA	False	AATAAA	-12	NA	140596821	140595618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140596073_140596612
transcript_87599.nnic	chr7	+	1273	7	NNC	ENSMUSG00000055629.6	novel	476	3	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	76.3728063878469	94	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTTCTGTGAGTGTTC	NA	False	NA	24	True	AATGAA	-25	NA	140650148	140652313	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_140650225_140650323_140650608_140650700_140650855_140650954_140651028_140651120_140651275_140651549_140651677_140651908
transcript_8760.nnic	chr10	-	2434	3	NNC	ENSMUSG00000097076.2	novel	1334	4	NA	NA	-1062	1073	at_least_one_novel_splicesite	FALSE	canonical	1	11	junction_1	10	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATAGGCGTTTTTGACTG	8397	False	NA	-3	True	AATAAA	-18	NA	84390264	84382207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_84384062_84385083_84385495_84390095
transcript_87601.known	chr7	+	1425	7	FSM	ENSMUSG00000054065.13	ENSMUST00000160403.8	1425	7	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	7.83156008298049	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCCCAGCTCCGTGTGT	614	False	NA	16	True	ATTAAA	-14	NA	140668058	140670420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140668315_140668393_140668565_140668651_140668838_140669157_140669312_140669481_140669675_140669768_140669857_140670043
transcript_87602.known	chr7	+	2848	13	FSM	ENSMUSG00000054065.13	ENSMUST00000066873.5	2848	13	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	30.7431112428279	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCAGCTCCGTGTGTTTC	NA	False	NA	19	True	ATTAAA	-17	NA	140659672	140670423	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140660015_140662254_140662335_140662467_140663100_140663175_140663300_140663967_140664173_140667548_140667724_140668196_140668315_140668393_140668565_140668651_140668838_140669157_140669312_140669481_140669675_140669768_140669857_140670043
transcript_87608.nnic	chr7	-	1823	10	NIC	ENSMUSG00000025494.9	novel	1990	10	NA	NA	-153	0	combination_of_known_splicesites	TRUE	canonical	3	90	junction_9	19.9616917069288	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	-30	True	AATAAA	-17	NA	140676805	140671087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140676532
transcript_87609.known	chr7	-	1612	10	FSM	ENSMUSG00000025494.9	ENSMUST00000209294.2	1612	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_9	39.3474550920669	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCGGGCTTATTTCTGTC	NA	False	NA	-32	True	AATAAA	-15	NA	140680455	140671089	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140680391
transcript_87620.nnic	chr7	-	2124	9	NIC	ENSMUSG00000025494.9	novel	1897	9	NA	NA	-153	0	intron_retention	FALSE	canonical	3	90	junction_8	21.1527185014125	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	-30	True	AATAAA	-17	NA	140676805	140671087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_-_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140676532
transcript_87621.known	chr7	-	1897	9	FSM	ENSMUSG00000025494.9	ENSMUST00000210167.2	1897	9	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_8	41.6921380478382	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	-30	True	AATAAA	-17	NA	140680437	140671087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140680391
transcript_87627.known	chr7	-	3019	24	FSM	ENSMUSG00000054662.9	ENSMUST00000067836.9	3019	24	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_10	30.0592986723404	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTAGATCCAGTTTCTA	NA	False	NA	-8	True	AATAAA	-28	NA	140697719	140681124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684058_140684154_140684298_140684395_140684494_140684581_140684640_140686675_140686788_140686963_140687001_140687079_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
transcript_8764.known	chr10	+	2725	10	FSM	ENSMUSG00000020034.8	ENSMUST00000020223.8	2725	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	3.1308895119123	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTAATCTTTTCATTCTTT	NA	False	NA	NA	False	AATAAA	-22	NA	84412489	84450223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_84412877_84420611_84420920_84422967_84423104_84425747_84425869_84426951_84427173_84430511_84430649_84440370_84440553_84440749_84440932_84444328_84444502_84449345
transcript_87644.known	chr7	-	3088	23	FSM	ENSMUSG00000054662.9	ENSMUST00000210496.2	3088	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	49.4689359076452	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCATGATGTAGATCCAG	NA	False	NA	-14	True	AATAAA	-22	NA	140697686	140681130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682974_140683148_140683904_140684058_140684150_140684298_140684395_140684494_140684581_140684640_140686675_140686788_140686963_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
transcript_87653.known	chr7	+	3624	12	FSM	ENSMUSG00000025495.16	ENSMUST00000026568.10	3624	12	0	0	0	0	multi-exon	FALSE	canonical	3	293	junction_1	17.146910185967	1127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACAACAAAAGTTGGTTG	6810	False	NA	NA	False	NA	NA	NA	140711198	140737519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140711431_140715221_140715324_140723005_140723089_140726993_140727062_140731562_140731698_140732104_140732156_140732687_140732802_140732887_140733007_140734265_140734381_140734469_140734616_140734723_140734910_140735246
transcript_87654.known	chr7	+	655	4	FSM	ENSMUSG00000025495.16	ENSMUST00000173721.8	655	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	147.981980885061	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTTAAAAAATAAACACTT	6868	False	NA	NA	False	TATAAA	-30	NA	140711256	140723555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140711431_140715221_140715324_140723005_140723089_140723259
transcript_87655.known	chr7	+	2119	8	FSM	ENSMUSG00000025495.16	ENSMUST00000174706.8	2119	8	0	0	0	0	multi-exon	FALSE	canonical	3	293	junction_1	19.06701393528	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAAGGCTGCTGGCTCTCT	6825	False	NA	NA	False	AATAAA	-21	NA	140711213	140734236	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140711431_140715221_140715324_140723005_140723089_140726993_140727062_140731562_140731698_140732104_140732156_140732687_140732802_140732887
transcript_87657.known	chr7	-	1658	10	FSM	ENSMUSG00000038650.16	ENSMUST00000210314.2	1658	10	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_9	176.376561249007	732	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAAGGTCCTTGTCGTTCTT	NA	False	NA	NA	False	ATTAAA	-16	NA	140748602	140740238	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140748486
transcript_87658.known	chr7	-	1656	10	FSM	ENSMUSG00000038650.16	ENSMUST00000167493.9	1656	10	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_9	147.871899850621	526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAAGGTCCTTGTCGTTC	7992	False	NA	NA	False	ATTAAA	-14	NA	140752770	140740240	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140752654
transcript_87661.known	chr7	-	580	1	FSM	ENSMUSG00000110275.2	ENSMUST00000211731.2	580	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4180	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATACTTGGCTGAACTGG	2385	False	NA	-83	True	GGGGCT	-31	NA	140758377	140757797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140757800_140758400
transcript_87663.known	chr7	-	2828	6	FSM	ENSMUSG00000025499.19	ENSMUST00000026572.11	2828	6	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_1	141.994366085419	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTATCTCTGGTTCTCCTG	NA	False	NA	NA	False	AATAAA	-19	NA	140773873	140769017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140771108_140771254_140771381_140772043_140772204_140772354_140772534_140772742_140772895_140773752
transcript_87664.known	chr7	-	2272	6	FSM	ENSMUSG00000025499.19	ENSMUST00000168550.8	2272	6	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	252.24797323269	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTAGCAGGCTGGGTC	NA	False	NA	NA	False	NA	NA	NA	140773917	140769846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140771381_140771867_140771950_140772043_140772204_140772354_140772534_140772742_140772895_140773752
transcript_87667.known	chr7	-	1199	5	FSM	ENSMUSG00000025499.19	ENSMUST00000097957.11	1199	5	0	0	0	0	multi-exon	FALSE	canonical	3	437	junction_1	76.3392919799496	582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTCTGGCTGGAAGTA	NA	False	NA	-2	True	AGTAAA	-18	NA	140773918	140770838	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140771381_140772043_140772204_140772354_140772534_140772742_140772895_140773752
transcript_87668.known	chr7	-	1122	5	FSM	ENSMUSG00000025499.19	ENSMUST00000124971.2	1122	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	242.211039178647	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACTTGTCTCTGGCTGGA	NA	False	NA	-6	True	AGTAAA	-14	NA	140773795	140770842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140771381_140772043_140772254_140772354_140772534_140772742_140772895_140773752
transcript_87669.known	chr7	-	1073	5	FSM	ENSMUSG00000025499.19	ENSMUST00000124314.3	1073	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	269.37183872855	427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGTCTCTGGCTGGAAGT	328	False	NA	-3	True	AGTAAA	-17	NA	140772853	140770839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140771381_140771867_140771950_140772043_140772204_140772354_140772534_140772742
transcript_8767.known	chr10	+	4975	28	FSM	ENSMUSG00000034453.9	ENSMUST00000077175.7	4975	28	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_10	22.7726281441689	624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGTCTGAGAGGTGATGT	NA	False	NA	22	True	NA	NA	NA	84458155	84563042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_84458403_84464113_84464147_84464346_84464404_84464490_84464556_84467648_84467725_84468318_84468420_84470764_84470857_84473918_84474037_84475605_84475715_84482659_84482783_84488537_84488658_84491808_84491944_84503185_84503348_84509191_84509393_84510420_84510584_84512746_84512901_84515609_84515685_84516229_84516329_84520040_84520169_84528660_84528871_84531418_84531578_84532812_84532931_84535262_84535406_84549492_84549597_84550108_84550276_84554273_84554388_84556207_84556382_84561514
transcript_87672.known	chr7	+	2502	13	FSM	ENSMUSG00000038637.16	ENSMUST00000070458.11	2502	13	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	5.23609269080167	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCCTGCCTGGCCTGGCT	416	False	NA	10	True	AATAAA	-14	NA	140774088	140789962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140774531_140775820_140775892_140776894_140777083_140778186_140778275_140779691_140779753_140785375_140785473_140785548_140785750_140786247_140786432_140786860_140787023_140787098_140787164_140787399_140787537_140787743_140787884_140789296
transcript_87673.known	chr7	+	2197	13	FSM	ENSMUSG00000038637.16	ENSMUST00000047093.11	2197	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	6.88597608670453	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGCCTGCCTGGCCTGG	1318	False	NA	8	True	AATAAA	-12	NA	140774990	140789960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140775130_140775820_140775892_140776894_140777083_140778186_140778275_140779691_140779753_140785375_140785473_140785548_140785750_140786247_140786432_140786860_140787023_140787098_140787164_140787399_140787537_140787743_140787884_140789296
transcript_87676.known	chr7	+	2390	12	FSM	ENSMUSG00000038637.16	ENSMUST00000084446.9	2390	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	7.43900819835592	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGGCCTGGCTGACCTA	397	False	NA	16	True	AATAAA	-20	NA	140774069	140789968	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140774531_140775820_140775892_140776894_140777083_140778186_140778275_140779691_140779753_140785375_140785473_140785548_140785750_140786247_140786432_140786860_140787023_140787098_140787164_140787743_140787884_140789296
transcript_87683.known	chr7	+	1525	6	FSM	ENSMUSG00000038618.13	ENSMUST00000046890.12	1525	6	0	0	0	0	multi-exon	FALSE	canonical	3	288	junction_1	23.1395764870492	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGTGTGTCCTGAGGTT	NA	False	NA	20	True	AATAAA	-17	NA	140795772	140798571	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140795854_140796633_140796765_140796912_140797626_140797798_140797931_140798002_140798082_140798182
transcript_8769.known	chr10	+	1387	12	FSM	ENSMUSG00000034453.9	ENSMUST00000213263.2	1387	12	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_10	24.1866023975504	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATTTTTCACGCGTTACT	NA	False	NA	NA	False	AATAGA	-21	NA	84458156	84492055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_84458403_84464113_84464147_84464346_84464404_84464490_84464556_84467648_84467725_84468318_84468420_84470764_84470857_84473918_84474037_84475605_84475715_84482659_84482783_84488537_84488658_84491808
transcript_87691.known	chr7	+	1560	5	FSM	ENSMUSG00000038618.13	ENSMUST00000209500.2	1560	5	0	0	0	0	multi-exon	FALSE	canonical	3	288	junction_1	22.576259654779	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTTCAGTGTGTCCTGAG	NA	False	NA	17	True	AATAAA	-14	NA	140795806	140798568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140795854_140796633_140796765_140796912_140797626_140797798_140798082_140798182
transcript_87693.nnic	chr7	+	844	5	NIC	ENSMUSG00000038618.13	novel	1525	6	NA	NA	-32	0	combination_of_known_splicesites	TRUE	canonical	3	36	junction_2	126.772187407175	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGTGTGTCCTGAGGTT	NA	False	NA	20	True	AATAAA	-17	NA	140795740	140798571	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr7_+_140795854_140796633_140796765_140797798_140797931_140798002_140798082_140798182
transcript_87701.known	chr7	+	5248	18	FSM	ENSMUSG00000038611.18	ENSMUST00000106027.9	5248	18	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_2	28.6346754247049	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGGTACCTGTCTGCACC	NA	False	NA	-40	True	AAGAAA	-33	NA	140808701	140842539	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140808805_140811139_140811256_140812331_140812455_140817409_140817616_140820797_140820882_140823690_140823810_140826759_140826858_140827133_140827310_140828292_140828423_140834776_140834905_140836410_140836593_140836715_140836836_140837256_140837412_140837944_140840621_140840872_140841028_140841125_140841456_140841688_140841818_140842321
transcript_87702.known	chr7	+	5271	17	FSM	ENSMUSG00000038611.18	ENSMUST00000155123.8	5271	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	62.4608627462029	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACTTTTCTATGGACTG	NA	False	NA	76	True	NA	NA	NA	140808696	140842655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140808805_140811139_140811256_140812331_140812455_140817409_140817616_140820797_140820882_140823690_140823810_140827133_140827310_140828292_140828423_140834776_140834905_140836410_140836593_140836715_140836836_140837256_140837412_140837944_140840621_140840872_140841028_140841125_140841456_140841688_140841818_140842321
transcript_87703.known	chr7	-	507	4	FSM	ENSMUSG00000038580.14	ENSMUST00000167790.3	507	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	2.94392028877595	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCTGGTCTTTTAGCTC	NA	False	NA	NA	False	AATAAA	-11	NA	140859044	140858250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140858435_140858530_140858636_140858745_140858848_140858928
transcript_87704.known	chr7	-	617	3	FSM	ENSMUSG00000038580.14	ENSMUST00000210928.2	617	3	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_1	1	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTTAGCTCATGGTGTG	NA	False	NA	NA	False	AATAAA	-19	NA	140859036	140858242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140858435_140858530_140858848_140858928
transcript_87705.known	chr7	+	2799	4	FSM	ENSMUSG00000025496.6	ENSMUST00000026569.6	2799	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1.4142135623731	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGGTCTGGGTGGCTAG	NA	False	NA	NA	False	ATTAAA	-29	NA	140871918	140876377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140872227_140873625_140873739_140873825_140874398_140874571
transcript_87706.known	chr7	+	959	5	FSM	ENSMUSG00000025505.17	ENSMUST00000126510.8	959	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.12132034355964	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGACCATCATGGACAGG	727	False	NA	NA	False	NA	NA	NA	140907800	140916130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140908180_140912822_140912843_140913550_140913645_140913923_140914017_140915757
transcript_87707.known	chr7	+	905	2	FSM	ENSMUSG00000025505.17	ENSMUST00000155657.2	905	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGACATGAATCAGAATAAAG	578	False	NA	NA	False	AAGAAA	-27	NA	140907651	140913199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140908180_140912822
transcript_87708.known	chr7	+	3191	21	FSM	ENSMUSG00000025504.15	ENSMUST00000026577.13	3191	21	0	0	0	0	multi-exon	TRUE	canonical	3	69	junction_6	10.2434125173206	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGATATCTGTTTCTTGG	NA	False	NA	7	True	AATAAA	-19	NA	140918792	140942933	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140918972_140921805_140921888_140921967_140922024_140922838_140922904_140934858_140935021_140935557_140935708_140935782_140935863_140936004_140936154_140936237_140936309_140936449_140936577_140936959_140937049_140937154_140937230_140937455_140937605_140937698_140937832_140938117_140938231_140940234_140940341_140940914_140941035_140941293_140941367_140941492_140941674_140941760_140941894_140942035
transcript_87711.known	chr7	+	1362	9	FSM	ENSMUSG00000025503.6	ENSMUST00000211654.2	1362	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	1588.07752782256	592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTGTTTCATTTCACCG	3840	False	NA	16	True	ATTAAA	-15	NA	140972111	140982879	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140972232_140975522_140975658_140975961_140976086_140978407_140978516_140980200_140980333_140981493_140981670_140981784_140981983_140982096_140982243_140982656
transcript_87720.known	chr7	+	1229	8	FSM	ENSMUSG00000025503.6	ENSMUST00000026576.5	1229	8	0	0	0	0	multi-exon	FALSE	canonical	3	3267	junction_3	222.11993450864	17027	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTTCATTTCACCGTC	3840	False	NA	18	True	ATTAAA	-17	NA	140972111	140982881	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_140972232_140975961_140976086_140978407_140978516_140980200_140980333_140981493_140981670_140981784_140981983_140982096_140982243_140982656
transcript_87721.known	chr7	-	1898	8	FSM	ENSMUSG00000051007.16	ENSMUST00000106008.3	1898	8	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_4	16.4564980032391	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTACACATTGGTTGTT	5437	False	NA	NA	False	NA	NA	NA	140994049	140987706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140988878_140989001_140989114_140989243_140989338_140989758_140989854_140990690_140990799_140990898_140991005_140991710_140991788_140993914
transcript_87727.known	chr7	-	2348	7	FSM	ENSMUSG00000051007.16	ENSMUST00000156353.8	2348	7	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_4	10.4721853816033	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTATGTGAGTTCTTGCGT	5483	False	NA	48	True	NA	NA	NA	140994003	140988047	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_140988878_140989001_140989114_140989243_140989338_140989758_140990799_140990898_140991005_140991710_140991788_140993914
transcript_87728.known	chr7	-	1733	2	FSM	ENSMUSG00000060240.13	ENSMUST00000124444.2	1733	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGGGCTGCTGTCCTCAC	8608	False	NA	NA	False	AATAAA	-16	NA	141009404	141006358	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_141007917_141009229
transcript_87729.known	chr7	-	2546	10	FSM	ENSMUSG00000019082.19	ENSMUST00000106007.10	2546	10	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_9	39.7436228287703	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGCTTTAAGAGTCTGT	3505	False	NA	-19	True	AATAAA	-18	NA	141014507	141009661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_141011172_141011262_141011339_141011414_141011570_141011651_141011827_141011933_141012053_141012575_141012667_141013493_141013550_141013812_141013939_141014068_141014243_141014443
transcript_87731.known	chr7	-	2568	10	FSM	ENSMUSG00000019082.19	ENSMUST00000124266.8	2568	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	41.7904827017402	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGCTTGCTTTAAGAGTC	461	False	NA	-22	True	AATAAA	-15	NA	141017551	141009664	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_141011172_141011262_141011339_141011414_141011570_141011651_141011827_141011933_141012072_141012575_141012667_141013493_141013550_141013812_141013939_141014068_141014243_141017481
transcript_87739.known	chr7	+	421	5	FSM	ENSMUSG00000025508.14	ENSMUST00000106004.8	421	5	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	6154.22628666675	4741	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCCTTTAAACATTTTGT	2459	False	NA	27	True	AATAAA	-20	NA	141027624	141031263	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_141027655_141027820_141027945_141028638_141028688_141030916_141031016_141031144
transcript_87743.known	chr7	+	964	5	FSM	ENSMUSG00000025508.14	ENSMUST00000084434.11	964	5	0	0	0	0	multi-exon	FALSE	canonical	3	11307	junction_1	1806.73116428538	90407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAGCACTGCTCTGCTGTA	2117	False	NA	NA	False	NA	NA	NA	141027282	141031498	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_141027621_141027820_141027945_141028638_141028688_141030916_141031016_141031144
transcript_87744.known	chr7	+	449	4	FSM	ENSMUSG00000025508.14	ENSMUST00000106003.2	449	4	0	0	0	0	multi-exon	FALSE	canonical	3	11523	junction_3	1651.02843370091	5204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCCTTTAAACATTTTGT	2597	False	NA	27	True	AATAAA	-20	NA	141027762	141031263	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_141027945_141028638_141028688_141030916_141031016_141031144
transcript_87745.known	chr7	+	2625	9	FSM	ENSMUSG00000025509.16	ENSMUST00000164016.8	2625	9	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	8.3132048573339	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTATCCTGTGCTGTGT	9945	False	NA	NA	False	NA	NA	NA	141035110	141040656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_141035387_141037185_141037419_141037504_141037571_141037917_141038128_141038342_141038404_141038504_141038673_141038757_141038891_141039079_141039203_141039301
transcript_87747.known	chr7	+	1799	8	FSM	ENSMUSG00000025509.16	ENSMUST00000064151.13	1799	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	24.6601388678083	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCCTCACTTCTGCATGT	9954	False	NA	19	True	AATAAA	-20	NA	141035119	141040007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_141035387_141037185_141037419_141037504_141037571_141037917_141038128_141038342_141038404_141038757_141038891_141039079_141039203_141039301
transcript_8775.known	chr10	+	2909	9	FSM	ENSMUSG00000035620.16	ENSMUST00000095385.5	2909	9	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_2	11.5325625946708	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATCTGTGTGTGTGTTTC	NA	False	NA	22	True	AATAAA	-23	NA	84753519	84852311	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_84753690_84761409_84761458_84783275_84783885_84793879_84793975_84805726_84805956_84806592_84806689_84815911_84816057_84827983_84828129_84850939
transcript_87756.known	chr7	+	1708	8	FSM	ENSMUSG00000025510.15	ENSMUST00000177840.9	1708	8	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_1	29.0537854500854	667	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTATAAGCACTCGAATC	NA	False	NA	-2	True	NA	NA	NA	141047334	141051376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_141047380_141048331_141048460_141049167_141049259_141049378_141049571_141049849_141049925_141050033_141050139_141050222_141050382_141050463
transcript_87758.known	chr7	+	1865	8	FSM	ENSMUSG00000025510.15	ENSMUST00000106000.10	1865	8	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	68.1968938187848	988	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCGAATCAGCTTGCTGA	NA	False	NA	8	True	NA	NA	NA	141047305	141051386	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_141047498_141048331_141048460_141049167_141049259_141049378_141049571_141049849_141049925_141050033_141050139_141050222_141050382_141050463
transcript_8776.known	chr10	+	3069	10	FSM	ENSMUSG00000035620.16	ENSMUST00000038523.15	3069	10	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_9	27.2890336586822	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATCTGTGTGTGTGTTTC	NA	False	NA	22	True	AATAAA	-23	NA	84753479	84852311	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_84753690_84761409_84761458_84783275_84783885_84793879_84793975_84805726_84805956_84806592_84806689_84815911_84816057_84827983_84828129_84837645_84837766_84850939
transcript_8777.known	chr10	-	3402	2	FSM	ENSMUSG00000050035.8	ENSMUST00000059383.8	3402	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACTTGAAGGAGAAAGCTT	NA	False	NA	NA	False	NA	NA	NA	84938359	84932150	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_84935353_84938159
transcript_87771.known	chr7	+	1619	7	FSM	ENSMUSG00000025510.15	ENSMUST00000058746.7	1619	7	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	95.130465969402	809	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTCGAATCAGCTTGCTG	710	False	NA	7	True	NA	NA	NA	141048734	141051385	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_141048810_141049167_141049259_141049378_141049571_141049849_141049925_141050033_141050139_141050222_141050382_141050463
transcript_8778.known	chr10	+	3616	3	FSM	ENSMUSG00000060935.7	ENSMUST00000095383.6	3616	3	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_1	7	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGGAATGTTTCATAAAG	NA	False	NA	17	True	AATAAA	-17	NA	84938490	84953449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_84938862_84946662_84946730_84950271
transcript_87781.known	chr7	-	1650	2	FSM	ENSMUSG00000038489.9	ENSMUST00000043870.9	1650	2	0	0	0	0	multi-exon	FALSE	canonical	3	1072	junction_1	0	4995	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	8000	False	NA	NA	False	NA	NA	NA	141055045	141051772	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_141053318_141054940
transcript_87785.known	chr7	-	4222	13	FSM	ENSMUSG00000025512.16	ENSMUST00000166082.8	4222	13	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_12	22.800310670398	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGTCTGGTGTCTGCTGCC	NA	False	NA	NA	False	NA	NA	NA	141119770	141073049	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_141076060_141076283_141076327_141076513_141076595_141093646_141093803_141095314_141095417_141102521_141102615_141106344_141106407_141107511_141107619_141108375_141108421_141109481_141109615_141110062_141110213_141112731_141112887_141119685
transcript_87795.known	chr7	-	3910	11	FSM	ENSMUSG00000025512.16	ENSMUST00000118694.8	3910	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	66.3870469293521	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTCTGGTGTCTGCTGC	NA	False	NA	NA	False	NA	NA	NA	141119717	141073050	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_141076060_141076283_141076327_141076513_141076595_141102521_141102615_141106344_141106407_141107511_141107619_141108375_141108421_141109481_141109615_141110062_141110213_141112731_141112887_141119685
transcript_87799.known	chr7	+	1466	8	FSM	ENSMUSG00000025511.16	ENSMUST00000026585.14	1466	8	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	68.6787850082111	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGAAGTTCTTTCATTT	3491	False	NA	45	True	NA	NA	NA	141055152	141073340	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_141055411_141062399_141062480_141069464_141069657_141070674_141070750_141071484_141071587_141071686_141071819_141071892_141071977_141072797
transcript_87805.known	chr7	+	1281	8	FSM	ENSMUSG00000025511.16	ENSMUST00000117634.2	1281	8	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	83.3289522657899	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAACTGAGGAAGTTCTT	4651	False	NA	39	True	NA	NA	NA	141056312	141073334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_141056392_141062399_141062480_141069464_141069657_141070674_141070750_141071484_141071587_141071686_141071819_141071892_141071977_141072797
transcript_8781.known	chr10	-	337	3	FSM	ENSMUSG00000049038.4	ENSMUST00000214193.2	337	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	23	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTCAGTGCATGTTCAG	NA	False	NA	NA	False	GATAAA	-21	NA	84963859	84956473	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_84956679_84962231_84962330_84963825
transcript_87812.known	chr7	-	1127	2	FSM	ENSMUSG00000025512.16	ENSMUST00000133359.2	1127	2	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	141119745	141111819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_141112887_141119685
transcript_87813.known	chr7	-	652	5	FSM	ENSMUSG00000025512.16	ENSMUST00000155305.2	652	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	89.4493571804739	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCAAGTCTTCCATTGGTC	NA	False	NA	NA	False	NA	NA	NA	141106380	141091687	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_141091953_141093646_141093803_141095314_141095417_141102521_141102615_141106344
transcript_87814.known	chr7	+	4646	22	FSM	ENSMUSG00000002957.12	ENSMUST00000003038.12	4646	22	0	0	0	0	multi-exon	FALSE	canonical	3	504	junction_7	69.5768877620837	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTGTGTGGTTTTTGTGG	9596	False	NA	28	True	AATAAA	-22	NA	141142085	141212924	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_141142340_141168198_141168268_141177385_141177529_141178614_141178809_141182145_141182276_141184821_141184924_141189719_141189829_141191248_141191397_141192541_141192711_141194111_141194250_141199363_141199547_141200384_141200483_141200704_141200937_141201027_141201202_141203530_141203695_141206020_141206104_141207806_141207897_141209102_141209227_141209971_141210089_141210197_141210268_141210349_141210485_141211204
transcript_87817.known	chr7	+	1549	5	FSM	ENSMUSG00000002957.12	ENSMUST00000201320.2	1549	5	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_3	22.2190796389049	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TGAAAAAAAAAAAAAAAACA	9631	False	NA	NA	False	AATAGA	-36	NA	141142120	141183069	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_141142340_141168198_141168268_141177385_141177529_141178614_141178809_141182145
transcript_87819.known	chr7	-	1892	7	FSM	ENSMUSG00000025139.15	ENSMUST00000130439.3	1892	7	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_6	128.120602905578	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGCCTGTACCTGACCAGT	2876	False	NA	NA	False	ATTAAA	-17	NA	141456045	141437125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_141438319_141443243_141443335_141444438_141444592_141445720_141445904_141446476_141446627_141452431_141452521_141456012
transcript_8782.known	chr10	-	1567	3	FSM	ENSMUSG00000049038.4	ENSMUST00000050813.4	1567	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	4.5	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATTATTCCAAAACATCAT	NA	False	NA	2	True	AATAAA	-23	NA	84963891	84955296	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_84956679_84962231_84962351_84963825
transcript_87821.known	chr7	-	3788	6	FSM	ENSMUSG00000025139.15	ENSMUST00000001950.12	3788	6	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_2	12.1556571192182	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTTTGTTCTTGAGTAT	2697	False	NA	-5	True	AATAAA	-21	NA	141456224	141435319	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_141438319_141443243_141443335_141444438_141444592_141445720_141445904_141446476_141446627_141456012
transcript_87826.known	chr7	-	1100	6	FSM	ENSMUSG00000025139.15	ENSMUST00000055819.13	1100	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	118.569810660218	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCTGAGTGCCTGGTGCT	2769	False	NA	NA	False	NA	NA	NA	141456152	141428549	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_141428933_141443243_141443335_141444438_141444592_141445720_141445904_141446476_141446627_141456012
transcript_87829.known	chr7	-	977	5	FSM	ENSMUSG00000025147.8	ENSMUST00000209732.2	977	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	68.6676779860802	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTGTCTGTGTGTGCGC	NA	False	NA	NA	False	AAAAAG	-5	NA	141579812	141562964	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_141563316_141563989_141564115_141569815_141569910_141570081_141570243_141579566
transcript_87830.known	chr7	-	1490	5	FSM	ENSMUSG00000025147.8	ENSMUST00000084418.4	1490	5	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_3	10.8857705285386	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTCCTCTCAGCCTG	NA	False	NA	-34	True	AATAAA	-18	NA	141614802	141562286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_141563316_141563989_141564115_141569815_141569910_141570081_141570243_141614721
transcript_87831.known	chr7	-	958	5	FSM	ENSMUSG00000025147.8	ENSMUST00000210684.2	958	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	69.7006994226026	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTGATGTTTTGATTTTT	NA	False	NA	NA	False	NA	NA	NA	141614802	141562769	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_141563316_141563989_141564115_141569815_141569910_141570130_141570243_141614721
transcript_87838.known	chr7	-	824	3	FSM	ENSMUSG00000045777.15	ENSMUST00000105988.2	824	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCACTGAGATTCAGGATG	NA	False	NA	NA	False	NA	NA	NA	141927490	141909658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_141909852_141924594_141925048_141927312
transcript_87839.known	chr7	-	2127	9	FSM	ENSMUSG00000007891.17	ENSMUST00000151120.9	2127	9	0	0	0	0	multi-exon	FALSE	canonical	3	1941	junction_4	107.727593377927	2747	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGTGTGCTCTGTACTGT	8684	False	NA	-2	True	AATAAA	-23	NA	141941775	141929647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_141930476_141930569_141930669_141930762_141930908_141931069_141931193_141934502_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
transcript_8784.known	chr10	+	952	1	FSM	ENSMUSG00000050490.8	ENSMUST00000079684.7	952	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	645	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAAAAAATTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	85149351	85150303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_85149400_85150300
transcript_87840.known	chr7	-	1158	3	FSM	ENSMUSG00000045777.15	ENSMUST00000084412.6	1158	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCAGCCTCTGTCCATGT	NA	False	NA	NA	False	ATTAAA	-17	NA	141925996	141909244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_141909852_141924594_141925048_141925898
transcript_87841.known	chr7	+	345	3	FSM	ENSMUSG00000031097.16	ENSMUST00000211192.2	345	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCTAGCATTGGGGAAGCA	16	False	NA	NA	False	AAGAAA	-42	NA	141997513	141998067	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_141997566_141997642_141997820_141997951
transcript_87842.known	chr7	+	1395	11	FSM	ENSMUSG00000018819.11	ENSMUST00000105967.8	1395	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	3.19374388453426	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGGATCTCCTGTGCTCA	NA	False	NA	NA	False	AATAAA	-23	NA	142014600	142048340	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_142014704_142038215_142038363_142040083_142040243_142042155_142042253_142042602_142042678_142042865_142042910_142043061_142043144_142043636_142043772_142044081_142044160_142044295_142044403_142047972
transcript_87846.known	chr7	+	692	5	FSM	ENSMUSG00000037772.14	ENSMUST00000038675.7	692	5	0	0	0	0	multi-exon	FALSE	canonical	3	973	junction_1	229.96847610053	1357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGACACTTTGCCTT	NA	False	NA	2	True	AATAAA	-20	NA	142086748	142094484	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_142086932_142088741_142088865_142089806_142089890_142091003_142091078_142094255
transcript_8785.known	chr10	+	5788	17	FSM	ENSMUSG00000020042.16	ENSMUST00000105307.8	5788	17	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_1	8.15379512865022	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGCATCCTCTTTATGGT	NA	False	NA	13	True	ATTAAA	-18	NA	85222677	85496156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_85224343_85382305_85382456_85397368_85397574_85434588_85434742_85460766_85460933_85463060_85463151_85465075_85465178_85466951_85467046_85467156_85467293_85467952_85468174_85469547_85469727_85476366_85476473_85481351_85481455_85483575_85483658_85487470_85487540_85490341_85490456_85494003
transcript_87850.known	chr7	+	590	5	FSM	ENSMUSG00000037772.14	ENSMUST00000210803.2	590	5	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	637.011136087902	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGACACTTTGCCTT	NA	False	NA	2	True	AATAAA	-20	NA	142086897	142094484	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_142086979_142088741_142088865_142089806_142089890_142091003_142091078_142094255
transcript_87855.known	chr7	-	1605	3	FSM	ENSMUSG00000009248.7	ENSMUST00000009392.6	1605	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	4	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTTTGCAGTGCCTTGTA	NA	False	NA	-9	True	TATAAA	-15	NA	142523001	142520565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_142521077_142521636_142522437_142522707
transcript_87857.known	chr7	+	1582	9	FSM	ENSMUSG00000000244.18	ENSMUST00000009396.13	1582	9	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	3.07205143186113	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGGTAGAATCCTTTCTT	3169	False	NA	NA	False	NA	NA	NA	142558782	142573223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_142558913_142559640_142559756_142560644_142560743_142564770_142564846_142568695_142568798_142569317_142569405_142570937_142571022_142571315_142571411_142572427
transcript_8786.known	chr10	+	3945	15	FSM	ENSMUSG00000020042.16	ENSMUST00000105306.3	3945	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	12.689582743498	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGCATCCTCTTTATGGT	NA	False	NA	13	True	ATTAAA	-18	NA	85434264	85496156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_85434442_85434588_85434742_85460766_85460933_85463060_85463151_85465075_85465178_85466951_85467046_85467156_85467293_85467952_85468174_85469547_85469727_85476366_85476473_85481351_85481455_85483575_85483658_85487470_85487540_85490341_85490456_85494003
transcript_87861.known	chr7	+	1876	8	FSM	ENSMUSG00000000244.18	ENSMUST00000075172.12	1876	8	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_6	2.66496544373966	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCCAGACCCCACTTCCT	3761	False	NA	NA	False	NA	NA	NA	142559374	142573381	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_142559756_142560644_142560743_142564770_142564846_142568695_142568798_142569317_142569405_142570937_142571022_142571315_142571411_142572427
transcript_87864.known	chr7	+	1587	7	FSM	ENSMUSG00000000244.18	ENSMUST00000082008.12	1587	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	2.98142396999972	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGGTAGAATCCTTTCTT	3808	False	NA	NA	False	NA	NA	NA	142559421	142573223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_142559756_142560644_142560743_142564770_142564846_142568695_142568798_142569317_142569405_142571315_142571411_142572427
transcript_87865.nnic	chr7	+	1495	7	NNC	ENSMUSG00000000244.18	novel	478	2	NA	NA	1777	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4.42216638714053	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGGTAGAATCCTTTCTT	5828	False	NA	NA	False	NA	NA	NA	142561441	142573223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr7_+_142561698_142564770_142564846_142568695_142568798_142569317_142569405_142570937_142571022_142571315_142571411_142572427
transcript_87867.known	chr7	+	1478	6	FSM	ENSMUSG00000000244.18	ENSMUST00000105924.8	1478	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	4.70744091837593	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGGTAGAATCCTTTCTT	3822	False	NA	NA	False	NA	NA	NA	142559435	142573223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_142559756_142560644_142560743_142564770_142564846_142568695_142568798_142569317_142569405_142572427
transcript_87870.known	chr7	+	812	3	FSM	ENSMUSG00000000244.18	ENSMUST00000141186.2	812	3	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	2.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAGAAAGCTCTTGTTG	3183	False	NA	NA	False	NA	NA	NA	142558796	142561225	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_142558913_142559640_142559756_142560644
transcript_87876.known	chr7	+	1533	8	FSM	ENSMUSG00000037706.18	ENSMUST00000037941.10	1533	8	0	0	0	0	multi-exon	FALSE	canonical	3	5787	junction_4	310.433666383802	3411	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCCAGACCTCTTCCTGT	NA	False	NA	42	True	AATAAA	-30	NA	142606475	142621671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_142606804_142616229_142616345_142618945_142619044_142619679_142619755_142619984_142620090_142620397_142620500_142620883_142620971_142621048
transcript_87887.known	chr7	-	1682	5	FSM	ENSMUSG00000059277.13	ENSMUST00000131129.2	1682	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4.02336923485777	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAATTAAAAGGAAAGA	NA	False	NA	NA	False	NA	NA	NA	142607414	142587020	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_142587664_142591017_142591119_142592915_142593051_142598231_142598394_142606773
transcript_87888.known	chr7	-	2219	4	FSM	ENSMUSG00000059277.13	ENSMUST00000155952.8	2219	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	1.69967317119759	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACATAAAATAAATAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	142607423	142586357	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_142587664_142591017_142591119_142598231_142598394_142606773
transcript_87894.known	chr7	+	1735	1	FSM	ENSMUSG00000045752.14	ENSMUST00000207776.2	1735	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	396	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTGTGGCTTTTT	NA	False	NA	16	True	AATAAA	-15	NA	142623089	142624824	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_142623100_142624800
transcript_87895.known	chr7	+	1519	3	FSM	ENSMUSG00000045752.14	ENSMUST00000060433.10	1519	3	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_2	1	780	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTGGCTTTTTCCGGGC	NA	False	NA	22	True	AATAAA	-21	NA	142622985	142624830	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_142623251_142623491_142623588_142623672
transcript_87896.known	chr7	+	895	4	FSM	ENSMUSG00000045752.14	ENSMUST00000105920.8	895	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	69.3012746395524	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTGTGGCTTTTT	NA	False	NA	16	True	AATAAA	-15	NA	142623104	142624824	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_142623251_142623491_142623588_142623672_142624030_142624528
transcript_87897.known	chr7	+	1525	11	FSM	ENSMUSG00000000154.17	ENSMUST00000052348.12	1525	11	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	2.44131112314674	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTTGGGCTTTGCCTAG	856	False	NA	NA	False	AATAAA	-25	NA	143027472	143053071	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_143027575_143029806_143030043_143033021_143033120_143033456_143033618_143034126_143034260_143044548_143044662_143045482_143045591_143046578_143046680_143050687_143050790_143051046_143051168_143052821
transcript_87899.known	chr7	-	757	2	FSM	ENSMUSG00000010760.6	ENSMUST00000010904.5	757	2	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	0	342	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGGTCTGTGTAGTTC	NA	False	NA	2	True	AATAAA	-27	NA	143056278	143055281	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_143055554_143055793
transcript_87904.known	chr7	-	2285	16	FSM	ENSMUSG00000059119.10	ENSMUST00000072727.7	2285	16	0	0	0	0	multi-exon	FALSE	canonical	3	502	junction_2	192.287354411741	2235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGGTTTTTTTGTTGTTT	NA	False	NA	-1	True	ATTAAA	-20	NA	143102829	143067315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_143068375_143072586_143072623_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
transcript_87914.known	chr7	-	2281	15	FSM	ENSMUSG00000059119.10	ENSMUST00000209098.2	2281	15	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_14	301.333092528951	1734	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAACTGAGATTGGTTTTT	NA	False	NA	-10	True	ATTAAA	-11	NA	143102565	143067324	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_143068375_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102473
transcript_87916.known	chr7	-	2259	15	FSM	ENSMUSG00000059119.10	ENSMUST00000208190.2	2259	15	0	0	0	0	multi-exon	FALSE	canonical	3	471	junction_1	167.71624785905	2254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGATTGGTTTTTTTGTT	NA	False	NA	-5	True	ATTAAA	-16	NA	143102843	143067319	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_143068375_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
transcript_87942.known	chr7	-	3222	23	FSM	ENSMUSG00000010755.18	ENSMUST00000010899.14	3222	23	0	0	0	0	multi-exon	TRUE	canonical	3	290	junction_21	336.211639490553	453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATGTGTCTAGCCTTCGC	NA	False	NA	NA	False	NA	NA	NA	143153827	143110966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143146148_143146398_143153718
transcript_87948.known	chr7	-	2462	22	FSM	ENSMUSG00000010755.18	ENSMUST00000105909.4	2462	22	0	0	0	0	multi-exon	FALSE	canonical	3	1234	junction_21	93.4109735380392	888	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTCTGGTCTGCCCTCTC	NA	False	NA	-3	True	AATAAA	-15	NA	143153793	143111443	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
transcript_87967.known	chr7	-	2213	1	FSM	ENSMUSG00000010755.18	ENSMUST00000207168.2	2213	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAAAAACGAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	143153817	143151604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_143151600_143153800
transcript_87968.known	chr7	-	2298	7	FSM	ENSMUSG00000010751.16	ENSMUST00000146692.8	2298	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	62.0232931154811	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTGCTGTGCCTTGTGCT	NA	False	NA	NA	False	AGTAAA	-24	NA	143203398	143190461	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_143192174_143192981_143193027_143193638_143193713_143194488_143194601_143197012_143197142_143198517_143198609_143203263
transcript_87971.known	chr7	-	4170	6	FSM	ENSMUSG00000010751.16	ENSMUST00000075588.13	4170	6	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_4	22.3338308402298	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAATCTGGCTTGAATTGG	NA	False	NA	NA	False	NA	NA	NA	143203398	143188544	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_143192174_143193638_143193713_143194488_143194601_143197012_143197142_143198517_143198609_143203263
transcript_87975.known	chr7	-	1476	6	FSM	ENSMUSG00000037613.17	ENSMUST00000152703.2	1476	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	25.9799923017695	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTTTGTCCTCACTTTGT	3107	False	NA	NA	False	NA	NA	NA	143239609	143221350	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_143222330_143223718_143223793_143224568_143224681_143233681_143233811_143235196_143235288_143239518
transcript_87977.known	chr7	-	700	1	FSM	ENSMUSG00000037613.17	ENSMUST00000208613.2	700	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAAAACCCAAAAAA	3107	False	NA	NA	False	NA	NA	NA	143239609	143238909	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_143238900_143239600
transcript_87978.known	chr7	+	856	1	FSM	ENSMUSG00000109251.2	ENSMUST00000208797.2	856	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAATGG	NA	False	NA	NA	False	NA	NA	NA	143181760	143182616	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_143181800_143182600
transcript_87980.known	chr7	-	2641	21	FSM	ENSMUSG00000031090.15	ENSMUST00000033415.15	2641	21	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_5	7.20416546173115	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCTTATTGATGTGTACG	NA	False	NA	NA	False	AATAAA	-25	NA	143376578	143349320	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_143349794_143351561_143351739_143352191_143352321_143352777_143352848_143353527_143353660_143356932_143357040_143357750_143357887_143359651_143359821_143360616_143360720_143361123_143361173_143361721_143361847_143362528_143362604_143364905_143365038_143366226_143366345_143366499_143366589_143367126_143367179_143369322_143369413_143369910_143369965_143372829_143372947_143374908_143374970_143376395
transcript_87986.known	chr7	-	761	5	FSM	ENSMUSG00000031090.15	ENSMUST00000142749.2	761	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_2	7.56637297521078	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATTGTGTCTCAAATTG	NA	False	NA	NA	False	NA	NA	NA	143376586	143369074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_143369413_143369910_143369965_143372829_143372947_143374908_143374970_143376395
transcript_87990.known	chr7	+	2556	9	FSM	ENSMUSG00000058454.16	ENSMUST00000124340.8	2556	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	138.760078462791	480	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATGTTGTACTGTCTCCT	NA	False	NA	32	True	NA	NA	NA	143383362	143402147	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_143383477_143383875_143384003_143390374_143390467_143391498_143391722_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400789
transcript_87992.known	chr7	-	3286	18	FSM	ENSMUSG00000031078.16	ENSMUST00000103079.4	3286	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	258.149054338875	702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTGTGTGATCTTCTGC	NA	False	NA	-20	True	AATAAA	-14	NA	144024746	143989471	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_143990839_143991685_143991758_143992502_143992669_143993745_143993836_143995435_143995585_143999539_143999610_144003296_144003353_144004714_144004826_144005763_144005875_144006284_144006396_144008412_144008524_144010177_144010233_144011405_144011517_144014915_144015046_144017039_144017114_144017648_144017736_144019690_144019785_144024425
transcript_87998.known	chr7	-	2913	17	FSM	ENSMUSG00000031078.16	ENSMUST00000033407.13	2913	17	0	0	0	0	multi-exon	TRUE	canonical	3	340	junction_7	190.956545694956	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGATCTTCTGCAG	NA	False	NA	-18	True	AATAAA	-16	NA	144024482	143989469	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_143990839_143991685_143991758_143992502_143992669_143993745_143993836_143995435_143995585_143999539_143999610_144003296_144003353_144005763_144005875_144006284_144006396_144008412_144008524_144010177_144010233_144011405_144011517_144014915_144015046_144017039_144017114_144017648_144017736_144019690_144019785_144024425
transcript_8800.known	chr10	+	2572	15	FSM	ENSMUSG00000001785.14	ENSMUST00000001836.11	2572	15	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_1	18.5957258639765	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCACCTCACTTTGACT	NA	False	NA	8	True	AATAAA	-19	NA	85707694	85724960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_85707879_85710141_85710201_85710312_85710498_85712161_85712248_85712349_85712447_85714342_85714454_85715125_85715257_85715693_85715756_85717866_85717964_85718734_85718797_85720326_85720439_85721473_85721565_85721660_85721783_85723086_85723193_85723893
transcript_88006.known	chr7	+	2299	3	FSM	ENSMUSG00000031074.15	ENSMUST00000105898.2	2299	3	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	3.5	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAACCATATGGTTGGTG	NA	False	NA	3	True	NA	NA	NA	144392331	144398173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_144392665_144394407_144394512_144396311
transcript_88008.known	chr7	+	3030	3	FSM	ENSMUSG00000050917.6	ENSMUST00000060336.5	3030	3	0	0	0	0	multi-exon	FALSE	canonical	3	677	junction_2	22.5	364	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCACCTGTGTCTGCTTTG	8002	False	NA	28	True	ATTAAA	-18	NA	144415122	144418980	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_144415570_144415968_144416073_144416501
transcript_88009.known	chr7	+	1810	3	FSM	ENSMUSG00000031073.7	ENSMUST00000033389.7	1810	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	1.5	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATTTGTTCTATTCCAAG	NA	False	NA	NA	False	ATTAAA	-23	NA	144450267	144454690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_144450669_144450852_144450957_144453385
transcript_88010.known	chr7	+	168	1	FSM	ENSMUSG00000115783.2	ENSMUST00000227063.2	168	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCCCCCAAGGGCATTTT	NA	False	NA	NA	False	NA	NA	NA	144468206	144468374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_144468200_144468400
transcript_88011.known	chr7	+	2015	5	FSM	ENSMUSG00000031072.15	ENSMUST00000033388.12	2015	5	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_3	3.69966214673719	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTCTGTCTGGGATCATT	NA	False	NA	8	True	AATAAA	-18	NA	144468871	144474871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_144469067_144470164_144470271_144471346_144471418_144472960_144473079_144473346
transcript_88013.known	chr7	+	1016	5	FSM	ENSMUSG00000031072.15	ENSMUST00000105895.2	1016	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	38.4146781842566	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCCACCCCGAAGACATCA	NA	False	NA	NA	False	NA	NA	NA	144468916	144483232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_144469067_144470164_144470271_144471346_144471418_144472960_144473079_144482661
transcript_88014.known	chr7	+	2231	4	FSM	ENSMUSG00000031072.15	ENSMUST00000128057.8	2231	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	44.8131925020102	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTCTGACATTGTAAAACAA	NA	False	NA	NA	False	ATTAAA	-14	NA	144468836	144484485	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_144469067_144470164_144470271_144471346_144471418_144482661
transcript_88015.known	chr7	+	357	3	FSM	ENSMUSG00000031072.15	ENSMUST00000093964.5	357	3	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_2	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTCCCTCTCAGCCTCT	NA	False	NA	NA	False	AAAAAG	-26	NA	144468907	144471438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_+_144469067_144470164_144470271_144471346
transcript_88016.known	chr7	-	3740	5	FSM	ENSMUSG00000070348.6	ENSMUST00000093962.5	3740	5	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_3	35.5316760088797	628	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCACTGTTGTCTGTGTTT	NA	False	NA	-4	True	AATAAA	-16	NA	144493606	144483667	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_144486509_144487752_144487902_144491030_144491191_144491623_144491840_144493232
transcript_88017.known	chr7	-	2993	25	FSM	ENSMUSG00000048677.10	ENSMUST00000058022.6	2993	25	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	4.91860837364933	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTGGCCCTGTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	144837748	144807659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr7_-_144808436_144809187_144809271_144809616_144809699_144810250_144810334_144810466_144810549_144810908_144810983_144811532_144811605_144812251_144812352_144813825_144813876_144814608_144814738_144815669_144815730_144815884_144816005_144820294_144820382_144820514_144820597_144821039_144821141_144821804_144821870_144822596_144822663_144823470_144823571_144826016_144826093_144827598_144827706_144830845_144830963_144832473_144832652_144833013_144833091_144833965_144834031_144837587
transcript_88023.known	chr8	-	9355	21	FSM	ENSMUSG00000005534.11	ENSMUST00000091291.5	9355	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	18.3463211571149	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTGTGTAGTATACAGG	NA	False	NA	1	True	AATAAA	-15	NA	3329617	3200921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_3206024_3208695_3208831_3209452_3209583_3211338_3211499_3211680_3211792_3213236_3213482_3215517_3215586_3217501_3217605_3219708_3219869_3223479_3223620_3224613_3224889_3234950_3235153_3239124_3239293_3242545_3242803_3244794_3244922_3248060_3248276_3252889_3253035_3254629_3254779_3261378_3261701_3308382_3308935_3329028
transcript_88024.nic	chr8	+	1422	8	ISM	ENSMUSG00000004568.14	ENSMUST00000131773.8	3843	12	-28	10748	-28	10253	5prime_fragment	FALSE	canonical	3	218	junction_1	23.932728849926	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAATGTTTTCAAGTTTGA	NA	False	NA	NA	False	AATAAA	-17	NA	3442977	3489892	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_3443103_3477348_3477491_3479231_3479345_3479498_3479640_3482618_3482870_3484871_3484998_3486981_3487100_3489486
transcript_88030.known	chr8	+	5271	20	FSM	ENSMUSG00000004568.14	ENSMUST00000004684.13	5271	20	0	0	0	0	multi-exon	TRUE	canonical	3	218	junction_1	25.5526180280738	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCAGGCTGAAACAGACCT	NA	False	NA	24	True	AATAAA	-14	NA	3443037	3506601	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_3443103_3477348_3477491_3479231_3479345_3479498_3479640_3482618_3482870_3484871_3484998_3486981_3487100_3489486_3489739_3491219_3491297_3494888_3495068_3497001_3497091_3498382_3498569_3500295_3500437_3500780_3500915_3501490_3501539_3501630_3501679_3501814_3502286_3503037_3503372_3504158_3504285_3504371
transcript_88037.known	chr8	-	666	5	FSM	ENSMUSG00000069633.13	ENSMUST00000111081.10	666	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	10.8943792847505	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGTGTGTGTGTGTGTG	NA	False	NA	NA	False	AATAAA	-14	NA	3517645	3507107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_3507310_3509286_3509435_3510271_3510335_3513921_3514101_3517571
transcript_88040.known	chr8	-	2870	5	FSM	ENSMUSG00000069633.13	ENSMUST00000004686.13	2870	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	4.14578098794425	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-17	NA	3517680	3507104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_3509435_3510271_3510335_3513921_3514101_3515782_3515972_3517571
transcript_88041.nic	chr8	-	957	4	ISM	ENSMUSG00000069633.13	ENSMUST00000111081.10	666	5	-23	1709	2	-1709	5prime_fragment	FALSE	canonical	0	0	junction_3	10.9645894689324	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGTGTGTGCATGAGGTG	NA	False	NA	-2	True	ATTAAA	-16	NA	3517668	3508816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_3509435_3510271_3510335_3513921_3514101_3517571
transcript_88042.known	chr8	+	1999	2	FSM	ENSMUSG00000047264.9	ENSMUST00000061508.8	1999	2	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTTGTTACTTGCC	6316	False	NA	16	True	AGTAAA	-17	NA	3543137	3547208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_3543310_3545381
transcript_88043.known	chr8	+	2065	14	FSM	ENSMUSG00000004567.17	ENSMUST00000004683.13	2065	14	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_8	29.619280463035	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGGTGGTCTAATTTGTAA	NA	False	NA	12	True	AATAAA	-13	NA	3550456	3565232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_3550628_3555737_3555944_3557148_3557317_3557400_3557567_3558318_3558428_3558683_3558781_3559135_3559236_3560319_3560427_3560539_3560690_3560813_3560916_3561687_3561811_3562649_3562866_3564782_3564914_3565013
transcript_88045.nic	chr8	+	1993	14	NIC	ENSMUSG00000004565.16	novel	4438	34	NA	NA	-2	61	combination_of_known_junctions	FALSE	canonical	2	3	junction_13	63.2078378781522	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGAGTGTGTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	3566871	3575268	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_3567165_3567324_3567408_3567557_3567656_3571274_3571416_3571507_3571668_3572100_3572182_3572276_3572406_3572587_3572669_3572758_3572925_3573257_3573342_3573757_3573868_3573998_3574167_3574251_3574330_3574947
transcript_88046.nnic	chr8	+	1571	11	NNC	ENSMUSG00000004565.16	novel	672	6	NA	NA	-268	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	97.8756864599171	91	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGGTGCTGTCTTTGGG	NA	False	NA	16	True	AATAAA	-20	NA	3586286	3594266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_3586339_3586542_3586662_3586862_3587020_3587248_3587366_3587450_3587521_3587968_3588086_3591290_3591593_3592297_3592415_3592844_3592942_3593066_3593177_3593953
transcript_88048.nic	chr8	+	1022	5	ISM	ENSMUSG00000004565.16	ENSMUST00000207941.2	4263	31	24334	-6	133	0	3prime_fragment	FALSE	canonical	3	270	junction_2	13.1624465810882	89	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGGTGCTGTCTTTGGG	3414	False	NA	16	True	AATAAA	-20	NA	3591207	3594266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_3591593_3592297_3592415_3592844_3592942_3593066_3593177_3593953
transcript_88050.nic	chr8	+	791	5	ISM	ENSMUSG00000065952.14	ENSMUST00000136592.2	1621	6	-61	4251	-53	1928	5prime_fragment	FALSE	canonical	3	9	junction_4	8.46684711093805	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTGCGATATTCTCACAT	NA	False	NA	NA	False	ATTAAA	-1	NA	3617936	3630525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_3618097_3623120_3623222_3627840_3628046_3629722_3629922_3630399
transcript_88055.nnic	chr8	+	687	4	NNC	ENSMUSG00000065952.14	novel	960	3	NA	NA	-53	-11	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	12.657891697365	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCATTTTATTTATTTATC	NA	False	NA	13	True	ATTAAA	-41	NA	3617936	3628586	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_3618097_3623120_3623222_3627840_3627961_3628280
transcript_88056.nnic	chr8	+	772	4	NNC	ENSMUSG00000065952.14	novel	1621	6	NA	NA	-53	-11	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_3	10.3387082795139	77	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCATTTTATTTATTTATC	NA	False	NA	13	True	ATTAAA	-41	NA	3617936	3628586	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_3618097_3623120_3623222_3627840_3628046_3628280
transcript_88059.nnic	chr8	+	864	4	NNC	ENSMUSG00000065952.14	novel	1621	6	NA	NA	-51	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	10.3387082795139	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCATTTTATTTATTTATC	NA	False	NA	13	True	ATTAAA	-41	NA	3617938	3628586	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_3618191_3623120_3623222_3627840_3628046_3628280
transcript_88061.nnic	chr8	+	666	4	NIC	ENSMUSG00000065952.14	novel	1621	6	NA	NA	-29	1928	combination_of_known_splicesites	FALSE	canonical	3	8	junction_1	1.24721912892465	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTGCGATATTCTCACAT	NA	False	NA	NA	False	ATTAAA	-1	NA	3617960	3630525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_3618097_3627840_3628046_3629722_3629922_3630399
transcript_88064.known	chr8	+	960	3	FSM	ENSMUSG00000065952.14	ENSMUST00000153341.8	960	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	2.5	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTATCTGTTTATTTAT	NA	False	NA	24	True	ATTAAA	-44	NA	3617994	3628597	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_3618097_3623120_3623222_3627840
transcript_88065.nnic	chr8	+	805	3	NNC	ENSMUSG00000065952.14	novel	960	3	NA	NA	-53	186	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	14.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTCTGCCTCTGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	3617936	3623836	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_3618097_3623120_3623224_3623294
transcript_88068.nnic	chr8	+	1110	3	NNC	ENSMUSG00000065952.14	novel	960	3	NA	NA	-51	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	12	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTATCTGTTTATTTAT	NA	False	NA	24	True	ATTAAA	-44	NA	3617938	3628597	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_3618191_3623120_3623222_3627840
transcript_88069.nnic	chr8	+	897	3	NNC	ENSMUSG00000065952.14	novel	960	3	NA	NA	-51	186	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTCTGCCTCTGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	3617938	3623836	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_3618191_3623120_3623224_3623294
transcript_8807.known	chr10	+	1247	11	FSM	ENSMUSG00000001785.14	ENSMUST00000219902.2	1247	11	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_1	17.6737092880923	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAAAAAAAAAAACTTAG	NA	False	NA	NA	False	NA	NA	NA	85707747	85720552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_85707879_85710141_85710201_85710312_85710498_85712161_85712248_85712349_85712447_85714342_85714454_85715125_85715257_85715693_85715756_85717866_85717964_85718734_85718797_85720326
transcript_88070.nnic	chr8	+	647	3	NNC	ENSMUSG00000065952.14	novel	1621	6	NA	NA	-29	-11	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_2	1.5	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCATTTTATTTATTTATC	NA	False	NA	13	True	ATTAAA	-41	NA	3617960	3628586	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_3618097_3627840_3628046_3628280
transcript_88072.known	chr8	+	637	2	FSM	ENSMUSG00000065952.14	ENSMUST00000138454.2	637	2	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	0	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATGTGTGTGTATGTGC	NA	False	NA	NA	False	NA	NA	NA	3617989	3623650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_3618097_3623120
transcript_88076.known	chr8	-	432	1	FSM	ENSMUSG00000066902.8	ENSMUST00000146939.2	432	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2259	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTGACAATGGAAACACA	NA	False	NA	NA	False	AAGAAA	-19	NA	3634230	3633798	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_3633800_3634200
transcript_88079.known	chr8	-	2677	19	FSM	ENSMUSG00000019470.13	ENSMUST00000019614.13	2677	19	0	0	0	0	multi-exon	FALSE	canonical	3	374	junction_12	44.2084358744927	539	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCGGTCTTGACCTCCTTC	1011	False	NA	-4	True	AATACA	-16	NA	3671316	3660086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_3660220_3660310_3660421_3660544_3660675_3660846_3661019_3661113_3661237_3661393_3661585_3661671_3661835_3662962_3663077_3663158_3663291_3663367_3663500_3663589_3663710_3663798_3663951_3664244_3664390_3665993_3666159_3666249_3666385_3668054_3668253_3668542_3668667_3668944_3669094_3671227
transcript_88088.known	chr8	+	363	4	FSM	ENSMUSG00000087687.4	ENSMUST00000207389.2	363	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	322.072800603977	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCTAGTGCCAAGTGTT	5638	False	NA	10	True	NA	NA	NA	3671601	3673372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_3671696_3672341_3672429_3672592_3672626_3673223
transcript_88089.known	chr8	-	470	4	FSM	ENSMUSG00000004630.19	ENSMUST00000133459.8	470	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.69967317119759	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAGAGTTGAGTGTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	3675049	3673376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_3673559_3674507_3674633_3674785_3674901_3675001
transcript_88090.known	chr8	-	504	4	FSM	ENSMUSG00000004630.19	ENSMUST00000136105.8	504	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.69967317119759	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGAGTGTGTGTTATTT	9774	False	NA	NA	False	AATAAA	-22	NA	3675545	3673370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_3673559_3674507_3674633_3674785_3674901_3675469
transcript_88093.known	chr8	+	376	1	FSM	ENSMUSG00000087687.4	ENSMUST00000208185.2	376	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	201	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5587	False	NA	NA	False	AATATA	-6	NA	3671550	3671926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_3671600_3671900
transcript_88094.known	chr8	+	1193	4	FSM	ENSMUSG00000087687.4	ENSMUST00000156380.4	1193	4	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_1	68.3715340376876	1534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTACTCTTCATTGATTT	5587	False	NA	NA	False	AAAACA	-14	NA	3671550	3674235	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_3671612_3672341_3672429_3672592_3672626_3673223
transcript_88099.known	chr8	+	1847	19	FSM	ENSMUSG00000004626.15	ENSMUST00000004745.9	1847	19	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_17	74.555886735479	821	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGCTCACCTCATTTTC	4602	False	NA	16	True	AATAAA	-22	NA	3681169	3692795	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_3681205_3682219_3682270_3682499_3682582_3683290_3683368_3683847_3683927_3684019_3684124_3684474_3684624_3685445_3685531_3685615_3685747_3685831_3685940_3686180_3686239_3686355_3686422_3686493_3686575_3687115_3687255_3689507_3689618_3691110_3691207_3691734_3691821_3691894_3692056_3692645
transcript_88101.known	chr8	+	874	5	FSM	ENSMUSG00000012705.17	ENSMUST00000012849.15	874	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.433012701892219	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATACAAAAAATAAATAATAA	NA	False	NA	NA	False	NA	NA	NA	3705769	3710110	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_3705844_3706005_3706146_3706907_3706986_3707249_3707392_3709670
transcript_88103.known	chr8	-	392	2	FSM	ENSMUSG00000089665.3	ENSMUST00000159364.3	392	2	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	0	606	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTTGATGTCTTTCTAT	NA	False	NA	-4	True	AATACA	-15	NA	3722362	3721187	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_3721397_3722179
transcript_88104.nnic	chr8	+	453	2	Genic_Genomic	ENSMUSG00000109277.2	novel	525	1	NA	NA	-95	0	multi-exon	FALSE	canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTGAGTCAGTGTCTACA	NA	False	NA	NA	False	AATAAA	-16	NA	3722334	3722954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr8_+_3722638_3722804
transcript_88105.known	chr8	+	525	1	FSM	ENSMUSG00000109277.2	ENSMUST00000208847.2	525	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTGAGTCAGTGTCTACA	NA	False	NA	NA	False	AATAAA	-16	NA	3722429	3722954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_3722400_3723000
transcript_88107.nnic	chr8	-	2002	6	NNC	ENSMUSG00000040197.5	novel	1802	6	NA	NA	-8328	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	2.72763633939717	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAGAGATGGACTGCTTT	5580	False	NA	NA	False	AATAAA	-21	NA	3912637	3897964	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_3899238_3901179_3901290_3902741_3902894_3903179_3903273_3903559_3903650_3912353
transcript_88108.nnic	chr8	-	1828	6	NNC	ENSMUSG00000040197.5	novel	1802	6	NA	NA	-8498	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	3.24961536185438	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAGAGATGGACTGCTTT	5410	False	NA	NA	False	AATAAA	-21	NA	3912807	3897964	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_3899238_3901179_3901290_3902741_3902894_3903179_3903273_3903559_3903650_3912697
transcript_88109.known	chr8	-	919	7	FSM	ENSMUSG00000031495.9	ENSMUST00000011445.8	919	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.74535599249993	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTCTCATCCTCTATGGA	NA	False	NA	NA	False	AATAAA	-21	NA	3928555	3921823	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_3922111_3923738_3923849_3926253_3926406_3927055_3927131_3927879_3927970_3928250_3928338_3928437
transcript_88110.known	chr8	-	672	6	FSM	ENSMUSG00000031495.9	ENSMUST00000209176.2	672	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.8	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTGGATGAACCTGACTC	NA	False	NA	NA	False	AATGAA	-36	NA	3928495	3921920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_3922111_3923738_3923849_3926253_3926406_3927055_3927131_3928250_3928338_3928437
transcript_88111.known	chr8	-	1186	8	FSM	ENSMUSG00000051906.16	ENSMUST00000145007.8	1186	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	2.39045721866879	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGATGTGTCCCATTTAG	NA	False	NA	NA	False	AATAAA	-19	NA	4155835	4152786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_4153250_4153621_4153735_4154101_4154254_4154484_4154572_4154822_4154892_4155270_4155355_4155465_4155547_4155698
transcript_88114.known	chr8	-	1150	6	FSM	ENSMUSG00000051906.16	ENSMUST00000156276.8	1150	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	2.31516738055805	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATGGTCTGATGTGTCCC	NA	False	NA	NA	False	AATAAA	-13	NA	4155542	4152792	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_4153250_4153621_4153735_4154101_4154254_4154484_4154572_4154822_4154892_4155270
transcript_88118.known	chr8	+	1542	11	FSM	ENSMUSG00000011832.17	ENSMUST00000239400.2	1542	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_10	5.9464274989274	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTGCTCCGGATGTAGT	NA	False	NA	NA	False	AATAAA	-24	NA	4216566	4243701	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_4216764_4233487_4233671_4235960_4236151_4237240_4237466_4237575_4237651_4238286_4238413_4241236_4241381_4241584_4241675_4243119_4243218_4243305_4243367_4243548
transcript_88122.known	chr8	+	542	4	FSM	ENSMUSG00000011832.17	ENSMUST00000177085.2	542	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	6.12825877028341	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGGGCGTGGGTGTGGG	2595	False	NA	NA	False	NA	NA	NA	4255728	4256603	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_4255971_4256055_4256152_4256231_4256328_4256495
transcript_88123.known	chr8	+	1578	12	FSM	ENSMUSG00000002948.20	ENSMUST00000110999.8	1578	12	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_11	89.4399470719399	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGTGTCCTAAGCCTGG	NA	False	NA	20	True	AATAAA	-21	NA	4288828	4297897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_4289034_4293303_4293446_4293552_4293620_4293742_4293857_4293950_4294071_4294228_4294337_4294426_4294607_4294694_4294776_4294860_4295004_4295542_4295589_4295694_4295826_4297656
transcript_88124.known	chr8	+	3497	11	FSM	ENSMUSG00000002948.20	ENSMUST00000110998.9	3497	11	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_7	24.9617707705203	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTGGTGTCCTAAGCCTG	NA	False	NA	19	True	AATAAA	-20	NA	4288739	4297896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_4289034_4293303_4293446_4293552_4293620_4293742_4293857_4293950_4294071_4294228_4294337_4294426_4294607_4294694_4294776_4294860_4295004_4295542_4295589_4295694
transcript_88128.known	chr8	+	1536	5	FSM	ENSMUSG00000011837.5	ENSMUST00000011981.5	1536	5	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_3	11.3880419739304	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGATTCCCCCTTTGAC	NA	False	NA	16	True	AATAAA	-16	NA	4303079	4306220	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_4303305_4304281_4304402_4304550_4304620_4304991_4305374_4305480
transcript_88132.known	chr8	+	956	5	FSM	ENSMUSG00000011837.5	ENSMUST00000208459.2	956	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	54.9971590175347	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAAGATGGAGGGACTGG	NA	False	NA	NA	False	NA	NA	NA	4303418	4305632	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_4303652_4304281_4304402_4304550_4304620_4304991_4305374_4305480
transcript_88134.known	chr8	+	1190	5	FSM	ENSMUSG00000011837.5	ENSMUST00000208316.2	1190	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	57.8548831128367	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTGTGATTCCCCCTTTG	NA	False	NA	14	True	AATAAA	-14	NA	4303093	4306218	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_4303305_4304281_4304402_4304550_4304582_4305283_4305374_4305480
transcript_88135.known	chr8	-	1212	2	FSM	ENSMUSG00000048644.9	ENSMUST00000053252.9	1212	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGCTGAGTTAACCAGTC	NA	False	NA	-16	True	AATAAA	-34	NA	4309274	4307659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_4308648_4309050
transcript_88137.known	chr8	-	1790	13	FSM	ENSMUSG00000002949.16	ENSMUST00000003029.14	1790	13	0	0	0	0	multi-exon	FALSE	canonical	3	458	junction_5	35.4920765805553	925	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGAACGGTTTGAAGTGT	NA	False	NA	-13	True	AATAAA	-22	NA	4325913	4309730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_4310256_4310511_4310623_4311907_4311998_4315225_4315277_4316555_4316681_4316769_4316863_4317254_4317341_4317636_4317777_4317863_4318014_4318299_4318381_4319854_4320026_4324136_4324233_4325842
transcript_8815.known	chr10	-	2009	12	FSM	ENSMUSG00000001783.4	ENSMUST00000001834.4	2009	12	0	0	0	0	multi-exon	FALSE	canonical	3	1317	junction_1	96.7988457003782	4101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTCTTCTCTTCCTGTG	NA	False	NA	-12	True	ATTAAA	-17	NA	85793687	85774500	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_85774984_85777762_85777883_85778351_85778463_85779072_85779262_85779678_85779855_85782054_85782215_85783040_85783198_85785329_85785487_85787218_85787319_85789300_85789369_85791582_85791662_85793478
transcript_88150.known	chr8	-	5743	6	FSM	ENSMUSG00000040028.11	ENSMUST00000098950.6	5743	6	0	0	0	0	multi-exon	FALSE	canonical	3	1349	junction_5	146.904594890698	170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAATCCCATTGTGTTCTT	NA	False	NA	NA	False	AATAAA	-33	NA	4375413	4335381	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_4339925_4345335_4345562_4351684_4351839_4354926_4355031_4361598_4361787_4374885
transcript_88154.nnic	chr8	+	730	4	NNC	ENSMUSG00000023235.15	novel	362	3	NA	NA	-2	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5.79271573232759	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGGATGTTTGTGTAAG	NA	False	NA	NA	False	NA	NA	NA	4375207	4384812	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_4375412_4377756_4377894_4383122_4383231_4384531
transcript_88157.nnic	chr8	+	622	3	NNC	ENSMUSG00000023235.15	novel	485	3	NA	NA	-2	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2.5	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGGATGTTTGTGTAAG	NA	False	NA	NA	False	NA	NA	NA	4375207	4384812	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_4375412_4377756_4377894_4384531
transcript_88158.known	chr8	+	1061	6	FSM	ENSMUSG00000023235.15	ENSMUST00000155797.8	1061	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	8.11418511004032	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATTAAAAAGTAATGACTGA	NA	False	NA	NA	False	AATAAA	-13	NA	4375209	4409998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_4375289_4377756_4377894_4403882_4404001_4404090_4404204_4407592_4407690_4409481
transcript_88159.known	chr8	+	1058	6	FSM	ENSMUSG00000023235.15	ENSMUST00000024004.9	1058	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	5.67097875150313	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATGTCTAGTGTGCAGTA	7913	False	NA	NA	False	AATAAA	-35	NA	4399587	4410020	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_4399656_4399771_4399895_4403882_4404001_4404090_4404204_4407592_4407690_4409481
transcript_88160.known	chr8	+	408	1	FSM	ENSMUSG00000109241.2	ENSMUST00000208558.2	408	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCTGGTGTGCATGTTTT	NA	False	NA	NA	False	AAGAAA	-9	NA	4441725	4442133	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_4441700_4442100
transcript_88165.nnic	chr8	+	4609	5	NNC	ENSMUSG00000058748.10	novel	2364	4	NA	NA	-34	2093	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_2	75.6405975650642	141	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATATACTGCTTTTTTATG	NA	False	NA	NA	False	AATAAA	-20	NA	4663132	4682324	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_4663279_4674903_4675022_4675839_4675967_4676163_4676225_4678167
transcript_88167.known	chr8	+	2364	4	FSM	ENSMUSG00000058748.10	ENSMUST00000202692.5	2364	4	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_1	17.1075032271418	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAATATATAAAAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	4663166	4680231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_4663279_4675839_4675967_4676163_4676225_4678167
transcript_88170.known	chr8	+	414	1	FSM	ENSMUSG00000109448.2	ENSMUST00000208203.2	414	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATTGTTTGCCAGTGAC	NA	False	NA	NA	False	NA	NA	NA	4702063	4702477	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_4702100_4702500
transcript_88171.nnic	chr8	+	730	2	Antisense	novelGene_ENSMUSG00000048484.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	6	junction_1	0	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGAAGTCTCTCTCCTGTT	NA	False	NA	NA	False	GGGGCT	-13	NA	4725549	4728208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr8_+_4725739_4727667
transcript_88175.known	chr8	-	2156	13	FSM	ENSMUSG00000022322.9	ENSMUST00000022945.9	2156	13	0	0	0	0	multi-exon	TRUE	canonical	3	204	junction_9	39.0672497112351	1274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTGTGAAATGTGGATT	NA	False	NA	-5	True	TATAAA	-15	NA	4829554	4785975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_4786408_4789124_4789267_4789594_4789682_4791847_4791967_4794446_4794579_4798704_4798826_4799291_4799461_4799551_4799786_4804219_4804313_4814880_4815090_4817906_4818023_4818143_4818312_4829420
transcript_88179.nic	chr8	-	770	4	ISM	ENSMUSG00000022322.9	ENSMUST00000208856.2	2365	12	-66	28571	-50	-189	5prime_fragment	FALSE	canonical	3	272	junction_2	23.7205958328763	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTTTCTTCTGTTTTC	NA	False	NA	NA	False	AATAAA	-20	NA	4829617	4814800	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_4815090_4817906_4818023_4818143_4818312_4829420
transcript_88180.known	chr8	-	2365	12	FSM	ENSMUSG00000022322.9	ENSMUST00000208856.2	2365	12	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_8	40.3396734765956	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGAAGAAAAGACTGAGTG	NA	False	NA	NA	False	TATAAA	-34	NA	4829551	4786229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_4786408_4789124_4789267_4789594_4789682_4791847_4791967_4794446_4794579_4798704_4799461_4799551_4799786_4804219_4804313_4814880_4815090_4817906_4818023_4818143_4818312_4829420
transcript_88181.known	chr8	-	1937	3	FSM	ENSMUSG00000022322.9	ENSMUST00000208381.2	1937	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	149	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATAGGCACTGATATACT	NA	False	NA	NA	False	TATAAA	-21	NA	4829567	4813467	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_4815090_4818143_4818312_4829420
transcript_88186.known	chr8	-	3197	4	FSM	ENSMUSG00000040459.12	ENSMUST00000048545.10	3197	4	0	0	0	0	multi-exon	FALSE	canonical	3	754	junction_2	83.8424448328861	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGGTGTGAGGACTCTT	5255	False	NA	NA	False	TATAAA	-16	NA	8740521	8715074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_8717417_8731383_8731468_8733747_8733974_8739976
transcript_88189.nnic	chr8	-	1250	4	NNC	ENSMUSG00000040459.12	novel	3197	4	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_3	408.778940531704	439	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTTTAAGCAATTTTTAT	5234	False	NA	-11	True	AATAAA	-35	NA	8740542	8716575	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_8717417_8731383_8731468_8733747_8733974_8740443
transcript_88191.known	chr8	-	1392	2	FSM	ENSMUSG00000031504.7	ENSMUST00000033900.7	1392	2	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGTTCTTGGGAATGTT	NA	False	NA	NA	False	ATTAAA	-17	NA	11528710	11503517	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_11504527_11528327
transcript_88193.known	chr8	-	1902	15	FSM	ENSMUSG00000056228.11	ENSMUST00000049461.7	1902	15	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_9	50.1547096288991	205	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCTGGAAGATTAACTGT	NA	False	NA	-16	True	AGTAAA	-36	NA	11600783	11563976	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_11564192_11564492_11564700_11566150_11566250_11567818_11567943_11568405_11568545_11568923_11568991_11576001_11576070_11579579_11579714_11580294_11580428_11587271_11587356_11591897_11592004_11592518_11592591_11597726_11597845_11600257_11600309_11600498
transcript_88198.known	chr8	+	1307	10	FSM	ENSMUSG00000031505.12	ENSMUST00000177955.8	1307	10	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_1	41.4568048294447	963	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGAGTTTGTGGTTGTTC	NA	False	NA	33	True	NA	NA	NA	11547505	11563287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_11547627_11552621_11552773_11554884_11554931_11555430_11555520_11556706_11556816_11559321_11559373_11559452_11559558_11560226_11560348_11561876_11561998_11562894
transcript_88203.known	chr8	+	1359	10	FSM	ENSMUSG00000031505.12	ENSMUST00000033901.11	1359	10	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	63.9388210675343	464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGAGTTTGTGGTTGTTC	NA	False	NA	33	True	NA	NA	NA	11547567	11563287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_11547741_11552621_11552773_11554884_11554931_11555430_11555520_11556706_11556816_11559321_11559373_11559452_11559558_11560226_11560348_11561876_11561998_11562894
transcript_88208.known	chr8	+	1108	9	FSM	ENSMUSG00000031505.12	ENSMUST00000178721.2	1108	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	91.7509366437204	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGAGTTTGTGGTTGTTC	NA	False	NA	33	True	NA	NA	NA	11547583	11563287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_11547627_11552621_11552773_11554884_11554931_11555430_11555520_11556706_11556816_11559321_11559373_11559452_11559558_11560226_11560348_11562894
transcript_88214.known	chr8	+	2830	9	FSM	ENSMUSG00000031505.12	ENSMUST00000178817.8	2830	9	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	84.6699474429977	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	11547566	11564960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_11547627_11552621_11552773_11554884_11554931_11556706_11556816_11559321_11559373_11559452_11559558_11560226_11560348_11561876_11561998_11562894
transcript_8823.known	chr10	+	5388	9	FSM	ENSMUSG00000001786.15	ENSMUST00000130320.8	5388	9	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_3	24.7878498462452	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACAATGGCCCTACCCTG	NA	False	NA	3	True	AATAAA	-20	NA	85857835	85887737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_85858009_85860279_85860575_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
transcript_88235.known	chr8	+	664	1	FSM	ENSMUSG00000031505.12	ENSMUST00000209932.2	664	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAAAAGAAAACGGTG	NA	False	NA	NA	False	NA	NA	NA	11547586	11548250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_11547600_11548200
transcript_88236.known	chr8	+	382	3	FSM	ENSMUSG00000045969.9	ENSMUST00000210670.2	382	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	227	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGCACACCAGGACATCAG	NA	False	NA	NA	False	NA	NA	NA	11606064	11611620	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_11606201_11607002_11607046_11611417
transcript_88238.known	chr8	+	2241	2	FSM	ENSMUSG00000045969.9	ENSMUST00000211007.2	2241	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCATGTTTATTTCCTTAT	NA	False	NA	15	True	NA	NA	NA	11605570	11613250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_11605979_11611417
transcript_8824.nic	chr10	+	1802	9	NIC	ENSMUSG00000001786.15	novel	5388	9	NA	NA	-116	0	combination_of_known_junctions	TRUE	canonical	3	23	junction_1	77.6434156899347	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCAGACTTGACTTTTTT	NA	False	NA	10	True	AGTAAA	-13	NA	85857719	85884187	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_+_85858009_85860431_85860575_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
transcript_88240.known	chr8	+	1866	2	FSM	ENSMUSG00000045969.9	ENSMUST00000210740.2	1866	2	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCATGTTTATTTCCTTAT	NA	False	NA	15	True	NA	NA	NA	11606062	11613250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_11606096_11611417
transcript_88242.known	chr8	+	721	2	FSM	ENSMUSG00000045969.9	ENSMUST00000209646.2	721	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGTGGGGAGAGCGAGAAGA	NA	False	NA	NA	False	CATAAA	-30	NA	11606110	11612048	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_11606201_11611417
transcript_88244.known	chr8	+	2814	2	FSM	ENSMUSG00000045969.9	ENSMUST00000054399.6	2814	2	0	0	0	0	multi-exon	FALSE	canonical	3	454	junction_1	0	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGTTTATTTCCTTATG	NA	False	NA	16	True	NA	NA	NA	11606065	11613251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_11607046_11611417
transcript_88246.known	chr8	+	1971	2	FSM	ENSMUSG00000045969.9	ENSMUST00000209565.2	1971	2	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_1	0	647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCATGTTTATTTCCTTAT	NA	False	NA	15	True	NA	NA	NA	11608428	11613250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_11608567_11611417
transcript_88249.nic	chr8	-	2417	7	NIC	ENSMUSG00000031508.15	novel	2398	7	NA	NA	-137	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	194.263280684287	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	NA	False	NA	-2	True	AATAAA	-15	NA	11685173	11661582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_11662948_11665814_11665911_11669061_11669298_11670261_11670374_11678438_11678531_11682865_11683019_11684810
transcript_8825.known	chr10	+	1799	9	FSM	ENSMUSG00000001786.15	ENSMUST00000117597.2	1799	9	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	75.1232320923428	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCAGACTTGACTTTTTT	NA	False	NA	10	True	AGTAAA	-13	NA	85858060	85884187	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_85858195_85860279_85860575_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
transcript_88250.known	chr8	-	2398	7	FSM	ENSMUSG00000031508.15	ENSMUST00000210530.2	2398	7	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_4	160.305350988529	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	NA	False	NA	-2	True	AATAAA	-15	NA	11685754	11661582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11670261_11670374_11678438_11678531_11682865_11683019_11685410
transcript_88252.nic	chr8	-	2467	7	NIC	ENSMUSG00000031508.15	novel	2447	7	NA	NA	-137	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_4	217.434281259112	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	NA	False	NA	-2	True	AATAAA	-15	NA	11685173	11661582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_11662948_11665814_11665911_11669061_11669298_11673696_11673859_11678438_11678531_11682865_11683019_11684810
transcript_88253.known	chr8	-	2447	7	FSM	ENSMUSG00000031508.15	ENSMUST00000211174.2	2447	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_4	195.638626610959	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTGTCTCTGAAACTGC	NA	False	NA	-3	True	AATAAA	-14	NA	11685754	11661583	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11673696_11673859_11678438_11678531_11682865_11683019_11685410
transcript_88257.nic	chr8	-	2305	6	NIC	ENSMUSG00000031508.15	novel	2398	7	NA	NA	-137	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_5	185.378531658874	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	NA	False	NA	-2	True	AATAAA	-15	NA	11685173	11661582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_11662948_11665814_11665911_11669061_11669298_11678438_11678531_11682865_11683019_11684810
transcript_88258.known	chr8	-	2285	6	FSM	ENSMUSG00000031508.15	ENSMUST00000033905.13	2285	6	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_3	111.790876193006	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTGTCTCTGAAACTGC	NA	False	NA	-3	True	AATAAA	-14	NA	11685754	11661583	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11678438_11678531_11682865_11683019_11685410
transcript_8826.known	chr10	+	1655	9	FSM	ENSMUSG00000001786.15	ENSMUST00000120344.8	1655	9	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	78.2747564672034	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCAGACTTGACTTTTTT	NA	False	NA	10	True	AGTAAA	-13	NA	85858052	85884187	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_85858195_85860431_85860575_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
transcript_88261.known	chr8	-	5156	5	FSM	ENSMUSG00000031508.15	ENSMUST00000169782.3	5156	5	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_2	122.541829593001	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	NA	False	NA	-2	True	AATAAA	-15	NA	11685757	11661582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_11665911_11669061_11669298_11678438_11678531_11682865_11683019_11685410
transcript_88265.known	chr8	-	1359	3	FSM	ENSMUSG00000031508.15	ENSMUST00000211389.2	1359	3	0	0	0	0	multi-exon	FALSE	canonical	3	398	junction_2	21.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAACTGACAATACCAG	NA	False	NA	NA	False	NA	NA	NA	11685754	11677668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_11678531_11682865_11683019_11685410
transcript_88269.nnic	chr8	-	819	6	NNC	ENSMUSG00000031509.11	novel	1263	6	NA	NA	-3580	0	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_3	15.5897402159241	321	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATCTGATAGGGCTGTTT	NA	False	NA	-8	True	AATAAA	-22	NA	11716184	11705477	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_11705682_11706108_11706190_11711671_11711756_11712589_11712692_11715035_11715099_11715899
transcript_88270.nnic	chr8	-	623	6	NNC	ENSMUSG00000031509.11	novel	1263	6	NA	NA	-3599	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	21.0466149297221	37	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATCTGATAGGGCTGTTT	NA	False	NA	-8	True	AATAAA	-22	NA	11716203	11705477	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_11705682_11706108_11706190_11711671_11711756_11712589_11712692_11715035_11715099_11716114
transcript_88271.nnic	chr8	-	901	6	NNC	ENSMUSG00000031509.11	novel	1263	6	NA	NA	-3580	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_4	20.8173004974228	39	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATCTGATAGGGCTGTTT	NA	False	NA	-8	True	AATAAA	-22	NA	11716184	11705477	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_11705682_11706108_11706190_11711671_11711756_11712589_11712774_11715035_11715099_11715899
transcript_88276.nnic	chr8	-	735	5	NNC	ENSMUSG00000031509.11	novel	1263	6	NA	NA	-3580	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	21.6376408140999	66	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATCTGATAGGGCTGTTT	NA	False	NA	-8	True	AATAAA	-22	NA	11716184	11705477	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_11705682_11706108_11706190_11712589_11712692_11715035_11715099_11715899
transcript_88283.known	chr8	-	785	1	FSM	ENSMUSG00000109933.2	ENSMUST00000209657.2	785	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	253	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCAGATTTTTAATAGTG	NA	False	NA	NA	False	NA	NA	NA	11734243	11733458	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_11733500_11734200
transcript_88286.nnic	chr8	+	1129	8	NNC	ENSMUSG00000031511.17	novel	4451	20	NA	NA	-18	1291	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_7	32.945223555199	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGAGAATCTTCATTGTG	9610	False	NA	NA	False	NA	NA	NA	11808335	11852250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_11808518_11831154_11831240_11832524_11832656_11835712_11835915_11841455_11841545_11850459_11850555_11850772_11850869_11852001
transcript_88290.nic	chr8	+	1601	4	ISM	ENSMUSG00000031511.17	ENSMUST00000074856.13	4451	20	-18	48304	-18	700	5prime_fragment	FALSE	canonical	3	82	junction_3	10.4986771653491	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GACAAAAAAAAAAAAAAAGA	9610	False	NA	NA	False	NA	NA	NA	11808335	11836915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_11808518_11831154_11831240_11832524_11832656_11835712
transcript_88291.known	chr8	+	2205	3	FSM	ENSMUSG00000031511.17	ENSMUST00000209686.2	2205	3	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_2	12	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGTGATTCTCCTGCCTCA	9591	False	NA	NA	False	NA	NA	NA	11808316	11836215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_11808518_11831154_11832656_11835712
transcript_88293.nnic	chr8	+	763	3	NNC	ENSMUSG00000109772.2	novel	429	2	NA	NA	-4829	178	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTCTTGATTTCTTTC	6200	False	NA	NA	False	NA	NA	NA	11919329	11944291	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_11919465_11924137_11924331_11943856
transcript_88295.nnic	chr8	+	787	3	NNC	ENSMUSG00000109772.2	novel	429	2	NA	NA	-4220	178	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	1.5	19	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTCTTGATTTCTTTC	6809	False	NA	NA	False	NA	NA	NA	11919938	11944291	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_11920098_11924137_11924331_11943856
transcript_88296.nnic	chr8	+	2049	3	NNC	ENSMUSG00000109772.2	novel	429	2	NA	NA	-4220	18320	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	0.5	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTCTGGTGAAAGCCGTG	6809	False	NA	NA	False	AATAAA	-14	NA	11919938	11962433	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_11920098_11924137_11924331_11960736
transcript_88298.known	chr8	+	1087	2	FSM	ENSMUSG00000109582.2	ENSMUST00000211062.2	1087	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACATGTCTCTGTCCATT	NA	False	NA	NA	False	AATAAA	-22	NA	12552898	12555341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_12552995_12554350
transcript_88299.nnic	chr8	+	883	7	NNC	ENSMUSG00000010435.8	novel	967	8	NA	NA	6829	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.763762615825973	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAGTTGAGTCATTTAG	NA	False	NA	NA	False	AAAAAG	-22	NA	12629877	12650744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_12630145_12630943_12631001_12635636_12635745_12636434_12636540_12639204_12639277_12648943_12649043_12650569
transcript_883.known	chr1	-	400	4	FSM	ENSMUSG00000098234.8	ENSMUST00000182742.2	400	4	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	223.143202649977	10856	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGCTGTGGGCAGTAATT	NA	False	NA	-15	True	AATAAA	-12	NA	10014342	10012249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_10012375_10012547_10012617_10012834_10012943_10014244
transcript_88301.known	chr8	-	3797	22	FSM	ENSMUSG00000000759.15	ENSMUST00000000776.15	3797	22	0	0	0	0	multi-exon	TRUE	canonical	3	142	junction_11	12.9206544206397	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCATGTGGTTTCTGAA	NA	False	NA	1	True	ATTAAA	-18	NA	12722248	12664276	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_12665297_12666021_12666139_12671798_12671940_12674817_12674950_12675024_12675114_12682237_12682374_12686945_12687015_12687666_12687803_12689525_12689716_12690700_12690810_12691096_12691208_12698620_12698788_12699689_12699823_12700153_12700223_12703363_12703490_12704233_12704353_12705805_12705979_12707445_12707658_12708299_12708378_12711299_12711368_12713931_12714040_12721954
transcript_88303.nic	chr8	-	1242	10	ISM	ENSMUSG00000000759.15	ENSMUST00000167547.8	5724	16	0	19293	0	208	5prime_fragment	FALSE	canonical	3	153	junction_4	12.328828005938	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCACTGCCAAGGTCTCCT	NA	False	NA	NA	False	ATTAAA	-20	NA	12722123	12699702	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_12699823_12700153_12700223_12703363_12703490_12704233_12704353_12705805_12705979_12707445_12707658_12708299_12708378_12711299_12711368_12713931_12714040_12721954
transcript_88305.known	chr8	+	604	4	FSM	ENSMUSG00000031441.16	ENSMUST00000143359.8	604	4	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_3	25.3683967872539	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGTGATGTGCTGCTTT	NA	False	NA	10	True	AATAAA	-17	NA	12906959	12912205	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_12907000_12907882_12907987_12909313_12909480_12911911
transcript_88308.nnic	chr8	-	494	2	Intergenic	novelGene_120	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTTCCTTTACATTGTTT	NA	False	NA	NA	False	NA	NA	NA	12923702	12922346	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr8_-_12922597_12923458
transcript_88309.known	chr8	-	406	2	FSM	ENSMUSG00000086770.2	ENSMUST00000153095.2	406	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAAGCCCTGACTTTTGC	NA	False	NA	NA	False	NA	NA	NA	12965758	12962525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_12962596_12965422
transcript_88310.known	chr8	-	2860	14	FSM	ENSMUSG00000038542.15	ENSMUST00000164416.8	2860	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	84.1979915149282	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCATTTGTGTTTTGTCC	NA	False	NA	-6	True	AATAAA	-17	NA	13155459	13127188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_13128290_13128547_13128672_13129637_13129764_13129894_13129969_13131263_13131365_13135322_13135465_13136250_13136327_13140656_13140761_13144142_13144198_13145830_13145873_13147602_13147669_13148562_13148637_13150324_13150415_13154774
transcript_88314.nnic	chr8	-	1116	7	NNC	ENSMUSG00000038542.15	novel	2678	11	NA	NA	-7	-7603	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	141.34080168947	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGCATTACCTTGTGTCT	NA	False	NA	NA	False	AATAAA	-34	NA	13154838	13142976	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_13143702_13144142_13144198_13145830_13145873_13147602_13147669_13148562_13148637_13150324_13150415_13154774
transcript_88315.known	chr8	+	3728	20	FSM	ENSMUSG00000031446.15	ENSMUST00000016680.14	3728	20	0	0	0	0	multi-exon	TRUE	canonical	2	216	junction_3	44.2424070515772	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTTTACTAATACATTGG	NA	False	NA	26	True	AATAAA	-23	NA	13155620	13197940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_13155904_13156193_13156310_13165469_13165574_13171676_13171747_13172806_13172881_13173466_13173630_13173869_13173960_13174790_13174874_13177709_13177778_13183122_13183242_13183648_13183842_13185864_13185970_13186132_13186244_13186335_13186422_13186795_13186904_13190202_13190317_13192492_13192599_13192961_13193135_13194276_13194430_13196531
transcript_8832.known	chr10	+	1498	8	FSM	ENSMUSG00000001786.15	ENSMUST00000001837.14	1498	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	86.6814482423301	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTGTTATATTAGTAAAAG	NA	False	NA	-20	True	NA	NA	NA	85857850	85884157	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_85858009_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
transcript_88320.known	chr8	+	2006	3	FSM	ENSMUSG00000031446.15	ENSMUST00000135371.2	2006	3	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_1	20.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAATTAGTCTGGCAAGTA	NA	False	NA	NA	False	TTTAAA	-4	NA	13155739	13167195	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_13155904_13156193_13156310_13165469
transcript_88329.known	chr8	-	3013	8	FSM	ENSMUSG00000038515.11	ENSMUST00000210317.2	3013	8	0	0	0	0	multi-exon	FALSE	canonical	3	341	junction_2	30.9812319750826	657	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAAAAGTAAATAAAAAT	3637	False	NA	NA	False	NA	NA	NA	13250620	13225161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_13227143_13229322_13229509_13229582_13229756_13236882_13236980_13239622_13239748_13242049_13242209_13250048_13250201_13250480
transcript_88335.known	chr8	-	997	6	FSM	ENSMUSG00000038515.11	ENSMUST00000209465.2	997	6	0	0	0	0	multi-exon	FALSE	canonical	3	341	junction_2	24.7111310951158	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAAAATTAGTGTTCTCC	NA	False	NA	-32	True	TTTAAA	-7	NA	13242255	13226932	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_13227143_13229322_13229509_13229582_13229756_13236882_13236980_13239622_13239748_13242049
transcript_88336.known	chr8	-	1030	7	FSM	ENSMUSG00000038515.11	ENSMUST00000209691.2	1030	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	138.954029168723	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTCTCCATTTTTTCCTA	3701	False	NA	-21	True	TTTAAA	-18	NA	13250556	13226921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_13227143_13229322_13229509_13229582_13229756_13236882_13236980_13239622_13239748_13250048_13250201_13250480
transcript_88337.known	chr8	-	1416	8	FSM	ENSMUSG00000038515.11	ENSMUST00000211128.2	1416	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	136.812399485797	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCCCGTGTGAGGTCTAC	3640	False	NA	NA	False	AATAAA	-18	NA	13250617	13228560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_13228948_13229322_13229509_13229582_13229756_13236882_13236980_13239622_13239748_13242049_13242209_13250048_13250201_13250480
transcript_88338.nic	chr8	+	704	2	ISM	ENSMUSG00000099338.2	ENSMUST00000187595.2	856	3	-127	5917	-27	0	5prime_fragment	FALSE	canonical	3	6	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGCCTCCATCTTT	NA	False	NA	NA	False	NA	NA	NA	13250692	13251790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_13251294_13251687
transcript_88339.known	chr8	+	755	2	FSM	ENSMUSG00000099338.2	ENSMUST00000185622.2	755	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGATTCATTTTTATTTA	NA	False	NA	NA	False	NA	NA	NA	13250727	13257714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_13251294_13257525
transcript_88340.known	chr8	+	1039	1	FSM	ENSMUSG00000099338.2	ENSMUST00000190461.2	1039	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGCCTCCATCTTT	NA	False	NA	NA	False	NA	NA	NA	13250751	13251790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_13250800_13251800
transcript_88341.known	chr8	-	1372	7	FSM	ENSMUSG00000031448.13	ENSMUST00000033825.11	1372	7	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_2	0.942809041582063	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTTCCTCACCTTCTCA	2498	False	NA	NA	False	TATAAA	-20	NA	13304162	13285654	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_13285989_13292251_13292385_13292518_13292647_13295468_13295610_13296041_13296168_13298552_13298718_13303817
transcript_88343.known	chr8	-	2729	7	FSM	ENSMUSG00000038506.14	ENSMUST00000203467.3	2729	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	15.2397506541282	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTGATGTCCTTTATTC	NA	False	NA	-3	True	AATAAA	-14	NA	13337830	13305963	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_13307977_13308946_13309044_13311384_13311468_13321589_13321721_13328516_13328686_13330916_13331126_13337803
transcript_88344.known	chr8	-	2955	6	FSM	ENSMUSG00000038506.14	ENSMUST00000110838.8	2955	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	13.5558105622644	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTGATGTCCTTTATTC	NA	False	NA	-3	True	AATAAA	-14	NA	13338131	13305963	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_13307977_13308946_13309044_13321589_13321721_13328516_13328686_13330908_13331126_13337803
transcript_88345.known	chr8	+	4335	13	FSM	ENSMUSG00000038497.8	ENSMUST00000045229.7	4335	13	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_7	13.4873912311545	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTGCTTTCCTGAGTGGT	NA	False	NA	NA	False	AATAGA	-22	NA	13338210	13372924	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_13338388_13341656_13342172_13342709_13342890_13344845_13345038_13345979_13346109_13348212_13348306_13353727_13353915_13358345_13358467_13360144_13360341_13363805_13363957_13368842_13368923_13369762_13369913_13370760
transcript_88347.nnic	chr8	+	2287	10	NNC	ENSMUSG00000038497.8	novel	4335	13	NA	NA	-302	-6868	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_8	17.5295165540092	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGAGGCAAAGACTTATC	NA	False	NA	NA	False	TATAAA	-15	NA	13337887	13364038	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_13338388_13341656_13342172_13342709_13342890_13344845_13345038_13345979_13346109_13348212_13348306_13353727_13353915_13358345_13358467_13360203_13360341_13363805
transcript_88349.known	chr8	+	2208	6	FSM	ENSMUSG00000038497.8	ENSMUST00000211645.2	2208	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	21.0675105316219	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGCAAATGGGTCAAAA	NA	False	NA	NA	False	NA	NA	NA	13338237	13347649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_13338388_13341656_13342172_13342709_13342890_13344845_13345038_13345979_13346109_13346607
transcript_88350.known	chr8	+	2723	5	FSM	ENSMUSG00000038497.8	ENSMUST00000210063.2	2723	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_3	9.44391338376205	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13338189	13347617	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_13338388_13341656_13342172_13342709_13342890_13344845_13345038_13345979
transcript_88354.nic	chr8	+	2641	13	NIC	ENSMUSG00000038482.12	novel	2682	13	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	3	53	junction_5	371.107314518171	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGTGTTTCTGTAACTC	2079	False	NA	94	True	AATAAA	-24	NA	13388726	13428448	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_13388807_13389664_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420168_13420275_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
transcript_88356.known	chr8	+	2511	12	FSM	ENSMUSG00000038482.12	ENSMUST00000209885.2	2511	12	0	0	0	0	multi-exon	FALSE	canonical	3	547	junction_1	150.974903502547	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGTGTTTCTGTAACTC	2103	False	NA	94	True	AATAAA	-24	NA	13388750	13428448	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_13388807_13389664_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
transcript_88364.known	chr8	+	2421	11	FSM	ENSMUSG00000038482.12	ENSMUST00000209396.2	2421	11	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_2	290.39449030586	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAAGCTCTGTGTTTCTG	2120	False	NA	88	True	AATAAA	-18	NA	13388767	13428442	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_13388807_13389664_13389740_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
transcript_88371.known	chr8	-	1378	7	FSM	ENSMUSG00000031449.11	ENSMUST00000033826.4	1378	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATGCCTTTCCTGACCCC	NA	False	NA	NA	False	ATTAAA	-25	NA	13446825	13436204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_13436788_13437428_13437540_13438762_13438820_13439665_13439866_13439989_13440104_13443435_13443565_13446641
transcript_88372.known	chr8	-	2548	15	FSM	ENSMUSG00000031451.7	ENSMUST00000033828.7	2548	15	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_8	9.27719389312373	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTTGGTCACTGTCT	5760	False	NA	1	True	AATAAA	-23	NA	13544490	13515373	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_13515901_13516626_13516856_13518191_13518365_13520218_13520388_13521448_13521614_13524656_13524847_13525038_13525158_13526111_13526234_13527043_13527167_13528251_13528375_13529006_13529130_13533673_13533737_13535670_13535696_13543845_13544013_13544260
transcript_88373.nic	chr8	-	1598	2	ISM	ENSMUSG00000031453.17	ENSMUST00000137822.2	3023	10	13751	268	7756	-268	3prime_fragment	FALSE	canonical	3	71	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGGAGTGGTTTGGATT	NA	False	NA	-2	True	ATTAAA	-18	NA	13620287	13617217	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_13618767_13620238
transcript_88377.known	chr8	+	2301	18	FSM	ENSMUSG00000038416.16	ENSMUST00000043962.9	2301	18	0	0	0	0	multi-exon	FALSE	canonical	3	559	junction_10	60.600055957127	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCCAAGCTGGTAGAGTG	NA	False	NA	17	True	AATAAA	-24	NA	13807675	13831938	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_13807855_13808997_13809053_13809139_13809238_13810529_13810569_13810976_13811118_13812850_13813011_13813819_13813912_13814568_13814703_13816417_13816498_13817537_13817588_13818560_13818635_13819376_13819503_13821297_13821451_13823340_13823405_13825707_13825770_13827471_13827608_13829227_13829319_13831371
transcript_88388.known	chr8	+	884	2	FSM	ENSMUSG00000038416.16	ENSMUST00000137360.2	884	2	0	0	0	0	multi-exon	FALSE	canonical	3	614	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCCAAGCTGGTAGAGTG	NA	False	NA	17	True	AATAAA	-24	NA	13829001	13831938	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_13829319_13831371
transcript_88391.known	chr8	+	2057	9	FSM	ENSMUSG00000038398.9	ENSMUST00000043767.9	2057	9	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_6	38.5873603010105	698	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGCATCTTGTGGTGCT	NA	False	NA	NA	False	NA	NA	NA	13835614	13849193	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_13835885_13836146_13836254_13837364_13837472_13841881_13841981_13842099_13842211_13845439_13845496_13845583_13845740_13846458_13846593_13848176
transcript_884.known	chr1	-	559	3	FSM	ENSMUSG00000098234.8	ENSMUST00000182498.8	559	3	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_2	159	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGCTGTGGGCAGTAATT	NA	False	NA	-15	True	AATAAA	-12	NA	10014328	10012249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_10012617_10012834_10012943_10014244
transcript_88400.known	chr8	+	3698	5	FSM	ENSMUSG00000038398.9	ENSMUST00000211724.2	3698	5	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_1	25.1731503789256	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGTCAGTGTATCAGAAT	NA	False	NA	NA	False	AATAAA	-17	NA	13835634	13845234	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_13835885_13836146_13836254_13837364_13837472_13841881_13841981_13842099
transcript_88403.known	chr8	+	1131	2	FSM	ENSMUSG00000038398.9	ENSMUST00000211643.2	1131	2	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAGGAGCCTAGACAAGT	NA	False	NA	NA	False	AATACA	-12	NA	13835644	13837037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_13835885_13836146
transcript_88405.known	chr8	+	4013	2	FSM	ENSMUSG00000047710.9	ENSMUST00000051870.8	4013	2	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_1	0	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCATGTGTACTTAATTT	NA	False	NA	17	True	ATTAAA	-19	NA	13919640	13931639	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_13919812_13927797
transcript_88407.known	chr8	+	3977	2	FSM	ENSMUSG00000047710.9	ENSMUST00000128557.3	3977	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCATGTGTACTTAATTT	NA	False	NA	17	True	ATTAAA	-19	NA	13919703	13931639	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_13919839_13927797
transcript_8841.nic	chr10	-	913	4	ISM	ENSMUSG00000059602.15	ENSMUST00000121789.2	4006	7	-33	115840	-19	-56288	5prime_fragment	FALSE	canonical	1	2	junction_2	1.4142135623731	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTAAGAAATAAGGCTTG	NA	False	NA	NA	False	CATAAA	-21	NA	86334779	86243296	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_86243569_86284729_86284788_86302842_86303300_86334653
transcript_88412.known	chr8	-	793	4	FSM	ENSMUSG00000031458.9	ENSMUST00000033839.9	793	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	307.613393726606	4659	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGTATGCTCTGTCTGCG	NA	False	NA	-8	True	AATAAA	-16	NA	13940268	13934793	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_13935202_13935665_13935882_13937759_13937827_13940166
transcript_88414.known	chr8	+	2035	11	FSM	ENSMUSG00000038365.9	ENSMUST00000209913.2	2035	11	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_9	44.5353791945235	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATAATTTTTCTGCAACAA	NA	False	NA	13	True	AATAAA	-19	NA	13957802	13990521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_13957864_13964943_13965085_13970947_13971049_13971884_13971935_13973924_13974018_13976947_13977042_13979255_13979441_13981184_13981365_13985145_13985290_13988921_13988949_13989562
transcript_88416.known	chr8	+	2012	10	FSM	ENSMUSG00000038365.9	ENSMUST00000043520.5	2012	10	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_9	11.3572731903828	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAATTTTTCTGCAACAAT	NA	False	NA	14	True	AATAAA	-20	NA	13957802	13990522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_13957864_13964943_13965085_13970947_13971049_13971884_13971935_13973924_13974018_13976947_13977042_13979255_13979441_13981181_13981365_13985145_13985290_13989562
transcript_88417.nnic	chr8	+	2106	10	NNC	ENSMUSG00000038365.9	novel	2012	10	NA	NA	-66	0	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_4	33.5507722860094	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAATTTTTCTGCAACAAT	NA	False	NA	14	True	AATAAA	-20	NA	13957736	13990522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_13957864_13964943_13965085_13970947_13971049_13971884_13971963_13973924_13974018_13976947_13977042_13979255_13979441_13981181_13981365_13985145_13985290_13989562
transcript_88419.nic	chr8	+	667	6	ISM	ENSMUSG00000038365.9	ENSMUST00000209913.2	2035	11	-66	13419	-66	-4578	5prime_fragment	FALSE	canonical	3	104	junction_1	5.46260011349906	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCACAGAGTATACAACCTG	NA	False	NA	NA	False	AATAAA	-19	NA	13957736	13977102	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_13957864_13964943_13965085_13970947_13971049_13971884_13971935_13973924_13974018_13976947
transcript_8842.known	chr10	+	4722	5	FSM	ENSMUSG00000020044.14	ENSMUST00000020234.14	4722	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	4.15331193145904	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCTGCTGTCTCTTGCCTT	NA	False	NA	19	True	AGTAAA	-21	NA	86136235	86185370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_86136839_86174236_86174320_86179796_86179909_86180417_86180540_86181568
transcript_88421.nnic	chr8	+	655	5	NNC	ENSMUSG00000038365.9	novel	2012	10	NA	NA	-66	-8979	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	48.9815016103018	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTTGTGAGTCGTGTGGA	NA	False	NA	NA	False	ATTAAA	-10	NA	13957736	13972701	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_13957864_13964943_13965085_13970947_13971049_13971884_13971935_13972465
transcript_88422.nnic	chr8	+	685	5	NNC	ENSMUSG00000038365.9	novel	2012	10	NA	NA	-66	-8977	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	49.4115371143218	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGAGTCGTGTGGATT	NA	False	NA	NA	False	ATTAAA	-12	NA	13957736	13972703	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_13957864_13964943_13965085_13970947_13971049_13971884_13971963_13972465
transcript_88428.known	chr8	-	373	4	FSM	ENSMUSG00000050052.13	ENSMUST00000145695.2	373	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_3	120.875509880575	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCTGAAGGCAGAGAAGAAA	4525	False	NA	NA	False	ACTAAA	-39	NA	14025032	14004112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_14004136_14005719_14005818_14024540_14024730_14024969
transcript_88435.known	chr8	-	323	2	FSM	ENSMUSG00000050052.13	ENSMUST00000210414.2	323	2	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGGCTGCCCACCCTGG	4864	False	NA	NA	False	NA	NA	NA	14024693	14003965	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_14004136_14024540
transcript_88436.known	chr8	-	2463	3	FSM	ENSMUSG00000050052.13	ENSMUST00000062613.12	2463	3	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_2	12.5	649	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTAGTGTGTATATTTA	4780	False	NA	-4	True	ATTAAA	-18	NA	14024777	14002007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_14004136_14005719_14005818_14024540
transcript_88441.nnic	chr8	+	712	5	NNC	ENSMUSG00000110058.2	novel	514	3	NA	NA	-5329	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4.5	12	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTGTCTGGTAATTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	14043610	14053561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_14043720_14043977_14044016_14044473_14044585_14052843_14053014_14053277
transcript_88450.nnic	chr8	-	1655	6	NNC	ENSMUSG00000051978.10	novel	1557	6	NA	NA	-34	0	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_5	79.7696684210233	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATATTTGTGATAAGATT	NA	False	NA	-6	True	AATAAA	-18	NA	14140335	14077560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_14078154_14080592_14080785_14083335_14083765_14114204_14114340_14128769_14128917_14140176
transcript_88451.known	chr8	-	1557	6	FSM	ENSMUSG00000051978.10	ENSMUST00000110813.5	1557	6	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_5	39.1591624016653	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATATTTGTGATAAGATT	NA	False	NA	-6	True	AATAAA	-18	NA	14140301	14077560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_14078154_14080592_14080785_14083335_14083765_14114204_14114340_14128769_14128917_14140240
transcript_88454.nnic	chr8	-	1322	6	NNC	ENSMUSG00000051978.10	novel	1557	6	NA	NA	-34	-333	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_5	79.7696684210233	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGCTGTCATTTGACTC	NA	False	NA	NA	False	NA	NA	NA	14140335	14077893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_14078154_14080592_14080785_14083335_14083765_14114204_14114340_14128769_14128917_14140176
transcript_88469.known	chr8	+	2130	1	FSM	ENSMUSG00000074461.3	ENSMUST00000098916.3	2130	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAGACTTGCCTTGGTCA	4307	False	NA	NA	False	NA	NA	NA	14140460	14142590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_14140500_14142600
transcript_8847.known	chr10	+	1622	3	FSM	ENSMUSG00000097412.3	ENSMUST00000218095.2	1622	3	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	95.5	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTTATGTGTATGAGT	NA	False	NA	1	True	AGTAAA	-10	NA	86521388	86525818	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_86521473_86521743_86521861_86524397
transcript_88471.nic	chr8	+	2468	4	NIC	ENSMUSG00000026317.8	novel	6857	3	NA	NA	-153	2880	combination_of_known_junctions	FALSE	canonical	3	37	junction_2	81.7897032367495	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGAGGTATGATGCCTAT	NA	False	NA	10	True	TATAAA	-18	NA	14938850	14947939	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_14939119_14940491_14940624_14944571_14945231_14946530
transcript_88472.nnic	chr8	+	1216	3	NNC	ENSMUSG00000026317.8	novel	6857	3	NA	NA	-178	2880	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	81	48	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGAGGTATGATGCCTAT	NA	False	NA	10	True	TATAAA	-18	NA	14938825	14947939	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_14939119_14944571_14944993_14947437
transcript_88473.known	chr8	+	6857	3	FSM	ENSMUSG00000026317.8	ENSMUST00000027554.8	6857	3	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_1	24.5	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGTGCCATATATATGT	NA	False	NA	6	True	NA	NA	NA	14938110	14951720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_14939119_14944571_14945231_14946530
transcript_88477.nnic	chr8	+	689	3	NNC	ENSMUSG00000055675.7	novel	224	2	NA	NA	-782	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAATGTTGCTGTGTTCTTT	3886	False	NA	10	True	AATAAA	-26	NA	15081607	15083329	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_15081729_15082410_15082509_15082859
transcript_88478.known	chr8	+	4662	14	FSM	ENSMUSG00000039842.16	ENSMUST00000039412.15	4662	14	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_4	12.6528524276628	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAGCAATAATTTTAATT	NA	False	NA	NA	False	AATAAA	-17	NA	18645146	18853205	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_18645652_18646938_18647031_18657294_18657414_18672622_18672711_18675575_18675691_18677133_18677257_18679561_18679652_18681531_18682660_18691580_18691682_18718961_18719000_18721107_18721271_18738997_18739076_18838254_18838493_18851421
transcript_88482.known	chr8	+	2067	8	FSM	ENSMUSG00000039842.16	ENSMUST00000146819.8	2067	8	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_4	14.4391757354209	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGTTGACCTGTATACC	NA	False	NA	NA	False	ATTAAA	-22	NA	18645597	18682917	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_18645652_18646938_18647031_18657294_18657414_18672622_18672711_18675575_18675691_18677133_18677257_18679561_18679652_18681531
transcript_88483.known	chr8	-	652	5	FSM	ENSMUSG00000031465.7	ENSMUST00000170200.2	652	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	0.82915619758885	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGCCACAACCATGATGAT	NA	False	NA	NA	False	NA	NA	NA	18749563	18742102	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_18742225_18744412_18744544_18748059_18748227_18749083_18749186_18749433
transcript_88487.nnic	chr8	-	1295	7	NNC	ENSMUSG00000039814.16	novel	3911	7	NA	NA	-105	29093	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	11.5181016954473	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATGGTCCAACAAATTTGC	NA	False	NA	NA	False	ATTAAA	-27	NA	19001096	18953651	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_18953881_18987242_18987355_18989083_18989254_18990628_18990839_18991960_18992146_18998574_18998759_19000891
transcript_88490.known	chr8	-	2838	7	FSM	ENSMUSG00000039814.16	ENSMUST00000095438.10	2838	7	0	0	0	0	multi-exon	TRUE	canonical	2	24	junction_4	7.05730511991338	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTAGTGTTAGTATCTA	NA	False	NA	-3	True	NA	NA	NA	19000991	18982744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_18984622_18987242_18987355_18989083_18989254_18990628_18990839_18991960_18992146_18998574_18998759_19000891
transcript_88495.nnic	chr8	+	596	2	Genic_Genomic	ENSMUSG00000081094.5	novel	591	1	NA	NA	-31	97	multi-exon	FALSE	canonical	3	362	junction_1	0	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGGACTCAGAGCTAAACAA	7086	False	NA	NA	False	AATAAA	-32	NA	19542920	19543639	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr8_+_19543064_19543186
transcript_88497.nnic	chr8	+	623	2	Genic_Genomic	ENSMUSG00000081094.5	novel	591	1	NA	NA	-30	97	multi-exon	FALSE	canonical	0	0	junction_1	0	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGGACTCAGAGCTAAACAA	7087	False	NA	NA	False	AATAAA	-32	NA	19542921	19543639	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr8_+_19543199_19543293
transcript_88498.nnic	chr8	-	661	2	Antisense	novelGene_ENSMUSG00002075262.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCATTTTTTTAATGGGGT	NA	False	NA	NA	False	NA	NA	NA	19543639	19542921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr8_-_19543324_19543380
transcript_885.known	chr1	-	784	5	FSM	ENSMUSG00000025916.11	ENSMUST00000155163.2	784	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAACTATCCTGTAT	NA	False	NA	NA	False	TATAAA	-13	NA	10079355	10065287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_10065488_10069625_10069765_10070195_10070363_10073459_10073679_10079296
transcript_8850.known	chr10	+	1665	3	FSM	ENSMUSG00000097412.3	ENSMUST00000220419.2	1665	3	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	104.5	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTTATGTGTATGAGT	NA	False	NA	1	True	AGTAAA	-10	NA	86521474	86525818	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_86521602_86521743_86521861_86524397
transcript_88500.known	chr8	+	591	1	FSM	ENSMUSG00000081094.5	ENSMUST00000122422.3	591	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1123	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCCCTCGTGTCTGTAC	7117	False	NA	NA	False	AAGAAA	-4	NA	19542951	19543542	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_19543000_19543500
transcript_88527.nnic	chr8	+	2054	6	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	-44	-2739	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	519.250844968017	78	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTTTATGAGTGTGT	NA	False	NA	NA	False	ATTAAA	-23	NA	20016421	20043149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_20016689_20030550_20030757_20035860_20036160_20039783_20039904_20041811_20042916_20043091
transcript_8853.known	chr10	-	2825	18	FSM	ENSMUSG00000020048.14	ENSMUST00000020238.14	2825	18	0	0	0	0	multi-exon	FALSE	canonical	3	2860	junction_11	342.987041630793	5984	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGTGCTTATTTTCATAA	NA	False	NA	-40	True	AATAAA	-16	NA	86541373	86526703	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
transcript_88544.nnic	chr8	+	1091	5	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	-44	-3878	at_least_one_novel_splicesite	FALSE	canonical	3	882	junction_1	265.429369136123	145	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTGCTCAGCGAGAGCCT	NA	False	NA	NA	False	AGTAAA	-27	NA	20016421	20042010	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_20016689_20030550_20030757_20035860_20036160_20039783_20039904_20041811
transcript_88545.nnic	chr8	+	1306	5	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	-44	-3663	at_least_one_novel_splicesite	FALSE	canonical	3	882	junction_1	265.429369136123	124	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGAGTCTTGAGATATT	NA	False	NA	NA	False	ATTAAA	-25	NA	20016421	20042225	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_20016689_20030550_20030757_20035860_20036160_20039783_20039904_20041811
transcript_88546.nnic	chr8	+	1368	5	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	-44	-3601	at_least_one_novel_splicesite	FALSE	canonical	3	882	junction_1	265.429369136123	127	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTCTCCTGTCTCAGTGTT	NA	False	NA	NA	False	CATAAA	-18	NA	20016421	20042287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_20016689_20030550_20030757_20035860_20036160_20039783_20039904_20041811
transcript_88547.nnic	chr8	+	2230	5	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	-44	-2739	at_least_one_novel_splicesite	FALSE	canonical	3	882	junction_1	265.429369136123	65	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTTTATGAGTGTGT	NA	False	NA	NA	False	ATTAAA	-23	NA	20016421	20043149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_20016689_20030550_20030757_20035860_20036160_20039783_20039904_20041811
transcript_88555.nic	chr8	+	1258	5	ISM	ENSMUSG00000071793.13	ENSMUST00000140111.8	4009	6	-44	13488	-44	-3878	5prime_fragment	FALSE	canonical	3	606	junction_2	352.991147197773	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTGCTCAGCGAGAGCCT	NA	False	NA	NA	False	AGTAAA	-27	NA	20016421	20042010	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_20016689_20030550_20030924_20035860_20036160_20039783_20039904_20041811
transcript_88556.nic	chr8	+	1473	5	ISM	ENSMUSG00000071793.13	ENSMUST00000140111.8	4009	6	-44	13273	-44	-3663	5prime_fragment	FALSE	canonical	3	606	junction_2	352.991147197773	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGAGTCTTGAGATATT	NA	False	NA	NA	False	ATTAAA	-25	NA	20016421	20042225	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_20016689_20030550_20030924_20035860_20036160_20039783_20039904_20041811
transcript_88584.nic	chr8	+	432	2	ISM	ENSMUSG00000071793.13	ENSMUST00000140111.8	4009	6	-44	24783	-44	-15173	5prime_fragment	FALSE	canonical	3	882	junction_1	0	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGGAGAACTACTGTTTA	NA	False	NA	NA	False	NA	NA	NA	20016421	20030715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_20016689_20030550
transcript_88587.nic	chr8	+	882	2	ISM	ENSMUSG00000071793.13	ENSMUST00000140111.8	4009	6	-44	24333	-44	-14723	5prime_fragment	FALSE	canonical	3	882	junction_1	0	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGCATCCAGTCTTCTCCT	NA	False	NA	NA	False	ATTAAA	-22	NA	20016421	20031165	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_20016689_20030550
transcript_88588.known	chr8	+	4009	6	FSM	ENSMUSG00000071793.13	ENSMUST00000140111.8	4009	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	534.914423062232	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACAGTGTGGTTTTGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	20016465	20055498	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_20016689_20030550_20030924_20035860_20036160_20039783_20039904_20041811_20042185_20052877
transcript_88598.nnic	chr8	+	1407	6	Fusion	ENSMUSG00000071793.13_ENSMUSG00000071796.14	novel	4009	6	NA	NA	-24	3825	multi-exon	FALSE	canonical	3	11	junction_4	275.742198439049	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGTGGTTTTGTTTTAAA	NA	False	NA	NA	False	AATAAA	-19	NA	20016441	20182492	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr8_+_20016689_20157802_20158009_20163109_20163409_20173024_20173282_20179856_20180121_20182358
transcript_8861.known	chr10	+	623	2	FSM	ENSMUSG00000089881.2	ENSMUST00000162458.2	623	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCATTCTTTACTGAATGC	NA	False	NA	NA	False	NA	NA	NA	86744624	86745877	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_86744697_86745326
transcript_88616.nnic	chr8	+	1071	5	Fusion	ENSMUSG00000071793.13_ENSMUSG00000071796.14	novel	4009	6	NA	NA	-24	-3735	multi-exon	FALSE	canonical	3	510	junction_1	328.553268131668	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTGCTCAGCGAGAGCCT	NA	False	NA	NA	False	AGTAAA	-27	NA	20016441	20169259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr8_+_20016689_20157802_20158009_20163109_20163409_20167037_20167158_20169060
transcript_8862.known	chr10	+	915	1	FSM	ENSMUSG00000112222.2	ENSMUST00000219550.2	915	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2849	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGAGCTTTCAGTGATGC	NA	False	NA	NA	False	ATTAAA	-16	NA	87802708	87803623	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_87802700_87803600
transcript_8863.nic	chr10	-	3256	11	NIC	ENSMUSG00000035365.16	novel	3594	11	NA	NA	-18	0	intron_retention	FALSE	canonical	3	53	junction_4	10.555093557141	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGGGTGGTTTATACTT	NA	False	NA	-11	True	ATTAAA	-13	NA	87982821	87927293	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_-_87929049_87929456_87929590_87946160_87946243_87947457_87947637_87950382_87950564_87960669_87960825_87962018_87962190_87968955_87969061_87975727_87975959_87979801_87979958_87982713
transcript_88636.nnic	chr8	+	1082	3	Fusion	ENSMUSG00000071793.13_ENSMUSG00000071796.14	novel	4009	6	NA	NA	-24	-9256	multi-exon	FALSE	canonical	3	510	junction_1	66.5	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCTAACACATTGAACAGAA	NA	False	NA	NA	False	NA	NA	NA	20016441	20163738	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr8_+_20016689_20157802_20158009_20163109
transcript_8864.known	chr10	-	3594	11	FSM	ENSMUSG00000035365.16	ENSMUST00000048518.16	3594	11	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_10	14.3666279968544	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGGGTGGTTTATACTT	NA	False	NA	-11	True	ATTAAA	-13	NA	87982803	87927293	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_87929049_87929456_87929590_87946160_87946243_87947457_87947637_87950382_87950564_87960669_87960825_87962018_87962190_87968955_87969061_87975727_87975959_87979801_87979958_87982357
transcript_88642.known	chr8	+	4659	5	FSM	ENSMUSG00000071796.14	ENSMUST00000153748.2	4659	5	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	481.210452920549	221	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAAAGTAGATGTCTT	7188	False	NA	NA	False	AATAAA	-5	NA	20143847	20172994	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_20143957_20157802_20158000_20163109_20163409_20167037_20167158_20169060
transcript_88645.nnic	chr8	+	1161	4	NNC	ENSMUSG00000110649.2	novel	422	2	NA	NA	-21147	3971	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_2	4.49691252107735	127	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGTGTCTGTTAACAACA	5242	False	NA	NA	False	NA	NA	NA	20555552	20588308	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_20555835_20576529_20576922_20584150_20584338_20588008
transcript_88647.nnic	chr8	+	1084	4	NNC	ENSMUSG00000110649.2	novel	422	2	NA	NA	-21114	3971	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	9.89949493661167	21	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGTGTCTGTTAACAACA	5275	False	NA	NA	False	NA	NA	NA	20555585	20588308	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_20555791_20576529_20576922_20584150_20584338_20588008
transcript_88648.nnic	chr8	+	412	2	NNC	ENSMUSG00000110649.2	novel	422	2	NA	NA	-21087	-7618	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	0	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCTGGTGTGCCTGAGCA	5302	False	NA	NA	False	AATGAA	-19	NA	20555612	20576719	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_20555835_20576529
transcript_88650.nnic	chr8	+	791	2	NNC	ENSMUSG00000110649.2	novel	422	2	NA	NA	-21147	-7299	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	0	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGACAGAACAACGGTAGG	5242	False	NA	NA	False	NA	NA	NA	20555552	20577038	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_20555835_20576529
transcript_88651.nnic	chr8	+	861	2	NNC	ENSMUSG00000110649.2	novel	422	2	NA	NA	-21091	-7173	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	0	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACACATCCAGTCTTCTC	5298	False	NA	NA	False	ATTAAA	-20	NA	20555608	20577164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_20555835_20576529
transcript_88652.nnic	chr8	+	1056	2	NNC	ENSMUSG00000110649.2	novel	422	2	NA	NA	-21147	-7034	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	0	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATTGAACCATTCTTCAA	5242	False	NA	NA	False	ATTAAA	-17	NA	20555552	20577303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_20555835_20576529
transcript_8868.nic	chr10	-	1906	11	NIC	ENSMUSG00000035365.16	novel	3594	11	NA	NA	-18	-1350	combination_of_known_junctions	FALSE	canonical	3	53	junction_4	10.555093557141	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATATGTTGTGGTTTTTTTT	NA	False	NA	NA	False	TTTAAA	-7	NA	87982821	87928643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_-_87929049_87929456_87929590_87946160_87946243_87947457_87947637_87950382_87950564_87960669_87960825_87962018_87962190_87968955_87969061_87975727_87975959_87979801_87979958_87982713
transcript_88688.nnic	chr8	+	1256	4	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-177	288	multi-exon	FALSE	canonical	3	112	junction_3	226.010324247957	544	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGGGCATTCAAAGTTAG	NA	False	NA	NA	False	AATAAA	-12	NA	20697807	20727554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr8_+_20698090_20711891_20712098_20717197_20717493_20727081
transcript_88689.nnic	chr8	+	1370	4	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-124	288	multi-exon	FALSE	canonical	3	112	junction_3	241.687125570781	90	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGGGCATTCAAAGTTAG	NA	False	NA	NA	False	AATAAA	-12	NA	20697860	20727554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr8_+_20698090_20711891_20712265_20717197_20717493_20727081
transcript_88700.nnic	chr8	+	1262	6	NNC	ENSMUSG00000095403.9	novel	955	5	NA	NA	-17421	-180	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	216.45082582425	36	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGATGTCTTTTTCTTTCA	5791	False	NA	NA	False	AATAAA	-14	NA	21090191	21122607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_21090445_21107448_21107655_21112754_21113054_21116684_21116805_21118696_21118865_21122391
transcript_88703.nnic	chr8	+	1429	6	NNC	ENSMUSG00000095403.9	novel	955	5	NA	NA	-17421	-180	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	216.584948692193	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGATGTCTTTTTCTTTCA	5791	False	NA	NA	False	AATAAA	-14	NA	21090191	21122607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_21090445_21107448_21107822_21112754_21113054_21116684_21116805_21118696_21118865_21122391
transcript_88710.nnic	chr8	+	1220	5	NNC	ENSMUSG00000095403.9	novel	955	5	NA	NA	-17421	314	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	256.799897780353	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGCATTCAAAGTTAGGGC	5791	False	NA	NA	False	AATAAA	-15	NA	21090191	21123101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_21090445_21107448_21107655_21116684_21116805_21118696_21118865_21122628
transcript_88715.nnic	chr8	+	1231	4	NNC	ENSMUSG00000095403.9	novel	955	5	NA	NA	-17421	314	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	114.257992669611	72	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGCATTCAAAGTTAGGGC	5791	False	NA	NA	False	AATAAA	-15	NA	21090191	21123101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_21090445_21107448_21107655_21112754_21113054_21122628
transcript_88717.nnic	chr8	+	1010	4	NNC	ENSMUSG00000095403.9	novel	955	5	NA	NA	-17363	330	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	19.6015872373189	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCAGGAAGGGGATGCCTT	5849	False	NA	NA	False	AATAAA	-31	NA	21090249	21123117	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_21090445_21107448_21107655_21116684_21116805_21122628
transcript_88719.nnic	chr8	+	1398	4	NNC	ENSMUSG00000095403.9	novel	955	5	NA	NA	-17421	314	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	58.5548176213253	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGCATTCAAAGTTAGGGC	5791	False	NA	NA	False	AATAAA	-15	NA	21090191	21123101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_21090445_21107448_21107822_21112754_21113054_21122628
transcript_88720.nnic	chr8	+	1235	4	NNC	ENSMUSG00000095403.9	novel	955	5	NA	NA	-17421	330	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	19.8662192343351	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCAGGAAGGGGATGCCTT	5791	False	NA	NA	False	AATAAA	-31	NA	21090191	21123117	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_21090445_21107448_21107822_21116684_21116805_21122628
transcript_88722.nnic	chr8	+	1083	3	NNC	ENSMUSG00000095403.9	novel	955	5	NA	NA	-17421	-9409	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_1	109	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAACCCTAACACATTGAA	5791	False	NA	NA	False	NA	NA	NA	21090191	21113378	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_21090445_21107448_21107655_21112754
transcript_88728.nnic	chr8	+	607	2	NNC	ENSMUSG00000095403.9	novel	955	5	NA	NA	-17302	314	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGCATTCAAAGTTAGGGC	5910	False	NA	NA	False	AATAAA	-15	NA	21090310	21123101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_21090445_21122628
transcript_88730.known	chr8	+	411	2	FSM	ENSMUSG00000074446.4	ENSMUST00000098899.4	411	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTTGTGTTCACATTCT	NA	False	NA	NA	False	AATAAA	-16	NA	21545062	21546032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_21545269_21545827
transcript_88731.known	chr8	+	398	2	FSM	ENSMUSG00000074444.5	ENSMUST00000098898.5	398	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTGTGTTCACATTCT	6520	False	NA	NA	False	AATAAA	-16	NA	21624657	21625614	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_21624851_21625409
transcript_88732.known	chr8	+	377	2	FSM	ENSMUSG00000074442.5	ENSMUST00000098896.5	377	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTTGTGTTCACATTCT	NA	False	NA	NA	False	AATAAA	-16	NA	21681629	21682565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_21681802_21682360
transcript_88733.known	chr8	+	397	2	FSM	ENSMUSG00000060208.6	ENSMUST00000079528.6	397	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTTGTGTTCACATTC	NA	False	NA	NA	False	AATAAA	-15	NA	22145795	22146751	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_22145989_22146547
transcript_88734.known	chr8	+	419	2	FSM	ENSMUSG00000064213.6	ENSMUST00000080533.6	419	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGTGTGTTTATGTTC	7529	False	NA	NA	False	AATAAA	-15	NA	22224509	22225487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_22224725_22225283
transcript_88738.known	chr8	+	4960	4	FSM	ENSMUSG00000063362.14	ENSMUST00000072572.13	4960	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_2	9.93310961716756	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCTGGCTCCCTTTGGTG	NA	False	NA	5	True	NA	NA	NA	22550736	22561643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_22550787_22551901_22552133_22555015_22555948_22557896
transcript_88740.known	chr8	+	4833	4	FSM	ENSMUSG00000063362.14	ENSMUST00000110737.3	4833	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	31.1234102672999	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCTGGCTCCCTTTGGTG	NA	False	NA	5	True	NA	NA	NA	22550737	22561643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_22550787_22551901_22552133_22555141_22555948_22557896
transcript_88742.nic	chr8	+	1171	3	ISM	ENSMUSG00000063362.14	ENSMUST00000072572.13	4960	4	-25	5763	-25	417	5prime_fragment	FALSE	canonical	3	45	junction_2	11	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAGAATTACTTGTCTGA	NA	False	NA	NA	False	AATAAA	-17	NA	22550711	22555880	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_22550787_22551901_22552133_22555015
transcript_88743.nic	chr8	+	1656	3	ISM	ENSMUSG00000063362.14	ENSMUST00000072572.13	4960	4	-25	5278	-25	902	5prime_fragment	FALSE	canonical	3	45	junction_2	11	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCTACTTGGTCTATGAG	NA	False	NA	NA	False	GATAAA	-18	NA	22550711	22556365	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_22550787_22551901_22552133_22555015
transcript_88746.known	chr8	-	2050	16	FSM	ENSMUSG00000031478.17	ENSMUST00000110730.10	2050	16	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	9.555917305814	160	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGTGTGCTGGTTTTCAA	NA	False	NA	2	True	AATACA	-17	NA	22656451	22618298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_22618807_22619360_22619485_22621221_22621354_22622065_22622216_22623008_22623112_22632905_22632956_22636946_22637020_22638498_22638700_22639876_22639932_22646991_22647079_22647165_22647234_22648642_22648727_22650207_22650306_22650385_22650474_22652339_22652511_22656393
transcript_88747.nnic	chr8	-	2327	9	NNC	ENSMUSG00000037725.9	novel	2593	9	NA	NA	275	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_8	79.0283770236995	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCATTGATTGACTTATT	NA	False	NA	-1	True	AATAAA	-26	NA	22675560	22658460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_22658991_22659728_22659964_22663277_22663348_22665016_22665188_22665770_22665976_22666789_22667596_22667682_22667756_22669529_22669612_22675405
transcript_88748.known	chr8	-	2593	9	FSM	ENSMUSG00000037725.9	ENSMUST00000046916.9	2593	9	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_6	17.1973835219198	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAGAAACAAATGAGAGTTA	NA	False	NA	NA	False	NA	NA	NA	22675835	22658175	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_22658991_22659728_22659964_22663277_22663348_22665016_22665188_22665770_22665976_22666789_22667596_22667682_22667756_22669529_22669612_22675699
transcript_88753.nic	chr8	-	1897	6	ISM	ENSMUSG00000037725.9	ENSMUST00000046916.9	2593	9	-24	6441	-24	0	5prime_fragment	FALSE	canonical	3	249	junction_3	10.2683981223947	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACTTTAGAAAATAGATACC	NA	False	NA	NA	False	NA	NA	NA	22675859	22664616	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_22665188_22665770_22665976_22666789_22667596_22667682_22667756_22669529_22669612_22675699
transcript_88762.known	chr8	+	3574	14	FSM	ENSMUSG00000031479.10	ENSMUST00000033866.9	3574	14	0	0	0	0	multi-exon	TRUE	canonical	3	316	junction_5	36.370219952707	1516	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGGAATTTTTCTGTTTT	NA	False	NA	9	True	GATAAA	-22	NA	22682824	22710859	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_22682983_22688913_22688983_22692289_22692361_22695682_22695798_22696792_22696883_22697872_22697960_22700284_22700318_22700404_22700483_22701553_22701689_22703510_22703577_22706527_22706593_22707140_22707226_22708227_22708305_22708414
transcript_88771.nic	chr8	+	582	6	ISM	ENSMUSG00000031479.10	ENSMUST00000033866.9	3574	14	-16	12924	-16	-10713	5prime_fragment	FALSE	canonical	3	316	junction_5	36.7564960245125	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAACCGATAAAAACATTTC	NA	False	NA	NA	False	AAAAAG	-5	NA	22682808	22697935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_22682983_22688913_22688983_22692289_22692361_22695682_22695798_22696792_22696883_22697872
transcript_88775.known	chr8	+	4422	5	FSM	ENSMUSG00000031480.16	ENSMUST00000069828.10	4422	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.4790199457749	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGCGTGTATTTCAGAACT	NA	False	NA	NA	False	AATATA	-24	NA	22717328	22751350	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_22717446_22728470_22728614_22733012_22733973_22742168_22742328_22748307
transcript_88776.known	chr8	+	3276	4	FSM	ENSMUSG00000031480.16	ENSMUST00000160585.2	3276	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.816496580927726	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGTTCTCAGTGATGACTGC	NA	False	NA	NA	False	ATTAAA	-18	NA	22717360	22750395	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_22717446_22728470_22728614_22733012_22733973_22748307
transcript_88778.known	chr8	-	3430	7	FSM	ENSMUSG00000031482.10	ENSMUST00000033871.8	3430	7	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_4	26.1002341411379	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGCTCTGGTCGTAGTGT	NA	False	NA	-6	True	NA	NA	NA	22888613	22865566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_22867998_22869299_22869459_22870853_22871024_22873222_22873361_22879829_22880089_22885728_22885844_22888455
transcript_8879.known	chr10	+	1267	10	FSM	ENSMUSG00000035351.17	ENSMUST00000052355.15	1267	10	0	0	0	0	multi-exon	FALSE	canonical	3	484	junction_1	64.7921653547559	3473	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATGTTCCTATTGTGTT	NA	False	NA	12	True	AATAAA	-20	NA	87982853	88014252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_87982935_87984023_87984242_87989385_87989511_87994719_87994793_87996737_87996833_88007856_88007948_88010247_88010430_88010744_88010796_88012934_88013029_88013995
transcript_88791.known	chr8	+	1515	7	FSM	ENSMUSG00000031533.5	ENSMUST00000033934.5	1515	7	0	0	0	0	multi-exon	FALSE	canonical	3	683	junction_2	48.7100263463968	2860	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCCTTGTGTAATTTGC	NA	False	NA	NA	False	NA	NA	NA	22901376	22919681	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_22901601_22904731_22905020_22909742_22909902_22911325_22911467_22914362_22914437_22917763_22917908_22919196
transcript_88798.known	chr8	+	2625	5	FSM	ENSMUSG00000031533.5	ENSMUST00000211083.2	2625	5	0	0	0	0	multi-exon	FALSE	canonical	3	683	junction_2	50.8551865594848	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCACTGTGTCGTGTGAGA	NA	False	NA	NA	False	NA	NA	NA	22901413	22916212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_22901601_22904731_22905020_22909742_22909902_22911325_22911467_22914362
transcript_88801.known	chr8	+	3566	11	FSM	ENSMUSG00000037656.10	ENSMUST00000067786.9	3566	11	0	0	0	0	multi-exon	FALSE	canonical	3	459	junction_6	45.0493063209635	218	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTACTTCTGACGTCTTTTT	NA	False	NA	15	True	AATAAA	-20	NA	22966803	23059628	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_22966942_23025034_23025589_23028819_23028961_23030375_23030462_23035519_23035617_23048957_23049075_23050512_23050717_23050902_23051495_23054044_23054231_23055629_23055715_23058262
transcript_88802.known	chr8	-	1402	4	FSM	ENSMUSG00000031534.16	ENSMUST00000033935.16	1402	4	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_1	20.3960780543711	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCCTTGCATCATTTTG	NA	False	NA	-1	True	NA	NA	NA	22966898	22952630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_22953392_22961464_22961590_22963457_22963597_22966521
transcript_88814.known	chr8	-	1354	9	FSM	ENSMUSG00000008892.13	ENSMUST00000009036.11	1354	9	0	0	0	0	multi-exon	FALSE	canonical	3	2053	junction_8	117.712573669936	8842	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTCATCTGACTTCTTAG	NA	False	NA	-11	True	AATAAA	-22	NA	23083774	23067101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_23067619_23068058_23068117_23069007_23069159_23070355_23070584_23072098_23072152_23073599_23073753_23077568_23077619_23078741_23078811_23083699
transcript_88815.known	chr8	-	517	5	FSM	ENSMUSG00000008892.13	ENSMUST00000210096.2	517	5	0	0	0	0	multi-exon	FALSE	canonical	3	2053	junction_4	157.696504400066	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGCAGGTCTATGTGGG	NA	False	NA	NA	False	NA	NA	NA	23083727	23071934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_23072152_23073599_23073753_23077568_23077619_23078741_23078811_23083699
transcript_88817.nnic	chr8	-	1189	14	NNC	ENSMUSG00000031536.7	novel	1201	14	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_4	51.8827763829876	107	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTCTTAACAAATGTGTTT	NA	False	NA	NA	False	AATAAA	-20	NA	23143477	23118141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_23118386_23120358_23120499_23121470_23121536_23127083_23127116_23129949_23130021_23130374_23130448_23130528_23130584_23132320_23132373_23135060_23135111_23137428_23137488_23138197_23138273_23140504_23140572_23143075_23143134_23143329
transcript_88818.known	chr8	-	1201	14	FSM	ENSMUSG00000031536.7	ENSMUST00000033938.7	1201	14	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_8	16.1157058899497	924	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTCTTAACAAATGTGTTT	NA	False	NA	NA	False	AATAAA	-20	NA	23143434	23118141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_23118386_23120358_23120499_23121470_23121536_23127083_23127171_23129949_23130021_23130374_23130448_23130528_23130584_23132320_23132373_23135060_23135111_23137428_23137488_23138197_23138273_23140504_23140572_23143075_23143134_23143329
transcript_8882.known	chr10	+	1277	10	FSM	ENSMUSG00000035351.17	ENSMUST00000169309.3	1277	10	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	172.048514547568	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATATGTTCCTATTGTG	NA	False	NA	10	True	AATAAA	-18	NA	87982938	88014250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_87983032_87984023_87984242_87989385_87989511_87994719_87994793_87996737_87996833_88007856_88007948_88010247_88010430_88010744_88010796_88012934_88013029_88013995
transcript_88833.known	chr8	-	3354	9	FSM	ENSMUSG00000031536.7	ENSMUST00000210950.2	3354	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	68.8620677514116	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTTTTCTTGTTGTAAC	NA	False	NA	NA	False	NA	NA	NA	23143451	23127227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_23130021_23130374_23130448_23130528_23130584_23132320_23132373_23137428_23137488_23138197_23138273_23140504_23140572_23143075_23143134_23143329
transcript_88835.known	chr8	-	3580	22	FSM	ENSMUSG00000031537.16	ENSMUST00000033939.13	3580	22	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	18.670796433355	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATGAGTCATGTCATTGA	NA	False	NA	0	True	NA	NA	NA	23196594	23149227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_23150476_23151417_23151509_23153705_23153834_23155504_23155653_23155827_23155928_23156006_23156057_23157239_23157350_23158699_23158762_23158960_23159113_23159622_23159747_23161646_23161762_23162338_23162534_23163378_23163509_23164978_23165087_23168805_23168931_23171678_23171769_23172741_23172831_23181073_23181144_23183830_23183949_23185178_23185274_23196097_23196221_23196485
transcript_88839.nnic	chr8	-	897	8	NNC	ENSMUSG00000031537.16	novel	1106	7	NA	NA	-3	96	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	38.291044405091	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTGTGTCTAAGGATGTA	NA	False	NA	NA	False	ATTAAA	-14	NA	23196608	23171131	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_23171321_23171678_23171769_23172741_23172831_23181073_23181144_23183830_23183949_23185178_23185274_23196097_23196221_23196485
transcript_88840.known	chr8	-	601	3	FSM	ENSMUSG00000031537.16	ENSMUST00000150214.2	601	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	54.5	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTATTTTATTTTTTGA	NA	False	NA	NA	False	AATAAA	-36	NA	23196541	23192467	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_23192890_23196097_23196221_23196485
transcript_88841.known	chr8	-	3417	9	FSM	ENSMUSG00000031539.7	ENSMUST00000163739.3	3417	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	7.29618907375624	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTATGTCTGGTTACTGAG	NA	False	NA	-1	True	AATAAA	-18	NA	23295620	23277369	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_23279470_23280896_23281042_23281260_23281469_23282733_23282868_23283081_23283168_23287097_23287236_23289656_23289829_23293775_23294119_23295529
transcript_88842.known	chr8	-	3373	9	FSM	ENSMUSG00000031539.7	ENSMUST00000210656.2	3373	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	1.96452920568771	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTATGTCTGGTTACTGAG	NA	False	NA	-1	True	AATAAA	-18	NA	23295638	23277369	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_23279470_23280896_23281042_23281260_23281469_23282733_23282868_23283081_23283168_23287097_23287236_23289656_23289829_23293775_23294119_23295591
transcript_88844.known	chr8	-	1351	6	FSM	ENSMUSG00000031539.7	ENSMUST00000210148.2	1351	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_4	1.89736659610103	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGACTCCAATGCAGTGAG	NA	False	NA	NA	False	AATAAA	-19	NA	23295638	23282302	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_23282868_23283081_23283168_23287097_23287236_23289656_23289829_23293775_23294119_23295591
transcript_88845.known	chr8	+	2238	3	FSM	ENSMUSG00000063672.8	ENSMUST00000071588.8	2238	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.5	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCATCCATAGACCAAATTG	NA	False	NA	NA	False	AATAAA	-44	NA	23643284	23648964	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_23643986_23646216_23646387_23647597
transcript_88849.known	chr8	-	5518	13	FSM	ENSMUSG00000031545.7	ENSMUST00000167004.3	5518	13	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_11	21.3085793884894	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCTTTGATTTATTAAAAT	NA	False	NA	NA	False	AATAAA	-19	NA	23698362	23661280	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_23664677_23665355_23665436_23665523_23665653_23669430_23669517_23669784_23669841_23670116_23670233_23670648_23670743_23670875_23670966_23671788_23671864_23672678_23672980_23674544_23674615_23680731_23681709_23698314
transcript_88852.known	chr8	-	2316	7	FSM	ENSMUSG00000031545.7	ENSMUST00000211260.2	2316	7	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_5	17.4992063312089	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTGTGGGGGAGTTTGT	NA	False	NA	NA	False	AATAAA	-17	NA	23698361	23669986	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_23670743_23670875_23670966_23671788_23671864_23672678_23672980_23674544_23674615_23680731_23681709_23698314
transcript_88853.known	chr8	+	851	1	FSM	ENSMUSG00000103925.2	ENSMUST00000192979.2	851	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGGATGTGTTTGCCACT	NA	False	NA	NA	False	NA	NA	NA	23698527	23699378	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_23698500_23699400
transcript_88860.known	chr8	-	1349	8	FSM	ENSMUSG00000031546.7	ENSMUST00000033950.7	1349	8	0	0	0	0	multi-exon	FALSE	canonical	3	605	junction_1	23.2914103462707	2627	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTCAAATGTCTTTTTTT	NA	False	NA	-22	True	AAAACA	-3	NA	23727675	23716631	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_23717192_23717264_23717356_23719431_23719521_23719621_23719720_23722620_23722735_23724769_23724857_23726995_23727116_23727485
transcript_88864.known	chr8	-	1792	6	FSM	ENSMUSG00000015341.18	ENSMUST00000051094.9	1792	6	0	0	0	0	multi-exon	TRUE	canonical	3	715	junction_5	234.329170185873	2830	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCTCTTGTCTTAGTCTA	NA	False	NA	-19	True	AATAAA	-1	NA	23747090	23731361	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_23732648_23734746_23734810_23735878_23735981_23740264_23740418_23746689_23746823_23747035
transcript_88865.known	chr8	-	1945	5	FSM	ENSMUSG00000015341.18	ENSMUST00000121783.7	1945	5	0	0	0	0	multi-exon	FALSE	canonical	3	1223	junction_2	41.2946727799119	718	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAAACCCTCTCTTGTCT	NA	False	NA	-26	True	AGTAAA	-10	NA	23747037	23731368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_23732648_23734746_23734810_23735878_23735981_23740264_23740418_23746689
transcript_88866.known	chr8	+	4372	3	FSM	ENSMUSG00000031548.8	ENSMUST00000033952.8	4372	3	0	0	0	0	multi-exon	FALSE	canonical	3	1172	junction_2	95.5	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCGTGAGTTGTGATTGAC	NA	False	NA	24	True	ACTAAA	-17	NA	23901517	23939648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_23902345_23907345_23907424_23936181
transcript_88873.known	chr8	-	745	5	FSM	ENSMUSG00000037437.19	ENSMUST00000133088.2	745	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.29903810567666	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCCCTTGTGAAAATTAT	NA	False	NA	NA	False	AATAAA	-16	NA	25438820	25410923	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_25411381_25412275_25412352_25414080_25414143_25428120_25428186_25438735
transcript_88875.known	chr8	-	3985	22	FSM	ENSMUSG00000031555.16	ENSMUST00000084035.12	3985	22	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_2	31.0462313449736	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTCGTCCTCTTTATA	NA	False	NA	NA	False	AATAAA	-35	NA	25506938	25439626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_25441027_25445947_25446016_25452929_25453105_25454918_25455052_25456664_25456771_25457164_25457246_25460601_25460786_25463044_25463151_25468443_25468640_25469438_25469532_25471966_25472139_25480282_25480417_25481266_25481349_25482089_25482260_25483059_25483132_25485125_25485192_25486670_25486867_25487758_25487836_25493273_25493353_25494794_25494854_25496192_25496291_25506700
transcript_88880.known	chr8	+	1281	4	FSM	ENSMUSG00000031556.7	ENSMUST00000033961.7	1281	4	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_1	26.3185612575358	1703	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTGAGTATTTC	NA	False	NA	14	True	AATAAA	-14	NA	25507226	25513276	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_25507609_25508081_25508170_25510454_25510571_25512581
transcript_88881.known	chr8	+	727	3	FSM	ENSMUSG00000031556.7	ENSMUST00000210536.2	727	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	142	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGACCAAGTTTTTCACCCC	NA	False	NA	NA	False	NA	NA	NA	25507322	25512906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_25507609_25510454_25510571_25512581
transcript_88883.known	chr8	-	5176	12	FSM	ENSMUSG00000031557.17	ENSMUST00000064883.14	5176	12	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_11	35.6008635794598	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGTTGTGTGTTTTCCTG	9688	False	NA	NA	False	AATAAA	-19	NA	25592392	25529159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_25533055_25533640_25533719_25542375_25542440_25547309_25547381_25547748_25547818_25549149_25549297_25549849_25549991_25552390_25552489_25553953_25554003_25562014_25562072_25578357_25578522_25592049
transcript_88888.known	chr8	-	6471	11	FSM	ENSMUSG00000065954.12	ENSMUST00000084512.11	6471	11	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_10	23.6550206087418	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGGGGTGTGTTGTCTTCC	NA	False	NA	0	True	AATAAA	-21	NA	25691465	25644567	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_25649837_25651210_25651332_25654404_25654512_25655476_25655638_25657377_25657422_25657530_25657608_25659212_25659339_25661287_25661341_25665157_25665282_25667949_25668011_25691137
transcript_88892.known	chr8	-	375	5	FSM	ENSMUSG00000065954.12	ENSMUST00000210933.2	375	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	24.9937492185546	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCGTGTCTGTGGCCTGTG	NA	False	NA	NA	False	AATACA	-45	NA	25730917	25659309	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_25659339_25661287_25661341_25665157_25665282_25667949_25668011_25730809
transcript_88897.known	chr8	-	943	1	FSM	ENSMUSG00000065954.12	ENSMUST00000211218.2	943	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	25691418	25690475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_25690500_25691400
transcript_88902.known	chr8	+	432	1	FSM	ENSMUSG00000074412.5	ENSMUST00000098864.5	432	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6058	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTTGACAATGAAAACACA	NA	False	NA	NA	False	AAGAAA	-19	NA	25944288	25944720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_25944300_25944700
transcript_88905.nnic	chr8	+	744	3	NNC	ENSMUSG00000031565.19	novel	1903	13	NA	NA	-7424	911	at_least_one_novel_splicesite	TRUE	canonical	2	2	junction_2	3.5	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGTGCATCCCATTTTCA	NA	False	NA	NA	False	NA	NA	NA	26038208	26046656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_26038487_26045523_26045791_26046457
transcript_88906.known	chr8	-	947	5	FSM	ENSMUSG00000086134.2	ENSMUST00000126122.2	947	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATTTATTAAAACATACC	NA	False	NA	NA	False	AATAAA	-20	NA	26046099	26038676	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_26039062_26043534_26043687_26044494_26044593_26045453_26045649_26045982
transcript_88911.nic	chr8	+	1815	9	NIC	ENSMUSG00000054823.18	novel	2232	5	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	13.7152971167234	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGATCAGTGTAAAGCCTAA	NA	False	NA	NA	False	ATTAAA	-17	NA	26188518	26204719	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_26188646_26188760_26188964_26189938_26190052_26190478_26190749_26196551_26196669_26199089_26199232_26200699_26200807_26203384_26203587_26204185
transcript_88913.known	chr8	+	1539	8	FSM	ENSMUSG00000031570.18	ENSMUST00000139836.8	1539	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_6	28.6997120087947	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGTGTGTGTGTGAGT	NA	False	NA	17	True	AATAAA	-29	NA	26210090	26214914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_26210179_26210293_26210403_26210581_26210673_26211200_26211265_26211688_26211814_26212456_26212628_26213057_26213141_26214106
transcript_88914.known	chr8	+	1419	7	FSM	ENSMUSG00000031570.18	ENSMUST00000124764.8	1419	7	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	20.3141986469235	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGTGTGTGTGTGAGT	NA	False	NA	17	True	AATAAA	-29	NA	26210087	26214914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_26210179_26210293_26210363_26210581_26210673_26211200_26211265_26211688_26211814_26212456_26212628_26214106
transcript_88916.known	chr8	+	1377	7	FSM	ENSMUSG00000031570.18	ENSMUST00000145678.8	1377	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	28.0678740832924	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGTGTGTGTGTGAGT	NA	False	NA	17	True	AATAAA	-29	NA	26210087	26214914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_26210179_26210293_26210363_26210581_26210673_26211200_26211265_26211688_26211814_26212498_26212628_26214106
transcript_88918.known	chr8	+	1483	7	FSM	ENSMUSG00000031570.18	ENSMUST00000068916.16	1483	7	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	15.9269164205337	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGTGTGTGTGTGAGT	NA	False	NA	17	True	AATAAA	-29	NA	26210063	26214914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_26210179_26210293_26210403_26210581_26210673_26211200_26211265_26211688_26211814_26212456_26212628_26214106
transcript_88921.nic	chr8	+	2104	6	NIC	ENSMUSG00000031570.18	novel	1419	7	NA	NA	-18	0	intron_retention	FALSE	canonical	3	21	junction_2	21.0047613649858	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGTGTGTGTGTGAGT	NA	False	NA	17	True	AATAAA	-29	NA	26210045	26214914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_26210179_26210293_26210363_26210581_26210673_26211200_26211265_26211688_26212628_26214106
transcript_88922.known	chr8	+	2099	6	FSM	ENSMUSG00000031570.18	ENSMUST00000133117.8	2099	6	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	15.0545674132471	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGTGTGTGTGTGAGT	NA	False	NA	17	True	AATAAA	-29	NA	26210090	26214914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_26210179_26210293_26210403_26210581_26210673_26211200_26211265_26211688_26212628_26214106
transcript_88924.known	chr8	+	819	5	FSM	ENSMUSG00000031570.18	ENSMUST00000209843.2	819	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	23.4840371316348	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTGTGATTCCCACTTA	NA	False	NA	NA	False	NA	NA	NA	26210114	26212219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_26210179_26210293_26210363_26210581_26210673_26211200_26211265_26211688
transcript_88926.nic	chr8	+	563	5	ISM	ENSMUSG00000031570.18	ENSMUST00000068916.16	1483	7	-18	3060	-18	41	5prime_fragment	FALSE	canonical	3	39	junction_2	16.7107749670684	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCCGCTCTTTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	26210045	26211854	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_26210179_26210293_26210403_26210581_26210673_26211200_26211265_26211688
transcript_88934.known	chr8	-	4876	5	FSM	ENSMUSG00000037316.10	ENSMUST00000038498.10	4876	5	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_2	10.356157588604	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGTTTTCTCTCTAGCA	NA	False	NA	NA	False	AATAAA	-25	NA	26275315	26254565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_26258438_26259309_26259565_26261106_26261362_26267450_26267556_26274926
transcript_88941.nic	chr8	-	1460	4	ISM	ENSMUSG00000061313.11	ENSMUST00000211009.3	2509	13	-11	15636	-11	2211	5prime_fragment	FALSE	canonical	1	18	junction_3	21.2289111041209	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGTCTTAAATCACA	NA	False	NA	NA	False	NA	NA	NA	26244452	26239935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_26240820_26242126_26242318_26242974_26243201_26244293
transcript_88943.known	chr8	-	2266	16	FSM	ENSMUSG00000061313.11	ENSMUST00000211688.4	2266	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	17.3837727652991	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTTCCTTCTCAGCTAC	NA	False	NA	NA	False	NA	NA	NA	26244624	26217344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_26217391_26217656_26217765_26222989_26223150_26224742_26224914_26225035_26225139_26228241_26228335_26229489_26229613_26231313_26231382_26231627_26231837_26236844_26236981_26238564_26238655_26239753_26239875_26240729_26240820_26242126_26242318_26242974_26243201_26244293
transcript_88946.nic	chr8	-	875	2	ISM	ENSMUSG00000061313.11	ENSMUST00000211009.3	2509	13	-11	18185	-11	-9	5prime_fragment	FALSE	canonical	1	18	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGATGAGTGAAAAAAAAAAA	NA	False	NA	NA	False	ACTAAA	-41	NA	26244452	26242484	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_26243201_26244293
transcript_88947.nic	chr8	-	908	2	ISM	ENSMUSG00000061313.11	ENSMUST00000033975.9	4246	18	-98	27114	35	-11	5prime_fragment	FALSE	canonical	3	20	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGGATGAGTGAAAAAAAAA	NA	False	NA	NA	False	ACTAAA	-39	NA	26244406	26242486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_26243201_26244212
transcript_88948.known	chr8	-	2506	2	FSM	ENSMUSG00000037316.10	ENSMUST00000209948.2	2506	2	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	26275226	26265349	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_26267556_26274926
transcript_88949.known	chr8	-	1836	1	FSM	ENSMUSG00000061313.11	ENSMUST00000209419.3	1836	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACCTAGGA	NA	False	NA	NA	False	NA	NA	NA	26244311	26242475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_26242500_26244300
transcript_88950.known	chr8	-	4246	18	FSM	ENSMUSG00000061313.11	ENSMUST00000033975.9	4246	18	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_17	11.1150012413475	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGTGGCCTTATCTATC	NA	False	NA	-3	True	AATAAA	-22	NA	26244308	26215372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_26217391_26217656_26217765_26222989_26223150_26224742_26224914_26225035_26225139_26225771_26225928_26226033_26226118_26228238_26228335_26229489_26229613_26231313_26231382_26231627_26231837_26236844_26236981_26238564_26238655_26239753_26239875_26240729_26240820_26242126_26242318_26242974_26243201_26244212
transcript_88955.known	chr8	+	343	2	FSM	ENSMUSG00000037296.8	ENSMUST00000211168.2	343	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGTGCTGTCACCTGGT	8724	False	NA	NA	False	NA	NA	NA	26275599	26292152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_26275746_26291955
transcript_88957.known	chr8	-	2300	16	FSM	ENSMUSG00000031575.19	ENSMUST00000110609.8	2300	16	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_15	868.905733283728	1006	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGCTTGTATGGTACTTG	NA	False	NA	-22	True	AATAAA	-9	NA	26330485	26306913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26330396
transcript_88960.known	chr8	-	2337	16	FSM	ENSMUSG00000031575.19	ENSMUST00000110610.8	2337	16	0	0	0	0	multi-exon	TRUE	canonical	3	3119	junction_12	186.058007680998	5748	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTACTTGGCTTCACTGG	NA	False	NA	-12	True	AATAAA	-19	NA	26337722	26306903	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
transcript_88961.known	chr8	-	3307	16	FSM	ENSMUSG00000031575.19	ENSMUST00000068892.15	3307	16	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_15	813.355748325008	1215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCCAATGTTTGAATGAC	NA	False	NA	NA	False	NA	NA	NA	26330815	26306023	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26330609
transcript_88962.known	chr8	-	2234	15	FSM	ENSMUSG00000031575.19	ENSMUST00000166078.9	2234	15	0	0	0	0	multi-exon	FALSE	canonical	3	3119	junction_12	186.608342443171	1187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGCTTCACTGGAAGTGA	NA	False	NA	-6	True	AATAAA	-25	NA	26330110	26306897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039
transcript_88964.nnic	chr8	+	1639	9	NNC	ENSMUSG00000031576.17	novel	3536	27	NA	NA	-1415	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	2.72717802865893	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAAAGTTCATTGCTCTCT	NA	False	NA	NA	False	AATAAA	-20	NA	26400292	26427961	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_26400459_26400877_26400975_26403611_26403837_26408316_26408504_26409611_26409690_26411447_26411588_26422267_26422463_26424432_26424546_26427523
transcript_88967.known	chr8	+	1446	8	FSM	ENSMUSG00000031576.17	ENSMUST00000120653.8	1446	8	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	3.10365156891435	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAAAGTTCATTGCTCTCT	NA	False	NA	NA	False	AATAAA	-20	NA	26401707	26427961	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_26401778_26403611_26403837_26408316_26408504_26409611_26409690_26411447_26411588_26422267_26422463_26424432_26424546_26427523
transcript_88971.nnic	chr8	+	459	2	NNC	ENSMUSG00000031576.17	novel	3536	27	NA	NA	22925	-115	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTGCCAGTTGCTTAG	NA	False	NA	NA	False	AATAAA	-16	NA	26424644	26427846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_26424781_26427523
transcript_88972.nnic	chr8	+	575	2	NNC	ENSMUSG00000031576.17	novel	3536	27	NA	NA	22925	1	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAAGTTCATTGCTCTCTT	NA	False	NA	NA	False	AATAAA	-21	NA	26424644	26427962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_26424781_26427523
transcript_88980.known	chr8	-	3613	5	FSM	ENSMUSG00000037251.6	ENSMUST00000061850.5	3613	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_4	28.3681159050086	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAATGGAATTATTCAGC	NA	False	NA	NA	False	NA	NA	NA	26484161	26470631	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_26473673_26476273_26476561_26477522_26477669_26479677_26479770_26484114
transcript_88988.known	chr8	-	1930	9	FSM	ENSMUSG00000015994.11	ENSMUST00000016138.11	1930	9	0	0	0	0	multi-exon	FALSE	canonical	3	814	junction_5	99.1573875210516	747	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAATTGGTCCTGTTTTTCT	NA	False	NA	NA	False	ATTAAA	-5	NA	26505678	26488749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_26489593_26489796_26489969_26490997_26491061_26494443_26494593_26497214_26497342_26499692_26499798_26501117_26501233_26503497_26503584_26505408
transcript_88989.known	chr8	-	12836	22	FSM	ENSMUSG00000037234.18	ENSMUST00000037182.14	12836	22	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	10.5632744184703	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGAGCTCGTTTTTTCTGCT	NA	False	NA	NA	False	AATAAA	-22	NA	26609252	26511448	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_26522059_26524958_26525031_26525160_26525266_26528049_26528151_26529696_26529780_26534267_26534303_26538279_26538368_26549267_26549409_26551404_26551475_26557877_26557966_26558586_26558698_26560101_26560304_26561085_26561227_26562284_26562449_26563627_26563712_26564895_26564959_26572541_26572610_26578087_26578221_26583684_26583736_26585785_26585859_26600763_26600850_26608985
transcript_88993.nic	chr8	-	1718	5	ISM	ENSMUSG00000037234.18	ENSMUST00000037182.14	12836	22	-32	65563	-32	20	5prime_fragment	FALSE	canonical	3	40	junction_2	8.16624148553054	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGTAAGAATAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	26609284	26577011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_26578221_26583684_26583736_26585785_26585859_26600763_26600850_26608985
transcript_88994.nic	chr8	-	409	2	ISM	ENSMUSG00000037234.18	ENSMUST00000037182.14	12836	22	-32	89291	-32	-23708	5prime_fragment	FALSE	canonical	3	62	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGGTCTTACGTGTAAG	NA	False	NA	NA	False	AATAAA	-14	NA	26609284	26600739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_26600850_26608985
transcript_88999.known	chr8	+	1000	8	FSM	ENSMUSG00000013878.19	ENSMUST00000209707.2	1000	8	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	23.7469654344916	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTGTTTGGAATTCTG	NA	False	NA	NA	False	NA	NA	NA	26609415	26630995	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_26609629_26610472_26610592_26613874_26614016_26615931_26616008_26619074_26619184_26625656_26625731_26629007_26629119_26630838
transcript_89012.known	chr8	+	1026	7	FSM	ENSMUSG00000013878.19	ENSMUST00000153528.8	1026	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	26.5560204515327	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAAAGGATCCATGGCA	NA	False	NA	NA	False	TATAAA	-4	NA	26609410	26631152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_26609629_26610467_26610592_26615931_26616008_26619074_26619184_26625656_26625731_26629007_26629119_26630838
transcript_89015.known	chr8	+	966	5	FSM	ENSMUSG00000013878.19	ENSMUST00000110575.8	966	5	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_2	16.3152535990097	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	26609503	26619574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_26609629_26610467_26610592_26613874_26614016_26615931_26616008_26619074
transcript_89017.known	chr8	+	2295	3	FSM	ENSMUSG00000037214.13	ENSMUST00000036807.13	2295	3	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	13	579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGGCCCTGCTTTTTT	NA	False	NA	7	True	ATTAAA	-18	NA	26648168	26654179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_26648550_26650802_26650999_26652461
transcript_89020.known	chr8	+	582	2	FSM	ENSMUSG00000037214.13	ENSMUST00000127536.2	582	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAGAAAAATAAAAATACTC	NA	False	NA	7	True	NA	NA	NA	26648282	26649440	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_26648550_26649125
transcript_89022.nnic	chr8	-	462	3	Antisense	novelGene_ENSMUSG00000110338.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	1.5	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATGGAAGGACAATCACTA	6890	False	NA	NA	False	ATTAAA	-15	NA	27135454	27127817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr8_-_27128018_27128371_27128546_27135366
transcript_89026.known	chr8	-	568	3	FSM	ENSMUSG00000100335.3	ENSMUST00000189978.2	568	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCAACCTCTCTCTCTGT	NA	False	NA	NA	False	AATACA	-19	NA	27314451	27304620	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_27304836_27305190_27305334_27314241
transcript_89033.known	chr8	+	4838	12	FSM	ENSMUSG00000031483.9	ENSMUST00000033873.9	4838	12	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_9	30.3309568287708	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGTTTTTCATTGTTGT	NA	False	NA	NA	False	NA	NA	NA	27513826	27530356	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_27513935_27515084_27515207_27517196_27517279_27518926_27518974_27519366_27519429_27519571_27519698_27521725_27521800_27521954_27522014_27522261_27522354_27523413_27523504_27526041_27526122_27526460
transcript_89040.nic	chr8	+	820	6	ISM	ENSMUSG00000031483.9	ENSMUST00000033873.9	4838	12	-13	10399	-13	736	5prime_fragment	FALSE	canonical	3	289	junction_1	24.4916312237466	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACATCCATACCCATACCCA	NA	False	NA	NA	False	NA	NA	NA	27513813	27519957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_27513935_27515084_27515207_27517196_27517279_27518926_27518974_27519366_27519429_27519571
transcript_89044.nnic	chr8	+	2586	9	NNC	ENSMUSG00000031485.16	novel	3603	8	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	86.0112637972493	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGCGTGTGGGTGTTT	NA	False	NA	25	True	AATAAA	-17	NA	27532572	27546160	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_27532742_27535055_27535164_27535425_27535462_27535951_27536028_27539201_27539337_27541286_27541430_27542263_27542363_27543313_27544055_27545081
transcript_89046.known	chr8	+	3603	8	FSM	ENSMUSG00000031485.16	ENSMUST00000033875.10	3603	8	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_4	11.5881713089561	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGCGTGTGGGTGTTT	NA	False	NA	25	True	AATAAA	-17	NA	27532582	27546160	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_27532742_27535055_27535164_27535425_27535462_27535951_27536028_27539201_27539337_27541286_27541430_27542263_27542363_27543313
transcript_89059.known	chr8	+	5767	5	FSM	ENSMUSG00000031485.16	ENSMUST00000209525.2	5767	5	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_4	15.0416089564913	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGGTGTGATGAGTGAAT	NA	False	NA	13	True	ATTAAA	-15	NA	27532588	27544595	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_27532742_27535055_27535164_27535425_27535462_27535951_27536028_27539201
transcript_89061.known	chr8	+	3954	4	FSM	ENSMUSG00000031485.16	ENSMUST00000209856.2	3954	4	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_1	9.80929264637477	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAATGCTGCTGTA	NA	False	NA	NA	False	NA	NA	NA	27532623	27539643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_27532742_27535055_27535164_27535425_27535462_27535951
transcript_89063.nic	chr8	+	468	2	ISM	ENSMUSG00000031485.16	ENSMUST00000211490.2	504	4	-160	824	-10	214	5prime_fragment	FALSE	canonical	3	252	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAAAAAAGAACTGTTG	NA	False	NA	NA	False	NA	NA	NA	27532572	27535354	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_27532742_27535055
transcript_89064.known	chr8	-	666	1	FSM	ENSMUSG00000091154.3	ENSMUST00000178990.2	666	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCGTTCCTTTCCTTTTTC	NA	False	NA	NA	False	ATTAAA	-19	NA	27533070	27532404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_27532400_27533100
transcript_89065.known	chr8	+	1862	1	FSM	ENSMUSG00000031485.16	ENSMUST00000211281.2	1862	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAAAAAAGGAGAGTG	NA	False	NA	NA	False	NA	NA	NA	27532852	27534714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_27532900_27534700
transcript_89066.known	chr8	+	2143	8	FSM	ENSMUSG00000031485.16	ENSMUST00000211393.2	2143	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_7	90.3846654864753	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTGGTGTGATGAGTGA	NA	False	NA	11	True	ATTAAA	-13	NA	27532649	27544593	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_27532742_27535055_27535164_27535425_27535462_27535951_27536028_27539201_27539337_27541286_27541430_27542263_27542363_27543139
transcript_89070.known	chr8	-	1899	4	FSM	ENSMUSG00000031487.6	ENSMUST00000033877.6	1899	4	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	8.9938250421547	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAACCAGAGCTTTTAAA	NA	False	NA	-26	True	ATTAAA	-35	NA	27618708	27613391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_27614649_27615847_27616170_27617487_27617548_27618448
transcript_89071.known	chr8	-	620	4	FSM	ENSMUSG00000031487.6	ENSMUST00000210230.2	620	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	38.1255236758206	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCATCCCTTGCCCATCAT	NA	False	NA	NA	False	NA	NA	NA	27618641	27614527	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_27614649_27615847_27616170_27617487_27617548_27618524
transcript_89072.known	chr8	-	790	4	FSM	ENSMUSG00000031487.6	ENSMUST00000211151.2	790	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	39.5080863734108	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCAAGCGTCCCCGTCCG	NA	False	NA	NA	False	NA	NA	NA	27618651	27614639	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_27614649_27615847_27616170_27617487_27617548_27618252
transcript_89076.nic	chr8	-	848	3	ISM	ENSMUSG00000031487.6	ENSMUST00000033877.6	1899	4	-13	2263	-13	0	5prime_fragment	FALSE	canonical	3	93	junction_2	1	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAAAGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	27618721	27615654	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_27616170_27617487_27617548_27618448
transcript_89078.known	chr8	-	1688	2	FSM	ENSMUSG00000031487.6	ENSMUST00000210552.2	1688	2	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAAAGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	27618660	27615654	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_27616170_27617487
transcript_89079.known	chr8	-	3217	5	FSM	ENSMUSG00000031488.15	ENSMUST00000033878.14	3217	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	8.6421930087218	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGAGAGTCGGTCTCTC	NA	False	NA	NA	False	TTTAAA	-4	NA	27664674	27631985	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_27633423_27640722_27640832_27644173_27644964_27646254_27646698_27664236
transcript_89080.known	chr8	-	7965	6	FSM	ENSMUSG00000031488.15	ENSMUST00000054212.7	7965	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	30.9283041888817	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGTGTCTGTACTTCAG	NA	False	NA	NA	False	AATAAA	-22	NA	27664674	27628800	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_27633423_27640722_27640832_27641624_27643188_27644173_27644964_27646254_27646698_27664236
transcript_89081.known	chr8	-	2321	2	FSM	ENSMUSG00000031488.15	ENSMUST00000211646.2	2321	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTACTAGTTATAGCTGC	NA	False	NA	NA	False	AATAAA	-26	NA	27664669	27655222	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_27657111_27664236
transcript_89086.nic	chr8	-	1434	10	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_9	28.2016547977833	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTGCTATGTTCTCCTT	NA	False	NA	-7	True	AATAAA	-17	NA	27713877	27687486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_27687710_27687955_27688099_27688420_27688587_27689294_27689446_27689537_27689631_27689865_27689976_27690260_27690373_27690749_27690932_27692399_27692492_27713715
transcript_89087.nic	chr8	-	1653	10	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	-52	0	combination_of_known_junctions	FALSE	canonical	3	68	junction_6	20.0831604418561	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTGCTATGTTCTCCTT	NA	False	NA	-7	True	AATAAA	-17	NA	27713908	27687486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_27687710_27687955_27688099_27688420_27688587_27689294_27689446_27689537_27689631_27689865_27689976_27690260_27690373_27690749_27690932_27692399_27692680_27713715
transcript_89109.known	chr8	-	1356	9	FSM	ENSMUSG00000039720.8	ENSMUST00000038174.8	1356	9	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_6	19.421315609402	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTGCTATGTTCTCCTT	NA	False	NA	-7	True	AATAAA	-17	NA	27692575	27687486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_27687710_27687955_27688099_27688420_27688587_27689294_27689446_27689537_27689631_27689865_27689976_27690260_27690373_27690749_27690932_27692399
transcript_8911.known	chr10	+	838	7	FSM	ENSMUSG00000020056.17	ENSMUST00000182183.8	838	7	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_4	103.215658803411	3259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATATGGTTTGTTGACCAA	NA	False	NA	13	True	AATAAA	-16	NA	88037013	88081868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_88037155_88037673_88037773_88049508_88049575_88051828_88051937_88055114_88055223_88070255_88070321_88081617
transcript_89110.known	chr8	-	397	2	FSM	ENSMUSG00000039720.8	ENSMUST00000209299.2	397	2	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGTTGTTCCTGGCCTAC	NA	False	NA	NA	False	ACTAAA	-27	NA	27713856	27692423	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_27692680_27713715
transcript_89121.nnic	chr8	-	2100	3	NNC	ENSMUSG00000031489.16	novel	2795	4	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_2	15.5	55	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCCCCTGCTCGCCTT	NA	False	NA	-12	True	AATAAA	-15	NA	27718606	27715803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_27716411_27716753_27716925_27717284
transcript_89128.nic	chr8	-	2187	3	NIC	ENSMUSG00000031489.16	novel	1864	3	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_2	26.5	56	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCCCCTGCTCGCCTT	NA	False	NA	-12	True	AATAAA	-15	NA	27718606	27715803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_27716498_27716753_27716925_27717284
transcript_89146.known	chr8	+	1997	3	FSM	ENSMUSG00000031490.7	ENSMUST00000033880.7	1997	3	0	0	0	0	multi-exon	FALSE	canonical	3	14377	junction_1	319.5	35499	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGATTGGTTCCCAGTGG	NA	False	NA	15	True	NA	NA	NA	27750356	27766702	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_27750579_27763350_27763531_27765107
transcript_89168.known	chr8	+	1524	3	FSM	ENSMUSG00000039661.15	ENSMUST00000161713.2	1524	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTTGGCGTTATTAACA	NA	False	NA	NA	False	AATAAA	-19	NA	31581677	31587074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_31582129_31584115_31584331_31586216
transcript_89169.known	chr8	+	1726	6	FSM	ENSMUSG00000039328.12	ENSMUST00000217278.2	1726	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	3.55527776692624	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAATTAAATTTAATAACA	NA	False	NA	-23	True	TTTAAA	-1	NA	31601857	31619661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_31602201_31608458_31608616_31614879_31614926_31615193_31615236_31618279_31618363_31618606
transcript_89170.known	chr8	-	104	1	FSM	ENSMUSG00000088252.3	ENSMUST00000157627.3	104	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTTAGGAGGATCCTCC	NA	False	NA	-12	True	NA	NA	NA	31639995	31639891	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_31639900_31640000
transcript_89174.known	chr8	+	3133	7	FSM	ENSMUSG00000031577.11	ENSMUST00000209851.2	3133	7	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_5	19.2476549798208	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAAAAAAAAAATTTGG	NA	False	NA	NA	False	NA	NA	NA	31640342	31651082	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_31641528_31643536_31643724_31644241_31644335_31645541_31645730_31645805_31645950_31648620_31648784_31649909
transcript_89180.known	chr8	-	1902	10	FSM	ENSMUSG00000031578.6	ENSMUST00000033983.6	1902	10	0	0	0	0	multi-exon	FALSE	canonical	3	742	junction_2	38.8285245790727	2060	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGGTCTTGAGAATTCTG	NA	False	NA	-2	True	TATAAA	-20	NA	31658792	31649490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_31650606_31650786_31650853_31651749_31651864_31653058_31653134_31654745_31654801_31656089_31656242_31656401_31656467_31656550_31656661_31656737_31656788_31658692
transcript_89182.known	chr8	+	3527	6	FSM	ENSMUSG00000046152.17	ENSMUST00000161502.2	3527	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	15.0519101777814	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGCTCAGTGCTTTCATG	NA	False	NA	NA	False	CATAAA	-11	NA	31677374	31751766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_31677491_31678329_31678435_31684981_31685318_31691237_31691533_31725622_31726459_31749927
transcript_89185.known	chr8	+	2962	4	FSM	ENSMUSG00000046152.17	ENSMUST00000161788.8	2962	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	13.29995822884	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCACTGTCGCAGACTCTC	NA	False	NA	6	True	AATAAA	-16	NA	31677359	31727822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_31677491_31684981_31685318_31691237_31691533_31725622
transcript_89186.known	chr8	+	2327	4	FSM	ENSMUSG00000046152.17	ENSMUST00000110527.9	2327	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	19.3964487013015	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTTTCAAGAAATGTATT	NA	False	NA	2	True	AATAAA	-15	NA	31677370	31751503	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_31677491_31684981_31685318_31691237_31691533_31749927
transcript_89188.known	chr8	+	3183	5	FSM	ENSMUSG00000046152.17	ENSMUST00000066173.12	3183	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	11.5758369027902	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAATGTATTCTTTGGAG	NA	False	NA	10	True	AATAAA	-23	NA	31677358	31751511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_31677491_31684981_31685318_31691237_31691533_31725622_31726459_31749927
transcript_89189.known	chr8	-	1625	7	FSM	ENSMUSG00000062991.10	ENSMUST00000238826.2	1625	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.86338998124982	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCGCATGTAGGCATAAAG	NA	False	NA	NA	False	AATAAA	-42	NA	32499569	32327195	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_32327757_32339337_32339468_32437011_32437063_32439944_32439996_32448539_32448662_32458035_32458214_32499037
transcript_89197.known	chr8	+	1469	7	FSM	ENSMUSG00000009630.11	ENSMUST00000009774.11	1469	7	0	0	0	0	multi-exon	FALSE	canonical	3	909	junction_3	33.4398298772919	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTCTTGACTGGTTAAG	8865	False	NA	NA	False	NA	NA	NA	34089652	34109469	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_34090047_34100682_34100893_34101775_34101950_34105477_34105568_34105693_34105856_34107054_34107174_34109149
transcript_89202.known	chr8	-	2808	8	FSM	ENSMUSG00000052906.8	ENSMUST00000095349.6	2808	8	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_7	19.9335631229219	426	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGAAGTCAGCTTGTGAAT	4670	False	NA	NA	False	AATAAA	-21	NA	34131995	34109613	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_34111729_34113189_34113265_34116351_34116394_34119264_34119403_34123529_34123656_34125316_34125388_34128507_34128631_34131877
transcript_8921.known	chr10	+	521	6	FSM	ENSMUSG00000020056.17	ENSMUST00000182619.2	521	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	169.707513092379	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTTGAGTGCCGAGAAGT	NA	False	NA	NA	False	NA	NA	NA	88037124	88061003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_88037155_88037673_88037773_88049508_88049575_88051828_88051937_88055114_88055223_88060893
transcript_89211.known	chr8	+	2673	13	FSM	ENSMUSG00000031584.17	ENSMUST00000033992.9	2673	13	0	0	0	0	multi-exon	FALSE	canonical	3	1474	junction_4	147.314360580811	221	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGTCAGTGTATTTTC	402	False	NA	14	True	TATAAA	-17	NA	34143265	34188191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_34143808_34159180_34159208_34159920_34160010_34161550_34161621_34164114_34164263_34170290_34170346_34171492_34171593_34172620_34172708_34175571_34175731_34179368_34179481_34183826_34183959_34185026_34185161_34187173
transcript_89217.known	chr8	+	1634	8	FSM	ENSMUSG00000031585.14	ENSMUST00000170705.8	1634	8	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_1	317.681974204855	1333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATGTTAATGCTTTGTT	5025	False	NA	9	True	AATAAA	-13	NA	34221860	34267192	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_34222017_34225761_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971_34266088_34266480
transcript_89221.known	chr8	+	1664	8	FSM	ENSMUSG00000031585.14	ENSMUST00000171010.8	1664	8	0	0	0	0	multi-exon	FALSE	canonical	2	96	junction_1	434.890697034723	719	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGCTTTGTTTTAAAAAGC	5531	False	NA	18	True	AATAAA	-22	NA	34222366	34267201	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_34222544_34225761_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971_34266088_34266480
transcript_89230.known	chr8	+	1566	8	FSM	ENSMUSG00000031585.14	ENSMUST00000167264.8	1566	8	0	0	0	0	multi-exon	FALSE	canonical	3	804	junction_1	195.585463338633	2433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATGTTAATGCTTTGTT	5234	False	NA	9	True	AATAAA	-13	NA	34222069	34267192	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_34222158_34225761_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971_34266088_34266480
transcript_89231.known	chr8	+	471	3	FSM	ENSMUSG00000031585.14	ENSMUST00000186200.2	471	3	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	654	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTTTGTTTTATTTTAT	NA	False	NA	-39	True	NA	NA	NA	34255029	34266806	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_34255059_34265971_34266088_34266480
transcript_89237.nnic	chr8	-	1294	9	NNC	ENSMUSG00000031586.18	novel	2547	9	NA	NA	15020	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_8	592.177641738524	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAATTTTAAGAAATGTGT	NA	False	NA	NA	False	AATAAA	-24	NA	34404284	34274093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_34274215_34279419_34279524_34285109_34285179_34296744_34296879_34324331_34324483_34353013_34353077_34354360_34354400_34356354_34356433_34403749
transcript_89238.nnic	chr8	-	907	9	NNC	ENSMUSG00000031586.18	novel	2547	9	NA	NA	-74	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_8	592.596603411629	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAATTTTAAGAAATGTGT	NA	False	NA	NA	False	AATAAA	-24	NA	34419494	34274093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_34274215_34279419_34279524_34285109_34285179_34296744_34296879_34324331_34324483_34353013_34353077_34354360_34354400_34356354_34356433_34419346
transcript_89239.known	chr8	-	1385	9	FSM	ENSMUSG00000031586.18	ENSMUST00000182987.8	1385	9	0	0	0	0	multi-exon	FALSE	canonical	3	376	junction_1	473.977962963469	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTCCCTCTGCCTGGCCC	NA	False	NA	NA	False	NA	NA	NA	34419844	34273808	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_34274215_34279419_34279524_34285109_34285179_34296744_34296879_34324331_34324483_34353013_34353077_34354360_34354400_34356354_34356433_34419503
transcript_89241.nnic	chr8	-	1192	8	NNC	ENSMUSG00000031586.18	novel	2466	8	NA	NA	15020	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_7	546.563400732622	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTTTAAGAAATGTGTTA	NA	False	NA	NA	False	AATAAA	-26	NA	34404284	34274091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_34274215_34285109_34285179_34296744_34296879_34324331_34324483_34353013_34353077_34354360_34354400_34356354_34356433_34403749
transcript_89243.known	chr8	-	2466	8	FSM	ENSMUSG00000031586.18	ENSMUST00000053251.12	2466	8	0	0	0	0	multi-exon	FALSE	canonical	3	696	junction_1	308.820996959833	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGATTTGTCTGACAACTT	NA	False	NA	NA	False	AATAAA	-19	NA	34419891	34272670	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_34274215_34285109_34285179_34296744_34296879_34324331_34324483_34353013_34353077_34354360_34354400_34356354_34356433_34419503
transcript_89246.known	chr8	-	2375	8	FSM	ENSMUSG00000031586.18	ENSMUST00000033994.15	2375	8	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_3	606.753118606551	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACATGATTTGTCTGACA	NA	False	NA	NA	False	AATAAA	-15	NA	34419834	34272674	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_34274215_34279419_34279524_34285109_34285179_34324331_34324483_34353013_34353077_34354360_34354400_34356354_34356433_34419503
transcript_89253.known	chr8	-	1039	7	FSM	ENSMUSG00000031586.18	ENSMUST00000033995.14	1039	7	0	0	0	0	multi-exon	FALSE	canonical	3	456	junction_1	404.856524654791	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTACAGCGTTTTTGGTT	NA	False	NA	-7	True	AATAAA	-36	NA	34419833	34293966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_34294211_34296744_34296879_34324331_34324483_34353013_34353077_34354360_34354400_34356354_34356433_34419503
transcript_89259.nnic	chr8	-	586	5	NNC	ENSMUSG00000031586.18	novel	643	6	NA	NA	14559	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	401.900796217176	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAATTTTAAGAAATGTGT	NA	False	NA	NA	False	AATAAA	-24	NA	34319140	34274093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_34274215_34279419_34279524_34285109_34285179_34296744_34296879_34318982
transcript_89262.nnic	chr8	-	484	4	NNC	ENSMUSG00000031586.18	novel	643	6	NA	NA	14559	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	459.855291248115	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTTTAAGAAATGTGTTA	NA	False	NA	NA	False	AATAAA	-26	NA	34319140	34274091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_34274215_34285109_34285179_34296744_34296879_34318982
transcript_89271.known	chr8	-	549	5	FSM	ENSMUSG00000031586.18	ENSMUST00000183336.8	549	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	198.759905413542	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAGAAATGTGTTATTT	NA	False	NA	NA	False	AATAAA	-29	NA	34296864	34274088	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_34274215_34279419_34279524_34285109_34285179_34286901_34287032_34296744
transcript_89278.known	chr8	-	934	7	FSM	ENSMUSG00000031516.12	ENSMUST00000118811.8	934	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	147.498870052169	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAACAACCGCTATAATTTA	NA	False	NA	NA	False	NA	NA	NA	34575006	34557791	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_34557997_34559664_34559808_34560782_34560831_34562037_34562127_34564342_34564449_34573495_34573561_34574728
transcript_89280.known	chr8	-	736	1	FSM	ENSMUSG00000063412.5	ENSMUST00000080152.5	736	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16632	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTGTATTTTCAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	34578891	34578155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_34578200_34578900
transcript_89283.known	chr8	+	1860	6	FSM	ENSMUSG00000031532.8	ENSMUST00000033933.8	1860	6	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_1	37.2633868562695	314	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTCTTGTTCTTTGTACT	NA	False	NA	9	True	AATAAA	-16	NA	34621729	34637975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_34621991_34628348_34628528_34632294_34632695_34634872_34635012_34635610_34635766_34637249
transcript_89289.known	chr8	+	418	4	FSM	ENSMUSG00000100605.2	ENSMUST00000188318.2	418	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	5.71547606649408	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCACTTACTCTTTCTTTT	NA	False	NA	NA	False	ATTAAA	-41	NA	34684012	34693299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_34684111_34688020_34688119_34691015_34691123_34693184
transcript_89290.nnic	chr8	+	528	4	NNC	ENSMUSG00000100605.2	novel	418	4	NA	NA	-83	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	9.41629792788369	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCACTTACTCTTTCTTTT	NA	False	NA	NA	False	ATTAAA	-41	NA	34683929	34693299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_34684111_34687993_34688119_34691015_34691123_34693184
transcript_89294.nnic	chr8	+	793	3	NNC	ENSMUSG00000054247.7	novel	834	2	NA	NA	500	6373	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	3	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTGTTTGTTTTGTTT	NA	False	NA	NA	False	CATAAA	-21	NA	35434086	35441254	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_35434214_35434668_35434900_35440819
transcript_89295.known	chr8	+	834	2	FSM	ENSMUSG00000054247.7	ENSMUST00000210951.2	834	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTCTCAAGATCTGGATC	NA	False	NA	NA	False	NA	NA	NA	35433586	35434875	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_35434214_35434668
transcript_89297.known	chr8	+	4349	2	FSM	ENSMUSG00000046794.10	ENSMUST00000210337.2	4349	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAGAAAATGAAAACTAT	NA	False	NA	NA	False	NA	NA	NA	35842892	35855283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_35843096_35851137
transcript_89298.known	chr8	+	4386	3	FSM	ENSMUSG00000046794.10	ENSMUST00000211648.2	4386	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	13	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAATGAAAACTATTCCTT	NA	False	NA	NA	False	NA	NA	NA	35842911	35855288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_35842960_35843720_35843908_35851137
transcript_89299.known	chr8	+	4221	2	FSM	ENSMUSG00000046794.10	ENSMUST00000070481.8	4221	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACTATTCCTTCTATT	NA	False	NA	NA	False	NA	NA	NA	35842894	35855293	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_35842960_35851137
transcript_89300.known	chr8	-	5079	7	FSM	ENSMUSG00000031527.8	ENSMUST00000033927.8	5079	7	0	0	0	0	multi-exon	FALSE	canonical	3	346	junction_2	28.274939827031	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGCCTGCGTTCTGTG	NA	False	NA	NA	False	NA	NA	NA	35962687	35932406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_35936525_35941550_35941666_35943612_35943723_35945713_35945798_35949669_35949881_35958354_35958534_35962425
transcript_89303.known	chr8	+	6408	3	FSM	ENSMUSG00000070056.7	ENSMUST00000037666.6	6408	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	1	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTGGTAGCTCCAGCATT	NA	False	NA	NA	False	NA	NA	NA	36054951	36146603	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_36058513_36131821_36131949_36143883
transcript_89307.known	chr8	+	381	1	FSM	ENSMUSG00000098181.2	ENSMUST00000182321.2	381	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAAATTTTGGCGGAAA	NA	False	NA	NA	False	AAGAAA	-1	NA	36492906	36493287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_36492900_36493300
transcript_89308.nnic	chr8	+	688	4	NNC	ENSMUSG00000109704.2	novel	1488	4	NA	NA	-204	-431	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.24721912892465	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTTCGCCATCTACTC	NA	False	NA	NA	False	NA	NA	NA	36622959	36627757	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_36623247_36623480_36623563_36626900_36627001_36627538
transcript_89309.nic	chr8	+	807	4	NIC	ENSMUSG00000109704.2	novel	1488	4	NA	NA	-204	-431	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	1.24721912892465	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTTCGCCATCTACTC	NA	False	NA	NA	False	NA	NA	NA	36622959	36627757	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_36623366_36623480_36623563_36626900_36627001_36627538
transcript_89310.known	chr8	+	1405	3	FSM	ENSMUSG00000109704.2	ENSMUST00000211253.2	1405	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGCCTTGGTCATGGTGT	NA	False	NA	NA	False	NA	NA	NA	36626632	36628742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_36626734_36626900_36627001_36627538
transcript_89314.nic	chr8	-	1892	5	ISM	ENSMUSG00000031523.17	ENSMUST00000033923.14	6159	14	-12	15940	-12	9540	5prime_fragment	TRUE	canonical	3	26	junction_3	8.33666600026653	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAGATACACCTGGATG	NA	False	NA	NA	False	NA	NA	NA	37081109	37050844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_37052122_37053829_37053894_37060530_37060613_37066522_37066595_37080712
transcript_89316.known	chr8	-	616	3	FSM	ENSMUSG00000031523.17	ENSMUST00000145245.2	616	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	11.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGTAAAAAAAAAAAATGATT	NA	False	NA	NA	False	NA	NA	NA	37081028	37060384	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_37060613_37066522_37066595_37080712
transcript_89317.known	chr8	+	1930	1	FSM	ENSMUSG00000074384.5	ENSMUST00000098825.5	1930	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAGTTTTGCTTATTCAAC	NA	False	NA	NA	False	NA	NA	NA	37460757	37462687	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_37460800_37462700
transcript_89318.known	chr8	+	2811	11	FSM	ENSMUSG00000118664.1	ENSMUST00000239509.1	2811	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	62.7792959501777	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAACACGTCAAATCTCA	NA	False	NA	NA	False	ATTAAA	-9	NA	39472998	39619367	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_39473355_39513668_39513839_39530344_39530463_39534775_39534917_39538529_39538671_39564078_39564169_39593682_39593747_39597896_39597972_39610300_39610392_39614047_39614112_39617866
transcript_8932.known	chr10	-	2807	7	FSM	ENSMUSG00000020057.3	ENSMUST00000020249.2	2807	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.21335164821342	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTTGTCTCGGTTGCATT	NA	False	NA	NA	False	AATAAA	-18	NA	88192937	88158665	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_88160648_88161195_88161289_88164944_88165004_88172672_88172851_88176381_88176525_88180505_88180574_88192653
transcript_89321.known	chr8	+	2747	10	FSM	ENSMUSG00000118664.1	ENSMUST00000239508.1	2747	10	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	15.2153269054433	683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAACACGTCAAATCTCA	NA	False	NA	NA	False	ATTAAA	-9	NA	39472998	39619367	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_39473355_39513668_39513839_39530344_39530463_39534775_39534917_39538529_39538671_39564078_39564169_39593682_39593747_39597896_39597972_39610300_39610392_39617866
transcript_89332.known	chr8	+	2667	5	FSM	ENSMUSG00000118664.1	ENSMUST00000239511.1	2667	5	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	14.5322916293336	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAAAAAAAACCTTC	NA	False	NA	NA	False	TTTAAA	-31	NA	39473063	39540476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_39473355_39513668_39513839_39530344_39530463_39534775_39534917_39538529
transcript_89335.known	chr8	+	3381	13	FSM	ENSMUSG00000039470.16	ENSMUST00000049389.11	3381	13	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_3	8.82664841387841	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCCGTCTCCATCCAGTT	1220	False	NA	2	True	AATAAA	-26	NA	40876855	40938766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_40877211_40898818_40898846_40900091_40900187_40907538_40907660_40909071_40909142_40909703_40909737_40915128_40915250_40917198_40917332_40920469_40920597_40920951_40921045_40925953_40926067_40927775_40927849_40936746
transcript_89341.known	chr8	+	6002	12	FSM	ENSMUSG00000031600.12	ENSMUST00000098817.4	6002	12	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_7	12.6869491086687	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGCCTTGGTTGTGGTGTC	NA	False	NA	12	True	NA	NA	NA	40964823	41003798	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_40965275_40979967_40980043_40981358_40981474_40982149_40982251_40989910_40990137_40992350_40992422_40993719_40993848_40993929_40993989_40994065_40994135_40996850_40996995_40997984_40998066_40999316
transcript_89348.nnic	chr8	-	2668	7	NNC	ENSMUSG00000031601.17	novel	2615	7	NA	NA	-53	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	195.288177374418	92	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTGTGACTGATGGCTT	NA	False	NA	-1	True	AATAAA	-23	NA	40964398	40945580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_40947157_40948845_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964130
transcript_89349.known	chr8	-	2615	7	FSM	ENSMUSG00000031601.17	ENSMUST00000034012.10	2615	7	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_2	67.4388612003495	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTGTGACTGATGGCTT	NA	False	NA	-1	True	AATAAA	-23	NA	40964795	40945580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_40947157_40948845_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964580
transcript_8935.known	chr10	+	1139	9	FSM	ENSMUSG00000020059.10	ENSMUST00000020252.10	1139	9	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_4	7.47391296443837	1019	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTTGGTTTCAGTATAT	NA	False	NA	3	True	AATAAA	-15	NA	88295430	88309097	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_88295575_88298322_88298466_88299224_88299289_88299697_88299733_88302300_88302419_88303144_88303245_88305407_88305507_88308537_88308643_88308766
transcript_89355.known	chr8	-	2461	6	FSM	ENSMUSG00000031601.17	ENSMUST00000135269.8	2461	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	206.645203186524	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTATATGGTTGTGACTG	NA	False	NA	-8	True	AATAAA	-16	NA	40964759	40945587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_40947157_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964580
transcript_89360.nnic	chr8	-	811	3	NNC	ENSMUSG00000031601.17	novel	726	3	NA	NA	-53	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	310	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGACTTTAGTTATAGAGA	NA	False	NA	-4	True	AATAAA	-15	NA	40964398	40960358	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_40960690_40963055_40963268_40964130
transcript_89361.known	chr8	-	726	3	FSM	ENSMUSG00000031601.17	ENSMUST00000146280.2	726	3	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_2	66.5	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGACTTTAGTTATAGAGA	NA	False	NA	-4	True	AATAAA	-15	NA	40964763	40960358	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_40960690_40963055_40963268_40964580
transcript_89362.known	chr8	+	879	3	FSM	ENSMUSG00000031600.12	ENSMUST00000238628.2	879	3	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_2	1	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTCTAGCTAATTTTTAA	NA	False	NA	13	True	ATTAAA	-13	NA	40996464	40999584	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_40996995_40997984_40998066_40999316
transcript_89364.known	chr8	-	2488	14	FSM	ENSMUSG00000039431.17	ENSMUST00000048898.17	2488	14	0	0	0	0	multi-exon	TRUE	canonical	3	263	junction_13	15.5985130530912	273	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAATGTAATCATTTTAT	NA	False	NA	38	True	AATAAA	-23	NA	41087819	41004141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_41004955_41007311_41007439_41008816_41008958_41011196_41011398_41013897_41013948_41015610_41015737_41017000_41017111_41034455_41034589_41040090_41040226_41043452_41043582_41050325_41050484_41059801_41059965_41061936_41062060_41087740
transcript_89365.known	chr8	-	151	1	FSM	ENSMUSG00000109658.2	ENSMUST00000210267.2	151	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	847	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGGATGCTGGGTTAA	NA	False	NA	NA	False	NA	NA	NA	41136686	41136535	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_41136500_41136700
transcript_89367.known	chr8	+	1548	6	FSM	ENSMUSG00000031595.10	ENSMUST00000034004.10	1548	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.632455532033676	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTAAGTACTTGTGTCATT	4409	False	NA	NA	False	ATTAAA	-33	NA	41379269	41443822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_41379463_41391126_41391425_41429987_41430140_41438570_41438865_41441841_41441982_41443351
transcript_89368.known	chr8	-	3964	10	FSM	ENSMUSG00000045636.17	ENSMUST00000051379.14	3964	10	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_9	37.6133677314165	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATGCAGTTATTTTTGAA	NA	False	NA	NA	False	ATTAAA	-20	NA	41494903	41444088	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_41446671_41447584_41447683_41451383_41451501_41452472_41452569_41452679_41452754_41453797_41453904_41455341_41455557_41468424_41468492_41475416_41475632_41494509
transcript_89375.known	chr8	-	336	2	FSM	ENSMUSG00000045636.17	ENSMUST00000155055.2	336	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGAGTCACGGGGATTGG	NA	False	NA	NA	False	NA	NA	NA	41586755	41537599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_41537878_41586697
transcript_89376.known	chr8	-	1325	2	FSM	ENSMUSG00000045636.17	ENSMUST00000135194.2	1325	2	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGACAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	41453242	41451806	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_41452569_41452679
transcript_89377.nnic	chr8	-	1208	8	NNC	ENSMUSG00000031594.10	novel	1120	8	NA	NA	-2816	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	5.56593135393662	67	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATGGCCATGGTAATTGT	NA	False	NA	NA	False	AATAAA	-33	NA	41671009	41644470	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_41644718_41649994_41650183_41650350_41650440_41652688_41652787_41653481_41653642_41662733_41662921_41663463_41663544_41670850
transcript_8938.known	chr10	-	4863	9	FSM	ENSMUSG00000060002.15	ENSMUST00000117440.8	4863	9	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	46.4837001001426	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGTAAAAGTAGTTTTGT	4021	False	NA	NA	False	ATTAAA	-19	NA	88339935	88305375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_88308847_88311287_88311399_88312209_88312336_88312871_88313031_88316676_88316809_88318092_88318178_88324243_88324386_88325442_88325591_88339446
transcript_89380.nnic	chr8	-	1006	6	NNC	ENSMUSG00000031594.10	novel	1120	8	NA	NA	5744	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	3.55527776692624	133	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATGGCCATGGTAATTGT	NA	False	NA	NA	False	AATAAA	-33	NA	41662446	41644470	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_41644718_41649994_41650183_41650350_41650440_41652688_41652787_41653481_41653642_41662222
transcript_89381.nnic	chr8	-	908	5	NNC	ENSMUSG00000031594.10	novel	1120	8	NA	NA	5744	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6.05702071979286	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATGGCCATGGTAATTGT	NA	False	NA	NA	False	AATAAA	-33	NA	41662446	41644470	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_41644718_41649994_41650183_41650350_41650440_41653481_41653642_41662222
transcript_89385.nic	chr8	+	569	3	ISM	ENSMUSG00000031592.11	ENSMUST00000210862.2	691	4	-198	1419	-185	-1419	5prime_fragment	FALSE	canonical	3	147	junction_1	7.5	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGTGTAGCAAGTGATAA	NA	False	NA	NA	False	AATAGA	-25	NA	41692603	41710884	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_41693001_41709032_41709148_41710827
transcript_89386.known	chr8	+	6624	38	FSM	ENSMUSG00000031592.11	ENSMUST00000045218.9	6624	38	0	0	0	0	multi-exon	TRUE	canonical	3	55	junction_5	37.5002702692963	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGCTTTTGGGAAATGTT	NA	False	NA	8	True	AATAAA	-20	NA	41692809	41785381	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_41693001_41709032_41709148_41710827_41711074_41712073_41712344_41714047_41714219_41720223_41720402_41723477_41723588_41725280_41725498_41727136_41727336_41728031_41728206_41728689_41728845_41728962_41729190_41732787_41732931_41733058_41733189_41735616_41735758_41736592_41736784_41739001_41739200_41740718_41740939_41741045_41741192_41741667_41741859_41743757_41743930_41746494_41746854_41757023_41757189_41762556_41762730_41763045_41763178_41765194_41765316_41766338_41766498_41766881_41767019_41768956_41769092_41774890_41775089_41777991_41778055_41778300_41778437_41778863_41779025_41780563_41780637_41781805_41782063_41783669_41783763_41783842_41783958_41785019
transcript_89396.known	chr8	-	2773	14	FSM	ENSMUSG00000031591.15	ENSMUST00000034000.15	2773	14	0	0	0	0	multi-exon	FALSE	canonical	3	999	junction_6	169.669117600863	1521	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATTTTTTTAAATAACTT	7501	False	NA	NA	False	NA	NA	NA	41827810	41793233	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41799332_41799388_41799967_41800113_41801124_41801171_41802586_41802662_41804930_41805010_41807050_41807138_41807863_41807955_41813289_41813337_41827546
transcript_8940.known	chr10	+	1169	8	FSM	ENSMUSG00000020059.10	ENSMUST00000125612.2	1169	8	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_4	7.98212288268514	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGGTTTCAGTATATC	NA	False	NA	4	True	AATAAA	-16	NA	88295525	88309098	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_88295575_88298322_88298466_88299224_88299289_88299697_88299733_88302300_88302419_88303144_88303245_88305407_88305507_88308537
transcript_89404.known	chr8	-	1039	9	FSM	ENSMUSG00000031590.9	ENSMUST00000033999.8	1039	9	0	0	0	0	multi-exon	FALSE	canonical	3	814	junction_1	88.4737778949221	6308	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGTTCTCGAGTCCTTT	NA	False	NA	-7	True	AATAAA	-23	NA	41870111	41850495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_41850682_41851992_41852104_41852601_41852694_41853798_41853904_41860681_41860797_41863300_41863359_41864259_41864386_41867839_41867911_41869936
transcript_89433.nnic	chr8	-	1812	8	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38822	0	at_least_one_novel_splicesite	FALSE	canonical	3	97	junction_5	54.8005660629188	120	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTTATTGCTTTCTG	NA	False	NA	0	True	TATAAA	-19	NA	43633345	43582843	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43594003_43594341_43595725_43595759_43633233
transcript_89436.nnic	chr8	-	1578	8	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38882	0	at_least_one_novel_splicesite	FALSE	canonical	3	90	junction_6	54.6308576927445	158	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTTATTGCTTTCTG	NA	False	NA	0	True	TATAAA	-19	NA	43633405	43582843	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43595725_43595759_43618053_43618097_43633233
transcript_8944.known	chr10	+	927	8	FSM	ENSMUSG00000020059.10	ENSMUST00000123244.8	927	8	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	38.7767024521326	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGGTTTCAGTATATC	NA	False	NA	4	True	AATAAA	-16	NA	88295525	88309098	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_88295575_88298322_88298466_88299224_88299289_88299697_88299733_88303144_88303245_88305407_88305507_88308537_88308643_88308766
transcript_89451.nnic	chr8	-	1552	7	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38899	0	at_least_one_novel_splicesite	FALSE	canonical	3	117	junction_6	46.881647676771	178	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTTATTGCTTTCTG	NA	False	NA	0	True	TATAAA	-19	NA	43633422	43582843	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43595725_43595759_43633233
transcript_89460.nnic	chr8	-	1530	6	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38910	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_5	84.5113010194495	95	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTTATTGCTTTCTG	NA	False	NA	0	True	TATAAA	-19	NA	43633433	43582843	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43633233
transcript_89462.nnic	chr8	-	1321	6	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38899	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_3	72.7532817129234	87	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTTATTGCTTTCTG	NA	False	NA	0	True	TATAAA	-19	NA	43633422	43582843	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43593679_43593776_43595725_43595759_43633233
transcript_89471.nnic	chr8	-	1227	5	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38828	0	at_least_one_novel_splicesite	FALSE	canonical	2	21	junction_2	79.3504883412824	76	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTTATTGCTTTCTG	NA	False	NA	0	True	TATAAA	-19	NA	43633351	43582843	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_43583726_43589312_43589411_43593679_43593776_43595725_43595759_43633233
transcript_89496.known	chr8	+	1552	9	FSM	ENSMUSG00000091490.4	ENSMUST00000210136.2	1552	9	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_2	178.11092049619	841	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGGCTCTCTGCATGT	NA	False	NA	21	True	AATAAA	-12	NA	43633577	43646918	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_43633650_43635378_43635395_43636158_43636403_43636739_43636836_43638315_43638496_43640607_43640749_43643105_43643129_43643305_43643407_43646239
transcript_89514.known	chr8	+	1519	8	FSM	ENSMUSG00000091490.4	ENSMUST00000209200.2	1519	8	0	0	0	0	multi-exon	FALSE	canonical	3	424	junction_1	49.9477277781891	1014	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAGCCATTAGACTTAA	NA	False	NA	4	True	AATATA	-5	NA	43633577	43646901	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_43633650_43636158_43636403_43636739_43636836_43638315_43638496_43640607_43640749_43643105_43643129_43643305_43643407_43646239
transcript_89515.known	chr8	+	1395	7	FSM	ENSMUSG00000091490.4	ENSMUST00000209872.2	1395	7	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_4	183.817542386163	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGGCTCTCTGCATGT	NA	False	NA	21	True	AATAAA	-12	NA	43633577	43646918	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_43633650_43636158_43636403_43636739_43636836_43638315_43638496_43643105_43643129_43643305_43643407_43646239
transcript_89516.known	chr8	+	1467	7	FSM	ENSMUSG00000091490.4	ENSMUST00000163869.2	1467	7	0	0	0	0	multi-exon	FALSE	canonical	3	435	junction_2	46.4351399504968	544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGGCTCTCTGCATGT	NA	False	NA	21	True	AATAAA	-12	NA	43636155	43646918	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_43636403_43636739_43636836_43638315_43638496_43640607_43640749_43643105_43643129_43643305_43643407_43646239
transcript_8955.known	chr10	-	852	4	FSM	ENSMUSG00000060002.15	ENSMUST00000073783.6	852	4	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	64.2201076160903	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTTTTCTTCCATATCTT	4169	False	NA	NA	False	NA	NA	NA	88339787	88322903	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_88323125_88324243_88324386_88325442_88325591_88339446
transcript_89559.known	chr8	-	1772	4	FSM	ENSMUSG00000051176.7	ENSMUST00000082120.5	1772	4	0	0	0	0	multi-exon	FALSE	canonical	3	2952	junction_3	637.888356654639	13202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGAGTTCAATTTCTGG	NA	False	NA	NA	False	AATAAA	-17	NA	43760017	43748103	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_43749574_43753664_43753743_43757512_43757597_43759877
transcript_89560.known	chr8	-	1744	4	FSM	ENSMUSG00000051176.7	ENSMUST00000209356.2	1744	4	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_3	1933.09774426667	4567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	AATAAA	-21	NA	43759987	43748099	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_43749574_43753664_43753743_43757512_43757595_43759877
transcript_89561.known	chr8	-	1837	5	FSM	ENSMUSG00000051176.7	ENSMUST00000211248.2	1837	5	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	1844.21519555067	4389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	AATAAA	-21	NA	43759973	43748099	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_43749574_43753664_43753743_43755911_43756017_43757512_43757597_43759877
transcript_89568.known	chr8	-	564	3	FSM	ENSMUSG00000109993.2	ENSMUST00000209295.2	564	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGGCAAATCATGTGCATT	NA	False	NA	NA	False	NA	NA	NA	44367641	44361692	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_44362086_44363471_44363549_44367547
transcript_89569.known	chr8	-	448	1	FSM	ENSMUSG00000110409.2	ENSMUST00000211534.2	448	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACGCTGCTGTGGTCTTTGT	NA	False	NA	NA	False	TTTAAA	-41	NA	45388196	45387748	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_45387700_45388200
transcript_89571.known	chr8	+	1048	3	FSM	ENSMUSG00000110260.2	ENSMUST00000209762.2	1048	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAAATGTTGCAGTGTGA	NA	False	NA	NA	False	TATAAA	-13	NA	45639777	45649578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_45640060_45642208_45642310_45648913
transcript_89573.known	chr8	-	936	3	FSM	ENSMUSG00000110231.2	ENSMUST00000209210.2	936	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	4	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACACAGAACTGACTCTT	NA	False	NA	NA	False	AGTAAA	-17	NA	45618256	45613530	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_45614092_45614492_45614559_45617947
transcript_89574.nic	chr8	-	1210	7	ISM	ENSMUSG00000079057.5	ENSMUST00000095328.6	3808	11	12921	1891	12921	-1891	3prime_fragment	TRUE	canonical	0	0	junction_1	1.37436854187255	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTAGTGTTTTTCCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	45773332	45759871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_45760146_45761416_45761597_45761693_45761829_45763219_45763323_45768571_45768758_45770703_45770831_45773127
transcript_89575.known	chr8	+	1604	7	FSM	ENSMUSG00000031636.8	ENSMUST00000034053.7	1604	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.25830573921179	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATTGTGAAGTAGTAGCC	NA	False	NA	NA	False	AATAAA	-23	NA	46338497	46372585	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_46338710_46349784_46349937_46353511_46353597_46361505_46361694_46368165_46368297_46370494_46370607_46371861
transcript_89578.known	chr8	-	1340	8	FSM	ENSMUSG00000071103.11	ENSMUST00000098786.3	1340	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	0.903507902905251	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATAATCCGGGGTTGCTGA	1876	False	NA	NA	False	AATAAA	-16	NA	46428289	46406644	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_46406850_46409433_46409604_46415290_46415471_46420892_46420969_46421063_46421202_46423390_46423611_46426540_46426718_46428115
transcript_8958.known	chr10	-	960	2	FSM	ENSMUSG00000112428.2	ENSMUST00000219185.2	960	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGAAACCCTGGACCACC	9870	False	NA	NA	False	AGTAAA	-40	NA	88494092	88485967	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_88486770_88493934
transcript_89585.known	chr8	-	927	5	FSM	ENSMUSG00000050914.17	ENSMUST00000053558.10	927	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_4	16.393596310755	778	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTGCATTCTTTACTA	NA	False	NA	NA	False	ATTAAA	-22	NA	46452904	46449938	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_46450163_46450650_46450858_46451433_46451526_46452287_46452441_46452653
transcript_89586.known	chr8	-	884	5	FSM	ENSMUSG00000050914.17	ENSMUST00000153674.8	884	5	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_4	25.936219847927	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTAAAATTTCTGTGCAT	NA	False	NA	NA	False	ATTAAA	-13	NA	46452904	46449947	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_46450163_46450650_46450858_46451433_46451526_46452287_46452441_46452687
transcript_89588.nnic	chr8	-	743	5	NNC	ENSMUSG00000050914.17	novel	884	5	NA	NA	-67	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_4	13.6083614002568	422	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTAAAATTTCTGTGCAT	NA	False	NA	NA	False	ATTAAA	-13	NA	46452971	46449947	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_46450163_46450650_46450858_46451433_46451526_46452287_46452441_46452895
transcript_89599.known	chr8	+	1640	12	FSM	ENSMUSG00000031634.14	ENSMUST00000034051.7	1640	12	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_6	20.6765727613893	548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTGTAGTCATGTAAATAC	8860	False	NA	104	True	AGTAAA	-19	NA	46428564	46449995	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_46428626_46432245_46432333_46433351_46433530_46433609_46433677_46436559_46436718_46437077_46437271_46438358_46438506_46444784_46444950_46445144_46445270_46447051_46447129_46448574_46448700_46449738
transcript_896.known	chr1	+	1272	7	FSM	ENSMUSG00000056763.17	ENSMUST00000117415.8	1272	7	0	0	0	0	multi-exon	FALSE	canonical	2	35	junction_1	34.3640639169597	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCAAAAAACCCCCAAATTG	NA	False	NA	NA	False	NA	NA	NA	10108486	10137343	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_10108570_10115300_10115410_10117648_10117752_10128944_10129049_10134557_10134639_10135547_10135647_10136650
transcript_89600.known	chr8	+	1613	11	FSM	ENSMUSG00000031634.14	ENSMUST00000130412.8	1613	11	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_5	20.5873747719324	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTTAGCTGTGATTTAA	8866	False	NA	3	True	AATAAA	-16	NA	46428570	46449894	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_46428626_46432245_46432333_46433351_46433677_46436559_46436718_46437077_46437271_46438358_46438506_46444784_46444950_46445144_46445270_46447051_46447129_46448574_46448700_46449738
transcript_89601.known	chr8	+	1430	3	FSM	ENSMUSG00000031631.16	ENSMUST00000145080.8	1430	3	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAACACTTGGAGTATCA	NA	False	NA	NA	False	AATATA	-13	NA	46616728	46623832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_46616787_46617798_46617934_46622595
transcript_89603.known	chr8	+	1166	3	FSM	ENSMUSG00000031631.16	ENSMUST00000145229.2	1166	3	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	7	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGTTAAAAAACAAGAAA	NA	False	NA	NA	False	AAAAAG	-2	NA	46616751	46623477	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_46616901_46617798_46617934_46622595
transcript_89606.known	chr8	+	2043	6	FSM	ENSMUSG00000031631.16	ENSMUST00000110376.8	2043	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	26.1793811997152	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGTTTTGATTCTGTTTT	NA	False	NA	14	True	AATAAA	-15	NA	46616771	46648623	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_46616901_46622595_46623690_46634754_46635024_46644616_46644768_46645621_46645729_46648330
transcript_89607.known	chr8	-	1925	4	FSM	ENSMUSG00000031633.5	ENSMUST00000034049.5	1925	4	0	0	0	0	multi-exon	FALSE	canonical	3	7531	junction_1	145.363911156334	12653	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGAGTTTGGGCTGGAA	NA	False	NA	NA	False	TATAAA	-13	NA	46664321	46659833	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_46660658_46661434_46661576_46662058_46662546_46663848
transcript_89623.known	chr8	-	1275	3	FSM	ENSMUSG00000031633.5	ENSMUST00000155986.2	1275	3	0	0	0	0	multi-exon	FALSE	canonical	3	7715	junction_1	86	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAACAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	46664067	46661006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_46661576_46662058_46662546_46663848
transcript_89624.known	chr8	-	1541	4	FSM	ENSMUSG00000047171.9	ENSMUST00000058636.9	1541	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTTGCTATCTTTTGCT	NA	False	NA	NA	False	AATAAA	-23	NA	46747708	46745075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_46745767_46746204_46746302_46746521_46746627_46747060
transcript_89629.known	chr8	+	3897	21	FSM	ENSMUSG00000018796.14	ENSMUST00000034046.13	3897	21	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_9	34.1571368823559	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTCTTTCAAGTGCCTT	2206	False	NA	17	True	AATAAA	-26	NA	46924073	46989088	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_46924268_46945836_46946064_46958685_46958804_46961369_46961435_46964396_46964499_46966327_46966428_46966609_46966789_46971304_46971338_46971485_46971538_46971997_46972072_46974304_46974383_46977979_46978115_46979280_46979416_46980226_46980323_46981616_46981690_46983423_46983513_46984006_46984124_46984824_46984969_46986402_46986505_46986601_46986674_46987376
transcript_8963.nnic	chr10	-	1751	5	NIC	ENSMUSG00000004359.17	novel	1763	6	NA	NA	-83	0	combination_of_known_splicesites	FALSE	canonical	3	169	junction_4	139.833829955415	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	88520960	88510633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_-_88511933_88513361_88513471_88514385_88514499_88515720_88515818_88520827
transcript_89631.known	chr8	+	3429	21	FSM	ENSMUSG00000018796.14	ENSMUST00000110372.9	3429	21	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	90.7041344151412	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACTACCTGATTTATGTG	9507	False	NA	NA	False	ATTAAA	-32	NA	46944002	46988618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_46944199_46945836_46946064_46958685_46958804_46961369_46961435_46964396_46964499_46966327_46966428_46966609_46966789_46971304_46971338_46971485_46971538_46971997_46972072_46974304_46974383_46977979_46978115_46979280_46979416_46980226_46980323_46981616_46981690_46983423_46983513_46984006_46984124_46984824_46984969_46986402_46986505_46986601_46986674_46987376
transcript_89634.known	chr8	-	3772	15	FSM	ENSMUSG00000038225.16	ENSMUST00000040468.16	3772	15	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	36.5959739059155	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAAAATATAAAAAAAA	NA	False	NA	-35	True	NA	NA	NA	47070235	47028653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_47029757_47031053_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47045791_47046504_47046739_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070168
transcript_89638.known	chr8	-	1833	14	FSM	ENSMUSG00000038225.16	ENSMUST00000209787.2	1833	14	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_6	19.6766764885012	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTTAAATTAGTGCCGG	NA	False	NA	NA	False	NA	NA	NA	47070243	47031897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47045791_47046504_47046739_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070168
transcript_8964.nnic	chr10	-	1254	5	NIC	ENSMUSG00000004359.17	novel	646	6	NA	NA	-83	3	combination_of_known_splicesites	FALSE	canonical	3	169	junction_4	139.833829955415	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTGTAGACTGTCTCTT	NA	False	NA	-2	True	AATAAA	-25	NA	88520960	88511130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_-_88511933_88513361_88513471_88514385_88514499_88515720_88515818_88520827
transcript_89647.known	chr8	+	783	9	FSM	ENSMUSG00000031629.15	ENSMUST00000093518.5	783	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	123.765908068418	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTGAGCCTCCTGCTGCC	NA	False	NA	NA	False	NA	NA	NA	47005121	47031403	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_47005163_47012903_47013007_47021644_47021715_47023005_47023115_47025786_47025866_47026467_47026516_47026883_47026946_47029260_47029418_47031289
transcript_89656.known	chr8	-	1748	2	FSM	ENSMUSG00000038225.16	ENSMUST00000132472.3	1748	2	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-10	NA	47070247	47063812	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_47065482_47070168
transcript_89657.known	chr8	+	997	6	FSM	ENSMUSG00000031629.15	ENSMUST00000211217.2	997	6	0	0	0	0	multi-exon	FALSE	canonical	3	283	junction_2	30.0865418418269	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTCCTTTTATTTTTGAG	NA	False	NA	21	True	NA	NA	NA	47005072	47016034	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_47005163_47007049_47007099_47009116_47009229_47012903_47013007_47014812_47014874_47015452
transcript_89658.known	chr8	-	346	3	FSM	ENSMUSG00000038225.16	ENSMUST00000210264.2	346	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	66.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGGCCAAGCCAGAAGAAC	NA	False	NA	NA	False	NA	NA	NA	47070217	47063562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_47063661_47065404_47065482_47070046
transcript_89660.nnic	chr8	+	1539	8	NNC	ENSMUSG00000031628.10	novel	2601	7	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	90.2784807228869	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTATTTGAGGGTTTG	NA	False	NA	21	True	CATAAA	-17	NA	47070409	47092724	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_47070537_47082768_47082837_47085351_47085477_47087232_47087362_47088411_47088588_47089236_47089358_47090953_47091181_47092158
transcript_89664.known	chr8	+	1520	7	FSM	ENSMUSG00000031628.10	ENSMUST00000093517.7	1520	7	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	80.3189821205977	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTTTTATTACTGGAAC	NA	False	NA	NA	False	TTTAAA	-9	NA	47070429	47091752	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_47070532_47082768_47082837_47085351_47085477_47087232_47087362_47088411_47088588_47089236_47089358_47090953
transcript_89674.known	chr8	+	1173	4	FSM	ENSMUSG00000031628.10	ENSMUST00000209668.2	1173	4	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_1	26.5455583227527	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAGAAAAGAAAAT	NA	False	NA	NA	False	AGTAAA	-5	NA	47070441	47088117	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_47070537_47082768_47082837_47085351_47085477_47087232
transcript_89675.known	chr8	+	480	2	FSM	ENSMUSG00000038173.16	ENSMUST00000210466.2	480	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGTTTTCATTTTCTTTA	1681	False	NA	NA	False	AGTAAA	-18	NA	47535355	47546290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_47535574_47546028
transcript_89676.known	chr8	-	4332	30	FSM	ENSMUSG00000038102.16	ENSMUST00000039061.15	4332	30	0	0	0	0	multi-exon	TRUE	canonical	3	87	junction_18	20.4181612288351	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTTTGGTTTTCTTTTAT	4054	False	NA	3	True	AATAAA	-29	NA	47986502	47943149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_47943954_47946273_47946442_47948037_47948172_47949953_47950046_47951688_47951801_47954587_47954745_47954842_47954909_47956346_47956467_47956916_47957039_47958368_47958518_47958620_47958809_47960615_47960772_47963905_47964037_47965370_47965504_47965595_47965658_47966317_47966464_47966788_47966844_47966915_47966995_47967085_47967166_47967818_47967913_47969493_47969642_47972606_47972741_47975385_47975483_47977559_47977634_47978005_47978106_47979974_47980090_47980994_47981066_47982363_47982534_47983686_47983913_47986353
transcript_89683.nic	chr8	-	1170	6	ISM	ENSMUSG00000038102.16	ENSMUST00000125065.8	4646	29	-22	34528	-22	0	5prime_fragment	FALSE	canonical	3	108	junction_5	19.61224107541	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATATCATTTTACCTTTA	4029	False	NA	NA	False	AATAAA	-23	NA	47986527	47977691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_47978106_47979974_47980090_47980994_47981066_47982363_47982534_47983686_47983913_47986353
transcript_89686.known	chr8	+	1371	8	FSM	ENSMUSG00000031568.17	ENSMUST00000175692.8	1371	8	0	0	0	0	multi-exon	FALSE	canonical	2	21	junction_2	58.3067189043231	691	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCTTTTCTCTCGGACTG	NA	False	NA	5	True	AATAAA	-13	NA	47986698	48004314	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_47986979_47990313_47990395_47995730_47995837_47995916_47996065_47997145_47997264_48000823_48000874_48001006_48001010_48003729
transcript_89695.known	chr8	-	2812	2	FSM	ENSMUSG00000063049.5	ENSMUST00000080353.3	2812	2	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_1	0	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAATGTCCTCCATCCTGA	NA	False	NA	NA	False	AATGAA	-21	NA	48128193	48120212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_48122372_48127540
transcript_89696.known	chr8	-	628	2	FSM	ENSMUSG00000063049.5	ENSMUST00000125536.2	628	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGTATTGCCCAAAGTGT	NA	False	NA	NA	False	TATAAA	-11	NA	48128591	48121789	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_48122372_48128545
transcript_89697.known	chr8	-	3393	3	FSM	ENSMUSG00000038069.7	ENSMUST00000212175.2	3393	3	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	31	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTATTAGATGATTGGGTA	NA	False	NA	NA	False	AATAAA	-18	NA	48166966	48162479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_48165330_48165922_48166054_48166554
transcript_89698.known	chr8	-	3464	3	FSM	ENSMUSG00000038069.7	ENSMUST00000038738.7	3464	3	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	33.5	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGAATGTGTGCTCTCAT	NA	False	NA	NA	False	TATAAA	-45	NA	48166967	48162378	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_48165330_48165953_48166054_48166554
transcript_89699.known	chr8	-	842	1	FSM	ENSMUSG00000038069.7	ENSMUST00000212658.2	842	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAATAAAGCATA	NA	False	NA	NA	False	NA	NA	NA	48166967	48166125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_48166100_48167000
transcript_89706.nnic	chr8	-	1225	8	NNC	ENSMUSG00000031563.9	novel	8678	23	NA	NA	135942	-4598	at_least_one_novel_splicesite	TRUE	canonical	3	3	junction_7	86.9447396632024	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCAGTTTCATCAGGTTTA	NA	False	NA	-16	True	AATATA	-29	NA	48307644	48281591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_48281820_48284646_48284775_48295899_48296143_48299181_48299275_48300428_48300594_48302340_48302525_48304939_48305062_48307582
transcript_89712.known	chr8	+	2493	6	FSM	ENSMUSG00000031562.17	ENSMUST00000174818.9	2493	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	146.129531580718	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACGTGTTTGCTTTTATA	NA	False	NA	8	True	ATTAAA	-14	NA	48563196	48594698	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292_48590410_48591213_48591914_48593377
transcript_89713.known	chr8	+	2096	6	FSM	ENSMUSG00000031562.17	ENSMUST00000170263.10	2096	6	0	0	0	0	multi-exon	FALSE	canonical	3	319	junction_1	42.4480859403578	1082	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTGTTTGCTTTTATATT	NA	False	NA	10	True	ATTAAA	-16	NA	48562992	48594700	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377
transcript_89715.known	chr8	+	2072	6	FSM	ENSMUSG00000031562.17	ENSMUST00000033966.14	2072	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	152.941034389074	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACGTGTTTGCTTTTATA	NA	False	NA	8	True	ATTAAA	-14	NA	48563047	48594698	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_48563317_48564693_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377
transcript_89718.nic	chr8	+	1093	5	ISM	ENSMUSG00000031562.17	ENSMUST00000174818.9	2493	6	-208	3072	-4	0	5prime_fragment	TRUE	canonical	3	18	junction_4	162.647625251646	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGACTGGAAGGTGGCT	NA	False	NA	NA	False	AATAAA	-20	NA	48562988	48591626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292_48590410_48591213
transcript_89726.known	chr8	+	786	4	FSM	ENSMUSG00000031562.17	ENSMUST00000173991.8	786	4	0	0	0	0	multi-exon	FALSE	canonical	3	319	junction_1	45.0209827623619	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCTGACATATTGTGCAT	NA	False	NA	NA	False	AATATA	-19	NA	48563199	48590726	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292
transcript_89733.nnic	chr8	+	1598	4	NNC	ENSMUSG00000031562.17	novel	799	6	NA	NA	25933	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	153.599045135921	198	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTGTTTGCTTTTATATT	NA	False	NA	10	True	ATTAAA	-16	NA	48589178	48594700	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_48589240_48590292_48590410_48591816_48591914_48593377
transcript_89737.known	chr8	+	1126	5	FSM	ENSMUSG00000031562.17	ENSMUST00000098773.6	1126	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	189.227871889952	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGACTGGAAGGTGGCT	NA	False	NA	NA	False	AATAAA	-20	NA	48563223	48591626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_48563552_48564693_48564826_48565002_48565139_48590292_48590410_48591213
transcript_89738.known	chr8	-	2267	10	FSM	ENSMUSG00000031561.17	ENSMUST00000110346.9	2267	10	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_9	21.6800528449085	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGCATTTTGGTCAGCTG	NA	False	NA	NA	False	CATAAA	-39	NA	49008348	48788227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_48788810_48793988_48794190_48795291_48795487_48795649_48795752_48796266_48796478_48802233_48802449_48820345_48820469_48848470_48848710_48870042_48870281_49008187
transcript_8974.known	chr10	-	646	6	FSM	ENSMUSG00000004359.17	ENSMUST00000138734.2	646	6	0	0	0	0	multi-exon	FALSE	canonical	3	380	junction_4	47.5815090134813	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGATGGCCAGAGCCCTGA	NA	False	NA	NA	False	NA	NA	NA	88520877	88511751	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_88511933_88513361_88513471_88514385_88514499_88515720_88515818_88516340_88516437_88520827
transcript_89741.known	chr8	-	2526	9	FSM	ENSMUSG00000031561.17	ENSMUST00000145344.2	2526	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	26.5774222790699	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAAAAAAGCCAAAATT	NA	False	NA	NA	False	NA	NA	NA	48753134	48728949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_48729940_48730701_48730857_48731992_48732226_48740825_48741076_48745153_48745298_48746541_48746810_48751820_48752083_48752628_48752749_48753030
transcript_89742.known	chr8	-	191	1	FSM	ENSMUSG00000064682.3	ENSMUST00000082748.3	191	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGGGGAATAAGAATAGTCA	NA	False	NA	NA	False	NA	NA	NA	52790140	52789949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_52789900_52790100
transcript_89749.known	chr8	+	1147	9	FSM	ENSMUSG00000031521.6	ENSMUST00000211424.2	1147	9	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_6	118.936892405174	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCTTACTGACATTATGGA	NA	False	NA	-65	True	NA	NA	NA	53964761	53976369	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_53964967_53966576_53966731_53967271_53967385_53968978_53969092_53970788_53970904_53971950_53972005_53973279_53973380_53974084_53974219_53976210
transcript_89751.known	chr8	+	1181	9	FSM	ENSMUSG00000031521.6	ENSMUST00000033920.6	1181	9	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_3	34.8440723079264	1178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTGACATTATGGAATGT	NA	False	NA	-61	True	NA	NA	NA	53964761	53976373	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_53964967_53966576_53966731_53967271_53967385_53968978_53969092_53970788_53970904_53971950_53972027_53973271_53973380_53974084_53974219_53976210
transcript_89760.known	chr8	+	2250	10	FSM	ENSMUSG00000031521.6	ENSMUST00000209811.2	2250	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	164.347268585024	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTTTGTCTACTTCCTT	NA	False	NA	22	True	AATAAA	-16	NA	53964832	53976456	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_53965944_53966576_53966731_53967271_53967385_53968978_53969092_53970788_53970904_53971650_53971731_53971950_53972027_53973271_53973380_53974084_53974219_53976210
transcript_89761.known	chr8	-	2253	10	FSM	ENSMUSG00000039396.12	ENSMUST00000047768.11	2253	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	6.19039478985961	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTCTTTTGTAAGTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	54092100	54039901	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_54040363_54041959_54042135_54052133_54052555_54053985_54054156_54058667_54058835_54060362_54060438_54061749_54061964_54062438_54062574_54076652_54076778_54091790
transcript_89762.nic	chr8	-	1867	5	ISM	ENSMUSG00000039396.12	ENSMUST00000047768.11	2253	10	23	19430	23	18	5prime_fragment	FALSE	canonical	3	34	junction_3	2.95803989154981	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGCCCTTTATCAGGCC	NA	False	NA	NA	False	NA	NA	NA	54092077	54059331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_54060438_54061749_54061964_54062438_54062574_54076652_54076778_54091790
transcript_89765.known	chr8	+	2449	7	FSM	ENSMUSG00000031520.7	ENSMUST00000033919.6	2449	7	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_4	8.69386757049665	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTAAAAAAAGAAATCACTA	1021	False	NA	NA	False	NA	NA	NA	54530640	54640131	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_54530961_54609992_54610195_54612327_54612519_54622059_54622212_54633736_54633844_54634121_54634456_54638988
transcript_89767.known	chr8	-	3466	5	FSM	ENSMUSG00000054408.10	ENSMUST00000067476.9	3466	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	423.496753234308	973	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAGGTTTATGTGTTTTT	NA	False	NA	-4	True	AATAAA	-38	NA	54983033	54973467	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_54976431_54977975_54978092_54979485_54979563_54981376_54981451_54982797
transcript_89772.known	chr8	-	1043	5	FSM	ENSMUSG00000039375.17	ENSMUST00000129132.3	1043	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.82915619758885	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTCTGTGTATTGAAAT	NA	False	NA	NA	False	ATTAAA	-18	NA	55177383	55140374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_55140813_55143038_55143270_55146091_55146276_55149303_55149433_55177322
transcript_89774.known	chr8	+	1683	7	FSM	ENSMUSG00000031613.10	ENSMUST00000034026.10	1683	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	3.18416219575713	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATAAATTGCCTATTCCTT	NA	False	NA	NA	False	AATAAA	-18	NA	56747619	56774078	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_56747748_56747973_56748098_56751390_56751498_56760628_56760726_56770784_56770862_56772027_56772192_56773092
transcript_89784.nic	chr8	-	1773	12	NIC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_11	55.4532041566551	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTATATGTGCCGATTTT	NA	False	NA	-5	True	AATAAA	-18	NA	57003916	56984556	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003097_57003157_57003579
transcript_89785.nic	chr8	-	1625	12	NIC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_11	54.5031654247927	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTATATGTGCCGATTTT	NA	False	NA	-5	True	AATAAA	-18	NA	57003911	56984556	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003097_57003157_57003722
transcript_89788.known	chr8	-	1690	11	FSM	ENSMUSG00000038215.16	ENSMUST00000040330.15	1690	11	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_10	43.9777216326631	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTATATGTGCCGATTTT	NA	False	NA	-5	True	AATAAA	-18	NA	57003892	56984556	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003579
transcript_89789.nic	chr8	-	1569	11	NIC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	61	junction_10	38.0914688611505	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTATATGTGCCGATTTT	NA	False	NA	-5	True	AATAAA	-18	NA	57003914	56984556	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003722
transcript_89791.nnic	chr8	-	1490	11	NNC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_10	51.662849321345	90	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTATATGTGCCGATTTT	NA	False	NA	-5	True	AATAAA	-18	NA	57003911	56984556	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003798
transcript_89798.known	chr8	-	770	6	FSM	ENSMUSG00000038215.16	ENSMUST00000140107.8	770	6	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_5	52.2784850583871	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGTGAAAAGAAAAGGGACA	NA	False	NA	NA	False	NA	NA	NA	57003878	56995940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003097_57003157_57003722
transcript_89801.known	chr8	+	3571	6	FSM	ENSMUSG00000038206.14	ENSMUST00000040218.13	3571	6	0	0	0	0	multi-exon	TRUE	canonical	3	53	junction_4	8.56504524214554	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCTTGCTGAATATGCA	NA	False	NA	NA	False	NA	NA	NA	57004124	57046974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_57004412_57017592_57017930_57022318_57022446_57041041_57041161_57043092_57043290_57044470
transcript_89808.known	chr8	-	1178	4	FSM	ENSMUSG00000031609.4	ENSMUST00000034022.4	1178	4	0	0	0	0	multi-exon	FALSE	canonical	3	1617	junction_3	52.2961651451508	222	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTGCTTCAGCCTGTTT	NA	False	NA	97	True	AATAAA	-14	NA	57940894	57935740	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_57936085_57938075_57938175_57938543_57938670_57940285
transcript_89812.nnic	chr8	+	946	4	NNC	ENSMUSG00000096917.3	novel	2618	3	NA	NA	-135	1387	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_3	55.8629274802768	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGTCTATTGGTTTTGTT	NA	False	NA	16	True	NA	NA	NA	57940952	57963298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_57941228_57943373_57943502_57959561_57959836_57963029
transcript_89813.nnic	chr8	+	859	4	NNC	ENSMUSG00000096917.3	novel	2618	3	NA	NA	-135	1392	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	50.4799189997589	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTATTGGTTTTGTTTCGCT	NA	False	NA	21	True	NA	NA	NA	57940952	57963303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_57941228_57943373_57943502_57959561_57959836_57963121
transcript_89825.nnic	chr8	+	844	3	NNC	ENSMUSG00000096917.3	novel	2618	3	NA	NA	2183	1457	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_2	67	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGTGCATCAGTAATTTCA	NA	False	NA	86	True	AATACA	-13	NA	57943270	57963368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_57943502_57959561_57959836_57963029
transcript_89826.nnic	chr8	+	687	3	NNC	ENSMUSG00000096917.3	novel	2618	3	NA	NA	2183	1392	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	59	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTATTGGTTTTGTTTCGCT	NA	False	NA	21	True	NA	NA	NA	57943270	57963303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_57943502_57959561_57959836_57963121
transcript_89829.nnic	chr8	+	603	3	NNC	ENSMUSG00000096917.3	novel	298	2	NA	NA	-29	1392	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	13	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTATTGGTTTTGTTTCGCT	NA	False	NA	21	True	NA	NA	NA	57958819	57963303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_57958967_57959561_57959836_57963121
transcript_89830.nnic	chr8	+	660	3	NNC	ENSMUSG00000096917.3	novel	298	2	NA	NA	-21	1389	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	3	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCTATTGGTTTTGTTTC	NA	False	NA	18	True	NA	NA	NA	57958827	57963300	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_57958943_57959561_57959836_57963029
transcript_89831.nnic	chr8	+	571	3	NNC	ENSMUSG00000096917.3	novel	298	2	NA	NA	-21	1392	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	11	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTATTGGTTTTGTTTCGCT	NA	False	NA	21	True	NA	NA	NA	57958827	57963303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_57958943_57959561_57959836_57963121
transcript_89833.known	chr8	+	298	2	FSM	ENSMUSG00000096917.3	ENSMUST00000210752.2	298	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTCCTGCTTCTTTCAA	NA	False	NA	9	True	NA	NA	NA	57958848	57959765	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_57958943_57959561
transcript_89849.known	chr8	+	414	3	FSM	ENSMUSG00000054717.8	ENSMUST00000210871.2	414	3	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_1	3614	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTTGATCTGAGAACTAAC	NA	False	NA	NA	False	AAAAAG	-28	NA	57965007	57966243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_57965040_57965548_57965783_57966095
transcript_8985.known	chr10	+	2080	6	FSM	ENSMUSG00000060904.15	ENSMUST00000116234.9	2080	6	0	0	0	0	multi-exon	FALSE	canonical	3	1125	junction_1	68.5466264669531	4281	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGATGTCTTTAGTGTCTT	NA	False	NA	14	True	AATAAA	-23	NA	88566929	88579956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_88567427_88569404_88569543_88571759_88571842_88572952_88573065_88577768_88577948_88578884
transcript_89851.known	chr8	+	2628	5	FSM	ENSMUSG00000054717.8	ENSMUST00000067925.8	2628	5	0	0	0	0	multi-exon	FALSE	canonical	3	4513	junction_1	1044.37167114969	8564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGATGTTCTGTTTTGCTT	NA	False	NA	5	True	AAAACA	-17	NA	57964940	57969033	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_57965040_57965608_57965783_57966095_57966242_57966323_57966499_57966999
transcript_89852.known	chr8	-	4313	12	FSM	ENSMUSG00000031608.14	ENSMUST00000034021.12	4313	12	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_6	43.6895509190027	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCTTTTCAGTGCTTGTA	NA	False	NA	-3	True	AATAAA	-18	NA	58106065	57976861	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_57979286_57984635_57984765_57985661_57985761_57989616_57989836_57991119_57991243_57993053_57993172_57995545_57995729_57998362_57998443_57998702_57998834_58005477_58005645_58036800_58037262_58105886
transcript_89853.known	chr8	-	3413	12	FSM	ENSMUSG00000031608.14	ENSMUST00000110316.3	3413	12	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_6	28.2342620537355	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAAAGAAAAGC	NA	False	NA	NA	False	GATAAA	-19	NA	58106037	57977733	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_57979286_57984635_57984765_57985661_57985761_57989616_57989836_57991119_57991243_57993053_57993172_57995868_57996052_57998362_57998443_57998702_57998834_58005477_58005645_58036800_58037262_58105886
transcript_8986.known	chr10	-	8821	62	FSM	ENSMUSG00000004356.9	ENSMUST00000004470.9	8821	62	0	0	0	0	multi-exon	TRUE	canonical	3	123	junction_48	34.745281900583	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTGCCTGAAAGACTATG	NA	False	NA	-1	True	ATTAAA	-16	NA	88662666	88582468	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_88582922_88583137_88583284_88584087_88584215_88585121_88585404_88586513_88586586_88587206_88587395_88588768_88588902_88589497_88589630_88590338_88590522_88590612_88590683_88591049_88591130_88592886_88592998_88593718_88593851_88594165_88594337_88596731_88596849_88597604_88597747_88598630_88598798_88600535_88600704_88601272_88601372_88602924_88603082_88603314_88603455_88604496_88604787_88606233_88606317_88606546_88606687_88607723_88607862_88608289_88608431_88608713_88608870_88610533_88610687_88610786_88610838_88611070_88611215_88612025_88612114_88613266_88613412_88614084_88614309_88616809_88616890_88618434_88618579_88621851_88622061_88623316_88623484_88626912_88627039_88627545_88627632_88628460_88628552_88631238_88631428_88634142_88634384_88634545_88634626_88636978_88637056_88640384_88640544_88641997_88642061_88643188_88643340_88644943_88645050_88645576_88645666_88645791_88645948_88649778_88649958_88651730_88651809_88652739_88652875_88653040_88653188_88653727_88653884_88654350_88654489_88655129_88655212_88656688_88656878_88657601_88657735_88657865_88657933_88661279_88661361_88662467
transcript_89877.nnic	chr8	+	744	4	NIC	ENSMUSG00000038005.16	novel	1000	7	NA	NA	-127	0	combination_of_known_splicesites	FALSE	canonical	3	57	junction_1	388.477655585091	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACGGCTCTTCTAGTGTT	NA	False	NA	15	True	AATAAA	-28	NA	61343324	61360607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_61343571_61357033_61357122_61358581_61358755_61360370
transcript_8988.known	chr10	-	6748	11	FSM	ENSMUSG00000074802.12	ENSMUST00000099374.9	6748	11	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_8	13.3450365304858	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTTTGCCTAACTTTATAA	NA	False	NA	49	True	AATAAA	-18	NA	89279829	89244684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_89250355_89252881_89252990_89257318_89257458_89258076_89258141_89262269_89262412_89264891_89265008_89266745_89266915_89269626_89269675_89270151_89270224_89272364_89272472_89279716
transcript_89884.known	chr8	+	531	3	FSM	ENSMUSG00000038005.16	ENSMUST00000146863.2	531	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	396.5	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGCTCTTCTAGTGTTTC	NA	False	NA	17	True	AATAAA	-30	NA	61343451	61360609	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_61343571_61358581_61358755_61360370
transcript_89885.known	chr8	+	1191	8	FSM	ENSMUSG00000038005.16	ENSMUST00000037190.15	1191	8	0	0	0	0	multi-exon	FALSE	canonical	3	724	junction_4	79.3373062516324	6552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCTAGTGTTTCTTTCA	NA	False	NA	22	True	AATAAA	-35	NA	61343484	61360614	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_61343571_61346734_61346895_61348494_61348685_61349771_61349871_61353117_61353269_61357033_61357122_61358581_61358755_61360370
transcript_89886.known	chr8	+	1000	7	FSM	ENSMUSG00000038005.16	ENSMUST00000149267.8	1000	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	318.3514829032	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACGGCTCTTCTAGTGTT	NA	False	NA	15	True	AATAAA	-28	NA	61343478	61360607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_61343571_61346734_61346895_61349771_61349871_61353117_61353269_61357033_61357122_61358581_61358755_61360370
transcript_89887.known	chr8	-	4175	14	FSM	ENSMUSG00000004319.16	ENSMUST00000004430.14	4175	14	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	79.7742376590516	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATCAGTTAATATTGCACA	NA	False	NA	NA	False	ATTAAA	-14	NA	61436273	61364956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_61366210_61367786_61367863_61372373_61372591_61375823_61376223_61380265_61380453_61382104_61382651_61383714_61383796_61386114_61386322_61387518_61387642_61390333_61390522_61391581_61391682_61394290_61394449_61428765_61428942_61435809
transcript_89888.known	chr8	-	4099	13	FSM	ENSMUSG00000004319.16	ENSMUST00000110301.2	4099	13	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_11	50.7408995672021	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATCAGTTAATATTGCACA	NA	False	NA	NA	False	ATTAAA	-14	NA	61436273	61364956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_61366210_61372373_61372591_61375823_61376223_61380265_61380453_61382104_61382651_61383714_61383796_61386114_61386322_61387518_61387642_61390333_61390522_61391581_61391682_61394290_61394449_61428765_61428942_61435809
transcript_8989.known	chr10	-	6305	11	FSM	ENSMUSG00000074802.12	ENSMUST00000105298.3	6305	11	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	9.03382532485547	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGTTTGCTTTTTTAAT	NA	False	NA	-17	True	ATTAAA	-17	NA	89279829	89245124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_89250355_89252881_89252990_89257318_89257458_89258076_89258141_89262269_89262412_89264891_89265008_89266745_89266915_89269626_89269675_89270154_89270224_89272364_89272472_89279716
transcript_89893.known	chr8	-	5518	12	FSM	ENSMUSG00000004319.16	ENSMUST00000093490.9	5518	12	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_11	42.8184713366008	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTGGCTTTTAATTGCA	NA	False	NA	-1	True	ATTAAA	-18	NA	61436334	61363422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_61366210_61372373_61372591_61375823_61376223_61380265_61380453_61382104_61382651_61383714_61383796_61386114_61386322_61387518_61387642_61390333_61390522_61391581_61391682_61394290_61394449_61435809
transcript_899.known	chr1	+	1268	7	FSM	ENSMUSG00000056763.17	ENSMUST00000119714.8	1268	7	0	0	0	0	multi-exon	FALSE	canonical	2	91	junction_2	18.4157239577729	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAACCCA	NA	False	NA	NA	False	NA	NA	NA	10110009	10137327	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_10110105_10115300_10115410_10117648_10117752_10128944_10129049_10134557_10134639_10135547_10135647_10136650
transcript_8990.known	chr10	-	3566	18	FSM	ENSMUSG00000069539.12	ENSMUST00000092227.12	3566	18	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_2	5.88058797050879	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTATGCTTAGTAAAAGCA	NA	False	NA	NA	False	NA	NA	NA	89522130	89475813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_89476979_89477852_89477973_89481323_89481417_89481538_89481606_89482620_89482722_89485826_89485946_89486689_89486823_89488804_89488919_89489965_89490089_89492569_89492747_89493671_89493798_89495100_89495218_89495996_89496219_89498177_89498328_89502578_89502724_89505506_89505665_89514139_89514345_89521899
transcript_89900.nnic	chr8	-	848	3	NNC	ENSMUSG00000004319.16	novel	5518	12	NA	NA	-22	-35867	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	53.5	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAGTATTCTGTTTTCTTC	NA	False	NA	NA	False	AATAAA	-27	NA	61436356	61427540	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_61427666_61428765_61428942_61435809
transcript_89901.known	chr8	-	3034	5	FSM	ENSMUSG00000004319.16	ENSMUST00000147824.8	3034	5	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_3	69.2188558125602	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTTAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	61436278	61388390	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_61390522_61391581_61391682_61394290_61394449_61428765_61428942_61435809
transcript_89902.known	chr8	+	5401	33	FSM	ENSMUSG00000031644.20	ENSMUST00000034065.14	5401	33	0	0	0	0	multi-exon	TRUE	canonical	3	31	junction_16	13.1719028024618	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATATCAGTTGTCCTTATT	NA	False	NA	9	True	NA	NA	NA	61446228	61584380	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_61446798_61459662_61459811_61460192_61460290_61465126_61465225_61469256_61469341_61472876_61472945_61473069_61473157_61475244_61475300_61481692_61481894_61487058_61487120_61488965_61489118_61496266_61496327_61496948_61497009_61497093_61497142_61497292_61497368_61502817_61502982_61507553_61507657_61525309_61525394_61525788_61525867_61526538_61526635_61539432_61539562_61542471_61542532_61542604_61542834_61551409_61551563_61552913_61553079_61557146_61557268_61558584_61558674_61559828_61560068_61573942_61574095_61577145_61577355_61578029_61578161_61578997_61579131_61583177
transcript_89910.known	chr8	-	879	1	FSM	ENSMUSG00000109610.2	ENSMUST00000210343.2	879	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	655	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGTTTTTATATGAGAA	NA	False	NA	NA	False	NA	NA	NA	61834421	61833542	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_61833500_61834400
transcript_89914.known	chr8	+	4309	5	FSM	ENSMUSG00000031641.15	ENSMUST00000034058.14	4309	5	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_4	10.8483869768736	498	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGGCCTCCTCCTCTCT	2566	False	NA	NA	False	ATTAAA	-29	NA	61940767	61959728	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_61941025_61942973_61943095_61944578_61944713_61948101_61948237_61956066
transcript_89920.nic	chr8	-	1464	8	ISM	ENSMUSG00000058056.17	ENSMUST00000121200.9	4193	12	57504	1799	203	1693	3prime_fragment	FALSE	canonical	3	101	junction_4	7.79848232226067	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAACACCAAAATCATATT	NA	False	NA	NA	False	NA	NA	NA	61986672	61966265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_61966559_61968236_61968371_61968902_61969069_61969568_61969777_61975917_61976051_61978101_61978197_61984945_61985096_61986387
transcript_89932.known	chr8	+	1122	6	FSM	ENSMUSG00000025521.16	ENSMUST00000026595.13	1122	6	0	0	0	0	multi-exon	FALSE	canonical	3	529	junction_4	36.201657420621	539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTTTTGTATGTTGTGA	NA	False	NA	25	True	TATAAA	-17	NA	65399836	65421685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_65399986_65409037_65409185_65411996_65412262_65416849_65416985_65418190_65418294_65421362
transcript_89933.known	chr8	+	916	5	FSM	ENSMUSG00000025521.16	ENSMUST00000079896.9	916	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	253.637536654179	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAATGTTTTGTATGTTGT	NA	False	NA	23	True	TATAAA	-15	NA	65399905	65421683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_65399986_65409037_65409185_65411996_65412262_65418190_65418294_65421362
transcript_89935.known	chr8	-	975	4	FSM	ENSMUSG00000079042.11	ENSMUST00000142822.4	975	4	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_3	201.802433638007	1126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGAGTTTATTGTGTGT	NA	False	NA	-21	True	ATTAAA	-21	NA	65489988	65481068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_65481644_65488316_65488407_65489541_65489796_65489932
transcript_89938.known	chr8	-	945	3	FSM	ENSMUSG00000079042.11	ENSMUST00000124790.8	945	3	0	0	0	0	multi-exon	FALSE	canonical	3	429	junction_2	5	1804	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTATGAGTTTATTGTG	NA	False	NA	-24	True	ATTAAA	-18	NA	65489824	65481071	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_65481644_65488316_65488407_65489541
transcript_8994.nic	chr10	+	371	2	ISM	ENSMUSG00000097383.2	ENSMUST00000181598.2	3027	3	-3	11499	-3	-11499	5prime_fragment	FALSE	canonical	2	2	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTCCTATTTATTTCTTC	NA	False	NA	NA	False	ACTAAA	-2	NA	89522229	89525229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_89522382_89525010
transcript_89953.known	chr8	-	4328	7	FSM	ENSMUSG00000025591.7	ENSMUST00000026681.7	4328	7	0	0	0	0	multi-exon	FALSE	canonical	3	650	junction_5	98.3165239870129	1518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCTGAGTCTGATAACAAA	NA	False	NA	0	True	AATAAA	-17	NA	66939171	66925769	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_66929562_66930666_66930710_66932991_66933141_66934114_66934200_66935157_66935196_66936709_66936823_66939063
transcript_89954.known	chr8	-	3150	7	FSM	ENSMUSG00000025591.7	ENSMUST00000143972.2	3150	7	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_5	270.629153804406	433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAAAAAAAAAGATAATTAT	NA	False	NA	NA	False	NA	NA	NA	66939149	66926981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_66929562_66930666_66930710_66932991_66933141_66934114_66934200_66935157_66935252_66936709_66936823_66939063
transcript_89955.known	chr8	-	1895	2	FSM	ENSMUSG00000025591.7	ENSMUST00000145787.2	1895	2	0	0	0	0	multi-exon	FALSE	canonical	3	974	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	66939182	66935046	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_66936823_66939063
transcript_89956.known	chr8	+	2021	1	FSM	ENSMUSG00000025519.6	ENSMUST00000002025.5	2021	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATTCTGGTTTTCAAGTA	NA	False	NA	NA	False	TATAAA	-15	NA	66964407	66966428	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_66964400_66966400
transcript_89957.known	chr8	+	1208	2	FSM	ENSMUSG00000025588.5	ENSMUST00000212171.2	1208	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCCTTTCAATATTAATCAA	NA	False	NA	NA	False	AATAAA	-28	NA	67933572	67944732	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_67933668_67943619
transcript_89960.known	chr8	+	1396	2	FSM	ENSMUSG00000051147.11	ENSMUST00000093470.7	1396	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTCAAAGTGGTATATTGA	NA	False	NA	NA	False	AATAAA	-25	NA	67947509	67955236	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_67947555_67953885
transcript_89963.known	chr8	+	2718	9	FSM	ENSMUSG00000053886.5	ENSMUST00000066594.4	2718	9	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_7	6.37867541108654	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGAGTTGCCTTGGTCA	NA	False	NA	17	True	NA	NA	NA	68729218	68800346	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_68729525_68734684_68735064_68746954_68747112_68749305_68749478_68781903_68782013_68783686_68783889_68787716_68787848_68798604_68798826_68799305
transcript_89970.known	chr8	+	4250	18	FSM	ENSMUSG00000031864.17	ENSMUST00000110242.8	4250	18	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_16	214.082317705889	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCAGGCCTAATGCCAT	NA	False	NA	NA	False	AATAAA	-24	NA	69246607	69282060	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69276841_69276920_69279928
transcript_89971.known	chr8	+	4192	18	FSM	ENSMUSG00000031864.17	ENSMUST00000070713.8	4192	18	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_17	216.037065895717	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCAGGCCTAATGCCAT	NA	False	NA	NA	False	AATAAA	-24	NA	69246665	69282060	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69277703_69277782_69279928
transcript_89975.known	chr8	+	4201	17	FSM	ENSMUSG00000031864.17	ENSMUST00000034328.13	4201	17	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_4	79.6960779696843	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAGGCCTAATGCCATGT	NA	False	NA	NA	False	AATAAA	-26	NA	69246580	69282062	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69279928
transcript_89980.nic	chr8	+	1333	9	ISM	ENSMUSG00000031864.17	ENSMUST00000110241.8	2322	16	0	13894	0	-5995	5prime_fragment	FALSE	canonical	3	438	junction_4	90.4087074069749	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGAATTAAGTGTAAGTTA	NA	False	NA	NA	False	ATTAAA	-6	NA	69246586	69261269	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027
transcript_89981.known	chr8	+	1408	4	FSM	ENSMUSG00000031864.17	ENSMUST00000146322.8	1408	4	0	0	0	0	multi-exon	FALSE	canonical	3	644	junction_3	36.0030862874591	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGCTTCAG	NA	False	NA	NA	False	NA	NA	NA	69246607	69251453	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410
transcript_89982.known	chr8	+	2328	3	FSM	ENSMUSG00000031864.17	ENSMUST00000145140.2	2328	3	0	0	0	0	multi-exon	FALSE	canonical	3	700	junction_1	15.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGCTTCAG	NA	False	NA	NA	False	NA	NA	NA	69246625	69251453	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_69246801_69247262_69247331_69249368
transcript_89983.known	chr8	+	3954	1	FSM	ENSMUSG00000015568.17	ENSMUST00000213071.2	3954	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69333206	69337160	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_69333200_69337200
transcript_89984.known	chr8	+	4115	10	FSM	ENSMUSG00000015568.17	ENSMUST00000015712.15	4115	10	0	0	0	0	multi-exon	TRUE	canonical	3	87	junction_5	14.4871164560059	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAGTCATCATTTTGTATC	NA	False	NA	13	True	AATAAA	-24	NA	69333142	69359586	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_69333493_69340094_69340256_69345246_69345427_69347278_69347391_69348313_69348548_69349250_69349494_69352068_69352190_69353799_69353983_69354935_69355038_69357157
transcript_89989.nnic	chr8	-	966	4	NNC	ENSMUSG00000110594.2	novel	527	2	NA	NA	-26204	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	2.16024689946929	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATATCCTCTGACATGAT	NA	False	NA	NA	False	NA	NA	NA	69480539	69423796	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_69424161_69454172_69454288_69460610_69460716_69480157
transcript_8999.known	chr10	-	1705	11	FSM	ENSMUSG00000019948.5	ENSMUST00000020109.5	1705	11	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_5	22.702422778197	1445	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATATCTGTTTAATGTTTA	NA	False	NA	-18	True	AATAAA	-21	NA	89568157	89547832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_89548423_89550731_89550871_89552934_89553107_89560861_89560941_89561032_89561132_89561463_89561521_89561629_89561766_89562498_89562623_89564015_89564085_89564761_89564880_89568035
transcript_89990.nnic	chr8	-	855	3	NNC	ENSMUSG00000110594.2	novel	527	2	NA	NA	-26198	0	at_least_one_novel_splicesite	TRUE	canonical	3	5	junction_2	3.5	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATATCCTCTGACATGAT	NA	False	NA	NA	False	NA	NA	NA	69480533	69423796	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_69424161_69454172_69454288_69480157
transcript_89991.known	chr8	-	3115	17	FSM	ENSMUSG00000036330.13	ENSMUST00000037478.13	3115	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1.29753371825167	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGATAGTATATGCTGTT	NA	False	NA	NA	False	AATAAA	-14	NA	69541874	69490362	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_69491558_69492892_69493027_69493233_69493354_69493629_69493694_69495365_69495418_69496576_69496656_69503931_69504028_69504104_69504166_69517945_69517990_69518207_69518298_69519791_69519885_69520795_69520880_69524714_69524774_69526207_69526563_69527685_69527958_69529840_69529916_69541632
transcript_89992.known	chr8	+	2825	14	FSM	ENSMUSG00000006273.15	ENSMUST00000006435.8	2825	14	0	0	0	0	multi-exon	TRUE	canonical	3	1214	junction_12	88.1479391228044	1323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGAAATGACTCTGTGTTT	NA	False	NA	18	True	AATAAA	-22	NA	69541297	69566363	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_69541581_69548871_69548928_69554016_69554116_69554587_69554682_69554815_69554894_69555102_69555243_69555413_69555516_69556031_69556130_69556296_69556421_69558460_69558612_69560233_69560317_69560934_69561040_69562531_69562662_69565081
transcript_9.known	ERCC-00022	+	735	1	FSM	ERCC-00022A	DQ855004	735	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	805	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_ERCC-00022_+_0_700
transcript_9000.known	chr10	+	6448	21	FSM	ENSMUSG00000019951.11	ENSMUST00000020112.7	6448	21	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_11	11.4144645078076	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACTTTGTCCGATTGGTT	NA	False	NA	21	True	TATAAA	-32	NA	89580852	89655733	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_89581151_89608448_89608612_89609941_89609981_89611800_89611893_89615696_89615887_89616988_89617130_89618431_89618603_89622966_89623148_89625159_89625244_89626412_89626596_89627224_89627344_89630344_89630487_89638880_89639075_89640573_89642076_89642485_89642659_89644379_89644523_89645489_89645641_89647348_89647603_89647905_89648015_89651901_89652084_89653796
transcript_90006.known	chr8	+	507	2	FSM	ENSMUSG00000006273.15	ENSMUST00000125211.2	507	2	0	0	0	0	multi-exon	FALSE	canonical	3	1413	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAAGTAATGTTCTTC	NA	False	NA	NA	False	NA	NA	NA	69541440	69549238	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_69541581_69548871
transcript_90011.known	chr8	+	3001	4	FSM	ENSMUSG00000059897.6	ENSMUST00000212681.2	3001	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	2.49443825784929	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGACCCTTGTCCTGTA	7200	False	NA	27	True	AATAAA	-18	NA	69661689	69683188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_69661812_69678994_69679122_69679323_69679382_69680494
transcript_90012.known	chr8	+	493	3	FSM	ENSMUSG00000059897.6	ENSMUST00000212312.2	493	3	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_2	43	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCATAAAAGAACACACACTG	7208	False	NA	NA	False	NA	NA	NA	69661697	69680746	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_69661812_69678994_69679122_69680494
transcript_90015.nnic	chr8	+	5378	5	NIC	ENSMUSG00000079038.4	novel	2002	6	NA	NA	-9	3620	combination_of_known_splicesites	FALSE	canonical	2	14	junction_4	0.82915619758885	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATAATAATAAAAATC	7138	False	NA	NA	False	NA	NA	NA	69723722	69759647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_69723844_69743913_69743975_69752904_69753032_69753409_69753474_69754642
transcript_90017.known	chr8	+	508	4	FSM	ENSMUSG00000079038.4	ENSMUST00000212443.2	508	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	7.54247233265651	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGCCTTGAGTATCCCCA	7153	False	NA	NA	False	NA	NA	NA	69723737	69766859	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_69723844_69743913_69743975_69759831_69759895_69766581
transcript_90026.known	chr8	-	7778	5	FSM	ENSMUSG00000110444.3	ENSMUST00000213012.2	7778	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	16.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATCCTAACTCAAA	NA	False	NA	NA	False	NA	NA	NA	69848174	69819161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_69826560_69827709_69827771_69827957_69828085_69829137_69829248_69848092
transcript_90028.known	chr8	-	928	1	FSM	ENSMUSG00000110444.3	ENSMUST00000211874.2	928	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	69848191	69847263	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_69847300_69848200
transcript_9003.known	chr10	-	2710	5	FSM	ENSMUSG00000019979.13	ENSMUST00000161987.8	2710	5	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_4	12.1449578014911	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATGATTAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	90918291	90901253	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_90903127_90913395_90913594_90915308_90915499_90915748_90915951_90918044
transcript_90032.nnic	chr8	-	2485	5	NNC	ENSMUSG00000060427.16	novel	2259	5	NA	NA	332	203	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_4	46.3215662515852	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGTGCCTCCCATACTTT	NA	False	NA	-25	True	NA	NA	NA	70077864	70063304	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_70065107_70066044_70066106_70066398_70066526_70071964_70072323_70077727
transcript_90033.known	chr8	-	2259	5	FSM	ENSMUSG00000060427.16	ENSMUST00000121886.8	2259	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_4	33.7083075813663	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTTATTACTTAGTACTC	NA	False	NA	-6	True	AATAAA	-23	NA	70078199	70063507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70065107_70066044_70066106_70066398_70066526_70071964_70072323_70078085
transcript_90038.known	chr8	-	914	2	FSM	ENSMUSG00000060427.16	ENSMUST00000140522.2	914	2	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAAAACAC	NA	False	NA	NA	False	NA	NA	NA	70078196	70071519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70072323_70078085
transcript_90040.known	chr8	-	882	5	FSM	ENSMUSG00000054648.9	ENSMUST00000238460.2	882	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	33.4542598184446	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACTGGAAAAAAACTCTAT	NA	False	NA	NA	False	NA	NA	NA	70169136	70160051	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70160345_70160760_70160822_70160988_70161116_70163335_70163635_70169034
transcript_90041.known	chr8	-	3180	5	FSM	ENSMUSG00000054648.9	ENSMUST00000238418.2	3180	5	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_4	9.33742469849155	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTGTCAATGTATTTT	NA	False	NA	0	True	NA	NA	NA	70169552	70157786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70160345_70160760_70160822_70160988_70161116_70163335_70163635_70169417
transcript_90043.known	chr8	+	3915	26	FSM	ENSMUSG00000031862.12	ENSMUST00000034326.7	3915	26	0	0	0	0	multi-exon	TRUE	canonical	3	203	junction_10	47.3625337160081	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGCTGCCACTTATATCT	9164	False	NA	NA	False	AATAAA	-23	NA	70243812	70260399	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70244292_70246398_70246489_70246579_70246771_70249228_70249302_70249479_70249636_70249731_70249802_70249874_70249982_70250356_70250487_70250590_70250647_70251036_70251164_70251233_70251372_70251461_70251583_70251970_70252129_70252411_70252588_70252661_70252773_70253551_70253678_70254683_70254793_70256109_70256310_70256389_70256487_70257869_70258028_70258097_70258213_70258295_70258493_70259410_70259554_70259646_70259759_70259841_70259986_70260068
transcript_90052.known	chr8	-	3245	4	FSM	ENSMUSG00000043090.19	ENSMUST00000137573.2	3245	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	2.44948974278318	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAAAACAAAAACAAC	6869	False	NA	NA	False	NA	NA	NA	70227561	70216492	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70219428_70220282_70220344_70221770_70221898_70227439
transcript_90053.known	chr8	-	2291	4	FSM	ENSMUSG00000092260.8	ENSMUST00000130458.8	2291	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	1.24721912892465	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAATTTGGAAAAGGTATCA	9672	False	NA	NA	False	AATAAA	-16	NA	70202612	70194288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70196261_70196841_70196903_70197110_70197238_70202481
transcript_90057.nnic	chr8	-	463	2	Antisense	novelGene_ENSMUSG00000036246.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTGGCACACACCTTTAA	NA	False	NA	NA	False	ATTAAA	-22	NA	70266953	70265955	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr8_-_70266112_70266646
transcript_90059.known	chr8	+	5837	3	FSM	ENSMUSG00000031861.17	ENSMUST00000034325.6	5837	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAGTGAAGTTGTTTCTT	334	False	NA	NA	False	NA	NA	NA	70275078	70283752	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70275362_70276203_70276946_70278940
transcript_9006.known	chr10	-	1596	5	FSM	ENSMUSG00000019979.13	ENSMUST00000160788.2	1596	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	28.2345090270754	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTGGTGAGTGGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	90918632	90902751	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_90903127_90913395_90913594_90915308_90915499_90915748_90915994_90918044
transcript_90060.known	chr8	+	1350	2	FSM	ENSMUSG00000031861.17	ENSMUST00000238452.2	1350	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCCCCAGCCTTTCTTCA	489	False	NA	NA	False	NA	NA	NA	70275233	70277425	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70275362_70276203
transcript_90062.known	chr8	+	1560	8	FSM	ENSMUSG00000031860.18	ENSMUST00000081503.13	1560	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	14.9543523116591	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGTTTTCAATACAG	2073	False	NA	5	True	ATTAAA	-18	NA	70285140	70324942	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70285502_70311729_70311804_70316961_70317201_70317473_70317665_70319117_70319254_70322678_70322833_70323227_70323335_70324644
transcript_90064.nic	chr8	+	1141	7	NIC	ENSMUSG00000031860.18	novel	1560	8	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_3	12.3659478676997	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGTTTTCAATACAG	2253	False	NA	5	True	ATTAAA	-18	NA	70285320	70324942	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_70285502_70311729_70311804_70317473_70317665_70319117_70319254_70322678_70322833_70323227_70323335_70324644
transcript_90065.known	chr8	+	1101	7	FSM	ENSMUSG00000031860.18	ENSMUST00000156319.8	1101	7	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_2	13.7446959466795	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGTTTTCAATACAG	2219	False	NA	5	True	ATTAAA	-18	NA	70285286	70324942	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70285502_70311729_70311804_70317547_70317665_70319117_70319254_70322678_70322833_70323227_70323335_70324644
transcript_90071.known	chr8	+	931	6	FSM	ENSMUSG00000031860.18	ENSMUST00000134777.10	931	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	11.2178429299041	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGTTTTCAATACAG	2272	False	NA	5	True	ATTAAA	-18	NA	70285339	70324942	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70285502_70311729_70311804_70319117_70319254_70322678_70322833_70323227_70323335_70324644
transcript_90074.nic	chr8	+	796	5	NIC	ENSMUSG00000031860.18	novel	931	6	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_3	14.9059551857638	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGTTTTCAATACAG	2253	False	NA	5	True	ATTAAA	-18	NA	70285320	70324942	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_70285502_70311729_70311804_70319117_70319254_70323227_70323335_70324644
transcript_90075.known	chr8	+	823	5	FSM	ENSMUSG00000031860.18	ENSMUST00000132899.8	823	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	15.6744218394172	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGTTTTCAATACAG	2244	False	NA	5	True	ATTAAA	-18	NA	70285311	70324942	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70285502_70311729_70311804_70322678_70322833_70323227_70323335_70324644
transcript_90076.nic	chr8	+	835	4	NIC	ENSMUSG00000031860.18	novel	823	5	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_2	13.4246870437348	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGTTTTCAATACAG	2078	False	NA	5	True	ATTAAA	-18	NA	70285145	70324942	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_70285502_70311729_70311804_70323227_70323335_70324644
transcript_9009.known	chr10	+	3232	3	FSM	ENSMUSG00000019975.13	ENSMUST00000020149.6	3232	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	27	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAGAGAGTACTGTCCAT	755	False	NA	13	True	AATAAA	-19	NA	90918918	90934519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_90919159_90929000_90929119_90931645
transcript_9010.known	chr10	+	1328	3	FSM	ENSMUSG00000019975.13	ENSMUST00000020150.10	1328	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	32.5	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTATTTTGCTCCATAAT	638	False	NA	12	True	AATAAA	-17	NA	90918801	90938469	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_90919159_90929000_90929119_90937616
transcript_90100.known	chr8	-	785	6	FSM	ENSMUSG00000048967.17	ENSMUST00000152938.9	785	6	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_5	7.28285658241325	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGCCTCTTTTGTGTA	6664	False	NA	0	True	AATAAA	-16	NA	70346625	70340437	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70340673_70341636_70341788_70341858_70341973_70342092_70342204_70343515_70343625_70346560
transcript_90101.known	chr8	-	3363	13	FSM	ENSMUSG00000036180.16	ENSMUST00000116463.4	3363	13	0	0	0	0	multi-exon	FALSE	canonical	3	580	junction_12	181.0697187703	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCACCTGTGTGGAAATC	NA	False	NA	-24	True	AATAAA	-17	NA	70426921	70361305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70362625_70364326_70364520_70364813_70364889_70365572_70365875_70367168_70367449_70368933_70369099_70369218_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70426739
transcript_90102.known	chr8	-	3622	13	FSM	ENSMUSG00000036180.16	ENSMUST00000212478.2	3622	13	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_12	239.231916186412	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTCACCTGTGTGGAAAT	NA	False	NA	-25	True	AATAAA	-16	NA	70449034	70361306	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70362625_70364326_70364520_70364813_70364889_70365572_70365875_70367168_70367449_70368933_70369099_70369218_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70448592
transcript_90103.nnic	chr8	+	2190	15	NNC	ENSMUSG00000011306.8	novel	2681	14	NA	NA	-44	-392	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	133.476685268267	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCAGCATTCCAGTTCCT	2113	False	NA	11	True	ATTAAA	-16	NA	70495418	70524605	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_70495528_70495670_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70523910_70524171_70524302_70524455
transcript_90110.known	chr8	+	2681	14	FSM	ENSMUSG00000011306.8	ENSMUST00000011450.8	2681	14	0	0	0	0	multi-exon	FALSE	canonical	3	384	junction_4	56.2515483021626	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTGCTCCTCTGGTCTTC	2157	False	NA	NA	False	GATAAA	-14	NA	70495462	70524997	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70523910_70524171_70524302_70524455
transcript_90111.known	chr8	+	2963	8	FSM	ENSMUSG00000011306.8	ENSMUST00000211808.2	2963	8	0	0	0	0	multi-exon	FALSE	canonical	3	384	junction_4	42.1644012728021	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGAAAGGCTGTCTGTGT	2378	False	NA	NA	False	CATAAA	-19	NA	70495683	70519561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486
transcript_90112.known	chr8	+	1446	10	FSM	ENSMUSG00000036151.16	ENSMUST00000110160.9	1446	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.28620410031003	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTGTTTCGGGGAGCTGG	NA	False	NA	NA	False	AATAAA	-29	NA	70525573	70532716	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70525740_70526927_70527032_70527981_70528080_70528149_70528254_70528650_70528734_70530039_70530165_70530530_70530633_70530959_70531053_70531454_70531575_70532265
transcript_90125.known	chr8	+	1161	5	FSM	ENSMUSG00000071078.7	ENSMUST00000095273.7	1161	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	248.840310239318	5163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAACCAAACACCCCA	461	False	NA	9	True	NA	NA	NA	70583996	70586389	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70584250_70584567_70584659_70585061_70585168_70585236_70585305_70585746
transcript_90126.known	chr8	+	1078	4	FSM	ENSMUSG00000071078.7	ENSMUST00000211898.2	1078	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	271.261661295674	1141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACACCCCATTTGTGGTA	447	False	NA	18	True	NA	NA	NA	70583982	70586398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70584250_70584567_70584659_70585236_70585305_70585746
transcript_90127.known	chr8	+	1507	3	FSM	ENSMUSG00000071078.7	ENSMUST00000212851.2	1507	3	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	269.5	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACCCCATTTGTGGTAC	461	False	NA	19	True	NA	NA	NA	70583996	70586399	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70584250_70584567_70584659_70585236
transcript_90128.known	chr8	-	1121	9	FSM	ENSMUSG00000036120.11	ENSMUST00000212320.2	1121	9	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_5	20.7590341779188	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCAGGGTGCCTCCCA	9603	False	NA	2	True	AATAAA	-18	NA	70591746	70585915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70586114_70586875_70586957_70587261_70587329_70587688_70587815_70587940_70588042_70588185_70588282_70588859_70588941_70590678_70590874_70591570
transcript_9015.known	chr10	-	1612	8	FSM	ENSMUSG00000061904.13	ENSMUST00000076694.13	1612	8	0	0	0	0	multi-exon	FALSE	canonical	1	1248	junction_7	1021.77973983373	14046	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTAGTTTTATTTTTTTGA	NA	False	NA	0	True	ATTAAA	-18	NA	90959921	90952435	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419_90959569_90959777
transcript_90157.known	chr8	+	1312	9	FSM	ENSMUSG00000079033.11	ENSMUST00000110143.8	1312	9	0	0	0	0	multi-exon	TRUE	canonical	3	113	junction_6	45.467021015237	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATCTCCTCAAAGATCT	8589	False	NA	5	True	NA	NA	NA	70605427	70620138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70605495_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619047_70619263_70619349_70619468_70619557_70619715
transcript_9016.known	chr10	-	1341	8	FSM	ENSMUSG00000061904.13	ENSMUST00000170810.8	1341	8	0	0	0	0	multi-exon	FALSE	canonical	1	85	junction_6	1787.71823557179	743	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTATGAGTTTGTTATT	NA	False	NA	-5	True	AATAAA	-15	NA	90959865	90952653	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90958068_90958194_90959419_90959569_90959777
transcript_90161.known	chr8	+	1342	9	FSM	ENSMUSG00000079033.11	ENSMUST00000110146.9	1342	9	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_6	49.3303595669036	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATCTCCTCAAAGATCT	8589	False	NA	5	True	NA	NA	NA	70605427	70620138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70605495_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619077_70619263_70619349_70619468_70619557_70619715
transcript_90165.nnic	chr8	+	1585	9	NNC	ENSMUSG00000079033.11	novel	1337	9	NA	NA	5774	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	77.3801492632316	84	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATCTCCTCAAAGATCT	496	False	NA	5	True	NA	NA	NA	70611204	70620138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_70611545_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619047_70619263_70619349_70619468_70619557_70619715
transcript_90166.nnic	chr8	+	1615	9	NNC	ENSMUSG00000079033.11	novel	1337	9	NA	NA	5774	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	79.2668554630496	85	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATCTCCTCAAAGATCT	496	False	NA	5	True	NA	NA	NA	70611204	70620138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_70611545_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619077_70619263_70619349_70619468_70619557_70619715
transcript_90169.known	chr8	+	1223	8	FSM	ENSMUSG00000079033.11	ENSMUST00000110140.2	1223	8	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_6	83.5031467083971	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCAATCTCCTCAAAGATC	8592	False	NA	4	True	NA	NA	NA	70605430	70620137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70605495_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619047_70619468_70619557_70619715
transcript_9017.known	chr10	-	1483	7	FSM	ENSMUSG00000061904.13	ENSMUST00000164505.2	1483	7	0	0	0	0	multi-exon	FALSE	canonical	3	3785	junction_3	269.875073979713	810	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCATCTATTCCTGATGT	NA	False	NA	-21	True	NA	NA	NA	90959817	90952669	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419
transcript_90171.known	chr8	+	1253	8	FSM	ENSMUSG00000079033.11	ENSMUST00000110141.9	1253	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	84.1783820229398	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCAATCTCCTCAAAGATC	8592	False	NA	4	True	NA	NA	NA	70605430	70620137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70605495_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619077_70619468_70619557_70619715
transcript_9018.known	chr10	-	1395	8	FSM	ENSMUSG00000061904.13	ENSMUST00000163246.8	1395	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1829.96665521087	845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	-4	True	AATAAA	-16	NA	90959819	90952652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957969_90958194_90959419_90959569_90959777
transcript_90180.known	chr8	+	810	6	FSM	ENSMUSG00000002345.19	ENSMUST00000002418.15	810	6	0	0	0	0	multi-exon	TRUE	canonical	3	86	junction_5	44.6183818621877	850	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAACCGTCTCTTTCCATG	8613	False	NA	17	True	AATACA	-11	NA	70592148	70599906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70592423_70594513_70594627_70595123_70595189_70597673_70597785_70598460_70598541_70599739
transcript_90186.known	chr8	+	756	4	FSM	ENSMUSG00000002345.19	ENSMUST00000123976.2	756	4	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_1	5.79271573232759	869	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTCGAGCCTCAGCCAGC	8821	False	NA	11	True	AATAAA	-11	NA	70592356	70598185	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70592423_70594513_70594627_70595123_70595189_70597673
transcript_9019.known	chr10	-	471	2	FSM	ENSMUSG00000019961.18	ENSMUST00000213270.2	471	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGGGATTTATCTTCTA	NA	False	NA	NA	False	ATTAAA	-27	NA	91016979	91014811	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_91015032_91016728
transcript_90192.known	chr8	+	3018	12	FSM	ENSMUSG00000002342.18	ENSMUST00000002413.15	3018	12	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	38.6768771547844	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGGATCCTTATCTTTT	5866	False	NA	NA	False	AATAAA	-44	NA	70625054	70636331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70625091_70626952_70627057_70629494_70629576_70629890_70629989_70630101_70630259_70631516_70631669_70633188_70633250_70633355_70633500_70633585_70633700_70633798_70633974_70634079_70634177_70634532
transcript_90194.known	chr8	+	2080	11	FSM	ENSMUSG00000002342.18	ENSMUST00000182980.8	2080	11	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	59.2504008425259	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTGCCTTACCATGGTG	5869	False	NA	7	True	AATAAA	-17	NA	70625057	70635500	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70625091_70629494_70629576_70629890_70629989_70630101_70630259_70631516_70631669_70633188_70633250_70633355_70633500_70633585_70633700_70633798_70633974_70634079_70634177_70634532
transcript_9020.known	chr10	-	1854	8	FSM	ENSMUSG00000019961.18	ENSMUST00000092219.14	1854	8	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_4	263.470092792177	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGATTTATGACTTATT	NA	False	NA	-7	True	ATTAAA	-18	NA	91007430	90984977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_90985621_90987570_90987660_90988489_90988601_90988946_90989043_90994609_90994708_90999904_91000064_91001804_91001932_91006899
transcript_90202.known	chr8	-	3196	8	FSM	ENSMUSG00000002346.17	ENSMUST00000110127.8	3196	8	0	0	0	0	multi-exon	FALSE	canonical	2	20	junction_2	5.41728149310244	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCTTCTTACTTCTTCA	NA	False	NA	NA	False	AATAAA	-13	NA	70664955	70636989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70639427_70640949_70641102_70641482_70641600_70642060_70642228_70642712_70642739_70644510_70644617_70646773_70646887_70664877
transcript_90209.nic	chr8	-	2061	8	NIC	ENSMUSG00000002343.12	novel	2263	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_7	30.2722341967901	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAATAAGTGAGTGTAAT	5008	False	NA	-26	True	NA	NA	NA	70686776	70672847	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_70673528_70674755_70674894_70675167_70675300_70676193_70676340_70677549_70678124_70682177_70682261_70683929_70684057_70686595
transcript_90210.known	chr8	-	2263	8	FSM	ENSMUSG00000002343.12	ENSMUST00000019679.12	2263	8	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	11.6741472616082	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTCATTTTTCTCACCT	4668	False	NA	0	True	TTTAAA	-1	NA	70687116	70672821	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70673528_70674755_70674894_70675167_70675300_70676193_70676340_70677549_70678124_70682177_70682261_70683929_70684057_70686759
transcript_90215.nic	chr8	-	1385	5	ISM	ENSMUSG00000002343.12	ENSMUST00000019679.12	2263	8	15	3259	-2	-245	5prime_fragment	FALSE	canonical	3	75	junction_4	11.8822346383161	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTAGGGTCGTGGTTCTT	4683	False	NA	NA	False	AATGAA	-16	NA	70687101	70676080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_70676340_70677549_70678124_70682177_70682261_70683929_70684057_70686759
transcript_90216.known	chr8	-	547	4	FSM	ENSMUSG00000002343.12	ENSMUST00000130319.2	547	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	44.5645599103144	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGCTGCCACTAGCAACCA	5008	False	NA	NA	False	NA	NA	NA	70686776	70677967	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70678124_70682177_70682261_70683929_70684057_70686595
transcript_90217.known	chr8	-	1414	4	FSM	ENSMUSG00000002343.12	ENSMUST00000135931.2	1414	4	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_3	12.0830459735946	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGAGCCTTGTCTGCCTTG	4685	False	NA	NA	False	AATAGA	-16	NA	70687099	70677259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70678124_70682177_70682261_70683929_70684057_70686759
transcript_90218.nic	chr8	+	2292	3	ISM	ENSMUSG00000036054.16	ENSMUST00000136758.2	3517	6	-56	10194	-50	1666	5prime_fragment	FALSE	canonical	3	101	junction_1	11.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAAAGGTTTCTCTGTGT	1433	False	NA	NA	False	NA	NA	NA	70687216	70697219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_70687303_70689317_70689445_70695140
transcript_90219.nic	chr8	+	760	2	ISM	ENSMUSG00000036054.16	ENSMUST00000129402.2	448	3	4485	-1	4485	0	3prime_fragment	FALSE	canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAGGGTCTTACTATGTA	6546	False	NA	NA	False	NA	NA	NA	70730726	70732565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_70731213_70732291
transcript_9022.known	chr10	-	3534	15	FSM	ENSMUSG00000019988.8	ENSMUST00000020163.7	3534	15	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_9	20.2858400398517	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAGTCTGAGCTTGAACC	NA	False	NA	-1	True	AATAAA	-19	NA	92558282	92520607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_92522158_92522581_92522649_92525496_92525654_92526489_92526647_92527695_92527899_92528749_92528798_92530841_92530971_92534031_92534228_92534587_92534790_92536581_92536812_92547032_92547174_92549935_92550053_92552027_92552123_92555347_92555492_92558184
transcript_90220.known	chr8	+	511	4	FSM	ENSMUSG00000036054.16	ENSMUST00000133924.8	511	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_2	17.1723291631883	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCCGGCTCCTGTGCTGCC	8346	False	NA	26	True	AATAAA	-17	NA	70712401	70715755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70712470_70713118_70713240_70713880_70713968_70715520
transcript_90226.known	chr8	-	2137	13	FSM	ENSMUSG00000057788.14	ENSMUST00000008004.10	2137	13	0	0	0	0	multi-exon	TRUE	canonical	3	250	junction_9	19.6148682268211	784	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGGAATCCAATAGCTAC	9931	False	NA	-24	True	NA	NA	NA	70755139	70745515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70746338_70746477_70746550_70746648_70746738_70747336_70747412_70748016_70748115_70748224_70748302_70749032_70749109_70749552_70749694_70749780_70749969_70750525_70750648_70750730_70750817_70753628_70753753_70754972
transcript_90230.known	chr8	-	2163	13	FSM	ENSMUSG00000057788.14	ENSMUST00000144890.8	2163	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	78.7772439646543	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGTACTGAGTTTGGAAT	9968	False	NA	-35	True	NA	NA	NA	70755102	70745526	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70746338_70746477_70746550_70746648_70746738_70747336_70747486_70748016_70748115_70748224_70748302_70749032_70749109_70749552_70749694_70749780_70749969_70750525_70750648_70750730_70750817_70753628_70753753_70754972
transcript_90237.known	chr8	+	2445	10	FSM	ENSMUSG00000003573.16	ENSMUST00000110124.9	2445	10	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_9	38.9171326009065	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGGCTCCCTGAGAGGC	NA	False	NA	NA	False	AATAAA	-25	NA	70735648	70747011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70735751_70737883_70737966_70738043_70738201_70738580_70738713_70742043_70742152_70742701_70742824_70743656_70743814_70743967_70744079_70744166_70744254_70745624
transcript_90246.known	chr8	+	880	5	FSM	ENSMUSG00000003573.16	ENSMUST00000087467.12	880	5	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_4	81.1202810646018	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCCTTTTTTATTTGCTT	NA	False	NA	NA	False	ATTAAA	-9	NA	70735476	70739180	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70735751_70737883_70737966_70738043_70738201_70738580_70738713_70738945
transcript_9025.nic	chr10	-	403	2	ISM	ENSMUSG00000019988.8	ENSMUST00000216086.2	391	4	-27	8053	-11	-8053	5prime_fragment	FALSE	canonical	3	164	junction_1	0	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACTGATAAAAATAATCCAT	NA	False	NA	NA	False	NA	NA	NA	92558293	92555197	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_92555492_92558184
transcript_90252.known	chr8	+	1300	10	FSM	ENSMUSG00000055681.15	ENSMUST00000066469.14	1300	10	0	0	0	0	multi-exon	FALSE	canonical	3	1246	junction_3	49.1055803823899	8179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGCCTGATACCCACCA	452	False	NA	26	True	AATAAA	-15	NA	70755167	70765640	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70755583_70757283_70757347_70758284_70758386_70759148_70759302_70760599_70760654_70761144_70761227_70762985_70763142_70764277_70764347_70765355_70765431_70765508
transcript_90253.known	chr8	+	2753	8	FSM	ENSMUSG00000055681.15	ENSMUST00000134822.8	2753	8	0	0	0	0	multi-exon	FALSE	canonical	3	1283	junction_7	34.9203174588744	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCTGATACCCACCAGGC	703	False	NA	29	True	AATAAA	-18	NA	70755418	70765643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70755583_70757283_70759302_70760599_70760654_70761144_70761227_70762985_70763142_70764277_70764347_70765355_70765431_70765508
transcript_90254.known	chr8	+	2429	2	FSM	ENSMUSG00000055681.15	ENSMUST00000128822.2	2429	2	0	0	0	0	multi-exon	FALSE	canonical	3	1353	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGCAAG	727	False	NA	NA	False	TTTAAA	-8	NA	70755442	70759572	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70755583_70757283
transcript_90255.known	chr8	+	433	4	FSM	ENSMUSG00000055681.15	ENSMUST00000167850.3	433	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	613.708399812158	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGCCTGATACCCACCA	2895	False	NA	26	True	AATAAA	-15	NA	70761156	70765640	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70761227_70762985_70763142_70765355_70765431_70765508
transcript_90256.known	chr8	+	1349	2	FSM	ENSMUSG00000109523.2	ENSMUST00000207684.2	1349	2	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGCGTTGGCGCAGGTGTG	5118	False	NA	NA	False	AAAAAG	-33	NA	70782466	70784237	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70782927_70783348
transcript_90258.known	chr8	-	5683	14	FSM	ENSMUSG00000003575.14	ENSMUST00000076615.6	5683	14	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_8	14.7616166270428	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCCTCTTCCTCTTTTTC	5213	False	NA	-4	True	AATAAA	-18	NA	70892229	70835004	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70838986_70840190_70840372_70840724_70840812_70843851_70843954_70844510_70844814_70845571_70845706_70850395_70850605_70850945_70850987_70853268_70853355_70855080_70855176_70857908_70857971_70858727_70858866_70861544_70861662_70892082
transcript_9026.nic	chr10	-	999	4	ISM	ENSMUSG00000020014.19	ENSMUST00000168080.8	1160	5	-64	3785	-64	1841	5prime_fragment	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTGTATTATTATTATTA	NA	False	NA	NA	False	AATACA	-17	NA	92917544	92900783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_92901115_92902568_92902713_92905690_92905797_92917126
transcript_90263.nnic	chr8	-	886	5	NNC	ENSMUSG00000003575.14	novel	870	4	NA	NA	-112	536	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	30.8261252835967	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATATAGTAACTGCACACA	5101	False	NA	-15	True	NA	NA	NA	70892341	70856962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_70857273_70857908_70857971_70858727_70858866_70861544_70861662_70892082
transcript_90266.nnic	chr8	-	779	5	NNC	ENSMUSG00000003575.14	novel	870	4	NA	NA	-112	536	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	29.1247317584214	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATATAGTAACTGCACACA	5101	False	NA	-15	True	NA	NA	NA	70892341	70856962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_70857166_70857908_70857971_70858727_70858866_70861544_70861662_70892082
transcript_90267.nnic	chr8	-	1032	5	NNC	ENSMUSG00000003575.14	novel	870	4	NA	NA	-112	536	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	29.1247317584214	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATATAGTAACTGCACACA	5101	False	NA	-15	True	NA	NA	NA	70892341	70856962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_70857419_70857908_70857971_70858727_70858866_70861544_70861662_70892082
transcript_9027.known	chr10	+	472	3	FSM	ENSMUSG00000111013.2	ENSMUST00000214288.2	472	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGATGCAGAGGCCACGGA	NA	False	NA	NA	False	NA	NA	NA	92921112	92929219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_92921149_92927698_92927814_92928898
transcript_90272.known	chr8	-	870	4	FSM	ENSMUSG00000003575.14	ENSMUST00000125613.8	870	4	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	6.48074069840786	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTGTTCCCCAATGCG	5217	False	NA	NA	False	NA	NA	NA	70892225	70857498	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70857971_70858727_70858866_70861544_70861662_70892082
transcript_90276.known	chr8	-	2991	3	FSM	ENSMUSG00000055707.14	ENSMUST00000066597.13	2991	3	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	2	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATGGAGCAGACCTGTGCT	NA	False	NA	-18	True	AATAAA	-16	NA	70929555	70902917	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70905670_70908115_70908299_70929499
transcript_9028.known	chr10	-	4212	5	FSM	ENSMUSG00000008398.17	ENSMUST00000008542.12	4212	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_3	2.48746859276655	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTTTGTTCCCTTCCATT	NA	False	NA	NA	False	AATAAA	-33	NA	93146997	93083275	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_93085971_93090550_93090674_93100741_93101543_93120630_93120840_93146613
transcript_90283.known	chr8	-	632	4	FSM	ENSMUSG00000058833.12	ENSMUST00000133683.8	632	4	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_3	338.518340222013	1832	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCCCATCAGCTCTGTA	NA	False	NA	-8	True	AATAAA	-17	NA	70959076	70956944	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70957160_70957633_70957711_70958405_70958611_70958941
transcript_90284.known	chr8	-	671	5	FSM	ENSMUSG00000058833.12	ENSMUST00000136913.2	671	5	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	340.250918441082	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCTTTCCCATCAGCTC	NA	False	NA	-12	True	AATAAA	-13	NA	70959387	70956948	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70957179_70957633_70957711_70958405_70958611_70959146_70959230_70959311
transcript_90285.known	chr8	-	725	4	FSM	ENSMUSG00000058833.12	ENSMUST00000135773.8	725	4	0	0	0	0	multi-exon	FALSE	canonical	3	774	junction_3	46.3968389727864	616	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCATCAGCTCTGTATCT	NA	False	NA	-5	True	AATAAA	-20	NA	70959371	70956941	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70957160_70957633_70957711_70958405_70958611_70959146
transcript_90286.known	chr8	-	572	2	FSM	ENSMUSG00000058833.12	ENSMUST00000143598.8	572	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCCCATCAGCTCTGTA	NA	False	NA	-8	True	AATAAA	-17	NA	70958762	70956944	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70957160_70958405
transcript_90290.known	chr8	+	1799	9	FSM	ENSMUSG00000019428.17	ENSMUST00000119698.8	1799	9	0	0	0	0	multi-exon	FALSE	canonical	3	550	junction_1	286.852068800279	1252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCTTTCTAGGCCTCTTT	NA	False	NA	26	True	AATAAA	-18	NA	70980495	70987977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70980686_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70984393_70985226_70985400_70986766_70986845_70987132_70987265_70987516
transcript_90309.known	chr8	-	992	5	FSM	ENSMUSG00000055553.17	ENSMUST00000118850.8	992	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	297.008733036589	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGTGGAGTACTTTTTT	NA	False	NA	NA	False	NA	NA	NA	70975929	70966253	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70966819_70968044_70968092_70971014_70971168_70972586_70972712_70975827
transcript_9031.known	chr10	+	585	2	FSM	ENSMUSG00000111531.2	ENSMUST00000213849.2	585	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCGTGTTAGTTAATTTT	7917	False	NA	NA	False	NA	NA	NA	93153264	93158587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_93153596_93158333
transcript_90315.known	chr8	-	697	4	FSM	ENSMUSG00000090137.9	ENSMUST00000140679.8	697	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	10633.6606532694	15730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTCTAGAGTGACTGT	NA	False	NA	-4	True	AATAAA	-28	NA	70963000	70960912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70961179_70961945_70962033_70962170_70962282_70962767
transcript_90318.known	chr8	-	520	4	FSM	ENSMUSG00000090137.9	ENSMUST00000135446.8	520	4	0	0	0	0	multi-exon	FALSE	canonical	3	602	junction_3	10349.9061616787	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTCATACCTGGCATGTG	NA	False	NA	-69	True	AATAAA	-4	NA	70963451	70960977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70961179_70961945_70962033_70962170_70962285_70963333
transcript_9032.known	chr10	+	1692	3	FSM	ENSMUSG00000110647.3	ENSMUST00000212186.3	1692	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGGTGAGTTGCATTTGT	9135	False	NA	NA	False	NA	NA	NA	93171254	93184739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_93172204_93183920_93184065_93184140
transcript_90325.known	chr8	-	1216	5	FSM	ENSMUSG00000055553.17	ENSMUST00000093456.12	1216	5	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_4	146.224784150978	2704	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTATAGCAACAGTGGCT	NA	False	NA	-13	True	AATAAA	-20	NA	70975830	70966045	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70966819_70968044_70968092_70971014_70971168_70972586_70972712_70975712
transcript_90326.known	chr8	-	541	4	FSM	ENSMUSG00000090137.9	ENSMUST00000081940.11	541	4	0	0	0	0	multi-exon	FALSE	canonical	3	1892	junction_3	9741.86690983247	23780	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGGTGTCTAGAGTGAC	NA	False	NA	-7	True	AATAAA	-25	NA	70963067	70960915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70961179_70961945_70962033_70962170_70962282_70962987
transcript_90327.known	chr8	-	884	7	FSM	ENSMUSG00000055553.17	ENSMUST00000121623.8	884	7	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	10409.9140993361	8685	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCAGTAATTGGTGTCTAG	NA	False	NA	-13	True	AATAAA	-19	NA	70975813	70960921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70961179_70961945_70962033_70962170_70962285_70968044_70968092_70971014_70971168_70972586_70972712_70975712
transcript_90328.known	chr8	-	646	3	FSM	ENSMUSG00000090137.9	ENSMUST00000127793.2	646	3	0	0	0	0	multi-exon	FALSE	canonical	3	14257	junction_2	4054	3719	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGTGTCTAGAGTGACTG	NA	False	NA	-5	True	AATAAA	-27	NA	70963029	70960913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70961179_70961945_70962285_70962987
transcript_90329.known	chr8	+	1698	9	FSM	ENSMUSG00000019428.17	ENSMUST00000075491.14	1698	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	448.998590615828	2590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTTCTAGGCCTCTT	NA	False	NA	25	True	AATAAA	-17	NA	70980396	70987976	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70980487_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70984393_70985226_70985400_70986766_70986845_70987132_70987265_70987516
transcript_90330.known	chr8	-	1033	2	FSM	ENSMUSG00000055553.17	ENSMUST00000138586.2	1033	2	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	70975754	70971720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_70972712_70975712
transcript_90331.known	chr8	+	1235	2	FSM	ENSMUSG00000019428.17	ENSMUST00000128513.2	1235	2	0	0	0	0	multi-exon	FALSE	canonical	3	550	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAAGC	NA	False	NA	NA	False	AAAACA	-12	NA	70980658	70983248	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70980686_70982040
transcript_90332.known	chr8	+	3072	12	FSM	ENSMUSG00000070002.8	ENSMUST00000093454.8	3072	12	0	0	0	0	multi-exon	TRUE	canonical	3	95	junction_2	19.7818683154445	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTCTGTGGTTTGAGTAT	NA	False	NA	8	True	AATAAA	-16	NA	70992337	71045508	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_70992492_71025512_71025561_71031486_71031609_71031742_71031907_71034204_71034471_71036521_71036647_71037806_71037886_71038203_71038679_71043169_71043231_71043343_71043516_71044019_71044065_71044147
transcript_90333.known	chr8	+	1914	10	FSM	ENSMUSG00000019139.11	ENSMUST00000210005.2	1914	10	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_3	42.074302294634	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTTGTGTGCTTTTTC	NA	False	NA	20	True	AATAAA	-16	NA	71047130	71049940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71047399_71047472_71047635_71047788_71047922_71048010_71048205_71048354_71048505_71048599_71048816_71048897_71049063_71049145_71049260_71049343_71049562_71049646
transcript_90334.known	chr8	+	1836	11	FSM	ENSMUSG00000019139.11	ENSMUST00000019283.10	1836	11	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_1	49.1426495012225	652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCCTCCTTGTGTGCTTTT	NA	False	NA	18	True	AATAAA	-14	NA	71047130	71049938	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71047194_71047269_71047399_71047472_71047635_71047788_71047922_71048010_71048205_71048354_71048505_71048599_71048816_71048897_71049063_71049145_71049260_71049343_71049562_71049646
transcript_90335.known	chr8	+	1916	10	FSM	ENSMUSG00000019139.11	ENSMUST00000210878.2	1916	10	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_1	45.5894183087303	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCCTCCTTGTGTGCTTTT	NA	False	NA	18	True	AATAAA	-14	NA	71047139	71049938	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71047194_71047269_71047399_71047472_71047635_71047788_71048205_71048354_71048505_71048599_71048816_71048897_71049063_71049145_71049260_71049343_71049562_71049646
transcript_90340.known	chr8	-	1475	17	FSM	ENSMUSG00000070003.8	ENSMUST00000049908.11	1475	17	0	0	0	0	multi-exon	TRUE	canonical	3	428	junction_1	289.200298236361	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTACTGCTGATGTCT	NA	False	NA	-10	True	AATAAA	-17	NA	71060964	71050139	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_71050419_71050662_71050771_71050855_71050885_71051188_71051268_71051351_71051423_71051503_71051559_71051642_71051679_71051767_71051814_71052023_71052095_71052174_71052246_71052337_71052408_71052489_71052550_71053045_71053136_71054881_71054967_71055050_71055113_71055223_71055297_71060774
transcript_90341.known	chr8	-	1549	16	FSM	ENSMUSG00000070003.8	ENSMUST00000211134.2	1549	16	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_1	298.200603621119	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTTGGTACTGCTGATG	NA	False	NA	-13	True	AATAAA	-14	NA	71060952	71050142	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_71050419_71050662_71050771_71050855_71050885_71051188_71051268_71051351_71051423_71051503_71051559_71051642_71051814_71052023_71052095_71052174_71052246_71052337_71052408_71052489_71052550_71053045_71053136_71054881_71054967_71055050_71055113_71055223_71055297_71060774
transcript_90345.known	chr8	-	299	2	FSM	ENSMUSG00000070003.8	ENSMUST00000210305.2	299	2	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAATGCCATTCCGTTTT	NA	False	NA	-32	True	NA	NA	NA	71050588	71050161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_71050419_71050546
transcript_90346.known	chr8	+	1906	3	FSM	ENSMUSG00000049988.6	ENSMUST00000052437.6	1906	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATGCCCGGCTTCTGAAT	NA	False	NA	NA	False	NA	NA	NA	71069493	71074133	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71069677_71070211_71071015_71073213
transcript_90357.nnic	chr8	-	1521	3	NNC	ENSMUSG00000038508.8	novel	1380	3	NA	NA	-173	0	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_2	115.5	130	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCGTCTCAGTGACCTTG	481	False	NA	-6	True	AATAAA	-18	NA	71085279	71082042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_71082825_71083982_71084242_71084799
transcript_90360.known	chr8	-	1380	3	FSM	ENSMUSG00000038508.8	ENSMUST00000110103.2	1380	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	118	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGCGTCTCAGTGACCTT	654	False	NA	-7	True	AATAAA	-17	NA	71085106	71082043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_71082825_71083982_71084275_71084799
transcript_90365.known	chr8	-	4883	5	FSM	ENSMUSG00000056204.9	ENSMUST00000070173.9	4883	5	0	0	0	0	multi-exon	TRUE	canonical	3	150	junction_1	24.3554408705735	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGCATCCAGTGTCACCT	NA	False	NA	-5	True	AATAAA	-18	NA	71112388	71099084	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_71103436_71103831_71104065_71105054_71105172_71110077_71110131_71112259
transcript_90369.known	chr8	-	381	4	FSM	ENSMUSG00000056204.9	ENSMUST00000209768.2	381	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	77.1016644870049	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGGGCCGCGGCCGCTCCG	NA	False	NA	NA	False	NA	NA	NA	71112318	71103399	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_71103436_71103831_71104065_71110077_71110131_71112259
transcript_9038.known	chr10	+	2029	19	FSM	ENSMUSG00000015889.9	ENSMUST00000016033.9	2029	19	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_6	42.1416262935671	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTAAAGTGTCATTTTTG	NA	False	NA	21	True	AATACA	-20	NA	93289272	93320736	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_93289531_93295678_93295810_93297171_93297293_93300306_93300376_93301810_93301916_93302973_93303027_93304617_93304691_93304909_93305051_93306661_93306686_93307157_93307229_93307715_93307828_93308760_93308906_93310337_93310442_93310779_93310851_93314308_93314364_93316552_93316649_93318111_93318195_93318823_93318929_93320524
transcript_90394.known	chr8	+	925	5	FSM	ENSMUSG00000031848.16	ENSMUST00000034311.15	925	5	0	0	0	0	multi-exon	FALSE	canonical	3	2963	junction_1	310.191070148707	33921	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCTGTTCTTCTGCCTA	NA	False	NA	20	True	AATAAA	-20	NA	71125897	71131402	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71126108_71129204_71129247_71130427_71130527_71130603_71130785_71131009
transcript_90395.known	chr8	+	636	4	FSM	ENSMUSG00000031848.16	ENSMUST00000210987.2	636	4	0	0	0	0	multi-exon	FALSE	canonical	2	25	junction_2	1451.48498671763	8544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGAGCCAGCTGTTCTTC	NA	False	NA	14	True	AATAAA	-14	NA	71126081	71131396	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71126108_71129204_71129247_71130603_71130785_71131009
transcript_90396.known	chr8	+	365	4	FSM	ENSMUSG00000031848.16	ENSMUST00000146972.3	365	4	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_3	1493.32566962319	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCGGCGCTGGCCGAGGT	NA	False	NA	NA	False	NA	NA	NA	71126028	71130766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71126108_71129204_71129247_71130427_71130509_71130603
transcript_90397.known	chr8	+	375	2	FSM	ENSMUSG00000031848.16	ENSMUST00000153689.2	375	2	0	0	0	0	multi-exon	FALSE	canonical	3	3671	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCGGCGCTGGCCGAGGT	NA	False	NA	NA	False	NA	NA	NA	71130314	71130766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71130527_71130603
transcript_90398.known	chr8	+	1667	1	FSM	ENSMUSG00000071076.9	ENSMUST00000095267.8	1667	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	55	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGCTGTCCGCCTCCTT	NA	False	NA	34	True	AGTAAA	-16	NA	71151598	71153265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71151600_71153300
transcript_90399.known	chr8	+	1149	4	FSM	ENSMUSG00000095026.3	ENSMUST00000179347.3	1149	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	14.4299072146089	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGTAAAGTCTCACGATT	NA	False	NA	NA	False	CATAAA	-1	NA	71171191	71175281	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71171282_71173068_71173378_71174425_71174587_71174692
transcript_904.known	chr1	+	541	5	FSM	ENSMUSG00000056763.17	ENSMUST00000134716.2	541	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	43.2608367926465	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTTGCCAAGATGACAGT	NA	False	NA	NA	False	NA	NA	NA	10110047	10130216	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_10110105_10115300_10115410_10117648_10117752_10128944_10129049_10130048
transcript_9040.nic	chr10	+	2012	18	NIC	ENSMUSG00000015889.9	novel	2029	19	NA	NA	-65	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_16	100.405509988178	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAAAGTGTCATTTTTGG	NA	False	NA	22	True	AATACA	-21	NA	93289207	93320737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_+_93289531_93295678_93295810_93297171_93297293_93300306_93300376_93301810_93301916_93302973_93303027_93304617_93304691_93304909_93305051_93306661_93306686_93307157_93307229_93307715_93307828_93308760_93308906_93310337_93310442_93310779_93310851_93314308_93314364_93316552_93316649_93318823_93318929_93320524
transcript_90402.known	chr8	+	842	3	FSM	ENSMUSG00000095026.3	ENSMUST00000213065.2	842	3	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	4.5	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTAAAGTCTCACGATTCA	NA	False	NA	NA	False	CATAAA	-3	NA	71171191	71175283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71171282_71174425_71174587_71174692
transcript_90403.known	chr8	+	1363	5	FSM	ENSMUSG00000031840.15	ENSMUST00000034301.12	1363	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	7.43303437365925	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACACGCAGTCCTTGACAT	NA	False	NA	46	True	NA	NA	NA	71207359	71211281	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71207513_71208502_71208731_71209093_71209213_71209783_71209909_71210543
transcript_90405.known	chr8	+	1375	5	FSM	ENSMUSG00000031840.15	ENSMUST00000110090.8	1375	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	23.3492505233037	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACACGCAGTCCTTGACAT	NA	False	NA	46	True	NA	NA	NA	71207372	71211281	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71207513_71208477_71208731_71209093_71209213_71209783_71209909_71210543
transcript_90408.known	chr8	-	980	5	FSM	ENSMUSG00000035559.10	ENSMUST00000038626.10	980	5	0	0	0	0	multi-exon	FALSE	canonical	3	649	junction_3	27.2304976083802	1915	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTGCGTGTGGGTGGGTT	NA	False	NA	-2	True	ATTAAA	-17	NA	71213592	71211294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_71211671_71211754_71211884_71212036_71212114_71213013_71213185_71213365
transcript_90409.known	chr8	-	3165	16	FSM	ENSMUSG00000031834.16	ENSMUST00000034296.15	3165	16	0	0	0	0	multi-exon	TRUE	canonical	3	127	junction_15	21.8259784049498	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGTCTTTGGGGACTGG	NA	False	NA	-8	True	NA	NA	NA	71229357	71220819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_71221542_71221705_71221877_71221991_71222064_71222232_71222410_71222548_71222692_71223020_71223147_71223227_71223409_71223490_71223590_71223697_71223807_71223932_71224019_71224476_71224676_71224776_71224909_71224995_71225047_71225246_71225340_71227299_71227997_71229250
transcript_90414.known	chr8	-	746	3	FSM	ENSMUSG00000031834.16	ENSMUST00000146707.2	746	3	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_1	3.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGGTGAACACGCGCAGGA	NA	False	NA	NA	False	NA	NA	NA	71222308	71221283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_71221542_71221705_71221877_71221991
transcript_90415.known	chr8	-	980	7	FSM	ENSMUSG00000031838.11	ENSMUST00000222087.4	980	7	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_6	19.0065778087482	2514	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCTTTTTCCTAGAGTTG	NA	False	NA	-15	True	AATAAA	-18	NA	71219307	71215418	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_71215686_71215772_71215827_71216371_71216525_71217191_71217285_71217363_71217439_71217563_71217747_71219152
transcript_90418.nic	chr8	+	1422	5	ISM	ENSMUSG00000000791.10	ENSMUST00000000808.8	2873	16	8393	0	3626	0	3prime_fragment	FALSE	canonical	1	1	junction_3	3.08220700148449	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGCCGTCGTGGTGCACG	NA	False	NA	NA	False	AATAAA	-30	NA	71269485	71274068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_71269684_71269855_71269991_71271968_71272066_71272325_71272408_71273158
transcript_90419.nic	chr8	+	1325	4	ISM	ENSMUSG00000000791.10	ENSMUST00000212657.2	2741	15	8358	0	3626	0	3prime_fragment	FALSE	canonical	2	4	junction_3	2.05480466765633	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGCCGTCGTGGTGCACG	NA	False	NA	NA	False	AATAAA	-30	NA	71269485	71274068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_71269684_71269855_71269991_71272325_71272408_71273158
transcript_90420.known	chr8	-	2355	8	FSM	ENSMUSG00000002910.12	ENSMUST00000002989.11	2355	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	35.6330504688314	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCCGTCTTTTCATTTG	NA	False	NA	-1	True	AATAAA	-20	NA	71292364	71287772	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_71288639_71288863_71289022_71289501_71289665_71289753_71290011_71290087_71290191_71291337_71291486_71291622_71291690_71291771
transcript_90423.nic	chr8	-	1943	7	ISM	ENSMUSG00000002910.12	ENSMUST00000002989.11	2355	8	494	0	292	0	intron_retention	FALSE	canonical	0	0	junction_5	38.4476556141232	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCCGTCTTTTCATTTG	NA	False	NA	-1	True	AATAAA	-20	NA	71291870	71287772	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_71288639_71288863_71289022_71289501_71289665_71289753_71290011_71290087_71290191_71291337_71291486_71291622
transcript_90428.known	chr8	-	4047	10	FSM	ENSMUSG00000002908.18	ENSMUST00000110078.5	4047	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	11.7378779077727	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCTGTCTCAGTTTACCT	NA	False	NA	NA	False	NA	NA	NA	71309657	71294692	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_71297206_71299138_71299209_71299407_71299417_71300818_71300947_71301421_71301533_71303243_71303386_71305297_71305717_71307270_71307367_71307644_71308122_71309575
transcript_90433.nnic	chr8	+	1322	2	Antisense	novelGene_ENSMUSG00000002908.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	0	19	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATCAGGAATCCTCCTGCC	NA	False	NA	NA	False	NA	NA	NA	71304711	71306118	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr8_+_71305241_71305325
transcript_90435.nic	chr8	-	299	2	ISM	ENSMUSG00000002908.18	ENSMUST00000212414.2	613	3	-31	6565	-31	-6565	5prime_fragment	FALSE	canonical	3	18	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTAACTCGGCGGGAGGA	NA	False	NA	NA	False	NA	NA	NA	71315682	71314209	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_71314418_71315591
transcript_90466.known	chr8	-	393	5	FSM	ENSMUSG00000045128.10	ENSMUST00000212378.2	393	5	0	0	0	0	multi-exon	FALSE	canonical	2	350	junction_4	13656.4517422169	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACCAAGAGGCCCAACACC	NA	False	NA	-80	True	NA	NA	NA	71350043	71348087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_71348152_71348243_71348354_71348559_71348690_71348776_71348825_71350002
transcript_90472.known	chr8	-	700	5	FSM	ENSMUSG00000045128.10	ENSMUST00000212709.2	700	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	13791.0578727667	2246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTTGCTTGTTTGCTTC	NA	False	NA	-19	True	AATAAA	-11	NA	71349927	71348026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_71348152_71348243_71348354_71348559_71348690_71348776_71348957_71349772
transcript_90475.known	chr8	-	576	5	FSM	ENSMUSG00000045128.10	ENSMUST00000213053.2	576	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_4	13769.0618144447	645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACAGAGACCCACTGAATA	NA	False	NA	-51	True	NA	NA	NA	71350039	71348058	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_71348152_71348243_71348354_71348559_71348690_71348776_71348957_71349976
transcript_90476.known	chr8	-	578	5	FSM	ENSMUSG00000045128.10	ENSMUST00000212129.2	578	5	0	0	0	0	multi-exon	FALSE	canonical	1	58	junction_3	13957.9624766654	60960	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350044	71348022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_71348152_71348243_71348354_71348559_71348690_71348789_71348957_71350002
transcript_90498.known	chr8	-	795	4	FSM	ENSMUSG00000045128.10	ENSMUST00000212019.2	795	4	0	0	0	0	multi-exon	FALSE	canonical	3	16397	junction_3	7846.8208565989	1696	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350042	71348022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_71348152_71348243_71348690_71348776_71348957_71350002
transcript_905.known	chr1	+	637	4	FSM	ENSMUSG00000056763.17	ENSMUST00000191360.7	637	4	0	0	0	0	multi-exon	FALSE	canonical	2	35	junction_1	31.8363872880633	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAATATTAAAGGAGATTA	NA	False	NA	NA	False	NA	NA	NA	10108473	10129273	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_10108570_10115300_10115410_10117648_10117752_10128944
transcript_90500.known	chr8	-	679	4	FSM	ENSMUSG00000045128.10	ENSMUST00000212796.2	679	4	0	0	0	0	multi-exon	FALSE	canonical	3	16397	junction_3	7152.95244403782	672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350040	71348022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_71348354_71348559_71348690_71348776_71348957_71350002
transcript_90501.known	chr8	-	473	4	FSM	ENSMUSG00000045128.10	ENSMUST00000212494.2	473	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	8545.57961105558	1112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAAACTTGAGACTGTC	NA	False	NA	-35	True	NA	NA	NA	71350056	71348042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_71348152_71348559_71348690_71348776_71348957_71350002
transcript_9051.known	chr10	+	540	5	FSM	ENSMUSG00000015889.9	ENSMUST00000216931.2	540	5	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	198.438120077771	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAAAGTGTCATTTTTGG	736	False	NA	22	True	AATACA	-21	NA	93310779	93320737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_93310851_93314308_93314364_93316552_93316649_93318823_93318929_93320524
transcript_90513.known	chr8	+	3314	7	FSM	ENSMUSG00000019261.4	ENSMUST00000019405.4	3314	7	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_1	20.5236990384829	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTGGTCTTACTGTCTT	NA	False	NA	13	True	AATAAA	-13	NA	71358575	71370171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71358772_71363588_71363694_71364489_71364573_71365156_71365298_71365549_71367639_71368994_71369219_71369695
transcript_90518.nnic	chr8	+	1181	6	NIC	ENSMUSG00000019261.4	novel	3323	8	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	118.685129649843	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTCTTACTGTCTTAT	NA	False	NA	15	True	AATAAA	-15	NA	71358621	71370173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_71358772_71363588_71363694_71364489_71364573_71365156_71365298_71368994_71369219_71369695
transcript_9052.known	chr10	+	5319	20	FSM	ENSMUSG00000020017.15	ENSMUST00000129421.8	5319	20	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	3.06530942706548	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGCGTGTGGTTTACTTT	NA	False	NA	NA	False	AATAAA	-31	NA	93324629	93355166	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_93325240_93325735_93325797_93325901_93325930_93326608_93326684_93326776_93326850_93326960_93327028_93327671_93327710_93328314_93328441_93330472_93330613_93332444_93332493_93333336_93333485_93334620_93334717_93334817_93334877_93336478_93336560_93339123_93339190_93339265_93339432_93343276_93343412_93349895_93350005_93350120_93350191_93352043
transcript_90526.nnic	chr8	+	871	3	NIC	ENSMUSG00000019261.4	novel	4635	5	NA	NA	-23	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	161.5	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTCTTACTGTCTTAT	NA	False	NA	15	True	AATAAA	-15	NA	71358602	71370173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_71358772_71368994_71369219_71369695
transcript_90537.known	chr8	-	1452	11	FSM	ENSMUSG00000035439.14	ENSMUST00000110071.3	1452	11	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_7	129.467524885587	1223	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACAGTGTGATGCGTTTG	696	False	NA	-9	True	NA	NA	NA	71725020	71703768	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_71704189_71705714_71705899_71707164_71707307_71708050_71708210_71708290_71708357_71708651_71708765_71709102_71709196_71709999_71710070_71715695_71715749_71721869_71721929_71724927
transcript_90539.known	chr8	+	973	9	FSM	ENSMUSG00000002395.15	ENSMUST00000110054.8	973	9	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_1	224.605626599157	1814	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATGTCTTCAGTGCTAG	NA	False	NA	22	True	AATAAA	-23	NA	71819585	71822376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71819723_71819878_71820014_71820287_71820338_71820413_71820493_71820602_71820756_71821193_71821207_71821493_71821522_71821775_71821948_71822170
transcript_90551.known	chr8	+	1000	8	FSM	ENSMUSG00000002395.15	ENSMUST00000154550.8	1000	8	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	297.542656862947	2644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATGTCTTCAGTGCTAG	NA	False	NA	22	True	AATAAA	-23	NA	71819860	71822376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71820014_71820141_71820338_71820413_71820493_71820602_71820756_71821193_71821207_71821493_71821522_71821775_71821948_71822170
transcript_90562.known	chr8	+	854	8	FSM	ENSMUSG00000002395.15	ENSMUST00000019169.8	854	8	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_1	107.997165495683	4139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATGTCTTCAGTGCTAG	NA	False	NA	22	True	AATAAA	-23	NA	71819860	71822376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71820014_71820287_71820338_71820413_71820493_71820602_71820756_71821193_71821207_71821493_71821522_71821775_71821948_71822170
transcript_90563.known	chr8	+	691	5	FSM	ENSMUSG00000002395.15	ENSMUST00000146221.8	691	5	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_1	110.016760086816	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCTCTTTTGCTTCCAGAA	NA	False	NA	NA	False	AAGAAA	-19	NA	71819886	71821475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71820014_71820287_71820338_71820413_71820493_71820602_71820756_71821193
transcript_90564.known	chr8	+	930	7	FSM	ENSMUSG00000002395.15	ENSMUST00000143657.8	930	7	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_1	109.782613478739	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATGTCTTCAGTGCTAG	NA	False	NA	22	True	AATAAA	-23	NA	71819860	71822376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71820014_71820287_71820493_71820602_71820756_71821193_71821207_71821493_71821522_71821775_71821948_71822170
transcript_90565.known	chr8	+	895	5	FSM	ENSMUSG00000002395.15	ENSMUST00000140236.2	895	5	0	0	0	0	multi-exon	FALSE	canonical	3	802	junction_3	40.4042077016738	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATGTCTTCAGTGCTAG	NA	False	NA	22	True	AATAAA	-23	NA	71820423	71822376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71820493_71820602_71820756_71821193_71821207_71821493_71821948_71822170
transcript_90566.known	chr8	+	1611	4	FSM	ENSMUSG00000002396.9	ENSMUST00000002469.9	1611	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	9.2736184954957	169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGGCCTTGAACCGAGAT	NA	False	NA	NA	False	NA	NA	NA	71823982	71826333	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71824630_71825111_71825278_71825392_71825447_71825589
transcript_90576.nnic	chr8	-	1566	8	NNC	ENSMUSG00000034911.9	novel	2438	13	NA	NA	-943	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	3.14934395500694	16	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCCTTTGTCCCTGGCA	NA	False	NA	NA	False	NA	NA	NA	71843873	71838012	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_71838438_71838559_71838683_71838830_71838917_71839993_71840222_71841399_71841650_71842664_71842830_71843284_71843426_71843725
transcript_90587.known	chr8	+	1433	9	FSM	ENSMUSG00000031820.10	ENSMUST00000002473.10	1433	9	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_4	29.4573314303927	379	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTGTATGGCTTCAGGC	NA	False	NA	89	True	ACTAAA	-7	NA	71849504	71857263	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71849665_71850322_71850670_71851035_71851095_71852169_71852291_71852372_71852452_71854323_71854349_71855389_71855520_71855619_71855707_71856838
transcript_90593.known	chr8	+	2136	9	FSM	ENSMUSG00000046295.14	ENSMUST00000119976.8	2136	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	30.5366071298041	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTACTTTGTCTCCATGTC	NA	False	NA	18	True	NA	NA	NA	71858653	71862548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71858742_71858830_71858984_71859322_71859429_71859505_71859618_71859856_71860394_71860514_71860687_71861308_71861469_71861565_71861696_71861870
transcript_90596.known	chr8	+	1641	9	FSM	ENSMUSG00000046295.14	ENSMUST00000120725.2	1641	9	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	33.431833632034	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGACAGTGTGTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	71858667	71862127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71858742_71858830_71858984_71859322_71859429_71859505_71859618_71859916_71860394_71860514_71860687_71861308_71861469_71861565_71861696_71861870
transcript_906.known	chr1	+	454	4	FSM	ENSMUSG00000056763.17	ENSMUST00000190063.7	454	4	0	0	0	0	multi-exon	FALSE	canonical	2	91	junction_2	7.84573486395988	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAATTTATTCCTAAAAT	NA	False	NA	NA	False	NA	NA	NA	10110001	10129083	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_10110105_10115300_10115410_10117648_10117752_10128944
transcript_90601.nnic	chr8	+	1772	9	NNC	ENSMUSG00000046295.14	novel	2136	9	NA	NA	-42	0	at_least_one_novel_splicesite	TRUE	canonical	2	15	junction_4	30.2158898594763	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTACTTTGTCTCCATGTC	NA	False	NA	18	True	NA	NA	NA	71858611	71862548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_71858742_71858830_71858984_71859322_71859429_71859505_71859618_71860262_71860394_71860514_71860687_71861308_71861469_71861565_71861696_71861870
transcript_90603.nnic	chr8	+	1744	9	NNC	ENSMUSG00000046295.14	novel	2136	9	NA	NA	-42	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_4	32.4651255195479	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTACTTTGTCTCCATGTC	NA	False	NA	18	True	NA	NA	NA	71858611	71862548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_71858742_71858830_71858984_71859322_71859429_71859505_71859618_71860290_71860394_71860514_71860687_71861308_71861469_71861565_71861696_71861870
transcript_90610.nic	chr8	+	2293	8	ISM	ENSMUSG00000046295.14	ENSMUST00000120725.2	1641	9	-56	-421	-42	0	intron_retention	FALSE	canonical	2	5	junction_4	35.7228561145325	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTACTTTGTCTCCATGTC	NA	False	NA	18	True	NA	NA	NA	71858611	71862548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_71858742_71858830_71858984_71859322_71859429_71859505_71859618_71859916_71860394_71860514_71860687_71861308_71861469_71861565
transcript_90620.known	chr8	+	1935	8	FSM	ENSMUSG00000046295.14	ENSMUST00000124520.8	1935	8	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_7	7.9256751466744	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTCAGAGGACAGTGTGT	NA	False	NA	NA	False	NA	NA	NA	71858665	71862120	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71858742_71858830_71858984_71859322_71859429_71859505_71860394_71860514_71860687_71861308_71861469_71861565_71861696_71861870
transcript_90630.known	chr8	+	2410	7	FSM	ENSMUSG00000046295.14	ENSMUST00000125290.8	2410	7	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_6	8.31998931623246	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAACAACAACAAAGCCA	NA	False	NA	-18	True	NA	NA	NA	71858659	71862512	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71858742_71858830_71858984_71859322_71860394_71860514_71860687_71861308_71861469_71861565_71861696_71861870
transcript_90635.known	chr8	-	1978	5	FSM	ENSMUSG00000007950.10	ENSMUST00000008094.10	1978	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	6.41774882649672	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCCTCCAATTTGTGATT	NA	False	NA	-6	True	NA	NA	NA	71916299	71909348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_71910022_71910681_71910899_71911021_71911193_71913889_71914617_71916109
transcript_90636.nnic	chr8	-	1261	4	NIC	ENSMUSG00000007950.10	novel	1978	5	NA	NA	-10	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	26.7124606795322	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCCTCCAATTTGTGATT	NA	False	NA	-6	True	NA	NA	NA	71916309	71909348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_71910022_71910681_71910899_71911021_71911193_71916109
transcript_90637.known	chr8	+	607	2	FSM	ENSMUSG00000034880.8	ENSMUST00000048914.8	607	2	0	0	0	0	multi-exon	FALSE	canonical	3	904	junction_1	0	7992	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACTACGTATGTATTAACT	8920	False	NA	18	True	AATAAA	-18	NA	71917602	71918391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71917712_71917893
transcript_90647.known	chr8	+	1738	2	FSM	ENSMUSG00000074247.11	ENSMUST00000138892.2	1738	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCTGTGTATTTTTCTG	NA	False	NA	13	True	NA	NA	NA	71921842	71928742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71921970_71927131
transcript_90649.known	chr8	+	1929	5	FSM	ENSMUSG00000074247.11	ENSMUST00000135052.8	1929	5	0	0	0	0	multi-exon	FALSE	canonical	2	81	junction_1	303.826739277503	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCTGTGTATTTTTCTG	NA	False	NA	13	True	NA	NA	NA	71921842	71928742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71921970_71924684_71924762_71924838_71924891_71926418_71926481_71927131
transcript_9065.known	chr10	-	861	4	FSM	ENSMUSG00000020018.7	ENSMUST00000020203.7	861	4	0	0	0	0	multi-exon	FALSE	canonical	3	2132	junction_3	195.841772867792	10774	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTTGTTCACTTGAAAG	NA	False	NA	NA	False	GATAAA	-36	NA	93425568	93418890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_93419393_93419891_93419957_93423859_93423986_93425400
transcript_90650.known	chr8	+	1881	4	FSM	ENSMUSG00000074247.11	ENSMUST00000130098.8	1881	4	0	0	0	0	multi-exon	FALSE	canonical	2	31	junction_2	319.275568888208	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCTGTGTATTTTTCTG	NA	False	NA	13	True	NA	NA	NA	71921842	71928742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71921970_71924680_71924762_71926418_71926481_71927131
transcript_90651.known	chr8	+	1865	4	FSM	ENSMUSG00000074247.11	ENSMUST00000147642.2	1865	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	377.602966090045	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCTGTGTATTTTTCTG	NA	False	NA	13	True	NA	NA	NA	71921848	71928742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71921970_71924680_71924762_71924838_71924891_71927131
transcript_90654.known	chr8	+	2392	9	FSM	ENSMUSG00000007610.16	ENSMUST00000127741.2	2392	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	23.9892554073694	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCCTTTCCCTCGAACT	NA	False	NA	139	True	NA	NA	NA	71941394	71946044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71941485_71941714_71941963_71942071_71942159_71942978_71943182_71943298_71943612_71943709_71943854_71944068_71944235_71944720_71945000_71945182
transcript_90656.known	chr8	+	2800	9	FSM	ENSMUSG00000007610.16	ENSMUST00000007754.13	2800	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	23.9892554073694	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCCTTTCCCTCGAACT	NA	False	NA	139	True	NA	NA	NA	71940746	71946044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71941485_71941714_71941963_71942071_71942159_71942978_71943182_71943538_71943612_71943709_71943854_71944068_71944235_71944720_71945000_71945182
transcript_90659.nic	chr8	+	1421	8	ISM	ENSMUSG00000007610.16	ENSMUST00000007754.13	2800	9	597	965	-21	-965	5prime_fragment	FALSE	canonical	0	0	junction_4	25.2303671905787	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTCAGCCTCAGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	71941343	71945079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_71941485_71941714_71941963_71942071_71942159_71942978_71943182_71943538_71943612_71943709_71943854_71944068_71944235_71944720
transcript_90662.known	chr8	+	2109	8	FSM	ENSMUSG00000007610.16	ENSMUST00000095259.10	2109	8	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	25.5774135055258	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCCTTTCCCTCGAACT	NA	False	NA	139	True	NA	NA	NA	71941364	71946044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71941485_71941714_71941963_71942071_71942159_71942978_71943182_71943709_71943854_71944068_71944235_71944720_71945000_71945182
transcript_90665.nnic	chr8	+	1862	7	NIC	ENSMUSG00000007610.16	novel	2109	8	NA	NA	-21	-124	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	27.6083723211315	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGTGTAGTAGCATGTG	NA	False	NA	15	True	ATTAAA	-17	NA	71941343	71945920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_71941485_71941714_71941963_71942071_71942159_71942978_71943182_71944068_71944235_71944720_71945000_71945182
transcript_90668.nnic	chr8	-	1003	4	NNC	ENSMUSG00000034845.7	novel	1987	6	NA	NA	4001	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	7.07106781186548	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGGTTTGTATTTGTTTG	NA	False	NA	NA	False	AATAAA	-18	NA	71960395	71950408	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_71951050_71959480_71959563_71959663_71959722_71960173
transcript_90669.known	chr8	-	1987	6	FSM	ENSMUSG00000034845.7	ENSMUST00000048452.6	1987	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	7.60526133673262	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGGTTTGTATTTGTTTG	NA	False	NA	NA	False	AATAAA	-18	NA	71964396	71950408	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_71951050_71959480_71959563_71959663_71959722_71960244_71960952_71961107_71961205_71963994
transcript_90677.known	chr8	-	792	5	FSM	ENSMUSG00000046718.9	ENSMUST00000051672.9	792	5	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_3	21.2176223927187	3348	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTTGCTTCTAAGTTGCT	NA	False	NA	NA	False	AATAAA	-17	NA	71990100	71986898	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_71987125_71987315_71987437_71988429_71988470_71989002_71989079_71989771
transcript_90679.known	chr8	+	1062	9	FSM	ENSMUSG00000031813.9	ENSMUST00000034272.9	1062	9	0	0	0	0	multi-exon	FALSE	canonical	3	346	junction_1	32.3177582762171	3108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGAGTGTATTGTTTT	NA	False	NA	11	True	AGTAAA	-18	NA	71995573	72000670	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71995702_71995776_71995876_71996030_71996128_71997867_71997995_71998190_71998311_71998393_71998501_71999616_71999679_72000221_72000279_72000405
transcript_9068.known	chr10	+	1060	1	FSM	ENSMUSG00000090610.4	ENSMUST00000170703.4	1060	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	978	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCGGAATTGGAGAGGCTG	NA	False	NA	NA	False	NA	NA	NA	93614521	93615581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_93614500_93615600
transcript_90680.known	chr8	+	1519	2	FSM	ENSMUSG00000031813.9	ENSMUST00000212341.2	1519	2	0	0	0	0	multi-exon	FALSE	canonical	3	346	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGGGCTGGAGCATTAGC	NA	False	NA	NA	False	NA	NA	NA	71995571	71997165	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_71995702_71995776
transcript_90689.known	chr8	+	1062	5	FSM	ENSMUSG00000031807.11	ENSMUST00000143441.2	1062	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	254.639941878724	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTGTTTCTGTGGTTCTT	NA	False	NA	15	True	ATTAAA	-15	NA	72044934	72048913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_72045433_72046727_72046836_72047312_72047415_72047704_72047846_72048700
transcript_90690.known	chr8	+	893	5	FSM	ENSMUSG00000031807.11	ENSMUST00000034264.11	893	5	0	0	0	0	multi-exon	FALSE	canonical	3	546	junction_2	58.7132864009502	1665	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTGTTTCTGTGGTTCTT	NA	False	NA	15	True	ATTAAA	-15	NA	72044819	72048913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_72045149_72046727_72046836_72047312_72047415_72047704_72047846_72048700
transcript_90691.known	chr8	+	1561	10	FSM	ENSMUSG00000043243.16	ENSMUST00000127285.2	1561	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	4.60541817245838	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTTTTAAATATGTTTA	NA	False	NA	-7	True	CATAAA	-11	NA	72054994	72060568	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_72055133_72055204_72055310_72055407_72055571_72056280_72056472_72056564_72056724_72057381_72057499_72057571_72057680_72058250_72058363_72059304_72059389_72060184
transcript_90692.known	chr8	+	3207	12	FSM	ENSMUSG00000034807.10	ENSMUST00000047903.10	3207	12	0	0	0	0	multi-exon	FALSE	canonical	3	748	junction_9	75.1827525499814	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTTGGGTTTGGTGCCCC	NA	False	NA	30	True	ATTAAA	-22	NA	72063641	72077555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_72064089_72064727_72064839_72065553_72065672_72070193_72070329_72070718_72070924_72072295_72072416_72073244_72073322_72073391_72073499_72074407_72074541_72075346_72075475_72075733_72075941_72076136
transcript_90694.nnic	chr8	-	1049	9	NNC	ENSMUSG00000034799.17	novel	10255	44	NA	NA	-31	-1	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	18.6677362044786	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACGTGTGTTATATATAAC	NA	False	NA	-3	True	NA	NA	NA	72124432	72112990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_72113294_72113397_72113477_72114462_72114496_72115124_72115180_72115498_72115573_72115806_72115931_72116802_72116921_72118622_72118723_72124269
transcript_90695.known	chr8	-	944	8	FSM	ENSMUSG00000034799.17	ENSMUST00000176777.8	944	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	16.3682120998886	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTTATATATAACAAGTTG	NA	False	NA	3	True	NA	NA	NA	72124385	72112984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_72113294_72114462_72114496_72115124_72115180_72115483_72115573_72115806_72115931_72116802_72116921_72118622_72118723_72124269
transcript_90698.nnic	chr8	-	916	7	NIC	ENSMUSG00000034799.17	novel	10255	44	NA	NA	-31	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	18.8922382651359	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACGTGTGTTATATATAACA	NA	False	NA	-2	True	NA	NA	NA	72124432	72112989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_72113294_72114462_72114496_72115498_72115573_72115806_72115931_72116802_72116921_72118622_72118723_72124269
transcript_907.known	chr1	+	487	4	FSM	ENSMUSG00000056763.17	ENSMUST00000191521.7	487	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	49.2702299117383	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATTTACTTTTGAGAAG	NA	False	NA	NA	False	TTTAAA	-9	NA	10109991	10129097	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_10110105_10115300_10115419_10117648_10117752_10128944
transcript_90704.known	chr8	-	10255	44	FSM	ENSMUSG00000034799.17	ENSMUST00000030170.15	10255	44	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_8	15.3940841186415	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTAGACTCTGTCATTGT	NA	False	NA	NA	False	AATAAA	-15	NA	72124401	72077060	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_72082368_72083159_72083320_72083597_72083691_72087160_72087309_72087532_72087614_72087813_72087871_72089181_72089212_72090415_72090455_72091860_72091867_72092343_72092468_72093999_72094153_72094496_72094586_72094772_72094851_72095735_72095820_72097196_72097341_72097516_72097614_72098328_72098456_72098541_72098628_72100544_72100679_72101541_72101677_72102191_72102282_72102497_72102567_72103170_72103322_72103767_72103932_72104596_72104713_72104877_72105048_72105161_72105304_72106031_72106260_72107447_72107668_72107776_72107849_72108146_72108153_72108306_72108386_72108898_72108946_72110646_72110756_72110899_72111446_72113085_72113294_72114462_72114496_72115124_72115180_72115498_72115573_72115806_72115931_72116802_72116921_72118622_72118723_72119284_72119315_72124269
transcript_90705.known	chr8	+	4019	25	FSM	ENSMUSG00000031805.18	ENSMUST00000051995.14	4019	25	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_24	33.9656689418399	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTTTTTTCCCCCCTGGG	NA	False	NA	10	True	AATAAA	-13	NA	72128939	72143219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_72129228_72130972_72131166_72131320_72131445_72131621_72131734_72131845_72131992_72132202_72132489_72133078_72133202_72133283_72133442_72133526_72133639_72134144_72134332_72134706_72134832_72134925_72135058_72135543_72135629_72135975_72136104_72136596_72136730_72136860_72137013_72137127_72137279_72137809_72137950_72138028_72138219_72138392_72138518_72138596_72138770_72139498_72139617_72139882_72139994_72140683_72140807_72142815
transcript_90706.known	chr8	+	4009	24	FSM	ENSMUSG00000031805.18	ENSMUST00000110013.10	4009	24	0	0	0	0	multi-exon	TRUE	canonical	3	153	junction_6	28.4113052926296	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAGAAAAGATGGTTTGTG	NA	False	NA	-4	True	AATGAA	-4	NA	72128939	72141200	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_72129228_72130972_72131166_72131320_72131445_72131621_72131734_72131845_72131992_72132202_72132489_72133078_72133202_72133283_72133442_72133526_72133639_72134144_72134332_72134706_72134832_72134925_72135058_72135543_72135629_72135975_72136104_72136596_72136730_72136860_72137013_72137127_72137279_72137809_72137950_72138028_72138219_72138392_72138518_72138596_72138770_72139498_72139617_72139882_72139994_72140683
transcript_90712.nic	chr8	+	816	5	ISM	ENSMUSG00000031805.18	ENSMUST00000110012.2	3774	24	8176	252	7392	-250	3prime_fragment	FALSE	canonical	3	198	junction_3	31.2209865314983	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTCTGCGCGGTTGTCAGC	2516	False	NA	21	True	ATTAAA	-13	NA	72138370	72140950	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_72138518_72138596_72138770_72139498_72139617_72139882_72139994_72140683
transcript_90714.nic	chr8	+	1045	4	ISM	ENSMUSG00000031805.18	ENSMUST00000130624.2	4049	22	8231	-351	8231	0	3prime_fragment	FALSE	canonical	3	125	junction_3	65.8229949688304	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTTTTTTCCCCCCTGGG	562	False	NA	10	True	AATAAA	-13	NA	72139209	72143219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_72139617_72139882_72139994_72140683_72140807_72142815
transcript_90715.nnic	chr8	+	759	4	Fusion	ENSMUSG00000031805.18_ENSMUSG00000079019.3	novel	623	2	NA	NA	-2480	0	multi-exon	FALSE	canonical	1	2	junction_1	116.287956766335	27	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTTTTTTCCCCCCTGGG	730	False	NA	10	True	AATAAA	-13	NA	72139377	72143219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr8_+_72139499_72139882_72139994_72140683_72140807_72142815
transcript_90720.nnic	chr8	+	633	3	Fusion	ENSMUSG00000031805.18_ENSMUSG00000079019.3	novel	623	2	NA	NA	-2480	-3	multi-exon	FALSE	canonical	1	2	junction_1	0.5	19	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATACTTTTTTTCCCCCCT	730	False	NA	7	True	AATAAA	-10	NA	72139377	72143216	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr8_+_72139499_72139882_72139994_72142815
transcript_90722.known	chr8	-	3055	3	FSM	ENSMUSG00000031803.9	ENSMUST00000034260.9	3055	3	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_2	27	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTACTGTCTATTGTGCAC	8521	False	NA	NA	False	NA	NA	NA	72154433	72143399	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_72145800_72145960_72146544_72154361
transcript_90728.known	chr8	-	3188	28	FSM	ENSMUSG00000070000.14	ENSMUST00000146100.8	3188	28	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_17	36.1995308763152	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCATAGCTGTGATTTTT	NA	False	NA	-6	True	NA	NA	NA	72178360	72161037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_72161476_72161569_72161735_72161973_72162030_72162218_72162419_72162637_72162771_72162982_72163139_72163641_72163751_72163848_72163937_72164036_72164144_72164694_72164938_72165113_72165209_72165543_72165596_72165944_72165970_72166058_72166236_72166618_72166679_72166915_72166941_72167343_72167417_72167526_72167572_72168120_72168218_72168328_72168428_72169200_72169306_72169415_72169569_72169785_72169928_72170079_72170155_72170930_72171023_72173895_72173949_72174462_72174504_72178276
transcript_9073.known	chr10	-	4424	11	FSM	ENSMUSG00000036112.16	ENSMUST00000047910.15	4424	11	0	0	0	0	multi-exon	FALSE	canonical	3	2022	junction_3	150.158882521148	3174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGGAGTGAAAGACCAGT	NA	False	NA	-14	True	AATAAA	-23	NA	93725676	93694350	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715505_93715934_93716001_93722855_93722964_93725399
transcript_90730.known	chr8	+	7186	4	FSM	ENSMUSG00000056019.13	ENSMUST00000188685.7	7186	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	3.85861230093008	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCGCATGTTGGTCTGTC	NA	False	NA	NA	False	NA	NA	NA	72635862	72649571	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_72636053_72641107_72641235_72641444_72641506_72642763
transcript_90731.known	chr8	+	717	3	FSM	ENSMUSG00000056019.13	ENSMUST00000188374.7	717	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	1	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGTTGCTGGGATTTG	NA	False	NA	NA	False	NA	NA	NA	72635924	72641906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_72636053_72641107_72641235_72641444
transcript_90735.known	chr8	+	2920	4	FSM	ENSMUSG00000066880.16	ENSMUST00000119003.2	2920	4	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	7.78888096369861	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTAGTGTTCTATTGCTGT	NA	False	NA	29	True	AATAAA	-17	NA	72676695	72688473	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_72676817_72682045_72682173_72682981_72683043_72685862
transcript_90739.known	chr8	+	3152	3	FSM	ENSMUSG00000089857.10	ENSMUST00000110002.8	3152	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	2.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTCTAGTGAAATTATTTA	NA	False	NA	NA	False	AATAAA	-1	NA	72662451	72670198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_72662583_72666965_72667093_72667304
transcript_9074.known	chr10	-	1876	11	FSM	ENSMUSG00000036112.16	ENSMUST00000181091.8	1876	11	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_8	660.841047453924	1870	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAGATACATTTTAATGT	NA	False	NA	-17	True	AATAAA	-15	NA	93725637	93696790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715436_93715934_93716001_93722855_93722964_93725399
transcript_90743.known	chr8	+	781	5	FSM	ENSMUSG00000052446.18	ENSMUST00000132848.2	781	5	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_4	171.238868251341	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACGCAGCATATTTTTGAAC	NA	False	NA	NA	False	AATAAA	-26	NA	72704934	72725560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_72705005_72719637_72719765_72719943_72720005_72721742_72722009_72725303
transcript_90745.known	chr8	+	2713	4	FSM	ENSMUSG00000052446.18	ENSMUST00000109997.10	2713	4	0	0	0	0	multi-exon	FALSE	canonical	3	347	junction_3	51.1468474101777	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTGTAGAGACTCTT	NA	False	NA	16	True	AATAAA	-18	NA	72704914	72724177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_72705005_72719637_72719765_72719943_72720005_72721742
transcript_90747.known	chr8	+	504	4	FSM	ENSMUSG00000052446.18	ENSMUST00000145256.8	504	4	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	168.256418071413	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAATATGTAAAGAAATAC	NA	False	NA	NA	False	AATACA	-16	NA	72704913	72721897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_72705005_72719637_72719835_72719943_72720005_72721742
transcript_90749.known	chr8	+	698	4	FSM	ENSMUSG00000052446.18	ENSMUST00000151168.2	698	4	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	148.102066907327	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGCCTTCAGTTACCGG	NA	False	NA	NA	False	NA	NA	NA	72707290	72722020	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_72707523_72719637_72719765_72719943_72720005_72721742
transcript_9075.known	chr10	-	1984	11	FSM	ENSMUSG00000036112.16	ENSMUST00000181217.8	1984	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_8	666.978530389097	1913	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAGATACATTTTAATGT	NA	False	NA	-17	True	AATAAA	-15	NA	93725646	93696790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715535_93715934_93716001_93722855_93722964_93725399
transcript_90750.nic	chr8	+	394	3	ISM	ENSMUSG00000052446.18	ENSMUST00000109997.10	2713	4	-31	4088	2	1	5prime_fragment	FALSE	canonical	3	359	junction_2	51	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTGTTTGTTTGTTTT	NA	False	NA	NA	False	ATTAAA	-19	NA	72704883	72720089	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_72705005_72719637_72719765_72719943
transcript_90751.known	chr8	+	601	3	FSM	ENSMUSG00000052446.18	ENSMUST00000136516.9	601	3	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_2	182.5	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCCCTTAGGGAACATAAA	NA	False	NA	NA	False	NA	NA	NA	72704910	72722122	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_72705005_72719637_72719765_72721742
transcript_90752.known	chr8	+	422	3	FSM	ENSMUSG00000052446.18	ENSMUST00000147033.2	422	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	200	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTTTTGTTTGTTTGTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	72704924	72720088	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_72705005_72719637_72719835_72719943
transcript_90753.known	chr8	+	416	3	FSM	ENSMUSG00000052446.18	ENSMUST00000139781.8	416	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	148.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTGAGAAAGCCTTCAG	NA	False	NA	NA	False	NA	NA	NA	72704920	72722013	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_72705005_72719943_72720005_72721742
transcript_90759.known	chr8	+	701	2	FSM	ENSMUSG00000052446.18	ENSMUST00000144807.2	701	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATTCCAGCCATGTTCAA	NA	False	NA	NA	False	NA	NA	NA	72704923	72722362	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_72705005_72721742
transcript_9076.known	chr10	-	11138	12	FSM	ENSMUSG00000036099.17	ENSMUST00000119818.8	11138	12	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_7	12.5467719993354	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTGTGTGTGTCCCTTTT	3395	False	NA	NA	False	AATAAA	-18	NA	93871679	93797383	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_93806567_93809696_93809905_93810306_93810408_93816175_93816370_93820023_93820356_93826001_93826150_93829378_93829529_93832699_93832976_93836212_93836386_93839854_93839945_93842821_93842957_93871531
transcript_90762.known	chr8	+	2044	8	FSM	ENSMUSG00000031799.11	ENSMUST00000238492.2	2044	8	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_1	228.433708510092	1079	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTGGATTTATTCTTT	NA	False	NA	NA	False	AATAAA	-16	NA	72889651	72906984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_72889765_72892431_72892566_72897293_72897412_72898521_72898593_72900295_72900372_72900900_72900964_72901041_72901112_72905585
transcript_90766.nnic	chr8	-	487	3	Antisense	novelGene_ENSMUSG00000031799.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_2	5	34	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCTTGGCTTCATCCT	NA	False	NA	NA	False	NA	NA	NA	72889673	72872238	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr8_-_72872370_72872694_72872839_72889461
transcript_90768.known	chr8	+	2158	8	FSM	ENSMUSG00000031799.11	ENSMUST00000003575.11	2158	8	0	0	0	0	multi-exon	FALSE	canonical	3	688	junction_1	35.3714978074559	1435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGATTTATTCTTTTA	NA	False	NA	NA	False	AATAAA	-18	NA	72889072	72906986	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_72889298_72892431_72892566_72897293_72897412_72898521_72898593_72900295_72900372_72900900_72900964_72901041_72901112_72905585
transcript_9077.known	chr10	-	4479	12	FSM	ENSMUSG00000036099.17	ENSMUST00000047711.13	4479	12	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_7	11.4039285676849	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAAGAAAAAAGAAAGA	3464	False	NA	NA	False	NA	NA	NA	93871610	93803961	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_93806567_93809696_93809905_93810306_93810408_93816175_93816370_93820023_93820356_93826001_93826150_93829378_93829517_93832699_93832976_93836212_93836386_93839854_93839945_93842821_93842957_93871531
transcript_90771.known	chr8	+	1824	6	FSM	ENSMUSG00000062007.14	ENSMUST00000072097.14	1824	6	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	2.28035085019828	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTTTGCATCATTTGCG	NA	False	NA	NA	False	NA	NA	NA	72943481	72955371	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_72943532_72947282_72947430_72950639_72950730_72951582_72951749_72952211_72952332_72954120
transcript_90776.nnic	chr8	-	539	4	NNC	ENSMUSG00000074240.6	novel	585	5	NA	NA	5332	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6.37704215656966	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGGATCTCTGCCTTTTGC	NA	False	NA	NA	False	AATAAA	-18	NA	72961331	72958178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_72958275_72959406_72959603_72960970_72961119_72961232
transcript_90778.nic	chr8	-	669	3	ISM	ENSMUSG00000074240.6	ENSMUST00000098630.5	585	5	5316	-43	5316	0	3prime_fragment	FALSE	canonical	3	13	junction_2	0.5	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGGATCTCTGCCTTTTGC	NA	False	NA	NA	False	AATAAA	-18	NA	72961347	72958178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_72958275_72959406_72959603_72960970
transcript_90782.known	chr8	+	3387	3	FSM	ENSMUSG00000003039.10	ENSMUST00000212117.2	3387	3	0	0	0	0	multi-exon	FALSE	canonical	3	920	junction_2	33.5	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAACTTTGTGCGTGAAAC	NA	False	NA	18	True	AATATA	-14	NA	72973607	72977274	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_72973705_72973784_72975826_72976025
transcript_90787.known	chr8	+	2084	12	FSM	ENSMUSG00000003033.16	ENSMUST00000003117.15	2084	12	0	0	0	0	multi-exon	FALSE	canonical	3	513	junction_9	40.3802177244139	697	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGTCTTCTCTCTGTGT	NA	False	NA	19	True	ATTAAA	-20	NA	72993861	73011229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_72994088_73000482_73000640_73002956_73003025_73003592_73003724_73004524_73004673_73005586_73005714_73006678_73006822_73007052_73007125_73007318_73007478_73009540_73009667_73009950_73010027_73010578
transcript_90801.known	chr8	-	1151	1	FSM	ENSMUSG00000070713.6	ENSMUST00000075602.8	1151	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2955	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAATAAAAAAAAT	NA	False	NA	NA	False	AATAAA	-22	NA	73059104	73057953	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_73058000_73059100
transcript_90809.nnic	chr8	+	846	2	NIC	ENSMUSG00000055148.8	novel	1847	3	NA	NA	-121	-305	combination_of_known_splicesites	FALSE	canonical	3	215	junction_1	0	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGGTAGTGGTGTGGCTG	NA	False	NA	34	True	ATTAAA	-21	NA	73072755	73075195	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_73072994_73074587
transcript_90810.known	chr8	+	1847	3	FSM	ENSMUSG00000055148.8	ENSMUST00000067912.8	1847	3	0	0	0	0	multi-exon	FALSE	canonical	3	2955	junction_2	16	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCTTGGGGTTTAGCCAA	NA	False	NA	21	True	ATTAAA	-16	NA	73072876	73075500	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_73072994_73073269_73074087_73074587
transcript_90812.known	chr8	-	3129	24	FSM	ENSMUSG00000006276.11	ENSMUST00000163643.3	3129	24	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_2	82.9540606689901	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACATGAGACTATCTTCT	NA	False	NA	NA	False	TATAAA	-39	NA	73175304	73094842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_73095369_73099809_73100016_73112156_73112290_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
transcript_90818.nic	chr8	-	2845	22	NIC	ENSMUSG00000006276.11	novel	2686	22	NA	NA	-57	0	combination_of_known_junctions	FALSE	canonical	3	75	junction_1	69.7814859566126	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAACATGAGACTATCTT	NA	False	NA	NA	False	TATAAA	-37	NA	73175361	73094844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_73095369_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
transcript_9082.known	chr10	-	1790	1	FSM	ENSMUSG00000110869.2	ENSMUST00000214203.2	1790	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAAAGCAAAAAAAAAAAA	3411	False	NA	NA	False	NA	NA	NA	93871663	93869873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_93869900_93871700
transcript_90821.known	chr8	-	3376	16	FSM	ENSMUSG00000006276.11	ENSMUST00000212590.2	3376	16	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_2	26.4222128772995	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTCTTTGTTCAGTGTTCC	NA	False	NA	NA	False	AATAAA	-13	NA	73175299	73131261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
transcript_90822.nic	chr8	-	1425	13	ISM	ENSMUSG00000006276.11	ENSMUST00000212590.2	3376	16	-62	3914	-57	-3914	5prime_fragment	FALSE	canonical	3	315	junction_4	27.2798002192098	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGATGTGTTTTTGTTTC	NA	False	NA	NA	False	AATATA	-17	NA	73175361	73135175	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
transcript_90823.nic	chr8	-	930	9	ISM	ENSMUSG00000006276.11	ENSMUST00000212590.2	3376	16	-62	9379	-57	-9379	5prime_fragment	FALSE	canonical	3	316	junction_1	27.8702350187436	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTAAAACCTTACTAG	NA	False	NA	NA	False	AATAAA	-19	NA	73175361	73140640	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
transcript_90826.known	chr8	-	2620	22	FSM	ENSMUSG00000006276.11	ENSMUST00000212950.2	2620	22	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	58.0603720511769	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTCTATCTAGTAGCCTC	NA	False	NA	NA	False	NA	NA	NA	73175282	73111911	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_73112290_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
transcript_90827.known	chr8	-	2686	22	FSM	ENSMUSG00000006276.11	ENSMUST00000212121.2	2686	22	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_6	89.8414577371977	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAACATGAGACTATCTT	NA	False	NA	NA	False	TATAAA	-37	NA	73175295	73094844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_73095369_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132927_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
transcript_90829.known	chr8	-	1769	9	FSM	ENSMUSG00000019732.15	ENSMUST00000019876.12	1769	9	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	4.64858849544676	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAAAATATTTTGTTT	9998	False	NA	NA	False	AATAAA	-15	NA	73197714	73178019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_73178600_73179610_73179704_73181005_73181138_73181913_73182010_73185216_73185406_73188633_73188729_73192275_73192480_73197238_73197341_73197436
transcript_9083.known	chr10	+	3732	14	FSM	ENSMUSG00000005897.15	ENSMUST00000105290.9	3732	14	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	6	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATTTCTGTATCCTGTC	NA	False	NA	NA	False	ATTAAA	-15	NA	93983884	94033073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_93983965_93992768_93992842_93998111_93998307_93999590_93999670_94001279_94001460_94003271_94003420_94003499_94003591_94006910_94007096_94007839_94008000_94017355_94017478_94024010_94024151_94026480_94026619_94028696_94028803_94031038
transcript_90834.known	chr8	-	3646	18	FSM	ENSMUSG00000052488.8	ENSMUST00000212991.2	3646	18	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_13	64.9317448394025	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAAGACACTTGATTTTT	NA	False	NA	-2	True	AATAAA	-31	NA	73229070	73214473	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_73215200_73215279_73215466_73215592_73215688_73215823_73215947_73216020_73216165_73216247_73216335_73216644_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222331_73223707_73223860_73223933_73224072_73224714_73224900_73228455_73228630_73228901
transcript_90835.known	chr8	-	3713	18	FSM	ENSMUSG00000052488.8	ENSMUST00000079510.6	3713	18	0	0	0	0	multi-exon	TRUE	canonical	3	101	junction_13	118.126552277382	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATTTCCTCTAGCTGT	NA	False	NA	-12	True	AATAAA	-10	NA	73228963	73214332	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_73215200_73215279_73215466_73215592_73215688_73215823_73215947_73216020_73216165_73216247_73216335_73216644_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222364_73223707_73223860_73223933_73224072_73224714_73224900_73228455_73228630_73228901
transcript_90839.known	chr8	+	2887	8	FSM	ENSMUSG00000052794.14	ENSMUST00000064853.13	2887	8	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	11.7334338276463	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTCAGGAGTCAGAAAATC	NA	False	NA	NA	False	ATTAAA	-15	NA	73197723	73214845	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_73197834_73198593_73199315_73203293_73203586_73205202_73205277_73208957_73209412_73211816_73211913_73212446_73212614_73213872
transcript_90840.known	chr8	-	912	2	FSM	ENSMUSG00000052488.8	ENSMUST00000212586.2	912	2	0	0	0	0	multi-exon	FALSE	canonical	3	629	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	73229005	73227821	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_73228630_73228901
transcript_90841.known	chr8	-	2997	3	FSM	ENSMUSG00000045248.7	ENSMUST00000058534.7	2997	3	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_2	2.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCAGTTTTGGAATCATT	3617	False	NA	-5	True	AATAAA	-15	NA	73302114	73248404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_73250951_73251366_73251442_73301738
transcript_90842.known	chr8	+	2994	2	FSM	ENSMUSG00000097000.3	ENSMUST00000181452.2	2994	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTCTTTAAAAATTATCA	NA	False	NA	NA	False	AATAAA	-14	NA	73246777	73259343	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_73246895_73256466
transcript_90843.known	chr8	-	2892	5	FSM	ENSMUSG00000044600.15	ENSMUST00000167290.8	2892	5	0	0	0	0	multi-exon	FALSE	canonical	3	388	junction_4	37.7582772382427	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTCTATCTACTCCTAT	NA	False	NA	1	True	AATAAA	-27	NA	73324932	73319031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_73321653_73322699_73322791_73323809_73323863_73324717_73324760_73324847
transcript_90844.known	chr8	-	642	4	FSM	ENSMUSG00000044600.15	ENSMUST00000058733.9	642	4	0	0	0	0	multi-exon	FALSE	canonical	3	464	junction_1	11.0855260988773	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGGGTGTCTTTGTCTGT	NA	False	NA	-6	True	NA	NA	NA	73324893	73321330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_73321653_73322699_73322791_73323809_73323863_73324717
transcript_90845.known	chr8	+	2124	6	FSM	ENSMUSG00000031791.9	ENSMUST00000034244.9	2124	6	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_3	8.51821577561874	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCTTTTTCTTTATTCA	NA	False	NA	NA	False	AATAAA	-18	NA	73325916	73341126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_73326072_73333406_73333564_73333803_73333989_73335028_73335117_73338543_73338662_73339705
transcript_90849.known	chr8	+	820	5	FSM	ENSMUSG00000031791.9	ENSMUST00000211914.2	820	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	20.2484567313166	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCCGCCCTGCTCTCTAC	NA	False	NA	NA	False	AAGAAA	-40	NA	73325934	73340025	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_73326072_73333406_73333564_73335028_73335117_73338543_73338662_73339705
transcript_90854.known	chr8	+	1024	7	FSM	ENSMUSG00000031622.17	ENSMUST00000109950.5	1024	7	0	0	0	0	multi-exon	FALSE	canonical	3	644	junction_5	27.2197844713485	4368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTAGTTATGTGCAGCAGT	NA	False	NA	24	True	AATAAA	-21	NA	73449912	73466534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_73450037_73450671_73450779_73452164_73452319_73457708_73457907_73459972_73460117_73465996_73466117_73466357
transcript_90855.known	chr8	+	1257	6	FSM	ENSMUSG00000031622.17	ENSMUST00000212095.2	1257	6	0	0	0	0	multi-exon	FALSE	canonical	3	644	junction_5	28.5587114555261	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTAGTTATGTGCAGC	NA	False	NA	21	True	AATAAA	-18	NA	73449917	73466531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_73450037_73450671_73450779_73452164_73452319_73457708_73457907_73459972_73460117_73465996
transcript_90856.known	chr8	+	4115	19	FSM	ENSMUSG00000031622.17	ENSMUST00000004494.16	4115	19	0	0	0	0	multi-exon	TRUE	canonical	3	31	junction_6	282.896831519815	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTCAGGGTCCTTCGTC	NA	False	NA	26	True	ATTAAA	-17	NA	73449915	73484829	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_73450037_73450671_73450779_73452164_73452319_73457708_73457907_73459972_73460117_73465996_73466117_73468101_73468192_73468437_73468557_73471085_73471294_73471521_73471639_73473037_73473277_73474312_73474497_73476346_73476897_73477063_73477234_73479794_73479969_73480172_73480266_73483100_73483196_73483475_73483681_73483802
transcript_90866.known	chr8	+	2267	15	FSM	ENSMUSG00000042870.16	ENSMUST00000165630.3	2267	15	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_1	29.4884965464743	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGCTCTGGCGGAAGCAA	NA	False	NA	12	True	AATAAA	-25	NA	75760332	75796749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_75760456_75774620_75774706_75776817_75776897_75778135_75778286_75778550_75778686_75778777_75778925_75781204_75781322_75783782_75783917_75785068_75785103_75785440_75785535_75787060_75787182_75791021_75791098_75794149_75794210_75795723_75795764_75795877
transcript_90874.nic	chr8	+	2113	13	NIC	ENSMUSG00000042870.16	novel	2267	15	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	88.9817006780358	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGCTCTGGCGGAAGCAA	NA	False	NA	12	True	AATAAA	-25	NA	75760322	75796749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_75760456_75778135_75778286_75778550_75778686_75778777_75778925_75781204_75781322_75783782_75783917_75785068_75785103_75785440_75785535_75787060_75787182_75791021_75791098_75794149_75794210_75795723_75795764_75795877
transcript_90875.known	chr8	+	3989	12	FSM	ENSMUSG00000034518.15	ENSMUST00000145919.2	3989	12	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	21.8858798209528	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGTCTTAGCTGTCTTT	NA	False	NA	32	True	ATTAAA	-23	NA	75720306	75758606	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_75720378_75725462_75725567_75726187_75726337_75726440_75726520_75726626_75726742_75727277_75728213_75746871_75746954_75748430_75748496_75749826_75749933_75750625_75750796_75756115_75756239_75756616
transcript_90881.known	chr8	+	2656	7	FSM	ENSMUSG00000034518.15	ENSMUST00000109940.2	2656	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	40.0489284084689	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTACAGTTGTATAAAGAAA	NA	False	NA	-33	True	AATAAA	-25	NA	75742849	75758541	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_75743035_75746871_75746954_75748430_75748496_75749826_75749933_75750625_75750796_75756115_75756239_75756616
transcript_90884.nic	chr8	+	1289	6	ISM	ENSMUSG00000034518.15	ENSMUST00000145919.2	3989	12	-50	30608	-50	62	5prime_fragment	FALSE	canonical	3	57	junction_2	17.0926884953772	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAAGGACAAAGACAGAC	NA	False	NA	NA	False	NA	NA	NA	75720256	75727998	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_75720378_75725462_75725567_75726187_75726337_75726440_75726520_75726626_75726742_75727277
transcript_90886.known	chr8	+	4191	11	FSM	ENSMUSG00000034518.15	ENSMUST00000041759.14	4191	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	33.0128762757806	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATAGTCCAGTCTTAGCT	NA	False	NA	26	True	ATTAAA	-17	NA	75719983	75758600	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_75720378_75725462_75725567_75726187_75726337_75726440_75726520_75727277_75728213_75746871_75746954_75748430_75748496_75749826_75749933_75750625_75750796_75756115_75756239_75756616
transcript_90889.known	chr8	+	512	4	FSM	ENSMUSG00000034518.15	ENSMUST00000211863.2	512	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	32.7244387100664	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCAATGCCCACAAATCCA	NA	False	NA	NA	False	NA	NA	NA	75720322	75727506	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_75720378_75726187_75726337_75726440_75726520_75727277
transcript_90890.nic	chr8	+	1269	3	ISM	ENSMUSG00000042870.16	ENSMUST00000212299.2	469	5	-113	1059	-87	-873	5prime_fragment	FALSE	canonical	3	248	junction_1	43	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAACAGTAGCAAAATTACAG	NA	False	NA	NA	False	NA	NA	NA	75760245	75777791	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_75760456_75774620_75774706_75776817
transcript_90891.nnic	chr8	+	1607	5	NNC	ENSMUSG00000005413.9	novel	1569	5	NA	NA	119	0	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_1	92.3102784092866	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGAAGTGCATTCATGTC	NA	False	NA	10	True	AATAAA	-19	NA	75820367	75827217	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_75820558_75822483_75822605_75823477_75823970_75825393_75825494_75826513
transcript_90893.known	chr8	+	1569	5	FSM	ENSMUSG00000005413.9	ENSMUST00000005548.8	1569	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	104.358456772798	1157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGAAGTGCATTCATGTC	NA	False	NA	10	True	AATAAA	-19	NA	75820248	75827217	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_75820401_75822483_75822605_75823477_75823970_75825393_75825494_75826513
transcript_90896.known	chr8	+	2604	17	FSM	ENSMUSG00000005410.7	ENSMUST00000212426.2	2604	17	0	0	0	0	multi-exon	FALSE	canonical	3	635	junction_1	269.284113147712	1373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGTGCTGTGTGAATACA	NA	False	NA	32	True	AATAAA	-45	NA	75836203	75854321	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_75836226_75836327_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
transcript_9090.known	chr10	+	566	4	FSM	ENSMUSG00000020022.18	ENSMUST00000179990.8	566	4	0	0	0	0	multi-exon	FALSE	canonical	3	3293	junction_3	309.018877524767	25032	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGTGTCTTGTGCGTTCA	NA	False	NA	13	True	ATTAAA	-13	NA	94034865	94056810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_94034993_94035811_94035895_94039149_94039238_94056542
transcript_90901.known	chr8	+	2653	16	FSM	ENSMUSG00000005410.7	ENSMUST00000212811.2	2653	16	0	0	0	0	multi-exon	FALSE	canonical	3	1402	junction_7	114.72564374774	772	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATAGTAGTGCTGTGTGA	NA	False	NA	27	True	AATAAA	-40	NA	75836251	75854316	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
transcript_90902.known	chr8	+	3381	17	FSM	ENSMUSG00000005410.7	ENSMUST00000164309.3	3381	17	0	0	0	0	multi-exon	FALSE	canonical	3	795	junction_1	234.54782794507	1384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCCTGGCTGAAGTGTTTG	NA	False	NA	1	True	NA	NA	NA	75836196	75855067	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_75836250_75836327_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
transcript_90905.known	chr8	-	1250	1	FSM	ENSMUSG00000110469.2	ENSMUST00000212864.2	1250	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2283	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CCAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-12	NA	76133217	76131967	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_76132000_76133200
transcript_90906.known	chr8	+	2781	12	FSM	ENSMUSG00000037134.18	ENSMUST00000056237.15	2781	12	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_5	20.627751506924	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGTGTATGTAACATTAT	NA	False	NA	13	True	AATAAA	-18	NA	78276025	78307967	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_78276366_78282293_78282443_78285507_78285745_78287435_78287604_78289042_78289146_78290604_78290712_78291582_78291776_78294803_78294988_78298637_78299356_78303966_78304121_78307254_78307378_78307662
transcript_90907.known	chr8	+	2688	12	FSM	ENSMUSG00000037134.18	ENSMUST00000210040.2	2688	12	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	44.8630606944737	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAGTGTATGTAACATTA	NA	False	NA	12	True	AATAAA	-17	NA	78276082	78307966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_78276366_78282293_78282443_78285507_78285745_78287435_78287604_78289077_78289146_78290604_78290712_78291582_78291776_78294803_78294988_78298637_78299356_78303966_78304121_78307254_78307378_78307662
transcript_90910.known	chr8	-	2678	10	FSM	ENSMUSG00000031617.17	ENSMUST00000034030.15	2678	10	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_5	10.9927024053615	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTCTTACGTGTCTTCT	NA	False	NA	-4	True	TTTAAA	-6	NA	78337282	78322610	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_78323810_78324437_78324610_78325182_78325283_78326285_78326399_78328043_78328138_78329486_78329562_78331250_78331457_78332792_78332830_78332915_78333047_78336731
transcript_90915.known	chr8	+	673	3	FSM	ENSMUSG00000037101.17	ENSMUST00000124713.2	673	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	1	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGTTGTAAAAAGAAGATT	NA	False	NA	NA	False	NA	NA	NA	79117610	79120403	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_79118107_79119699_79119767_79120293
transcript_90916.known	chr8	-	377	1	FSM	ENSMUSG00000110057.2	ENSMUST00000209570.2	377	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1523	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGGTTCAATCAGCTGTAC	NA	False	NA	NA	False	NA	NA	NA	79213039	79212662	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_79212700_79213000
transcript_90917.known	chr8	-	1695	2	FSM	ENSMUSG00000037070.11	ENSMUST00000049245.10	1695	2	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_1	0	905	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGTCTTGATTTCTCC	NA	False	NA	NA	False	AGTAAA	-18	NA	79235527	79231897	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_79233493_79235427
transcript_90918.known	chr8	-	1622	2	FSM	ENSMUSG00000037070.11	ENSMUST00000211719.2	1622	2	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_1	0	1272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGCAATTTTCTGTCTTG	NA	False	NA	NA	False	AGTAAA	-10	NA	79235508	79231905	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_79233447_79235427
transcript_9092.known	chr10	-	6566	3	FSM	ENSMUSG00000097164.3	ENSMUST00000181906.3	6566	3	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	6	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTATTAGTGTATGTATT	NA	False	NA	NA	False	NA	NA	NA	94524438	94506886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_94512992_94514192_94514310_94524094
transcript_90920.known	chr8	+	3595	12	FSM	ENSMUSG00000031684.12	ENSMUST00000034111.10	3595	12	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_5	15.4524062690615	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCTGGAAATGTCGTGG	NA	False	NA	32	True	ATTAAA	-17	NA	79235996	79460632	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_79236304_79242214_79242298_79251790_79251928_79257711_79257788_79305347_79305387_79389615_79389652_79413213_79413298_79423794_79423961_79425148_79425201_79433503_79433578_79456246_79456393_79458237
transcript_90935.nnic	chr8	+	1278	6	NNC	ENSMUSG00000031684.12	novel	3485	10	NA	NA	-285	-114102	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	65.5365546851526	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGCTAACTGGTCCACC	9757	False	NA	NA	False	NA	NA	NA	79235689	79260618	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_79236304_79242214_79242298_79251790_79251928_79257711_79257788_79260172_79260329_79260406
transcript_90936.nnic	chr8	+	1299	6	NNC	ENSMUSG00000031684.12	novel	3485	10	NA	NA	-285	-43833	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	52.3159631470166	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAAGGTGGCTCTCTTTCTG	9757	False	NA	NA	False	AATAAA	-17	NA	79235689	79330887	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_79236304_79242214_79242298_79251790_79251928_79257711_79257788_79305347_79305387_79330537
transcript_90937.nic	chr8	+	1196	6	NIC	ENSMUSG00000031684.12	novel	3485	10	NA	NA	-285	167	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	52.7090125120932	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTCTCTGTACATTCAAT	9757	False	NA	NA	False	AAAAAG	-14	NA	79235689	79374887	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_79236304_79242214_79242298_79251790_79251928_79257711_79257788_79305347_79305387_79374640
transcript_90943.known	chr8	-	2107	4	FSM	ENSMUSG00000031683.17	ENSMUST00000051867.7	2107	4	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_3	374.138417641861	2957	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCACAGTTGCCACCATCT	NA	False	NA	NA	False	AGTAAA	-27	NA	79547769	79533079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_79534875_79536575_79536690_79539604_79539710_79547676
transcript_90944.known	chr8	-	3792	5	FSM	ENSMUSG00000031683.17	ENSMUST00000130325.8	3792	5	0	0	0	0	multi-exon	FALSE	canonical	3	636	junction_4	242.43865203387	2104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGATCTTTCCCATCTATG	NA	False	NA	NA	False	GATAAA	-24	NA	79547769	79531493	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_79534875_79536575_79536690_79539604_79539710_79546615_79546715_79547676
transcript_90945.known	chr8	-	483	1	FSM	ENSMUSG00000069986.5	ENSMUST00000093411.5	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTACACAAGGAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	79596497	79596014	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_79596000_79596500
transcript_90954.known	chr8	-	5650	7	FSM	ENSMUSG00000037022.4	ENSMUST00000048718.4	5650	7	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_6	17.5214154679352	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTGTATCTTGTTCTGTA	NA	False	NA	NA	False	AATAAA	-17	NA	80021566	79990226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_79994845_79995761_79995912_79997518_79997605_80000732_80000904_80004830_80004954_80007805_80008284_80021542
transcript_90959.nnic	chr8	-	812	5	NIC	ENSMUSG00000037022.4	novel	5650	7	NA	NA	-73	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_4	28.7782469931718	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGTAGAGTTTCCCTGA	NA	False	NA	-6	True	AATAAA	-17	NA	80021639	79994536	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_79994845_79995761_79995912_79997518_79997605_80000732_80000904_80021542
transcript_90961.known	chr8	-	1685	8	FSM	ENSMUSG00000037022.4	ENSMUST00000210231.2	1685	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	28.5742855714429	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGTAGAGTTTCCCTGA	NA	False	NA	-6	True	AATAAA	-17	NA	80021309	79994536	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_79994845_79995761_79995912_79997518_79997605_80000732_80000904_80004830_80004954_80007809_80008284_80010837_80011076_80021174
transcript_90962.known	chr8	+	3784	3	FSM	ENSMUSG00000097174.3	ENSMUST00000181030.3	3784	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTAAAAAAGAAACCAAAGG	NA	False	NA	NA	False	NA	NA	NA	80021751	80035590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_80022137_80023240_80023281_80032231
transcript_90964.known	chr8	-	3793	18	FSM	ENSMUSG00000058355.9	ENSMUST00000080536.8	3793	18	0	0	0	0	multi-exon	FALSE	canonical	3	1167	junction_10	93.0334984503433	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTTTTTTGACTTCTTT	NA	False	NA	NA	False	AATACA	-13	NA	80438369	80410090	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_80411907_80412573_80412686_80414069_80414193_80414292_80414436_80414523_80414635_80415753_80415813_80415936_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427214_80427312_80427541_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
transcript_90971.nic	chr8	-	657	5	ISM	ENSMUSG00000058355.9	ENSMUST00000211509.2	3030	16	-70	15541	0	6325	5prime_fragment	FALSE	canonical	3	1188	junction_1	118.083392143011	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCTGGATCTTTTATGG	NA	False	NA	NA	False	ATTAAA	-16	NA	80438369	80428375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
transcript_90972.known	chr8	-	3030	16	FSM	ENSMUSG00000058355.9	ENSMUST00000211509.2	3030	16	0	0	0	0	multi-exon	FALSE	canonical	3	1167	junction_8	95.1564793146297	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80438299	80412834	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_80414193_80414292_80414436_80414523_80414635_80415753_80415813_80415936_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427214_80427312_80427541_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
transcript_9098.nnic	chr10	-	366	3	NNC	ENSMUSG00000097164.3	novel	6566	3	NA	NA	-37	-5963	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	10.5	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAGAAGTCACTTGGAAAC	NA	False	NA	NA	False	NA	NA	NA	94524475	94512849	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_94512992_94514192_94514310_94524368
transcript_90988.known	chr8	+	2801	5	FSM	ENSMUSG00000036977.9	ENSMUST00000048147.9	2801	5	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	177.95698216142	673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTCTGTGGATTTATGAC	NA	False	NA	NA	False	NA	NA	NA	80438448	80503949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_80438474_80439733_80439909_80446286_80446378_80455758_80455880_80501560
transcript_90991.known	chr8	+	4591	5	FSM	ENSMUSG00000036977.9	ENSMUST00000210812.2	4591	5	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	166.717388115337	790	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80438479	80505688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_80438604_80439781_80439909_80446286_80446378_80455758_80455880_80501560
transcript_90993.nnic	chr8	+	981	5	NIC	ENSMUSG00000036977.9	novel	4591	5	NA	NA	-20	8	combination_of_known_splicesites	FALSE	canonical	3	40	junction_1	204.767398528184	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGAAGTCAATCTTTAAAT	NA	False	NA	10	True	AATAAA	-28	NA	80438428	80501979	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_80438604_80439733_80439909_80446286_80446378_80455758_80455880_80501560
transcript_9101.known	chr10	+	3639	16	FSM	ENSMUSG00000020024.8	ENSMUST00000020212.6	3639	16	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_13	58.1305045183297	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGTCCACATTTGTTAC	9504	False	NA	NA	False	ATTAAA	-13	NA	94524515	94626715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_94524909_94554713_94554982_94555453_94555605_94561508_94561602_94564452_94564585_94573634_94573887_94575918_94576051_94584802_94584918_94586120_94586266_94586371_94586522_94602303_94602380_94604680_94604839_94606806_94606937_94622605_94622710_94624508_94624699_94625565
transcript_91017.known	chr8	-	9074	13	FSM	ENSMUSG00000064325.5	ENSMUST00000079038.4	9074	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	3.65433532488012	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTTCTTGTGCCCTTTTA	4306	False	NA	-2	True	ATTAAA	-17	NA	80784635	80692481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_80699156_80701623_80701773_80713564_80713647_80715876_80716008_80716874_80716999_80719102_80719225_80723351_80723496_80724083_80724258_80724787_80724940_80770574_80770777_80771679_80771837_80778056_80778250_80783865
transcript_91018.nic	chr8	-	1428	4	ISM	ENSMUSG00000064325.5	ENSMUST00000079038.4	9074	13	10	77977	10	-77977	5prime_fragment	FALSE	canonical	2	10	junction_2	1.24721912892465	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGGAGATAATCTAAGAGA	4316	False	NA	NA	False	AATAAA	-25	NA	80784625	80770458	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_80770777_80771679_80771837_80778056_80778250_80783865
transcript_91022.nnic	chr8	-	3985	10	NNC	ENSMUSG00000031714.10	novel	4870	10	NA	NA	21222	0	at_least_one_novel_splicesite	FALSE	canonical	3	380	junction_6	37.5443770345651	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTGAGCTGTGTTACT	NA	False	NA	-9	True	AATAAA	-15	NA	81585903	81491068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81585823
transcript_91023.known	chr8	-	4985	11	FSM	ENSMUSG00000031714.10	ENSMUST00000210676.2	4985	11	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_4	194.66638127833	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGAGCTGTGTTACTTT	NA	False	NA	-7	True	AATAAA	-17	NA	81607148	81491066	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81502789_81502880_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81606160
transcript_91024.known	chr8	-	4707	10	FSM	ENSMUSG00000038250.10	ENSMUST00000042724.8	4707	10	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_4	8.95392871906924	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCCTACTGTCCTGTTTT	NA	False	NA	-9	True	ATTAAA	-14	NA	81741557	81707361	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_81708610_81711066_81712430_81714115_81714223_81716635_81716730_81719824_81720019_81722310_81722470_81727681_81727784_81731960_81732091_81738795_81738932_81740383
transcript_91026.nic	chr8	+	407	3	ISM	ENSMUSG00000037940.18	ENSMUST00000216387.2	585	6	39776	49253	-6186	5	internal_fragment	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCATGTGGTGTTTTTTGA	NA	False	NA	NA	False	ATTAAA	-16	NA	82610761	82629576	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_82610874_82617339_82617413_82629354
transcript_91029.known	chr8	-	1675	10	FSM	ENSMUSG00000031711.8	ENSMUST00000034147.4	1675	10	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_3	43.069567612422	3129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACTTTTGGTACTGAGTT	NA	False	NA	-17	True	AATAAA	-17	NA	83500789	83490249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83497429_83497501_83497967_83497988_83499508_83499641_83500685
transcript_91037.known	chr8	-	761	8	FSM	ENSMUSG00000031711.8	ENSMUST00000211462.2	761	8	0	0	0	0	multi-exon	FALSE	canonical	2	30	junction_6	164.077259054311	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGATACTGGATACCATG	NA	False	NA	-47	True	NA	NA	NA	83500743	83491026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83499508_83499641_83500685
transcript_91042.known	chr8	-	457	2	FSM	ENSMUSG00000031711.8	ENSMUST00000210958.2	457	2	0	0	0	0	multi-exon	FALSE	canonical	3	495	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACTGAGTGGGAGGCTCC	NA	False	NA	NA	False	AATAGA	-23	NA	83500774	83499272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_83499641_83500685
transcript_91043.known	chr8	+	1636	6	FSM	ENSMUSG00000031710.5	ENSMUST00000034146.5	1636	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.26491106406735	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTAAAGCTTGTCTTTTCG	NA	False	NA	NA	False	AATAAA	-15	NA	84016980	84025081	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_84017338_84018030_84018230_84020516_84020718_84020811_84020914_84021797_84021979_84024485
transcript_91044.known	chr8	-	4319	9	FSM	ENSMUSG00000035151.13	ENSMUST00000053902.4	4319	9	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_4	7.29297607290741	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTCTGTGGATGCTTGA	8170	False	NA	3	True	AATAAA	-23	NA	84059115	84039650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_84043091_84043429_84043564_84044359_84044429_84046042_84046177_84048061_84048192_84049295_84049394_84055740_84055770_84057739_84057888_84058978
transcript_91045.nic	chr8	-	733	6	ISM	ENSMUSG00000035151.13	ENSMUST00000053902.4	4319	9	-16	6351	-16	-1608	5prime_fragment	FALSE	canonical	3	74	junction_1	6.62117814289874	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGCAGTTGCTTCATATT	8154	False	NA	NA	False	AATAAA	-27	NA	84059131	84046001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_84046177_84048061_84048192_84049295_84049394_84055740_84055770_84057739_84057888_84058978
transcript_9105.known	chr10	+	1842	4	FSM	ENSMUSG00000020024.8	ENSMUST00000220352.2	1842	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	88.9044430835715	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAGAAAAGAAAAG	9568	False	NA	NA	False	CATAAA	-34	NA	94524579	94557635	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_94524909_94554713_94554982_94555453_94555605_94556541
transcript_91050.known	chr8	+	3902	15	FSM	ENSMUSG00000002190.14	ENSMUST00000002259.13	3902	15	0	0	0	0	multi-exon	TRUE	canonical	3	7	junction_1	9.63756468519016	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTGTGTGTCTTGCTTTC	NA	False	NA	NA	False	AATAAA	-18	NA	84116495	84155181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_84116607_84122071_84122222_84123630_84123708_84124277_84124337_84126577_84126720_84134782_84134865_84136114_84136308_84136978_84137169_84146832_84146947_84147047_84147199_84149649_84149866_84150701_84150828_84151199_84151363_84152153_84152255_84153154
transcript_91052.known	chr8	+	2293	15	FSM	ENSMUSG00000002190.14	ENSMUST00000109831.3	2293	15	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_5	6.81834260787527	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGAGAGCCAAGAGATTCG	NA	False	NA	12	True	AATAAA	-18	NA	84116506	84153460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_84116730_84122071_84122222_84123630_84123708_84124277_84124337_84126577_84126720_84134782_84134865_84136114_84136308_84136978_84137169_84146832_84146947_84147047_84147199_84149649_84149866_84150701_84150828_84151199_84151363_84152153_84152255_84153154
transcript_91061.known	chr8	-	409	4	FSM	ENSMUSG00000063253.12	ENSMUST00000212031.2	409	4	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_1	12.1928941054479	169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGCTGCTTTTTTTCTTCC	7419	False	NA	NA	False	AGTAAA	-26	NA	84169134	84162500	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_84162670_84164181_84164266_84164613_84164686_84169050
transcript_91066.known	chr8	+	623	3	FSM	ENSMUSG00000033938.6	ENSMUST00000036996.6	623	3	0	0	0	0	multi-exon	FALSE	canonical	3	2087	junction_2	87.5	15091	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATCTGTGCTACTTCAA	NA	False	NA	23	True	AATAAA	-23	NA	84293299	84298255	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_84293560_84297458_84297628_84298061
transcript_9108.known	chr10	-	1115	3	FSM	ENSMUSG00000045867.11	ENSMUST00000217809.2	1115	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	28	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCCTCTTTCAATGAGAG	NA	False	NA	2	True	AATAAA	-22	NA	95159427	95011126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_95011841_95158447_95158752_95159330
transcript_9109.known	chr10	-	1661	3	FSM	ENSMUSG00000045867.11	ENSMUST00000053594.7	1661	3	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	28.5	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAAGTGCGTGTCCATT	NA	False	NA	NA	False	ATTAAA	-13	NA	95159970	95010607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_95011841_95158447_95158752_95159846
transcript_91093.known	chr8	-	1158	13	FSM	ENSMUSG00000031708.18	ENSMUST00000019382.17	1158	13	0	0	0	0	multi-exon	FALSE	canonical	3	3555	junction_3	302.48290814891	9130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACTGTGTGTTCTTTA	NA	False	NA	-5	True	AATAAA	-13	NA	84321106	84298328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300039_84300085_84300499_84300552_84301106_84301158_84320968
transcript_91094.known	chr8	-	1120	12	FSM	ENSMUSG00000031708.18	ENSMUST00000165740.9	1120	12	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_9	1051.54616581631	2386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACTGTGTGTTCTTTA	NA	False	NA	-5	True	AATAAA	-13	NA	84321113	84298328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300499_84300552_84301106_84301158_84320968
transcript_91095.known	chr8	-	648	7	FSM	ENSMUSG00000031708.18	ENSMUST00000212990.2	648	7	0	0	0	0	multi-exon	FALSE	canonical	3	3555	junction_3	216.890461344482	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTGTGTGTTCTTTAGG	NA	False	NA	-3	True	AATAAA	-15	NA	84299569	84298326	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469
transcript_91096.known	chr8	-	1272	13	FSM	ENSMUSG00000031708.18	ENSMUST00000163837.2	1272	13	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_10	1132.45025644985	753	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACTGTGTGTTCTTTA	NA	False	NA	-5	True	AATAAA	-13	NA	84321058	84298328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300039_84300085_84300337_84300552_84301106_84301158_84320968
transcript_91097.known	chr8	-	878	8	FSM	ENSMUSG00000031708.18	ENSMUST00000212005.2	878	8	0	0	0	0	multi-exon	FALSE	canonical	3	3555	junction_3	211.176587292266	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACTGTGTGTTCTTTA	NA	False	NA	-5	True	AATAAA	-13	NA	84299882	84298328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656
transcript_91100.known	chr8	+	2996	3	FSM	ENSMUSG00000005483.11	ENSMUST00000005620.10	2996	3	0	0	0	0	multi-exon	FALSE	canonical	3	562	junction_2	45.5	650	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATACGAGGTGCTCGGCT	NA	False	NA	NA	False	AATAAA	-23	NA	84334821	84339282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_84335172_84336442_84337024_84337217
transcript_91102.known	chr8	+	2854	3	FSM	ENSMUSG00000005483.11	ENSMUST00000212300.2	2854	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	281	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATACGAGGTGCTCGGCT	NA	False	NA	NA	False	AATAAA	-23	NA	84335181	84339282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_84335390_84336442_84337024_84337217
transcript_91107.known	chr8	+	1522	7	FSM	ENSMUSG00000019433.10	ENSMUST00000019577.10	1522	7	0	0	0	0	multi-exon	FALSE	canonical	3	964	junction_1	101.245027312731	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGAACTCATTCTGTAGAC	NA	False	NA	16	True	NA	NA	NA	84379305	84391323	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_84379367_84387587_84387910_84388583_84388770_84388863_84389045_84389677_84389791_84390548_84390631_84390746
transcript_91108.known	chr8	-	2995	22	FSM	ENSMUSG00000057672.17	ENSMUST00000144258.8	2995	22	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_21	57.6705790816251	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCAGCCTCTGTGTGCA	NA	False	NA	-18	True	TTTAAA	-33	NA	84420689	84396719	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_84396998_84397367_84397449_84397550_84397659_84397927_84398071_84398345_84398423_84398535_84398599_84398784_84398962_84399930_84400023_84400109_84400186_84400259_84400340_84404152_84404247_84404334_84404477_84404559_84404636_84407582_84407727_84407808_84407919_84410027_84410223_84410631_84410846_84411264_84411411_84413668_84413814_84417677_84417830_84419264_84419566_84420588
transcript_91109.known	chr8	-	6662	22	FSM	ENSMUSG00000057672.17	ENSMUST00000005616.16	6662	22	0	0	0	0	multi-exon	TRUE	canonical	3	231	junction_13	29.0604187256126	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACTGGAAAATGTGAGC	NA	False	NA	-9	True	AATAAA	-14	NA	84425808	84393164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_84396998_84397367_84397449_84397550_84397659_84397927_84398071_84398345_84398423_84398535_84398599_84398784_84398962_84399930_84400023_84400109_84400186_84400259_84400340_84404152_84404247_84404334_84404477_84404559_84404636_84407582_84407727_84407808_84407919_84410027_84410223_84410631_84410846_84411264_84411411_84413668_84413814_84417677_84417830_84419264_84419566_84425595
transcript_91114.known	chr8	-	2867	19	FSM	ENSMUSG00000002885.15	ENSMUST00000109802.3	2867	19	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_15	26.9886235749276	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCACGTTTGCTGGTGA	NA	False	NA	-11	True	ATTAAA	-19	NA	84467802	84449992	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_84450532_84450607_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84456739_84456887_84460042_84460196_84460637_84460755_84460924_84460982_84467735
transcript_91115.known	chr8	+	1656	11	FSM	ENSMUSG00000005481.19	ENSMUST00000019576.15	1656	11	0	0	0	0	multi-exon	FALSE	canonical	3	2216	junction_5	95.6715736256073	2957	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAAACGTGCCATCTTTTT	NA	False	NA	99	True	NA	NA	NA	84441805	84449977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
transcript_91116.known	chr8	+	1927	11	FSM	ENSMUSG00000005481.19	ENSMUST00000127505.8	1927	11	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_5	947.235852362019	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGCATGGCTCCAGCCCC	NA	False	NA	25	True	AATAAA	-11	NA	84441896	84449903	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448094_84448154_84448362_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
transcript_91117.known	chr8	+	1551	12	FSM	ENSMUSG00000005481.19	ENSMUST00000140521.8	1551	12	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_5	911.296107223839	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCATGGCTCCAGCCCCA	NA	False	NA	26	True	AATAAA	-12	NA	84441896	84449904	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448094_84448154_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
transcript_91118.known	chr8	+	1794	11	FSM	ENSMUSG00000005481.19	ENSMUST00000109810.2	1794	11	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_1	682.0140834323	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAAACGTGCCATCTTTTT	NA	False	NA	99	True	NA	NA	NA	84442176	84449977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_84442476_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
transcript_91119.known	chr8	-	3000	20	FSM	ENSMUSG00000002885.15	ENSMUST00000075843.13	3000	20	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_16	54.4176930653952	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCACGTTTGCTGGTGAGA	NA	False	NA	-9	True	ATTAAA	-21	NA	84467798	84449990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_84450532_84450607_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84456739_84456887_84458531_84458667_84460042_84460196_84460637_84460755_84460924_84460982_84467735
transcript_91126.known	chr8	+	1788	4	FSM	ENSMUSG00000005470.9	ENSMUST00000005607.9	1788	4	0	0	0	0	multi-exon	FALSE	canonical	3	543	junction_2	3.39934634239519	1665	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTTGCTTTTTTCTCTC	5716	False	NA	23	True	AATAAA	-16	NA	84682135	84696826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_84682567_84691659_84691776_84694462_84694640_84695762
transcript_91127.known	chr8	+	1399	10	FSM	ENSMUSG00000005469.11	ENSMUST00000211558.2	1399	10	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	224.880269927064	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGGGAAGGGGCAACATCA	108	False	NA	NA	False	NA	NA	NA	84703511	84722223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_84703724_84707402_84707465_84707800_84707930_84713465_84713565_84714911_84714995_84717056_84717184_84717270_84717367_84717491_84717615_84721423_84721589_84721920
transcript_91129.known	chr8	-	1351	3	FSM	ENSMUSG00000074217.9	ENSMUST00000190457.2	1351	3	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_2	17	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGTGCAAGCTATTTTC	7533	False	NA	-9	True	AATAAA	-22	NA	84738787	84736850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_84737122_84737339_84737402_84737769
transcript_9113.known	chr10	-	717	3	FSM	ENSMUSG00000045867.11	ENSMUST00000220446.2	717	3	0	0	0	0	multi-exon	FALSE	canonical	2	22	junction_1	4	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCAGTAGATTTCCAGAG	NA	False	NA	NA	False	AATAAA	-25	NA	95159549	95157609	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_95157804_95158447_95158752_95159330
transcript_91131.known	chr8	-	2664	14	FSM	ENSMUSG00000005465.10	ENSMUST00000005601.9	2664	14	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_12	6.10848667572056	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGCCAGAGTGCCTTAAC	5259	False	NA	NA	False	NA	NA	NA	84769218	84756922	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_84757822_84757941_84758051_84758147_84758239_84758645_84758772_84760579_84760739_84760820_84760923_84762713_84762903_84762991_84763176_84765924_84765999_84766106_84766264_84767302_84767461_84767560_84767719_84768715_84768834_84769078
transcript_91132.known	chr8	+	2452	7	FSM	ENSMUSG00000047986.13	ENSMUST00000055077.7	2452	7	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	39.9110121255887	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGATTTATTTATT	NA	False	NA	11	True	ATTAAA	-24	NA	84748099	84756924	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_84748158_84750980_84751030_84752822_84752904_84753377_84753521_84753628_84753714_84754754_84754801_84754934
transcript_91135.nic	chr8	+	2464	5	ISM	ENSMUSG00000047986.13	ENSMUST00000055077.7	2452	7	4604	0	0	0	3prime_fragment	FALSE	canonical	3	94	junction_2	4.49305018890286	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGATTTATTTATT	NA	False	NA	11	True	ATTAAA	-24	NA	84752703	84756924	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_84752904_84753377_84753521_84753628_84753714_84754754_84754801_84754934
transcript_91137.known	chr8	-	527	2	FSM	ENSMUSG00000005465.10	ENSMUST00000210790.2	527	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGTACGACATCGGGCA	5308	False	NA	NA	False	AAGAAA	-34	NA	84769169	84768397	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_84768834_84769078
transcript_91138.known	chr8	-	634	2	FSM	ENSMUSG00000045232.5	ENSMUST00000061923.5	634	2	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	0	199	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGCCCCTCCTCTATCCA	2848	False	NA	NA	False	NA	NA	NA	84771629	84769557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_84769961_84771398
transcript_91140.known	chr8	+	4172	21	FSM	ENSMUSG00000031706.8	ENSMUST00000005600.6	4172	21	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	9.14002188181188	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTACTGATGACGAGAGCA	NA	False	NA	21	True	AATAAA	-17	NA	84793464	84823621	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_84793678_84800359_84800699_84806491_84806602_84806753_84806838_84807743_84807852_84809276_84809391_84810710_84810804_84812201_84812297_84814334_84814702_84816739_84816922_84817578_84817699_84817994_84818108_84819163_84819283_84819408_84819519_84819602_84819755_84819831_84819930_84821355_84821506_84821578_84821788_84822024_84822179_84822256_84822303_84822425
transcript_91141.known	chr8	-	2312	13	FSM	ENSMUSG00000037103.9	ENSMUST00000041367.9	2312	13	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	56.6688112339289	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGGTGTCCTGTTCTGT	9263	False	NA	-3	True	ACTAAA	-17	NA	84831391	84823700	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_84824138_84824251_84824482_84824564_84824670_84824827_84824914_84824990_84825120_84825207_84825300_84825386_84825822_84828304_84828476_84828560_84828701_84828792_84828900_84829374_84829511_84829584_84829683_84831245
transcript_91142.known	chr8	-	2199	13	FSM	ENSMUSG00000037103.9	ENSMUST00000210279.2	2199	13	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_7	21.0218140669797	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGGTGTCCTGTTCTGT	9262	False	NA	-3	True	ACTAAA	-17	NA	84831392	84823700	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_84824138_84824365_84824482_84824564_84824670_84824827_84824914_84824990_84825120_84825207_84825300_84825386_84825822_84828304_84828476_84828560_84828701_84828792_84828900_84829374_84829511_84829584_84829683_84831245
transcript_91149.known	chr8	-	3471	29	FSM	ENSMUSG00000036686.17	ENSMUST00000040383.9	3471	29	0	0	0	0	multi-exon	TRUE	canonical	3	61	junction_17	12.7601500215095	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTGTCTTTTTGTCCTTG	NA	False	NA	-1	True	AATGAA	-24	NA	84874565	84859456	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_84859887_84859960_84860009_84860092_84860170_84860392_84860520_84860605_84860670_84861104_84861167_84861250_84861389_84861525_84861617_84861690_84861791_84862233_84862286_84862386_84862446_84862515_84862590_84863367_84863485_84863558_84863618_84863698_84863822_84865089_84865263_84865346_84865459_84865918_84866053_84866869_84866943_84867012_84867144_84867234_84867307_84867391_84867465_84867709_84867829_84869915_84870139_84870236_84870372_84870586_84870653_84870737_84870851_84872942_84873079_84874275
transcript_91152.known	chr8	+	2366	9	FSM	ENSMUSG00000008129.15	ENSMUST00000118856.8	2366	9	0	0	0	0	multi-exon	TRUE	canonical	2	9	junction_1	4.49826355386165	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCTGATCTGTAGCTGTG	2017	False	NA	5	True	AATAAA	-15	NA	84874787	84899219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_84875028_84875466_84875515_84886073_84886237_84887841_84887921_84888928_84889034_84893209_84894320_84896983_84897082_84898446_84898540_84898789
transcript_91161.known	chr8	-	434	2	FSM	ENSMUSG00000056155.7	ENSMUST00000211482.2	434	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTTGGGACAAGGTGGT	NA	False	NA	-3	True	AATAAA	-17	NA	84911846	84900359	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_84900602_84911654
transcript_91162.known	chr8	-	730	2	FSM	ENSMUSG00000056155.7	ENSMUST00000070102.6	730	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGTCTTGGGACAAGGTG	NA	False	NA	-5	True	AATAAA	-15	NA	84903181	84900361	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_84900602_84902691
transcript_91163.known	chr8	-	692	2	FSM	ENSMUSG00000056155.7	ENSMUST00000210202.2	692	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATCCAATAAATGCTAAGG	NA	False	NA	-31	True	NA	NA	NA	84903181	84900387	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_84900602_84902703
transcript_91164.known	chr8	+	690	1	FSM	ENSMUSG00000097296.2	ENSMUST00000180630.2	690	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGTAAGGGCTGACGTCT	NA	False	NA	NA	False	AATAAA	-16	NA	84935548	84936238	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_84935500_84936200
transcript_91167.known	chr8	-	616	3	FSM	ENSMUSG00000019362.9	ENSMUST00000019506.9	616	3	0	0	0	0	multi-exon	FALSE	canonical	3	1764	junction_2	46	10856	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGCTGTGTGCTGTTTGGT	9834	False	NA	-7	True	AATAAA	-12	NA	84976348	84972866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_84973323_84976102_84976159_84976244
transcript_91169.known	chr8	-	2819	5	FSM	ENSMUSG00000004996.10	ENSMUST00000126435.8	2819	5	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_2	18.1159460144923	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGTTTTACAATACACAAA	6966	False	NA	NA	False	NA	NA	NA	84983953	84976534	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_84978341_84980491_84980717_84980804_84980982_84982872_84983049_84983518
transcript_9117.known	chr10	-	1613	2	FSM	ENSMUSG00000045867.11	ENSMUST00000220279.2	1613	2	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAAGTGCGTGTCCATT	NA	False	NA	NA	False	ATTAAA	-13	NA	95158827	95010607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_95011841_95158447
transcript_91171.known	chr8	-	1065	2	FSM	ENSMUSG00000004996.10	ENSMUST00000127747.2	1065	2	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAAAAATAAATACTT	6964	False	NA	NA	False	NA	NA	NA	84983955	84982420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_84983049_84983518
transcript_91175.known	chr8	-	2119	10	FSM	ENSMUSG00000004994.13	ENSMUST00000098578.10	2119	10	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_9	31.8437543540021	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGCTGGAATTAAAATCT	NA	False	NA	NA	False	NA	NA	NA	84997009	84984423	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_84985556_84985741_84985881_84986922_84987096_84987171_84987315_84988368_84988430_84989621_84989678_84990490_84990574_84990937_84990992_84993464_84993704_84996970
transcript_91177.known	chr8	-	1441	9	FSM	ENSMUSG00000004994.13	ENSMUST00000005120.12	1441	9	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	76.6823806359714	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGCCTTGTTTCTAAACT	NA	False	NA	-22	True	ATTAAA	-15	NA	84996976	84984929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_84985556_84986922_84987096_84987171_84987315_84988368_84988430_84989621_84989678_84990490_84990574_84990937_84990992_84993464_84993704_84996970
transcript_9118.known	chr10	+	1056	2	FSM	ENSMUSG00000112593.2	ENSMUST00000218132.2	1056	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTAATTTTGCTATGTT	NA	False	NA	NA	False	NA	NA	NA	95154108	95160220	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_95154552_95159607
transcript_91187.known	chr8	+	1153	5	FSM	ENSMUSG00000034656.19	ENSMUST00000141981.8	1153	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	8.95474734428616	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGCCAACATAATCTACAC	NA	False	NA	NA	False	NA	NA	NA	85328072	85339671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85328135_85328384_85328451_85328552_85328669_85338226_85338378_85338913
transcript_912.known	chr1	-	666	1	FSM	ENSMUSG00000025917.10	ENSMUST00000191296.2	666	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAATCC	NA	False	NA	NA	False	TATAAA	-23	NA	10108170	10107504	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_10107500_10108200
transcript_91204.nnic	chr8	-	981	2	Antisense	novelGene_ENSMUSG00000034656.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGTGTTCATGGCTGCCT	7754	False	NA	NA	False	AATAAA	-19	NA	85328666	85309668	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr8_-_85310375_85328391
transcript_91207.known	chr8	-	1524	1	FSM	ENSMUSG00000053560.6	ENSMUST00000060427.6	1524	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4532	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGCTTGTCTGGCTTGCTT	NA	False	NA	-1	True	AATAAA	-20	NA	85389483	85387959	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_85388000_85389500
transcript_91213.known	chr8	+	2138	17	FSM	ENSMUSG00000001909.17	ENSMUST00000109767.9	2138	17	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	116.091541869983	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGTCATTTTGAATTGG	NA	False	NA	15	True	AATAAA	-15	NA	85415875	85426416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85415979_85416260_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
transcript_91217.nic	chr8	+	2082	17	NIC	ENSMUSG00000001909.17	novel	2044	17	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	129	junction_1	113.375964714749	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85415881	85426415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_85416006_85416336_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
transcript_9122.nnic	chr10	+	558	4	NNC	ENSMUSG00000100550.3	novel	3743	2	NA	NA	3072	3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	4.71404520791032	17	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGGAGGTTGGGAAGTC	NA	False	NA	NA	False	NA	NA	NA	95193821	95199074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_95193983_95194128_95194221_95197907_95197947_95198808
transcript_91220.known	chr8	+	2567	17	FSM	ENSMUSG00000001909.17	ENSMUST00000001974.11	2567	17	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_1	103.16006979447	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCATCTGCATGGGGGAC	NA	False	NA	36	True	AATAAA	-36	NA	85415494	85426437	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85416006_85416260_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
transcript_91224.known	chr8	+	2044	17	FSM	ENSMUSG00000001909.17	ENSMUST00000109768.9	2044	17	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	132.785409001705	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85415892	85426415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85415979_85416336_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
transcript_9125.nnic	chr10	+	523	3	NNC	ENSMUSG00000100550.3	novel	642	3	NA	NA	3072	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	6	117	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGTTGGGAAGTCAAGA	NA	False	NA	NA	False	NA	NA	NA	95193821	95199078	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_95193983_95194128_95194221_95198808
transcript_91263.known	chr8	+	3647	15	FSM	ENSMUSG00000001909.17	ENSMUST00000137953.8	3647	15	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	120.800814296485	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCATCTGCATGGGGGAC	NA	False	NA	36	True	AATAAA	-36	NA	85415911	85426437	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85415979_85416260_85416538_85417145_85417577_85417880_85418069_85421850_85421967_85422056_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
transcript_91264.known	chr8	+	502	3	FSM	ENSMUSG00000001909.17	ENSMUST00000175767.2	502	3	0	0	0	0	multi-exon	FALSE	canonical	3	591	junction_1	22	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	4121	False	NA	14	True	AATAAA	-14	NA	85425699	85426415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85425888_85425969_85426100_85426231
transcript_91265.known	chr8	+	895	6	FSM	ENSMUSG00000001909.17	ENSMUST00000077990.11	895	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	233.344894951657	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGTTATGCAGTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	85415917	85418676	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85415979_85416260_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85418500
transcript_91266.known	chr8	+	2114	15	FSM	ENSMUSG00000001909.17	ENSMUST00000125370.10	2114	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	150.536472629847	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTTGTCATTTTGAATT	NA	False	NA	13	True	AATAAA	-13	NA	85416092	85426414	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
transcript_91267.nnic	chr8	-	512	4	NNC	ENSMUSG00000001911.17	novel	1403	9	NA	NA	-8873	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1.69967317119759	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTTCCTCAAAATGGGGG	NA	False	NA	NA	False	AAAAAG	-14	NA	85449570	85435242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_85435307_85440394_85440487_85448271_85448448_85449390
transcript_91268.known	chr8	+	721	2	FSM	ENSMUSG00000074203.5	ENSMUST00000098571.5	721	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGTGGTGGCTCACATCT	NA	False	NA	NA	False	ATTAAA	-15	NA	85449635	85453473	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85449901_85453017
transcript_91276.known	chr8	+	2494	2	FSM	ENSMUSG00000033751.6	ENSMUST00000036734.6	2494	2	0	0	0	0	multi-exon	FALSE	canonical	3	736	junction_1	0	1727	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATATATATACTTTCTC	2674	False	NA	NA	False	NA	NA	NA	85558150	85562111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85559270_85560736
transcript_91277.known	chr8	-	1369	2	FSM	ENSMUSG00000053226.8	ENSMUST00000238279.2	1369	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTGTGCGTGCTTCTTTCT	399	False	NA	0	True	CATAAA	-15	NA	85559038	85542033	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_85543163_85558798
transcript_91279.known	chr8	-	2074	9	FSM	ENSMUSG00000003813.16	ENSMUST00000003911.13	2074	9	0	0	0	0	multi-exon	TRUE	canonical	3	805	junction_3	189.238440862315	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCCATCTGCTCCTTCA	NA	False	NA	NA	False	NA	NA	NA	85567270	85561280	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_85562304_85562383_85562549_85564088_85564220_85564317_85564397_85564635_85564764_85564901_85564958_85565097_85565280_85565422_85565585_85567122
transcript_91280.known	chr8	-	1842	9	FSM	ENSMUSG00000003813.16	ENSMUST00000109761.9	1842	9	0	0	0	0	multi-exon	FALSE	canonical	3	614	junction_3	246.139156525328	1347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAGCTTCTCACAGCTGT	NA	False	NA	-14	True	AATAAA	-37	NA	85567294	85561539	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_85562304_85562383_85562549_85564088_85564223_85564317_85564397_85564635_85564764_85564901_85564958_85565097_85565280_85565422_85565585_85567122
transcript_91285.known	chr8	+	479	2	FSM	ENSMUSG00000087685.2	ENSMUST00000147538.2	479	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACTGGCTGCTCTTCTGA	NA	False	NA	NA	False	NA	NA	NA	85573816	85575044	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85573950_85574698
transcript_91290.known	chr8	+	1708	13	FSM	ENSMUSG00000003808.19	ENSMUST00000156970.8	1708	13	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	180.621996322584	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGTTGTCATTCATTTC	NA	False	NA	37	True	AATAAA	-37	NA	85583648	85595885	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85583811_85587534_85587587_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594091_85594177_85594278_85594378_85594548_85594637_85594716_85594852_85594968_85595494
transcript_91291.known	chr8	+	1920	12	FSM	ENSMUSG00000003808.19	ENSMUST00000129595.8	1920	12	0	0	0	0	multi-exon	FALSE	canonical	3	583	junction_4	51.0548238790647	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGTTGTCATTCATTTC	NA	False	NA	37	True	AATAAA	-37	NA	85583623	85595885	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594091_85594177_85594548_85594637_85594716_85594852_85594968_85595494
transcript_91292.known	chr8	+	3341	7	FSM	ENSMUSG00000003808.19	ENSMUST00000144404.8	3341	7	0	0	0	0	multi-exon	FALSE	canonical	3	583	junction_4	53.3187480056395	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAAAAAAAACAAGAA	NA	False	NA	NA	False	NA	NA	NA	85583637	85593655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065
transcript_91293.known	chr8	+	1795	13	FSM	ENSMUSG00000003808.19	ENSMUST00000109754.2	1795	13	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_9	182.281585435526	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTGTCATTCATTTCA	NA	False	NA	38	True	AATAAA	-38	NA	85583645	85595886	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594091_85594177_85594278_85594381_85594548_85594637_85594716_85594852_85594968_85595494
transcript_91294.known	chr8	-	2114	12	FSM	ENSMUSG00000003809.15	ENSMUST00000109745.8	2114	12	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_11	27.3803935401452	863	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATACTTTGGCTTCTCAA	NA	False	NA	-5	True	AATAAA	-9	NA	85620550	85613021	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_85613683_85615155_85615317_85615890_85616017_85616210_85616315_85617339_85617557_85617641_85617772_85619030_85619202_85619459_85619523_85619649_85619794_85620076_85620104_85620183_85620314_85620370
transcript_91297.known	chr8	-	2167	11	FSM	ENSMUSG00000003809.15	ENSMUST00000003907.14	2167	11	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_6	21.1293634546808	586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATACTTTGGCTTCTCAA	NA	False	NA	-5	True	AATAAA	-9	NA	85620546	85613021	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_85613683_85615155_85615317_85615890_85616017_85616210_85616315_85617339_85617557_85617641_85617772_85619030_85619202_85619459_85619523_85619649_85619794_85620076_85620104_85620183
transcript_913.known	chr1	+	1356	1	FSM	ENSMUSG00000056763.17	ENSMUST00000190610.2	1356	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATAAAAATAGAATCTT	NA	False	NA	NA	False	NA	NA	NA	10108211	10109567	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_10108200_10109600
transcript_9131.known	chr10	-	605	3	FSM	ENSMUSG00000020027.19	ENSMUST00000150432.8	605	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	233.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTAGAGATAGTTCGCATT	NA	False	NA	NA	False	ATTAAA	-25	NA	95251346	95248899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_95248973_95250692_95251054_95251175
transcript_91313.known	chr8	+	685	4	FSM	ENSMUSG00000003824.13	ENSMUST00000003922.6	685	4	0	0	0	0	multi-exon	FALSE	canonical	3	832	junction_2	470.355184940062	1445	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTCCTTTGCTCTTTCCC	NA	False	NA	91	True	AAAACA	-4	NA	85598821	85614085	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85598883_85599348_85599462_85612563_85612753_85613763
transcript_91319.nnic	chr8	+	1519	7	NNC	ENSMUSG00000003812.14	novel	1715	6	NA	NA	0	-44	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	34.0864912962436	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAACAAGAAAAAGAGAA	NA	False	NA	-34	True	NA	NA	NA	85635188	85638046	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_85635500_85635613_85635792_85635885_85635965_85636154_85636320_85636400_85636599_85637314_85637821_85637964
transcript_9133.known	chr10	-	623	3	FSM	ENSMUSG00000020027.19	ENSMUST00000129942.2	623	3	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_2	245	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGCTCCAGAAGGAACTT	NA	False	NA	NA	False	ATTAAA	-1	NA	95252074	95248923	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_95248973_95250692_95251054_95251861
transcript_91330.known	chr8	+	1958	6	FSM	ENSMUSG00000003812.14	ENSMUST00000109744.8	1958	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	35.6796860972739	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGTAACCTTTTTCTTAA	NA	False	NA	9	True	AATACA	-19	NA	85635188	85638337	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85635504_85635613_85635792_85635885_85635965_85636154_85636320_85636400_85636599_85637314
transcript_9135.known	chr10	-	497	3	FSM	ENSMUSG00000020027.19	ENSMUST00000135822.8	497	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	247	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACTAACTATATCCGTTAA	NA	False	NA	NA	False	NA	NA	NA	95253042	95248871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_95248973_95250692_95251054_95253007
transcript_9136.known	chr10	-	874	2	FSM	ENSMUSG00000020027.19	ENSMUST00000134918.2	874	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGCTGCTCAAGATCAAAT	NA	False	NA	NA	False	TTTAAA	-43	NA	95250689	95248281	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_95248973_95250506
transcript_9137.known	chr10	-	2222	3	FSM	ENSMUSG00000020027.19	ENSMUST00000020215.16	2222	3	0	0	0	0	multi-exon	FALSE	canonical	3	447	junction_2	23.5	548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTGAGTTGTAGGTGTA	NA	False	NA	2	True	AATAAA	-32	NA	95252719	95247351	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_95248973_95250692_95251054_95252479
transcript_91371.nnic	chr8	+	1303	3	NNC	ENSMUSG00000003812.14	novel	1118	3	NA	NA	-162	0	intron_retention	FALSE	canonical	3	13	junction_1	44.5	117	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACATATAGAGTGGGGGTG	NA	False	NA	4	True	AATAAA	-16	NA	85639857	85649544	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_85640158_85646999_85647134_85648675
transcript_91373.known	chr8	+	1118	3	FSM	ENSMUSG00000003812.14	ENSMUST00000148573.2	1118	3	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	1.5	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACATATAGAGTGGGGGTG	NA	False	NA	4	True	AATAAA	-16	NA	85640019	85649544	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85640158_85647022_85647134_85648675
transcript_91380.known	chr8	+	4073	7	FSM	ENSMUSG00000003812.14	ENSMUST00000128400.2	4073	7	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_4	11.7567947256989	612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTTCTCTTTCATCTAG	NA	False	NA	NA	False	NA	NA	NA	85635349	85641150	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85635500_85635613_85635792_85635885_85635965_85636154_85636320_85636400_85636599_85637314_85640158_85640690
transcript_91386.known	chr8	-	2981	10	FSM	ENSMUSG00000052926.17	ENSMUST00000109736.9	2981	10	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_9	446.653979919331	2592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACTATGTTATCTATTT	4554	False	NA	-7	True	NA	NA	NA	85696369	85683238	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_85684494_85684594_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488_85692917_85694291_85694498_85695914
transcript_914.known	chr1	-	1698	8	FSM	ENSMUSG00000025917.10	ENSMUST00000027050.10	1698	8	0	0	0	0	multi-exon	FALSE	canonical	3	713	junction_7	104.105715501119	3722	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCCTGACTGGCCTGAGT	NA	False	NA	-1	True	AGTAAA	-40	NA	10108352	10094825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_10095289_10097327_10097477_10100823_10100936_10102563_10102650_10103482_10103549_10104232_10104362_10105153_10105389_10107894
transcript_91428.known	chr8	+	1590	6	FSM	ENSMUSG00000005161.16	ENSMUST00000109733.8	1590	6	0	0	0	0	multi-exon	FALSE	canonical	3	752	junction_1	1259.55458793972	1677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCTCTAGGCTCTGACCC	NA	False	NA	NA	False	AATAAA	-37	NA	85696395	85701463	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85696638_85696868_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
transcript_91432.known	chr8	-	1809	1	FSM	ENSMUSG00000052837.8	ENSMUST00000064922.7	1809	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	313	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTGGTCTCTTTTTTC	NA	False	NA	-1	True	AGTAAA	-21	NA	85705347	85703538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_85703500_85705300
transcript_91433.known	chr8	+	1500	6	FSM	ENSMUSG00000005161.16	ENSMUST00000005292.15	1500	6	0	0	0	0	multi-exon	FALSE	canonical	3	3496	junction_3	236.69169820676	18881	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCTCTAGGCTCTGACCC	NA	False	NA	NA	False	AATAAA	-37	NA	85696239	85701463	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85696392_85696868_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
transcript_91434.known	chr8	-	1006	8	FSM	ENSMUSG00000052926.17	ENSMUST00000065049.15	1006	8	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	398.770508397182	1275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACCGAGTGCTTTGTGG	8253	False	NA	-8	True	AATAAA	-14	NA	85692670	85684295	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_85684483_85684594_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488
transcript_91435.known	chr8	-	1141	7	FSM	ENSMUSG00000052926.17	ENSMUST00000128972.9	1141	7	0	0	0	0	multi-exon	FALSE	canonical	3	1021	junction_4	88.9793983646402	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACCGAGTGCTTTGTGG	8230	False	NA	-8	True	AATAAA	-14	NA	85692693	85684295	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488
transcript_91436.known	chr8	-	338	2	FSM	ENSMUSG00000052926.17	ENSMUST00000126029.2	338	2	0	0	0	0	multi-exon	FALSE	canonical	3	1124	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTTCAAGAAGTGGACCGA	NA	False	NA	-19	True	AATAAA	-3	NA	85684745	85684306	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_85684494_85684594
transcript_91437.known	chr8	+	1175	5	FSM	ENSMUSG00000005161.16	ENSMUST00000164807.2	1175	5	0	0	0	0	multi-exon	FALSE	canonical	3	3496	junction_2	252.757171015977	1722	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAATAGGGGT	NA	False	NA	NA	False	NA	NA	NA	85696867	85701289	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
transcript_91438.known	chr8	+	1612	6	FSM	ENSMUSG00000005161.16	ENSMUST00000109734.8	1612	6	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_1	1434.62463383284	2999	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCTCTAGGCTCTGACCC	NA	False	NA	NA	False	AATAAA	-37	NA	85696215	85701463	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85696392_85696780_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
transcript_91439.known	chr8	+	993	5	FSM	ENSMUSG00000005161.16	ENSMUST00000143402.3	993	5	0	0	0	0	multi-exon	FALSE	canonical	3	3496	junction_3	263.896760116527	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACATAAAATAAAAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	85696322	85698732	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85696392_85696868_85696974_85697064_85697219_85697915_85698039_85698190
transcript_91442.nnic	chr8	+	1029	6	NIC	ENSMUSG00000052566.9	novel	2580	22	NA	NA	-373	0	intron_retention	FALSE	canonical	3	15	junction_1	172.989710676676	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCGTTTTTGCCTATCTG	NA	False	NA	18	True	AATAAA	-14	NA	85724746	85729978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_85724921_85727783_85727867_85727949_85728054_85729132_85729244_85729315_85729388_85729493
transcript_91444.known	chr8	+	2580	22	FSM	ENSMUSG00000052566.9	ENSMUST00000064495.8	2580	22	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_11	39.7071479254288	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCGTTTTTGCCTATCTG	NA	False	NA	18	True	AATAAA	-14	NA	85717245	85729978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85717382_85717847_85717934_85718005_85718079_85719812_85719864_85719952_85720086_85720203_85720272_85720616_85720680_85721089_85721171_85721250_85721412_85721504_85721646_85722364_85722567_85723583_85723695_85723792_85723881_85724007_85724078_85724628_85724767_85724832_85724921_85725118_85725154_85727783_85727867_85727949_85728054_85729132_85729244_85729315_85729388_85729493
transcript_91445.known	chr8	+	2516	23	FSM	ENSMUSG00000052566.9	ENSMUST00000209764.2	2516	23	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_11	90.9203629375412	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTATGAGCGTTTTTGCC	NA	False	NA	12	True	AATAAA	-8	NA	85717231	85729972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85717382_85717847_85717934_85718005_85718079_85719812_85719864_85719952_85720086_85720203_85720272_85720616_85720680_85721089_85721171_85721250_85721412_85721504_85721646_85722364_85722396_85722467_85722567_85723583_85723695_85723792_85723881_85724007_85724078_85724628_85724767_85724832_85724921_85725118_85725154_85727783_85727867_85727949_85728054_85729132_85729244_85729315_85729388_85729493
transcript_91446.known	chr8	-	1944	9	FSM	ENSMUSG00000052819.7	ENSMUST00000209322.2	1944	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.330718913883074	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACGTCTTTAAAGCAGTTG	NA	False	NA	NA	False	NA	NA	NA	85740220	85733830	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_85734614_85735829_85735985_85736129_85736211_85736294_85736448_85737391_85737470_85737757_85737913_85737997_85738232_85739818_85739914_85740010
transcript_91463.known	chr8	-	641	1	FSM	ENSMUSG00000052456.10	ENSMUST00000211221.2	641	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACAGCTGGTTTGTGCCA	8418	False	NA	NA	False	NA	NA	NA	85751892	85751251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_85751300_85751900
transcript_91464.known	chr8	-	1256	7	FSM	ENSMUSG00000052456.10	ENSMUST00000064314.10	1256	7	0	0	0	0	multi-exon	FALSE	canonical	1	664	junction_3	477.58303524681	4846	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTTGTCAGTGGATG	8400	False	NA	-4	True	AATAAA	-14	NA	85751910	85744559	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_85744885_85745150_85745349_85745439_85745548_85746150_85746302_85746388_85746538_85750806_85750955_85751733
transcript_91467.known	chr8	+	902	3	FSM	ENSMUSG00000041203.10	ENSMUST00000047281.10	902	3	0	0	0	0	multi-exon	FALSE	canonical	3	920	junction_1	163	3712	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGCTTGGTTTATCTT	NA	False	NA	21	True	AGTAAA	-21	NA	85753451	85756915	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85753864_85756167_85756246_85756503
transcript_9147.known	chr10	-	660	3	FSM	ENSMUSG00000112261.2	ENSMUST00000219379.2	660	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	4.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGAGTCACTGAGTTCT	1553	False	NA	NA	False	NA	NA	NA	95297086	95281177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_95281620_95296475_95296588_95296980
transcript_91470.known	chr8	+	1907	10	FSM	ENSMUSG00000008167.15	ENSMUST00000095220.4	1907	10	0	0	0	0	multi-exon	TRUE	canonical	3	54	junction_4	11.5864970366477	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGTGTGAGCTTTCTGT	NA	False	NA	22	True	AATAAA	-22	NA	85786683	85793750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85787166_85788574_85788715_85788800_85788930_85791012_85791126_85791209_85791302_85792449_85792599_85792684_85792799_85792901_85792992_85793073_85793140_85793218
transcript_91471.nnic	chr8	+	1873	10	NNC	ENSMUSG00000008167.15	novel	1907	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_6	25.1813177858526	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGTGTGAGCTTTCTGT	NA	False	NA	22	True	AATAAA	-22	NA	85786684	85793750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_85787166_85788574_85788715_85788800_85788930_85791012_85791126_85791209_85791302_85792449_85792599_85792717_85792799_85792901_85792992_85793073_85793140_85793218
transcript_91474.known	chr8	+	1993	9	FSM	ENSMUSG00000008167.15	ENSMUST00000139721.8	1993	9	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	8.18535277187245	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTGAGCTTTCTGTGAC	NA	False	NA	25	True	AATAAA	-25	NA	85786684	85793753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85787166_85788574_85788715_85788800_85788930_85791012_85791302_85792449_85792599_85792684_85792799_85792901_85792992_85793073_85793140_85793218
transcript_91486.known	chr8	+	1333	9	FSM	ENSMUSG00000060038.15	ENSMUST00000078665.13	1333	9	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_2	36.5391485259304	1496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCATCCTTGGTGTCAG	NA	False	NA	23	True	AATAAA	-29	NA	85798385	85801791	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85798683_85799080_85799246_85799923_85800046_85800131_85800229_85800309_85800397_85800840_85800947_85801021_85801126_85801362_85801489_85801562
transcript_91496.known	chr8	+	1166	8	FSM	ENSMUSG00000060038.15	ENSMUST00000152871.8	1166	8	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	92.1485048103089	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTCAGTCTGCATCCTTGG	NA	False	NA	17	True	AATAAA	-23	NA	85798424	85801785	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85798683_85799080_85799246_85800131_85800229_85800309_85800397_85800840_85800947_85801021_85801126_85801362_85801489_85801562
transcript_915.known	chr1	-	2204	5	FSM	ENSMUSG00000025917.10	ENSMUST00000139578.8	2204	5	0	0	0	0	multi-exon	FALSE	canonical	3	713	junction_4	120.517633564554	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	10108163	10101144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_10102650_10103482_10103549_10104232_10104362_10105153_10105389_10107894
transcript_91520.known	chr8	+	659	2	FSM	ENSMUSG00000060038.15	ENSMUST00000129826.2	659	2	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_1	0	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTAGTCTTTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	85798434	85799491	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85798683_85799080
transcript_91522.known	chr8	+	1097	7	FSM	ENSMUSG00000060038.15	ENSMUST00000142422.8	1097	7	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_1	32.4704994315353	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGAGTCAGTCTGCATC	NA	False	NA	12	True	AATAAA	-18	NA	85799686	85801780	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85800046_85800131_85800229_85800309_85800397_85800840_85800947_85801021_85801126_85801362_85801489_85801562
transcript_91523.known	chr8	+	379	2	FSM	ENSMUSG00000060038.15	ENSMUST00000132356.2	379	2	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_1	0	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGAGTCAGTCTGCATC	NA	False	NA	12	True	AATAAA	-18	NA	85801327	85801780	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85801489_85801562
transcript_91524.known	chr8	-	1238	9	FSM	ENSMUSG00000005150.17	ENSMUST00000093357.12	1238	9	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_6	13.3410784796432	1220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTTAGTCTTCATTCTT	NA	False	NA	-2	True	AATAAA	-35	NA	85807375	85801663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_85801973_85802451_85802567_85802652_85802762_85802845_85802914_85806209_85806337_85806417_85806467_85806748_85806855_85806941_85807063_85807141
transcript_91525.known	chr8	-	1406	8	FSM	ENSMUSG00000005150.17	ENSMUST00000131909.8	1406	8	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_4	7.90763000177031	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTTAGTCTTCATTCTT	NA	False	NA	-2	True	AATAAA	-35	NA	85807261	85801663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_85801973_85802451_85802567_85802652_85802762_85802845_85802914_85806209_85806337_85806417_85806855_85806941_85807063_85807141
transcript_91526.known	chr8	-	1561	7	FSM	ENSMUSG00000005150.17	ENSMUST00000136696.8	1561	7	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_3	8.39477350630869	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTTAGTCTTCATTCTT	NA	False	NA	-2	True	AATAAA	-35	NA	85807332	85801663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_85801973_85802451_85802567_85802652_85802914_85806209_85806337_85806417_85806855_85806941_85807063_85807141
transcript_91527.known	chr8	+	922	4	FSM	ENSMUSG00000059355.14	ENSMUST00000079764.14	922	4	0	0	0	0	multi-exon	FALSE	canonical	3	586	junction_1	13.7679176187089	5256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGCTTCTCTTTTGTTC	NA	False	NA	36	True	TATAAA	-25	NA	85807368	85808968	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85807693_85807801_85807908_85808405_85808504_85808574
transcript_91528.known	chr8	+	630	4	FSM	ENSMUSG00000059355.14	ENSMUST00000140621.2	630	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	280.064675070281	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGCACTGTTGCTTCTCT	NA	False	NA	29	True	TATAAA	-18	NA	85807616	85808961	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85807693_85807801_85807908_85808405_85808504_85808611
transcript_91529.known	chr8	+	798	3	FSM	ENSMUSG00000059355.14	ENSMUST00000148592.2	798	3	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_2	13.5	468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGCTTCTCTTTTGTTC	NA	False	NA	36	True	TATAAA	-25	NA	85807601	85808968	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85807908_85808405_85808504_85808574
transcript_91531.known	chr8	+	3822	24	FSM	ENSMUSG00000005142.11	ENSMUST00000034121.11	3822	24	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_7	31.1019422681999	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAACACACCTAAAAGG	NA	False	NA	NA	False	NA	NA	NA	85809943	85824911	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_85810118_85811029_85811133_85811269_85811444_85811983_85812178_85813439_85813573_85813800_85813947_85815182_85815300_85817546_85817630_85817712_85817834_85817901_85817981_85818139_85818250_85818466_85818575_85818693_85818811_85819460_85819650_85820547_85820646_85820734_85820853_85821748_85821868_85821954_85822057_85822167_85822256_85822359_85822441_85822899_85823128_85823334_85823491_85823580_85823684_85824030
transcript_91537.nic	chr8	+	1243	4	ISM	ENSMUSG00000005142.11	ENSMUST00000034121.11	3822	24	-46	12182	-1	11	5prime_fragment	FALSE	canonical	3	217	junction_2	6.48074069840786	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATCTAGGGCTGGAGC	NA	False	NA	NA	False	NA	NA	NA	85809897	85812729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_85810118_85811029_85811133_85811269_85811444_85811983
transcript_91544.known	chr8	-	1587	4	FSM	ENSMUSG00000074194.5	ENSMUST00000098550.4	1587	4	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	2.16024689946929	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAATGTGCTTAGTGTAC	NA	False	NA	NA	False	NA	NA	NA	85846266	85836275	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_85837672_85838838_85838900_85840135_85840263_85846263
transcript_91546.known	chr8	-	3474	17	FSM	ENSMUSG00000031696.10	ENSMUST00000034131.10	3474	17	0	0	0	0	multi-exon	FALSE	canonical	3	1260	junction_3	108.704875695619	712	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGATTATCTTTGTTTT	NA	False	NA	-8	True	AATAAA	-15	NA	86026431	85987020	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_85987939_85988623_85988768_85989939_85990180_85990772_85990953_85997321_85997445_86000100_86000257_86001448_86001657_86005332_86005482_86005588_86005686_86007864_86007975_86008469_86008554_86010621_86010836_86012969_86013153_86014324_86014449_86016334_86016432_86021487_86021587_86026083
transcript_91556.known	chr8	+	1287	7	FSM	ENSMUSG00000031697.13	ENSMUST00000034132.13	1287	7	0	0	0	0	multi-exon	FALSE	canonical	3	862	junction_2	81.7626986399598	3670	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAATGTGTATGAGTAT	NA	False	NA	9	True	AATAAA	-17	NA	86026419	86034700	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_86026622_86027737_86027868_86029424_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034214
transcript_91563.known	chr8	+	1466	6	FSM	ENSMUSG00000031697.13	ENSMUST00000170141.3	1466	6	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	361.716463545689	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGAGTTGTGATTGTCAG	NA	False	NA	NA	False	AATAAA	-17	NA	86026317	86034907	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_86026622_86029424_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034214
transcript_91566.known	chr8	+	1041	6	FSM	ENSMUSG00000031697.13	ENSMUST00000210146.2	1041	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	398.413353189875	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAATGTGTATGAGTA	NA	False	NA	8	True	AATAAA	-16	NA	86026551	86034699	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_86026622_86027737_86027868_86029424_86029589_86029990_86030081_86032845_86032948_86034214
transcript_91567.nnic	chr8	+	1360	6	NIC	ENSMUSG00000031697.13	novel	1287	7	NA	NA	-79	0	combination_of_known_splicesites	FALSE	canonical	3	109	junction_2	378.03089820807	565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAATGTGTATGAGTA	NA	False	NA	8	True	AATAAA	-16	NA	86026181	86034699	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_86026622_86027737_86027868_86029990_86030081_86031837_86031951_86032845_86032948_86034214
transcript_91580.known	chr8	-	419	3	FSM	ENSMUSG00000036934.10	ENSMUST00000209355.2	419	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	124.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGCAGAAATAAATAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	86159450	86136446	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_86136520_86138741_86138925_86159287
transcript_91583.known	chr8	-	1587	4	FSM	ENSMUSG00000036934.10	ENSMUST00000047749.7	1587	4	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_1	19.3045763140937	1017	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGGCATACCAGTGTGG	NA	False	NA	94	True	ATTAAA	-21	NA	86159462	86135387	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_86136520_86138741_86138925_86153488_86153586_86159287
transcript_91584.known	chr8	+	3639	12	FSM	ENSMUSG00000031700.12	ENSMUST00000034136.12	3639	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	271.645643020279	469	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGCAGCTTGGTCAATAA	NA	False	NA	13	True	AATAAA	-19	NA	86219204	86254189	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_86219319_86219533_86219799_86229893_86229984_86232207_86232317_86235807_86235939_86238741_86238986_86242786_86242867_86244605_86244743_86246076_86246252_86247967_86248124_86249884_86249998_86252164
transcript_91591.known	chr8	-	2919	9	FSM	ENSMUSG00000031701.7	ENSMUST00000034138.7	2919	9	0	0	0	0	multi-exon	FALSE	canonical	3	694	junction_1	52.4486355875918	1888	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTCAGCATTCTTCAGT	NA	False	NA	NA	False	AATAAA	-15	NA	86281973	86264261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_86266037_86266678_86266807_86266936_86267082_86273141_86273339_86275192_86275327_86275510_86275592_86279815_86280040_86280545_86280606_86281798
transcript_91595.known	chr8	-	3306	18	FSM	ENSMUSG00000031703.9	ENSMUST00000034140.9	3306	18	0	0	0	0	multi-exon	FALSE	canonical	1	110	junction_3	53.6212528231601	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAAACGCTGTGGCAAG	NA	False	NA	-21	True	AATAAA	-13	NA	86567550	86444206	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_86445557_86449259_86449378_86452142_86452226_86452794_86452920_86459001_86459081_86462753_86462798_86464745_86464855_86466856_86467008_86490863_86491037_86493586_86493682_86502768_86502851_86507144_86507207_86537173_86537269_86557811_86557887_86561649_86561708_86562974_86563121_86565556_86565630_86567162
transcript_916.known	chr1	+	4355	30	FSM	ENSMUSG00000056763.17	ENSMUST00000071087.12	4355	30	0	0	0	0	multi-exon	FALSE	canonical	2	35	junction_1	28.6386316840114	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCAGTGTCGGTTTCTTT	NA	False	NA	4	True	AATAAA	-17	NA	10108441	10206993	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_10108570_10115300_10115410_10117648_10117752_10128944_10129049_10134557_10134639_10135547_10135647_10136650_10137046_10145084_10145172_10147396_10147468_10152477_10152572_10153725_10153784_10155971_10156178_10158275_10158410_10159106_10159186_10160412_10160543_10166090_10166239_10174436_10174590_10178593_10178707_10182617_10182768_10183100_10183248_10183827_10183933_10186242_10186310_10186838_10186957_10196564_10196705_10197647_10197789_10200210_10200258_10202678_10202743_10203388_10203499_10204316_10204456_10206158
transcript_91603.known	chr8	+	1013	8	FSM	ENSMUSG00000036879.16	ENSMUST00000159882.8	1013	8	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	24.1356709507919	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTCTGAAAGGAGCAAGG	NA	False	NA	NA	False	AATAAA	-14	NA	86567636	86649045	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_86567733_86569632_86569742_86602262_86602353_86604738_86604878_86606339_86606440_86623058_86623167_86628505_86628587_86648755
transcript_91605.known	chr8	+	2859	15	FSM	ENSMUSG00000047866.21	ENSMUST00000034141.18	2859	15	0	0	0	0	multi-exon	TRUE	canonical	3	174	junction_5	34.038693468775	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAATTCTGGTCTCCAGTG	NA	False	NA	NA	False	AATAAA	-12	NA	87350671	87443259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_87351045_87358013_87358249_87360496_87360629_87361424_87361548_87363106_87363271_87364530_87364626_87368169_87368429_87378803_87378946_87392318_87392470_87394340_87394468_87399563_87399698_87435560_87435704_87439939_87440148_87440530_87440722_87442877
transcript_91608.known	chr8	+	2371	13	FSM	ENSMUSG00000047866.21	ENSMUST00000122188.10	2371	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	73.1522385166715	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAATTCTGGTCTCCAGTG	NA	False	NA	NA	False	AATAAA	-12	NA	87350733	87443259	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_87351045_87358013_87358249_87360496_87360560_87364600_87364626_87368169_87368429_87378803_87378946_87392318_87392470_87394340_87394468_87399563_87399698_87435560_87435704_87439939_87440148_87440530_87440722_87442877
transcript_91610.nnic	chr8	+	1040	5	NNC	ENSMUSG00000047866.21	novel	2859	15	NA	NA	33631	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	121.711492883786	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATTCTGGTCTCCAGTGG	NA	False	NA	NA	False	AATAAA	-13	NA	87411827	87443260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_87411943_87435560_87435704_87439939_87440148_87440530_87440722_87442877
transcript_91611.known	chr8	-	6469	7	FSM	ENSMUSG00000031652.12	ENSMUST00000034074.8	6469	7	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_2	32.4790530786981	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTGGAGGGTGGTGCTT	NA	False	NA	-8	True	NA	NA	NA	87611886	87567766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_87571670_87573442_87573551_87575074_87575183_87578252_87578350_87579786_87579918_87587053_87588739_87611449
transcript_91614.known	chr8	+	538	1	FSM	ENSMUSG00000066362.6	ENSMUST00000183478.2	538	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	275052	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATCTCAGACACTAAAG	NA	False	NA	37	True	AATAAA	-26	NA	87774316	87774854	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_87774300_87774900
transcript_91632.nnic	chr8	+	632	5	NIC	ENSMUSG00000097248.10	novel	682	4	NA	NA	-45	0	combination_of_known_splicesites	FALSE	canonical	3	30	junction_1	79.1023861839831	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTGTGTCCATTCCTCCT	153	False	NA	7	True	AATAAA	-15	NA	88199394	88252182	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_88199589_88240436_88240525_88248363_88248442_88250923_88251056_88252042
transcript_91638.known	chr8	+	432	5	FSM	ENSMUSG00000097248.10	ENSMUST00000182650.8	432	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	85.5964368417284	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTGCCCACAGTGAGATG	209	False	NA	NA	False	NA	NA	NA	88199743	88251636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_88199859_88240436_88240525_88248363_88248442_88250923_88251056_88251617
transcript_91640.nic	chr8	+	566	5	NIC	ENSMUSG00000097248.10	novel	447	4	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	1	4	junction_1	86.1434124004848	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTGTGTCCATTCCTCCT	196	False	NA	7	True	AATAAA	-15	NA	88199730	88252182	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_88199859_88240436_88240525_88248363_88248442_88250923_88251056_88252042
transcript_91644.known	chr8	+	682	4	FSM	ENSMUSG00000097248.10	ENSMUST00000181159.8	682	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	80.2509951478623	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTGTGTCCATTCCTCCT	198	False	NA	7	True	AATAAA	-15	NA	88199439	88252182	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_88199589_88248363_88248442_88250923_88251056_88251859
transcript_91645.known	chr8	+	498	4	FSM	ENSMUSG00000097248.10	ENSMUST00000182174.8	498	4	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_1	31.0590834807897	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGAGTGTGTCCATTCCTCC	198	False	NA	6	True	AATAAA	-14	NA	88199439	88252181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_88199589_88248363_88248442_88250923_88251056_88252042
transcript_91647.known	chr8	+	447	4	FSM	ENSMUSG00000097248.10	ENSMUST00000182758.2	447	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	69.6866000191014	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTGTGTCCATTCCTCCT	227	False	NA	7	True	AATAAA	-15	NA	88199761	88252182	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_88199859_88248363_88248442_88250923_88251056_88252042
transcript_91649.known	chr8	-	2800	3	FSM	ENSMUSG00000031654.17	ENSMUST00000034076.16	2800	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCCTTTCCTTTCCTTT	100	False	NA	NA	False	AATAAA	-17	NA	88199237	88195032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_88197080_88198319_88198440_88198604
transcript_91654.known	chr8	+	1303	2	FSM	ENSMUSG00000097248.10	ENSMUST00000181898.2	1303	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATTTTGTGCAGGATGT	250	False	NA	NA	False	AATAAA	-16	NA	88199784	88230600	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_88200077_88229589
transcript_91657.known	chr8	+	1731	6	FSM	ENSMUSG00000036810.17	ENSMUST00000095214.10	1731	6	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_2	26.3256528883901	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTAGTGGTTAGAGATT	NA	False	NA	9	True	AATAAA	-11	NA	88845396	88861734	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_88845498_88846407_88846480_88851709_88851784_88856322_88856433_88856974_88857030_88860415
transcript_91658.known	chr8	+	1643	5	FSM	ENSMUSG00000036810.17	ENSMUST00000127490.8	1643	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	72.261244799685	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGTGGTTAGAGATTTTCT	NA	False	NA	13	True	AATAAA	-15	NA	88845414	88861738	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_88845498_88846407_88846480_88856322_88856433_88856974_88857030_88860415
transcript_91659.known	chr8	+	3251	15	FSM	ENSMUSG00000031657.17	ENSMUST00000034079.14	3251	15	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_7	19.6926641267291	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTGTGTCATACAGATT	NA	False	NA	NA	False	AATAAA	-16	NA	88864482	88898655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_88864786_88864902_88865076_88866519_88866608_88868299_88868410_88871156_88871267_88874174_88874316_88876719_88876998_88883089_88883181_88883297_88883456_88883680_88883764_88884756_88884894_88888505_88888595_88891515_88891660_88893623_88893801_88897486
transcript_91665.known	chr8	-	3625	17	FSM	ENSMUSG00000031660.14	ENSMUST00000034085.8	3625	17	0	0	0	0	multi-exon	TRUE	canonical	3	463	junction_12	36.2439650148821	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	89088822	89057686	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_89059172_89059508_89059653_89060365_89060510_89060732_89060845_89063708_89063766_89066036_89066149_89069362_89069499_89070209_89070318_89071776_89071853_89072457_89072582_89073501_89073687_89078427_89078539_89081256_89081402_89084164_89084223_89084527_89084658_89088129_89088339_89088533
transcript_91670.nic	chr8	-	252	2	ISM	ENSMUSG00000031660.14	ENSMUST00000135471.2	511	4	2	4034	2	-4034	5prime_fragment	FALSE	canonical	3	543	junction_1	0	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGGAAGAAAGGCGAGAAGC	NA	False	NA	6	True	NA	NA	NA	89088640	89088193	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_89088339_89088533
transcript_91671.known	chr8	+	4476	17	FSM	ENSMUSG00000036712.16	ENSMUST00000209559.2	4476	17	0	0	0	0	multi-exon	TRUE	canonical	3	35	junction_1	10.7172466146861	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTCTATAAATATTGCTGT	NA	False	NA	8	True	TATAAA	-17	NA	89423702	89475083	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_89423728_89431853_89432508_89433716_89434020_89436518_89436625_89445925_89446025_89449726_89449841_89456086_89456467_89457283_89457450_89458302_89458445_89459613_89459737_89461510_89461603_89462458_89462526_89467918_89468052_89468913_89469023_89471455_89471575_89471836_89472054_89473456
transcript_91672.nnic	chr8	+	468	4	Antisense	novelGene_ENSMUSG00000031665.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_2	4.78423336480244	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGCTGTAATGC	NA	False	NA	NA	False	NA	NA	NA	89768310	89795959	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr8_+_89768425_89784011_89784080_89794818_89794920_89795774
transcript_91676.nnic	chr8	+	754	3	Antisense	novelGene_ENSMUSG00000031665.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	16	junction_1	4	32	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGCTGTA	NA	False	NA	NA	False	NA	NA	NA	89767919	89795955	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr8_+_89768425_89784011_89784080_89795774
transcript_91679.nnic	chr8	+	653	3	Antisense	novelGene_ENSMUSG00000031665.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	10	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGCTGTA	NA	False	NA	NA	False	NA	NA	NA	89769575	89795955	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr8_+_89769980_89784011_89784080_89795774
transcript_9168.known	chr10	-	661	6	FSM	ENSMUSG00000062981.6	ENSMUST00000218893.2	661	6	0	0	0	0	multi-exon	FALSE	canonical	3	2875	junction_5	503.887924046608	14094	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATCCAAGTGTGTATTTCA	NA	False	NA	-11	True	AATAAA	-14	NA	95337802	95316669	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_95316840_95326107_95326275_95329492_95329578_95332685_95332750_95336244_95336385_95337767
transcript_91681.nnic	chr8	+	922	2	Antisense	novelGene_ENSMUSG00000031665.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	16	junction_1	0	50	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCTTCATAAATAATCCT	NA	False	NA	NA	False	ATTAAA	-18	NA	89767791	89784300	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr8_+_89768425_89784011
transcript_91683.nnic	chr8	+	693	2	Antisense	novelGene_ENSMUSG00000031665.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	0	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCTTCATAAATAATCCT	NA	False	NA	NA	False	ATTAAA	-18	NA	89769575	89784300	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr8_+_89769980_89784011
transcript_91685.known	chr8	-	5265	4	FSM	ENSMUSG00000031665.8	ENSMUST00000034090.8	5265	4	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_3	110.426446107805	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTCTGTGTTTGTAGAG	NA	False	NA	NA	False	GATAAA	-9	NA	89770790	89753862	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_89755447_89756571_89760027_89768979_89769073_89770657
transcript_91686.known	chr8	-	1425	3	FSM	ENSMUSG00000110212.2	ENSMUST00000211762.2	1425	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAACATTAGCAGTTACAAA	NA	False	NA	NA	False	NA	NA	NA	91489224	91486090	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_91487378_91488284_91488358_91489159
transcript_9169.known	chr10	-	455	5	FSM	ENSMUSG00000062981.6	ENSMUST00000217777.2	455	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	1680.921826707	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGGAAAAAATAAAAATACCC	NA	False	NA	-37	True	NA	NA	NA	95337789	95316695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_95316840_95329492_95329578_95332685_95332750_95336244_95336385_95337767
transcript_91691.nnic	chr8	+	720	2	Antisense	novelGene_ENSMUSG00000089179.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	18	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGCTTGGTCATGGTGTC	NA	False	NA	NA	False	NA	NA	NA	91787367	91788708	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr8_+_91787736_91788356
transcript_91696.known	chr8	-	1171	10	FSM	ENSMUSG00000031667.17	ENSMUST00000109609.9	1171	10	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_9	96.0081015100057	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTGGCTATCAGTGTTG	NA	False	NA	-9	True	AGTAAA	-12	NA	91860651	91851096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857777_91860527
transcript_91697.known	chr8	-	2079	10	FSM	ENSMUSG00000031667.17	ENSMUST00000125257.3	2079	10	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_9	63.7020456287233	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAGCTGTTAAATAATTTT	NA	False	NA	-73	True	AATAAA	-18	NA	91860655	91850196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857781_91860527
transcript_917.known	chr1	+	312	2	FSM	ENSMUSG00000056763.17	ENSMUST00000190625.2	312	2	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATTTTATTCATTGTGT	NA	False	NA	NA	False	AATAAA	-11	NA	10174452	10178768	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_10174590_10178593
transcript_9170.known	chr10	-	677	6	FSM	ENSMUSG00000062981.6	ENSMUST00000219019.2	677	6	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_3	1931.1881316951	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGTGTGTATTTCATTA	NA	False	NA	-8	True	AATAAA	-17	NA	95336385	95316666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_95316840_95326107_95326275_95326396_95326444_95329492_95329578_95332685_95332750_95336244
transcript_91716.known	chr8	+	932	1	FSM	ENSMUSG00000031666.16	ENSMUST00000210533.2	932	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAAAAAAGAAACATGGC	NA	False	NA	NA	False	TTTAAA	-44	NA	91796697	91797629	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_91796700_91797600
transcript_91717.known	chr8	-	2200	11	FSM	ENSMUSG00000031667.17	ENSMUST00000120213.9	2200	11	0	0	0	0	multi-exon	TRUE	canonical	3	60	junction_9	146.200581394193	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATTTTTTTAACTTCCAG	NA	False	NA	-3	True	AATAAA	-17	NA	91860625	91850126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857781_91858550_91858632_91860527
transcript_91718.nnic	chr8	-	1284	7	NNC	ENSMUSG00000033282.15	novel	404	3	NA	NA	-14	12277	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	8.51306185941475	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTTCTGCTTATTAAAAA	NA	False	NA	NA	False	ATTAAA	-23	NA	92039904	92022339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_92022767_92025856_92026001_92027405_92027509_92031346_92031646_92034669_92034815_92036965_92037058_92039830
transcript_91721.nic	chr8	-	498	3	ISM	ENSMUSG00000033282.15	ENSMUST00000139113.8	5046	26	-54	88899	-14	134	5prime_fragment	FALSE	canonical	3	21	junction_2	3	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGTCTAAAGTTGCCATT	NA	False	NA	NA	False	AATAAA	-19	NA	92039904	92034482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_92034815_92036965_92037058_92039830
transcript_91722.nic	chr8	-	317	3	ISM	ENSMUSG00000033282.15	ENSMUST00000139113.8	5046	26	-54	89080	-14	0	5prime_fragment	FALSE	canonical	3	21	junction_2	3	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAAGCTTTTAGCTTTT	NA	False	NA	NA	False	ATTAAA	-9	NA	92039904	92034663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_92034815_92036965_92037058_92039830
transcript_91723.known	chr8	-	278	2	FSM	ENSMUSG00000033282.15	ENSMUST00000209564.2	278	2	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAGTTTCTTATAAACTTA	NA	False	NA	NA	False	GATAAA	-43	NA	92037045	92034616	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_92034815_92036965
transcript_91724.known	chr8	+	3564	9	FSM	ENSMUSG00000055932.16	ENSMUST00000069718.15	3564	9	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_7	44.2492937796752	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCGTCCGTGCTTTTCTCC	NA	False	NA	16	True	AATAAA	-24	NA	92040152	92395067	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_92040249_92128434_92128513_92135850_92136470_92168290_92168435_92194944_92195025_92200936_92201081_92211786_92211907_92249399_92249525_92392909
transcript_91726.known	chr8	+	3751	7	FSM	ENSMUSG00000055932.16	ENSMUST00000136802.8	3751	7	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_6	36.3994047570378	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGAAAAGAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	92040195	92214419	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_92040249_92128434_92128513_92135850_92136470_92168290_92168435_92194944_92195025_92200936_92201081_92211786
transcript_91730.known	chr8	+	3887	4	FSM	ENSMUSG00000055932.16	ENSMUST00000125471.8	3887	4	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_3	30.4667396060396	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAAAAGGAAACAGTTTAG	NA	False	NA	NA	False	NA	NA	NA	92040162	92171394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_92040249_92128434_92128513_92135850_92136470_92168290
transcript_91732.nic	chr8	-	1115	6	NIC	ENSMUSG00000031736.12	novel	1238	7	NA	NA	-3	0	intron_retention	FALSE	canonical	0	0	junction_4	5.31413210223457	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTTGTTTGTGTAATGG	NA	False	NA	NA	False	AATAAA	-21	NA	93082500	93052660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_93053091_93071480_93071668_93072977_93073092_93073411_93073547_93077318_93077383_93082315
transcript_91735.known	chr8	-	1229	1	FSM	ENSMUSG00000078967.6	ENSMUST00000181181.2	1229	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1417	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATAAAATAAAATA	NA	False	NA	NA	False	AATAAA	-14	NA	93443603	93442374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_93442400_93443600
transcript_91736.known	chr8	+	3078	13	FSM	ENSMUSG00000031740.9	ENSMUST00000034187.9	3078	13	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_9	5.63964143856288	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTGGCTCTGTTTTAGC	NA	False	NA	4	True	AATAAA	-19	NA	93553918	93580048	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_93554406_93557248_93557476_93558312_93558462_93559391_93559521_93559696_93559871_93562596_93562771_93563533_93563708_93565880_93566037_93567017_93567160_93570447_93570585_93572708_93572869_93576753_93576864_93579189
transcript_91737.known	chr8	+	2811	14	FSM	ENSMUSG00000033192.6	ENSMUST00000046290.3	2811	14	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_10	2.47591952914324	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATTGGTTCTGTTGGTAC	NA	False	NA	NA	False	AATAAA	-30	NA	93581966	93645907	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_93582254_93591528_93591669_93596275_93596494_93597765_93597879_93599675_93599737_93600860_93600920_93602182_93602218_93606027_93606083_93613193_93613277_93615900_93616027_93617300_93617455_93635814_93635914_93640870_93641007_93644662
transcript_91742.nnic	chr8	-	956	4	NNC	ENSMUSG00000110714.2	novel	1003	7	NA	NA	-387	-2867	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.471404520791032	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAGCTTGCTTTTTGAAC	NA	False	NA	NA	False	GATAAA	-25	NA	93881131	93870825	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_93871168_93872094_93872376_93880491_93880697_93881003
transcript_91743.nnic	chr8	-	685	3	NNC	ENSMUSG00000110714.2	novel	1003	7	NA	NA	-387	-4065	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.5	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTTGTTTTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	93881131	93872023	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_93872376_93880491_93880697_93881003
transcript_91744.known	chr8	-	1110	4	FSM	ENSMUSG00000110670.2	ENSMUST00000212930.2	1110	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGGCGGGCCACTCTGCAG	0	True	NA	NA	False	NA	NA	NA	94153971	94149768	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_94150064_94150168_94150242_94152733_94152830_94153325
transcript_91748.nnic	chr8	-	684	2	NNC	ENSMUSG00000058019.14	novel	987	4	NA	NA	6840	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	15	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCAGGGAACACAATTTAAT	NA	False	NA	NA	False	AATAAA	-19	NA	94226556	94225690	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_94226238_94226419
transcript_9175.known	chr10	+	3867	4	FSM	ENSMUSG00000074781.6	ENSMUST00000099329.5	3867	4	0	0	0	0	multi-exon	FALSE	canonical	3	1883	junction_3	164.877732476726	2950	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGATGATTTGACTGGTC	NA	False	NA	13	True	AATAAA	-17	NA	95351006	95381519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_95351100_95377066_95377314_95377499_95377641_95378133
transcript_91758.known	chr8	-	1184	7	FSM	ENSMUSG00000031754.11	ENSMUST00000212981.2	1184	7	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_6	876.397677363929	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTTTTTTTAAGTTTC	NA	False	NA	NA	False	ATTAAA	-19	NA	94763634	94746075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_94746333_94749402_94749518_94751169_94751246_94755462_94755553_94757771_94757836_94758929_94759131_94763253
transcript_9176.known	chr10	+	1103	4	FSM	ENSMUSG00000074781.6	ENSMUST00000220127.2	1103	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	985.351826619417	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGCCTTTGTACAGTTT	NA	False	NA	NA	False	AGTAAA	-18	NA	95351046	95378868	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_95351100_95377066_95377241_95377499_95377641_95378133
transcript_91760.known	chr8	-	5010	7	FSM	ENSMUSG00000031754.11	ENSMUST00000034204.11	5010	7	0	0	0	0	multi-exon	FALSE	canonical	3	2190	junction_4	118.898649651242	3962	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTAATTGTTTGGGATAT	NA	False	NA	NA	False	AATAAA	-17	NA	94763659	94742123	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_94746333_94749402_94749518_94751169_94751246_94755462_94755553_94757771_94757836_94758929_94759131_94763404
transcript_91761.known	chr8	+	5310	13	FSM	ENSMUSG00000033009.16	ENSMUST00000109556.9	5310	13	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_2	14.2971928091574	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTATGGTGGTAATTTATA	NA	False	NA	7	True	AATAAA	-17	NA	94763825	94794549	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_94764071_94765592_94765739_94773899_94773947_94778702_94778804_94781231_94781349_94781880_94781973_94782163_94782293_94782671_94782786_94784343_94784424_94784677_94784992_94789594_94789718_94790096_94790156_94790806
transcript_91764.nnic	chr8	+	2405	3	NNC	ENSMUSG00000033009.16	novel	718	7	NA	NA	-11	4326	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	80	41	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTGGTCATGGTGTC	NA	False	NA	NA	False	NA	NA	NA	94763854	94770406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_94764071_94765592_94765739_94768363
transcript_91765.known	chr8	+	671	2	FSM	ENSMUSG00000033009.16	ENSMUST00000141636.2	671	2	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGTTATCAGGGAGATT	NA	False	NA	NA	False	NA	NA	NA	94763887	94766080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_94764071_94765592
transcript_91768.known	chr8	-	3064	17	FSM	ENSMUSG00000031755.7	ENSMUST00000034206.6	3064	17	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_15	7.54569413639329	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTTGTTGTTTATAAATT	NA	False	NA	-3	True	AATAAA	-15	NA	94825556	94794581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_94795011_94796589_94796739_94800919_94801033_94801750_94801889_94803579_94803712_94806110_94806241_94807395_94807568_94807652_94807798_94808625_94808766_94808983_94809120_94813283_94813371_94813458_94813564_94814004_94814083_94815730_94815794_94816389_94816516_94819022_94819251_94824863
transcript_9177.known	chr10	+	699	2	FSM	ENSMUSG00000074781.6	ENSMUST00000219381.2	699	2	0	0	0	0	multi-exon	FALSE	canonical	3	2257	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTAGGTCCCTTACCATTT	NA	False	NA	NA	False	NA	NA	NA	95351018	95377684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_95351100_95377066
transcript_91771.known	chr8	-	491	2	FSM	ENSMUSG00000031755.7	ENSMUST00000170208.2	491	2	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	0	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGGCTGAAAGCCTCCTTC	5630	False	NA	NA	False	NA	NA	NA	94796841	94794771	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_94795011_94796589
transcript_91772.known	chr8	+	398	3	FSM	ENSMUSG00000031757.8	ENSMUST00000034207.8	398	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGTGGCTCAGAGTAT	6281	False	NA	NA	False	AATAAA	-16	NA	94863824	94865659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_94863901_94864858_94864925_94865403
transcript_91773.known	chr8	+	536	3	FSM	ENSMUSG00000031760.10	ENSMUST00000034211.10	536	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	1	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCAAGACTGGTCTCTTT	NA	False	NA	7	True	AATAAA	-17	NA	94879234	94880774	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_94879459_94879652_94879719_94880528
transcript_91781.known	chr8	+	388	3	FSM	ENSMUSG00000031762.8	ENSMUST00000212806.2	388	3	0	0	0	0	multi-exon	TRUE	canonical	3	461	junction_1	6516.5	13909	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGCTTGTCTCTGTGCAT	NA	False	NA	33	True	AATAAA	-19	NA	94899487	94900192	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_94899581_94899754_94899821_94899963
transcript_91784.known	chr8	+	511	3	FSM	ENSMUSG00000031762.8	ENSMUST00000034214.8	511	3	0	0	0	0	multi-exon	FALSE	canonical	3	13494	junction_2	132	141782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTCTCTGTGCATTGGT	NA	False	NA	37	True	AATAAA	-23	NA	94899291	94900196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_94899504_94899754_94899821_94899963
transcript_918.known	chr1	+	2535	8	FSM	ENSMUSG00000056763.17	ENSMUST00000122156.8	2535	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	53.5148272415587	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATATGTTTGGCTGTTCCT	NA	False	NA	NA	False	AATATA	-16	NA	10109997	10138558	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_10110105_10115300_10115410_10117648_10117752_10128944_10129049_10130048_10130073_10134557_10134639_10135547_10135647_10136650
transcript_9180.known	chr10	+	670	3	FSM	ENSMUSG00000112188.2	ENSMUST00000219583.2	670	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	1	227	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGTAAGTAATCTAGG	3220	False	NA	NA	False	NA	NA	NA	95567088	95575215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_95567365_95570676_95570791_95574935
transcript_91804.known	chr8	+	1085	1	FSM	ENSMUSG00000031765.9	ENSMUST00000211807.2	1085	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCTGGTTTTCTTGGTGT	NA	False	NA	27	True	AATAAA	-16	NA	94905868	94906953	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_94905900_94907000
transcript_91805.known	chr8	+	549	3	FSM	ENSMUSG00000031765.9	ENSMUST00000034215.8	549	3	0	0	0	0	multi-exon	FALSE	canonical	3	14682	junction_2	74.5	166122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGTTTTCTTGGTGTGG	NA	False	NA	29	True	AATAAA	-18	NA	94905709	94906955	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_94905967_94906450_94906517_94906729
transcript_91806.known	chr8	+	633	2	FSM	ENSMUSG00000031765.9	ENSMUST00000212291.2	633	2	0	0	0	0	multi-exon	FALSE	canonical	3	14831	junction_1	0	2701	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGTTTTCTTGGTGTGG	NA	False	NA	29	True	AATAAA	-18	NA	94905838	94906955	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_94905967_94906450
transcript_91807.known	chr8	+	301	2	FSM	ENSMUSG00000110524.2	ENSMUST00000212456.2	301	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTCATTCTGATCTGGTT	NA	False	NA	-3	True	ATTAAA	-7	NA	94909916	94911597	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_94910038_94911417
transcript_91811.known	chr8	+	2928	23	FSM	ENSMUSG00000032939.15	ENSMUST00000212824.2	2928	23	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	328.081966678305	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAGCAAGGAATCAAAGCC	NA	False	NA	NA	False	ATTAAA	-15	NA	94941228	95041694	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_94941260_94947187_94947240_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027387_95027521_95028695_95028854_95030227_95030394_95030787_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
transcript_91814.known	chr8	+	2707	22	FSM	ENSMUSG00000032939.15	ENSMUST00000079961.14	2707	22	0	0	0	0	multi-exon	FALSE	canonical	3	950	junction_1	70.7360075664432	522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCTTTTTCCTTTTTTTT	NA	False	NA	26	True	AATAAA	-27	NA	94941191	95041488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_94941260_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027387_95027521_95028695_95028854_95030227_95030394_95030787_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
transcript_91834.nnic	chr8	+	559	4	NNC	ENSMUSG00000032939.15	novel	2707	22	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	528.949482990158	107	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCTTTTTCCTTTTTTTT	NA	False	NA	26	True	AATAAA	-27	NA	94941180	95041488	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_94941260_94954290_94954423_95038217_95038290_95041212
transcript_91836.known	chr8	+	642	1	FSM	ENSMUSG00000110679.2	ENSMUST00000212707.2	642	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	123	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGGCTTCAATAGTTCTC	NA	False	NA	NA	False	AATATA	-45	NA	94949620	94950262	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_94949600_94950300
transcript_91838.known	chr8	+	2910	17	FSM	ENSMUSG00000031766.5	ENSMUST00000212041.2	2910	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.242061459137964	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAATGTTTGAGGTC	727	False	NA	NA	False	NA	NA	NA	95055837	95073760	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_95056142_95057004_95057152_95058278_95058355_95059854_95059951_95060160_95060301_95060648_95060760_95061600_95061713_95061908_95062040_95066306_95066392_95067120_95067276_95067397_95067506_95067842_95067967_95069653_95069756_95070641_95070798_95071421_95071522_95072402_95072515_95072909
transcript_91842.known	chr8	+	1873	8	FSM	ENSMUSG00000031770.17	ENSMUST00000034220.8	1873	8	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_2	160.784175279808	466	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGAGACTCCCATTGTCC	NA	False	NA	28	True	AATAAA	-21	NA	95113122	95121986	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_95113367_95115983_95116062_95116151_95116224_95117345_95117477_95118359_95118483_95118801_95119153_95120423_95120530_95121218
transcript_91843.known	chr8	+	4552	31	FSM	ENSMUSG00000074151.14	ENSMUST00000182409.9	4552	31	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.47723465374402	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTCAGTGAGTAGAGTGAA	NA	False	NA	NA	False	AATAAA	-16	NA	95196637	95233569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_95196845_95199384_95199683_95200612_95200673_95201259_95201329_95202322_95203986_95206095_95206180_95206318_95206403_95208407_95208492_95208603_95208694_95209194_95209255_95210697_95210761_95211165_95211250_95213259_95213344_95214279_95214370_95215210_95215280_95216140_95216210_95216957_95217051_95217452_95217537_95218108_95218199_95218958_95219004_95219668_95219747_95220897_95220982_95224409_95224494_95227006_95227097_95227245_95227309_95228846_95228931_95231008_95231093_95231733_95231824_95232089_95232156_95233123_95233208_95233294
transcript_91845.nnic	chr8	+	908	3	NNC	ENSMUSG00000034361.11	novel	2342	16	NA	NA	5594	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	3	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCTTTTTCTAAGTAACT	NA	False	NA	NA	False	AATAAA	-17	NA	95294871	95297018	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_95295123_95295218_95295456_95296598
transcript_91846.known	chr8	+	3852	15	FSM	ENSMUSG00000050079.11	ENSMUST00000060389.10	3852	15	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_1	22.9280151245375	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTTCACAGCTCTCATT	8111	False	NA	8	True	AATAAA	-25	NA	95328564	95386903	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_95329059_95349461_95349964_95355683_95355737_95356377_95356491_95358683_95358811_95359733_95359793_95362052_95362120_95363251_95363384_95364890_95365007_95366150_95366295_95373211_95373324_95376380_95376484_95376822_95376976_95380854_95380960_95385331
transcript_91849.known	chr8	+	3397	15	FSM	ENSMUSG00000050079.11	ENSMUST00000211983.2	3397	15	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	38.5556184529014	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTTCACAGCTCTCATT	8240	False	NA	8	True	AATAAA	-25	NA	95328693	95386903	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_95328733_95349461_95349964_95355683_95355737_95356377_95356491_95358683_95358811_95359733_95359793_95362052_95362120_95363251_95363384_95364890_95365007_95366150_95366295_95373211_95373324_95376380_95376484_95376822_95376976_95380854_95380960_95385331
transcript_91861.known	chr8	-	828	9	FSM	ENSMUSG00000031774.9	ENSMUST00000212791.2	828	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	235.276399953331	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGACCTCCCTCCATCCAC	3874	False	NA	NA	False	NA	NA	NA	95328341	95302446	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95323678_95323737_95328262
transcript_91862.nic	chr8	-	1792	9	NIC	ENSMUSG00000031774.9	novel	2873	8	NA	NA	47	717	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	197.424036023986	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTAGAGAAGCAAACTTAC	3772	False	NA	-4	True	AATAAA	-23	NA	95328443	95301567	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328124_95328213_95328309
transcript_91870.known	chr8	-	2873	8	FSM	ENSMUSG00000031774.9	ENSMUST00000034226.8	2873	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	171.915855070118	569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCTTGTTGTCACTGTT	3590	False	NA	NA	False	NA	NA	NA	95328625	95300765	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328124
transcript_91872.nic	chr8	-	1707	8	NIC	ENSMUSG00000031774.9	novel	828	9	NA	NA	-45	717	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	220.053796762037	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTAGAGAAGCAAACTTAC	3816	False	NA	-4	True	AATAAA	-23	NA	95328399	95301567	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328262
transcript_91885.nnic	chr8	-	1724	7	NIC	ENSMUSG00000031774.9	novel	2873	8	NA	NA	-21	717	intron_retention	FALSE	canonical	0	0	junction_3	218.907451271587	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTAGAGAAGCAAACTTAC	3840	False	NA	-4	True	AATAAA	-23	NA	95328375	95301567	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95328124
transcript_91889.known	chr8	+	2063	6	FSM	ENSMUSG00000031776.18	ENSMUST00000034228.16	2063	6	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_5	11.4612390255155	769	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTTGATGTGCATTGTCC	NA	False	NA	12	True	AGTAAA	-25	NA	95393227	95401053	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_95393530_95394224_95394287_95396948_95397056_95397922_95398009_95398689_95398787_95399644
transcript_91893.known	chr8	-	1926	4	FSM	ENSMUSG00000031775.6	ENSMUST00000034227.6	1926	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	2.16024689946929	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGCCTTCTGGGTCTTTT	417	False	NA	NA	False	ATTAAA	-16	NA	95422906	95401521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_95402908_95403853_95403977_95405972_95406147_95422663
transcript_91894.known	chr8	+	3315	3	FSM	ENSMUSG00000031778.14	ENSMUST00000034230.7	3315	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGGAACTTTTCTCTGGG	2179	False	NA	NA	False	AATAAA	-24	NA	95498636	95509055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_95498963_95504655_95504777_95506187
transcript_91899.known	chr8	-	1807	9	FSM	ENSMUSG00000031781.15	ENSMUST00000034233.15	1807	9	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_8	506.411394026635	4069	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTTACTGTGAGTGTG	NA	False	NA	-14	True	ATTAAA	-19	NA	95564893	95549188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_95549836_95550280_95550360_95551843_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95558400_95558554_95559142_95559329_95564581
transcript_919.known	chr1	-	3424	20	FSM	ENSMUSG00000067851.12	ENSMUST00000131556.2	3424	20	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_17	20.9399616632847	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATAATGTAATGTTTTTA	NA	False	NA	NA	False	AATAAA	-16	NA	10302895	10243299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_10243578_10244291_10244421_10250050_10250203_10251094_10251267_10253887_10253973_10254200_10254407_10254610_10254723_10258981_10259184_10259451_10259561_10259663_10259904_10264481_10264717_10269067_10269202_10269953_10270130_10275032_10275135_10279649_10279927_10283268_10283449_10284349_10284497_10286061_10286219_10286753_10286785_10302595
transcript_91902.known	chr8	-	1008	7	FSM	ENSMUSG00000031781.15	ENSMUST00000161792.9	1008	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	604.401080960869	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCTCCTGGTGTTACAGT	NA	False	NA	NA	False	NA	NA	NA	95559287	95549481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_95549836_95550280_95550360_95551843_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95559142
transcript_91904.known	chr8	+	1789	9	FSM	ENSMUSG00000031782.16	ENSMUST00000034234.15	1789	9	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_5	12.7322179921646	315	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTGTTGTTTTGTCTAT	NA	False	NA	9	True	AATAAA	-15	NA	95564948	95581523	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_95565126_95569245_95569397_95571404_95571541_95576752_95576896_95577142_95577228_95578478_95578584_95579742_95579899_95580232_95580287_95580741
transcript_91908.known	chr8	+	1580	9	FSM	ENSMUSG00000031783.11	ENSMUST00000109521.4	1580	9	0	0	0	0	multi-exon	FALSE	canonical	3	1933	junction_5	86.4056566435323	5923	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATTGCTTTAATTGCATT	NA	False	NA	NA	False	AATAAA	-17	NA	95584077	95590870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_95584270_95584374_95584425_95586871_95586941_95587071_95587125_95588338_95588468_95588809_95588862_95589148_95589318_95589437_95589513_95590079
transcript_91909.known	chr8	-	2304	9	FSM	ENSMUSG00000063605.6	ENSMUST00000077955.6	2304	9	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_8	3.67423461417477	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGAGTTCTGAAAGTGTA	NA	False	NA	0	True	AATAAA	-19	NA	95644726	95629496	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_95630020_95631884_95631989_95632559_95632731_95634342_95634553_95634901_95635019_95636371_95636481_95638055_95638283_95639710_95640437_95644609
transcript_91911.known	chr8	-	444	2	FSM	ENSMUSG00000063605.6	ENSMUST00000162020.2	444	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCGACTCGCTGCCACCC	NA	False	NA	NA	False	NA	NA	NA	95644149	95640192	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_95640437_95643949
transcript_91917.known	chr8	+	3616	14	FSM	ENSMUSG00000031785.17	ENSMUST00000179619.9	3616	14	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_6	9.58857801774418	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGTTTGGGTTTGTCT	679	False	NA	46	True	NA	NA	NA	95703734	95740845	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_95704046_95729066_95729142_95729878_95730302_95731841_95731975_95732380_95732529_95732827_95732960_95733449_95733567_95733897_95733944_95734192_95734297_95734998_95735118_95736133_95736403_95737129_95737239_95738172_95738442_95739484
transcript_91919.nnic	chr8	+	1123	4	NNC	ENSMUSG00000031785.17	novel	3011	15	NA	NA	37	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	42.2084772949174	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGAGAGTTGCCCGTCT	718	False	NA	25	True	AATAAA	-38	NA	95703773	95740824	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_95704046_95729066_95729142_95729878_95729986_95740155
transcript_91920.known	chr8	+	3777	20	FSM	ENSMUSG00000031787.9	ENSMUST00000034239.9	3777	20	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	16.4357221924964	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTCCCAAGCCTACCACCA	809	False	NA	NA	False	NA	NA	NA	95807813	95826839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_95807933_95809225_95809522_95813915_95814047_95816587_95816706_95820143_95820245_95820541_95820584_95821107_95821192_95821347_95821464_95821800_95821873_95821979_95822131_95822233_95822425_95822516_95822648_95822983_95823035_95823839_95823917_95824026_95824147_95824242_95824393_95824582_95824660_95824733_95824809_95824946_95825064_95825281
transcript_91927.nnic	chr8	+	680	4	NNC	ENSMUSG00000031787.9	novel	3777	20	NA	NA	45	-6797	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	67.6609192961491	48	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTTAGTGAAAGCTTGGT	854	False	NA	NA	False	AATAAA	-16	NA	95807858	95814666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_95807933_95809225_95809522_95813915_95814047_95814487
transcript_91928.known	chr8	-	536	3	FSM	ENSMUSG00000031789.18	ENSMUST00000184103.9	536	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTAAAGAGTGTGACTTT	NA	False	NA	NA	False	NA	NA	NA	96020702	96017250	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_96017716_96020183_96020221_96020668
transcript_91929.known	chr8	+	968	8	FSM	ENSMUSG00000090206.9	ENSMUST00000161029.9	968	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.59078981795143	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAGGCCCTAGGCTCGTGG	NA	False	NA	NA	False	AATAAA	-16	NA	96038142	96047957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_96038319_96039582_96039808_96046303_96046366_96046613_96046789_96047109_96047172_96047277_96047343_96047533_96047567_96047787
transcript_91933.known	chr8	+	1758	7	FSM	ENSMUSG00000031792.16	ENSMUST00000034245.16	1758	7	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_6	19.6185852927495	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGGTGTCTTATTTTAA	NA	False	NA	12	True	AATAAA	-13	NA	96058911	96074135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_96059094_96059995_96060163_96065261_96065446_96069749_96069804_96070584_96070691_96071916_96072001_96073154
transcript_91936.nnic	chr8	+	1729	7	NNC	ENSMUSG00000031792.16	novel	1758	7	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_3	68.6601938696813	88	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGGTGTCTTATTTTAA	NA	False	NA	12	True	AATAAA	-13	NA	96058919	96074135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_96059094_96059995_96060163_96065261_96065446_96069770_96069804_96070584_96070691_96071916_96072001_96073154
transcript_91939.nic	chr8	+	607	2	ISM	ENSMUSG00000031792.16	ENSMUST00000145060.2	871	5	-45	10493	-4	-4870	5prime_fragment	FALSE	canonical	3	234	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGCTCTGATTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	96058907	96060416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_96059094_96059995
transcript_91940.known	chr8	+	335	3	FSM	ENSMUSG00000031792.16	ENSMUST00000213059.2	335	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTTGACGCGTTGCTGC	NA	False	NA	NA	False	NA	NA	NA	96058930	96065286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_96059075_96059995_96060167_96065266
transcript_91941.known	chr8	+	5135	10	FSM	ENSMUSG00000031790.9	ENSMUST00000034243.7	5135	10	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_5	7.43531778858738	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACATTCAGGAAGGTACAGG	NA	False	NA	NA	False	NA	NA	NA	96078895	96101708	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_96079647_96091941_96092091_96092921_96093051_96094555_96094864_96095186_96095349_96096108_96096363_96096760_96096900_96097323_96097475_96097633_96097750_96098732
transcript_91942.known	chr8	-	1023	5	FSM	ENSMUSG00000031796.8	ENSMUST00000212684.2	1023	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_4	193.603977231874	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGAAGAATTAGAGACGTCC	NA	False	NA	NA	False	NA	NA	NA	96161458	96147029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_96147298_96147763_96147875_96148685_96148875_96149410_96149523_96161115
transcript_91943.known	chr8	-	1295	6	FSM	ENSMUSG00000031796.8	ENSMUST00000034249.8	1295	6	0	0	0	0	multi-exon	FALSE	canonical	3	468	junction_1	23.7200337267888	2316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCTTTACTTTTTTATA	NA	False	NA	-6	True	AATAAA	-24	NA	96161497	96146876	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_96147298_96147763_96147875_96148685_96148875_96149410_96149523_96151244_96151325_96161115
transcript_91944.known	chr8	-	2544	4	FSM	ENSMUSG00000031796.8	ENSMUST00000213086.2	2544	4	0	0	0	0	multi-exon	FALSE	canonical	3	502	junction_2	10.6562449087639	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTATCTTTACTTTTTT	NA	False	NA	-9	True	AATAAA	-21	NA	96161472	96146879	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_96148875_96149410_96149523_96151244_96151325_96161115
transcript_91945.known	chr8	-	3773	12	FSM	ENSMUSG00000046707.10	ENSMUST00000056919.9	3773	12	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_1	43.8225195891393	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATGACTTTCATGGGATG	NA	False	NA	NA	False	AATAAA	-20	NA	96215455	96172723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_96175047_96179977_96180072_96182485_96182635_96184015_96184117_96186699_96186802_96187305_96187417_96188173_96188258_96192278_96192339_96199998_96200050_96203839_96203942_96214192_96214305_96214971
transcript_91947.known	chr8	-	6779	11	FSM	ENSMUSG00000046707.10	ENSMUST00000212214.2	6779	11	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_10	28.5350661467605	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGGATGGAGCGTATTTA	NA	False	NA	-6	True	AATAAA	-13	NA	96215408	96174601	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_96180072_96182485_96182635_96184015_96184117_96186699_96186802_96187305_96187417_96188173_96188258_96192278_96192339_96199998_96200050_96203839_96203942_96214192_96214305_96214971
transcript_91950.known	chr8	+	1288	9	FSM	ENSMUSG00000036598.5	ENSMUST00000041569.5	1288	9	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	2.77263412660235	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGTCCTCTCACTTGTTG	NA	False	NA	NA	False	ATTAAA	-23	NA	96260712	96285518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_96260901_96263092_96263220_96264719_96264882_96267426_96267583_96269249_96269331_96272521_96272678_96277824_96277933_96283818_96283975_96285364
transcript_91953.nnic	chr8	+	618	4	NNC	ENSMUSG00000036598.5	novel	1288	9	NA	NA	14113	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5.90668171555645	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGTCCTCTCACTTGTTG	NA	False	NA	NA	False	ATTAAA	-23	NA	96274825	96285518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_96275026_96277824_96277933_96283818_96283975_96285364
transcript_91954.nnic	chr8	+	644	4	NNC	ENSMUSG00000036598.5	novel	1288	9	NA	NA	14126	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	5.43650214343336	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGTCCTCTCACTTGTTG	NA	False	NA	NA	False	ATTAAA	-23	NA	96274838	96285518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_96275065_96277824_96277933_96283818_96283975_96285364
transcript_91957.known	chr8	+	2519	3	FSM	ENSMUSG00000031669.11	ENSMUST00000034094.11	2519	3	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_2	2	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTGTTGTCACTAACTG	NA	False	NA	NA	False	AATAAA	-14	NA	96360080	96371688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_96360412_96364437_96364672_96369734
transcript_91962.nnic	chr8	+	1009	3	NNC	ENSMUSG00000031669.11	novel	2519	3	NA	NA	10	20378	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	50.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCACTCTATTTCATATTA	NA	False	NA	NA	False	NA	NA	NA	96360090	96392066	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_96360412_96364437_96364672_96391612
transcript_91963.known	chr8	+	2738	14	FSM	ENSMUSG00000036564.18	ENSMUST00000080666.8	2738	14	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	6.1711295754251	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTGTCGTGTTTCCTATC	NA	False	NA	9	True	AATAAA	-14	NA	96429690	96441584	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_96429806_96432815_96432922_96433158_96433280_96433364_96433428_96433556_96433618_96435235_96435323_96435404_96435462_96435710_96435815_96436393_96436451_96436530_96436583_96437291_96437340_96437561_96437598_96437720_96437773_96439805
transcript_91967.nnic	chr8	+	1388	7	NIC	ENSMUSG00000031671.12	novel	1707	7	NA	NA	12	0	combination_of_known_splicesites	FALSE	canonical	3	22	junction_1	132.221720353856	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCAAACTTTCTTTAGCAC	NA	False	NA	39	True	AATAAA	-26	NA	96442520	96445638	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_96442592_96442980_96443123_96443234_96443430_96443548_96443670_96444548_96444730_96444820_96444964_96445103
transcript_9197.nnic	chr10	+	1070	3	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	-5	113	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	66.5	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTTTTGGAGGACCGAA	NA	False	NA	NA	False	NA	NA	NA	95729299	95733232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_95729528_95729968_95730152_95732573
transcript_91971.known	chr8	+	1707	7	FSM	ENSMUSG00000031671.12	ENSMUST00000034096.6	1707	7	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_4	62.8342175004105	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCAAACTTTCTTTAGCAC	NA	False	NA	39	True	AATAAA	-26	NA	96442508	96445638	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_96442899_96442980_96443123_96443234_96443430_96443548_96443670_96444548_96444730_96444820_96444964_96445103
transcript_91978.nnic	chr8	+	1086	5	NIC	ENSMUSG00000031671.12	novel	1707	7	NA	NA	12	0	combination_of_known_splicesites	TRUE	canonical	3	22	junction_1	177.171350674989	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCAAACTTTCTTTAGCAC	NA	False	NA	39	True	AATAAA	-26	NA	96442520	96445638	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_96442592_96442980_96443123_96443234_96443430_96444820_96444964_96445103
transcript_9198.nnic	chr10	+	1575	3	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	-5	618	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	66.5	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAGAAACTCAGAATATCAT	NA	False	NA	25	True	AATAAA	-18	NA	95729299	95733737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_95729528_95729968_95730152_95732573
transcript_91982.nic	chr8	+	943	4	NIC	ENSMUSG00000031671.12	novel	1707	7	NA	NA	13	0	combination_of_known_junctions	FALSE	canonical	3	5	junction_1	195.080040553159	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCAAACTTTCTTTAGCAC	NA	False	NA	39	True	AATAAA	-26	NA	96442521	96445638	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_96442592_96443234_96443430_96444820_96444964_96445103
transcript_91984.nnic	chr8	+	748	3	NIC	ENSMUSG00000031671.12	novel	1707	7	NA	NA	13	0	combination_of_known_splicesites	FALSE	canonical	3	6	junction_1	211	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCAAACTTTCTTTAGCAC	NA	False	NA	39	True	AATAAA	-26	NA	96442521	96445638	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_96442592_96444820_96444964_96445103
transcript_9199.known	chr10	+	858	3	FSM	ENSMUSG00000112400.2	ENSMUST00000218392.2	858	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	58.5	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGTGGAAGTGGGTAGG	NA	False	NA	NA	False	NA	NA	NA	95729304	95733119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_95729528_95730062_95730152_95732573
transcript_91994.known	chr8	-	481	3	FSM	ENSMUSG00000110489.2	ENSMUST00000211989.2	481	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAAATAGTACTGGTATG	NA	False	NA	-4	True	TTTAAA	-1	NA	96544902	96535179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_96535388_96539051_96539129_96544706
transcript_91995.known	chr8	-	338	3	FSM	ENSMUSG00000110489.2	ENSMUST00000212289.2	338	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	187	2969	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAAATAGTACTGGTATG	NA	False	NA	-4	True	TTTAAA	-1	NA	96544306	96535179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_96535388_96539051_96539129_96544253
transcript_91996.known	chr8	-	153	3	FSM	ENSMUSG00000110489.2	ENSMUST00000212957.2	153	3	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_1	80.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGACCCACCCAGTGGCTC	NA	False	NA	NA	False	NA	NA	NA	96544319	96535340	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_96535388_96539088_96539129_96544253
transcript_91998.known	chr8	+	789	1	FSM	ENSMUSG00000061104.6	ENSMUST00000074053.6	789	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14069	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	TATAAA	-31	NA	96551973	96552762	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_96552000_96552800
transcript_91999.known	chr8	-	4031	2	FSM	ENSMUSG00000110661.2	ENSMUST00000211921.2	4031	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTTGGTCACGTGTCT	NA	False	NA	NA	False	NA	NA	NA	96560303	96555225	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_96559220_96560266
transcript_920.known	chr1	-	6978	38	FSM	ENSMUSG00000067851.12	ENSMUST00000088615.11	6978	38	0	0	0	0	multi-exon	TRUE	canonical	3	88	junction_35	18.4564716033902	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCTGTTTTCATTGTTTT	NA	False	NA	-16	True	AATAAA	-37	NA	10302895	10207795	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_10209222_10210691_10210810_10211783_10211923_10212800_10212970_10214942_10215083_10217627_10217761_10222025_10222099_10223610_10223750_10223831_10223968_10224505_10224636_10227138_10227270_10228124_10228286_10229792_10229966_10230101_10230254_10230925_10231096_10231187_10231229_10233921_10234013_10243058_10243210_10243418_10243578_10244291_10244421_10250050_10250203_10251094_10251267_10253887_10253973_10254200_10254407_10254610_10254723_10258981_10259184_10259451_10259561_10259663_10259904_10264481_10264717_10269067_10269202_10269953_10270130_10275032_10275135_10279649_10279927_10283268_10283449_10284349_10284497_10286061_10286219_10286753_10286785_10302595
transcript_92001.known	chr8	-	3315	12	FSM	ENSMUSG00000036534.7	ENSMUST00000212270.2	3315	12	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_11	48.4964001390441	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACTGTGTCTCCTTTATC	NA	False	NA	-4	True	AATAAA	-15	NA	96580167	96562551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_96564300_96567041_96567097_96568149_96568350_96568803_96568952_96570387_96570503_96570731_96570790_96571515_96571615_96572426_96572572_96572760_96572960_96575008_96575397_96579429_96579536_96580113
transcript_92006.nnic	chr8	-	707	4	NNC	ENSMUSG00000036534.7	novel	3333	12	NA	NA	5	-5172	at_least_one_novel_splicesite	FALSE	canonical	1	9	junction_1	142.72662291559	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGATTTTATGTGTGAGTG	NA	False	NA	NA	False	NA	NA	NA	96580145	96573677	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_96573859_96575008_96575397_96579429_96579536_96580113
transcript_9201.nnic	chr10	+	1064	3	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	27	113	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	66.5	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTTTTGGAGGACCGAA	NA	False	NA	NA	False	NA	NA	NA	95729331	95733232	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_95729523_95729937_95730152_95732573
transcript_92010.nic	chr8	-	1207	2	ISM	ENSMUSG00000036534.7	ENSMUST00000212628.2	1382	9	5	6065	5	-5716	5prime_fragment	FALSE	canonical	2	6	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAGAA	NA	False	NA	NA	False	NA	NA	NA	96580145	96574221	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_96575397_96580113
transcript_92011.known	chr8	-	540	2	FSM	ENSMUSG00000036534.7	ENSMUST00000153835.2	540	2	0	0	0	0	multi-exon	FALSE	canonical	3	277	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCAAGCCTTTCATAAACT	NA	False	NA	NA	False	TATAAA	-36	NA	96570481	96568505	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_96568952_96570387
transcript_92013.known	chr8	-	2057	1	FSM	ENSMUSG00000031672.9	ENSMUST00000212861.2	2057	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	96615020	96612963	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_96613000_96615000
transcript_92014.known	chr8	-	2530	10	FSM	ENSMUSG00000031672.9	ENSMUST00000034097.8	2530	10	0	0	0	0	multi-exon	FALSE	canonical	3	353	junction_1	94.2456731822753	3621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTGTCTGCTTTTCTACT	NA	False	NA	-4	True	AATAAA	-17	NA	96615175	96590761	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_96591880_96593448_96593600_96596099_96596266_96597402_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
transcript_92015.known	chr8	+	1545	1	FSM	ENSMUSG00000071041.5	ENSMUST00000120826.2	1545	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	747	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGATCCAGTATATGCC	NA	False	NA	NA	False	NA	NA	NA	100757189	100758734	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_100757200_100758700
transcript_9202.nnic	chr10	+	1569	3	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	27	618	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	66.5	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAGAAACTCAGAATATCAT	NA	False	NA	25	True	AATAAA	-18	NA	95729331	95733737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_95729523_95729937_95730152_95732573
transcript_92033.known	chr8	-	954	1	FSM	ENSMUSG00000063696.8	ENSMUST00000076373.8	954	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	391	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCGTCAAAGCAACCAAGTC	NA	False	NA	NA	False	NA	NA	NA	103592430	103591476	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_103591500_103592400
transcript_92034.known	chr8	-	2406	10	FSM	ENSMUSG00000035824.8	ENSMUST00000050211.7	2406	10	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_4	11.1055541659718	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCATTCATTCATTCAT	NA	False	NA	6	True	AATAAA	-30	NA	104975190	104953316	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_104954984_104955844_104955926_104957176_104957257_104957791_104957881_104963403_104963478_104965375_104965466_104967747_104967802_104970016_104970092_104974278_104974317_104975032
transcript_92037.known	chr8	-	2312	9	FSM	ENSMUSG00000035824.8	ENSMUST00000211995.2	2312	9	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	19.1012924955355	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGATGTAAATTCATTTTCA	NA	False	NA	-7	True	AATAAA	-17	NA	104975183	104953329	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_104954984_104955844_104955926_104957176_104957257_104957791_104957881_104965375_104965466_104967747_104967802_104970016_104970092_104974278_104974317_104975032
transcript_92044.known	chr8	+	667	4	FSM	ENSMUSG00000054400.17	ENSMUST00000034342.13	667	4	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_3	21.1397466609439	2071	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTCTGCAGATCTCCTT	4792	False	NA	10	True	ATTAAA	-22	NA	104977492	104990079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_104977728_104983916_104984076_104988105_104988202_104989902
transcript_92045.known	chr8	+	750	5	FSM	ENSMUSG00000054400.17	ENSMUST00000212410.2	750	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_3	127.002706664071	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTCTGCAGATCTCCTT	4823	False	NA	10	True	ATTAAA	-22	NA	104977523	104990079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_104977728_104983916_104984076_104988105_104988202_104988799_104988914_104989902
transcript_92046.known	chr8	+	525	3	FSM	ENSMUSG00000054400.17	ENSMUST00000211809.2	525	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	140	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATATTTTCTGCAGATCT	4834	False	NA	6	True	ATTAAA	-18	NA	104977534	104990075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_104977728_104983916_104984076_104989902
transcript_92047.known	chr8	+	1304	2	FSM	ENSMUSG00000054400.17	ENSMUST00000212433.2	1304	2	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_1	0	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTAAAACACAGCTTAATT	4813	False	NA	NA	False	NA	NA	NA	104977513	104985006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_104977728_104983916
transcript_92048.known	chr8	+	1804	3	FSM	ENSMUSG00000054400.17	ENSMUST00000098464.6	1804	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	141	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAAAAAAAACCCA	4861	False	NA	NA	False	NA	NA	NA	104977561	104991570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_104977728_104983916_104984076_104990091
transcript_92049.nnic	chr8	-	546	3	NNC	ENSMUSG00000110642.2	novel	215	2	NA	NA	-1	423	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	0.5	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTTTGTCATTGCTCTTT	NA	False	NA	NA	False	NA	NA	NA	105039402	105037040	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_105037398_105037490_105037582_105039304
transcript_92050.known	chr8	-	215	2	FSM	ENSMUSG00000110642.2	ENSMUST00000212847.2	215	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATTTTGTACTCATTTTT	NA	False	NA	NA	False	NA	NA	NA	105039401	105037463	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_105037582_105039304
transcript_92052.known	chr8	+	850	6	FSM	ENSMUSG00000031875.8	ENSMUST00000212081.2	850	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	15.7784663386528	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTAGGGCACGTTGACAA	NA	False	NA	NA	False	NA	NA	NA	105066949	105073582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_105066992_105067311_105067528_105070389_105070546_105071408_105071505_105071903_105072025_105073363
transcript_92055.known	chr8	+	1616	5	FSM	ENSMUSG00000031875.8	ENSMUST00000034343.5	1616	5	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	6.68954408012983	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGAGTGCGCCTGACT	NA	False	NA	13	True	ATTAAA	-15	NA	105067225	105074304	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_105067528_105070389_105070546_105071408_105071505_105071903_105072025_105073363
transcript_92056.known	chr8	-	4627	13	FSM	ENSMUSG00000035770.9	ENSMUST00000041769.8	4627	13	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_6	10.797054639525	173	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTTTTGGTGACTTTGTT	1768	False	NA	-1	True	AATAAA	-20	NA	105169679	105144311	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_105147315_105148918_105149036_105149744_105149863_105150217_105150260_105152070_105152131_105152590_105152703_105154677_105154814_105156046_105156141_105157032_105157203_105163994_105164226_105167105_105167223_105169105_105169180_105169326
transcript_92065.known	chr8	-	1808	20	FSM	ENSMUSG00000031878.19	ENSMUST00000034349.10	1808	20	0	0	0	0	multi-exon	FALSE	canonical	3	645	junction_15	52.7352662859429	2288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTGTTGTCTGGAA	3333	False	NA	NA	False	AATAAA	-19	NA	105261269	105237659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254009_105254082_105254818_105254850_105256687_105256749_105257024_105257129_105261143
transcript_92066.known	chr8	-	1735	19	FSM	ENSMUSG00000031878.19	ENSMUST00000162466.8	1735	19	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_15	163.229558869982	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTGTTGTCTGGAA	3334	False	NA	NA	False	AATAAA	-19	NA	105261268	105237659	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254818_105254850_105256687_105256749_105257024_105257129_105261143
transcript_92068.known	chr8	+	1538	7	FSM	ENSMUSG00000031883.14	ENSMUST00000056051.11	1538	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.687184270936277	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTTCTCCCTGTGTGCCT	2762	False	NA	NA	False	AATAAA	-18	NA	105267438	105276975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_105267558_105270041_105270240_105274318_105274438_105274817_105274914_105275016_105275080_105275568_105275725_105276188
transcript_92070.known	chr8	+	5692	2	FSM	ENSMUSG00000048371.9	ENSMUST00000059588.8	5692	2	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	0	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCTTCCTTTAGTTCGA	NA	False	NA	NA	False	AATAAA	-16	NA	105318082	105325658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_105318228_105320111
transcript_92074.known	chr8	-	807	4	FSM	ENSMUSG00000031879.15	ENSMUST00000163140.2	807	4	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_1	52.8288641642889	335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGCCTTAGCGTCTCTCA	NA	False	NA	-3	True	AATAAA	-25	NA	105368331	105366472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_105366719_105367151_105367198_105367599_105367726_105367942
transcript_92075.known	chr8	-	639	5	FSM	ENSMUSG00000031879.15	ENSMUST00000093234.5	639	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	369.363641957353	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCCAGTATGCCTTAGCG	NA	False	NA	-10	True	AATAAA	-18	NA	105368333	105366479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_105366719_105367151_105367198_105367599_105367721_105367942_105368023_105368180
transcript_92082.nnic	chr8	+	2601	6	NNC	ENSMUSG00000031885.15	novel	395	2	NA	NA	-179	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	72.45798782743	54	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAAAGTCATGACTCTT	3567	False	NA	74	True	ATTAAA	-14	NA	105897126	105944613	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_105897202_105897937_105898025_105905224_105905342_105921106_105921224_105929083_105929211_105942535
transcript_92083.known	chr8	+	2883	6	FSM	ENSMUSG00000031885.15	ENSMUST00000052209.9	2883	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_5	43.0748186299142	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATGACTCTTTATTGATA	3746	False	NA	82	True	ATTAAA	-22	NA	105897305	105944621	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_105897686_105897937_105898025_105905224_105905342_105921106_105921224_105929083_105929180_105942535
transcript_92085.known	chr8	+	2891	6	FSM	ENSMUSG00000031885.15	ENSMUST00000109392.9	2891	6	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_5	26.6578318698277	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAAAGTCATGACTCTT	3761	False	NA	74	True	ATTAAA	-14	NA	105897320	105944613	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_105897686_105897937_105898025_105905224_105905342_105921106_105921224_105929083_105929211_105942535
transcript_92088.known	chr8	+	2709	5	FSM	ENSMUSG00000031885.15	ENSMUST00000109395.8	2709	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	76.5714535580983	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAAAGTCATGACTCTT	3816	False	NA	74	True	ATTAAA	-14	NA	105897375	105944613	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_105897686_105897937_105898025_105905224_105905342_105921106_105921224_105942535
transcript_921.known	chr1	+	2449	6	FSM	ENSMUSG00000048960.14	ENSMUST00000189385.7	2449	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	13.0629246342463	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAATTCTGTGACAGATT	NA	False	NA	NA	False	ATTAAA	-16	NA	11334186	11369818	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_11334320_11335902_11335970_11336192_11336384_11355280_11355384_11359476_11359545_11367931
transcript_9210.nic	chr10	+	1448	8	NIC	ENSMUSG00000019943.11	novel	1249	4	NA	NA	240	188	combination_of_known_junctions	FALSE	canonical	3	223	junction_6	12.7022414862697	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCGTGTTACAGGGGAAACT	NA	False	NA	NA	False	AAAAAG	-7	NA	98750507	98830617	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_+_98750656_98804555_98804987_98815565_98815764_98822752_98823008_98823102_98823229_98826923_98827065_98829728_98829768_98830507
transcript_92100.known	chr8	+	2916	16	FSM	ENSMUSG00000031889.10	ENSMUST00000034361.10	2916	16	0	0	0	0	multi-exon	TRUE	canonical	3	239	junction_9	14.7126551724093	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGCTGTTGATTTCCTT	NA	False	NA	NA	False	ACTAAA	-2	NA	105951776	105979685	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_105952119_105957759_105957843_105961113_105961198_105965054_105965099_105966302_105966383_105966609_105966705_105967472_105967571_105967658_105967772_105973052_105973187_105973469_105973554_105974727_105974811_105975374_105975419_105976050_105976095_105976228_105976288_105977350_105977424_105978229
transcript_92105.known	chr8	+	2460	15	FSM	ENSMUSG00000031889.10	ENSMUST00000141957.8	2460	15	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_6	68.2304019854935	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACAGCCTCATCTTGTA	NA	False	NA	NA	False	NA	NA	NA	105951837	105979388	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_105952119_105957759_105957843_105961113_105961198_105965054_105965099_105966302_105966383_105966609_105966705_105967658_105967772_105973052_105973187_105973469_105973554_105974727_105974811_105975374_105975419_105976050_105976095_105976228_105976288_105977350_105977424_105978229
transcript_92109.known	chr8	+	2937	14	FSM	ENSMUSG00000031889.10	ENSMUST00000156561.8	2937	14	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_8	14.5728124912566	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAAAAAATAGG	NA	False	NA	NA	False	NA	NA	NA	105951837	105977757	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_105952119_105957759_105957843_105961113_105961198_105965054_105966383_105966609_105966705_105967472_105967571_105967658_105967772_105973052_105973187_105973469_105973554_105974727_105974811_105975374_105975419_105976050_105976095_105976228_105976288_105977350
transcript_92110.known	chr8	-	642	2	FSM	ENSMUSG00000069920.11	ENSMUST00000161745.3	642	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCGTGCAGGGGGCACTC	9963	False	NA	NA	False	NA	NA	NA	105981783	105980953	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_105981475_105981662
transcript_92111.known	chr8	-	1689	5	FSM	ENSMUSG00000031887.14	ENSMUST00000034359.10	1689	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_4	9.66953980290686	153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGGTGCACGCCTTTAAT	505	False	NA	NA	False	AAAACA	-43	NA	105991241	105984917	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_105985928_105986068_105986262_105986341_105986620_105987153_105987313_105991192
transcript_92112.known	chr8	+	1901	3	FSM	ENSMUSG00000033313.12	ENSMUST00000036221.12	1901	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGATCTCGAGTCAGCT	1530	False	NA	NA	False	AATAAA	-20	NA	105991279	105995958	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_105991393_105993326_105993798_105994641
transcript_92113.known	chr8	-	2497	14	FSM	ENSMUSG00000043251.7	ENSMUST00000057855.4	2497	14	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_13	7.19467258528611	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTCTGAATCTATGTGTTG	NA	False	NA	-1	True	AATAAA	-15	NA	106022730	106016555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106016783_106016863_106016989_106017080_106017237_106017313_106017437_106017554_106017685_106018966_106019078_106019280_106019382_106019483_106019610_106019693_106019812_106019883_106020494_106021596_106021817_106021891_106022068_106022257_106022339_106022537
transcript_92116.known	chr8	-	3552	8	FSM	ENSMUSG00000014837.16	ENSMUST00000171788.8	3552	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_6	10.3628063333269	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTGTGGCTTCTGTCTA	NA	False	NA	-3	True	NA	NA	NA	106016160	106007041	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106008777_106009618_106009717_106009806_106010113_106011297_106011431_106011661_106011806_106011887_106012502_106015400_106015798_106016035
transcript_9212.known	chr10	+	7130	21	FSM	ENSMUSG00000019943.11	ENSMUST00000020107.8	7130	21	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	42.6978922196401	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGGACTGAACTTTTTGAC	NA	False	NA	12	True	AATAAA	-24	NA	98751013	98862005	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_98751234_98804555_98804987_98815565_98815764_98822752_98823008_98823102_98823229_98826923_98827065_98829728_98829768_98830507_98830670_98832629_98832845_98835600_98835844_98837149_98837392_98839002_98839241_98845265_98845446_98846063_98846152_98846535_98846643_98850320_98850513_98850745_98850960_98851345_98851558_98852784_98852893_98854576_98854760_98858669
transcript_92121.known	chr8	-	3492	7	FSM	ENSMUSG00000014837.16	ENSMUST00000014981.8	3492	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	11.0302614051829	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGGCTTCTGTCTAC	NA	False	NA	-2	True	NA	NA	NA	106016496	106007040	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106008777_106009618_106009717_106009806_106010113_106011297_106011431_106011661_106011806_106011887_106012502_106016035
transcript_92125.known	chr8	+	1993	10	FSM	ENSMUSG00000014859.10	ENSMUST00000015003.10	1993	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	369.398142461925	201	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGATCTGGTTCTTTGG	NA	False	NA	21	True	AATAAA	-17	NA	106024294	106032002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106024508_106024912_106025023_106025166_106025329_106025627_106025672_106026689_106026752_106026950_106027249_106027884_106028098_106030816_106030865_106031064_106031110_106031204
transcript_92128.known	chr8	+	3189	20	FSM	ENSMUSG00000014791.11	ENSMUST00000109375.4	3189	20	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_11	6.90778195396653	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAATAAAACAAAAAC	NA	False	NA	NA	False	ATTAAA	-44	NA	106032240	106037392	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106032462_106032598_106032640_106032746_106032820_106033009_106033061_106033227_106033398_106033485_106033586_106033670_106033823_106033919_106033999_106034094_106034146_106034226_106034350_106034433_106034566_106034665_106034768_106034863_106034973_106035080_106035218_106035303_106035468_106035553_106035667_106035745_106035851_106035956_106036040_106036124_106036212_106036296
transcript_92129.known	chr8	+	2351	19	FSM	ENSMUSG00000014791.11	ENSMUST00000212033.2	2351	19	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	8.33425920782464	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATGTGTTAAATCAGCTC	NA	False	NA	6	True	AATAAA	-17	NA	106032244	106036609	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106032462_106032598_106032640_106032746_106032820_106033227_106033398_106033485_106033586_106033670_106033823_106033919_106033999_106034094_106034146_106034226_106034350_106034433_106034566_106034665_106034768_106034863_106034973_106035080_106035218_106035303_106035468_106035553_106035667_106035745_106035851_106035956_106036040_106036124_106036212_106036296
transcript_9213.nic	chr10	+	1299	6	NIC	ENSMUSG00000019943.11	novel	1249	4	NA	NA	240	2738	combination_of_known_junctions	FALSE	canonical	3	240	junction_3	8.61626369141521	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGGTGTGGCGGTTTGCTG	NA	False	NA	NA	False	NA	NA	NA	98750507	98827064	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_+_98750656_98804555_98804987_98815565_98815764_98822752_98823008_98823102_98823229_98826923
transcript_92130.known	chr8	-	3928	22	FSM	ENSMUSG00000014778.11	ENSMUST00000014922.5	3928	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	2.64789309989673	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGAGCCTTTCTCTTCTTT	NA	False	NA	-1	True	AATAAA	-19	NA	106074585	106055794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106056112_106056200_106056402_106056478_106056642_106056726_106056920_106057018_106057210_106057760_106057923_106058001_106058122_106058273_106058457_106058668_106058825_106059541_106060237_106061318_106061435_106063013_106063194_106063270_106063429_106063518_106063663_106063754_106063850_106063949_106064062_106064306_106064402_106064483_106064590_106064661_106064730_106065033_106065099_106065485_106065593_106074284
transcript_92141.known	chr8	+	785	6	FSM	ENSMUSG00000014856.13	ENSMUST00000015000.12	785	6	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_4	56.0556865982391	3589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCGTGTGGGTGATGATG	251	False	NA	18	True	AATAAA	-20	NA	106052985	106055689	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953_106055091_106055239_106055325_106055403
transcript_92142.known	chr8	+	801	6	FSM	ENSMUSG00000014856.13	ENSMUST00000153146.9	801	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	152.856010676715	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGGCCGTGTGGGTGATGA	259	False	NA	16	True	AATAAA	-18	NA	106052993	106055687	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953_106055117_106055239_106055325_106055403
transcript_92143.known	chr8	+	895	5	FSM	ENSMUSG00000014856.13	ENSMUST00000126705.9	895	5	0	0	0	0	multi-exon	FALSE	canonical	3	392	junction_2	13.1909059582729	735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAACGGCCGTGTGGGTGA	1	True	NA	13	True	AATAAA	-15	NA	106053019	106055684	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953_106055325_106055403
transcript_92149.known	chr8	-	1127	4	FSM	ENSMUSG00000014846.13	ENSMUST00000014990.13	1127	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	3.55902608401044	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGACTGACTCAGTCTACA	NA	False	NA	0	True	AATAAA	-19	NA	106198158	106194124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106194657_106194787_106194942_106195071_106195266_106197911
transcript_92158.known	chr8	-	1629	8	FSM	ENSMUSG00000013160.8	ENSMUST00000013304.8	1629	8	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_1	38.5115938016444	977	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGCTGTCTGTCTGCTCC	NA	False	NA	-10	True	AATAAA	-18	NA	106292679	106251096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106251697_106251788_106251867_106251954_106252132_106252255_106252334_106255805_106255886_106257446_106257626_106265952_106266125_106292414
transcript_92161.known	chr8	+	4108	22	FSM	ENSMUSG00000038604.10	ENSMUST00000043531.10	4108	22	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_11	11.8587682955494	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTTCCTACATGGCTT	2642	False	NA	7	True	NA	NA	NA	106331886	106348851	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106331983_106341030_106341158_106341272_106341426_106341574_106341654_106342059_106342084_106342175_106342230_106342344_106342498_106342610_106342675_106342759_106342804_106342889_106343016_106343509_106343659_106343733_106343864_106343947_106345358_106345445_106345568_106346419_106346553_106346810_106346947_106347046_106347209_106347481_106347641_106347745_106347943_106348025_106348110_106348202_106348294_106348436
transcript_92162.known	chr8	+	3782	12	FSM	ENSMUSG00000005698.16	ENSMUST00000005841.16	3782	12	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_10	73.0190736997323	227	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGAAGACTCCGTCTTTT	NA	False	NA	38	True	AATAAA	-21	NA	106363210	106409554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106363353_106370147_106370265_106390385_106391176_106391487_106391659_106393290_106393425_106396862_106396984_106397922_106398073_106401500_106401662_106402627_106402811_106403846_106403983_106406702_106406892_106408066
transcript_92166.nnic	chr8	-	941	6	NNC	ENSMUSG00000005705.11	novel	674	5	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2.28035085019828	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTAAAGCTGTGGTTATTT	NA	False	NA	NA	False	AATAAA	-17	NA	106306505	106293329	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_106293571_106293751_106293835_106293991_106294125_106294237_106294359_106295690_106295830_106306281
transcript_92167.known	chr8	-	674	5	FSM	ENSMUSG00000005705.11	ENSMUST00000194654.2	674	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	1.58113883008419	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCAAGCTGGGTACGGCCAC	NA	False	NA	NA	False	NA	NA	NA	106306477	106293429	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106293571_106293751_106293835_106293991_106294125_106294237_106294359_106306281
transcript_9217.known	chr10	+	2862	12	FSM	ENSMUSG00000019952.16	ENSMUST00000020113.15	2862	12	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_11	10.2158522093674	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAAAAAATGAAATGTA	NA	False	NA	NA	False	NA	NA	NA	98942897	99033850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_98943086_98943653_98943739_98960692_98960865_98965344_98965525_98980096_98980205_98980340_98980457_98988662_98988797_98990930_98991000_98992063_98992214_99000730_99000812_99028643_99028860_99032487
transcript_92177.known	chr8	-	375	2	FSM	ENSMUSG00000098120.2	ENSMUST00000182863.2	375	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCTTCTTCTTCTTCTTC	NA	False	NA	NA	False	AATAAA	-29	NA	106363982	106350967	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106351108_106363747
transcript_92178.known	chr8	-	332	2	FSM	ENSMUSG00000098120.2	ENSMUST00000182046.2	332	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGACCACCTCAGCCTCT	NA	False	NA	NA	False	AATAAA	-15	NA	106364117	106350981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106351108_106363911
transcript_92179.known	chr8	-	880	1	FSM	ENSMUSG00000110686.2	ENSMUST00000212546.2	880	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1975	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGGTTTTTATATGAGAAA	NA	False	NA	NA	False	NA	NA	NA	106312832	106311952	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106312000_106312800
transcript_92181.known	chr8	-	1408	10	FSM	ENSMUSG00000038000.11	ENSMUST00000212650.2	1408	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	81.9332760750787	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGGAGAGAGATTCAGGG	NA	False	NA	-13	True	AATAAA	-16	NA	106427734	106424789	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106424961_106425039_106425132_106425245_106425596_106426026_106426124_106426210_106426363_106426492_106426528_106426635_106426793_106426913_106426991_106427078_106427173_106427551
transcript_92182.known	chr8	-	2722	12	FSM	ENSMUSG00000038000.11	ENSMUST00000211870.2	2722	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	76.7946709583634	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCATGTGTTTCTCCCTTCT	NA	False	NA	NA	False	NA	NA	NA	106427717	106422491	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106422611_106423714_106424961_106425039_106425132_106425245_106425596_106426026_106426124_106426210_106426363_106426492_106426528_106426635_106426793_106426913_106426991_106427078_106427173_106427334_106427472_106427551
transcript_92183.known	chr8	-	1182	9	FSM	ENSMUSG00000038000.11	ENSMUST00000212642.2	1182	9	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_4	85.2304779700314	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGGAGAGAGATTCAGGG	NA	False	NA	-13	True	AATAAA	-16	NA	106427685	106424789	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106424961_106425039_106425132_106425245_106425596_106426026_106426124_106426492_106426528_106426635_106426681_106426913_106427035_106427334_106427472_106427551
transcript_92184.known	chr8	+	1273	3	FSM	ENSMUSG00000005699.17	ENSMUST00000098444.9	1273	3	0	0	0	0	multi-exon	FALSE	canonical	2	20	junction_1	3	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATGTGGTCCTTCTGTGTC	NA	False	NA	11	True	ATTAAA	-17	NA	106427785	106430125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106427950_106428805_106429029_106429239
transcript_92185.known	chr8	+	1234	3	FSM	ENSMUSG00000005699.17	ENSMUST00000212352.2	1234	3	0	0	0	0	multi-exon	FALSE	canonical	2	20	junction_1	6.5	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGATGTGGTCCTTCTGT	NA	False	NA	8	True	ATTAAA	-14	NA	106427818	106430122	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106427950_106428805_106429029_106429242
transcript_92187.known	chr8	+	678	3	FSM	ENSMUSG00000005699.17	ENSMUST00000212634.2	678	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	13	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGCTGAGAGTACAGGGC	NA	False	NA	NA	False	NA	NA	NA	106427779	106429555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106427919_106428805_106429029_106429239
transcript_92188.nic	chr8	+	1269	3	NIC	ENSMUSG00000005699.17	novel	1273	3	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	16.5	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATGTGGTCCTTCTGTGTC	NA	False	NA	11	True	ATTAAA	-17	NA	106427755	106430125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_106427919_106428805_106429029_106429242
transcript_92189.nnic	chr8	+	1329	3	NNC	ENSMUSG00000005699.17	novel	1273	3	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	12.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATGTGGTCCTTCTGTGTC	NA	False	NA	11	True	ATTAAA	-17	NA	106427778	106430125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_106427999_106428805_106429029_106429239
transcript_92191.known	chr8	+	1179	3	FSM	ENSMUSG00000005699.17	ENSMUST00000211888.2	1179	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	7	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTCCTTCTGTGTCCCA	NA	False	NA	14	True	ATTAAA	-20	NA	106428278	106430128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106428436_106428805_106428939_106429239
transcript_92192.known	chr8	+	1265	3	FSM	ENSMUSG00000005699.17	ENSMUST00000093195.7	1265	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	5.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGATGTGGTCCTTCTGTGT	NA	False	NA	10	True	ATTAAA	-16	NA	106428278	106430124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106428436_106428805_106429029_106429239
transcript_92193.known	chr8	+	1261	3	FSM	ENSMUSG00000005699.17	ENSMUST00000212430.2	1261	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	9	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATGTGGTCCTTCTGTGTC	NA	False	NA	11	True	ATTAAA	-17	NA	106428280	106430125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106428436_106428805_106429029_106429242
transcript_92195.known	chr8	+	310	1	FSM	ENSMUSG00000005699.17	ENSMUST00000212972.2	310	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCCTTCGGATTGGTC	NA	False	NA	NA	False	AATAAA	-14	NA	106427782	106428092	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106427800_106428100
transcript_92196.nnic	chr8	-	1396	8	NNC	ENSMUSG00000013155.11	novel	1275	7	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_7	49.3529562003563	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTGTGTTCCATAGGAG	NA	False	NA	-15	True	ATTAAA	-14	NA	106434806	106430283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455_106434556_106434675
transcript_92198.nnic	chr8	-	1338	8	NNC	ENSMUSG00000013155.11	novel	1275	7	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_7	45.9436211734623	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTGTGTTCCATAGGAG	NA	False	NA	-15	True	ATTAAA	-14	NA	106434861	106430283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455_106434556_106434788
transcript_92208.known	chr8	+	1097	4	FSM	ENSMUSG00000013158.7	ENSMUST00000211852.2	1097	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTGGAGGAAGGAATTTTA	NA	False	NA	NA	False	NA	NA	NA	106434934	106436800	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106435148_106435427_106435646_106436031_106436217_106436319
transcript_9221.nnic	chr10	-	675	3	Genic_Genomic	ENSMUSG00000112346.2	novel	2290	1	NA	NA	1121	1919	multi-exon	FALSE	canonical	0	0	junction_2	1.5	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGTGGAGGTAAGAGTTAT	NA	False	NA	NA	False	CATAAA	-11	NA	98942821	98939733	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr10_-_98939923_98942100_98942288_98942522
transcript_92212.known	chr8	-	1275	7	FSM	ENSMUSG00000013155.11	ENSMUST00000013299.11	1275	7	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_2	11.5854314646552	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTGTGTTCCATAGGAG	NA	False	NA	-15	True	ATTAAA	-14	NA	106434565	106430283	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455
transcript_92213.known	chr8	-	1568	6	FSM	ENSMUSG00000013155.11	ENSMUST00000212716.2	1568	6	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_2	9.8508882848198	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTGTTCCATAGGAGC	NA	False	NA	-14	True	ATTAAA	-15	NA	106434777	106430282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180
transcript_92214.known	chr8	-	951	4	FSM	ENSMUSG00000013150.16	ENSMUST00000155038.3	951	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	11.1455023315337	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGACGAGCTTATGGGG	NA	False	NA	NA	False	NA	NA	NA	106485262	106444048	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106444283_106449480_106449677_106454619_106454964_106485085
transcript_92218.known	chr8	-	4352	3	FSM	ENSMUSG00000013150.16	ENSMUST00000013294.16	4352	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	4	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCACTTGAAAAAAGGTCTT	NA	False	NA	NA	False	NA	NA	NA	106485296	106440485	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106444283_106454619_106454964_106485085
transcript_92219.nnic	chr8	-	780	3	NNC	ENSMUSG00000013150.16	novel	4352	3	NA	NA	0	2655	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_1	14	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGCATGTCTATATATATT	NA	False	NA	NA	False	AATAAA	-26	NA	106485296	106451077	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_106451303_106454619_106454964_106485085
transcript_9222.nnic	chr10	-	451	3	Genic_Genomic	ENSMUSG00000112346.2	novel	2290	1	NA	NA	1084	1919	multi-exon	FALSE	canonical	2	2	junction_2	0.5	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGTGGAGGTAAGAGTTAT	NA	False	NA	NA	False	CATAAA	-11	NA	98942858	98939733	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr10_-_98939923_98942100_98942288_98942783
transcript_92220.nnic	chr8	-	609	3	NNC	ENSMUSG00000013150.16	novel	4352	3	NA	NA	-24	-12028	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCTTGTCTCAAACTGGG	NA	False	NA	NA	False	AATAAA	-37	NA	106485320	106465760	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_106466069_106468385_106468452_106485085
transcript_92224.known	chr8	-	1426	3	FSM	ENSMUSG00000037415.8	ENSMUST00000212856.2	1426	3	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_2	3.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGATTTATT	NA	False	NA	NA	False	NA	NA	NA	106553837	106531158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106532217_106552709_106552822_106553581
transcript_92229.known	chr8	-	1814	13	FSM	ENSMUSG00000036672.6	ENSMUST00000040776.6	1814	13	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_3	25.0593739391514	628	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGAAAGTTAGCGATATT	NA	False	NA	NA	False	ATTAAA	-12	NA	106578686	106571308	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106571628_106571705_106571811_106571891_106572069_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576346_106576464_106576556_106578502
transcript_92230.known	chr8	+	1819	1	FSM	ENSMUSG00000036442.9	ENSMUST00000040445.9	1819	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGGGTTTCGACTTTTTT	NA	False	NA	12	True	ATTAAA	-19	NA	106581763	106583582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106581800_106583600
transcript_92231.known	chr8	-	1012	1	FSM	ENSMUSG00000110586.2	ENSMUST00000212850.2	1012	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	106586946	106585934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106585900_106586900
transcript_92234.known	chr8	+	948	5	FSM	ENSMUSG00000008450.9	ENSMUST00000008594.9	948	5	0	0	0	0	multi-exon	FALSE	canonical	3	2641	junction_1	453.90775494587	2198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAACAGTTTAAATTGTTT	NA	False	NA	-8	True	AATAAA	-15	NA	106587211	106605962	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106587338_106602165_106602291_106602985_106603058_106603141_106603241_106605436
transcript_92236.known	chr8	+	518	4	FSM	ENSMUSG00000008450.9	ENSMUST00000212398.2	518	4	0	0	0	0	multi-exon	FALSE	canonical	3	2641	junction_1	479.48606746066	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTTTACCTTCCCCGCTC	NA	False	NA	NA	False	NA	NA	NA	106587296	106603421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106587338_106602165_106602291_106602985_106603058_106603141
transcript_92238.known	chr8	+	4780	29	FSM	ENSMUSG00000036270.17	ENSMUST00000040254.16	4780	29	0	0	0	0	multi-exon	TRUE	canonical	3	268	junction_16	54.5128121057194	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTCTTTGATGTGACTA	3256	False	NA	31	True	AATAAA	-23	NA	106607512	106619857	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106607791_106611132_106611290_106611664_106611777_106612065_106612166_106612414_106612605_106612719_106612868_106612950_106613056_106613381_106613492_106613585_106613670_106613749_106613846_106613932_106614036_106614137_106614319_106614413_106614487_106614585_106614678_106614752_106614941_106615019_106615151_106615230_106615388_106615735_106616173_106616256_106616362_106616450_106616604_106616692_106616730_106616871_106617050_106617153_106617310_106617396_106617513_106617599_106617766_106617850_106618038_106618127_106618348_106618898_106619063_106619301
transcript_92244.known	chr8	+	603	3	FSM	ENSMUSG00000044287.7	ENSMUST00000118920.2	603	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	2.5	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCAAGTTGGTTCCTTTCT	NA	False	NA	NA	False	ATTAAA	-15	NA	106620203	106621649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106620300_106621000_106621113_106621254
transcript_92245.known	chr8	+	3255	3	FSM	ENSMUSG00000048310.9	ENSMUST00000049699.9	3255	3	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	10	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGAAGGCTGCCATTTTTT	NA	False	NA	-13	True	AATAAA	-17	NA	106627072	106658410	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106627173_106639251_106640279_106656282
transcript_92249.known	chr8	-	3811	24	FSM	ENSMUSG00000017765.18	ENSMUST00000034370.17	3811	24	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_23	38.1304595706627	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTGCTCCGGCTC	NA	False	NA	-4	True	AATAAA	-18	NA	106692729	106670224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106670806_106670906_106671041_106671153_106671339_106671766_106671875_106671971_106672104_106672192_106672363_106672476_106672673_106673322_106673492_106673688_106673794_106674124_106674245_106674484_106674584_106675769_106675889_106676285_106676461_106676828_106676887_106677136_106677236_106677327_106677493_106678053_106678269_106678411_106678654_106680439_106680571_106682058_106682114_106682212_106682360_106685989_106686122_106687307_106687403_106692550
transcript_92250.known	chr8	-	1311	8	FSM	ENSMUSG00000031897.10	ENSMUST00000034369.10	1311	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_7	110.839468399582	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTTAAACAGAAGGCTGTG	NA	False	NA	-11	True	AATAAA	-16	NA	106665076	106662370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106662538_106662627_106662780_106663327_106663387_106663497_106663614_106663872_106664014_106664125_106664224_106664310_106664399_106664586
transcript_92253.known	chr8	-	426	4	FSM	ENSMUSG00000031897.10	ENSMUST00000212332.2	426	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	117.139043685509	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACAGAAGGCTGTGTCTT	NA	False	NA	-7	True	AATAAA	-20	NA	106663657	106662366	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106662538_106662627_106662780_106663327_106663387_106663613
transcript_92256.known	chr8	-	554	4	FSM	ENSMUSG00000031897.10	ENSMUST00000212686.2	554	4	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_3	46.7784375778224	1573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAACAGAAGGCTGTGTCT	NA	False	NA	-8	True	AATAAA	-19	NA	106663670	106662367	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106662538_106662627_106662780_106663327_106663387_106663497
transcript_92257.known	chr8	-	646	3	FSM	ENSMUSG00000031897.10	ENSMUST00000212938.2	646	3	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_1	9	629	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAACACTTAAACAGAAGG	NA	False	NA	-16	True	AATAAA	-11	NA	106663659	106662375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106662538_106662627_106662780_106663327
transcript_9226.nnic	chr10	+	1275	2	Genic_Genomic	ENSMUSG00000091101.3	novel	927	1	NA	NA	-997	270	multi-exon	FALSE	canonical	0	0	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGTATTCTAGAGTCATAA	NA	False	NA	NA	False	AATAAA	-18	NA	100175700	100177894	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr10_+_100175773_100176691
transcript_92263.known	chr8	+	1860	16	FSM	ENSMUSG00000031901.13	ENSMUST00000034375.11	1860	16	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_9	22.4047613987146	517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCCACCTGCTTCAACCT	NA	False	NA	12	True	AATAAA	-12	NA	106738138	106780451	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106738211_106742455_106742598_106752537_106752584_106756983_106757076_106758329_106758374_106760354_106760416_106762609_106762658_106768455_106768522_106768657_106768729_106771429_106771517_106772532_106772702_106775284_106775407_106776948_106777099_106778433_106778522_106779637_106779712_106779923
transcript_92270.known	chr8	+	1837	15	FSM	ENSMUSG00000031901.13	ENSMUST00000119736.8	1837	15	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_4	52.5452186216786	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCCTGACATAATTTTTC	NA	False	NA	33	True	AATAAA	-33	NA	106738138	106780472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106738211_106742455_106742598_106752537_106752584_106756983_106757076_106760354_106760416_106762609_106762658_106768455_106768522_106768657_106768729_106771429_106771517_106772532_106772702_106775284_106775407_106776948_106777099_106778433_106778522_106779637_106779712_106779923
transcript_92278.known	chr8	-	1698	10	FSM	ENSMUSG00000031898.10	ENSMUST00000034371.9	1698	10	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	8.79955105476592	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGAGCCCTCGTCCTC	NA	False	NA	1	True	AATAAA	-21	NA	106706061	106700144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106700484_106701326_106701463_106701813_106701890_106702751_106702837_106703892_106704070_106704191_106704262_106704531_106704674_106704773_106704904_106705343_106705471_106705645
transcript_92279.nnic	chr8	-	1812	10	NNC	ENSMUSG00000031898.10	novel	1698	10	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	15.663120165961	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGAGCCCTCGTCCTC	NA	False	NA	1	True	AATAAA	-21	NA	106706088	106700144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_106700484_106701326_106701463_106701813_106701890_106702751_106702837_106703892_106704070_106704191_106704262_106704531_106704674_106704773_106704904_106705343_106705558_106705645
transcript_9228.nnic	chr10	+	1260	2	Genic_Genomic	ENSMUSG00000112931.2	novel	910	1	NA	NA	-957	270	multi-exon	FALSE	canonical	3	20	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGTATTCTAGAGTCATAA	NA	False	NA	NA	False	AATAAA	-18	NA	100180876	100183013	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr10_+_100180949_100181825
transcript_92283.known	chr8	+	777	4	FSM	ENSMUSG00000031901.13	ENSMUST00000141374.2	777	4	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_1	8.05536398239638	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	106738153	106757515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106738211_106742455_106742598_106752537_106752584_106756983
transcript_92285.known	chr8	-	2262	1	FSM	ENSMUSG00000045538.7	ENSMUST00000058579.7	2262	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	287	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTATGTCATGATTTCTTT	NA	False	NA	-9	True	AATAAA	-17	NA	106738514	106736252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106736300_106738500
transcript_92286.known	chr8	-	1702	11	FSM	ENSMUSG00000053687.16	ENSMUST00000034373.8	1702	11	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	0.66332495807108	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACAGATGTGAGTGTCC	NA	False	NA	NA	False	AGTAAA	-13	NA	106718391	106711581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106711914_106712025_106712162_106712812_106712889_106714715_106714801_106715310_106715488_106715583_106715654_106715873_106716016_106716100_106716231_106716523_106716651_106717227_106717543_106718279
transcript_92287.known	chr8	-	3536	15	FSM	ENSMUSG00000084128.11	ENSMUST00000115979.9	3536	15	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_13	4.96929346597888	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCATGCTCTACATGTTAA	NA	False	NA	NA	False	TATAAA	-19	NA	106863606	106856950	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106858216_106858295_106858462_106858737_106858925_106859036_106859236_106859326_106859540_106859640_106859943_106860082_106860126_106860204_106860338_106860410_106860522_106860591_106860647_106860865_106860965_106861241_106861357_106861454_106861569_106862988_106863118_106863201
transcript_92289.known	chr8	+	984	2	FSM	ENSMUSG00000086390.8	ENSMUST00000145343.2	984	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCCTCCCGATTCTCGGGA	NA	False	NA	NA	False	NA	NA	NA	106863696	106865157	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106863983_106864459
transcript_92290.known	chr8	+	2706	6	FSM	ENSMUSG00000031903.8	ENSMUST00000034377.8	2706	6	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_2	8.49941174435031	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGCCTTGTCCTGCTCTGA	6197	False	NA	14	True	AATAAA	-20	NA	106877030	106891347	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106877246_106881499_106881657_106886794_106886914_106887212_106887312_106887715_106887941_106889456
transcript_92291.known	chr8	+	2578	6	FSM	ENSMUSG00000031903.8	ENSMUST00000212963.2	2578	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	47.4088599314516	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGGTGCCTTGTCCTGCTC	6197	False	NA	11	True	AATAAA	-17	NA	106877030	106891344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106877246_106881499_106881657_106886794_106886914_106887212_106887312_106887840_106887941_106889456
transcript_92292.known	chr8	+	2672	11	FSM	ENSMUSG00000031904.6	ENSMUST00000212377.2	2672	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	147.708801362681	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATATACAGATAAGTCACAT	1850	False	NA	NA	False	NA	NA	NA	106895506	106924477	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106895587_106905733_106905920_106906118_106906293_106916248_106916375_106918970_106919116_106919782_106919907_106920124_106920229_106921052_106921150_106921993_106922144_106922484_106922669_106923175
transcript_92293.known	chr8	+	3750	10	FSM	ENSMUSG00000031904.6	ENSMUST00000034378.5	3750	10	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_7	138.200159010825	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACAGTTGCCATTGGTTCT	1832	False	NA	4	True	AATAAA	-18	NA	106895488	106925338	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106895587_106905733_106906293_106916248_106916375_106918970_106919116_106919782_106919907_106920124_106920229_106921052_106921150_106921993_106922144_106922484_106922669_106923175
transcript_92301.known	chr8	+	3200	9	FSM	ENSMUSG00000031904.6	ENSMUST00000213020.2	3200	9	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_6	138.341911129636	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGAAAAACCTCACTACTC	1850	False	NA	NA	False	NA	NA	NA	106895506	106924139	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106895587_106905733_106906293_106916248_106916375_106918970_106919907_106920124_106920229_106921052_106921150_106921993_106922144_106922484_106922669_106923175
transcript_92306.known	chr8	-	1475	1	FSM	ENSMUSG00000033106.7	ENSMUST00000212587.2	1475	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACAAAAAAAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	106937565	106936090	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106936100_106937600
transcript_92307.known	chr8	-	1246	5	FSM	ENSMUSG00000033106.7	ENSMUST00000035925.7	1246	5	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	2.91547594742265	698	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCCTGGTGGTTTTTCTG	NA	False	NA	-6	True	NA	NA	NA	106937565	106927348	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_106927782_106928862_106928984_106930962_106931173_106936996_106937264_106937350
transcript_92308.known	chr8	+	3472	18	FSM	ENSMUSG00000060098.12	ENSMUST00000071592.12	3472	18	0	0	0	0	multi-exon	FALSE	canonical	3	978	junction_13	68.9507622326015	768	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCTTTGTCTTTTAAAAC	1819	False	NA	NA	False	ATTAAA	-7	NA	106937567	106979426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106937715_106939007_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964035_106967817_106967946_106968742_106968879_106969926_106970011_106970433_106970482_106971288_106971379_106973694_106973857_106974980_106975056_106976939_106977101_106977828_106977926_106978110
transcript_92309.known	chr8	+	1094	6	FSM	ENSMUSG00000060098.12	ENSMUST00000109297.8	1094	6	0	0	0	0	multi-exon	FALSE	canonical	3	1054	junction_4	40.5186376868719	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCATAGAAACTCATGTGC	1906	False	NA	NA	False	NA	NA	NA	106937654	106962021	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106937715_106939007_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479
transcript_92310.known	chr8	+	2277	10	FSM	ENSMUSG00000060098.12	ENSMUST00000147063.8	2277	10	0	0	0	0	multi-exon	FALSE	canonical	3	1011	junction_8	50.6318106225087	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAAGCCTGT	1920	False	NA	NA	False	AATAAA	-5	NA	106937668	106969817	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_106937715_106939007_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964035_106967817_106967946_106968742
transcript_92311.known	chr8	+	2195	5	FSM	ENSMUSG00000031907.10	ENSMUST00000212874.2	2195	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	7.8541390362025	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACAGGCTTCTTGTAGAAC	NA	False	NA	NA	False	ATTAAA	-20	NA	107142030	107152361	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_107142119_107142335_107142403_107145702_107145830_107146146_107146243_107150544
transcript_92312.known	chr8	+	2632	4	FSM	ENSMUSG00000031907.10	ENSMUST00000034382.8	2632	4	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	5.09901951359278	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGTATGGCCAAGGCTCAT	NA	False	NA	NA	False	AAGAAA	-13	NA	107141970	107152521	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_107142403_107145702_107145830_107146146_107146243_107150544
transcript_92315.known	chr8	+	4384	16	FSM	ENSMUSG00000061048.9	ENSMUST00000080797.8	4384	16	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	6.02218122167265	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATTATATGTAAGTACAC	NA	False	NA	NA	False	AATACA	-20	NA	107237522	107283929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_107237639_107237855_107237974_107262039_107262114_107263192_107263319_107263447_107263604_107263705_107263851_107265625_107265802_107266426_107266556_107267938_107268125_107270282_107270525_107270748_107270895_107271634_107271860_107274253_107274464_107279020_107279152_107279497_107279645_107281872
transcript_92321.known	chr8	-	342	1	FSM	ENSMUSG00000060019.7	ENSMUST00000073722.7	342	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4419	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTGCTTTTGTTAAGTT	NA	False	NA	NA	False	NA	NA	NA	107299982	107299640	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_107299600_107300000
transcript_92322.known	chr8	+	4430	16	FSM	ENSMUSG00000000303.13	ENSMUST00000000312.12	4430	16	0	0	0	0	multi-exon	FALSE	canonical	3	808	junction_8	93.5918799896658	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGGCTCACTTGATTTG	5049	False	NA	26	True	ATTAAA	-18	NA	107329982	107396878	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
transcript_92326.nic	chr8	+	914	2	ISM	ENSMUSG00000000303.13	ENSMUST00000167688.2	3203	17	-74	64400	-46	-48957	5prime_fragment	FALSE	canonical	3	854	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAGCTCTGACTCATACAT	5003	False	NA	NA	False	AAAAAG	-5	NA	107329936	107331594	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_107330175_107330918
transcript_92327.known	chr8	+	4409	18	FSM	ENSMUSG00000041949.7	ENSMUST00000048359.5	4409	18	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_2	14.9330686662985	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	1113	False	NA	NA	False	NA	NA	NA	107409699	107578071	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_107409888_107415283_107415925_107419198_107419316_107422080_107422229_107423235_107423373_107425587_107425751_107426796_107426880_107443240_107443354_107444601_107444779_107447285_107447416_107451725_107451918_107462317_107462453_107468644_107469104_107473925_107473984_107508325_107508467_107533672_107533825_107545087_107545202_107576810
transcript_92329.known	chr8	-	2890	4	FSM	ENSMUSG00000046691.15	ENSMUST00000175940.2	2890	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	147.606082379947	466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGCTGTCGCTCCATTT	NA	False	NA	-31	True	AATAAA	-13	NA	107619847	107610525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_107613159_107613551_107613670_107613932_107613989_107619764
transcript_92330.known	chr8	-	2931	4	FSM	ENSMUSG00000046691.15	ENSMUST00000177068.8	2931	4	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_2	18.5472369909914	595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCTGCTTGTTTTTTTTA	NA	False	NA	0	True	AATAAA	-44	NA	107620225	107610494	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_107613159_107613551_107613670_107613932_107613989_107620132
transcript_92333.known	chr8	-	369	3	FSM	ENSMUSG00000117748.2	ENSMUST00000176437.9	369	3	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	124	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAGAACCCCGGATTTTC	NA	False	NA	NA	False	AAGAAA	-4	NA	107620223	107612936	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_107613159_107613932_107613989_107620132
transcript_9234.nnic	chr10	+	1260	2	Genic_Genomic	ENSMUSG00000112856.2	novel	910	1	NA	NA	-957	270	multi-exon	FALSE	canonical	3	20	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGTATTCTAGAGTCATAA	NA	False	NA	NA	False	AATAAA	-18	NA	100185997	100188134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr10_+_100186070_100186946
transcript_92341.known	chr8	+	2232	17	FSM	ENSMUSG00000041438.9	ENSMUST00000047629.7	2232	17	0	0	0	0	multi-exon	TRUE	canonical	3	1046	junction_1	100.936996902771	1992	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACTAGACATTTTAAATTA	NA	False	NA	12	True	AATAAA	-17	NA	107620282	107649720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_107620345_107621222_107621384_107624691_107624884_107625073_107625159_107627477_107627568_107630864_107631077_107632756_107632929_107633021_107633114_107634836_107634934_107637573_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107644310_107645251_107645438_107648803_107648915_107649496
transcript_9236.nnic	chr10	+	1208	2	Genic_Genomic	ENSMUSG00000091552.3	novel	883	1	NA	NA	-6122	206	multi-exon	FALSE	canonical	2	11	junction_1	0	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTATTTTGTGGATAAATAG	NA	False	NA	NA	False	AATACA	-16	NA	100185974	100193185	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr10_+_100186070_100192072
transcript_92360.known	chr8	+	3113	15	FSM	ENSMUSG00000041438.9	ENSMUST00000212718.2	3113	15	0	0	0	0	multi-exon	FALSE	canonical	3	1116	junction_3	94.3690378573526	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGACTAGACATTTTAAATT	NA	False	NA	11	True	AATAAA	-16	NA	107621220	107649719	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_107621384_107624691_107624884_107625073_107625159_107627477_107627568_107630864_107631077_107632756_107632929_107633021_107633114_107634836_107634934_107637573_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107645438_107648803_107648915_107649496
transcript_92366.nnic	chr8	-	1827	2	Genic_Genomic	ENSMUSG00000074108.2	novel	645	1	NA	NA	-157002	75	multi-exon	FALSE	canonical	0	0	junction_1	0	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTGGCAGCCAGAGGCC	NA	False	NA	NA	False	AATAAA	-27	NA	107812047	107654325	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr8_-_107655094_107810988
transcript_92367.nnic	chr8	-	1864	2	Genic_Genomic	ENSMUSG00000074108.2	novel	645	1	NA	NA	-157002	75	multi-exon	FALSE	canonical	0	0	junction_1	0	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTGGCAGCCAGAGGCC	NA	False	NA	NA	False	AATAAA	-27	NA	107812047	107654325	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr8_-_107655105_107810962
transcript_92368.nnic	chr8	-	1815	2	Genic_Genomic	ENSMUSG00000074108.2	novel	645	1	NA	NA	-157003	75	multi-exon	FALSE	canonical	0	0	junction_1	0	65	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTGGCAGCCAGAGGCC	NA	False	NA	NA	False	AATAAA	-27	NA	107812048	107654325	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr8_-_107655105_107811012
transcript_92369.known	chr8	+	9945	7	FSM	ENSMUSG00000041308.7	ENSMUST00000212524.2	9945	7	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_2	15.4209453522005	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACATTGTCTCTTGTGTTTT	NA	False	NA	NA	False	AATAAA	-13	NA	107662381	107746346	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_107662954_107707757_107707972_107718027_107718239_107723697_107723841_107728141_107728339_107736412_107736598_107737923
transcript_9237.nnic	chr10	+	1293	2	Genic_Genomic	ENSMUSG00000091552.3	novel	883	1	NA	NA	-6122	291	multi-exon	FALSE	canonical	2	11	junction_1	0	72	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGTATTCTAGAGTCATAA	NA	False	NA	NA	False	AATAAA	-18	NA	100185974	100193270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr10_+_100186070_100192072
transcript_92375.known	chr8	+	2178	11	FSM	ENSMUSG00000031913.10	ENSMUST00000034388.10	2178	11	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_10	19.6532440070335	197	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTACTGGAGTCGTCTCAT	NA	False	NA	17	True	AATAAA	-17	NA	107757853	107772387	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_107758124_107763268_107763381_107763474_107763623_107765559_107765622_107765721_107765842_107767505_107767663_107768823_107768973_107769245_107769328_107769543_107769764_107771086_107771228_107771670
transcript_92380.known	chr8	-	2954	6	FSM	ENSMUSG00000031916.18	ENSMUST00000034391.4	2954	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	47.5116827738189	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAGCTTCTACTGGTAG	NA	False	NA	NA	False	NA	NA	NA	107783316	107772926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_107773904_107775414_107775763_107776773_107776943_107778844_107779673_107780653_107780862_107782892
transcript_92383.known	chr8	-	4476	5	FSM	ENSMUSG00000031916.18	ENSMUST00000095517.12	4476	5	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_4	10.356157588604	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCTACTGGTAGCCACTT	NA	False	NA	NA	False	NA	NA	NA	107783321	107772920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_107775763_107776773_107776943_107778844_107779673_107780653_107780862_107782892
transcript_92385.known	chr8	-	1306	2	FSM	ENSMUSG00000078931.5	ENSMUST00000055316.10	1306	2	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_1	0	198	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAGAAAAAAAAAGCTCA	NA	False	NA	NA	False	NA	NA	NA	107775246	107773151	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_107773904_107774692
transcript_92390.known	chr8	+	3036	5	FSM	ENSMUSG00000031917.13	ENSMUST00000034392.13	3036	5	0	0	0	0	multi-exon	FALSE	canonical	3	714	junction_4	51.2688989544344	3055	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTCTCCGTATCAACTCT	NA	False	NA	19	True	ATTAAA	-20	NA	107783508	107787563	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_107783623_107783724_107783812_107783904_107784044_107784678_107784820_107785008
transcript_92391.known	chr8	-	871	4	FSM	ENSMUSG00000031919.7	ENSMUST00000034393.7	871	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.69967317119759	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTTCTGCTGCTGATCA	NA	False	NA	NA	False	AATAAA	-20	NA	107792276	107788107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_107788457_107790308_107790458_107790705_107790833_107792030
transcript_92393.known	chr8	-	2471	7	FSM	ENSMUSG00000031921.18	ENSMUST00000116425.3	2471	7	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_6	4.88762609953839	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTTGTCCTTGCGTGATA	NA	False	NA	1	True	NA	NA	NA	107823179	107802148	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_107803632_107806000_107806102_107807724_107807872_107809614_107809702_107821453_107821585_107822560_107822657_107822753
transcript_92399.known	chr8	+	4316	5	FSM	ENSMUSG00000031924.5	ENSMUST00000034400.5	4316	5	0	0	0	0	multi-exon	FALSE	canonical	3	1441	junction_2	30.906107810593	1781	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACGGTTGCTTTTTTTTTT	NA	False	NA	17	True	AATAAA	-28	NA	107877271	107914103	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_107877506_107896442_107896572_107897022_107897053_107906045_107906075_107910209
transcript_9240.nnic	chr10	+	1273	2	Genic_Genomic	ENSMUSG00000091552.3	novel	883	1	NA	NA	-981	291	multi-exon	FALSE	canonical	1	2	junction_1	0	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGTATTCTAGAGTCATAA	NA	False	NA	NA	False	AATAAA	-18	NA	100191115	100193270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr10_+_100191191_100192072
transcript_92403.known	chr8	-	456	1	FSM	ENSMUSG00000057657.5	ENSMUST00000080443.8	456	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	54730	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTCTCTGGGCCTTTGCT	NA	False	NA	-69	True	AAGAAA	-1	NA	107989880	107989424	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_107989400_107989900
transcript_92405.known	chr8	-	1553	6	FSM	ENSMUSG00000003849.9	ENSMUST00000003947.9	1553	6	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_5	9.8264947972306	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGGTGGCGCATGCCTTT	NA	False	NA	-2	True	AATAAA	-18	NA	108129838	108114856	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_108115757_108117676_108117779_108118753_108118868_108119272_108119404_108119479_108119645_108129697
transcript_92407.known	chr8	-	1658	9	FSM	ENSMUSG00000003848.15	ENSMUST00000003946.9	1658	9	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_2	34.7902195307819	1138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTTTTTTGTTTTATTT	NA	False	NA	-3	True	AATAAA	-14	NA	108151681	108139120	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_108139816_108142737_108142883_108143625_108143724_108144687_108144859_108144945_108145075_108145331_108145404_108148113_108148245_108151369_108151503_108151597
transcript_9241.nnic	chr10	+	1283	2	Genic_Genomic	ENSMUSG00000096744.2	novel	910	1	NA	NA	-980	270	multi-exon	FALSE	canonical	3	17	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGTATTCTAGAGTCATAA	NA	False	NA	NA	False	AATAAA	-18	NA	100196219	100198379	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr10_+_100196315_100197191
transcript_92414.known	chr8	-	1427	4	FSM	ENSMUSG00000003848.15	ENSMUST00000163973.8	1427	4	0	0	0	0	multi-exon	FALSE	canonical	3	454	junction_2	16.5126214353344	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAAAAATAATAAT	NA	False	NA	NA	False	NA	NA	NA	108151683	108144326	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_108145404_108148113_108148245_108151369_108151503_108151597
transcript_92416.known	chr8	+	4314	24	FSM	ENSMUSG00000031930.12	ENSMUST00000166615.3	4314	24	0	0	0	0	multi-exon	FALSE	canonical	3	576	junction_9	55.7196601685668	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTGGTGTCAGTGTAGCT	NA	False	NA	11	True	AATAAA	-14	NA	108162996	108285227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_108163074_108179610_108179696_108184074_108184223_108184511_108184634_108209963_108210102_108212177_108212275_108232938_108233067_108244532_108244744_108259831_108259922_108267255_108267431_108272075_108272131_108275100_108275183_108275660_108275790_108276091_108276168_108276412_108276485_108276678_108276768_108278908_108279069_108280600_108280735_108281064_108281206_108281612_108281734_108282045_108282151_108283092_108283190_108283343_108283417_108283518
transcript_92419.known	chr8	+	1579	8	FSM	ENSMUSG00000031930.12	ENSMUST00000212906.2	1579	8	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_7	35.348988958783	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAGAAAAAAAATTAAAAGAA	NA	False	NA	NA	False	TATAAA	-7	NA	108163020	108245340	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_108163074_108179610_108179696_108184074_108184223_108184511_108184634_108209963_108210102_108212177_108212275_108232938_108233067_108244532
transcript_9242.known	chr10	-	5993	14	FSM	ENSMUSG00000036676.15	ENSMUST00000058154.15	5993	14	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_8	14.4496677957759	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGATTGTCTTGTGATGT	NA	False	NA	1	True	ATTAAA	-23	NA	100323212	100279763	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_100283606_100284685_100284913_100286100_100286271_100287243_100287348_100292909_100293022_100294776_100294898_100296821_100296971_100301882_100302136_100307190_100307364_100307776_100307893_100310236_100310337_100312418_100312638_100313666_100313885_100323023
transcript_92424.known	chr8	-	449	1	FSM	ENSMUSG00000059775.6	ENSMUST00000077208.6	449	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	174739	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAACTTTTTATCGCT	NA	False	NA	NA	False	AATAAA	-37	NA	108166211	108165762	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_108165800_108166200
transcript_92425.known	chr8	-	351	1	FSM	ENSMUSG00000059775.6	ENSMUST00000212102.2	351	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	235	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCCGTTTTGTAAGGACA	NA	False	NA	NA	False	NA	NA	NA	108166196	108165845	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_108165800_108166200
transcript_9243.known	chr10	+	8211	54	FSM	ENSMUSG00000019971.11	ENSMUST00000220346.2	8211	54	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	9.96476526636793	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTCATAATTGTTCAGGT	NA	False	NA	NA	False	ATTAAA	-22	NA	100323419	100409517	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_100323615_100324140_100324271_100324423_100324502_100325181_100325252_100326008_100326056_100328509_100328654_100330762_100330817_100331502_100331524_100331684_100331838_100332550_100332734_100333801_100333892_100334923_100335047_100336008_100336133_100336964_100337138_100344525_100344689_100346348_100346450_100346523_100346612_100348148_100348262_100349781_100349867_100350319_100350463_100350995_100351161_100352015_100352166_100353638_100353755_100354315_100354419_100354506_100354738_100359091_100359266_100364410_100364523_100365879_100366086_100366962_100367115_100372667_100372780_100373297_100373754_100374787_100374953_100375845_100375954_100376197_100376333_100377411_100377679_100378278_100378387_100379103_100379304_100380778_100380993_100382236_100382375_100384589_100384812_100385114_100385238_100387225_100387372_100387678_100387835_100390272_100390397_100393932_100394068_100395466_100395554_100397101_100397267_100397970_100398094_100399127_100399301_100402872_100403015_100403942_100404017_100404676_100404772_100407924_100408005_100408741
transcript_92433.known	chr8	-	860	1	FSM	ENSMUSG00000039067.6	ENSMUST00000213080.2	860	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108315090	108314230	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_108314200_108315100
transcript_92434.known	chr8	-	1581	7	FSM	ENSMUSG00000039067.6	ENSMUST00000044106.6	1581	7	0	0	0	0	multi-exon	FALSE	canonical	3	2367	junction_5	170.70409745782	16413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCTGTGTCCTAGTGGTT	NA	False	NA	-6	True	ATTAAA	-14	NA	108315096	108307012	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_108307952_108309013_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
transcript_92455.nnic	chr8	+	747	3	NIC	ENSMUSG00000097393.9	novel	3677	10	NA	NA	-10	-2389	intron_retention	FALSE	canonical	0	0	junction_1	3.5	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTGTGCTTCTTTGGTGT	NA	False	NA	NA	False	ATTAAA	-5	NA	109801843	109977882	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_109802377_109976488_109976556_109977735
transcript_92456.known	chr8	-	174	1	FSM	ENSMUSG00000110528.2	ENSMUST00000211890.2	174	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGGAACCAGTATTTGGAAG	NA	False	NA	NA	False	AAAACA	-4	NA	110067496	110067322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_110067300_110067500
transcript_92458.known	chr8	-	4463	27	FSM	ENSMUSG00000037993.9	ENSMUST00000042601.9	4463	27	0	0	0	0	multi-exon	TRUE	canonical	3	61	junction_24	17.2223966609053	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGCATTTTAAATCTCC	NA	False	NA	-2	True	AATAAA	-19	NA	110292493	110274642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_110275116_110276405_110276528_110278194_110278291_110278699_110278826_110278988_110279124_110279221_110279378_110279721_110279877_110279976_110280186_110280779_110280893_110281275_110281384_110281544_110281662_110281751_110281863_110282271_110282413_110282651_110282838_110282988_110283176_110283505_110283644_110284829_110284943_110285275_110285384_110285550_110285713_110286169_110286326_110286717_110286795_110286969_110287089_110287199_110287348_110287931_110288040_110288580_110288769_110289075_110289416_110292122
transcript_92459.known	chr8	+	1890	4	FSM	ENSMUSG00000031723.9	ENSMUST00000034159.8	1890	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	19.3045763140937	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGGTTGTCTGTCCATC	NA	False	NA	15	True	AATAAA	-24	NA	110292523	110300683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_110292696_110295521_110295730_110298002_110298155_110299325
transcript_92466.known	chr8	-	2039	9	FSM	ENSMUSG00000031730.19	ENSMUST00000123605.9	2039	9	0	0	0	0	multi-exon	FALSE	canonical	1	150	junction_2	108.396191699709	913	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTAGAATATATTGTTATT	NA	False	NA	NA	False	AATAAA	-19	NA	110335255	110320108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_110320764_110321251_110321412_110321547_110321702_110322278_110322393_110322661_110322850_110328054_110328138_110329934_110330135_110332839_110333053_110334983
transcript_92467.known	chr8	-	670	4	FSM	ENSMUSG00000031730.19	ENSMUST00000146064.8	670	4	0	0	0	0	multi-exon	FALSE	canonical	3	350	junction_3	63.378930954134	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAGACCACACAAAG	NA	False	NA	NA	False	NA	NA	NA	110335052	110327949	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_110328138_110329934_110330135_110332839_110333053_110334983
transcript_9247.known	chr10	-	2564	7	FSM	ENSMUSG00000046567.11	ENSMUST00000054471.10	2564	7	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_5	5.07991688470939	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGTGAAATAAATCCATGAA	NA	False	NA	69	True	AATAAA	-25	NA	100425257	100408126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_100409623_100411578_100411749_100413022_100413221_100414176_100414294_100419775_100419872_100422052_100422171_100424888
transcript_92471.known	chr8	-	2304	10	FSM	ENSMUSG00000031729.7	ENSMUST00000034164.6	2304	10	0	0	0	0	multi-exon	FALSE	canonical	3	462	junction_2	71.0226880807973	501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAGTGTTGGTCAAATGAG	NA	False	NA	-13	True	AATAAA	-20	NA	110419892	110397956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_110399274_110402007_110402057_110403389_110403483_110404117_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
transcript_92477.known	chr8	-	3633	9	FSM	ENSMUSG00000031729.7	ENSMUST00000212973.2	3633	9	0	0	0	0	multi-exon	FALSE	canonical	3	528	junction_2	54.85990680816	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTCTAGTGTTGGTCAAA	NA	False	NA	-17	True	AATAAA	-16	NA	110419892	110397960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_110399274_110402007_110403483_110404117_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
transcript_92479.nnic	chr8	-	2319	9	NIC	ENSMUSG00000031729.7	novel	3633	9	NA	NA	-68	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	212.348144270205	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTCTAGTGTTGGTCAAA	NA	False	NA	-17	True	AATAAA	-16	NA	110419960	110397960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_110399274_110403389_110403483_110404117_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
transcript_92485.known	chr8	-	6990	7	FSM	ENSMUSG00000031729.7	ENSMUST00000212562.2	6990	7	0	0	0	0	multi-exon	FALSE	canonical	3	544	junction_1	46.2508258184531	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTAGTGTTGGTCAAAT	NA	False	NA	-16	True	AATAAA	-17	NA	110419879	110397959	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
transcript_92488.known	chr8	-	461	4	FSM	ENSMUSG00000069895.5	ENSMUST00000212726.2	461	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	4.32049379893857	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGTGACGCTTCTGAAT	NA	False	NA	NA	False	NA	NA	NA	110464371	110460147	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_110460375_110461936_110461996_110462091_110462158_110464262
transcript_92489.known	chr8	-	7439	3	FSM	ENSMUSG00000069895.5	ENSMUST00000212605.2	7439	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	6.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTTTGCGCCTTTT	NA	False	NA	-4	True	NA	NA	NA	110464354	110453086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_110460375_110461936_110461996_110464262
transcript_92490.nic	chr8	-	438	3	ISM	ENSMUSG00000069895.5	ENSMUST00000212726.2	461	4	-10	1595	-10	-1595	5prime_fragment	FALSE	canonical	3	22	junction_2	5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCAACACCCCAGGTTCT	NA	False	NA	NA	False	NA	NA	NA	110464381	110461742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_110461996_110462091_110462158_110464262
transcript_92491.nic	chr8	-	361	2	ISM	ENSMUSG00000069895.5	ENSMUST00000212605.2	7439	3	-21	8661	-4	-1600	5prime_fragment	FALSE	canonical	3	17	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAACCAACACCCCAG	NA	False	NA	NA	False	NA	NA	NA	110464375	110461747	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_110461996_110464262
transcript_92492.known	chr8	+	6899	24	FSM	ENSMUSG00000031731.17	ENSMUST00000093157.13	6899	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	59.7914143712471	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAACTTTGCTGCCTTGC	NA	False	NA	16	True	AATAAA	-18	NA	110505185	110590836	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_110505595_110529578_110529783_110545549_110545675_110553225_110553368_110554869_110554967_110556230_110556308_110557244_110557254_110559348_110559445_110559821_110559903_110560099_110560199_110564374_110564431_110565550_110565665_110569984_110570126_110570956_110571012_110576252_110576376_110577672_110577763_110578331_110578460_110580173_110580279_110581297_110581440_110581614_110581742_110581977_110582086_110582204_110582366_110585430_110585530_110586725
transcript_92495.known	chr8	+	3692	23	FSM	ENSMUSG00000031731.17	ENSMUST00000034171.9	3692	23	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_1	23.6531408988355	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTCCCACATTGTACTTT	NA	False	NA	NA	False	AATAAA	-20	NA	110505537	110587990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_110505595_110529578_110529783_110545549_110545675_110553225_110553368_110554869_110554967_110556230_110556308_110559348_110559445_110559821_110559903_110560099_110560199_110564374_110564431_110565550_110565665_110569984_110570126_110570956_110571012_110576252_110576376_110577672_110577763_110578331_110578460_110580173_110580279_110581297_110581440_110581614_110581742_110581977_110582086_110582204_110582366_110585430_110585530_110586725
transcript_92498.known	chr8	+	466	3	FSM	ENSMUSG00000031731.17	ENSMUST00000173200.2	466	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	71.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCATAAAAAGGTTCATATC	NA	False	NA	NA	False	NA	NA	NA	110505528	110532300	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_110505595_110529578_110529783_110532104
transcript_925.known	chr1	+	6158	8	FSM	ENSMUSG00000057715.14	ENSMUST00000171690.9	6158	8	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_7	6.29868791001389	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATTAACATTATGTTA	NA	False	NA	NA	False	AATAAA	-11	NA	11484328	11672035	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_11484862_11582141_11582290_11588801_11588934_11615377_11615507_11633186_11633216_11658597_11658771_11666374_11666542_11667188
transcript_92501.nnic	chr8	+	592	3	NNC	ENSMUSG00000031732.13	novel	1323	4	NA	NA	13	-10637	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGACTGGGCATGGTGAC	NA	False	NA	NA	False	NA	NA	NA	110595186	110620966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_110595350_110603434_110603716_110620818
transcript_92502.known	chr8	-	1330	3	FSM	ENSMUSG00000001672.15	ENSMUST00000001722.14	1330	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGACCAATCAGTCTGCTG	NA	False	NA	NA	False	AGTAAA	-10	NA	110688800	110674545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_110675295_110686344_110686473_110688347
transcript_92504.known	chr8	+	1649	10	FSM	ENSMUSG00000095941.4	ENSMUST00000213641.2	1649	10	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_3	3.97523195999963	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAACTTTATGAGATATGG	NA	False	NA	-42	True	GGGGCT	-45	NA	110827838	110838593	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_110828167_110835615_110835726_110835834_110835858_110836017_110836077_110836409_110836623_110836712_110836955_110837152_110837295_110837438_110837593_110837930_110838005_110838289
transcript_92506.nic	chr8	+	1860	9	NIC	ENSMUSG00000095941.4	novel	1649	10	NA	NA	40	53	intron_retention	FALSE	canonical	3	15	junction_3	4.11551940828858	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACCGATTGTGTGTTTCAG	NA	False	NA	11	True	AATAAA	-18	NA	110827878	110838646	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_110828167_110835615_110835726_110835834_110835858_110836017_110836077_110836409_110836623_110836712_110837295_110837438_110837593_110837930_110838005_110838289
transcript_92509.known	chr8	+	1413	1	FSM	ENSMUSG00000044676.11	ENSMUST00000213084.2	1413	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAGAAAAAAAATATAG	935	False	NA	NA	False	NA	NA	NA	110806377	110807790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_110806400_110807800
transcript_92510.known	chr8	+	4863	5	FSM	ENSMUSG00000044676.11	ENSMUST00000212754.2	4863	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	6.21992765231236	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTGCTGAGACTTGCTTC	951	False	NA	NA	False	AATAAA	-16	NA	110806393	110819373	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_110806637_110809309_110809375_110810288_110810416_110810975_110811084_110815053
transcript_92513.nnic	chr8	-	1227	9	NNC	ENSMUSG00000003657.10	novel	1431	11	NA	NA	15057	0	at_least_one_novel_splicesite	FALSE	canonical	3	87	junction_8	57.2319840648566	238	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCACCCGTTTCTTGTCG	NA	False	NA	-12	True	AATAAA	-22	NA	110879781	110869169	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_110869833_110872283_110872356_110873932_110873987_110874246_110874287_110874674_110874731_110875145_110875224_110875987_110876045_110879261_110879343_110879655
transcript_92517.known	chr8	-	1431	11	FSM	ENSMUSG00000003657.10	ENSMUST00000003754.8	1431	11	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_9	44.1960405466372	870	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCACCCGTTTCTTGTCG	7616	False	NA	-12	True	AATAAA	-22	NA	110894838	110869169	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_110869833_110872283_110872356_110873932_110873987_110874246_110874287_110874674_110874731_110875145_110875224_110875987_110876045_110879261_110879343_110881284_110881375_110883551_110883629_110894675
transcript_92518.known	chr8	+	3545	2	FSM	ENSMUSG00000046441.6	ENSMUST00000056972.6	3545	2	0	0	0	0	multi-exon	TRUE	canonical	3	60	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTTGTGTTTGTTTCA	3640	False	NA	NA	False	AATAAA	-13	NA	110944620	110951118	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_110944719_110947671
transcript_92521.nic	chr8	+	1037	5	ISM	ENSMUSG00000059854.9	ENSMUST00000043141.7	15783	87	247109	84508	69597	38124	internal_fragment	FALSE	canonical	3	20	junction_2	2.48746859276655	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCATGACCTTGTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	111240717	111252377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_111240920_111241461_111241636_111245712_111245934_111249703_111249842_111252075
transcript_92524.nnic	chr8	-	709	4	Antisense	novelGene_ENSMUSG00002075592.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	73.5391052434009	136	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTGTGGATGCCACATG	9337	False	NA	-15	True	TATAAA	-14	NA	111248801	111221995	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr8_-_111222416_111227317_111227393_111227500_111227611_111248697
transcript_92529.nnic	chr8	-	662	3	Antisense	novelGene_ENSMUSG00000059854.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGAGTTTTGTCATAATTT	6945	False	NA	NA	False	NA	NA	NA	111171055	111163455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr8_-_111163780_111166697_111166844_111170863
transcript_92536.known	chr8	+	3069	19	FSM	ENSMUSG00000010936.12	ENSMUST00000034190.11	3069	19	0	0	0	0	multi-exon	FALSE	canonical	3	368	junction_15	41.1869046070606	300	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGTCTGCCTGCTCCTTC	7361	False	NA	16	True	AATAAA	-20	NA	111345230	111447030	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_111345626_111358661_111358813_111359080_111359249_111360084_111360148_111360917_111361026_111361703_111361814_111362008_111362116_111362966_111363102_111363512_111363666_111372389_111372451_111379863_111380009_111380243_111380310_111397657_111397815_111409123_111409257_111436949_111437125_111438224_111438344_111439379_111439460_111442058_111442210_111446438
transcript_9254.nic	chr10	-	651	4	ISM	ENSMUSG00000046567.11	ENSMUST00000054471.10	2564	7	123	5976	-24	112	5prime_fragment	FALSE	canonical	3	50	junction_2	5.18544972870135	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTTTAATCTAGCTCTT	NA	False	NA	NA	False	AATAAA	-22	NA	100425134	100414102	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_100414294_100419775_100419872_100422052_100422171_100424888
transcript_92542.known	chr8	-	1709	7	FSM	ENSMUSG00000031750.16	ENSMUST00000076846.11	1709	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_6	15.61694236683	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCTTGCATCTCTGATG	5030	False	NA	-23	True	ATTAAA	-16	NA	111532535	111468471	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_111469081_111469275_111469412_111474874_111475037_111475294_111475373_111476056_111476191_111481862_111482283_111532365
transcript_92548.nnic	chr8	+	880	4	Antisense	novelGene_ENSMUSG00000031750.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_2	1.24721912892465	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAAAACCTCAAATTTCAA	NA	False	NA	NA	False	NA	NA	NA	111486976	111507694	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr8_+_111487185_111495900_111496052_111506580_111506761_111507353
transcript_92552.nnic	chr8	-	501	3	NNC	ENSMUSG00000031750.16	novel	675	2	NA	NA	49	-1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	1.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGCTTGCATCTCTGAT	NA	False	NA	-24	True	ATTAAA	-15	NA	111469281	111468472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_111468637_111468828_111468965_111469080
transcript_92553.nnic	chr8	-	694	2	NNC	ENSMUSG00000031750.16	novel	1709	7	NA	NA	49	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCTTGCATCTCTGATG	NA	False	NA	-23	True	ATTAAA	-16	NA	111469281	111468471	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_111468965_111469080
transcript_92554.known	chr8	-	4525	26	FSM	ENSMUSG00000033732.11	ENSMUST00000042012.7	4525	26	0	0	0	0	multi-exon	FALSE	canonical	3	597	junction_23	101.482656646345	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGATTTTTGCCACTGTGAA	NA	False	NA	-18	True	ATTAAA	-22	NA	111573408	111536870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_111537714_111538022_111538128_111538610_111538755_111539597_111539697_111540254_111540468_111541161_111541288_111542534_111542692_111542786_111542993_111544175_111544351_111547338_111547494_111548099_111548223_111550006_111550151_111550796_111550953_111552133_111552290_111552726_111552879_111558115_111558189_111560411_111560508_111562180_111562347_111563923_111564028_111564843_111564982_111566503_111566617_111567741_111567884_111568402_111568576_111569319_111569647_111571094_111571232_111573306
transcript_92558.known	chr8	+	2442	19	FSM	ENSMUSG00000031753.17	ENSMUST00000165867.8	2442	19	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	97.5620252220714	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTCTAAGCAGTTACAG	9194	False	NA	NA	False	NA	NA	NA	111573231	111608527	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_111573445_111576499_111576583_111577967_111578083_111578917_111579093_111580301_111580496_111584568_111584675_111585168_111585327_111586517_111586577_111589882_111590017_111592608_111592728_111593192_111593360_111594833_111595000_111600777_111600841_111605637_111605755_111606264_111606358_111607226_111607311_111607506_111607609_111608002_111608132_111608362
transcript_92566.known	chr8	+	2737	19	FSM	ENSMUSG00000031753.17	ENSMUST00000034203.17	2737	19	0	0	0	0	multi-exon	FALSE	canonical	3	332	junction_8	32.668367302671	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCATTGTGTTGGGTCCAG	9628	False	NA	13	True	AATAAA	-18	NA	111573665	111608859	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_111573842_111576499_111576583_111577967_111578083_111578917_111579093_111580301_111580496_111584568_111584675_111585168_111585327_111586517_111586577_111589882_111590017_111592608_111592728_111593192_111593360_111594833_111595000_111600777_111600841_111605637_111605755_111606264_111606358_111607226_111607311_111607506_111607609_111608002_111608132_111608362
transcript_92576.known	chr8	+	2292	18	FSM	ENSMUSG00000031753.17	ENSMUST00000174398.8	2292	18	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_12	100.263183085083	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCATGTGGCCCGCCAGA	9648	False	NA	NA	False	NA	NA	NA	111573685	111608497	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_111573842_111576499_111576583_111577967_111578083_111578917_111579093_111580301_111580496_111584568_111584675_111585168_111585327_111586517_111586577_111589882_111590017_111592608_111592728_111593192_111593360_111594833_111595000_111605637_111605755_111606264_111606358_111607226_111607311_111607506_111607609_111608002_111608132_111608362
transcript_9258.known	chr10	+	3543	12	FSM	ENSMUSG00000019894.15	ENSMUST00000179636.3	3543	12	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	32.2574867983458	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGAGTTCGTGTCCCTCATT	NA	False	NA	NA	False	AATAAA	-15	NA	103203668	103255236	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_103204015_103224887_103225203_103229251_103229410_103229761_103229889_103230850_103231033_103236042_103236154_103240145_103240388_103240487_103240681_103244063_103244257_103245513_103245674_103252493_103252657_103253883
transcript_92582.nic	chr8	+	1573	11	ISM	ENSMUSG00000031753.17	ENSMUST00000174398.8	2292	18	-56	15087	-26	124	5prime_fragment	FALSE	canonical	3	332	junction_8	35.2981585921985	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGTCTTATTTGTTTC	9592	False	NA	NA	False	CATAAA	-16	NA	111573629	111593410	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_111573842_111576499_111576583_111577967_111578083_111578917_111579093_111580301_111580496_111584568_111584675_111585168_111585327_111586517_111586577_111589882_111590017_111592608_111592728_111593192
transcript_92592.known	chr8	+	577	2	FSM	ENSMUSG00000031753.17	ENSMUST00000174702.2	577	2	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGAGGGAGAGATAGAATT	9633	False	NA	NA	False	NA	NA	NA	111573670	111576905	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_111573842_111576499
transcript_92594.known	chr8	-	1409	1	FSM	ENSMUSG00000033732.11	ENSMUST00000212843.2	1409	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAAAAGGCACGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	111573359	111571950	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_111572000_111573400
transcript_92595.known	chr8	-	3838	24	FSM	ENSMUSG00000033703.10	ENSMUST00000041382.7	3838	24	0	0	0	0	multi-exon	TRUE	canonical	3	94	junction_23	12.3354193641104	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCAGAAAACTGTTTTTT	1243	False	NA	-7	True	AATAAA	-19	NA	111629091	111609094	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_111609719_111609859_111610084_111610472_111610573_111610662_111610851_111612924_111613045_111613174_111613319_111613682_111613905_111613986_111614154_111614299_111614511_111615550_111615922_111616307_111616373_111616807_111616979_111617099_111617202_111618688_111618802_111619920_111620093_111620270_111620391_111620897_111620979_111621360_111621459_111621901_111621975_111622515_111622642_111625830_111625882_111626026_111626179_111626464_111626570_111629053
transcript_926.known	chr1	+	6451	7	FSM	ENSMUSG00000057715.14	ENSMUST00000135014.8	6451	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	4.57043640026736	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGATTCCTTTACATCTTG	NA	False	NA	NA	False	ATTAAA	-17	NA	11484492	11671845	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_11484862_11582141_11582290_11588801_11588934_11615377_11615507_11633186_11633216_11658597_11658771_11666374
transcript_9260.nnic	chr10	+	3318	12	NNC	ENSMUSG00000019894.15	novel	2395	3	NA	NA	357	0	at_least_one_novel_splicesite	FALSE	canonical	2	18	junction_1	33.5120553120764	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGAGTTCGTGTCCCTCATT	NA	False	NA	NA	False	AATAAA	-15	NA	103204060	103255236	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_103204182_103224887_103225203_103229251_103229410_103229761_103229889_103230850_103231033_103236042_103236154_103240145_103240388_103240487_103240681_103244063_103244257_103245513_103245674_103252493_103252657_103253883
transcript_92601.known	chr8	-	2547	12	FSM	ENSMUSG00000015023.8	ENSMUST00000040416.8	2547	12	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_8	46.4642402265948	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATGTTTGTGTACACTT	7686	False	NA	-28	True	ATTAAA	-10	NA	111724432	111701627	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_111702723_111703060_111703253_111703599_111703763_111705099_111705338_111705667_111705846_111707184_111707300_111707622_111707726_111710212_111710306_111716105_111716242_111717108_111717160_111719688_111719738_111724298
transcript_92602.known	chr8	-	731	7	FSM	ENSMUSG00000015023.8	ENSMUST00000173183.2	731	7	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_3	37.1786228900426	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACAATGGAATGTTAAAGT	7716	False	NA	NA	False	NA	NA	NA	111724402	111707104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_111707300_111707622_111707726_111710212_111710306_111716105_111716242_111717108_111717160_111719688_111719738_111724298
transcript_92605.known	chr8	-	6612	12	FSM	ENSMUSG00000033658.17	ENSMUST00000040241.15	6612	12	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_11	90.8713558047041	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGGGTATTTTGTCTGC	NA	False	NA	-5	True	AATAAA	-17	NA	111754396	111729819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_111734944_111735281_111735474_111735812_111735976_111737352_111737591_111737916_111738095_111739385_111739501_111742196_111742300_111747260_111747354_111747591_111747728_111749032_111749087_111750597_111750647_111754229
transcript_92606.known	chr8	-	3104	12	FSM	ENSMUSG00000033658.17	ENSMUST00000065784.6	3104	12	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_11	90.7354705715175	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATACTGTGGATCAAACT	NA	False	NA	NA	False	AATAAA	-12	NA	111758383	111733290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_111734944_111735281_111735474_111735812_111735976_111737352_111737591_111737916_111738095_111739385_111739501_111742196_111742300_111747260_111747354_111747591_111747728_111749032_111749087_111750597_111750647_111758253
transcript_92613.known	chr8	+	5750	21	FSM	ENSMUSG00000031960.15	ENSMUST00000034441.8	5750	21	0	0	0	0	multi-exon	FALSE	canonical	2	1913	junction_1	386.82599124154	834	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTTGAGTCTGTGTTT	NA	False	NA	70	True	NA	NA	NA	111760533	111784296	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
transcript_92630.known	chr8	-	1067	3	FSM	ENSMUSG00000084808.8	ENSMUST00000127301.8	1067	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAAAACATCTGACCTCA	4602	False	NA	NA	False	AATAAA	-22	NA	111872091	111855517	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_111856419_111864074_111864185_111872035
transcript_92632.known	chr8	+	4938	18	FSM	ENSMUSG00000033624.11	ENSMUST00000039333.10	4938	18	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_1	8.20878085010087	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGTAGCA	NA	False	NA	NA	False	AATACA	-31	NA	111821272	111863706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_111821459_111828445_111828723_111830535_111830670_111839133_111839216_111839318_111839483_111841373_111841496_111841755_111841874_111843313_111843464_111844598_111844792_111847779_111847905_111850376_111850533_111851110_111851245_111852236_111852386_111852847_111852961_111854874_111854970_111856237_111856328_111859508_111859692_111861239
transcript_92635.known	chr8	-	4443	13	FSM	ENSMUSG00000033596.6	ENSMUST00000038739.5	4443	13	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_9	43.0880074833925	2747	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCAGTGTCTTCCGCCTG	5496	False	NA	-9	True	AATAAA	-17	NA	112026854	111997575	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_111999796_112000442_112000655_112002851_112003067_112004826_112005004_112006517_112006669_112009148_112009378_112009906_112010022_112014689_112014782_112014860_112015044_112017502_112017571_112020622_112020808_112023766_112024275_112026766
transcript_92637.known	chr8	-	5083	26	FSM	ENSMUSG00000031959.16	ENSMUST00000038193.15	5083	26	0	0	0	0	multi-exon	TRUE	canonical	3	54	junction_4	5.67718239974725	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAATCGTGTACTAACACA	NA	False	NA	-19	True	AGTAAA	-16	NA	112248724	112175428	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_112177712_112185242_112185386_112185554_112185682_112187214_112187288_112187393_112187545_112188787_112188901_112192420_112192503_112193420_112193555_112202675_112202830_112205939_112206010_112207074_112207232_112207387_112207484_112208491_112208657_112211721_112211847_112211969_112212103_112213547_112213628_112216923_112217081_112219326_112219405_112220879_112220997_112223438_112223528_112225203_112225242_112227668_112227750_112229113_112229200_112230966_112231103_112232523_112232574_112248559
transcript_92639.known	chr8	-	2273	11	FSM	ENSMUSG00000031958.17	ENSMUST00000070004.4	2273	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	5.43691088762727	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTCCCATCCCTATCCA	NA	False	NA	NA	False	AATACA	-15	NA	112357006	112352902	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_112353823_112353909_112354022_112354119_112354211_112354730_112354859_112354941_112355071_112355152_112355353_112355617_112355778_112355912_112356055_112356237_112356380_112356574_112356688_112356870
transcript_92645.known	chr8	+	4451	5	FSM	ENSMUSG00000033545.15	ENSMUST00000168428.8	4451	5	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_4	33.169074451965	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGACTGGGACCCACAAG	NA	False	NA	NA	False	NA	NA	NA	112263271	112352662	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_112264197_112335924_112336021_112345837_112345944_112348227_112348320_112349430
transcript_92647.known	chr8	+	1811	4	FSM	ENSMUSG00000055835.11	ENSMUST00000077791.8	1811	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_2	17.3076733143296	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGAGTGTTTTTGGCTTTTT	NA	False	NA	13	True	AATAGA	-20	NA	112370137	112397643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_112370245_112385017_112385074_112392709_112392837_112396122
transcript_92649.known	chr8	+	1409	4	FSM	ENSMUSG00000055835.11	ENSMUST00000211926.2	1409	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	24.1430919496424	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAATTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	112370168	112397314	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_112370245_112385017_112385074_112392751_112392837_112396122
transcript_92652.known	chr8	-	3116	7	FSM	ENSMUSG00000031955.11	ENSMUST00000212349.2	3116	7	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	13.2591687354659	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGAGCCTACAGAAATGC	NA	False	NA	-5	True	AATAAA	-14	NA	112458768	112437108	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_112438027_112439232_112439323_112439970_112441069_112441914_112442032_112442246_112442409_112447330_112447964_112458670
transcript_92654.known	chr8	-	1178	7	FSM	ENSMUSG00000031954.7	ENSMUST00000034432.7	1178	7	0	0	0	0	multi-exon	FALSE	canonical	3	1827	junction_5	79.8013157786261	11445	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGGTTGGTGAGAGTAA	NA	False	NA	-23	True	AATAAA	-15	NA	112580923	112495122	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_112495420_112505882_112506042_112557501_112557622_112566989_112567118_112568414_112568623_112571725_112571844_112580775
transcript_92655.known	chr8	-	3878	3	FSM	ENSMUSG00000031953.3	ENSMUST00000034431.3	3878	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	7	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGCGTTGGGAACCTT	NA	False	NA	-5	True	AATAAA	-14	NA	112603382	112589669	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_112593129_112596219_112596391_112603134
transcript_92656.known	chr8	-	2984	7	FSM	ENSMUSG00000031951.9	ENSMUST00000034429.9	2984	7	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_1	6.79256129077161	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTCCCTTGGCTTCTGAA	NA	False	NA	-4	True	ATTAAA	-15	NA	112660513	112638642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_112640742_112641120_112641227_112641888_112641971_112644922_112645067_112645459_112645589_112659991_112660162_112660259
transcript_92658.nic	chr8	-	735	4	ISM	ENSMUSG00000031951.9	ENSMUST00000034429.9	2984	7	64	6178	-18	-6116	5prime_fragment	FALSE	canonical	3	263	junction_3	2.62466929133727	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTACGAGTGTTCTGCCT	NA	False	NA	NA	False	AATATA	-18	NA	112660449	112644820	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_112645067_112645459_112645589_112659991_112660162_112660259
transcript_92669.known	chr8	+	1677	4	FSM	ENSMUSG00000031950.8	ENSMUST00000034428.8	1677	4	0	0	0	0	multi-exon	FALSE	canonical	3	2738	junction_1	80.3838015744189	15820	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATAAAACATGTACT	NA	False	NA	NA	False	NA	NA	NA	112667334	112680244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_112667485_112667791_112667848_112669133_112669307_112678946
transcript_92671.known	chr8	-	3159	10	FSM	ENSMUSG00000031949.18	ENSMUST00000034427.12	3159	10	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	12.5521135891752	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTAGTAACATTTTTTAAT	NA	False	NA	-10	True	ATTAAA	-5	NA	112718934	112693539	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_112695177_112698736_112698824_112704670_112704771_112705930_112706077_112708793_112709398_112713753_112713885_112714454_112714510_112716482_112716552_112716836_112717045_112718812
transcript_92676.known	chr8	-	2762	9	FSM	ENSMUSG00000031949.18	ENSMUST00000139820.8	2762	9	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_8	9.81070843517429	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTAAGGGTGACTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	112718934	112697496	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_112698824_112704670_112704771_112705930_112706077_112708793_112709398_112713753_112713885_112714454_112714510_112716482_112716552_112716836_112717045_112718812
transcript_92685.nic	chr8	-	1347	6	ISM	ENSMUSG00000031949.18	ENSMUST00000139820.8	2762	9	13	11126	13	-10438	5prime_fragment	FALSE	canonical	3	40	junction_5	11.4612390255155	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGTTCTACAGTTGAAAA	NA	False	NA	NA	False	AAAAAG	-1	NA	112718921	112708622	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_112709398_112713753_112713885_112714454_112714510_112716482_112716552_112716836_112717045_112718812
transcript_92687.nnic	chr8	-	343	2	NNC	ENSMUSG00000031949.18	novel	3159	10	NA	NA	1	-20231	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	0	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAACAGGATTCTGGGATTC	NA	False	NA	-1	True	AATAAA	-23	NA	112718933	112718415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_112718638_112718812
transcript_92689.known	chr8	-	2189	16	FSM	ENSMUSG00000031948.15	ENSMUST00000164470.3	2189	16	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_15	556.875793053432	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	False	NA	-4	True	AATAAA	-16	NA	112737898	112720074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112734838_112735019_112735113_112735172_112737841
transcript_92693.known	chr8	-	2131	15	FSM	ENSMUSG00000031948.15	ENSMUST00000093120.13	2131	15	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_14	463.92143951408	479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	False	NA	-4	True	AATAAA	-16	NA	112737898	112720074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112734838_112735019_112737841
transcript_92697.known	chr8	-	2008	14	FSM	ENSMUSG00000031948.15	ENSMUST00000034426.14	2008	14	0	0	0	0	multi-exon	FALSE	canonical	3	1149	junction_10	189.523538373557	1452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	False	NA	-4	True	AATAAA	-16	NA	112737955	112720074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112737841
transcript_92698.known	chr8	+	3560	3	FSM	ENSMUSG00000033430.11	ENSMUST00000052138.11	3560	3	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	1.5	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTACTGTCTTAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	112738029	112747160	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_112738775_112741968_112742094_112744470
transcript_92699.known	chr8	+	2139	1	FSM	ENSMUSG00000033430.11	ENSMUST00000212732.2	2139	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATCCTCGTGTCCTCATT	NA	False	NA	NA	False	NA	NA	NA	112738033	112740172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_112738000_112740200
transcript_927.known	chr1	+	5598	22	FSM	ENSMUSG00000016918.16	ENSMUST00000177608.8	5598	22	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	9.77989051592099	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTCGTTTCAGAGAAATGA	NA	False	NA	NA	False	AATAAA	-17	NA	12762500	12931416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_12762909_12798817_12798913_12856302_12856376_12856691_12856923_12866989_12867230_12875403_12875556_12878077_12878248_12887561_12887713_12888601_12888778_12890624_12890754_12891018_12891076_12892193_12892324_12906336_12906554_12908582_12908836_12910052_12910150_12910626_12910722_12911666_12911733_12912872_12913049_12918318_12918462_12918554_12918679_12920983_12921018_12929035
transcript_9270.nic	chr10	+	1626	5	ISM	ENSMUSG00000019894.15	ENSMUST00000179636.3	3543	12	-299	24005	-274	-1788	5prime_fragment	FALSE	canonical	3	31	junction_1	35.7596140918774	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTAGTATCATTTATAGT	NA	False	NA	2	True	ATTAAA	-15	NA	103203369	103231231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_103204015_103224887_103225203_103229251_103229410_103229761_103229889_103230850
transcript_92700.known	chr8	+	3470	6	FSM	ENSMUSG00000078908.11	ENSMUST00000179926.9	3470	6	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	7.91454357496375	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGAAGAGCATTCTTGTT	NA	False	NA	NA	False	AAGAAA	-21	NA	114362218	114370438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_114362341_114362743_114362902_114364372_114364718_114365166_114365987_114366318_114366467_114368561
transcript_92702.known	chr8	+	4998	5	FSM	ENSMUSG00000078908.11	ENSMUST00000035777.10	4998	5	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_3	4.52769256906871	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTCAGCCTCTTTTCTT	NA	False	NA	20	True	AATAAA	-21	NA	114362466	114371811	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_114362902_114364372_114364718_114365166_114365987_114366318_114366467_114368561
transcript_92704.known	chr8	+	966	4	FSM	ENSMUSG00000031767.14	ENSMUST00000147605.8	966	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	2.86744175568088	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGCTTGCAATATTCATCT	NA	False	NA	NA	False	NA	NA	NA	114860380	114879046	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_114860441_114863077_114863232_114874634_114874734_114878393
transcript_92705.known	chr8	+	3543	4	FSM	ENSMUSG00000031767.14	ENSMUST00000073521.12	3543	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	2.05480466765633	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGGAGGTCTGTACCTG	NA	False	NA	NA	False	NA	NA	NA	114860296	114881479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_114860441_114863077_114863232_114874634_114874794_114878393
transcript_92706.known	chr8	+	707	3	FSM	ENSMUSG00000031767.14	ENSMUST00000134593.2	707	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	1.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTTTAATGTCATTCAT	NA	False	NA	NA	False	ACTAAA	-29	NA	114860381	114875128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_114860441_114863077_114863232_114874634
transcript_92707.known	chr8	+	935	3	FSM	ENSMUSG00000031767.14	ENSMUST00000066514.13	935	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATATGGCTTGCAATATTC	NA	False	NA	NA	False	NA	NA	NA	114860313	114879042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_114860441_114874634_114874794_114878393
transcript_92709.known	chr8	+	4244	2	FSM	ENSMUSG00000046844.7	ENSMUST00000124143.2	4244	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACCTCTTATGGCATCCT	NA	False	NA	NA	False	AATAAA	-15	NA	115094855	115100810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_115096676_115098386
transcript_9271.nic	chr10	+	2449	5	ISM	ENSMUSG00000019894.15	ENSMUST00000179636.3	3543	12	-181	23064	-156	-847	5prime_fragment	FALSE	canonical	3	31	junction_1	35.7596140918774	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATTTTAATATATTTTCT	NA	False	NA	NA	False	AATAAA	-26	NA	103203487	103232172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_103204015_103224887_103225203_103229251_103229410_103229761_103229889_103230850
transcript_92710.known	chr8	+	1715	9	FSM	ENSMUSG00000004637.16	ENSMUST00000160862.8	1715	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	40.6294228361664	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	115166434	115445419	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899_115175079_115215637_115215745_115406526_115406616_115432940_115433127_115438726_115438992_115444837
transcript_92719.nnic	chr8	+	860	6	NNC	ENSMUSG00000004637.16	novel	2244	9	NA	NA	2	28305	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	49.0363130751079	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTCTTTTTTCTTACTC	NA	False	NA	NA	False	NA	NA	NA	115166436	115269333	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899_115175079_115215637_115215745_115269064
transcript_9272.nic	chr10	+	1573	5	NIC	ENSMUSG00000019894.15	novel	3543	12	NA	NA	-91	-1788	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	32.0341614530488	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTAGTATCATTTATAGT	NA	False	NA	2	True	ATTAAA	-15	NA	103203552	103231231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_+_103204015_103224757_103225203_103229251_103229410_103229761_103229889_103230850
transcript_92722.nnic	chr8	+	794	6	NNC	ENSMUSG00000004637.16	novel	2244	9	NA	NA	12	84537	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	49.0363130751079	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAAGTCATTTGCAGGTG	NA	False	NA	NA	False	AATAAA	-18	NA	115166406	115325565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899_115175079_115215637_115215745_115325392
transcript_92723.known	chr8	+	3781	5	FSM	ENSMUSG00000004637.16	ENSMUST00000160005.2	3781	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	47.8663503935698	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTAGGTGGCTTTTGGG	NA	False	NA	6	True	AATAAA	-6	NA	115166441	115180558	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899_115175079_115177256
transcript_92725.known	chr8	+	2383	5	FSM	ENSMUSG00000004637.16	ENSMUST00000109107.3	2383	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	54.7830950202706	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACATCGGGATACCTGCTC	NA	False	NA	NA	False	AATAAA	-17	NA	115166441	115201269	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899_115175079_115199365
transcript_92726.nic	chr8	+	946	5	ISM	ENSMUSG00000004637.16	ENSMUST00000160862.8	1715	9	-230	229552	-190	14598	5prime_fragment	FALSE	canonical	3	90	junction_4	16.0058583025091	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATCTTCACGCTGTTTAC	NA	False	NA	NA	False	NA	NA	NA	115166204	115215867	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899_115175079_115215637
transcript_92727.nic	chr8	+	702	4	ISM	ENSMUSG00000004637.16	ENSMUST00000160005.2	3781	5	-52	5309	-5	-5309	5prime_fragment	FALSE	canonical	3	123	junction_1	3.39934634239519	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAGTGTTACAGTGTGAG	NA	False	NA	NA	False	ATTAAA	-18	NA	115166389	115175249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899
transcript_92728.known	chr8	+	2244	9	FSM	ENSMUSG00000004637.16	ENSMUST00000004756.14	2244	9	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_8	27.9013328534678	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTGTCTGAAGTGTAT	NA	False	NA	12	True	AATAAA	-15	NA	115166394	116079447	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899_115175079_115215637_115215745_115406526_115406616_115432940_115433127_115438726_115438992_116078376
transcript_92729.known	chr8	+	1771	9	FSM	ENSMUSG00000004637.16	ENSMUST00000109108.9	1771	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	40.6294228361664	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGAAAGGAAAGTGGGTGA	NA	False	NA	NA	False	AATAAA	-19	NA	115166434	115601978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899_115175079_115215637_115215745_115406526_115406616_115432940_115433127_115438726_115438992_115601340
transcript_9273.nic	chr10	+	2514	5	NIC	ENSMUSG00000019894.15	novel	3543	12	NA	NA	-91	-847	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	32.0341614530488	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATTTTAATATATTTTCT	NA	False	NA	NA	False	AATAAA	-26	NA	103203552	103232172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_+_103204015_103224757_103225203_103229251_103229410_103229761_103229889_103230850
transcript_92730.known	chr8	-	437	1	FSM	ENSMUSG00000110620.2	ENSMUST00000212988.2	437	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCATCCAAATGTGAGG	9347	False	NA	NA	False	NA	NA	NA	116698810	116698373	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_116698400_116698800
transcript_92733.nnic	chr8	-	2308	7	NNC	ENSMUSG00000031758.11	novel	2411	7	NA	NA	59780	0	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_6	23.3571307218065	135	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTACTAGGAAATTTTTTTC	NA	False	NA	65	True	NA	NA	NA	117399950	117301138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_117302027_117305906_117306051_117309745_117309957_117315988_117316162_117321700_117321919_117350522_117351106_117399859
transcript_92734.known	chr8	-	2411	7	FSM	ENSMUSG00000031758.11	ENSMUST00000109102.4	2411	7	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_6	26.9670580935745	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTACTAGGAAATTTTTTTC	1769	False	NA	65	True	NA	NA	NA	117459730	117301138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_117302027_117305906_117306051_117309745_117309957_117315988_117316162_117321700_117321919_117350522_117351106_117459536
transcript_92737.nnic	chr8	-	2220	7	NNC	ENSMUSG00000031758.11	novel	2411	7	NA	NA	59780	-88	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_6	23.3571307218065	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTGTAAGTGGAAATTCTGA	NA	False	NA	-23	True	AATATA	-15	NA	117399950	117301226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_117302027_117305906_117306051_117309745_117309957_117315988_117316162_117321700_117321919_117350522_117351106_117399859
transcript_9274.nnic	chr10	+	1245	5	NNC	ENSMUSG00000019894.15	novel	2395	3	NA	NA	344	-1788	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	44.144648599802	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTAGTATCATTTATAGT	NA	False	NA	2	True	ATTAAA	-15	NA	103204047	103231231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_103204182_103224757_103225203_103229251_103229410_103229761_103229889_103230850
transcript_9275.nnic	chr10	+	2186	5	NNC	ENSMUSG00000019894.15	novel	2395	3	NA	NA	344	-847	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	44.144648599802	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATTTTAATATATTTTCT	NA	False	NA	NA	False	AATAAA	-26	NA	103204047	103232172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_103204182_103224757_103225203_103229251_103229410_103229761_103229889_103230850
transcript_92750.known	chr8	-	413	3	FSM	ENSMUSG00000014633.16	ENSMUST00000134356.2	413	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	154	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACGCGCTGTGCCAGGGAG	NA	False	NA	-102	True	NA	NA	NA	117648185	117616353	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_117616599_117620826_117620899_117648089
transcript_92751.known	chr8	-	1459	4	FSM	ENSMUSG00000014633.16	ENSMUST00000148235.8	1459	4	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_2	17.3076733143296	1484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGTTTGCAGAGTGGCTT	NA	False	NA	NA	False	AATAAA	-32	NA	117648194	117615423	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_117616599_117620826_117620899_117637866_117637974_117648089
transcript_92752.known	chr8	-	876	4	FSM	ENSMUSG00000014633.16	ENSMUST00000131616.8	876	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	157.584545209512	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TGAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	117648161	117616017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_117616599_117620826_117620899_117637822_117637974_117648089
transcript_92753.known	chr8	-	523	3	FSM	ENSMUSG00000014633.16	ENSMUST00000078589.7	523	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	157.5	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCACTGGACAGCGTGGGC	NA	False	NA	-20	True	NA	NA	NA	117648178	117616271	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_117616599_117637866_117637974_117648089
transcript_92754.known	chr8	-	793	5	FSM	ENSMUSG00000014633.16	ENSMUST00000150128.8	793	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	168.345440983711	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCCTCCCTTTCTTTAAC	NA	False	NA	-5	True	AATAAA	-15	NA	117648186	117616256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_117616599_117620826_117620899_117623078_117623254_117637866_117637974_117648089
transcript_9276.nnic	chr10	+	1102	5	NNC	ENSMUSG00000019894.15	novel	2395	3	NA	NA	357	-1788	at_least_one_novel_splicesite	FALSE	canonical	2	18	junction_1	41.1969355656461	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTAGTATCATTTATAGT	NA	False	NA	2	True	ATTAAA	-15	NA	103204060	103231231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_103204182_103224887_103225203_103229251_103229410_103229761_103229889_103230850
transcript_92760.known	chr8	+	1768	12	FSM	ENSMUSG00000031756.6	ENSMUST00000034205.5	1768	12	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_1	41.3065540194129	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATCAGTTCCTTTGGATG	NA	False	NA	8	True	AATAAA	-16	NA	117648478	117668242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_117648523_117649066_117649181_117652820_117653002_117655274_117655321_117657816_117657877_117658332_117658410_117660025_117660203_117661433_117661536_117662932_117662991_117663900_117664014_117667182_117667310_117667573
transcript_9277.nnic	chr10	+	2043	5	NNC	ENSMUSG00000019894.15	novel	2395	3	NA	NA	357	-847	at_least_one_novel_splicesite	FALSE	canonical	2	18	junction_1	41.1969355656461	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATTTTAATATATTTTCT	NA	False	NA	NA	False	AATAAA	-26	NA	103204060	103232172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_103204182_103224887_103225203_103229251_103229410_103229761_103229889_103230850
transcript_92773.known	chr8	+	447	2	FSM	ENSMUSG00000031756.6	ENSMUST00000212578.2	447	2	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCCCCAGCCCTGGCAGCC	NA	False	NA	NA	False	NA	NA	NA	117648468	117649459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_117648523_117649066
transcript_92775.known	chr8	-	1482	3	FSM	ENSMUSG00000031847.9	ENSMUST00000213068.2	1482	3	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGCCTGAAACTCATTT	8525	False	NA	NA	False	AATATA	-16	NA	117705698	117697846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_117698896_117700190_117700439_117705513
transcript_92776.known	chr8	-	2976	3	FSM	ENSMUSG00000031847.9	ENSMUST00000070577.7	2976	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	2	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCTCTCTCACTGTTTCT	8541	False	NA	NA	False	AATAAA	-28	NA	117705682	117696332	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_117698896_117700190_117700439_117705517
transcript_92786.nnic	chr8	-	1211	4	NIC	ENSMUSG00000034424.6	novel	1443	5	NA	NA	-10	-162	combination_of_known_splicesites	FALSE	canonical	3	83	junction_3	974.020647739165	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGATTGTGATTTTTATTT	NA	False	NA	-9	True	AATAAA	-16	NA	117720286	117708710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_117709466_117710546_117710679_117714051_117714116_117720026
transcript_92787.known	chr8	-	1443	5	FSM	ENSMUSG00000034424.6	ENSMUST00000040484.6	1443	5	0	0	0	0	multi-exon	FALSE	canonical	3	1952	junction_3	87.9982244139051	4582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTGGTGTGGTGGTGCA	NA	False	NA	NA	False	NA	NA	NA	117720276	117708548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_117709466_117710546_117710679_117714051_117714116_117715862_117715943_117720026
transcript_92796.nic	chr8	-	1080	5	ISM	ENSMUSG00000034416.19	ENSMUST00000109093.9	7389	43	72619	-212	14265	212	3prime_fragment	FALSE	canonical	3	6	junction_4	3.60555127546399	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTCTCTACGGAACAATTA	NA	False	NA	NA	False	AATAAA	-12	NA	117736569	117722205	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_117722580_117724274_117724407_117724814_117724917_117726511_117726723_117736308
transcript_9280.known	chr10	+	1246	2	FSM	ENSMUSG00000091779.9	ENSMUST00000181634.8	1246	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	103978847	103981317	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_103978954_103980177
transcript_92804.nic	chr8	-	1309	5	ISM	ENSMUSG00000034416.19	ENSMUST00000162080.2	1716	8	6967	0	6967	0	3prime_fragment	FALSE	canonical	3	20	junction_4	5.53962995154008	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTGGCATGTTCTTATTT	4390	False	NA	NA	False	TATAAA	-19	NA	117743867	117736061	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_117736470_117738236_117738365_117740602_117740737_117741601_117741930_117743556
transcript_9281.known	chr10	+	1185	2	FSM	ENSMUSG00000091779.9	ENSMUST00000180664.2	1185	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	103979262	103981317	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_103979308_103980177
transcript_92813.nnic	chr8	-	1177	4	NIC	ENSMUSG00000034416.19	novel	1716	8	NA	NA	6967	-4	combination_of_known_splicesites	FALSE	canonical	3	10	junction_1	9.84321537348893	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATTGTGGCATGTTCTT	4390	False	NA	NA	False	TATAAA	-15	NA	117743867	117736065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_117736470_117740602_117740737_117741601_117741930_117743556
transcript_92818.known	chr8	-	1107	2	FSM	ENSMUSG00000034416.19	ENSMUST00000160449.2	1107	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAACCCAAAGAGTGTTTT	NA	False	NA	NA	False	AATATA	-12	NA	117755582	117750288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_117750831_117755017
transcript_92820.known	chr8	+	4298	33	FSM	ENSMUSG00000034330.11	ENSMUST00000081232.9	4298	33	0	0	0	0	multi-exon	TRUE	canonical	3	77	junction_7	32.3080872228611	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTTCTGTACCTGATCTGT	NA	False	NA	11	True	AATAAA	-23	NA	118225029	118361881	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_118225169_118230873_118231113_118282713_118282858_118284041_118284136_118284807_118284856_118293540_118293626_118294902_118294987_118300079_118300124_118300655_118300729_118304561_118304664_118306514_118306634_118308395_118308482_118310221_118310343_118311902_118312072_118313199_118313305_118316002_118316093_118316581_118316758_118316857_118317059_118319364_118319485_118323000_118323182_118325160_118325233_118327866_118327977_118330560_118330658_118331929_118331997_118333809_118333968_118335876_118335980_118337471_118337682_118339642_118339789_118340906_118341022_118341953_118342122_118347913_118348003_118361012_118361198_118361523
transcript_92825.nic	chr8	+	1909	12	ISM	ENSMUSG00000034330.11	ENSMUST00000081232.9	4298	33	102734	0	102734	0	3prime_fragment	FALSE	canonical	3	117	junction_1	25.4749917882532	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTTCTGTACCTGATCTGT	NA	False	NA	11	True	AATAAA	-23	NA	118327763	118361881	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_118327977_118330560_118330658_118331929_118331997_118333809_118333968_118335876_118335980_118337471_118337682_118339642_118339789_118340906_118341022_118341953_118342122_118347913_118348003_118361012_118361198_118361523
transcript_92829.nnic	chr8	+	626	3	Intergenic	novelGene_121	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCCACAGTGACACACTTC	4763	False	NA	NA	False	NA	NA	NA	118359011	118384292	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr8_+_118359357_118380924_118381030_118384116
transcript_9283.known	chr10	+	1246	2	FSM	ENSMUSG00000097427.6	ENSMUST00000181287.5	1246	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	103987357	103989826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_103987464_103988686
transcript_92830.known	chr8	-	2615	3	FSM	ENSMUSG00000034308.14	ENSMUST00000173522.8	2615	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATTGGGTTAAATATTCA	NA	False	NA	0	True	AATAAA	-17	NA	118400428	118388140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_118390572_118391725_118391820_118400338
transcript_92832.known	chr8	+	1320	5	FSM	ENSMUSG00000031844.9	ENSMUST00000034304.9	1320	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	2.69258240356725	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTCTTATTTTGAAATGT	NA	False	NA	NA	False	ATTAAA	-16	NA	118428642	118485766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_118429003_118461232_118461446_118469070_118469257_118479924_118480063_118485343
transcript_92838.known	chr8	-	1068	5	FSM	ENSMUSG00000031843.3	ENSMUST00000034303.3	1068	5	0	0	0	0	multi-exon	FALSE	canonical	3	669	junction_1	47.4572175754121	5587	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTTTGAAGTAATTTTAG	NA	False	NA	-12	True	AATAAA	-22	NA	118528682	118518383	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_118519058_118519417_118519516_118521319_118521411_118525782_118525896_118528590
transcript_9284.known	chr10	+	509	2	FSM	ENSMUSG00000097427.6	ENSMUST00000180692.3	509	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGCGCCCCTTTGGATGG	NA	False	NA	NA	False	NA	NA	NA	103987772	103989150	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_103987818_103988686
transcript_92842.known	chr8	+	1208	4	FSM	ENSMUSG00000031839.8	ENSMUST00000034300.8	1208	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	885.438121308692	6446	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGAAGAATGGTGTGGTC	NA	False	NA	NA	False	AATAAA	-18	NA	120071226	120075661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_120071360_120071674_120071742_120072351_120072473_120074774
transcript_92843.known	chr8	+	1976	13	FSM	ENSMUSG00000031837.15	ENSMUST00000098363.10	1976	13	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_3	4.71625439894367	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCGTGTCTCTGTCCCTTT	NA	False	NA	11	True	AATAAA	-19	NA	120173457	120199379	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_120174004_120176820_120176846_120178820_120178930_120180939_120180966_120181097_120181196_120189299_120189437_120191640_120191760_120191891_120191972_120194329_120194384_120195007_120195121_120197646_120197725_120198478_120198571_120198880
transcript_92844.nic	chr8	+	1297	9	ISM	ENSMUSG00000031837.15	ENSMUST00000098363.10	1976	13	7613	0	1900	0	3prime_fragment	FALSE	canonical	3	52	junction_2	2.75850956133924	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCGTGTCTCTGTCCCTTT	NA	False	NA	11	True	AATAAA	-19	NA	120181070	120199379	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_120181196_120189299_120189437_120191640_120191760_120191891_120191972_120194329_120194384_120195007_120195121_120197646_120197725_120198478_120198571_120198880
transcript_92846.known	chr8	-	4195	23	FSM	ENSMUSG00000031835.17	ENSMUST00000081381.6	4195	23	0	0	0	0	multi-exon	FALSE	canonical	3	394	junction_22	51.0282088571954	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAGCTGGCATGTGTCGT	8141	False	NA	-7	True	AATAAA	-14	NA	120285474	120234894	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260212_120262013_120262117_120264865_120264934_120265582_120265700_120268323_120268434_120268813_120268925_120269463_120269668_120272722_120272981_120274138_120274625_120285384
transcript_92848.nic	chr8	-	1274	5	NIC	ENSMUSG00000031835.17	novel	6789	22	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_4	223.278273685551	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAGCTGGCATGTGTCGT	NA	False	NA	-7	True	AATAAA	-14	NA	120242610	120234894	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120242546
transcript_92849.nic	chr8	-	917	2	ISM	ENSMUSG00000031835.17	ENSMUST00000212685.2	6624	22	-29	38932	-29	1	5prime_fragment	FALSE	canonical	3	394	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTTTCCCTATTGGGAA	8112	False	NA	NA	False	AATAAA	-18	NA	120285503	120273826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_120274625_120285384
transcript_9285.known	chr10	+	1246	2	FSM	ENSMUSG00000097878.6	ENSMUST00000181179.5	1246	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	103995866	103998334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_103995973_103997194
transcript_92851.known	chr8	-	849	2	FSM	ENSMUSG00000031835.17	ENSMUST00000212813.2	849	2	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCCTTTCCCTATTGGGA	8435	False	NA	NA	False	AATAAA	-17	NA	120285180	120273827	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_120274625_120285128
transcript_92853.known	chr8	-	3141	5	FSM	ENSMUSG00000034189.6	ENSMUST00000036049.6	3141	5	0	0	0	0	multi-exon	TRUE	canonical	3	107	junction_4	18.9274932307477	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTCCCGCCACCAGAGGGT	NA	False	NA	-10	True	AATAAA	-19	NA	120301922	120288727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_120290877_120292382_120292611_120292767_120293214_120294504_120294731_120301830
transcript_92855.known	chr8	-	3236	15	FSM	ENSMUSG00000031832.16	ENSMUST00000093099.13	3236	15	0	0	0	0	multi-exon	FALSE	canonical	1	17	junction_9	12.1866856085832	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGGTGTGTAAAGCCCAC	1064	False	NA	-2	True	NA	NA	NA	120331961	120324713	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_120326243_120326319_120326458_120326554_120326730_120327172_120327311_120327399_120327536_120327689_120327762_120327849_120327968_120328054_120328172_120328280_120328520_120329569_120329644_120329728_120329819_120329888_120329987_120330119_120330205_120330978_120331118_120331873
transcript_92857.nic	chr8	-	1303	6	ISM	ENSMUSG00000031832.16	ENSMUST00000093099.13	3236	15	-19	4146	-19	-2493	5prime_fragment	FALSE	canonical	3	55	junction_3	5.2	16146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAACCT	1045	False	NA	NA	False	AATAAA	-24	NA	120331980	120328859	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_120329644_120329728_120329819_120329888_120329987_120330119_120330205_120330978_120331118_120331873
transcript_92859.nic	chr8	-	1373	5	NIC	ENSMUSG00000031832.16	novel	3309	15	NA	NA	-19	-2493	intron_retention	FALSE	canonical	3	55	junction_2	5.76085931090146	16118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAACCT	1045	False	NA	NA	False	AATAAA	-24	NA	120331980	120328859	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_120329644_120329728_120329987_120330119_120330205_120330978_120331118_120331873
transcript_9286.known	chr10	+	509	2	FSM	ENSMUSG00000097878.6	ENSMUST00000181166.3	509	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGCGCCCCTTTGGATGG	NA	False	NA	NA	False	NA	NA	NA	103996281	103997658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_103996327_103997194
transcript_92860.nic	chr8	-	1469	4	NIC	ENSMUSG00000031832.16	novel	3309	15	NA	NA	-19	-2482	intron_retention	FALSE	canonical	3	55	junction_1	6.16441400296898	17389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAACCTTAGGCGTGGCT	1045	False	NA	NA	False	AATAAA	-35	NA	120331980	120328848	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_120329987_120330119_120330205_120330978_120331118_120331873
transcript_92863.known	chr8	-	456	1	FSM	ENSMUSG00000081378.2	ENSMUST00000117927.2	456	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	569	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCTGTTGTGTGCACAAGC	3661	False	NA	NA	False	NA	NA	NA	120329364	120328908	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_120328900_120329400
transcript_92868.known	chr8	+	1926	10	FSM	ENSMUSG00000024266.9	ENSMUST00000098361.4	1926	10	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_8	9.71571210608852	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGGTCTGCGTGTTGGGA	4281	False	NA	7	True	AATAAA	-12	NA	120339485	120343663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_120339872_120340833_120340975_120341482_120341531_120341641_120341768_120341850_120342002_120342078_120342247_120342349_120342580_120342671_120342916_120343147_120343269_120343352
transcript_9287.known	chr10	+	1246	2	FSM	ENSMUSG00000097550.8	ENSMUST00000181059.8	1246	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	104004375	104006844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_104004482_104005704
transcript_92871.known	chr8	-	3085	8	FSM	ENSMUSG00000034105.10	ENSMUST00000049156.7	3085	8	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_5	4.74664220738176	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTGGTAGCAGGCTTGG	NA	False	NA	NA	False	AATAAA	-20	NA	120505155	120486814	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_120488570_120489030_120489211_120490674_120490794_120494804_120495234_120497979_120498125_120499112_120499344_120500010_120500180_120505098
transcript_92875.known	chr8	-	1596	4	FSM	ENSMUSG00000031827.14	ENSMUST00000034285.14	1596	4	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_1	12.9185482500507	1184	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGAGTTGGGTTGTCT	NA	False	NA	NA	False	AGTAAA	-14	NA	120567283	120535960	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_120537095_120549392_120549551_120566880_120566964_120567062
transcript_92879.nnic	chr8	+	1126	4	NIC	ENSMUSG00000031828.10	novel	2181	5	NA	NA	-10	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	7.03957069398096	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTTGTTTGAATACTTACA	NA	False	NA	NA	False	ATTAAA	-24	NA	120588994	120603734	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_120589187_120591741_120591819_120601113_120601272_120603035
transcript_9288.known	chr10	+	1185	2	FSM	ENSMUSG00000097550.8	ENSMUST00000180568.2	1185	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	104004790	104006844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_104004836_104005704
transcript_92880.known	chr8	+	1354	3	FSM	ENSMUSG00000031828.10	ENSMUST00000212636.2	1354	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	1	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTCTTGAGGCCTCTTTG	NA	False	NA	NA	False	ATTAAA	-14	NA	120589004	120597455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_120589187_120591741_120591819_120596360
transcript_92885.known	chr8	+	3726	14	FSM	ENSMUSG00000031826.21	ENSMUST00000144458.8	3726	14	0	0	0	0	multi-exon	FALSE	canonical	3	816	junction_3	215.032734538435	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAAGCTGTGTTTCTTGGT	8373	False	NA	34	True	AATAAA	-16	NA	120637098	120684294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_120637679_120658587_120658657_120663269_120663328_120667848_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
transcript_92886.known	chr8	+	3274	14	FSM	ENSMUSG00000031826.21	ENSMUST00000108988.9	3274	14	0	0	0	0	multi-exon	FALSE	canonical	3	740	junction_3	231.479471146212	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	8827	False	NA	39	True	AATAAA	-21	NA	120637552	120684299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_120637679_120658587_120658657_120663269_120663328_120667851_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
transcript_9289.known	chr10	+	1246	2	FSM	ENSMUSG00000094144.9	ENSMUST00000180889.8	1246	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	104012884	104015352	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_104012991_104014212
transcript_92894.known	chr8	+	2898	15	FSM	ENSMUSG00000031825.17	ENSMUST00000034282.16	2898	15	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	1.54523626091314	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120719246	120778315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_120719340_120737172_120737491_120740748_120740868_120742012_120742146_120742404_120742521_120745591_120745693_120750303_120750442_120752800_120752862_120755535_120755603_120756004_120756136_120757123_120757168_120757806_120757880_120760298_120760375_120766764_120766899_120777021
transcript_92895.known	chr8	+	4182	15	FSM	ENSMUSG00000031825.17	ENSMUST00000132583.8	4182	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	1.49318178288335	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGGTAGCACATCTTTTC	NA	False	NA	NA	False	AATAAA	-22	NA	120719176	120779532	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_120719340_120737172_120737491_120740748_120740868_120742012_120742146_120742404_120742521_120745591_120745693_120750306_120750442_120752800_120752862_120755535_120755603_120756004_120756136_120757123_120757168_120757806_120757880_120760298_120760375_120766764_120766899_120777021
transcript_92896.known	chr8	-	1187	9	FSM	ENSMUSG00000042269.16	ENSMUST00000048786.13	1187	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.433012701892219	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCATGCTTTGTCTGTTTTC	NA	False	NA	NA	False	AGTAAA	-23	NA	120904205	120893135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_120893437_120894042_120894145_120895249_120895364_120896443_120896549_120898478_120898485_120898626_120898729_120898814_120898884_120901448_120901684_120904052
transcript_92897.known	chr8	+	7127	16	FSM	ENSMUSG00000031822.21	ENSMUST00000034279.16	7127	16	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	28.9916463064027	4335	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATCTTTTTGTATCACCA	NA	False	NA	21	True	AATAAA	-28	NA	121215185	121308129	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_121215891_121280322_121280542_121289364_121289565_121293106_121293280_121293665_121293864_121294501_121294694_121294899_121295223_121295790_121296116_121297455_121298079_121299042_121299156_121299374_121299646_121300909_121301018_121301672_121302045_121303014_121303294_121304709_121304814_121305207
transcript_9290.known	chr10	+	1185	2	FSM	ENSMUSG00000094144.9	ENSMUST00000181239.2	1185	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	104013299	104015352	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_104013345_104014212
transcript_92902.known	chr8	-	511	3	FSM	ENSMUSG00000031821.12	ENSMUST00000155609.2	511	3	0	0	0	0	multi-exon	FALSE	canonical	3	1093	junction_2	37	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCCAGCCTTTCTCTTCCA	NA	False	NA	NA	False	NA	NA	NA	121312947	121308282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_121308551_121308820_121308948_121312831
transcript_92920.known	chr8	+	765	5	FSM	ENSMUSG00000031818.13	ENSMUST00000181586.8	765	5	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_1	3735.25865904893	5975	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTGGTTCATTCTT	NA	False	NA	28	True	AATAAA	-17	NA	121394960	121400946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_121395115_121396047_121396122_121399463_121399632_121399959_121400092_121400709
transcript_9293.known	chr10	+	1246	2	FSM	ENSMUSG00000095022.9	ENSMUST00000181703.8	1246	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	104021393	104023861	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_104021500_104022721
transcript_92934.known	chr8	-	844	4	FSM	ENSMUSG00000043687.17	ENSMUST00000123927.9	844	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_3	5.09901951359278	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCGGGTCCTGGTTTTTG	NA	False	NA	-1	True	AATAAA	-13	NA	121361231	121335340	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_121335770_121337932_121338077_121355210_121355257_121361006
transcript_92935.known	chr8	-	758	4	FSM	ENSMUSG00000097919.2	ENSMUST00000181333.2	758	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	27.6043474836845	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCCCGGCTTGGTGAAGA	NA	False	NA	NA	False	NA	NA	NA	121394818	121335524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_121335770_121337932_121338077_121355210_121355257_121394495
transcript_9294.known	chr10	+	1185	2	FSM	ENSMUSG00000095022.9	ENSMUST00000181707.2	1185	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	104021808	104023861	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_104021854_104022721
transcript_92940.known	chr8	+	745	5	FSM	ENSMUSG00000031818.13	ENSMUST00000034276.13	745	5	0	0	0	0	multi-exon	FALSE	canonical	3	8115	junction_1	456.952609687263	95402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTGGTTCATTCTT	NA	False	NA	28	True	AATAAA	-17	NA	121394960	121400946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_121395095_121396047_121396122_121399463_121399632_121399959_121400092_121400709
transcript_92941.known	chr8	-	4942	5	FSM	ENSMUSG00000031819.14	ENSMUST00000034277.14	4942	5	0	0	0	0	multi-exon	FALSE	canonical	3	1135	junction_3	55.4301362076623	1767	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCCTCTCTGTGTTCATC	NA	False	NA	0	True	AATAAA	-23	NA	121394860	121380652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_121384988_121385266_121385362_121385743_121385814_121387522_121387600_121394495
transcript_92942.known	chr8	-	747	2	FSM	ENSMUSG00000031819.14	ENSMUST00000181950.2	747	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1598	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGTGTACACGGTGTACC	NA	False	NA	-22	True	ATTAAA	-29	NA	121394826	121384571	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_121384988_121394495
transcript_92943.known	chr8	+	608	2	FSM	ENSMUSG00000031818.13	ENSMUST00000180856.2	608	2	0	0	0	0	multi-exon	FALSE	canonical	3	8115	junction_1	0	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGCTGGGATTTGAACTC	NA	False	NA	NA	False	NA	NA	NA	121394999	121396560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_121395095_121396047
transcript_92944.known	chr8	+	438	2	FSM	ENSMUSG00000031818.13	ENSMUST00000181026.2	438	2	0	0	0	0	multi-exon	FALSE	canonical	3	9369	junction_1	0	2322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTGGTTCATTCTT	NA	False	NA	28	True	AATAAA	-17	NA	121399890	121400946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_121400092_121400709
transcript_92945.known	chr8	+	2847	9	FSM	ENSMUSG00000041515.11	ENSMUST00000047737.10	2847	9	0	0	0	0	multi-exon	TRUE	canonical	3	23	junction_1	7.56637297521078	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAATGTTTGTTTCTTTTTT	NA	False	NA	18	True	ATTAAA	-22	NA	121463096	121483433	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_121463149_121466555_121466731_121470444_121470629_121472358_121472448_121473941_121474048_121475037_121475086_121480091_121480473_121481126_121481243_121481737
transcript_92948.nnic	chr8	+	1193	7	NNC	ENSMUSG00000041515.11	novel	764	4	NA	NA	-684	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	15.0489940601431	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTAATGGCTGGCCTTTC	NA	False	NA	NA	False	ATTAAA	-29	NA	121471534	121482143	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_121471582_121472358_121472448_121473941_121474048_121475037_121475086_121480091_121480473_121481126_121481243_121481737
transcript_92955.known	chr8	-	1366	10	FSM	ENSMUSG00000031816.16	ENSMUST00000139782.8	1366	10	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_9	24.8282992660481	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTGCTTGTATGTTTGTG	NA	False	NA	-11	True	NA	NA	NA	121835049	121824295	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_121824665_121825446_121825511_121825737_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832312_121832427_121833608_121833713_121834932
transcript_92956.known	chr8	-	1060	10	FSM	ENSMUSG00000031816.16	ENSMUST00000133037.8	1060	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	18.6494629717802	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGACGCAGGCTCAGGCTGT	NA	False	NA	NA	False	NA	NA	NA	121835131	121824589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_121824665_121825446_121825511_121825737_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832312_121832427_121833608_121833713_121835026
transcript_9296.known	chr10	+	1258	2	FSM	ENSMUSG00000090854.10	ENSMUST00000181615.8	1258	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	104029902	104032383	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_104030009_104031231
transcript_92965.nic	chr8	-	1597	9	NIC	ENSMUSG00000031816.16	novel	1366	10	NA	NA	-16	0	intron_retention	FALSE	canonical	3	48	junction_6	14.260412862186	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTGCTTGTATGTTTGTG	NA	False	NA	-11	True	NA	NA	NA	121835147	121824295	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_121824665_121825446_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832312_121832427_121833608_121833713_121835026
transcript_92966.known	chr8	-	1520	9	FSM	ENSMUSG00000031816.16	ENSMUST00000116415.9	1520	9	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_6	25.939533052852	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTGTATGTTTGTGTAAA	NA	False	NA	-7	True	NA	NA	NA	121835066	121824291	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_121824665_121825446_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832456_121832571_121833608_121833713_121835026
transcript_9297.known	chr10	+	1197	2	FSM	ENSMUSG00000090854.10	ENSMUST00000181036.2	1197	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	104030317	104032383	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_104030363_104031231
transcript_92971.known	chr8	-	2415	8	FSM	ENSMUSG00000031816.16	ENSMUST00000128052.8	2415	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_7	31.0733168555943	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTTGTATGTTTGTGTA	NA	False	NA	-9	True	NA	NA	NA	121835034	121824293	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831298_121832312_121832427_121833608_121833713_121834932
transcript_92979.nic	chr8	-	803	5	NIC	ENSMUSG00000031816.16	novel	559	3	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_4	29.0301567339896	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCTGCGGCTTACAAAAA	NA	False	NA	NA	False	AATAAA	-30	NA	121835074	121830590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_121830920_121831130_121831245_121832312_121832427_121833608_121833713_121834932
transcript_92980.nic	chr8	-	782	5	NIC	ENSMUSG00000031816.16	novel	358	4	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	27.9776696670756	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCTGCGGCTTACAAAAA	NA	False	NA	NA	False	AATAAA	-30	NA	121835147	121830590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_121830920_121831130_121831245_121832312_121832427_121833608_121833713_121835026
transcript_92981.nic	chr8	-	782	5	NIC	ENSMUSG00000031816.16	novel	488	5	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	2	11	junction_2	30.0083321762473	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCTGCGGCTTACAAAAA	NA	False	NA	NA	False	AATAAA	-30	NA	121835147	121830590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_121830920_121831130_121831245_121832456_121832571_121833608_121833713_121835026
transcript_92985.nic	chr8	-	835	5	NIC	ENSMUSG00000031816.16	novel	358	4	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_2	34.8595395838786	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCTGCGGCTTACAAAAA	NA	False	NA	NA	False	AATAAA	-30	NA	121835147	121830590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_121830920_121831130_121831298_121832312_121832427_121833608_121833713_121835026
transcript_92987.known	chr8	-	488	5	FSM	ENSMUSG00000031816.16	ENSMUST00000151576.8	488	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	33.138912172852	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAACTGGTCTGGAAACAC	NA	False	NA	NA	False	NA	NA	NA	121835052	121830837	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_121830915_121831130_121831298_121832456_121832571_121833608_121833713_121835026
transcript_92989.nnic	chr8	-	382	4	NNC	ENSMUSG00000031816.16	novel	8312	8	NA	NA	-16	-907	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	34.4995974211616	74	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCTCCCATACAGCAGAGT	NA	False	NA	NA	False	AAGAAA	-27	NA	121835147	121832120	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_121832164_121832312_121832427_121833608_121833713_121835026
transcript_92991.known	chr8	-	358	4	FSM	ENSMUSG00000031816.16	ENSMUST00000128503.2	358	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	34.0293990543471	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGCGAACAGGGCTGTTT	NA	False	NA	NA	False	AAAACA	-20	NA	121835082	121831213	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_121831298_121832312_121832427_121833608_121833713_121835026
transcript_92993.known	chr8	-	959	7	FSM	ENSMUSG00000031809.11	ENSMUST00000183280.2	959	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	3.09569593683445	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCTGTTGTGAATGCAGC	NA	False	NA	NA	False	GGGGCT	-18	NA	122268608	122257566	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_122257781_122258436_122258654_122260433_122260471_122262161_122262309_122266605_122266747_122267267_122267320_122268457
transcript_92994.nnic	chr8	-	956	7	NNC	ENSMUSG00000031809.11	novel	959	7	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	4.72581562625261	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAGCCACTGACAAAAACG	NA	False	NA	NA	False	AATAAA	-22	NA	122268708	122257518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_122257781_122258436_122258654_122260433_122260471_122262161_122262309_122266605_122266747_122267267_122267320_122268608
transcript_92997.known	chr8	+	1402	1	FSM	ENSMUSG00000098211.3	ENSMUST00000182145.3	1402	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATAAGGGTCTGGAGA	NA	False	NA	NA	False	NA	NA	NA	122268818	122270220	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_122268800_122270200
transcript_92998.known	chr8	+	427	1	FSM	ENSMUSG00000097987.2	ENSMUST00000182000.2	427	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTGACAATGGAAACACA	1249	False	NA	NA	False	AAGAAA	-19	NA	122308503	122308930	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_122308500_122308900
transcript_93002.known	chr8	+	766	4	FSM	ENSMUSG00000031812.17	ENSMUST00000181948.2	766	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	1182.02096240107	248	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTGCCAATAAAAAGATCAA	9968	False	NA	-7	True	AATAAA	-19	NA	122317222	122323751	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_122317304_122320228_122320390_122322724_122322832_122323334
transcript_93005.known	chr8	-	2078	12	FSM	ENSMUSG00000040263.17	ENSMUST00000045884.17	2078	12	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_5	29.2453287927892	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGCAAGATGACAATGTGC	436	False	NA	-5	True	AATAAA	-37	NA	122556308	122523051	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_122523483_122523656_122523768_122524572_122524976_122526186_122526396_122527877_122527954_122531685_122531846_122533244_122533338_122540445_122540583_122546860_122546960_122548018_122548098_122548520_122548613_122556120
transcript_93013.nic	chr8	-	460	3	ISM	ENSMUSG00000040263.17	ENSMUST00000174717.8	1662	11	-117	24660	-28	96	5prime_fragment	FALSE	canonical	3	197	junction_2	10.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCCTGTCACCCCCTCT	408	False	NA	NA	False	AGTAAA	-20	NA	122556336	122547945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_122548098_122548520_122548613_122556120
transcript_93014.known	chr8	-	478	2	FSM	ENSMUSG00000040263.17	ENSMUST00000172470.2	478	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGAGCCCTGTGATGCTGG	496	False	NA	NA	False	NA	NA	NA	122556248	122547747	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_122548098_122556120
transcript_93015.known	chr8	+	1862	1	FSM	ENSMUSG00000110631.2	ENSMUST00000212158.2	1862	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAAGTTAGAGAGAGAG	2115	False	NA	NA	False	NA	NA	NA	122559985	122561847	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_122560000_122561800
transcript_93020.known	chr8	+	599	3	FSM	ENSMUSG00000097812.2	ENSMUST00000181776.2	599	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	2125	False	NA	NA	False	AAGAAA	-26	NA	122576932	122587360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_122577154_122586834_122586957_122587104
transcript_93022.known	chr8	-	3517	10	FSM	ENSMUSG00000040010.11	ENSMUST00000045557.10	3517	10	0	0	0	0	multi-exon	FALSE	canonical	3	2143	junction_1	128.439734631066	188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTGACTGTGTTCTGTG	NA	False	NA	NA	False	TTTAAA	-18	NA	122634433	122607888	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_122609835_122610329_122610508_122611721_122611872_122612647_122612745_122613018_122613123_122613596_122613721_122614235_122614281_122615060_122615167_122623166_122623305_122633804
transcript_93029.nic	chr8	-	928	6	NIC	ENSMUSG00000025317.8	novel	1249	7	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	43.1342091616388	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGGAGAGACCTGCTTTG	NA	False	NA	NA	False	AAAAAG	-1	NA	122654235	122642864	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_122643247_122644726_122644883_122650293_122650357_122650505_122650602_122653821_122653941_122654123
transcript_93037.nnic	chr8	-	940	5	NNC	ENSMUSG00000025317.8	novel	1249	7	NA	NA	3126	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	39.219733553404	37	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGGAGAGACCTGCTTTG	NA	False	NA	NA	False	AAAAAG	-1	NA	122651087	122642864	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_-_122643247_122644726_122644883_122650293_122650357_122650505_122650602_122650844
transcript_93040.nic	chr8	-	1537	4	ISM	ENSMUSG00000025317.8	ENSMUST00000057653.8	1249	7	20914	-712	3484	712	3prime_fragment	FALSE	canonical	3	63	junction_3	15.6418242755334	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGCCTCCCCAACTGACT	NA	False	NA	NA	False	AATAAA	-18	NA	122650729	122642152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_122643247_122644726_122644883_122650293_122650357_122650505
transcript_93045.nic	chr8	-	825	4	ISM	ENSMUSG00000025317.8	ENSMUST00000057653.8	1249	7	20914	0	3484	0	3prime_fragment	FALSE	canonical	3	63	junction_3	15.6418242755334	234	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGGAGAGACCTGCTTTG	NA	False	NA	NA	False	AAAAAG	-1	NA	122650729	122642864	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_-_122643247_122644726_122644883_122650293_122650357_122650505
transcript_93050.known	chr8	+	3522	2	FSM	ENSMUSG00000074052.8	ENSMUST00000140928.3	3522	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACCCTGTCTCAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	122634571	122646429	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_122634753_122643088
transcript_93059.known	chr8	+	5444	14	FSM	ENSMUSG00000025316.17	ENSMUST00000170857.8	5444	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_9	67.0446287820338	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATTGTCTGTCTTGATGG	NA	False	NA	5	True	AATAAA	-19	NA	122677282	122755997	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122716693_122716811_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733829_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
transcript_93061.nic	chr8	+	2179	14	NIC	ENSMUSG00000025316.17	novel	5444	14	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	94	junction_9	50.3807984461442	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATCCAACCAACCAACCA	NA	False	NA	NA	False	NA	NA	NA	122677238	122752697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122716693_122716811_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733838_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
transcript_93062.nic	chr8	+	2398	14	NIC	ENSMUSG00000025316.17	novel	5444	14	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	94	junction_9	50.3807984461442	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGCTCAGTGTTGTTG	NA	False	NA	7	True	AATAAA	-15	NA	122677238	122752916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122716693_122716811_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733838_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
transcript_93069.known	chr8	+	1970	13	FSM	ENSMUSG00000025316.17	ENSMUST00000026354.15	1970	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_8	72.3410134171635	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GGAAAAAAAAAAAAAAACAA	NA	False	NA	NA	False	TTTAAA	-45	NA	122677318	122752676	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733829_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
transcript_93071.known	chr8	+	2289	13	FSM	ENSMUSG00000025316.17	ENSMUST00000093078.13	2289	13	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_4	55.5245191084283	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGCTCAGTGTTGTTG	NA	False	NA	7	True	AATAAA	-15	NA	122677230	122752916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733838_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
transcript_93079.nic	chr8	+	2155	12	NIC	ENSMUSG00000025316.17	novel	2289	13	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_10	73.218342099741	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGCTCAGTGTTGTTG	NA	False	NA	7	True	AATAAA	-15	NA	122677238	122752916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733838_122733902_122734491_122734531_122750741_122750886_122752302
transcript_93082.known	chr8	+	1289	8	FSM	ENSMUSG00000025316.17	ENSMUST00000167711.9	1289	8	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_4	96.6996190609385	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATCCAACCAACCAACCA	8827	False	NA	NA	False	NA	NA	NA	122718342	122752697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733829_122733902_122734491_122734531_122750741_122750886_122752302
transcript_93083.known	chr8	+	3810	19	FSM	ENSMUSG00000017478.16	ENSMUST00000017622.12	3810	19	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_3	72.8266375428831	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTCTGGTCCTGGTAATG	905	False	NA	14	True	AATAAA	-15	NA	123103347	123144098	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_123103540_123110138_123110744_123113600_123113686_123114431_123114504_123124556_123124706_123124974_123125068_123125743_123125902_123128329_123128448_123129889_123130159_123134070_123134263_123134981_123135108_123137619_123137725_123138022_123138167_123138376_123138443_123139728_123139890_123140001_123140202_123140595_123140690_123142774_123142872_123143214
transcript_93084.known	chr8	+	3705	18	FSM	ENSMUSG00000017478.16	ENSMUST00000093073.12	3705	18	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_3	41.8252254144417	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTGGTCCTGGTAATGT	939	False	NA	15	True	AATAAA	-16	NA	123103381	123144099	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_123103540_123110138_123110744_123113600_123113686_123124556_123124706_123124974_123125068_123125743_123125902_123128329_123128448_123129889_123130159_123134070_123134263_123134981_123135108_123137619_123137725_123138022_123138167_123138376_123138443_123139728_123139890_123140001_123140202_123140595_123140690_123142774_123142872_123143214
transcript_9309.known	chr10	-	2145	13	FSM	ENSMUSG00000036009.17	ENSMUST00000176924.8	2145	13	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_12	43.9515990102244	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACAAAATCATAGTGTTTT	NA	False	NA	NA	False	AATAAA	-9	NA	105677241	105599115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105629200_105629275_105630222_105630253_105633085_105633181_105659020_105659172_105661858_105662453_105665708_105665816_105668711_105668877_105668965_105669142_105676936
transcript_93093.known	chr8	-	744	6	FSM	ENSMUSG00000006519.12	ENSMUST00000017604.10	744	6	0	0	0	0	multi-exon	FALSE	canonical	3	631	junction_1	96.6531944635044	9406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGGACAAGAAATTCTCCAT	NA	False	NA	NA	False	AATAAA	-18	NA	123159669	123151514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_123151827_123152924_123153007_123153674_123153759_123153967_123154043_123154393_123154464_123159548
transcript_93094.known	chr8	-	638	5	FSM	ENSMUSG00000006519.12	ENSMUST00000212600.2	638	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	360.755110843908	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGGACAAGAAATTCTCCAT	NA	False	NA	NA	False	AATAAA	-18	NA	123159647	123151514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_123151827_123152924_123153007_123153967_123154043_123154393_123154464_123159548
transcript_93095.known	chr8	-	1756	10	FSM	ENSMUSG00000006517.6	ENSMUST00000006692.6	1756	10	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_4	22.2211110833319	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCCGTGTGGGCTGTGCTT	NA	False	NA	-8	True	AATAAA	-17	NA	123170161	123160339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_123160915_123161542_123161652_123163212_123163329_123163748_123163968_123164153_123164229_123164565_123164766_123166115_123166263_123166376_123166492_123166920_123166992_123170032
transcript_93096.known	chr8	-	1833	11	FSM	ENSMUSG00000006517.6	ENSMUST00000211883.2	1833	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	92.083874809871	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCCGTGTGGGCTGTGCTT	NA	False	NA	-8	True	AATAAA	-17	NA	123170135	123160339	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_123160915_123161542_123161652_123163212_123163329_123163748_123163968_123164153_123164229_123164565_123164766_123166115_123166263_123166376_123166492_123166694_123166798_123166920_123166992_123170032
transcript_93097.known	chr8	-	1628	3	FSM	ENSMUSG00000006587.7	ENSMUST00000006762.7	1628	3	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_2	1	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCCTTGACGTCTCGAG	NA	False	NA	NA	False	AATAAA	-27	NA	123187472	123180946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_123181774_123182861_123183468_123187277
transcript_93098.known	chr8	-	1783	6	FSM	ENSMUSG00000014470.5	ENSMUST00000014614.4	1783	6	0	0	0	0	multi-exon	TRUE	canonical	3	110	junction_3	7.81280999384984	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCGAGCCTTGGTCCTGGG	9981	False	NA	-5	True	AATAAA	-17	NA	123202803	123192885	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_123193974_123194700_123194809_123194978_123195094_123195352_123195466_123196938_123197096_123202601
transcript_93101.known	chr8	+	3066	15	FSM	ENSMUSG00000049482.17	ENSMUST00000116412.8	3066	15	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_5	16.7624458787116	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGCCGTTGTACAGCTC	8862	False	NA	NA	False	NA	NA	NA	123202881	123209831	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_123203035_123203253_123203329_123203644_123203724_123203915_123203976_123204923_123204985_123205415_123205526_123205631_123205934_123206015_123206152_123206328_123206461_123206881_123206974_123207640_123207745_123207824_123207964_123208069_123208137_123208209_123208269_123208334
transcript_93103.known	chr8	+	3999	15	FSM	ENSMUSG00000049482.17	ENSMUST00000151855.8	3999	15	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_11	35.9174222974004	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACGCAGGGTGTGATCTG	8928	False	NA	NA	False	NA	NA	NA	123202947	123210877	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_123203035_123203253_123203329_123203644_123203724_123203915_123203976_123204923_123204985_123205415_123205526_123205631_123205934_123206015_123206152_123206328_123206461_123206881_123206974_123207640_123207745_123207871_123207964_123208069_123208137_123208209_123208269_123208334
transcript_93126.known	chr8	+	244	3	FSM	ENSMUSG00000049482.17	ENSMUST00000212499.2	244	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	63	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCCTACAGTACTTGTG	1544	False	NA	13	True	AATAAA	-15	NA	123208083	123208482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_123208137_123208209_123208269_123208350
transcript_93127.known	chr8	-	2860	3	FSM	ENSMUSG00000014444.18	ENSMUST00000123671.8	2860	3	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_2	4	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAACGGACTGTCACAGAC	1265	False	NA	-21	True	AGTAAA	-15	NA	123211519	123208459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_123208971_123209048_123209266_123209387
transcript_93131.known	chr8	+	2189	10	FSM	ENSMUSG00000006585.4	ENSMUST00000006760.3	2189	10	0	0	0	0	multi-exon	FALSE	canonical	3	858	junction_2	66.8792905627208	481	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTGAACCTGTCACCGTA	2586	False	NA	27	True	AATAAA	-36	NA	123294753	123299867	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_123295011_123295825_123295985_123296062_123296215_123296642_123296841_123296932_123297079_123297179_123297278_123297979_123298169_123298434_123298588_123298675_123298878_123299232
transcript_9314.known	chr10	-	2033	12	FSM	ENSMUSG00000036009.17	ENSMUST00000046638.10	2033	12	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_11	25.2121576340063	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATCAATGTTCTTGAGTG	NA	False	NA	NA	False	AATAAA	-22	NA	105677239	105599049	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105629200_105629275_105630222_105630253_105633085_105633181_105659020_105659172_105661858_105662453_105665708_105665816_105668711_105668877_105676936
transcript_93141.known	chr8	-	554	6	FSM	ENSMUSG00000006589.9	ENSMUST00000212834.2	554	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	691.248030738605	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTGGAGTGTGTGAGCC	NA	False	NA	NA	False	NA	NA	NA	123303309	123301720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_123301767_123301875_123301955_123302140_123302275_123302619_123302746_123302857_123302971_123303253
transcript_93144.known	chr8	-	723	5	FSM	ENSMUSG00000006589.9	ENSMUST00000212093.2	723	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	642.508171154266	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCAGGAACTGCTTGGTG	NA	False	NA	NA	False	NA	NA	NA	123303471	123301587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_123301767_123301875_123301955_123302140_123302275_123302857_123302971_123303253
transcript_93145.known	chr8	-	590	5	FSM	ENSMUSG00000006589.9	ENSMUST00000211823.2	590	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	642.508171154266	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGCAGGGAGAGGCTAGG	NA	False	NA	NA	False	NA	NA	NA	123303410	123301680	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_123301767_123301875_123301955_123302140_123302275_123302857_123302992_123303253
transcript_93152.known	chr8	-	849	5	FSM	ENSMUSG00000006589.9	ENSMUST00000006764.9	849	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	617.095414016342	21148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTGCTTCTCCTCAGTTT	NA	False	NA	-7	True	AATAAA	-15	NA	123303629	123301375	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_123301767_123301875_123301955_123302140_123302275_123303253_123303361_123303491
transcript_93153.known	chr8	-	560	3	FSM	ENSMUSG00000006589.9	ENSMUST00000213062.2	560	3	0	0	0	0	multi-exon	FALSE	canonical	3	1410	junction_2	2	532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTTCTCCTCAGTTTGT	NA	False	NA	-5	True	AATAAA	-17	NA	123302228	123301373	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_123301767_123301875_123301955_123302140
transcript_93154.known	chr8	-	660	6	FSM	ENSMUSG00000006589.9	ENSMUST00000213030.2	660	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	634.519030447472	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGAGCTGGCTAGATGGT	NA	False	NA	NA	False	NA	NA	NA	123303557	123301626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_123301767_123301875_123301955_123302140_123302275_123302857_123302992_123303253_123303361_123303491
transcript_93155.known	chr8	-	929	5	FSM	ENSMUSG00000006589.9	ENSMUST00000213029.2	929	5	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_3	493.303152229945	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCATTCTTCTCTCTCCTCC	NA	False	NA	NA	False	NA	NA	NA	123303592	123301654	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_123301767_123301875_123301955_123302140_123302275_123302857_123303361_123303491
transcript_93156.known	chr8	-	2557	14	FSM	ENSMUSG00000015027.12	ENSMUST00000015171.11	2557	14	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_10	4.2966892442366	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTATCCTGGTCTTTTGTT	NA	False	NA	-4	True	NA	NA	NA	123338202	123304980	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_123305937_123307789_123307908_123311650_123311773_123318176_123318280_123318939_123319077_123322504_123322609_123325258_123325399_123325777_123325906_123326011_123326079_123327213_123327358_123330116_123330220_123330877_123330953_123331878_123332003_123337966
transcript_93157.known	chr8	-	2111	12	FSM	ENSMUSG00000015027.12	ENSMUST00000212319.2	2111	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	6.65191204724608	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTGGGTTGGTTTGAGA	NA	False	NA	NA	False	AATAAA	-38	NA	123338143	123305127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_123305937_123307789_123307908_123311650_123311773_123322504_123322609_123325258_123325399_123325777_123325906_123326011_123326079_123327213_123327358_123330116_123330220_123330877_123330953_123331878_123332003_123337966
transcript_93164.known	chr8	+	1659	5	FSM	ENSMUSG00000015013.10	ENSMUST00000015157.10	1659	5	0	0	0	0	multi-exon	FALSE	canonical	3	528	junction_1	75.9884859699152	2761	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAGAGTGAGCCTCAGGT	5522	False	NA	NA	False	NA	NA	NA	123338384	123343399	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_123338433_123339804_123339978_123340659_123340748_123341046_123341127_123342129
transcript_93166.known	chr8	+	426	4	FSM	ENSMUSG00000015013.10	ENSMUST00000212477.2	426	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	309.227352534596	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCACCACTGCCCGGCTTC	5516	False	NA	NA	False	NA	NA	NA	123338378	123341009	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_123338433_123339804_123339978_123340659_123340748_123340898
transcript_93171.known	chr8	+	2206	10	FSM	ENSMUSG00000015016.9	ENSMUST00000015160.6	2206	10	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	8.97458689169274	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGACCTGTGAGCTGTG	9534	False	NA	13	True	AATAAA	-25	NA	123502243	123544619	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_123502330_123506684_123507375_123508171_123508328_123510685_123510841_123512557_123512704_123517328_123517439_123529253_123529381_123539733_123539869_123540298_123540411_123544130
transcript_93172.known	chr8	+	2171	10	FSM	ENSMUSG00000015016.9	ENSMUST00000212790.2	2171	10	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	7.64489662745314	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGACCTGTGAGCTGTG	9607	False	NA	13	True	AATAAA	-25	NA	123502316	123544619	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_123502368_123506684_123507375_123508171_123508328_123510685_123510841_123512557_123512704_123517328_123517439_123529253_123529381_123539733_123539869_123540298_123540411_123544130
transcript_93177.known	chr8	+	1097	2	FSM	ENSMUSG00000110440.2	ENSMUST00000212728.2	1097	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATTAAAAAAAAATTAAT	NA	False	NA	NA	False	TATAAA	-7	NA	123597287	123628196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_123597547_123627358
transcript_93179.known	chr8	+	2137	1	FSM	ENSMUSG00000099881.2	ENSMUST00000186531.2	2137	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	298	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATGTTTTACCTGCTGCT	NA	False	NA	9	True	NA	NA	NA	123769204	123771341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_123769200_123771300
transcript_93191.known	chr8	+	780	6	FSM	ENSMUSG00000000740.13	ENSMUST00000000756.6	780	6	0	0	0	0	multi-exon	FALSE	canonical	3	17818	junction_5	2681.35350895774	47012	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTTTCTTTGTCTTTT	NA	False	NA	17	True	AATAAA	-18	NA	123829088	123831983	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_123829185_123829391_123829502_123829583_123829726_123829921_123830096_123830636_123830694_123831782
transcript_93206.known	chr8	+	488	2	FSM	ENSMUSG00000000740.13	ENSMUST00000212887.2	488	2	0	0	0	0	multi-exon	FALSE	canonical	3	17818	junction_1	0	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCATAAAGCAAAAGCTGGGT	NA	False	NA	4	True	AATAAA	-5	NA	123830393	123831970	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_123830694_123831782
transcript_93207.known	chr8	+	1969	3	FSM	ENSMUSG00000000740.13	ENSMUST00000129311.2	1969	3	0	0	0	0	multi-exon	FALSE	canonical	3	21322	junction_2	2171	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTTTCTTTGTCTTTT	NA	False	NA	17	True	AATAAA	-18	NA	123829391	123831983	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_123829502_123829583_123830096_123830636
transcript_93210.nic	chr8	+	1813	9	ISM	ENSMUSG00000034796.15	ENSMUST00000037900.9	2398	15	9046	0	-93	0	3prime_fragment	FALSE	canonical	1	2	junction_1	7.1894019222742	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCCTGTGCCTTTCTTGC	NA	False	NA	4	True	AATAAA	-16	NA	123853162	123861921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_123853474_123854091_123854179_123854471_123854532_123855316_123855451_123856281_123856337_123856792_123856845_123856911_123857046_123860347_123860585_123861178
transcript_93224.known	chr8	-	3805	7	FSM	ENSMUSG00000000739.15	ENSMUST00000000755.15	3805	7	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_6	18.7764628073435	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACTTGCCTTGGTCAT	9743	False	NA	NA	False	NA	NA	NA	123885009	123866930	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_123869886_123872080_123872262_123874789_123874885_123875048_123875176_123875957_123876173_123884177_123884327_123884926
transcript_93225.nic	chr8	-	1247	7	NIC	ENSMUSG00000000739.15	novel	3805	7	NA	NA	-39	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	23.3380947522857	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACAGACTCTGTCCCAGG	9659	False	NA	-7	True	AATAAA	-16	NA	123885093	123869587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_123869886_123872080_123872262_123874789_123874885_123875048_123875176_123875957_123876173_123884177_123884342_123884926
transcript_93227.known	chr8	-	1053	6	FSM	ENSMUSG00000000739.15	ENSMUST00000122819.8	1053	6	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	38.0189426470542	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACAGACTCTGTCCCAGG	9743	False	NA	-7	True	AATAAA	-16	NA	123885009	123869587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_123869886_123872080_123872262_123875048_123875176_123875957_123876173_123884177_123884327_123884926
transcript_93229.known	chr8	-	674	6	FSM	ENSMUSG00000000739.15	ENSMUST00000146007.2	674	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	45.4620721041177	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAAGGGGTGGCTGAGCCT	9785	False	NA	NA	False	NA	NA	NA	123884967	123874858	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_123874885_123875048_123875176_123875957_123876173_123879890_123880007_123884177_123884327_123884926
transcript_93233.known	chr8	+	1115	2	FSM	ENSMUSG00000110537.2	ENSMUST00000212490.2	1115	2	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	0	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAACATGGTGGTGTGTCT	3328	False	NA	1	True	NA	NA	NA	123899583	123905504	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_123899783_123904588
transcript_93234.known	chr8	+	2236	11	FSM	ENSMUSG00000019278.6	ENSMUST00000019422.6	2236	11	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	3.46554469023269	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCAATGACCCCTTTGTG	NA	False	NA	NA	False	AATAAA	-27	NA	123912980	123928551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_123913181_123920771_123920926_123925452_123925586_123925783_123925917_123926032_123926184_123926360_123926431_123926679_123926857_123926945_123927031_123927105_123927182_123927376_123927513_123927630
transcript_93238.known	chr8	+	399	1	FSM	ENSMUSG00000069862.7	ENSMUST00000139165.2	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3833	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATTTTGGCTGAAAAAA	NA	False	NA	NA	False	AAGAAA	-4	NA	123933361	123933760	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_123933400_123933800
transcript_93239.known	chr8	-	2140	7	FSM	ENSMUSG00000000743.10	ENSMUST00000000759.9	2140	7	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_1	74.3544439380279	761	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCTCAGACTTTTTTTTTT	9745	False	NA	-4	True	AATAAA	-16	NA	123939499	123931002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_123932486_123932882_123933071_123934211_123934341_123934702_123934850_123935759_123935838_123936954_123936975_123939404
transcript_93241.known	chr8	+	491	3	FSM	ENSMUSG00000048478.8	ENSMUST00000060133.8	491	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	0.5	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGGGATCCTTTCCTGTG	NA	False	NA	NA	False	AATAAA	-15	NA	123939622	123948783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_123939737_123939826_123939977_123948556
transcript_93243.nic	chr8	+	416	3	NIC	ENSMUSG00000048478.8	novel	486	3	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	4	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGGGATCCTTTCCTGTG	NA	False	NA	NA	False	AATAAA	-15	NA	123939570	123948783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_123939610_123939826_123939977_123948556
transcript_93253.known	chr8	+	1642	13	FSM	ENSMUSG00000033862.8	ENSMUST00000036880.8	1642	13	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_10	22.2279853638006	865	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACAGTTTGGCAATCC	2125	False	NA	10	True	GATAAA	-11	NA	123951580	123958989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_123951708_123953085_123953159_123953684_123953757_123954161_123954265_123954398_123954481_123955067_123955136_123955586_123955640_123955850_123955921_123957006_123957067_123957332_123957457_123957530_123957671_123958098_123958152_123958372
transcript_93258.known	chr8	+	1638	13	FSM	ENSMUSG00000033862.8	ENSMUST00000212193.2	1638	13	0	0	0	0	multi-exon	FALSE	canonical	1	10	junction_5	68.2322422970907	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACAGTTTGGCAATCC	2153	False	NA	10	True	GATAAA	-11	NA	123951608	123958989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_123951708_123953085_123953159_123953684_123953757_123954161_123954265_123954398_123954505_123955067_123955136_123955586_123955640_123955850_123955921_123957006_123957067_123957332_123957457_123957530_123957671_123958098_123958152_123958372
transcript_93265.known	chr8	+	1580	13	FSM	ENSMUSG00000033862.8	ENSMUST00000213005.2	1580	13	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	49.2958754190788	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACAGTTTGGCAATCC	2149	False	NA	10	True	GATAAA	-11	NA	123951604	123958989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_123951670_123953085_123953159_123953684_123953757_123954161_123954265_123954398_123954481_123955067_123955136_123955586_123955640_123955850_123955921_123957006_123957067_123957332_123957457_123957530_123957671_123958098_123958152_123958372
transcript_93305.known	chr8	+	4071	11	FSM	ENSMUSG00000001065.16	ENSMUST00000001092.15	4071	11	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	4.69148164229596	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCAGAGTTGTTACTGTT	1634	False	NA	21	True	AGTAAA	-24	NA	123980933	123996484	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_123981663_123982445_123982750_123983022_123983070_123983157_123983605_123985049_123985129_123986169_123986254_123991554_123991666_123991733_123991810_123992052_123992171_123994338_123994439_123994508
transcript_93320.known	chr8	-	895	6	FSM	ENSMUSG00000032815.17	ENSMUST00000150318.2	895	6	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_3	15.8795465930234	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTTGTGCATGTCTCA	NA	False	NA	NA	False	ATTAAA	-16	NA	124045299	124039021	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_124039397_124039759_124039856_124039978_124040113_124043101_124043196_124044800_124044911_124045213
transcript_93324.known	chr8	+	359	3	FSM	ENSMUSG00000033862.8	ENSMUST00000212035.2	359	3	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	82	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCACAGTCTGTCACCGCA	2144	False	NA	NA	False	NA	NA	NA	123951599	123953900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_123951670_123953085_123953159_123953684
transcript_93325.known	chr8	-	1361	4	FSM	ENSMUSG00000001062.19	ENSMUST00000129591.2	1361	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	3.68178700572909	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGAAAAAAGAAAAGAAA	2347	False	NA	NA	False	NA	NA	NA	123980789	123976450	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_123977580_123977665_123977759_123979343_123979420_123980726
transcript_93326.known	chr8	+	2330	15	FSM	ENSMUSG00000010154.8	ENSMUST00000010298.7	2330	15	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_7	8.26752930544105	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATACATTGTCTCTTTCCC	NA	False	NA	18	True	NA	NA	NA	124059451	124096254	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_124059760_124073378_124073423_124080757_124081115_124083261_124083340_124083452_124083618_124084381_124084469_124084848_124084973_124086080_124086251_124086811_124087002_124087988_124088105_124089757_124089893_124090061_124090130_124093574_124093603_124095416_124095533_124095910
transcript_93328.nic	chr8	+	658	4	ISM	ENSMUSG00000010154.8	ENSMUST00000212404.2	2158	14	12970	0	12970	0	3prime_fragment	FALSE	canonical	3	72	junction_1	3.68178700572909	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATACATTGTCTCTTTCCC	NA	False	NA	18	True	NA	NA	NA	124089959	124096254	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_124090130_124093574_124093603_124095416_124095533_124095910
transcript_93335.known	chr8	+	2738	18	FSM	ENSMUSG00000001472.18	ENSMUST00000057934.10	2738	18	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_17	92.4052680533628	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAAATTGTCC	NA	False	NA	NA	False	NA	NA	NA	124100562	124128631	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124127814
transcript_93336.known	chr8	+	2582	18	FSM	ENSMUSG00000001472.18	ENSMUST00000108840.4	2582	18	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_17	99.4416940675849	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAAAACATGGTGATAT	NA	False	NA	8	True	AAGAAA	-13	NA	124100561	124130545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124129885
transcript_93337.known	chr8	+	2649	18	FSM	ENSMUSG00000001472.18	ENSMUST00000212571.2	2649	18	0	0	0	0	multi-exon	TRUE	canonical	3	129	junction_17	98.3685253625717	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAAAACATGGTGATAT	NA	False	NA	8	True	AAGAAA	-13	NA	124100491	124130545	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124129888
transcript_93352.known	chr8	+	1953	17	FSM	ENSMUSG00000001472.18	ENSMUST00000212569.2	1953	17	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	148.36315243348	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACTGTCCAGATGCTGTG	NA	False	NA	-77	True	NA	NA	NA	124100611	124127970	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_124100804_124108138_124108301_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124127814
transcript_93361.nic	chr8	+	733	3	ISM	ENSMUSG00000001472.18	ENSMUST00000057934.10	2738	18	-295	19331	-224	-801	5prime_fragment	FALSE	canonical	3	528	junction_1	30	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAGCAGAAAAATAAGAAAA	NA	False	NA	NA	False	AAGAAA	-3	NA	124100267	124109300	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_124100804_124108138_124108301_124109265
transcript_93362.known	chr8	+	2572	17	FSM	ENSMUSG00000001472.18	ENSMUST00000212470.2	2572	17	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	151.959904251089	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTTGTTTTTTTTTTGTG	NA	False	NA	37	True	AAGAAA	-42	NA	124100522	124130574	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_124100804_124108138_124108301_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124129888
transcript_93363.known	chr8	+	5002	17	FSM	ENSMUSG00000001472.18	ENSMUST00000211932.2	5002	17	0	0	0	0	multi-exon	FALSE	canonical	3	455	junction_12	41.7738984744062	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACATGGTGATATGGCC	NA	False	NA	12	True	AAGAAA	-17	NA	124100594	124130549	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363
transcript_93364.known	chr8	+	211	3	FSM	ENSMUSG00000001472.18	ENSMUST00000212498.2	211	3	0	0	0	0	multi-exon	FALSE	canonical	3	489	junction_2	49.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGAGGACAGCAGTGGGT	NA	False	NA	NA	False	NA	NA	NA	124108202	124110101	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_124108301_124109265_124109341_124110063
transcript_93365.known	chr8	+	3242	14	FSM	ENSMUSG00000001482.16	ENSMUST00000108832.8	3242	14	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	108.849605816422	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTACTAGTCTGCCATTTG	NA	False	NA	31	True	TATAAA	-20	NA	124169743	124190009	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_124169791_124172836_124172924_124174055_124174103_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
transcript_93367.known	chr8	+	3214	13	FSM	ENSMUSG00000001482.16	ENSMUST00000001522.10	3214	13	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	97.6160278278567	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTACTAGTCTGCCATTTG	NA	False	NA	31	True	TATAAA	-20	NA	124169724	124190009	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_124169791_124172836_124172924_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
transcript_93369.nnic	chr8	+	1518	12	NNC	ENSMUSG00000001482.16	novel	3127	12	NA	NA	-28	1	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_11	88.9284232560654	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTATCCCTCTCTCAGT	NA	False	NA	NA	False	NA	NA	NA	124169696	124187255	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_124169791_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124187085
transcript_93370.known	chr8	+	3127	12	FSM	ENSMUSG00000001482.16	ENSMUST00000065534.10	3127	12	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	53.2429330273546	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTACTAGTCTGCCATTTG	NA	False	NA	31	True	TATAAA	-20	NA	124169724	124190009	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_124169791_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
transcript_93373.known	chr8	+	3191	12	FSM	ENSMUSG00000001482.16	ENSMUST00000108830.2	3191	12	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	79.5842502795747	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAAATGTTACTAGTCT	NA	False	NA	23	True	TATAAA	-12	NA	124170046	124190001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_124170185_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
transcript_93375.known	chr8	+	1909	11	FSM	ENSMUSG00000001482.16	ENSMUST00000093049.10	1909	11	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	55.0123622470441	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGTTATCCCTCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	124169724	124187254	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_124169791_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555
transcript_93378.known	chr8	+	4227	17	FSM	ENSMUSG00000031967.16	ENSMUST00000001520.13	4227	17	0	0	0	0	multi-exon	FALSE	canonical	3	631	junction_4	44.0414843499853	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTATGGGAGTTTTGCCT	7495	False	NA	16	True	TTTAAA	-20	NA	124204641	124230655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_124204787_124207087_124207176_124207809_124207885_124211341_124211428_124212627_124212778_124214097_124214167_124214939_124215065_124216493_124216765_124219279_124219418_124219613_124219768_124220566_124220675_124221544_124221671_124225326_124225438_124226730_124226847_124227971_124228173_124228253_124228449_124228586
transcript_93381.known	chr8	+	4111	16	FSM	ENSMUSG00000031967.16	ENSMUST00000098320.6	4111	16	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_13	180.225291109643	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTATGGGAGTTTTGCCT	7495	False	NA	16	True	TTTAAA	-20	NA	124204641	124230655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_124204787_124207087_124207176_124207809_124207885_124211341_124211428_124212627_124212778_124214097_124214167_124214939_124215065_124216493_124216765_124219279_124219418_124219613_124219768_124220566_124220675_124221544_124221671_124225326_124225438_124227971_124228173_124228253_124228449_124228586
transcript_93383.nic	chr8	+	1353	8	ISM	ENSMUSG00000031967.16	ENSMUST00000001520.13	4227	17	-57	13604	-57	374	5prime_fragment	FALSE	canonical	3	631	junction_4	49.623891546763	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTGTTGTTTGTTTTTCT	7438	False	NA	NA	False	NA	NA	NA	124204584	124217051	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_124204787_124207087_124207176_124207809_124207885_124211341_124211428_124212627_124212778_124214097_124214167_124214939_124215065_124216493
transcript_93386.known	chr8	+	419	3	FSM	ENSMUSG00000031967.16	ENSMUST00000133606.2	419	3	0	0	0	0	multi-exon	FALSE	canonical	3	684	junction_2	47.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAGAGAGAGAAAAAAAAAA	7532	False	NA	NA	False	NA	NA	NA	124204678	124208032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_124204787_124207087_124207176_124207809
transcript_93387.known	chr8	+	1681	11	FSM	ENSMUSG00000040220.11	ENSMUST00000093043.7	1681	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	6.18789140176199	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTCTGTCGTTGTGAGG	NA	False	NA	7	True	AATGAA	-21	NA	124245572	124263389	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_124245692_124247342_124247430_124249676_124249875_124250816_124251024_124252357_124252413_124253203_124253410_124254650_124254819_124255116_124255204_124257565_124257776_124259991_124260058_124263111
transcript_93388.known	chr8	-	119	1	FSM	ENSMUSG00000118922.1	ENSMUST00001239555.1	119	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGACTCCCCTCTGTCT	3749	False	NA	NA	False	NA	NA	NA	124270730	124270611	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_124270600_124270700
transcript_93389.known	chr8	-	119	1	FSM	ENSMUSG00000119118.1	ENSMUST00000240190.1	119	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGACTCCCCTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	124302933	124302814	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_124302800_124302900
transcript_93390.known	chr8	-	119	1	FSM	ENSMUSG00001118664.1	ENSMUST00000240133.1	119	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGACTCCCCTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	124313099	124312980	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_124313000_124313100
transcript_93391.known	chr8	-	119	1	FSM	ENSMUSG00000119762.1	ENSMUST00000239748.1	119	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGACTCCCCTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	124331805	124331686	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_124331700_124331800
transcript_93392.known	chr8	-	119	1	FSM	ENSMUSG00000119014.1	ENSMUST00000240509.1	119	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGACTCCCCTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	124343667	124343548	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_124343500_124343700
transcript_93393.known	chr8	+	782	2	FSM	ENSMUSG00000039960.6	ENSMUST00000136615.2	782	2	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAACCAGTAGCTTATGT	NA	False	NA	NA	False	AATGAA	-43	NA	124380667	124382724	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_124380956_124382230
transcript_93395.known	chr8	-	3536	3	FSM	ENSMUSG00000097203.3	ENSMUST00000181805.3	3536	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGTCAGCTTTAATGGATA	NA	False	NA	NA	False	NA	NA	NA	124481465	124471369	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_124474108_124474603_124474733_124480796
transcript_93397.known	chr8	+	1419	8	FSM	ENSMUSG00000019478.18	ENSMUST00000118535.9	1419	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	133.326360361884	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTACACTGTCCTGCTC	NA	False	NA	12	True	AATAAA	-21	NA	124532723	124562026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_124532906_124550552_124550634_124554062_124554178_124555734_124555798_124556971_124557127_124559541_124559638_124560753_124560887_124561432
transcript_93398.nic	chr8	+	1381	8	NIC	ENSMUSG00000019478.18	novel	1419	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	159.435483721121	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTACACTGTCCTGCTC	NA	False	NA	12	True	AATAAA	-21	NA	124532723	124562026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_124532906_124550552_124550634_124554062_124554178_124555734_124555798_124557009_124557127_124559541_124559638_124560753_124560887_124561432
transcript_93399.known	chr8	+	1080	7	FSM	ENSMUSG00000019478.18	ENSMUST00000117702.2	1080	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	143.451211218309	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTCTCCAGCCCACCTGG	NA	False	NA	NA	False	NA	NA	NA	124532806	124561224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_124532906_124550552_124550634_124554062_124554178_124555734_124555798_124556971_124557127_124559541_124559638_124560753
transcript_93412.known	chr8	+	367	1	FSM	ENSMUSG00000083911.2	ENSMUST00000118982.2	367	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGAGATGACAACGACAAT	4452	False	NA	NA	False	NA	NA	NA	124580567	124580934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_124580600_124580900
transcript_93414.known	chr8	-	5808	26	FSM	ENSMUSG00000039509.9	ENSMUST00000044795.8	5808	26	0	0	0	0	multi-exon	TRUE	canonical	3	328	junction_14	43.1434815470425	334	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGCTTTTCACTTGTAA	NA	False	NA	NA	False	AATAAA	-17	NA	124676004	124623861	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_124626250_124629337_124629427_124631290_124631356_124632952_124633034_124634494_124634614_124636622_124636759_124638487_124638647_124641236_124641371_124641913_124642166_124643022_124643123_124644168_124644292_124645510_124645736_124647586_124647682_124649087_124649252_124653868_124653961_124655982_124656141_124657594_124657743_124660105_124660254_124662825_124662897_124663569_124663726_124664873_124665045_124665778_124665914_124667773_124667882_124670993_124671098_124673231_124673351_124675736
transcript_93417.known	chr8	-	4306	13	FSM	ENSMUSG00000031974.9	ENSMUST00000075578.7	4306	13	0	0	0	0	multi-exon	TRUE	canonical	3	39	junction_3	9.48536885008813	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTCTGTGTGTTATGA	6877	False	NA	0	True	ATTAAA	-18	NA	124709861	124679197	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_124681315_124681461_124681497_124682511_124682556_124685237_124685419_124686948_124687029_124688734_124688945_124689731_124689828_124691729_124691866_124693204_124693352_124694739_124694875_124696458_124696662_124697709_124697911_124709140
transcript_93420.known	chr8	-	2912	5	FSM	ENSMUSG00000038697.16	ENSMUST00000093039.6	2912	5	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_4	121.207208944023	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATGTGTGGCATCT	4094	False	NA	36	True	ATTAAA	-15	NA	124747747	124723056	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_124724846_124729715_124730441_124734929_124735035_124736427_124736573_124747599
transcript_93421.known	chr8	-	2973	5	FSM	ENSMUSG00000038697.16	ENSMUST00000165628.9	2973	5	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_4	173.639713199487	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATGTGTGGCATCT	3705	False	NA	36	True	ATTAAA	-15	NA	124748136	124723056	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_124724846_124729715_124730441_124734929_124735035_124736427_124736573_124747927
transcript_93422.known	chr8	+	6073	10	FSM	ENSMUSG00000031976.15	ENSMUST00000173168.8	6073	10	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_5	56.6139188050884	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATAGTATTCTGCTGGGTA	NA	False	NA	20	True	AATAAA	-24	NA	124748246	124775243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_124748547_124750198_124750338_124751794_124751972_124754597_124757929_124761766_124761915_124763374_124763486_124764899_124765143_124767904_124767993_124771817_124771958_124773847
transcript_93425.known	chr8	+	2825	18	FSM	ENSMUSG00000031979.18	ENSMUST00000034460.11	2825	18	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_7	26.4246660485719	366	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGAGTTATGTATCCAG	NA	False	NA	29	True	AATAAA	-19	NA	125247505	125278747	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_125247691_125252369_125252532_125253838_125253905_125255714_125255796_125256636_125256741_125259167_125259277_125259952_125260133_125262137_125262263_125264521_125264649_125267711_125267852_125269627_125269690_125270748_125270901_125271867_125272042_125272758_125272832_125273289_125273433_125275255_125275396_125276905_125277090_125278129
transcript_93433.nic	chr8	+	728	5	ISM	ENSMUSG00000031981.8	ENSMUST00000093033.6	2330	20	37556	0	227	0	3prime_fragment	FALSE	canonical	1	2	junction_3	0.707106781186548	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGTACCATCTGTGTCTGTG	NA	False	NA	NA	False	TATAAA	-23	NA	125340405	125345470	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_125340629_125341286_125341366_125342891_125343009_125344171_125344231_125345220
transcript_93435.known	chr8	-	3307	4	FSM	ENSMUSG00000031983.8	ENSMUST00000034464.8	3307	4	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_2	4.10960933531265	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGATCTGTTTCATTTTC	NA	False	NA	-3	True	AATAAA	-19	NA	125390108	125362494	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_125364704_125365829_125366355_125378109_125378161_125389586
transcript_93439.known	chr8	-	2905	19	FSM	ENSMUSG00000037300.20	ENSMUST00000231984.2	2905	19	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_6	106.569342173807	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTGGTCAGTTTGGTCGTT	NA	False	NA	-8	True	ATTAAA	-16	NA	125448707	125398070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403187_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125436641_125436713_125439355_125439432_125440927_125441023_125448475
transcript_93440.known	chr8	-	2970	20	FSM	ENSMUSG00000037300.20	ENSMUST00000117624.9	2970	20	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_15	118.173026812077	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTGGTCAGTTTGGTCGTT	NA	False	NA	-8	True	ATTAAA	-16	NA	125448703	125398070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403190_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125426394_125426461_125436641_125436713_125439355_125439432_125440927_125441023_125448475
transcript_93441.known	chr8	-	3301	23	FSM	ENSMUSG00000037300.20	ENSMUST00000214828.2	3301	23	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_6	114.790718661872	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGTGGTCAGTTTGGTCGT	NA	False	NA	-9	True	ATTAAA	-15	NA	125448717	125398071	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403187_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125421568_125421680_125422374_125422492_125424732_125424826_125426394_125426461_125436641_125436713_125439355_125439432_125440927_125441023_125448475
transcript_93442.known	chr8	-	3148	21	FSM	ENSMUSG00000037300.20	ENSMUST00000118134.3	3148	21	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_17	74.4114238541368	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCGTGGTCAGTTTGGTC	NA	False	NA	-11	True	ATTAAA	-13	NA	125448722	125398073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403190_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125421568_125421680_125422374_125422492_125436641_125436713_125439355_125439432_125440927_125441023_125448475
transcript_93446.nnic	chr8	+	1191	6	NNC	ENSMUSG00000031982.6	novel	1165	6	NA	NA	-16	-13	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_5	37.0113496106262	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCCAGTTCAGTAACTAAG	NA	False	NA	8	True	AATAAA	-17	NA	125448861	125460849	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_125449082_125451994_125452115_125455067_125455222_125457530_125457756_125458535_125458681_125460522
transcript_93447.known	chr8	+	1165	6	FSM	ENSMUSG00000031982.6	ENSMUST00000034463.4	1165	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_5	35.5111250173801	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTAAGGTTGTCTTTTGAA	NA	False	NA	21	True	AATAAA	-30	NA	125448877	125460862	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_125449082_125451994_125452115_125455067_125455222_125457530_125457756_125458535_125458681_125460545
transcript_93456.known	chr8	+	891	6	FSM	ENSMUSG00000031982.6	ENSMUST00000212036.2	891	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_5	39.5605864466138	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTCCCTTATAGGAATGA	NA	False	NA	NA	False	NA	NA	NA	125448897	125460695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_125449082_125451994_125452115_125455107_125455222_125457577_125457756_125458535_125458681_125460545
transcript_93458.nic	chr8	+	1126	5	ISM	ENSMUSG00000031982.6	ENSMUST00000034463.4	1165	6	-16	1920	-16	-225	5prime_fragment	FALSE	canonical	3	83	junction_2	14.0890028036054	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACAGTGGCCTCGTCATTC	NA	False	NA	NA	False	NA	NA	NA	125448861	125458942	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_125449082_125451994_125452115_125455067_125455222_125457530_125457756_125458535
transcript_93468.nic	chr8	+	655	4	NIC	ENSMUSG00000031982.6	novel	1165	6	NA	NA	-16	-1429	combination_of_known_junctions	FALSE	canonical	3	31	junction_3	27.4752413799932	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCAGGCAGTCAGAGGTG	NA	False	NA	NA	False	ATTAAA	-21	NA	125448861	125457738	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_125449082_125451994_125452115_125455067_125455222_125457577
transcript_93475.known	chr8	+	2984	16	FSM	ENSMUSG00000031985.10	ENSMUST00000034466.10	2984	16	0	0	0	0	multi-exon	FALSE	canonical	3	573	junction_6	36.0101220337961	1785	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCCAATGGTCTTATTAAC	5120	False	NA	34	True	AATAAA	-25	NA	125589771	125616796	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_125590052_125597514_125597698_125600071_125600249_125600957_125601088_125603658_125603787_125604173_125604250_125605251_125605404_125605522_125605654_125606867_125607092_125610094_125610338_125611703_125611784_125612533_125612675_125613421_125613519_125613591_125613686_125614496_125614559_125616010
transcript_93482.known	chr8	-	2081	3	FSM	ENSMUSG00000031984.9	ENSMUST00000211971.2	2081	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	922.5	303	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTTGCTGTTTTGCCTAC	NA	False	NA	NA	False	AATAAA	-26	NA	125589753	125563683	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_125564412_125586787_125588011_125589623
transcript_93483.known	chr8	+	4464	5	FSM	ENSMUSG00000031986.7	ENSMUST00000034467.7	4464	5	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_4	8.10478253872366	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTGATGTGTCTTTCCG	NA	False	NA	9	True	AATAAA	-18	NA	125624624	125632900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_125625121_125625814_125625915_125626945_125627075_125628363_125628632_125629429
transcript_93484.known	chr8	-	1075	2	FSM	ENSMUSG00000110706.2	ENSMUST00000213052.2	1075	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTCCGTGCTGGCTCGTC	NA	False	NA	NA	False	NA	NA	NA	125626869	125624632	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_125625644_125626805
transcript_93485.known	chr8	-	3594	5	FSM	ENSMUSG00000031987.7	ENSMUST00000034469.7	3594	5	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_4	22.6605383872493	250	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACTGTTGTCACCTCCAG	NA	False	NA	-17	True	ATTAAA	-30	NA	125676063	125635325	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_125637503_125638479_125638548_125640755_125640893_125642399_125642520_125674971
transcript_93489.known	chr8	+	2391	6	FSM	ENSMUSG00000056820.8	ENSMUST00000075896.7	2391	6	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_1	21.35790251874	1146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCCCTCTGGTTAAGCTT	5194	False	NA	9	True	AATAAA	-14	NA	125739735	125760931	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_125739952_125740248_125740354_125742393_125742509_125751245_125751377_125755506_125755635_125759235
transcript_93493.known	chr8	+	2169	5	FSM	ENSMUSG00000056820.8	ENSMUST00000212603.2	2169	5	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_1	23.7631542519086	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAGAAAAA	5246	False	NA	NA	False	NA	NA	NA	125739787	125757160	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_125739952_125740248_125740354_125742393_125742509_125751245_125751377_125755506
transcript_93496.nic	chr8	+	532	2	ISM	ENSMUSG00000056820.8	ENSMUST00000212603.2	2169	5	-101	16645	-49	-16645	5prime_fragment	FALSE	canonical	3	396	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTATTCTAAACATTCCG	5145	False	NA	NA	False	NA	NA	NA	125739686	125740515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr8_+_125739952_125740248
transcript_935.nnic	chr1	+	1034	4	NNC	ENSMUSG00000099498.2	novel	288	4	NA	NA	1058	15825	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4.10960933531265	265	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTTGTGTGTGAAGAACAA	NA	False	NA	NA	False	AATAAA	-21	NA	13140119	13164711	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_13140656_13144917_13145004_13148829_13148887_13164356
transcript_93505.known	chr8	+	1155	5	FSM	ENSMUSG00000031851.15	ENSMUST00000034313.13	1155	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	22.4388056723169	839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGGAGTCCTTGTGTGGG	NA	False	NA	23	True	AATAAA	-31	NA	126460941	126474974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_126461089_126462806_126462970_126464061_126464159_126471974_126472185_126474436
transcript_93507.known	chr8	+	1497	4	FSM	ENSMUSG00000031851.15	ENSMUST00000065135.12	1497	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	41.4273125150814	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCATGTCTAATTAGTTTA	NA	False	NA	NA	False	ACTAAA	-15	NA	126460976	126465918	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_126461089_126462806_126462970_126464061_126464159_126464793
transcript_93510.nic	chr8	+	1043	4	NIC	ENSMUSG00000031851.15	novel	1155	5	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	47.2181697607558	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGGAGTCCTTGTGTGGG	NA	False	NA	23	True	AATAAA	-31	NA	126460956	126474974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_126461089_126462806_126462970_126471974_126472185_126474436
transcript_93514.known	chr8	-	7236	34	FSM	ENSMUSG00000060212.14	ENSMUST00000047239.13	7236	34	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_21	3.44442963354735	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGTCTGTCTACTGTCC	NA	False	NA	NA	False	ATTAAA	-14	NA	126625056	126478246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_126479052_126480110_126480560_126485850_126486042_126487446_126487722_126488262_126488494_126489543_126489689_126494955_126495078_126498715_126498950_126500540_126500795_126512010_126512227_126515232_126515292_126528199_126528330_126534738_126534848_126542399_126542578_126545407_126545550_126553657_126553809_126554781_126554875_126564675_126564773_126566322_126566433_126577021_126577114_126577758_126577870_126581928_126582101_126587692_126587726_126587845_126588000_126589824_126589971_126592661_126592798_126601965_126602060_126604183_126604330_126605140_126605289_126613672_126614933_126616377_126616415_126617773_126617895_126618565_126618772_126624667
transcript_93515.known	chr8	+	1309	4	FSM	ENSMUSG00000033998.10	ENSMUST00000212831.2	1309	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	57.0438427878066	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTGTGGTTTATTACAA	NA	False	NA	19	True	AATAAA	-16	NA	126722174	126757422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_126722554_126751750_126752147_126756230_126756432_126757089
transcript_93516.known	chr8	+	2235	3	FSM	ENSMUSG00000033998.10	ENSMUST00000046765.10	2235	3	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_2	9	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTGGTTTATTACAACT	NA	False	NA	21	True	AATAAA	-18	NA	126721908	126757424	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_126722554_126751750_126752147_126756230
transcript_93517.known	chr8	+	564	3	FSM	ENSMUSG00000051671.8	ENSMUST00000211868.2	564	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	118	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTATTTTCCTTTCCCC	NA	False	NA	-81	True	TATAAA	-21	NA	127149266	127152084	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_127149290_127149371_127149570_127151741
transcript_93520.known	chr8	-	6383	30	FSM	ENSMUSG00000090290.3	ENSMUST00000170518.3	6383	30	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_27	8.4550992852775	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTTATATAATGATTTTA	NA	False	NA	-19	True	AATAAA	-21	NA	127201804	127152067	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_127153880_127154161_127154299_127154556_127154682_127154813_127155006_127155619_127155792_127157560_127157643_127160586_127160784_127161536_127161624_127163441_127163592_127165541_127165653_127167492_127167614_127170668_127170741_127170873_127171065_127173778_127173968_127174059_127174322_127174951_127175167_127177402_127177565_127178971_127179070_127179528_127179702_127180537_127180635_127182807_127182944_127183215_127183306_127184402_127184500_127185775_127185912_127188076_127188175_127189921_127189975_127193772_127193922_127196757_127196828_127198040_127198139_127200993
transcript_93522.known	chr8	+	747	2	FSM	ENSMUSG00000051671.8	ENSMUST00000059093.7	747	2	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_1	0	1733	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTGCGTGCTTCTGGCA	NA	False	NA	7	True	AATAAA	-18	NA	127149253	127152172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_127149570_127151741
transcript_93532.known	chr8	-	458	3	FSM	ENSMUSG00000093904.3	ENSMUST00000212771.2	458	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	2520	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAATTTAACAGTTAGC	NA	False	NA	NA	False	GATAAA	-9	NA	127672594	127661735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_127661810_127663789_127663933_127672353
transcript_93534.known	chr8	-	4902	5	FSM	ENSMUSG00000093904.3	ENSMUST00000179857.3	4902	5	0	0	0	0	multi-exon	FALSE	canonical	3	5050	junction_1	881.47603484156	9791	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTGTCTTTCTATTTCA	NA	False	NA	-3	True	NA	NA	NA	127672590	127657416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_127661810_127663789_127663933_127666621_127666704_127667928_127667976_127672353
transcript_93538.known	chr8	-	3424	11	FSM	ENSMUSG00000033931.10	ENSMUST00000045994.8	3424	11	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_8	10.5470374987482	560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCTTAGTGTAATTTCTT	NA	False	NA	0	True	ATTAAA	-29	NA	127697821	127673921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_127676294_127677449_127677569_127678051_127678092_127679913_127679978_127680115_127680200_127686291_127686336_127688661_127688722_127692131_127692373_127696732_127696879_127697487_127697660_127697739
transcript_93542.known	chr8	-	1509	10	FSM	ENSMUSG00000033931.10	ENSMUST00000212618.2	1509	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	55.208694967369	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAAGTGTTCAAATGGTCA	NA	False	NA	-11	True	AATAAA	-21	NA	127697820	127675775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_127676294_127677449_127677569_127678051_127678092_127679913_127679978_127680115_127680200_127686291_127686336_127692131_127692373_127696732_127696879_127697487_127697660_127697739
transcript_93550.known	chr8	+	746	4	FSM	ENSMUSG00000025812.19	ENSMUST00000159940.2	746	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	28.2410261066335	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-35	NA	128306204	128337329	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_128306285_128319541_128319663_128329539_128329668_128336912
transcript_93553.known	chr8	+	3815	16	FSM	ENSMUSG00000025809.16	ENSMUST00000090006.12	3815	16	0	0	0	0	multi-exon	TRUE	canonical	3	487	junction_6	37.7685348169905	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTTTTGGCTCTGTATT	NA	False	NA	16	True	AATAAA	-22	NA	129412134	129459681	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_129412441_129431893_129431961_129433554_129433641_129436733_129436957_129439688_129439860_129440407_129440647_129442602_129442759_129443687_129443784_129444065_129444156_129446472_129446614_129446755_129446956_129448864_129449104_129449290_129449514_129450676_129450910_129452500_129452668_129458503
transcript_93554.known	chr8	+	651	4	FSM	ENSMUSG00000025809.16	ENSMUST00000135281.2	651	4	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_1	28.1582827759238	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGAGATCTGCTTGTCTC	NA	False	NA	NA	False	NA	NA	NA	129412350	129437141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_129412441_129431893_129431961_129433554_129433641_129436733
transcript_93555.known	chr8	-	1776	5	FSM	ENSMUSG00000071302.11	ENSMUST00000190157.7	1776	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	25.7584937447825	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGAACAGAAAATATGGTT	NA	False	NA	NA	False	CATAAA	-13	NA	129960527	129942834	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_129944231_129946582_129946633_129948024_129948086_129948304_129948432_129960385
transcript_93556.known	chr8	-	413	5	FSM	ENSMUSG00000071302.11	ENSMUST00000188757.7	413	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	28.6301851199045	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCATTATGCTATGTTTAA	NA	False	NA	NA	False	NA	NA	NA	129960849	129944115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_129944231_129946582_129946633_129948024_129948086_129948304_129948432_129960789
transcript_93558.known	chr8	-	2337	4	FSM	ENSMUSG00000071302.11	ENSMUST00000186619.7	2337	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	18.4451137763426	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGTGCAGAAGATCATGTG	NA	False	NA	NA	False	NA	NA	NA	129960499	129944597	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_129946633_129948024_129948086_129948304_129948432_129960385
transcript_93559.known	chr8	-	343	4	FSM	ENSMUSG00000071302.11	ENSMUST00000189965.2	343	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	25.9358182185692	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGAACGTTACAATCATC	NA	False	NA	NA	False	NA	NA	NA	129960887	129946575	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_-_129946633_129948024_129948086_129948304_129948432_129960789
transcript_93563.nnic	chr8	-	3692	3	NIC	ENSMUSG00000071302.11	novel	1776	5	NA	NA	0	-309	intron_retention	FALSE	canonical	3	10	junction_2	29	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGGCTGGTTATTTGATC	NA	False	NA	NA	False	AATAAA	-16	NA	129960527	129943143	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_-_129946633_129948024_129948086_129960385
transcript_93565.nnic	chr8	+	1106	5	NIC	ENSMUSG00000110605.2	novel	1134	4	NA	NA	-168	-411	combination_of_known_splicesites	FALSE	canonical	3	9	junction_2	15.1657508881031	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATGTGGTAAAGCTTTCA	NA	False	NA	NA	False	NA	NA	NA	129989953	130008914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr8_+_129990206_129993965_129994181_130007503_130007631_130007817_130007879_130008463
transcript_93567.known	chr8	+	1134	4	FSM	ENSMUSG00000110605.2	ENSMUST00000212180.2	1134	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	15.5777619273972	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGTGATCAGTGTGTTA	NA	False	NA	NA	False	NA	NA	NA	129990121	130009325	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_129990206_130007503_130007631_130007817_130007879_130008463
transcript_93568.nnic	chr8	+	2993	4	NNC	ENSMUSG00000110605.2	novel	1134	4	NA	NA	-78	2274	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_3	15.5777619273972	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTCGTGGTATCTTTTC	NA	False	NA	NA	False	NA	NA	NA	129990043	130011599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr8_+_129990206_130007503_130007631_130007817_130007879_130008956
transcript_93569.known	chr8	+	3767	3	FSM	ENSMUSG00000110605.2	ENSMUST00000212145.2	3767	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	4.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGTCTCTCGTGATTCTT	NA	False	NA	NA	False	NA	NA	NA	129990128	129998349	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr8_+_129990206_129993965_129994181_129994874
transcript_93570.known	chr9	+	681	5	FSM	ENSMUSG00000095547.2	ENSMUST00000099047.4	681	5	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATTCCATGTCCTACAGT	1184	False	NA	NA	False	NA	NA	NA	3020154	3021593	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_3020221_3020224_3020319_3020785_3021175_3021254_3021262_3021468
transcript_93575.nnic	chr9	-	856	5	NNC	ENSMUSG00000042360.13	novel	1128	4	NA	NA	-32	-395	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	4.41588043316392	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGGTTCAGAAGACCTTC	NA	False	NA	NA	False	AATAAA	-22	NA	3199831	3190665	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_3190806_3192311_3192413_3192819_3193049_3197276_3197368_3199536
transcript_93577.known	chr9	-	1128	4	FSM	ENSMUSG00000042360.13	ENSMUST00000188577.2	1128	4	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_3	6.12825877028341	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCAGTGTCAGTCTCAG	NA	False	NA	NA	False	NA	NA	NA	3199799	3190270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_3190806_3192311_3192413_3192819_3193049_3199536
transcript_93582.known	chr9	+	7674	12	FSM	ENSMUSG00000025899.15	ENSMUST00000211933.2	7674	12	0	0	0	0	multi-exon	FALSE	canonical	2	35	junction_1	12.2683493875181	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTCATAGTATTTTCT	-8	True	NA	NA	False	NA	NA	NA	3335477	3391154	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_3335595_3338455_3338592_3343014_3343253_3344587_3344720_3345780_3345877_3347803_3347909_3349419_3349491_3359483_3359591_3367863_3368016_3369657_3369915_3382693_3382844_3385041
transcript_93587.known	chr9	+	3603	12	FSM	ENSMUSG00000025899.15	ENSMUST00000053407.13	3603	12	0	0	0	0	multi-exon	FALSE	canonical	2	19	junction_1	15.6162661540793	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAATAATTAAAAATA	-8	True	NA	NA	False	NA	NA	NA	3335477	3386929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_3335749_3338455_3338592_3343014_3343253_3344587_3344720_3345780_3345877_3347803_3347909_3349419_3349491_3359483_3359591_3367863_3368016_3369657_3369915_3382693_3382844_3385041
transcript_93593.known	chr9	+	852	3	FSM	ENSMUSG00000025899.15	ENSMUST00000211884.2	852	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	10	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AACAAAAAAAAAAAAAAAAA	-13	True	NA	NA	False	NA	NA	NA	3335472	3343608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_3335595_3338455_3338592_3343014
transcript_93594.known	chr9	+	2256	11	FSM	ENSMUSG00000025899.15	ENSMUST00000165105.2	2256	11	0	0	0	0	multi-exon	FALSE	canonical	2	45	junction_5	9.88989383158384	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACTTTTGTGTTAAAAT	2925	False	NA	NA	False	NA	NA	NA	3338444	3385842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_3338592_3343014_3343253_3344587_3344720_3345780_3345877_3347803_3347909_3349419_3349491_3359483_3359591_3367863_3368016_3369657_3369915_3382693_3382844_3385041
transcript_93598.known	chr9	+	4446	18	FSM	ENSMUSG00000025898.7	ENSMUST00000027027.7	4446	18	0	0	0	0	multi-exon	TRUE	canonical	3	200	junction_7	32.0504576240346	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCGATTATCTTGTATTTTA	NA	False	NA	-51	True	NA	NA	NA	3403591	3479236	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_3404191_3409965_3410077_3411328_3411452_3417868_3417983_3418655_3418776_3421285_3421377_3428667_3428784_3430437_3431088_3441054_3441146_3442960_3443048_3447236_3447354_3450013_3450152_3454539_3454753_3456732_3456850_3458733_3458890_3460050_3460132_3475482_3475585_3477816
transcript_93611.nnic	chr9	+	599	4	NNC	ENSMUSG00000025898.7	novel	2283	8	NA	NA	-48	14956	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	141.238175512934	150	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATTTGTCTTAGCTCCGT	-5	True	NA	NA	False	NA	NA	NA	3404039	3494192	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_3404191_3409965_3410077_3411328_3411452_3493978
transcript_93613.known	chr9	+	2085	3	FSM	ENSMUSG00000025898.7	ENSMUST00000212644.2	2085	3	0	0	0	0	multi-exon	FALSE	canonical	3	277	junction_2	20.5	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGGTTT	9	True	NA	NA	False	NA	NA	NA	3404087	3413199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_3404191_3409965_3410077_3411328
transcript_93616.nic	chr9	+	472	2	ISM	ENSMUSG00000025898.7	ENSMUST00000212644.2	2085	3	-48	2913	-48	-2913	5prime_fragment	FALSE	canonical	3	318	junction_1	0	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAACCAAAATACTATT	-5	True	NA	NA	False	NA	NA	NA	3404039	3410286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_3404191_3409965
transcript_93617.known	chr9	+	2283	8	FSM	ENSMUSG00000025898.7	ENSMUST00000212128.2	2283	8	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_7	39.8200031775642	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAAAAAATTA	9	True	NA	NA	False	AATGAA	-21	NA	3404087	3431942	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_3404191_3409965_3410077_3411328_3411452_3417868_3417983_3418655_3418776_3421285_3421377_3428667_3428784_3430437
transcript_93623.known	chr9	-	2810	6	FSM	ENSMUSG00000025894.12	ENSMUST00000212066.2	2810	6	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_5	303.486671865504	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTTTAGGGCTTGACATG	-1	True	NA	NA	False	AATAAA	-44	NA	4309469	4294793	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_4296840_4299297_4299370_4302469_4302632_4303093_4303216_4308693_4308920_4309287
transcript_93637.known	chr9	-	2519	5	FSM	ENSMUSG00000025894.12	ENSMUST00000212897.2	2519	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_3	415.72677325378	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAAAATTCAGTAAAAGTT	-3	True	NA	-33	True	ATTAAA	-13	NA	4309471	4294964	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_4296840_4299297_4299370_4302469_4302632_4308693_4308920_4309287
transcript_93645.nnic	chr9	-	864	4	NIC	ENSMUSG00000025894.12	novel	2843	6	NA	NA	-167	-1630	combination_of_known_splicesites	FALSE	canonical	3	71	junction_3	376.029549666276	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTATTTAACAAAACATTT	NA	False	NA	NA	False	AATAAA	-19	NA	4309638	4296594	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_4296840_4299297_4299370_4302469_4302632_4309253
transcript_93647.known	chr9	-	2843	6	FSM	ENSMUSG00000025894.12	ENSMUST00000051589.9	2843	6	0	0	0	0	multi-exon	FALSE	canonical	3	643	junction_4	99.1576522513517	2516	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTAGGGCTTGACATGT	1	True	NA	NA	False	AATAAA	-45	NA	4309467	4294792	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_4296840_4299297_4299370_4302469_4302632_4303093_4303216_4308693_4308920_4309253
transcript_93651.known	chr9	+	2313	4	FSM	ENSMUSG00000025893.9	ENSMUST00000212221.2	2313	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	18.4571575998762	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAACGATGGAAAAAAGTCT	0	True	NA	NA	False	AATAAA	-27	NA	4309834	4331711	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_4309935_4313701_4313807_4316826_4317072_4329848
transcript_93652.known	chr9	+	2231	3	FSM	ENSMUSG00000025893.9	ENSMUST00000049648.9	2231	3	0	0	0	0	multi-exon	TRUE	canonical	3	30	junction_1	14.5	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAGAAGGGAAAATTTTCT	-2	True	NA	NA	False	ATTAAA	-18	NA	4309832	4331732	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_4309935_4316826_4317072_4329848
transcript_93656.known	chr9	+	2800	3	FSM	ENSMUSG00000041124.12	ENSMUST00000212075.2	2800	3	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	13	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCTGTCTGAAAGTTTA	-5	True	NA	14	True	AATAAA	-1	NA	4376561	4386870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_4376624_4383536_4384143_4384738
transcript_93658.known	chr9	+	2731	2	FSM	ENSMUSG00000041124.12	ENSMUST00000047173.10	2731	2	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	0	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATAAATTTTCCTGTCT	13	False	NA	5	True	ATTAAA	-13	NA	4383534	4386861	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_4384143_4384738
transcript_93659.known	chr9	+	2421	8	FSM	ENSMUSG00000032002.11	ENSMUST00000215683.2	2421	8	0	0	0	0	multi-exon	FALSE	canonical	3	895	junction_7	57.310824564343	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCATTTGCCTTCTTAATA	-21	True	NA	NA	False	AGTAAA	-20	NA	7184519	7208205	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_7184883_7186767_7186860_7188745_7188817_7189161_7189254_7203262_7203372_7203450_7203556_7205297_7205401_7206719
transcript_93660.known	chr9	+	1122	7	FSM	ENSMUSG00000032002.11	ENSMUST00000034499.10	1122	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_6	367.438165621857	2433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTCCGTTGAGTGTCA	10	True	NA	24	True	AATAAA	-32	NA	7184550	7207040	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_7184883_7186767_7186860_7188745_7188817_7189161_7189254_7203262_7203372_7203450_7203556_7206719
transcript_93666.nnic	chr9	+	588	2	Genic_Genomic	ENSMUSG00000074516.7	novel	480	1	NA	NA	-53	133	multi-exon	FALSE	canonical	0	0	junction_1	0	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAAATCAGTCCAGTC	-3	True	NA	NA	False	AATAAA	-30	NA	7751672	7752338	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr9_+_7752092_7752169
transcript_93667.known	chr9	+	480	1	FSM	ENSMUSG00000074516.7	ENSMUST00000213318.2	480	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	480	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAAAAGGCTCCTGCCAGT	28	False	NA	NA	False	NA	NA	NA	7751725	7752205	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_7751700_7752200
transcript_93670.known	chr9	+	2907	5	FSM	ENSMUSG00000050912.16	ENSMUST00000052865.16	2907	5	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_1	14.5086181285469	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTAGTGTTTTGTTGAA	NA	False	NA	16	True	AATAAA	-19	NA	7764041	7794334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_7764314_7768290_7768342_7790842_7791110_7791311_7791466_7792171
transcript_93675.known	chr9	-	3331	8	FSM	ENSMUSG00000057367.13	ENSMUST00000190341.7	3331	8	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_2	22.0352222681815	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGATGTGATTCATGAGA	-20	True	NA	-1	True	AATAAA	-21	NA	7837058	7818227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_7818945_7819021_7819064_7819307_7819563_7820974_7821221_7825615_7825665_7826931_7827011_7833505_7835381_7836990
transcript_93676.nnic	chr9	-	3171	7	NIC	ENSMUSG00000057367.13	novel	3331	8	NA	NA	-88	0	combination_of_known_splicesites	FALSE	canonical	3	27	junction_2	57.8234861933761	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGATGTGATTCATGAGA	NA	False	NA	-1	True	AATAAA	-21	NA	7837153	7818227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_7818945_7819021_7819064_7820974_7821221_7825615_7825665_7826931_7827011_7833505_7835381_7836990
transcript_93677.known	chr9	-	1316	1	FSM	ENSMUSG00000057367.13	ENSMUST00000189935.2	1316	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAAAAAAGTTCA	-26	True	NA	NA	False	NA	NA	NA	7837064	7835748	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_7835700_7837100
transcript_93678.known	chr9	-	2667	9	FSM	ENSMUSG00000032000.18	ENSMUST00000013949.15	2667	9	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	6.89202437604511	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATGCTGGGCAGGTTTAT	6	True	NA	NA	False	AATAAA	-34	NA	7873025	7848699	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_7849458_7849672_7849715_7850920_7851173_7854367_7854608_7857390_7857440_7858701_7858781_7860263_7860364_7860463_7861409_7872823
transcript_93680.known	chr9	+	545	3	FSM	ENSMUSG00000110161.2	ENSMUST00000211167.2	545	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTAAAAGTGGCTTCATG	NA	False	NA	NA	False	NA	NA	NA	8004830	8009270	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_8004885_8005927_8006106_8008957
transcript_93682.known	chr9	-	1592	7	FSM	ENSMUSG00000053070.6	ENSMUST00000065291.2	1592	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	2.38047614284762	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAATCGTCAGTTAAAAA	9	True	NA	NA	False	GATAAA	-30	NA	8042824	8021672	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_8022546_8023900_8023968_8025962_8026136_8027101_8027269_8037460_8037537_8042409_8042492_8042670
transcript_93687.known	chr9	-	1868	16	FSM	ENSMUSG00000050730.18	ENSMUST00000182617.2	1868	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	16.9503851152579	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGGACTCCCTTGAGTG	9	False	NA	NA	False	NA	NA	NA	9239106	9011238	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_9011443_9015300_9015360_9016144_9016230_9016964_9017040_9018204_9018268_9029423_9029464_9030794_9030874_9033471_9033582_9035509_9035611_9046505_9046636_9048888_9048994_9059049_9059161_9115690_9115763_9155303_9155366_9180027_9180124_9238630
transcript_93688.known	chr9	+	2723	4	FSM	ENSMUSG00000079084.13	ENSMUST00000215735.2	2723	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	15.2825245151302	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATAGAAAAATTTCTCT	NA	False	NA	NA	False	AATAAA	-8	NA	13246636	13254721	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_13246677_13248883_13248968_13251695_13252424_13252850
transcript_93689.known	chr9	+	2369	3	FSM	ENSMUSG00000079084.13	ENSMUST00000169961.3	2369	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	5	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGTTTTACTGTTTCATC	NA	False	NA	NA	False	NA	NA	NA	13246609	13254424	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_13246677_13251695_13252424_13252850
transcript_93690.nnic	chr9	+	2260	3	NNC	ENSMUSG00000031925.18	novel	6404	5	NA	NA	39456	188	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_2	1	13	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAGGAATGAAAGTGTGAA	NA	False	NA	NA	False	NA	NA	NA	13613211	13618829	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_13613418_13613539_13613652_13616887
transcript_93692.known	chr9	+	3088	16	FSM	ENSMUSG00000031918.17	ENSMUST00000155679.8	3088	16	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_2	100.813138473559	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGTCCACAGTTGTCTA	NA	False	NA	27	True	ATTAAA	-16	NA	13660476	13717777	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_13660697_13671713_13671785_13693572_13693679_13697147_13697224_13699876_13699972_13700335_13700447_13703274_13703377_13704444_13704529_13706532_13706683_13707253_13707443_13710445_13710632_13711171_13711379_13713210_13713304_13714720_13714835_13716101_13716279_13716670
transcript_93693.known	chr9	+	3788	15	FSM	ENSMUSG00000031918.17	ENSMUST00000034396.14	3788	15	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_2	44.4939803312121	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGTCCACAGTTGTCTA	NA	False	NA	27	True	ATTAAA	-16	NA	13659705	13717777	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_13660697_13693572_13693679_13697147_13697224_13699876_13699972_13700335_13700447_13703274_13703377_13704444_13704529_13706532_13706683_13707253_13707443_13710445_13710632_13711171_13711379_13713210_13713304_13714720_13714835_13716101_13716279_13716670
transcript_93697.known	chr9	+	617	4	FSM	ENSMUSG00000031918.17	ENSMUST00000156801.8	617	4	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_3	108.542874273513	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTTGGGAGGCAGCGTCT	NA	False	NA	NA	False	ATTAAA	-24	NA	13660614	13697471	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_13660697_13693572_13693679_13694901_13695007_13697147
transcript_93700.known	chr9	+	442	3	FSM	ENSMUSG00000031918.17	ENSMUST00000134530.2	442	3	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_2	26.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTTGGGAGGCAGCGTCT	NA	False	NA	NA	False	ATTAAA	-24	NA	13660684	13697471	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_13660697_13693572_13693679_13697147
transcript_93704.known	chr9	-	2523	11	FSM	ENSMUSG00000031922.13	ENSMUST00000034398.12	2523	11	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_4	39.1587793476763	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGCTAACAAAGGCTTTAT	NA	False	NA	NA	False	AATAAA	-26	NA	13738403	13719089	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_13720137_13721155_13721301_13721922_13722159_13723928_13724007_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
transcript_93711.known	chr9	-	2262	10	FSM	ENSMUSG00000031922.13	ENSMUST00000147115.8	2262	10	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_3	63.5314639653475	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAGCAGTTTTTAAACT	NA	False	NA	NA	False	TATAAA	-17	NA	13738251	13719120	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_13720137_13721155_13721301_13721922_13722159_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
transcript_93712.known	chr9	-	2173	10	FSM	ENSMUSG00000031922.13	ENSMUST00000142494.8	2173	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	82.7754660378169	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTAACAAAGGCTTTATTT	NA	False	NA	NA	False	AATAAA	-28	NA	13738287	13719087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_13720137_13721155_13721301_13723928_13724007_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
transcript_93721.known	chr9	-	1255	7	FSM	ENSMUSG00000031922.13	ENSMUST00000144484.2	1255	7	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_6	93.9201788754685	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGTCAAAACCACCAGAAA	NA	False	NA	NA	False	AATAAA	-7	NA	13738349	13724727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13737837
transcript_93722.nic	chr9	-	1299	7	ISM	ENSMUSG00000031922.13	ENSMUST00000034398.12	2523	11	-304	5638	-304	0	5prime_fragment	FALSE	canonical	3	207	junction_3	26.5	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGTCAAAACCACCAGAAA	NA	False	NA	NA	False	AATAAA	-7	NA	13738707	13724727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_-_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
transcript_93731.known	chr9	+	3760	11	FSM	ENSMUSG00000037808.14	ENSMUST00000156680.2	3760	11	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_8	54.6652540467892	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATGACTGTGATTTGGAT	NA	False	NA	NA	False	AATAAA	-35	NA	13739011	13757837	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_13739358_13740055_13740121_13741020_13741076_13742277_13742434_13744267_13744468_13747180_13747229_13747398_13747480_13747954_13748013_13748132_13748269_13750935_13751038_13755324
transcript_93733.known	chr9	+	3702	10	FSM	ENSMUSG00000037808.14	ENSMUST00000059579.12	3702	10	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_7	15.6165470962654	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATGACTGTGATTTGGAT	NA	False	NA	NA	False	AATAAA	-35	NA	13739011	13757837	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_13739358_13740055_13740121_13741020_13741076_13742277_13742434_13744267_13744468_13747180_13747229_13747398_13747480_13748132_13748269_13750935_13751038_13755324
transcript_93737.known	chr9	+	9125	10	FSM	ENSMUSG00000032009.9	ENSMUST00000208222.2	9125	10	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_6	6.49976257875985	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCTTTCTTTCTTTAAT	NA	False	NA	9	True	AATAAA	-15	NA	14187596	14244397	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_14187926_14217494_14217561_14219756_14219955_14221543_14221727_14225791_14226029_14227361_14227537_14231590_14231710_14232367_14232559_14233858_14234004_14236915
transcript_93739.known	chr9	+	831	7	FSM	ENSMUSG00000004096.10	ENSMUST00000213913.2	831	7	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	320.421423891863	644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGATCAATTTGACTTTTT	NA	False	NA	13	True	ATTAAA	-13	NA	14411942	14421661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_14412040_14413211_14413351_14414109_14414223_14414893_14414983_14416128_14416237_14419146_14419266_14421495
transcript_93745.known	chr9	+	1111	7	FSM	ENSMUSG00000004096.10	ENSMUST00000004200.9	1111	7	0	0	0	0	multi-exon	FALSE	canonical	3	777	junction_1	58.5484130157826	7143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTATACAGCTTATAAAAAG	NA	False	NA	3	True	AATAAA	-27	NA	14411912	14421873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_14412078_14413211_14413351_14414109_14414223_14414893_14414983_14416128_14416237_14419146_14419266_14421495
transcript_93746.known	chr9	+	526	2	FSM	ENSMUSG00000004096.10	ENSMUST00000216619.2	526	2	0	0	0	0	multi-exon	FALSE	canonical	3	958	junction_1	0	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTTTGCTACAATTTAT	NA	False	NA	-12	True	AATAAA	-31	NA	14419102	14421858	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_14419266_14421495
transcript_93747.known	chr9	+	518	2	FSM	ENSMUSG00000111085.2	ENSMUST00000214920.2	518	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCGTGTGTATTTGTATGGA	NA	False	NA	NA	False	NA	NA	NA	14574317	14576395	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_14574497_14576056
transcript_93748.known	chr9	-	688	4	FSM	ENSMUSG00000031927.10	ENSMUST00000060330.5	688	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACAGTTCTTCTGTTTCAA	NA	False	NA	NA	False	ATTAAA	-16	NA	14682326	14669486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_14669752_14672900_14673027_14678152_14678258_14682134
transcript_93750.known	chr9	+	3286	20	FSM	ENSMUSG00000031928.16	ENSMUST00000034405.11	3286	20	0	0	0	0	multi-exon	TRUE	canonical	3	154	junction_1	46.9081733954962	297	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAAATAATCTCATTCCCT	NA	False	NA	9	True	AATAAA	-27	NA	14695949	14745942	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_14696054_14696726_14696825_14698173_14698307_14701868_14702030_14707066_14707155_14708338_14708481_14710851_14710967_14714059_14714246_14716651_14716824_14721099_14721181_14723125_14723253_14726463_14726568_14728091_14728266_14730711_14730775_14736436_14736654_14737830_14737912_14740652_14740712_14742192_14742258_14743936_14744013_14744902
transcript_93759.known	chr9	-	1037	3	FSM	ENSMUSG00000031931.5	ENSMUST00000216037.2	1037	3	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_2	53	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGGTATTTGGGTACATC	NA	False	NA	NA	False	NA	NA	NA	14695822	14692284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_14692908_14693910_14694259_14695756
transcript_93760.known	chr9	-	2679	3	FSM	ENSMUSG00000031931.5	ENSMUST00000216372.2	2679	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	58.5	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACAGTTGTTCTTGTCA	NA	False	NA	NA	False	NA	NA	NA	14696152	14690913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_14692908_14693910_14694259_14695815
transcript_93768.known	chr9	-	3207	2	FSM	ENSMUSG00000031931.5	ENSMUST00000214456.2	3207	2	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACCAGTGTTTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	14695846	14691082	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_14694259_14695815
transcript_93769.known	chr9	-	1753	2	FSM	ENSMUSG00000031931.5	ENSMUST00000034406.4	1753	2	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAACAAATCAAAACAA	NA	False	NA	NA	False	NA	NA	NA	14694260	14691504	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_14692908_14693910
transcript_93770.known	chr9	-	416	2	FSM	ENSMUSG00000031931.5	ENSMUST00000214979.2	416	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTCTGTGGACTTTTCT	NA	False	NA	NA	False	AGTAAA	-42	NA	14695818	14694125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_14694259_14695535
transcript_93771.known	chr9	+	428	2	FSM	ENSMUSG00000090023.2	ENSMUST00000159268.2	428	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCAGAATAAATGTTCCCC	NA	False	NA	NA	False	NA	NA	NA	14756908	14759131	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_14757143_14758937
transcript_93774.nic	chr9	-	1510	5	NIC	ENSMUSG00000031934.15	novel	5732	5	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_4	28.0223125384041	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACACCCTCTGTGCCCTTA	NA	False	NA	-4	True	AATAAA	-21	NA	14955104	14917080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_14917514_14918656_14919316_14921331_14921553_14932677_14932818_14955047
transcript_93775.known	chr9	-	5732	5	FSM	ENSMUSG00000031934.15	ENSMUST00000164273.9	5732	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	8.13557004763649	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGTTGTCTTTCTTGCTG	NA	False	NA	NA	False	AATAAA	-19	NA	14956774	14913423	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_14917514_14918656_14919316_14921331_14921553_14932677_14932818_14956152
transcript_93777.known	chr9	+	1991	4	FSM	ENSMUSG00000031937.8	ENSMUST00000034413.8	1991	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_3	3.68178700572909	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAAGCAAGTTTGTTTTTC	NA	False	NA	NA	False	ATTAAA	-1	NA	15150340	15170712	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_15150655_15168525_15168853_15168946_15169088_15169503
transcript_93782.known	chr9	-	3964	12	FSM	ENSMUSG00000031935.10	ENSMUST00000034411.10	3964	12	0	0	0	0	multi-exon	TRUE	canonical	3	139	junction_7	15.3563726777577	393	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTGGGCATAGTGGCATA	NA	False	NA	NA	False	NA	NA	NA	15191227	15171646	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_15173735_15174899_15175060_15176647_15176766_15178709_15178848_15181638_15181824_15182906_15183038_15183802_15183956_15185580_15185666_15185744_15185882_15187141_15187362_15188852_15189020_15190845
transcript_93807.known	chr9	-	2650	9	FSM	ENSMUSG00000031938.16	ENSMUST00000178977.9	2650	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	3.64005494464026	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTCTTTTCTTTC	NA	False	NA	-7	True	AATAAA	-15	NA	15217463	15194634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_15196288_15198651_15198769_15201962_15202113_15203295_15203473_15205727_15205830_15205981_15206056_15209138_15209238_15212662_15212810_15217332
transcript_93816.known	chr9	-	1750	8	FSM	ENSMUSG00000031938.16	ENSMUST00000216955.2	1750	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_6	7.40104791256493	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAGAAAAGAAACAGCA	NA	False	NA	NA	False	NA	NA	NA	15217426	15195398	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_15196288_15198651_15198769_15201962_15202113_15203295_15203473_15205727_15205830_15205981_15206056_15212662_15212810_15217332
transcript_93840.known	chr9	+	629	4	FSM	ENSMUSG00000031939.17	ENSMUST00000215124.2	629	4	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	198.269737703183	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTTTTTTTTTTAAATG	9116	False	NA	NA	False	AAGAAA	-35	NA	15217553	15220211	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820
transcript_93849.known	chr9	+	612	3	FSM	ENSMUSG00000031939.17	ENSMUST00000216109.2	612	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	247	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAATATGAGCCAAAATTA	9187	False	NA	25	True	TTTAAA	-29	NA	15217624	15220029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_15217934_15219023_15219118_15219820
transcript_93853.known	chr9	+	1148	7	FSM	ENSMUSG00000031939.17	ENSMUST00000034415.6	1148	7	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_6	190.157317912184	961	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTCTTAAGTGCTTAGCC	9072	False	NA	5	True	AATAAA	-16	NA	15217509	15223400	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15223204
transcript_93854.known	chr9	+	1216	12	FSM	ENSMUSG00000031939.17	ENSMUST00000213763.2	1216	12	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_9	145.029663537447	1332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACCTTTTATAGTT	9118	False	NA	-1	True	NA	NA	NA	15217555	15228266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285_15225329_15225526_15225561_15226397_15226428_15226678_15226737_15228184
transcript_93855.known	chr9	+	1005	6	FSM	ENSMUSG00000031939.17	ENSMUST00000164079.9	1005	6	0	0	0	0	multi-exon	FALSE	canonical	3	288	junction_1	106.167791726116	941	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCGTTGCTTGATTTCAGA	9122	False	NA	NA	False	AATAAA	-17	NA	15217559	15223094	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822
transcript_93856.known	chr9	+	4881	8	FSM	ENSMUSG00000031939.17	ENSMUST00000213235.2	4881	8	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_6	149.118224566815	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTTATAGTTTGTATGTA	NA	False	NA	7	True	NA	NA	NA	15219021	15228274	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15225329_15225526_15225561_15226397_15226428_15226678
transcript_93857.known	chr9	+	1210	11	FSM	ENSMUSG00000031939.17	ENSMUST00000216825.2	1210	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_10	180.996160180265	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACCTTTTATAGTT	NA	False	NA	-1	True	NA	NA	NA	15219041	15228266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285_15225329_15225526_15225561_15226397_15226428_15226678_15226773_15228184
transcript_93858.known	chr9	+	353	2	FSM	ENSMUSG00000031939.17	ENSMUST00000214316.2	353	2	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTCTTAAGTGCTTAGCC	NA	False	NA	5	True	AATAAA	-16	NA	15222925	15223400	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_15222992_15223113
transcript_93859.known	chr9	+	2339	11	FSM	ENSMUSG00000031939.17	ENSMUST00000213923.2	2339	11	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_8	135.36502502493	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTTTTATAGTTTGTATG	9118	False	NA	5	True	NA	NA	NA	15217555	15228272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15222992_15224069_15224133_15225285_15225329_15225526_15225561_15226397_15226428_15226678_15226737_15228184
transcript_93860.known	chr9	+	2818	9	FSM	ENSMUSG00000031939.17	ENSMUST00000214221.2	2818	9	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_7	155.777034170638	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACCTTTTATAGTT	9118	False	NA	-1	True	NA	NA	NA	15217555	15228266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15225561_15226397_15226737_15228184
transcript_93861.known	chr9	+	994	3	FSM	ENSMUSG00000058173.13	ENSMUST00000215907.2	994	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	1	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTGGGTGTTTCTCTTGT	NA	False	NA	8	True	AATAAA	-16	NA	15404727	15456553	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_15404926_15436923_15437001_15455834
transcript_93862.known	chr9	+	820	3	FSM	ENSMUSG00000058173.13	ENSMUST00000178999.3	820	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGTGTTTCTCTTGTTTG	NA	False	NA	11	True	AATAAA	-19	NA	15432154	15456556	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_15432176_15436923_15437001_15455834
transcript_93863.known	chr9	+	6539	11	FSM	ENSMUSG00000043885.15	ENSMUST00000061568.9	6539	11	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	2.41039415863879	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGAATGTGTGTTTGCCTC	NA	False	NA	NA	False	AATAAA	-17	NA	15621034	15654657	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_15621134_15630928_15631053_15631995_15632087_15633228_15633318_15634809_15634906_15635816_15635902_15638106_15638335_15639996_15640096_15645432_15645603_15648167_15648338_15649369
transcript_93869.known	chr9	+	5789	11	FSM	ENSMUSG00000001774.9	ENSMUST00000001825.9	5789	11	0	0	0	0	multi-exon	FALSE	canonical	3	795	junction_1	72.6983493622792	1092	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTCTTAAGAGTCTGTGG	8365	False	NA	NA	False	ATTAAA	-22	NA	18203420	18228738	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_18203757_18206595_18206646_18212301_18212359_18213321_18213480_18215578_18215683_18216588_18216648_18220045_18220117_18221128_18221235_18223207_18223328_18223725_18223789_18224073
transcript_93879.known	chr9	+	519	4	FSM	ENSMUSG00000001774.9	ENSMUST00000213605.2	519	4	0	0	0	0	multi-exon	FALSE	canonical	3	795	junction_1	89.2785901919753	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCGTGTATTTTCCTTTG	8546	False	NA	NA	False	TATAAA	-16	NA	18203601	18213578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_18203757_18206595_18206646_18212301_18212359_18213321
transcript_93883.known	chr9	+	659	2	FSM	ENSMUSG00000001774.9	ENSMUST00000216526.2	659	2	0	0	0	0	multi-exon	FALSE	canonical	3	795	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGGCTGTGTGTTTGTTT	8540	False	NA	NA	False	NA	NA	NA	18203595	18207093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_18203757_18206595
transcript_93886.known	chr9	-	2799	19	FSM	ENSMUSG00000043943.15	ENSMUST00000166825.8	2799	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.64147630029935	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGTTAGCATCAAGAAACA	2058	False	NA	NA	False	AATAAA	-17	NA	18297332	18234315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_18234920_18237471_18237565_18238659_18238742_18241930_18242196_18246223_18246315_18250686_18250779_18258749_18258818_18260145_18260210_18262145_18262229_18262331_18262452_18262705_18262792_18274437_18274537_18275416_18275511_18287718_18287906_18289903_18290030_18291207_18291310_18292090_18292278_18296340_18296453_18297088
transcript_93888.known	chr9	+	3988	9	FSM	ENSMUSG00000057551.11	ENSMUST00000208694.2	3988	9	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_2	38.1313519298752	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGGACTGATATTTGTT	NA	False	NA	14	True	AATAAA	-17	NA	19533423	19561027	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_19533582_19540392_19540503_19543629_19543685_19552361_19552551_19553259_19553400_19553893_19554021_19554904_19555001_19556520_19556604_19557997
transcript_9389.known	chr10	+	1813	4	FSM	ENSMUSG00000019897.9	ENSMUST00000020049.9	1813	4	0	0	0	0	multi-exon	FALSE	canonical	3	411	junction_3	54.9201440477192	1357	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGTGTAATAGAAGCGTT	NA	False	NA	NA	False	AATAAA	-18	NA	105676927	105683694	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_105677517_105678402_105678710_105681210_105681311_105682877
transcript_93902.known	chr9	-	608	3	FSM	ENSMUSG00000045519.16	ENSMUST00000143992.3	608	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	0.5	204	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCTTCTTGTCATATATT	NA	False	NA	NA	False	NA	NA	NA	20296473	20263876	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_20264138_20265359_20265546_20296312
transcript_93905.known	chr9	+	2495	1	FSM	ENSMUSG00000110910.2	ENSMUST00000213976.2	2495	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATTTGTACTTTGGTGG	NA	False	NA	NA	False	NA	NA	NA	20296529	20299024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_20296500_20299000
transcript_93906.known	chr9	-	2135	9	FSM	ENSMUSG00000059475.14	ENSMUST00000163348.8	2135	9	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_8	10.295630140987	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAGTGGATGCTGGCAAG	NA	False	NA	NA	False	NA	NA	NA	20404038	20381121	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_20382542_20382994_20383078_20384323_20384405_20386202_20386330_20387691_20387775_20389428_20389551_20397625_20397734_20403681_20403748_20403993
transcript_93912.known	chr9	-	720	8	FSM	ENSMUSG00000059475.14	ENSMUST00000163427.8	720	8	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_3	11.2431384971149	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTGTAGTCAGTACAGAAAA	NA	False	NA	NA	False	NA	NA	NA	20404027	20382426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_20382545_20382994_20383078_20384323_20384405_20387691_20387775_20389428_20389576_20397625_20397734_20403681_20403748_20403993
transcript_93913.known	chr9	-	3557	7	FSM	ENSMUSG00000059475.14	ENSMUST00000115562.9	3557	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	10.4309901522126	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCTTCTAGTTTTATTTG	NA	False	NA	NA	False	NA	NA	NA	20404042	20379844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_20382545_20382994_20383078_20384323_20384405_20386202_20386330_20387691_20387775_20389428_20389551_20403681
transcript_93915.nic	chr9	-	543	3	ISM	ENSMUSG00000059475.14	ENSMUST00000163427.8	720	8	-38	14902	-23	-9603	5prime_fragment	FALSE	canonical	2	5	junction_2	4	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTTGTGTATTTTGTGTA	NA	False	NA	NA	False	AATAAA	-21	NA	20404065	20397328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_-_20397734_20403681_20403748_20403993
transcript_93919.known	chr9	-	2417	9	FSM	ENSMUSG00000059475.14	ENSMUST00000080386.13	2417	9	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_8	9.71387538524146	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAAAAATGTTTTTTCA	NA	False	NA	NA	False	NA	NA	NA	20404038	20380842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_20382545_20382994_20383078_20384323_20384405_20386202_20386330_20387691_20387775_20389428_20389551_20397625_20397734_20403681_20403748_20403993
transcript_93920.known	chr9	-	2266	9	FSM	ENSMUSG00000060510.15	ENSMUST00000068296.8	2266	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_8	12.1140414395857	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATCTGTTGCCACCTTTA	NA	False	NA	NA	False	NA	NA	NA	20432704	20410360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_20411774_20412169_20412250_20413336_20413418_20416347_20416475_20417272_20417362_20418023_20418179_20419314_20419482_20432315_20432416_20432650
transcript_93922.known	chr9	-	6283	9	FSM	ENSMUSG00000060510.15	ENSMUST00000174462.8	6283	9	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_8	12.7156399760295	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTTAATGTTGTTTCTT	NA	False	NA	NA	False	AATAAA	-1	NA	20432713	20406363	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_20411774_20412169_20412250_20413336_20413418_20416347_20416475_20417272_20417362_20418023_20418179_20419314_20419482_20432315_20432416_20432639
transcript_93925.nic	chr9	-	899	2	ISM	ENSMUSG00000060510.15	ENSMUST00000068296.8	2266	9	-216	21426	-207	17	5prime_fragment	FALSE	canonical	3	22	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGATACTGACCCAGTAAGA	NA	False	NA	NA	False	AATACA	-23	NA	20432920	20431786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_-_20432416_20432650
transcript_93926.known	chr9	-	679	2	FSM	ENSMUSG00000060510.15	ENSMUST00000213275.2	679	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	AATACA	-6	NA	20432706	20431803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_20432416_20432639
transcript_93927.known	chr9	+	481	1	FSM	ENSMUSG00000111661.2	ENSMUST00000213332.2	481	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATGTACACAAAGAAATAA	NA	False	NA	NA	False	NA	NA	NA	20466624	20467105	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_20466600_20467100
transcript_93928.known	chr9	+	12974	6	FSM	ENSMUSG00000058192.17	ENSMUST00000115557.10	12974	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	3.8262252939418	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATTGTTGATTAATGAT	NA	False	NA	NA	False	NA	NA	NA	20492620	20516705	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_20492975_20499130_20499220_20499804_20499932_20502108_20502181_20502634_20502718_20504456
transcript_93931.nic	chr9	+	886	5	ISM	ENSMUSG00000058192.17	ENSMUST00000115557.10	12974	6	-9	13836	-9	2785	5prime_fragment	FALSE	canonical	3	29	junction_1	4.06201920231798	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACAAAACCTGTTCTTTAA	NA	False	NA	NA	False	AGTAAA	-22	NA	20492611	20502869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_20492975_20499130_20499220_20499804_20499932_20502108_20502181_20502634
transcript_93933.known	chr9	+	903	1	FSM	ENSMUSG00000058192.17	ENSMUST00000214194.2	903	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20492586	20493489	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_20492600_20493500
transcript_93934.known	chr9	-	1484	1	FSM	ENSMUSG00000111547.2	ENSMUST00000217520.2	1484	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTGTTAAGATTCTTTG	2676	False	NA	NA	False	ATTAAA	-17	NA	20518912	20517428	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_20517400_20518900
transcript_93941.known	chr9	+	489	6	FSM	ENSMUSG00000084786.10	ENSMUST00000160682.8	489	6	0	0	0	0	multi-exon	FALSE	canonical	1	35	junction_1	424.4820844276	12350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGCTGTCATACTTGT	NA	False	NA	18	True	AATAAA	-15	NA	20555366	20558073	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_20555435_20556119_20556190_20556488_20556556_20556701_20556786_20556917_20556956_20557911
transcript_93949.known	chr9	+	505	5	FSM	ENSMUSG00000084786.10	ENSMUST00000162303.8	505	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	467.366558495577	599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGCTGCTGTCATACTT	NA	False	NA	16	True	AATAAA	-13	NA	20556116	20558071	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_20556273_20556488_20556556_20556701_20556786_20556917_20556956_20557911
transcript_93955.known	chr9	-	761	4	FSM	ENSMUSG00000066892.15	ENSMUST00000131343.8	761	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	34.3446583263767	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACCGGGTCACTGAGACCG	NA	False	NA	NA	False	NA	NA	NA	20556054	20550096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_20550495_20553319_20553393_20555490_20555595_20555868
transcript_93956.known	chr9	-	476	3	FSM	ENSMUSG00000066892.15	ENSMUST00000155301.8	476	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	34.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCATAACTTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	20553609	20529413	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_20529707_20553319_20553393_20553499
transcript_93957.known	chr9	-	2086	3	FSM	ENSMUSG00000066892.15	ENSMUST00000086459.6	2086	3	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_2	12	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGTGTTGCACTTATTT	NA	False	NA	-4	True	ATTAAA	-18	NA	20554102	20549084	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_20550495_20553319_20553393_20553499
transcript_93958.known	chr9	-	2056	3	FSM	ENSMUSG00000066892.15	ENSMUST00000086458.10	2056	3	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	23	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGTGTTGCACTTATTT	NA	False	NA	-4	True	ATTAAA	-18	NA	20556063	20549084	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_20550495_20553319_20553393_20555490
transcript_93959.known	chr9	-	1668	3	FSM	ENSMUSG00000066892.15	ENSMUST00000151861.9	1668	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	46.5	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTGTTGCACTTATTTAA	NA	False	NA	-2	True	ATTAAA	-20	NA	20556051	20549082	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_20550495_20553319_20553393_20555868
transcript_93960.known	chr9	+	2511	4	FSM	ENSMUSG00000084786.10	ENSMUST00000154429.9	2511	4	0	0	0	0	multi-exon	FALSE	canonical	3	1046	junction_3	4.78423336480244	595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGCTGCTGTCATACTT	9544	False	NA	16	True	AATAAA	-13	NA	20554173	20558071	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_20556190_20556488_20556786_20556917_20556956_20557911
transcript_93961.known	chr9	+	489	5	FSM	ENSMUSG00000084786.10	ENSMUST00000161882.8	489	5	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_4	473.611127403063	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGCTTTGCTGCTGTC	NA	False	NA	10	True	AATAAA	-7	NA	20556163	20558065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_20556190_20556488_20556556_20556701_20556786_20556917_20556990_20557825
transcript_93962.known	chr9	+	412	5	FSM	ENSMUSG00000084786.10	ENSMUST00000160874.8	412	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	478.321740567999	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGCTGCTGTCATACTT	NA	False	NA	16	True	AATAAA	-13	NA	20556130	20558071	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_20556190_20556488_20556556_20556701_20556790_20556917_20556956_20557911
transcript_93963.known	chr9	+	501	4	FSM	ENSMUSG00000084786.10	ENSMUST00000160124.2	501	4	0	0	0	0	multi-exon	FALSE	canonical	3	1046	junction_3	68.2658203072535	590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGCTGCTGTCATACTT	NA	False	NA	16	True	AATAAA	-13	NA	20556336	20558071	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_20556556_20556701_20556786_20556917_20556956_20557911
transcript_93970.known	chr9	-	1895	6	FSM	ENSMUSG00000032172.9	ENSMUST00000215999.2	1895	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	2.92574776766556	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGCCTGGGTTGTTTTGTA	NA	False	NA	-3	True	AATAAA	-18	NA	20657645	20578988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_20580081_20582995_20583103_20583430_20583651_20583922_20584070_20586869_20587020_20657466
transcript_93973.known	chr9	+	1683	8	FSM	ENSMUSG00000038884.15	ENSMUST00000043911.8	1683	8	0	0	0	0	multi-exon	TRUE	canonical	3	59	junction_6	22.3469853694417	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTAATAGCCTTAATTCC	NA	False	NA	19	True	AATAAA	-28	NA	20779937	20785603	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_20780233_20780625_20780750_20780899_20780950_20782492_20782532_20782671_20782822_20784163_20784268_20784405_20784561_20784837
transcript_93985.known	chr9	-	1582	6	FSM	ENSMUSG00000038742.8	ENSMUST00000043726.8	1582	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	47.4409106152064	434	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGTGTCTGTCTTCCTGT	NA	False	NA	-5	True	NA	NA	NA	20791023	20785103	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_20785369_20786461_20786733_20786809_20786998_20787687_20787866_20789344_20789900_20790898
transcript_93990.known	chr9	+	1670	11	FSM	ENSMUSG00000004100.13	ENSMUST00000004203.6	1670	11	0	0	0	0	multi-exon	FALSE	canonical	3	766	junction_9	65.2172523186925	6877	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGAGTCTTCACTCTG	NA	False	NA	13	True	AATAAA	-14	NA	20799470	20803474	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_20799614_20799702_20799874_20800633_20800736_20800929_20800981_20801066_20801238_20801934_20802012_20802200_20802309_20802378_20802503_20802582_20802662_20802746_20803044_20803127
transcript_93991.known	chr9	+	1834	9	FSM	ENSMUSG00000004100.13	ENSMUST00000147780.2	1834	9	0	0	0	0	multi-exon	FALSE	canonical	3	766	junction_7	71.605582010064	3893	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGAGTCTTCACTCTG	NA	False	NA	13	True	AATAAA	-14	NA	20799580	20803474	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_20799614_20799702_20799874_20800633_20800981_20801066_20801238_20801934_20802012_20802200_20802309_20802378_20802662_20802746_20803044_20803127
transcript_93998.known	chr9	-	1101	11	FSM	ENSMUSG00000070319.7	ENSMUST00000004206.10	1101	11	0	0	0	0	multi-exon	FALSE	canonical	3	2112	junction_10	212.212370044727	15383	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCCTGCTTATTTTCT	5139	False	NA	-1	True	AGTAAA	-16	NA	20809919	20805644	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_20805739_20805928_20806036_20806128_20806266_20806384_20806493_20807123_20807314_20807411_20807517_20809002_20809063_20809183_20809273_20809379_20809464_20809673_20809721_20809839
transcript_93999.known	chr9	-	5367	39	FSM	ENSMUSG00000004099.17	ENSMUST00000004202.17	5367	39	0	0	0	0	multi-exon	TRUE	canonical	3	422	junction_35	116.269340570878	287	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGCTAGTGATTGAGTTC	NA	False	NA	-7	True	AATAAA	-17	NA	20864275	20818504	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_20818858_20819166_20819258_20819767_20820049_20820385_20820582_20820988_20821167_20821435_20821603_20822712_20822855_20823028_20823312_20823475_20823605_20823867_20823953_20825192_20825386_20827017_20827237_20828592_20828767_20829201_20829339_20829411_20829617_20829730_20829847_20831135_20831284_20831404_20831503_20833318_20833497_20833589_20833778_20834061_20834214_20834997_20835091_20835318_20835438_20837740_20837851_20837926_20838008_20838101_20838145_20838402_20838468_20840343_20840426_20841420_20841462_20843410_20843496_20845814_20845856_20847838_20847918_20848457_20848490_20849366_20849443_20851771_20851851_20852668_20852880_20852994_20853103_20853878_20853916_20864003
transcript_940.nnic	chr1	+	515	3	NNC	ENSMUSG00000099498.2	novel	288	4	NA	NA	9580	15825	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	1	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTTGTGTGTGAAGAACAA	NA	False	NA	NA	False	AATAAA	-21	NA	13148641	13164711	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_13148745_13148829_13148887_13164356
transcript_94001.known	chr9	-	6394	2	FSM	ENSMUSG00000043895.7	ENSMUST00000054197.7	6394	2	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_1	0	569	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTTTGTTTTGTTTTGT	8094	False	NA	NA	False	NA	NA	NA	20888077	20873656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_20879867_20887893
transcript_94002.known	chr9	+	1288	9	FSM	ENSMUSG00000003299.11	ENSMUST00000003386.7	1288	9	0	0	0	0	multi-exon	FALSE	canonical	3	832	junction_5	79.3851371479574	3571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGGTCACTGCTGTGG	NA	False	NA	26	True	AATAAA	-26	NA	20914033	20920135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20918241_20918729_20918837_20918926_20919037_20919118_20919196_20919789
transcript_94003.known	chr9	+	2317	5	FSM	ENSMUSG00000003299.11	ENSMUST00000213977.2	2317	5	0	0	0	0	multi-exon	FALSE	canonical	3	966	junction_4	55.0244263941025	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAAAATGAGCTGGTCAC	NA	False	NA	18	True	AATAAA	-18	NA	20914251	20920127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122
transcript_94006.known	chr9	+	2535	7	FSM	ENSMUSG00000037405.9	ENSMUST00000086399.6	2535	7	0	0	0	0	multi-exon	FALSE	canonical	3	355	junction_3	34.8456915876586	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTGAGTTTGTGTACAG	NA	False	NA	16	True	AATAAA	-21	NA	20927280	20940113	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_20927398_20930214_20930476_20936839_20937155_20937607_20937896_20938373_20938632_20938727_20938977_20939066
transcript_94010.nnic	chr9	+	1042	3	NNC	ENSMUSG00000037405.9	novel	2535	7	NA	NA	-128	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	215.5	62	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTGTGAGTTTGTGTAC	NA	False	NA	14	True	AATAAA	-19	NA	20927152	20940111	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_20927398_20930214_20930359_20939458
transcript_94011.nic	chr9	+	1100	3	ISM	ENSMUSG00000037405.9	ENSMUST00000086399.6	2535	7	-128	2680	-128	-2680	5prime_fragment	FALSE	canonical	3	431	junction_1	1	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTGGTGTGTGGGGTGGAC	NA	False	NA	NA	False	AATAAA	-21	NA	20927152	20937433	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_20927398_20930214_20930476_20936839
transcript_94013.known	chr9	+	971	3	FSM	ENSMUSG00000001014.7	ENSMUST00000001040.7	971	3	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTTACGGTTCTTG	NA	False	NA	NA	False	AATAAA	-15	NA	20940668	20941891	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_20941120_20941232_20941539_20941677
transcript_94014.known	chr9	+	2203	2	FSM	ENSMUSG00000037405.9	ENSMUST00000215003.2	2203	2	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_1	0	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCAGCCTGCTGGCCCTGT	NA	False	NA	NA	False	NA	NA	NA	20927280	20932300	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_20927398_20930214
transcript_94015.known	chr9	+	1028	2	FSM	ENSMUSG00000001014.7	ENSMUST00000215077.2	1028	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCTGCCTTACGGTTCTT	NA	False	NA	NA	False	AATAAA	-14	NA	20940749	20941890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_20941120_20941232
transcript_94016.known	chr9	-	1730	2	FSM	ENSMUSG00000097535.2	ENSMUST00000180870.2	1730	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTCTCTTTTTCTCTCAA	3781	False	NA	NA	False	NA	NA	NA	20949078	20945585	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_20946267_20948029
transcript_94017.known	chr9	-	3470	13	FSM	ENSMUSG00000010205.12	ENSMUST00000115487.3	3470	13	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_7	41.8140725912541	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGAGCTGGCTGGTTCTTG	NA	False	NA	-2	True	ATTAAA	-31	NA	21003304	20985453	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_20986793_20986880_20986965_20987259_20987404_20987862_20987938_20990504_20990811_20990896_20991109_20991379_20991468_20992000_20992114_20992270_20992401_20992479_20992672_20997540_20998011_21001545_21001613_21003054
transcript_94027.known	chr9	-	1010	5	FSM	ENSMUSG00000079681.4	ENSMUST00000115494.3	1010	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	4.5	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATTTTTAATTATGTTTT	921	False	NA	NA	False	AATAAA	-21	NA	20978389	20973688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_20974014_20974189_20974284_20974609_20974693_20977319_20977674_20978235
transcript_94028.known	chr9	-	812	5	FSM	ENSMUSG00000079677.3	ENSMUST00000010348.7	812	5	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_3	56.6171352154098	2641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCGACATGTTTTGTGT	NA	False	NA	-7	True	AATAAA	-12	NA	20984840	20978815	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_20979222_20979325_20979414_20984370_20984478_20984559_20984615_20984684
transcript_9403.known	chr10	-	519	2	FSM	ENSMUSG00000036009.17	ENSMUST00000176830.2	519	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTAAGCAAATTCTACATC	NA	False	NA	NA	False	NA	NA	NA	105677072	105675065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_105675449_105676936
transcript_94031.known	chr9	-	1662	5	FSM	ENSMUSG00000032175.12	ENSMUST00000214864.2	1662	5	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_4	20.5106679559687	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGGGCCTTACTCTGTT	NA	False	NA	NA	False	NA	NA	NA	21042539	21034754	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21035855_21036159_21036278_21038419_21038640_21039855_21040008_21042467
transcript_94033.nnic	chr9	-	764	4	NIC	ENSMUSG00000079677.3	novel	812	5	NA	NA	-7	0	combination_of_known_splicesites	FALSE	canonical	3	32	junction_3	142.14312036348	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCGACATGTTTTGTGT	NA	False	NA	-7	True	AATAAA	-12	NA	20984847	20978815	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_20979222_20979325_20979414_20984370_20984478_20984684
transcript_94035.known	chr9	-	681	4	FSM	ENSMUSG00000079677.3	ENSMUST00000215631.2	681	4	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_3	51.1881062574327	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAGGAAAGAGAAGTTGGA	NA	False	NA	NA	False	AAGAAA	-32	NA	20984802	20978990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_20979222_20979325_20979414_20984370_20984615_20984684
transcript_94040.known	chr9	+	750	2	FSM	ENSMUSG00000086016.2	ENSMUST00000135674.2	750	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCACAGTGGTACATGCCT	130	False	NA	NA	False	AATAAA	-24	NA	21003050	21039689	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_21003247_21039135
transcript_94041.known	chr9	-	1289	2	FSM	ENSMUSG00000032175.12	ENSMUST00000214615.2	1289	2	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAAAAAGAAACCA	NA	False	NA	NA	False	NA	NA	NA	21042484	21038735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21040008_21042467
transcript_94046.known	chr9	-	7851	8	FSM	ENSMUSG00000019471.11	ENSMUST00000019615.11	7851	8	0	0	0	0	multi-exon	FALSE	canonical	3	1564	junction_6	89.7352113903194	2384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTGGTCATGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	21061278	21044517	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21051260_21052053_21052126_21052248_21052432_21053306_21053430_21053508_21053625_21053717_21053827_21054242_21054522_21061051
transcript_94047.known	chr9	-	1144	6	FSM	ENSMUSG00000019471.11	ENSMUST00000215296.2	1144	6	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_4	669.696229644456	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGACTCCCCAGGGCCCA	NA	False	NA	84	True	NA	NA	NA	21061238	21052248	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21052432_21053306_21053430_21053508_21053625_21053717_21053974_21054242_21054522_21061051
transcript_9405.known	chr10	+	871	1	FSM	ENSMUSG00000112523.2	ENSMUST00000220086.2	871	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	167	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATCTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106018881	106019752	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_106018900_106019800
transcript_94050.nic	chr9	+	1612	4	ISM	ENSMUSG00000032177.18	ENSMUST00000003395.10	2524	10	8048	0	8048	0	3prime_fragment	FALSE	canonical	3	21	junction_2	2.62466929133727	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGTGAAACACATCAGCT	NA	False	NA	NA	False	NA	NA	NA	21116048	21122923	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_21116421_21116586_21116710_21117440_21117624_21121989
transcript_94052.known	chr9	-	3172	6	FSM	ENSMUSG00000003308.16	ENSMUST00000049567.10	3172	6	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_5	30.9993548319961	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTGGCTCTGAATTAACC	NA	False	NA	0	True	AATAAA	-17	NA	21150367	21141026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21142165_21142545_21142723_21142992_21143199_21144683_21145370_21148366_21149053_21150088
transcript_94053.known	chr9	-	3151	6	FSM	ENSMUSG00000003308.16	ENSMUST00000194542.6	3151	6	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_5	41.5143348736313	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGGCTCTGAATTAACCT	NA	False	NA	1	True	AATAAA	-18	NA	21150628	21141025	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21142165_21142545_21142723_21142992_21143199_21144683_21145370_21148366_21149053_21150371
transcript_9406.known	chr10	-	393	1	FSM	ENSMUSG00000056877.3	ENSMUST00000071120.3	393	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATGTAAAGCATAAATAAAAA	NA	False	NA	NA	False	AAAACA	-35	NA	106028631	106028238	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_106028200_106028600
transcript_94062.nnic	chr9	-	1573	4	NIC	ENSMUSG00000003308.16	novel	3172	6	NA	NA	-31	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_3	65.5303152916436	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTGGCTCTGAATTAACC	NA	False	NA	0	True	AATAAA	-17	NA	21150140	21141026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_21142165_21142545_21142723_21142992_21143199_21150088
transcript_94063.nnic	chr9	-	1778	4	NIC	ENSMUSG00000003308.16	novel	3151	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_3	64.5875805055086	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTGGCTCTGAATTAACC	NA	False	NA	0	True	AATAAA	-17	NA	21150628	21141026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_21142165_21142545_21142723_21142992_21143199_21150371
transcript_94069.nnic	chr9	-	977	3	NNC	ENSMUSG00000003308.16	novel	3151	6	NA	NA	-52	-610	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	25.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTCTGAATGTTTGTC	NA	False	NA	NA	False	NA	NA	NA	21150161	21148028	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_21148247_21148366_21149053_21150088
transcript_9407.known	chr10	+	3355	25	FSM	ENSMUSG00000019907.11	ENSMUST00000219263.2	3355	25	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_12	28.3996466625125	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTCACTGGACGCCGGAG	NA	False	NA	71	True	NA	NA	NA	107998053	108113212	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_107998498_108034693_108034825_108050248_108050368_108066297_108066458_108069859_108070005_108075965_108076041_108076639_108076729_108076981_108077140_108078866_108078992_108085295_108085512_108086774_108086870_108087700_108087806_108088617_108088786_108089185_108089357_108095616_108095708_108096696_108096898_108097105_108097278_108098170_108098293_108100563_108100630_108103264_108103282_108104432_108104569_108105114_108105220_108107582_108107631_108109998_108110050_108113067
transcript_94073.nnic	chr9	-	915	3	NNC	ENSMUSG00000003308.16	novel	3151	6	NA	NA	-52	-672	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	25.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTACTTTTGTTTTTAAAT	NA	False	NA	NA	False	AATAGA	-30	NA	21150161	21148090	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_21148247_21148366_21149053_21150088
transcript_94074.nnic	chr9	-	1064	3	NNC	ENSMUSG00000003308.16	novel	3151	6	NA	NA	35	-672	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	12	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTACTTTTGTTTTTAAAT	NA	False	NA	NA	False	AATAGA	-30	NA	21150593	21148090	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_21148247_21148366_21149053_21150371
transcript_94075.known	chr9	+	574	2	FSM	ENSMUSG00000097439.7	ENSMUST00000193875.6	574	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTACACATAATAAATAAATA	5156	False	NA	NA	False	NA	NA	NA	21136666	21137709	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_21136773_21137241
transcript_94076.known	chr9	-	317	2	FSM	ENSMUSG00000003308.16	ENSMUST00000193247.2	317	2	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTCTGAAGAAGTTAAAAAAA	1447	False	NA	NA	False	NA	NA	NA	21148489	21147418	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21147613_21148366
transcript_94078.known	chr9	-	2598	19	FSM	ENSMUSG00000035047.10	ENSMUST00000038671.10	2598	19	0	0	0	0	multi-exon	TRUE	canonical	3	91	junction_10	26.4070697604511	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCCCCATCCCTTCCCA	NA	False	NA	-9	True	AATAAA	-19	NA	21199265	21184752	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21185545_21186564_21186664_21186732_21186798_21187139_21187271_21187350_21187478_21187680_21187770_21187855_21187932_21190656_21190828_21191459_21191556_21191658_21191786_21192337_21192466_21192957_21193036_21193110_21193208_21193344_21193395_21193469_21193525_21196536_21196664_21197874_21197981_21198994_21199069_21199155
transcript_9408.nic	chr10	+	2489	16	ISM	ENSMUSG00000019907.11	ENSMUST00000219263.2	3355	25	-101	16420	-101	7455	5prime_fragment	TRUE	canonical	3	168	junction_12	22.3352238005851	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAAAGGAAAAGCAGGA	NA	False	NA	NA	False	NA	NA	NA	107997952	108096792	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_107998498_108034693_108034825_108050248_108050368_108066297_108066458_108069859_108070005_108075965_108076041_108076639_108076729_108076981_108077140_108078866_108078992_108085295_108085512_108086774_108086870_108087700_108087806_108088617_108088786_108089185_108089357_108095616_108095708_108096696
transcript_94085.nic	chr9	-	1164	9	ISM	ENSMUSG00000035047.10	ENSMUST00000038671.10	2598	19	-40	7286	-40	292	5prime_fragment	FALSE	canonical	3	103	junction_7	9.65336728815391	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTACGATTACTTGTGAT	NA	False	NA	NA	False	NA	NA	NA	21199305	21192038	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_-_21192466_21192957_21193036_21193110_21193208_21193344_21193395_21193469_21193525_21196536_21196664_21197874_21197981_21198994_21199069_21199155
transcript_94088.nic	chr9	-	765	3	ISM	ENSMUSG00000035047.10	ENSMUST00000183503.2	651	5	-40	4149	-40	1381	5prime_fragment	FALSE	canonical	3	103	junction_1	3	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	21199305	21197439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_-_21197981_21198994_21199069_21199155
transcript_94089.known	chr9	+	2123	10	FSM	ENSMUSG00000002820.7	ENSMUST00000216826.2	2123	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	205.444234120438	644	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGCCTGGCGTTGTTGA	8637	False	NA	21	True	GATAAA	-13	NA	21176591	21185041	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_21177014_21178034_21178119_21178202_21178377_21179546_21179966_21180598_21180724_21182015_21182147_21183763_21183843_21183931_21184009_21184086_21184207_21184549
transcript_94090.known	chr9	-	2509	7	FSM	ENSMUSG00000035047.10	ENSMUST00000183912.8	2509	7	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_2	11.0817668065862	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	21199265	21190248	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21190828_21191459_21191786_21192337_21193525_21196536_21196664_21197874_21197981_21198994_21199069_21199155
transcript_94091.known	chr9	-	691	3	FSM	ENSMUSG00000096472.3	ENSMUST00000213407.2	691	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	102.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCCAATGTGACCCAAGGC	NA	False	NA	NA	False	GGGGCT	-37	NA	21202703	21200280	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21200629_21202104_21202262_21202517
transcript_94093.known	chr9	-	1423	2	FSM	ENSMUSG00000096472.3	ENSMUST00000215619.2	1423	2	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_1	0	1066	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATGACTTCAGATTTAGG	NA	False	NA	NA	False	ATTAAA	-12	NA	21202604	21199705	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21200629_21202104
transcript_94096.known	chr9	-	1264	3	FSM	ENSMUSG00000096472.3	ENSMUST00000086374.8	1264	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	3.5	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAATTGTTTTGTGTGA	NA	False	NA	NA	False	TATAAA	-18	NA	21202449	21199761	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21200629_21201720_21201773_21202104
transcript_94097.known	chr9	-	1706	11	FSM	ENSMUSG00000003309.15	ENSMUST00000003397.9	1706	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_6	5.23545604508337	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTGAGTGTGCTTCTTG	1345	False	NA	-4	True	ATTAAA	-12	NA	21223607	21206756	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21207151_21207728_21207805_21209495_21209622_21210574_21210734_21213751_21213824_21213918_21214062_21216577_21216705_21216788_21217068_21220662_21220731_21220931_21221089_21223502
transcript_94099.known	chr9	+	3478	22	FSM	ENSMUSG00000057193.9	ENSMUST00000217461.2	3478	22	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	41.7821257447013	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGACCTGGTATGCTTAATA	6580	False	NA	19	True	AATAAA	-19	NA	21231993	21266324	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_21232148_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264977
transcript_94100.known	chr9	+	3456	22	FSM	ENSMUSG00000057193.9	ENSMUST00000034697.8	3456	22	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_21	32.3776608971381	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGACCTGGTATGCTTA	5736	False	NA	16	True	AATAAA	-16	NA	21249123	21266321	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_21249259_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264977
transcript_94103.known	chr9	+	1315	9	FSM	ENSMUSG00000057193.9	ENSMUST00000213758.2	1315	9	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	52.957382629809	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAGAAAAAAT	6630	False	NA	NA	False	NA	NA	NA	21232043	21254871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_21232148_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254344_21254430
transcript_94109.known	chr9	+	3549	20	FSM	ENSMUSG00000032178.15	ENSMUST00000067646.12	3549	20	0	0	0	0	multi-exon	FALSE	canonical	3	965	junction_18	395.630525194118	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGCCTGTCTCAGGCCTG	NA	False	NA	115	True	AATAAA	-13	NA	21279166	21316656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_21279396_21298995_21299094_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21314431_21314798_21315355_21315488_21315991
transcript_94110.known	chr9	+	3684	19	FSM	ENSMUSG00000032178.15	ENSMUST00000216892.2	3684	19	0	0	0	0	multi-exon	FALSE	canonical	3	922	junction_18	377.751077487821	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCCCTCCGTACTTGAGT	NA	False	NA	23	True	AATACA	-12	NA	21279250	21313090	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_21279396_21298995_21299094_21299407_21299447_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21311747
transcript_94113.known	chr9	+	3606	18	FSM	ENSMUSG00000032178.15	ENSMUST00000115414.3	3606	18	0	0	0	0	multi-exon	FALSE	canonical	3	922	junction_17	371.198684895057	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTACTTGAGTCTTCATTCA	NA	False	NA	32	True	AATACA	-21	NA	21279298	21313099	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_21279396_21298995_21299094_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21311747
transcript_94131.nnic	chr9	+	1072	9	NIC	ENSMUSG00000002825.9	novel	1316	10	NA	NA	-47	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_2	343.4181125101	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAAGCTCTTGTGTCTGTC	2322	False	NA	42	True	TATAAA	-28	NA	21323085	21331570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_21323242_21323528_21323598_21328360_21328440_21328567_21328684_21329579_21329719_21330586_21330663_21330734_21330845_21330920_21331009_21331331
transcript_94145.known	chr9	+	1316	10	FSM	ENSMUSG00000002825.9	ENSMUST00000002902.8	1316	10	0	0	0	0	multi-exon	FALSE	canonical	3	687	junction_5	65.5845510263914	2782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAAGCTCTTGTGTCTGTC	2369	False	NA	42	True	TATAAA	-28	NA	21323132	21331570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_21323394_21323528_21323598_21323688_21323828_21328360_21328440_21328567_21328684_21329579_21329719_21330586_21330663_21330734_21330845_21330920_21331009_21331331
transcript_94148.known	chr9	+	3502	21	FSM	ENSMUSG00000033335.18	ENSMUST00000072362.14	3502	21	0	0	0	0	multi-exon	TRUE	canonical	2	327	junction_20	112.703715555433	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACGTGTGTGGGCCTTTTGT	5879	False	NA	20	True	AATAAA	-30	NA	21336240	21418436	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21401953_21401966_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21417628
transcript_9415.known	chr10	+	2865	3	FSM	ENSMUSG00000020185.17	ENSMUST00000174857.8	2865	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	1.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCGTTTTCTTTTCATGT	NA	False	NA	NA	False	ATTAAA	-19	NA	110581325	110592498	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_110581541_110582192_110582286_110589941
transcript_94156.known	chr9	-	1213	3	FSM	ENSMUSG00000032180.12	ENSMUST00000214285.2	1213	3	0	0	0	0	multi-exon	FALSE	canonical	2	30	junction_2	267.5	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGTGCCTGGTGACTGGG	NA	False	NA	-7	True	AATAAA	-17	NA	21421483	21418852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21419688_21420226_21420411_21421289
transcript_94157.known	chr9	-	1378	4	FSM	ENSMUSG00000032180.12	ENSMUST00000034698.9	1378	4	0	0	0	0	multi-exon	FALSE	canonical	3	533	junction_2	14.8548533034381	3213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGCCTGGTGACTGGGCT	NA	False	NA	-5	True	AATAAA	-19	NA	21421548	21418850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21419688_21420226_21420411_21420549_21420648_21421289
transcript_94158.known	chr9	-	1454	3	FSM	ENSMUSG00000032180.12	ENSMUST00000213316.2	1454	3	0	0	0	0	multi-exon	FALSE	canonical	3	564	junction_2	0.5	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTGGTGACTGGGCTTA	NA	False	NA	-3	True	AATAAA	-21	NA	21421483	21418848	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21419688_21420226_21420648_21421289
transcript_9416.nic	chr10	+	349	2	ISM	ENSMUSG00000020185.17	ENSMUST00000173294.8	438	3	-16	1723	-16	-1723	5prime_fragment	FALSE	canonical	3	33	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGTAAGCACAAATAAATACT	NA	False	NA	NA	False	NA	NA	NA	110581283	110582284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_110581541_110582192
transcript_94161.nic	chr9	-	1976	10	NIC	ENSMUSG00000032182.16	novel	1894	10	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_9	17.7478915457862	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCACGCCCATGGTGACCA	6052	False	NA	-16	True	AATAAA	-17	NA	21504140	21499977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_21500855_21500930_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504022
transcript_94162.known	chr9	-	1894	10	FSM	ENSMUSG00000032182.16	ENSMUST00000078572.9	1894	10	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_9	21.338541031039	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCACGCCCATGGTGACCA	6124	False	NA	-16	True	AATAAA	-17	NA	21504068	21499977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21500855_21500930_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504032
transcript_94163.nic	chr9	-	1228	10	NIC	ENSMUSG00000032182.16	novel	1894	10	NA	NA	-16	-744	combination_of_known_junctions	FALSE	canonical	3	41	junction_9	17.7478915457862	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGATCCAGAGAATTTATA	6052	False	NA	NA	False	NA	NA	NA	21504140	21500725	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_21500855_21500930_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504022
transcript_94165.known	chr9	-	1883	9	FSM	ENSMUSG00000032182.16	ENSMUST00000213809.2	1883	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_8	29.6690073982936	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATGTCACGCCCATGGTG	6080	False	NA	-20	True	AATAAA	-13	NA	21504112	21499981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21500855_21500930_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21504022
transcript_9417.known	chr10	+	2226	7	FSM	ENSMUSG00000020185.17	ENSMUST00000174810.8	2226	7	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_6	8.37489635093408	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAGGGTTTTCCAG	NA	False	NA	NA	False	AAAAAG	-2	NA	110581328	110604000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_110581541_110582192_110582286_110589941_110590221_110595678_110595848_110599787_110600079_110601476_110601636_110602977
transcript_94171.known	chr9	-	2014	9	FSM	ENSMUSG00000032182.16	ENSMUST00000180365.9	2014	9	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_8	18.6463803457937	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATGTCACGCCCATGGTG	6086	False	NA	-20	True	AATAAA	-13	NA	21504106	21499981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504022
transcript_94177.nic	chr9	-	1284	9	NIC	ENSMUSG00000032182.16	novel	1894	10	NA	NA	-6	-744	intron_retention	FALSE	canonical	3	27	junction_8	22.544400635191	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGATCCAGAGAATTTATA	6062	False	NA	NA	False	NA	NA	NA	21504130	21500725	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504032
transcript_94180.known	chr9	-	2174	8	FSM	ENSMUSG00000032182.16	ENSMUST00000034700.15	2174	8	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_3	11.8062591493682	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCACGCCCATGGTGACCA	6068	False	NA	-16	True	AATAAA	-17	NA	21504124	21499977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823
transcript_94181.known	chr9	+	6376	34	FSM	ENSMUSG00000032187.17	ENSMUST00000098948.10	6376	34	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_28	138.291543357457	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTGCCTATAAGCCCCA	1237	False	NA	NA	False	AATAAA	-20	NA	21527464	21615526	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_21527697_21544100_21544351_21546045_21546179_21546831_21547237_21547478_21547578_21548574_21548834_21550009_21550137_21550513_21550688_21552207_21552382_21553720_21553889_21553996_21554048_21558646_21558778_21558913_21558972_21566922_21567045_21570121_21570273_21572003_21572168_21576144_21576212_21577059_21577171_21578461_21578705_21580230_21580345_21580844_21580953_21581779_21581867_21583338_21583386_21584465_21584633_21586362_21586527_21588745_21588974_21589611_21589690_21590224_21590444_21597308_21597572_21611095_21611205_21611331_21611434_21612149_21612283_21612383_21612527_21614231
transcript_94182.known	chr9	+	6354	34	FSM	ENSMUSG00000032187.17	ENSMUST00000034707.15	6354	34	0	0	0	0	multi-exon	FALSE	canonical	3	423	junction_28	87.1904283674422	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTTGCCTTGGTTCTGTG	1237	False	NA	NA	False	AATAAA	-7	NA	21527464	21615513	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_21527697_21544100_21544351_21546045_21546179_21546831_21547237_21547478_21547578_21548574_21548834_21550009_21550137_21550513_21550688_21552207_21552382_21553720_21553889_21553996_21554048_21558646_21558778_21558913_21558972_21566922_21567045_21570121_21570273_21572003_21572168_21576144_21576212_21577059_21577171_21578461_21578705_21580230_21580345_21580844_21580953_21581779_21581867_21583338_21583386_21584465_21584633_21586362_21586527_21588745_21588974_21589611_21589690_21590224_21590444_21597317_21597572_21611095_21611205_21611331_21611434_21612149_21612283_21612383_21612527_21614231
transcript_94185.nic	chr9	+	1962	10	ISM	ENSMUSG00000032187.17	ENSMUST00000174008.8	5405	34	-46	60784	-46	-43646	5prime_fragment	FALSE	canonical	3	544	junction_6	59.085625249388	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAAGAAGGTTCGCTGGG	1286	False	NA	45	True	NA	NA	NA	21527513	21553878	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_21527697_21544100_21544351_21546045_21546179_21546831_21547237_21547478_21547578_21548574_21548834_21550009_21550137_21550513_21550688_21552207_21552382_21553720
transcript_94186.known	chr9	+	4627	18	FSM	ENSMUSG00000032193.10	ENSMUST00000034713.9	4627	18	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_7	34.4140270749526	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTCATCCTTATGTGTG	1773	False	NA	16	True	ATTAAA	-15	NA	21634778	21661215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_21635141_21643042_21643166_21643607_21643731_21644786_21645171_21646532_21646656_21648515_21648639_21649169_21649290_21650150_21650277_21650681_21650854_21650944_21651170_21653482_21653602_21653952_21654093_21655217_21655360_21655525_21655682_21657027_21657202_21657657_21657736_21658444_21658603_21659436
transcript_94187.known	chr9	+	2854	10	FSM	ENSMUSG00000032193.10	ENSMUST00000217111.2	2854	10	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_7	24.2807651352991	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1929	False	NA	NA	False	NA	NA	NA	21634934	21652298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_21635141_21643042_21643166_21643607_21643731_21644786_21645171_21646532_21646656_21648515_21648639_21649169_21649290_21650150_21650277_21650681_21650854_21650944
transcript_94188.known	chr9	+	2383	9	FSM	ENSMUSG00000032193.10	ENSMUST00000215917.2	2383	9	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_7	25.7533371623951	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAACAAA	1889	False	NA	NA	False	NA	NA	NA	21634894	21651382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_21635141_21643042_21643166_21643607_21643731_21644786_21645171_21646532_21646656_21648515_21648639_21649169_21649290_21650150_21650854_21650944
transcript_94189.known	chr9	+	1739	7	FSM	ENSMUSG00000032193.10	ENSMUST00000214359.2	1739	7	0	0	0	0	multi-exon	FALSE	canonical	3	297	junction_4	14.8295875420278	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAAAAATAACAGAA	1931	False	NA	NA	False	NA	NA	NA	21634936	21649828	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_21635141_21643042_21643166_21643607_21643731_21644786_21645171_21646532_21646656_21648515_21648639_21649169
transcript_94212.known	chr9	-	356	4	FSM	ENSMUSG00000074476.7	ENSMUST00000214149.2	356	4	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_3	1018.23518348606	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCCAGGGATGATCAAGGG	NA	False	NA	NA	False	AGTAAA	-22	NA	21671598	21668434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21668490_21668585_21668691_21668980_21669126_21671547
transcript_94226.known	chr9	-	1366	5	FSM	ENSMUSG00000074476.7	ENSMUST00000098942.6	1366	5	0	0	0	0	multi-exon	FALSE	canonical	3	1938	junction_4	159.647071692531	6503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAGTGTGTGTGCAG	NA	False	NA	NA	False	NA	NA	NA	21671599	21666737	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21667592_21668412_21668490_21668585_21668691_21668980_21669126_21671414
transcript_94227.known	chr9	-	627	4	FSM	ENSMUSG00000074476.7	ENSMUST00000216057.2	627	4	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	994.029174622154	649	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGCGTTCATTGATTTAT	NA	False	NA	-22	True	ATTAAA	-12	NA	21671599	21667399	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21667592_21668585_21668691_21668980_21669126_21671414
transcript_94228.known	chr9	-	1696	3	FSM	ENSMUSG00000074476.7	ENSMUST00000217382.2	1696	3	0	0	0	0	multi-exon	FALSE	canonical	3	1938	junction_2	208.5	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTTTTGTCTGCATGTGT	NA	False	NA	0	True	NA	NA	NA	21671578	21667303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21668691_21668980_21669126_21671414
transcript_94231.nic	chr9	-	810	2	ISM	ENSMUSG00000032194.10	ENSMUST00000216008.2	3433	11	28580	303	28580	-303	3prime_fragment	FALSE	canonical	3	484	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGCCTGCCTCCAGTCAGA	NA	False	NA	NA	False	NA	NA	NA	21681219	21679660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_-_21680301_21681049
transcript_94232.known	chr9	-	5040	12	FSM	ENSMUSG00000032194.10	ENSMUST00000034717.7	5040	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	126.069113932015	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGCCTCGTGTCTGTTTG	NA	False	NA	-12	True	AATAAA	-15	NA	21710040	21678079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21680301_21681049_21681140_21681221_21681423_21684040_21684184_21685828_21686049_21686996_21687085_21690996_21691234_21691674_21691766_21691855_21692000_21705752_21706980_21707375_21707491_21709777
transcript_94234.known	chr9	-	1868	15	FSM	ENSMUSG00000032198.10	ENSMUST00000213296.2	1868	15	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	50.5494807094989	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGATTGCCTCTGTTCTCT	6275	False	NA	-6	True	NA	NA	NA	21763912	21748644	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21748848_21750046_21750210_21750438_21750533_21750648_21750777_21750920_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
transcript_94239.known	chr9	-	1324	6	FSM	ENSMUSG00000032198.10	ENSMUST00000213775.2	1324	6	0	0	0	0	multi-exon	FALSE	canonical	3	199	junction_1	8.83176086632785	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGAGAACTGGGTAAT	6275	False	NA	NA	False	NA	NA	NA	21763912	21754926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
transcript_94242.known	chr9	-	3835	5	FSM	ENSMUSG00000019066.14	ENSMUST00000115351.10	3835	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_4	8.45576726264388	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGTATATTGCTTAATTT	2233	False	NA	NA	False	AATAAA	-25	NA	21829488	21818786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21821968_21825940_21826066_21826158_21826278_21827000_21827240_21829317
transcript_94243.known	chr9	+	1531	13	FSM	ENSMUSG00000006241.17	ENSMUST00000006403.7	1531	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_12	2.13924960883224	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTTTGCACCTGCTGGTT	3126	False	NA	NA	False	AATAAA	-26	NA	21838766	21847168	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_21839025_21840388_21840523_21840603_21840831_21842605_21842640_21842994_21843084_21843160_21843243_21844099_21844287_21844841_21844910_21844991_21845069_21845413_21845530_21845730_21845814_21846825_21846925_21847091
transcript_94249.known	chr9	-	879	4	FSM	ENSMUSG00000040883.19	ENSMUST00000214569.2	879	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	104.295520304352	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATGGGCTCTGCCTTGTGG	NA	False	NA	-90	True	NA	NA	NA	21838319	21832388	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21832646_21837286_21837451_21837544_21837654_21837970
transcript_9425.known	chr10	+	1384	6	FSM	ENSMUSG00000020186.8	ENSMUST00000020403.7	1384	6	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	20.350921355064	1138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGACAATCAATTCCTT	NA	False	NA	139	True	ATTAAA	-21	NA	110755649	110775483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_110756116_110767815_110767929_110771008_110771178_110773597_110773728_110774497_110774592_110775071
transcript_94250.known	chr9	-	705	4	FSM	ENSMUSG00000040883.19	ENSMUST00000213698.2	705	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	109.004587059444	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATGCTTCTTTGGAGAT	NA	False	NA	-23	True	NA	NA	NA	21838584	21832321	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21832646_21837286_21837451_21837544_21837654_21838476
transcript_94257.known	chr9	-	862	4	FSM	ENSMUSG00000040883.19	ENSMUST00000238930.2	862	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_3	87.3473271231327	1438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGGCCATGGTCATTTTT	NA	False	NA	-7	True	AATAAA	-12	NA	21838831	21832305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21832646_21837286_21837451_21837544_21837654_21838582
transcript_94258.known	chr9	+	963	3	FSM	ENSMUSG00000006241.17	ENSMUST00000217589.2	963	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCCTGGCCTGTCTTTCA	3267	False	NA	NA	False	NA	NA	NA	21838907	21841301	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_21839039_21840388_21840523_21840603
transcript_94259.known	chr9	+	2626	10	FSM	ENSMUSG00000040563.14	ENSMUST00000046371.13	2626	10	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_8	8.89999306422257	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTTTGGCCTTCTGCCTG	97	False	NA	NA	False	AATAAA	-16	NA	21848328	21860200	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_21848455_21849690_21849861_21850594_21850675_21851980_21852170_21852297_21852434_21854646_21854919_21855691_21855869_21858241_21858365_21858676_21858729_21858899
transcript_94261.known	chr9	+	1838	2	FSM	ENSMUSG00000051238.7	ENSMUST00000053583.7	1838	2	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	0	227	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGGACTCTGGTGGTCTG	NA	False	NA	8	True	NA	NA	NA	21867050	21869560	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_21867301_21867972
transcript_94269.known	chr9	-	2103	13	FSM	ENSMUSG00000039632.14	ENSMUST00000115336.10	2103	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	2.0138409955991	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGGGTATTCACCTCTTT	4301	False	NA	NA	False	AATAAA	-16	NA	21913833	21901166	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21901541_21901692_21901778_21902097_21902254_21902903_21903061_21903143_21903305_21904167_21904324_21904833_21904957_21906108_21906235_21906322_21906425_21906503_21906675_21909181_21909260_21909340_21909463_21913541
transcript_9427.known	chr10	-	5497	16	FSM	ENSMUSG00000035798.15	ENSMUST00000217698.2	5497	16	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_6	8.74731704899025	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTGGTGTCTGCTCAGT	NA	False	NA	-3	True	AATAAA	-12	NA	110846001	110777642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_110780393_110781329_110781425_110782027_110782186_110783159_110783244_110784051_110784146_110785481_110786545_110790924_110791028_110792146_110792290_110796872_110796999_110803544_110803708_110804289_110804355_110809608_110809754_110810204_110810283_110817856_110817980_110821800_110821905_110845798
transcript_94270.known	chr9	-	903	3	FSM	ENSMUSG00000039632.14	ENSMUST00000214420.2	903	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	2	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTGTAGTGTTAATGTT	4204	False	NA	NA	False	AGTAAA	-16	NA	21913930	21908867	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21909260_21909340_21909463_21913541
transcript_94272.known	chr9	-	2197	13	FSM	ENSMUSG00000039632.14	ENSMUST00000044926.6	2197	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	2.13924960883224	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGGGTATTCACCTCTTT	4204	False	NA	NA	False	AATAAA	-16	NA	21913930	21901166	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21901541_21901692_21901778_21902097_21902254_21902903_21903061_21903143_21903305_21904167_21904321_21904833_21904957_21906108_21906235_21906322_21906425_21906503_21906675_21909181_21909260_21909340_21909463_21913541
transcript_94278.known	chr9	+	2012	18	FSM	ENSMUSG00000003402.15	ENSMUST00000003493.9	2012	18	0	0	0	0	multi-exon	TRUE	canonical	3	461	junction_11	125.012497645132	695	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTGGCTGTTTTTTAAT	NA	False	NA	20	True	AATAAA	-16	NA	21914313	21925518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_21914385_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922872_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
transcript_94281.known	chr9	+	1983	18	FSM	ENSMUSG00000003402.15	ENSMUST00000115331.10	1983	18	0	0	0	0	multi-exon	FALSE	canonical	3	290	junction_11	154.653737577573	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGTGGCTGTTTTTTA	NA	False	NA	18	True	AATAAA	-14	NA	21914361	21925516	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_21914385_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922893_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
transcript_94299.known	chr9	-	1676	9	FSM	ENSMUSG00000066839.13	ENSMUST00000180180.8	1676	9	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_8	49.2772767104677	774	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGGCCCTGTGGCTTC	5885	False	NA	-9	True	AATAAA	-15	NA	21996734	21983541	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21995318_21995505_21996652
transcript_94301.known	chr9	-	1462	8	FSM	ENSMUSG00000066839.13	ENSMUST00000179422.8	1462	8	0	0	0	0	multi-exon	TRUE	canonical	3	16	junction_7	78.0418516710419	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGGCCCTGTGGCTTC	5921	False	NA	-9	True	AATAAA	-15	NA	21996698	21983541	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21996644
transcript_94302.nnic	chr9	-	1490	8	NIC	ENSMUSG00000066839.13	novel	1676	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	10	junction_7	80.1136947196461	500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGGCCCTGTGGCTTC	5885	False	NA	-9	True	AATAAA	-15	NA	21996734	21983541	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21996652
transcript_9431.known	chr10	-	1146	8	FSM	ENSMUSG00000035798.15	ENSMUST00000099285.4	1146	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	9.28021815366384	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGAGATTCTGGTTTGT	NA	False	NA	NA	False	AATAAA	-16	NA	110845864	110797863	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_110798266_110803544_110803708_110804289_110804355_110809608_110809754_110810204_110810283_110817856_110817980_110821800_110821905_110845798
transcript_94314.known	chr9	-	2534	7	FSM	ENSMUSG00000038895.17	ENSMUST00000216916.2	2534	7	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_6	10.2102889283311	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGCTCTCTTCCTGACC	9526	False	NA	48	True	NA	NA	NA	21982572	21966706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21967190_21967288_21967825_21968582_21968695_21968796_21969712_21976996_21977213_21979443_21979488_21982344
transcript_94315.known	chr9	-	893	1	FSM	ENSMUSG00000066839.13	ENSMUST00000217445.2	893	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGTT	5888	False	NA	NA	False	NA	NA	NA	21996731	21995838	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21995800_21996700
transcript_94316.known	chr9	-	1673	9	FSM	ENSMUSG00000066839.13	ENSMUST00000098937.10	1673	9	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_8	44.5222907654132	754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGGCCCTGTGGCTTC	5896	False	NA	-9	True	AATAAA	-15	NA	21996723	21983541	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21995318_21995505_21996644
transcript_94317.known	chr9	+	2381	7	FSM	ENSMUSG00000001349.6	ENSMUST00000001384.6	2381	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	1.49071198499986	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACAAACAAAAACTGAATC	7128	False	NA	NA	False	NA	NA	NA	22010563	22020926	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_22010715_22012436_22012559_22015601_22015669_22016665_22016804_22016965_22017077_22019046_22019194_22019281
transcript_94318.known	chr9	-	567	3	FSM	ENSMUSG00000013822.8	ENSMUST00000214394.2	567	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	229.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCGTGGCTGCAGATGT	7993	False	NA	NA	False	NA	NA	NA	22028419	22024731	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_22024976_22025103_22025240_22028232
transcript_94319.known	chr9	-	888	3	FSM	ENSMUSG00000013822.8	ENSMUST00000013966.8	888	3	0	0	0	0	multi-exon	FALSE	canonical	3	357	junction_2	52.5	2225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCGCCGCTGTACTTCTT	7944	False	NA	-8	True	AATAAA	-15	NA	22028468	22024286	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_22024976_22025103_22025240_22028405
transcript_9432.known	chr10	+	871	1	FSM	ENSMUSG00000091086.3	ENSMUST00000171120.3	871	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	39830	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACCATTAAAAGTTTTCCT	NA	False	NA	NA	False	NA	NA	NA	110961711	110962582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_110961700_110962600
transcript_94322.known	chr9	-	1447	6	FSM	ENSMUSG00000001348.16	ENSMUST00000217643.2	1447	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	116.082039954508	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTCCAGAATGGGTGTGT	8896	False	NA	-30	True	AATAAA	-10	NA	22043127	22038033	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22041818_22041905_22043032
transcript_94326.known	chr9	-	1349	5	FSM	ENSMUSG00000001348.16	ENSMUST00000115315.3	1349	5	0	0	0	0	multi-exon	TRUE	canonical	3	21	junction_4	98.7734149455206	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGGGTGTGTCATCAAG	4541	False	NA	-23	True	AATAAA	-17	NA	22041894	22038026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22041818
transcript_94327.known	chr9	-	1419	5	FSM	ENSMUSG00000001348.16	ENSMUST00000213815.2	1419	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_4	92.7425873048623	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTCCAGAATGGGTGTGT	9074	False	NA	-30	True	AATAAA	-10	NA	22042949	22038033	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22042796
transcript_94328.nnic	chr9	-	1376	5	NNC	ENSMUSG00000001348.16	novel	1349	5	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_4	83.7048385698222	161	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGGGTGTGTCATCAAG	9035	False	NA	-23	True	AATAAA	-17	NA	22042988	22038026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22042885
transcript_94329.known	chr9	-	1376	5	FSM	ENSMUSG00000001348.16	ENSMUST00000165735.9	1376	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	107.395006867172	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTGTGTCATCAAGGTTA	5016	False	NA	-19	True	AATAAA	-21	NA	22047007	22038022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22046908
transcript_9433.known	chr10	+	2744	2	FSM	ENSMUSG00000035759.5	ENSMUST00000040454.5	2744	2	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCATGTAAGTTAATTGT	NA	False	NA	NA	False	AATAAA	-20	NA	111134539	111137588	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_111134769_111135073
transcript_94332.known	chr9	-	1356	5	FSM	ENSMUSG00000001348.16	ENSMUST00000069330.14	1356	5	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_4	52.4374627532645	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTGTGTCATCAAGGTTA	8912	False	NA	-19	True	AATAAA	-21	NA	22043111	22038022	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22043032
transcript_94334.known	chr9	+	676	2	FSM	ENSMUSG00000010607.9	ENSMUST00000148088.2	676	2	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	0	928	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGAGGAACACGACCAGCC	NA	False	NA	11	True	AATAAA	-11	NA	22068241	22069621	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_22068324_22069027
transcript_94335.known	chr9	+	695	2	FSM	ENSMUSG00000010607.9	ENSMUST00000123680.2	695	2	0	0	0	0	multi-exon	FALSE	canonical	3	566	junction_1	0	4282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCTTCTAAGATTTGTT	NA	False	NA	44	True	AATAAA	-44	NA	22068141	22069654	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_22068210_22069027
transcript_94339.nnic	chr9	+	1560	4	NNC	ENSMUSG00000109765.3	novel	1468	3	NA	NA	-2724	-137	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0.471404520791032	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTGTGTGTGTGTATA	5024	False	NA	NA	False	AATAAA	-14	NA	22076050	22081811	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_22076282_22078776_22078904_22079092_22079151_22080667
transcript_94344.nnic	chr9	-	1291	2	Genic_Genomic	ENSMUSG00000061167.10_ENSMUSG00000110759.2	novel	615	1	NA	NA	-116	66	multi-exon	FALSE	canonical	0	0	junction_1	0	27471	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGACTGTAACATATTTAGA	NA	False	NA	NA	False	AATAAA	-32	NA	22241912	22096836	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr9_-_22097614_22241398
transcript_94345.known	chr9	-	615	1	FSM	ENSMUSG00000061167.10	ENSMUST00000088480.4	615	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13777	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACGTGATATTTGTAAAA	NA	False	NA	NA	False	NA	NA	NA	22097517	22096902	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_22096900_22097500
transcript_94348.known	chr9	+	1425	6	FSM	ENSMUSG00000057982.9	ENSMUST00000072465.9	1425	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	52.9694251431899	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGCCTTGGTTGTGTTTTG	797	False	NA	14	True	NA	NA	NA	22137066	22154650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_22137129_22146315_22146443_22147497_22147591_22148970_22149081_22149837_22150550_22154329
transcript_94349.known	chr9	+	1766	5	FSM	ENSMUSG00000057982.9	ENSMUST00000213371.2	1766	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	49.3273504254992	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCCTGGCCGGCCATGC	749	False	NA	34	True	NA	NA	NA	22137018	22150989	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_22137129_22146315_22146443_22147323_22147591_22148970_22149081_22149837
transcript_94353.known	chr9	+	1313	5	FSM	ENSMUSG00000057982.9	ENSMUST00000215618.2	1313	5	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_4	21.3717102731625	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGGACAGACTAAATAATGC	778	False	NA	NA	False	NA	NA	NA	22137047	22150739	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_22137129_22146315_22146443_22147497_22147591_22148970_22149081_22149837
transcript_94364.known	chr9	+	597	2	FSM	ENSMUSG00000057982.9	ENSMUST00000213350.2	597	2	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_1	0	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTTACATGCTCAAGCTA	749	False	NA	NA	False	NA	NA	NA	22137018	22146802	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_22137129_22146315
transcript_94366.known	chr9	+	1800	3	FSM	ENSMUSG00000057982.9	ENSMUST00000215902.2	1800	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	83	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGACCTAACTCTCTCC	740	False	NA	NA	False	NA	NA	NA	22137009	22151391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_22137129_22146315_22146443_22149837
transcript_94367.known	chr9	-	3574	5	FSM	ENSMUSG00000062794.9	ENSMUST00000086281.5	3574	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	12.747548783982	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTAGTCTGAGATGTAG	NA	False	NA	NA	False	AATAAA	-16	NA	22171191	22158725	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_22161837_22162823_22162928_22165150_22165244_22169340_22169468_22171052
transcript_94369.known	chr9	-	3238	8	FSM	ENSMUSG00000066829.8	ENSMUST00000086278.7	3238	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	8.19407451411428	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAGTGTAAATTAAGCATT	NA	False	NA	-8	True	AATAAA	-17	NA	22218934	22188043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_22190577_22191748_22191856_22194463_22194557_22195312_22195440_22201834_22201939_22209712_22209806_22216807_22216899_22218844
transcript_94373.known	chr9	-	4605	24	FSM	ENSMUSG00000036777.9	ENSMUST00000040912.9	4605	24	0	0	0	0	multi-exon	FALSE	canonical	3	398	junction_4	55.8021416884086	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATCAGTTATTTAAGAAAT	7183	False	NA	-3	True	AATAAA	-20	NA	22300484	22243307	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_22244470_22245297_22245471_22249227_22249336_22250297_22250385_22262215_22262329_22263171_22263194_22263509_22263549_22264078_22264136_22264625_22264675_22267347_22267475_22269415_22269599_22269908_22270045_22271705_22271854_22272117_22272264_22273981_22274218_22275285_22275397_22279681_22279809_22283451_22283560_22284436_22284628_22286222_22286437_22287432_22287819_22291345_22291652_22293466_22293624_22300265
transcript_94379.known	chr9	-	1134	6	FSM	ENSMUSG00000032239.11	ENSMUST00000034763.10	1134	6	0	0	0	0	multi-exon	FALSE	canonical	3	365	junction_2	10.1311401135312	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAGTCATTATTAATACAG	9510	False	NA	-1	True	AATAAA	-23	NA	22379644	22359606	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_22360151_22361097_22361160_22365074_22365167_22368668_22368799_22370006_22370038_22379369
transcript_9438.known	chr10	+	1486	16	FSM	ENSMUSG00000058799.17	ENSMUST00000065917.16	1486	16	0	0	0	0	multi-exon	TRUE	canonical	3	684	junction_15	463.449884621364	1621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATGCTGTCTCGGTTTG	NA	False	NA	23	True	AATAAA	-25	NA	111309083	111332745	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900_111331967_111332614
transcript_94387.nnic	chr9	+	1173	2	NNC	ENSMUSG00000036411.11	novel	2223	7	NA	NA	-22610	-10073	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGACACTAGTCTGTTTTT	NA	False	NA	NA	False	AATAAA	-34	NA	22300198	22336328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_22300452_22335408
transcript_9439.known	chr10	+	1350	15	FSM	ENSMUSG00000058799.17	ENSMUST00000217908.2	1350	15	0	0	0	0	multi-exon	FALSE	canonical	3	980	junction_10	363.653962004586	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACTCATTTACTTACAGC	NA	False	NA	-11	True	NA	NA	NA	111309102	111331980	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900
transcript_94390.known	chr9	+	2223	7	FSM	ENSMUSG00000036411.11	ENSMUST00000058868.9	2223	7	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	3.62476052848859	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGTTCAGTTCTTATT	NA	False	NA	NA	False	ATTAAA	-14	NA	22322808	22355977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_22323046_22335408_22336104_22341651_22341796_22342971_22343105_22346390_22346697_22351162_22351261_22355367
transcript_94393.known	chr9	+	3425	23	FSM	ENSMUSG00000035919.17	ENSMUST00000150395.8	3425	23	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	19.2294217582595	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAATAACTGGACTGAAT	NA	False	NA	-3	True	AATAAA	-14	NA	22387017	22799570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_22387352_22387865_22387922_22402113_22402237_22408004_22408156_22415340_22415406_22425275_22425390_22479000_22479176_22486406_22486492_22489932_22490117_22490759_22490890_22540237_22540417_22546906_22546984_22550025_22550080_22555040_22555144_22557259_22557365_22566520_22566662_22570345_22570442_22582080_22582254_22590207_22590361_22705046_22705230_22723616_22723840_22798876_22798985_22799157
transcript_94394.known	chr9	+	3495	22	FSM	ENSMUSG00000035919.17	ENSMUST00000147712.8	3495	22	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	15.2048745018425	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAATAACTGGACTGAAT	NA	False	NA	-3	True	AATAAA	-14	NA	22387026	22799570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_22387487_22402113_22402237_22408004_22408156_22415340_22415406_22425275_22425390_22479000_22479176_22486406_22486492_22489932_22490117_22490759_22490890_22540237_22540417_22546906_22546984_22550025_22550080_22555040_22555144_22557259_22557365_22566520_22566662_22570345_22570442_22582080_22582254_22590207_22590361_22705046_22705230_22723616_22723840_22798876_22798985_22799157
transcript_94395.known	chr9	+	3382	22	FSM	ENSMUSG00000035919.17	ENSMUST00000039798.16	3382	22	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	13.43515542748	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACTGGACTGAATTTATAA	NA	False	NA	3	True	AATAAA	-20	NA	22387010	22799576	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_22387352_22402113_22402237_22408004_22408156_22415340_22415406_22425275_22425390_22479000_22479176_22486406_22486492_22489932_22490117_22490759_22490890_22540237_22540417_22546906_22546984_22550025_22550080_22555040_22555144_22557259_22557365_22566520_22566662_22570345_22570442_22582080_22582254_22590207_22590361_22705046_22705230_22723616_22723840_22798876_22798985_22799157
transcript_94398.known	chr9	-	78	1	FSM	ENSMUSG00000066809.2	ENSMUST00000086236.2	78	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGCCCGTGCACCTACGA	NA	False	NA	NA	False	AAGAAA	-23	NA	25012777	25012699	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_25012700_25012800
transcript_94399.known	chr9	-	2781	8	FSM	ENSMUSG00000008429.9	ENSMUST00000008573.9	2781	8	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_2	20.4550278236258	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACAGCCTTATGGGATAT	NA	False	NA	NA	False	AATAAA	-14	NA	25063116	25019427	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_25020302_25020735_25020851_25021706_25022031_25025116_25025240_25036167_25036320_25041831_25041946_25044490_25044569_25062115
transcript_944.known	chr1	-	2564	8	FSM	ENSMUSG00000042414.8	ENSMUST00000047577.7	2564	8	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_7	84.2663415993041	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAACACTTATGCTAC	NA	False	NA	-58	True	AATAAA	-10	NA	13197387	13183680	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_13184712_13186003_13186106_13188986_13189190_13192584_13192856_13194586_13194745_13194842_13194897_13195389_13196081_13197333
transcript_9440.known	chr10	+	1365	13	FSM	ENSMUSG00000058799.17	ENSMUST00000219143.2	1365	13	0	0	0	0	multi-exon	FALSE	canonical	3	980	junction_10	384.309843167665	751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTTTTTTTTTATTTCA	NA	False	NA	4	True	AATAAA	-21	NA	111309141	111330870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655
transcript_94407.known	chr9	+	2516	14	FSM	ENSMUSG00000001833.18	ENSMUST00000165594.4	2516	14	0	0	0	0	multi-exon	FALSE	canonical	1	89	junction_1	420.498140769412	1013	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTGCAGTGTCTTGTAT	NA	False	NA	17	True	AATAAA	-17	NA	25163746	25219862	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_25163996_25175498_25175504_25176689_25176793_25188839_25188947_25197963_25198065_25199479_25199615_25204980_25205099_25207690_25207784_25209107_25209205_25210787_25210840_25212707_25212834_25215012_25215149_25217421_25217562_25218808
transcript_94409.known	chr9	+	1685	4	FSM	ENSMUSG00000001833.18	ENSMUST00000215721.2	1685	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	123.205338989654	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGATAGTGTGGATCTTAT	NA	False	NA	NA	False	ATTAAA	-18	NA	25163943	25188115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_25163996_25175498_25175504_25176689_25176793_25186590
transcript_9441.known	chr10	+	1949	2	FSM	ENSMUSG00000020205.9	ENSMUST00000164773.2	1949	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTAAAGGTCTCTTTTT	NA	False	NA	18	True	ATTAAA	-18	NA	111342146	111344506	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_111343510_111343920
transcript_94411.known	chr9	+	1727	7	FSM	ENSMUSG00000001833.18	ENSMUST00000213980.2	1727	7	0	0	0	0	multi-exon	FALSE	canonical	1	12	junction_6	625.191881656255	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGGATTTGTCTTAT	NA	False	NA	NA	False	AATAAA	-15	NA	25163944	25202098	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_25163996_25175498_25175504_25176689_25176793_25188839_25188947_25197963_25198065_25199479_25199615_25200873
transcript_94412.known	chr9	+	2723	8	FSM	ENSMUSG00000036611.6	ENSMUST00000040677.6	2723	8	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	5.11101251999952	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGAGTGTGGAATGGTTT	NA	False	NA	15	True	AATAAA	-23	NA	25392842	25515406	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_25393193_25393576_25394616_25458847_25458900_25493187_25493299_25497957_25498093_25500730_25500870_25505856_25506052_25514704
transcript_94413.known	chr9	-	2859	11	FSM	ENSMUSG00000031969.17	ENSMUST00000060513.8	2859	11	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_10	23.6862829502647	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTATTTTCATGTT	9248	False	NA	NA	False	AGTAAA	-25	NA	26910845	26885439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_26887057_26888851_26888955_26889606_26889760_26890280_26890379_26890471_26890608_26896758_26896897_26901415_26901493_26901878_26901989_26902535_26902706_26903455_26903557_26910689
transcript_94418.nic	chr9	-	1891	11	NIC	ENSMUSG00000031969.17	novel	2859	11	NA	NA	-10	209	combination_of_known_junctions	FALSE	canonical	3	47	junction_10	61.1735236846791	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTTTTGGAATATTTGG	9221	False	NA	-25	True	AATAAA	-14	NA	26910872	26886462	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_26887057_26888851_26888955_26889606_26889760_26890280_26890379_26890471_26890608_26896758_26896897_26901415_26901493_26901878_26901989_26902535_26902706_26903455_26903585_26910689
transcript_94446.known	chr9	+	853	1	FSM	ENSMUSG00000035443.11	ENSMUST00000214458.2	853	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAATGCCT	NA	False	NA	NA	False	NA	NA	NA	26911023	26911876	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_26911000_26911900
transcript_94447.known	chr9	+	775	7	FSM	ENSMUSG00000035443.11	ENSMUST00000213770.2	775	7	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_6	112.305634567263	2883	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGGTTGGAAGTGTTTTC	NA	False	NA	30	True	AATAAA	-11	NA	26911005	26918626	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_26911062_26911246_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918453
transcript_94448.known	chr9	+	774	5	FSM	ENSMUSG00000035443.11	ENSMUST00000214910.2	774	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	235.013829380315	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTATCATTGAGTTTTA	NA	False	NA	3	True	AATAAA	-17	NA	26911005	26917227	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_26911062_26911246_26911353_26914892_26915061_26916441_26916511_26916852
transcript_94449.known	chr9	+	918	8	FSM	ENSMUSG00000035443.11	ENSMUST00000039161.10	918	8	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_7	172.705955134082	1405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGAAGTGTTTTCTTCT	NA	False	NA	34	True	AATAAA	-15	NA	26911017	26918630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_26911062_26911246_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918096_26918248_26918453
transcript_9445.known	chr10	+	5023	10	FSM	ENSMUSG00000063334.17	ENSMUST00000163048.8	5023	10	0	0	0	0	multi-exon	FALSE	canonical	3	311	junction_6	38.1443004172444	1170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGCTCTTGTAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	111808568	111824337	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_111808780_111811389_111811563_111812646_111812782_111813016_111813143_111813219_111813304_111814995_111815053_111815791_111815963_111818705_111818784_111818868_111818963_111820443
transcript_94450.known	chr9	+	1107	7	FSM	ENSMUSG00000035443.11	ENSMUST00000213683.2	1107	7	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_6	186.06510210736	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAAGTGTTTTCTTCTAA	NA	False	NA	36	True	AATAAA	-17	NA	26911015	26918632	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918096_26918248_26918453
transcript_94451.known	chr9	-	3575	6	FSM	ENSMUSG00000031988.11	ENSMUST00000034470.11	3575	6	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_3	12.273548794053	163	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGATTCTGTGGTCTTTCCT	NA	False	NA	-3	True	ATTAAA	-42	NA	26941361	26919066	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_26921334_26921659_26921803_26924020_26924197_26926452_26926618_26930613_26930771_26940694
transcript_94455.known	chr9	+	5149	35	FSM	ENSMUSG00000035024.17	ENSMUST00000216677.2	5149	35	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_3	21.5907395566265	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACCTAGCATTTATTATAA	NA	False	NA	NA	False	AATAAA	-16	NA	26941944	27006608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_26942127_26948280_26948436_26952688_26952852_26955791_26955977_26956346_26956518_26956823_26956886_26957200_26957289_26959450_26959585_26961592_26961666_26962657_26962784_26962914_26963168_26963619_26963677_26963889_26963962_26966767_26966842_26967339_26967475_26969156_26969378_26974559_26974752_26975065_26975164_26975272_26975389_26978238_26978347_26980963_26981079_26981170_26981279_26983020_26983260_26984018_26984099_26993701_26993840_26994125_26994260_26994479_26994677_26997235_26997347_26998677_26998861_26999274_26999493_26999728_26999863_27000595_27000674_27005696_27005769_27005856_27005918_27005992
transcript_94456.nic	chr9	+	1125	4	ISM	ENSMUSG00000035024.17	ENSMUST00000216677.2	5149	35	-472	50664	-2	-7305	5prime_fragment	FALSE	canonical	3	212	junction_3	15.9373774505092	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGGAAAACCACCTAGAAAA	NA	False	NA	NA	False	NA	NA	NA	26941472	26955944	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_26942127_26948280_26948436_26952688_26952852_26955791
transcript_94457.nic	chr9	+	1316	4	ISM	ENSMUSG00000035024.17	ENSMUST00000216677.2	5149	35	-472	50473	-2	-7114	5prime_fragment	FALSE	canonical	3	212	junction_3	15.9373774505092	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCCCAAACTACACAAATAGA	NA	False	NA	NA	False	NA	NA	NA	26941472	26956135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_26942127_26948280_26948436_26952688_26952852_26955791
transcript_94468.nnic	chr9	-	1973	9	NNC	ENSMUSG00000031990.16	novel	1942	9	NA	NA	5133	0	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_8	47.0729155141255	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTTTGTATTTTTTTT	NA	False	NA	-1	True	ATTAAA	-14	NA	27032713	27008679	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27032579
transcript_94469.nnic	chr9	-	2029	9	NNC	ENSMUSG00000031990.16	novel	1942	9	NA	NA	4308	0	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_8	53.8573056789884	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTTTGTATTTTTTTT	NA	False	NA	-1	True	ATTAAA	-14	NA	27033538	27008679	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27033348
transcript_94470.known	chr9	-	1942	9	FSM	ENSMUSG00000031990.16	ENSMUST00000034472.16	1942	9	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_8	42.8396355610082	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTTTGTATTTTTTTT	NA	False	NA	-1	True	ATTAAA	-14	NA	27066689	27008679	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27066586
transcript_94483.known	chr9	-	1234	5	FSM	ENSMUSG00000031990.16	ENSMUST00000167074.2	1234	5	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_4	57.1401785086466	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	27066714	27011963	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27066586
transcript_94484.known	chr9	+	16144	20	FSM	ENSMUSG00000034275.19	ENSMUST00000214357.2	16144	20	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_12	6.88890874608681	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTTCCTATGTTTTTT	NA	False	NA	10	True	AATAAA	-15	NA	27210499	27268842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_27210814_27220699_27220898_27222862_27223010_27228650_27228803_27229104_27229223_27230501_27230644_27230819_27230966_27233468_27233612_27233912_27234054_27234139_27234257_27234504_27234656_27235472_27235597_27238141_27238318_27239775_27240003_27240834_27240920_27242946_27243109_27243797_27243844_27244373_27246030_27253806_27253929_27257065
transcript_94486.known	chr9	+	3631	9	FSM	ENSMUSG00000031994.14	ENSMUST00000068135.13	3631	9	0	0	0	0	multi-exon	TRUE	canonical	3	22	junction_2	5.53257399408268	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAATTGTCTAGTCTGGTT	NA	False	NA	NA	False	ACTAAA	-18	NA	30853857	30874152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_30854898_30862561_30862802_30863890_30864027_30864651_30864820_30865762_30866068_30867791_30867976_30870209_30870383_30870497_30870674_30872943
transcript_94488.known	chr9	+	8861	6	FSM	ENSMUSG00000047412.17	ENSMUST00000115222.10	8861	6	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_5	55.0694107468021	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGCTGTTGTTGTCATTG	NA	False	NA	83	True	ATTAAA	-28	NA	30941941	30987181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_30942255_30964535_30965610_30973336_30973422_30975474_30975639_30977954_30978039_30980040
transcript_94489.nnic	chr9	-	1024	2	Intergenic	novelGene_122	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	22	junction_1	0	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTGTCTTAGTCTATTT	NA	False	NA	NA	False	AATAAA	-14	NA	30941512	30940268	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr9_-_30940444_30940663
transcript_94490.known	chr9	-	681	2	FSM	ENSMUSG00000097701.2	ENSMUST00000181215.2	681	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAAGCTTACTTTCCCCA	NA	False	NA	NA	False	AGTAAA	-32	NA	30993771	30991912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_30992319_30993496
transcript_94492.known	chr9	-	3259	19	FSM	ENSMUSG00000031995.10	ENSMUST00000034478.3	3259	19	0	0	0	0	multi-exon	FALSE	canonical	3	531	junction_11	45.3756610671839	331	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTTTCTTGCTATACT	NA	False	NA	0	True	AGTAAA	-24	NA	31043149	31000697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_31001324_31001697_31001835_31002632_31002908_31006830_31007018_31007770_31007894_31008149_31008264_31008368_31008480_31008852_31008958_31011435_31011567_31011681_31011792_31014171_31014270_31014981_31015122_31017309_31017551_31017784_31017821_31018012_31018171_31019199_31019271_31019450_31019579_31019866_31020027_31042841
transcript_94498.known	chr9	-	3634	17	FSM	ENSMUSG00000031996.18	ENSMUST00000072634.15	3634	17	0	0	0	0	multi-exon	FALSE	canonical	3	712	junction_10	199.562020434751	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTTGTGTTCCTGACCA	8739	False	NA	-9	True	AATAAA	-19	NA	31123087	31060852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31078856_31079025_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
transcript_9450.known	chr10	+	3451	9	FSM	ENSMUSG00000063334.17	ENSMUST00000075924.8	3451	9	0	0	0	0	multi-exon	FALSE	canonical	3	311	junction_5	40.3978263647934	885	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTATGTTGGGCTCTTTCT	NA	False	NA	NA	False	AAGAAA	-16	NA	111808679	111822799	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_111808780_111811389_111811563_111812646_111812782_111813016_111813304_111814995_111815053_111815791_111815963_111818705_111818784_111818868_111818963_111820443
transcript_94501.known	chr9	-	3462	16	FSM	ENSMUSG00000031996.18	ENSMUST00000217641.2	3462	16	0	0	0	0	multi-exon	FALSE	canonical	3	473	junction_10	230.67090554872	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTTGTGTTCCTGACCA	8743	False	NA	-9	True	AATAAA	-19	NA	31123083	31060852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
transcript_94505.nnic	chr9	-	1075	5	NNC	ENSMUSG00000031996.18	novel	3504	17	NA	NA	-62	0	at_least_one_novel_splicesite	FALSE	non_canonical	1	5	junction_1	611.364202010553	449	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTTGTGTTCCTGACCA	8653	False	NA	-9	True	AATAAA	-19	NA	31123173	31060852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_31061318_31083285_31083343_31088313_31088438_31089200_31089375_31122918
transcript_94508.known	chr9	+	1952	7	FSM	ENSMUSG00000042496.19	ENSMUST00000117389.8	1952	7	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	4.53688586293873	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATGAGCATTCTTGTTT	NA	False	NA	NA	False	AATAAA	-21	NA	31191833	31241914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_31191959_31224722_31224918_31227465_31227631_31229807_31229868_31236922_31237131_31238611_31238854_31240957
transcript_94512.nic	chr9	+	610	3	ISM	ENSMUSG00000042185.15	ENSMUST00000131540.8	645	4	-47	2460	-35	-2460	5prime_fragment	FALSE	canonical	3	76	junction_2	4.5	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATCTTCATGACGAGTTTT	NA	False	NA	NA	False	AATAAA	-12	NA	31297452	31303581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_31297567_31300172_31300346_31303258
transcript_94513.known	chr9	-	1799	6	FSM	ENSMUSG00000041737.9	ENSMUST00000048050.9	1799	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.489897948556636	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGAGCATGTGTTCTTATT	NA	False	NA	NA	False	NA	NA	NA	31375758	31337491	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_31338253_31339246_31339393_31339816_31340002_31340265_31340476_31342616_31342817_31375461
transcript_94521.nnic	chr9	-	1685	6	Antisense	novelGene_ENSMUSG00000032036.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	10	junction_5	6.40624695121879	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGCTGTCTCATCAGAGAG	NA	False	NA	NA	False	AATAAA	-17	NA	34900046	34889330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr9_-_34890279_34894916_34895038_34895356_34895445_34895840_34895961_34896290_34896441_34899788
transcript_94523.nnic	chr9	-	1592	6	Antisense	novelGene_ENSMUSG00000032036.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_5	6.15142259969188	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGCTGTCTCATCAGAGAG	NA	False	NA	NA	False	AATAAA	-17	NA	34901200	34889330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr9_-_34890279_34894916_34895038_34895356_34895445_34895840_34895961_34896290_34896441_34901035
transcript_94527.nnic	chr9	-	1601	6	Antisense	novelGene_ENSMUSG00000032036.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_5	6.15142259969188	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGCTGTCTCATCAGAGAG	NA	False	NA	NA	False	AATAAA	-17	NA	34901200	34889330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr9_-_34890279_34894916_34895038_34895356_34895445_34895840_34895970_34896290_34896441_34901035
transcript_94529.nnic	chr9	-	1565	6	Antisense	novelGene_ENSMUSG00000032036.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	6	junction_5	7.55248303539968	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGCTGTCTCATCAGAGAG	NA	False	NA	NA	False	AATAAA	-17	NA	34901376	34889330	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr9_-_34890279_34894916_34895038_34895356_34895445_34895840_34895970_34896290_34896441_34901247
transcript_94552.known	chr9	-	2095	11	FSM	ENSMUSG00000032038.8	ENSMUST00000034537.8	2095	11	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_1	8.15107354892593	530	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTTGTGGGGCTCTGTGT	NA	False	NA	-2	True	ATTAAA	-24	NA	35028169	34957871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_34958816_34959114_34959259_34963535_34963680_34964373_34964564_34964667_34964764_34965358_34965420_34965730_34965829_34965997_34966079_34966493_34966579_34966869_34966946_35027993
transcript_94553.known	chr9	-	1274	6	FSM	ENSMUSG00000032040.16	ENSMUST00000034539.12	1274	6	0	0	0	0	multi-exon	FALSE	canonical	3	621	junction_4	33.1083071146804	3199	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGGTGTAGCCCAGTAG	NA	False	NA	-3	True	AATAAA	-22	NA	35087357	35035703	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_35036141_35037602_35037714_35040756_35040871_35047639_35047786_35082372_35082548_35087066
transcript_94556.known	chr9	+	2993	14	FSM	ENSMUSG00000032042.12	ENSMUST00000034541.12	2993	14	0	0	0	0	multi-exon	TRUE	canonical	3	518	junction_4	138.528744373691	1157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTAGGTTCATATTATTT	5512	False	NA	3	True	AATAAA	-18	NA	35122450	35128310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015_35124177_35124425_35124583_35124678_35124833_35125042_35125132_35125232_35125352_35125482_35125570_35125855_35126029_35126113_35126328_35126762_35126927_35127010_35127110_35127233
transcript_9457.known	chr10	+	1149	2	FSM	ENSMUSG00000063334.17	ENSMUST00000162678.2	1149	2	0	0	0	0	multi-exon	FALSE	canonical	3	361	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTTCTCGGTCTTGGGTT	NA	False	NA	NA	False	ATTAAA	-10	NA	111808661	111812420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_111808780_111811389
transcript_94570.known	chr9	-	2366	7	FSM	ENSMUSG00000032041.16	ENSMUST00000177129.8	2366	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	26.9160216640985	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	7917	False	NA	NA	False	NA	NA	NA	35111284	35098080	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_35099227_35099952_35100592_35102313_35102473_35102616_35102679_35102869_35102993_35110506_35110616_35111156
transcript_94571.known	chr9	-	1783	7	FSM	ENSMUSG00000032041.16	ENSMUST00000176685.8	1783	7	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_5	13.6065752079239	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAATGTCATTAAAAA	7935	False	NA	NA	False	NA	NA	NA	35111266	35098639	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_35099227_35099952_35100592_35102313_35102473_35102616_35102679_35102869_35102993_35110516_35110616_35111152
transcript_94575.nic	chr9	-	1568	7	NIC	ENSMUSG00000050471.18	novel	1860	8	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_6	64.4222183894829	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTCTGGCTCTACTTTG	6348	False	NA	-20	True	ATTAAA	-21	NA	35179117	35128530	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_35129044_35129224_35129285_35132675_35132962_35134909_35135039_35138459_35138688_35146526_35146780_35179018
transcript_94579.nic	chr9	-	1340	6	NIC	ENSMUSG00000050471.18	novel	1860	8	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_5	77.9143119073768	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTCTGGCTCTACTTTG	6348	False	NA	-20	True	ATTAAA	-21	NA	35179117	35128530	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_35129044_35129224_35129285_35132675_35132962_35134909_35135039_35146526_35146780_35179018
transcript_94582.nic	chr9	+	664	4	ISM	ENSMUSG00000032042.12	ENSMUST00000034541.12	2993	14	-33	4163	-33	0	5prime_fragment	FALSE	canonical	3	967	junction_3	36.5726066278513	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAACAAAAAAAGGGGGGCCA	5479	False	NA	NA	False	AAAAAG	-8	NA	35122417	35124147	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015
transcript_94584.known	chr9	-	2212	11	FSM	ENSMUSG00000039048.16	ENSMUST00000154691.8	2212	11	0	0	0	0	multi-exon	TRUE	canonical	2	9	junction_9	80.1217199016596	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCCTCTTGAGAGTGTTTC	NA	False	NA	NA	False	NA	NA	NA	35122232	35115501	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_35116420_35116600_35116706_35116884_35117015_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35120711_35120804_35121240_35121462_35122040
transcript_94585.known	chr9	-	3260	9	FSM	ENSMUSG00000039048.16	ENSMUST00000143039.8	3260	9	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_7	18.9917745353087	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGCCTCTTGAGAGTGTT	NA	False	NA	NA	False	NA	NA	NA	35122266	35115503	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_35116420_35116600_35116706_35116884_35117015_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35120711
transcript_94586.known	chr9	-	1004	7	FSM	ENSMUSG00000039048.16	ENSMUST00000151082.8	1004	7	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_5	12.107160415776	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTGTGCCCTTATTTCCC	NA	False	NA	NA	False	AATAAA	-14	NA	35122242	35117382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35120711_35120826_35121240_35121462_35122102
transcript_94587.known	chr9	-	1860	8	FSM	ENSMUSG00000050471.18	ENSMUST00000059057.14	1860	8	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_5	33.1724006256	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGGCAATTTCTTTATGA	6364	False	NA	NA	False	TATAAA	-14	NA	35179101	35128315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_35129044_35129224_35129285_35132675_35132962_35134909_35135039_35138459_35138688_35146526_35146780_35155909_35156003_35179018
transcript_94588.known	chr9	-	1662	7	FSM	ENSMUSG00000050471.18	ENSMUST00000063782.12	1662	7	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_4	50.0954644209988	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGACAGCCTTCACCTTA	6389	False	NA	NA	False	TATAAA	-16	NA	35179076	35128260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_35129044_35129224_35129285_35132675_35132962_35134909_35135039_35146526_35146780_35155909_35156003_35179018
transcript_94589.known	chr9	-	2240	11	FSM	ENSMUSG00000039048.16	ENSMUST00000151658.8	2240	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	63.8767563359318	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGCCTCTTGAGAGTGTT	NA	False	NA	NA	False	NA	NA	NA	35122297	35115503	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_35116420_35116600_35116706_35116884_35117015_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35120711_35120826_35121235_35121462_35122102
transcript_94592.known	chr9	+	1821	7	FSM	ENSMUSG00000032044.5	ENSMUST00000034543.5	1821	7	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_6	10.6052921799554	500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTTAATTTTTTGAGAT	NA	False	NA	NA	False	NA	NA	NA	35179160	35187261	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_35179375_35179697_35179864_35181260_35181463_35183829_35183924_35183997_35184143_35184763_35184862_35186359
transcript_94598.nic	chr9	+	1100	2	ISM	ENSMUSG00000032044.5	ENSMUST00000034543.5	1821	7	-42	6720	-42	-4517	5prime_fragment	FALSE	canonical	3	165	junction_1	0	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTTAGTTGGAATAAATC	NA	False	NA	NA	False	AGTAAA	-21	NA	35179118	35180541	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_35179375_35179697
transcript_94599.known	chr9	-	318	1	FSM	ENSMUSG00000066771.3	ENSMUST00000091097.3	318	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGCCCTCCCCCAATAAAA	6767	False	NA	NA	False	NA	NA	NA	35193131	35192813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_35192800_35193100
transcript_9460.known	chr10	+	1879	6	FSM	ENSMUSG00000020214.11	ENSMUST00000020434.4	1879	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACAAAATGGTCTCAAATC	NA	False	NA	NA	False	AATAAA	-19	NA	111919258	111944003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_111919506_111928331_111928584_111932446_111932551_111933810_111933897_111942721_111942749_111942840
transcript_94601.known	chr9	-	6934	12	FSM	ENSMUSG00000032101.7	ENSMUST00000034612.7	6934	12	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_11	3.32533475603125	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTTTCCATATGCCTGC	NA	False	NA	NA	False	AATAAA	-24	NA	35469824	35447942	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_35453356_35454893_35455083_35457109_35457273_35458076_35458315_35462580_35462759_35464132_35464248_35465602_35465706_35465812_35465906_35468061_35468198_35468677_35468726_35468980_35469048_35469633
transcript_94605.nic	chr9	+	990	5	NIC	ENSMUSG00000074452.14	novel	1690	11	NA	NA	-49	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_2	4.49305018890286	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCCTGCCTCATATATTC	NA	False	NA	NA	False	AATAAA	-18	NA	35481530	35557753	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_35481827_35485525_35485684_35518890_35519016_35523067_35523168_35557442
transcript_94606.nic	chr9	+	790	4	ISM	ENSMUSG00000074452.14	ENSMUST00000098906.9	1690	11	-49	78336	-49	-34475	5prime_fragment	FALSE	canonical	2	5	junction_2	4.54606056566195	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATGATAATGTGGGAAGT	NA	False	NA	NA	False	AATAAA	-15	NA	35481530	35523278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_35481827_35485525_35485684_35518890_35519016_35523067
transcript_94609.nic	chr9	+	778	3	ISM	ENSMUSG00000074452.14	ENSMUST00000098906.9	1690	11	-49	82400	-49	-38539	5prime_fragment	FALSE	canonical	2	5	junction_2	5.5	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTGGAGGAATCTATTATA	NA	False	NA	NA	False	AATAAA	-17	NA	35481530	35519214	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_35481827_35485525_35485684_35518890
transcript_9461.known	chr10	-	3566	1	FSM	ENSMUSG00000074748.4	ENSMUST00000099276.4	3566	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1325	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTGACTCATCTTCTTA	NA	False	NA	NA	False	AATAAA	-44	NA	112764900	112761334	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_112761300_112764900
transcript_94611.known	chr9	+	2019	4	FSM	ENSMUSG00000032103.11	ENSMUST00000034615.10	2019	4	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_3	6.68331255192114	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTAGGACCCTTTAGAGTT	NA	False	NA	NA	False	AATAAA	-18	NA	35470755	35478697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_35470814_35476079_35476494_35476585_35477152_35477716
transcript_94613.known	chr9	+	2016	3	FSM	ENSMUSG00000032103.11	ENSMUST00000121246.2	2016	3	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_2	2.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAAGAAGAAAATACTGTT	NA	False	NA	NA	False	AATAAA	-21	NA	35470761	35478135	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_35470814_35476079_35476494_35476585
transcript_94614.known	chr9	+	2144	4	FSM	ENSMUSG00000032103.11	ENSMUST00000135768.2	2144	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	44.7908720859755	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTATATTTGTTCTTTTTC	NA	False	NA	12	True	ATTAAA	-12	NA	35469890	35478434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_35470030_35470598_35470814_35476079_35477152_35477716
transcript_94615.nnic	chr9	+	1338	3	NIC	ENSMUSG00000032103.11	novel	2144	4	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_1	42.5	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTATATTTGTTCTTTTTC	NA	False	NA	12	True	ATTAAA	-12	NA	35470759	35478434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_35470814_35476585_35477152_35477716
transcript_9462.known	chr10	+	358	3	FSM	ENSMUSG00000112228.2	ENSMUST00000220016.2	358	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAGCTACTCTGACATTT	NA	False	NA	NA	False	GGGGCT	-26	NA	112949293	112953831	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_112949373_112951270_112951451_112953732
transcript_94621.known	chr9	-	3397	13	FSM	ENSMUSG00000032113.17	ENSMUST00000034625.12	3397	13	0	0	0	0	multi-exon	FALSE	canonical	3	297	junction_12	54.0685650098301	773	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGGACAGCTATATTTACA	648	False	NA	NA	False	NA	NA	NA	36637954	36619777	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36635092_36635317_36637092_36637175_36637858
transcript_94624.known	chr9	-	2142	12	FSM	ENSMUSG00000032113.17	ENSMUST00000174105.8	2142	12	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_10	131.27033490643	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGGGGTCCTGTATTCC	721	False	NA	NA	False	ATTAAA	-12	NA	36637881	36620735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36637092_36637175_36637858
transcript_9463.known	chr10	-	3752	17	FSM	ENSMUSG00000020130.10	ENSMUST00000020339.10	3752	17	0	0	0	0	multi-exon	FALSE	canonical	3	391	junction_16	42.5718143259129	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGCATTTCTTTGGAGCGC	NA	False	NA	NA	False	ACTAAA	-3	NA	115087372	115033776	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_115035670_115038408_115038496_115039022_115039140_115044801_115044900_115045461_115045562_115046100_115046202_115048595_115048713_115053466_115053562_115054455_115054560_115055056_115055186_115056115_115056314_115057487_115057591_115065029_115065241_115069024_115069164_115075176_115075252_115076753_115076853_115087286
transcript_94631.known	chr9	-	310	3	FSM	ENSMUSG00000032113.17	ENSMUST00000172742.2	310	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	204.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGGCCATATCCAGTATC	855	False	NA	78	True	AATAAA	-45	NA	36637747	36635157	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_36635317_36637092_36637175_36637678
transcript_94632.known	chr9	-	508	3	FSM	ENSMUSG00000032113.17	ENSMUST00000173977.2	508	3	0	0	0	0	multi-exon	FALSE	canonical	3	297	junction_2	57	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAGGCTGACCTTGAACT	736	False	NA	NA	False	NA	NA	NA	36637866	36634898	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_36635317_36637092_36637175_36637858
transcript_94634.known	chr9	-	5867	18	FSM	ENSMUSG00000032116.19	ENSMUST00000120381.9	5867	18	0	0	0	0	multi-exon	FALSE	canonical	3	1637	junction_6	106.765013773661	1007	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCTGACTGCTTTTTTCA	NA	False	NA	-1	True	ATTAAA	-16	NA	36678975	36640639	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_36644259_36645610_36645727_36646648_36646838_36652784_36652888_36653009_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625_36663733_36666101_36666193_36670017_36670164_36670498_36670621_36674632_36674694_36676349_36676477_36678845
transcript_94638.known	chr9	-	2220	11	FSM	ENSMUSG00000062762.18	ENSMUST00000238932.2	2220	11	0	0	0	0	multi-exon	FALSE	canonical	3	488	junction_2	34.4551882885582	799	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATGTATAATGTTTGA	NA	False	NA	-8	True	ATTAAA	-17	NA	36708689	36690454	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_36691566_36693636_36693712_36694028_36694141_36695763_36695876_36696828_36696949_36697231_36697357_36697778_36697846_36699488_36699550_36701075_36701222_36704535_36704646_36708508
transcript_94639.nnic	chr9	-	2118	11	NNC	ENSMUSG00000062762.18	novel	2220	11	NA	NA	26	0	at_least_one_novel_splicesite	TRUE	canonical	3	17	junction_10	160.762060200782	751	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATGTATAATGTTTGA	NA	False	NA	-8	True	ATTAAA	-17	NA	36708631	36690454	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_36691566_36693636_36693712_36694028_36694141_36695763_36695876_36696828_36696949_36697231_36697357_36697778_36697846_36699488_36699550_36701075_36701222_36704535_36704646_36708552
transcript_9464.known	chr10	-	1641	12	FSM	ENSMUSG00000020130.10	ENSMUST00000217843.2	1641	12	0	0	0	0	multi-exon	FALSE	canonical	3	412	junction_10	40.9353451107822	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTATTTTTGTAGTTACTT	NA	False	NA	-2	True	ATTAAA	-21	NA	115057613	115035300	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_115035670_115038408_115038496_115039022_115039140_115044801_115044900_115045461_115045562_115046100_115046202_115048595_115048713_115053466_115053562_115054455_115054560_115055056_115055186_115056115_115056314_115057487
transcript_94647.known	chr9	+	1794	10	FSM	ENSMUSG00000032118.17	ENSMUST00000034630.15	1794	10	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_5	5.61743318211757	179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTCATGGTTTTTGGAGA	NA	False	NA	18	True	AATAAA	-18	NA	36743979	36790220	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_36744208_36754957_36755314_36761642_36761743_36772107_36772195_36774792_36774962_36778991_36779264_36780143_36780225_36781776_36781853_36787592_36787659_36789861
transcript_9465.known	chr10	+	400	1	FSM	ENSMUSG00000111964.2	ENSMUST00000217892.2	400	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	258	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGTGGTGACTTGATGTT	NA	False	NA	NA	False	AAAAAG	-13	NA	115105882	115106282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_115105900_115106300
transcript_94650.known	chr9	-	3632	13	FSM	ENSMUSG00000035934.17	ENSMUST00000039674.13	3632	13	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_11	4.65698400254929	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGATGCACAGTTCTCTC	NA	False	NA	-5	True	AGTAAA	-19	NA	37058703	36802277	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_36804354_36805615_36805795_36806606_36806684_36820924_36821045_36821807_36821906_36822429_36822560_36834879_36835069_36847616_36847789_36865988_36866129_36879673_36879783_36898463_36898569_36994502_36994573_37058536
transcript_94651.nnic	chr9	+	373	2	Antisense	novelGene_ENSMUSG00000035934.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	7	junction_1	0	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGTGGTCAGTCCTGTC	NA	False	NA	NA	False	ATTAAA	-15	NA	36802057	36802908	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr9_+_36802283_36802760
transcript_9466.known	chr10	-	4602	7	FSM	ENSMUSG00000020132.11	ENSMUST00000020343.9	4602	7	0	0	0	0	multi-exon	FALSE	canonical	3	420	junction_4	15.542057635833	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACCCTCGCCCTAAACT	NA	False	NA	NA	False	AGTAAA	-16	NA	115151496	115122988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_115126817_115130775_115130865_115131333_115131389_115134732_115134797_115137427_115137536_115138636_115138697_115151098
transcript_94662.nnic	chr9	+	1091	4	NNC	ENSMUSG00000032121.10	novel	2619	4	NA	NA	-59	-1522	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	19.2527054375915	141	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAAGGGCTTGCTCTTCAA	NA	False	NA	9	True	AATAAA	-15	NA	37119459	37134474	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_37119637_37129561_37129673_37130497_37130601_37133774
transcript_94663.known	chr9	+	2619	4	FSM	ENSMUSG00000032121.10	ENSMUST00000034632.10	2619	4	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	7.40870359029762	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGGAGGGAGGGAGGGAG	NA	False	NA	NA	False	NA	NA	NA	37119518	37135996	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_37119702_37129561_37129673_37130497_37130601_37133774
transcript_94664.nnic	chr9	+	1058	4	NNC	ENSMUSG00000032121.10	novel	2619	4	NA	NA	4	-1522	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	27.0102861065105	47	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAAGGGCTTGCTCTTCAA	NA	False	NA	9	True	AATAAA	-15	NA	37119522	37134474	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_37119667_37129561_37129673_37130497_37130601_37133774
transcript_94665.known	chr9	-	5943	18	FSM	ENSMUSG00000032122.16	ENSMUST00000115068.10	5943	18	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	7.12469267230106	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTATGACATATGCTTATTC	NA	False	NA	NA	False	AATAAA	-17	NA	37167034	37138880	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_37142953_37144605_37144671_37144915_37145014_37145137_37145217_37145453_37145528_37145688_37145738_37146380_37146467_37146776_37146840_37148174_37148266_37148595_37148749_37149032_37149071_37149511_37149679_37150426_37150504_37150914_37151051_37152387_37152467_37152584_37152679_37153174_37153257_37166594
transcript_94670.known	chr9	+	444	1	FSM	ENSMUSG00000090136.5	ENSMUST00000160052.2	444	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22231	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGAATGGGGCAAGCTCA	NA	False	NA	NA	False	AATAAA	-43	NA	37164217	37164661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_37164200_37164700
transcript_94671.known	chr9	+	207	1	FSM	ENSMUSG00000090136.5	ENSMUST00000161698.2	207	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTCTCATCATGGGACG	NA	False	NA	NA	False	NA	NA	NA	37164270	37164477	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_37164300_37164500
transcript_94675.nnic	chr9	-	1849	5	NNC	ENSMUSG00000034303.9	novel	1669	4	NA	NA	-9	4135	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	6.17960354715414	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACCTCCCTGTATCTTG	NA	False	NA	NA	False	NA	NA	NA	37259697	37248570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_37249764_37253731_37253918_37255179_37255330_37259033_37259220_37259563
transcript_94677.known	chr9	-	1747	4	FSM	ENSMUSG00000034303.9	ENSMUST00000217238.3	1747	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	4.92160768674447	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGTCAGGTAATAATCTA	NA	False	NA	NA	False	AATAAA	-13	NA	37259653	37252830	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_37253918_37255179_37255330_37259033_37259220_37259329
transcript_94678.known	chr9	-	1669	4	FSM	ENSMUSG00000034303.9	ENSMUST00000216042.2	1669	4	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_3	4.92160768674447	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTAGTTCCTTTTTTG	NA	False	NA	NA	False	ATTAAA	-28	NA	37259684	37252705	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_37253918_37255179_37255330_37259033_37259220_37259563
transcript_94679.known	chr9	+	3689	18	FSM	ENSMUSG00000032125.22	ENSMUST00000239486.2	3689	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.08465228909328	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTGTGACATCATTCCT	NA	False	NA	NA	False	TATAAA	-13	NA	37313341	37325318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_37313448_37313850_37314184_37314447_37314606_37314738_37314860_37315369_37315498_37315588_37315818_37316066_37316180_37316868_37317038_37317193_37317380_37317484_37317528_37319233_37319371_37319468_37319733_37321677_37321786_37321995_37322135_37322275_37322519_37322640_37323000_37324324_37324532_37324672
transcript_9468.known	chr10	-	843	1	FSM	ENSMUSG00000020132.11	ENSMUST00000218831.2	843	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACACCCGTCGTTGGAGG	NA	False	NA	-8	True	AGTAAA	-10	NA	115151499	115150656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_115150700_115151500
transcript_94680.known	chr9	+	423	4	FSM	ENSMUSG00000042138.10	ENSMUST00000214298.2	423	4	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	69.0909223817106	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATTTTGGAGTCGGTGCA	676	False	NA	NA	False	NA	NA	NA	37400895	37434013	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_37401130_37428668_37428769_37430022_37430084_37433985
transcript_94681.known	chr9	+	2289	4	FSM	ENSMUSG00000042138.10	ENSMUST00000239463.2	2289	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	92.182186758373	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAATTA	397	False	NA	NA	False	TTTAAA	-5	NA	37400616	37435444	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_37401130_37428512_37428769_37430022_37430084_37433985
transcript_94682.known	chr9	+	1865	7	FSM	ENSMUSG00000001946.15	ENSMUST00000002011.14	1865	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.24721912892465	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATTGAATCACTTTTTTT	5182	False	NA	NA	False	AATAAA	-28	NA	37439373	37449615	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_37439587_37442783_37442972_37445448_37445651_37445833_37445990_37447893_37448017_37448301_37448429_37448759
transcript_94683.known	chr9	+	1166	7	FSM	ENSMUSG00000001943.9	ENSMUST00000002008.7	1166	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.13138237134266	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCGTTCTCCTTTCTAGTG	NA	False	NA	NA	False	ATTAAA	-16	NA	37450550	37455497	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_37450735_37451164_37451323_37451589_37451798_37452622_37452782_37453650_37453771_37453884_37454030_37455305
transcript_94684.nic	chr9	+	1368	6	ISM	ENSMUSG00000001943.9	ENSMUST00000002008.7	1166	7	228	0	189	0	3prime_fragment	FALSE	canonical	2	5	junction_5	1.62480768092719	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCGTTCTCCTTTCTAGTG	NA	False	NA	NA	False	ATTAAA	-16	NA	37450778	37455497	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_37451323_37451589_37451798_37452622_37452782_37453650_37453771_37453884_37454030_37455305
transcript_94685.nnic	chr9	+	1209	5	NIC	ENSMUSG00000001943.9	novel	1166	7	NA	NA	189	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	3.39116499156263	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCGTTCTCCTTTCTAGTG	NA	False	NA	NA	False	ATTAAA	-16	NA	37450778	37455497	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_37451323_37451589_37451798_37453650_37453771_37453884_37454030_37455305
transcript_94687.nic	chr9	+	568	3	ISM	ENSMUSG00000001943.9	ENSMUST00000213502.2	501	4	972	-170	246	0	3prime_fragment	FALSE	canonical	2	5	junction_2	1.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCGTTCTCCTTTCTAGTG	NA	False	NA	NA	False	ATTAAA	-16	NA	37453539	37455497	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_37453771_37453884_37454030_37455305
transcript_94688.known	chr9	-	1453	4	FSM	ENSMUSG00000053310.12	ENSMUST00000065668.12	1453	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	6.12825877028341	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGGGTGCAGGGTGGGG	NA	False	NA	0	True	AATAAA	-19	NA	37464200	37455787	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_37456628_37456995_37457014_37457243_37457471_37463832
transcript_94689.known	chr9	+	4947	10	FSM	ENSMUSG00000001942.9	ENSMUST00000215474.2	4947	10	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_7	7.87400787401181	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37524965	37560951	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_37525223_37528095_37528258_37534194_37534371_37538995_37539135_37542644_37542901_37544253_37544364_37544916_37545051_37553935_37554094_37556047_37556244_37557592
transcript_94702.known	chr9	-	696	5	FSM	ENSMUSG00000001948.11	ENSMUST00000002013.11	696	5	0	0	0	0	multi-exon	TRUE	canonical	2	6	junction_2	1.92028643696715	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTGGTTGTCTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	37525018	37514585	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_37514783_37517088_37517167_37518912_37518984_37523131_37523315_37524851
transcript_94703.known	chr9	-	419	2	FSM	ENSMUSG00000001948.11	ENSMUST00000215336.2	419	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTGAGGAATATACATGTC	NA	False	NA	NA	False	AATAAA	-29	NA	37525018	37523062	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_37523315_37524851
transcript_94704.known	chr9	-	1761	8	FSM	ENSMUSG00000011114.19	ENSMUST00000142736.9	1761	8	0	0	0	0	multi-exon	FALSE	canonical	3	1493	junction_5	98.6130346974724	362	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTATTTGTTTCTTCTTGT	NA	False	NA	-20	True	AATAAA	-18	NA	37568533	37560477	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_37560800_37561326_37561470_37562244_37562356_37562585_37562684_37563910_37564466_37565511_37565733_37566317_37566389_37568293
transcript_94706.known	chr9	+	4157	20	FSM	ENSMUSG00000023186.15	ENSMUST00000001544.12	4157	20	0	0	0	0	multi-exon	TRUE	canonical	2	10	junction_6	2.97449918967259	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTCAAACTTTGTTTTAGT	NA	False	NA	NA	False	NA	NA	NA	38629563	38654633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_38629684_38630553_38630630_38633668_38633727_38633841_38634045_38634322_38634546_38634662_38634839_38635141_38635257_38638238_38638409_38639049_38639139_38639289_38639435_38639917_38639998_38645160_38645276_38645992_38646158_38646854_38646956_38647247_38647502_38649038_38649105_38649198_38649298_38649781_38649913_38652393_38652521_38652989
transcript_94707.nic	chr9	-	1343	4	ISM	ENSMUSG00000038112.16	ENSMUST00000119722.8	4224	20	12390	625	-311	-625	3prime_fragment	FALSE	canonical	1	1	junction_2	0.471404520791032	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTGTTGGTCTTTTGTC	NA	False	NA	1	True	ATTAAA	-20	NA	39502593	39499430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_-_39500422_39500938_39501066_39501896_39502028_39502499
transcript_94719.nnic	chr9	-	1458	5	NNC	ENSMUSG00000049073.8	novel	1879	2	NA	NA	-109757	-80	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	24.4642596454501	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTATTTATGTATTGCTA	NA	False	NA	NA	False	AATAAA	-17	NA	40151237	40038299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_40039350_40063206_40063277_40108832_40108959_40121021_40121120_40151123
transcript_94727.nnic	chr9	-	1352	4	NNC	ENSMUSG00000049073.8	novel	1879	2	NA	NA	-109749	-80	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	3.09120616516523	22	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTATTTATGTATTGCTA	NA	False	NA	NA	False	AATAAA	-17	NA	40151229	40038299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_40039350_40063206_40063277_40108832_40108959_40151123
transcript_94729.nnic	chr9	-	1332	4	NNC	ENSMUSG00000049073.8	novel	1879	2	NA	NA	-109757	-80	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	30.4448499567478	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTATTTATGTATTGCTA	NA	False	NA	NA	False	AATAAA	-17	NA	40151237	40038299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_40039350_40063206_40063277_40121021_40121120_40151123
transcript_94748.nnic	chr9	+	755	5	Genic_Genomic	ENSMUSG00000025602.14	novel	3873	7	NA	NA	3070	26353	multi-exon	FALSE	non_canonical	0	0	junction_1	0	48	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTACATTTGAATTAATG	NA	False	NA	NA	False	NA	NA	NA	40106694	40151253	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr9_+_40107006_40107349_40107440_40108832_40108959_40121021_40121120_40151123
transcript_9476.known	chr10	-	2949	7	FSM	ENSMUSG00000069520.7	ENSMUST00000219890.2	2949	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	79.1568414955748	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACTTGTTTTGTTTTTA	NA	False	NA	-4	True	TATAAA	-19	NA	115198129	115176646	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197753_115197864
transcript_94760.nnic	chr9	+	674	4	Genic_Genomic	ENSMUSG00000025602.14	novel	3873	7	NA	NA	3061	26353	multi-exon	FALSE	non_canonical	0	0	junction_1	0	37	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTACATTTGAATTAATG	NA	False	NA	NA	False	NA	NA	NA	40106685	40151253	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr9_+_40107006_40108832_40108959_40121021_40121120_40151123
transcript_94766.nnic	chr9	+	766	4	Genic_Genomic	ENSMUSG00000025602.14	novel	3873	7	NA	NA	3423	26353	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTACATTTGAATTAATG	NA	False	NA	NA	False	NA	NA	NA	40107047	40151253	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr9_+_40107440_40108832_40108959_40121001_40121120_40151123
transcript_94767.nnic	chr9	+	746	4	Genic_Genomic	ENSMUSG00000025602.14	novel	3873	7	NA	NA	3423	26353	multi-exon	FALSE	non_canonical	0	0	junction_1	0	146	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTACATTTGAATTAATG	NA	False	NA	NA	False	NA	NA	NA	40107047	40151253	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr9_+_40107440_40108832_40108959_40121021_40121120_40151123
transcript_94771.nnic	chr9	+	509	4	Genic_Genomic	ENSMUSG00000025602.14	novel	3873	7	NA	NA	4575	26353	multi-exon	FALSE	non_canonical	0	0	junction_1	0	35	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTACATTTGAATTAATG	NA	False	NA	NA	False	NA	NA	NA	40108199	40151253	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr9_+_40108355_40108832_40108959_40121021_40121120_40151123
transcript_94772.nnic	chr9	+	566	3	Intergenic	novelGene_123	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACTAAGAACATTTACATT	NA	False	NA	NA	False	NA	NA	NA	40106685	40151243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr9_+_40107006_40108832_40108959_40151123
transcript_94774.nnic	chr9	+	638	3	Intergenic	novelGene_124	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACTAAGAACATTTACATT	NA	False	NA	NA	False	NA	NA	NA	40107047	40151243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr9_+_40107440_40108832_40108959_40151123
transcript_9478.known	chr10	-	2799	7	FSM	ENSMUSG00000069520.7	ENSMUST00000217884.2	2799	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	78.0590944235342	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACTTGTTTTGTTTTTA	NA	False	NA	-4	True	TATAAA	-19	NA	115198406	115176646	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197753_115198291
transcript_94780.known	chr9	+	4024	6	FSM	ENSMUSG00000049281.17	ENSMUST00000171835.9	4024	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	0.748331477354788	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTCTGGGTTTGCTATG	NA	False	NA	NA	False	AATAAA	-40	NA	40180728	40202914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_40180899_40181263_40181344_40188363_40188528_40190670_40190897_40193719_40193859_40199669
transcript_94786.known	chr9	-	412	4	FSM	ENSMUSG00000040111.18	ENSMUST00000150977.8	412	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	1.63299316185545	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGG	NA	False	NA	NA	False	NA	NA	NA	40244824	40228042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_40228265_40228804_40228890_40238713_40238735_40244740
transcript_94787.known	chr9	+	581	1	FSM	ENSMUSG00000111515.2	ENSMUST00000215697.2	581	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAGAAAATGACTGAATAA	NA	False	NA	NA	False	NA	NA	NA	40399015	40399596	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_40399000_40399600
transcript_9479.nic	chr10	-	1286	7	NIC	ENSMUSG00000069520.7	novel	2799	7	NA	NA	-37	1339	combination_of_known_junctions	FALSE	canonical	3	22	junction_6	71.1213751273132	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCAGCTCCTCCCGTGTTC	NA	False	NA	NA	False	AATAAA	-18	NA	115198443	115178308	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197865_115198291
transcript_94791.known	chr9	-	819	4	FSM	ENSMUSG00000087135.8	ENSMUST00000149386.8	819	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	4.78423336480244	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTGACTGCCGGTGAC	NA	False	NA	NA	False	AATAAA	-29	NA	40695477	40692037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_40692492_40694218_40694287_40694531_40694743_40695391
transcript_94793.nnic	chr9	-	754	4	NNC	ENSMUSG00000087135.8	novel	819	4	NA	NA	-10993	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	5.18544972870135	62	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTGACTGCCGGTGAC	NA	False	NA	NA	False	AATAAA	-29	NA	40706470	40692037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_40692492_40694218_40694287_40696043_40696151_40706345
transcript_94794.nic	chr9	-	1152	3	ISM	ENSMUSG00000087135.8	ENSMUST00000149386.8	819	4	316	0	316	0	3prime_fragment	FALSE	canonical	3	11	junction_2	1	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTGACTGCCGGTGAC	NA	False	NA	NA	False	AATAAA	-29	NA	40695161	40692037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_-_40692492_40694218_40694287_40694531
transcript_94795.nnic	chr9	-	593	3	NIC	ENSMUSG00000087135.8	novel	819	4	NA	NA	15	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	6.5	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTGACTGCCGGTGAC	NA	False	NA	NA	False	AATAAA	-29	NA	40695462	40692037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_40692492_40694218_40694287_40695391
transcript_94796.known	chr9	-	639	3	FSM	ENSMUSG00000087135.8	ENSMUST00000132716.2	639	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.5	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTCTGTGTGTGACTGCC	NA	False	NA	NA	False	AATAAA	-23	NA	40694757	40692043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_40692389_40694218_40694287_40694531
transcript_94808.known	chr9	+	86	1	FSM	ENSMUSG00000118706.1	ENSMUST00000101927.3	86	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTATCTTCCCCAAATTTG	5178	False	NA	NA	False	NA	NA	NA	40715290	40715376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_40715300_40715400
transcript_94809.known	chr9	+	2394	9	FSM	ENSMUSG00000015656.18	ENSMUST00000015800.16	2394	9	0	0	0	0	multi-exon	FALSE	canonical	3	3928	junction_3	6050.21958150074	75090	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTGTCCTGACTGAGT	2167	False	NA	10	True	AATAAA	-20	NA	40712279	40716496	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_40712645_40713213_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716227
transcript_94810.known	chr9	+	2019	9	FSM	ENSMUSG00000015656.18	ENSMUST00000117557.8	2019	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	7062.92189779662	13338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTGTCCTGACTGAGT	2485	False	NA	10	True	AATAAA	-20	NA	40712597	40716496	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_40712645_40713213_40713424_40713713_40713920_40714091_40714188_40714269_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716227
transcript_94811.known	chr9	+	3158	4	FSM	ENSMUSG00000015656.18	ENSMUST00000149936.2	3158	4	0	0	0	0	multi-exon	FALSE	canonical	3	3928	junction_2	5585.07877195021	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAGTTGTCCTGACTGAG	2459	False	NA	9	True	AATAAA	-19	NA	40712571	40716495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_40712645_40713213_40713920_40714034_40714188_40714269
transcript_94812.known	chr9	-	6354	14	FSM	ENSMUSG00000032020.16	ENSMUST00000044155.15	6354	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	2.76067052998867	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTAAGTCCTGAGTGTGG	6362	False	NA	NA	False	AATAAA	-38	NA	41069358	40922393	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_40926333_40927893_40928004_40929312_40929420_40934716_40934862_40937545_40937639_40939312_40939436_40940934_40941056_40942776_40942910_40948732_40948942_40954770_40954941_40958176_40958376_40961735_40961923_40962612_40962667_41068594
transcript_94815.known	chr9	-	10715	48	FSM	ENSMUSG00000049313.9	ENSMUST00000060989.9	10715	48	0	0	0	0	multi-exon	TRUE	canonical	3	333	junction_27	73.2507244219374	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCAGAGCAGCAGCCGAT	NA	False	NA	-11	True	AATAAA	-16	NA	42035593	41876015	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_41879967_41880939_41881153_41885232_41885426_41887653_41887761_41888731_41888907_41890625_41890791_41891921_41892042_41894201_41894387_41895731_41895832_41896853_41896937_41898761_41898835_41900000_41900106_41900649_41900763_41902607_41902778_41902914_41903042_41903599_41903732_41907466_41907617_41911539_41911696_41912766_41912902_41913849_41913982_41915281_41915414_41917101_41917210_41919474_41919601_41925750_41925871_41929411_41929535_41933631_41933746_41935591_41935766_41942174_41942314_41942964_41943212_41944860_41944953_41946738_41946871_41948344_41948518_41952288_41952375_41952859_41952989_41955202_41955390_41957778_41957958_41968566_41968656_41975010_41975085_41975282_41975401_41979092_41979286_41982367_41982538_41983540_41983643_41993083_41993265_42001240_42001309_42003604_42003767_42010440_42010567_42017723_42017841_42035124
transcript_94818.nnic	chr9	-	662	4	Genic_Genomic	ENSMUSG00000111767.2	novel	3539	7	NA	NA	13951	-7126	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCTTCCACTCCACCTTC	NA	False	NA	NA	False	NA	NA	NA	42106558	42102069	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr9_-_42102162_42103190_42103314_42104626_42104782_42106266
transcript_94822.known	chr9	-	4787	6	FSM	ENSMUSG00000032018.15	ENSMUST00000052725.15	4787	6	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_5	23.9198662203617	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCATTGTGTGGACCTGT	NA	False	NA	-1	True	NA	NA	NA	42175552	42162890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_42167094_42167402_42167504_42169876_42170010_42170977_42171196_42173346_42173428_42175501
transcript_94823.known	chr9	-	1677	6	FSM	ENSMUSG00000032018.15	ENSMUST00000169609.2	1677	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	75.9910521048367	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGCTCTTCCATAATTC	NA	False	NA	-4	True	AATAAA	-29	NA	42175496	42166028	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_42167094_42167402_42167504_42169876_42170010_42170977_42171196_42173346_42173428_42175417
transcript_94826.known	chr9	-	3893	8	FSM	ENSMUSG00000037287.16	ENSMUST00000066179.14	3893	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	17.1607049947946	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTATAACCAAAATTATTT	NA	False	NA	NA	False	AATAAA	-18	NA	42372757	42324713	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_42327446_42348410_42348528_42350392_42350520_42354114_42354372_42355702_42355885_42361219_42361360_42362908_42363059_42372569
transcript_94827.known	chr9	-	2327	2	FSM	ENSMUSG00000037287.16	ENSMUST00000142775.2	2327	2	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAATAGAAAAAAAAAAAGA	4354	False	NA	NA	False	NA	NA	NA	42339534	42325285	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_42327446_42339367
transcript_94832.nic	chr9	-	2207	5	NIC	ENSMUSG00000059495.15	novel	2169	5	NA	NA	194	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_2	5.11737237261468	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTAAATATTGATGGCTCA	NA	False	NA	NA	False	AAAAAG	-4	NA	43016587	42935641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_42937526_42938492_42938592_42953886_42953973_42955559_42955584_43016473
transcript_94833.nic	chr9	-	549	5	NIC	ENSMUSG00000059495.15	novel	10752	41	NA	NA	194	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_2	5.11737237261468	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGTCACCTTTGTTCTTG	NA	False	NA	NA	False	AATAAA	-13	NA	43016587	42937299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_42937526_42938492_42938592_42953886_42953973_42955559_42955584_43016473
transcript_94835.known	chr9	-	3503	3	FSM	ENSMUSG00000048503.8	ENSMUST00000061833.6	3503	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	3	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGCCTTCGTATCTTTGT	NA	False	NA	NA	False	AATAAA	-22	NA	43027865	43019944	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_43023154_43024755_43024956_43027771
transcript_94837.known	chr9	-	2522	13	FSM	ENSMUSG00000032015.17	ENSMUST00000176636.5	2522	13	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_12	13.5359603361646	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGATGTTCAGAGGAGTG	NA	False	NA	NA	False	CATAAA	-17	NA	43117052	43035233	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_43036426_43038610_43038753_43040172_43040240_43045773_43045936_43048589_43048727_43050610_43050753_43051114_43051298_43054009_43054093_43056515_43056619_43058106_43058212_43087582_43087618_43110326_43110396_43116950
transcript_94838.nnic	chr9	+	1050	2	Antisense	novelGene_ENSMUSG00000032015.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	5	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTTTCTCCTGAGATTTC	NA	False	NA	NA	False	TTTAAA	-4	NA	43116833	43118422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr9_+_43117184_43117722
transcript_94840.known	chr9	-	2526	4	FSM	ENSMUSG00000032014.7	ENSMUST00000034512.7	2526	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	2.62466929133727	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAAAGGCAAAAGCCAT	NA	False	NA	NA	False	NA	NA	NA	43151208	43132531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_43134137_43135193_43135375_43136172_43136308_43150603
transcript_94844.known	chr9	+	564	3	FSM	ENSMUSG00000095385.4	ENSMUST00000179013.4	564	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAGCTCTAAAGGATGAAT	NA	False	NA	NA	False	AATAAA	-16	NA	43171176	43191363	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_43171357_43176612_43176784_43191150
transcript_94845.known	chr9	+	5653	6	FSM	ENSMUSG00000032012.10	ENSMUST00000034510.9	5653	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	3.03315017762062	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAAGTGCCTCTTGTCAC	NA	False	NA	NA	False	AATAAA	-14	NA	43655280	43718758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_43656020_43702333_43702685_43703173_43703477_43703744_43703863_43705386_43705539_43714768
transcript_94846.known	chr9	+	1735	4	FSM	ENSMUSG00000032011.6	ENSMUST00000114840.2	1735	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	3.74165738677394	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGTGTCTGTCTCTTCT	NA	False	NA	34	True	AATAAA	-20	NA	43954680	43959876	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_43954774_43957253_43957316_43957910_43958250_43958635
transcript_94847.nic	chr9	+	501	3	ISM	ENSMUSG00000032011.6	ENSMUST00000114840.2	1735	4	-8	1628	-8	0	5prime_fragment	FALSE	canonical	3	10	junction_1	3	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGAGACTGGTTCCCAGAA	NA	False	NA	NA	False	AATAAA	-19	NA	43954672	43958248	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_43954774_43957253_43957316_43957910
transcript_94848.nic	chr9	+	716	3	ISM	ENSMUSG00000032011.6	ENSMUST00000114840.2	1735	4	-149	1554	-149	74	5prime_fragment	FALSE	canonical	3	10	junction_1	3	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAACAGGCA	NA	False	NA	NA	False	NA	NA	NA	43954531	43958322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_43954774_43957253_43957316_43957910
transcript_94850.known	chr9	+	3867	13	FSM	ENSMUSG00000032010.16	ENSMUST00000034508.14	3867	13	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	11.1654228162962	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGTGACGGTCTTGAT	NA	False	NA	NA	False	AATAAA	-20	NA	43978317	44006924	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_43978518_43986662_43987520_44000428_44000480_44001326_44001451_44002300_44002413_44002508_44002620_44003132_44003198_44003381_44003486_44003572_44003654_44003773_44003853_44003998_44004107_44004423_44004545_44005070
transcript_94854.known	chr9	+	2057	12	FSM	ENSMUSG00000032010.16	ENSMUST00000065461.9	2057	12	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	11.7473401244707	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGTTTGGGTTCTCAAAA	2248	False	NA	NA	False	NA	NA	NA	43996235	44005774	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_43996633_44000428_44000480_44001326_44001451_44002300_44002413_44002508_44002620_44003132_44003198_44003381_44003486_44003572_44003654_44003773_44003853_44003998_44004107_44004423_44004545_44005070
transcript_94856.known	chr9	+	1486	12	FSM	ENSMUSG00000032010.16	ENSMUST00000176416.8	1486	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	17.2626765016321	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTCAGAAAAAAAAAAAAA	2259	False	NA	NA	False	NA	NA	NA	43996246	44005223	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_43996633_44000437_44000480_44001326_44001451_44002300_44002413_44002508_44002620_44003132_44003198_44003381_44003486_44003572_44003654_44003773_44003853_44003998_44004107_44004423_44004545_44005070
transcript_94857.known	chr9	+	2989	16	FSM	ENSMUSG00000032135.16	ENSMUST00000034650.15	2989	16	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	5.20085463062456	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCTGTGTTCCATTCAT	78	False	NA	19	True	AATAAA	-21	NA	44045858	44054024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_44046054_44047814_44047946_44048034_44048243_44048335_44048407_44048514_44048603_44050131_44050312_44050454_44050577_44050696_44050860_44050949_44051069_44051156_44051299_44051433_44051556_44051658_44051801_44051894_44051991_44052141_44052290_44052571_44052690_44053080
transcript_9486.known	chr10	-	3012	7	FSM	ENSMUSG00000069520.7	ENSMUST00000092170.7	3012	7	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_6	17.9017379665278	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACTTGTTTTGTTTTTA	NA	False	NA	-4	True	TATAAA	-19	NA	115198172	115176646	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197865_115197956
transcript_94860.known	chr9	-	2193	11	FSM	ENSMUSG00000032105.6	ENSMUST00000034618.6	2193	11	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.66332495807108	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGGATTTGTGTTTTATT	657	False	NA	NA	False	NA	NA	NA	44162768	44158603	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_44159314_44159527_44159729_44159852_44160060_44160143_44160341_44160531_44160737_44160907_44161045_44161139_44161330_44161547_44161760_44162079_44162154_44162294_44162323_44162736
transcript_94863.known	chr9	-	5333	10	FSM	ENSMUSG00000032119.6	ENSMUST00000216508.2	5333	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_7	6.83852557930183	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGAGTGTGGTGGTGCC	NA	False	NA	-2	True	NA	NA	NA	44216968	44203736	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_44207878_44208989_44209115_44209195_44209335_44209420_44209542_44209630_44209709_44210169_44210323_44210509_44210622_44210859_44211090_44213706_44213885_44216912
transcript_9487.known	chr10	-	3084	6	FSM	ENSMUSG00000069520.7	ENSMUST00000217887.2	3084	6	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_4	16.3291151015602	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACTTGTTTTGTTTTTA	NA	False	NA	-4	True	TATAAA	-19	NA	115198152	115176646	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713
transcript_94870.known	chr9	+	2050	8	FSM	ENSMUSG00000032123.6	ENSMUST00000215050.2	2050	8	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	96.7247303919104	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAAGATCACAGTGCTCC	3802	False	NA	NA	False	AATAAA	-26	NA	44238169	44245191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_44238503_44239249_44239464_44240287_44240435_44242414_44242500_44243200_44243390_44243859_44243948_44244112_44244269_44244353
transcript_94874.known	chr9	-	217	2	FSM	ENSMUSG00000110740.2	ENSMUST00000213709.2	217	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTCGGGCCTTACCTCCT	5795	False	NA	NA	False	NA	NA	NA	44245683	44243980	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_44244107_44245592
transcript_94875.known	chr9	+	2205	9	FSM	ENSMUSG00000032123.6	ENSMUST00000054708.5	2205	9	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_1	28.7920887571569	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCACAGTGCTCCATTTTC	3774	False	NA	NA	False	AATAAA	-32	NA	44238141	44245197	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_44238503_44238848_44238970_44239249_44239464_44240287_44240435_44242414_44242500_44243200_44243390_44243859_44243948_44244112_44244269_44244353
transcript_94876.known	chr9	+	1384	1	FSM	ENSMUSG00000049932.4	ENSMUST00000052686.4	1384	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4117	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTTTAATGTTGAATGCT	5253	False	NA	34	True	ATTAAA	-30	NA	44245990	44247374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_44246000_44247400
transcript_94878.known	chr9	-	1534	14	FSM	ENSMUSG00000032126.17	ENSMUST00000097558.5	1534	14	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_13	247.72641905583	527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTGAGTCTGAGACCTT	3255	False	NA	-4	True	AATAAA	-20	NA	44253678	44247648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_44248143_44248222_44248310_44248414_44248469_44248652_44248773_44248948_44248988_44249211_44249326_44250774_44250851_44250944_44251023_44251984_44252063_44252372_44252429_44252511_44252562_44252922_44252996_44253314_44253369_44253517
transcript_94879.known	chr9	-	1605	14	FSM	ENSMUSG00000032126.17	ENSMUST00000077353.15	1605	14	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_4	86.0870620274656	3228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCTTTCTGTTGTAAAAC	1408	False	NA	9	True	AATAAA	-33	NA	44255525	44247635	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_44248143_44248222_44248310_44248414_44248469_44248652_44248773_44248948_44248988_44249211_44249326_44250774_44250851_44250944_44251023_44251984_44252063_44252372_44252429_44252511_44252562_44252922_44252996_44253314_44253369_44255306
transcript_94880.known	chr9	-	3536	16	FSM	ENSMUSG00000032127.10	ENSMUST00000034644.10	3536	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	77.9168787875901	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTTCTGGATAGCCTC	6378	False	NA	NA	False	AATATA	-16	NA	44272967	44259045	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_44259882_44260199_44260423_44263893_44264066_44264205_44264409_44264511_44264652_44265133_44265296_44265399_44265589_44265705_44265853_44266260_44266448_44266995_44267148_44267524_44267727_44269365_44269614_44270434_44270599_44270908_44271045_44271135_44271285_44272741
transcript_94883.known	chr9	-	818	1	FSM	ENSMUSG00000111088.2	ENSMUST00000217460.2	818	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATGAGTATTCATGTG	NA	False	NA	NA	False	NA	NA	NA	44290747	44289929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_44289900_44290700
transcript_94884.known	chr9	+	4432	26	FSM	ENSMUSG00000032115.15	ENSMUST00000066601.13	4432	26	0	0	0	0	multi-exon	TRUE	canonical	3	476	junction_1	89.8853847964173	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTTGCTTCTTCCCTCC	NA	False	NA	7	True	AATAAA	-23	NA	44290786	44303666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_44290893_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
transcript_94886.known	chr9	+	4489	26	FSM	ENSMUSG00000032115.15	ENSMUST00000161318.8	4489	26	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_1	153.155429547894	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTATGTGTTTGCTTCTT	NA	False	NA	1	True	AATAAA	-17	NA	44290869	44303660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_44291039_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
transcript_94889.known	chr9	+	2128	9	FSM	ENSMUSG00000032114.10	ENSMUST00000215420.2	2128	9	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	8.7740740252177	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAAACAGTCAGTGGCTCA	NA	False	NA	NA	False	AATAAA	-13	NA	44308148	44314257	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_44308289_44309564_44309919_44310545_44310779_44311091_44311336_44311785_44311945_44312143_44312230_44312717_44312832_44313369_44313509_44313598
transcript_9489.known	chr10	-	4970	3	FSM	ENSMUSG00000020137.6	ENSMUST00000218842.2	4970	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	6.5	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGAATTTTTGTCATCCCT	2368	False	NA	NA	False	ATTAAA	-13	NA	115220340	115204308	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_115208852_115212256_115212453_115220109
transcript_94891.nic	chr9	+	2389	9	NIC	ENSMUSG00000032114.10	novel	2344	9	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	8.7740740252177	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCAGTGGCTCATCCTTT	NA	False	NA	NA	False	AATAAA	-19	NA	44308375	44314263	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_44308771_44309564_44309919_44310545_44310779_44311091_44311336_44311785_44311945_44312143_44312230_44312717_44312832_44313369_44313509_44313598
transcript_94892.known	chr9	+	2344	9	FSM	ENSMUSG00000032114.10	ENSMUST00000213388.2	2344	9	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	9.53939201416946	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGGCTCATCCTTTCA	NA	False	NA	NA	False	AATAAA	-21	NA	44308395	44314265	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_44308744_44309564_44309919_44310545_44310779_44311091_44311336_44311785_44311945_44312143_44312230_44312717_44312832_44313369_44313509_44313598
transcript_94896.known	chr9	-	1725	11	FSM	ENSMUSG00000043923.9	ENSMUST00000053286.9	1725	11	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_6	11.2853887837327	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCTGATTGAACCTGTAAA	8410	False	NA	0	True	AATAAA	-21	NA	44329866	44321455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_44321662_44321744_44321878_44321987_44322078_44323749_44323781_44324213_44324320_44324433_44324499_44324767_44324831_44324903_44324971_44328407_44328507_44328929_44329094_44329165
transcript_94897.known	chr9	-	1080	11	FSM	ENSMUSG00000043923.9	ENSMUST00000214494.2	1080	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	17.9677488851553	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCTGAAGGTTCCCAGG	8950	False	NA	NA	False	NA	NA	NA	44329326	44321609	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_44321662_44321744_44321878_44321987_44322078_44323749_44323781_44324213_44324341_44324433_44324499_44324739_44324831_44324903_44324971_44328407_44328507_44328929_44329094_44329165
transcript_9491.known	chr10	-	3681	2	FSM	ENSMUSG00000020137.6	ENSMUST00000020346.6	3681	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAACAAAAACACAGCTG	2393	False	NA	NA	False	NA	NA	NA	115220315	115205376	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_115208852_115220109
transcript_94927.known	chr9	-	401	3	FSM	ENSMUSG00000032112.11	ENSMUST00000217084.2	401	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	420.5	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGGTGGCAGAGAAGGCT	2031	False	NA	NA	False	NA	NA	NA	44318339	44315360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_44315396_44315630_44315758_44318100
transcript_94928.known	chr9	-	1339	1	FSM	ENSMUSG00000032112.11	ENSMUST00000215731.2	1339	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1711	False	NA	NA	False	NA	NA	NA	44318659	44317320	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_44317300_44318700
transcript_94929.known	chr9	+	1280	5	FSM	ENSMUSG00000009927.10	ENSMUST00000080300.9	1280	5	0	0	0	0	multi-exon	FALSE	canonical	3	5317	junction_4	3059.10970504492	24311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGGACATTTATTCATAC	NA	False	NA	47	True	NA	NA	NA	44318435	44321724	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_44319055_44319284_44319381_44319982_44320167_44321250_44321350_44321442
transcript_9493.nic	chr10	-	810	2	ISM	ENSMUSG00000020137.6	ENSMUST00000218842.2	4970	3	-375	7940	-367	-6872	5prime_fragment	FALSE	canonical	3	21	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCCTTTCTTAAACCGTG	1993	False	NA	NA	False	TATAAA	-16	NA	115220715	115212248	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_115212453_115220109
transcript_94930.known	chr9	-	1220	5	FSM	ENSMUSG00000032112.11	ENSMUST00000034623.8	1220	5	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_4	135.857462069626	4902	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTCTCTCCTAACTGAT	1473	False	NA	-8	True	AATAAA	-17	NA	44318897	44315055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_44315396_44315630_44315758_44316539_44316644_44318100_44318276_44318423
transcript_94931.known	chr9	-	1185	4	FSM	ENSMUSG00000032112.11	ENSMUST00000217163.2	1185	4	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_3	146.917210246678	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTTTTCTCTCCTAACTG	1741	False	NA	-10	True	AATAAA	-15	NA	44318629	44315057	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_44315758_44316539_44316644_44318100_44318276_44318423
transcript_94932.known	chr9	+	577	4	FSM	ENSMUSG00000009927.10	ENSMUST00000216867.2	577	4	0	0	0	0	multi-exon	FALSE	canonical	3	11233	junction_1	829.827692958002	709	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAATGGGTGCATCTGT	NA	False	NA	89	True	AATAAA	-14	NA	44318993	44321486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_44319055_44319284_44319381_44319982_44320167_44321250
transcript_94933.known	chr9	+	703	4	FSM	ENSMUSG00000009927.10	ENSMUST00000215610.2	703	4	0	0	0	0	multi-exon	FALSE	canonical	3	5317	junction_3	3495.27194936245	2291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGGTGCATCTGTTTCCT	NA	False	NA	94	True	AATAAA	-19	NA	44319009	44321491	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_44319381_44319982_44320167_44321250_44321350_44321442
transcript_94934.known	chr9	+	454	2	FSM	ENSMUSG00000009927.10	ENSMUST00000217231.2	454	2	0	0	0	0	multi-exon	FALSE	canonical	3	11233	junction_1	0	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTCGGCCTCCCGAG	NA	False	NA	NA	False	NA	NA	NA	44318994	44319678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_44319055_44319284
transcript_94936.known	chr9	-	1968	5	FSM	ENSMUSG00000074397.6	ENSMUST00000098837.3	1968	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	16.1322658049017	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGATGGTTCATAGGCTGA	9214	False	NA	NA	False	NA	NA	NA	44352433	44345496	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_44346607_44346719_44346879_44347155_44347400_44347500_44347576_44352053
transcript_94938.known	chr9	-	1083	5	FSM	ENSMUSG00000041523.4	ENSMUST00000047740.4	1083	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	1.4790199457749	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCGACCATGTCTATGTG	8953	False	NA	NA	False	AATAAA	-25	NA	44366273	44364011	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_44364407_44364779_44364851_44365091_44365231_44365358_44365491_44365927
transcript_9494.nnic	chr10	-	1065	2	NNC	ENSMUSG00000020137.6	novel	4970	3	NA	NA	-327	529	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGATGTTTGTTTTTAA	2033	False	NA	NA	False	ACTAAA	-20	NA	115220675	115219292	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_115219792_115220109
transcript_94940.known	chr9	+	357	1	FSM	ENSMUSG00000094437.3	ENSMUST00000178509.3	357	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGAAATGTCGGCAGCT	NA	False	NA	NA	False	NA	NA	NA	44375539	44375896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_44375500_44375900
transcript_94944.known	chr9	+	6029	14	FSM	ENSMUSG00000032097.11	ENSMUST00000217034.2	6029	14	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	7.66070431047592	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCTTGTATGTATGTTC	NA	False	NA	17	True	AATAAA	-18	NA	44516192	44552028	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_44516250_44518419_44518890_44524124_44524189_44525508_44525614_44534915_44535046_44535771_44535919_44537684_44537780_44538934_44539058_44539937_44540067_44541320_44541438_44542679_44542744_44545389_44545492_44546979_44547163_44547785
transcript_94945.known	chr9	+	6065	14	FSM	ENSMUSG00000032097.11	ENSMUST00000170489.2	6065	14	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	9.15352294193447	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCTTGTATGTATGTTC	NA	False	NA	17	True	AATAAA	-18	NA	44516188	44552028	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_44516282_44518419_44518890_44524124_44524189_44525508_44525614_44534915_44535046_44535771_44535919_44537684_44537780_44538934_44539058_44539937_44540067_44541320_44541438_44542679_44542744_44545389_44545492_44546979_44547163_44547785
transcript_9495.known	chr10	-	527	1	FSM	ENSMUSG00000020137.6	ENSMUST00000218989.2	527	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTACTCTTTTATTTTT	2360	False	NA	NA	False	ATTAAA	-21	NA	115220348	115219821	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_115219800_115220300
transcript_94952.nnic	chr9	-	1625	3	NNC	ENSMUSG00000048537.17	novel	3485	16	NA	NA	3947	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	18	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAGTGTGGAAGTCTGAG	1576	False	NA	0	True	AATAAA	-18	NA	44603781	44597604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_44598996_44599913_44600000_44603633
transcript_94953.known	chr9	-	4072	10	FSM	ENSMUSG00000032096.17	ENSMUST00000034607.10	4072	10	0	0	0	0	multi-exon	FALSE	canonical	3	910	junction_6	81.8426674920987	405	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCTTATCCCTCAAACGG	NA	False	NA	NA	False	NA	NA	NA	44679142	44652860	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_44655314_44656714_44656920_44661621_44661731_44662512_44662661_44663406_44663573_44668416_44668582_44669857_44670064_44670177_44670358_44671258_44671523_44678966
transcript_94955.nic	chr9	+	1677	13	NIC	ENSMUSG00000002031.14	novel	4169	12	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_2	68.7263090494139	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTGGCTCATTAGTGTC	NA	False	NA	10	True	AATACA	-19	NA	44684195	44702192	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_44684471_44684984_44685082_44685479_44685529_44689858_44689936_44693396_44693531_44695027_44695103_44695256_44695351_44695628_44695758_44697590_44697713_44698134_44698202_44700863_44700925_44701187_44701274_44701781
transcript_94959.known	chr9	+	1059	12	FSM	ENSMUSG00000002031.14	ENSMUST00000238800.2	1059	12	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_2	11.1058022211458	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCCTCCTGGGACTGTGC	NA	False	NA	NA	False	NA	NA	NA	44684449	44701877	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_44684471_44684984_44685082_44689858_44689936_44693396_44693531_44695027_44695103_44695256_44695351_44695628_44695758_44697590_44697713_44698134_44698202_44700863_44700925_44701187_44701274_44701781
transcript_94967.known	chr9	-	2448	9	FSM	ENSMUSG00000002032.18	ENSMUST00000002100.8	2448	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_8	3.68908864084343	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGAAGTGTTTGTTCATT	8172	False	NA	NA	False	AGTAAA	-15	NA	44710604	44705072	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_44706346_44706487_44706575_44706706_44706808_44706978_44707010_44707292_44707425_44707620_44707912_44709417_44709730_44709960_44710055_44710477
transcript_94968.known	chr9	-	2837	8	FSM	ENSMUSG00000002032.18	ENSMUST00000132020.2	2837	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	4.53557367611073	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGAAGTGTTTGTTCATT	8237	False	NA	NA	False	AGTAAA	-15	NA	44710539	44705072	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_44706346_44706487_44706575_44706706_44706808_44706978_44707010_44707292_44707425_44707620_44707912_44709417_44709761_44709960
transcript_9497.nnic	chr10	+	1106	6	NNC	ENSMUSG00000034127.16	novel	1156	9	NA	NA	16532	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	2.49799919935936	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTTTTTTGCTGTCTGGC	NA	False	NA	NA	False	AATAAA	-15	NA	115669720	115685520	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_115670161_115670996_115671072_115671180_115671289_115675779_115675906_115679956_115680041_115685247
transcript_94977.known	chr9	-	295	2	FSM	ENSMUSG00000038717.10	ENSMUST00000216380.2	295	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTGTGTTTTCTCTGTC	NA	False	NA	-29	True	AATAAA	-19	NA	44832005	44824567	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_44824765_44831907
transcript_94978.known	chr9	-	544	3	FSM	ENSMUSG00000038717.10	ENSMUST00000043675.9	544	3	0	0	0	0	multi-exon	FALSE	canonical	3	4613	junction_2	56	9332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGAGTTGTCTTTGGCTTT	NA	False	NA	24	True	NA	NA	NA	44832040	44824514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_44824765_44825948_44826110_44831907
transcript_94982.known	chr9	-	3374	9	FSM	ENSMUSG00000059890.17	ENSMUST00000138559.9	3374	9	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	11.548132965982	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACAGCACCTGTTAGCT	5322	False	NA	NA	False	AAAACA	-33	NA	44876876	44857352	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_44859516_44860079_44860283_44861030_44861191_44862078_44862232_44863287_44863401_44864239_44864471_44871276_44871438_44874634_44874731_44876782
transcript_94984.known	chr9	-	368	4	FSM	ENSMUSG00000059890.17	ENSMUST00000213666.2	368	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	22.4251842554055	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGTGTCAGAGAGCCTGG	5351	False	NA	NA	False	NA	NA	NA	44876847	44864379	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_44864414_44871276_44871438_44874634_44874731_44876770
transcript_94985.nic	chr9	-	852	4	ISM	ENSMUSG00000059890.17	ENSMUST00000138559.9	3374	9	6	6611	6	283	5prime_fragment	FALSE	canonical	3	48	junction_1	11.6714276000077	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAAAACAGAAAACTTCT	5328	False	NA	NA	False	NA	NA	NA	44876870	44863963	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_-_44864471_44871276_44871438_44874634_44874731_44876782
transcript_94988.known	chr9	-	6039	20	FSM	ENSMUSG00000059890.17	ENSMUST00000117506.9	6039	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	17.5213364192603	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTGTTAGTTCTTCATTG	5322	False	NA	0	True	AATAAA	-19	NA	44876876	44834424	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_44837274_44840959_44841118_44843639_44843788_44844595_44844777_44846624_44846800_44849146_44849248_44851258_44851447_44852451_44852585_44853863_44854169_44856102_44856224_44857481_44857816_44859323_44859516_44860079_44860283_44861030_44861191_44862078_44862232_44863287_44863401_44864239_44864414_44871276_44871438_44874634_44874731_44876782
transcript_94989.known	chr9	-	1023	7	FSM	ENSMUSG00000002033.15	ENSMUST00000002101.12	1023	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_5	2.73353657780945	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTCTCTATCCAAATAGACA	NA	False	NA	NA	False	ATTAAA	-18	NA	44891729	44880869	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_44881216_44881988_44882072_44882560_44882605_44884803_44884936_44885460_44885689_44886544_44886569_44891563
transcript_9499.nic	chr10	+	930	5	ISM	ENSMUSG00000034127.16	ENSMUST00000035563.15	1244	8	17544	0	17544	0	3prime_fragment	FALSE	canonical	2	2	junction_1	2.44948974278318	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTTTTTTGCTGTCTGGC	NA	False	NA	NA	False	AATAAA	-15	NA	115670732	115685520	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_+_115671072_115671180_115671289_115675779_115675906_115679956_115680041_115685247
transcript_94992.known	chr9	+	1617	5	FSM	ENSMUSG00000032094.9	ENSMUST00000034602.9	1617	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	2.48746859276655	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATGCTTGATTTTCAAAT	NA	False	NA	NA	False	NA	NA	NA	44893083	44898637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_44893239_44896267_44896487_44896901_44897034_44897354_44897399_44897570
transcript_94994.nnic	chr9	+	512	4	NNC	ENSMUSG00000032094.9	novel	299	2	NA	NA	-497	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	2.05480466765633	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCGCCTGTGTTTTCCAA	NA	False	NA	NA	False	AATAAA	-19	NA	44896623	44897719	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_44896811_44896901_44897034_44897354_44897399_44897570
transcript_94995.known	chr9	-	1462	8	FSM	ENSMUSG00000032093.8	ENSMUST00000102832.3	1462	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	3.13635691430002	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTATGTCTCTTTTCTTCT	4751	False	NA	NA	False	AATAAA	-17	NA	44920911	44910037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_44910886_44911732_44911780_44912276_44912445_44913435_44913652_44916809_44916825_44918473_44918492_44920645_44920748_44920863
transcript_94997.known	chr9	-	2550	4	FSM	ENSMUSG00000032093.8	ENSMUST00000214081.2	2550	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0.471404520791032	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATGAAAAATCTATAGACC	4737	False	NA	NA	False	NA	NA	NA	44920925	44914456	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_44916825_44918473_44918492_44920645_44920748_44920863
transcript_94999.known	chr9	+	3424	6	FSM	ENSMUSG00000070305.11	ENSMUST00000114664.8	3424	6	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	3.70944739819828	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCTTTTCGTGTCTAACT	NA	False	NA	27	True	AATAAA	-20	NA	44966483	44988734	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_44966617_44973338_44973506_44977636_44977848_44979504_44979671_44981953_44982018_44986051
transcript_95002.known	chr9	+	3107	6	FSM	ENSMUSG00000032092.6	ENSMUST00000034600.5	3107	6	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_5	54.042205728486	419	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGATTTTTATTATTTGC	NA	False	NA	15	True	AATAAA	-18	NA	44953722	44965313	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_44954093_44954997_44955165_44955450_44955662_44958461_44958610_44960949_44961023_44963175
transcript_95005.known	chr9	+	589	4	FSM	ENSMUSG00000048534.8	ENSMUST00000217074.2	589	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.88561808316413	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCAGAAGTGGTGTGCGG	NA	False	NA	NA	False	NA	NA	NA	45014091	45018990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_45014222_45014332_45014394_45015487_45015572_45018676
transcript_95006.nnic	chr9	+	1784	3	NNC	ENSMUSG00000037129.8	novel	3245	13	NA	NA	25994	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	2.5	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTTGTTGGGTGCTTCAT	10006	False	NA	NA	False	AATAAA	-16	NA	45256391	45258879	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_45256433_45256523_45256677_45257289
transcript_9502.known	chr10	-	1367	3	FSM	ENSMUSG00000054934.11	ENSMUST00000068233.11	1367	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTTTTTATGCTTAGAT	NA	False	NA	NA	False	ATTAAA	-23	NA	116309783	116253765	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_116254312_116282231_116282360_116309090
transcript_95024.known	chr9	+	1789	8	FSM	ENSMUSG00000066705.8	ENSMUST00000217381.2	1789	8	0	0	0	0	multi-exon	FALSE	canonical	3	728	junction_2	116.890320124361	4927	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGAGTGGCTTTTCTTCT	368	False	NA	22	True	AATAAA	-26	NA	45281482	45307457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_45281787_45301285_45301346_45301934_45301971_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280
transcript_95029.known	chr9	+	632	6	FSM	ENSMUSG00000059412.8	ENSMUST00000041005.6	632	6	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_5	6.73498329619309	1032	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTGAGTGCTTATCATTC	NA	False	NA	34	True	AATGAA	-20	NA	45314435	45321576	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_45314599_45319403_45319443_45319597_45319673_45320810_45320848_45321000_45321032_45321289
transcript_9503.known	chr10	-	1626	2	FSM	ENSMUSG00000054934.11	ENSMUST00000087965.5	1626	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGATTGTAGTGATAGT	NA	False	NA	NA	False	NA	NA	NA	116309327	116298550	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_116299940_116309090
transcript_95033.known	chr9	+	399	6	FSM	ENSMUSG00000059412.8	ENSMUST00000214654.2	399	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	107.908479740936	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGATCCTTAACTTCCTC	NA	False	NA	NA	False	NA	NA	NA	45317402	45321429	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_45317465_45319403_45319443_45319597_45319673_45320810_45320848_45321000_45321032_45321274
transcript_95040.known	chr9	+	1739	8	FSM	ENSMUSG00000032087.12	ENSMUST00000213919.2	1739	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.01695886884898	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGCTTTTGAGTTCCTTTG	9439	False	NA	NA	False	AATAAA	-36	NA	45337940	45584247	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_45337992_45338747_45338945_45358962_45359281_45361779_45361927_45572430_45572578_45579286_45579566_45581293_45581570_45583923
transcript_95047.known	chr9	-	5541	30	FSM	ENSMUSG00000043987.19	ENSMUST00000117194.8	5541	30	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_18	19.7537756592073	327	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTCCTGTGAGTGTGCT	NA	False	NA	37	True	ATTAAA	-25	NA	45739989	45678243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_45679662_45679818_45679942_45680706_45680774_45681992_45682356_45682828_45682941_45683579_45683688_45685115_45685324_45685739_45685808_45686081_45686206_45686489_45686666_45686974_45687044_45687162_45687247_45688080_45688225_45689705_45689829_45690094_45690227_45690440_45690519_45690679_45690909_45690987_45691135_45697075_45697220_45698723_45698810_45702380_45702465_45704229_45704311_45705349_45705728_45712762_45712841_45713940_45714076_45714470_45714627_45721001_45721207_45729275_45729388_45734943_45735063_45739799
transcript_95048.known	chr9	+	3876	17	FSM	ENSMUSG00000035382.10	ENSMUST00000039059.8	3876	17	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_7	6.25	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACCCAAACAAGTCCAC	NA	False	NA	NA	False	AATAAA	-13	NA	45817794	45841010	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_45818338_45819825_45819950_45820557_45821035_45821672_45821808_45822381_45822548_45824248_45824340_45825627_45825683_45826385_45826525_45827285_45827387_45830059_45830228_45830543_45830652_45831089_45831193_45837208_45837366_45838031_45838127_45838872_45838967_45839184_45839303_45839808
transcript_95052.known	chr9	-	2287	14	FSM	ENSMUSG00000042790.17	ENSMUST00000160699.9	2287	14	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_13	15.6941929485938	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGCCGTGTACATTTTTA	9086	False	NA	NA	False	NA	NA	NA	45818209	45776131	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_45776297_45777863_45777960_45778797_45778931_45779036_45779414_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811043_45811555_45816103_45816218_45818035
transcript_95053.known	chr9	-	3964	14	FSM	ENSMUSG00000042790.17	ENSMUST00000058720.13	3964	14	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_13	9.64395754655542	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTCTTGCCTTATTGTC	9120	False	NA	17	True	NA	NA	NA	45818175	45774806	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_45776297_45777863_45777960_45778797_45778931_45779036_45779414_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811043_45811555_45816103_45816218_45817649
transcript_95059.known	chr9	-	667	3	FSM	ENSMUSG00000042790.17	ENSMUST00000160325.2	667	3	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45811417	45807290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_45807524_45809729_45809790_45811043
transcript_95063.known	chr9	-	794	6	FSM	ENSMUSG00000003131.8	ENSMUST00000214179.2	794	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_5	143.058869001541	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATCAGTGTTACAGCATC	9711	False	NA	NA	False	NA	NA	NA	45896692	45879981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_45880265_45884239_45884363_45886378_45886496_45887338_45887429_45889939_45890028_45896599
transcript_95066.nic	chr9	+	1918	6	ISM	ENSMUSG00000034135.16	ENSMUST00000120463.9	4180	24	197599	0	-9108	0	3prime_fragment	FALSE	canonical	3	47	junction_1	6.54217089351845	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAGTGTCCTCCATCTTTC	2740	False	NA	1	True	AATAAA	-7	NA	46121760	46133573	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_46122114_46122967_46123861_46130723_46130888_46131507_46131641_46132364_46132533_46133366
transcript_95072.known	chr9	+	2539	10	FSM	ENSMUSG00000032077.6	ENSMUST00000074957.5	2539	10	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	15.5737988261228	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTGGCTCAGATGGGCT	NA	False	NA	NA	False	NA	NA	NA	46194305	46210408	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_46194472_46197640_46197732_46198314_46198400_46198959_46199734_46201423_46201642_46202605_46202709_46202992_46203132_46203363_46203549_46203745_46203828_46209712
transcript_95088.nnic	chr9	+	686	3	NNC	ENSMUSG00000044229.10	novel	4871	9	NA	NA	-12	-205469	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2	17	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGTCATCTTCGTAAAAA	NA	False	NA	NA	False	AATAAA	-24	NA	48073308	48105359	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_48073558_48102995_48103155_48105081
transcript_9509.known	chr10	-	2120	16	FSM	ENSMUSG00000020166.16	ENSMUST00000169921.8	2120	16	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_15	117.305110242005	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGTGAAGATCCTTC	NA	False	NA	-12	True	AATAAA	-19	NA	116417416	116321691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116384937_116385011_116417357
transcript_95098.known	chr9	-	1077	7	FSM	ENSMUSG00000032026.8	ENSMUST00000034524.5	1077	7	0	0	0	0	multi-exon	FALSE	canonical	3	1058	junction_4	53.1959167188193	4754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTCGGCACCCTCTGCTC	NA	False	NA	-1	True	AATAAA	-26	NA	48391911	48379811	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_48380247_48383119_48383174_48384331_48384441_48385701_48385814_48386419_48386498_48390609_48390694_48391706
transcript_9510.known	chr10	-	2800	16	FSM	ENSMUSG00000020166.16	ENSMUST00000105267.8	2800	16	0	0	0	0	multi-exon	FALSE	canonical	3	333	junction_15	67.9643697503005	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCAGTGTTGGCTTTGAT	NA	False	NA	-6	True	AATAAA	-18	NA	116417405	116321070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116384937_116385081_116417357
transcript_95128.known	chr9	-	609	5	FSM	ENSMUSG00000032026.8	ENSMUST00000217037.2	609	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	488.234062719921	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGAATTTGGTCATCATT	NA	False	NA	NA	False	NA	NA	NA	48391890	48385460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_48385671_48385760_48385814_48386419_48386498_48390609_48390694_48391706
transcript_95130.known	chr9	-	454	4	FSM	ENSMUSG00000032026.8	ENSMUST00000216470.2	454	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	548.288853312437	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAACTCGATCTGAGAAACA	NA	False	NA	NA	False	NA	NA	NA	48391879	48385551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_48385671_48386419_48386498_48390609_48390694_48391706
transcript_95131.known	chr9	-	1780	4	FSM	ENSMUSG00000032026.8	ENSMUST00000213508.2	1780	4	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	526.615820330364	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATATGATTCAGTTAAAGT	NA	False	NA	-15	True	AATAAA	-10	NA	48391915	48384790	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_48386200_48386419_48386498_48390609_48390694_48391706
transcript_95133.known	chr9	-	553	3	FSM	ENSMUSG00000032026.8	ENSMUST00000214161.2	553	3	0	0	0	0	multi-exon	FALSE	canonical	3	1141	junction_1	21.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTCTACATTCAGTCTG	NA	False	NA	NA	False	NA	NA	NA	48391893	48386215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_48386498_48390609_48390694_48391706
transcript_95134.known	chr9	-	693	4	FSM	ENSMUSG00000032026.8	ENSMUST00000216624.2	693	4	0	0	0	0	multi-exon	FALSE	canonical	3	1058	junction_1	52.2961651451508	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATTTCAGATGCACAGA	NA	False	NA	NA	False	NA	NA	NA	48391906	48385482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_48385814_48386419_48386498_48390609_48390694_48391706
transcript_95135.known	chr9	-	1867	6	FSM	ENSMUSG00000042396.11	ENSMUST00000214923.2	1867	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	182.483314305719	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAAGAGAATGTGTCTC	NA	False	NA	-12	True	ATTAAA	-4	NA	48406594	48400008	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_48401289_48402147_48402239_48404706_48404795_48405318_48405482_48405582_48405688_48406454
transcript_95140.known	chr9	-	1773	5	FSM	ENSMUSG00000042396.11	ENSMUST00000170000.4	1773	5	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_3	15.188400179084	1129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGTGTCTCTTTATTTT	NA	False	NA	-4	True	ATTAAA	-12	NA	48406597	48400000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_48401289_48402147_48402239_48404706_48404795_48405318_48405482_48406454
transcript_95152.known	chr9	-	2703	1	FSM	ENSMUSG00000042396.11	ENSMUST00000213525.2	2703	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	48406599	48403896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_48403900_48406600
transcript_95153.known	chr9	+	531	1	FSM	ENSMUSG00000042293.9	ENSMUST00000048824.9	531	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	593	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTGGTGTGACGGCAGT	2783	False	NA	14	True	NA	NA	NA	48406741	48407272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_48406700_48407300
transcript_95154.known	chr9	-	912	4	FSM	ENSMUSG00000032271.14	ENSMUST00000119426.2	912	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	21.5458168149231	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCAGTGCTCACTGTATG	NA	False	NA	10	True	ATTAAA	-33	NA	48516453	48503176	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_48503483_48503613_48503663_48514653_48514862_48516104
transcript_95156.known	chr9	-	1043	3	FSM	ENSMUSG00000032271.14	ENSMUST00000034808.12	1043	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	2.5	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCAGTGCTCACTGTATG	NA	False	NA	10	True	ATTAAA	-33	NA	48516453	48503176	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_48503663_48514653_48514862_48516104
transcript_95158.known	chr9	-	558	2	FSM	ENSMUSG00000032271.14	ENSMUST00000128076.2	558	2	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCAGATGAAAAATGCAAAAG	NA	False	NA	NA	False	NA	NA	NA	48516377	48514576	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_48514862_48516104
transcript_95159.known	chr9	-	1987	9	FSM	ENSMUSG00000032269.9	ENSMUST00000217289.2	1987	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	0.927024810886958	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCTGTCTGTGACCATTT	NA	False	NA	NA	False	AATAAA	-17	NA	48822321	48810512	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_48811291_48811860_48812083_48812173_48812385_48812717_48812879_48815876_48816047_48817582_48817693_48818653_48818699_48819894_48820062_48822198
transcript_95161.known	chr9	-	2082	9	FSM	ENSMUSG00000032269.9	ENSMUST00000003826.8	2082	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.11102430216445	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTCTGTCTGTGACCATT	NA	False	NA	NA	False	AATAAA	-16	NA	48822399	48810513	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_48811309_48811860_48812083_48812173_48812385_48812717_48812879_48815876_48816047_48817582_48817693_48818653_48818699_48819894_48820062_48822198
transcript_95162.known	chr9	+	4133	24	FSM	ENSMUSG00000032267.9	ENSMUST00000047349.8	4133	24	0	0	0	0	multi-exon	FALSE	canonical	3	612	junction_8	78.9995812484415	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTAGCATGACCCTTT	NA	False	NA	13	True	AATAAA	-19	NA	48896764	48953810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_48896838_48911650_48911729_48912807_48912941_48914290_48914397_48915122_48915283_48919728_48919816_48920395_48920534_48921542_48921617_48922562_48922643_48926401_48926551_48927981_48928110_48929671_48929768_48935205_48935386_48937067_48937289_48938118_48938190_48939372_48939602_48942026_48942222_48943513_48943654_48946892_48947072_48947181_48947261_48948476_48948557_48949067_48949192_48950281_48950478_48952673
transcript_95164.known	chr9	+	4109	24	FSM	ENSMUSG00000032267.9	ENSMUST00000213874.2	4109	24	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_12	166.491369690667	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTAGCATGACCCTTT	NA	False	NA	13	True	AATAAA	-19	NA	48896713	48953810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_48896838_48911650_48911729_48912807_48912941_48914290_48914397_48915122_48915283_48919728_48919816_48920395_48920534_48921542_48921617_48922562_48922643_48926401_48926551_48927981_48928110_48929671_48929768_48935280_48935386_48937067_48937289_48938118_48938190_48939372_48939602_48942026_48942222_48943513_48943654_48946892_48947072_48947181_48947261_48948476_48948557_48949067_48949192_48950281_48950478_48952673
transcript_95166.nnic	chr9	+	1557	13	NNC	ENSMUSG00000032267.9	novel	4109	24	NA	NA	-26	-963	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	223.298551396008	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGCTGCTTTCTTTGGCT	NA	False	NA	NA	False	AAAAAG	-4	NA	48896648	48934422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_48896838_48911650_48911729_48912807_48912941_48914290_48914397_48915122_48915283_48919728_48919816_48920395_48920534_48921542_48921617_48922562_48922643_48926401_48926551_48927981_48928110_48929671_48929768_48934283
transcript_95167.nnic	chr9	+	1550	13	NNC	ENSMUSG00000032267.9	novel	4109	24	NA	NA	-26	-963	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	223.298551396008	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGCTGCTTTCTTTGGCT	NA	False	NA	NA	False	AAAAAG	-4	NA	48896648	48934422	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_48896838_48911650_48911729_48912807_48912941_48914290_48914397_48915122_48915283_48919728_48919816_48920395_48920534_48921542_48921617_48922562_48922643_48926401_48926551_48927981_48928110_48929671_48929768_48934290
transcript_95170.nic	chr9	+	1210	8	ISM	ENSMUSG00000032267.9	ENSMUST00000213874.2	4109	24	-65	31949	-26	6652	5prime_fragment	FALSE	canonical	3	642	junction_4	87.5391457624321	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGACATGGTGTATGGTA	NA	False	NA	NA	False	ATTAAA	-22	NA	48896648	48921861	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_48896838_48911650_48911729_48912807_48912941_48914290_48914397_48915122_48915283_48919728_48919816_48920395_48920534_48921542
transcript_95171.known	chr9	+	489	4	FSM	ENSMUSG00000032267.9	ENSMUST00000215788.2	489	4	0	0	0	0	multi-exon	FALSE	canonical	2	26	junction_1	327.487743621379	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGAGAGTGGATGGTTGGC	NA	False	NA	NA	False	NA	NA	NA	48896674	48915209	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_48896838_48912807_48912941_48914290_48914397_48915122
transcript_95175.known	chr9	+	2863	16	FSM	ENSMUSG00000032264.10	ENSMUST00000034803.10	2863	16	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_12	29.9965923990635	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTGAGTGTCTTTAATAA	NA	False	NA	20	True	AGTAAA	-16	NA	48966912	48990072	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_48967088_48968942_48969078_48971869_48971972_48972167_48972246_48972354_48972515_48973492_48973646_48975309_48975502_48977978_48978143_48979959_48980143_48980873_48981113_48982881_48982954_48984502_48984673_48985318_48985450_48986204_48986337_48988751_48988955_48989498
transcript_95183.known	chr9	+	1272	5	FSM	ENSMUSG00000032264.10	ENSMUST00000215706.2	1272	5	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_4	30.2189923723476	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACATACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48967081	48973305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_48967088_48968942_48969078_48971869_48971972_48972167_48972246_48972354
transcript_95191.known	chr9	-	3628	22	FSM	ENSMUSG00000040219.5	ENSMUST00000055096.5	3628	22	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	5.49706167646225	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTCTCTTTCTTCT	NA	False	NA	NA	False	AAAACA	-45	NA	49397525	49348262	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_49349757_49351456_49351683_49353136_49353237_49354401_49354504_49355967_49356037_49356484_49356584_49357041_49357180_49357824_49357886_49359226_49359320_49364623_49364793_49367160_49367250_49368132_49368203_49369295_49369485_49369949_49370011_49371689_49371762_49378071_49378132_49381528_49381651_49382425_49382504_49383161_49383184_49383682_49383844_49395969_49396043_49397445
transcript_95194.known	chr9	-	1825	9	FSM	ENSMUSG00000040219.5	ENSMUST00000146666.2	1825	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	4.60977222864644	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCAGTGCATCTATTTTA	NA	False	NA	NA	False	ATTAAA	-36	NA	49397515	49368877	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_49369485_49369949_49370011_49371689_49371762_49378071_49378132_49381528_49381651_49382425_49382504_49383161_49383844_49395969_49396043_49397445
transcript_95195.known	chr9	-	914	2	FSM	ENSMUSG00000039542.17	ENSMUST00000217121.2	914	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8520	False	NA	NA	False	NA	NA	NA	49710222	49552889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_49553559_49709977
transcript_95203.nnic	chr9	-	714	2	Genic_Genomic	ENSMUSG00000058443.6	novel	768	1	NA	NA	-14	6	multi-exon	FALSE	canonical	0	0	junction_1	0	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAGGGAATCCCCTGAGC	NA	False	NA	NA	False	NA	NA	NA	50256282	50255494	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr9_-_50255585_50255658
transcript_95205.nnic	chr9	-	724	2	Genic_Genomic	ENSMUSG00000058443.6	novel	768	1	NA	NA	-16	-7	multi-exon	FALSE	canonical	0	0	junction_1	0	2511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGAAAAGAGACAGG	NA	False	NA	NA	False	AATAAA	-43	NA	50256284	50255507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr9_-_50255843_50255895
transcript_95208.known	chr9	-	768	1	FSM	ENSMUSG00000058443.6	ENSMUST00000076364.6	768	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	276418	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAGAGACAGGGAATCCC	NA	False	NA	NA	False	NA	NA	NA	50256268	50255500	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_50255500_50256300
transcript_9521.known	chr10	-	2693	15	FSM	ENSMUSG00000020166.16	ENSMUST00000168036.8	2693	15	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_13	136.561565692876	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTTGGCTTTGATTTGAA	NA	False	NA	-1	True	AATAAA	-23	NA	116417416	116321065	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116384937_116385081_116417357
transcript_95210.known	chr9	+	1689	4	FSM	ENSMUSG00000032068.15	ENSMUST00000114474.8	1689	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	3.39934634239519	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTTTTCTATACCGTCCA	NA	False	NA	NA	False	AATAAA	-17	NA	50405824	50416782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_50406047_50410394_50410600_50412372_50412429_50415576
transcript_95211.known	chr9	+	739	4	FSM	ENSMUSG00000032068.15	ENSMUST00000188047.2	739	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	20.0665559243899	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCATTTTGTTTTGTTTTTC	NA	False	NA	NA	False	ATTAAA	-10	NA	50405826	50413279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_50406047_50410394_50410600_50412372_50412429_50413021
transcript_95213.known	chr9	-	589	7	FSM	ENSMUSG00000032067.7	ENSMUST00000214213.2	589	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	52.7983585603441	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGTTTGAAACCGACAACA	7970	False	NA	NA	False	AGTAAA	-1	NA	50439940	50433558	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_50433637_50433828_50433900_50436022_50436080_50436452_50436585_50438169_50438250_50439445_50439533_50439856
transcript_95215.nic	chr9	-	1190	7	NIC	ENSMUSG00000032067.7	novel	589	7	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_6	39.4574313518872	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGTTTTCAGGATTTATT	7902	False	NA	NA	False	AATAAA	-18	NA	50440008	50432916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_50433637_50433828_50433900_50436022_50436080_50436561_50436585_50438169_50438250_50439445_50439533_50439856
transcript_95218.nic	chr9	-	1122	7	NIC	ENSMUSG00000032067.7	novel	589	7	NA	NA	-13	-67	combination_of_known_junctions	FALSE	canonical	3	38	junction_6	39.4574313518872	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCATTTGAGCAAAATGTT	7902	False	NA	NA	False	NA	NA	NA	50440008	50432984	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_50433637_50433828_50433900_50436022_50436080_50436561_50436585_50438169_50438250_50439445_50439533_50439856
transcript_95220.known	chr9	-	1046	6	FSM	ENSMUSG00000032067.7	ENSMUST00000034570.7	1046	6	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_5	16.1294761229248	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGTTTTCAGGATTTATT	7959	False	NA	NA	False	AATAAA	-18	NA	50439951	50432916	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_50433637_50433828_50433900_50436022_50436080_50436561_50436585_50438169_50438250_50439856
transcript_95229.known	chr9	-	439	4	FSM	ENSMUSG00000032067.7	ENSMUST00000215416.2	439	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	63.1259763400843	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACAGGCACATTTCTTTTC	7886	False	NA	NA	False	TATAAA	-29	NA	50440024	50433493	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_50433637_50433828_50433900_50436022_50436080_50439856
transcript_95234.known	chr9	-	895	5	FSM	ENSMUSG00000032065.7	ENSMUST00000034568.7	895	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_4	2.27760839478607	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATATTTCCATTTGATT	6977	False	NA	NA	False	AATAAA	-21	NA	50472610	50468224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_50468792_50469548_50469601_50469686_50469799_50470519_50470599_50472525
transcript_95243.known	chr9	-	1231	4	FSM	ENSMUSG00000000171.6	ENSMUST00000000175.6	1231	4	0	0	0	0	multi-exon	FALSE	canonical	3	1351	junction_3	46.783187863448	9424	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTATATAATGAAAATACAT	NA	False	NA	NA	False	AATAAA	-3	NA	50515112	50507656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_50508551_50510060_50510206_50511847_50511965_50515037
transcript_95244.known	chr9	-	732	7	FSM	ENSMUSG00000059820.15	ENSMUST00000155435.8	732	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	47.355921840181	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAATCACTTTCCCTTTA	89	False	NA	NA	False	AAAAAG	-17	NA	50528581	50518967	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_50519237_50520671_50520726_50521599_50521750_50523676_50523778_50526782_50526860_50527957_50527985_50528527
transcript_95251.known	chr9	+	1256	6	FSM	ENSMUSG00000000167.15	ENSMUST00000000171.15	1256	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	2.03960780543711	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTTATTTGGTGTTTTCA	NA	False	NA	NA	False	AATAAA	-37	NA	50528620	50536297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_50528899_50529745_50529950_50531054_50531179_50532244_50532491_50532920_50533187_50536159
transcript_95252.known	chr9	-	3316	6	FSM	ENSMUSG00000059820.15	ENSMUST00000131351.8	3316	6	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_5	32.2800247831379	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTCTGTTACTTTTTAA	NA	False	NA	-3	True	AATAAA	-17	NA	50528764	50516539	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_50519237_50520671_50520726_50521599_50521750_50523676_50523778_50526782_50526860_50528527
transcript_95253.known	chr9	-	1225	6	FSM	ENSMUSG00000059820.15	ENSMUST00000147671.2	1225	6	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_5	31.9023510105447	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAGAGCAAGAAAAAGTCC	106	False	NA	NA	False	NA	NA	NA	50528564	50519000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_50519237_50520671_50520726_50521599_50521750_50523676_50523778_50526782_50526860_50527957
transcript_95269.known	chr9	+	450	2	FSM	ENSMUSG00000000167.15	ENSMUST00000155773.2	450	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAATTCATACTTGGTAT	62	False	NA	NA	False	AGTAAA	-4	NA	50528820	50530117	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_50528899_50529745
transcript_95272.known	chr9	+	518	2	FSM	ENSMUSG00000039016.6	ENSMUST00000044051.6	518	2	0	0	0	0	multi-exon	FALSE	canonical	3	1341	junction_1	0	15273	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTGTTCTTCTAAATCCC	8813	False	NA	21	True	AATAAA	-15	NA	50515209	50516620	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_50515340_50516232
transcript_95274.known	chr9	-	4035	14	FSM	ENSMUSG00000000168.11	ENSMUST00000034567.4	4035	14	0	0	0	0	multi-exon	FALSE	canonical	3	1156	junction_6	75.3673449604703	528	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGATCTGTTGGTAGTT	NA	False	NA	-1	True	ATTAAA	-26	NA	50571080	50545932	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_50547855_50548755_50548893_50549220_50549384_50551523_50551640_50555325_50555434_50555740_50555834_50556338_50556407_50560931_50561074_50562050_50562239_50564921_50565049_50569144_50569299_50569464_50569590_50569987_50570090_50570490
transcript_95281.nic	chr9	-	2387	7	ISM	ENSMUSG00000032064.18	ENSMUST00000117646.8	5719	20	-332	29872	-332	840	5prime_fragment	FALSE	canonical	3	46	junction_1	1.77169096878911	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAAAATCCCTTTCTG	NA	False	NA	NA	False	NA	NA	NA	50639699	50603927	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_-_50604992_50606770_50606884_50613219_50613328_50614421_50614654_50617424_50617551_50622142_50622273_50639085
transcript_95284.known	chr9	-	989	2	FSM	ENSMUSG00000032064.18	ENSMUST00000118707.2	989	2	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCCTCCATGACATTCAGA	NA	False	NA	NA	False	NA	NA	NA	50639238	50621436	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_50622273_50639085
transcript_95285.known	chr9	-	1242	4	FSM	ENSMUSG00000032062.4	ENSMUST00000239417.2	1242	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	2.16024689946929	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGATTGATTGTTCCTG	2131	False	NA	NA	False	AATAAA	-17	NA	50657821	50650990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_50652050_50652595_50652661_50653560_50653599_50657741
transcript_95287.nnic	chr9	-	1265	3	NIC	ENSMUSG00000032062.4	novel	1257	4	NA	NA	-46	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	14	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGATTGATTGTTCCTG	2070	False	NA	NA	False	AATAAA	-17	NA	50657882	50650990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_50652050_50652595_50652661_50657741
transcript_95288.known	chr9	-	792	1	FSM	ENSMUSG00000032062.4	ENSMUST00000215877.2	792	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAAAATACAAAATAAA	2141	False	NA	NA	False	NA	NA	NA	50657811	50657019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_50657000_50657800
transcript_95291.nnic	chr9	+	1013	4	NNC	ENSMUSG00000032060.11	novel	1117	4	NA	NA	-4	0	intron_retention	FALSE	canonical	0	0	junction_1	8.33999733546453	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCCTCGTGTTTGCAAAC	NA	False	NA	NA	False	AATAAA	-20	NA	50662620	50667936	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_50662769_50664380_50664778_50665811_50665935_50667591
transcript_95293.known	chr9	+	1117	4	FSM	ENSMUSG00000032060.11	ENSMUST00000217475.2	1117	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	7.40870359029762	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCCTCGTGTTTGCAAAC	NA	False	NA	NA	False	AATAAA	-20	NA	50662624	50667936	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_50662877_50664380_50664778_50665811_50665935_50667591
transcript_95296.known	chr9	+	836	4	FSM	ENSMUSG00000032060.11	ENSMUST00000216755.2	836	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	6.0184900284226	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCCTCGTGTTTGCAAAC	NA	False	NA	NA	False	AATAAA	-20	NA	50664319	50667936	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_50664396_50664485_50664778_50665811_50665935_50667591
transcript_95298.known	chr9	+	946	3	FSM	ENSMUSG00000032060.11	ENSMUST00000034562.9	946	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	1.5	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGATTGAAAATCTGTGAC	NA	False	NA	NA	False	TTTAAA	-19	NA	50664206	50667843	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_50664778_50665811_50665935_50667591
transcript_95299.known	chr9	-	552	2	FSM	ENSMUSG00000038086.5	ENSMUST00000217159.2	552	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTTGTGCTGCTTCTGT	NA	False	NA	-7	True	AATAAA	-16	NA	50663654	50662377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_50662752_50663476
transcript_953.known	chr1	-	2938	11	FSM	ENSMUSG00000025935.11	ENSMUST00000027068.11	2938	11	0	0	0	0	multi-exon	FALSE	canonical	3	1226	junction_5	62.5811473208985	209	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGAGTCTATTTTTTGTAA	9656	False	NA	-9	True	ATTAAA	-15	NA	13660134	13634921	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_13636621_13639694_13639856_13640162_13640307_13642026_13642132_13642227_13642299_13646591_13646677_13648323_13648383_13649673_13649791_13649913_13650036_13651246_13651311_13659823
transcript_95300.known	chr9	-	773	2	FSM	ENSMUSG00000038086.5	ENSMUST00000042790.5	773	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTTGTGCTGCTTCTGT	NA	False	NA	-7	True	AATAAA	-16	NA	50663593	50662377	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_50663034_50663476
transcript_95301.known	chr9	+	585	2	FSM	ENSMUSG00000032060.11	ENSMUST00000216393.2	585	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCCTCGTGTTTGCAAAC	NA	False	NA	NA	False	AATAAA	-20	NA	50665694	50667936	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_50665935_50667591
transcript_95302.known	chr9	+	2873	15	FSM	ENSMUSG00000032059.14	ENSMUST00000034561.11	2873	15	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_3	29.092042533578	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTTTAAGATTTTTTTAA	NA	False	NA	24	True	TTTAAA	-31	NA	50686318	50754828	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_50686819_50687843_50687980_50690269_50690405_50694557_50694629_50699452_50699542_50700796_50700933_50703362_50703451_50703601_50703708_50711418_50711542_50713237_50713393_50716601_50716732_50717521_50717670_50719976_50720107_50733884_50734016_50754033
transcript_95305.known	chr9	+	2530	14	FSM	ENSMUSG00000032059.14	ENSMUST00000162073.8	2530	14	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_3	42.7472273227982	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAATGTTTCAGTCTGCT	NA	False	NA	38	True	TTTAAA	-45	NA	50686604	50754842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_50686819_50687843_50687980_50690269_50690405_50699452_50699542_50700796_50700933_50703362_50703451_50703601_50703708_50711418_50711542_50713237_50713393_50716601_50716732_50717521_50717670_50719976_50720107_50733884_50734016_50754033
transcript_95308.known	chr9	+	2658	5	FSM	ENSMUSG00000037845.15	ENSMUST00000042391.13	2658	5	0	0	0	0	multi-exon	TRUE	canonical	3	72	junction_2	7.15454401062709	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTGGAGCATGTGTCCTT	NA	False	NA	NA	False	NA	NA	NA	50679535	50684648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_50679756_50679987_50680145_50681409_50681614_50681931_50682091_50682730
transcript_9531.known	chr10	-	2268	14	FSM	ENSMUSG00000020166.16	ENSMUST00000105265.8	2268	14	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_12	150.969411847597	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGAATGTGTATATATTATA	NA	False	NA	-9	True	AATAAA	-12	NA	116417406	116321413	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116384937_116385081_116417357
transcript_95314.known	chr9	-	2082	4	FSM	ENSMUSG00000037971.11	ENSMUST00000042468.9	2082	4	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_2	3.74165738677394	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAATAAAAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50679752	50674127	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_50675317_50675523_50675591_50675995_50676227_50679157
transcript_95315.known	chr9	-	692	4	FSM	ENSMUSG00000037971.11	ENSMUST00000176238.2	692	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	12.5521135891752	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGCCCGGGAATCTGAAGAA	NA	False	NA	NA	False	NA	NA	NA	50679460	50675156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_50675317_50675523_50675591_50676064_50676227_50679157
transcript_95317.known	chr9	-	2761	6	FSM	ENSMUSG00000037971.11	ENSMUST00000176894.2	2761	6	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	11.2	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAATCTCTATTTGT	6987	False	NA	NA	False	AATAAA	-13	NA	50686820	50675026	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_50675317_50675523_50676227_50682100_50682259_50682451_50683356_50685284_50685347_50686176
transcript_95320.known	chr9	+	3430	15	FSM	ENSMUSG00000032058.15	ENSMUST00000114437.9	3430	15	0	0	0	0	multi-exon	FALSE	canonical	3	496	junction_13	51.8120622627431	229	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTAATTTCACAGTTTC	-13	True	NA	NA	False	NA	NA	NA	50768236	50792731	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_50768399_50769135_50769227_50770150_50770252_50772830_50773064_50773665_50773814_50777743_50777900_50778127_50778243_50778625_50778697_50778962_50779098_50781362_50781537_50784946_50785008_50789337_50789493_50789997_50790141_50790509_50790602_50791138
transcript_95324.known	chr9	-	1786	8	FSM	ENSMUSG00000060594.7	ENSMUST00000098782.4	1786	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.832993127835043	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTCTGTGTCTACAGCC	NA	False	NA	NA	False	AATAAA	-21	NA	50988394	50968079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_50968957_50970756_50970857_50973482_50973567_50974536_50974573_50979338_50979497_50985147_50985446_50987621_50987646_50988185
transcript_95326.known	chr9	-	1263	5	FSM	ENSMUSG00000079559.6	ENSMUST00000114427.4	1263	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.433012701892219	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTTGGGTTGTTTTTCTC	NA	False	NA	NA	False	AATAAA	-16	NA	51189854	51181557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_51182226_51183627_51183858_51185180_51185236_51188895_51188991_51189639
transcript_95334.known	chr9	-	875	4	FSM	ENSMUSG00000032051.10	ENSMUST00000034552.8	875	4	0	0	0	0	multi-exon	FALSE	canonical	3	440	junction_2	28.5929284186765	380	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGAGTGTGTTTGGTGAT	1037	False	NA	-5	True	AATAAA	-17	NA	51874846	51854605	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_51854950_51859876_51860007_51868372_51868498_51874570
transcript_95337.known	chr9	+	4380	14	FSM	ENSMUSG00000032050.19	ENSMUST00000000590.16	4380	14	0	0	0	0	multi-exon	FALSE	canonical	3	758	junction_13	85.8483594974439	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTTGGAGGTCCGCTGTT	NA	False	NA	15	True	AATAAA	-15	NA	51959414	52000029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_51959733_51972131_51972204_51974877_51974962_51976159_51976256_51976944_51977220_51978660_51978745_51979429_51979577_51980106_51980204_51980914_51981079_51984453_51984585_51992318_51992480_51993742_51993836_51996402_51996646_51997614
transcript_95339.nic	chr9	+	1243	10	ISM	ENSMUSG00000032050.19	ENSMUST00000061352.11	1502	11	-17	1976	-17	-1976	5prime_fragment	FALSE	canonical	3	794	junction_8	74.7202188909475	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAAGGAAAGAATAGAAC	NA	False	NA	24	True	NA	NA	NA	51959553	51984498	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_51959733_51972131_51972204_51974877_51974962_51976159_51976256_51976944_51977220_51978660_51978745_51979429_51979577_51980106_51980204_51980914_51981079_51984453
transcript_95341.nic	chr9	+	240	2	ISM	ENSMUSG00000032050.19	ENSMUST00000061352.11	1502	11	-17	14282	-17	-14282	5prime_fragment	FALSE	canonical	3	891	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCGAAGCCAGTAAGTGTG	NA	False	NA	NA	False	AAAAAG	-5	NA	51959553	51972192	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_51959733_51972131
transcript_95345.known	chr9	-	3128	18	FSM	ENSMUSG00000053289.9	ENSMUST00000065630.8	3128	18	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_8	33.3641956320396	2582	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTATTGTTTTTATTGTAT	NA	False	NA	-3	True	AATAAA	-17	NA	53159353	53009934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_53010563_53028452_53028590_53060802_53060860_53068470_53068633_53071197_53071318_53115358_53115831_53118765_53118855_53120988_53121077_53124535_53124638_53134959_53135045_53136772_53136936_53140424_53140552_53145127_53145318_53146562_53146684_53147699_53147859_53149347_53149479_53151776_53151838_53159117
transcript_95352.nnic	chr9	+	445	3	NNC	ENSMUSG00000034584.4	novel	5957	6	NA	NA	-172	-17610	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.5	13	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTTTCCTTGCTTTGTGGT	NA	False	NA	NA	False	AATAAA	-16	NA	53212797	53249324	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_53212883_53212984_53213152_53249131
transcript_95358.known	chr9	+	1055	7	FSM	ENSMUSG00000005131.5	ENSMUST00000217318.2	1055	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.06718737290547	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTACAGTTCCTCCTGG	NA	False	NA	NA	False	AAGAAA	-13	NA	53316597	53344020	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_53316722_53325638_53325693_53332868_53333070_53334187_53334319_53336822_53336994_53339434_53339491_53343702
transcript_95364.nic	chr9	-	1548	9	ISM	ENSMUSG00000034218.17	ENSMUST00000232179.2	9787	64	-187	79214	-187	3265	5prime_fragment	FALSE	canonical	3	33	junction_1	29.3428015022424	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGGAAAATAGACGTAGGC	NA	False	NA	NA	False	NA	NA	NA	53448227	53429881	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_-_53429970_53431291_53431456_53433347_53433587_53435646_53435813_53438472_53438638_53442930_53443077_53444959_53445073_53445164_53445267_53447862
transcript_95365.known	chr9	-	1243	7	FSM	ENSMUSG00000034218.17	ENSMUST00000132403.2	1243	7	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	25.1837690233655	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAAACTAGTGGCATTTC	NA	False	NA	NA	False	AATAAA	-8	NA	53447973	53433146	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_53433587_53435646_53435813_53438472_53438638_53442930_53443077_53444959_53445073_53445164_53445267_53447862
transcript_95369.nic	chr9	-	1343	6	ISM	ENSMUSG00000034218.17	ENSMUST00000132403.2	1243	7	-254	2214	-187	-2214	5prime_fragment	FALSE	canonical	3	46	junction_1	21.0770016843004	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCCTTAAAACAGACCAAAGA	NA	False	NA	NA	False	ATTAAA	-18	NA	53448227	53435360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_-_53435813_53438472_53438638_53442930_53443077_53444959_53445073_53445164_53445267_53447862
transcript_95376.nic	chr9	-	966	5	ISM	ENSMUSG00000034218.17	ENSMUST00000132403.2	1243	7	-254	5251	-187	96	5prime_fragment	FALSE	canonical	3	85	junction_4	8.07774721070176	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACGACTCAGAGTTTAAT	NA	False	NA	-3	True	AATAAA	-17	NA	53448227	53438397	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_-_53438638_53442930_53443077_53444959_53445073_53445164_53445267_53447862
transcript_95378.known	chr9	-	643	4	FSM	ENSMUSG00000034218.17	ENSMUST00000150244.2	643	4	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_3	8.83176086632785	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTCAGCAACAGTGGCTA	NA	False	NA	-99	True	NA	NA	NA	53447908	53438493	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_53438638_53442930_53443077_53444959_53445267_53447862
transcript_9538.nic	chr10	-	2408	13	NIC	ENSMUSG00000020166.16	novel	2800	16	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	67	junction_9	144.203246804255	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTGGCTTTGATT	NA	False	NA	-5	True	AATAAA	-19	NA	116417423	116321069	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116353221_116353289_116363731_116363855_116384937_116385081_116417357
transcript_95382.known	chr9	-	9787	64	FSM	ENSMUSG00000034218.17	ENSMUST00000232179.2	9787	64	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_13	19.494751895675	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGAGAGAGCATGTCACAC	NA	False	NA	32	True	NA	NA	NA	53448040	53350667	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_53351230_53351330_53351468_53352973_53353038_53353706_53353822_53355291_53355379_53356644_53356811_53359352_53359503_53361817_53361935_53362848_53362990_53364652_53364736_53364831_53364971_53365588_53365748_53366015_53366130_53367067_53367276_53367793_53368009_53368677_53368792_53370102_53370277_53371012_53371248_53372190_53372311_53372411_53372421_53373780_53373886_53375452_53375602_53376331_53376435_53376525_53376615_53379264_53379353_53382651_53382808_53384915_53385004_53390880_53391059_53391873_53392051_53393601_53393744_53395372_53395545_53397308_53397405_53398113_53398247_53399205_53399371_53399849_53400022_53401410_53401611_53402213_53402341_53403540_53403669_53404337_53404585_53405911_53406082_53407151_53407326_53408432_53408554_53410156_53410288_53410421_53410498_53411971_53412128_53412219_53412303_53414244_53414445_53415245_53415427_53417842_53417933_53419077_53419204_53421462_53421589_53423003_53423230_53424404_53424501_53426457_53426653_53427504_53427877_53429802_53429970_53431291_53431456_53433347_53433587_53435646_53435813_53438472_53438638_53442930_53443077_53444959_53445073_53445164_53445267_53447862
transcript_95385.known	chr9	-	3405	12	FSM	ENSMUSG00000032047.6	ENSMUST00000034547.6	3405	12	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_5	11.4912830779187	374	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACATTAAAGTTACAGA	NA	False	NA	NA	False	NA	NA	NA	53521682	53491821	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_53493966_53494736_53494895_53496139_53496205_53498752_53498867_53500477_53500574_53502606_53502758_53503267_53503412_53505705_53505807_53505993_53506090_53506582_53506701_53509384_53509433_53521512
transcript_95390.known	chr9	-	3585	19	FSM	ENSMUSG00000032030.17	ENSMUST00000034529.14	3585	19	0	0	0	0	multi-exon	FALSE	canonical	3	311	junction_17	44.7831882587348	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATGTGTGGGTATACG	NA	False	NA	57	True	AATGAA	-14	NA	53578811	53528323	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_53529311_53532459_53532584_53533157_53533277_53534081_53534244_53534934_53535111_53535457_53535582_53537162_53537295_53540474_53540608_53543572_53543638_53545031_53545140_53545284_53545416_53546271_53546366_53553817_53553899_53553980_53554127_53555786_53555929_53557966_53558144_53566571_53566672_53569870_53569981_53578337
transcript_95397.known	chr9	-	1589	8	FSM	ENSMUSG00000032030.17	ENSMUST00000123499.8	1589	8	0	0	0	0	multi-exon	FALSE	canonical	3	311	junction_6	63.8406818029164	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAATTTCCCCCAAGTT	NA	False	NA	NA	False	AGTAAA	-22	NA	53578787	53545208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_53545416_53546271_53546366_53553817_53554127_53555786_53555929_53557966_53558144_53566571_53566672_53569870_53569981_53578337
transcript_95399.known	chr9	+	516	2	FSM	ENSMUSG00000086914.2	ENSMUST00000146938.2	516	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGGGGTTCAAATTGGCT	NA	False	NA	NA	False	NA	NA	NA	53578545	53592565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_53578656_53592159
transcript_95400.known	chr9	-	2971	2	FSM	ENSMUSG00000055069.4	ENSMUST00000068449.4	2971	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAGAACATAAATTAT	NA	False	NA	NA	False	NA	NA	NA	53617532	53595409	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_53598037_53617188
transcript_95403.known	chr9	-	750	1	FSM	ENSMUSG00000082465.2	ENSMUST00000118010.2	750	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1323	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCTTTAAGAGCAACAAATA	8765	False	NA	NA	False	NA	NA	NA	53601583	53600833	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_53600800_53601600
transcript_95405.known	chr9	+	2558	8	FSM	ENSMUSG00000042195.10	ENSMUST00000048670.10	2558	8	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_1	9.10931346681706	549	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAAGTAGAATCACAATGT	NA	False	NA	39	True	ATTAAA	-15	NA	53678821	53725438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_53679179_53705121_53705298_53708294_53708423_53713901_53714062_53715329_53715487_53716969_53717023_53718158_53718314_53724066
transcript_95406.nnic	chr9	-	937	3	Antisense	novelGene_ENSMUSG00000042045.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	15	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTCCTTCTAAAATGTC	NA	False	NA	NA	False	AATAAA	-22	NA	53788491	53754535	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr9_-_53755253_53777088_53777180_53788362
transcript_95415.known	chr9	-	1433	6	FSM	ENSMUSG00000037493.7	ENSMUST00000041901.7	1433	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	2.4	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCACTCTCCGTGTCTGTCA	6916	False	NA	NA	False	AATAAA	-20	NA	54467502	54452077	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_54452769_54453172_54453369_54455616_54455765_54457064_54457177_54461770_54461806_54467251
transcript_95419.known	chr9	+	1812	12	FSM	ENSMUSG00000032279.12	ENSMUST00000215273.2	1812	12	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	727.622881616047	415	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATGAATGATGTAATTTT	NA	False	NA	55	True	AATAAA	-22	NA	54493764	54511229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_54493828_54497141_54497205_54499444_54499540_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
transcript_95427.known	chr9	+	3003	7	FSM	ENSMUSG00000032285.16	ENSMUST00000070070.8	3003	7	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	1.95078331845327	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAATGGCTTTGCTTTTTCT	NA	False	NA	NA	False	ATTAAA	-18	NA	54606842	54623599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_54607145_54613346_54613528_54615666_54615772_54616416_54616645_54617785_54618017_54621553_54621655_54621744
transcript_95429.known	chr9	-	1290	11	FSM	ENSMUSG00000061559.16	ENSMUST00000121204.8	1290	11	0	0	0	0	multi-exon	FALSE	canonical	3	544	junction_10	185.351584832717	4045	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCACCTGCATTTGTGAAC	5421	False	NA	-8	True	AATAAA	-14	NA	54641803	54624447	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117_54630212_54631334_54631429_54631609_54631759_54634872_54635046_54635453_54635560_54637917_54637946_54638670_54638722_54641652
transcript_95430.known	chr9	-	1162	11	FSM	ENSMUSG00000061559.16	ENSMUST00000130368.8	1162	11	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_9	343.30050975785	469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCATTTGTGAACGTGCT	5443	False	NA	-3	True	AATAAA	-19	NA	54641781	54624442	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117_54630212_54631334_54631429_54631609_54631759_54634872_54635046_54635453_54635560_54637917_54637941_54638670_54638722_54641758
transcript_95435.known	chr9	+	802	4	FSM	ENSMUSG00000032291.9	ENSMUST00000034830.9	802	4	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_3	35.3679076125361	2573	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCGGGCTCTTTCTTTGA	NA	False	NA	18	True	ATTAAA	-14	NA	54672031	54680394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_54672256_54672766_54672946_54675667_54675782_54680109
transcript_95439.known	chr9	+	5770	22	FSM	ENSMUSG00000032293.9	ENSMUST00000034843.9	5770	22	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_6	38.4690587449917	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGACTCGTTGTGTTTTAT	2626	False	NA	14	True	AATAAA	-19	NA	54771072	54819814	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_54771181_54772590_54772681_54788636_54788803_54789602_54789741_54791180_54791400_54793158_54793229_54793773_54793958_54794551_54794692_54798286_54798459_54799758_54799857_54802662_54802780_54803723_54803884_54804770_54804907_54806671_54806757_54807233_54807391_54807731_54807857_54811174_54811280_54811378_54811522_54813852_54814001_54814084_54814208_54816025_54816212_54816914
transcript_95445.nic	chr9	+	2469	16	ISM	ENSMUSG00000032293.9	ENSMUST00000034843.9	5770	22	-104	11758	-104	-3215	5prime_fragment	TRUE	canonical	3	193	junction_6	41.0542188926898	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAATTTTTATGGCTGAGT	2522	False	NA	NA	False	AATAAA	-18	NA	54770968	54808056	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_54771181_54772590_54772681_54788636_54788803_54789602_54789741_54791180_54791400_54793158_54793229_54793773_54793958_54794551_54794692_54798286_54798459_54799758_54799857_54802662_54802780_54803723_54803884_54804770_54804907_54806671_54806757_54807233_54807391_54807731
transcript_95448.nic	chr9	+	908	4	ISM	ENSMUSG00000032293.9	ENSMUST00000034843.9	5770	22	-104	29772	-104	-21229	5prime_fragment	FALSE	canonical	3	205	junction_3	10.3387082795139	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTTGAGTCAGGATATTG	2522	False	NA	NA	False	AATGAA	-40	NA	54770968	54790042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_54771181_54772590_54772681_54788636_54788803_54789602
transcript_95449.known	chr9	+	5110	5	FSM	ENSMUSG00000035878.14	ENSMUST00000039742.8	5110	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	1.29903810567666	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCTTTTGGTCTTTTTTTC	NA	False	NA	13	True	ATTAAA	-26	NA	54824566	54857208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_54825143_54827757_54828109_54829478_54829619_54844422_54844607_54853349
transcript_95454.known	chr9	+	1165	9	FSM	ENSMUSG00000032301.14	ENSMUST00000034848.14	1165	9	0	0	0	0	multi-exon	FALSE	canonical	3	1650	junction_8	116.746252616519	11439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTATGGTGAAAGGATACTT	NA	False	NA	2	True	AATAAA	-15	NA	54858073	54865314	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_54858188_54859365_54859393_54859624_54859668_54859962_54860126_54861946_54862025_54862164_54862254_54863540_54863672_54864094_54864219_54864918
transcript_95455.known	chr9	+	562	6	FSM	ENSMUSG00000032301.14	ENSMUST00000169008.8	562	6	0	0	0	0	multi-exon	FALSE	canonical	3	1724	junction_4	75.8957179292745	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTTTGTTCTGCTTTA	NA	False	NA	NA	False	AATAAA	-8	NA	54858088	54862316	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_54858188_54859365_54859393_54859624_54859668_54859962_54860126_54861946_54862025_54862164
transcript_95457.known	chr9	+	3456	13	FSM	ENSMUSG00000032307.17	ENSMUST00000059555.15	3456	13	0	0	0	0	multi-exon	TRUE	canonical	3	762	junction_1	63.2035402489449	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCACCTTTCCCTCTT	NA	False	NA	10	True	AATAAA	-18	NA	55056137	55114813	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_55057111_55070251_55070354_55075486_55075592_55083474_55083532_55087756_55087898_55090385_55090471_55092187_55092249_55092953_55093045_55099125_55099185_55102270_55102320_55102707_55102804_55110984_55111052_55113243
transcript_95459.known	chr9	+	2081	13	FSM	ENSMUSG00000032307.17	ENSMUST00000122441.2	2081	13	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	238.508371038745	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATTATGAAAGATACCTA	NA	False	NA	NA	False	AATAAA	-39	NA	55057366	55114092	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_55057686_55070251_55070354_55075486_55075592_55083474_55083532_55087756_55087898_55090385_55090471_55092187_55092249_55092953_55093045_55099125_55099185_55102270_55102320_55102707_55102804_55110984_55111052_55113243
transcript_95471.nnic	chr9	-	792	7	NNC	ENSMUSG00000032311.18	novel	1145	11	NA	NA	-8558	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	7.27247474309048	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCTGCTTGATTCCTCTA	5528	False	NA	-1	True	NA	NA	NA	55199467	55128581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_55128693_55133899_55134039_55135136_55135223_55143723_55143804_55149344_55149492_55189834_55189901_55199304
transcript_95476.known	chr9	-	721	6	FSM	ENSMUSG00000032311.18	ENSMUST00000144939.8	721	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	7.93977329651168	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCCACGGGGGAAGAGCAAA	247	False	NA	75	True	TTTAAA	-43	NA	55149745	55128505	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_55128693_55133899_55134039_55135136_55135223_55143723_55143804_55149344_55149492_55149663
transcript_95477.nnic	chr9	-	711	6	NNC	ENSMUSG00000032311.18	novel	1145	11	NA	NA	-8543	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_5	6.62117814289874	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCTGCTTGATTCCTCTA	5543	False	NA	-1	True	NA	NA	NA	55199452	55128581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_55128693_55133899_55134039_55135136_55135223_55143723_55143804_55149344_55149492_55199304
transcript_95485.known	chr9	+	2112	7	FSM	ENSMUSG00000032309.16	ENSMUST00000034859.15	2112	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	369.828526331987	3023	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGTTGTAATTATTGCT	NA	False	NA	11	True	AATAAA	-18	NA	55116208	55131717	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_55116473_55116636_55116776_55121192_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523
transcript_95486.known	chr9	+	1921	7	FSM	ENSMUSG00000032309.16	ENSMUST00000140375.8	1921	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	472.947759623971	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACTCAACTGGTGTTGTA	NA	False	NA	2	True	AATAAA	-9	NA	55116271	55131708	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_55116473_55116636_55116776_55121192_55121281_55122186_55122283_55125717_55125764_55128305_55128472_55130523
transcript_95487.known	chr9	+	2009	6	FSM	ENSMUSG00000032309.16	ENSMUST00000146201.8	2009	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	392.751626349274	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGGTGTTGTAATTATTG	NA	False	NA	9	True	AATAAA	-16	NA	55116473	55131715	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_55116776_55121192_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523
transcript_95498.known	chr9	-	1392	12	FSM	ENSMUSG00000032314.15	ENSMUST00000034866.9	1392	12	0	0	0	0	multi-exon	FALSE	canonical	3	1517	junction_8	89.5680174619608	5776	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTACTATCAGAAACATGC	NA	False	NA	-13	True	AATAAA	-30	NA	55419527	55361791	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_55362047_55368903_55368985_55372077_55372144_55389556_55389640_55392553_55392623_55393985_55394088_55394683_55394795_55396113_55396214_55402845_55402929_55403025_55403108_55407301_55407449_55419314
transcript_95499.known	chr9	-	487	5	FSM	ENSMUSG00000032314.15	ENSMUST00000139342.2	487	5	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	685.923601795419	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTATGATTTATTACT	NA	False	NA	NA	False	ATTAAA	-33	NA	55394797	55381820	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_55381940_55389556_55389640_55392553_55392623_55393985_55394088_55394683
transcript_95501.nic	chr9	-	1347	8	ISM	ENSMUSG00000034007.11	ENSMUST00000217647.2	4370	33	-75	340913	-66	-148051	5prime_fragment	FALSE	canonical	3	54	junction_7	7.32343178170074	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTCCTAGATTCTCCCT	NA	False	NA	NA	False	AATAAA	-19	NA	55845469	55798963	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_-_55799573_55802565_55802667_55819323_55819519_55822183_55822255_55823270_55823389_55826807_55826872_55828549_55828623_55845353
transcript_95507.known	chr9	+	2024	7	FSM	ENSMUSG00000032320.8	ENSMUST00000114276.3	2024	7	0	0	0	0	multi-exon	FALSE	canonical	3	320	junction_5	26.0666879795309	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGTGCACCTGAGACATTT	960	False	NA	18	True	ATTAAA	-19	NA	55949140	55966361	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_55949489_55949858_55949965_55952415_55952613_55960190_55960305_55963442_55963540_55964710_55964854_55965342
transcript_95513.known	chr9	+	1863	15	FSM	ENSMUSG00000032322.15	ENSMUST00000059206.8	1863	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_9	2.96922995583236	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCTTCCTTTGCTGGGGT	NA	False	NA	NA	False	AATAAA	-27	NA	55997245	56036172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_55997729_56021513_56021615_56022346_56022422_56027584_56027620_56027830_56027938_56030042_56030106_56030545_56030645_56031031_56031078_56031877_56031958_56032407_56032507_56033210_56033308_56033865_56033957_56034768_56034822_56035010_56035145_56035872
transcript_95515.known	chr9	-	1716	7	FSM	ENSMUSG00000032324.12	ENSMUST00000034876.10	1716	7	0	0	0	0	multi-exon	FALSE	canonical	3	718	junction_1	24.1522945769824	2149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATGTACATTTTAATTATT	NA	False	NA	-3	True	AATAAA	-17	NA	56068341	56043167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_56044020_56052772_56052857_56053058_56053212_56053797_56053900_56054369_56054445_56054670_56054863_56068083
transcript_95523.known	chr9	-	6996	7	FSM	ENSMUSG00000074305.10	ENSMUST00000061552.15	6996	7	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_4	5.42883249163411	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGAGTGAGAACTGCAGAA	NA	False	NA	-8	True	NA	NA	NA	56325351	56112412	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_56114896_56134385_56135129_56148443_56148629_56164810_56168047_56225946_56226105_56281659_56281724_56325224
transcript_95524.known	chr9	+	3778	10	FSM	ENSMUSG00000032329.5	ENSMUST00000034879.5	3778	10	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_9	43.8482230730809	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGTGACCAGTTTTGCT	NA	False	NA	11	True	ATTAAA	-17	NA	56325892	56404220	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_56326216_56374641_56374735_56381814_56381960_56384465_56384679_56388881_56389015_56389891_56389924_56394899_56394976_56395897_56396114_56397105_56397249_56401816
transcript_95525.nnic	chr9	+	1240	9	NNC	ENSMUSG00000032329.5	novel	1700	9	NA	NA	-3	-560	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_8	69.7423830966508	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTAGTGTCATGATTTTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	56326095	56397005	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_56326216_56374641_56374735_56381814_56381960_56384465_56384679_56388881_56389015_56389891_56389924_56394899_56394976_56395897_56396114_56396793
transcript_95526.known	chr9	+	1700	9	FSM	ENSMUSG00000032329.5	ENSMUST00000215269.2	1700	9	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_3	23.7276210354093	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTCTCTTCCCTGATGAG	NA	False	NA	NA	False	AATAAA	-18	NA	56325927	56397609	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_56326216_56374641_56374735_56381814_56381960_56384465_56384679_56388881_56389015_56389891_56389924_56394899_56394976_56395897_56396114_56397105
transcript_95530.known	chr9	+	2468	8	FSM	ENSMUSG00000032329.5	ENSMUST00000217518.2	2468	8	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_3	24.8160580006954	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATAGTTCTCAGAACA	NA	False	NA	NA	False	NA	NA	NA	56326107	56397565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_56326216_56374641_56374735_56381814_56381960_56384465_56384679_56388881_56389015_56389891_56389924_56394899_56394976_56395897
transcript_95533.nnic	chr9	+	932	2	Genic_Genomic	ENSMUSG00000118653.2	novel	988	1	NA	NA	-30	-5	multi-exon	FALSE	canonical	0	0	junction_1	0	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAAAACAT	NA	False	NA	NA	False	AATAAA	-28	NA	56344710	56345723	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr9_+_56344777_56344857
transcript_95534.known	chr9	+	988	1	FSM	ENSMUSG00000118653.2	ENSMUST00000239472.2	988	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2876	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAAAACATATGGT	NA	False	NA	NA	False	AATAAA	-33	NA	56344740	56345728	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_56344700_56345700
transcript_95535.nnic	chr9	+	648	5	NNC	ENSMUSG00000097870.3	novel	2655	3	NA	NA	-44	4698	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	1.78535710713571	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTACAGAGGAAGTTTGTAA	NA	False	NA	NA	False	CATAAA	-25	NA	56513932	56526455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_56514031_56516243_56516370_56519300_56519506_56524511_56524549_56526273
transcript_95536.nnic	chr9	+	646	5	NNC	ENSMUSG00000097870.3	novel	2655	3	NA	NA	-24	4698	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	2.04633819296811	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTACAGAGGAAGTTTGTAA	NA	False	NA	NA	False	CATAAA	-25	NA	56513952	56526455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_56514031_56516225_56516370_56519300_56519506_56524511_56524549_56526273
transcript_95537.nnic	chr9	+	517	4	NNC	ENSMUSG00000097870.3	novel	2655	3	NA	NA	-39	4698	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	2.44948974278318	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTACAGAGGAAGTTTGTAA	NA	False	NA	NA	False	CATAAA	-25	NA	56513937	56526455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_56514031_56519300_56519506_56524511_56524549_56526273
transcript_95539.known	chr9	+	2655	3	FSM	ENSMUSG00000097870.3	ENSMUST00000181927.3	2655	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATGAATGCTATGGTTA	NA	False	NA	NA	False	NA	NA	NA	56513976	56521757	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_56514031_56516225_56516370_56519300
transcript_95541.nnic	chr9	+	522	4	NNC	ENSMUSG00000097870.3	novel	2655	3	NA	NA	-44	4698	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	2.44948974278318	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTACAGAGGAAGTTTGTAA	NA	False	NA	NA	False	CATAAA	-25	NA	56513932	56526455	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_56514031_56519300_56519506_56524511_56524549_56526273
transcript_95544.known	chr9	+	924	1	FSM	ENSMUSG00000032288.10	ENSMUST00000034827.10	924	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2592	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTTGTCTGGTCGTTCT	NA	False	NA	18	True	AATAAA	-27	NA	56844758	56845682	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_56844800_56845700
transcript_9555.known	chr10	-	1044	5	FSM	ENSMUSG00000020166.16	ENSMUST00000165527.8	1044	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	182.821463455471	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTCTGTTTAACCAAGAT	NA	False	NA	NA	False	AATAAA	-21	NA	116417401	116345695	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_116346363_116353221_116353289_116363731_116363855_116384937_116385081_116417357
transcript_95552.known	chr9	+	1391	9	FSM	ENSMUSG00000055334.5	ENSMUST00000068856.5	1391	9	0	0	0	0	multi-exon	TRUE	canonical	3	166	junction_1	20.9105236663265	1026	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTGTGGTTATTCGG	NA	False	NA	8	True	AATATA	-19	NA	56858161	56890490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_56858238_56864297_56864461_56870279_56870428_56877537_56877643_56877873_56877971_56882496_56882595_56885302_56885381_56888128_56888210_56889945
transcript_9556.known	chr10	+	676	2	FSM	ENSMUSG00000052291.9	ENSMUST00000219273.2	676	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTCGCACCGAAAACTTC	NA	False	NA	NA	False	AATAAA	-34	NA	116417480	116419419	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_116417628_116418890
transcript_95566.nnic	chr9	-	836	4	NNC	ENSMUSG00000074284.7	novel	1241	3	NA	NA	-4	-270	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2.16024689946929	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTATCTCCACTGTGTCCT	NA	False	NA	NA	False	ATTAAA	-18	NA	56979254	56964183	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_56964423_56964949_56965086_56965225_56965303_56978870
transcript_95569.known	chr9	-	1241	3	FSM	ENSMUSG00000074284.7	ENSMUST00000128125.2	1241	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTACAGACTGAAACAGGATC	NA	False	NA	NA	False	NA	NA	NA	56979091	56963913	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_56964423_56964552_56965086_56978892
transcript_9557.known	chr10	+	918	4	FSM	ENSMUSG00000097104.2	ENSMUST00000181656.2	918	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCTACCTGACTCCGAGG	1445	False	NA	NA	False	NA	NA	NA	116510495	116515208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_116510787_116511802_116511918_116514407_116514569_116514857
transcript_95571.known	chr9	-	957	2	FSM	ENSMUSG00000074284.7	ENSMUST00000135527.2	957	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAATCCTTTATTCAG	NA	False	NA	NA	False	AATAAA	-40	NA	56979250	56964486	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_56965086_56978892
transcript_95574.known	chr9	+	3820	26	FSM	ENSMUSG00000032295.16	ENSMUST00000160147.8	3820	26	0	0	0	0	multi-exon	FALSE	canonical	2	160	junction_17	33.744593641056	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCATGCAGCCAGCCTTTC	NA	False	NA	NA	False	ATTAAA	-16	NA	57037973	57050006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_57038174_57038442_57038566_57038815_57038940_57040805_57040877_57042373_57042552_57042728_57042919_57043976_57044084_57044241_57044353_57044565_57044659_57044752_57044870_57045028_57045125_57045203_57045350_57045680_57045805_57046131_57046254_57046352_57046439_57046529_57046686_57046894_57046993_57047153_57047249_57047482_57047588_57047665_57047823_57047918_57048063_57048384_57048495_57048589_57048670_57048847_57048997_57049089_57049200_57049278
transcript_95580.known	chr9	+	545	5	FSM	ENSMUSG00000032295.16	ENSMUST00000161393.8	545	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	114.614571499439	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCTAGAACTCACTATGTA	NA	False	NA	NA	False	NA	NA	NA	57037973	57041439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_57038174_57038442_57038570_57038815_57038940_57040805_57040877_57041416
transcript_95582.nnic	chr9	+	1106	2	NNC	ENSMUSG00000042557.15	novel	5086	21	NA	NA	-42	-211	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGCTCTAGCTTCTTGT	NA	False	NA	21	True	ATTAAA	-25	NA	56983617	57035437	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_56983760_57034473
transcript_95583.nnic	chr9	+	1326	2	NNC	ENSMUSG00000042557.15	novel	5086	21	NA	NA	-42	7	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCTTGTCCTCTCCAAAG	NA	False	NA	NA	False	AATAAA	-31	NA	56983617	57035657	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_56983760_57034473
transcript_95584.nic	chr9	+	1336	2	ISM	ENSMUSG00000032295.16	ENSMUST00000161393.8	545	5	32	1829	32	1073	intron_retention	FALSE	canonical	3	206	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAACAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	57038005	57039610	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_57038174_57038442
transcript_95585.known	chr9	-	841	2	FSM	ENSMUSG00000086728.3	ENSMUST00000142077.3	841	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAAAGTCCCTTGTTTTAT	NA	False	NA	NA	False	ATTAAA	-19	NA	57038528	57037266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_57037412_57037832
transcript_95586.known	chr9	+	4845	20	FSM	ENSMUSG00000042557.15	ENSMUST00000049169.6	4845	20	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_9	35.0166561080031	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATAAGTCCCTTGTCCTC	NA	False	NA	NA	False	AATAAA	-24	NA	56993864	57035650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025447_57026376_57026472_57032452_57032661_57034431
transcript_95587.known	chr9	+	3215	26	FSM	ENSMUSG00000032295.16	ENSMUST00000034836.16	3215	26	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	55.7568148301174	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACTATAATGGTGCCTTG	NA	False	NA	13	True	AATAAA	-14	NA	57038053	57049487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_57038174_57038442_57038566_57038815_57038940_57040805_57040877_57042373_57042552_57042728_57042919_57043976_57044084_57044241_57044353_57044565_57044659_57044752_57044870_57045028_57045125_57045203_57045350_57045680_57045805_57046137_57046254_57046352_57046439_57046529_57046686_57046894_57046993_57047153_57047249_57047482_57047588_57047665_57047823_57047918_57048063_57048384_57048495_57048589_57048670_57048847_57048997_57049089_57049200_57049278
transcript_9559.nnic	chr10	+	812	3	NIC	ENSMUSG00000097104.2	novel	918	4	NA	NA	-9	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCTACCTGACTCCGAGG	1436	False	NA	NA	False	NA	NA	NA	116510486	116515208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_+_116510787_116514407_116514569_116514857
transcript_95591.known	chr9	-	1601	10	FSM	ENSMUSG00000032298.14	ENSMUST00000186410.7	1601	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_9	6.09391520035648	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGGTCTTTCTGCTCCAT	NA	False	NA	NA	False	NA	NA	NA	57055589	57050353	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_57050611_57050734_57050898_57051041_57051104_57051262_57051291_57051470_57051599_57051921_57052022_57052228_57052293_57052381_57052502_57053884_57054342_57055367
transcript_9560.known	chr10	-	1844	11	FSM	ENSMUSG00000064181.7	ENSMUST00000219109.2	1844	11	0	0	0	0	multi-exon	TRUE	canonical	3	251	junction_7	35.031985384788	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGCGTGTGTCTTTCTTA	NA	False	NA	-7	True	AATAAA	-10	NA	116786336	116742681	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_116743024_116746029_116746100_116746186_116746287_116750001_116750115_116751748_116751878_116754666_116754871_116755478_116755557_116764093_116764190_116773301_116773561_116775105_116775387_116786164
transcript_95603.known	chr9	-	1941	7	FSM	ENSMUSG00000032299.11	ENSMUST00000214072.2	1941	7	0	0	0	0	multi-exon	FALSE	canonical	3	898	junction_5	106.241470245851	937	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGGGTCTTGCTTGCTTTT	6331	False	NA	0	True	AATAAA	-19	NA	57065561	57062318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_57062565_57062695_57062873_57063185_57063267_57063455_57063576_57063799_57063840_57064058_57064125_57064350
transcript_95604.known	chr9	-	858	8	FSM	ENSMUSG00000032299.11	ENSMUST00000065358.9	858	8	0	0	0	0	multi-exon	FALSE	canonical	3	701	junction_7	157.218553197095	3916	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTATGGGTCTTGCTTGC	6277	False	NA	-4	True	AATAAA	-15	NA	57065615	57062322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_57062565_57062695_57062873_57063185_57063267_57063455_57063576_57063799_57063840_57064058_57064125_57064350_57064423_57065555
transcript_95605.known	chr9	-	703	7	FSM	ENSMUSG00000032299.11	ENSMUST00000214640.2	703	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	493.360725590876	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTTTTATAGGCAAGAAGA	7469	False	NA	-43	True	AAGAAA	-13	NA	57064423	57062361	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_57062565_57062695_57062873_57063185_57063267_57063455_57063576_57063799_57063840_57064033_57064043_57064350
transcript_95606.known	chr9	-	579	4	FSM	ENSMUSG00000032299.11	ENSMUST00000214174.2	579	4	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_3	505.386980441721	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGTATGGGTCTTGCTT	8385	False	NA	-6	True	AATAAA	-13	NA	57063507	57062324	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_57062565_57062695_57062873_57063185_57063296_57063455
transcript_95607.known	chr9	-	4152	3	FSM	ENSMUSG00000032300.8	ENSMUST00000034846.7	4152	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	39.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGATCTAGCTTTGTAC	NA	False	NA	-7	True	ATTAAA	-21	NA	57169895	57160399	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_57161613_57163668_57166424_57169711
transcript_95608.known	chr9	-	625	2	FSM	ENSMUSG00000032300.8	ENSMUST00000214583.2	625	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATATGAGGCTGAGCCCAC	NA	False	NA	NA	False	NA	NA	NA	57169882	57161158	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_57161613_57169711
transcript_95610.known	chr9	+	627	1	FSM	ENSMUSG00000066626.6	ENSMUST00000085711.6	627	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTCATGCATAGTGTAATA	NA	False	NA	NA	False	NA	NA	NA	57241410	57242037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_57241400_57242000
transcript_9562.known	chr10	-	2690	10	FSM	ENSMUSG00000064181.7	ENSMUST00000020375.7	2690	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_7	97.8627156332334	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAGAGGTTGGGTTATTTT	NA	False	NA	-5	True	ATTAAA	-16	NA	116786285	116741688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_116743024_116746029_116746100_116746186_116746287_116750001_116750115_116751748_116751878_116754666_116754871_116755478_116755557_116773301_116773561_116775105_116775387_116786164
transcript_95620.known	chr9	-	2744	7	FSM	ENSMUSG00000063849.7	ENSMUST00000085709.6	2744	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	42.49607825043	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTGTGAAACCTGTGAGT	NA	False	NA	NA	False	AATAAA	-20	NA	57347379	57319935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_57322010_57322368_57322538_57327445_57327575_57328408_57328505_57342185_57342369_57344699_57344766_57347352
transcript_95622.known	chr9	-	1665	7	FSM	ENSMUSG00000063849.7	ENSMUST00000216365.2	1665	7	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	15.2059929706094	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGACTGTGTCCTTCTTTA	NA	False	NA	-4	True	AATAAA	-17	NA	57347390	57321243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_57322010_57322368_57322756_57327445_57327575_57328408_57328505_57342185_57342369_57344699_57344766_57347352
transcript_95630.nic	chr9	-	1263	5	NIC	ENSMUSG00000063849.7	novel	1665	7	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	2	12	junction_2	55.6169938058504	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGACTGTGTCCTTCTTTA	NA	False	NA	-4	True	AATAAA	-17	NA	57347431	57321243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_57322010_57322368_57322538_57342185_57342369_57344699_57344766_57347352
transcript_95632.known	chr9	-	1025	7	FSM	ENSMUSG00000040722.8	ENSMUST00000214256.2	1025	7	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_6	45.7262385167301	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTGGGGGCCAGTGGGAC	NA	False	NA	NA	False	NA	NA	NA	57375343	57350928	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_57351148_57352654_57352773_57353354_57353457_57354359_57354517_57358638_57358768_57359262_57359318_57375098
transcript_95633.known	chr9	-	3225	7	FSM	ENSMUSG00000040722.8	ENSMUST00000046587.8	3225	7	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_3	41.0680329859288	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTCTGTGTTACTTGT	NA	False	NA	0	True	AATAAA	-20	NA	57375341	57348609	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_57351148_57352654_57352773_57353354_57353457_57354359_57354517_57358638_57358768_57359262_57359318_57375215
transcript_95638.known	chr9	-	675	6	FSM	ENSMUSG00000040722.8	ENSMUST00000215734.2	675	6	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	25.4715527598927	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAACTACACGTACTCCAAT	NA	False	NA	NA	False	NA	NA	NA	57375320	57350981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_57351148_57352654_57352773_57353354_57353457_57358638_57358768_57359262_57359318_57375215
transcript_95643.nnic	chr9	+	1355	2	Genic_Genomic	ENSMUSG00000062309.9	novel	1423	1	NA	NA	-2	0	multi-exon	FALSE	canonical	3	12	junction_1	0	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTCTTCAGTTTTGTTC	NA	False	NA	12	True	AATAAA	-17	NA	57411306	57412731	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr9_+_57411538_57411607
transcript_95644.nnic	chr9	-	565	2	Antisense	novelGene_ENSMUSG00000062309.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_1	0	107	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCGACTCAAGCCTGGTCC	9608	False	NA	3	True	AATAAA	-21	NA	57411771	57411061	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr9_-_57411351_57411495
transcript_95646.known	chr9	+	1423	1	FSM	ENSMUSG00000062309.9	ENSMUST00000080514.9	1423	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1430	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTCTTCAGTTTTGTTC	NA	False	NA	12	True	AATAAA	-17	NA	57411308	57412731	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_57411300_57412700
transcript_9565.known	chr10	-	443	1	FSM	ENSMUSG00000111966.2	ENSMUST00000219792.2	443	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3840	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGCCAATAAAGACTGGTT	NA	False	NA	NA	False	NA	NA	NA	116809113	116808670	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_116808700_116809100
transcript_95659.known	chr9	+	3017	5	FSM	ENSMUSG00000032305.16	ENSMUST00000114200.10	3017	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	22.8582589013249	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCTGTACTGTGCTGCA	NA	False	NA	14	True	AATAAA	-14	NA	57444845	57450467	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_57445118_57445306_57445395_57446093_57446172_57446528_57446578_57447937
transcript_9566.known	chr10	+	1014	2	FSM	ENSMUSG00000112242.2	ENSMUST00000217799.2	1014	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCTCCACCTTTGTCACA	NA	False	NA	NA	False	AATATA	-17	NA	116879650	116881006	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_116879701_116880042
transcript_95662.known	chr9	+	3001	4	FSM	ENSMUSG00000032305.16	ENSMUST00000093833.6	3001	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_3	8.73053390247253	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGAGCTGTACTGTGCTG	NA	False	NA	12	True	AATAAA	-12	NA	57444810	57450465	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_57445118_57445306_57445395_57446093_57446172_57447937
transcript_95664.known	chr9	+	341	2	FSM	ENSMUSG00000032305.16	ENSMUST00000215897.2	341	2	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCAAAGGCCCTATCCCTT	NA	False	NA	NA	False	NA	NA	NA	57444899	57445429	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_57445118_57445306
transcript_95665.known	chr9	+	645	5	FSM	ENSMUSG00000000088.8	ENSMUST00000000090.8	645	5	0	0	0	0	multi-exon	FALSE	canonical	3	7868	junction_4	746.021908190369	40640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTAGGTCTTGTGATGTTGT	377	False	NA	22	True	AATAAA	-22	NA	57428561	57439709	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_57428699_57436238_57436356_57437523_57437646_57438951_57439076_57439564
transcript_95666.known	chr9	+	1818	4	FSM	ENSMUSG00000000088.8	ENSMUST00000213678.2	1818	4	0	0	0	0	multi-exon	FALSE	canonical	3	7868	junction_3	735.670820106082	767	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTAGGTCTTGTGATGTTGT	372	False	NA	22	True	AATAAA	-22	NA	57428556	57439709	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_57428699_57436238_57437646_57438951_57439076_57439564
transcript_95673.known	chr9	-	1780	8	FSM	ENSMUSG00000032306.15	ENSMUST00000034856.15	1780	8	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_3	33.2393914333151	684	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGTCAGCCTTTGGTAT	8951	False	NA	-8	True	ATTAAA	-30	NA	57460046	57451538	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_57452222_57452477_57452687_57453676_57453851_57455810_57455994_57456319_57456462_57457855_57458057_57459429_57459558_57459986
transcript_95685.known	chr9	+	2340	9	FSM	ENSMUSG00000040188.11	ENSMUST00000045791.11	2340	9	0	0	0	0	multi-exon	TRUE	canonical	3	243	junction_4	15.3927742788621	294	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTGGCCCTGATGTCAAT	NA	False	NA	13	True	AATAAA	-15	NA	57468225	57496078	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_57468394_57484475_57484545_57484921_57485021_57486715_57486834_57488066_57488196_57488772_57488933_57490134_57490237_57494362_57494484_57494704
transcript_95686.known	chr9	+	2826	16	FSM	ENSMUSG00000032308.10	ENSMUST00000053230.7	2826	16	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	6.816320284598	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCATTTCTTCTTGCCTTGG	NA	False	NA	33	True	ATTAAA	-17	NA	57496734	57503516	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_57496970_57497606_57497748_57497943_57498065_57498496_57498602_57499276_57499421_57499613_57499697_57500101_57500258_57500444_57500551_57500740_57500782_57501033_57501137_57501264_57501330_57501416_57501496_57501566_57501608_57501889_57501938_57502065_57502133_57502225
transcript_95690.known	chr9	-	2749	13	FSM	ENSMUSG00000032312.8	ENSMUST00000034863.8	2749	13	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_12	11.433381924095	349	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCAGCCTCGGCGCTTCCTC	NA	False	NA	-25	True	AATAAA	-23	NA	57552936	57533928	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_57534787_57534999_57535087_57535160_57535357_57535459_57535534_57535935_57536027_57536103_57536204_57536283_57536350_57536542_57536637_57537450_57537671_57537962_57538076_57538177_57538292_57538649_57538727_57552277
transcript_95692.known	chr9	-	1940	7	FSM	ENSMUSG00000032310.5	ENSMUST00000034860.5	1940	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTGACTGGCTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	57590986	57584219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_57584806_57586269_57586357_57587129_57587254_57587532_57587623_57588276_57588395_57588984_57589821_57590887
transcript_95694.known	chr9	-	2496	13	FSM	ENSMUSG00000032316.9	ENSMUST00000065330.8	2496	13	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_10	47.1024297556813	545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCTGGTACCAGTGTGTC	9068	False	NA	-9	True	AATAAA	-21	NA	57673143	57657991	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57665909_57666007_57668106_57668324_57668998_57669151_57672356
transcript_95698.known	chr9	-	2363	12	FSM	ENSMUSG00000032316.9	ENSMUST00000215233.2	2363	12	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_9	49.1934955049954	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCCCTGGTACCAGTGTG	9814	False	NA	-11	True	AATAAA	-19	NA	57672397	57657993	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57665909_57666007_57668106_57668324_57668998_57669151_57672356
transcript_95701.nic	chr9	-	1715	12	NIC	ENSMUSG00000032316.9	novel	2496	13	NA	NA	13	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_9	91.1213884772205	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCTGGTACCAGTGTGTC	9752	False	NA	-9	True	AATAAA	-21	NA	57672459	57657991	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57668106_57668324_57668998_57669151_57672356
transcript_95716.nnic	chr9	+	2018	8	NNC	ENSMUSG00000038957.14	novel	5708	7	NA	NA	-2	-1240	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_7	86.0609655762609	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTTCCTAGAGTGAAGTG	NA	False	NA	16	True	AATAAA	-26	NA	57615820	57657446	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_57615983_57620663_57620845_57623230_57623551_57634468_57634805_57647172_57647327_57651867_57652086_57655443_57655716_57657071
transcript_95717.known	chr9	+	5708	7	FSM	ENSMUSG00000038957.14	ENSMUST00000043990.14	5708	7	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_3	27.6189347288333	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGACTCCAACTGATTCT	NA	False	NA	NA	False	GATAAA	-16	NA	57615822	57659782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_57615983_57620663_57620845_57623230_57623551_57634468_57634805_57647172_57647327_57651867_57652086_57655443
transcript_95722.known	chr9	+	4277	6	FSM	ENSMUSG00000038957.14	ENSMUST00000137245.8	4277	6	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	95.7613700820952	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTACAGTTGACAGGCCT	NA	False	NA	NA	False	NA	NA	NA	57615837	57658686	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_57615983_57620663_57620845_57634468_57634805_57647172_57647327_57651867_57652086_57655443
transcript_95727.known	chr9	-	1969	8	FSM	ENSMUSG00000004661.16	ENSMUST00000098686.4	1969	8	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_2	15.8603600340019	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTCTTTTTCTTTTTTTTT	NA	False	NA	NA	False	ATTAAA	-15	NA	57744076	57701969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_57702318_57703389_57703636_57703754_57704072_57705324_57705509_57717447_57717521_57717691_57717764_57740898_57741516_57743964
transcript_95734.nic	chr9	+	1488	12	NIC	ENSMUSG00000055720.11	novel	1364	11	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	84.997131696865	672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGTGTCCAGTGCTTG	NA	False	NA	16	True	AATATA	-17	NA	57818253	57837251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_57818343_57818999_57819109_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
transcript_95739.nnic	chr9	+	1435	12	NIC	ENSMUSG00000055720.11	novel	1319	11	NA	NA	-7	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	95.5400482857649	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGTGTCCAGTGCTTG	NA	False	NA	16	True	AATATA	-17	NA	57818254	57837251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_57818291_57818999_57819109_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
transcript_95748.known	chr9	+	1364	11	FSM	ENSMUSG00000055720.11	ENSMUST00000163329.2	1364	11	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	59.3140792729686	1051	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGTGTCCAGTGCTTG	NA	False	NA	16	True	AATATA	-17	NA	57818268	57837251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_57818343_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
transcript_95751.known	chr9	+	1426	11	FSM	ENSMUSG00000055720.11	ENSMUST00000216841.2	1426	11	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	88.2161549830869	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGCCGTGTCCAGTGCT	NA	False	NA	14	True	AATATA	-15	NA	57818316	57837249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_57818455_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
transcript_95757.known	chr9	+	1319	11	FSM	ENSMUSG00000055720.11	ENSMUST00000216925.2	1319	11	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	82.3315856764583	612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGTGTCCAGTGCTTG	NA	False	NA	16	True	AATATA	-17	NA	57818261	57837251	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_57818291_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
transcript_95759.known	chr9	+	2120	9	FSM	ENSMUSG00000032323.14	ENSMUST00000034874.14	2120	9	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_2	1.85404962177392	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGTTTGTATCTGTCAGAC	NA	False	NA	NA	False	AATAAA	-17	NA	57921953	57934306	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_57922582_57923556_57923713_57925476_57925677_57926575_57926780_57927991_57928150_57932360_57932528_57932810_57932890_57933367_57933566_57933976
transcript_9576.known	chr10	-	1959	16	FSM	ENSMUSG00000034024.9	ENSMUST00000047672.9	1959	16	0	0	0	0	multi-exon	FALSE	canonical	3	1936	junction_8	229.468312990414	8122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTCTTACTGATCTGT	NA	False	NA	-11	True	AATAAA	-19	NA	116899719	116886905	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
transcript_95761.known	chr9	+	2169	2	FSM	ENSMUSG00000097604.2	ENSMUST00000181289.2	2169	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAATGCCA	NA	False	NA	NA	False	NA	NA	NA	57905323	57914734	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_57905602_57912843
transcript_95769.known	chr9	-	4413	9	FSM	ENSMUSG00000036986.17	ENSMUST00000135310.8	4413	9	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	114.3314807916	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACCCTAACATTCTGATT	2204	False	NA	-11	True	AGTAAA	-13	NA	58157016	58125368	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_58127848_58128997_58129149_58136637_58136691_58137110_58137370_58137773_58137912_58140435_58140531_58141635_58142217_58154257_58154722_58156823
transcript_9577.known	chr10	-	864	7	FSM	ENSMUSG00000034024.9	ENSMUST00000219036.2	864	7	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_6	772.545575786093	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTGTATGCCGGAACGT	NA	False	NA	NA	False	AAGAAA	-40	NA	116899280	116896550	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899064
transcript_95771.known	chr9	-	4206	8	FSM	ENSMUSG00000036986.17	ENSMUST00000126690.8	4206	8	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	129.417848814747	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAACCCTAACATTCTGAT	2272	False	NA	-12	True	AGTAAA	-12	NA	58156948	58125369	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_58127848_58128997_58129149_58136637_58136691_58137110_58137370_58140435_58140531_58141635_58142217_58154257_58154722_58156823
transcript_95774.known	chr9	-	2652	8	FSM	ENSMUSG00000036986.17	ENSMUST00000153820.8	2652	8	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_3	51.5692520316326	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAAAAAAAAAAACCCA	2151	False	NA	5	True	NA	NA	NA	58157069	58128332	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_58129149_58136637_58136691_58137110_58137370_58137773_58137912_58140435_58140531_58141635_58142217_58154257_58154722_58156823
transcript_95777.known	chr9	-	452	2	FSM	ENSMUSG00000036986.17	ENSMUST00000124982.2	452	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCAGTGGTACCTCAAGC	2151	False	NA	NA	False	NA	NA	NA	58157069	58154395	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_58154722_58156943
transcript_95779.known	chr9	+	2236	8	FSM	ENSMUSG00000032333.7	ENSMUST00000216877.2	2236	8	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	134.059079269902	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGAAGTGCAGCTGGCTG	NA	False	NA	11	True	AATAAA	-22	NA	58160474	58169803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_58160683_58162216_58162324_58162816_58163097_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928
transcript_9578.known	chr10	-	6420	10	FSM	ENSMUSG00000020170.5	ENSMUST00000020381.5	6420	10	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	21.0226215606891	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACGTAAAGTTTTACTGTAT	NA	False	NA	-5	True	AATAAA	-28	NA	116984415	116905331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_116910785_116912715_116912880_116913416_116913576_116914664_116914852_116916926_116917019_116920936_116921029_116935847_116935873_116936530_116936574_116938017_116938104_116984296
transcript_95780.nic	chr9	+	1871	7	NIC	ENSMUSG00000032333.7	novel	1984	7	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	122.45498038962	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGAAGTGCAGCTGGCTG	NA	False	NA	11	True	AATAAA	-22	NA	58160437	58169803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_58160561_58162216_58162324_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928
transcript_95782.known	chr9	+	1984	7	FSM	ENSMUSG00000032333.7	ENSMUST00000034883.7	1984	7	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	85.7729561108861	457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGAAGTGCAGCTGGCTG	NA	False	NA	11	True	AATAAA	-22	NA	58160446	58169803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_58160683_58162216_58162324_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928
transcript_95786.known	chr9	-	3297	7	FSM	ENSMUSG00000032334.11	ENSMUST00000061799.10	3297	7	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_6	4.22952584681651	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGGCAAAGCTACTGTCA	9357	False	NA	NA	False	NA	NA	NA	58220469	58195020	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_58196201_58198037_58198154_58199851_58199948_58200855_58201013_58201641_58201780_58204903_58205013_58218968
transcript_95792.known	chr9	+	843	3	FSM	ENSMUSG00000097651.3	ENSMUST00000181967.3	843	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	1.5	406	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTGGCTGATACTTGCT	NA	False	NA	16	True	NA	NA	NA	58362404	58376918	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_58362640_58374083_58374201_58376427
transcript_95793.known	chr9	+	1601	2	FSM	ENSMUSG00000066607.6	ENSMUST00000216294.2	1601	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCCGGGGCCCACAGGCC	NA	False	NA	NA	False	AATAAA	-17	NA	58396890	58407063	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_58397676_58406247
transcript_9580.known	chr10	-	2145	6	FSM	ENSMUSG00000020170.5	ENSMUST00000219483.2	2145	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	43.0330105848987	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGAACAACACATAT	NA	False	NA	NA	False	NA	NA	NA	116984400	116918709	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_116920505_116920936_116921029_116935847_116935873_116936530_116936574_116938017_116938104_116984296
transcript_95800.known	chr9	+	841	8	FSM	ENSMUSG00000032336.18	ENSMUST00000176896.8	841	8	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	128.573492046933	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAGCATGCCTTATTTAG	51	False	NA	NA	False	NA	NA	NA	58489723	58559245	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_58489810_58530969_58531139_58535116_58535212_58547951_58548086_58550811_58550968_58557779_58557802_58558540_58558616_58559141
transcript_95803.known	chr9	+	1898	8	FSM	ENSMUSG00000032336.18	ENSMUST00000176557.8	1898	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	135.42570822772	779	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTGGAATAATACTCTTTA	16	False	NA	NA	False	AATAAA	-16	NA	58489688	58560161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_58489810_58530969_58531139_58535116_58535212_58547951_58548086_58550811_58551086_58557791_58557802_58558540_58558616_58559141
transcript_95820.known	chr9	-	883	6	FSM	ENSMUSG00000074269.11	ENSMUST00000098674.6	883	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	244.73054570282	3352	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAACAGGTGAATCCACT	9050	False	NA	17	True	AATAAA	-40	NA	58648842	58560138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_58560390_58565039_58565127_58567456_58567655_58573115_58573200_58619298_58619389_58648669
transcript_9584.known	chr10	-	1327	7	FSM	ENSMUSG00000020171.9	ENSMUST00000020382.8	1327	7	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_4	39.2074256005444	1182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTGTCTGCCTCTTGTG	3371	False	NA	-14	True	AATAAA	-14	NA	117060412	117051126	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_117051742_117053116_117053205_117053333_117053427_117056237_117056333_117056436_117056504_117058078_117058199_117060163
transcript_95846.known	chr9	-	534	1	FSM	ENSMUSG00000066592.4	ENSMUST00000085631.4	534	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	223	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACTTTATCCAAAAAGCC	NA	False	NA	NA	False	NA	NA	NA	59053493	59052959	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_59053000_59053500
transcript_95847.known	chr9	-	2518	16	FSM	ENSMUSG00000025235.9	ENSMUST00000026265.8	2518	16	0	0	0	0	multi-exon	TRUE	canonical	3	108	junction_2	13.5581054068119	206	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGATCACTGTCTGTCTT	NA	False	NA	-18	True	AATAAA	-2	NA	59260791	59229272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_59230266_59230670_59230873_59231319_59231462_59232072_59232143_59234469_59234642_59234738_59234892_59235862_59235932_59237700_59237756_59240762_59240891_59243646_59243701_59247093_59247167_59248369_59248482_59249770_59249835_59251342_59251423_59253082_59253135_59260692
transcript_95851.known	chr9	+	2484	7	FSM	ENSMUSG00000025236.12	ENSMUST00000217570.2	2484	7	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_6	121.65205391699	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTAAGTCTAATTGATTT	NA	False	NA	18	True	ATTAAA	-19	NA	59198840	59223482	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_59199150_59204808_59205035_59210771_59210835_59217510_59217632_59220322_59220520_59221035_59221135_59222013
transcript_95852.known	chr9	+	2464	7	FSM	ENSMUSG00000025236.12	ENSMUST00000026266.9	2464	7	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_6	118.522032644662	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGATCCTAAGTCTAATTGA	NA	False	NA	15	True	ATTAAA	-16	NA	59198854	59223479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_59199150_59204808_59205035_59210771_59210835_59217510_59217632_59220322_59220520_59221035_59221135_59222016
transcript_95853.known	chr9	-	6971	14	FSM	ENSMUSG00000025234.12	ENSMUST00000171975.8	6971	14	0	0	0	0	multi-exon	TRUE	canonical	3	295	junction_6	43.7741649239926	201	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACATTGTTAAACTGTGAC	NA	False	NA	NA	False	AATAAA	-17	NA	59393897	59295540	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_59300662_59302160_59302274_59303633_59303895_59310650_59310709_59313007_59313139_59315158_59315231_59315657_59315701_59319707_59319815_59322052_59322120_59333405_59333462_59333896_59333990_59344053_59344199_59361684_59361753_59393261
transcript_95857.known	chr9	-	475	1	FSM	ENSMUSG00000090516.2	ENSMUST00000171632.2	475	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	571	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGACTCTGGCCAATGCCC	NA	False	NA	NA	False	NA	NA	NA	59379516	59379041	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_59379000_59379500
transcript_9586.known	chr10	-	1339	7	FSM	ENSMUSG00000020171.9	ENSMUST00000218887.2	1339	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	133.681212841097	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTCTGCCTCTTGTGA	3388	False	NA	-13	True	AATAAA	-15	NA	117060395	117051125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_117051742_117053116_117053205_117053333_117053427_117056237_117056361_117056436_117056504_117058078_117058199_117060163
transcript_95860.known	chr9	-	1126	4	FSM	ENSMUSG00000049526.9	ENSMUST00000214580.2	1126	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAATTCAGAGGAAATATAT	NA	False	NA	NA	False	AATAAA	-14	NA	59447130	59425968	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_59426558_59426901_59427034_59427371_59427522_59446875
transcript_95861.known	chr9	+	1996	14	FSM	ENSMUSG00000025232.9	ENSMUST00000026262.8	1996	14	0	0	0	0	multi-exon	FALSE	canonical	3	1100	junction_8	84.5408762866438	3051	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTTGGGTTGCTTGTGT	NA	False	NA	32	True	AATAAA	-24	NA	59446822	59472392	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_59447260_59461415_59461509_59462621_59462688_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468361_59469225_59469310_59469578_59469652_59470149_59470334_59470506_59470598_59471165_59471271_59472103
transcript_95862.known	chr9	+	2484	23	FSM	ENSMUSG00000025237.17	ENSMUST00000216351.2	2484	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	14.9016056597828	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTGCTGTGGACTGGATA	NA	False	NA	11	True	AATAAA	-5	NA	59524643	59557550	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_59524692_59525750_59525991_59529631_59529827_59530405_59530484_59531200_59531296_59531655_59531717_59531946_59532038_59532605_59532673_59535801_59535952_59537901_59538053_59538622_59538677_59540198_59540295_59540794_59540888_59542138_59542265_59543952_59544019_59544916_59544985_59547046_59547096_59547322_59547433_59548306_59548380_59556112_59556193_59556572_59556637_59556801_59556887_59557206
transcript_95892.known	chr9	+	2432	11	FSM	ENSMUSG00000032294.18	ENSMUST00000034834.16	2432	11	0	0	0	0	multi-exon	FALSE	canonical	3	15664	junction_5	1339.70741581884	40930	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTTTGTTTTGTTTT	1664	False	NA	20	True	AATAAA	-20	NA	59563650	59586658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586010
transcript_95893.known	chr9	+	2113	8	FSM	ENSMUSG00000032294.18	ENSMUST00000214571.2	2113	8	0	0	0	0	multi-exon	FALSE	canonical	3	15664	junction_5	1465.84232245004	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACTGAAAGAAAAAAAAGC	1872	False	NA	NA	False	NA	NA	NA	59563858	59580242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203
transcript_95898.known	chr9	+	1368	11	FSM	ENSMUSG00000074259.11	ENSMUST00000098661.10	1368	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_7	5.61159513863928	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGAATGTTAGACTGTT	NA	False	NA	NA	False	NA	NA	NA	59615046	59623707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_59615379_59616734_59616793_59617144_59617221_59617784_59617889_59618448_59618548_59618827_59618900_59619366_59619430_59621078_59621224_59621459_59621557_59623205_59623311_59623490
transcript_95900.known	chr9	-	392	4	FSM	ENSMUSG00000051705.14	ENSMUST00000216045.2	392	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	7.76029781788188	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACCCTGTGGTCTTGAGT	6357	False	NA	NA	False	AATACA	-4	NA	59657993	59645114	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_59645152_59647222_59647335_59657544_59657655_59657860
transcript_95901.known	chr9	-	764	3	FSM	ENSMUSG00000051705.14	ENSMUST00000213257.2	764	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	9	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCCGACATACATCACAAAG	6445	False	NA	NA	False	NA	NA	NA	59657905	59644544	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_59645152_59647222_59647335_59657860
transcript_95902.known	chr9	-	1559	3	FSM	ENSMUSG00000051705.14	ENSMUST00000216329.2	1559	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	2	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGCGGGTGTGTGGTGCA	6440	False	NA	-22	True	AATAAA	-15	NA	59657910	59643752	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_59645152_59657544_59657655_59657860
transcript_95903.known	chr9	-	3682	2	FSM	ENSMUSG00000051705.14	ENSMUST00000051039.5	3682	2	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	0	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGTCTCTGTCTCCTCA	6418	False	NA	-4	True	AATAAA	-18	NA	59657932	59641541	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_59645152_59657860
transcript_95916.known	chr9	-	2037	8	FSM	ENSMUSG00000032292.9	ENSMUST00000034831.3	2037	8	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_6	3.8438925848782	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCAGGCTCTCTGTTGAGA	NA	False	NA	55	True	NA	NA	NA	59857400	59850053	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_59850803_59854244_59854351_59854595_59854837_59855645_59855804_59855885_59856108_59856207_59856312_59856464_59856592_59857070
transcript_95923.known	chr9	-	2779	16	FSM	ENSMUSG00000047766.16	ENSMUST00000114034.9	2779	16	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_10	6.23965811029205	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGTTTGTTGTATGGTT	3535	False	NA	NA	False	AATAAA	-21	NA	60595401	60494511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_60495175_60500888_60501043_60505368_60505479_60508585_60508772_60509861_60510100_60517540_60517705_60522376_60522461_60528851_60529000_60556762_60556825_60573571_60573716_60578577_60578645_60584362_60584567_60587351_60587455_60592317_60592406_60594421_60594479_60595094
transcript_95928.known	chr9	+	2440	3	FSM	ENSMUSG00000034839.6	ENSMUST00000038407.6	2440	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGGGATTCTAGGTGTGT	NA	False	NA	NA	False	NA	NA	NA	60620271	60646084	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_60620689_60631429_60631641_60644272
transcript_95929.known	chr9	+	4417	19	FSM	ENSMUSG00000034485.11	ENSMUST00000214354.2	4417	19	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_11	29.0464187886294	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGAATTTTACTTTTCTGA	NA	False	NA	17	True	AATAAA	-18	NA	60701823	60787641	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_60701975_60748121_60748256_60753274_60753364_60755903_60755969_60756726_60756785_60757411_60757483_60757582_60757690_60761597_60761780_60763479_60763518_60766421_60766500_60768333_60768442_60770672_60770706_60770881_60770981_60773646_60773684_60774713_60774767_60776856_60779566_60781314_60781468_60783643_60783710_60787455
transcript_9593.known	chr10	+	364	1	FSM	ENSMUSG00000112462.2	ENSMUST00000218027.2	364	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTAAGAGGGTCATGTTC	NA	False	NA	NA	False	NA	NA	NA	117060493	117060857	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_117060500_117060900
transcript_95930.known	chr9	+	4428	19	FSM	ENSMUSG00000034485.11	ENSMUST00000050183.7	4428	19	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_8	35.7857134056402	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTGAGATGAGTGTGT	NA	False	NA	28	True	AATAAA	-29	NA	60701829	60787652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_60701975_60748121_60748256_60753274_60753364_60755903_60755969_60756726_60756785_60757411_60757483_60757582_60757690_60761597_60761786_60763479_60763518_60766421_60766500_60768333_60768442_60770672_60770706_60770881_60770981_60773646_60773684_60774713_60774767_60776856_60779566_60781314_60781468_60783643_60783710_60787455
transcript_95932.nnic	chr9	+	1037	3	NNC	ENSMUSG00000111147.2	novel	3468	7	NA	NA	20134	208	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	2	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTCATTTTTATCTTATG	NA	False	NA	NA	False	NA	NA	NA	60959627	60966606	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_60959709_60960349_60960452_60965752
transcript_95933.nnic	chr9	+	312	2	NNC	ENSMUSG00000111147.2	novel	3468	7	NA	NA	20109	-6162	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTGTTGCTTAATGAGCC	NA	False	NA	NA	False	NA	NA	NA	60959602	60960236	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_60959709_60960030
transcript_95934.nnic	chr9	+	449	2	NNC	ENSMUSG00000111147.2	novel	3468	7	NA	NA	20109	-6025	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTAAGGAGGATTTATTTTG	NA	False	NA	NA	False	NA	NA	NA	60959602	60960373	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_60959709_60960030
transcript_9594.known	chr10	-	2227	11	FSM	ENSMUSG00000055531.13	ENSMUST00000176670.8	2227	11	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_6	215.998518513438	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGATGTGTAAAGCTGTTCA	4515	False	NA	-12	True	AATAAA	-13	NA	117212834	117184946	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_117185373_117191839_117192030_117194897_117195052_117196344_117196461_117196760_117197266_117197678_117197790_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
transcript_95941.nnic	chr9	-	446	3	NNC	ENSMUSG00000111658.2	novel	2678	5	NA	NA	127	-21442	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2.5	16	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCTCGGGAGGAAAGAGTT	NA	False	NA	NA	False	NA	NA	NA	61200964	61187950	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_61188199_61193220_61193295_61200840
transcript_95945.known	chr9	-	499	3	FSM	ENSMUSG00000007892.9	ENSMUST00000008036.9	499	3	0	0	0	0	multi-exon	FALSE	canonical	3	11557	junction_2	345.5	293669	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGGACTGGTCTCACTTG	NA	False	NA	-28	True	AATAAA	-14	NA	61821824	61820565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_61820804_61821169_61821245_61821638
transcript_95963.known	chr9	-	3398	23	FSM	ENSMUSG00000032254.11	ENSMUST00000034815.9	3398	23	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_5	42.1913194628531	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTGTGTGGTGGCCATT	NA	False	NA	-3	True	AATAAA	-18	NA	61854056	61824561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831186_61831499_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
transcript_95965.nic	chr9	-	3115	22	NIC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	131	junction_5	37.7146464629211	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTGTGTGGTGGCCATT	NA	False	NA	-3	True	AATAAA	-18	NA	61854085	61824561	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
transcript_95968.known	chr9	-	1829	16	FSM	ENSMUSG00000032254.11	ENSMUST00000214295.2	1829	16	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_9	74.9241394122526	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGATCTCGGGACAGAAAT	NA	False	NA	NA	False	AATAAA	-39	NA	61854042	61832878	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61840510_61840553_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
transcript_95969.known	chr9	-	3566	8	FSM	ENSMUSG00000032278.12	ENSMUST00000034817.11	3566	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	2.96922995583236	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGGGAGTTCAGGAATGC	NA	False	NA	NA	False	ATTAAA	-21	NA	61934138	61861019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_61863570_61868810_61868953_61871009_61871107_61876062_61876190_61879907_61880114_61883353_61883482_61896274_61896421_61933968
transcript_95972.known	chr9	-	3307	5	FSM	ENSMUSG00000032278.12	ENSMUST00000135050.2	3307	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	3.53553390593274	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAGGTTTCATTATTTT	NA	False	NA	NA	False	NA	NA	NA	61934083	61860762	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_61863570_61868810_61868953_61871009_61871107_61896274_61896421_61933968
transcript_95973.known	chr9	-	4850	5	FSM	ENSMUSG00000032252.15	ENSMUST00000185675.7	4850	5	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_3	11.5974135047432	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACTTGGATATTTCTCTT	NA	False	NA	NA	False	AATAAA	-21	NA	62029892	61964529	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_61968318_61975666_61975913_61977296_61977896_61995710_61995802_62029766
transcript_95975.known	chr9	-	1922	3	FSM	ENSMUSG00000032252.15	ENSMUST00000185510.2	1922	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	70	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGACATATGGTGTCTGTT	NA	False	NA	NA	False	AATAAA	-14	NA	62029891	61987601	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_61989308_61995710_61995802_62029766
transcript_95976.known	chr9	-	3042	2	FSM	ENSMUSG00000046846.5	ENSMUST00000056949.5	3042	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGGACTCAGAGTTCTC	NA	False	NA	NA	False	NA	NA	NA	62189490	62178010	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_62180846_62189283
transcript_95979.known	chr9	+	835	7	FSM	ENSMUSG00000032249.15	ENSMUST00000138226.8	835	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	200.326954973336	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTTTTTTCTGATTGTA	NA	False	NA	NA	False	NA	NA	NA	62248574	62284983	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_62248634_62279001_62279152_62279343_62279467_62280766_62280960_62281935_62282034_62284581_62284646_62284835
transcript_95982.known	chr9	+	924	7	FSM	ENSMUSG00000032249.15	ENSMUST00000135395.8	924	7	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	197.739517210563	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCCCTCCTATTCCTGC	NA	False	NA	NA	False	NA	NA	NA	62249356	62284954	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_62249534_62279001_62279152_62279343_62279467_62280766_62280960_62281935_62282034_62284581_62284646_62284835
transcript_9599.known	chr10	-	2200	10	FSM	ENSMUSG00000055531.13	ENSMUST00000176686.8	2200	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	212.334001975806	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTAAAGCTGTTCACGT	4471	False	NA	-9	True	AATAAA	-16	NA	117212878	117184943	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_117185407_117191839_117192033_117194897_117195052_117196344_117196461_117196760_117197266_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
transcript_95992.known	chr9	+	640	5	FSM	ENSMUSG00000032249.15	ENSMUST00000128636.8	640	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	236.291133985175	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGAGGAAGAGGATGTGAG	NA	False	NA	34	True	NA	NA	NA	62249183	62282000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_62249293_62279001_62279152_62279343_62279467_62280766_62280960_62281935
transcript_95997.known	chr9	+	2113	7	FSM	ENSMUSG00000032249.15	ENSMUST00000085519.13	2113	7	0	0	0	0	multi-exon	FALSE	canonical	3	492	junction_5	26.6546848081575	3424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGCTTCCTTTGAGTCTT	NA	False	NA	25	True	AATAAA	-25	NA	62248610	62286094	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_62248837_62279001_62279152_62279343_62279467_62280766_62280960_62281935_62282034_62284581_62284646_62284835
transcript_95998.known	chr9	+	629	4	FSM	ENSMUSG00000032249.15	ENSMUST00000145679.2	629	4	0	0	0	0	multi-exon	FALSE	canonical	3	492	junction_2	27.7648858972784	1202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGGGAGGGGAGGAATAAAA	NA	False	NA	-29	True	NA	NA	NA	62280720	62285063	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_62280960_62281935_62282034_62284581_62284646_62284835
transcript_95999.known	chr9	+	617	5	FSM	ENSMUSG00000032249.15	ENSMUST00000126451.8	617	5	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	236.291133985175	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGGGAGGAAGAGGATGT	NA	False	NA	31	True	NA	NA	NA	62252080	62281997	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_62252170_62279001_62279152_62279343_62279467_62280766_62280960_62281935
transcript_96001.known	chr9	+	2142	7	FSM	ENSMUSG00000032245.13	ENSMUST00000034776.13	2142	7	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	5.87130498460285	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCCGTGGCTGTTTCTAG	NA	False	NA	13	True	AATAAA	-21	NA	62746066	62759288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_62746237_62751851_62751967_62753235_62753335_62754247_62754437_62754866_62754923_62756390_62756514_62757898
transcript_96002.known	chr9	+	864	5	FSM	ENSMUSG00000032246.15	ENSMUST00000034777.14	864	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	39.344631145812	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGAATTGGTGTTTCCCT	NA	False	NA	9	True	AATAAA	-21	NA	62765385	62783203	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_62765444_62765523_62765555_62775958_62776100_62778547_62778737_62782758
transcript_96003.known	chr9	+	394	4	FSM	ENSMUSG00000032246.15	ENSMUST00000214633.2	394	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	3.55902608401044	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTTCGGGGCCTGAAAAC	NA	False	NA	NA	False	NA	NA	NA	62765413	62782884	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_62765444_62765523_62765555_62778547_62778737_62782740
transcript_96006.nic	chr9	+	905	3	ISM	ENSMUSG00000032246.15	ENSMUST00000034777.14	864	5	10437	6	10407	0	3prime_fragment	FALSE	canonical	3	41	junction_1	28	414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCATGTGGAATTGGTGT	2888	False	NA	3	True	AATAAA	-15	NA	62775822	62783197	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_62776100_62778547_62778737_62782758
transcript_96007.nic	chr9	-	3542	14	NIC	ENSMUSG00000032405.11	novel	5564	14	NA	NA	-19	-928	combination_of_known_junctions	FALSE	canonical	3	43	junction_1	23.8180976391468	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTTTGTCCCGTTGTTGT	NA	False	NA	NA	False	ATTAAA	-16	NA	62888184	62786696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_62788546_62792053_62792092_62794589_62794733_62799407_62799589_62800410_62800542_62803112_62803274_62810040_62810115_62820031_62820138_62826632_62826768_62827739_62827831_62830562_62830611_62830852_62830938_62859037_62859483_62888129
transcript_9601.known	chr10	-	6526	10	FSM	ENSMUSG00000055531.13	ENSMUST00000069168.13	6526	10	0	0	0	0	multi-exon	FALSE	canonical	3	507	junction_5	44.0656076524286	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATACTTTGCAGTTTGTT	4474	False	NA	-12	True	AATAAA	-13	NA	117212875	117180577	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_117185373_117191839_117192030_117194897_117195052_117196344_117196461_117196760_117197266_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
transcript_96011.known	chr9	-	5564	14	FSM	ENSMUSG00000032405.11	ENSMUST00000098651.6	5564	14	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	15.6049605221996	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTGTGTTCTGTAAAATG	NA	False	NA	0	True	AATAAA	-17	NA	62888161	62785649	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_62789544_62792053_62792092_62794589_62794733_62799407_62799589_62800410_62800542_62803112_62803274_62810040_62810115_62820031_62820138_62826632_62826768_62827739_62827831_62830562_62830611_62830852_62830938_62859037_62859483_62888129
transcript_96013.nnic	chr9	-	863	6	NNC	ENSMUSG00000032405.11	novel	739	5	NA	NA	-19	620	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	46.8529614859082	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTATAAACTCACTCTGAT	NA	False	NA	NA	False	NA	NA	NA	62888184	62827118	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_62827258_62827739_62827831_62830562_62830611_62830852_62830938_62859037_62859483_62888129
transcript_96014.known	chr9	-	2310	22	FSM	ENSMUSG00000058444.9	ENSMUST00000034920.11	2310	22	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_19	9.60607328677695	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCGTTTGTCTCAGCAAGT	NA	False	NA	-1	True	AATAAA	-18	NA	63285184	63071049	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_63071473_63101483_63101530_63104592_63104655_63124274_63124308_63124620_63124648_63142570_63142601_63164258_63164331_63169425_63169477_63170395_63170470_63188300_63188350_63193680_63193743_63200805_63200888_63200977_63201047_63210402_63210443_63229484_63229550_63237189_63237239_63245366_63245435_63246362_63246404_63250668_63250739_63265274_63265343_63279018_63279068_63284404
transcript_96023.known	chr9	-	1150	5	FSM	ENSMUSG00000058444.9	ENSMUST00000216999.2	1150	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	28.3372546306095	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATATTCATTTTATTTTCT	NA	False	NA	NA	False	AATAAA	-13	NA	63285159	63247507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_63247716_63250668_63250739_63265274_63265343_63279018_63279068_63284404
transcript_96025.known	chr9	-	1294	11	FSM	ENSMUSG00000058444.9	ENSMUST00000213604.2	1294	11	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	6.5299310869258	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	63210425	63123552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_63124308_63124620_63124648_63142570_63142601_63164258_63164331_63169425_63169477_63170395_63170470_63188300_63188350_63193680_63193743_63200805_63200888_63200977_63201047_63210402
transcript_96026.known	chr9	-	1771	1	FSM	ENSMUSG00000032403.9	ENSMUST00000185528.2	1771	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAGAAGAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	63306528	63304757	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_63304800_63306500
transcript_96029.known	chr9	+	5294	10	FSM	ENSMUSG00000037257.9	ENSMUST00000041551.9	5294	10	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_6	53.7134601610168	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAGTGGAGACATGAAAAT	9214	False	NA	NA	False	AATAAA	-17	NA	63509941	63551870	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_63510054_63523967_63524159_63524269_63524367_63524789_63524880_63526429_63526514_63542586_63542670_63543665_63543766_63546321_63546427_63546874_63546925_63547488
transcript_96034.nic	chr9	+	1380	7	ISM	ENSMUSG00000037257.9	ENSMUST00000041551.9	5294	10	-19	7501	-19	-3241	5prime_fragment	FALSE	canonical	3	211	junction_6	65.4032364132948	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTTTTCTTGTAAACCGG	9195	False	NA	NA	False	NA	NA	NA	63509922	63544369	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_63510054_63523967_63524159_63524269_63524367_63524789_63524880_63526429_63526514_63542586_63542670_63543665
transcript_96036.nnic	chr9	+	751	6	NNC	ENSMUSG00000037257.9	novel	5294	10	NA	NA	-19	-7119	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	153.651033188846	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGCGCCTCTGACTTCC	9195	False	NA	NA	False	AATAAA	-32	NA	63509922	63540491	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_63510054_63523967_63524159_63524269_63524367_63524789_63524880_63526429_63526514_63540333
transcript_96039.nnic	chr9	-	1077	2	NNC	ENSMUSG00000036867.8	novel	2971	4	NA	NA	40883	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTTTTCTTTCTTACAAA	NA	False	NA	NA	False	AATAAA	-15	NA	63883386	63860357	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_63861339_63883290
transcript_96040.nnic	chr9	-	953	2	NNC	ENSMUSG00000036867.8	novel	2971	4	NA	NA	40883	-124	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAAGCCTAGGTTTGGTG	NA	False	NA	44	True	NA	NA	NA	63883386	63860481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_63861339_63883290
transcript_96041.nnic	chr9	-	789	2	NNC	ENSMUSG00000036867.8	novel	2971	4	NA	NA	40883	-288	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGGAGTCATTTTTACAA	NA	False	NA	-120	True	NA	NA	NA	63883386	63860645	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_63861339_63883290
transcript_96042.known	chr9	-	2971	4	FSM	ENSMUSG00000036867.8	ENSMUST00000041029.6	2971	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_3	8.65383665716478	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTTTTCTTTCTTACAAA	NA	False	NA	NA	False	AATAAA	-15	NA	63929341	63860357	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_63861339_63914812_63914891_63919496_63919554_63927486
transcript_96057.known	chr9	-	2957	19	FSM	ENSMUSG00000032400.19	ENSMUST00000122091.8	2957	19	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_16	368.954800838434	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGCCTGGTTTAATCTT	NA	False	NA	0	True	ACTAAA	-20	NA	64080386	64044425	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_64045342_64047172_64047299_64051361_64051475_64054106_64054203_64054551_64054689_64056680_64056710_64057437_64057595_64060166_64060247_64060832_64060933_64062445_64062502_64063294_64063389_64065976_64066049_64068102_64068259_64068652_64068724_64069845_64070046_64071628_64071748_64072644_64072741_64075894_64075947_64080099
transcript_96058.known	chr9	-	609	3	FSM	ENSMUSG00000032400.19	ENSMUST00000176848.2	609	3	0	0	0	0	multi-exon	FALSE	canonical	3	1088	junction_1	67	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGTAAAAGTGAACCAGTAA	NA	False	NA	-59	True	NA	NA	NA	64051496	64044993	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_64045342_64047172_64047299_64051361
transcript_9608.known	chr10	-	3819	9	FSM	ENSMUSG00000055531.13	ENSMUST00000177145.8	3819	9	0	0	0	0	multi-exon	FALSE	canonical	3	507	junction_4	46.3355627461241	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAGTAAGTGTCAGTCT	4516	False	NA	NA	False	AATAAA	-22	NA	117212833	117189709	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_117192030_117194897_117195052_117196344_117196461_117196760_117197266_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
transcript_96097.known	chr9	+	99	1	FSM	ENSMUSG00000119765.1	ENSMUST00000083425.3	99	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTCAAAACTTTAACTGAGA	NA	False	NA	NA	False	NA	NA	NA	64083942	64084041	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_64083900_64084000
transcript_96098.known	chr9	+	1538	10	FSM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	0	0	0	0	multi-exon	FALSE	canonical	3	16882	junction_3	1427.06559842995	93040	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTGCTTTGTTCCACATG	NA	False	NA	16	True	AATAAA	-13	NA	64080656	64085948	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
transcript_96099.known	chr9	+	856	4	FSM	ENSMUSG00000032399.9	ENSMUST00000217055.2	856	4	0	0	0	0	multi-exon	FALSE	canonical	3	17440	junction_1	1472.4913883921	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATCAAAAAGGTAAGCTCA	NA	False	NA	NA	False	AAGAAA	-17	NA	64080674	64083487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_64080716_64082105_64082278_64082475_64083005_64083373
transcript_96105.known	chr9	+	1228	3	FSM	ENSMUSG00000032398.8	ENSMUST00000034965.8	1228	3	0	0	0	0	multi-exon	FALSE	canonical	3	413	junction_2	26	3092	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAACTGCCAGCAACCTCT	1628	False	NA	NA	False	NA	NA	NA	64086555	64090414	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_64086703_64087780_64087871_64089423
transcript_96108.known	chr9	-	2436	11	FSM	ENSMUSG00000004936.9	ENSMUST00000005066.9	2436	11	0	0	0	0	multi-exon	TRUE	canonical	3	469	junction_6	51.6454257412987	669	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTTTGTGGCACACCTT	NA	False	NA	-13	True	AATAAA	-38	NA	64160913	64093051	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_64094081_64094572_64094619_64094958_64095021_64098548_64098614_64098734_64098937_64100983_64101109_64111712_64111765_64112392_64112471_64119865_64120013_64121680_64121892_64160494
transcript_96127.known	chr9	+	1211	8	FSM	ENSMUSG00000032397.8	ENSMUST00000034964.7	1211	8	0	0	0	0	multi-exon	FALSE	canonical	3	540	junction_1	675.401679425976	8221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTCAGGATTTGAGTTT	9569	False	NA	14	True	AATAAA	-14	NA	64188888	64212074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_64188935_64195389_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
transcript_96128.known	chr9	+	1841	8	FSM	ENSMUSG00000032397.8	ENSMUST00000216594.2	1841	8	0	0	0	0	multi-exon	FALSE	canonical	3	410	junction_1	719.77354715471	1791	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATAAAGTTGAGGCTG	9565	False	NA	NA	False	NA	NA	NA	64188884	64212706	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_64188935_64195395_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
transcript_96129.known	chr9	+	352	4	FSM	ENSMUSG00000032397.8	ENSMUST00000215031.2	352	4	0	0	0	0	multi-exon	FALSE	canonical	3	673	junction_1	825.976728216695	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGAAATGCTTGATTGAT	9543	False	NA	NA	False	NA	NA	NA	64188862	64197731	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_64188930_64195389_64195526_64196991_64197065_64197655
transcript_96130.known	chr9	+	353	4	FSM	ENSMUSG00000032397.8	ENSMUST00000213289.2	353	4	0	0	0	0	multi-exon	FALSE	canonical	3	540	junction_1	888.302250863347	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGAAATGCTTGATTGAT	9547	False	NA	NA	False	NA	NA	NA	64188866	64197731	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_64188935_64195389_64195526_64196991_64197065_64197655
transcript_96131.known	chr9	+	400	5	FSM	ENSMUSG00000032397.8	ENSMUST00000213165.2	400	5	0	0	0	0	multi-exon	FALSE	canonical	3	479	junction_1	838.218646893518	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCAAGCTGCAATTTGAAG	9545	False	NA	NA	False	NA	NA	NA	64188864	64201347	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_64188930_64195395_64195526_64196991_64197065_64197655_64197732_64201291
transcript_96132.known	chr9	-	3605	17	FSM	ENSMUSG00000032396.18	ENSMUST00000068367.14	3605	17	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_16	6.60699203495812	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTGGCTCAAATTGATTC	5056	False	NA	NA	False	NA	NA	NA	64248570	64214038	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_64214631_64214711_64214887_64215561_64215708_64217448_64217628_64217723_64217879_64218727_64219262_64221215_64221309_64221834_64222083_64224969_64225132_64226364_64226535_64229683_64229864_64231903_64231983_64232989_64233167_64236714_64236851_64238068_64238198_64246760_64246915_64248274
transcript_96134.known	chr9	-	508	4	FSM	ENSMUSG00000004771.13	ENSMUST00000171100.2	508	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	456.48244459368	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCCGCCCACCACTGAGAA	NA	False	NA	NA	False	NA	NA	NA	64645012	64624184	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_64624271_64632783_64632865_64633905_64634100_64644865
transcript_96136.known	chr9	-	726	3	FSM	ENSMUSG00000004771.13	ENSMUST00000167569.8	726	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	492.5	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTTAGAAATAAGCTATTG	NA	False	NA	98	True	NA	NA	NA	64645024	64623784	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_64624271_64632783_64632865_64644865
transcript_96139.known	chr9	-	2336	5	FSM	ENSMUSG00000004771.13	ENSMUST00000172298.8	2336	5	0	0	0	0	multi-exon	TRUE	canonical	3	899	junction_3	39.0160223497988	1284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGGTGAGATTACATTCT	NA	False	NA	-2	True	AATAAA	-21	NA	64645040	64622580	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_64624271_64632783_64632865_64633905_64634100_64635515_64635712_64644865
transcript_96145.known	chr9	+	2820	13	FSM	ENSMUSG00000034263.14	ENSMUST00000170517.9	2820	13	0	0	0	0	multi-exon	TRUE	canonical	3	115	junction_1	33.6860505254029	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATTAGGATTTTGACTGT	NA	False	NA	NA	False	ATTAAA	-17	NA	64868186	64894260	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_64868221_64868975_64869281_64871607_64871886_64873971_64874080_64879254_64879411_64879973_64880093_64880499_64880643_64882898_64882992_64885418_64885564_64887056_64887191_64889270_64889390_64891259_64891326_64893140
transcript_96146.known	chr9	+	2837	13	FSM	ENSMUSG00000034263.14	ENSMUST00000037504.7	2837	13	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	58.8451357377991	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGACTCCTAAGAAGCAAT	NA	False	NA	NA	False	AATATA	-18	NA	64868218	64893990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_64868540_64868975_64869281_64871607_64871886_64873971_64874080_64879254_64879411_64879973_64880093_64880499_64880643_64882898_64882992_64885418_64885564_64887056_64887191_64889270_64889390_64891259_64891326_64893140
transcript_96148.known	chr9	-	2709	11	FSM	ENSMUSG00000033629.7	ENSMUST00000036615.7	2709	11	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_1	24.7620677650313	231	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTTGTGCTTAAACATCA	NA	False	NA	-1	True	ATTAAA	-23	NA	64928975	64894264	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_64895812_64897598_64897731_64898255_64898363_64899538_64899652_64905476_64905605_64908262_64908374_64911538_64911591_64912889_64913055_64913842_64913917_64917755_64917799_64928738
transcript_96150.known	chr9	+	4808	21	FSM	ENSMUSG00000032393.16	ENSMUST00000034960.14	4808	21	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_17	12.9379287368574	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGTATTTCCCCCATGAC	NA	False	NA	31	True	ATTAAA	-28	NA	64939695	64989933	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_64939906_64942156_64942294_64944250_64944524_64949545_64949659_64950967_64951142_64952901_64953071_64958671_64958783_64960326_64960456_64961050_64961113_64961700_64961802_64962109_64962288_64963073_64963234_64967484_64967565_64970708_64970862_64971100_64971237_64973632_64973779_64981720_64981868_64983017_64983171_64985244_64985388_64985955_64986068_64988012
transcript_96154.known	chr9	+	2482	7	FSM	ENSMUSG00000032392.12	ENSMUST00000069000.9	2482	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	17.0269394392142	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCAAGTTGTCTGTGACTG	NA	False	NA	NA	False	AATAAA	-15	NA	65121971	65146500	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_65122146_65122630_65122915_65133334_65133473_65137087_65137295_65140950_65141123_65143922_65144065_65145135
transcript_96158.known	chr9	+	2518	6	FSM	ENSMUSG00000032392.12	ENSMUST00000213396.2	2518	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_2	11.7915223783869	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTGTGACTGTCTGCA	NA	False	NA	NA	False	AATAAA	-21	NA	65122426	65146506	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_65122915_65133334_65133473_65137087_65137295_65140950_65141123_65143922_65144065_65145135
transcript_96164.known	chr9	+	2885	14	FSM	ENSMUSG00000015357.11	ENSMUST00000015501.11	2885	14	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_12	30.6779414999533	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCAATTTGTTTTTTTTGT	6151	False	NA	NA	False	AATAAA	-31	NA	65201541	65237939	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_65201848_65207182_65207347_65209129_65209248_65215749_65215905_65217433_65217594_65219379_65219422_65223925_65224103_65224610_65224776_65225944_65226034_65228100_65228266_65229825_65230126_65231488_65231582_65234063_65234171_65237095
transcript_96168.known	chr9	+	2809	13	FSM	ENSMUSG00000015357.11	ENSMUST00000113824.8	2809	13	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_5	89.4905333292609	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAATTTGTTTTTTTTGTC	6186	False	NA	NA	False	AATAAA	-32	NA	65201576	65237940	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_65201848_65207182_65207347_65209129_65209248_65215749_65215905_65217433_65217594_65223925_65224103_65224610_65224776_65225944_65226034_65228100_65228266_65229825_65230126_65231488_65231582_65234063_65234171_65237095
transcript_96169.known	chr9	+	2419	5	FSM	ENSMUSG00000041837.5	ENSMUST00000048184.4	2419	5	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_1	28.3846349280733	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTGCCCCTGATTTATT	NA	False	NA	42	True	AATAAA	-25	NA	65253385	65266925	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_65254291_65261891_65262031_65263526_65263764_65263999_65264088_65265875
transcript_96172.known	chr9	+	846	4	FSM	ENSMUSG00000086228.4	ENSMUST00000239433.2	846	4	0	0	0	0	multi-exon	FALSE	canonical	3	844	junction_1	5.79271573232759	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGCTGCAGAGGCAGGAGG	NA	False	NA	33	True	NA	NA	NA	65279127	65285331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_65279411_65281031_65281242_65284190_65284293_65285080
transcript_96175.known	chr9	+	2042	9	FSM	ENSMUSG00000059183.13	ENSMUST00000074792.7	2042	9	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_5	22.1472345903501	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAAGGCCTGCCCAGGG	NA	False	NA	NA	False	NA	NA	NA	65343063	65360336	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_65343290_65344269_65344480_65346811_65346935_65347627_65347731_65348894_65348971_65351160_65351253_65354505_65354585_65355977_65356061_65359286
transcript_96180.nic	chr9	+	968	4	ISM	ENSMUSG00000059183.13	ENSMUST00000132966.8	2563	8	-35	11692	-29	-6552	5prime_fragment	FALSE	canonical	3	143	junction_2	18.6607133363712	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGAGAGATCAAGACTGGA	NA	False	NA	NA	False	NA	NA	NA	65343034	65348007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_65343290_65344269_65344480_65346811_65346935_65347627
transcript_96182.nic	chr9	+	550	2	ISM	ENSMUSG00000059183.13	ENSMUST00000132966.8	2563	8	-35	15135	-29	-9995	5prime_fragment	FALSE	canonical	3	184	junction_1	0	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTGTTTGTTTTCTTTC	NA	False	NA	NA	False	ACTAAA	-16	NA	65343034	65344564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_65343290_65344269
transcript_96183.known	chr9	+	2563	8	FSM	ENSMUSG00000059183.13	ENSMUST00000132966.8	2563	8	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_4	22.2545569743019	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCTTGTATCCTTTGAAG	NA	False	NA	27	True	AATAAA	-28	NA	65343069	65359699	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_65343290_65344269_65344480_65346811_65346935_65347627_65348971_65351160_65351253_65354505_65354585_65355977_65356061_65359286
transcript_96187.known	chr9	+	2680	9	FSM	ENSMUSG00000032388.8	ENSMUST00000034955.8	2680	9	0	0	0	0	multi-exon	FALSE	canonical	3	680	junction_7	65.1440711039769	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTAAGGGGTTTTATTC	7176	False	NA	NA	False	AATAAA	-16	NA	65368228	65395752	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_65368437_65372545_65372633_65376056_65376219_65380919_65381001_65383121_65383268_65387660_65387770_65389142_65389251_65391723_65391865_65394114
transcript_96195.known	chr9	+	1302	8	FSM	ENSMUSG00000032388.8	ENSMUST00000213957.2	1302	8	0	0	0	0	multi-exon	FALSE	canonical	3	680	junction_7	64.9018096662888	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTACTAGACTGGGGTGA	7182	False	NA	NA	False	AATAAA	-22	NA	65368234	65392130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_65368437_65372545_65372633_65376056_65376219_65380919_65381001_65383121_65383268_65387660_65387770_65389142_65389251_65391723
transcript_96196.known	chr9	-	3273	6	FSM	ENSMUSG00000050721.10	ENSMUST00000068944.9	3273	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	5.23832034148352	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTCTGGCCCAAGCCTGT	NA	False	NA	NA	False	AATAAA	-16	NA	65487322	65461665	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_65464362_65465900_65466000_65466701_65466807_65471165_65471286_65480261_65480412_65487219
transcript_9620.nic	chr10	-	1503	2	ISM	ENSMUSG00000055531.13	ENSMUST00000177145.8	3819	9	-72	12843	-27	-470	5prime_fragment	FALSE	canonical	3	603	junction_1	0	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAGAAGAAGAAGAAGA	4444	False	NA	NA	False	NA	NA	NA	117212905	117202552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_117203894_117212743
transcript_96200.known	chr9	+	3395	13	FSM	ENSMUSG00000041064.15	ENSMUST00000134538.9	3395	13	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	37.6787406902088	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGTGCCTCCTGCCTGG	NA	False	NA	24	True	AATAAA	-14	NA	65494441	65503246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_65494534_65494865_65495677_65496286_65496420_65496496_65496623_65496732_65496887_65496994_65497110_65497229_65497337_65499001_65499142_65499405_65499513_65500543_65500632_65500738_65500885_65501668_65501861_65502062
transcript_96221.nnic	chr9	+	1516	3	NIC	ENSMUSG00000032387.16	novel	1987	8	NA	NA	-18	0	combination_of_known_splicesites	FALSE	canonical	3	70	junction_1	814.5	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTCTGATTTTTGCTTC	NA	False	NA	14	True	AATAAA	-14	NA	65537822	65567808	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_65538180_65566416_65566487_65566719
transcript_96224.known	chr9	+	1987	8	FSM	ENSMUSG00000032387.16	ENSMUST00000055844.10	1987	8	0	0	0	0	multi-exon	FALSE	canonical	3	1453	junction_4	112.168059042616	1569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTCTGATTTTTGCTTC	NA	False	NA	14	True	AATAAA	-14	NA	65537840	65567808	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_65538180_65556630_65556709_65557248_65557288_65557843_65557907_65558214_65558366_65558828_65558987_65566416_65566487_65566719
transcript_96225.known	chr9	+	1803	9	FSM	ENSMUSG00000032387.16	ENSMUST00000169003.8	1803	9	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_6	685.603919457145	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTGATTTTTGCTTCTA	NA	False	NA	16	True	AATAAA	-16	NA	65536929	65567810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_65537005_65537987_65538180_65556630_65556709_65557248_65557288_65557843_65557907_65558214_65558366_65558942_65558987_65566416_65566487_65566719
transcript_96226.nnic	chr9	+	2036	7	Fusion	ENSMUSG00000040652.17_ENSMUSG00000032387.16	novel	1987	8	NA	NA	-5	0	multi-exon	TRUE	non_canonical	0	0	junction_3	181.689065897391	281	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTCTGTCTTTTTATTC	NA	False	NA	23	True	AATAAA	-17	NA	65537835	65597582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr9_+_65538180_65582445_65582516_65593477_65593551_65593554_65593636_65595079_65595256_65596102_65596189_65596376
transcript_96228.known	chr9	+	1843	6	FSM	ENSMUSG00000040652.17	ENSMUST00000153700.9	1843	6	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_2	155.7934530075	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTCTGTCTTTTTATTC	4604	False	NA	23	True	AATAAA	-17	NA	65583829	65597582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_65584048_65593477_65593554_65593554_65593636_65595079_65595256_65596102_65596189_65596376
transcript_96229.known	chr9	+	700	5	FSM	ENSMUSG00000040652.17	ENSMUST00000136166.3	700	5	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	199.317585777071	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGCCCCACATTCTCTTG	4647	False	NA	NA	False	AATAAA	-13	NA	65583872	65595820	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_65584048_65593477_65593554_65593554_65593636_65595079_65595256_65595628
transcript_96230.nic	chr9	+	1995	5	ISM	ENSMUSG00000040652.17	ENSMUST00000046490.14	1840	6	30	3	-1	-3	intron_retention	FALSE	non_canonical	0	0	junction_2	171.34614089614	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTGGTCTGTCTTTTTA	4634	False	NA	20	True	AATAAA	-14	NA	65583859	65597579	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_65584048_65593477_65593551_65593554_65593636_65595079_65595256_65596102
transcript_96231.nnic	chr9	+	1772	5	NIC	ENSMUSG00000040652.17	novel	1840	6	NA	NA	-21	-3	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_2	197.594755750248	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTGGTCTGTCTTTTTA	4583	False	NA	20	True	AATAAA	-14	NA	65583808	65597579	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_65584048_65593477_65593551_65593554_65593636_65595079_65595256_65596376
transcript_96234.nnic	chr9	+	451	3	NNC	ENSMUSG00000040652.17	novel	1095	3	NA	NA	-21	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	211.5	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGGTCTGTCTTTTTATT	4583	False	NA	22	True	AATAAA	-16	NA	65583808	65597581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_65584048_65593477_65593514_65597405
transcript_96235.known	chr9	-	1999	13	FSM	ENSMUSG00000032386.16	ENSMUST00000117083.2	1999	13	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_4	28.3474229673332	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTCTAGGTCATTTTT	NA	False	NA	-8	True	TATAAA	-12	NA	65792338	65740437	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_65740731_65746216_65746320_65758648_65758741_65760107_65760233_65764605_65764794_65765527_65765655_65771485_65771702_65773753_65773884_65780380_65780460_65782112_65782326_65786356_65786491_65788172_65788343_65792209
transcript_9624.known	chr10	+	2006	3	FSM	ENSMUSG00000020183.12	ENSMUST00000141991.2	2006	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	3.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGATCTGAGTAATTTTGT	NA	False	NA	NA	False	NA	NA	NA	117511797	117520839	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_117511998_117515867_117516017_117519182
transcript_96240.known	chr9	-	3915	12	FSM	ENSMUSG00000032386.16	ENSMUST00000122410.8	3915	12	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_1	56.3782972135042	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAAGACTCAGTTTCCTT	NA	False	NA	NA	False	AGTAAA	-30	NA	65792337	65738417	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_65740731_65758648_65758741_65760107_65760233_65764605_65764794_65765527_65765655_65771485_65771702_65773753_65773884_65780380_65780460_65782112_65782326_65786356_65786491_65788172_65788343_65792209
transcript_96253.known	chr9	-	576	2	FSM	ENSMUSG00000032386.16	ENSMUST00000139346.2	576	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCATGTGATGGAAAGTT	NA	False	NA	NA	False	ATTAAA	-26	NA	65816068	65805582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_65805811_65815720
transcript_96254.nic	chr9	+	2707	15	NIC	ENSMUSG00000032384.17	novel	7208	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_2	5.25327885948483	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTGTCTGGTTATATTGG	NA	False	NA	NA	False	TATAAA	-18	NA	65816258	65947722	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_65816451_65828285_65828351_65857297_65857347_65865610_65866004_65880760_65880802_65888184_65888255_65906676_65906829_65909328_65909564_65915021_65915108_65917344_65917430_65917703_65917853_65920028_65920137_65927083_65927195_65939520_65939628_65946858
transcript_96255.known	chr9	+	7208	14	FSM	ENSMUSG00000032384.17	ENSMUST00000034949.10	7208	14	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	6.58040843321514	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTGTTTCATTAGCTG	NA	False	NA	27	True	AATAAA	-28	NA	65816267	65952297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_65816451_65857297_65857347_65865610_65866004_65880760_65880802_65888184_65888255_65906676_65906829_65909328_65909564_65915021_65915108_65917344_65917430_65917703_65917853_65920028_65920137_65927083_65927195_65939520_65939628_65946858
transcript_96259.known	chr9	+	4001	12	FSM	ENSMUSG00000032384.17	ENSMUST00000205379.2	4001	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_10	9.25220545519413	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCCAGGAAATGGTGGCAA	NA	False	NA	NA	False	NA	NA	NA	65816205	65949188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_65816451_65865610_65866004_65880760_65880802_65888184_65888255_65906676_65906829_65909328_65909564_65915021_65915108_65917344_65917430_65917703_65917853_65920028_65920137_65939520_65939628_65946858
transcript_9626.known	chr10	-	3145	12	FSM	ENSMUSG00000020184.16	ENSMUST00000105263.9	3145	12	0	0	0	0	multi-exon	TRUE	canonical	3	51	junction_9	142.979973168527	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTCAGTGATTTTG	NA	False	NA	1	True	AATAAA	-41	NA	117546663	117524779	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_117526691_117527049_117527128_117528486_117528643_117530809_117530974_117531857_117531955_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541135_117545558_117545690_117545850_117545934_117546456
transcript_96267.known	chr9	+	2771	4	FSM	ENSMUSG00000032384.17	ENSMUST00000124688.8	2771	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	8.17856276425687	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAAACAAAGAAAACTAA	NA	False	NA	NA	False	NA	NA	NA	65816311	65882950	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_65816451_65857297_65857347_65865610_65866004_65880760
transcript_96268.nic	chr9	+	542	3	ISM	ENSMUSG00000032384.17	ENSMUST00000146069.8	3087	8	3	53868	0	-8366	5prime_fragment	FALSE	canonical	3	13	junction_2	2	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCTAAATGCTTCTTACAA	NA	False	NA	NA	False	ATTAAA	-12	NA	65816258	65857582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_65816451_65828285_65828351_65857297
transcript_9627.known	chr10	-	3099	12	FSM	ENSMUSG00000020184.16	ENSMUST00000020408.16	3099	12	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_11	63.7658423031336	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTCAGTGATTTTG	NA	False	NA	1	True	AATAAA	-41	NA	117546663	117524779	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_117526691_117527049_117527128_117528486_117528643_117530809_117530974_117531857_117531955_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541135_117545604_117545690_117545850_117545934_117546456
transcript_96270.known	chr9	-	2543	7	FSM	ENSMUSG00000039452.7	ENSMUST00000044711.7	2543	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	2.43241991988774	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTGTCATTGTGTGGT	NA	False	NA	NA	False	AATAAA	-12	NA	65977001	65972457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_65974502_65974794_65974863_65975061_65975095_65975408_65975504_65975967_65976073_65976455_65976540_65976887
transcript_96287.known	chr9	+	892	5	FSM	ENSMUSG00000032383.8	ENSMUST00000034947.7	892	5	0	0	0	0	multi-exon	FALSE	canonical	3	2090	junction_4	160.535626886994	16488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTGGGTGTGGGCTGTGT	1574	False	NA	16	True	AATAAA	-16	NA	65967512	65973905	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_65967683_65968748_65968863_65970270_65970365_65972768_65972954_65973576
transcript_96288.known	chr9	+	3305	4	FSM	ENSMUSG00000032383.8	ENSMUST00000213785.2	3305	4	0	0	0	0	multi-exon	FALSE	canonical	3	2090	junction_3	185.159990878759	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTGGGTGTGGGCTGTGT	1565	False	NA	16	True	AATAAA	-16	NA	65967503	65973905	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_65967683_65968748_65968863_65970270_65972954_65973576
transcript_96293.known	chr9	-	2073	15	FSM	ENSMUSG00000032382.15	ENSMUST00000034946.15	2073	15	0	0	0	0	multi-exon	FALSE	canonical	2	266	junction_13	37.3054135153468	590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGACTGGGCATGGTAGCA	NA	False	NA	-4	True	AATAAA	-20	NA	66032168	65995414	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_65995852_65996399_65996472_65996809_65996891_65997868_65998013_66000440_66000647_66001640_66001735_66001903_66002018_66003839_66003916_66004680_66004760_66005612_66005755_66008622_66008667_66012154_66012219_66012802_66012931_66016798_66016911_66031888
transcript_96294.nic	chr9	-	1948	15	NIC	ENSMUSG00000032382.15	novel	2073	15	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_14	103.740477802514	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGACTGGGCATGGTAGCA	NA	False	NA	-4	True	AATAAA	-20	NA	66033879	65995414	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_65995852_65996399_65996472_65996809_65996891_65997868_65998013_66000440_66000647_66001640_66001735_66001903_66002018_66003839_66003916_66004680_66004760_66005612_66005755_66008622_66008667_66012154_66012219_66012802_66012931_66016798_66016911_66033724
transcript_96309.known	chr9	+	1240	5	FSM	ENSMUSG00000032381.6	ENSMUST00000034945.6	1240	5	0	0	0	0	multi-exon	FALSE	canonical	3	677	junction_3	21.6376408140999	2629	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGCTCACCTTAGGTTTT	1383	False	NA	17	True	AATAAA	-18	NA	66033892	66046237	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_66034253_66039808_66039974_66040713_66040764_66043583_66043630_66045618
transcript_96310.known	chr9	+	1772	12	FSM	ENSMUSG00000032380.10	ENSMUST00000034944.9	1772	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	2.90340353139478	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGGTGTTTTAGAGCT	4134	False	NA	NA	False	ATTAAA	-17	NA	66065504	66179524	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_66065623_66072619_66072718_66127815_66128038_66138994_66139134_66153698_66153829_66157618_66157668_66158356_66158384_66161752_66161906_66162612_66162659_66175960_66176051_66176148_66176233_66178908
transcript_96312.known	chr9	-	5607	15	FSM	ENSMUSG00000032376.13	ENSMUST00000127569.8	5607	15	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_11	15.624418356521	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTCCACCAGTCCTGATC	NA	False	NA	NA	False	AATAAA	-19	NA	66500424	66421918	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_66425861_66427378_66427447_66427554_66427669_66427890_66428010_66434220_66434302_66434396_66434504_66437525_66437673_66447343_66447458_66449794_66449909_66451227_66451311_66453025_66453108_66455153_66455238_66469835_66469968_66474124_66474186_66500065
transcript_96316.known	chr9	-	2797	14	FSM	ENSMUSG00000032376.13	ENSMUST00000098613.9	2797	14	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_8	36.8152271043594	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACACTAACTTGAATCCC	NA	False	NA	NA	False	NA	NA	NA	66500318	66424508	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_66425861_66427378_66427447_66427554_66427669_66427890_66428010_66434220_66434302_66434396_66434504_66437525_66437673_66447343_66447458_66451227_66451311_66453025_66453108_66455153_66455238_66469835_66469968_66474124_66474186_66500065
transcript_96320.known	chr9	-	3662	13	FSM	ENSMUSG00000032376.13	ENSMUST00000139547.8	3662	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	50.5625987157394	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCCTGGTTGAGTGTCGT	NA	False	NA	NA	False	ATTAAA	-15	NA	66500282	66423515	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_66425861_66427378_66427447_66427554_66427669_66427890_66428010_66434220_66434302_66434396_66434504_66437525_66437673_66447343_66447458_66449794_66449896_66451227_66451311_66453025_66453108_66455153_66455238_66500065
transcript_96327.known	chr9	-	4910	6	FSM	ENSMUSG00000032375.16	ENSMUST00000034934.15	4910	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	4.70744091837593	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCTTGGGGGTTTGCCTT	NA	False	NA	NA	False	AATAAA	-18	NA	66702772	66682483	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_66686663_66691799_66691928_66696927_66697051_66697879_66697951_66701351_66701523_66702534
transcript_96328.nnic	chr9	-	1729	6	NNC	ENSMUSG00000053040.14	novel	5205	6	NA	NA	7	364	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	5.76194411635517	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCGTAGCCCTTGTCTTT	NA	False	NA	-1	True	AGTAAA	-17	NA	66742001	66726201	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_66726744_66729515_66729644_66735018_66735142_66735954_66736029_66740440_66740612_66741310
transcript_96329.known	chr9	-	5205	6	FSM	ENSMUSG00000053040.14	ENSMUST00000169282.8	5205	6	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	3.03315017762062	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTGTGTGTGTGGAGGT	NA	False	NA	NA	False	ATTAAA	-14	NA	66742008	66722275	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_66726744_66729515_66729644_66735018_66735142_66735954_66736029_66740440_66740612_66741767
transcript_9633.nic	chr10	-	769	6	ISM	ENSMUSG00000020184.16	ENSMUST00000132277.8	3007	10	-76	11324	-3	826	5prime_fragment	FALSE	canonical	3	316	junction_5	86.4731172099168	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAAACCTTTGAGTAGCT	NA	False	NA	NA	False	NA	NA	NA	117546666	117537337	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_117537520_117538106_117538241_117541059_117541135_117545604_117545690_117545850_117545934_117546456
transcript_96330.known	chr9	-	715	6	FSM	ENSMUSG00000053040.14	ENSMUST00000057261.9	715	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	5.41848687365763	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCACCTCTAAGCAGCAG	NA	False	NA	NA	False	NA	NA	NA	66741930	66726565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_66726744_66729515_66729644_66735018_66735142_66735954_66736029_66740440_66740612_66741889
transcript_96334.known	chr9	-	4733	8	FSM	ENSMUSG00000036943.10	ENSMUST00000041139.9	4733	8	0	0	0	0	multi-exon	FALSE	canonical	2	19	junction_5	12.9992150469455	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGACTCTTAAGTGGATT	7751	False	NA	-1	True	AATAAA	-21	NA	66826969	66750945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_66755094_66755879_66755931_66758615_66758682_66760208_66760299_66761949_66762028_66768118_66768180_66770704_66770766_66826791
transcript_96345.known	chr9	+	566	4	FSM	ENSMUSG00000036781.14	ENSMUST00000143044.2	566	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	5436.29598164044	5954	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCCTCCCTCTGCTTCTCT	NA	False	NA	34	True	AATAAA	-18	NA	66853636	66856798	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_66853795_66854112_66854222_66854868_66854980_66856610
transcript_96348.known	chr9	+	499	4	FSM	ENSMUSG00000036781.14	ENSMUST00000040917.14	499	4	0	0	0	0	multi-exon	FALSE	canonical	3	10808	junction_3	618.277355956765	78183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGTTCCTCCCTCTGCTT	NA	False	NA	30	True	AATAAA	-14	NA	66853367	66856794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_66853463_66854112_66854222_66854868_66854980_66856610
transcript_96349.known	chr9	+	575	5	FSM	ENSMUSG00000036781.14	ENSMUST00000127896.8	575	5	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_3	5596.89320069626	2516	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTCCTCCCTCTGCTTCT	NA	False	NA	32	True	AATAAA	-16	NA	66853372	66856796	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_66853463_66854112_66854222_66854868_66854980_66855920_66856000_66856610
transcript_96350.known	chr9	+	452	5	FSM	ENSMUSG00000036781.14	ENSMUST00000147394.8	452	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_3	5638.10178051975	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTATTTTGGTGTCAGT	NA	False	NA	-14	True	TATAAA	-15	NA	66853447	66856750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_66853463_66854112_66854222_66854868_66854980_66855922_66856000_66856610
transcript_96351.known	chr9	-	1259	10	FSM	ENSMUSG00000032366.16	ENSMUST00000050905.16	1259	10	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_8	231.62890712794	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGGGTACTTTTTTATT	NA	False	NA	1	True	AATAAA	-22	NA	66956546	66935173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_66935450_66936945_66937025_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66955067_66955194_66956300
transcript_96353.known	chr9	-	1208	10	FSM	ENSMUSG00000032366.16	ENSMUST00000113685.10	1208	10	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_8	231.53598765688	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGGGTACTTTTTTATT	NA	False	NA	1	True	AATAAA	-22	NA	66956495	66935173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_66935450_66936945_66937025_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66955067_66955194_66956300
transcript_96356.known	chr9	-	1898	9	FSM	ENSMUSG00000032366.16	ENSMUST00000113707.9	1898	9	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_7	239.532846129711	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGTGGTCCTGTCGTCTG	NA	False	NA	0	True	AATAAA	-26	NA	66956688	66929871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66955067_66955194_66956300
transcript_96358.known	chr9	-	1742	9	FSM	ENSMUSG00000032366.16	ENSMUST00000113697.8	1742	9	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_7	230.863460729497	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGCACATTTAGGACATTTT	NA	False	NA	-25	True	AATAAA	-1	NA	66956557	66929896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66955067_66955194_66956300
transcript_96362.known	chr9	-	887	9	FSM	ENSMUSG00000032366.16	ENSMUST00000113684.8	887	9	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	167.222110903433	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAGGGCCAGGCACAGACT	NA	False	NA	-90	True	NA	NA	NA	66951015	66935329	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_66935450_66936945_66937025_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66950859
transcript_96363.nic	chr9	-	1193	9	NIC	ENSMUSG00000032366.16	novel	1208	10	NA	NA	-3	-8	combination_of_known_junctions	FALSE	canonical	3	173	junction_1	203.579683416592	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTTTGCTATTCTTTT	NA	False	NA	-16	True	AATAAA	-13	NA	66951247	66935255	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_66935450_66936945_66937025_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
transcript_96367.known	chr9	-	1607	8	FSM	ENSMUSG00000032366.16	ENSMUST00000113695.8	1607	8	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_4	182.146722648058	731	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTGGTGGTCCTGTCGTC	NA	False	NA	-2	True	AATAAA	-24	NA	66951084	66929873	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
transcript_96371.known	chr9	-	1714	8	FSM	ENSMUSG00000032366.16	ENSMUST00000113696.8	1714	8	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_1	100.853500541273	1037	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGTGGTCCTGTCGTCTG	NA	False	NA	0	True	AATAAA	-26	NA	66951189	66929871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66950859
transcript_96374.known	chr9	-	998	8	FSM	ENSMUSG00000032366.16	ENSMUST00000113686.8	998	8	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_1	241.339544025019	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTATTCTTTTACTCCTTA	NA	False	NA	-8	True	AATAAA	-21	NA	66951123	66935247	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_66935450_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
transcript_96386.known	chr9	-	2890	8	FSM	ENSMUSG00000032366.16	ENSMUST00000113690.8	2890	8	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	240.867395138521	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCTGGTGGTCCTGTCGT	NA	False	NA	-3	True	AATAAA	-23	NA	66951244	66929874	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_66931848_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
transcript_9639.known	chr10	-	3098	28	FSM	ENSMUSG00000052798.14	ENSMUST00000167943.8	3098	28	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_26	174.04731866881	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGATGAGAGTTTTCTCTT	NA	False	NA	-7	True	AATAAA	-26	NA	117628603	117586528	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_117586873_117587224_117587393_117593171_117593286_117593800_117593927_117595076_117595238_117597149_117597253_117597927_117598041_117599635_117599787_117600221_117600261_117601815_117601935_117602238_117602309_117606092_117606142_117606280_117606427_117607238_117607299_117608959_117609037_117609180_117609272_117610360_117610475_117612115_117612195_117613033_117613123_117613497_117613570_117616582_117616632_117617225_117617354_117617861_117617966_117620899_117621045_117623697_117623817_117625878_117625960_117626371_117626464_117628508
transcript_96391.known	chr9	-	5152	32	FSM	ENSMUSG00000052698.16	ENSMUST00000217550.2	5152	32	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	18.7639923510167	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAAAGCTGTTTCAGTTTA	NA	False	NA	-7	True	AATAAA	-19	NA	67237929	67127935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_67128801_67131257_67131384_67134344_67134573_67134663_67134727_67136613_67136740_67147961_67148087_67149608_67149715_67157824_67157933_67163140_67163327_67165469_67165587_67165743_67165870_67169172_67169357_67170095_67170263_67174058_67174206_67179891_67180012_67182602_67182705_67185264_67185412_67193739_67193911_67197263_67197366_67201086_67201220_67202916_67203099_67203583_67203725_67209755_67209918_67212117_67212262_67213701_67213825_67216151_67216242_67219082_67219177_67225464_67225605_67226598_67226797_67229120_67229241_67230254_67230464_67237829
transcript_96393.known	chr9	-	1414	2	FSM	ENSMUSG00000055125.8	ENSMUST00000186205.2	1414	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAATGACTTGGGGGGAGA	NA	False	NA	NA	False	AATAAA	-17	NA	67667512	67665994	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_67666326_67666429
transcript_96396.nic	chr9	+	476	5	ISM	ENSMUSG00000035284.11	ENSMUST00000217386.2	2669	27	-70	44919	-54	-44919	5prime_fragment	FALSE	canonical	2	3	junction_3	1.4790199457749	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTTTATTAATTAAGCTC	NA	False	NA	NA	False	NA	NA	NA	67747623	67768173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_67747809_67759772_67759817_67760977_67761021_67766071_67766168_67768065
transcript_96398.known	chr9	+	4169	16	FSM	ENSMUSG00000032235.16	ENSMUST00000034761.15	4169	16	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	13.7737270030865	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTGTTGTTCTTTAGA	4652	False	NA	69	True	AATACA	-21	NA	69305187	69340404	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_69305336_69306227_69306370_69307758_69307864_69314398_69314649_69315541_69315662_69317393_69317532_69318054_69318172_69318588_69318749_69319483_69319666_69322619_69323644_69324215_69324392_69328942_69329073_69332938_69333024_69334132_69334184_69335597_69335857_69339322
transcript_96404.known	chr9	+	1201	4	FSM	ENSMUSG00000032235.16	ENSMUST00000117246.8	1201	4	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	16.8588914885357	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAATTTTGGTCATTTGCT	4683	False	NA	NA	False	AATAAA	-18	NA	69305218	69315235	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_69305336_69306227_69306370_69307758_69307864_69314398
transcript_96406.known	chr9	+	1447	13	FSM	ENSMUSG00000032231.15	ENSMUST00000034756.15	1447	13	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_7	12.0908022893437	178	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGTTGCCTTTGCTTTCA	NA	False	NA	NA	False	AATAAA	-25	NA	69360901	69399077	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_69361022_69371741_69371807_69374572_69374673_69383334_69383430_69386959_69387074_69390255_69390347_69391061_69391142_69392479_69392540_69393751_69393846_69394834_69394931_69395336_69395396_69396933_69397057_69398727
transcript_96408.known	chr9	-	1569	1	FSM	ENSMUSG00000101555.2	ENSMUST00000185564.2	1569	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAAGATCTCAACTTCTG	NA	False	NA	NA	False	NA	NA	NA	69897250	69895681	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_69895700_69897200
transcript_96409.known	chr9	+	2328	10	FSM	ENSMUSG00000011958.18	ENSMUST00000085393.13	2328	10	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_9	27.3933397330153	1294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGGGTCTTAATTACCT	NA	False	NA	17	True	AATAAA	-17	NA	69896785	69915537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_69896972_69902702_69902810_69903399_69903468_69904362_69904540_69906375_69906553_69908124_69908228_69909261_69909394_69910660_69910748_69910850_69910950_69914345
transcript_96410.known	chr9	+	2464	11	FSM	ENSMUSG00000011958.18	ENSMUST00000034754.12	2464	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_9	104.017354321286	558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGACTTCTCTGGTGTATA	NA	False	NA	79	True	AATGAA	-19	NA	69896747	69915599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_69896972_69902702_69902810_69903399_69903468_69904362_69904540_69906375_69906553_69908124_69908228_69909261_69909394_69910660_69910748_69910850_69910950_69911587_69911624_69914345
transcript_96411.known	chr9	+	1465	9	FSM	ENSMUSG00000011958.18	ENSMUST00000117450.8	1465	9	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_7	18.7345769901538	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACTAGAATTTTCTGTT	NA	False	NA	NA	False	ATTAAA	-24	NA	69896796	69911289	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_69896972_69902702_69902810_69903399_69903468_69904362_69904540_69906375_69906553_69908124_69908228_69909261_69909394_69910660_69910748_69910850
transcript_96416.known	chr9	+	1034	5	FSM	ENSMUSG00000033543.18	ENSMUST00000119413.8	1034	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	343.832444658732	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGTGAGTAATACTTGAT	NA	False	NA	17	True	AATAAA	-15	NA	69919852	69930019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_69920235_69922573_69922693_69924100_69924206_69926670_69926798_69929718
transcript_96421.known	chr9	+	893	5	FSM	ENSMUSG00000033543.18	ENSMUST00000118198.8	893	5	0	0	0	0	multi-exon	FALSE	canonical	3	697	junction_3	95.7131129992124	2371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATATTGAATATACCAGAAG	NA	False	NA	NA	False	AATAAA	-34	NA	69919831	69930148	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_69919944_69922573_69922693_69924100_69924206_69926670_69926798_69929718
transcript_96422.known	chr9	+	622	4	FSM	ENSMUSG00000033543.18	ENSMUST00000119905.8	622	4	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	423.805248774586	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGTGAGTAATACTTGAT	NA	False	NA	17	True	AATAAA	-15	NA	69919846	69930019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_69919944_69922573_69922693_69924100_69924206_69929718
transcript_96423.known	chr9	+	888	6	FSM	ENSMUSG00000033543.18	ENSMUST00000116552.8	888	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	405.059798054559	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTGAGTAATACTTGATG	NA	False	NA	18	True	AATAAA	-16	NA	69919847	69930020	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_69919944_69922573_69922693_69924100_69924206_69925961_69926101_69926670_69926798_69929718
transcript_96424.known	chr9	+	1199	6	FSM	ENSMUSG00000033543.18	ENSMUST00000131078.8	1199	6	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	384.735441569918	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTGAGTAATACTTGATG	NA	False	NA	18	True	AATAAA	-16	NA	69919835	69930020	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_69919944_69922573_69922693_69923049_69923220_69924100_69924474_69926670_69926798_69929718
transcript_96425.known	chr9	+	791	6	FSM	ENSMUSG00000033543.18	ENSMUST00000140265.8	791	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	407.297728940391	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTGAGTAATACTTGATG	NA	False	NA	18	True	AATAAA	-16	NA	69919924	69930020	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_69919944_69922573_69922693_69924100_69924206_69924354_69924474_69926670_69926798_69929718
transcript_96426.known	chr9	+	1613	3	FSM	ENSMUSG00000033543.18	ENSMUST00000126120.8	1613	3	0	0	0	0	multi-exon	FALSE	canonical	3	899	junction_2	4	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAGAAAAAAAAAATC	NA	False	NA	NA	False	NA	NA	NA	69919852	69925503	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_69919944_69922573_69922693_69924100
transcript_96427.known	chr9	+	659	4	FSM	ENSMUSG00000033543.18	ENSMUST00000148239.8	659	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	305.278379334156	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGTGAGTAATACTTGAT	NA	False	NA	17	True	AATAAA	-15	NA	69923093	69930019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_69923220_69924100_69924206_69926670_69926798_69929718
transcript_96429.known	chr9	-	3703	9	FSM	ENSMUSG00000032224.16	ENSMUST00000034749.16	3703	9	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_1	14.7118149798045	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGTGGCATGGGACTTT	NA	False	NA	-20	True	AATAAA	-19	NA	70048860	69995792	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_69998174_70000772_70000966_70003332_70003469_70006369_70006477_70010101_70010232_70017539_70017659_70032205_70032480_70033468_70033566_70048594
transcript_96434.known	chr9	+	4625	28	FSM	ENSMUSG00000032220.11	ENSMUST00000034745.9	4625	28	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_9	20.3906969292862	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTGTTTCTTCATGACA	NA	False	NA	20	True	AATAAA	-20	NA	70114649	70307048	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_70114986_70194193_70194338_70204548_70204639_70208974_70209070_70223873_70223962_70227350_70227441_70229673_70229806_70232114_70232250_70234425_70234559_70242396_70242594_70245010_70245092_70245998_70246086_70248562_70248650_70249263_70249432_70250325_70250412_70253968_70254051_70260541_70260649_70266566_70266666_70269504_70269650_70274897_70275013_70275950_70276121_70277638_70277785_70283785_70283933_70285492_70285651_70286002_70286093_70291085_70291288_70303057_70303228_70306003
transcript_96435.known	chr9	+	1260	4	FSM	ENSMUSG00000032220.11	ENSMUST00000213863.2	1260	4	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_2	2.16024689946929	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GCACAAATAAAAAAAGAACC	NA	False	NA	NA	False	NA	NA	NA	70114631	70209646	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_70114986_70194193_70194338_70204548_70204639_70208974
transcript_96436.known	chr9	-	1531	9	FSM	ENSMUSG00000032218.8	ENSMUST00000034742.8	1531	9	0	0	0	0	multi-exon	FALSE	canonical	3	1324	junction_2	68.4557338723353	2063	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGGTATCCTGTGTATAT	NA	False	NA	-8	True	AATAAA	-14	NA	70328829	70314973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_70315312_70316561_70316673_70317402_70317544_70317936_70318174_70320123_70320283_70320383_70320555_70326075_70326190_70326282_70326412_70328698
transcript_96438.known	chr9	+	3691	21	FSM	ENSMUSG00000032212.11	ENSMUST00000049263.9	3691	21	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_6	54.986612006924	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTTGCTAATGTATTGAGA	NA	False	NA	15	True	AATAAA	-16	NA	70450151	70499514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_70450364_70451251_70451340_70466318_70466384_70469057_70469256_70470095_70470144_70479430_70479459_70480738_70481208_70481857_70481908_70484003_70484123_70486563_70486714_70487233_70487338_70487448_70487613_70488064_70488151_70488582_70488747_70491213_70491395_70492034_70492160_70493205_70493371_70493916_70494232_70494332_70494478_70496238_70496400_70498860
transcript_96439.known	chr9	+	3755	21	FSM	ENSMUSG00000032212.11	ENSMUST00000216816.2	3755	21	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_6	63.2220491600834	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGCTAATGTATTGAGAAC	NA	False	NA	17	True	AATAAA	-18	NA	70450035	70499516	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_70450364_70451251_70451340_70466318_70466384_70469057_70469256_70470095_70470144_70479430_70479459_70480792_70481208_70481857_70481908_70484003_70484123_70486563_70486714_70487233_70487338_70487448_70487613_70488064_70488151_70488582_70488747_70491213_70491395_70492034_70492160_70493205_70493371_70493916_70494232_70494332_70494478_70496238_70496400_70498860
transcript_96454.nic	chr9	+	808	6	ISM	ENSMUSG00000032212.11	ENSMUST00000217593.2	3319	20	-90	19786	-4	-7186	5prime_fragment	FALSE	canonical	3	203	junction_1	16.4365446490435	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAAATAGTTTCTTTTC	NA	False	NA	NA	False	AATAAA	-22	NA	70450071	70479547	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_70450364_70451251_70451340_70466318_70466384_70469057_70469256_70470095_70470144_70479430
transcript_96456.known	chr9	+	1066	2	FSM	ENSMUSG00000032212.11	ENSMUST00000215714.2	1066	2	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACATCTGGTGAGTATA	NA	False	NA	NA	False	AATAAA	-16	NA	70450075	70452029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_70450364_70451251
transcript_96457.known	chr9	+	4593	16	FSM	ENSMUSG00000054693.15	ENSMUST00000067880.13	4593	16	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_13	22.3632635264971	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGGTCTATGCTCTTTG	4950	False	NA	14	True	AATAAA	-19	NA	70586278	70687511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_70586542_70610568_70610720_70625939_70626059_70629894_70630054_70647356_70647458_70651132_70651286_70653515_70653609_70655364_70655549_70661443_70661608_70668864_70669049_70673233_70673385_70674153_70674338_70675090_70675200_70676073_70676295_70683654_70683782_70685281
transcript_96459.nic	chr9	+	371	2	ISM	ENSMUSG00000054693.15	ENSMUST00000140205.8	2720	16	-68	75056	-68	-44788	5prime_fragment	FALSE	canonical	3	245	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGGATTATCTTACAATG	4882	False	NA	NA	False	AATAAA	-15	NA	70586210	70610608	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_70586542_70610568
transcript_96461.nic	chr9	-	1233	5	ISM	ENSMUSG00000032207.11	ENSMUST00000034731.10	1920	9	117784	123	117589	-79	3prime_fragment	FALSE	canonical	3	43	junction_2	8.95823643358446	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTAATGGTTGCCTTATT	NA	False	NA	NA	False	AATAAA	-16	NA	70724306	70705532	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_-_70705691_70709354_70709574_70710978_70711097_70719951_70720195_70723811
transcript_96465.known	chr9	+	2264	14	FSM	ENSMUSG00000013584.6	ENSMUST00000034723.6	2264	14	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	2.4973358585766	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGTTTGTGTTTGTGAG	NA	False	NA	NA	False	AATAAA	-24	NA	71123070	71203525	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_71123246_71159879_71159985_71160197_71160339_71162315_71162446_71169012_71169075_71171068_71171198_71171314_71171429_71188885_71188989_71190659_71190845_71192135_71192301_71192397_71192556_71193201_71193277_71200887_71200977_71202892
transcript_96466.known	chr9	-	2138	4	FSM	ENSMUSG00000032199.14	ENSMUST00000163972.2	2138	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	1098.58130736368	1676	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCCCCGAGCTCATGGCG	3447	False	NA	-33	True	AATAAA	-15	NA	71392240	71385752	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_71386823_71388623_71388829_71390448_71391088_71392016
transcript_96467.known	chr9	-	2200	4	FSM	ENSMUSG00000032199.14	ENSMUST00000034720.12	2200	4	0	0	0	0	multi-exon	FALSE	canonical	3	2231	junction_1	103.721850264167	1778	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTGAGTTTCCGTTCT	2470	False	NA	1	True	NA	NA	NA	71393217	71385718	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_71386823_71388623_71388829_71390448_71391088_71392965
transcript_96468.known	chr9	-	2283	13	FSM	ENSMUSG00000041361.14	ENSMUST00000093823.8	2283	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.32024829314624	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTAGTGTCTCTTTTCTAT	NA	False	NA	NA	False	AATAAA	-18	NA	71499642	71411628	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_71412512_71422350_71422452_71432063_71432148_71453950_71454057_71456005_71456086_71457460_71457590_71459520_71459647_71462866_71463020_71466129_71466244_71468236_71468330_71471691_71471848_71486892_71486980_71499471
transcript_96469.known	chr9	+	613	1	FSM	ENSMUSG00000098915.2	ENSMUST00000184247.2	613	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACACATGATATTTGTAAAA	NA	False	NA	NA	False	NA	NA	NA	71968218	71968831	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_71968200_71968800
transcript_96471.known	chr9	+	4387	22	FSM	ENSMUSG00000038535.18	ENSMUST00000098576.10	4387	22	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_20	11.1161666503221	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCCTGTTTGGCTAGCCT	NA	False	NA	20	True	AATAAA	-29	NA	72182160	72271059	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_72182312_72202560_72202605_72203256_72203318_72205983_72206131_72208982_72209049_72209148_72209289_72215232_72215351_72219359_72219531_72219932_72220043_72226373_72226598_72229734_72229893_72230281_72230383_72231289_72231437_72236309_72236445_72238147_72238456_72238574_72238716_72242328_72242392_72246027_72246147_72246293_72246331_72258806_72258853_72267567_72267624_72269215
transcript_96473.known	chr9	+	4200	21	FSM	ENSMUSG00000038535.18	ENSMUST00000183410.8	4200	21	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_19	12.0883208097734	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAATTTTATATTCAGATT	NA	False	NA	4	True	AATAAA	-13	NA	72182285	72271043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_72182312_72202560_72202605_72203256_72203318_72205983_72206131_72208982_72209049_72209148_72209289_72215232_72215351_72219359_72219531_72219932_72220043_72226373_72226598_72229734_72229893_72230281_72230383_72231289_72231437_72236309_72236445_72238147_72238456_72238574_72238716_72242328_72242392_72246027_72246147_72246293_72246331_72267567_72267624_72269215
transcript_96477.known	chr9	+	3062	2	FSM	ENSMUSG00000038535.18	ENSMUST00000184968.2	3062	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAGAAAAAAAAAAACC	NA	False	NA	NA	False	NA	NA	NA	72182196	72196015	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_72182312_72193068
transcript_96482.known	chr9	+	5250	10	FSM	ENSMUSG00000032221.15	ENSMUST00000034746.10	5250	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_2	21.6834692682276	157	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACATTGTTCTTTATATT	NA	False	NA	NA	False	AATAAA	-19	NA	72345816	72369307	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_72345962_72346521_72346744_72352124_72352253_72353488_72353592_72355810_72356041_72356432_72356650_72356733_72356842_72359862_72360121_72364059_72364186_72365594
transcript_96483.known	chr9	-	3904	11	FSM	ENSMUSG00000090626.10	ENSMUST00000085358.12	3904	11	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_3	28.6581576518799	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTAATGTGTTTAATTTT	7881	False	NA	NA	False	AATAAA	-23	NA	72399238	72365853	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_72368561_72369137_72369273_72380939_72381075_72385018_72385193_72385621_72385705_72387878_72388058_72389728_72389812_72391350_72391397_72394061_72394142_72395293_72395358_72399020
transcript_96484.known	chr9	-	726	7	FSM	ENSMUSG00000090626.10	ENSMUST00000185151.8	726	7	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_3	79.6968213502479	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACATCCCAGCAATCCCAA	7898	False	NA	NA	False	NA	NA	NA	72399221	72385119	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_72385193_72385621_72385705_72387878_72388058_72391350_72391397_72394061_72394142_72395293_72395358_72399020
transcript_96485.nnic	chr9	-	1342	3	NNC	ENSMUSG00000096986.3	novel	1191	3	NA	NA	1462	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1.5	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTTTCATGATGTCCTG	NA	False	NA	NA	False	AATAAA	-32	NA	72437678	72425526	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_72426573_72429482_72429584_72437483
transcript_96487.known	chr9	+	1457	8	FSM	ENSMUSG00000037674.16	ENSMUST00000183372.8	1457	8	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	37.8380005512221	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGACTGATTACCTGGTTTT	1046	False	NA	9	True	AATAAA	-18	NA	72439890	72519705	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_72439940_72440099_72440263_72484320_72484355_72499032_72499116_72500519_72500643_72514904_72515022_72517585_72517671_72518902
transcript_96488.known	chr9	+	1554	7	FSM	ENSMUSG00000037674.16	ENSMUST00000184015.2	1554	7	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_3	16.2933183305987	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCTTTGTTTTTGGTTGGT	1172	False	NA	72	True	AATAAA	-30	NA	72440016	72519768	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_72440263_72484320_72484355_72499032_72499116_72500519_72500643_72514904_72515022_72517585_72517671_72518902
transcript_96492.known	chr9	+	5499	29	FSM	ENSMUSG00000032216.16	ENSMUST00000034740.15	5499	29	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	553.560943449088	607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGGCTCCGTTACCTAAA	NA	False	NA	NA	False	AATAAA	-27	NA	72569627	72657134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
transcript_96498.nnic	chr9	+	683	4	NNC	ENSMUSG00000032216.16	novel	660	8	NA	NA	-46	600	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1391.82190750908	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGGGTGTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	72569673	72580030	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_72569896_72577233_72577399_72578511_72578586_72579808
transcript_96500.known	chr9	+	1260	3	FSM	ENSMUSG00000032216.16	ENSMUST00000184737.2	1260	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	1476.5	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGAGAAAGAATATATGCTC	NA	False	NA	NA	False	NA	NA	NA	72569719	72579430	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_72569896_72577233_72577399_72578511
transcript_96502.known	chr9	+	312	2	FSM	ENSMUSG00000032216.16	ENSMUST00000184386.2	312	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCAAATGGGTGGGGCAT	NA	False	NA	NA	False	NA	NA	NA	72569771	72570581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_72569896_72570393
transcript_96503.known	chr9	+	3329	10	FSM	ENSMUSG00000032216.16	ENSMUST00000184450.8	3329	10	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	906.918361033807	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCATTTGTGCCGTTAGTT	NA	False	NA	NA	False	AATAAA	-17	NA	72569763	72628072	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499
transcript_96506.nnic	chr9	-	741	3	NNC	ENSMUSG00000098294.2	novel	527	2	NA	NA	-2966	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	1	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCAGCTGTCTCTCTTGTT	4572	False	NA	NA	False	NA	NA	NA	72686473	72681344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_72681693_72683328_72683532_72686283
transcript_96507.known	chr9	+	7916	3	FSM	ENSMUSG00000034910.6	ENSMUST00000038489.6	7916	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	1	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTGTGTAATTCTAATGA	NA	False	NA	NA	False	AAAAAG	-43	NA	72832926	72859463	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_72833243_72850201_72850288_72851949
transcript_96508.known	chr9	-	2079	13	FSM	ENSMUSG00000079469.11	ENSMUST00000184389.8	2079	13	0	0	0	0	multi-exon	FALSE	non_canonical	1	2	junction_1	17.0609609603002	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCCAAAATCAAGTTGCTT	NA	False	NA	-11	True	AATAAA	-13	NA	72946933	72921945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_72922333_72923430_72923578_72924672_72924854_72925151_72925366_72928567_72928633_72929556_72929769_72930510_72930563_72936847_72936989_72939334_72939466_72941768_72941874_72943985_72944104_72945904_72946041_72946743
transcript_9651.known	chr10	-	1233	9	FSM	ENSMUSG00000052798.14	ENSMUST00000218810.2	1233	9	0	0	0	0	multi-exon	FALSE	canonical	3	814	junction_2	29.4522919311893	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGGTCTTTCTTATTTT	NA	False	NA	NA	False	AATAAA	-14	NA	117628603	117613155	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_117613570_117616582_117616632_117617225_117617354_117617861_117617966_117620899_117621045_117623697_117623817_117625878_117625966_117626371_117626464_117628508
transcript_96510.known	chr9	-	2193	12	FSM	ENSMUSG00000079469.11	ENSMUST00000098566.5	2193	12	0	0	0	0	multi-exon	FALSE	non_canonical	3	35	junction_5	10.1158577744251	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCCCCCCCAGCAGGAAAA	NA	False	NA	NA	False	AATAAA	-16	NA	72946981	72922977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_72923578_72924672_72924854_72925151_72925366_72928567_72928633_72929556_72929769_72930510_72930563_72936847_72936989_72939334_72939466_72941768_72941874_72943985_72944104_72945904_72946041_72946743
transcript_96514.known	chr9	+	1975	9	FSM	ENSMUSG00000092192.8	ENSMUST00000034734.9	1975	9	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	4.44233891097922	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTACTCTGAAAACCTTATT	9178	False	NA	NA	False	AATAAA	-15	NA	72866066	72880346	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_72866280_72867863_72868012_72868539_72868674_72869196_72869423_72871372_72871519_72872450_72872561_72876313_72876468_72879254_72879361_72879608
transcript_96517.known	chr9	+	3151	9	FSM	ENSMUSG00000034563.17	ENSMUST00000037977.15	3151	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	60.1040764008565	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTAGAGTTGCCAATTACG	NA	False	NA	7	True	AATAAA	-31	NA	72892710	72923622	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_72892956_72904683_72904753_72906305_72906427_72906744_72906822_72908958_72909158_72912922_72913175_72917578_72917695_72919211_72920275_72922613
transcript_96518.known	chr9	+	2969	9	FSM	ENSMUSG00000034563.17	ENSMUST00000085350.11	2969	9	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_8	47.1963981676568	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCTCTCAAGTCTGGCG	NA	False	NA	NA	False	AATAAA	-23	NA	72892886	72923282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_72892956_72904683_72904753_72906305_72906427_72906744_72906822_72908958_72909158_72912922_72913175_72917578_72917695_72919211_72920609_72922613
transcript_96522.known	chr9	+	2877	8	FSM	ENSMUSG00000034563.17	ENSMUST00000124008.2	2877	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	63.542368960098	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAATGAGACTGCTTTC	NA	False	NA	NA	False	NA	NA	NA	72892900	72921213	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_72892956_72904683_72904753_72906305_72906427_72906744_72906822_72908958_72909158_72912936_72913175_72917578_72917695_72919211
transcript_96526.known	chr9	+	1612	7	FSM	ENSMUSG00000092192.8	ENSMUST00000098567.9	1612	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	7.58104361036277	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGTTACTCTGAAAACCTT	9178	False	NA	NA	False	AATAAA	-12	NA	72866066	72880343	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_72866280_72867863_72868012_72871372_72871519_72872450_72872561_72876313_72876468_72879254_72879361_72879608
transcript_96538.known	chr9	-	711	2	FSM	ENSMUSG00000086158.3	ENSMUST00000124565.3	711	2	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	0	369	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTTGTTTTTTTTTTT	NA	False	NA	1	True	AATAAA	-29	NA	72892658	72887003	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_72887479_72892422
transcript_96539.known	chr9	+	664	5	FSM	ENSMUSG00000034563.17	ENSMUST00000149551.2	664	5	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_3	14.396180048888	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCCTGGCCTTTATGGCT	NA	False	NA	NA	False	GATAAA	-14	NA	72892889	72909289	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_72892956_72904683_72904753_72906305_72906427_72906744_72906822_72908958
transcript_96540.known	chr9	+	496	2	FSM	ENSMUSG00000098332.3	ENSMUST00000184126.3	496	2	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_1	0	3482	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAAGTTATTTATAAAGGT	NA	False	NA	NA	False	AATAAA	-19	NA	72946999	72950061	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_72947148_72949713
transcript_96541.known	chr9	+	2979	6	FSM	ENSMUSG00000032202.12	ENSMUST00000034722.5	2979	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	3.86781592116274	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAAAAATAATAAAA	NA	False	NA	NA	False	ATTAAA	-11	NA	72952138	73004874	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_72952294_72982674_72982850_72989683_72989770_72992212_72992317_72994358_72994483_73002539
transcript_96542.known	chr9	+	841	6	FSM	ENSMUSG00000032215.16	ENSMUST00000169399.8	841	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	360.437178992401	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGACTTTTTTTTTGTT	8558	False	NA	133	True	NA	NA	NA	73020707	73029994	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_73020763_73022169_73022284_73023688_73023762_73025163_73025228_73028483_73028570_73029545
transcript_96544.known	chr9	+	1228	4	FSM	ENSMUSG00000092622.9	ENSMUST00000173734.9	1228	4	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	87.8116671569837	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCCAGGTGTGTATTTGA	NA	False	NA	26	True	AATAAA	-13	NA	73009679	73011720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_73009958_73010111_73010292_73010497_73011172_73011624
transcript_96546.known	chr9	+	1681	3	FSM	ENSMUSG00000092622.9	ENSMUST00000034737.13	1681	3	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_2	18.5	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCCAGGTGTGTATTTGA	NA	False	NA	26	True	AATAAA	-13	NA	73009679	73011720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_73009958_73010111_73010292_73010497
transcript_96549.known	chr9	+	1543	6	FSM	ENSMUSG00000032215.16	ENSMUST00000034738.14	1543	6	0	0	0	0	multi-exon	FALSE	canonical	3	633	junction_5	127.855230632149	1379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTACATATCTCTTATTT	8580	False	NA	13	True	AATAAA	-18	NA	73020729	73030615	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_73020866_73022169_73022284_73023688_73023762_73025163_73025228_73028483_73028570_73029545
transcript_96550.known	chr9	+	734	6	FSM	ENSMUSG00000032215.16	ENSMUST00000113505.4	734	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	360.815188150388	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAACTGTGGGCATAAAAT	8635	False	NA	-10	True	NA	NA	NA	73020784	73029851	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_73020866_73022159_73022284_73023688_73023762_73025163_73025228_73028483_73028570_73029545
transcript_96551.known	chr9	+	439	3	FSM	ENSMUSG00000034858.17	ENSMUST00000215355.2	439	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGTAGCCATTTGCATT	NA	False	NA	NA	False	GATAAA	-7	NA	74860307	74861478	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_74860342_74860995_74861113_74861190
transcript_96552.known	chr9	+	2018	3	FSM	ENSMUSG00000034858.17	ENSMUST00000216809.2	2018	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTCACTGTTTGTCTTGG	NA	False	NA	NA	False	AATAAA	-16	NA	74860165	74862966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_74860291_74860995_74861113_74861190
transcript_96555.known	chr9	+	216	2	FSM	ENSMUSG00000007656.14	ENSMUST00000169188.2	216	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAGAGCTGAACTGCATG	NA	False	NA	9	True	NA	NA	NA	74945198	74964087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_74945244_74963916
transcript_96556.known	chr9	+	429	4	FSM	ENSMUSG00000007656.14	ENSMUST00000170308.8	429	4	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_1	2500.61556865949	16849	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTATTTCTCTGACTACG	NA	False	NA	42	True	ATTAAA	-29	NA	74944958	74964120	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_74945006_74945188_74945244_74959514_74959638_74963916
transcript_96557.known	chr9	+	610	2	FSM	ENSMUSG00000007656.14	ENSMUST00000169448.2	610	2	0	0	0	0	multi-exon	FALSE	canonical	3	3551	junction_1	0	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74944958	74945755	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_74945002_74945188
transcript_96558.known	chr9	+	1047	5	FSM	ENSMUSG00000007656.14	ENSMUST00000164467.8	1047	5	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_4	2415.60255164214	6541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCTACAGAGTTAAGCTTT	NA	False	NA	NA	False	AATATA	-7	NA	74944960	74964992	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_74945002_74945188_74945244_74959514_74959638_74963916_74964199_74964446
transcript_96559.known	chr9	+	599	3	FSM	ENSMUSG00000007656.14	ENSMUST00000168301.2	599	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2907	1293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGAGACTGACAGCTTTG	NA	False	NA	97	True	NA	NA	NA	74945030	74964175	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_74945248_74959514_74959638_74963916
transcript_9656.known	chr10	-	2724	8	FSM	ENSMUSG00000052681.9	ENSMUST00000064667.9	2724	8	0	0	0	0	multi-exon	FALSE	canonical	3	789	junction_2	110.417205107146	467	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGACGGTCGTACTCGTTA	8605	False	NA	-10	True	ATTAAA	-12	NA	117681940	117649775	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_117651686_117653248_117653366_117654370_117654515_117656366_117656508_117657494_117657552_117658705_117658775_117660498_117660580_117681735
transcript_96566.known	chr9	+	2105	11	FSM	ENSMUSG00000032192.10	ENSMUST00000215875.2	2105	11	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_6	3.38230690505755	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCCAAGGGGTATCTTGTC	375	False	NA	1	True	NA	NA	NA	75221417	75253153	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_75221666_75234414_75234552_75239154_75239197_75240090_75240168_75241450_75241584_75242932_75243077_75244552_75244645_75247469_75247519_75250789_75250887_75251762_75251930_75252234
transcript_96570.known	chr9	-	1377	2	FSM	ENSMUSG00000111348.2	ENSMUST00000216737.2	1377	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGGGTTGTCATGGGACT	NA	False	NA	NA	False	NA	NA	NA	75222153	75217616	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_75218186_75221345
transcript_96571.known	chr9	+	1237	2	FSM	ENSMUSG00000032191.7	ENSMUST00000034709.7	1237	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATGTCTTTCTATAACT	NA	False	NA	NA	False	AATAAA	-33	NA	75255039	75258931	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_75255638_75258292
transcript_96572.known	chr9	-	4072	6	FSM	ENSMUSG00000042688.17	ENSMUST00000049355.11	4072	6	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_5	19.2727787306346	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTCACTGCTCAGTCTT	NA	False	NA	-48	True	AATAAA	-16	NA	75317287	75294185	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_75296430_75297448_75297651_75300646_75300812_75302791_75302937_75304860_75306034_75317144
transcript_96577.known	chr9	-	471	2	FSM	ENSMUSG00000042688.17	ENSMUST00000172665.2	471	2	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTTTAAATGTCTGCAG	NA	False	NA	NA	False	NA	NA	NA	75317267	75305693	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_75306034_75317136
transcript_96579.known	chr9	+	2180	12	FSM	ENSMUSG00000042487.7	ENSMUST00000048937.6	2180	12	0	0	0	0	multi-exon	FALSE	canonical	3	353	junction_2	48.4889013457617	1144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCCCTATGCTTAAGAAAAC	926	False	NA	5	True	AATAAA	-14	NA	75348817	75373714	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_75348918_75352516_75353276_75354383_75354489_75355583_75355679_75356638_75356785_75357769_75357855_75361905_75362001_75362922_75363058_75364339_75364476_75365356_75365544_75368287_75368386_75373475
transcript_96585.nnic	chr9	+	2608	5	NIC	ENSMUSG00000109032.2	novel	505	4	NA	NA	-59	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	17.0953209972788	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTTTATGTGTGTGCATT	NA	False	NA	16	True	AATAAA	-21	NA	75375838	75393963	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_75375966_75386953_75387087_75388729_75388947_75390380_75390480_75391931
transcript_96586.nnic	chr9	+	2510	4	NIC	ENSMUSG00000109032.2	novel	505	4	NA	NA	-94	0	combination_of_known_splicesites	FALSE	canonical	3	39	junction_1	3.2659863237109	71	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTTTATGTGTGTGCATT	NA	False	NA	16	True	AATAAA	-21	NA	75375803	75393963	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_75375966_75388729_75388947_75390380_75390480_75391931
transcript_96589.nnic	chr9	+	467	3	NNC	ENSMUSG00000109032.2	novel	1137	9	NA	NA	-91	-8600	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	4.5	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTAGTTTATCTGTCATGA	NA	False	NA	NA	False	AATAAA	-20	NA	75375806	75380298	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_75375966_75379458_75379554_75380085
transcript_96594.known	chr9	-	129	1	FSM	ENSMUSG00000111228.2	ENSMUST00000215151.2	129	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGACAGCTACAGTGTAC	NA	False	NA	NA	False	NA	NA	NA	75427784	75427655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_75427700_75427800
transcript_96595.known	chr9	-	3667	10	FSM	ENSMUSG00000058587.10	ENSMUST00000072232.9	3667	10	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_2	36.4461381720248	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAGCTGTATGCCACATTA	NA	False	NA	71	True	AATAAA	-30	NA	75466939	75404988	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_75407433_75412121_75412267_75414662_75414807_75416595_75416704_75418407_75418539_75422448_75422539_75423754_75423878_75436650_75436808_75439707_75439875_75466781
transcript_96596.known	chr9	-	898	4	FSM	ENSMUSG00000058587.10	ENSMUST00000215821.2	898	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	245.142588892442	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTGGATTAATTTTGGTA	NA	False	NA	NA	False	NA	NA	NA	75466876	75428181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_75428661_75436650_75436808_75439707_75439875_75466781
transcript_96598.known	chr9	-	9871	10	FSM	ENSMUSG00000032186.16	ENSMUST00000098552.10	9871	10	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_9	3.42467444609388	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTGGTTCCTGGCTACTC	NA	False	NA	2	True	AATAAA	-19	NA	75518585	75472902	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_75481406_75483927_75484073_75484390_75484535_75489111_75489220_75493329_75493461_75495171_75495259_75499844_75499968_75502202_75502360_75504491_75504685_75518305
transcript_96603.known	chr9	-	1564	7	FSM	ENSMUSG00000032186.16	ENSMUST00000215462.2	1564	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_6	3.4960294939005	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTCCTTTTATGCATT	NA	False	NA	NA	False	AATAAA	-14	NA	75518403	75488444	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_75489220_75493329_75493461_75495171_75495259_75499844_75499968_75502202_75502360_75504491_75504685_75518305
transcript_96604.known	chr9	+	1189	3	FSM	ENSMUSG00000032184.6	ENSMUST00000034702.6	1189	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	3	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTTCATTTCTCTTATT	NA	False	NA	7	True	AATAAA	-17	NA	75533022	75545053	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_75533320_75542667_75543000_75544493
transcript_96605.known	chr9	+	1241	3	FSM	ENSMUSG00000032184.6	ENSMUST00000213292.2	1241	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	30.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGGAGCCTTCATTTCTC	NA	False	NA	2	True	AATAAA	-12	NA	75533519	75545048	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_75533874_75542667_75543000_75544493
transcript_96606.known	chr9	-	2384	12	FSM	ENSMUSG00000032181.8	ENSMUST00000034699.8	2384	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	2.00412797136805	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAAATGCTTGCATAATAC	7794	False	NA	NA	False	TATAAA	-35	NA	75591338	75550470	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_75551227_75558912_75558994_75568534_75568673_75570474_75570559_75572935_75573053_75576496_75576675_75582626_75582777_75583950_75584094_75589245_75589462_75589555_75589602_75590219_75590273_75590916
transcript_96607.known	chr9	-	2152	12	FSM	ENSMUSG00000032181.8	ENSMUST00000213324.2	2152	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	1.99171839092788	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTGAGAAACAGCTGCTT	7835	False	NA	-8	True	AATAAA	-25	NA	75591297	75550646	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_75551227_75558912_75558994_75568534_75568673_75570489_75570559_75572935_75573053_75576496_75576675_75582626_75582777_75583950_75584094_75589245_75589462_75589555_75589602_75590219_75590273_75590916
transcript_96609.nnic	chr9	+	687	3	NNC	ENSMUSG00000098894.2	novel	581	2	NA	NA	-7173	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	3	171	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGCAGACTTGACAGTGA	NA	False	NA	NA	False	AATAAA	-22	NA	76219685	76228128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_76219851_76226917_76227020_76227708
transcript_9661.known	chr10	+	3074	14	FSM	ENSMUSG00000020212.15	ENSMUST00000020437.13	3074	14	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_4	15.3152281412244	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGATGCTTCTGTTTTC	NA	False	NA	11	True	ATTAAA	-14	NA	117977736	118004902	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_117977868_117978754_117978870_117982499_117982877_117983885_117984021_117986693_117986862_117987906_117988002_117988079_117988180_117993099_117993276_117994206_117994510_117995351_117995462_117995564_117995675_118000105_118000353_118002529_118002590_118003955
transcript_96610.nnic	chr9	+	1155	3	NNC	ENSMUSG00000098894.2	novel	581	2	NA	NA	-7173	468	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	3	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTGAAGGTTTATAACTAT	NA	False	NA	NA	False	AATAAA	-14	NA	76219685	76228596	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_76219851_76226917_76227020_76227708
transcript_96614.nnic	chr9	+	672	3	NNC	ENSMUSG00000098894.2	novel	581	2	NA	NA	-5435	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	4	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGCAGACTTGACAGTGA	NA	False	NA	NA	False	AATAAA	-22	NA	76221423	76228128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_76221574_76226917_76227020_76227708
transcript_96615.nnic	chr9	+	1140	3	NNC	ENSMUSG00000098894.2	novel	581	2	NA	NA	-5435	468	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	4	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTGAAGGTTTATAACTAT	NA	False	NA	NA	False	AATAAA	-14	NA	76221423	76228596	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_76221574_76226917_76227020_76227708
transcript_96618.known	chr9	+	3423	16	FSM	ENSMUSG00000032350.10	ENSMUST00000034905.9	3423	16	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	20.3437131976114	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAGTACGTGTATGAGTGG	4420	False	NA	18	True	AATAAA	-45	NA	77661816	77701767	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_77662242_77682360_77682474_77683407_77683591_77686803_77686918_77688365_77688425_77688515_77688650_77692615_77692691_77693031_77693149_77693992_77694132_77694558_77694672_77695088_77695182_77695469_77695575_77698996_77699079_77699161_77699266_77699334_77699456_77700321
transcript_96621.known	chr9	+	2782	8	FSM	ENSMUSG00000032349.14	ENSMUST00000034904.14	2782	8	0	0	0	0	multi-exon	FALSE	canonical	3	515	junction_6	44.3764048354804	339	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTCTTCTGTTGTTTG	NA	False	NA	11	True	ATTAAA	-19	NA	77824645	77891801	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_77824809_77864422_77864489_77868147_77868336_77883066_77883145_77884029_77884202_77887106_77887232_77888755_77888891_77889946
transcript_96625.known	chr9	-	2155	13	FSM	ENSMUSG00000001366.15	ENSMUST00000085311.13	2155	13	0	0	0	0	multi-exon	FALSE	non_canonical	2	34	junction_11	11.6437274482396	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGTGGATGGCCTTTAA	NA	False	NA	3	True	AATAAA	-31	NA	78015938	77988780	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_77989371_77991784_77991937_77993188_77993283_77993556_77993653_77994455_77994547_77994751_77994871_78002426_78002542_78003149_78003281_78005627_78005728_78007069_78007128_78008809_78008969_78011552_78011637_78015572
transcript_96627.nnic	chr9	-	1321	7	NNC	ENSMUSG00000001366.15	novel	2155	13	NA	NA	-3148	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	22.5511763674438	75	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGTGGATGGCCTTTAA	NA	False	NA	3	True	AATAAA	-31	NA	77998066	77988780	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_77989371_77991784_77991937_77993188_77993283_77993556_77993653_77994455_77994547_77994751_77994871_77997887
transcript_96628.nnic	chr9	-	1245	7	NNC	ENSMUSG00000001366.15	novel	2155	13	NA	NA	-3140	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_6	19.2563120964414	86	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGTGGATGGCCTTTAA	NA	False	NA	3	True	AATAAA	-31	NA	77998058	77988780	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_77989371_77991784_77991937_77993188_77993283_77993556_77993653_77994455_77994547_77994751_77994871_77997955
transcript_96629.known	chr9	-	1201	6	FSM	ENSMUSG00000001366.15	ENSMUST00000159099.8	1201	6	0	0	0	0	multi-exon	FALSE	non_canonical	2	34	junction_4	15.3961034031342	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATTTTTCATATTGATTT	NA	False	NA	NA	False	AATAAA	-15	NA	78015886	78002794	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_78003281_78005627_78005728_78007069_78007128_78008809_78008969_78011552_78011637_78015572
transcript_96632.known	chr9	-	1850	13	FSM	ENSMUSG00000001366.15	ENSMUST00000001402.14	1850	13	0	0	0	0	multi-exon	FALSE	non_canonical	2	18	junction_12	15.7920514464996	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATGTGTGGATGGCCTT	NA	False	NA	0	True	AATAAA	-28	NA	78016347	77988783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_77989371_77991784_77991937_77993188_77993283_77993556_77993653_77994455_77994547_77994751_77994871_78002426_78002542_78003149_78003281_78005627_78005728_78007069_78007128_78008809_78008969_78011552_78011637_78016283
transcript_96633.known	chr9	+	2540	14	FSM	ENSMUSG00000009828.16	ENSMUST00000118869.8	2540	14	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	29.6118879054586	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCGGGTCTCATTATTT	NA	False	NA	3	True	TATAAA	-14	NA	78016473	78075220	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_78016764_78038576_78038854_78042877_78042933_78047257_78047380_78048475_78048556_78057810_78057944_78060846_78061019_78062630_78062799_78064922_78065235_78067650_78067842_78067944_78068094_78071812_78071942_78074191_78074315_78074881
transcript_96634.known	chr9	+	6560	14	FSM	ENSMUSG00000009828.16	ENSMUST00000044551.8	6560	14	0	0	0	0	multi-exon	FALSE	canonical	2	83	junction_12	10.9192842819834	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATTGACTAGAATTTTT	NA	False	NA	NA	False	AATAAA	-13	NA	78020596	78079389	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_78020738_78038576_78038854_78042877_78042933_78047257_78047380_78048475_78048556_78057810_78057944_78060846_78061019_78062630_78062799_78064922_78065235_78067650_78067842_78067944_78068094_78071812_78071942_78074191_78074315_78074881
transcript_96639.known	chr9	+	873	2	FSM	ENSMUSG00000009828.16	ENSMUST00000009972.6	873	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	78020565	78032938	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_78020738_78032237
transcript_9664.known	chr10	+	2022	14	FSM	ENSMUSG00000020212.15	ENSMUST00000169817.3	2022	14	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_6	36.5594271833727	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCTCATCTTATCTAGTG	NA	False	NA	NA	False	AAGAAA	-26	NA	117977849	118004068	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_117977868_117978754_117978870_117982499_117982877_117986693_117986862_117987906_117988002_117988079_117988180_117992738_117992769_117993099_117993276_117994206_117994510_117995351_117995462_117995564_117995675_118000105_118000353_118002529_118002590_118003955
transcript_96640.known	chr9	-	331	1	FSM	ENSMUSG00002076161.1	ENSMUST00020183253.1	331	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTCCTGCAATTTAAT	NA	False	NA	-1	True	NA	NA	NA	78082915	78082584	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_78082600_78082900
transcript_96641.known	chr9	+	1444	4	FSM	ENSMUSG00000097574.3	ENSMUST00000180974.2	1444	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0.471404520791032	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCCTTGGGATTTCTTTT	NA	False	NA	3	True	AATAAA	-14	NA	78083195	78086161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_78083318_78083852_78084025_78084280_78084376_78085106
transcript_96655.known	chr9	+	977	7	FSM	ENSMUSG00000032348.7	ENSMUST00000034903.7	977	7	0	0	0	0	multi-exon	FALSE	canonical	3	2717	junction_1	326.320735201155	39093	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGTTGGAGAGGTGTTT	NA	False	NA	17	True	ATTAAA	-16	NA	78099228	78116631	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_78099347_78105551_78105659_78106771_78106824_78111513_78111647_78113193_78113336_78115082_78115215_78116338
transcript_96656.nic	chr9	+	915	6	ISM	ENSMUSG00000074183.4	ENSMUST00000098537.4	875	7	1447	0	1447	0	3prime_fragment	FALSE	canonical	1	1	junction_4	9.65401470891774	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTCCTCATAAGTTCTA	NA	False	NA	NA	False	AATAAA	-17	NA	78139384	78149966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_78139609_78142365_78142418_78143211_78143345_78146766_78146909_78148808_78148941_78149734
transcript_9666.known	chr10	+	2922	13	FSM	ENSMUSG00000020212.15	ENSMUST00000164077.9	2922	13	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_12	29.3295452099452	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGATGCTTCTGTTTTC	NA	False	NA	11	True	ATTAAA	-14	NA	117977828	118004902	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_117977868_117978754_117978870_117982499_117982877_117983885_117984021_117986693_117986862_117987906_117988002_117988079_117988180_117993099_117993276_117994206_117994510_117995351_117995462_117995564_117995675_118000105_118000353_118003955
transcript_96679.nnic	chr9	+	1178	6	Fusion	ENSMUSG00000110919.2_ENSMUSG00000111423.2	novel	348	3	NA	NA	-64	463	multi-exon	FALSE	non_canonical	0	0	junction_3	16442.1253614002	1101	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGTCGTCATTAAAATA	NA	False	NA	NA	False	AATAAA	-24	NA	78152767	78180328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr9_+_78152947_78153027_78153212_78153639_78153851_78179219_78179397_78179475_78179660_78180085
transcript_96684.nnic	chr9	+	1191	6	Fusion	ENSMUSG00000110919.2_ENSMUSG00000111423.2	novel	348	3	NA	NA	-64	463	multi-exon	FALSE	non_canonical	0	0	junction_3	16442.1253614002	933	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGTCGTCATTAAAATA	NA	False	NA	NA	False	AATAAA	-24	NA	78152767	78180328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr9_+_78152947_78153027_78153212_78153639_78153864_78179219_78179397_78179475_78179660_78180085
transcript_96693.nnic	chr9	+	1297	6	Fusion	ENSMUSG00000110919.2_ENSMUSG00000111423.2	novel	348	3	NA	NA	-64	463	multi-exon	FALSE	non_canonical	0	0	junction_3	16442.1253614002	1067	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGTCGTCATTAAAATA	NA	False	NA	NA	False	AATAAA	-24	NA	78152767	78180328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr9_+_78152947_78153027_78153212_78153639_78153915_78179164_78179397_78179475_78179660_78180085
transcript_96694.nnic	chr9	+	1269	6	Fusion	ENSMUSG00000110919.2_ENSMUSG00000111423.2	novel	348	3	NA	NA	-64	463	multi-exon	FALSE	non_canonical	0	0	junction_3	16442.1253614002	795	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGTCGTCATTAAAATA	NA	False	NA	NA	False	AATAAA	-24	NA	78152767	78180328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Fusion_chr9_+_78152947_78153027_78153212_78153639_78153915_78179192_78179397_78179475_78179660_78180085
transcript_9670.known	chr10	-	541	2	FSM	ENSMUSG00000112684.2	ENSMUST00000219046.2	541	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGTTATGATTACACTAAC	NA	False	NA	NA	False	NA	NA	NA	118001067	117999889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_118000335_118000971
transcript_96708.known	chr9	+	873	7	FSM	ENSMUSG00000074179.12	ENSMUST00000121273.2	873	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	10.077477638554	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGCTCCTCATAAGTTCT	5195	False	NA	NA	False	AATAAA	-16	NA	78197209	78212806	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_78197285_78202065_78202175_78205380_78205433_78206218_78206352_78209967_78210110_78211653_78211786_78212576
transcript_96709.nic	chr9	+	967	7	ISM	ENSMUSG00000074179.12	ENSMUST00000119823.8	993	8	4024	1	4019	0	3prime_fragment	FALSE	canonical	1	2	junction_5	10.2794292967395	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGCTCCTCATAAGTTCT	3098	False	NA	NA	False	AATAAA	-16	NA	78201228	78212806	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_78201398_78202065_78202175_78205380_78205433_78206218_78206352_78209967_78210110_78211653_78211786_78212576
transcript_9671.known	chr10	-	7766	15	FSM	ENSMUSG00000020114.13	ENSMUST00000020315.13	7766	15	0	0	0	0	multi-exon	FALSE	canonical	3	515	junction_9	90.891306470073	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAATCCATGTTTTCCTTC	226	False	NA	-27	True	AATAAA	-24	NA	119075960	119035159	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_119039111_119042620_119042729_119043931_119044097_119044177_119044348_119045878_119045975_119046559_119048054_119048344_119048487_119049451_119049745_119051106_119051253_119052047_119052154_119052355_119052613_119053845_119053970_119055494_119055650_119063307_119063452_119075545
transcript_96710.known	chr9	-	1167	3	FSM	ENSMUSG00000066463.14	ENSMUST00000166056.9	1167	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGGACCATGTGTTTGAC	NA	False	NA	NA	False	AATAAA	-19	NA	78221298	78219285	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_78219592_78220186_78220358_78220608
transcript_96711.known	chr9	+	735	3	FSM	ENSMUSG00000038750.13	ENSMUST00000043734.12	735	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGGAGAATCTGGTCTGT	4626	False	NA	NA	False	AATAAA	-43	NA	78235311	78236902	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_78235547_78235803_78235975_78236573
transcript_96713.nic	chr9	-	1015	7	NIC	ENSMUSG00000057933.11	novel	870	7	NA	NA	-3949	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_6	12.0369800568452	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTCCTCATAAGTTCTA	NA	False	NA	1	True	AATAAA	-17	NA	78249983	78238299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_78238532_78239368_78239501_78241042_78241185_78244840_78244974_78245926_78245979_78249111_78249221_78249768
transcript_96715.known	chr9	-	870	7	FSM	ENSMUSG00000057933.11	ENSMUST00000034902.12	870	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_6	11.4260910006684	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTCCTCATAAGTTCTA	NA	False	NA	1	True	AATAAA	-17	NA	78254440	78238299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_78238532_78239368_78239501_78241042_78241185_78244840_78244974_78245926_78245979_78249111_78249221_78254370
transcript_96781.known	chr9	-	619	3	FSM	ENSMUSG00000060461.6	ENSMUST00000071991.6	619	3	0	0	0	0	multi-exon	FALSE	canonical	3	178157	junction_1	1580.5	1264338	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGTCGTCATTAAAATA	NA	False	NA	NA	False	AATAAA	-24	NA	78275459	78274333	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_78274577_78275002_78275186_78275266
transcript_9680.known	chr10	-	4554	13	FSM	ENSMUSG00000020228.12	ENSMUST00000020449.12	4554	13	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_7	7.32006375199925	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCAGTCTGTGGTTTTCT	NA	False	NA	-3	True	NA	NA	NA	119948892	119919512	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_119920879_119925312_119925781_119927513_119927658_119928388_119928594_119930131_119930192_119931005_119931097_119934086_119934242_119937302_119937445_119938674_119938850_119941063_119941943_119944790_119944961_119946737_119947134_119948589
transcript_9689.nic	chr10	-	665	2	ISM	ENSMUSG00000020228.12	ENSMUST00000154501.2	3095	12	-139	26114	-17	-26114	5prime_fragment	FALSE	canonical	3	65	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTACACCAAGGGAGCAG	NA	False	NA	NA	False	GATAAA	-5	NA	119948909	119946788	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_119947134_119948589
transcript_9690.known	chr10	-	3097	12	FSM	ENSMUSG00000020227.11	ENSMUST00000020448.11	3097	12	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_2	3.60440501847255	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTTTTGTTAACTCAGAA	NA	False	NA	NA	False	ATTAAA	-17	NA	120037564	119977552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_119979097_119981550_119981716_119981802_119981866_119982335_119982535_120000997_120001117_120002309_120002425_120006222_120006288_120012135_120012288_120013972_120014028_120014600_120014705_120018430_120018614_120037231
transcript_9692.known	chr10	-	1171	8	FSM	ENSMUSG00000020227.11	ENSMUST00000143100.2	1171	8	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_6	3.73073281634303	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGTACTGAAAGTCTCACTT	NA	False	NA	NA	False	AATAAA	-12	NA	120037492	120000880	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_120001117_120002309_120002425_120006222_120006288_120012135_120012288_120013972_120014028_120014600_120014705_120018430_120018614_120037231
transcript_96930.known	chr9	-	2138	3	FSM	ENSMUSG00000032346.8	ENSMUST00000034900.8	2138	3	0	0	0	0	multi-exon	FALSE	canonical	3	1945	junction_2	79.5	15250	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCAGATAAAGCTTTGCT	NA	False	NA	NA	False	NA	NA	NA	78286007	78283390	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_78284974_78285256_78285440_78285635
transcript_96951.known	chr9	-	4049	5	FSM	ENSMUSG00000032344.18	ENSMUST00000070742.14	4049	5	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_4	3.56195171219375	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATGTAGTTGAATGTATC	5273	False	NA	-8	True	AATAAA	-16	NA	78350486	78337807	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_78340550_78341594_78341698_78342722_78342966_78344584_78344805_78349745
transcript_96956.known	chr9	+	2366	12	FSM	ENSMUSG00000032342.14	ENSMUST00000034896.13	2366	12	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_9	10.2457409010559	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTTAGGTGATTTTACG	NA	False	NA	19	True	AATAAA	-18	NA	78355489	78381434	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_78355793_78356700_78356901_78356999_78357118_78360045_78360336_78364491_78364605_78364697_78364889_78365198_78365330_78368114_78368320_78368801_78368974_78372165_78372285_78377912_78378074_78381071
transcript_9697.known	chr10	+	904	7	FSM	ENSMUSG00000020225.11	ENSMUST00000020446.11	904	7	0	0	0	0	multi-exon	FALSE	canonical	3	514	junction_6	43.3628104870214	4043	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTCTTCTATAATT	NA	False	NA	31	True	ATTAAA	-43	NA	120044654	120060822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_120044848_120051445_120051555_120053408_120053515_120056655_120056690_120057910_120058029_120059741_120059788_120060524
transcript_96979.known	chr9	-	1794	8	FSM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	0	0	0	0	multi-exon	FALSE	canonical	3	9075	junction_7	2138.51814038008	232244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGGTCAATGCTGAAAGT	7100	False	NA	NA	False	ATTAAA	-22	NA	78389006	78385730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
transcript_97009.known	chr9	-	859	5	FSM	ENSMUSG00000037742.15	ENSMUST00000154207.8	859	5	0	0	0	0	multi-exon	FALSE	canonical	3	424	junction_4	5371.55305172536	1604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCAGGATGTCTATAAAAT	NA	False	NA	NA	False	NA	NA	NA	78396433	78386930	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78396355
transcript_97010.known	chr9	-	505	2	FSM	ENSMUSG00000037742.15	ENSMUST00000143570.2	505	2	0	0	0	0	multi-exon	FALSE	canonical	3	15744	junction_1	0	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAATGTTGCTTGCATAGC	9323	False	NA	NA	False	NA	NA	NA	78386783	78386193	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_78386475_78386559
transcript_97011.known	chr9	-	745	3	FSM	ENSMUSG00000037742.15	ENSMUST00000156988.2	745	3	0	0	0	0	multi-exon	FALSE	canonical	3	12130	junction_2	206	1307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTAGCATTTGTGCCAAT	7983	False	NA	NA	False	AAGAAA	-19	NA	78388123	78387196	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_78387431_78387522_78387703_78387792
transcript_97012.known	chr9	-	3236	11	FSM	ENSMUSG00000049624.15	ENSMUST00000052441.12	3236	11	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	5.61782876207526	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTATGTGTATGGTGTTT	NA	False	NA	-1	True	ATTAAA	-19	NA	78495323	78443769	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_78445582_78448180_78448272_78460215_78460364_78464738_78464872_78466292_78466452_78467969_78468089_78478303_78478391_78481931_78482020_78484311_78484546_78485792_78485990_78495155
transcript_97020.known	chr9	-	477	4	FSM	ENSMUSG00000032330.8	ENSMUST00000215933.2	477	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	3032.26365754841	3047	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTCTCCCTTTTCACT	NA	False	NA	-14	True	AATAAA	-16	NA	79666533	79662687	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_79662888_79663558_79663644_79665771_79665862_79666431
transcript_97026.known	chr9	-	659	4	FSM	ENSMUSG00000032330.8	ENSMUST00000034881.8	659	4	0	0	0	0	multi-exon	FALSE	canonical	3	5621	junction_3	439.918426781855	64396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGTCAGCAGTTGGCA	NA	False	NA	0	True	AATAAA	-16	NA	79667160	79662642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_79662888_79663558_79663644_79665771_79665862_79666921
transcript_97029.known	chr9	-	3658	7	FSM	ENSMUSG00000032328.13	ENSMUST00000034878.12	3658	7	0	0	0	0	multi-exon	FALSE	canonical	3	408	junction_2	27.5282682992511	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCGTGCTGTTTATGTGTC	NA	False	NA	-9	True	AATAAA	-14	NA	79700712	79676224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_79678762_79681374_79681585_79682383_79682534_79683434_79683523_79684505_79684614_79687822_79687931_79700255
transcript_97032.known	chr9	-	2662	6	FSM	ENSMUSG00000032328.13	ENSMUST00000153815.8	2662	6	0	0	0	0	multi-exon	FALSE	canonical	3	408	junction_1	22.8508205541945	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79700712	79679833	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_79681585_79682383_79682534_79683434_79683523_79684505_79684614_79687822_79687931_79700255
transcript_97036.known	chr9	+	1150	7	FSM	ENSMUSG00000034252.15	ENSMUST00000176640.8	1150	7	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	86.6572110226392	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATGTGGAAAAGAAAAAGA	NA	False	NA	4	True	NA	NA	NA	79974217	80021035	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_79974855_79999548_79999695_80000818_80000924_80006167_80006189_80010975_80011047_80018592_80018736_80021008
transcript_97037.nic	chr9	+	1106	9	ISM	ENSMUSG00000033577.19	ENSMUST00000184480.8	4139	36	-222	61498	-26	-20072	5prime_fragment	FALSE	canonical	3	64	junction_5	7.68114574786861	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGTTCTTCGTCCTAAAACT	4828	False	NA	NA	False	AATAAA	-21	NA	80072286	80153881	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_80072512_80124897_80125040_80128299_80128370_80133473_80133548_80136139_80136270_80149446_80149553_80152416_80152473_80152921_80153020_80153676
transcript_97040.known	chr9	+	1411	4	FSM	ENSMUSG00000097466.9	ENSMUST00000180663.8	1411	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTTTGTGCATATGTAT	NA	False	NA	NA	False	CATAAA	-22	NA	81514410	81527138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_81514534_81518887_81518991_81524599_81524756_81526109
transcript_97048.known	chr9	+	638	2	FSM	ENSMUSG00000079225.4	ENSMUST00000055820.7	638	2	0	0	0	0	multi-exon	FALSE	canonical	3	2455	junction_1	0	2462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAACT	NA	False	NA	NA	False	NA	NA	NA	81559650	81560730	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_81559913_81560354
transcript_97049.nnic	chr9	+	866	2	NNC	ENSMUSG00000079225.4	novel	638	2	NA	NA	-61	18	at_least_one_novel_splicesite	FALSE	canonical	3	2674	junction_1	0	3425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAAGGACTGAGTCTGTA	NA	False	NA	NA	False	NA	NA	NA	81559589	81560748	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_81560062_81560354
transcript_97052.known	chr9	+	775	1	FSM	ENSMUSG00000079225.4	ENSMUST00000183511.2	775	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATTGATGAAGAAGGAGAT	NA	False	NA	71	True	NA	NA	NA	81559664	81560439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_81559700_81560400
transcript_97053.known	chr9	+	2670	5	FSM	ENSMUSG00000043289.13	ENSMUST00000057067.10	2670	5	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	8.4372685153431	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAATAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	81745722	81909079	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_81745971_81772174_81772421_81809150_81809687_81861178_81861311_81907571
transcript_97055.nnic	chr9	+	1603	4	NIC	ENSMUSG00000043289.13	novel	2670	5	NA	NA	-37	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	20.757863302587	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTACTGGTTGAATTTT	NA	False	NA	NA	False	AATAAA	-18	NA	81745685	81908511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_81745971_81772174_81772421_81861178_81861311_81907571
transcript_97057.known	chr9	+	1817	4	FSM	ENSMUSG00000043289.13	ENSMUST00000189391.2	1817	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	20.6774165590278	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTACTGGTTGAATTTT	NA	False	NA	NA	False	AATAAA	-18	NA	81745761	81908511	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_81745971_81809150_81809687_81861178_81861311_81907571
transcript_97058.known	chr9	+	2158	4	FSM	ENSMUSG00000032251.13	ENSMUST00000113245.9	2158	4	0	0	0	0	multi-exon	TRUE	canonical	3	114	junction_3	13.589211407093	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGCGATGTTGATCTCTG	NA	False	NA	4	True	NA	NA	NA	82711592	82729740	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_82712393_82719470_82719537_82728351_82728483_82728579
transcript_97060.known	chr9	-	10756	40	FSM	ENSMUSG00000032253.14	ENSMUST00000034787.12	10756	40	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_28	10.5485322148115	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTGTCTACTTAGAACAG	NA	False	NA	NA	False	AATAAA	-17	NA	82857569	82748211	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_82753915_82757342_82757541_82758061_82758322_82758778_82758943_82759242_82759396_82762164_82762315_82763373_82763425_82763722_82763793_82766885_82767012_82768674_82768796_82769566_82769723_82772166_82772229_82772413_82772526_82775375_82775459_82775577_82775703_82776286_82776395_82778074_82778195_82782674_82782907_82785176_82785254_82787701_82787843_82788993_82789112_82790743_82790928_82791839_82791978_82795740_82795967_82797348_82797478_82808449_82808585_82809087_82809242_82810152_82810252_82810881_82810923_82811027_82811129_82812356_82812428_82814538_82814640_82814898_82815121_82827810_82827972_82841564_82841664_82841753_82841905_82856726_82856787_82856979_82857010_82857140_82857200_82857304
transcript_97062.known	chr9	-	2623	17	FSM	ENSMUSG00000032253.14	ENSMUST00000187021.7	2623	17	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_5	7.78219120813669	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-17	NA	82857479	82795131	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_82795967_82797348_82797478_82808449_82808585_82809087_82809242_82810152_82810252_82810881_82810923_82811027_82811129_82812356_82812428_82814538_82814640_82814898_82815121_82827810_82827972_82841564_82841664_82841753_82841905_82856726_82856787_82856979_82857010_82857140_82857200_82857304
transcript_97067.known	chr9	-	1979	7	FSM	ENSMUSG00000032253.14	ENSMUST00000188828.7	1979	7	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	5.67646212197547	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAATTTAAAAAAAGAGG	NA	False	NA	NA	False	AAGAAA	-14	NA	82857469	82826556	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_82827972_82841564_82841664_82841753_82841905_82856726_82856787_82856979_82857010_82857140_82857200_82857304
transcript_97070.known	chr9	-	983	6	FSM	ENSMUSG00000066456.15	ENSMUST00000162246.9	983	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	12.1556571192182	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATCCACCTGTTTGTG	NA	False	NA	-6	True	AATAAA	-18	NA	83028738	82992000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_82992483_82993045_82993160_82994272_82994324_82996825_82996856_83002425_83002477_83028483
transcript_97071.known	chr9	-	862	6	FSM	ENSMUSG00000066456.15	ENSMUST00000161796.9	862	6	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	6.24179461373089	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATCCACCTGTTTGTG	NA	False	NA	-6	True	AATAAA	-18	NA	83028658	82992000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_82992483_82993086_82993160_82994272_82994324_82996825_82996856_83002425_83002477_83028483
transcript_97074.known	chr9	-	1391	5	FSM	ENSMUSG00000066456.15	ENSMUST00000185315.7	1391	5	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_3	4.7169905660283	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATCCACCTGTTTGTG	NA	False	NA	-6	True	AATAAA	-18	NA	83028583	82992000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_82993160_82994272_82994324_82996825_82996856_83002425_83002477_83028483
transcript_97075.known	chr9	-	4160	8	FSM	ENSMUSG00000032258.16	ENSMUST00000034791.15	4160	8	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_7	8.75051018920774	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGATCCTTTATTTGAAT	NA	False	NA	-5	True	AATAAA	-14	NA	83323080	83275471	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_83278109_83280564_83280695_83281678_83281822_83282655_83282750_83283664_83283803_83305075_83305606_83308645_83309015_83322961
transcript_97076.nnic	chr9	+	510	2	Genic_Genomic	ENSMUSG00000058838.10	novel	467	1	NA	NA	-46	47	multi-exon	FALSE	canonical	3	305	junction_1	0	2237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATTACATTATTACATTAT	NA	False	NA	NA	False	AATAAA	-25	NA	83291666	83292226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr9_+_83291852_83291901
transcript_97077.nnic	chr9	+	471	2	Genic_Genomic	ENSMUSG00000058838.10	novel	467	1	NA	NA	-46	47	multi-exon	FALSE	canonical	0	0	junction_1	0	1642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATTACATTATTACATTAT	NA	False	NA	NA	False	AATAAA	-25	NA	83291666	83292226	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr9_+_83292087_83292175
transcript_97078.known	chr9	+	467	1	FSM	ENSMUSG00000058838.10	ENSMUST00000078766.10	467	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	44652	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTTGTGTATGCGTTAAT	NA	False	NA	NA	False	NA	NA	NA	83291712	83292179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_83291700_83292200
transcript_97079.known	chr9	-	1728	3	FSM	ENSMUSG00000032258.16	ENSMUST00000190373.2	1728	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	9	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAATCCCTT	NA	False	NA	NA	False	AGTAAA	-12	NA	83323146	83304299	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_83305606_83308645_83309015_83323093
transcript_97080.known	chr9	+	4565	4	FSM	ENSMUSG00000032261.17	ENSMUST00000113215.10	4565	4	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_2	12.4988888395018	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGTTTTATTTTTCCTTC	NA	False	NA	9	True	AATAAA	-16	NA	83430380	83483399	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_83430557_83459488_83459675_83476710_83476792_83479277
transcript_97084.known	chr9	-	3001	6	FSM	ENSMUSG00000032262.14	ENSMUST00000034796.14	3001	6	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_4	3.49857113690718	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTCCGTCGTTGATTTG	NA	False	NA	1	True	AATAAA	-26	NA	83688305	83660744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_83662863_83665188_83665317_83667087_83667260_83670321_83670403_83672029_83672218_83687991
transcript_97086.nnic	chr9	+	3045	23	NNC	ENSMUSG00000038379.16	novel	2871	22	NA	NA	-63	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	74.5741768391691	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTACAGTGGTCAGTTTCT	NA	False	NA	10	True	AATAAA	-21	NA	83716678	83754439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_83716813_83717823_83717978_83721252_83721467_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099_83726195_83726402_83726485_83727965_83728051_83729187_83729306_83732624_83732762_83735139_83735229_83736855_83736983_83739370_83739464_83744214_83744373_83744500_83744653_83745497_83745623_83747130_83747212_83750095_83750273_83750628_83750714_83751235_83751334_83754037
transcript_97087.known	chr9	+	2871	22	FSM	ENSMUSG00000038379.16	ENSMUST00000070326.14	2871	22	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_10	27.5493373131652	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTACAGTGGTCAGTTTCT	NA	False	NA	10	True	AATAAA	-21	NA	83716770	83754439	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_83716813_83717823_83717978_83721252_83721467_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099_83726195_83727965_83728051_83729187_83729306_83732624_83732762_83735139_83735229_83736855_83736983_83739370_83739464_83744214_83744373_83744500_83744653_83745497_83745623_83747130_83747212_83750095_83750273_83750628_83750714_83751235_83751334_83754037
transcript_97090.known	chr9	+	2711	21	FSM	ENSMUSG00000038379.16	ENSMUST00000188445.7	2711	21	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_10	27.9819584732735	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATGTCTCGACAACATT	NA	False	NA	0	True	AATAAA	-15	NA	83716741	83751546	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_83716813_83717823_83717978_83721252_83721467_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099_83726195_83727965_83728051_83729187_83729306_83732624_83732762_83735139_83735229_83736855_83736983_83739370_83739464_83744214_83744373_83744500_83744653_83745497_83745623_83747130_83747212_83750095_83750273_83750628_83750714_83751235
transcript_97097.nic	chr9	+	1909	8	ISM	ENSMUSG00000038379.16	ENSMUST00000186277.2	999	9	-115	-587	-63	587	intron_retention	FALSE	canonical	3	220	junction_5	14.2427926635594	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAACGTTAATTGGCTG	NA	False	NA	NA	False	NA	NA	NA	83716678	83727067	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_83716813_83717823_83717978_83721252_83721467_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099
transcript_971.nnic	chr1	+	1664	4	NNC	ENSMUSG00000067813.4	novel	1926	4	NA	NA	-2721	-274	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.816496580927726	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTATGTGTTGTTACTTA	NA	False	NA	NA	False	AGTAAA	-15	NA	13736273	13771673	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr1_+_13736383_13742349_13742989_13754279_13754501_13770978
transcript_97100.known	chr9	+	1791	2	FSM	ENSMUSG00000038379.16	ENSMUST00000189727.2	1791	2	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATTTAATGATGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	83716786	83719588	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_83716813_83717823
transcript_97104.known	chr9	+	1472	11	FSM	ENSMUSG00000032263.15	ENSMUST00000034801.11	1472	11	0	0	0	0	multi-exon	FALSE	canonical	3	595	junction_3	45.3898667105335	566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACTGTGTGTGTGTCCTCT	NA	False	NA	NA	False	AATAAA	-19	NA	83807202	84006292	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_83807413_83834576_83834655_83835765_83835835_83870828_83870963_83871193_83871350_83873766_83873876_83892306_83892405_83894561_83894673_83951157_83951245_84004286_84004436_84006021
transcript_97110.known	chr9	+	540	4	FSM	ENSMUSG00000032263.15	ENSMUST00000188200.7	540	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	313.434026373795	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACTGTGTGTGTGTCCTCT	2751	False	NA	NA	False	AATAAA	-19	NA	83927939	84006292	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_83927973_83951157_83951245_84004286_84004436_84006021
transcript_97111.known	chr9	+	798	1	FSM	ENSMUSG00000099927.2	ENSMUST00000190511.2	798	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14165	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGTACACTGAATTTTC	NA	False	NA	NA	False	AAAAAG	-33	NA	84306036	84306834	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_84306000_84306800
transcript_97115.known	chr9	-	5650	29	FSM	ENSMUSG00000035941.16	ENSMUST00000039213.15	5650	29	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_19	26.8952047922362	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTCTAGCGTGTGTTTG	NA	False	NA	-7	True	AATAAA	-16	NA	85631387	85569412	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_85570568_85572261_85572395_85572746_85572819_85579171_85579319_85585067_85585212_85585703_85585797_85588496_85588658_85590076_85590226_85592428_85592542_85595649_85595772_85596240_85596302_85597351_85597470_85599603_85599706_85600413_85600511_85600947_85600986_85601065_85601149_85601915_85602003_85602796_85603400_85604327_85604506_85606099_85606278_85608662_85608787_85610458_85610640_85610728_85610847_85613136_85613308_85614683_85614795_85617027_85617153_85619520_85619618_85625427_85626113_85631183
transcript_97116.known	chr9	-	760	1	FSM	ENSMUSG00000099980.2	ENSMUST00000071172.7	760	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTAAATGAATACTCCTAAG	NA	False	NA	NA	False	AAAAAG	-31	NA	85664680	85663920	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_85663900_85664700
transcript_97118.known	chr9	-	1790	10	FSM	ENSMUSG00000032415.15	ENSMUST00000034986.14	1790	10	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_5	4.12160822022031	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTCTTTTGTTCTTTAT	NA	False	NA	0	True	ATTAAA	-26	NA	86347003	86189358	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_86189930_86254393_86254533_86304893_86305058_86307314_86307424_86309420_86309491_86317336_86317407_86322638_86322808_86330815_86330907_86333866_86334064_86346793
transcript_97119.nic	chr9	-	1110	8	ISM	ENSMUSG00000032415.15	ENSMUST00000034986.14	1790	10	-12	115517	-12	-115081	5prime_fragment	FALSE	canonical	3	19	junction_3	4.4629998148038	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTTCCACGTTGCATT	NA	False	NA	NA	False	AATAAA	-21	NA	86347015	86304875	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_-_86305058_86307314_86307424_86309420_86309491_86317336_86317407_86322638_86322808_86330815_86330907_86333866_86334064_86346793
transcript_97123.known	chr9	-	472	1	FSM	ENSMUSG00000103731.2	ENSMUST00000194336.2	472	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTACAGCTACTGTAGAC	NA	False	NA	NA	False	AATAAA	-19	NA	86429206	86428734	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_86428700_86429200
transcript_97124.known	chr9	-	2666	13	FSM	ENSMUSG00000056131.14	ENSMUST00000070064.11	2666	13	0	0	0	0	multi-exon	FALSE	canonical	3	372	junction_7	43.7311070317483	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGCAGTGTGTTTTAAGT	NA	False	NA	NA	False	AAAAAG	-12	NA	86453880	86436429	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_86437457_86438244_86438419_86439555_86439679_86440447_86440562_86441467_86441567_86443873_86443958_86444588_86444747_86446729_86446926_86447650_86447785_86449561_86449630_86451263_86451449_86452254_86452461_86453782
transcript_97125.known	chr9	-	1920	12	FSM	ENSMUSG00000056131.14	ENSMUST00000072585.8	1920	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	140.019065998082	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCTTTCGATTGCTTACC	NA	False	NA	-2	True	ATTAAA	-20	NA	86453881	86437053	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_86437457_86438244_86438419_86440447_86440562_86441467_86441567_86443873_86443958_86444588_86444747_86446729_86446926_86447650_86447785_86449561_86449630_86451263_86451449_86452254_86452461_86453782
transcript_97126.known	chr9	-	2116	12	FSM	ENSMUSG00000056131.14	ENSMUST00000186193.7	2116	12	0	0	0	0	multi-exon	FALSE	canonical	3	372	junction_6	45.4649079097238	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATGGCAATGACTATGTG	NA	False	NA	NA	False	GATAAA	-12	NA	86453846	86437733	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_86438419_86439555_86439679_86440447_86440562_86441467_86441567_86443873_86443958_86444588_86444747_86446729_86446926_86447650_86447785_86449561_86449630_86451263_86451449_86452254_86452461_86453782
transcript_97127.known	chr9	+	1355	3	FSM	ENSMUSG00000032417.11	ENSMUST00000034988.10	1355	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	22.5	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAACTTGTCTCAAGTCCAA	NA	False	NA	6	True	AATAAA	-19	NA	86454068	86456952	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_86454271_86454889_86455117_86456026
transcript_97128.known	chr9	+	1130	3	FSM	ENSMUSG00000032417.11	ENSMUST00000179212.3	1130	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	25.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTCACACTTGATTACC	NA	False	NA	-53	True	NA	NA	NA	86454105	86456893	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_86454142_86454889_86455117_86456026
transcript_97129.known	chr9	+	1054	3	FSM	ENSMUSG00000032417.11	ENSMUST00000185566.7	1054	3	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	7	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTCTGGGTGAAAAACC	NA	False	NA	NA	False	AATAAA	-18	NA	86454043	86456786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_86454111_86454889_86455117_86456026
transcript_97130.known	chr9	-	3288	14	FSM	ENSMUSG00000032418.16	ENSMUST00000034989.15	3288	14	0	0	0	0	multi-exon	TRUE	canonical	3	250	junction_5	30.9913139195733	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCGTAAATGTCATTTTTT	9610	False	NA	NA	False	ATTAAA	-20	NA	86578006	86463423	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_86464961_86469015_86469115_86476496_86476671_86478108_86478252_86480771_86480878_86493905_86494020_86495593_86495692_86501777_86501888_86528363_86528468_86532920_86533083_86536695_86536772_86559916_86560067_86561871_86562006_86577725
transcript_97132.nnic	chr9	-	1818	3	NNC	ENSMUSG00000032418.16	novel	3288	14	NA	NA	31029	0	at_least_one_novel_splicesite	FALSE	canonical	2	22	junction_2	172.5	101	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCGTAAATGTCATTTTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	86469728	86463423	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_86464961_86469015_86469115_86469546
transcript_97136.known	chr9	+	1825	3	FSM	ENSMUSG00000087466.4	ENSMUST00000150367.4	1825	3	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	2	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAGGCAGAATATTTTCT	5519	False	NA	NA	False	ATTAAA	-26	NA	86577512	86583306	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_86577756_86581135_86581202_86581790
transcript_97137.known	chr9	+	3444	2	FSM	ENSMUSG00000033491.14	ENSMUST00000036426.13	3444	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTTACTGTGTTTGTATA	NA	False	NA	4	True	AATAAA	-19	NA	86625701	86640496	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_86625860_86637210
transcript_9714.known	chr10	+	593	3	FSM	ENSMUSG00000020225.11	ENSMUST00000145015.8	593	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACCCCTAGATAAGTCTCA	NA	False	NA	NA	False	AATAAA	-32	NA	120037516	120039113	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_120037755_120038006_120038101_120038852
transcript_97141.nnic	chr9	-	2075	8	NIC	ENSMUSG00000033419.17	novel	4336	30	NA	NA	-18	4	combination_of_known_splicesites	FALSE	canonical	2	5	junction_3	8.54758588665805	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAAACGTAATCTTTCTGT	NA	False	NA	NA	False	AATAAA	-19	NA	86680944	86647981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_86649390_86655571_86655677_86656249_86656334_86657644_86657745_86659086_86659118_86663622_86663773_86665352_86665488_86680882
transcript_97146.known	chr9	+	2644	16	FSM	ENSMUSG00000032872.17	ENSMUST00000168529.9	2644	16	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_12	173.734612428139	389	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGGGACTAGGTGTGTTT	NA	False	NA	NA	False	AATAAA	-27	NA	86904066	86959827	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_86904307_86908999_86909154_86911556_86911658_86914432_86914515_86920778_86920809_86922434_86922520_86923305_86923364_86924832_86924927_86929526_86929560_86931154_86931278_86937817_86937959_86939194_86939348_86940977_86941129_86941417_86941505_86948701_86948867_86958880
transcript_9715.known	chr10	+	360	3	FSM	ENSMUSG00000020225.11	ENSMUST00000156877.8	360	3	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	312	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCACAGACACACGCATCCT	NA	False	NA	NA	False	NA	NA	NA	120037562	120053467	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_120037755_120051445_120051555_120053408
transcript_9717.known	chr10	+	486	3	FSM	ENSMUSG00000020225.11	ENSMUST00000134797.8	486	3	0	0	0	0	multi-exon	FALSE	canonical	3	595	junction_1	20.5	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTGCTTGTCTGTGCTTT	NA	False	NA	NA	False	AATAAA	-16	NA	120044684	120053622	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_120044848_120051445_120051555_120053408
transcript_97170.known	chr9	-	7685	27	FSM	ENSMUSG00000056919.10	ENSMUST00000093802.6	7685	27	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_14	9.30228705097291	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGGAGTTTTGTGTTTAT	NA	False	NA	NA	False	AATACA	-18	NA	87137589	87071629	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_87074976_87075625_87075761_87082033_87082133_87083750_87083893_87085693_87086338_87088895_87089109_87092849_87092955_87093709_87093874_87094904_87095032_87099120_87099227_87100557_87100671_87102503_87102645_87103150_87103379_87104096_87104228_87107731_87107994_87109206_87109481_87113430_87113513_87114031_87114224_87119885_87120003_87120406_87120438_87121867_87121987_87126330_87126399_87128201_87128386_87128668_87128816_87130427_87130552_87135984_87136102_87137315
transcript_97172.nic	chr9	-	1508	6	ISM	ENSMUSG00000056919.10	ENSMUST00000144137.2	3131	12	-253	17968	-5	-17968	5prime_fragment	FALSE	canonical	3	55	junction_2	7.17216843081644	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGGTTTGATCTAGCTG	NA	False	NA	NA	False	NA	NA	NA	87137594	87125741	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_-_87126399_87128201_87128386_87128668_87128816_87130427_87130552_87135984_87136102_87137315
transcript_97175.known	chr9	-	3082	29	FSM	ENSMUSG00000032422.19	ENSMUST00000174806.9	3082	29	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_14	53.7773542165344	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTTAGGTATTACGGCC	NA	False	NA	-19	True	AATAAA	-23	NA	88320967	88258819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88258993_88261562_88261620_88262222_88262315_88263534_88263631_88263772_88263938_88264130_88264255_88265811_88265932_88266022_88266064_88267772_88267885_88269263_88269365_88273814_88273899_88276419_88276622_88280291_88280425_88282775_88282803_88283972_88284032_88284196_88284322_88285317_88285474_88286356_88286472_88286563_88286645_88286751_88286797_88287292_88287369_88289378_88289536_88292610_88292696_88295533_88295622_88297724_88297769_88302303_88302383_88302801_88302879_88304950_88305072_88320720
transcript_97176.known	chr9	-	3109	28	FSM	ENSMUSG00000032422.19	ENSMUST00000165315.9	3109	28	0	0	0	0	multi-exon	TRUE	canonical	3	141	junction_13	28.9754164757839	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTTGTATTTACTGTCT	NA	False	NA	-2	True	AATAAA	-40	NA	88321004	88258802	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88258993_88261562_88261620_88262222_88262315_88263534_88263631_88263772_88263938_88264130_88264255_88265811_88265932_88266022_88266064_88267772_88267885_88269263_88269365_88273814_88273899_88276419_88276622_88280291_88280425_88283972_88284032_88284196_88284322_88285317_88285474_88286356_88286472_88286563_88286645_88286751_88286797_88287292_88287369_88289378_88289536_88292610_88292696_88295533_88295622_88297724_88297769_88302303_88302383_88302801_88302879_88304950_88305072_88320720
transcript_97178.known	chr9	-	2970	26	FSM	ENSMUSG00000032422.19	ENSMUST00000173039.9	2970	26	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_22	44.6220393975892	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAGGTATTACGGCCTTT	NA	False	NA	-16	True	AATAAA	-26	NA	88321011	88258816	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88258993_88261562_88261620_88262222_88262315_88263534_88263631_88263772_88263938_88264130_88264255_88265811_88265932_88266022_88266064_88267772_88267885_88269263_88269365_88273814_88273899_88276419_88276622_88280291_88280425_88283972_88284032_88284196_88284322_88285317_88285474_88286356_88286472_88286563_88286645_88286751_88286797_88287292_88287369_88289378_88289536_88292610_88292696_88302303_88302383_88302801_88302879_88304950_88305072_88320720
transcript_97182.known	chr9	-	3404	12	FSM	ENSMUSG00000032423.13	ENSMUST00000174282.8	3404	12	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_1	221.053263840518	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAGGCGAGTGTAACTT	NA	False	NA	-15	True	AATAAA	-18	NA	88364249	88334741	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88336346_88338415_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
transcript_97184.known	chr9	-	6257	11	FSM	ENSMUSG00000032423.13	ENSMUST00000174391.8	6257	11	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_10	258.93213396564	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCAGGAGTCCAAGAATT	NA	False	NA	-16	True	AATAAA	-28	NA	88364301	88331783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88336349_88338415_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88364108
transcript_97186.known	chr9	-	2944	11	FSM	ENSMUSG00000032423.13	ENSMUST00000173801.8	2944	11	0	0	0	0	multi-exon	FALSE	canonical	3	754	junction_4	62.6802201655355	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTTTACAATTCGTTTT	NA	False	NA	NA	False	AATAAA	-34	NA	88364608	88337630	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
transcript_97195.known	chr9	+	481	1	FSM	ENSMUSG00000066443.6	ENSMUST00000155008.2	481	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	47402	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATGTACACAAAGAAATAAA	NA	False	NA	NA	False	NA	NA	NA	88272889	88273370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_88272900_88273400
transcript_97196.known	chr9	-	1925	11	FSM	ENSMUSG00000032423.13	ENSMUST00000172828.8	1925	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	353.000906514417	696	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTAAGTAGATTTTTCC	NA	False	NA	-1	True	AATAAA	-28	NA	88364202	88335990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88336349_88338415_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359152_88359241_88361623_88361732_88361846_88361966_88364108
transcript_97197.known	chr9	-	1075	4	FSM	ENSMUSG00000032422.19	ENSMUST00000126563.3	1075	4	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_3	23.3380947522857	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCAACTGTCTGTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	88320965	88301750	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88302383_88302801_88302879_88304950_88305072_88320720
transcript_9720.known	chr10	+	647	3	FSM	ENSMUSG00000020225.11	ENSMUST00000123802.7	647	3	0	0	0	0	multi-exon	FALSE	canonical	3	514	junction_2	3.5	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTCTTCTATAATT	NA	False	NA	31	True	ATTAAA	-43	NA	120057725	120060822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_120058029_120059741_120059788_120060524
transcript_97200.known	chr9	-	1678	5	FSM	ENSMUSG00000097195.11	ENSMUST00000239369.2	1678	5	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_2	300.420122495148	2222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTCAATTCTTTTTGTG	NA	False	NA	-7	True	AATAAA	-40	NA	88405615	88403102	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359_88404435_88404536
transcript_97202.known	chr9	-	913	4	FSM	ENSMUSG00000097195.11	ENSMUST00000239377.2	913	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	338.103534438787	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTCAATTGCAAATATTTA	NA	False	NA	-23	True	AATAAA	-24	NA	88404941	88403118	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404536
transcript_97208.known	chr9	-	442	2	FSM	ENSMUSG00000097195.11	ENSMUST00000182517.3	442	2	0	0	0	0	multi-exon	FALSE	canonical	3	461	junction_1	0	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTATTCAATTCTTT	NA	False	NA	-12	True	AATAAA	-35	NA	88404018	88403107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88403502_88403970
transcript_97209.known	chr9	-	809	6	FSM	ENSMUSG00000097195.11	ENSMUST00000239365.2	809	6	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_5	430.698688180032	609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404970	88403104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359_88404435_88404536_88404682_88404903
transcript_97210.known	chr9	-	1437	3	FSM	ENSMUSG00000097195.11	ENSMUST00000239344.2	1437	3	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_2	214.5	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404943	88403104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88403502_88403702_88403770_88403970
transcript_97211.known	chr9	-	1533	3	FSM	ENSMUSG00000097195.11	ENSMUST00000239284.2	1533	3	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_1	392.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTATTCAATTCTTT	NA	False	NA	-12	True	AATAAA	-35	NA	88404943	88403107	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88403770_88403970_88404435_88404536
transcript_97212.known	chr9	-	947	4	FSM	ENSMUSG00000097195.11	ENSMUST00000180563.10	947	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	498.70855439046	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404944	88403104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88403502_88403702_88403770_88404359_88404435_88404536
transcript_97213.known	chr9	-	1534	3	FSM	ENSMUSG00000097195.11	ENSMUST00000239278.2	1534	3	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_1	178	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88403502_88403702_88404435_88404536
transcript_97214.known	chr9	-	1636	2	FSM	ENSMUSG00000097195.11	ENSMUST00000239219.2	1636	2	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88403502_88403702
transcript_97215.known	chr9	-	1392	3	FSM	ENSMUSG00000097195.11	ENSMUST00000239290.2	1392	3	0	0	0	0	multi-exon	FALSE	canonical	3	1073	junction_1	58.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTCAATTGCAAATATTTA	NA	False	NA	-23	True	AATAAA	-24	NA	88404943	88403118	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88404029_88404359_88404435_88404536
transcript_97216.known	chr9	-	1781	2	FSM	ENSMUSG00000097195.11	ENSMUST00000239253.2	1781	2	0	0	0	0	multi-exon	FALSE	canonical	3	1190	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATATTTATTCAATTCT	NA	False	NA	-14	True	AATAAA	-33	NA	88404992	88403109	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88404435_88404536
transcript_97217.known	chr9	-	1104	4	FSM	ENSMUSG00000097195.11	ENSMUST00000239184.2	1104	4	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_2	276.362483384091	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359
transcript_97218.known	chr9	-	939	5	FSM	ENSMUSG00000097195.11	ENSMUST00000183045.3	939	5	0	0	0	0	multi-exon	FALSE	canonical	3	588	junction_4	231.258918746932	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88403502_88403702_88404029_88404359_88404435_88404536_88404640_88404903
transcript_97219.known	chr9	-	1623	2	FSM	ENSMUSG00000097195.11	ENSMUST00000239379.2	1623	2	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTCAATTGCAAATATTTA	NA	False	NA	-23	True	AATAAA	-24	NA	88404942	88403118	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88403770_88403970
transcript_97220.known	chr9	-	1012	5	FSM	ENSMUSG00000097195.11	ENSMUST00000239192.2	1012	5	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_4	476.290090176145	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTCAATTGCAAATATTTA	NA	False	NA	-23	True	AATAAA	-24	NA	88404986	88403118	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88403770_88403970_88404029_88404359_88404435_88404536_88404682_88404903
transcript_97222.known	chr9	+	3472	6	FSM	ENSMUSG00000032425.16	ENSMUST00000162827.8	3472	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	5.88557558782486	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCAGTTTGAGTAGTGTT	NA	False	NA	NA	False	NA	NA	NA	88430072	88453114	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_88430562_88434768_88434915_88436428_88436598_88449211_88449339_88449560_88449654_88450666
transcript_97228.known	chr9	+	3163	5	FSM	ENSMUSG00000032425.16	ENSMUST00000161458.3	3163	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	8.64580823289529	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCAGTTTGAGTAGTGTT	NA	False	NA	NA	False	NA	NA	NA	88430235	88453114	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_88430562_88436428_88436598_88449211_88449339_88449560_88449654_88450666
transcript_9723.known	chr10	+	1463	3	FSM	ENSMUSG00000020224.16	ENSMUST00000130198.3	1463	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	477.5	3144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTTGGAGTTTGACATTT	NA	False	NA	8	True	AATAAA	-17	NA	120063090	120067976	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_120063455_120063878_120064109_120067107
transcript_97252.known	chr9	-	725	4	FSM	ENSMUSG00000079427.11	ENSMUST00000186863.7	725	4	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_3	219.136182924378	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCTTGTCAAAATGAATCA	NA	False	NA	NA	False	NA	NA	NA	88601640	88570744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88571039_88597540_88597803_88598546_88598617_88601541
transcript_97261.nnic	chr9	-	840	3	NIC	ENSMUSG00000079427.11	novel	725	4	NA	NA	-99	0	combination_of_known_splicesites	FALSE	canonical	3	156	junction_2	185.5	1250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTAGAAATCAATAGAAAT	NA	False	NA	NA	False	AATAAA	-16	NA	88601739	88570658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_88571039_88597540_88597803_88601541
transcript_97264.known	chr9	-	473	2	FSM	ENSMUSG00000079427.11	ENSMUST00000186721.2	473	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTAGAAATCAATAGAAAT	NA	False	NA	NA	False	AATAAA	-16	NA	88601634	88570658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88571039_88601541
transcript_97265.known	chr9	-	863	2	FSM	ENSMUSG00000099974.2	ENSMUST00000098486.4	863	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCATGATTTCAGTTTT	NA	False	NA	NA	False	AATAAA	-24	NA	88613967	88605337	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88605586_88613352
transcript_97266.known	chr9	-	801	3	FSM	ENSMUSG00000079427.11	ENSMUST00000113110.5	801	3	0	0	0	0	multi-exon	TRUE	canonical	3	319	junction_2	104	2049	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAATCAATAGAAATTATT	NA	False	NA	NA	False	AATAAA	-20	NA	88601866	88570654	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88571039_88597540_88597803_88601711
transcript_9727.known	chr10	+	1664	3	FSM	ENSMUSG00000020224.16	ENSMUST00000020444.16	1664	3	0	0	0	0	multi-exon	FALSE	canonical	3	990	junction_2	137	12553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCATTCTCAGAATCGGTT	NA	False	NA	NA	False	NA	NA	NA	120062974	120068487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_120063029_120063878_120064109_120067107
transcript_97270.known	chr9	-	1044	5	FSM	ENSMUSG00000097177.9	ENSMUST00000180783.8	1044	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	55.97097462078	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAGAAAAAATGGGG	NA	False	NA	NA	False	NA	NA	NA	88740854	88725562	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88726320_88739866_88739925_88740278_88740354_88740442_88740498_88740755
transcript_97271.known	chr9	-	2702	5	FSM	ENSMUSG00000097177.9	ENSMUST00000180712.8	2702	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	54.3570372628973	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAATAATGAGTCACCTGA	NA	False	NA	NA	False	NA	NA	NA	88740906	88723850	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88726320_88739866_88739925_88740278_88740354_88740442_88740498_88740861
transcript_97275.nic	chr9	-	1065	5	NIC	ENSMUSG00000097177.9	novel	602	5	NA	NA	-17	409	combination_of_known_junctions	FALSE	canonical	2	6	junction_4	52.4976189936268	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAATGATTTCACATACAT	NA	False	NA	NA	False	AATAAA	-17	NA	88740871	88738875	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_88739637_88739866_88739925_88740278_88740354_88740442_88740498_88740755
transcript_97276.known	chr9	-	602	5	FSM	ENSMUSG00000097177.9	ENSMUST00000181448.3	602	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	50.4746223363781	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTGGTTATGAGCCATT	NA	False	NA	NA	False	TATAAA	-28	NA	88740923	88739284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_88739637_88739866_88739925_88740278_88740354_88740442_88740498_88740861
transcript_97278.nic	chr9	-	656	5	NIC	ENSMUSG00000097177.9	novel	602	5	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_4	52.4976189936268	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTGGTTATGAGCCATT	NA	False	NA	NA	False	TATAAA	-28	NA	88740871	88739284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_88739637_88739866_88739925_88740278_88740354_88740442_88740498_88740755
transcript_9728.known	chr10	+	767	4	FSM	ENSMUSG00000020224.16	ENSMUST00000220107.2	767	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	586.90373997786	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAAACTTTGTTTTCAGT	NA	False	NA	-91	True	NA	NA	NA	120063006	120067469	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_120063029_120063878_120064109_120066314_120066468_120067107
transcript_97283.known	chr9	+	819	2	FSM	ENSMUSG00000102037.2	ENSMUST00000098485.4	819	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCATGATTTCAGTTTT	5261	False	NA	NA	False	AATAAA	-24	NA	88838952	88844472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_88839524_88844224
transcript_97285.nnic	chr9	+	1053	5	Antisense	novelGene_ENSMUSG00000100602.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	14.9059551857638	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAATGATTTCACATACAT	NA	False	NA	NA	False	AATAAA	-17	NA	88948955	88958327	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr9_+_88949021_88949384_88949440_88949528_88949604_88957243_88957340_88957565
transcript_97287.nnic	chr9	+	1040	5	Antisense	novelGene_ENSMUSG00000100602.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	15	junction_3	8.87411967464942	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAATGATTTCACATACAT	NA	False	NA	NA	False	AATAAA	-17	NA	88948955	88958327	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr9_+_88949021_88949384_88949440_88949528_88949604_88957256_88957340_88957565
transcript_9729.known	chr10	-	3710	5	FSM	ENSMUSG00000056758.15	ENSMUST00000072777.14	3710	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	7.32717544487642	250	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGTGGTGTGTGTGTTCAG	NA	False	NA	-13	True	AATAAA	-20	NA	120312374	120197179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_120200202_120210572_120210606_120298568_120298620_120309156_120309244_120311857
transcript_97290.nnic	chr9	+	1129	5	Antisense	novelGene_ENSMUSG00000100602.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	16.976086121365	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAATGATTTCACATACAT	NA	False	NA	NA	False	AATAAA	-17	NA	88948985	88958327	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr9_+_88949127_88949384_88949440_88949528_88949604_88957243_88957340_88957565
transcript_97306.known	chr9	+	765	4	FSM	ENSMUSG00000066442.18	ENSMUST00000127438.8	765	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTTAAAGAGCAGATCTG	NA	False	NA	NA	False	NA	NA	NA	89092728	89122034	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_89092875_89097261_89097524_89108223_89108441_89121894
transcript_97313.known	chr9	+	705	4	FSM	ENSMUSG00000066442.18	ENSMUST00000117314.8	705	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	167.420296127905	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACATATGTATATTTT	NA	False	NA	NA	False	NA	NA	NA	89093435	89122168	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_89093535_89096464_89096535_89097261_89097524_89121894
transcript_97319.known	chr9	+	1406	4	FSM	ENSMUSG00000066442.18	ENSMUST00000187362.2	1406	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	184.790572150084	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGTATAAAAATAAAATAAT	NA	False	NA	NA	False	ATTAAA	-22	NA	89093463	89122244	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_89093535_89094586_89095310_89097261_89097524_89121894
transcript_97323.known	chr9	+	816	3	FSM	ENSMUSG00000066442.18	ENSMUST00000085256.8	816	3	0	0	0	0	multi-exon	TRUE	canonical	3	175	junction_1	109	891	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATTAGAATATTAATGCAA	NA	False	NA	NA	False	AATAAA	-35	NA	89093209	89122293	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_89093365_89097261_89097524_89121894
transcript_97329.known	chr9	+	481	2	FSM	ENSMUSG00000066442.18	ENSMUST00000144930.2	481	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAATCAATAGAAATTATTA	NA	False	NA	NA	False	AATAAA	-21	NA	89093438	89122279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_89093535_89121894
transcript_97331.known	chr9	+	1468	3	FSM	ENSMUSG00000066442.18	ENSMUST00000118887.8	1468	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	41	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTCTCCTTCCCTTC	NA	False	NA	NA	False	AATAAA	-14	NA	89093436	89109331	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_89093535_89097261_89097524_89108223
transcript_97335.known	chr9	-	1346	3	FSM	ENSMUSG00000032353.10	ENSMUST00000058488.9	1346	3	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	7.5	724	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTGGAGTGATGTGTGC	NA	False	NA	-12	True	AATAAA	-14	NA	89587121	89581258	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_89582033_89584824_89585074_89586798
transcript_97336.known	chr9	+	1617	12	FSM	ENSMUSG00000032359.15	ENSMUST00000034915.15	1617	12	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	3.46648653907957	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGCGTAGGTCTCTAAC	NA	False	NA	6	True	AATAAA	-18	NA	89936319	89958142	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_89936688_89942531_89942564_89943571_89943678_89944769_89944841_89946205_89946311_89946559_89946647_89947444_89947501_89949079_89949162_89950457_89950527_89953871_89953979_89956920_89957047_89957734
transcript_97348.known	chr9	-	603	6	FSM	ENSMUSG00000062270.15	ENSMUST00000188905.7	603	6	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_5	2557.70339171687	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAAAAGAACAAGCAGAA	NA	False	NA	NA	False	NA	NA	NA	89996582	89979938	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996266
transcript_97350.known	chr9	-	1824	12	FSM	ENSMUSG00000062270.15	ENSMUST00000169860.8	1824	12	0	0	0	0	multi-exon	FALSE	canonical	3	3415	junction_7	1167.30044572017	8521	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGGCCGTGTTATCAA	NA	False	NA	NA	False	AATAAA	-24	NA	89996827	89973717	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996588
transcript_97351.known	chr9	-	1882	13	FSM	ENSMUSG00000062270.15	ENSMUST00000085248.12	1882	13	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_10	2408.59367105002	3023	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGGCCGTGTTATCAA	NA	False	NA	NA	False	AATAAA	-24	NA	89996768	89973717	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89985707_89985825_89989287_89989356_89992178_89992226_89996588
transcript_97352.known	chr9	-	1223	11	FSM	ENSMUSG00000062270.15	ENSMUST00000191189.7	1223	11	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_7	2089.62901970661	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTCTTCCTTTTTTCA	NA	False	NA	NA	False	AATAAA	-15	NA	89996797	89974207	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89984352_89984440_89989287_89989356_89992178_89992226_89996588
transcript_97353.known	chr9	-	666	4	FSM	ENSMUSG00000062270.15	ENSMUST00000189241.2	666	4	0	0	0	0	multi-exon	FALSE	canonical	3	6344	junction_1	302.711083378194	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGTGTTGGAAATTCTAG	NA	False	NA	NA	False	NA	NA	NA	89996663	89983963	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_89984440_89989287_89989356_89992178_89992226_89996588
transcript_97355.known	chr9	+	1471	9	FSM	ENSMUSG00000032369.14	ENSMUST00000186364.2	1471	9	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_1	116.228223766863	174	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAGAGTTGATGTTACT	NA	False	NA	NA	False	NA	NA	NA	92132394	92154028	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_92132478_92140100_92140128_92141326_92141408_92145085_92145331_92146698_92146742_92148443_92148665_92148764_92148927_92151867_92152030_92153581
transcript_97358.known	chr9	+	700	5	FSM	ENSMUSG00000074139.9	ENSMUST00000135182.3	700	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.866025403784439	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTGTTTGGCTTTCCCA	NA	False	NA	NA	False	ATTAAA	-22	NA	92233137	92239929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_92233200_92234587_92234750_92235519_92235659_92236597_92236760_92239754
transcript_97359.known	chr9	+	3663	20	FSM	ENSMUSG00000032374.15	ENSMUST00000160359.2	3663	20	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_13	23.4907891420283	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAAACATTGTGCCTCT	NA	False	NA	NA	False	NA	NA	NA	92424316	92490473	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_92424622_92453307_92453400_92455523_92455661_92463254_92463419_92466543_92466657_92468891_92468956_92470653_92470752_92473352_92473455_92475797_92475924_92477314_92477437_92478388_92478494_92480640_92480767_92482793_92482936_92484037_92484101_92485000_92485115_92486831_92486898_92487425_92487531_92488560_92488708_92488816_92488943_92489127
transcript_9736.known	chr10	-	3843	7	FSM	ENSMUSG00000051236.14	ENSMUST00000092143.12	3843	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.34370962471642	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTCTCTGCTTCCTAAA	NA	False	NA	NA	False	AATAAA	-20	NA	120735006	120617000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_120620144_120627306_120627405_120661012_120661042_120685880_120685959_120687888_120687998_120706939_120707057_120734737
transcript_97360.known	chr9	+	3649	19	FSM	ENSMUSG00000032374.15	ENSMUST00000070522.14	3649	19	0	0	0	0	multi-exon	TRUE	canonical	3	58	junction_10	9.44264688775947	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGCCTCTCTGTCTTA	NA	False	NA	NA	False	NA	NA	NA	92424275	92490481	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_92424622_92453307_92453400_92455523_92455661_92463254_92463419_92466543_92466657_92468891_92468956_92470653_92470752_92473352_92473455_92475797_92475924_92477314_92477437_92478388_92478494_92480640_92480767_92482793_92482936_92485000_92485115_92486831_92486898_92487425_92487531_92488560_92488708_92488816_92488943_92489127
transcript_97366.known	chr9	-	3520	27	FSM	ENSMUSG00000032407.15	ENSMUST00000078374.13	3520	27	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_13	216.387107234962	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAATGTTGTTTTTTTGCCC	8191	False	NA	-1	True	AATAAA	-17	NA	95394049	95343030	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_95343597_95344755_95344933_95346415_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373317_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95384592_95384638_95393869
transcript_97367.known	chr9	-	3111	28	FSM	ENSMUSG00000032407.15	ENSMUST00000217176.2	3111	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	167.860448931548	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTATATTTCTAAGATGCTG	8302	False	NA	NA	False	CATAAA	-25	NA	95393938	95343457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_95343597_95344755_95344933_95346415_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373320_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95382740_95382873_95384592_95384638_95393869
transcript_97368.known	chr9	+	1319	1	FSM	ENSMUSG00000101037.2	ENSMUST00000187393.2	1319	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTACTTGCTTCTGTGA	1399	False	NA	NA	False	AATAAA	-19	NA	95394203	95395522	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_95394200_95395500
transcript_97369.known	chr9	-	3704	16	FSM	ENSMUSG00000049493.14	ENSMUST00000093800.9	3704	16	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	11.5231168623	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGTTTATTTCATTTAA	NA	False	NA	2	True	AATAAA	-19	NA	95727339	95634694	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_95636491_95636713_95636839_95643365_95643490_95643986_95644121_95647743_95647859_95651146_95651226_95655570_95655767_95657360_95657457_95658518_95658662_95658741_95658908_95664422_95664505_95666152_95666286_95667542_95667673_95668985_95669150_95677814_95677920_95727223
transcript_9737.known	chr10	+	2971	3	FSM	ENSMUSG00000087480.2	ENSMUST00000127564.2	2971	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	0.5	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGGAATCATGAAAAGTT	NA	False	NA	NA	False	ATTAAA	-12	NA	120693533	120699231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_120693667_120694852_120694965_120696505
transcript_97370.nic	chr9	+	3539	27	ISM	ENSMUSG00000032410.14	ENSMUST00000034981.14	5499	42	-20	41162	-20	0	5prime_fragment	FALSE	canonical	3	35	junction_24	7.47273149365955	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAATTTAAAATTTCTTT	NA	False	NA	NA	False	AATATA	-35	NA	95836792	95893918	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_95836997_95846023_95846257_95849764_95849863_95851285_95851396_95851499_95851611_95852781_95852865_95855331_95855420_95855502_95855672_95856448_95856517_95856814_95856953_95859582_95859650_95859849_95859956_95861187_95861278_95863827_95863985_95867236_95867357_95870889_95871060_95873028_95873150_95873241_95873341_95877152_95877257_95880268_95880401_95881466_95881630_95884187_95884302_95885896_95885996_95888049_95888166_95888753_95888901_95893263_95893354_95893576
transcript_97375.known	chr9	+	357	3	FSM	ENSMUSG00000032410.14	ENSMUST00000189106.2	357	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	28.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACAGAAGCCAGATTCGAT	NA	False	NA	NA	False	ATTAAA	-29	NA	95836845	95849823	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_95836997_95846109_95846257_95849764
transcript_97376.nnic	chr9	+	373	3	NNC	ENSMUSG00000032409.16	novel	4597	23	NA	NA	-5988	-2784	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_2	42.5	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGTGAATCTATAACATAC	NA	False	NA	NA	False	NA	NA	NA	95779728	95783307	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_95779796_95781089_95781204_95783115
transcript_97377.nic	chr9	+	580	2	ISM	ENSMUSG00000032409.16	ENSMUST00000189602.7	982	3	-40	1764	13	19	5prime_fragment	FALSE	canonical	3	121	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGAAATTTGGTACCAACA	NA	False	NA	NA	False	NA	NA	NA	95739662	95743827	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_95739837_95743421
transcript_97378.known	chr9	+	982	3	FSM	ENSMUSG00000032409.16	ENSMUST00000189602.7	982	3	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_2	8.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAACC	NA	False	NA	NA	False	NA	NA	NA	95739702	95745591	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_95739837_95743421_95743514_95744835
transcript_97379.known	chr9	+	2815	16	FSM	ENSMUSG00000041440.19	ENSMUST00000085217.12	2815	16	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	8.15843122174846	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTGCCTACTTCACAG	NA	False	NA	NA	False	CATAAA	-13	NA	96001414	96062243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_96001666_96011053_96011148_96015441_96015518_96019797_96019892_96022591_96022724_96027724_96027801_96032268_96032331_96032487_96032562_96032788_96032850_96035133_96035261_96037445_96037551_96053512_96053608_96056742_96056847_96058282_96058343_96059471_96059606_96060973
transcript_97381.nnic	chr9	+	1748	12	NNC	ENSMUSG00000041440.19	novel	2815	16	NA	NA	-2	-17006	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	20.9840553400051	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAGAGAGAGAAAGAGAG	NA	False	NA	NA	False	AAAAAG	-37	NA	96001412	96038512	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_96001666_96011053_96011148_96015441_96015518_96019797_96019892_96022591_96022724_96027724_96027801_96032268_96032331_96032487_96032562_96032788_96032850_96035133_96035261_96037445_96037551_96037918
transcript_9739.known	chr10	+	2294	10	FSM	ENSMUSG00000020218.12	ENSMUST00000020439.11	2294	10	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	5.2704627669473	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGGGTCTTTGTAAGACT	NA	False	NA	NA	False	AATAAA	-27	NA	120869864	120936555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_120870396_120870870_120871011_120911150_120911260_120918030_120918172_120919792_120919889_120920813_120920910_120926015_120926112_120931903_120932000_120932545_120932642_120935662
transcript_97392.known	chr9	+	1713	14	FSM	ENSMUSG00000032411.16	ENSMUST00000188750.7	1713	14	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_3	94.2279120445955	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACAGGAGAGAACTCATGT	NA	False	NA	-6	True	NA	NA	NA	96078389	96200024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_96078614_96084183_96084242_96105146_96105252_96114734_96114802_96155891_96155996_96169653_96169776_96172632_96172681_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
transcript_97396.known	chr9	+	1576	12	FSM	ENSMUSG00000032411.16	ENSMUST00000188008.7	1576	12	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_2	138.805946951458	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAATAAAGACAGGAGAGAA	NA	False	NA	-13	True	NA	NA	NA	96078369	96200017	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_96078614_96084183_96084242_96114734_96114802_96155891_96155996_96169653_96169776_96177017_96177181_96179676_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
transcript_9740.known	chr10	+	1493	6	FSM	ENSMUSG00000020218.12	ENSMUST00000145691.2	1493	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	6.01331855134916	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTGAGTACTGTATGGG	NA	False	NA	NA	False	AATAAA	-14	NA	120919659	120936542	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_120919889_120920813_120920910_120926015_120926112_120931903_120932000_120932545_120932642_120935662
transcript_97400.known	chr9	+	2212	11	FSM	ENSMUSG00000032411.16	ENSMUST00000165768.4	2212	11	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	147.7810542661	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATGTTCTTTTCCATATT	NA	False	NA	-72	True	NA	NA	NA	96141337	96200958	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_96141354_96155891_96155996_96169653_96169776_96172632_96172681_96177017_96177181_96179676_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
transcript_97403.known	chr9	+	1340	10	FSM	ENSMUSG00000032411.16	ENSMUST00000189606.7	1340	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	155.361943001925	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGACAGGAGAGAACTC	NA	False	NA	-10	True	NA	NA	NA	96140811	96200020	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_96140942_96155891_96155996_96169653_96169776_96177017_96177181_96179676_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
transcript_97409.nic	chr9	+	608	3	ISM	ENSMUSG00000032411.16	ENSMUST00000189606.7	1340	10	51612	-4	-195	0	3prime_fragment	FALSE	canonical	3	407	junction_1	14.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACAGGAGAGAACTCATGT	NA	False	NA	-6	True	NA	NA	NA	96192423	96200024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_96192742_96199529_96199636_96199840
transcript_9741.known	chr10	+	483	1	FSM	ENSMUSG00000111940.2	ENSMUST00000218322.2	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTGTACACAAAGAAATAAA	NA	False	NA	NA	False	NA	NA	NA	121179080	121179563	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_121179100_121179600
transcript_97410.nic	chr9	+	1618	3	ISM	ENSMUSG00000032411.16	ENSMUST00000179065.8	2213	10	51118	0	-195	0	3prime_fragment	FALSE	canonical	3	407	junction_1	14.5	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCAATATTCAGTGTTTT	NA	False	NA	4	True	NA	NA	NA	96192423	96201034	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_96192742_96199529_96199636_96199840
transcript_97411.nic	chr9	-	1767	7	NIC	ENSMUSG00000032412.9	novel	1994	7	NA	NA	19	0	combination_of_known_junctions	TRUE	canonical	1	12	junction_6	297.823773396282	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGAACACATGATGGAGT	NA	False	NA	-10	True	AATAAA	-41	NA	96231410	96214707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_96215748_96217431_96217516_96220711_96220763_96222254_96222440_96225320_96225429_96227817_96227947_96231240
transcript_97412.known	chr9	-	1994	7	FSM	ENSMUSG00000032412.9	ENSMUST00000034983.7	1994	7	0	0	0	0	multi-exon	FALSE	canonical	3	621	junction_2	81.5754592727222	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGAACACATGATGGAGT	NA	False	NA	-10	True	AATAAA	-41	NA	96246495	96214707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_96215748_96217431_96217516_96220711_96220763_96222254_96222440_96225320_96225429_96227817_96227947_96246098
transcript_97416.known	chr9	-	325	2	FSM	ENSMUSG00000051234.7	ENSMUST00000128955.2	325	2	0	0	0	0	multi-exon	FALSE	canonical	3	1105	junction_1	0	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCGCTGTGGTAACCCAGG	3800	False	NA	NA	False	ATTAAA	-15	NA	96360641	96355914	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_96356059_96360460
transcript_9742.known	chr10	+	423	2	FSM	ENSMUSG00000112527.2	ENSMUST00000218852.2	423	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCATCACAATTCCAAGTT	NA	False	NA	NA	False	NA	NA	NA	121346302	121358896	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_121346531_121358701
transcript_97422.known	chr9	-	2937	3	FSM	ENSMUSG00000040433.17	ENSMUST00000126066.8	2937	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCCAAACAGCTGAGAAAAAT	9514	False	NA	NA	False	AAGAAA	-1	NA	96601903	96568310	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_96571083_96600262_96600363_96601838
transcript_97423.known	chr9	-	7406	6	FSM	ENSMUSG00000040433.17	ENSMUST00000152594.8	7406	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.01980390271856	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTAAGTGTCTTTTCTAA	2378	False	NA	-17	True	ATTAAA	-14	NA	96634884	96564822	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_96571083_96600262_96600363_96613344_96613796_96614300_96614367_96633354_96633437_96634437
transcript_97424.known	chr9	-	1799	3	FSM	ENSMUSG00000040433.17	ENSMUST00000132060.8	1799	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATACAACTTTGGGAAGAA	2482	False	NA	NA	False	NA	NA	NA	96634780	96629333	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_96629572_96630522_96630658_96633354
transcript_97435.known	chr9	-	2908	6	FSM	ENSMUSG00000043587.16	ENSMUST00000078478.8	2908	6	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	3.9293765408777	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTGTACAGCTTACGGTG	NA	False	NA	-2	True	AATAAA	-16	NA	96771482	96705396	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_96707676_96710982_96711123_96721138_96721266_96722011_96722171_96738420_96738553_96771411
transcript_97437.nnic	chr9	+	640	2	Genic_Genomic	ENSMUSG00000062933.8	novel	490	1	NA	NA	-48	220	multi-exon	FALSE	canonical	0	0	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAGCACCTGACACAA	NA	False	NA	NA	False	NA	NA	NA	96777662	96778420	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr9_+_96777782_96777899
transcript_9744.known	chr10	-	3005	21	FSM	ENSMUSG00000020115.4	ENSMUST00000219400.2	3005	21	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_17	34.6538598138793	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAAGGCTTGTGTGCTTTT	3888	False	NA	-5	True	AATAAA	-17	NA	121422682	121382364	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_121383094_121387155_121387228_121387391_121387499_121388104_121388202_121388312_121388415_121388933_121388974_121389649_121389727_121389807_121389930_121391891_121391971_121393106_121393209_121395751_121395844_121396145_121396205_121397481_121397679_121399830_121400011_121403933_121404045_121406535_121406697_121407747_121407930_121412182_121412309_121414484_121414626_121420100_121420247_121422599
transcript_97441.known	chr9	+	490	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	823	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAATTTCTTTTGACTTGC	NA	False	NA	NA	False	NA	NA	NA	96777710	96778200	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_96777700_96778200
transcript_97450.nnic	chr9	-	2551	8	NNC	ENSMUSG00000032449.14	novel	1203	8	NA	NA	-17	1160	at_least_one_novel_splicesite	FALSE	canonical	3	212	junction_4	351.164593073635	52	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGTGCAATGGCTTTC	NA	False	NA	-14	True	ATTAAA	-37	NA	96993227	96959809	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_96961293_96962245_96962536_96967109_96967177_96971543_96971647_96975129_96975231_96979155_96979234_96982127_96982293_96992963
transcript_97455.known	chr9	-	5227	7	FSM	ENSMUSG00000032449.14	ENSMUST00000085206.11	5227	7	0	0	0	0	multi-exon	FALSE	canonical	3	263	junction_3	363.380272197353	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGCTCTTGTTTCCACCT	NA	False	NA	0	True	NA	NA	NA	96993210	96957013	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_96961293_96962245_96962536_96967109_96967177_96975129_96975231_96979155_96979234_96982127_96982293_96992963
transcript_97463.known	chr9	-	685	4	FSM	ENSMUSG00000032449.14	ENSMUST00000148337.2	685	4	0	0	0	0	multi-exon	FALSE	canonical	3	669	junction_1	32.124756808418	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATACCTCTACTGGAGTTA	NA	False	NA	NA	False	NA	NA	NA	96993040	96974865	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_96975231_96979155_96979234_96982127_96982293_96992963
transcript_97465.nic	chr9	-	521	3	ISM	ENSMUSG00000032449.14	ENSMUST00000148337.2	685	4	-187	4276	-17	2214	5prime_fragment	FALSE	canonical	3	717	junction_2	15	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAATAAGTAAGATTCTGGC	NA	False	NA	NA	False	NA	NA	NA	96993227	96979141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_-_96979234_96982127_96982293_96992963
transcript_97466.known	chr9	-	3229	4	FSM	ENSMUSG00000032449.14	ENSMUST00000124250.3	3229	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	331.985274104473	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCACAGTAAATATTTCTT	1968	False	NA	19	True	ATTAAA	-8	NA	96982273	96971754	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_96974659_96975129_96975231_96979155_96979234_96982127
transcript_97467.known	chr9	+	798	1	FSM	ENSMUSG00000101502.2	ENSMUST00000190579.2	798	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGTACACTGAATTTTC	NA	False	NA	NA	False	AAAAAG	-33	NA	97061231	97062029	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_97061200_97062000
transcript_97468.nnic	chr9	+	456	3	Antisense	novelGene_ENSMUSG00000101000.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_2	0.5	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTATTTATTTATTTACA	NA	False	NA	NA	False	AATAAA	-16	NA	97064781	97092122	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr9_+_97064889_97090601_97090728_97091899
transcript_97472.known	chr9	+	2166	5	FSM	ENSMUSG00000032456.14	ENSMUST00000112935.8	2166	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	3.53553390593274	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTCTCTTTTTTTTTTCTT	NA	False	NA	NA	False	AATAAA	-26	NA	98178635	98293487	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_98179034_98236071_98236218_98281508_98281693_98285586_98285667_98292129
transcript_97474.known	chr9	+	577	1	FSM	ENSMUSG00000101452.2	ENSMUST00000190473.2	577	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	218	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAGAAAATGACTGAAT	NA	False	NA	NA	False	NA	NA	NA	98183702	98184279	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_98183700_98184300
transcript_97475.known	chr9	+	2652	4	FSM	ENSMUSG00000046402.11	ENSMUST00000052068.11	2652	4	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	8.01387685344754	452	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTACCTTCACTTGTTTT	2885	False	NA	41	True	AATAAA	-42	NA	98305013	98328628	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_98307105_98307505_98307685_98326642_98326745_98328348
transcript_97477.known	chr9	+	803	5	FSM	ENSMUSG00000032454.10	ENSMUST00000189446.7	803	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.29903810567666	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTCCCATCTTTTACTTC	NA	False	NA	NA	False	ATTAAA	-30	NA	98368167	98391834	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_98368300_98372600_98372736_98380768_98380948_98389841_98389944_98391579
transcript_97478.known	chr9	-	652	1	FSM	ENSMUSG00000051074.5	ENSMUST00000058992.3	652	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAGTGCAAATACATTGT	NA	False	NA	NA	False	AATAAA	-31	NA	98445664	98445012	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_98445000_98445700
transcript_9748.nnic	chr10	-	1081	7	NNC	ENSMUSG00000020115.4	novel	442	4	NA	NA	-9	1674	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	53.7817089931347	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAGACTTGTGGAGTGAAG	3869	False	NA	NA	False	AGTAAA	-19	NA	121422701	121406131	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_-_121406351_121406535_121406697_121407747_121407930_121412178_121412309_121414484_121414626_121420100_121420247_121422599
transcript_97480.known	chr9	+	3050	22	FSM	ENSMUSG00000032458.7	ENSMUST00000035033.7	3050	22	0	0	0	0	multi-exon	TRUE	canonical	3	669	junction_10	53.4673910412871	739	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTTGAGTTTCCTTCCT	NA	False	NA	19	True	CATAAA	-20	NA	98445783	98470435	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_98445877_98450045_98450184_98452358_98452446_98452635_98452763_98453546_98453696_98455487_98455635_98456118_98456219_98459010_98459154_98459380_98459581_98461033_98461145_98462134_98462224_98462310_98462418_98463187_98463332_98464324_98464456_98464742_98464951_98467035_98467147_98467984_98468200_98469092_98469186_98469277_98469459_98469604_98469674_98469813_98469883_98470097
transcript_97487.known	chr9	-	1197	8	FSM	ENSMUSG00000032459.10	ENSMUST00000035034.10	1197	8	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_2	42.1929484387994	1491	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCTGTAATTCGTTTTT	NA	False	NA	-9	True	ATTAAA	-20	NA	98483713	98470782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_98470980_98472087_98472197_98474607_98474754_98476125_98476210_98476722_98476867_98478872_98479038_98480187_98480352_98483525
transcript_9749.nic	chr10	-	1268	6	ISM	ENSMUSG00000020115.4	ENSMUST00000020316.4	3024	21	-9	23770	-9	1676	5prime_fragment	FALSE	canonical	3	128	junction_1	11.774548823628	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGACTTGTGGAGTGAAGTT	3869	False	NA	NA	False	AGTAAA	-21	NA	121422701	121406129	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_121406697_121407747_121407930_121412178_121412309_121414484_121414626_121420100_121420247_121422599
transcript_97496.known	chr9	+	521	1	FSM	ENSMUSG00000103949.2	ENSMUST00000192207.2	521	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTTTGCCGCAGAAGATT	NA	False	NA	NA	False	NA	NA	NA	98653157	98653678	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_98653200_98653700
transcript_97499.known	chr9	+	1817	1	FSM	ENSMUSG00000090470.3	ENSMUST00000167951.3	1817	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTGAGTCAAAAATCATAGC	NA	False	NA	6	True	AATAAA	-19	NA	98746819	98748636	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_98746800_98748600
transcript_9750.nic	chr10	-	627	4	ISM	ENSMUSG00000020115.4	ENSMUST00000020316.4	3024	21	-9	29711	-9	-4265	5prime_fragment	FALSE	canonical	3	131	junction_3	12.2474487139159	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTATTCAATGTTTTCT	3869	False	NA	NA	False	AATGAA	-30	NA	121422701	121412070	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_121412309_121414484_121414626_121420100_121420247_121422599
transcript_97507.known	chr9	+	803	6	FSM	ENSMUSG00000032463.11	ENSMUST00000112911.9	803	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	126.927695953247	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGATGGCTGTGGTAATTA	3545	False	NA	NA	False	NA	NA	NA	98868426	98883802	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_98868566_98872967_98873025_98874153_98874287_98874565_98874795_98881019_98881070_98883607
transcript_97516.nnic	chr9	+	1003	5	NNC	ENSMUSG00000032463.11	novel	1019	5	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	128.230992743564	656	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTGGGTTTGGTTTCATG	3531	False	NA	9	True	AATAAA	-23	NA	98868412	98884074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_98868566_98874153_98874258_98874565_98874795_98881019_98881070_98883607
transcript_97518.known	chr9	+	1019	5	FSM	ENSMUSG00000032463.11	ENSMUST00000035038.8	1019	5	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_2	16.8430252627015	2575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTGGGTTTGGTTTCATG	3544	False	NA	9	True	AATAAA	-23	NA	98868425	98884074	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_98868566_98874153_98874287_98874565_98874795_98881019_98881070_98883607
transcript_97523.known	chr9	-	785	5	FSM	ENSMUSG00000096316.8	ENSMUST00000178051.8	785	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	2.6809513236909	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTAGTCTGCAATGTTTT	NA	False	NA	NA	False	ATTAAA	-26	NA	99119292	99111428	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_99111671_99114500_99114551_99116351_99116581_99118292_99118411_99119146
transcript_97529.known	chr9	+	2606	18	FSM	ENSMUSG00000056267.15	ENSMUST00000093795.10	2606	18	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_10	72.0150887688172	445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAAGTGTCCCTAGTGACT	NA	False	NA	18	True	AATAAA	-23	NA	99125494	99182457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_99125544_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631_99179747_99180555_99180636_99181780
transcript_97532.nic	chr9	+	2719	18	NIC	ENSMUSG00000056267.15	novel	2606	18	NA	NA	6	0	combination_of_known_junctions	TRUE	canonical	3	66	junction_1	83.1088001619555	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAAGTGTCCCTAGTGACT	NA	False	NA	18	True	AATAAA	-23	NA	99125425	99182457	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_99125544_99128275_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631_99179747_99180555_99180636_99181780
transcript_9755.known	chr10	-	6005	25	FSM	ENSMUSG00000034667.9	ENSMUST00000218004.2	6005	25	0	0	0	0	multi-exon	FALSE	canonical	3	537	junction_24	166.742560845221	165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATTGGAGTGGGCCTTTT	NA	False	NA	-8	True	AATAAA	-16	NA	121462237	121423284	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447618_121449127_121449297_121449391_121449577_121450909_121451129_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121462009
transcript_97550.known	chr9	+	1768	6	FSM	ENSMUSG00000056267.15	ENSMUST00000190715.7	1768	6	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	56.4361586219332	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTTCTTGGTCATCAT	NA	False	NA	7	True	NA	NA	NA	99125513	99146981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_99125544_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681
transcript_97553.known	chr9	+	740	6	FSM	ENSMUSG00000056267.15	ENSMUST00000185799.7	740	6	0	0	0	0	multi-exon	TRUE	canonical	3	66	junction_1	121.109867475776	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAATAGAATAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	99125419	99145815	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_99125544_99128275_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681
transcript_97566.nnic	chr9	+	619	4	NNC	ENSMUSG00000056267.15	novel	1768	6	NA	NA	-29	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	153.153517752613	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTTCTTGGTCATCATGT	NA	False	NA	9	True	NA	NA	NA	99125465	99146983	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_99125544_99128319_99128420_99136307_99136431_99146665
transcript_97570.known	chr9	+	2120	16	FSM	ENSMUSG00000056267.15	ENSMUST00000191335.7	2120	16	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_10	76.0584570504089	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTTGAGTTGGATTATA	NA	False	NA	NA	False	ATTAAA	-13	NA	99125515	99180038	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_99125544_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631
transcript_97575.nic	chr9	-	1460	6	NIC	ENSMUSG00000032470.18	novel	1190	6	NA	NA	-317	0	combination_of_known_junctions	FALSE	canonical	3	96	junction_5	168.084978507896	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTGGCGAAGCCCCAAG	2233	False	NA	28	True	ATTAAA	-15	NA	99302522	99270031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99302132
transcript_97581.known	chr9	-	1190	6	FSM	ENSMUSG00000032470.18	ENSMUST00000119472.8	1190	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_5	193.993195756965	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTGGCGAAGCCCCAAG	NA	False	NA	28	True	ATTAAA	-15	NA	99307949	99270031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99307829
transcript_97583.known	chr9	-	4701	6	FSM	ENSMUSG00000032470.18	ENSMUST00000035045.15	4701	6	0	0	0	0	multi-exon	FALSE	canonical	3	447	junction_5	30.9644957976067	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCCTTATTTCCTCTTC	3239	False	NA	-4	True	NA	NA	NA	99319434	99267472	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99318362
transcript_97593.known	chr9	-	1167	6	FSM	ENSMUSG00000032470.18	ENSMUST00000122384.9	1167	6	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_5	190.404411713594	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGGCTGTTGTCTTCTTAA	3694	False	NA	21	True	GATAAA	-10	NA	99318979	99269980	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99318933
transcript_97594.known	chr9	-	4647	22	FSM	ENSMUSG00000032468.12	ENSMUST00000035043.12	4647	22	0	0	0	0	multi-exon	TRUE	canonical	3	93	junction_7	54.8151294142266	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTTTTCCAAGTGACTG	NA	False	NA	6	True	AATAAA	-35	NA	99450952	99360424	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_99362831_99365152_99365247_99366018_99366092_99369916_99370013_99378203_99378300_99379295_99379446_99381345_99381439_99384564_99384652_99387317_99387400_99387702_99387786_99402539_99402636_99405191_99405393_99407405_99407467_99408943_99409035_99409131_99409208_99411383_99411465_99415150_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99433595_99433673_99450654
transcript_97601.known	chr9	-	2820	12	FSM	ENSMUSG00000032468.12	ENSMUST00000185524.7	2820	12	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_11	21.8011297000487	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTTTATGTGTGTGATA	NA	False	NA	-1	True	AATAAA	-28	NA	99450702	99400856	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_99402636_99405191_99405393_99407405_99407467_99408943_99409035_99409131_99409208_99411383_99411465_99415150_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99433595_99433673_99450654
transcript_97605.known	chr9	-	340	2	FSM	ENSMUSG00000032468.12	ENSMUST00000191370.2	340	2	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTGTAGAACACTTGTT	NA	False	NA	NA	False	CATAAA	-37	NA	99450716	99433394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_99433673_99450654
transcript_97606.known	chr9	-	2761	11	FSM	ENSMUSG00000032468.12	ENSMUST00000186049.2	2761	11	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_10	66.7805360864975	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTTTATGTGTGTGATA	NA	False	NA	-1	True	AATAAA	-28	NA	99450720	99400856	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_99402636_99405191_99405393_99407405_99407467_99408943_99409035_99409131_99409208_99411383_99411465_99415150_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99450654
transcript_97607.known	chr9	+	2261	8	FSM	ENSMUSG00000032469.13	ENSMUST00000066650.12	2261	8	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_3	17.2933867270063	792	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCCATCCTGCTGCAT	6406	False	NA	49	True	TATAAA	-1	NA	99457851	99466554	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_99458179_99458628_99458754_99460493_99460575_99461409_99461496_99462191_99462417_99464074_99464156_99464369_99464516_99465364
transcript_97610.known	chr9	+	3981	16	FSM	ENSMUSG00000037784.15	ENSMUST00000078367.12	3981	16	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	6.14997741639937	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTCGTTCTTTGTTATT	NA	False	NA	NA	False	AATATA	-21	NA	99511594	99551309	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_99511723_99519399_99519976_99521866_99521952_99523786_99523906_99524585_99524748_99529139_99529269_99531607_99531671_99532966_99533108_99536912_99536944_99537630_99537685_99541685_99541829_99542974_99543159_99544993_99545211_99545578_99545770_99547767_99547908_99549691
transcript_97613.known	chr9	-	550	2	FSM	ENSMUSG00000101042.2	ENSMUST00000187644.2	550	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTGGTGATCTTTATAT	NA	False	NA	NA	False	ATTAAA	-12	NA	100205577	100203663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_100203977_100205340
transcript_97619.known	chr9	-	4476	4	FSM	ENSMUSG00000032475.16	ENSMUST00000116522.8	4476	4	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_2	6.34209919681348	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATTTATAGCCATATTGA	NA	False	NA	NA	False	AATAAA	-23	NA	100428187	100374345	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_100377725_100379310_100380024_100390481_100390726_100428047
transcript_97623.known	chr9	-	1513	3	FSM	ENSMUSG00000032475.16	ENSMUST00000112874.4	1513	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	62	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCAGATATTGCATCTGT	NA	False	NA	-40	True	AATAAA	-18	NA	100388909	100377055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_100377725_100379310_100380024_100388778
transcript_97624.known	chr9	-	1590	2	FSM	ENSMUSG00000070287.4	ENSMUST00000093792.4	1590	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATGATCTTTGTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	100453143	100434240	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_100435688_100453000
transcript_97627.known	chr9	+	6186	34	FSM	ENSMUSG00000037286.16	ENSMUST00000129269.8	6186	34	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_9	35.0771941586826	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGTGGTTATCCTGTTGC	NA	False	NA	15	True	AATAAA	-15	NA	100525500	100840598	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_100525850_100587205_100587308_100594490_100594594_100620030_100620196_100639742_100639840_100658808_100658886_100668544_100668750_100678756_100678909_100685333_100685408_100716470_100716595_100727068_100727168_100730711_100730792_100737849_100737958_100748152_100748268_100762828_100762947_100769432_100769537_100769882_100769976_100770074_100770165_100770298_100770503_100771613_100771685_100773101_100773190_100790689_100790771_100810075_100810169_100811893_100812069_100813639_100813780_100824690_100824793_100826821_100826971_100827908_100828038_100829134_100829341_100833659_100833835_100835538_100835650_100836273_100836389_100838421_100838503_100838587
transcript_97631.known	chr9	+	1793	9	FSM	ENSMUSG00000037286.16	ENSMUST00000155108.8	1793	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	140.94009143959	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAATGGTTCTCAAGTT	NA	False	NA	0	True	AATAAA	-15	NA	100525688	100839452	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_100525850_100587205_100587308_100594490_100594594_100620030_100620196_100639742_100639840_100835545_100835650_100836273_100836389_100838421_100838503_100838587
transcript_97639.nnic	chr9	-	721	6	Antisense	novelGene_ENSMUSG00000037286.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_2	3.26190128606002	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCTGAAATTGTATTTAGT	NA	False	NA	NA	False	AATAAA	-30	NA	100851645	100826778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr9_-_100827008_100829161_100829254_100838081_100838193_100842389_100842496_100843014_100843098_100851545
transcript_9764.nnic	chr10	-	1417	3	Antisense	novelGene_ENSMUSG00000047642.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0.5	23	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTGGTCATGGTGTC	4700	False	NA	NA	False	NA	NA	NA	121493445	121490296	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr10_-_121490799_121492206_121493021_121493344
transcript_97653.known	chr9	+	2022	4	FSM	ENSMUSG00000037286.16	ENSMUST00000143816.8	2022	4	0	0	0	0	multi-exon	FALSE	canonical	3	359	junction_3	26.9196334794266	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATAGTTTGTCATTAGTT	NA	False	NA	NA	False	AATAAA	-22	NA	100525652	100621650	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_100525850_100587205_100587308_100594490_100594594_100620030
transcript_97654.known	chr9	+	588	4	FSM	ENSMUSG00000037286.16	ENSMUST00000123315.8	588	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	189.42779333796	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCAGTTTCAGAGAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	100525665	100594743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_100525850_100545302_100545352_100587205_100587308_100594490
transcript_97661.known	chr9	+	558	3	FSM	ENSMUSG00000037286.16	ENSMUST00000144005.8	558	3	0	0	0	0	multi-exon	FALSE	canonical	3	414	junction_1	2	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTAGCATTGTCTACTG	NA	False	NA	NA	False	NA	NA	NA	100525665	100594762	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_100525850_100587205_100587308_100594490
transcript_97666.known	chr9	-	2320	15	FSM	ENSMUSG00000032527.14	ENSMUST00000035116.12	2320	15	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_12	14.4016722385043	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTGTTGTTTTTTTAT	NA	False	NA	0	True	NA	NA	NA	100916951	100864084	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_100864860_100866425_100866526_100867180_100867280_100867583_100867685_100867831_100867940_100869833_100869958_100876620_100876703_100877612_100877734_100881217_100881327_100894757_100894869_100905188_100905303_100909132_100909190_100912227_100912297_100913908_100914029_100916721
transcript_97668.known	chr9	-	2188	14	FSM	ENSMUSG00000032527.14	ENSMUST00000149322.8	2188	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	26.8991102116318	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTGTTGTTTTTTTAT	NA	False	NA	0	True	NA	NA	NA	100916930	100864084	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_100864860_100866425_100866526_100867180_100867280_100867583_100867685_100867831_100867940_100869833_100869958_100876620_100876703_100877612_100877734_100881217_100881327_100905188_100905303_100909132_100909190_100912227_100912297_100913908_100914029_100916721
transcript_97670.nnic	chr9	-	1010	7	NNC	ENSMUSG00000032527.14	novel	421	4	NA	NA	-70	1018	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	26.8369562771605	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGCCAGGTGCTGTGAT	NA	False	NA	NA	False	NA	NA	NA	100917021	100893007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_100893247_100894757_100894869_100905188_100905303_100909132_100909190_100912227_100912297_100913908_100914029_100916721
transcript_97672.known	chr9	-	4180	13	FSM	ENSMUSG00000032534.19	ENSMUST00000162655.9	4180	13	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_12	13.3260396717604	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGGTCTGTTGTCTAAAT	NA	False	NA	NA	False	AATATA	-21	NA	102503733	102461786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_102464212_102471706_102471794_102473320_102473519_102475367_102475483_102478515_102478654_102479616_102479748_102480040_102480275_102484524_102484639_102490493_102490617_102492473_102492570_102496009_102496188_102496890_102496960_102503461
transcript_97684.known	chr9	+	727	3	FSM	ENSMUSG00000035048.14	ENSMUST00000188398.7	727	3	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	699	2388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGTTTTCGTTTTGTTTT	NA	False	NA	25	True	AATAAA	-25	NA	102503522	102511449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_102503887_102506961_102507088_102511212
transcript_97685.known	chr9	+	595	3	FSM	ENSMUSG00000035048.14	ENSMUST00000186693.2	595	3	0	0	0	0	multi-exon	FALSE	canonical	2	118	junction_1	703	2419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCCCACTTGGTTTTCGT	NA	False	NA	17	True	AATAAA	-17	NA	102503877	102511441	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_102504118_102506961_102507088_102511212
transcript_97686.known	chr9	+	589	3	FSM	ENSMUSG00000035048.14	ENSMUST00000190279.7	589	3	0	0	0	0	multi-exon	TRUE	canonical	3	1105	junction_1	209.5	7710	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTTGCTTCTGTCAAAGT	NA	False	NA	NA	False	ATTAAA	-18	NA	102503494	102511624	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_102503546_102506961_102507088_102511212
transcript_97687.known	chr9	+	4328	10	FSM	ENSMUSG00000032531.16	ENSMUST00000035121.14	4328	10	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_1	19.0852538254079	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTCTGTCTGTCTATT	NA	False	NA	17	True	AATAAA	-20	NA	102594866	102610617	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_102595102_102597279_102598076_102600767_102601063_102601885_102602031_102602301_102602395_102605515_102605812_102606466_102606778_102607166_102607376_102607991_102608169_102608846
transcript_97688.known	chr9	+	2505	15	FSM	ENSMUSG00000032547.13	ENSMUST00000175883.8	2505	15	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_7	106.419462697461	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGCCCCCGCATGGAAAATC	NA	False	NA	65	True	NA	NA	NA	102712115	102784741	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_102712439_102739072_102739195_102744753_102744854_102746472_102746608_102748926_102748981_102752937_102753083_102758852_102758954_102763192_102763328_102765668_102765756_102768414_102768485_102774400_102774534_102775657_102775768_102775889_102776050_102783235_102783373_102784048
transcript_97689.known	chr9	+	2852	15	FSM	ENSMUSG00000032547.13	ENSMUST00000035142.8	2852	15	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_7	39.7877019252155	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTCACAGTGTGTGACTG	NA	False	NA	52	True	ATTAAA	-32	NA	102712170	102785152	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_102712439_102739072_102739195_102744753_102744854_102746472_102746608_102748926_102748981_102752937_102753083_102758852_102758954_102763201_102763328_102765668_102765756_102768414_102768485_102774400_102774534_102775657_102775768_102775889_102776050_102783235_102783373_102784048
transcript_97690.known	chr9	+	5007	8	FSM	ENSMUSG00000032549.8	ENSMUST00000035155.8	5007	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_5	2.35606035749581	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTTGTTGACTCTTTCT	233	False	NA	10	True	AATAAA	-23	NA	102989005	103062475	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_102989426_103017580_103017640_103038018_103038073_103038262_103038369_103039740_103039853_103041008_103041103_103044304_103044372_103058380
transcript_97692.known	chr9	-	3064	7	FSM	ENSMUSG00000032553.15	ENSMUST00000035157.10	3064	7	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_6	16.5873110807294	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTCTTTTATTTGG	NA	False	NA	NA	False	NA	NA	NA	103079336	103065230	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_103067621_103068267_103068323_103069411_103069549_103074736_103074820_103075987_103076066_103078485_103078581_103079110
transcript_97693.known	chr9	-	2571	17	FSM	ENSMUSG00000032554.16	ENSMUST00000035158.16	2571	17	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_12	9.88982273602515	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTCTCCTGAGCTCAAG	NA	False	NA	73	True	TATAAA	-6	NA	103107643	103085993	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_103086278_103087693_103087878_103089010_103089196_103092391_103092457_103093012_103093143_103094561_103094733_103096421_103096455_103097000_103097092_103098091_103098244_103099249_103099428_103100133_103100313_103100782_103100839_103102241_103102375_103103159_103103337_103104036_103104146_103105094_103105268_103107372
transcript_97696.known	chr9	-	2284	17	FSM	ENSMUSG00000033688.11	ENSMUST00000035163.10	2284	17	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.927024810886958	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGTGTTCTCAGATTTGA	NA	False	NA	NA	False	AATAAA	-23	NA	103165496	103127719	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_103127862_103128989_103129177_103131838_103132024_103133763_103133829_103136568_103136711_103140228_103140385_103143401_103143459_103144830_103144922_103145510_103145654_103146810_103146983_103149685_103149865_103152139_103152196_103154654_103154803_103156571_103156734_103158233_103158343_103159693_103159867_103165379
transcript_97698.known	chr9	+	769	1	FSM	ENSMUSG00000032555.11	ENSMUST00000189631.2	769	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAACCAAAAACCCTACA	969	False	NA	NA	False	NA	NA	NA	103182429	103183198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_103182400_103183200
transcript_97699.known	chr9	-	1023	5	FSM	ENSMUSG00000032803.16	ENSMUST00000189896.2	1023	5	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	184.859913177519	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATAAAGTGGGAAGAAA	NA	False	NA	NA	False	NA	NA	NA	103242818	103233148	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_103233226_103233478_103233639_103237074_103237218_103241173_103241251_103242252
transcript_9770.known	chr10	+	2968	3	FSM	ENSMUSG00000053684.9	ENSMUST00000136432.2	2968	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	61	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTTTTCTGGTCAAGCA	NA	False	NA	NA	False	AATAAA	-38	NA	121575842	121588783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_121576116_121581402_121581522_121586207
transcript_97700.known	chr9	-	3741	5	FSM	ENSMUSG00000032803.16	ENSMUST00000116517.9	3741	5	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_4	188.321533553654	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTGGAATGTGATGCTT	NA	False	NA	-8	True	AATAAA	-14	NA	103242096	103230302	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_103233229_103233478_103233639_103237074_103237218_103241173_103241251_103241661
transcript_97702.known	chr9	-	2145	6	FSM	ENSMUSG00000042757.17	ENSMUST00000189066.2	2145	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	9.53729521405309	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGTTGCACTGATTGCTTC	NA	False	NA	NA	False	AATAAA	-17	NA	103638993	103361634	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_103361983_103366387_103366543_103376000_103377408_103486909_103486992_103630053_103630167_103638953
transcript_97703.known	chr9	-	2850	6	FSM	ENSMUSG00000042757.17	ENSMUST00000189588.7	2850	6	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_4	14.324803663576	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAAAAATAAAAGATT	NA	False	NA	NA	False	ATTAAA	-6	NA	103639036	103360976	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_103361983_103366387_103366543_103376000_103377408_103486909_103486996_103630053_103630167_103638953
transcript_97709.known	chr9	-	1591	2	FSM	ENSMUSG00000042757.17	ENSMUST00000186455.3	1591	2	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	0	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103638989	103628611	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_103630167_103638953
transcript_97714.known	chr9	+	887	3	FSM	ENSMUSG00000086236.10	ENSMUST00000216140.2	887	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTCATTTATCCAGGTAT	NA	False	NA	NA	False	NA	NA	NA	103303866	103337647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_103304015_103305596_103305706_103337017
transcript_97716.known	chr9	+	3444	20	FSM	ENSMUSG00000090150.11	ENSMUST00000047799.13	3444	20	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_7	6.62112793865633	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTATTTTCAGTCCTAAA	NA	False	NA	92	True	NA	NA	NA	103940884	104004924	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_103941103_103950820_103950921_103953015_103953142_103953528_103953691_103955761_103955927_103958429_103958572_103958896_103959019_103959989_103960097_103961359_103961487_103967456_103967535_103968790_103968930_103972719_103972828_103974552_103974652_103990660_103990728_103991651_103991738_103992476_103992549_103993363_103993519_104000245_104000363_104001216_104001327_104003780
transcript_97723.known	chr9	-	2225	2	FSM	ENSMUSG00000079355.6	ENSMUST00000188000.2	2225	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCATCCTGTACTATCTCT	NA	False	NA	NA	False	TATAAA	-23	NA	103980218	103975470	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_103976955_103979477
transcript_97725.known	chr9	-	2404	12	FSM	ENSMUSG00000032557.14	ENSMUST00000035166.12	2404	12	0	0	0	0	multi-exon	FALSE	canonical	3	388	junction_1	40.2171790110061	387	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTGCTTTGAGATTCTAG	NA	False	NA	-13	True	AATAAA	-18	NA	103940333	103923797	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_103924886_103926432_103926540_103926721_103926801_103927033_103927170_103931261_103931390_103931552_103931658_103932388_103932474_103933001_103933089_103934072_103934183_103937416_103937507_103937592_103937639_103939990
transcript_97726.known	chr9	+	2030	14	FSM	ENSMUSG00000090150.11	ENSMUST00000189998.3	2030	14	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_13	13.3961047062859	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTTTCTCCATCTGCAA	NA	False	NA	NA	False	ATTAAA	-16	NA	103940931	103985208	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_103941103_103950820_103950921_103953015_103953142_103953528_103953691_103955761_103955927_103958429_103958572_103958896_103959019_103959989_103960097_103961359_103961487_103967456_103967535_103968790_103968930_103972719_103972828_103974552_103974652_103984824
transcript_97727.known	chr9	-	8012	56	FSM	ENSMUSG00000032560.15	ENSMUST00000035170.13	8012	56	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_37	31.3582656798217	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACTTGTCCATATCCTT	NA	False	NA	0	True	AATAAA	-16	NA	104140129	104028480	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_104029623_104034012_104034113_104037677_104037822_104039471_104039613_104039853_104040034_104042158_104042333_104042715_104042759_104042892_104043063_104044169_104044283_104044612_104044688_104047913_104048014_104049719_104049812_104051547_104051726_104052845_104052963_104053856_104053971_104056000_104056169_104057267_104057448_104058197_104058318_104059226_104059302_104059703_104059889_104061781_104061918_104063909_104063989_104064746_104064863_104066242_104066445_104067519_104067675_104069304_104069351_104069812_104069968_104073221_104073307_104074357_104074561_104075828_104075934_104077635_104077738_104079086_104079150_104080370_104080531_104080613_104080718_104084951_104085106_104086503_104086587_104089959_104090104_104091015_104091112_104091321_104091398_104092844_104092967_104094910_104094968_104095725_104095882_104097069_104097178_104098602_104098703_104105621_104105792_104105879_104105960_104106073_104106241_104107208_104107301_104107839_104107936_104108029_104108237_104110732_104110934_104114334_104114377_104114775_104114926_104115663_104115740_104123958_104124040_104139897
transcript_97729.known	chr9	-	568	4	FSM	ENSMUSG00000032560.15	ENSMUST00000189299.2	568	4	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_2	8.9566858950296	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCTCGAGACGGAGTTCC	NA	False	NA	NA	False	NA	NA	NA	104140102	104114719	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_104114926_104115663_104115740_104123958_104124040_104139897
transcript_9773.known	chr10	+	3123	3	FSM	ENSMUSG00000053684.9	ENSMUST00000065600.8	3123	3	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_1	1	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATGTATATATGGTTTTT	NA	False	NA	NA	False	AATAAA	-25	NA	121575841	121588770	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_121576116_121581235_121581522_121586207
transcript_97733.known	chr9	+	3972	10	FSM	ENSMUSG00000032563.17	ENSMUST00000035177.15	3972	10	0	0	0	0	multi-exon	FALSE	canonical	3	494	junction_1	31.6489229040682	1014	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCTCATCAAAGATGGTG	NA	False	NA	NA	False	AATAAA	-27	NA	104930437	104957087	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_104930712_104931619_104931805_104932793_104932886_104934223_104934323_104939097_104939198_104941262_104941324_104948574_104948684_104950973_104951052_104952360_104952439_104954191
transcript_97736.known	chr9	+	1394	10	FSM	ENSMUSG00000032563.17	ENSMUST00000142424.2	1394	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	174.559127200181	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGGTTGTGAAACAGAACC	NA	False	NA	20	True	ATTAAA	-17	NA	104930499	104954665	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_104930712_104931713_104931805_104932793_104932886_104934223_104934323_104939097_104939198_104941262_104941324_104948574_104948684_104950973_104951052_104952360_104952439_104954191
transcript_97738.known	chr9	+	2309	9	FSM	ENSMUSG00000032563.17	ENSMUST00000149243.8	2309	9	0	0	0	0	multi-exon	FALSE	canonical	3	494	junction_1	31.1879383736726	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTATGTCCTTTTTTGTG	NA	False	NA	NA	False	AATAAA	-2	NA	104930437	104953671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_104930712_104931619_104931805_104932793_104932886_104934223_104934323_104939097_104939198_104941262_104941324_104948574_104948684_104950973_104951052_104952360
transcript_97745.known	chr9	-	699	3	FSM	ENSMUSG00000032565.10	ENSMUST00000186925.2	699	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	12.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACTGTTTTCAACGGAACA	NA	False	NA	NA	False	TATAAA	-41	NA	105008972	105007405	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_105007710_105008491_105008756_105008841
transcript_97747.known	chr9	-	2147	1	FSM	ENSMUSG00000032565.10	ENSMUST00000186933.3	2147	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAACAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	105009018	105006871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_105006900_105009000
transcript_97748.known	chr9	-	1326	2	FSM	ENSMUSG00000032565.10	ENSMUST00000190375.2	1326	2	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAACAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	105008979	105006871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_105007710_105008491
transcript_97749.known	chr9	-	1449	4	FSM	ENSMUSG00000032570.18	ENSMUST00000176787.2	1449	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	180.31638860625	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAAAGAAAAACTAATTT	NA	False	NA	NA	False	ATTAAA	-41	NA	105372304	105346305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_105347347_105370741_105370754_105371613_105371797_105372091
transcript_97751.known	chr9	+	809	6	FSM	ENSMUSG00000032567.17	ENSMUST00000176350.5	809	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	25.0007999872004	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACGGAAGCCTGGTCCAC	NA	False	NA	NA	False	NA	NA	NA	105272687	105282202	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_105272865_105273743_105273905_105278674_105278886_105279916_105279976_105280594_105280791_105282197
transcript_97756.nic	chr9	+	2750	6	NIC	ENSMUSG00000032567.17	novel	2349	6	NA	NA	-38	0	intron_retention	FALSE	canonical	3	19	junction_1	19.6916225842362	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGTATTTATTTATATG	NA	False	NA	NA	False	AATACA	-16	NA	105272552	105282666	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_105273054_105273743_105275058_105278674_105278886_105279916_105279976_105280594_105280791_105282197
transcript_97758.known	chr9	+	2755	5	FSM	ENSMUSG00000032567.17	ENSMUST00000035181.10	2755	5	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_3	8.45576726264388	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTGGGTTTTTTTAAAT	NA	False	NA	NA	False	CATAAA	-29	NA	105272590	105282957	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_105272865_105273743_105275058_105278674_105278886_105280594_105280791_105282197
transcript_97764.known	chr9	-	391	1	FSM	ENSMUSG00000101464.2	ENSMUST00000187229.2	391	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTGTGGGGTCTGATGC	5264	False	NA	NA	False	NA	NA	NA	105423026	105422635	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_105422600_105423000
transcript_97765.known	chr9	+	4711	20	FSM	ENSMUSG00000032571.15	ENSMUST00000065778.13	4711	20	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_1	21.4158146964708	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGGATTTTTTTGGAGAA	NA	False	NA	32	True	AGTAAA	-23	NA	105520368	105564856	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_105520590_105521394_105522169_105525864_105525999_105527515_105528099_105531150_105531286_105532014_105532237_105535617_105535792_105538535_105538682_105540240_105540445_105544930_105545133_105546184_105546373_105546944_105547156_105549842_105550009_105553941_105554107_105555307_105555520_105559383_105559516_105562329_105562431_105563332_105563422_105563544_105563654_105564313
transcript_97769.known	chr9	+	3747	9	FSM	ENSMUSG00000020257.14	ENSMUST00000020490.13	3747	9	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_3	24.1958157539687	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCATTGAGTTTCTGTA	NA	False	NA	54	True	NA	NA	NA	106048126	106068338	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_106048579_106053811_106053910_106057764_106057832_106060814_106060915_106061378_106061496_106061881_106062038_106062447_106062518_106063568_106063712_106065794
transcript_97775.known	chr9	+	1596	9	FSM	ENSMUSG00000023277.14	ENSMUST00000024047.12	1596	9	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_8	33.0111250186963	944	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGAGCCTGGGTGCCTTT	NA	False	NA	19	True	AATAAA	-16	NA	106080306	106092588	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_106080484_106084087_106084166_106088917_106089097_106089454_106089551_106089930_106090036_106090136_106090263_106091299_106091451_106091554_106091677_106092026
transcript_97776.known	chr9	+	1508	8	FSM	ENSMUSG00000023277.14	ENSMUST00000188650.2	1508	8	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_7	32.5701754144894	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACTGAGCCTGGGTGCCT	NA	False	NA	17	True	AATAAA	-14	NA	106083996	106092586	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_106084166_106088917_106089097_106089454_106089551_106089930_106090036_106090136_106090263_106091299_106091451_106091554_106091677_106092026
transcript_97778.known	chr9	-	3399	11	FSM	ENSMUSG00000032786.17	ENSMUST00000141118.9	3399	11	0	0	0	0	multi-exon	TRUE	canonical	3	139	junction_7	18.0612845611822	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCCTTGTCTTGTTATGA	7778	False	NA	NA	False	NA	NA	NA	106125853	106110656	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_106111397_106112586_106112750_106113638_106113908_106115273_106115439_106115841_106116022_106116730_106116916_106118314_106118538_106118834_106118985_106120360_106120595_106123957_106124178_106124983
transcript_97781.nic	chr9	-	1011	4	ISM	ENSMUSG00000032786.17	ENSMUST00000219340.2	1718	5	-65	1069	-65	-192	5prime_fragment	FALSE	canonical	3	175	junction_2	7.48331477354788	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAACAAAAACAAACTCTC	8497	False	NA	NA	False	NA	NA	NA	106125134	106118578	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_-_106118985_106120360_106120595_106123957_106124178_106124983
transcript_97782.known	chr9	-	2129	11	FSM	ENSMUSG00000032786.17	ENSMUST00000074082.13	2129	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	54.5879107495423	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATAGTCCTGGTTAGTGTG	8576	False	NA	-14	True	AATAAA	-31	NA	106125055	106111125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_106111397_106112586_106112750_106113638_106113908_106115273_106115436_106115841_106116022_106116730_106116916_106118314_106118538_106118834_106118985_106120360_106120595_106123957_106124178_106124983
transcript_97783.known	chr9	-	1718	5	FSM	ENSMUSG00000032786.17	ENSMUST00000219340.2	1718	5	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	20.9463600656534	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTGAGTTGTCTTGCTTGC	8562	False	NA	NA	False	AAAAAG	-3	NA	106125069	106117509	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_106118538_106118834_106118985_106120360_106120595_106123957_106124178_106124983
transcript_97786.known	chr9	+	2337	11	FSM	ENSMUSG00000023345.18	ENSMUST00000072206.14	2337	11	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_9	19.0265603827912	775	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTGCTTTGCCTGATCTT	9557	False	NA	22	True	AGTAAA	-16	NA	106158259	106227720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_106158656_106160050_106160136_106162079_106162252_106162591_106162772_106163978_106164087_106165189_106165306_106172339_106172474_106182463_106182533_106185139_106185233_106207071_106207216_106226880
transcript_97787.nic	chr9	+	1698	11	NIC	ENSMUSG00000023345.18	novel	2337	11	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_9	88.6248272212702	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGCCACATCTTACCCAG	9524	False	NA	7	True	AATAAA	-19	NA	106158226	106227076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_106158656_106160050_106160136_106162079_106162252_106162591_106162772_106163978_106164087_106165189_106165306_106172339_106172474_106182463_106182533_106185139_106185233_106207099_106207216_106226880
transcript_9779.nic	chr10	-	1630	6	NIC	ENSMUSG00000034620.18	novel	1546	7	NA	NA	-65	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_5	112.932546238894	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGTATTCATAAGTGTAA	NA	False	NA	-10	True	AATAAA	-19	NA	121933126	121917164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_-_121917595_121924783_121924955_121926364_121926680_121930494_121930598_121931843_121932133_121932804
transcript_97791.known	chr9	+	1242	10	FSM	ENSMUSG00000023345.18	ENSMUST00000191434.2	1242	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	133.805644938037	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGTCTGGGATTGGGTGC	9876	False	NA	22	True	AATAAA	-34	NA	106158578	106227091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_106158656_106160053_106160136_106162079_106162252_106162591_106162772_106163978_106164087_106165189_106165306_106172339_106172474_106182463_106182533_106185139_106185233_106226880
transcript_97797.known	chr9	+	1521	6	FSM	ENSMUSG00000023345.18	ENSMUST00000188660.7	1521	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	130.207526664168	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTGCTTTGCCTGATCTT	2034	False	NA	22	True	AGTAAA	-16	NA	106168037	106227720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_106168279_106172339_106172474_106182463_106182533_106185139_106185233_106207071_106207216_106226880
transcript_9780.known	chr10	-	1546	7	FSM	ENSMUSG00000034620.18	ENSMUST00000038772.13	1546	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	137.068920214937	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGTATTCATAAGTGTAA	NA	False	NA	-10	True	AATAAA	-19	NA	121933061	121917164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_121917595_121924783_121924955_121926364_121926680_121930494_121930598_121931843_121932000_121932252_121932367_121932804
transcript_97800.known	chr9	+	583	4	FSM	ENSMUSG00000048758.15	ENSMUST00000098994.7	583	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	2179.51131117862	1361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGCAGATGACCAGTGTC	NA	False	NA	-57	True	NA	NA	NA	106306736	106308707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_106306776_106307174_106307214_106307506_106307572_106308267
transcript_97803.known	chr9	+	710	4	FSM	ENSMUSG00000048758.15	ENSMUST00000059802.7	710	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2185.50085792708	4877	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGTGTCTGTTGTCATA	NA	False	NA	2	True	AATAAA	-18	NA	106306737	106308766	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_106306839_106307168_106307214_106307506_106307572_106308267
transcript_97804.known	chr9	+	466	4	FSM	ENSMUSG00000048758.15	ENSMUST00000217081.2	466	4	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	2158.78427721613	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGCCATCAAGGCCCTGG	NA	False	NA	NA	False	NA	NA	NA	106306760	106308371	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_106307013_106307168_106307214_106307506_106307572_106308267
transcript_97807.known	chr9	+	845	3	FSM	ENSMUSG00000048758.15	ENSMUST00000213448.2	845	3	0	0	0	0	multi-exon	FALSE	canonical	3	3966	junction_1	565.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGGCTCCCAAAGGTGCTC	NA	False	NA	NA	False	NA	NA	NA	106306753	106308587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_106307214_106307506_106307572_106308267
transcript_9781.known	chr10	+	6369	10	FSM	ENSMUSG00000034613.13	ENSMUST00000067918.12	6369	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.6428327977153	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTTTGGGTTTTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	122514686	122781700	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_122515336_122618087_122618251_122638139_122638485_122647351_122647465_122692966_122693052_122714413_122714533_122739996_122740061_122743411_122743520_122756598_122756751_122777129
transcript_97811.nic	chr9	-	1643	15	NIC	ENSMUSG00000023262.14	novel	1529	15	NA	NA	-127	0	combination_of_known_junctions	FALSE	canonical	3	284	junction_14	59.3909565025326	989	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCTTAATACTGTGGACA	NA	False	NA	-16	True	AATAAA	-18	NA	106315645	106310188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106313420_106313894_106314000_106314087_106314153_106314827_106314933_106315331
transcript_97817.known	chr9	-	1832	14	FSM	ENSMUSG00000023262.14	ENSMUST00000187324.8	1832	14	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_13	61.5898823628318	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTCTTAATACTGTGGAC	NA	False	NA	-17	True	AATAAA	-17	NA	106315360	106310189	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106314000_106314087_106314153_106314827_106314933_106315331
transcript_97826.known	chr9	-	1467	14	FSM	ENSMUSG00000023262.14	ENSMUST00000190851.3	1467	14	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_13	60.7556946949817	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGTGGACAGTCATGGAA	NA	False	NA	-7	True	AATAAA	-27	NA	106315374	106310179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106313420_106313894_106314000_106314087_106314153_106314827_106314933_106315331
transcript_9784.known	chr10	-	9301	36	FSM	ENSMUSG00000034602.16	ENSMUST00000073792.11	9301	36	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	46.8143881597903	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTAGAGTGGTGCTTTTAT	NA	False	NA	NA	False	ATTAAA	-18	NA	122912410	122827964	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_122831739_122835563_122835647_122838600_122838809_122841916_122842041_122842876_122842938_122844040_122844232_122845407_122845537_122845817_122845836_122846398_122846543_122849272_122849896_122850845_122851045_122852167_122852462_122853979_122854143_122856208_122856385_122858738_122858850_122858990_122858994_122859814_122859917_122861984_122862076_122862158_122862233_122862311_122862393_122862813_122862919_122865037_122865151_122866014_122866200_122866944_122867027_122868427_122868655_122870209_122870364_122871372_122871510_122871916_122872042_122874365_122874561_122878135_122878262_122878879_122878975_122882202_122882333_122887541_122887674_122888089_122888218_122895092_122895157_122911756
transcript_97843.known	chr9	-	1529	15	FSM	ENSMUSG00000023262.14	ENSMUST00000024031.13	1529	15	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_14	78.143510052117	1618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGTGGACAGTCATGGAA	NA	False	NA	-7	True	AATAAA	-27	NA	106315518	106310179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106313420_106313894_106314000_106314087_106314153_106314827_106314937_106315331
transcript_97844.known	chr9	-	1284	14	FSM	ENSMUSG00000023262.14	ENSMUST00000214275.2	1284	14	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_11	137.635441630778	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCTTAATACTGTGGACA	NA	False	NA	-16	True	AATAAA	-18	NA	106315387	106310188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106313420_106314087_106314153_106314827_106314937_106315331
transcript_97852.known	chr9	-	1256	7	FSM	ENSMUSG00000042210.18	ENSMUST00000048685.13	1256	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	104.56165113888	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACGTTGTGTTTCCTGAC	NA	False	NA	1	True	AATAAA	-28	NA	106324877	106317249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_106317604_106317819_106318056_106321025_106321142_106321288_106321506_106322724_106322851_106322969_106323029_106324729
transcript_97853.known	chr9	-	1109	7	FSM	ENSMUSG00000042210.18	ENSMUST00000185334.7	1109	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	116.104837682731	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTTGTATTTCATTTCAC	NA	False	NA	-58	True	NA	NA	NA	106324642	106317308	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_106317604_106317819_106318056_106321025_106321142_106321288_106321506_106322724_106322856_106322969_106323029_106324587
transcript_97854.nic	chr9	-	1335	7	NIC	ENSMUSG00000042210.18	novel	1262	6	NA	NA	-72	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	104.893067242576	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTGACGTTGTGTTTCCT	NA	False	NA	-2	True	AATAAA	-25	NA	106324949	106317252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_106317604_106317819_106318056_106321025_106321142_106321288_106321506_106322724_106322856_106322969_106323034_106324729
transcript_97858.nic	chr9	-	1310	7	NIC	ENSMUSG00000042210.18	novel	1262	6	NA	NA	7	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_2	104.893067242576	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTGACGTTGTGTTTCCT	NA	False	NA	-2	True	AATAAA	-25	NA	106324870	106317252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_106317604_106317819_106318110_106321025_106321142_106321288_106321506_106322724_106322856_106322969_106323034_106324729
transcript_97864.known	chr9	-	1122	5	FSM	ENSMUSG00000042210.18	ENSMUST00000171925.8	1122	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	116.405272646904	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTGACGTTGTGTTTCCT	NA	False	NA	-2	True	AATAAA	-25	NA	106324877	106317252	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_106317604_106317819_106318110_106321025_106321142_106321288_106321506_106324729
transcript_97868.known	chr9	+	1745	4	FSM	ENSMUSG00000042073.16	ENSMUST00000048527.15	1745	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.4142135623731	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCTTTTGCTGTCTCCGG	NA	False	NA	13	True	AATAAA	-20	NA	106325573	106330122	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_106325909_106327202_106327431_106328591_106328834_106329182
transcript_9787.known	chr10	-	11525	22	FSM	ENSMUSG00000020124.11	ENSMUST00000220377.2	11525	22	0	0	0	0	multi-exon	TRUE	canonical	3	236	junction_15	99.6636747895759	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGCTATATCTGTACATTTA	NA	False	NA	NA	False	AATAAA	-29	NA	123032900	122940910	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_122949593_122955013_122955103_122957476_122957581_122959840_122959991_122960418_122960535_122960868_122960940_122961317_122961591_122961716_122961833_122963582_122963775_122963868_122963964_122964053_122964138_122966845_122967071_122967156_122967316_122968860_122969035_122982698_122982844_122988945_122989033_122999497_122999560_123004131_123004278_123007004_123007132_123011747_123011879_123017577_123017706_123032731
transcript_97876.known	chr9	+	2035	13	FSM	ENSMUSG00000023495.14	ENSMUST00000024260.14	2035	13	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_11	32.902212016148	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGCAGTAATACTAGTG	1600	False	NA	27	True	AATAAA	-20	NA	106331040	106341211	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_106331207_106337203_106337349_106337474_106337499_106337595_106337629_106337849_106337967_106338191_106338324_106338463_106338593_106339047_106339123_106339267_106339313_106339387_106339452_106339560_106339614_106339706_106339877_106340329
transcript_97877.nic	chr9	+	1861	13	NIC	ENSMUSG00000023495.14	novel	2035	13	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_12	99.8749217771909	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGCAGTAATACTAGTG	1577	False	NA	27	True	AATAAA	-20	NA	106331017	106341211	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_106331207_106337203_106337349_106337474_106337499_106337595_106337629_106337849_106337967_106338191_106338324_106338463_106338593_106339047_106339123_106339267_106339313_106339387_106339452_106339560_106339614_106339706_106339877_106340526
transcript_9788.known	chr10	-	4666	21	FSM	ENSMUSG00000020124.11	ENSMUST00000020334.9	4666	21	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_15	80.7788802843912	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAGTCTTTTATTTCTTA	NA	False	NA	-1	True	AATAAA	-16	NA	123032858	122947640	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_122949593_122955013_122955103_122957476_122957581_122959840_122959991_122960418_122960535_122960868_122960940_122961317_122961591_122961716_122961833_122963582_122963775_122963868_122963964_122964053_122964138_122966845_122967071_122967156_122967316_122968860_122969035_122982698_122982844_122999497_122999560_123004131_123004278_123007004_123007132_123011747_123011879_123017577_123017706_123032731
transcript_97881.nnic	chr9	+	2192	13	NIC	ENSMUSG00000023495.14	novel	968	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_1	105.724484707501	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGCAGTAATACTAGTG	3442	False	NA	27	True	AATAAA	-20	NA	106332882	106341211	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_106333206_106337203_106337349_106337474_106337499_106337595_106337629_106337849_106337967_106338191_106338324_106338463_106338593_106339047_106339123_106339267_106339313_106339387_106339452_106339560_106339614_106339706_106339877_106340329
transcript_97890.known	chr9	-	2030	11	FSM	ENSMUSG00000023249.16	ENSMUST00000112479.9	2030	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	3.2	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAACGTTTTGAAGCAGG	NA	False	NA	NA	False	NA	NA	NA	106353868	106348187	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_106348602_106348958_106349115_106350227_106350406_106350631_106350719_106350879_106351033_106351256_106351484_106351595_106351735_106351878_106352068_106352221_106352348_106352997_106353182_106353691
transcript_97896.known	chr9	-	667	2	FSM	ENSMUSG00000023249.16	ENSMUST00000139362.2	667	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCCAAATAACGTTTTGA	NA	False	NA	NA	False	NA	NA	NA	106349217	106348193	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_106348602_106348958
transcript_97898.known	chr9	+	1586	15	FSM	ENSMUSG00000041506.16	ENSMUST00000047721.10	1586	15	0	0	0	0	multi-exon	FALSE	canonical	3	1203	junction_11	74.9465115388084	5949	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTTGTTCCTCTGGTTT	NA	False	NA	23	True	ATTAAA	-23	NA	106354467	106362623	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_106354634_106354869_106354953_106357894_106358005_106358354_106358423_106358511_106358554_106358958_106359086_106360110_106360236_106360317_106360411_106360755_106360857_106360945_106361081_106361164_106361228_106361409_106361556_106361638_106361719_106362275_106362350_106362450
transcript_97899.known	chr9	+	1611	14	FSM	ENSMUSG00000041506.16	ENSMUST00000125630.8	1611	14	0	0	0	0	multi-exon	FALSE	canonical	3	1203	junction_10	77.2574272104087	950	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTGTTCTCCCTTGTTCC	NA	False	NA	15	True	ATTAAA	-15	NA	106354516	106362615	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_106354634_106354869_106354953_106357894_106358005_106358354_106358423_106358511_106358554_106358958_106359086_106360110_106360411_106360755_106360857_106360945_106361081_106361164_106361228_106361409_106361556_106361638_106361719_106362275_106362350_106362450
transcript_979.known	chr1	-	741	3	FSM	ENSMUSG00000025930.7	ENSMUST00000190719.2	741	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	0.5	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAACTCCAGGTGCTGGTTT	NA	False	NA	NA	False	NA	NA	NA	14825577	14823969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_14824550_14824729_14824767_14825453
transcript_97900.known	chr9	-	4711	6	FSM	ENSMUSG00000023192.13	ENSMUST00000023959.13	4711	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2.22710574513201	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGTGGGAATAAAGACA	NA	False	NA	NA	False	NA	NA	NA	106533279	106520315	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_106522291_106522495_106522677_106524349_106525426_106527594_106528433_106531037_106531624_106533224
transcript_97903.known	chr9	-	1896	6	FSM	ENSMUSG00000040813.17	ENSMUST00000163441.8	1896	6	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_5	161.744242555956	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTTGGTTTTTGTCTG	7972	False	NA	0	True	AATAAA	-28	NA	106563022	106535944	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_106536507_106539558_106539728_106550715_106550938_106559066_106559363_106562127_106562195_106562442
transcript_97904.known	chr9	-	1364	6	FSM	ENSMUSG00000040813.17	ENSMUST00000169068.8	1364	6	0	0	0	0	multi-exon	TRUE	canonical	3	151	junction_5	120.179865202121	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTTGGTTTTTGTCTG	8113	False	NA	0	True	AATAAA	-28	NA	106562881	106535944	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_106536507_106539558_106539728_106550715_106550938_106559066_106559363_106562127_106562195_106562833
transcript_97905.known	chr9	-	1391	6	FSM	ENSMUSG00000040813.17	ENSMUST00000046735.11	1391	6	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_5	67.9187750183997	531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGATTTGAGTTGGTTTT	7880	False	NA	-6	True	AATAAA	-22	NA	106563114	106535950	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_106536507_106539558_106539728_106550715_106550938_106559066_106559363_106562127_106562195_106563033
transcript_9791.known	chr10	-	2840	6	FSM	ENSMUSG00000020124.11	ENSMUST00000219010.2	2840	6	0	0	0	0	multi-exon	FALSE	canonical	3	512	junction_5	37.9968419740378	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGGAGAAAAGAGAAGGGAG	NA	False	NA	NA	False	NA	NA	NA	123032831	122997351	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_122999560_123004131_123004278_123007004_123007132_123011747_123011879_123017577_123017706_123032731
transcript_97911.known	chr9	-	822	5	FSM	ENSMUSG00000040813.17	ENSMUST00000188892.7	822	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	202.069758994264	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTTTCTCCTGGGGCAGG	7868	False	NA	NA	False	NA	NA	NA	106563126	106536435	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_106536507_106539558_106539728_106550715_106550938_106562127_106562195_106562833
transcript_97914.known	chr9	-	9305	22	FSM	ENSMUSG00000040661.7	ENSMUST00000046502.7	9305	22	0	0	0	0	multi-exon	TRUE	canonical	3	17	junction_10	7.57277616039918	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATGTTTGGTCAAGAAAT	7295	False	NA	-2	True	AATAAA	-11	NA	106666393	106565280	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_106570910_106573070_106573164_106575316_106575407_106577693_106577894_106579843_106580041_106580690_106580864_106581263_106581470_106582966_106583067_106585413_106585533_106587532_106587652_106587866_106588119_106589530_106589709_106590442_106590786_106593259_106593457_106594384_106594519_106594947_106595131_106596111_106596339_106596806_106596924_106597523_106597664_106599914_106600114_106631143_106631338_106666178
transcript_97919.known	chr9	+	4945	23	FSM	ENSMUSG00000040325.17	ENSMUST00000159645.8	4945	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_22	85.1436802175695	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACCAGGCATTTCTAACGA	NA	False	NA	NA	False	TATAAA	-21	NA	106699072	106757642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_106699291_106706259_106706378_106708056_106708134_106711347_106711422_106712714_106712829_106713759_106713898_106715397_106715908_106716230_106716333_106721334_106721494_106723857_106724038_106724979_106725190_106729136_106729307_106731368_106731494_106735022_106736287_106736779_106736979_106737577_106737661_106738166_106738252_106740215_106740450_106740848_106740943_106741714_106741820_106742229_106742304_106742796_106742899_106757132
transcript_97922.nnic	chr9	-	2795	12	NNC	ENSMUSG00000032577.17	novel	2816	11	NA	NA	-25	1	at_least_one_novel_splicesite	TRUE	canonical	3	142	junction_1	26.8365114556165	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAATGATTCCTGGGTTTC	NA	False	NA	-9	True	AATAAA	-17	NA	107167101	107132132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_107132548_107132586_107133535_107134260_107134342_107134613_107134700_107135528_107135654_107136012_107136089_107137243_107137368_107139076_107139157_107139621_107139687_107140823_107140964_107166318_107166596_107166723
transcript_97923.known	chr9	-	2816	11	FSM	ENSMUSG00000032577.17	ENSMUST00000035194.8	2816	11	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_10	23.3752005338992	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCCTGGGTTTCTTTATGT	NA	False	NA	-2	True	AATAAA	-24	NA	107167076	107132125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_107133535_107134260_107134342_107134613_107134700_107135528_107135654_107136012_107136089_107137243_107137368_107139076_107139157_107139621_107139687_107140823_107140964_107166318_107166596_107166723
transcript_97928.known	chr9	-	1000	3	FSM	ENSMUSG00000032577.17	ENSMUST00000141596.2	1000	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	78.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTTGGCTGGGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	107166978	107161872	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_107162341_107166318_107166596_107166723
transcript_97929.nic	chr9	-	699	2	ISM	ENSMUSG00000032577.17	ENSMUST00000141596.2	1000	3	-60	4339	38	-4339	5prime_fragment	FALSE	canonical	3	157	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTTTTATTTTCAAACT	NA	False	NA	NA	False	ATTAAA	-16	NA	107167038	107166211	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_-_107166596_107166723
transcript_97930.known	chr9	+	2850	3	FSM	ENSMUSG00000032578.8	ENSMUST00000085102.6	2850	3	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	1	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCGCGTGGTTTGACCTC	NA	False	NA	NA	False	AATAAA	-43	NA	107173224	107179186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_107174234_107177122_107177344_107177566
transcript_97931.known	chr9	+	2742	2	FSM	ENSMUSG00000032578.8	ENSMUST00000168260.2	2742	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATAAATAAACAACC	NA	False	NA	NA	False	NA	NA	NA	107173908	107179983	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_107174234_107177566
transcript_97940.known	chr9	-	2192	11	FSM	ENSMUSG00000032579.15	ENSMUST00000035196.14	2192	11	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_9	21.6296093353532	732	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGACTGCCTCTTTTCACG	NA	False	NA	NA	False	NA	NA	NA	107215549	107204282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_107205272_107205374_107205489_107205633_107205730_107206522_107206632_107207971_107208022_107208289_107208355_107208643_107208779_107213377_107213472_107213770_107213863_107214199_107214578_107215479
transcript_97950.nnic	chr9	-	1191	10	NIC	ENSMUSG00000032579.15	novel	2192	11	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	3	10	junction_9	55.2618905142583	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAATAAATGGTGAGCCAG	NA	False	NA	-32	True	AGTAAA	-11	NA	107215554	107204910	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_107205272_107205374_107205489_107205633_107205730_107206522_107206632_107207971_107208022_107208289_107208355_107208643_107208779_107213377_107213472_107213770_107213863_107215479
transcript_9796.known	chr10	-	1587	9	FSM	ENSMUSG00000020124.11	ENSMUST00000219937.2	1587	9	0	0	0	0	multi-exon	FALSE	canonical	3	490	junction_8	53.0023584380922	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTTTTCTTTAATTTTT	NA	False	NA	2	True	AATAAA	-32	NA	122963790	122949132	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_122949593_122955013_122955103_122957476_122957581_122959840_122959991_122960418_122960535_122960868_122960940_122961317_122961591_122961716_122961833_122963582
transcript_9797.known	chr10	-	1477	7	FSM	ENSMUSG00000020124.11	ENSMUST00000220284.2	1477	7	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_1	121.767538093423	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGGGAAAAAGAAAAAAAATT	NA	False	NA	NA	False	AAAACA	-18	NA	123032846	122988264	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_122989033_122999497_122999560_123004131_123004278_123007004_123007132_123011747_123011879_123017577_123017706_123032731
transcript_97973.known	chr9	-	1888	10	FSM	ENSMUSG00000032579.15	ENSMUST00000148165.7	1888	10	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_9	18.5818177425483	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTGTTATTAACATTCA	NA	False	NA	-12	True	AATAAA	-12	NA	107215516	107204890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_107205272_107205374_107205489_107205633_107205730_107206522_107206632_107207971_107208022_107208289_107208355_107208643_107208779_107213377_107213472_107213770_107214578_107215479
transcript_97974.known	chr9	+	2599	6	FSM	ENSMUSG00000037977.7	ENSMUST00000042581.4	2599	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1.32664991614216	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGGAGTCTGTGACACTT	NA	False	NA	NA	False	ATTAAA	-28	NA	107217800	107226891	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_107217988_107218509_107218617_107219405_107219789_107223344_107223371_107224016_107224165_107225143
transcript_97977.known	chr9	+	2194	2	FSM	ENSMUSG00000010045.3	ENSMUST00000010189.3	2194	2	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	0	197	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTTGTGCAGCCCTCTC	NA	False	NA	33	True	AATAAA	-38	NA	107411143	107415872	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_107412529_107415063
transcript_97979.known	chr9	-	1162	4	FSM	ENSMUSG00000037190.13	ENSMUST00000195235.6	1162	4	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_2	4.08248290463863	560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTCGGGAGGAGCAGCGC	NA	False	NA	-20	True	AATAAA	-19	NA	107419392	107416773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_107417585_107418201_107418240_107418695_107418850_107419233
transcript_9798.known	chr10	+	4016	19	FSM	ENSMUSG00000020105.10	ENSMUST00000074807.8	4016	19	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_3	15.6639083466215	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATAGTCTCCAATGCATT	NA	False	NA	NA	False	AATAAA	-34	NA	125802121	125851228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_125802581_125807989_125808062_125808261_125808337_125830286_125830419_125831302_125831447_125832483_125832628_125832930_125833075_125833472_125833617_125834818_125834900_125835957_125836030_125838269_125838342_125838810_125838975_125842556_125842878_125844338_125844621_125845655_125846109_125846769_125846929_125848878_125849023_125849120_125849391_125850544
transcript_97980.known	chr9	-	658	4	FSM	ENSMUSG00000037190.13	ENSMUST00000194967.2	658	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	45.536310297998	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGCCAGCCTCCTGTTGG	NA	False	NA	NA	False	NA	NA	NA	107419326	107417240	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_107417585_107418201_107418269_107418695_107418850_107419233
transcript_97981.known	chr9	-	637	3	FSM	ENSMUSG00000037190.13	ENSMUST00000194906.2	637	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	54	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAGTTATTACGAAGGCT	NA	False	NA	NA	False	NA	NA	NA	107419323	107417075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_107417585_107418201_107418240_107419233
transcript_97983.known	chr9	-	1786	3	FSM	ENSMUSG00000037190.13	ENSMUST00000041459.9	1786	3	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_2	5	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTATGCCTTCAGCGCCT	NA	False	NA	NA	False	NA	NA	NA	107419064	107416205	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_107417585_107418201_107418240_107418695
transcript_97984.known	chr9	+	1441	11	FSM	ENSMUSG00000010057.9	ENSMUST00000010201.9	1441	11	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_4	11.6721891691319	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGAGTACTGCTTCAGCC	NA	False	NA	13	True	AATAAA	-24	NA	107419424	107422905	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_107419653_107420180_107420273_107420366_107420536_107420705_107420815_107421349_107421487_107421578_107421677_107421796_107421834_107421945_107422040_107422112_107422231_107422443_107422587_107422689
transcript_9799.known	chr10	-	903	6	FSM	ENSMUSG00000025436.13	ENSMUST00000026504.13	903	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	67.2767418949521	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTGTTTGACACATTACT	NA	False	NA	-26	True	AATAAA	-19	NA	126737224	126704295	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_126704595_126727508_126727593_126730093_126730232_126734755_126734838_126735449_126735496_126736970
transcript_97991.known	chr9	+	1736	9	FSM	ENSMUSG00000010057.9	ENSMUST00000193628.6	1736	9	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_4	11.1235954169504	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTGTGGAATATTGAGTA	NA	False	NA	2	True	AATAAA	-13	NA	107419443	107422894	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_107419653_107420180_107420273_107420366_107420536_107420705_107420815_107421349_107421487_107421578_107421677_107421796_107422040_107422112_107422587_107422689
transcript_97993.known	chr9	+	1765	12	FSM	ENSMUSG00000010044.13	ENSMUST00000010188.9	1765	12	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	1.82725011293107	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGTGTGGCGCTGTACAG	NA	False	NA	NA	False	AATAAA	-18	NA	107424496	107428518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_107424748_107424998_107425108_107425868_107425986_107426078_107426133_107426226_107426365_107426478_107426568_107426664_107426766_107427073_107427247_107427482_107427609_107427696_107427819_107427938_107428065_107428159
transcript_97994.known	chr9	+	1787	6	FSM	ENSMUSG00000010067.14	ENSMUST00000093786.9	1787	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	27.6723688902848	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGGACTCTATAGATGTG	NA	False	NA	13	True	AATAAA	-20	NA	107428753	107439466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_107429046_107431336_107431444_107434651_107434757_107434968_107435267_107435385_107435502_107438597
transcript_97995.known	chr9	+	1727	5	FSM	ENSMUSG00000010067.14	ENSMUST00000010211.7	1727	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_4	9.63068014212911	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTTTTGGACTCTATAGA	NA	False	NA	9	True	AATAAA	-16	NA	107431781	107439462	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_107432125_107434651_107434757_107434968_107435267_107435385_107435502_107438597
transcript_97998.known	chr9	+	1893	4	FSM	ENSMUSG00000010047.13	ENSMUST00000010191.13	1893	4	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_3	7.31816613336672	335	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTCTTGTCTTTTTCTGC	NA	False	NA	15	True	ATTAAA	-17	NA	107446315	107449975	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_107446433_107447302_107448270_107448690_107448781_107449256
transcript_980.known	chr1	-	1741	2	FSM	ENSMUSG00000025930.7	ENSMUST00000027062.7	1741	2	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGCATTGTAAAAGTTCTT	NA	False	NA	4	True	AATAAA	-21	NA	14826214	14823569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_14824550_14825453
transcript_9800.known	chr10	-	1043	6	FSM	ENSMUSG00000025436.13	ENSMUST00000168520.3	1043	6	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	12.3515181253156	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTATTTTTTGGCTCTT	NA	False	NA	0	True	AATAAA	-25	NA	126737217	126723117	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_126723564_126727508_126727593_126730093_126730232_126734755_126734838_126735449_126735496_126736970
transcript_98000.known	chr9	+	1665	3	FSM	ENSMUSG00000010054.5	ENSMUST00000010198.5	1665	3	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_1	4.5	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGAGAGTGGCGTCCAGTG	NA	False	NA	20	True	AATAAA	-21	NA	107440453	107443311	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_107440732_107441774_107441896_107442045
transcript_98003.known	chr9	+	2706	5	FSM	ENSMUSG00000010051.16	ENSMUST00000112387.9	2706	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	13.6450540489952	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAACAGTGCAGT	NA	False	NA	NA	False	NA	NA	NA	107454125	107458909	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_107454278_107454751_107455676_107456079_107456170_107456298_107456585_107457655
transcript_98006.known	chr9	+	3014	4	FSM	ENSMUSG00000010051.16	ENSMUST00000010195.14	3014	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	10.4029910228848	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCGCCTGTGGTCCCCAA	NA	False	NA	31	True	NA	NA	NA	107454156	107458177	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_107454278_107454751_107455676_107456079_107456170_107456298
transcript_98009.nnic	chr9	+	1145	3	NIC	ENSMUSG00000036091.9	novel	1380	4	NA	NA	-152	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	3.5	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTCCTCACCATTCTAT	NA	False	NA	17	True	CATAAA	-22	NA	107457864	107464558	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_107458135_107463580_107463671_107463773
transcript_98016.known	chr9	+	2053	2	FSM	ENSMUSG00000079334.9	ENSMUST00000093785.6	2053	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGACAGTTTATTGGTT	NA	False	NA	12	True	AATAAA	-18	NA	107457315	107461249	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_107458135_107460015
transcript_98021.known	chr9	+	2056	12	FSM	ENSMUSG00000010048.11	ENSMUST00000010192.11	2056	12	0	0	0	0	multi-exon	TRUE	canonical	3	631	junction_11	35.5716016363504	1785	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCCTTTATCCTGAGTC	NA	False	NA	21	True	ATTAAA	-33	NA	107464840	107470237	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_107465146_107467101_107467222_107467307_107467393_107467496_107467622_107467703_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469403_107469474_107469571_107469673
transcript_98030.known	chr9	+	2054	11	FSM	ENSMUSG00000010048.11	ENSMUST00000194932.6	2054	11	0	0	0	0	multi-exon	FALSE	canonical	3	631	junction_10	36.8511872264653	759	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCCTTTATCCTGAGTC	NA	False	NA	21	True	ATTAAA	-33	NA	107464924	107470237	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_107465146_107467101_107467222_107467307_107467393_107467496_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469403_107469474_107469571_107469673
transcript_98037.known	chr9	-	3410	21	FSM	ENSMUSG00000057969.16	ENSMUST00000102530.8	3410	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	19.0711824489202	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGGAATGGCCCCAGCAG	4361	False	NA	-22	True	AATAAA	-16	NA	107486398	107475551	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_107476375_107476775_107476916_107477001_107477058_107477148_107477307_107477528_107477571_107477652_107477745_107478026_107478247_107478556_107478702_107478782_107478853_107478958_107479071_107479158_107479305_107480072_107480193_107480320_107480415_107480495_107480616_107481005_107481069_107481241_107481400_107482167_107482355_107482645_107482787_107483748_107484134_107484232_107484292_107486319
transcript_98042.known	chr9	-	3191	20	FSM	ENSMUSG00000057969.16	ENSMUST00000102532.10	3191	20	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_18	17.1961150028469	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACGCTGGTTCCAGTGAG	4331	False	NA	-2	True	ATTAAA	-15	NA	107486428	107475415	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_107476375_107476775_107476916_107477001_107477058_107477148_107477307_107477528_107477571_107477652_107477745_107478026_107478247_107478556_107478702_107478782_107478853_107478958_107479071_107479158_107479305_107480072_107480193_107480320_107480415_107480495_107480616_107481005_107481069_107481241_107481400_107482167_107482355_107482645_107482787_107484232_107484292_107486319
transcript_98043.known	chr9	-	1777	9	FSM	ENSMUSG00000032562.14	ENSMUST00000192615.6	1777	9	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_1	364.681860496241	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCGTGTTCTTTTCTCCT	4825	False	NA	0	True	AATAAA	-24	NA	107512511	107491323	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_107491915_107492810_107493025_107493353_107493508_107493612_107493743_107494133_107494263_107496895_107497057_107497245_107497388_107497618_107497662_107512298
transcript_98044.known	chr9	-	2215	9	FSM	ENSMUSG00000032562.14	ENSMUST00000055704.12	2215	9	0	0	0	0	multi-exon	FALSE	canonical	3	1026	junction_1	123.439193026364	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCGTGTTCTTTTCTCCT	4770	False	NA	0	True	AATAAA	-24	NA	107512566	107491323	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_107492298_107492810_107493025_107493353_107493508_107493612_107493743_107494133_107494263_107496895_107497057_107497245_107497388_107497618_107497662_107512298
transcript_98045.known	chr9	-	2463	16	FSM	ENSMUSG00000010064.16	ENSMUST00000193932.6	2463	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	1.9731531449265	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGACCGATTGTGTTCTA	9779	False	NA	NA	False	TATAAA	-9	NA	107544625	107528359	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_107529238_107529327_107529432_107532221_107532367_107532454_107532580_107532783_107532885_107533133_107533214_107533298_107533470_107533654_107533714_107533793_107533877_107534828_107534911_107535008_107535102_107535192_107535267_107535835_107535952_107536130_107536210_107536293_107536444_107544502
transcript_98050.known	chr9	-	3064	25	FSM	ENSMUSG00000032580.13	ENSMUST00000035199.13	3064	25	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_9	145.554250815823	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGTTTCCTGTGTCTTTA	9714	False	NA	-6	True	AAGAAA	-12	NA	107648186	107617698	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626996_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107636974_107637049_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107648083
transcript_98054.nic	chr9	-	1836	19	ISM	ENSMUSG00000032580.13	ENSMUST00000182659.8	3205	25	-5	4813	-5	10	5prime_fragment	FALSE	canonical	3	262	junction_13	119.012863709748	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAAAAACAGCTTTCAAC	9700	False	NA	NA	False	AAGAAA	-2	NA	107648200	107622382	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_-_107622436_107623217_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107636974_107637049_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107648083
transcript_98058.known	chr9	-	1939	6	FSM	ENSMUSG00000032580.13	ENSMUST00000182007.8	1939	6	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_1	28.8027776438315	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAATTAAAACCAATAAG	9742	False	NA	NA	False	NA	NA	NA	107648158	107635642	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_107637049_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107648083
transcript_9806.known	chr10	+	4817	8	FSM	ENSMUSG00000078429.10	ENSMUST00000105256.10	4817	8	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_2	56.6705480863575	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGGACTGGGAGCTGCTT	NA	False	NA	13	True	AATAAA	-19	NA	126814585	126835838	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_126815171_126827399_126827546_126828467_126828507_126828876_126828979_126829720_126829778_126831723_126831817_126831894_126832081_126832229
transcript_98060.known	chr9	-	781	5	FSM	ENSMUSG00000032580.13	ENSMUST00000183248.3	781	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	155.609085531662	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGATGGAGTCCTTTGAAG	9756	False	NA	NA	False	NA	NA	NA	107648144	107637582	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107647759
transcript_98061.nic	chr9	-	1305	5	ISM	ENSMUSG00000032580.13	ENSMUST00000192130.6	784	8	-143	5611	-119	613	5prime_fragment	FALSE	canonical	3	324	junction_4	25.5770893574699	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGAAGGTGGTTTGTTCC	9586	False	NA	NA	False	TTTAAA	-11	NA	107648314	107636904	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_-_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107648083
transcript_98063.known	chr9	-	897	4	FSM	ENSMUSG00000032580.13	ENSMUST00000182073.8	897	4	0	0	0	0	multi-exon	FALSE	canonical	3	324	junction_3	29.4278779391243	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTACACAGAGAAACCCTGT	9712	False	NA	NA	False	NA	NA	NA	107648188	107642289	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_107642850_107644741_107644908_107646759_107646826_107648083
transcript_98064.known	chr9	-	2986	24	FSM	ENSMUSG00000032580.13	ENSMUST00000182371.8	2986	24	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_19	139.730783549852	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGTTTCCTGTGTCTTTA	9721	False	NA	-6	True	AAGAAA	-12	NA	107648179	107617698	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107648083
transcript_98065.known	chr9	-	1272	3	FSM	ENSMUSG00000032580.13	ENSMUST00000182518.2	1272	3	0	0	0	0	multi-exon	FALSE	canonical	3	324	junction_2	19.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGATTTA	9715	False	NA	NA	False	NA	NA	NA	107648185	107643803	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_107644908_107646759_107646826_107648083
transcript_98069.known	chr9	-	3716	21	FSM	ENSMUSG00000032582.15	ENSMUST00000183032.8	3716	21	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_19	71.8828734817968	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTTTGTTAAAGTTTTT	7513	False	NA	NA	False	AATAAA	-18	NA	107750020	107650761	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107710632_107710707_107724466_107724537_107728113_107728204_107729323_107730603_107737547_107737659_107749847
transcript_98070.known	chr9	-	3999	21	FSM	ENSMUSG00000032582.15	ENSMUST00000035201.13	3999	21	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_19	75.7708882091269	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTAAAGTTTTTTTTT	7505	False	NA	NA	False	AATAAA	-22	NA	107750028	107650757	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107710632_107710707_107724466_107724537_107728113_107728204_107729323_107730874_107737547_107737659_107749847
transcript_98077.nnic	chr9	-	2233	17	NIC	ENSMUSG00000032582.15	novel	3999	21	NA	NA	-18	0	combination_of_known_splicesites	FALSE	canonical	3	80	junction_15	79.7133291473264	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTAAAGTTTTTTTTT	7487	False	NA	NA	False	AATAAA	-22	NA	107750046	107650757	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107737547_107737659_107749847
transcript_98088.known	chr9	+	2042	6	FSM	ENSMUSG00000032583.8	ENSMUST00000035202.4	2042	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	6.62117814289874	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTTTGTCATTGGTTCTT	NA	False	NA	NA	False	ATTAAA	-22	NA	107765380	107780338	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_107765602_107775870_107776011_107777225_107777715_107778393_107779160_107779814_107779963_107780060
transcript_98091.known	chr9	+	2821	4	FSM	ENSMUSG00000032583.8	ENSMUST00000191906.6	2821	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	7.07106781186548	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTGCCCTTTGTCATTGG	NA	False	NA	NA	False	ATTAAA	-17	NA	107765349	107780333	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_107765602_107775870_107776011_107777225_107777715_107778393
transcript_98092.known	chr9	+	3277	11	FSM	ENSMUSG00000032936.14	ENSMUST00000035700.14	3277	11	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_4	7.3729234364667	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTCTTGCCTTTGCTTCCT	NA	False	NA	18	True	AATAAA	-26	NA	107812872	107826890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_107813251_107822477_107822582_107822687_107822820_107822988_107823064_107823277_107823417_107823538_107823660_107823816_107823893_107823981_107824119_107824280_107824360_107824578_107824667_107824942
transcript_981.known	chr1	-	1226	1	FSM	ENSMUSG00000025930.7	ENSMUST00000190471.2	1226	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAAAGAAAACACTAAT	NA	False	NA	NA	False	AATAAA	-15	NA	14826216	14824990	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_-_14825000_14826200
transcript_98102.known	chr9	+	2706	15	FSM	ENSMUSG00000032586.10	ENSMUST00000049348.9	2706	15	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_7	39.1366001255571	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGTTTGGCAGAGTATTT	NA	False	NA	4	True	NA	NA	NA	107828154	107849469	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_107828372_107833063_107833122_107833544_107833629_107836014_107836055_107836637_107836766_107838176_107838272_107838740_107838855_107839452_107839541_107840029_107840120_107840527_107840617_107845792_107845949_107847202_107847252_107847667_107847818_107847906_107847958_107848172
transcript_98108.nic	chr9	+	2589	14	NIC	ENSMUSG00000032586.10	novel	2706	15	NA	NA	-30	0	intron_retention	TRUE	canonical	3	271	junction_2	36.9687217865663	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAGGCTCTGGCTGTATA	NA	False	NA	13	True	AATAAA	-14	NA	107828124	107848724	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_107828372_107833063_107833122_107833544_107833629_107836014_107836055_107836637_107836766_107838176_107838272_107838740_107839541_107840029_107840120_107840527_107840617_107845792_107845949_107847202_107847252_107847667_107847818_107847906_107847958_107848172
transcript_98122.nic	chr9	+	1046	2	ISM	ENSMUSG00000032586.10	ENSMUST00000192567.2	1949	4	-41	1824	-30	-1824	intron_retention	FALSE	canonical	3	343	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAGAAAGAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	107828124	107833862	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_107828372_107833063
transcript_98128.known	chr9	+	4559	6	FSM	ENSMUSG00000032594.12	ENSMUST00000035214.11	4559	6	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_5	50.8700304698159	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTCCAAGTCTGTGTGA	6720	False	NA	17	True	AATAAA	-17	NA	107879699	107925981	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_107880022_107901301_107901650_107909197_107909409_107918103_107918286_107921923_107922100_107922661
transcript_98129.known	chr9	+	2157	6	FSM	ENSMUSG00000032594.12	ENSMUST00000167159.9	2157	6	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_5	93.84540478894	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTAGCCTGGAATCCAT	6862	False	NA	2	True	ACTAAA	-13	NA	107879841	107923308	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_107880022_107901301_107901650_107909197_107909409_107918103_107918286_107921923_107922513_107922661
transcript_9813.known	chr10	-	833	5	FSM	ENSMUSG00000040521.12	ENSMUST00000140564.8	833	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	441.306228711991	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTCCATTACACTGGGGC	NA	False	NA	NA	False	NA	NA	NA	126866260	126858494	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_126858796_126860804_126860893_126864233_126864357_126865422_126865552_126866068
transcript_98130.known	chr9	-	1025	2	FSM	ENSMUSG00000042106.6	ENSMUST00000048568.6	1025	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGGTCCCATACTCCTG	9756	False	NA	NA	False	AATAAA	-17	NA	107863078	107861421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_107862264_107862895
transcript_98131.known	chr9	+	1244	5	FSM	ENSMUSG00000032594.12	ENSMUST00000177158.2	1244	5	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_3	111.108899283541	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGGCAGAACATTTGTCC	2379	False	NA	36	True	TATAAA	-6	NA	107909271	107923342	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_107909409_107918103_107918286_107921923_107922100_107922444_107922513_107922661
transcript_98132.known	chr9	+	2262	18	FSM	ENSMUSG00000032591.16	ENSMUST00000035211.14	2262	18	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_13	9.09998288906715	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGAGTGCTTCTTAGTTTC	6663	False	NA	18	True	CATAAA	-23	NA	107957634	107962202	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_107957730_107958343_107958492_107958583_107958697_107958782_107958898_107958981_107959119_107959199_107959321_107959401_107959521_107959663_107959860_107960018_107960150_107960227_107960331_107960452_107960590_107960677_107960714_107960792_107960902_107961062_107961141_107961259_107961407_107961486_107961594_107961691_107961832_107961972
transcript_98137.known	chr9	+	1429	10	FSM	ENSMUSG00000070284.11	ENSMUST00000047947.9	1429	10	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	31.8309578326385	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGGACTGGAAGTCAAGC	NA	False	NA	29	True	NA	NA	NA	107926523	107928901	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_107926620_107926710_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928176_107928258_107928442_107928524
transcript_98146.known	chr9	+	2702	9	FSM	ENSMUSG00000070284.11	ENSMUST00000112295.9	2702	9	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_7	12.9807549857472	522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTATGGTAACTTGGGTCT	NA	False	NA	NA	False	NA	NA	NA	107926440	107930000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928176_107928258_107928442_107928524
transcript_9815.known	chr10	-	1206	6	FSM	ENSMUSG00000040521.12	ENSMUST00000040560.11	1206	6	0	0	0	0	multi-exon	FALSE	canonical	3	855	junction_5	79.6728310027954	1452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAATGTGTGAGTGTGTGT	NA	False	NA	-3	True	AATAAA	-24	NA	126866709	126858200	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_126858796_126860804_126860893_126864233_126864357_126865422_126865552_126866331_126866506_126866612
transcript_98151.known	chr9	+	1853	8	FSM	ENSMUSG00000070284.11	ENSMUST00000137284.8	1853	8	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_6	10.1196918562428	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGCAGTCCTTGTTGTTC	NA	False	NA	10	True	NA	NA	NA	107926487	107929115	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928442_107928524
transcript_98155.known	chr9	+	1052	6	FSM	ENSMUSG00000070284.11	ENSMUST00000145330.3	1052	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	49.4085012927937	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGGCCCTGGACTTGGTGC	NA	False	NA	NA	False	NA	NA	NA	107926653	107928718	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107928047_107928442_107928524
transcript_98159.known	chr9	+	163	2	FSM	ENSMUSG00000070284.11	ENSMUST00000150700.2	163	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCCATTGGTGGACTTCT	NA	False	NA	NA	False	NA	NA	NA	107926467	107926780	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_107926561_107926710
transcript_9816.known	chr10	-	695	3	FSM	ENSMUSG00000040521.12	ENSMUST00000134917.2	695	3	0	0	0	0	multi-exon	FALSE	canonical	3	855	junction_2	50	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAATATAA	NA	False	NA	NA	False	NA	NA	NA	126866672	126865090	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_126865552_126866331_126866506_126866612
transcript_98160.known	chr9	-	2518	22	FSM	ENSMUSG00000032590.15	ENSMUST00000193254.6	2518	22	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_21	23.0064567492301	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGTCTGTGCTGGTACTT	NA	False	NA	-32	True	AATAAA	-14	NA	107971805	107962611	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_107962877_107962959_107963067_107963148_107963252_107963337_107963529_107963621_107963711_107964221_107964303_107964379_107964464_107964921_107965061_107965459_107965549_107966716_107966769_107967287_107967386_107968441_107968503_107968966_107969089_107969169_107969211_107969286_107969379_107969474_107969613_107969752_107969917_107970005_107970082_107970179_107970274_107970820_107970948_107971425_107971559_107971633
transcript_98161.nnic	chr9	-	2265	21	NIC	ENSMUSG00000032590.15	novel	2518	22	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	10	junction_19	42.4109360896456	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTCTGTGCTGGTACT	NA	False	NA	-33	True	AATAAA	-13	NA	107971680	107962612	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_107962877_107962959_107963067_107963148_107963252_107963337_107963529_107963621_107963711_107964221_107964303_107964379_107964464_107964921_107965061_107965459_107965549_107966716_107966769_107967287_107967386_107968441_107968503_107968966_107969089_107969169_107969211_107969286_107969379_107969474_107969613_107969752_107969917_107970005_107970082_107970179_107970274_107971425_107971559_107971633
transcript_98172.nic	chr9	-	1807	5	ISM	ENSMUSG00000032589.15	ENSMUST00000124763.2	7496	8	5424	2552	5424	-2552	3prime_fragment	TRUE	canonical	3	14	junction_1	4.12310562561766	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGGAGTTAATTGCAAACA	3727	False	NA	NA	False	AATAAA	-15	NA	107982188	107975773	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_-_107977097_107980388_107980482_107980862_107980918_107981142_107981275_107981984
transcript_98173.nic	chr9	-	1249	5	ISM	ENSMUSG00000032589.15	ENSMUST00000124763.2	7496	8	5479	3055	5479	-3055	3prime_fragment	FALSE	canonical	3	14	junction_1	4.12310562561766	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTTTTGTTGTTGTTGT	3782	False	NA	NA	False	NA	NA	NA	107982133	107976276	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_-_107977097_107980388_107980482_107980862_107980918_107981142_107981275_107981984
transcript_98176.known	chr9	-	5662	4	FSM	ENSMUSG00000039952.16	ENSMUST00000191899.6	5662	4	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_3	109.352640571684	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGAGTCTAGTGGATGGG	NA	False	NA	NA	False	NA	NA	NA	108141157	108081832	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_108086861_108095211_108095610_108130299_108130357_108140978
transcript_98177.known	chr9	-	4364	4	FSM	ENSMUSG00000039952.16	ENSMUST00000080435.9	4364	4	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_3	135.056366833342	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTAAAAAATGGTGATGCT	NA	False	NA	23	True	ATTAAA	-9	NA	108141014	108083142	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_108086861_108095211_108095610_108130299_108130357_108140823
transcript_98180.known	chr9	+	2133	6	FSM	ENSMUSG00000032606.8	ENSMUST00000035227.8	2133	6	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_5	4.63033476111609	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGTGTCAGCTGCTTGT	NA	False	NA	14	True	NA	NA	NA	108167627	108173697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108167862_108170534_108170712_108171129_108171244_108171644_108171717_108172087_108172193_108172266
transcript_98191.known	chr9	+	428	2	FSM	ENSMUSG00000032606.8	ENSMUST00000194496.2	428	2	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGGGGACTTCCTGCCT	NA	False	NA	NA	False	NA	NA	NA	108167642	108170743	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108167862_108170534
transcript_98193.known	chr9	+	2082	9	FSM	ENSMUSG00000032607.13	ENSMUST00000035230.7	2082	9	0	0	0	0	multi-exon	TRUE	canonical	3	166	junction_5	15.4029218007494	489	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTCTCTAGCTTCCTTG	NA	False	NA	21	True	AATAAA	-22	NA	108174068	108179501	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108174225_108174326_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178428_108178518
transcript_98198.known	chr9	+	2197	6	FSM	ENSMUSG00000007815.14	ENSMUST00000007959.14	2197	6	0	0	0	0	multi-exon	FALSE	canonical	3	1457	junction_4	47.4535562418666	4489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGTATTCTCTTGTGT	NA	False	NA	15	True	AATAAA	-15	NA	108183327	108215133	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
transcript_98199.known	chr9	+	852	6	FSM	ENSMUSG00000007815.14	ENSMUST00000194701.6	852	6	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	597.472543302201	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGTGAGAGAGGTTTTTGA	NA	False	NA	NA	False	NA	NA	NA	108183995	108213933	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108184276_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
transcript_982.known	chr1	+	894	1	FSM	ENSMUSG00000082193.2	ENSMUST00000121367.2	894	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	393	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGTTTTCTATGAAGATT	NA	False	NA	NA	False	NA	NA	NA	14935295	14936189	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_14935300_14936200
transcript_98207.known	chr9	-	1094	3	FSM	ENSMUSG00000039461.13	ENSMUST00000192886.6	1094	3	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_2	5	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCTGTTCTTTTTGAGGA	7115	False	NA	NA	False	NA	NA	NA	108183359	108180852	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_108181453_108182524_108182580_108182920
transcript_98208.known	chr9	-	1668	3	FSM	ENSMUSG00000039461.13	ENSMUST00000044725.9	1668	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	14.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTGGTGTGGTTATTCAA	7285	False	NA	-2	True	ATTAAA	-13	NA	108183189	108180156	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_108181453_108182524_108182628_108182920
transcript_98216.known	chr9	+	653	3	FSM	ENSMUSG00000063856.9	ENSMUST00000193987.2	653	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4434	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGATGGGCGCTGGTCCC	NA	False	NA	-75	True	NA	NA	NA	108216474	108217449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108216516_108216619_108216758_108216975
transcript_98219.known	chr9	+	1072	2	FSM	ENSMUSG00000063856.9	ENSMUST00000082429.8	1072	2	0	0	0	0	multi-exon	FALSE	canonical	3	8868	junction_1	0	118469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTGTGTCCTGTGTCA	NA	False	NA	18	True	AATAAA	-18	NA	108216252	108217542	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108216758_108216975
transcript_9822.known	chr10	+	1044	6	FSM	ENSMUSG00000006732.15	ENSMUST00000120542.8	1044	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	158.453273869617	640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	126877826	126881484	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_126877940_126878928_126879093_126880335_126880521_126880624_126880739_126880865_126880997_126881147
transcript_98227.known	chr9	+	787	2	FSM	ENSMUSG00000063856.9	ENSMUST00000191997.2	787	2	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGATGGGCGCTGGTCCC	NA	False	NA	-75	True	NA	NA	NA	108216441	108217449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108216758_108216978
transcript_98228.known	chr9	+	3662	22	FSM	ENSMUSG00000032612.15	ENSMUST00000035237.12	3662	22	0	0	0	0	multi-exon	FALSE	canonical	3	580	junction_19	65.884562002066	249	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTCTCCACGTTAGCTT	NA	False	NA	64	True	CATAAA	-21	NA	108225051	108269744	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108225218_108228108_108228237_108233609_108233741_108237293_108237421_108239759_108239906_108240035_108240098_108243028_108243170_108243959_108244078_108245017_108245192_108248099_108248259_108249760_108249986_108250805_108250890_108251422_108251518_108255634_108255827_108256463_108256553_108258526_108258752_108261283_108261355_108261595_108261715_108262005_108262156_108265475_108265580_108268178_108268268_108268877
transcript_9823.known	chr10	+	1791	6	FSM	ENSMUSG00000006732.15	ENSMUST00000006915.14	1791	6	0	0	0	0	multi-exon	FALSE	canonical	3	356	junction_3	29.1245600825146	648	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTGAGTGTTTGCCTG	NA	False	NA	13	True	TTTAAA	-18	NA	126877800	126882234	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_126877940_126878928_126879093_126880335_126880521_126880624_126880739_126880894_126880997_126881147
transcript_9824.known	chr10	+	1057	2	FSM	ENSMUSG00000006732.15	ENSMUST00000135655.2	1057	2	0	0	0	0	multi-exon	FALSE	canonical	3	433	junction_1	0	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	126877825	126879871	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_126877940_126878928
transcript_98240.nnic	chr9	+	1918	3	NNC	ENSMUSG00000063856.9	novel	653	3	NA	NA	-4	18752	intron_retention	FALSE	canonical	0	0	junction_2	4434	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGAGCTGTGTTCTTAAG	NA	False	NA	NA	False	NA	NA	NA	108216437	108236294	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_108216758_108216975_108217550_108235270
transcript_98244.known	chr9	+	1101	4	FSM	ENSMUSG00000032611.10	ENSMUST00000035234.6	1101	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	2.62466929133727	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGGGTTTATTACCTGGG	5955	False	NA	NA	False	AATAAA	-20	NA	108270032	108274969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108270059_108270433_108270839_108272492_108272585_108274391
transcript_98246.nnic	chr9	-	760	3	NNC	ENSMUSG00000047220.6	novel	2890	7	NA	NA	-3385	-17356	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_2	5	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTAGTTTATTCATGACT	NA	False	NA	NA	False	NA	NA	NA	108309068	108298165	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_108298761_108305614_108305682_108308970
transcript_98247.nnic	chr9	-	593	3	NNC	ENSMUSG00000047220.6	novel	2890	7	NA	NA	-3385	-17523	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_2	5	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTTGTGCTTGATTGAT	NA	False	NA	NA	False	NA	NA	NA	108309068	108298332	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_108298761_108305614_108305682_108308970
transcript_98248.nnic	chr9	-	374	3	NNC	ENSMUSG00000047220.6	novel	2890	7	NA	NA	-3385	-21212	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	8	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTGTGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	108309068	108302021	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_108302231_108305614_108305682_108308970
transcript_98249.known	chr9	-	1897	6	FSM	ENSMUSG00000032609.13	ENSMUST00000035232.13	1897	6	0	0	0	0	multi-exon	TRUE	canonical	3	5	junction_5	2.71293199325011	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAATAAAAATACTGCTCA	NA	False	NA	-28	True	NA	NA	NA	108329576	108324856	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_108325685_108326024_108326127_108326265_108326491_108326819_108326985_108328074_108328591_108329515
transcript_9825.known	chr10	-	3037	4	FSM	ENSMUSG00000040502.6	ENSMUST00000040307.6	3037	4	0	0	0	0	multi-exon	TRUE	canonical	3	10	junction_3	2.16024689946929	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCAGAGGGCTTTCTTAC	9919	False	NA	1	True	ATTAAA	-28	NA	126896053	126890879	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_126892781_126893300_126893494_126894088_126894245_126895266
transcript_98250.known	chr9	+	384	2	FSM	ENSMUSG00000049305.7	ENSMUST00000193269.2	384	2	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGCCACGTCACTTCCCA	195	False	NA	NA	False	NA	NA	NA	108337733	108340466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108337788_108340136
transcript_98251.known	chr9	+	3092	2	FSM	ENSMUSG00000049305.7	ENSMUST00000061209.7	3092	2	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_1	0	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCTGGAGAGATGGCTCAG	187	False	NA	NA	False	AATAAA	-13	NA	108337725	108343137	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108337817_108340136
transcript_98253.known	chr9	+	5629	33	FSM	ENSMUSG00000052911.10	ENSMUST00000065014.10	5629	33	0	0	0	0	multi-exon	TRUE	canonical	3	106	junction_6	29.6719037980376	186	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTGTTGTCTGGCCTTTG	9092	False	NA	19	True	AATAAA	-16	NA	108357055	108367729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108357174_108357256_108357343_108357476_108357650_108357736_108357873_108357954_108358029_108358432_108358622_108358702_108358767_108359006_108359210_108359299_108359421_108359706_108359896_108360079_108360260_108360369_108360483_108360728_108360809_108360886_108361020_108361209_108361369_108361444_108361573_108362385_108362513_108362696_108362890_108362965_108363110_108363313_108363546_108363620_108363785_108363862_108364088_108364174_108364393_108364491_108364589_108364674_108365048_108365145_108365331_108365403_108365646_108365724_108366074_108366365_108366574_108366651_108366794_108366975_108367153_108367244_108367405_108367482
transcript_98254.known	chr9	+	4512	27	FSM	ENSMUSG00000006676.17	ENSMUST00000178075.8	4512	27	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_10	41.4654094097091	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTAGTGACTGATCCACAA	NA	False	NA	11	True	AATAAA	-15	NA	108368054	108379516	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108368095_108369669_108369930_108370166_108370200_108370334_108370464_108370548_108370683_108370759_108371063_108371214_108371438_108371565_108371723_108371825_108371898_108372010_108372127_108372232_108372454_108372735_108372932_108373009_108373144_108373268_108373428_108373503_108373615_108374050_108374162_108374264_108374367_108375094_108375236_108375321_108375441_108375640_108375779_108375878_108376193_108376293_108376405_108376492_108376710_108376790_108376944_108377048_108377210_108377289_108377469_108379038
transcript_98255.known	chr9	+	2398	24	FSM	ENSMUSG00000032604.17	ENSMUST00000208214.2	2398	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	114.995898669366	437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTCTCTCTGTTGTCTGCCT	NA	False	NA	18	True	AATAAA	-21	NA	108385257	108393140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108385399_108385581_108385681_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
transcript_98256.known	chr9	+	543	3	FSM	ENSMUSG00000032604.17	ENSMUST00000136293.2	543	3	0	0	0	0	multi-exon	FALSE	canonical	3	586	junction_1	18.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCCCTCTGGCGTCTCTC	NA	False	NA	6	True	AATAAA	-9	NA	108391949	108393128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108392233_108392305_108392432_108392994
transcript_98259.known	chr9	+	2291	6	FSM	ENSMUSG00000006673.15	ENSMUST00000193258.6	2291	6	0	0	0	0	multi-exon	FALSE	canonical	3	392	junction_1	95.7195904713346	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAAAACTATCAAAA	1163	False	NA	NA	False	NA	NA	NA	108394301	108422519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108394440_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061
transcript_98260.known	chr9	+	3040	10	FSM	ENSMUSG00000006673.15	ENSMUST00000112155.9	3040	10	0	0	0	0	multi-exon	FALSE	canonical	3	392	junction_1	89.886485340754	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGCGCTTTTTTTTTTTT	1170	False	NA	4	True	AGTAAA	-8	NA	108394308	108437191	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108394440_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
transcript_98261.known	chr9	+	3331	11	FSM	ENSMUSG00000006673.15	ENSMUST00000006851.15	3331	11	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	235.086983901704	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTACTGGAGAACGTGTC	1174	False	NA	64	True	NA	NA	NA	108394312	108437362	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108394440_108395901_108396026_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
transcript_98267.known	chr9	+	1858	14	FSM	ENSMUSG00000062867.14	ENSMUST00000081111.14	1858	14	0	0	0	0	multi-exon	TRUE	canonical	3	1280	junction_13	396.993628196225	14041	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTGAGTTCAATGGGCAC	995	False	NA	36	True	AATAAA	-29	NA	108437484	108442783	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
transcript_98268.known	chr9	-	1487	5	FSM	ENSMUSG00000070283.5	ENSMUST00000074208.6	1487	5	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_3	47.1301389770919	1587	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATACTGGATCTGTTTTCA	8143	False	NA	NA	False	NA	NA	NA	108444633	108442735	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_108443275_108443357_108443459_108443539_108443607_108443754_108443951_108444049
transcript_98269.known	chr9	-	852	3	FSM	ENSMUSG00000070283.5	ENSMUST00000193242.2	852	3	0	0	0	0	multi-exon	FALSE	canonical	3	450	junction_1	48.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTCCTCTTACATATTTT	8667	False	NA	-18	True	NA	NA	NA	108444109	108443075	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_108443275_108443357_108443951_108444049
transcript_98272.known	chr9	+	1746	12	FSM	ENSMUSG00000019039.15	ENSMUST00000019183.14	1746	12	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_8	26.2473926292634	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGAGTGAGGCGTGTTC	NA	False	NA	15	True	AATAAA	-17	NA	108447084	108449973	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108447275_108447348_108447645_108447762_108448014_108448090_108448171_108448243_108448373_108448644_108448719_108448811_108448874_108448980_108449064_108449139_108449317_108449385_108449497_108449591_108449661_108449749
transcript_98275.nnic	chr9	+	1594	11	NIC	ENSMUSG00000019039.15	novel	1746	12	NA	NA	-26	0	combination_of_known_splicesites	FALSE	canonical	2	7	junction_8	45.4652614641113	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGAGAGTGAGGCGTGTT	NA	False	NA	14	True	AATAAA	-16	NA	108447058	108449972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_108447275_108447348_108447645_108447762_108448014_108448090_108448171_108448243_108448373_108448644_108448719_108448811_108448874_108448980_108449064_108449385_108449497_108449591_108449661_108449749
transcript_98284.nic	chr9	+	1916	10	NIC	ENSMUSG00000019039.15	novel	1746	12	NA	NA	-26	0	intron_retention	FALSE	canonical	3	128	junction_6	18.4357409183867	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGAGAGTGAGGCGTGTT	NA	False	NA	14	True	AATAAA	-16	NA	108447058	108449972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_108447275_108447348_108447645_108447762_108448014_108448090_108448171_108448243_108448373_108448644_108448719_108448811_108448874_108448980_108449497_108449591_108449661_108449749
transcript_98288.known	chr9	-	4163	6	FSM	ENSMUSG00000066357.7	ENSMUST00000068700.7	4163	6	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_5	13.1969693490589	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTGCCTTACCATCTCC	5751	False	NA	-1	True	AATAAA	-20	NA	108455938	108449509	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_108450613_108450687_108450807_108450892_108451010_108451103_108451200_108451299_108453782_108455692
transcript_98292.known	chr9	-	1841	9	FSM	ENSMUSG00000006675.11	ENSMUST00000006853.11	1841	9	0	0	0	0	multi-exon	FALSE	canonical	2	23	junction_3	12.7273082385868	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCCCGCTTGGGGGAGGGG	NA	False	NA	2	True	AATAAA	-36	NA	108474866	108456060	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_108456508_108456914_108457039_108457214_108457306_108457917_108458104_108459040_108459204_108460045_108460143_108460840_108461032_108474097_108474180_108474406
transcript_98295.known	chr9	-	558	4	FSM	ENSMUSG00000006675.11	ENSMUST00000192080.6	558	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	18.4571575998762	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCCGTGTCCTGTCTGTTC	NA	False	NA	NA	False	AATAAA	-20	NA	108474545	108460189	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_108460336_108460840_108461032_108474097_108474180_108474406
transcript_98304.known	chr9	-	3924	16	FSM	ENSMUSG00000064145.13	ENSMUST00000013338.14	3924	16	0	0	0	0	multi-exon	TRUE	canonical	3	517	junction_5	114.47891605978	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGGAGTCTTTTTTTC	NA	False	NA	NA	False	AATAAA	-20	NA	108526579	108480140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108521224_108521568_108522131_108522194_108526427
transcript_98305.known	chr9	-	2160	15	FSM	ENSMUSG00000064145.13	ENSMUST00000193190.6	2160	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	244.802388026901	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTTCACCCTTTAGCTA	NA	False	NA	-24	True	AATAAA	-11	NA	108526584	108481884	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108521224_108521565_108522131_108522194_108526427
transcript_98306.known	chr9	-	435	2	FSM	ENSMUSG00000064145.13	ENSMUST00000195623.2	435	2	0	0	0	0	multi-exon	FALSE	canonical	3	892	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGGGCATTGGATCCCAT	NA	False	NA	NA	False	NA	NA	NA	108526568	108521899	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_108522194_108526427
transcript_98307.known	chr9	+	1783	9	FSM	ENSMUSG00000032602.7	ENSMUST00000035222.6	1783	9	0	0	0	0	multi-exon	FALSE	canonical	3	619	junction_8	102.171118717571	1078	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATCGTGTGATATTTTCT	5077	False	NA	3	True	NA	NA	NA	108539296	108561840	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108539532_108546964_108547058_108549617_108549746_108554782_108554874_108557285_108557404_108559170_108559244_108559545_108559656_108560247_108560373_108561030
transcript_98310.nic	chr9	+	1802	6	NIC	ENSMUSG00000032599.13	novel	1708	6	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	35.9243649909083	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACAGTGCTGCTGTCGTTC	NA	False	NA	14	True	AATACA	-18	NA	108660969	108683531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_108661070_108673262_108673596_108675469_108675693_108676440_108676617_108681740_108681917_108682737
transcript_98315.known	chr9	+	607	4	FSM	ENSMUSG00000032599.13	ENSMUST00000192226.6	607	4	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_3	30.6847772609735	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAAGTGTCGTCTCTCTCT	NA	False	NA	NA	False	NA	NA	NA	108661063	108674544	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108661070_108673262_108673596_108673853_108673983_108674405
transcript_98322.known	chr9	+	1191	3	FSM	ENSMUSG00000032599.13	ENSMUST00000192307.6	1191	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	47	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGTGTCTTGTAGTTC	NA	False	NA	NA	False	AATAAA	-16	NA	108660994	108675188	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108661070_108673262_108673596_108674405
transcript_98324.known	chr9	+	748	3	FSM	ENSMUSG00000032599.13	ENSMUST00000194875.6	748	3	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_2	53	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTTGGCTCACCCACCAT	NA	False	NA	8	True	AATAAA	-22	NA	108661063	108674891	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108661070_108673262_108673596_108674482
transcript_98332.known	chr9	+	2820	2	FSM	ENSMUSG00000032599.13	ENSMUST00000193634.2	2820	2	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCAAAAGTGTAAATTATGT	NA	False	NA	NA	False	NA	NA	NA	108661020	108676033	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108661070_108673262
transcript_98334.known	chr9	+	1199	4	FSM	ENSMUSG00000032599.13	ENSMUST00000192028.6	1199	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	19.4422220952236	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTTGTAGTTCTTTGG	NA	False	NA	NA	False	AATAAA	-21	NA	108673329	108675193	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108673596_108673739_108673772_108673869_108673983_108674405
transcript_98335.known	chr9	+	3360	13	FSM	ENSMUSG00000032598.9	ENSMUST00000035218.9	3360	13	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_4	11.5551215196264	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTAGTGTCCGGTGCTCCC	3150	False	NA	NA	False	AATAAA	-22	NA	108685566	108696043	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108685854_108688244_108688355_108688747_108688953_108689077_108689169_108689417_108689909_108691147_108691319_108691463_108691551_108691628_108691768_108691865_108691947_108692126_108692256_108692358_108692452_108692545_108692719_108694740
transcript_98336.known	chr9	+	2552	21	FSM	ENSMUSG00000023259.18	ENSMUST00000188557.8	2552	21	0	0	0	0	multi-exon	TRUE	canonical	3	10	junction_1	9.81121806912883	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTGTCTGTCCAACTTC	NA	False	NA	-2	True	AATACA	-12	NA	108731333	108742096	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108731386_108732975_108733142_108733221_108733362_108733530_108733642_108733874_108734024_108734139_108734305_108734390_108734544_108734864_108734948_108735023_108735172_108735395_108735510_108735629_108735708_108736022_108736119_108736199_108736307_108736485_108736556_108737801_108737895_108737996_108738102_108738496_108738590_108739280_108739458_108739626_108739682_108741477_108741615_108741836
transcript_98338.known	chr9	+	538	2	FSM	ENSMUSG00000025652.7	ENSMUST00000026744.6	538	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTTTCTCCGATTGTTGT	3978	False	NA	NA	False	AATAAA	-39	NA	108743686	108744631	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108744026_108744432
transcript_98345.known	chr9	+	1653	13	FSM	ENSMUSG00000025651.15	ENSMUST00000026743.14	1653	13	0	0	0	0	multi-exon	FALSE	canonical	3	5755	junction_3	194.83802033142	15941	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGTCCTTCCTTAGA	NA	False	NA	18	True	AATAAA	-14	NA	108765700	108778691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774427_108774508_108776005_108776122_108776403_108776548_108776665_108776827_108776923_108777010_108777612_108777702_108778006_108778083_108778502
transcript_98346.known	chr9	+	580	5	FSM	ENSMUSG00000025651.15	ENSMUST00000194047.3	580	5	0	0	0	0	multi-exon	FALSE	canonical	2	145	junction_1	2557.78800919857	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGAGCTGGATGAGCTTG	NA	False	NA	NA	False	NA	NA	NA	108765781	108773956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108765856_108766134_108766225_108771151_108771239_108773111_108773242_108773757
transcript_98347.known	chr9	+	439	3	FSM	ENSMUSG00000025648.19	ENSMUST00000198277.5	439	3	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTTACAACCCATTTGC	NA	False	NA	NA	False	NA	NA	NA	108821015	108828337	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108821181_108827926_108828044_108828180
transcript_98348.known	chr9	+	910	1	FSM	ENSMUSG00000025648.19	ENSMUST00000199620.2	910	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAAAAAATTGTTTTA	NA	False	NA	NA	False	NA	NA	NA	108821059	108821969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108821100_108822000
transcript_98349.known	chr9	+	1834	6	FSM	ENSMUSG00000025647.17	ENSMUST00000026737.12	1834	6	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_2	42.9678949914934	739	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCCTTTCTTCAGCGCCT	NA	False	NA	18	True	AATAAA	-18	NA	108867652	108886792	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108867833_108869937_108870095_108880434_108880522_108885045_108885162_108885354_108885574_108885717
transcript_98352.known	chr9	+	2010	5	FSM	ENSMUSG00000025647.17	ENSMUST00000198639.2	2010	5	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_2	33.0302891298275	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCCTTTCTTCAGCGCCT	NA	False	NA	18	True	AATAAA	-18	NA	108867669	108886792	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108867833_108869937_108870095_108880434_108880522_108885045_108885574_108885717
transcript_98355.known	chr9	+	515	4	FSM	ENSMUSG00000025647.17	ENSMUST00000198591.5	515	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	122.37192851667	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGAACCTGCCCCCAGCC	NA	False	NA	NA	False	NA	NA	NA	108881921	108885770	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108882049_108885045_108885162_108885354_108885574_108885717
transcript_98357.known	chr9	+	1038	4	FSM	ENSMUSG00000025647.17	ENSMUST00000154184.5	1038	4	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	98.8005847935909	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTATAGAGGGCCACATG	NA	False	NA	NA	False	NA	NA	NA	108883930	108886275	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108884076_108885045_108885162_108885354_108885574_108885717
transcript_98362.known	chr9	-	2572	13	FSM	ENSMUSG00000025646.10	ENSMUST00000045011.9	2572	13	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_2	14.834971819619	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGTTTCCTGAGTCCGA	NA	False	NA	1	True	ATTAAA	-26	NA	108903192	108888814	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_108888977_108889330_108889581_108889696_108889778_108890177_108890270_108890599_108890737_108894195_108894868_108895033_108895161_108896084_108896187_108896820_108896979_108898346_108898466_108900785_108900957_108901674_108901806_108902822
transcript_98366.nic	chr9	-	939	3	ISM	ENSMUSG00000025646.10	ENSMUST00000045011.9	2572	13	-12	11716	-12	283	5prime_fragment	FALSE	canonical	3	126	junction_1	17	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATTGTTTAAGTACTCGC	NA	False	NA	NA	False	AATAAA	-23	NA	108903204	108900530	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_-_108900957_108901674_108901806_108902822
transcript_98367.known	chr9	-	1084	2	FSM	ENSMUSG00000049734.10	ENSMUST00000061973.5	1084	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTGCCGCCTCTGCTTC	NA	False	NA	1	True	AATAAA	-18	NA	108888802	108887000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_108887997_108888714
transcript_98368.known	chr9	-	1054	2	FSM	ENSMUSG00000049734.10	ENSMUST00000112053.2	1054	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGACTGCTTGCCGCCTCT	NA	False	NA	-4	True	AATAAA	-13	NA	108888319	108887005	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_108887997_108888256
transcript_98371.known	chr9	+	1526	4	FSM	ENSMUSG00000025645.9	ENSMUST00000026735.9	1526	4	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	5.71547606649408	566	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAGTTATATCAGACTCAG	NA	False	NA	14	True	ATTAAA	-28	NA	108911560	108921557	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_108911636_108918404_108918716_108919908_108920074_108920582
transcript_9838.known	chr10	+	574	4	FSM	ENSMUSG00000006728.13	ENSMUST00000135179.8	574	4	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_1	2458.18813130502	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTTGTTAATGGTACA	NA	False	NA	-83	True	NA	NA	NA	126899484	126901149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_126899629_126900453_126900590_126900703_126900872_126901023
transcript_98380.known	chr9	-	380	3	FSM	ENSMUSG00000091537.3	ENSMUST00000193868.2	380	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_2	2893	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAACTTTTGTAAAAAAA	NA	False	NA	NA	False	AATGAA	-30	NA	108911446	108907253	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_108907494_108911069_108911158_108911394
transcript_98382.known	chr9	-	203	2	FSM	ENSMUSG00000091537.3	ENSMUST00000192442.2	203	2	0	0	0	0	multi-exon	FALSE	canonical	3	4656	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGGAGGAACAGAAGAAACT	NA	False	NA	NA	False	NA	NA	NA	108911433	108911130	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_108911295_108911394
transcript_98386.known	chr9	-	1614	2	FSM	ENSMUSG00000070282.7	ENSMUST00000125451.2	1614	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAAAACCAAAAACAAAC	NA	False	NA	NA	False	AATAAA	-14	NA	109661774	109659243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_109660498_109661414
transcript_98387.nnic	chr9	-	2269	2	NNC	ENSMUSG00000070282.7	novel	3977	2	NA	NA	-138579	15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAACAAACAAACAAACAAA	NA	False	NA	NA	False	AATAAA	-29	NA	109800353	109659228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_109660578_109799433
transcript_98394.known	chr9	+	719	7	FSM	ENSMUSG00000032478.15	ENSMUST00000200005.5	719	7	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_1	126.972000413039	546	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCCCAGCTGCGGTGTGGT	NA	False	NA	NA	False	NA	NA	NA	109661816	109671597	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_109661957_109662263_109662364_109664385_109664483_109668675_109668779_109670543_109670584_109670994_109671156_109671519
transcript_9840.known	chr10	+	2038	7	FSM	ENSMUSG00000006728.13	ENSMUST00000140254.8	2038	7	0	0	0	0	multi-exon	FALSE	canonical	3	4641	junction_3	424.742274797318	9229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTTTAATGTTTTTTC	NA	False	NA	29	True	AAAACA	-27	NA	126899482	126903166	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901873_126901969_126902106_126902797
transcript_98402.known	chr9	+	599	6	FSM	ENSMUSG00000032478.15	ENSMUST00000199758.5	599	6	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_4	239.071872038515	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCTGAAACAGGAGGCCAC	NA	False	NA	NA	False	NA	NA	NA	109661953	109671654	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_109661957_109662263_109662364_109664385_109664483_109668675_109668779_109670994_109671156_109671519
transcript_98404.known	chr9	+	715	6	FSM	ENSMUSG00000032478.15	ENSMUST00000200091.5	715	6	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	202.945707025303	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCAGTGTTCAGCCCTTCC	NA	False	NA	NA	False	AGTAAA	-15	NA	109661853	109671727	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_109661957_109662263_109662364_109668675_109668779_109670543_109670584_109670994_109671156_109671519
transcript_9841.known	chr10	+	468	2	FSM	ENSMUSG00000006728.13	ENSMUST00000145670.2	468	2	0	0	0	0	multi-exon	FALSE	canonical	3	5878	junction_1	0	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTATACTGGGATCTTT	NA	False	NA	23	True	ACTAAA	-30	NA	126901944	126903104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_126902106_126902797
transcript_98415.known	chr9	+	489	3	FSM	ENSMUSG00000032478.15	ENSMUST00000196762.5	489	3	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_1	169	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACACACACACACGCACAC	NA	False	NA	NA	False	NA	NA	NA	109661874	109664692	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_109661957_109662263_109662364_109664385
transcript_98417.known	chr9	+	1074	7	FSM	ENSMUSG00000032478.15	ENSMUST00000035053.12	1074	7	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_1	146.935359937627	1592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGTGCAAGCTTTCTCT	NA	False	NA	25	True	AATAAA	-32	NA	109661825	109672042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_109661876_109662263_109662364_109664385_109664483_109668675_109668779_109670543_109670584_109670994_109671156_109671519
transcript_98418.known	chr9	+	930	6	FSM	ENSMUSG00000032478.15	ENSMUST00000198201.5	930	6	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	211.367547177896	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCCAGGCTGGCAGTACT	NA	False	NA	7	True	AATAAA	-14	NA	109661854	109672024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_109661876_109662263_109662364_109668675_109668779_109670543_109670584_109670994_109671156_109671519
transcript_98419.known	chr9	+	865	6	FSM	ENSMUSG00000032478.15	ENSMUST00000200468.2	865	6	0	0	0	0	multi-exon	FALSE	canonical	3	493	junction_3	57.3431774494578	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTGTTCAGCCCTTCCTC	NA	False	NA	NA	False	AGTAAA	-17	NA	109662109	109671729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_109662364_109664385_109664483_109668675_109668779_109670543_109670584_109670994_109671156_109671519
transcript_9842.known	chr10	-	1556	6	FSM	ENSMUSG00000006736.10	ENSMUST00000060991.6	1556	6	0	0	0	0	multi-exon	FALSE	canonical	3	545	junction_1	41.1698919114442	792	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTCTTGTTTTCCTGTA	NA	False	NA	0	True	AATAAA	-15	NA	126906133	126903148	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_126904060_126904137_126904252_126904348_126904481_126904776_126904858_126905214_126905383_126905983
transcript_98420.known	chr9	+	3632	15	FSM	ENSMUSG00000032477.15	ENSMUST00000094324.8	3632	15	0	0	0	0	multi-exon	FALSE	canonical	3	454	junction_8	39.8577188898467	469	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTCTGCCTAGTTCCTAA	NA	False	NA	28	True	AATAAA	-18	NA	109704646	109722963	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_109705228_109706228_109706303_109707335_109707379_109708298_109708336_109708901_109709004_109710540_109710646_109712556_109712683_109713186_109713262_109713410_109713579_109716315_109716415_109717941_109718005_109718099_109718199_109718778_109718910_109720812_109720925_109721146
transcript_98423.known	chr9	+	6091	19	FSM	ENSMUSG00000032479.16	ENSMUST00000035055.15	6091	19	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	32.471877671397	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGCTTCTGTCCTCTTAG	NA	False	NA	25	True	AATAAA	-25	NA	109760527	109913023	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109900093_109900208_109901680_109901774_109907070_109907153_109908848_109908962_109910488_109910679_109910802
transcript_9843.known	chr10	-	453	2	FSM	ENSMUSG00000006736.10	ENSMUST00000220344.2	453	2	0	0	0	0	multi-exon	FALSE	canonical	3	666	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTGAACAGAGAAGGGCC	NA	False	NA	NA	False	GATAAA	-9	NA	126906130	126905076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_126905383_126905983
transcript_98434.nic	chr9	+	945	6	NIC	ENSMUSG00000032479.16	novel	6091	19	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_5	120.044325147006	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAATCTGCTTTGGCTGGCT	NA	False	NA	NA	False	NA	NA	NA	109760834	109857189	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109856966
transcript_98439.nic	chr9	+	1055	5	ISM	ENSMUSG00000032479.16	ENSMUST00000165876.8	5573	19	-97	55822	-33	4	5prime_fragment	FALSE	canonical	3	256	junction_1	35.7797079362032	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTTTGGCTGGCTTTAG	NA	False	NA	NA	False	AAGAAA	-1	NA	109760834	109857193	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746
transcript_9844.known	chr10	+	329	2	FSM	ENSMUSG00000112639.2	ENSMUST00000217874.2	329	2	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	0	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTCTCTTTTTAAATTT	NA	False	NA	NA	False	AATAAA	-13	NA	126906349	126906970	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_126906494_126906785
transcript_98443.known	chr9	+	5717	28	FSM	ENSMUSG00000032481.18	ENSMUST00000088716.12	5717	28	0	0	0	0	multi-exon	FALSE	canonical	3	994	junction_27	99.253261289205	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCATTCTCTGCATTCAT	2445	False	NA	24	True	AATAAA	-24	NA	109961047	110069246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_109961377_109964636_109964757_109968616_109968703_109976112_109976195_109978998_109979092_109982840_109982911_109986343_109986414_109993869_109993946_109996672_109996799_110000013_110000136_110002948_110003074_110004109_110004170_110006535_110006574_110011989_110012112_110012884_110012957_110014890_110015005_110015825_110015980_110016947_110017062_110019970_110020031_110025220_110025480_110026696_110026859_110031570_110031627_110033279_110033395_110035066_110035222_110042576_110042712_110050959_110051225_110063944_110064122_110066886
transcript_98444.known	chr9	+	3538	27	FSM	ENSMUSG00000032481.18	ENSMUST00000197984.5	3538	27	0	0	0	0	multi-exon	FALSE	canonical	3	1122	junction_24	83.6874645091864	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCATAGTTCCTGGCTGT	2502	False	NA	16	True	ATTAAA	-26	NA	109961104	110064359	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_109961377_109964636_109964757_109968616_109968703_109976112_109976195_109978998_109979092_109982840_109982911_109986343_109986414_109993869_109993946_109996672_109996799_110000013_110000136_110002948_110003074_110004109_110004170_110006535_110006574_110011989_110012112_110012884_110012957_110014890_110015005_110015825_110015980_110016947_110017062_110019970_110020031_110025220_110025480_110026696_110026859_110031570_110031627_110033279_110033395_110035066_110035222_110042576_110042712_110050959_110051225_110063944
transcript_98449.nic	chr9	+	1201	8	ISM	ENSMUSG00000032481.18	ENSMUST00000197480.5	1949	15	-44	19138	13	18107	5prime_fragment	FALSE	canonical	3	1285	junction_2	51.7063924520766	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTGTCACTCTGGCTTA	2458	False	NA	NA	False	AATAAA	-19	NA	109961060	109994233	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_109961377_109964636_109964757_109968616_109968703_109976112_109976195_109978998_109979092_109982840_109982911_109986343_109986414_109993869
transcript_9845.known	chr10	-	2627	15	FSM	ENSMUSG00000040462.14	ENSMUST00000164259.9	2627	15	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_3	48.7011398265807	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCATCAGGCTCTGTGGG	NA	False	NA	-4	True	AATAAA	-14	NA	126957000	126931520	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_126932242_126932498_126932612_126932783_126932949_126933800_126933991_126934209_126934507_126934699_126934786_126935271_126935327_126935481_126935577_126935758_126935861_126935953_126936165_126954967_126955067_126955271_126955349_126955472_126955537_126956237_126956415_126956825
transcript_98450.known	chr9	+	998	1	FSM	ENSMUSG00000032481.18	ENSMUST00000200426.2	998	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATAAAACAGATGTCTGG	1048	False	NA	NA	False	AATAAA	-15	NA	110065461	110066459	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_110065500_110066500
transcript_98451.known	chr9	-	3968	23	FSM	ENSMUSG00000032480.18	ENSMUST00000198425.5	3968	23	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_20	140.114150629448	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCTGTCCTCCCAAGG	NA	False	NA	-1	True	AATAAA	-21	NA	109946490	109913387	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109938093_109938190_109942038_109942094_109944103_109944230_109944558_109944651_109946425
transcript_98452.known	chr9	-	3806	19	FSM	ENSMUSG00000032480.18	ENSMUST00000062368.13	3806	19	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_18	79.7176537599273	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCTGTCCTCCCAAGG	NA	False	NA	-1	True	AATAAA	-21	NA	109930155	109913387	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109929883
transcript_98458.known	chr9	-	1424	2	FSM	ENSMUSG00000032480.18	ENSMUST00000196788.2	1424	2	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	109946442	109943243	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_109944651_109946425
transcript_98459.known	chr9	+	2107	4	FSM	ENSMUSG00000032482.10	ENSMUST00000199736.2	2107	4	0	0	0	0	multi-exon	TRUE	canonical	3	35	junction_3	9.53356643071673	153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCCTTAGTGCCGTGGCC	NA	False	NA	19	True	AATAAA	-20	NA	110075132	110091643	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_110076459_110080026_110080216_110085212_110085289_110091127
transcript_9846.known	chr10	-	2458	14	FSM	ENSMUSG00000040462.14	ENSMUST00000080975.6	2458	14	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_9	22.2351605990131	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATCAGGCTCTGTGGGGA	NA	False	NA	-2	True	AATAAA	-16	NA	126956994	126931518	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_126932242_126932498_126932612_126933800_126933991_126934209_126934507_126934699_126934786_126935271_126935327_126935481_126935577_126935758_126935861_126935953_126936165_126954967_126955067_126955271_126955349_126955472_126955537_126956237_126956415_126956825
transcript_98463.known	chr9	+	1304	7	FSM	ENSMUSG00000054836.13	ENSMUST00000199592.5	1304	7	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_6	18.4157239577729	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCTGGAGGTTGTCTTT	2182	False	NA	7	True	AATAAA	-17	NA	110134240	110150391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_110134418_110139162_110139242_110141636_110141708_110143043_110143163_110144818_110145021_110148637_110148785_110149882
transcript_98464.known	chr9	+	2219	8	FSM	ENSMUSG00000054836.13	ENSMUST00000068071.12	2219	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	68.5809517196686	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGATTGTGTGTGTGTTCCT	2213	False	NA	6	True	AATAAA	-14	NA	110134271	110151170	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_110134418_110138103_110138271_110139162_110139242_110141636_110141708_110143043_110143163_110144818_110145021_110148637_110148785_110149882
transcript_98466.known	chr9	-	5346	25	FSM	ENSMUSG00000036057.12	ENSMUST00000040021.12	5346	25	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_24	14.8742413438654	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTTCACCTACTGCTGC	NA	False	NA	-3	True	AATAAA	-21	NA	110237281	110214149	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_110214801_110214881_110214996_110215085_110215225_110215312_110215418_110215521_110215707_110215798_110217720_110217808_110217989_110218079_110218232_110218308_110218464_110218540_110218859_110219110_110219257_110219537_110219604_110219697_110219813_110219918_110219999_110220111_110220171_110220276_110220334_110220701_110220750_110220834_110220967_110221049_110221131_110221552_110221685_110221770_110221821_110222438_110222516_110222768_110222897_110227188_110227264_110237101
transcript_98467.nnic	chr9	-	854	3	NNC	ENSMUSG00000054792.16	novel	4530	10	NA	NA	-28	-35712	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.5	11	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTTTTATTGTTTGTT	1930	False	NA	NA	False	NA	NA	NA	110305790	110302141	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_110302608_110302686_110302818_110305533
transcript_98469.nnic	chr9	+	1707	3	NNC	ENSMUSG00000044791.17	novel	7442	19	NA	NA	-3412	-15834	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	16	22	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTATAAATCTGCCCTTTCA	NA	False	NA	NA	False	NA	NA	NA	110358252	110377846	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_110358374_110374367_110374384_110376276
transcript_98470.nic	chr9	+	1015	2	ISM	ENSMUSG00000044791.17	ENSMUST00000197399.2	767	6	15144	-466	-283	0	3prime_fragment	FALSE	canonical	3	155	junction_1	0	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTGCTCCCTCAAAATTA	NA	False	NA	20	True	AATAAA	-21	NA	110446385	110447682	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_110446604_110446885
transcript_98474.nic	chr9	-	1048	5	NIC	ENSMUSG00000032491.15	novel	1223	5	NA	NA	7	0	combination_of_known_junctions	TRUE	canonical	2	9	junction_3	51.265851207212	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACTTGGCTCCTTGGACC	8952	False	NA	-5	True	ATTAAA	-25	NA	110453492	110450202	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_110450806_110450907_110451051_110451139_110451183_110452154_110452304_110453382
transcript_98477.known	chr9	-	1223	5	FSM	ENSMUSG00000032491.15	ENSMUST00000035069.14	1223	5	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_3	3.96074487943871	745	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACTTGGCTCCTTGGACC	8924	False	NA	-5	True	ATTAAA	-25	NA	110453520	110450202	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_110450806_110450907_110451051_110451139_110451330_110452154_110452304_110453382
transcript_98478.nnic	chr9	-	1295	5	NNC	ENSMUSG00000032491.15	novel	1223	5	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_4	51.6786948364604	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACTTGGCTCCTTGGACC	8951	False	NA	-5	True	ATTAAA	-25	NA	110453493	110450202	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_110450806_110450907_110451051_110451139_110451330_110452154_110452403_110453382
transcript_98481.known	chr9	+	451	7	FSM	ENSMUSG00000019659.9	ENSMUST00000196347.5	451	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	332.243384684581	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGCTAAAAGGCCAGGAGGA	8517	False	NA	NA	False	NA	NA	NA	110485605	110540323	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_110485727_110529740_110529812_110537513_110537594_110538961_110539024_110539194_110539230_110540153_110540231_110540318
transcript_98489.known	chr9	+	1150	1	FSM	ENSMUSG00000019659.9	ENSMUST00000198077.2	1150	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAACAAAAAAAAAAAAAAAA	8504	False	NA	NA	False	NA	NA	NA	110485592	110486742	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_110485600_110486700
transcript_98490.known	chr9	+	834	7	FSM	ENSMUSG00000019659.9	ENSMUST00000019803.9	834	7	0	0	0	0	multi-exon	FALSE	canonical	3	695	junction_3	22.4258035902098	5889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCCTAGTTGCTCTGGAT	8482	False	NA	29	True	AATAAA	-29	NA	110485570	110540674	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_110485727_110521383_110521452_110537513_110537594_110538961_110539024_110539194_110539230_110540153_110540231_110540318
transcript_98491.known	chr9	+	599	3	FSM	ENSMUSG00000019659.9	ENSMUST00000200296.2	599	3	0	0	0	0	multi-exon	FALSE	canonical	3	709	junction_1	13.5	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAGAGGCCTGTTGTTTCA	6251	False	NA	10	True	AATAAA	-10	NA	110538961	110540655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_110539024_110539194_110539230_110540153
transcript_98492.known	chr9	+	571	3	FSM	ENSMUSG00000019659.9	ENSMUST00000200550.2	571	3	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_2	18.5	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGTTGTTTCATTTCCT	6368	False	NA	16	True	AATAAA	-16	NA	110539078	110540661	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_110539230_110540153_110540231_110540318
transcript_98493.known	chr9	+	937	7	FSM	ENSMUSG00000059741.14	ENSMUST00000079784.12	937	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1.10554159678513	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTATCTCTCTTTCTCT	NA	False	NA	NA	False	AATAAA	-20	NA	110592713	110598866	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_110592969_110595546_110595575_110595688_110595839_110596975_110597150_110598169_110598248_110598482_110598521_110598652
transcript_98497.known	chr9	+	1232	6	FSM	ENSMUSG00000047257.14	ENSMUST00000011391.12	1232	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.35646599662505	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGCTGTCTCTCTTCTCTT	1964	False	NA	NA	False	ATTAAA	-13	NA	110663655	110670378	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_110663808_110665133_110665161_110667488_110667637_110668089_110668365_110669454_110669619_110669912
transcript_98500.known	chr9	+	1456	5	FSM	ENSMUSG00000048752.8	ENSMUST00000051097.6	1456	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	2.54950975679639	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCTCCTTTCTGAGCC	NA	False	NA	NA	False	ATTAAA	-16	NA	110687034	110693697	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_110687528_110690327_110690491_110691329_110691614_110692797_110692965_110693348
transcript_98502.known	chr9	-	2802	6	FSM	ENSMUSG00000049555.11	ENSMUST00000050958.9	2802	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.6	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGCCTGACGTTCTCTCC	NA	False	NA	NA	False	AATAAA	-12	NA	110709181	110694778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_110696026_110696515_110696666_110699698_110699817_110702863_110703095_110704695_110704908_110708337
transcript_98504.nnic	chr9	-	912	3	NNC	ENSMUSG00000096393.2	novel	499	3	NA	NA	-10693	343	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	1	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGTCGTTTGCTAGTCCA	NA	False	NA	NA	False	AATAAA	-23	NA	110756622	110743463	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_110744095_110745519_110745666_110756487
transcript_98505.nnic	chr9	-	905	3	NNC	ENSMUSG00000096393.2	novel	499	3	NA	NA	-10723	343	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0.5	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGTCGTTTGCTAGTCCA	NA	False	NA	NA	False	AATAAA	-23	NA	110756652	110743463	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_110744095_110745519_110745666_110756524
transcript_98507.known	chr9	-	1932	6	FSM	ENSMUSG00000032494.13	ENSMUST00000035075.13	1932	6	0	0	0	0	multi-exon	FALSE	canonical	3	3873	junction_3	373.6995584691	11430	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTAGTGCCTTATTTC	NA	False	NA	-15	True	AGTAAA	-21	NA	110775226	110768670	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
transcript_98511.known	chr9	+	3657	9	FSM	ENSMUSG00000032495.9	ENSMUST00000035076.9	3657	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	105.561593394568	189	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGTTCCACGTGTGTTC	NA	False	NA	8	True	AATAAA	-19	NA	110780612	110813134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_110780745_110786867_110787015_110789869_110790078_110791582_110791740_110795508_110795646_110799081_110799228_110808537_110808694_110809894_110810032_110810697
transcript_9854.known	chr10	-	723	5	FSM	ENSMUSG00000040462.14	ENSMUST00000218798.2	723	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	94.5105814181671	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTCCAGAGCTTGTGCAAA	NA	False	NA	NA	False	NA	NA	NA	126956984	126933877	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_126933991_126934209_126934507_126934699_126934766_126956326_126956415_126956825
transcript_98553.nnic	chr9	-	1001	4	NNC	ENSMUSG00000066319.7	novel	703	3	NA	NA	83	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	5.79271573232759	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTTTCTTTCCTTTGAT	NA	False	NA	NA	False	NA	NA	NA	110819568	110814002	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_110814212_110816134_110816383_110818512_110818732_110819243
transcript_98555.known	chr9	-	703	3	FSM	ENSMUSG00000066319.7	ENSMUST00000198702.2	703	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	2.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGGCCAAGGGGTGGGT	NA	False	NA	NA	False	NA	NA	NA	110819651	110816306	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_110816383_110818512_110818732_110819243
transcript_98559.known	chr9	+	1839	15	FSM	ENSMUSG00000032497.20	ENSMUST00000196981.5	1839	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	57.6262146270679	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATTTGGATTTTGTTTGT	NA	False	NA	46	True	AATGAA	-18	NA	110947180	111053290	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_110947458_110948707_110948780_110970257_110970401_110990370_110990458_111017829_111017875_111019235_111019353_111022114_111022187_111028732_111028904_111034822_111034916_111043208_111043342_111044996_111045047_111048749_111048871_111051225_111051306_111052333_111052439_111053017
transcript_9856.nic	chr10	-	1328	12	ISM	ENSMUSG00000040441.13	ENSMUST00000095270.3	2215	18	3617	-124	-39	124	3prime_fragment	FALSE	canonical	0	0	junction_4	3.81385035698237	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAACTACAGTCACAGTGC	NA	False	NA	NA	False	AGTAAA	-32	NA	127012897	127008170	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr10_-_127008446_127009143_127009251_127009350_127009406_127009492_127009576_127009673_127009678_127009777_127009895_127009967_127010038_127010152_127010260_127010674_127010771_127010853_127010932_127012440_127012555_127012675
transcript_98561.known	chr9	+	3191	14	FSM	ENSMUSG00000032497.20	ENSMUST00000098340.7	3191	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	68.9842619904487	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTGCATCCTGTGGTCTG	NA	False	NA	16	True	GATAAA	-21	NA	110947202	111054736	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_110947458_110948707_110948780_110970257_110970401_110990370_110990458_111017829_111017875_111019235_111019353_111028732_111028904_111034822_111034916_111043208_111043342_111044996_111045047_111048749_111048871_111051225_111051306_111052333_111052439_111053017
transcript_98562.known	chr9	-	3762	18	FSM	ENSMUSG00000032498.10	ENSMUST00000135218.8	3762	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	154.145866298405	562	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATTGGAAAACTTTCTAAA	NA	False	NA	0	True	AATAAA	-42	NA	111100614	111057295	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_111057695_111058907_111059022_111059310_111059404_111059968_111060134_111062390_111062455_111064974_111065084_111068790_111068940_111070292_111070676_111076317_111076472_111076943_111078382_111084695_111084785_111085160_111085204_111086467_111086560_111087556_111087630_111090546_111090621_111093934_111094034_111097285_111097372_111100476
transcript_98563.known	chr9	+	4245	2	FSM	ENSMUSG00000046785.9	ENSMUST00000135807.2	4245	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCCTTGTGTTTGTCTT	NA	False	NA	9	True	NA	NA	NA	111100996	111108157	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_111103596_111106511
transcript_98564.known	chr9	+	3005	5	FSM	ENSMUSG00000032500.11	ENSMUST00000111879.5	3005	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	10.8483869768736	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGCCTTGTTCAATGGT	NA	False	NA	NA	False	AATAAA	-20	NA	111268148	111318186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_111268421_111296545_111298384_111311685_111311819_111313984_111314153_111317592
transcript_98565.nic	chr9	+	2643	4	ISM	ENSMUSG00000032500.11	ENSMUST00000111879.5	3005	5	28981	-494	28981	494	3prime_fragment	FALSE	canonical	3	22	junction_1	4.96655480858378	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGGGTGTGTCATTTAG	7227	False	NA	NA	False	NA	NA	NA	111297129	111318680	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_111298384_111311685_111311819_111313984_111314153_111317592
transcript_98566.nnic	chr9	+	1050	3	NNC	ENSMUSG00000032500.11	novel	3005	5	NA	NA	44457	0	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_1	15	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGCCTTGTTCAATGGT	491	False	NA	NA	False	AATAAA	-20	NA	111312605	111318186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_111312894_111313984_111314153_111317592
transcript_98567.nnic	chr9	+	1481	3	NNC	ENSMUSG00000032500.11	novel	3005	5	NA	NA	44520	494	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_1	15	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGGGTGTGTCATTTAG	554	False	NA	NA	False	NA	NA	NA	111312668	111318680	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_111312894_111313984_111314153_111317592
transcript_98569.nnic	chr9	+	859	2	NNC	ENSMUSG00000032500.11	novel	3005	5	NA	NA	47855	0	at_least_one_novel_splicesite	FALSE	canonical	2	22	junction_1	0	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGCCTTGTTCAATGGT	3889	False	NA	NA	False	AATAAA	-20	NA	111316003	111318186	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_111316269_111317592
transcript_98570.nnic	chr9	-	1068	4	NNC	ENSMUSG00000110784.2	novel	664	4	NA	NA	-3049	-21554	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	0.942809041582063	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCCCTTTATGGTCTGTG	NA	False	NA	NA	False	AATAAA	-18	NA	113184486	113174872	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_113175202_113180756_113180991_113181340_113181509_113184149
transcript_98571.known	chr9	-	5951	18	FSM	ENSMUSG00000032504.16	ENSMUST00000035086.13	5951	18	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_2	35.4147936949624	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGTGGAGTATGAATTC	NA	False	NA	-9	True	AATAAA	-17	NA	113537327	113480811	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_113484176_113485084_113485276_113486153_113486278_113488898_113488994_113490013_113490149_113491336_113491586_113500824_113500995_113501770_113501883_113503392_113503571_113507373_113507498_113509020_113509244_113514374_113514492_113516692_113516794_113518642_113518797_113520520_113520649_113526573_113526644_113529036_113529092_113536966
transcript_98572.known	chr9	-	3223	18	FSM	ENSMUSG00000032504.16	ENSMUST00000111861.4	3223	18	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_12	92.4204698786755	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATTGTTATGTTTTGTCA	NA	False	NA	-8	True	AATAAA	-17	NA	113537312	113483539	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_113484176_113485084_113485276_113486153_113486278_113488898_113488994_113490013_113490149_113491336_113491586_113500824_113500995_113501770_113501883_113503392_113503571_113507373_113507498_113509020_113509244_113514374_113514507_113516692_113516794_113518642_113518797_113520520_113520649_113526573_113526644_113529036_113529092_113536966
transcript_98574.nnic	chr9	+	847	3	Intergenic	novelGene_125	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCTGCTTCCGACCAGGC	NA	False	NA	NA	False	NA	NA	NA	113571288	113587691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Intergenic_chr9_+_113571858_113587214_113587365_113587563
transcript_98576.known	chr9	-	3464	15	FSM	ENSMUSG00000032507.16	ENSMUST00000035090.14	3464	15	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_13	8.10139821643304	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACCCATTGAAGTAGTCT	NA	False	NA	NA	False	AATAAA	-17	NA	113855829	113805774	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_113808009_113808525_113808739_113813052_113813110_113813608_113813654_113814340_113814402_113815473_113815605_113818187_113818263_113818377_113818505_113819685_113819782_113819876_113819946_113829565_113829661_113832217_113832293_113832509_113832565_113847056_113847119_113855760
transcript_98577.nic	chr9	-	2197	15	NIC	ENSMUSG00000032507.16	novel	2257	16	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_14	11.0628999408853	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGCATGTAGAATGGATG	NA	False	NA	-12	True	AGTAAA	-11	NA	113875272	113807104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_113808009_113808525_113808739_113813052_113813110_113813608_113813654_113814340_113814402_113815473_113815605_113818187_113818263_113818377_113818505_113819685_113819782_113819876_113819946_113829565_113829661_113832217_113832293_113832509_113832565_113847056_113847119_113875140
transcript_98579.nnic	chr9	-	562	4	NNC	ENSMUSG00000032507.16	novel	1620	16	NA	NA	14	-1778	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	9.93310961716756	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGGGCTCTCTCTTCTGGGG	NA	False	NA	NA	False	NA	NA	NA	113855815	113834287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_113834608_113835395_113835521_113847056_113847119_113855760
transcript_9858.known	chr10	+	2395	11	FSM	ENSMUSG00000006731.11	ENSMUST00000006914.11	2395	11	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_6	12.214745187682	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTACTTGTGTCTCTGTG	354	False	NA	8	True	GGGGCT	-23	NA	127001093	127008199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_127001389_127001872_127002092_127002586_127002752_127002867_127002975_127003370_127003412_127003569_127003751_127005612_127005712_127005846_127006038_127006459_127006601_127006787_127007029_127007484
transcript_98580.nnic	chr9	-	495	3	NNC	ENSMUSG00000032507.16	novel	1620	16	NA	NA	-31	-1778	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	11	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGGGCTCTCTCTTCTGGGG	NA	False	NA	NA	False	NA	NA	NA	113855873	113834287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_113834608_113847056_113847119_113855760
transcript_98585.known	chr9	+	1285	4	FSM	ENSMUSG00000074039.11	ENSMUST00000124664.8	1285	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	6.12825877028341	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAGGACATGGTGAGA	NA	False	NA	NA	False	NA	NA	NA	114197370	114206297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_114197553_114197911_114197968_114198056_114198132_114205325
transcript_98588.nnic	chr9	+	1451	4	NNC	ENSMUSG00000074039.11	novel	1285	4	NA	NA	-112	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	6.37704215656966	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAGGACATGGTGAGA	NA	False	NA	NA	False	NA	NA	NA	114197258	114206297	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_114197553_114197857_114197968_114198056_114198132_114205325
transcript_98589.nic	chr9	+	451	3	ISM	ENSMUSG00000074039.11	ENSMUST00000124664.8	1285	4	-135	8163	-135	-2098	5prime_fragment	FALSE	canonical	3	21	junction_1	0	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTATGAAATCTAGATTGAC	NA	False	NA	NA	False	ATTAAA	-22	NA	114197235	114198134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_114197553_114197911_114197968_114198056
transcript_98590.nnic	chr9	+	482	3	NNC	ENSMUSG00000074039.11	novel	1285	4	NA	NA	-112	-2098	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	7	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTATGAAATCTAGATTGAC	NA	False	NA	NA	False	ATTAAA	-22	NA	114197258	114198134	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_114197553_114197857_114197968_114198056
transcript_98591.known	chr9	+	425	3	FSM	ENSMUSG00000074039.11	ENSMUST00000147689.2	425	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	3	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCCCAACTTTTTTACAAC	NA	False	NA	NA	False	NA	NA	NA	114197391	114205514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_114197553_114198056_114198132_114205325
transcript_98596.known	chr9	+	2396	16	FSM	ENSMUSG00000045594.11	ENSMUST00000063042.11	2396	16	0	0	0	0	multi-exon	FALSE	canonical	3	295	junction_2	39.3725228497687	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGGGTCCTGTCATTAA	NA	False	NA	24	True	AATAAA	-15	NA	114230143	114303445	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_114230338_114246028_114246199_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293367_114302905
transcript_98598.nic	chr9	+	2286	15	NIC	ENSMUSG00000045594.11	novel	2396	16	NA	NA	-60	0	combination_of_known_junctions	FALSE	canonical	3	112	junction_1	76.8975265651421	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGGGTCCTGTCATTAA	NA	False	NA	24	True	AATAAA	-15	NA	114230083	114303445	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_114230338_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293367_114302905
transcript_9860.known	chr10	+	2212	10	FSM	ENSMUSG00000006731.11	ENSMUST00000217678.2	2212	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_5	17.4384278371675	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTACTTGTGTCTCTGTG	356	False	NA	8	True	GGGGCT	-23	NA	127001095	127008199	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_127001389_127001872_127002092_127002586_127002752_127002867_127002975_127003370_127003412_127005612_127005712_127005846_127006038_127006459_127006601_127006787_127007029_127007484
transcript_98606.nnic	chr9	+	1903	12	NIC	ENSMUSG00000045594.11	novel	2396	16	NA	NA	-16	0	combination_of_known_splicesites	FALSE	canonical	3	23	junction_1	110.549342036909	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGGGTCCTGTCATTAA	NA	False	NA	24	True	AATAAA	-15	NA	114230159	114303445	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_114230338_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293367_114302905
transcript_9862.known	chr10	+	1497	6	FSM	ENSMUSG00000006731.11	ENSMUST00000219523.2	1497	6	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	9.6	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCAATTTTTTTGTTTTG	507	False	NA	NA	False	ATTAAA	-24	NA	127001246	127004392	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_127001389_127001872_127002092_127002586_127002752_127002867_127002975_127003370_127003412_127003569
transcript_98621.known	chr9	+	2921	2	FSM	ENSMUSG00000079260.4	ENSMUST00000111820.4	2921	2	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAGGAAAACAAAAGGAGC	NA	False	NA	NA	False	NA	NA	NA	114230172	114236344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_114230338_114233588
transcript_98622.known	chr9	-	2853	20	FSM	ENSMUSG00000056167.9	ENSMUST00000070117.8	2853	20	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_5	120.736887991548	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGATATGTTGCATGGTG	NA	False	NA	NA	False	NA	NA	NA	114469142	114414945	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114426675_114426862_114426899_114427772_114427904_114430409_114430524_114439712_114439794_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
transcript_98623.nnic	chr9	-	2734	19	NIC	ENSMUSG00000056167.9	novel	2853	20	NA	NA	-32	-137	combination_of_known_splicesites	FALSE	canonical	3	267	junction_4	76.1876338755546	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTTGTTGTTGGTTTG	NA	False	NA	-14	True	TATAAA	-16	NA	114469284	114415170	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114426675_114427772_114427904_114430409_114430524_114439712_114439794_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
transcript_98628.known	chr9	-	1723	10	FSM	ENSMUSG00000056167.9	ENSMUST00000216785.2	1723	10	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_3	40.9103204703612	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGGAATCTAAGACCTCA	NA	False	NA	NA	False	NA	NA	NA	114469252	114446595	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
transcript_98631.known	chr9	-	1441	7	FSM	ENSMUSG00000056167.9	ENSMUST00000213539.2	1441	7	0	0	0	0	multi-exon	FALSE	canonical	3	475	junction_4	26.6817665582072	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTGTGCAGTTTACTGCT	NA	False	NA	NA	False	AATAAA	-18	NA	114469153	114454335	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
transcript_98637.nnic	chr9	+	648	3	Antisense	novelGene_ENSMUSG00000056167.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTGTGGTCATGGTATT	1972	False	NA	NA	False	NA	NA	NA	114412985	114415479	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr9_+_114413348_114413541_114413632_114415283
transcript_98641.known	chr9	+	2601	13	FSM	ENSMUSG00000032435.10	ENSMUST00000047404.7	2601	13	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_8	45.3210767744986	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCAGGGTCAAATAACGTG	2126	False	NA	3	True	AATAAA	-16	NA	114517857	114553370	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_114518096_114518276_114518351_114534121_114534239_114535074_114535306_114538212_114538383_114542577_114542672_114544161_114544298_114544667_114544780_114546930_114546991_114548925_114548971_114549616_114549738_114550772_114550926_114552320
transcript_98643.nic	chr9	+	1135	4	ISM	ENSMUSG00000032435.10	ENSMUST00000047404.7	2601	13	-40	17630	-40	1	5prime_fragment	FALSE	canonical	3	423	junction_3	1.69967317119759	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTTCATTAGAGTGTGG	2086	False	NA	NA	False	AATAAA	-22	NA	114517817	114535740	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_114518096_114518276_114518351_114534121_114534239_114535074
transcript_98644.known	chr9	+	3383	4	FSM	ENSMUSG00000032434.10	ENSMUST00000035007.10	3383	4	0	0	0	0	multi-exon	FALSE	canonical	3	606	junction_3	12.8322510366134	275	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTGTGCCTTCACAGTT	NA	False	NA	19	True	AATAAA	-15	NA	114560240	114578412	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_114560442_114566250_114566428_114569126_114569226_114575506
transcript_98653.known	chr9	-	993	5	FSM	ENSMUSG00000032436.18	ENSMUST00000035009.16	993	5	0	0	0	0	multi-exon	FALSE	canonical	3	1122	junction_1	123.353911571543	5020	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTCCTTATTGCATGAGA	NA	False	NA	-14	True	AATAAA	-16	NA	114610917	114585903	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_114586360_114587872_114587955_114590974_114591074_114592286_114592461_114610735
transcript_98654.known	chr9	-	874	4	FSM	ENSMUSG00000032436.18	ENSMUST00000084867.9	874	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	609.72343457232	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGTTTCCTTATTGCATG	NA	False	NA	-17	True	AATAAA	-13	NA	114610900	114585906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_114586360_114587872_114587955_114592286_114592461_114610735
transcript_98655.known	chr9	-	665	2	FSM	ENSMUSG00000032436.18	ENSMUST00000216760.2	665	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGAGCTGCAGGCCTGGGG	NA	False	NA	NA	False	NA	NA	NA	114610910	114599788	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_114600279_114610735
transcript_98656.known	chr9	-	2183	2	FSM	ENSMUSG00000032436.18	ENSMUST00000214604.2	2183	2	0	0	0	0	multi-exon	FALSE	canonical	3	1444	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGACA	NA	False	NA	NA	False	NA	NA	NA	114610924	114590466	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_114592461_114610735
transcript_98657.known	chr9	-	1064	4	FSM	ENSMUSG00000041012.5	ENSMUST00000047013.4	1064	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	0.816496580927726	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAACGTGTGGAGTTTGTA	NA	False	NA	NA	False	AATAAA	-13	NA	114673220	114618412	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_114618814_114619705_114619823_114625108_114625283_114672848
transcript_98658.nnic	chr9	-	3353	9	NNC	ENSMUSG00000050627.14	novel	4391	8	NA	NA	40	-5	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_1	29.0376910239089	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTATAACTTGATTGTTGT	NA	False	NA	NA	False	NA	NA	NA	114763015	114728413	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_114730448_114731440_114731571_114732728_114732836_114733842_114734077_114739943_114740057_114743393_114743533_114746048_114746190_114749589_114749768_114762738
transcript_98659.nnic	chr9	-	2924	9	NNC	ENSMUSG00000050627.14	novel	4391	8	NA	NA	40	-434	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_1	29.0376910239089	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGGAGCCTATTTTTCC	NA	False	NA	-7	True	AATAAA	-20	NA	114763015	114728842	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_114730448_114731440_114731571_114732728_114732836_114733842_114734077_114739943_114740057_114743393_114743533_114746048_114746190_114749589_114749768_114762738
transcript_9866.known	chr10	-	3307	10	FSM	ENSMUSG00000025417.9	ENSMUST00000013970.9	3307	10	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_3	43.7148447820759	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACAGAAGTTTTTGTTTT	NA	False	NA	-4	True	AATAAA	-23	NA	127047424	127032935	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_127035014_127035181_127035286_127035457_127035726_127036052_127036167_127036708_127036748_127036907_127037055_127041543_127041688_127042482_127042580_127044738_127044837_127047206
transcript_98662.known	chr9	-	4391	8	FSM	ENSMUSG00000050627.14	ENSMUST00000146623.8	4391	8	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_4	10.5540397527222	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTGATTGTTGTATTTT	NA	False	NA	NA	False	NA	NA	NA	114763055	114728408	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_114731571_114732728_114732836_114733842_114734077_114739943_114740057_114743393_114743533_114746048_114746190_114749589_114749768_114762738
transcript_9867.nic	chr10	-	1936	7	NIC	ENSMUSG00000040415.16	novel	1944	6	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_6	51.2694407571953	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCACACCCGTCTTCTGTT	NA	False	NA	0	True	AATAAA	-25	NA	127031600	127026246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_-_127026909_127027204_127027423_127028477_127029227_127029598_127029673_127030278_127030343_127030550_127030682_127031562
transcript_98670.known	chr9	-	1436	7	FSM	ENSMUSG00000050627.14	ENSMUST00000084853.4	1436	7	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_3	11.2989675044522	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGCCT	NA	False	NA	NA	False	NA	NA	NA	114762947	114732413	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_114732836_114733842_114734077_114739943_114740057_114743393_114743533_114746048_114746190_114749589_114749768_114762738
transcript_98672.nnic	chr9	+	1568	8	NNC	ENSMUSG00000040875.13	novel	2477	12	NA	NA	49348	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	21.4466590329	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGTTGGTATTTGTTGAA	-13	True	NA	8	True	ATTAAA	-18	NA	114998954	115061293	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_114999099_115004995_115005151_115036581_115036732_115045616_115046098_115052660_115052848_115055748_115055932_115058927_115059082_115061179
transcript_98675.nic	chr9	+	1181	5	ISM	ENSMUSG00000040875.13	ENSMUST00000046627.6	1872	10	149208	-2	95948	0	3prime_fragment	FALSE	canonical	3	73	junction_2	2.54950975679639	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGTTGGTATTTGTTGAA	6023	False	NA	8	True	ATTAAA	-18	NA	115045554	115061293	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_115046098_115052660_115052848_115055748_115055932_115058927_115059082_115061179
transcript_98676.nic	chr9	+	2229	5	ISM	ENSMUSG00000040875.13	ENSMUST00000046627.6	1872	10	149208	-1050	95948	1048	3prime_fragment	FALSE	canonical	3	73	junction_2	2.54950975679639	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTGTGTCTTGTGTTATT	6023	False	NA	NA	False	ATTAAA	-3	NA	115045554	115062341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_115046098_115052660_115052848_115055748_115055932_115058927_115059082_115061179
transcript_98678.known	chr9	-	374	1	FSM	ENSMUSG00000050621.8	ENSMUST00000053150.8	374	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	123836	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTTATCCCTTGGCCAGG	7274	False	NA	NA	False	NA	NA	NA	114811807	114811433	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_114811400_114811800
transcript_98680.known	chr9	-	4221	16	FSM	ENSMUSG00000032437.11	ENSMUST00000035010.10	4221	16	0	0	0	0	multi-exon	FALSE	canonical	3	623	junction_10	54.7444974403821	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGATTTCTGATACCTTG	NA	False	NA	-34	True	AATAAA	-21	NA	115139489	115071648	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_115073114_115075112_115075326_115077572_115077687_115079846_115080021_115080745_115080918_115081566_115081755_115082900_115083113_115083856_115084012_115085200_115085250_115086503_115086651_115087529_115087629_115095161_115095262_115096377_115096444_115105771_115106060_115109478_115109588_115138819
transcript_98683.nnic	chr9	-	528	2	Genic_Genomic	ENSMUSG00000080848.4	novel	472	1	NA	NA	-44	62	multi-exon	FALSE	canonical	3	299	junction_1	0	374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGGGGGTGGCTCATTTA	NA	False	NA	-1	True	AATAAA	-34	NA	115870176	115869598	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chr9_-_115870001_115870050
transcript_98684.known	chr9	-	472	1	FSM	ENSMUSG00000080848.4	ENSMUST00000117563.2	472	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28896	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTGTGGTAGAGCAGAGTT	NA	False	NA	-63	True	NA	NA	NA	115870132	115869660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_115869700_115870100
transcript_98690.known	chr9	+	3396	8	FSM	ENSMUSG00000039285.13	ENSMUST00000044454.12	3396	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	57.0105611411838	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTGTATTTTGTGATTCA	9585	False	NA	4	True	AATATA	-18	NA	117869566	117892907	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_117870027_117876480_117876702_117878377_117878504_117878964_117879065_117880421_117880571_117884883_117884979_117888124_117888244_117890781
transcript_98691.known	chr9	+	2499	7	FSM	ENSMUSG00000039285.13	ENSMUST00000134433.8	2499	7	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_5	18.3734409769464	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTGTGTTCTTTTTAAC	9665	False	NA	NA	False	AATAAA	-17	NA	117869646	117889552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_117870027_117876480_117876702_117878377_117878504_117878964_117879065_117880421_117880571_117884883_117884979_117888124
transcript_987.known	chr1	+	2268	10	FSM	ENSMUSG00000025925.15	ENSMUST00000188371.7	2268	10	0	0	0	0	multi-exon	FALSE	canonical	3	905	junction_7	69.1671798285292	1879	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAAAGCTGGCATCTTGA	NA	False	NA	NA	False	AATAAA	-24	NA	15875869	15914276	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_15876182_15877864_15877961_15883264_15883387_15886109_15886197_15889157_15889308_15889874_15889988_15901730_15901791_15903624_15903714_15908405_15908513_15913144
transcript_98710.known	chr9	-	1169	4	FSM	ENSMUSG00000039163.11	ENSMUST00000044220.11	1169	4	0	0	0	0	multi-exon	TRUE	canonical	3	173	junction_1	9.03081145609604	2531	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGGAAGGCAAGATTTAAC	NA	False	NA	NA	False	ATTAAA	-17	NA	117979245	117893589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_117894417_117904189_117904281_117944407_117944498_117979084
transcript_98726.nnic	chr9	-	765	5	NNC	ENSMUSG00000098161.2	novel	388	4	NA	NA	-103	304	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	13.5531361684298	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATGAAGGGTTTATTTG	NA	False	NA	NA	False	NA	NA	NA	118235270	118232860	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_118233232_118233371_118233419_118233469_118233558_118233797_118233895_118235108
transcript_98727.nnic	chr9	-	645	4	NNC	ENSMUSG00000098161.2	novel	388	4	NA	NA	-103	26022	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	20.6774165590278	91	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACACCTCTGTTGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	118235270	118207142	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_118207408_118233371_118233493_118233797_118233895_118235108
transcript_98729.nnic	chr9	-	612	4	NNC	ENSMUSG00000098161.2	novel	388	4	NA	NA	-103	25924	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	7.76029781788188	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGGTATTGATTAGGATCA	NA	False	NA	NA	False	NA	NA	NA	118235270	118207240	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_118207408_118233371_118233558_118233797_118233895_118235108
transcript_98735.nnic	chr9	-	751	4	NNC	ENSMUSG00000098161.2	novel	388	4	NA	NA	-103	304	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	19.9555060627944	86	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATGAAGGGTTTATTTG	NA	False	NA	NA	False	NA	NA	NA	118235270	118232860	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_118233232_118233371_118233493_118233797_118233895_118235108
transcript_98736.known	chr9	-	388	4	FSM	ENSMUSG00000098161.2	ENSMUST00000182885.2	388	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	14.6363322667334	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTATCTCCTACTGCAT	NA	False	NA	NA	False	NA	NA	NA	118235167	118233164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_118233232_118233371_118233537_118233797_118233895_118235108
transcript_98737.nnic	chr9	-	816	4	NNC	ENSMUSG00000098161.2	novel	388	4	NA	NA	-103	304	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	13.1402688962847	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATGAAGGGTTTATTTG	NA	False	NA	NA	False	NA	NA	NA	118235270	118232860	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_118233232_118233371_118233558_118233797_118233895_118235108
transcript_98744.known	chr9	+	4461	11	FSM	ENSMUSG00000038708.11	ENSMUST00000211840.2	4461	11	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_10	60.3685348505329	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATAGTGTTCATTGTGCTT	NA	False	NA	7	True	AATAAA	-15	NA	118385847	118411587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_118388852_118389369_118389492_118389809_118389941_118394624_118394736_118396026_118396048_118396248_118396318_118398031_118398108_118401985_118402090_118406209_118406297_118408609_118408675_118410916
transcript_98746.known	chr9	+	7583	24	FSM	ENSMUSG00000038708.11	ENSMUST00000084820.6	7583	24	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_12	49.6666772391441	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATAGTGTTCATTGTGCTT	NA	False	NA	7	True	AATAAA	-15	NA	118335334	118411587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_118335626_118343247_118343338_118351585_118351652_118356077_118356390_118359341_118359390_118361611_118361669_118363674_118363774_118364409_118364543_118365826_118366012_118366309_118366394_118367944_118368093_118377690_118377870_118380899_118381032_118382502_118382659_118384640_118388852_118389369_118389492_118389809_118389941_118394624_118394736_118396026_118396048_118396248_118396318_118398031_118398108_118401985_118402090_118406209_118406297_118410916
transcript_98749.known	chr9	+	2909	20	FSM	ENSMUSG00000038775.15	ENSMUST00000051386.13	2909	20	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_1	8.09945109456443	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGGATTTATCTTGTGAT	4707	False	NA	NA	False	NA	NA	NA	118881845	118900587	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_118881897_118886850_118886923_118887072_118887148_118887378_118887585_118889412_118889522_118890544_118890656_118890962_118891163_118891509_118891589_118891673_118891773_118892315_118892452_118892669_118892771_118894526_118894665_118894927_118895087_118895768_118895949_118896478_118896625_118897379_118897525_118898950_118899137_118899345_118899418_118899624_118899883_118900201
transcript_98756.nic	chr9	+	1653	10	NIC	ENSMUSG00000038775.15	novel	1645	11	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	5.59982363037962	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGGTGTGGCACGTGTGCC	NA	False	NA	3	True	AATAAA	-16	NA	118892493	118900394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_118892670_118894526_118894665_118894927_118895087_118895768_118895949_118896478_118896625_118897379_118897525_118898950_118899137_118899345_118899418_118899624_118899883_118900201
transcript_98757.nic	chr9	+	1467	9	NIC	ENSMUSG00000038775.15	novel	1645	11	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	4	junction_6	9.33993442161132	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGGTGTGGCACGTGTGCC	NA	False	NA	3	True	AATAAA	-16	NA	118892493	118900394	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_118892670_118894526_118894665_118894927_118895087_118895768_118895949_118896478_118896625_118897379_118897525_118899345_118899418_118899624_118899883_118900201
transcript_98760.known	chr9	-	2706	15	FSM	ENSMUSG00000010660.4	ENSMUST00000214470.2	2706	15	0	0	0	0	multi-exon	TRUE	canonical	3	27	junction_4	6.31163486696415	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTCTAGTCTCTTTACAA	8079	False	NA	NA	False	TATAAA	-25	NA	118917329	118900594	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_118900956_118901090_118901241_118901317_118901451_118901542_118901722_118902523_118902641_118902830_118902991_118903232_118903392_118903477_118903628_118903703_118903849_118903940_118904143_118904831_118905064_118905151_118905282_118909989_118910219_118913657_118913823_118917135
transcript_98761.known	chr9	-	2657	15	FSM	ENSMUSG00000010660.4	ENSMUST00000010804.4	2657	15	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_14	9.15540433686184	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTCTAGTCTCTTTACAA	2838	False	NA	NA	False	TATAAA	-25	NA	118922570	118900594	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_118900956_118901090_118901241_118901317_118901451_118901542_118901722_118902523_118902641_118902830_118902991_118903232_118903392_118903477_118903628_118903703_118903849_118903940_118904143_118904831_118905064_118905151_118905282_118909989_118910219_118913657_118913823_118922425
transcript_98763.known	chr9	-	1689	12	FSM	ENSMUSG00000010651.5	ENSMUST00000010795.5	1689	12	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_6	59.9400526973023	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGGGTCCAGCTCTTGCT	NA	False	NA	NA	False	AGTAAA	-35	NA	118986161	118977090	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_118977482_118977801_118977948_118978029_118978086_118978338_118978519_118978667_118978859_118979891_118979973_118980883_118980983_118982737_118982781_118982993_118983074_118984812_118984871_118985658_118985753_118985891
transcript_98769.known	chr9	-	1960	6	FSM	ENSMUSG00000032508.9	ENSMUST00000035092.7	1960	6	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	6.61513416341649	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGACTGACGGTATGTG	NA	False	NA	1	True	AATAAA	-26	NA	119169107	119164999	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_119165966_119166400_119166577_119166819_119166912_119167071_119167253_119167641_119167777_119168697
transcript_9877.known	chr10	-	1925	6	FSM	ENSMUSG00000040415.16	ENSMUST00000130855.8	1925	6	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	50.9643012313521	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCACACCCGTCTTCTGTT	NA	False	NA	0	True	AATAAA	-25	NA	127031578	127026246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_127026909_127027204_127027423_127028477_127029208_127029598_127029673_127030278_127030504_127031562
transcript_98770.known	chr9	+	1762	12	FSM	ENSMUSG00000036138.17	ENSMUST00000039784.12	1762	12	0	0	0	0	multi-exon	TRUE	canonical	3	245	junction_2	23.8777880116768	1302	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCTTGTCATTTCCTTCA	7728	False	NA	28	True	AGTAAA	-19	NA	119170359	119179365	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_119170752_119170890_119170985_119171788_119171847_119173238_119173319_119173531_119173575_119175535_119175635_119176795_119176877_119177646_119177838_119177986_119178167_119178419_119178476_119178557_119178704_119179023
transcript_98771.known	chr9	+	3134	18	FSM	ENSMUSG00000035769.10	ENSMUST00000215822.2	3134	18	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	17.3265002945415	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATCCACCTCTCCTTGCT	NA	False	NA	20	True	AATAAA	-20	NA	119186634	119222395	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_119186774_119188297_119188381_119193562_119193644_119196554_119196642_119197137_119197267_119198685_119198752_119200981_119201055_119203365_119203485_119207309_119207392_119209051_119209093_119209649_119209766_119210567_119210684_119211319_119211394_119212402_119212500_119215384_119215444_119217746_119217835_119219495_119219591_119220806
transcript_98772.known	chr9	+	367	4	FSM	ENSMUSG00000035769.10	ENSMUST00000215305.2	367	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	34.7211110933328	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCTCCGCAGTGCTGAG	NA	False	NA	NA	False	NA	NA	NA	119186634	119190477	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_119186774_119188297_119188381_119190179_119190250_119190402
transcript_98774.known	chr9	+	2093	10	FSM	ENSMUSG00000061393.15	ENSMUST00000165044.3	2093	10	0	0	0	0	multi-exon	TRUE	canonical	3	128	junction_3	24.155872429691	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAAAAAAAAGAATT	NA	False	NA	NA	False	NA	NA	NA	119231183	119262581	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_119231664_119256520_119256729_119257032_119257143_119257266_119257635_119258930_119259075_119259285_119259435_119260289_119260405_119261554_119261694_119261778_119261910_119262332
transcript_98776.nnic	chr9	+	2718	8	NIC	ENSMUSG00000042787.16	novel	2624	7	NA	NA	-15	0	combination_of_known_splicesites	FALSE	canonical	3	31	junction_2	21.0092302358283	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACGCCTGACTGCATATTT	NA	False	NA	NA	False	AAAAAG	-4	NA	119273993	119293305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_119274217_119274352_119274388_119274753_119274868_119276014_119276165_119277454_119277595_119278843_119278921_119281293_119281409_119291441
transcript_98778.known	chr9	+	2571	7	FSM	ENSMUSG00000042787.16	ENSMUST00000164213.5	2571	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	23.8706002345051	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACGCCTGACTGCATATT	NA	False	NA	NA	False	AAAAAG	-3	NA	119274025	119293304	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_119274217_119274352_119274388_119276014_119276165_119277454_119277595_119278843_119278921_119281293_119281409_119291441
transcript_9878.known	chr10	-	2706	3	FSM	ENSMUSG00000025417.9	ENSMUST00000218386.2	2706	3	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_1	9.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAATGCAGA	NA	False	NA	NA	False	NA	NA	NA	127047454	127040219	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_127042580_127044738_127044837_127047206
transcript_98782.known	chr9	+	2624	7	FSM	ENSMUSG00000042787.16	ENSMUST00000214462.2	2624	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	29.590257405662	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACGCCTGACTGCATATTT	NA	False	NA	NA	False	AAAAAG	-4	NA	119274052	119293305	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_119274217_119274753_119274868_119276014_119276165_119277454_119277595_119278843_119278921_119281293_119281409_119291441
transcript_98784.known	chr9	+	3832	6	FSM	ENSMUSG00000042787.16	ENSMUST00000035094.14	3832	6	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	23.8109218637162	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGGTGATTGGCCACAGTG	NA	False	NA	NA	False	NA	NA	NA	119274008	119294583	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_119274217_119276014_119276165_119277454_119277595_119278843_119278921_119281293_119281409_119291441
transcript_98791.known	chr9	+	3845	19	FSM	ENSMUSG00000032512.8	ENSMUST00000036561.8	3845	19	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_17	23.7904950415284	937	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCAGTGTGCTGGACATGT	NA	False	NA	29	True	AATAAA	-17	NA	119723943	119755652	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_119724024_119731351_119731493_119733343_119733423_119734268_119734352_119734433_119734564_119736193_119736283_119736751_119736854_119738416_119738642_119740089_119740165_119741432_119741536_119742693_119742792_119745791_119745900_119746176_119746274_119747527_119747624_119748714_119748821_119749622_119749711_119751683_119751761_119753143_119753334_119753774
transcript_98797.known	chr9	-	3906	9	FSM	ENSMUSG00000032513.9	ENSMUST00000035099.9	3906	9	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_5	11.0898320546346	461	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACAACTTGTTTTTTTTT	NA	False	NA	NA	False	ATTAAA	-19	NA	119766631	119754322	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_119757103_119757292_119757446_119757878_119758030_119758616_119758828_119759038_119759170_119759285_119759373_119761686_119761891_119762327_119762409_119766523
transcript_98805.nic	chr9	-	2974	5	NIC	ENSMUSG00000032515.9	novel	2906	5	NA	NA	-81	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_4	4.71036092035419	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGTCTTCTTGGTGAGG	NA	False	NA	2	True	AATAAA	-17	NA	119813805	119800228	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_119802278_119802429_119802745_119803219_119803480_119806067_119806312_119813699
transcript_98809.known	chr9	+	961	8	FSM	ENSMUSG00000032519.12	ENSMUST00000144768.8	961	8	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_4	67.8187861517887	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTGGCTTCTTTCATGGC	1810	False	NA	NA	False	NA	NA	NA	119939489	119952717	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_119939639_119945567_119945690_119946518_119946604_119948948_119949022_119949322_119949503_119949738_119949914_119951159_119951327_119952707
transcript_98810.nic	chr9	+	1755	8	NIC	ENSMUSG00000032519.12	novel	961	8	NA	NA	-20	-179	combination_of_known_junctions	FALSE	canonical	3	13	junction_3	64.126469430592	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATCACCAGGGTGGAGAC	1740	False	NA	5	True	AATAAA	-30	NA	119939419	119953391	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_119939639_119945567_119945690_119946518_119946604_119948948_119949072_119949322_119949503_119949738_119949914_119951159_119951327_119952707
transcript_98812.known	chr9	+	1791	7	FSM	ENSMUSG00000032519.12	ENSMUST00000035106.12	1791	7	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_3	17.3173002771474	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGAGCACTCTGATTGACA	1760	False	NA	NA	False	ATTAAA	-16	NA	119939439	119953570	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_119939639_119945567_119945690_119946518_119946604_119949322_119949503_119949738_119949914_119951159_119951327_119952707
transcript_98816.known	chr9	+	420	2	FSM	ENSMUSG00000032519.12	ENSMUST00000139079.8	420	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGTGGCCTTTCAGGAAA	1794	False	NA	NA	False	AATAAA	-18	NA	119939473	119940663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_119939639_119940408
transcript_98830.known	chr9	+	1938	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	0	0	0	0	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	83660	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCCATACTCACCAGGGG	NA	False	NA	NA	False	ATTAAA	-26	NA	119956754	119961435	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
transcript_98831.known	chr9	+	1599	6	FSM	ENSMUSG00000032518.7	ENSMUST00000217317.2	1599	6	0	0	0	0	multi-exon	FALSE	canonical	3	2998	junction_2	1090.74407630755	19442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	5	True	AATAAA	-15	NA	119956909	119960625	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
transcript_98832.known	chr9	+	1101	7	FSM	ENSMUSG00000032518.7	ENSMUST00000217356.2	1101	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	1986.85748524313	4931	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	5	True	AATAAA	-15	NA	119956854	119960625	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959110_119959430_119959833_119959963_119960065_119960232_119960465
transcript_98836.known	chr9	+	2609	6	FSM	ENSMUSG00000032517.17	ENSMUST00000174193.8	2609	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	5.38144961882948	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCTGTTCTTCATACAT	NA	False	NA	NA	False	AGTAAA	-26	NA	119978807	120010550	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_119978864_119983752_119983832_119996866_119997077_120002216_120002442_120008392_120008472_120008590
transcript_98845.known	chr9	+	1536	4	FSM	ENSMUSG00000032517.17	ENSMUST00000068698.15	1536	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	2.44948974278318	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGGTGGTGACTTCCTC	NA	False	NA	NA	False	NA	NA	NA	119978772	119998444	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_119978864_119983752_119983832_119996866_119997077_119997288
transcript_98847.known	chr9	+	498	3	FSM	ENSMUSG00000032517.17	ENSMUST00000215512.2	498	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	1.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCAGTTCCTGCCAGCATC	NA	False	NA	NA	False	NA	NA	NA	119978782	119997204	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_119978864_119983752_119983832_119996866
transcript_98848.nic	chr9	+	735	3	NIC	ENSMUSG00000032517.17	novel	1536	4	NA	NA	-4	524	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	6.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCTGGCGTGGCTTCTGTT	NA	False	NA	6	True	NA	NA	NA	119978778	119997728	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_119978864_119996866_119997077_119997288
transcript_98852.known	chr9	+	1035	4	FSM	ENSMUSG00000006941.6	ENSMUST00000007139.6	1035	4	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_2	26.9608770051883	821	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGCAATGCACTTTGTTT	NA	False	NA	34	True	AATAAA	-36	NA	120321556	120324396	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_120321908_120323172_120323337_120323600_120323703_120323978
transcript_98854.known	chr9	+	3453	11	FSM	ENSMUSG00000041608.9	ENSMUST00000047687.9	3453	11	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_7	3.21869538788622	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAAGTATCTTAATTTTAC	NA	False	NA	NA	False	AATAAA	-15	NA	120368883	120397393	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_120368950_120369717_120369770_120373024_120373153_120383134_120383253_120384710_120384862_120386457_120386618_120387401_120387636_120389546_120389820_120389986_120390098_120390964_120391103_120395371
transcript_98857.known	chr9	+	1009	6	FSM	ENSMUSG00000025794.10	ENSMUST00000165532.3	1009	6	0	0	0	0	multi-exon	FALSE	canonical	3	10044	junction_1	2651.61525112525	53889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACCATAGTCGAGTATAA	NA	False	NA	26	True	AATAAA	-35	NA	120400509	120403720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
transcript_98858.known	chr9	+	570	2	FSM	ENSMUSG00000025794.10	ENSMUST00000215063.2	570	2	0	0	0	0	multi-exon	FALSE	canonical	3	15430	junction_1	0	1306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGTGTGGACTCTAAG	737	False	NA	19	True	AATAAA	-23	NA	120402654	120403501	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_120402884_120403160
transcript_98859.known	chr9	+	598	4	FSM	ENSMUSG00000025794.10	ENSMUST00000216990.2	598	4	0	0	0	0	multi-exon	FALSE	canonical	2	573	junction_1	6865.05966632645	3728	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGTGTGGACTCTAAG	NA	False	NA	19	True	AATAAA	-23	NA	120401160	120403501	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_120401264_120402641_120402742_120402829_120402884_120403160
transcript_98862.nnic	chr9	-	1991	2	NNC	ENSMUSG00000111831.2	novel	790	2	NA	NA	6389	1530	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCTTTTATCAGCGTGTT	NA	False	NA	NA	False	NA	NA	NA	120573820	120571125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_120572855_120573558
transcript_98863.known	chr9	-	790	2	FSM	ENSMUSG00000111831.2	ENSMUST00000215385.2	790	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATCTCATCGGCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	120580209	120572655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_120572855_120579618
transcript_98864.known	chr9	-	1266	3	FSM	ENSMUSG00000111528.2	ENSMUST00000215728.2	1266	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTACACTAAATACACATGCA	NA	False	NA	NA	False	NA	NA	NA	120711038	120708762	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_120709084_120709549_120709860_120710403
transcript_98870.nic	chr9	-	684	4	ISM	ENSMUSG00000040936.16	ENSMUST00000164336.8	4629	34	-20	163562	-20	-105730	5prime_fragment	FALSE	canonical	3	29	junction_2	6.0184900284226	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAAACTGTCTATGGAAAT	NA	False	NA	NA	False	AATAAA	-20	NA	121106283	121095171	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_-_121095414_121095579_121095680_121101938_121102123_121106125
transcript_98871.nnic	chr9	-	432	3	NNC	ENSMUSG00000040936.16	novel	4103	37	NA	NA	-31584	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	6.5	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCATGTGTCAAACCCTCT	NA	False	NA	-1	True	AATAAA	-16	NA	120821157	120793519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_-_120793675_120795462_120795549_120820966
transcript_98872.known	chr9	-	4103	37	FSM	ENSMUSG00000040936.16	ENSMUST00000171923.8	4103	37	0	0	0	0	multi-exon	TRUE	canonical	2	8	junction_10	8.07583653886513	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCATGTGTCAAACCCTCT	NA	False	NA	-1	True	AATAAA	-16	NA	121106263	120793519	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_120793675_120795462_120795549_120873751_120873938_120902983_120903083_120910629_120910797_120932612_120932719_120955515_120955565_120970899_120970993_120974052_120974198_120974400_120974453_120981155_120981251_120981343_120981396_120986038_120986096_120986231_120986354_120989335_120989470_120997249_120997378_121017283_121017467_121021699_121021862_121033789_121033874_121037222_121037331_121073431_121073511_121077990_121078038_121079927_121080110_121081718_121081780_121084182_121084288_121085363_121085461_121086144_121086215_121086365_121086485_121087794_121087888_121089074_121089151_121090973_121091058_121091633_121091736_121092694_121092858_121095273_121095414_121095579_121095680_121101938_121102123_121106125
transcript_98873.known	chr9	+	3548	15	FSM	ENSMUSG00000006932.18	ENSMUST00000154356.8	3548	15	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_10	170.570232108749	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGTGTCATTTTGTTTGT	NA	False	NA	26	True	ATTAAA	-15	NA	120762540	120789572	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_120762705_120779238_120779300_120779587_120779816_120779959_120780214_120780332_120780572_120780651_120780854_120781924_120782070_120784213_120784318_120784394_120784734_120784879_120785043_120786175_120786293_120786582_120786734_120786824_120786947_120787657_120787719_120788374
transcript_98875.known	chr9	+	1292	1	FSM	ENSMUSG00000006932.18	ENSMUST00000215573.2	1292	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12809	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTCATTTTGTTTGTT	NA	False	NA	27	True	ATTAAA	-16	NA	120788281	120789573	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_120788300_120789600
transcript_98877.known	chr9	-	691	3	FSM	ENSMUSG00000032532.8	ENSMUST00000035120.6	691	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTGTGTCCAGTGGGAG	NA	False	NA	-1	True	ATTAAA	-22	NA	121324760	121318889	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_121319268_121323382_121323599_121324663
transcript_98879.known	chr9	-	2669	7	FSM	ENSMUSG00000061536.14	ENSMUST00000111560.10	2669	7	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_5	6.55108133567785	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAGCCTAAAACTGTATTG	NA	False	NA	NA	False	ATTAAA	-9	NA	121534095	121512099	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_121513925_121514588_121514655_121517264_121517384_121519301_121519482_121521975_121522140_121524599_121524809_121533989
transcript_98880.known	chr9	-	938	6	FSM	ENSMUSG00000061536.14	ENSMUST00000139193.2	938	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	7.62627038597505	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCAAGGTCACAGATTCTG	NA	False	NA	NA	False	NA	NA	NA	121534045	121513616	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_121513925_121514588_121514655_121517264_121517384_121519301_121519482_121524599_121524809_121533989
transcript_98882.known	chr9	+	315	3	FSM	ENSMUSG00000032526.12	ENSMUST00000215104.2	315	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	206	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACTCGCTACCAACTCT	NA	False	NA	-65	True	AAAAAG	-23	NA	121539465	121541820	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_121539514_121539704_121539782_121541630
transcript_98883.known	chr9	+	577	3	FSM	ENSMUSG00000032526.12	ENSMUST00000035113.11	577	3	0	0	0	0	multi-exon	FALSE	canonical	3	377	junction_1	21	1346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGTGTCCCATGTCAACT	NA	False	NA	11	True	AATAAA	-16	NA	121539394	121541987	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_121539538_121539704_121539782_121541630
transcript_98884.known	chr9	+	479	3	FSM	ENSMUSG00000032526.12	ENSMUST00000215833.2	479	3	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	185.5	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGATACACGTCCGTCCTC	NA	False	NA	-6	True	NA	NA	NA	121539437	121541970	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_121539538_121539704_121539782_121541668
transcript_98891.known	chr9	+	7022	17	FSM	ENSMUSG00000032525.16	ENSMUST00000035112.13	7022	17	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	11.4065496535981	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTGGTCTTTCTTTGCT	NA	False	NA	9	True	AATACA	-19	NA	121548241	121585909	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_121548362_121548524_121548612_121556381_121556457_121557643_121557752_121558701_121558747_121560543_121560632_121570187_121570218_121570663_121570810_121571630_121571854_121573054_121573211_121574966_121575055_121575510_121575657_121577096_121579953_121580732_121580829_121581472_121581530_121582056_121582159_121583310
transcript_98892.known	chr9	+	2942	12	FSM	ENSMUSG00000032525.16	ENSMUST00000182225.8	2942	12	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_7	12.3656415486254	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGACAAAAAACACAA	NA	False	NA	NA	False	AAAAAG	-23	NA	121548509	121578906	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_121548612_121556381_121556457_121557643_121557752_121558701_121558747_121560543_121560632_121570187_121570218_121570663_121570810_121571705_121571854_121573054_121573211_121574966_121575055_121575510_121575657_121577096
transcript_98894.known	chr9	-	713	6	FSM	ENSMUSG00000038412.9	ENSMUST00000213124.2	713	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1083.25775326097	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACACGGTATTGAATATT	NA	False	NA	-26	True	AATAAA	-19	NA	121686601	121678604	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_121678756_121679253_121679389_121681556_121681672_121685515_121685652_121685786_121685939_121686577
transcript_98896.known	chr9	-	605	5	FSM	ENSMUSG00000038412.9	ENSMUST00000215300.2	605	5	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_3	1102.00691921603	673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACGGTATTGAATATTG	NA	False	NA	-25	True	AATAAA	-20	NA	121686628	121678603	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_121678756_121679253_121679389_121681556_121681676_121685503_121685652_121686577
transcript_98900.known	chr9	-	1980	3	FSM	ENSMUSG00000038412.9	ENSMUST00000215007.2	1980	3	0	0	0	0	multi-exon	FALSE	canonical	3	2040	junction_2	90	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATCAGATGTCTTGTTTTT	NA	False	NA	-3	True	ATTAAA	-13	NA	121686678	121677628	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_121679389_121681556_121681676_121686577
transcript_98901.known	chr9	-	505	4	FSM	ENSMUSG00000038412.9	ENSMUST00000216914.2	505	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	1039.92350146003	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTAGGTTCATCAGGACA	NA	False	NA	NA	False	NA	NA	NA	121686679	121679256	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_121679389_121681556_121681676_121685786_121685939_121686577
transcript_98902.nic	chr9	+	693	5	NIC	ENSMUSG00000043773.6	novel	1900	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	4.81534007106456	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGGTGCTTGTGTCCTTTT	6258	False	NA	NA	False	ATTAAA	-23	NA	121766288	121771063	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_121766386_121767041_121767229_121768484_121768568_121769749_121769877_121770864
transcript_98903.known	chr9	+	1900	5	FSM	ENSMUSG00000043773.6	ENSMUST00000214777.2	1900	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.81534007106456	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGTCATGATGT	6258	False	NA	NA	False	NA	NA	NA	121766288	121776082	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_121766386_121767041_121767229_121768484_121768568_121769749_121769877_121774676
transcript_98905.known	chr9	+	456	4	FSM	ENSMUSG00000043773.6	ENSMUST00000215356.2	456	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	3.2659863237109	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGGTGCTTGTGTCCTTTT	7151	False	NA	NA	False	ATTAAA	-23	NA	121767181	121771063	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_121767229_121768484_121768568_121769749_121769877_121770864
transcript_98906.known	chr9	-	2365	2	FSM	ENSMUSG00000066235.8	ENSMUST00000084743.7	2365	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAAGTCTTTTTCTGATGC	NA	False	NA	-3	True	ATTAAA	-18	NA	121825091	121810674	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_121812890_121824941
transcript_98907.known	chr9	-	2653	13	FSM	ENSMUSG00000037949.9	ENSMUST00000042546.4	2653	13	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	6.44797556515911	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGCAAATGTTTCAAGCTG	NA	False	NA	3	True	ATTAAA	-37	NA	122123489	122004939	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_122005545_122030836_122030954_122080212_122080342_122082001_122082194_122086121_122086305_122087982_122088058_122088600_122088657_122090149_122090720_122092735_122092856_122100264_122100400_122101432_122101631_122104576_122104730_122123369
transcript_98910.known	chr9	+	3157	7	FSM	ENSMUSG00000032540.17	ENSMUST00000156520.8	3157	7	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_5	12.9925192151313	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGTGGGTGAGCTGTGTGT	NA	False	NA	4	True	AATAAA	-17	NA	122180672	122210589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_122180905_122194200_122194287_122196953_122197327_122204970_122205126_122206923_122207036_122207886_122208074_122208577
transcript_98912.nic	chr9	+	1252	6	NIC	ENSMUSG00000032540.17	novel	1386	8	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	35.2363448728724	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAATTGTGATTTTTCA	NA	False	NA	15	True	AATAAA	-20	NA	122180792	122208890	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_+_122180905_122196953_122197327_122204970_122205126_122206923_122207036_122207886_122208074_122208577
transcript_98913.known	chr9	+	2576	5	FSM	ENSMUSG00000032540.17	ENSMUST00000111497.5	2576	5	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	33.7073804974519	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGTGGGTGAGCTGTGTGT	NA	False	NA	4	True	AATAAA	-17	NA	122180794	122210589	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_122180905_122204970_122205126_122206923_122207036_122207886_122208074_122208577
transcript_98916.known	chr9	+	467	2	FSM	ENSMUSG00000032540.17	ENSMUST00000176005.2	467	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGCCTGTGCAATTATGTC	NA	False	NA	NA	False	NA	NA	NA	122180796	122188344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_122180905_122187985
transcript_98918.known	chr9	+	3049	11	FSM	ENSMUSG00000046603.17	ENSMUST00000052740.14	3049	11	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	5.03984126734166	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCGTTCCAGGATTTCCA	NA	False	NA	22	True	AATAAA	-22	NA	122634603	122665399	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_122634754_122637831_122637902_122640822_122640959_122643496_122643654_122647838_122648092_122653527_122653651_122655257_122655356_122655911_122656004_122660684_122660924_122662590_122662723_122663800
transcript_98921.known	chr9	+	2909	11	FSM	ENSMUSG00000046603.17	ENSMUST00000136274.3	2909	11	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	5.03984126734166	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACACAGCTGCGTTCCAGG	NA	False	NA	15	True	AATAAA	-15	NA	122634660	122665392	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_122634754_122637831_122637902_122640822_122640959_122643496_122643654_122647914_122648092_122653527_122653651_122655257_122655356_122655911_122656004_122660684_122660924_122662590_122662723_122663800
transcript_98928.known	chr9	-	6189	7	FSM	ENSMUSG00000047036.9	ENSMUST00000216063.2	6189	7	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_6	50.4669859082813	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATAATTATACAGAAGTTC	NA	False	NA	6	True	AATAAA	-35	NA	122695071	122677974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_122683054_122683771_122683883_122685763_122685891_122686167_122686227_122686534_122686704_122690773_122691325_122694978
transcript_98933.known	chr9	-	1220	6	FSM	ENSMUSG00000047036.9	ENSMUST00000214626.2	1220	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	51.7818501021352	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTAAGAGCGGTCATGTTC	NA	False	NA	NA	False	NA	NA	NA	122691409	122673593	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_122673712_122683771_122683883_122685763_122685891_122686167_122686227_122686534_122686704_122690773
transcript_98935.known	chr9	+	2010	4	FSM	ENSMUSG00000057895.12	ENSMUST00000051667.14	2010	4	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	7.71722460186015	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTTTGTTTTAACTGTAT	4874	False	NA	11	True	AATAAA	-22	NA	122752136	122760093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_122752284_122754072_122754362_122755374_122755520_122758664
transcript_98938.known	chr9	-	723	2	FSM	ENSMUSG00000032551.8	ENSMUST00000118422.2	723	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTCTTAGTCACTGTTCT	NA	False	NA	NA	False	ATTAAA	-27	NA	122780018	122776599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_122777174_122779869
transcript_9894.known	chr10	+	1784	14	FSM	ENSMUSG00000025410.11	ENSMUST00000026479.11	1784	14	0	0	0	0	multi-exon	FALSE	canonical	3	604	junction_8	36.9826442582377	964	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAACCAGAGTTTCAAAATA	9216	False	NA	16	True	AATAAA	-18	NA	127102255	127117819	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_127102404_127103282_127103352_127110582_127110680_127110862_127110925_127111692_127111792_127112252_127112414_127112570_127112719_127113123_127113190_127113355_127113395_127113563_127113642_127113735_127113808_127113988_127114092_127114185_127114278_127117269
transcript_98940.known	chr9	+	4858	35	FSM	ENSMUSG00000036768.7	ENSMUST00000040717.7	4858	35	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_12	27.7337969778696	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTATAAATACTATGCCT	NA	False	NA	8	True	AATAAA	-18	NA	122780110	122847798	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_122780218_122788181_122788225_122788871_122789056_122792544_122792622_122795013_122795052_122800753_122800852_122804713_122804894_122806904_122807115_122808534_122808661_122808804_122808928_122813864_122813989_122815209_122815287_122815506_122815717_122816910_122817089_122820150_122820293_122820925_122821068_122822907_122823106_122824780_122824889_122825355_122825462_122826846_122827013_122828239_122828391_122828579_122828666_122830109_122830180_122831099_122831187_122832634_122832740_122833635_122833759_122836378_122836526_122838381_122838484_122838824_122838990_122840592_122840703_122843004_122843078_122843533_122843572_122846309_122846476_122846651_122846784_122847132
transcript_98942.nnic	chr9	+	748	7	NNC	ENSMUSG00000036768.7	novel	1494	13	NA	NA	-5	683	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	87.5595035770913	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACCTTTAATTTTAATAT	NA	False	NA	NA	False	NA	NA	NA	122780105	122802093	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_122780218_122788181_122788225_122788871_122789056_122792544_122792622_122795013_122795052_122800753_122800852_122801897
transcript_98943.known	chr9	+	1057	6	FSM	ENSMUSG00000036768.7	ENSMUST00000215176.2	1057	6	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_5	25.0391693152948	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATTTAAAAAAAAAAAATCT	NA	False	NA	NA	False	NA	NA	NA	122780159	122801410	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_122780218_122788181_122788225_122788871_122789056_122792544_122792622_122795013_122795052_122800753
transcript_98945.known	chr9	+	1752	3	FSM	ENSMUSG00000036768.7	ENSMUST00000214921.2	1752	3	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_2	9.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAAAGAAACCAGTAAA	NA	False	NA	NA	False	AATACA	-40	NA	122780150	122790513	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_122780218_122788181_122788225_122788871
transcript_98946.known	chr9	+	882	1	FSM	ENSMUSG00000036768.7	ENSMUST00000216730.2	882	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	AAAAAG	-39	NA	122780146	122781028	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_122780100_122781000
transcript_98947.known	chr9	-	5376	7	FSM	ENSMUSG00000025786.18	ENSMUST00000238520.2	5376	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	93.3196418529109	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTGCCAGAATCTGTTCT	8771	False	NA	NA	False	NA	NA	NA	122942212	122895224	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_122899684_122909415_122909547_122912609_122912692_122913278_122913376_122918096_122918222_122929327_122929658_122942060
transcript_98948.known	chr9	-	6987	7	FSM	ENSMUSG00000025786.18	ENSMUST00000147563.9	6987	7	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_1	22.8454955443445	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATACAAATCATTTAAGTG	8713	False	NA	NA	False	NA	NA	NA	122942270	122901374	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_122907387_122909415_122909547_122912609_122912692_122913278_122913376_122918096_122918222_122929327_122929658_122942060
transcript_98952.known	chr9	+	1041	3	FSM	ENSMUSG00000066233.7	ENSMUST00000084733.7	1041	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	1.5	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACTGGATATGGAATTTG	NA	False	NA	NA	False	AATAAA	-16	NA	122850390	122852552	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_122850636_122851230_122851378_122851903
transcript_98954.known	chr9	+	631	3	FSM	ENSMUSG00000066233.7	ENSMUST00000213514.2	631	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	14.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCATATCTCCTCTGTCCC	NA	False	NA	NA	False	NA	NA	NA	122850439	122852770	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_122850636_122851230_122851378_122852482
transcript_98956.known	chr9	-	1727	8	FSM	ENSMUSG00000025786.18	ENSMUST00000138622.8	1727	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	121.810994443634	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAAAAAAGTCCTCATG	8740	False	NA	-64	True	NA	NA	NA	122942243	122907104	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_122907387_122909415_122909547_122912609_122912692_122913278_122913376_122918096_122918222_122919700_122920198_122929327_122929658_122942060
transcript_98962.known	chr9	+	1053	8	FSM	ENSMUSG00000025785.6	ENSMUST00000026891.5	1053	8	0	0	0	0	multi-exon	FALSE	canonical	3	1140	junction_3	103.377058995362	5907	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTGTTGTTAGCATCTCC	NA	False	NA	15	True	AATAAA	-20	NA	122942279	122965194	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_122942388_122947955_122948058_122948305_122948401_122956870_122957037_122959588_122959660_122959891_122960016_122960949_122961106_122964963
transcript_98963.known	chr9	-	1370	1	FSM	ENSMUSG00000058492.6	ENSMUST00000216438.2	1370	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAGAAAAAAA	NA	False	NA	NA	False	ATTAAA	-14	NA	123137034	123135664	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_123135700_123137000
transcript_98966.nic	chr9	+	1102	8	ISM	ENSMUSG00000035202.9	ENSMUST00000038863.9	3894	21	-27	44357	-27	-2268	5prime_fragment	FALSE	canonical	3	39	junction_6	7.10848874549985	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCATGCCTACAGATCTCA	NA	False	NA	NA	False	ATTAAA	-23	NA	123195964	123247372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_123196173_123200919_123201169_123206765_123206895_123221847_123221940_123224015_123224077_123238678_123238769_123240937_123241082_123247243
transcript_98968.nic	chr9	+	1046	5	ISM	ENSMUSG00000035202.9	ENSMUST00000038863.9	3894	21	-27	67346	-27	0	5prime_fragment	FALSE	canonical	3	41	junction_4	7.58287544405155	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGGTCCTTTAGGTGA	NA	False	NA	NA	False	AATAAA	-23	NA	123195964	123224383	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_+_123196173_123200919_123201169_123206765_123206895_123221847_123221940_123224015
transcript_98971.known	chr9	+	554	3	FSM	ENSMUSG00000035202.9	ENSMUST00000215464.2	554	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	1.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGGTCCTTTAGGTGA	NA	False	NA	NA	False	AATAAA	-23	NA	123206800	123224383	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_123206895_123221847_123221940_123224015
transcript_98973.known	chr9	+	3433	20	FSM	ENSMUSG00000025240.11	ENSMUST00000238984.2	3433	20	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_14	24.7475900502736	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCGCTGTTGGTACTGTTT	NA	False	NA	17	True	AATAAA	-18	NA	123358946	123421663	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_+_123358987_123371408_123371507_123376048_123376124_123377926_123378055_123381732_123381883_123388289_123388350_123389630_123389665_123395455_123395558_123397988_123398075_123399013_123399101_123399561_123399631_123406041_123406122_123408013_123408113_123411312_123411452_123414151_123414222_123414349_123414423_123415408_123415503_123415626_123415720_123416609_123416668_123419865
transcript_98982.known	chr9	-	4070	10	FSM	ENSMUSG00000025245.15	ENSMUST00000026274.14	4070	10	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_9	8.45905169363301	535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGGAAGGAAGGAAAGGGAA	NA	False	NA	NA	False	NA	NA	NA	123546690	123526076	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_123529169_123529934_123530039_123531189_123531367_123536973_123537052_123537137_123537204_123538618_123538691_123540100_123540162_123541494_123541690_123544364_123544490_123546590
transcript_98983.known	chr9	-	6541	9	FSM	ENSMUSG00000025245.15	ENSMUST00000165754.8	6541	9	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_8	33.4168744798193	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCATACACAAAATCAATATT	NA	False	NA	NA	False	AATAAA	-13	NA	123546690	123523480	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_123529169_123529934_123530039_123531189_123531367_123536973_123537052_123537137_123537204_123538618_123538691_123540100_123540162_123541494_123541690_123546590
transcript_98985.known	chr9	-	1179	4	FSM	ENSMUSG00000025241.17	ENSMUST00000183700.2	1179	4	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	6.48074069840786	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TCAAAAAAAAAAAAAAAAAT	9323	False	NA	NA	False	NA	NA	NA	123680951	123667246	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_123668063_123669606_123669714_123672523_123672674_123680845
transcript_98986.known	chr9	-	461	4	FSM	ENSMUSG00000110834.2	ENSMUST00000214845.2	461	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	43.70608907489	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAATCCCTATGAGTACT	NA	False	NA	NA	False	NA	NA	NA	124044769	124032987	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_124033196_124033755_124033817_124033999_124034127_124044704
transcript_98988.nic	chr9	-	1221	3	NIC	ENSMUSG00000110834.2	novel	461	4	NA	NA	-190	10	intron_retention	FALSE	canonical	3	93	junction_2	20	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGAGTACTGGAATGTGAA	NA	False	NA	NA	False	NA	NA	NA	124044959	124032977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr9_-_124033817_124033999_124034127_124044704
transcript_98991.known	chr9	-	2623	4	FSM	ENSMUSG00000074829.11	ENSMUST00000177714.8	2623	4	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	8.73053390247253	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACTATTATCATGTTTTG	NA	False	NA	NA	False	AATAAA	-23	NA	124075326	124054433	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr9_-_124056732_124057727_124057789_124057987_124058115_124075189
transcript_98992.nic	chr9	-	541	4	ISM	ENSMUSG00000074829.11	ENSMUST00000071300.13	795	5	-68	1318	-14	-1116	5prime_fragment	FALSE	non_canonical	0	0	junction_1	0.471404520791032	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTTAGTATAGTCTCATAA	NA	False	NA	NA	False	NA	NA	NA	124075340	124057588	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_-_124057789_124057987_124058115_124067285_124067349_124075189
transcript_98993.nic	chr9	-	537	4	ISM	ENSMUSG00000074829.11	ENSMUST00000185949.2	634	5	-23	1116	2	-1116	5prime_fragment	FALSE	non_canonical	0	0	junction_1	1.24721912892465	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTTAGTATAGTCTCATAA	NA	False	NA	NA	False	NA	NA	NA	124075324	124057588	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_-_124057789_124057987_124058115_124074305_124074381_124075189
transcript_98995.nic	chr9	-	465	3	ISM	ENSMUSG00000074829.11	ENSMUST00000177714.8	2623	4	-1	3155	-1	-1116	5prime_fragment	FALSE	non_canonical	0	0	junction_1	3.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTTAGTATAGTCTCATAA	NA	False	NA	NA	False	NA	NA	NA	124075327	124057588	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chr9_-_124057789_124057987_124058115_124075189
transcript_99.known	SIRV1	-	1561	6	FSM	SIRV1A	SIRV101	1561	6	0	0	0	0	multi-exon	FALSE	canonical	3	1499	junction_5	1975.53128044078	4373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10786	1000	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_SIRV1_-_1485_6337_6474_6560_6814_7552_7815_10282_10367_10444
transcript_99000.nnic	chr9	+	1184	8	NNC	ENSMUSG00000093803.6	novel	385	3	NA	NA	-1061	1094	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	87.3379549070559	147	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCCTGGGGTGCACAGTC	NA	False	NA	17	True	AATAAA	-18	NA	124199355	124202490	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr9_+_124199575_124199674_124199836_124200091_124200141_124200416_124200507_124200880_124201057_124201276_124201402_124201794_124201908_124202239
transcript_99007.nnic	chr9	-	876	2	Antisense	novelGene_ENSMUSG00000093803.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	0	138	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTGGCCCGGGCGCAGGC	NA	False	NA	NA	False	NA	NA	NA	124196745	124195473	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr9_-_124196190_124196585
transcript_99009.nnic	chr9	-	1224	2	Antisense	novelGene_ENSMUSG00000093803.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	70	junction_1	0	80	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTGGCCCGGGCGCAGGC	NA	False	NA	NA	False	NA	NA	NA	124198448	124195473	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr9_-_124196190_124197940
transcript_99012.nnic	chr9	-	1377	2	Antisense	novelGene_ENSMUSG00000093803.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	70	junction_1	0	71	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGCGGGGAGTGATGGCGT	NA	False	NA	-3	True	AATAAA	-13	NA	124198824	124195696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Antisense_chr9_-_124196190_124197940
transcript_99016.known	chrM	+	955	1	FSM	ENSMUSG00000064337.1	ENSMUST00000082388.1	955	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTGTAGCTTAATATTA	-3	True	NA	-47	True	NA	NA	NA	69	1024	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrM_+_100_1000
transcript_99017.known	chrM	+	1582	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	172	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAGGGTGGCAGAGCCAGG	-3	True	NA	34	True	AATAAA	-35	NA	1093	2675	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrM_+_1100_2700
transcript_99018.known	chrM	+	957	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1350	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATATGTCTGATAAAAGAA	-2	True	NA	-17	True	NA	NA	NA	2750	3707	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrM_+_2800_3700
transcript_99019.known	chrM	+	1038	1	FSM	ENSMUSG00000064345.1	ENSMUST00000082396.1	1038	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	488	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTTAGGATATACTAGTC	-3	True	NA	-27	True	NA	NA	NA	3913	4951	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrM_+_3900_5000
transcript_99020.known	chrM	+	1545	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	84	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGGAAGGAATCGAACCC	1	True	NA	NA	False	AGTAAA	-5	NA	5327	6872	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrM_+_5300_6900
transcript_99021.known	chrM	+	684	1	FSM	ENSMUSG00000064354.1	ENSMUST00000082405.1	684	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	611	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCACTATGAAGCTAAGAG	-1	True	NA	NA	False	ACTAAA	-35	NA	7012	7696	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrM_+_7000_7700
transcript_99022.known	chrM	+	681	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	490	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	150	False	NA	NA	False	AATACA	-4	NA	7926	8607	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrM_+_7900_8600
transcript_99023.known	chrM	+	784	1	FSM	ENSMUSG00000064358.1	ENSMUST00000082409.1	784	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	446	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCCCTTAGTATAATTAAT	-2	True	NA	NA	False	NA	NA	NA	8606	9390	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrM_+_8600_9400
transcript_99024.known	chrM	+	348	1	FSM	ENSMUSG00000064360.1	ENSMUST00000082411.1	348	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGGTAATTAGTTTAAAAAA	-2	True	NA	NA	False	AAAAAG	-21	NA	9458	9806	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrM_+_9500_9800
transcript_99025.known	chrM	+	297	1	FSM	ENSMUSG00000065947.1	ENSMUST00000084013.1	297	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTATTCTTCCCTCACTA	-1	True	NA	NA	False	NA	NA	NA	9876	10173	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrM_+_9900_10200
transcript_99026.known	chrM	+	1378	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	389	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	69	False	NA	13	True	NA	NA	NA	10166	11544	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrM_+_10200_11500
transcript_99027.known	chrM	+	1824	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCTCGATAATAATAAAAATA	-4	True	NA	-12	True	NA	NA	NA	11741	13565	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrM_+_11700_13600
transcript_99028.known	chrM	+	1144	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1355	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-2	True	NA	12	True	ACTAAA	-12	NA	14144	15288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrM_+_14100_15300
transcript_99029.known	chrX	+	3036	2	FSM	ENSMUSG00000073295.5	ENSMUST00000103007.4	3036	2	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGCAATAAGATCCTGAA	NA	False	NA	NA	False	AATAAA	-14	NA	5959506	5967164	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_5960459_5965080
transcript_99030.known	chrX	-	1838	2	FSM	ENSMUSG00000073294.5	ENSMUST00000101698.4	1838	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCTTTGTTGTGGTACAA	NA	False	NA	1	True	AATAAA	-24	NA	5995473	5993272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_5994830_5995192
transcript_99031.known	chrX	-	2201	1	FSM	ENSMUSG00000073294.5	ENSMUST00000117544.2	2201	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCTTTGTTGTGGTACAA	NA	False	NA	1	True	AATAAA	-24	NA	5995473	5993272	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_5993300_5995500
transcript_99032.known	chrX	+	119	1	FSM	ENSMUSG00000118952.1	ENSMUST00000240411.1	119	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAATATTCTAAGGT	NA	False	NA	NA	False	NA	NA	NA	6018944	6019063	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_6018900_6019100
transcript_99034.known	chrX	-	1775	2	FSM	ENSMUSG00000073293.5	ENSMUST00000103006.4	1775	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGGAGTCCTTATAATTA	NA	False	NA	8	True	NA	NA	NA	6085069	6080749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_6081851_6084395
transcript_99035.known	chrX	-	8390	12	FSM	ENSMUSG00000004317.15	ENSMUST00000004428.14	8390	12	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_11	7.74596669241483	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAGTCTGTTTCTGAAGA	NA	False	NA	0	True	AATAAA	-22	NA	7054953	7020048	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_7026059_7027474_7027692_7027836_7028236_7029568_7029756_7031818_7032362_7032594_7032676_7036547_7036755_7037382_7037506_7044539_7044728_7050029_7050130_7052422_7052575_7054770
transcript_99038.known	chrX	-	885	4	FSM	ENSMUSG00000063018.7	ENSMUST00000150671.2	885	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	23.5372045918796	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTTACTTTGTGGCTTAT	7929	False	NA	-31	True	NA	NA	NA	7311382	7278344	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_7278772_7290368_7290524_7295745_7295914_7311247
transcript_99039.known	chrX	-	874	2	FSM	ENSMUSG00000063018.7	ENSMUST00000154346.2	874	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTATATGTGTTCATTA	NA	False	NA	NA	False	AATAAA	-31	NA	7287324	7278055	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_7278772_7287166
transcript_99040.known	chrX	-	540	2	FSM	ENSMUSG00000063018.7	ENSMUST00000128571.2	540	2	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_1	0	1644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACTTTGTGGCTTATTAT	NA	False	NA	-28	True	NA	NA	NA	7289227	7278341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_7278772_7289117
transcript_99041.known	chrX	-	2353	17	FSM	ENSMUSG00000031143.5	ENSMUST00000033483.5	2353	17	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_12	25.3807721267498	245	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACGCTTAGGCATGGATT	NA	False	NA	-9	True	AATAAA	-19	NA	7471756	7460047	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_7460407_7460768_7460844_7460922_7460983_7461198_7461295_7461534_7461643_7461724_7461827_7461943_7462061_7462141_7462262_7462732_7462853_7462969_7463033_7463776_7463972_7465396_7465576_7465672_7465740_7465867_7465975_7466859_7466993_7470398_7470577_7471482
transcript_99052.known	chrX	+	3467	3	FSM	ENSMUSG00000039545.17	ENSMUST00000144719.9	3467	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	0.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGACCATTTGTGCTCT	NA	False	NA	NA	False	ATTAAA	-28	NA	7439838	7447266	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_7440149_7443926_7443964_7444146
transcript_99054.known	chrX	+	661	3	FSM	ENSMUSG00000039545.17	ENSMUST00000149124.2	661	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCTTTGCAAACGGGAGT	NA	False	NA	NA	False	NA	NA	NA	7440730	7444654	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_7440847_7443926_7443964_7444146
transcript_99055.known	chrX	+	2591	7	FSM	ENSMUSG00000031144.16	ENSMUST00000069520.11	2591	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	0.816496580927726	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCGGCTCTTTTTCTCAG	NA	False	NA	NA	False	AATAAA	-19	NA	7504709	7519495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_7504968_7506096_7506163_7507335_7507461_7510339_7510539_7511246_7511439_7514795_7515127_7518075
transcript_99057.nnic	chrX	+	248	2	NNC	ENSMUSG00000031144.16	novel	2591	7	NA	NA	5188	-1264	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTCTGAGCCCTACCTTC	NA	False	NA	NA	False	NA	NA	NA	7515335	7518231	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_7515428_7518075
transcript_99060.known	chrX	+	2301	9	FSM	ENSMUSG00000031145.16	ENSMUST00000033485.14	2301	9	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_3	5.54526825320471	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATTGTTTATTTAGCC	NA	False	NA	97	True	AAAAAG	-31	NA	7523498	7534197	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_7523740_7524859_7524946_7525774_7525959_7529703_7529818_7530091_7530230_7531168_7531373_7531465_7531653_7532510_7532811_7533350
transcript_99073.known	chrX	-	1157	5	FSM	ENSMUSG00000031146.7	ENSMUST00000033486.6	1157	5	0	0	0	0	multi-exon	FALSE	canonical	3	2052	junction_4	105.587641322268	17020	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATAAGTTAACTTTTTTT	NA	False	NA	NA	False	AATAAA	-28	NA	7537629	7534179	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_7534746_7535165_7535257_7535653_7535750_7535841_7535998_7537381
transcript_99074.known	chrX	+	2376	8	FSM	ENSMUSG00000031145.16	ENSMUST00000129662.3	2376	8	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_2	5.91435472699556	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGGATGTAGCTCAGTGG	NA	False	NA	NA	False	AATAAA	-10	NA	7524771	7534425	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_7524946_7525774_7525959_7529703_7529818_7530091_7530230_7531168_7531373_7531465_7531653_7532510_7532811_7533350
transcript_99075.known	chrX	-	1212	4	FSM	ENSMUSG00000031146.7	ENSMUST00000136155.2	1212	4	0	0	0	0	multi-exon	FALSE	canonical	3	2052	junction_3	118.4229707447	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATGTTTAAGTCTATAAT	NA	False	NA	NA	False	AATAAA	-9	NA	7537611	7534198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_7534746_7535165_7535257_7535653_7535998_7537381
transcript_99077.known	chrX	+	3579	11	FSM	ENSMUSG00000031148.15	ENSMUST00000049896.13	3579	11	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_9	32.218007387174	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTCGCATTTGTGTTATC	NA	False	NA	NA	False	NA	NA	NA	7563369	7576501	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_7563635_7564731_7564893_7564994_7565120_7568301_7568412_7569608_7569823_7571538_7571672_7572249_7572389_7572566_7572691_7572930_7573001_7574174_7574261_7574349
transcript_99096.known	chrX	+	1568	11	FSM	ENSMUSG00000039382.13	ENSMUST00000115689.10	1568	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	58.911883351324	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAAGGGTGGGGCGTGCTT	4038	False	NA	17	True	AATAAA	-30	NA	7588487	7594440	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_7588618_7590091_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
transcript_99099.nnic	chrX	+	1535	11	NNC	ENSMUSG00000039382.13	novel	1609	11	NA	NA	-5	6	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_10	63.2250741399328	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGACTTGACCTCAAGG	4001	False	NA	4	True	AATAAA	-17	NA	7588450	7594427	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_7588618_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7594049
transcript_99100.known	chrX	+	1510	11	FSM	ENSMUSG00000039382.13	ENSMUST00000115688.8	1510	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_8	67.1240642392875	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCATTTATGACTTGACC	4039	False	NA	-2	True	AATAAA	-11	NA	7588488	7594421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_7588618_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593450_7593511_7593585_7593732_7593988
transcript_99134.known	chrX	+	1339	3	FSM	ENSMUSG00000031149.8	ENSMUST00000033489.8	1339	3	0	0	0	0	multi-exon	FALSE	canonical	3	755	junction_2	75.5	1003	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGCCTCCTGTGTGAAG	1170	False	NA	7	True	AATAAA	-20	NA	7594677	7597303	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_7595002_7595954_7596173_7596506
transcript_99136.known	chrX	+	1299	11	FSM	ENSMUSG00000039382.13	ENSMUST00000115687.8	1299	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	65.9799969687784	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGAGCACTTTTTGTGACTG	4716	False	NA	11	True	AATAAA	-13	NA	7589165	7594242	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_7589221_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
transcript_99137.known	chrX	+	1335	9	FSM	ENSMUSG00000039382.13	ENSMUST00000207675.2	1335	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	76.1216132251544	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCATTTATGACTTGACC	4055	False	NA	-2	True	AATAAA	-11	NA	7588504	7594421	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_7588618_7590087_7590160_7590262_7590338_7590425_7590531_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
transcript_99138.known	chrX	-	372	2	FSM	ENSMUSG00000031150.14	ENSMUST00000154977.2	372	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTACTGTGTTAGCACTCAA	NA	False	NA	NA	False	NA	NA	NA	7617144	7604698	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_7604763_7616836
transcript_99140.nic	chrX	+	2948	10	NIC	ENSMUSG00000000134.18	novel	6328	7	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	90.0647229551485	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGAGTCTCCCGTTCTT	NA	False	NA	22	True	AATAAA	-33	NA	7628792	7641438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_7628870_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
transcript_99141.known	chrX	+	3239	10	FSM	ENSMUSG00000000134.18	ENSMUST00000115679.8	3239	10	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	88.3978101510788	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGAGTCTCCCGTTCTTGT	NA	False	NA	24	True	AATAAA	-35	NA	7628914	7641440	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_7629300_7631745_7631860_7632812_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
transcript_99143.known	chrX	+	2943	10	FSM	ENSMUSG00000000134.18	ENSMUST00000115677.8	2943	10	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	93.7669820010234	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGAGTCTCCCGTTCTTGT	NA	False	NA	24	True	AATAAA	-35	NA	7630197	7641440	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_7630268_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
transcript_99148.known	chrX	+	3163	9	FSM	ENSMUSG00000000134.18	ENSMUST00000079542.13	3163	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	94.1407689314252	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGAGTCTCCCGTTCTT	NA	False	NA	22	True	AATAAA	-33	NA	7628902	7641438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_7629300_7631745_7631860_7632793_7633095_7633677_7633924_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
transcript_99152.known	chrX	+	408	3	FSM	ENSMUSG00000000134.18	ENSMUST00000144900.2	408	3	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	132.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCTGGTGGCCACACACT	NA	False	NA	NA	False	NA	NA	NA	7630181	7633031	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_7630238_7631745_7631860_7632793
transcript_99153.known	chrX	+	3156	25	FSM	ENSMUSG00000031153.17	ENSMUST00000065932.14	3156	25	0	0	0	0	multi-exon	FALSE	canonical	2	42	junction_24	10.7256669049321	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGTCTCATTCTTTTC	3030	False	NA	11	True	NA	NA	NA	7656003	7686806	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_7656308_7658308_7658376_7658514_7658577_7660498_7660526_7661230_7661339_7665528_7665668_7666395_7666581_7666774_7666823_7667415_7667448_7667542_7667591_7667728_7667829_7669561_7669640_7670598_7670734_7676131_7676228_7676491_7676705_7676846_7676961_7678520_7678599_7678703_7678800_7678920_7678978_7679070_7679171_7680806_7680938_7684265_7684389_7684534_7684629_7685405_7685561_7686240
transcript_99160.nic	chrX	+	1532	13	ISM	ENSMUSG00000031153.17	ENSMUST00000132456.8	2972	24	-73	15083	-49	-5942	5prime_fragment	FALSE	canonical	3	50	junction_7	11.2654215288298	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTTTGAGATGAAGTAGA	3210	False	NA	NA	False	TATAAA	-20	NA	7656183	7671112	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_+_7656308_7658308_7658376_7658514_7658577_7660498_7660526_7661230_7661339_7665528_7665668_7666395_7666581_7666774_7666823_7667415_7667448_7667542_7667591_7667728_7667829_7669561_7669640_7670598
transcript_99171.known	chrX	+	2471	9	FSM	ENSMUSG00000031154.16	ENSMUST00000115666.8	2471	9	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_8	127.394073645519	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCAACAAATCAAAAAGAATA	NA	False	NA	NA	False	ATTAAA	-21	NA	7708094	7741099	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_7708950_7722542_7722637_7733753_7733819_7733905_7734063_7734161_7734311_7738234_7738439_7739792_7739995_7740078_7740193_7740468
transcript_99175.known	chrX	+	2045	6	FSM	ENSMUSG00000031155.18	ENSMUST00000033495.15	2045	6	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_5	7.30479294709987	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGATTGCCATTTATAGAA	NA	False	NA	5	True	AATAAA	-15	NA	7744540	7749671	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_7744796_7744922_7745033_7745866_7745918_7747486_7747860_7748311_7748489_7748592
transcript_99176.nic	chrX	+	1008	4	ISM	ENSMUSG00000031155.18	ENSMUST00000033495.15	2045	6	-44	1637	-4	393	5prime_fragment	FALSE	canonical	3	74	junction_3	6.34209919681348	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTGGGCTCTTATTTTA	NA	False	NA	NA	False	AATAAA	-23	NA	7744496	7748034	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_+_7744796_7744922_7745033_7745866_7745918_7747486
transcript_99177.nic	chrX	+	839	2	ISM	ENSMUSG00000031155.18	ENSMUST00000126715.2	1100	3	-4	1099	-4	-1099	5prime_fragment	FALSE	canonical	3	85	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAAACAAAACAAAACAA	NA	False	NA	NA	False	NA	NA	NA	7744496	7745462	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_+_7744796_7744922
transcript_99179.known	chrX	+	1527	5	FSM	ENSMUSG00000031156.19	ENSMUST00000115663.10	1527	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	39.7586468582622	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGGTTGGAAAGCCTGGA	NA	False	NA	NA	False	AATAAA	-20	NA	7750482	7760703	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_7750673_7751987_7752171_7755850_7756003_7758378_7759107_7760429
transcript_99180.known	chrX	+	830	5	FSM	ENSMUSG00000031156.19	ENSMUST00000153620.3	830	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	47.1672555911408	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTTGGGTTGGAAAGCC	NA	False	NA	NA	False	AATAAA	-16	NA	7750585	7760699	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_7750673_7751987_7752171_7755850_7756003_7758968_7759107_7760429
transcript_99181.known	chrX	+	3094	4	FSM	ENSMUSG00000031156.19	ENSMUST00000115660.12	3094	4	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	9.0921211313239	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAGGAAGCACTCAAGCC	NA	False	NA	NA	False	NA	NA	NA	7750266	7760731	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_7750673_7751987_7752171_7755850_7756003_7758378
transcript_99182.known	chrX	+	663	4	FSM	ENSMUSG00000031156.19	ENSMUST00000123277.8	663	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	44.2894519672072	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTGGGTTGGAAAGCCTG	NA	False	NA	NA	False	AATAAA	-18	NA	7750616	7760701	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_7750673_7751987_7752171_7755850_7756003_7760429
transcript_99185.nic	chrX	+	914	2	ISM	ENSMUSG00000031156.19	ENSMUST00000208640.2	486	4	-293	5956	1	17	5prime_fragment	FALSE	canonical	3	84	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACTTTTGTAATATGGA	NA	False	NA	NA	False	NA	NA	NA	7750278	7752507	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_+_7750673_7751987
transcript_99186.known	chrX	+	1991	5	FSM	ENSMUSG00000031156.19	ENSMUST00000155967.3	1991	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	41.4578098794425	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGGTTGGAAAGCCTGGA	NA	False	NA	NA	False	AATAAA	-20	NA	7750566	7760703	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_7750673_7751987_7752171_7755850_7756003_7758378_7759655_7760429
transcript_99190.known	chrX	-	763	7	FSM	ENSMUSG00000031157.11	ENSMUST00000156741.8	763	7	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_6	182.287014226345	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCAGCAGCGCCCTTAC	565	False	NA	NA	False	NA	NA	NA	7765239	7761032	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765204
transcript_99193.known	chrX	-	1104	7	FSM	ENSMUSG00000031157.11	ENSMUST00000033497.9	1104	7	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_6	154.654902569847	1274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGAGGCTTGAGTGCTTC	296	False	NA	-1	True	AATAAA	-22	NA	7765508	7760757	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765407
transcript_99197.known	chrX	-	1148	7	FSM	ENSMUSG00000031157.11	ENSMUST00000115655.8	1148	7	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_6	78.4950458450864	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGTGTTGTTTGTAAACA	586	False	NA	-65	True	NA	NA	NA	7765218	7760821	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765009
transcript_99204.known	chrX	+	2381	6	FSM	ENSMUSG00000031158.12	ENSMUST00000033498.10	2381	6	0	0	0	0	multi-exon	FALSE	canonical	3	843	junction_3	44.2511016812011	4222	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTTGCTTGCTGTTTGTC	1189	False	NA	2	True	NA	NA	NA	7765595	7774590	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_7765709_7767199_7767300_7769911_7769976_7772309_7772439_7772519_7772631_7772726
transcript_99205.nnic	chrX	-	1223	3	NNC	ENSMUSG00000031160.5	novel	1077	2	NA	NA	-13	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGTTTTTCTTTTCTTC	NA	False	NA	NA	False	AATAAA	-35	NA	7794859	7790510	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_7791453_7793757_7793887_7794707
transcript_99206.known	chrX	-	1077	2	FSM	ENSMUSG00000031160.5	ENSMUST00000033500.5	1077	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATCTTTGTTTTTCTTTT	NA	False	NA	NA	False	AATAAA	-31	NA	7794846	7790514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_7791453_7794707
transcript_99207.known	chrX	-	4142	29	FSM	ENSMUSG00000031161.16	ENSMUST00000033501.15	4142	29	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_28	71.4613049995933	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAAGTGCTTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-23	NA	7814128	7796360	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_7796777_7797022_7797152_7797247_7797395_7797518_7797621_7797704_7798199_7798301_7798477_7800410_7800561_7802308_7802502_7802620_7802690_7803180_7803315_7803542_7803712_7803865_7803995_7804081_7804251_7804464_7804533_7804624_7804732_7805681_7805772_7805844_7805905_7805998_7806065_7806156_7806284_7808082_7808152_7808271_7808377_7809625_7809724_7809879_7809977_7810812_7810854_7810952_7811038_7812901_7812991_7813141_7813271_7813363_7813484_7813813
transcript_99208.known	chrX	-	4069	29	FSM	ENSMUSG00000031161.16	ENSMUST00000115642.8	4069	29	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_28	46.7627942767691	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGTGCTTTTTTTTTTTA	NA	False	NA	NA	False	AATAAA	-25	NA	7814128	7796358	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_7796777_7797022_7797152_7797247_7797395_7797518_7797621_7797704_7798199_7798301_7798477_7800410_7800561_7802308_7802502_7802620_7802690_7803180_7803315_7803542_7803712_7803865_7803995_7804081_7804251_7804464_7804533_7804624_7804732_7805681_7805772_7805844_7805905_7805998_7806065_7806156_7806284_7808082_7808152_7808271_7808377_7809625_7809724_7809879_7809977_7810812_7810854_7810952_7811038_7812901_7812991_7813141_7813271_7813363_7813484_7813888
transcript_9921.known	chr10	-	4287	13	FSM	ENSMUSG00000025409.15	ENSMUST00000119078.8	4287	13	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_4	21.7579806558932	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGACTCTGTACTCATT	NA	False	NA	-6	True	NA	NA	NA	127124887	127117824	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_127118777_127118893_127118958_127119260_127119314_127119394_127119809_127119911_127120082_127120203_127120355_127120566_127121226_127121400_127122442_127122662_127122826_127122936_127123040_127123264_127123408_127123495_127123560_127124577
transcript_99212.nnic	chrX	-	1017	3	Genic_Genomic	ENSMUSG00000031162.15	novel	676	5	NA	NA	904	7178	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGGCCCTCCTCCTCAAT	NA	False	NA	NA	False	NA	NA	NA	7843406	7818320	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chrX_-_7818511_7820013_7820112_7842677
transcript_99213.known	chrX	-	1902	6	FSM	ENSMUSG00000031162.15	ENSMUST00000033502.14	1902	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	0.489897948556636	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCGGTGTCTATGGTTCTT	NA	False	NA	NA	False	AATAAA	-23	NA	7834149	7825498	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_7826368_7826821_7826948_7828162_7828309_7828409_7828788_7829241_7829481_7834005
transcript_99216.nnic	chrX	-	1045	4	NNC	ENSMUSG00000031163.3	novel	673	4	NA	NA	2591	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	19.4821855949366	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTCACTCTTGGCAGAG	NA	False	NA	-9	True	AATAAA	-21	NA	7882140	7870438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_7870742_7871941_7872098_7881456_7881548_7881645
transcript_99217.nnic	chrX	-	1607	4	NNC	ENSMUSG00000031163.3	novel	673	4	NA	NA	2010	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_3	9.28559218478941	113	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTCACTCTTGGCAGAG	NA	False	NA	-9	True	AATAAA	-21	NA	7882721	7870438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_7870742_7871941_7872098_7881456_7881595_7881711
transcript_99219.known	chrX	-	673	4	FSM	ENSMUSG00000031163.3	ENSMUST00000033503.3	673	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	18.5472369909914	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTCACTCTTGGCAGAG	NA	False	NA	-9	True	AATAAA	-21	NA	7884731	7870438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_7870742_7871941_7872098_7881456_7881595_7884655
transcript_99220.nnic	chrX	-	637	3	NNC	ENSMUSG00000031163.3	novel	673	4	NA	NA	9552	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	23	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTCACTCTTGGCAGAG	NA	False	NA	-9	True	AATAAA	-21	NA	7875179	7870438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_7870742_7871941_7872098_7875001
transcript_99221.nnic	chrX	-	887	3	NNC	ENSMUSG00000031163.3	novel	673	4	NA	NA	2658	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	22.5	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTCACTCTTGGCAGAG	NA	False	NA	-9	True	AATAAA	-21	NA	7882073	7870438	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_7870742_7871941_7872098_7881645
transcript_99224.known	chrX	-	386	1	FSM	ENSMUSG00000080877.2	ENSMUST00000118652.2	386	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1083	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACATCGGTCTGCAATGT	NA	False	NA	NA	False	NA	NA	NA	7905235	7904849	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_7904800_7905200
transcript_99225.known	chrX	-	3116	6	FSM	ENSMUSG00000039231.19	ENSMUST00000115638.10	3116	6	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_5	11.3947356265953	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTCAAGCTGGGCCCTT	9880	False	NA	NA	False	NA	NA	NA	7940999	7927409	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_7929223_7929934_7930065_7930149_7930297_7936826_7937490_7938561_7938708_7940782
transcript_9923.known	chr10	+	286	2	FSM	ENSMUSG00000092593.2	ENSMUST00000172591.2	286	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAATACGTTT	NA	False	NA	NA	False	NA	NA	NA	127124382	127125550	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_127124447_127125328
transcript_99231.known	chrX	-	2807	5	FSM	ENSMUSG00000039231.19	ENSMUST00000150095.8	2807	5	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_4	11.6054943884352	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTGGGAGATTGAGGTC	6992	False	NA	NA	False	NA	NA	NA	7940860	7927664	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_7929223_7929934_7930297_7936826_7937490_7938561_7938708_7940782
transcript_99234.known	chrX	+	1449	4	FSM	ENSMUSG00000087193.8	ENSMUST00000126286.8	1449	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	38.6091526281874	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGGGCCACTGGATTTT	7727	False	NA	29	True	TATAAA	-19	NA	7915486	7939198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_7915823_7926454_7926526_7936874_7937304_7938585
transcript_99235.known	chrX	+	801	4	FSM	ENSMUSG00000087193.8	ENSMUST00000153013.8	801	4	0	0	0	0	multi-exon	TRUE	canonical	3	17	junction_3	26.8824602048746	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGGCGTGGCCGGGGACGC	7807	False	NA	NA	False	NA	NA	NA	7915566	7940858	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_7915823_7926454_7926526_7936874_7937304_7940813
transcript_99238.known	chrX	+	1177	4	FSM	ENSMUSG00000087193.8	ENSMUST00000188632.2	1177	4	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	23.6971634495683	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCCTGGGCCACTGGAT	NA	False	NA	26	True	TATAAA	-16	NA	7917829	7939195	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_7917897_7926454_7926526_7936874_7937304_7938585
transcript_99244.known	chrX	-	2707	4	FSM	ENSMUSG00000039231.19	ENSMUST00000115636.4	2707	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	47.4013595679374	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACCAATCCAAAACATTA	9911	False	NA	NA	False	AATAAA	-16	NA	7940968	7933647	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_7935360_7936826_7937490_7938561_7938708_7940782
transcript_99246.nnic	chrX	+	1684	3	NIC	ENSMUSG00000087193.8	novel	1449	4	NA	NA	-230	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	48	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGGGCCACTGGATTTT	7421	False	NA	29	True	TATAAA	-19	NA	7915180	7939198	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_+_7915823_7936874_7937304_7938585
transcript_99251.nic	chrX	+	977	3	ISM	ENSMUSG00000087193.8	ENSMUST00000188632.2	1177	4	-297	1779	-297	-1064	5prime_fragment	FALSE	canonical	3	56	junction_1	9.5	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCTGCCGTGGCTCCCAG	9773	False	NA	3	True	NA	NA	NA	7917532	7937416	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_+_7917897_7926454_7926526_7936874
transcript_99255.known	chrX	-	2778	6	FSM	ENSMUSG00000039231.19	ENSMUST00000115637.8	2778	6	0	0	0	0	multi-exon	TRUE	canonical	3	73	junction_5	15.551205741035	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGCTTGAGATTTGGGAG	7355	False	NA	NA	False	NA	NA	NA	7940497	7927673	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_7929223_7929934_7930065_7930149_7930297_7936826_7937490_7938561_7938708_7940354
transcript_99256.known	chrX	-	1166	3	FSM	ENSMUSG00000039231.19	ENSMUST00000127617.2	1166	3	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_2	20	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTGACCTCTGGTTTCA	7300	False	NA	NA	False	NA	NA	NA	7940552	7936667	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_7937490_7938561_7938708_7940354
transcript_99257.known	chrX	-	2114	12	FSM	ENSMUSG00000031165.7	ENSMUST00000033505.7	2114	12	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_8	4.36552989219744	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTCAGCCACGTCGCCTG	7441	False	NA	NA	False	NA	NA	NA	7956737	7947691	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_7948229_7951744_7951860_7952080_7952536_7952802_7952957_7953168_7953212_7953999_7954175_7954962_7955017_7955112_7955155_7955274_7955378_7955494_7955582_7956082_7956224_7956529
transcript_99259.known	chrX	-	4183	9	FSM	ENSMUSG00000031166.14	ENSMUST00000033506.13	4183	9	0	0	0	0	multi-exon	TRUE	canonical	3	18	junction_8	7.92839044194974	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGCCTCTCTTCATTTG	6921	False	NA	1	True	AATAAA	-21	NA	7999047	7989539	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_7991969_7992319_7992439_7994049_7994192_7994272_7994454_7995207_7995516_7996241_7996373_7996494_7996605_7997623_7997865_7998525
transcript_99260.nic	chrX	-	1051	4	ISM	ENSMUSG00000031166.14	ENSMUST00000153839.2	774	6	275	577	-59	0	internal_fragment	FALSE	canonical	3	18	junction_3	9.2736184954957	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCTTTAGCAAATGCAAAAG	7159	False	NA	NA	False	NA	NA	NA	7998809	7995956	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_7996373_7996494_7996605_7997623_7997865_7998525
transcript_99265.known	chrX	+	839	3	FSM	ENSMUSG00000055188.13	ENSMUST00000124018.8	839	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCATGAAATATCTTTATT	NA	False	NA	NA	False	AATACA	-14	NA	8011667	8014203	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_8011971_8012730_8012858_8013794
transcript_99268.known	chrX	-	1183	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115615.9	1183	7	0	0	0	0	multi-exon	FALSE	canonical	3	391	junction_1	305.254766092558	5252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTGATAATGCTTTTTC	6535	False	NA	-9	True	ATTAAA	-23	NA	8011962	8008599	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_8009195_8009485_8009569_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
transcript_99269.known	chrX	-	1152	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115617.10	1152	7	0	0	0	0	multi-exon	FALSE	canonical	3	391	junction_1	339.486213105759	4790	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAATCAATACTGATAATG	6562	False	NA	-16	True	ATTAAA	-16	NA	8011935	8008606	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_8009195_8009485_8009572_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
transcript_9927.known	chr10	+	600	3	FSM	ENSMUSG00000025408.16	ENSMUST00000139091.2	600	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	357	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGGTCAGCCTGCACCAA	NA	False	NA	NA	False	NA	NA	NA	127126661	127131934	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_127126761_127131189_127131348_127131591
transcript_99270.known	chrX	-	1319	8	FSM	ENSMUSG00000031167.17	ENSMUST00000129947.9	1319	8	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_4	511.677353696364	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTGTGAATGTCATTTT	6562	False	NA	NA	False	ATTAAA	-38	NA	8011935	8008710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_8009195_8009485_8009572_8009896_8009991_8010086_8010187_8010413_8010685_8010811_8010919_8011193_8011312_8011876
transcript_99271.known	chrX	-	2792	7	FSM	ENSMUSG00000031167.17	ENSMUST00000040010.10	2792	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	443.550604653955	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCATGTGTGTTACACGTA	6561	False	NA	-3	True	ATTAAA	-16	NA	8011936	8005216	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_8007448_8009489_8009572_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
transcript_99272.known	chrX	-	2648	6	FSM	ENSMUSG00000039201.11	ENSMUST00000239441.2	2648	6	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_4	11.0018180315801	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTATTTCTCTATTTC	NA	False	NA	-7	True	NA	NA	NA	8042420	8020710	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_8022306_8022554_8022744_8022889_8023018_8038976_8039132_8040439_8040550_8041949
transcript_99273.nnic	chrX	-	2340	5	NNC	ENSMUSG00000039201.11	novel	2184	5	NA	NA	8188	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	65.4064217030713	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCACTGTGGTATGTGTAT	5070	False	NA	-18	True	NA	NA	NA	8033942	8020721	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_8022306_8022554_8022744_8022889_8023018_8033429_8033628_8033701
transcript_99274.known	chrX	-	2184	5	FSM	ENSMUSG00000039201.11	ENSMUST00000143984.2	2184	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_3	59.3738157776641	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACAAAGGTCACTGTGGT	NA	False	NA	-26	True	NA	NA	NA	8042130	8020729	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_8022306_8022554_8022744_8022889_8023018_8040439_8040550_8041949
transcript_99275.known	chrX	-	2560	5	FSM	ENSMUSG00000039201.11	ENSMUST00000133093.2	2560	5	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_3	12.051970793194	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCACTGTGGTATGTGTAT	NA	False	NA	-18	True	NA	NA	NA	8042197	8020721	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_8022306_8022554_8023018_8038976_8039132_8040439_8040550_8041949
transcript_99276.nnic	chrX	-	2309	4	NNC	ENSMUSG00000039201.11	novel	2184	5	NA	NA	8293	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_3	57.1858568373529	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCACTGTGGTATGTGTAT	5175	False	NA	-18	True	NA	NA	NA	8033837	8020721	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_8022306_8022554_8022744_8022889_8023018_8033429
transcript_9928.known	chr10	+	890	4	FSM	ENSMUSG00000025408.16	ENSMUST00000026475.15	890	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	321.555593949165	10398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTCACTTTTTCTTCTT	NA	False	NA	29	True	AGTAAA	-18	NA	127126642	127132157	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_127126761_127129580_127129629_127131189_127131348_127131591
transcript_99280.known	chrX	-	1883	14	FSM	ENSMUSG00000031169.14	ENSMUST00000082320.12	1883	14	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	23.6039812106789	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCGGTTTTTTGGTTTTT	1964	False	NA	0	True	AATAAA	-19	NA	8072764	8060086	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_8060517_8064213_8064325_8065305_8065392_8065469_8065534_8065624_8065702_8067414_8067516_8067682_8067809_8069264_8069283_8069397_8069529_8069607_8069790_8070030_8070075_8070434_8070628_8071803_8071973_8072613
transcript_99281.known	chrX	-	1839	13	FSM	ENSMUSG00000031169.14	ENSMUST00000089402.10	1839	13	0	0	0	0	multi-exon	TRUE	canonical	3	57	junction_2	6.61857655055493	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGCTCGGTTTTTTGGTTT	1988	False	NA	-2	True	AATAAA	-17	NA	8072740	8060088	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_8060517_8064213_8064325_8065305_8065392_8065469_8065534_8065624_8065702_8067414_8067516_8067682_8067809_8069397_8069529_8069607_8069790_8070030_8070075_8070434_8070628_8071803_8071973_8072613
transcript_99289.known	chrX	-	1529	13	FSM	ENSMUSG00000031171.12	ENSMUST00000115594.8	1529	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	84.1872912024137	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATGCACGTTGCTTACTT	NA	False	NA	-14	True	AATAAA	-21	NA	8118549	8106658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_8107070_8111298_8111341_8111522_8111670_8111790_8111889_8112574_8112659_8112770_8112874_8112965_8113020_8113107_8113161_8115217_8115297_8116634_8116726_8116807_8116878_8117118_8117277_8118410
transcript_9929.known	chr10	-	2939	21	FSM	ENSMUSG00000040354.15	ENSMUST00000037290.12	2939	21	0	0	0	0	multi-exon	FALSE	canonical	3	1393	junction_15	206.401332360041	689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCTCCTGGTCTACCCT	NA	False	NA	-6	True	AATAAA	-27	NA	127147655	127132089	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_127132310_127132409_127132503_127132741_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144776_127144853_127145872_127146008_127146088_127146168_127146312_127146404_127147389
transcript_99291.known	chrX	-	1656	13	FSM	ENSMUSG00000031171.12	ENSMUST00000115595.8	1656	13	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_4	23.6231995198694	620	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATGCACGTTGCTTACTT	NA	False	NA	-14	True	AATAAA	-21	NA	8118634	8106658	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_8107070_8111298_8111341_8111522_8111712_8111790_8111889_8112574_8112659_8112770_8112874_8112965_8113020_8113107_8113161_8115217_8115297_8116634_8116726_8116807_8116878_8117118_8117277_8118410
transcript_99297.known	chrX	-	1047	5	FSM	ENSMUSG00000031171.12	ENSMUST00000147467.2	1047	5	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_2	13.7386316640341	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTGTGAAGTCAATGTTT	NA	False	NA	NA	False	AATAAA	-16	NA	8118602	8114760	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_8115297_8116634_8116726_8116807_8116878_8117118_8117277_8118410
transcript_99299.known	chrX	+	1868	16	FSM	ENSMUSG00000031170.15	ENSMUST00000033512.11	1868	16	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	2.63818119165458	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGTCTGAGCCGTGTGTT	5413	False	NA	NA	False	AATAAA	-17	NA	8137619	8146418	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_8137745_8138125_8138183_8138269_8138349_8138890_8139007_8139113_8139188_8139825_8139919_8140036_8140116_8142358_8142442_8142817_8142877_8142978_8143108_8143259_8143340_8143931_8144033_8144267_8144384_8145096_8145242_8145331_8145436_8145990
transcript_993.known	chr1	+	1581	9	FSM	ENSMUSG00000025925.15	ENSMUST00000027057.8	1581	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	336.315978656977	2251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGCCACCTAGCATTGA	NA	False	NA	51	True	TATAAA	-11	NA	15875887	15913694	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_15876182_15877864_15877961_15883264_15883387_15889157_15889308_15889874_15889988_15901730_15901791_15903624_15903714_15908405_15908513_15913144
transcript_9930.known	chr10	-	3065	20	FSM	ENSMUSG00000040354.15	ENSMUST00000145275.8	3065	20	0	0	0	0	multi-exon	FALSE	canonical	3	1393	junction_14	176.876657025606	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGAGCCCTCTCCTGGTCT	NA	False	NA	-11	True	AATAAA	-22	NA	127147547	127132094	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_127132310_127132409_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144776_127144853_127145872_127146008_127146088_127146168_127146312_127146404_127147389
transcript_99303.known	chrX	-	842	1	FSM	ENSMUSG00000078208.2	ENSMUST00000105006.2	842	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	600	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATCAAGTTGATGTTTAAA	NA	False	NA	NA	False	AATAAA	-31	NA	8829214	8828372	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_8828400_8829200
transcript_99306.known	chrX	-	850	1	FSM	ENSMUSG00000060685.5	ENSMUST00000075792.5	850	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8103	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATGTTTAAATTCTTAAC	NA	False	NA	NA	False	AATAAA	-39	NA	8842798	8841948	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_8841900_8842800
transcript_99307.known	chrX	-	856	1	FSM	ENSMUSG00000078206.2	ENSMUST00000105004.2	856	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4037	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATCAAGTTGATGTTTAAA	NA	False	NA	NA	False	AATAAA	-31	NA	8852994	8852138	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_8852100_8853000
transcript_99308.known	chrX	+	841	1	FSM	ENSMUSG00000071815.7	ENSMUST00000096509.7	841	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	882	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATCAAGTTGATGTTTAAA	6682	False	NA	31	True	AATAAA	-31	NA	8899731	8900572	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_8899700_8900600
transcript_9931.known	chr10	+	2217	16	FSM	ENSMUSG00000040345.11	ENSMUST00000219511.2	2217	16	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	20.2809160433042	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAGTCTCACTTGAGCTC	7089	False	NA	NA	False	NA	NA	NA	127157832	127165657	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_127158301_127158562_127158760_127160987_127161069_127161391_127161500_127161712_127161772_127161916_127162011_127162200_127162297_127162421_127162521_127162741_127162884_127162963_127163075_127163506_127163606_127163767_127163846_127163962_127164017_127164258_127164394_127164746_127164853_127165367
transcript_99313.nnic	chrX	+	903	2	Genic_Genomic	ENSMUSG00000072249.4	novel	847	1	NA	NA	-19502	-5	multi-exon	TRUE	canonical	3	217	junction_1	0	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAGTATCAAATTGATGC	NA	False	NA	25	True	AATAAA	-25	NA	8909751	8930095	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chrX_+_8909865_8929305
transcript_99315.known	chrX	+	847	1	FSM	ENSMUSG00000072249.4	ENSMUST00000097029.4	847	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2533	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATCAAATTGATGCTTAAA	NA	False	NA	30	True	AATAAA	-30	NA	8929253	8930100	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_8929300_8930100
transcript_99316.known	chrX	+	5076	3	FSM	ENSMUSG00000015342.7	ENSMUST00000015486.7	5076	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	9.5	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGCATTTTATTTCTTGT	NA	False	NA	9	True	AATAAA	-19	NA	9138994	9179489	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_9139474_9148235_9148499_9175155
transcript_99318.known	chrX	-	2176	5	FSM	ENSMUSG00000031176.9	ENSMUST00000033519.3	2176	5	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_4	27.1523479647709	588	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGGCTCTGGTTGATCC	NA	False	NA	-1	True	AATAAA	-21	NA	9529242	9520505	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_9522303_9522618_9522697_9523279_9523404_9527218_9527261_9529107
transcript_9932.known	chr10	+	1782	15	FSM	ENSMUSG00000040345.11	ENSMUST00000069548.7	1782	15	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	20.6447107422859	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAACATACATAGACTAAATA	8881	False	NA	10	True	ATTAAA	-16	NA	127159624	127165812	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_127159700_127160987_127161069_127161391_127161500_127161712_127161772_127161916_127162011_127162200_127162297_127162421_127162521_127162741_127162884_127162963_127163075_127163506_127163606_127163767_127163846_127163962_127164017_127164258_127164394_127164746_127164853_127165367
transcript_99322.known	chrX	-	2795	17	FSM	ENSMUSG00000031174.18	ENSMUST00000115534.8	2795	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	30.7301129797793	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTGCTTGGAAGTATTT	NA	False	NA	0	True	AATAAA	-32	NA	10082692	10024454	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_10025120_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082454
transcript_99323.known	chrX	-	2926	17	FSM	ENSMUSG00000031174.18	ENSMUST00000073392.11	2926	17	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	17.609368067878	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTGCTTGGAAGTATTT	NA	False	NA	0	True	AATAAA	-32	NA	10083159	10024454	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_10025120_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
transcript_99324.nnic	chrX	-	2715	17	NNC	ENSMUSG00000031174.18	novel	2926	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	28.8693176226942	41	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTGCTTGGAAGTATTT	NA	False	NA	0	True	AATAAA	-32	NA	10082972	10024454	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_10025120_10028840_10028930_10030984_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
transcript_99326.known	chrX	-	2739	17	FSM	ENSMUSG00000031174.18	ENSMUST00000115533.8	2739	17	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	23.3939595569027	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACAGTTATTGTACTTTG	NA	False	NA	NA	False	AATGAA	-20	NA	10083159	10024610	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_10025089_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
transcript_99339.nnic	chrX	-	2154	13	NIC	ENSMUSG00000031174.18	novel	2926	17	NA	NA	-20	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_6	32.0350285711681	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTGCTTGGAAGTATTT	NA	False	NA	0	True	AATAAA	-32	NA	10083017	10024454	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_10025120_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
transcript_99345.nic	chrX	-	1646	10	ISM	ENSMUSG00000031174.18	ENSMUST00000155734.8	2672	12	-20	14799	-20	11234	5prime_fragment	FALSE	canonical	3	91	junction_1	9.6148034012373	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATAGCCTTTGTTTATAGA	NA	False	NA	NA	False	ATTAAA	-20	NA	10083017	10062005	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
transcript_99348.known	chrX	-	2445	6	FSM	ENSMUSG00000031174.18	ENSMUST00000124744.2	2445	6	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_2	7.41350119714026	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGGAAAGAAAGTAGTGTT	NA	False	NA	NA	False	NA	NA	NA	10082972	10073239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
transcript_9935.nic	chr10	+	1736	12	NIC	ENSMUSG00000040345.11	novel	1782	15	NA	NA	1303	0	intron_retention	FALSE	canonical	3	51	junction_1	7.05117070169648	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAACATACATAGACTAAATA	NA	False	NA	10	True	ATTAAA	-16	NA	127161494	127165812	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chr10_+_127161772_127161916_127162011_127162200_127162297_127162421_127162521_127162741_127162884_127162963_127163075_127163506_127163606_127163767_127163846_127163962_127164017_127164258_127164394_127164746_127164853_127165367
transcript_99350.known	chrX	+	1733	8	FSM	ENSMUSG00000058254.13	ENSMUST00000076354.13	1733	8	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_5	9.20736173961258	210	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTGTGGTTTTCTTCTTT	NA	False	NA	NA	False	AATAAA	-21	NA	10351396	10462844	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_10351478_10445553_10445743_10448403_10448479_10450280_10450377_10451735_10451892_10456374_10456459_10461517_10461594_10461868
transcript_99352.known	chrX	+	447	2	FSM	ENSMUSG00000008035.13	ENSMUST00000144356.8	447	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGAGGTAGGCGGCAGTG	NA	False	NA	NA	False	NA	NA	NA	10581257	10584623	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_10581307_10584225
transcript_99353.known	chrX	+	431	2	FSM	ENSMUSG00000008035.13	ENSMUST00000156321.2	431	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGAGGTAGGCGGCAGTG	1557	False	NA	NA	False	NA	NA	NA	10583706	10584623	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_10583740_10584225
transcript_99354.known	chrX	+	2022	2	FSM	ENSMUSG00000008035.13	ENSMUST00000115524.8	2022	2	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	0	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAACTGGACAAGTGTG	1479	False	NA	NA	False	AATAAA	-15	NA	10583628	10585929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_10583944_10584222
transcript_99355.known	chrX	+	2019	2	FSM	ENSMUSG00000008035.13	ENSMUST00000008179.7	2019	2	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_1	0	937	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAACTGGACAAGTGTG	1479	False	NA	NA	False	AATAAA	-15	NA	10583628	10585929	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_10583944_10584225
transcript_99356.nic	chrX	-	2330	7	ISM	ENSMUSG00000040363.16	ENSMUST00000115513.9	6941	15	32785	0	32785	0	3prime_fragment	FALSE	canonical	3	150	junction_3	14.7129950119689	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGAAGTACTTTGCATC	NA	False	NA	-6	True	AATAAA	-19	NA	11914007	11902978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_11904157_11905150_11905308_11905488_11905567_11906623_11906770_11907740_11907908_11913094_11913353_11913661
transcript_99357.nic	chrX	-	1780	7	ISM	ENSMUSG00000040363.16	ENSMUST00000115513.9	6941	15	32785	550	32785	-547	3prime_fragment	FALSE	canonical	3	150	junction_3	14.7129950119689	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGTGCTTGGCGTAATT	NA	False	NA	-7	True	NA	NA	NA	11914007	11903528	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_11904157_11905150_11905308_11905488_11905567_11906623_11906770_11907740_11907908_11913094_11913353_11913661
transcript_99358.known	chrX	-	345	1	FSM	ENSMUSG00000081461.4	ENSMUST00000119630.2	345	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTCCTTTTGAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	12323469	12323124	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_12323100_12323500
transcript_9936.nnic	chr10	+	1489	11	NNC	ENSMUSG00000040345.11	novel	1782	15	NA	NA	1795	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	20.5951450589696	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAACATACATAGACTAAATA	NA	False	NA	10	True	ATTAAA	-16	NA	127161986	127165812	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_127162111_127162200_127162297_127162421_127162521_127162741_127162884_127162963_127163075_127163506_127163606_127163767_127163846_127163962_127164017_127164258_127164394_127164746_127164853_127165367
transcript_99361.known	chrX	+	2324	9	FSM	ENSMUSG00000031007.3	ENSMUST00000033313.3	2324	9	0	0	0	0	multi-exon	FALSE	canonical	3	980	junction_3	62.8369666279333	3246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATGGTTACAGTTTTAT	NA	False	NA	84	True	AATAAA	-19	NA	12454039	12483288	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_12454175_12460999_12461131_12462394_12462527_12471105_12471202_12471356_12471495_12472519_12472574_12473169_12473320_12475073_12475194_12481920
transcript_99364.known	chrX	+	692	3	FSM	ENSMUSG00000031007.3	ENSMUST00000137277.2	692	3	0	0	0	0	multi-exon	FALSE	canonical	3	1012	junction_1	37.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTCTCTAAAACACAATTT	NA	False	NA	NA	False	AAAAAG	-34	NA	12454039	12462820	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_12454175_12460999_12461131_12462394
transcript_9937.known	chr10	-	5319	2	FSM	ENSMUSG00000047492.6	ENSMUST00000059718.6	5319	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGGCTGTGTGTTCTTT	5446	False	NA	NA	False	NA	NA	NA	127190280	127184725	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_127186881_127187116
transcript_99370.known	chrX	-	2699	7	FSM	ENSMUSG00000044148.7	ENSMUST00000060108.7	2699	7	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_4	24.9377001523575	305	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTACAGTTTTTAATTTC	NA	False	NA	-3	True	AATAAA	-25	NA	12539907	12521117	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_12522726_12524100_12524264_12528888_12529069_12530738_12530889_12535765_12535886_12539264_12539400_12539564
transcript_99374.known	chrX	+	1749	2	FSM	ENSMUSG00000087424.2	ENSMUST00000127521.2	1749	2	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATAGGGCTCGGGTATGGC	NA	False	NA	NA	False	AATAAA	-18	NA	12908253	12911449	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_12908349_12909795
transcript_99376.known	chrX	+	11887	45	FSM	ENSMUSG00000031010.18	ENSMUST00000089302.11	11887	45	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	219.011541405002	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGTTTTTCTTTCATTT	823	False	NA	NA	False	AATAAA	-16	NA	12937752	13039567	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_12937973_12960162_12960417_12964688_12964835_12966671_12966752_12969566_12969680_12970821_12971041_12973303_12973420_12973902_12974155_12974228_12974368_12976314_12976468_12977330_12977436_12979798_12980006_12980746_12980884_12982862_12982997_12987671_12987760_12989406_12989750_12990806_12990903_12991634_12991847_12994446_12994688_12995215_12995366_12996464_12996586_12997965_12998097_12998308_12998588_13001182_13001309_13002683_13002810_13003846_13004014_13006347_13006457_13006648_13006796_13007945_13008093_13010524_13010748_13011365_13011587_13014183_13014375_13017508_13017683_13020330_13020473_13022232_13022987_13023907_13024032_13024957_13025184_13026012_13026143_13026985_13027172_13027552_13027774_13027861_13027951_13030950_13031108_13031510_13031724_13032870_13032967_13035585
transcript_99379.known	chrX	+	2772	17	FSM	ENSMUSG00000031010.18	ENSMUST00000169594.9	2772	17	0	0	0	0	multi-exon	TRUE	canonical	3	336	junction_14	127.465421168841	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAAGAGCCTACATGA	807	False	NA	NA	False	NA	NA	NA	12937736	12989688	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_12937973_12938453_12938565_12960162_12960417_12964688_12964835_12966671_12966752_12969566_12969680_12970821_12971041_12973303_12973420_12973902_12974155_12974228_12974368_12976314_12976468_12977330_12977436_12979798_12980006_12980746_12980884_12982862_12982997_12987671_12987760_12989406
transcript_99399.nnic	chrX	+	1202	2	Genic_Genomic	ENSMUSG00000084349.4	novel	1210	1	NA	NA	-28	70	multi-exon	FALSE	canonical	0	0	junction_1	0	1022	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-25	NA	13068781	13070089	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chrX_+_13068895_13069000
transcript_994.known	chr1	+	968	7	FSM	ENSMUSG00000025925.15	ENSMUST00000186565.7	968	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	378.383146500416	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACAAAAAAATATGACA	NA	False	NA	NA	False	NA	NA	NA	15875880	15892239	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr1_+_15876182_15877864_15877961_15883264_15883387_15886109_15886197_15889157_15889308_15889874_15889988_15892140
transcript_99403.nnic	chrX	+	1264	2	Genic_Genomic	ENSMUSG00000084349.4	novel	1210	1	NA	NA	-28	75	multi-exon	FALSE	canonical	0	0	junction_1	0	1981	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGACACTT	NA	False	NA	NA	False	AATAAA	-30	NA	13068781	13070094	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chrX_+_13069491_13069539
transcript_99410.nnic	chrX	+	1237	2	Genic_Genomic	ENSMUSG00000084349.4	novel	1210	1	NA	NA	-28	75	multi-exon	TRUE	canonical	0	0	junction_1	0	1880	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGACACTT	NA	False	NA	NA	False	AATAAA	-30	NA	13068781	13070094	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chrX_+_13069673_13069748
transcript_99411.nnic	chrX	+	1255	2	Genic_Genomic	ENSMUSG00000084349.4	novel	1210	1	NA	NA	-28	70	multi-exon	FALSE	canonical	0	0	junction_1	0	1718	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-25	NA	13068781	13070089	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chrX_+_13069781_13069833
transcript_99412.nnic	chrX	+	1256	2	Genic_Genomic	ENSMUSG00000084349.4	novel	1210	1	NA	NA	-28	69	multi-exon	FALSE	canonical	0	0	junction_1	0	1624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	AATAAA	-24	NA	13068781	13070088	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chrX_+_13069822_13069872
transcript_99423.nnic	chrX	+	1235	2	Genic_Genomic	ENSMUSG00000084349.4	novel	1210	1	NA	NA	-25	71	multi-exon	FALSE	canonical	0	0	junction_1	0	1964	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAC	NA	False	NA	NA	False	AATAAA	-26	NA	13068784	13070090	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chrX_+_13069438_13069508
transcript_99427.nnic	chrX	+	1246	2	Genic_Genomic	ENSMUSG00000084349.4	novel	1210	1	NA	NA	-25	70	multi-exon	FALSE	canonical	0	0	junction_1	0	1957	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-25	NA	13068784	13070089	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chrX_+_13069491_13069549
transcript_99435.nnic	chrX	+	1212	2	Genic_Genomic	ENSMUSG00000084349.4	novel	1210	1	NA	NA	-25	72	multi-exon	FALSE	canonical	0	0	junction_1	0	1639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGACA	NA	False	NA	NA	False	AATAAA	-27	NA	13068784	13070091	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	Genic_Genomic_chrX_+_13069763_13069857
transcript_99441.known	chrX	+	1210	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10941	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTCCAGGACCACTTTGT	NA	False	NA	NA	False	AAGAAA	-28	NA	13068809	13070019	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_13068800_13070000
transcript_99445.known	chrX	+	4692	17	FSM	ENSMUSG00000000787.13	ENSMUST00000000804.7	4692	17	0	0	0	0	multi-exon	TRUE	canonical	3	179	junction_1	98.1322449554681	394	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCGTTTGATTGTCCAT	NA	False	NA	18	True	AATAAA	-18	NA	13147208	13160291	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_13147397_13150416_13150475_13151153_13151202_13152272_13152406_13153463_13153623_13153702_13153803_13154023_13154160_13154517_13154604_13154811_13154911_13155018_13155180_13155633_13155779_13156075_13156221_13156417_13156600_13156684_13156803_13157139_13157294_13157401_13157542_13157651
transcript_99451.known	chrX	-	8366	26	FSM	ENSMUSG00000031012.18	ENSMUST00000115438.10	8366	26	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_8	22.9097708412808	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCACGTGTCTCCTCAGATT	NA	False	NA	NA	False	AATAAA	-19	NA	13712817	13383318	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_13388587_13392236_13392321_13399578_13399782_13403824_13403906_13403999_13404081_13410752_13410869_13415403_13415601_13417185_13417222_13418611_13418681_13421116_13421186_13423230_13423317_13425558_13425638_13427753_13427943_13434714_13434796_13437272_13437351_13453082_13453205_13466595_13466696_13474972_13475057_13480708_13480832_13486888_13487065_13492433_13492537_13543823_13543897_13549209_13549288_13580904_13581011_13652175_13652289_13712246
transcript_99452.known	chrX	-	4057	25	FSM	ENSMUSG00000031012.18	ENSMUST00000033321.11	4057	25	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_7	23.235172990294	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTAGTGAAATGTGTTT	NA	False	NA	-23	True	TATAAA	-36	NA	13712795	13387569	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_13388587_13392236_13392321_13399578_13399782_13403824_13403906_13403999_13404081_13410752_13410869_13415403_13415601_13418611_13418681_13421116_13421186_13423230_13423317_13425558_13425638_13427753_13427943_13434714_13434796_13437272_13437351_13453082_13453205_13466595_13466696_13474972_13475057_13480708_13480832_13486888_13487065_13492433_13492537_13543823_13543897_13549209_13549288_13580904_13581011_13652175_13652289_13712246
transcript_99456.known	chrX	+	4167	15	FSM	ENSMUSG00000025037.7	ENSMUST00000026013.6	4167	15	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_7	23.3440330181188	703	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATAGGCTTCTCTGATTTG	NA	False	NA	21	True	AATAAA	-22	NA	16485936	16554057	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_16486153_16500420_16500516_16505302_16505441_16524806_16524912_16525683_16525776_16528555_16528698_16530889_16531040_16531890_16532051_16539085_16539183_16543793_16543848_16547052_16547111_16548439_16548538_16550202_16550315_16551220_16551284_16551470
transcript_99461.known	chrX	-	2411	15	FSM	ENSMUSG00000040147.15	ENSMUST00000040820.13	2411	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.479157423749955	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTTGCTGTCTCTTCTTT	NA	False	NA	NA	False	AATAAA	-14	NA	16683605	16575520	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_16576431_16577486_16577550_16578804_16578917_16582624_16582723_16584494_16584553_16589174_16589229_16590898_16590996_16598257_16598418_16600312_16600463_16602210_16602353_16605332_16605425_16606309_16606415_16634616_16634755_16637163_16637259_16683468
transcript_99465.nnic	chrX	-	2140	13	NNC	ENSMUSG00000025038.8	novel	2554	15	NA	NA	68052	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_12	30.7679486912382	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGACCATTTTATTGTA	NA	False	NA	-9	True	ATTAAA	-17	NA	17117555	16998287	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_16998612_17014510_17014617_17027489_17027583_17028929_17029128_17067284_17067416_17070991_17071189_17073918_17074062_17081896_17082063_17089326_17089466_17090177_17090292_17092576_17092829_17096739_17096964_17117502
transcript_99474.known	chrX	-	1983	5	FSM	ENSMUSG00000025040.14	ENSMUST00000026016.13	1983	5	0	0	0	0	multi-exon	TRUE	canonical	3	209	junction_3	21.435951110226	587	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATTGTGCTTATATATCC	NA	False	NA	-9	True	AATAAA	-21	NA	17438564	17422802	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_17424251_17424919_17425049_17434271_17434348_17437541_17437699_17438391
transcript_99486.known	chrX	-	1032	4	FSM	ENSMUSG00000025040.14	ENSMUST00000177213.8	1032	4	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_3	16.9901932498329	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTATGGCTGATTTTTT	NA	False	NA	-22	True	ATTAAA	-18	NA	17437880	17423762	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_17424251_17424919_17425049_17434271_17434348_17437541
transcript_99487.known	chrX	+	216	1	FSM	ENSMUSG00000084186.2	ENSMUST00000117431.2	216	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGAACCCTCCCCCAATA	NA	False	NA	NA	False	NA	NA	NA	19737062	19737278	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_19737100_19737300
transcript_99488.known	chrX	+	2206	2	FSM	ENSMUSG00000037347.8	ENSMUST00000044138.8	2206	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTATCTAGTGGTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	19925798	19963760	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_19927448_19963203
transcript_9949.known	chr10	+	377	3	FSM	ENSMUSG00000040280.11	ENSMUST00000218492.2	377	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	50.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTGGGGGAGGGGACTCGA	NA	False	NA	NA	False	AAAAAG	-25	NA	127350835	127352555	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_127350908_127352133_127352195_127352311
transcript_99490.known	chrX	-	2512	17	FSM	ENSMUSG00000037341.15	ENSMUST00000072451.11	2512	17	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_11	2.05775970414429	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCCCACTTTTTCACATAG	NA	False	NA	NA	False	ATTAAA	-16	NA	20158046	19971993	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_19972454_19974913_19975020_19986758_19986842_19998009_19998074_20005151_20005212_20025053_20025208_20025870_20025983_20028166_20028281_20028382_20028472_20028672_20028779_20031168_20031311_20032246_20032353_20052298_20052412_20055082_20055160_20068948_20069027_20071604_20071805_20157598
transcript_99491.nnic	chrX	-	705	2	NNC	ENSMUSG00000037341.15	novel	2512	17	NA	NA	-20	-59300	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCATTGTAGTATATGTC	NA	False	NA	NA	False	AATAAA	-19	NA	20158066	20090054	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_20090292_20157598
transcript_99492.known	chrX	+	4498	6	FSM	ENSMUSG00000060090.17	ENSMUST00000115387.8	4498	6	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_1	195.012820091398	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTTGATGTCTATACTT	NA	False	NA	3	True	AATAAA	-18	NA	20230797	20267092	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_20231068_20231278_20231438_20243119_20243786_20247943_20248059_20263459_20263546_20263890
transcript_99496.known	chrX	+	4866	13	FSM	ENSMUSG00000037315.16	ENSMUST00000115384.9	4866	13	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	19.6800801714717	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTCAGTGTGATGATT	NA	False	NA	9	True	ATTAAA	-17	NA	20291926	20386178	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_20292070_20295261_20295371_20301449_20301538_20326754_20326812_20328350_20328431_20345752_20345911_20355940_20356132_20360395_20360608_20365664_20365833_20368634_20368752_20377258_20377730_20378974_20379093_20383224
transcript_9950.known	chr10	-	2289	12	FSM	ENSMUSG00000025403.6	ENSMUST00000026470.6	2289	12	0	0	0	0	multi-exon	FALSE	canonical	3	1501	junction_11	177.272820512796	1883	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGTATTTTGCCCACGG	NA	False	NA	-21	True	NA	NA	NA	127358313	127353007	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
transcript_99501.nnic	chrX	+	1696	7	NNC	ENSMUSG00000023070.7	novel	1607	7	NA	NA	-1585	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.74535599249993	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTCCATTGTTTACTTT	NA	False	NA	NA	False	AATAAA	-20	NA	20414440	20428328	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_20414617_20416601_20416781_20418558_20418742_20423750_20423967_20425593_20425726_20426215_20426371_20427673
transcript_99502.known	chrX	+	3564	24	FSM	ENSMUSG00000031060.17	ENSMUST00000115374.8	3564	24	0	0	0	0	multi-exon	TRUE	canonical	3	108	junction_4	93.2983708932913	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCTCATGTCCTAGTAT	394	False	NA	41	True	AATAAA	-29	NA	20483860	20517140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_20484291_20486212_20486354_20501969_20502154_20503664_20503896_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511837_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
transcript_99507.known	chrX	+	3172	23	FSM	ENSMUSG00000031060.17	ENSMUST00000084383.10	3172	23	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_9	72.7799809002085	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCTCATGTCCTAGTAT	555	False	NA	41	True	AATAAA	-29	NA	20484021	20517140	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_20484291_20486212_20486354_20501969_20502154_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511837_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
transcript_9951.known	chr10	+	934	4	FSM	ENSMUSG00000040280.11	ENSMUST00000035735.11	934	4	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	3.29983164553722	497	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTGCGCCTGCTAATCA	NA	False	NA	NA	False	AATACA	-21	NA	127350835	127353023	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_127350908_127351267_127351357_127352133_127352195_127352311
transcript_9952.known	chr10	-	1675	2	FSM	ENSMUSG00000040258.7	ENSMUST00000095266.3	1675	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTCGCCTGTGTTAAGA	127	False	NA	NA	False	AATAAA	-10	NA	127370428	127361341	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_127362833_127370244
transcript_99522.known	chrX	-	908	3	FSM	ENSMUSG00000031059.10	ENSMUST00000116621.2	908	3	0	0	0	0	multi-exon	FALSE	canonical	3	2198	junction_1	70	19757	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGTTACTGCTGCTTT	NA	False	NA	-4	True	ATTAAA	-14	NA	20483858	20481564	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_20481782_20481952_20482084_20483298
transcript_99523.known	chrX	+	2160	17	FSM	ENSMUSG00000031060.17	ENSMUST00000141128.2	2160	17	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_9	66.2334885084577	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCAAAAACAGCTTCCAGC	557	False	NA	NA	False	AAAAAG	-5	NA	20484023	20515435	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_20484291_20486212_20486354_20501969_20502154_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511834_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382
transcript_99525.known	chrX	+	4044	26	FSM	ENSMUSG00000001924.16	ENSMUST00000089217.11	4044	26	0	0	0	0	multi-exon	TRUE	canonical	3	1167	junction_1	494.469940036804	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGCTAAGTTCGCATGTT	NA	False	NA	NA	False	NA	NA	NA	20524564	20549418	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
transcript_99528.known	chrX	+	4071	26	FSM	ENSMUSG00000001924.16	ENSMUST00000001989.9	4071	26	0	0	0	0	multi-exon	FALSE	canonical	3	2172	junction_1	357.223416925598	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGCTAAGTTCGCATGTT	NA	False	NA	NA	False	NA	NA	NA	20529136	20549418	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
transcript_9953.known	chr10	-	3436	15	FSM	ENSMUSG00000040249.16	ENSMUST00000125480.2	3436	15	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_10	3.95961758615291	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127457017	127423495	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_127424064_127424277_127424480_127425423_127425647_127426425_127426607_127427770_127428008_127429221_127429366_127429648_127429839_127430817_127431041_127431153_127431317_127441277_127441542_127441654_127441784_127443814_127443935_127446211_127446350_127448525_127448649_127456486
transcript_9954.known	chr10	+	3775	22	FSM	ENSMUSG00000002147.19	ENSMUST00000092074.12	3775	22	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	71.0521510108266	1207	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAATCTACTGTACACA	2271	False	NA	-6	True	AATAAA	-22	NA	127478854	127496826	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_127479119_127482759_127482897_127483553_127483693_127483974_127484059_127486564_127486704_127486821_127486875_127487025_127487175_127487818_127487951_127488059_127488249_127488853_127488942_127489075_127489199_127490794_127490888_127491165_127491373_127492792_127492888_127492976_127493114_127493424_127493572_127494065_127494130_127494225_127494331_127494497_127494570_127495301_127495368_127495457_127495587_127495663
transcript_99562.nnic	chrX	+	785	5	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	0	-475	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1664.0379352647	196	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	46	True	AATAAA	-15	NA	20529136	20548943	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_20529200_20547561_20547754_20548141_20548244_20548347_20548449_20548616
transcript_99571.known	chrX	+	3467	21	FSM	ENSMUSG00000031066.11	ENSMUST00000033383.3	3467	21	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_13	34.5694590643244	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTAGCTGTTTTGAGTGTT	NA	False	NA	3	True	NA	NA	NA	20570144	20586778	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_20570359_20577987_20578098_20578268_20578400_20578564_20578683_20579075_20579222_20579353_20579416_20579535_20579636_20579986_20580161_20580252_20580412_20580745_20580971_20581091_20581176_20581266_20581362_20582985_20583193_20583993_20584044_20584232_20584512_20584592_20584664_20584917_20585031_20585303_20585454_20585537_20585654_20585831_20585921_20586004
transcript_99588.known	chrX	+	2358	16	FSM	ENSMUSG00000001127.13	ENSMUST00000001155.11	2358	16	0	0	0	0	multi-exon	TRUE	non_canonical	1	66	junction_12	87.7031356337959	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTGCTTGTTTATTTTG	6273	False	NA	23	True	NA	NA	NA	20714781	20726758	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20719556_20719699_20719798_20719827_20719915_20720056_20720151_20720355_20723850_20724028_20724116_20724164_20724632_20724752_20724980_20725113_20725923_20726059_20726217
transcript_9959.known	chr10	+	6002	9	FSM	ENSMUSG00000040195.12	ENSMUST00000048099.5	6002	9	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_7	22.4499443206436	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTAGTCTTTTTAAATTAA	NA	False	NA	16	True	AATAAA	-16	NA	127512934	127536918	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_127513097_127524101_127524218_127525093_127525314_127526729_127526803_127528836_127528931_127529352_127529468_127530297_127530524_127531237_127531412_127532096
transcript_99596.known	chrX	+	2581	10	FSM	ENSMUSG00000001127.13	ENSMUST00000152955.8	2581	10	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_6	87.3856218927361	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6294	False	NA	NA	False	NA	NA	NA	20714802	20721749	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20719556_20719699_20719798_20719827_20719915_20720056_20720151
transcript_99616.known	chrX	+	1520	6	FSM	ENSMUSG00000001127.13	ENSMUST00000120356.8	1520	6	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	64.9935381403413	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCTTTCTCCAACTATCT	6308	False	NA	NA	False	AATAAA	-12	NA	20714816	20719128	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168
transcript_99620.known	chrX	+	883	6	FSM	ENSMUSG00000001131.12	ENSMUST00000115342.10	883	6	0	0	0	0	multi-exon	FALSE	canonical	3	578	junction_1	90.9382207875215	2327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATATTTCTGTATAGTGT	NA	False	NA	16	True	AATAAA	-17	NA	20736404	20740972	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_20736564_20737272_20737402_20739015_20739096_20739288_20739416_20739606_20739732_20740709
transcript_99625.known	chrX	+	833	6	FSM	ENSMUSG00000001131.12	ENSMUST00000009530.5	833	6	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_1	211.264384125673	1464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTTCTGTATAGTGTTT	NA	False	NA	18	True	AATAAA	-19	NA	20736459	20740974	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_20736564_20737269_20737402_20739015_20739096_20739288_20739416_20739606_20739732_20740709
transcript_99645.known	chrX	+	2854	5	FSM	ENSMUSG00000001127.13	ENSMUST00000122312.8	2854	5	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_3	33.6600653594137	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTTGTCCTTCATTGTT	6296	False	NA	NA	False	AATAAA	-27	NA	20714804	20719143	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168
transcript_99648.known	chrX	-	1636	9	FSM	ENSMUSG00000001128.8	ENSMUST00000001156.8	1636	9	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	23.4837044564949	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATAATATTGTGAAATAT	NA	False	NA	73	True	AATAGA	-13	NA	20797794	20791692	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_20791999_20793519_20793632_20793773_20793963_20794191_20794366_20794566_20794759_20794881_20795053_20795834_20796011_20797390_20797542_20797629
transcript_99650.nnic	chrX	-	1427	8	NIC	ENSMUSG00000001128.8	novel	1636	9	NA	NA	-43	-78	combination_of_known_splicesites	FALSE	canonical	1	6	junction_3	38.4819066946681	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTTCTAAGATTCTGTAA	NA	False	NA	-5	True	AATAAA	-15	NA	20797837	20791770	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_20791999_20793519_20793632_20793773_20793963_20794566_20794759_20794881_20795053_20795834_20796011_20797390_20797542_20797629
transcript_9967.known	chr10	+	1522	7	FSM	ENSMUSG00000040195.12	ENSMUST00000118612.8	1522	7	0	0	0	0	multi-exon	TRUE	canonical	3	127	junction_4	19.2411595862157	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTGAGTTTGACTACTCT	NA	False	NA	NA	False	AATAAA	-23	NA	127512932	127531037	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_127513097_127524101_127524218_127525093_127525314_127526729_127526803_127528836_127528931_127529352_127529468_127530297
transcript_99699.known	chrX	-	636	7	FSM	ENSMUSG00000001134.10	ENSMUST00000001162.10	636	7	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_5	225.323039705713	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGAATCACATAGTCCTTT	NA	False	NA	-14	True	ATTAAA	-14	NA	20828239	20818167	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_20818263_20818446_20818511_20825596_20825705_20825973_20826042_20826176_20826259_20827873_20828026_20828172
transcript_9970.known	chr10	-	2582	7	FSM	ENSMUSG00000025402.13	ENSMUST00000026469.9	2582	7	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	9.00771274458111	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCATGGCCCCCTTCCCCTC	NA	False	NA	-1	True	AATAAA	-21	NA	127502579	127496786	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_127497649_127498599_127498792_127499000_127499134_127499218_127499271_127499608_127499743_127500133_127501008_127502244
transcript_99700.known	chrX	-	875	7	FSM	ENSMUSG00000001134.10	ENSMUST00000123836.2	875	7	0	0	0	0	multi-exon	FALSE	canonical	3	501	junction_1	60.2699943771544	3059	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGAGATTCAATTGGTAGC	NA	False	NA	NA	False	CATAAA	-22	NA	20828256	20817900	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_20818263_20818446_20818511_20825596_20825705_20825973_20826042_20826176_20826259_20827918_20828026_20828172
transcript_99751.known	chrX	-	3548	6	FSM	ENSMUSG00000009406.14	ENSMUST00000009550.14	3548	6	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	13.1666244725062	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAAGAGGGAAATG	NA	False	NA	NA	False	NA	NA	NA	20816847	20799633	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_20801788_20801869_20801972_20802470_20802903_20803355_20803803_20807792_20808037_20816678
transcript_99755.nnic	chrX	-	518	6	NIC	ENSMUSG00000001134.10	novel	875	7	NA	NA	-12	0	combination_of_known_splicesites	FALSE	canonical	3	44	junction_2	227.721760049408	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATAGTCCTTTTTTCCC	NA	False	NA	-8	True	ATTAAA	-20	NA	20828268	20818161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_20818263_20818446_20818511_20825973_20826042_20826176_20826259_20827918_20828026_20828172
transcript_9977.known	chr10	-	2311	6	FSM	ENSMUSG00000025402.13	ENSMUST00000099157.4	2311	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	16.4851448279959	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCATGGCCCCCTTCCCCT	NA	False	NA	-2	True	AATAAA	-20	NA	127502501	127496787	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_127497649_127499000_127499134_127499218_127499271_127499608_127499743_127500133_127501008_127502244
transcript_99781.known	chrX	-	714	5	FSM	ENSMUSG00000001134.10	ENSMUST00000142341.2	714	5	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_3	51.773545368267	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTACCCTTTTCCCTGT	NA	False	NA	NA	False	AATAAA	-20	NA	20828225	20825300	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_20825705_20825973_20826042_20826176_20826259_20827918_20828026_20828172
transcript_99788.known	chrX	+	1412	4	FSM	ENSMUSG00000086877.8	ENSMUST00000136447.2	1412	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	56.8057117628931	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCATGAATGCTATTTCA	NA	False	NA	NA	False	ATTAAA	-31	NA	20828352	20852976	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_20828897_20833967_20834048_20851664_20851705_20852228
transcript_99796.known	chrX	-	659	6	FSM	ENSMUSG00000001134.10	ENSMUST00000150719.8	659	6	0	0	0	0	multi-exon	FALSE	canonical	3	501	junction_1	55.8619727542807	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATAGTCCTTTTTTCCC	NA	False	NA	-8	True	ATTAAA	-20	NA	20828154	20818161	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_20818263_20818446_20818511_20825596_20825705_20825973_20826042_20826176_20826259_20827918
transcript_99797.known	chrX	-	411	2	FSM	ENSMUSG00000001134.10	ENSMUST00000147205.2	411	2	0	0	0	0	multi-exon	FALSE	canonical	3	668	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTTATTCATCTGTGAAA	NA	False	NA	NA	False	NA	NA	NA	20828213	20827655	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_20828026_20828172
transcript_99798.known	chrX	-	3160	5	FSM	ENSMUSG00000054737.12	ENSMUST00000115334.8	3160	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	3.67423461417477	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATATTGTATTCCTTTAA	3236	False	NA	-5	True	TTTAAA	-1	NA	20928291	20895181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_20897892_20902575_20902711_20902866_20903012_20926741_20926797_20928176
transcript_99801.known	chrX	-	739	5	FSM	ENSMUSG00000054737.12	ENSMUST00000133186.2	739	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	19.3261480900877	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGCAAGTTAGACTCCCTA	2972	False	NA	NA	False	GATAAA	-18	NA	20928555	20897827	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_20897892_20902575_20902711_20902866_20903012_20926741_20926763_20928181
transcript_99807.nic	chrX	-	620	2	ISM	ENSMUSG00000054737.12	ENSMUST00000115334.8	3160	5	-4	31114	-4	-2379	5prime_fragment	FALSE	canonical	3	41	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTTAATTCTTTAGTTAA	3232	False	NA	NA	False	ATTAAA	-4	NA	20928295	20926295	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_20926797_20928176
transcript_99811.nic	chrX	-	3327	9	NIC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3318	0	combination_of_known_junctions	FALSE	canonical	3	201	junction_6	366.28779668452	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	-22	True	AATAAA	-15	NA	23227974	23085523	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23160453_23160520_23181368_23181441_23227732
transcript_99813.known	chrX	-	3251	9	FSM	ENSMUSG00000036782.14	ENSMUST00000115313.8	3251	9	0	0	0	0	multi-exon	TRUE	canonical	3	241	junction_8	283.721694623446	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCGTTACTCCTCAGTTT	NA	False	NA	-8	True	AATAAA	-29	NA	23231321	23085509	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732_23227824_23231194
transcript_99814.nnic	chrX	-	3338	8	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-3752	0	at_least_one_novel_splicesite	FALSE	canonical	3	222	junction_7	307.654590309938	126	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	-22	True	AATAAA	-15	NA	23185170	23085523	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23184851
transcript_99815.nic	chrX	-	3261	8	ISM	ENSMUSG00000036782.14	ENSMUST00000115313.8	3251	9	3347	14	3318	0	3prime_fragment	FALSE	canonical	3	772	junction_6	153.107671864193	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	-22	True	AATAAA	-15	NA	23227974	23085523	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732
transcript_99820.nnic	chrX	-	467	3	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-85	-112883	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	120.5	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGGGAACACATTCTCCA	NA	False	NA	NA	False	NA	NA	NA	23231406	23227346	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_23227511_23227732_23227824_23231194
transcript_99822.known	chrX	+	4002	21	FSM	ENSMUSG00000036769.15	ENSMUST00000101670.3	4002	21	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	11.664475984801	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGATTTACAATCTCTACA	NA	False	NA	NA	False	AATAAA	-24	NA	23559334	23672264	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_23559509_23559663_23559779_23598556_23598591_23616144_23616220_23622678_23623325_23624333_23624465_23625421_23625518_23627642_23627780_23628515_23628600_23636128_23636236_23644862_23645015_23647041_23647181_23649526_23649592_23654290_23654405_23662222_23662346_23666608_23666801_23666972_23667075_23667278_23667395_23668553_23668682_23670007_23670143_23671127
transcript_99823.known	chrX	+	4167	20	FSM	ENSMUSG00000036769.15	ENSMUST00000035766.13	4167	20	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_8	9.86248944541599	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAAATAAATGATTGTC	NA	False	NA	NA	False	ATTAAA	-12	NA	23559289	23672229	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_23559779_23598556_23598591_23616144_23616220_23622678_23623325_23624333_23624465_23625421_23625518_23627642_23627780_23628515_23628600_23636128_23636236_23644862_23645015_23647041_23647181_23649526_23649592_23654290_23654405_23662222_23662346_23666608_23666801_23666972_23667075_23667278_23667395_23668553_23668682_23670007_23670143_23671127
transcript_99828.nnic	chrX	-	631	6	NNC	ENSMUSG00000094775.2	novel	639	8	NA	NA	7924	123	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.2	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTTTGAAAGGCTCTTT	NA	False	NA	NA	False	AATAAA	-32	NA	24816689	24803312	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_24803505_24803823_24803923_24806371_24806454_24814651_24814716_24815024_24815151_24816621
transcript_99829.known	chrX	-	890	9	FSM	ENSMUSG00000096620.3	ENSMUST00000096469.7	890	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAGTTTGAAAGGCTCTT	NA	False	NA	NA	False	AATAAA	-31	NA	25256755	25232782	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_25232974_25233291_25233391_25235836_25235919_25243932_25243997_25244308_25244435_25248856_25248892_25249430_25249498_25255050_25255171_25256649
transcript_9983.known	chr10	+	358	2	FSM	ENSMUSG00000040195.12	ENSMUST00000133505.2	358	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTGTGAGAGTGAAACTAC	1053	False	NA	NA	False	NA	NA	NA	127502769	127504426	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_127502988_127504286
transcript_99830.known	chrX	-	892	9	FSM	ENSMUSG00000082639.9	ENSMUST00000163263.2	892	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTTTGAAAGGCTCTTT	NA	False	NA	NA	False	AATAAA	-31	NA	26186623	26156181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_26156372_26156689_26156789_26159232_26159315_26173787_26173852_26174163_26174290_26178694_26178730_26179268_26179336_26184941_26185062_26186514
transcript_99831.known	chrX	-	1131	9	FSM	ENSMUSG00000082639.9	ENSMUST00000121900.8	1131	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGAGTGGCAAATAGTCC	NA	False	NA	NA	False	AATGAA	-2	NA	26186655	26155977	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_26156372_26156689_26156789_26159232_26159315_26173787_26173852_26174163_26174290_26178694_26178730_26179268_26179336_26184941_26185065_26186514
transcript_99832.nnic	chrX	-	541	4	NNC	ENSMUSG00000082639.9	novel	892	9	NA	NA	26725	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.942809041582063	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTTTGAAAGGCTCTTT	NA	False	NA	NA	False	AATAAA	-31	NA	26159898	26156181	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_26156372_26156689_26156789_26159232_26159315_26159728
transcript_99834.known	chrX	-	924	9	FSM	ENSMUSG00000080725.10	ENSMUST00000119231.8	924	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTTTGAAAGGCTCTTT	NA	False	NA	NA	False	AATAAA	-32	NA	26890997	26868042	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_26868234_26868552_26868652_26871097_26871180_26879377_26879442_26879753_26879880_26883015_26883051_26883589_26883657_26889261_26889385_26890860
transcript_99837.nnic	chrX	-	633	6	NNC	ENSMUSG00000095546.8	novel	867	9	NA	NA	7924	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.2	14	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTTGAAAGGCTCTTTAA	NA	False	NA	NA	False	AATAAA	-34	NA	27370873	27357514	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_27357709_27358027_27358127_27360575_27360658_27368857_27368922_27369230_27369357_27370805
transcript_99839.known	chrX	-	893	9	FSM	ENSMUSG00000095293.8	ENSMUST00000079797.13	893	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.992156741649222	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAGTTTGAAAGGCTCTT	NA	False	NA	NA	False	AATAAA	-31	NA	27727301	27704432	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_27704624_27704942_27705042_27707491_27707574_27715774_27715839_27716147_27716274_27719367_27719403_27719941_27720009_27725616_27725740_27727195
transcript_9984.known	chr10	+	695	2	FSM	ENSMUSG00000040195.12	ENSMUST00000124388.2	695	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCCCGCAGCCAGAGCAGC	1275	False	NA	NA	False	NA	NA	NA	127502991	127504720	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_127503253_127504286
transcript_99842.nnic	chrX	-	764	7	NNC	ENSMUSG00000095293.8	novel	893	9	NA	NA	7920	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.11803398874989	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAGTTTGAAAGGCTCTT	NA	False	NA	NA	False	AATAAA	-31	NA	27717793	27704432	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_27704624_27704942_27705042_27707491_27707574_27715774_27715839_27716147_27716274_27717401_27717531_27717720
transcript_99846.nnic	chrX	-	630	6	NNC	ENSMUSG00000095293.8	novel	893	9	NA	NA	7925	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.2	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAGTTTGAAAGGCTCTT	NA	False	NA	NA	False	AATAAA	-31	NA	27717788	27704432	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_27704624_27704942_27705042_27707491_27707574_27715774_27715839_27716147_27716274_27717720
transcript_99850.known	chrX	-	907	9	FSM	ENSMUSG00000094624.2	ENSMUST00000179874.2	907	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.992156741649222	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTGTCTCCTATGAAACA	NA	False	NA	NA	False	AATAAA	-14	NA	28074048	28051125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_28051300_28051618_28051718_28054166_28054249_28062445_28062510_28062821_28062948_28066071_28066107_28066645_28066713_28072320_28072444_28073911
transcript_99855.nnic	chrX	-	616	6	NNC	ENSMUSG00000094624.2	novel	907	9	NA	NA	9553	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.2	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTGTCTCCTATGAAACA	NA	False	NA	NA	False	AATAAA	-14	NA	28064495	28051125	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_28051300_28051618_28051718_28054166_28054249_28062445_28062510_28062821_28062948_28064424
transcript_99860.nnic	chrX	-	631	6	NNC	ENSMUSG00000096457.8	novel	864	9	NA	NA	7925	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.2	14	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAGTTTGAAAGGCTCTT	NA	False	NA	NA	False	AATAAA	-31	NA	28378762	28365407	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_28365599_28365917_28366017_28368465_28368548_28376745_28376810_28377118_28377245_28378693
transcript_99862.known	chrX	-	907	9	FSM	ENSMUSG00000095887.8	ENSMUST00000180207.8	907	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.992156741649222	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTGTCTCCTATGAAACA	NA	False	NA	NA	False	AATAAA	-14	NA	28735118	28712236	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_28712411_28712729_28712829_28715278_28715361_28723560_28723625_28723933_28724060_28727151_28727187_28727725_28727793_28733400_28733524_28734981
transcript_99866.nnic	chrX	-	613	6	NNC	ENSMUSG00000095887.8	novel	907	9	NA	NA	7923	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.2	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTGTCTCCTATGAAACA	NA	False	NA	NA	False	AATAAA	-14	NA	28725574	28712236	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_28712411_28712729_28712829_28715278_28715361_28723560_28723625_28723933_28724060_28725506
transcript_99869.nnic	chrX	+	612	6	NNC	ENSMUSG00000073257.4	novel	874	9	NA	NA	9510	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3.8262252939418	13	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTTGTCTCCTATGAAA	NA	False	NA	NA	False	AATAAA	-12	NA	29734942	29748281	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_29735012_29736460_29736587_29736895_29736960_29745161_29745244_29747691_29747791_29748109
transcript_99873.nnic	chrX	+	755	7	NNC	ENSMUSG00000073255.11	novel	864	9	NA	NA	7929	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3.74165738677394	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAGTTTGAAAGGCTCTT	NA	False	NA	NA	False	AATAAA	-31	NA	30088384	30101764	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_30088449_30088638_30088768_30089923_30090050_30090361_30090426_30098624_30098707_30101155_30101255_30101573
transcript_99876.nnic	chrX	+	626	6	NNC	ENSMUSG00000073255.11	novel	864	9	NA	NA	7929	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3.8262252939418	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAGTTTGAAAGGCTCTT	NA	False	NA	NA	False	AATAAA	-31	NA	30088384	30101764	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_30088449_30089923_30090050_30090361_30090426_30098624_30098707_30101155_30101255_30101573
transcript_9988.known	chr10	+	678	7	FSM	ENSMUSG00000025400.12	ENSMUST00000026466.5	678	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	19.9220703966452	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACTGATGCAATAGGCTG	NA	False	NA	7	True	AATAAA	-17	NA	127561263	127567637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_127561335_127561879_127562003_127564039_127564146_127564315_127564346_127564982_127565037_127565344_127565419_127567417
transcript_99880.known	chrX	+	864	9	FSM	ENSMUSG00000073255.11	ENSMUST00000101654.10	864	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	3.49106001094224	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAGTTTGAAAGGCTCTT	NA	False	NA	NA	False	AATAAA	-31	NA	30078890	30101764	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_30078968_30080429_30080553_30086161_30086229_30086767_30086803_30089923_30090050_30090361_30090426_30098624_30098707_30101155_30101255_30101573
transcript_99881.known	chrX	-	907	9	FSM	ENSMUSG00000094759.8	ENSMUST00000180344.8	907	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.992156741649222	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTGTCTCCTATGAAACA	NA	False	NA	NA	False	AATAAA	-14	NA	30542588	30519660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_30519835_30520153_30520253_30522701_30522784_30530981_30531046_30531357_30531484_30534607_30534643_30535181_30535249_30540856_30540980_30542451
transcript_99885.nnic	chrX	-	613	6	NNC	ENSMUSG00000094759.8	novel	907	9	NA	NA	7925	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.2	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTGTCTCCTATGAAACA	NA	False	NA	NA	False	AATAAA	-14	NA	30533028	30519660	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_30519835_30520153_30520253_30522701_30522784_30530981_30531046_30531357_30531484_30532960
transcript_99886.known	chrX	+	924	9	FSM	ENSMUSG00000073247.4	ENSMUST00000101647.4	924	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	3.49106001094224	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAGTTTGAAAGGCTCTT	NA	False	NA	NA	False	AATAAA	-31	NA	34331036	34353969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_34331174_34332639_34332763_34338370_34338438_34338976_34339012_34342138_34342265_34342573_34342638_34350827_34350910_34353360_34353460_34353778
transcript_99887.nnic	chrX	+	743	7	NNC	ENSMUSG00000073247.4	novel	924	9	NA	NA	9567	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3.74165738677394	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAGTTTGAAAGGCTCTT	NA	False	NA	NA	False	AATAAA	-31	NA	34340603	34353969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_34340656_34340845_34340975_34342138_34342265_34342573_34342638_34350827_34350910_34353360_34353460_34353778
transcript_99888.nnic	chrX	+	630	6	NNC	ENSMUSG00000073247.4	novel	924	9	NA	NA	9551	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3.8262252939418	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAGTTTGAAAGGCTCTT	NA	False	NA	NA	False	AATAAA	-31	NA	34340587	34353969	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_34340656_34342138_34342265_34342573_34342638_34350827_34350910_34353360_34353460_34353778
transcript_99896.known	chrX	+	928	9	FSM	ENSMUSG00000073245.11	ENSMUST00000101645.10	928	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	3.49106001094224	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAGTTTGAAAGGCTCTT	NA	False	NA	NA	False	AATAAA	-31	NA	34667835	34690746	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_34667977_34669420_34669544_34675151_34675219_34675757_34675793_34678902_34679029_34679340_34679405_34687606_34687689_34690137_34690237_34690555
transcript_99899.nnic	chrX	+	626	6	NNC	ENSMUSG00000073245.11	novel	928	9	NA	NA	7929	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3.8262252939418	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAGTTTGAAAGGCTCTT	NA	False	NA	NA	False	AATAAA	-31	NA	34677375	34690746	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_34677440_34678902_34679029_34679340_34679405_34687606_34687689_34690137_34690237_34690555
transcript_99901.nnic	chrX	+	639	6	NNC	ENSMUSG00000073245.11	novel	928	9	NA	NA	7938	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3.8262252939418	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAGTTTGAAAGGCTCTT	NA	False	NA	NA	False	AATAAA	-31	NA	34677384	34690746	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_+_34677462_34678902_34679029_34679340_34679405_34687606_34687689_34690137_34690237_34690555
transcript_99904.known	chrX	+	6665	53	FSM	ENSMUSG00000031093.15	ENSMUST00000033419.13	6665	53	0	0	0	0	multi-exon	TRUE	canonical	1	53	junction_52	21.5813446724207	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTCGAAGTGAAGGAAATA	NA	False	NA	8	True	AATAAA	-20	NA	35152484	35340215	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_35152686_35208063_35208181_35208264_35208355_35209368_35209452_35210537_35210608_35210959_35211056_35224254_35224390_35226891_35227070_35227434_35227515_35228698_35228783_35232342_35232484_35233689_35233903_35239699_35239823_35241139_35241223_35243959_35244083_35244267_35244345_35246087_35246273_35246359_35246426_35248452_35248546_35251145_35251270_35256685_35256808_35257250_35257338_35258076_35258167_35263740_35263860_35266162_35266233_35266318_35266445_35267653_35267726_35270252_35270400_35271726_35271811_35272991_35273104_35275284_35275464_35277562_35277680_35279866_35279943_35280450_35280561_35283644_35283757_35291952_35292020_35293633_35293682_35295933_35296077_35297955_35298072_35301191_35301330_35304764_35304948_35308518_35308633_35310706_35310923_35311010_35311069_35316133_35316241_35323200_35323324_35324846_35324961_35325933_35326081_35330522_35330734_35331312_35331504_35331982_35332084_35333500_35333640_35339751
transcript_99905.known	chrX	+	3712	11	FSM	ENSMUSG00000017057.10	ENSMUST00000033418.8	3712	11	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	4.27083130081252	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGCTTTTTTTTTTGGTC	NA	False	NA	NA	False	AATAAA	-24	NA	35375762	35434912	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_35375929_35390297_35390438_35394256_35394396_35396616_35396738_35404865_35405051_35407663_35407816_35412302_35412351_35412631_35412765_35415670_35415768_35419195_35419281_35432466
transcript_99906.known	chrX	+	2089	4	FSM	ENSMUSG00000036699.13	ENSMUST00000048067.10	2089	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAATGTCTCTGTGGTAT	NA	False	NA	NA	False	AATAAA	-25	NA	35459598	35462811	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_35459666_35460164_35460221_35460431_35460560_35460973
transcript_99907.known	chrX	+	2197	4	FSM	ENSMUSG00000036699.13	ENSMUST00000115256.2	2197	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTAATGTCTCTGTGGTA	NA	False	NA	NA	False	AATAAA	-24	NA	35459638	35462810	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_35459812_35460161_35460221_35460431_35460560_35460973
transcript_99908.known	chrX	+	2911	11	FSM	ENSMUSG00000016239.12	ENSMUST00000016383.10	2911	11	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_3	7.36478105580879	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTCATACTTCTTTCTG	NA	False	NA	NA	False	TATAAA	-15	NA	35592005	35625994	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_35593053_35596168_35596288_35598864_35598988_35605275_35605520_35606294_35606386_35614654_35614770_35617494_35617617_35619698_35619858_35621138_35621302_35622258_35622409_35625416
transcript_99909.known	chrX	+	1857	3	FSM	ENSMUSG00000006373.11	ENSMUST00000073339.7	1857	3	0	0	0	0	multi-exon	FALSE	canonical	3	454	junction_1	42	2164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTGAGGCTTTCATTTT	1668	False	NA	NA	False	AATAAA	-15	NA	35861858	35869732	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_35862268_35865773_35865930_35868440
transcript_9991.nnic	chr10	+	742	6	NNC	ENSMUSG00000025400.12	novel	514	3	NA	NA	-77	0	at_least_one_novel_splicesite	TRUE	canonical	3	36	junction_5	3.96988664825584	111	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACTGATGCAATAGGCTG	NA	False	NA	7	True	AATAAA	-17	NA	127563638	127567637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_127563897_127564039_127564146_127564315_127564346_127564982_127565037_127565344_127565419_127567417
transcript_99913.known	chrX	-	6003	7	FSM	ENSMUSG00000059708.13	ENSMUST00000051906.13	6003	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	20.573040611441	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGGGAGGATGTCTCTAT	NA	False	NA	NA	False	AATAAA	-16	NA	35909048	35871966	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_35876318_35877907_35877977_35878338_35878574_35882255_35882387_35887220_35887990_35900125_35900228_35908702
transcript_99914.known	chrX	-	1370	6	FSM	ENSMUSG00000059708.13	ENSMUST00000133980.2	1370	6	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_4	11.6687617166519	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAGAAATTAAAAAACCA	NA	False	NA	NA	False	NA	NA	NA	35908749	35875531	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_35876318_35877907_35877977_35878338_35878574_35882255_35882387_35900125_35900228_35908702
transcript_99917.nic	chrX	-	692	4	ISM	ENSMUSG00000059708.13	ENSMUST00000133980.2	1370	6	-376	3006	-77	-3006	5prime_fragment	FALSE	canonical	3	34	junction_2	5.71547606649408	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAAGAAGGCCAGGGACA	NA	False	NA	NA	False	NA	NA	NA	35909125	35878537	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_35878574_35882255_35882387_35900125_35900228_35908702
transcript_99918.nic	chrX	-	1398	4	ISM	ENSMUSG00000059708.13	ENSMUST00000051906.13	6003	7	-77	10316	-77	-6751	5prime_fragment	FALSE	canonical	3	11	junction_1	14.6590889515307	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAGAGAAGAGGAAGTAG	NA	False	NA	-27	True	NA	NA	NA	35909125	35882282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_35882387_35887220_35887990_35900125_35900228_35908702
transcript_99921.nic	chrX	-	629	3	ISM	ENSMUSG00000059708.13	ENSMUST00000133980.2	1370	6	-376	6751	-77	-6751	5prime_fragment	FALSE	canonical	3	34	junction_1	5.5	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAGAGAAGAGGAAGTAG	NA	False	NA	-27	True	NA	NA	NA	35909125	35882282	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	ISM_chrX_-_35882387_35900125_35900228_35908702
transcript_99923.known	chrX	+	1111	5	FSM	ENSMUSG00000037636.7	ENSMUST00000047655.7	1111	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	2.69258240356725	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGCTGACTAGAACTAC	NA	False	NA	NA	False	AAAACA	-13	NA	36007311	36040855	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_36007672_36015785_36016028_36021420_36021594_36039134_36039270_36040654
transcript_9993.nnic	chr10	+	647	6	NNC	ENSMUSG00000025400.12	novel	514	3	NA	NA	-71	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	15.6665248220529	71	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACTGATGCAATAGGCTG	NA	False	NA	7	True	AATAAA	-17	NA	127563644	127567637	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chr10_+_127563808_127564039_127564146_127564315_127564346_127564982_127565037_127565344_127565419_127567417
transcript_99936.known	chrX	+	1240	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	0	0	0	0	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	19516	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	29	True	AATAAA	-31	NA	36059303	36062460	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
transcript_99939.known	chrX	+	1035	2	FSM	ENSMUSG00000084990.2	ENSMUST00000154993.2	1035	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	156	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCCTCCCCTCCCCCAC	NA	False	NA	NA	False	NA	NA	NA	36078423	36080853	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_36078984_36080378
transcript_99948.known	chrX	-	1145	7	FSM	ENSMUSG00000006423.16	ENSMUST00000115249.10	1145	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	85.4393872221055	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTACAGAGTCGGGTGTG	NA	False	NA	NA	False	ATTAAA	-14	NA	36127891	36087389	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_36087823_36116291_36116385_36116982_36117073_36117935_36118075_36120504_36120547_36127276_36127395_36127661
transcript_99952.known	chrX	-	3340	7	FSM	ENSMUSG00000006423.16	ENSMUST00000115248.10	3340	7	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_1	34.0999348321306	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCTTGTTTTGATCATTT	NA	False	NA	NA	False	AATAAA	-28	NA	36127899	36112195	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_36114816_36116291_36116385_36116982_36117073_36117935_36118075_36120504_36120547_36127276_36127395_36127661
transcript_9996.known	chr10	-	3954	2	FSM	ENSMUSG00000058396.8	ENSMUST00000079692.6	3954	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAATCAGATGTACGAT	7979	False	NA	NA	False	AATAAA	-31	NA	127587601	127583144	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_-_127586966_127587468
transcript_99963.known	chrX	+	552	6	FSM	ENSMUSG00000016308.13	ENSMUST00000201117.4	552	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	359.082497484909	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAGAACAAAGCTGGCGCG	NA	False	NA	NA	False	NA	NA	NA	36138010	36146765	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_+_36138183_36138370_36138445_36138819_36138846_36145309_36145400_36146251_36146341_36146664
transcript_99964.known	chrX	-	4673	11	FSM	ENSMUSG00000050379.16	ENSMUST00000053456.11	4673	11	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	18.537529500988	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACGTGTGTGTGGTGTTCT	NA	False	NA	NA	False	ATTAAA	-14	NA	36253309	36177098	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_36180199_36184021_36184067_36186492_36186684_36190434_36190568_36193751_36193921_36198036_36198134_36205707_36205870_36210220_36210408_36230248_36230445_36238715_36238831_36253031
transcript_99966.known	chrX	-	3457	10	FSM	ENSMUSG00000050379.16	ENSMUST00000060474.14	3457	10	0	0	0	0	multi-exon	TRUE	canonical	3	7	junction_1	15.297865581774	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	36253309	36174978	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_36176908_36186492_36186684_36190434_36190568_36193751_36193921_36198036_36198134_36205707_36205870_36210220_36210408_36230248_36230445_36238715_36238831_36253031
transcript_99968.nnic	chrX	-	2194	10	NIC	ENSMUSG00000050379.16	novel	4673	11	NA	NA	48	-801	combination_of_known_splicesites	FALSE	canonical	3	21	junction_1	11.2940495640649	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTAGAGTCTTGATTCATA	NA	False	NA	NA	False	AATAAA	-18	NA	36253261	36179484	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NIC_chrX_-_36180199_36186492_36186684_36190434_36190568_36193751_36193921_36198036_36198134_36205707_36205870_36210220_36210408_36230248_36230445_36238715_36238831_36253031
transcript_99969.nnic	chrX	-	2191	10	NNC	ENSMUSG00000050379.16	novel	4673	11	NA	NA	24	-801	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_5	16.9538225414044	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTAGAGTCTTGATTCATA	NA	False	NA	NA	False	AATAAA	-18	NA	36253285	36179484	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	NNC_chrX_-_36180199_36186492_36186684_36190434_36190568_36193751_36193921_36198036_36198134_36205734_36205870_36210220_36210408_36230248_36230445_36238715_36238831_36253031
transcript_9997.known	chr10	+	357	1	FSM	ENSMUSG00000112909.2	ENSMUST00000219845.2	357	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	128	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGCTCCCTGCCCTGCG	NA	False	NA	-85	True	NA	NA	NA	127847644	127848001	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chr10_+_127847600_127848000
transcript_99998.known	chrX	-	612	3	FSM	ENSMUSG00000079641.4	ENSMUST00000115231.4	612	3	0	0	0	0	multi-exon	FALSE	canonical	3	12849	junction_1	35	319732	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGACCCGATAAGGCTTC	NA	False	NA	-5	True	TATAAA	-17	NA	36349055	36346172	ES_captrap_ont	iso_detect_ref_spbu_long_captrap_ont	FSM_chrX_-_36346403_36347637_36347742_36348777
